LOCUS       DATAJL010000001         2016 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_90247,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000001 DATAJL010000000
VERSION     DATAJL010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90247"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VHN39_00005"
     CDS             <1..296
                     /locus_tag="VHN39_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX2814745.1"
                     /translation="LEALDIIARAITPPSVGKRFDTWFLLADAERLMSLERQADCGEL
                     EEIAWVDFDEAQSLPLPTVTRMMLKEAVLRMDDAQRPKPFLRFRQGAMRPEHL"
     gene            361..726
                     /locus_tag="VHN39_00010"
     CDS             361..726
                     /locus_tag="VHN39_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2814746.1"
                     /translation="MTIQGSCHCGTTKFECDAPPETVTRCTCSFCSKRGALWAYYTPQ
                     QFKVLGEDQDATYRWKTRTVAHHYCPTCGCGTFSLSPDWTSGKADFTKLKVGVNAHLF
                     DDFDLQAVPVVVIDGKNQW"
     gene            857..1024
                     /gene="rpmG"
                     /locus_tag="VHN39_00015"
     CDS             857..1024
                     /gene="rpmG"
                     /locus_tag="VHN39_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011454349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEX2814747.1"
                     /translation="MAKPASIKIRLNSSADTGFFYVTKKNARTKTDKLVMKKYDPVVR
                     KHVEFREGKIK"
     gene            1113..1901
                     /locus_tag="VHN39_00020"
     CDS             1113..1901
                     /locus_tag="VHN39_00020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814748.1"
                     /translation="MKGLSTDQRRRFDERGLVKVEGLISPETAEAMAGRLWQALADLH
                     GARRGEPATWKAEWPAKFGALQKSGAFSAMATPGLLALLDDLIGRDRWAPPPSWGLPL
                     VRFPRAMDRWNVPSQVWHLDLTPDPKRRDMMVGRLFVLLAPLRAGGGGTLVATGSHRI
                     VAALAEGRRAHLSSQEMRKRLAMEHPWFADLMSPPKGGEDRVVRFMTAATTVNGVSLQ
                     VEEVTGEPGDVFFMHPHALHAPAPCVLDTPRLALAQTVYPKGWF"
BASE COUNT          336 a          678 c          672 g          330 t
ORIGIN      
        1 acctggaggc gctggacatc atcgcgcgcg ccatcacccc ccccagcgtc ggcaagcgct
       61 tcgacacctg gttcctgctg gccgacgccg agcggctgat gagcctcgag cgccaggccg
      121 actgcgggga gctggaggag atcgcctggg tcgacttcga cgaggcccaa tccctgcccc
      181 tgcccaccgt cacgcgaatg atgctgaagg aggccgtgct gagaatggac gatgcgcagc
      241 ggcccaagcc cttcctgcgg ttccgccaag gcgccatgcg gcccgagcac ctctagggcg
      301 ggttgctgac aggcagctgt cagcaggctt gtgcgttaag ggggcgaacg gagatctccc
      361 atgaccatcc agggcagttg ccactgcggt acgacgaaat tcgagtgcga tgcgccgccg
      421 gagacggtga cccgctgcac ctgctcgttc tgttccaagc gcggggcgct gtgggcctac
      481 tacacgcccc agcagttcaa ggtgctgggc gaggaccagg acgccaccta ccgctggaag
      541 acgcggaccg tggcgcacca ctattgcccc acctgcggct gcgggacgtt cagcctctcg
      601 ccggactgga cgagcggcaa ggctgacttc acgaagctca aggtcggggt gaacgcgcat
      661 ctgttcgacg acttcgacct gcaggccgtg ccggtggtgg tgatcgacgg caagaaccaa
      721 tggtaggccg aagggcacat tcgtccgccc gccattgact ttggcccgcg gattcgtatt
      781 ttccgcggct cttcgaacac ccgccgtcgg cccctttctc aagaatggcc gtccggcccc
      841 gccctaagga ccacccatgg cgaagcccgc ctccatcaag atccgcctga attcctcggc
      901 ggacaccggc ttcttctacg tcaccaagaa gaacgcccgc accaagaccg acaagctggt
      961 catgaagaag tacgacccgg tcgtgcgcaa gcacgtggaa ttccgcgaag gcaagatcaa
     1021 gtagccgacg caacttcccg tatttgtgtt gaaaacgccc ggatcactcc gggcgttttt
     1081 cgttttgggc tcatgttgcg gaggccacga acatgaaggg attgtcgacc gatcagcgcc
     1141 gccgcttcga cgagcgcggc ctggtgaagg tcgaagggct catctcgccg gaaacggccg
     1201 aggcgatggc tgggcggctg tggcaggcgc tggccgacct gcatggcgcc cggcggggtg
     1261 aacccgcgac ctggaaagcc gaatggcccg ccaagttcgg cgcactgcag aagagcggcg
     1321 cgttttcggc gatggccacg cccggcctgc ttgccctgct cgacgacctg atcggccgcg
     1381 accgctgggc gccgccgccc agctgggggc tgccgctggt gcgcttcccg cgcgctatgg
     1441 atcgttggaa tgtccccagt caggtctggc acctcgacct gacgccggat cccaaacgcc
     1501 gcgacatgat ggtggggcgt ctgttcgtgc ttctggcgcc gctccgggca ggcggcggcg
     1561 gcaccctggt ggcgacgggc tctcaccgga tcgtcgcggc gctcgccgaa ggccgccgcg
     1621 cgcacctgag ctcacaggaa atgcgcaagc ggttggccat ggagcacccc tggttcgccg
     1681 acctcatgtc gccgcccaag ggcggcgaag accgggtcgt ccgattcatg accgcggcga
     1741 cgacggtgaa cggcgtatcc ctgcaggtgg aggaggtcac cggagagccc ggcgacgtct
     1801 tcttcatgca cccgcacgcc ctgcacgctc ctgcgccctg cgtgctggac acgccgcggc
     1861 tggcgctggc gcagacggtc tacccgaagg gctggttcta ggcggctttc gcgatcacgc
     1921 ggttacggcc gtgagccttg gcctcataca tggcttcgtc ggcgcggcgg accagcttca
     1981 ggggcgtgtc gtcggccagg ctggcggcca cgccga
//
LOCUS       DATAJL010000002         1934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38731,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000002 DATAJL010000000
VERSION     DATAJL010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38731"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1822)
                     /locus_tag="VHN39_00025"
     CDS             complement(<1..1822)
                     /locus_tag="VHN39_00025"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2814749.1"
                     /translation="MGCKLWLSASVLALVWTGAAHAQSQATTASGTAKAAADATVAEL
                     VVTAERRTENLQTTAIAATVISGDDLANKGVLTIDQIQFALPGVTVNNFGQGNDFNIR
                     GIGKAEHNSQTTTGVITYRDGIATFPGYFQGEPYYDISSVQVLRGPQGTFVGQNATGG
                     AVFVTSNDPVIGGGAHGYVAGQVGNYADVGAQGAINLPVSDTFAARLAFNTERRDSFY
                     DITGPGSNNPGVREGSIRLGLLWKPTAALSVLFKTDYNYLDFGAYPADPVLAKNDPFH
                     ITANFPQKALDRFVRSDLKIDYVLDNGITLRSVSGFQKGNTRYQADLDGTSALNFTFG
                     DSVNETIWSQEFNLISPDTGPVTYVLGAYLQTDEYNFLPGQFFIGEPAGSVFTEYRLQ
                     GTNPKQTEALFGQVSFKLAKGLELQLGARYSDARTSNHVAVQQFGTPIDDQQSARFSN
                     TSGKASLNWTIDPHNFVYAFAATGFRAGGLNVPVGLGLPAPFGPEKVTEYETGWKAGL
                     FDGHLRTQVDAYYNHYENFQVIIGFPAFPTFGFELNNPNPTKIYGLEAQAEAVFGAFS
                     FDAGLGLMHSEIGTFFAVDPRIPNTGACAPATGPATASCIN"
BASE COUNT          301 a          594 c          681 g          358 t
ORIGIN      
        1 gattgatgca ggacgccgtg gccgggccgg tcgccggcgc gcaggccccg gtgttcggaa
       61 tgcgcgggtc cacggcgaag aaggtgccga tctcgctgtg catcaggccc aggcccgcgt
      121 cgaacgagaa cgccccgaag accgcttcgg cctgcgcttc cagaccatag atcttggtgg
      181 ggttggggtt gttgagctcg aagccgaagg tggggaaagc cgggaagccg atgatcacct
      241 ggaagttttc gtagtggttg taataggcgt cgacctgggt gcgcagatgg ccgtcgaaca
      301 ggcccgcctt ccagcccgtc tcgtactccg tcaccttctc cgggccgaag ggcgccggca
      361 ggcccaggcc caccggaacg ttgaggccgc cggccctgaa cccggtcgcg gcgaaggcgt
      421 agacgaagtt gtgcggatcg atggtccagt tcagcgacgc cttgccggag gtgttcgaga
      481 atcgcgccga ctgctggtcg tcgatcggcg tgccgaactg ctggaccgcc acgtggttgg
      541 aggtgcgggc gtccgaatag cgggcgccga gctgcagctc caggcccttc gccagcttga
      601 agctcacctg gccgaacaga gcctcggtct gctttgggtt cgtgccctgt agccggtact
      661 ccgtgaacac gctgccggcc ggctcgccga tgaagaactg cccgggcagg aagttgtact
      721 cgtcggtctg cagataggcg cccaggacat aggtgaccgg gccggtgtcc ggcgagatca
      781 ggttgaattc ctgcgaccag atggtctcgt tgacagaatc tccgaaggtg aagttcagcg
      841 cgctggtccc gtcgaggtcg gcctgatagc gggtgttgcc cttctggaag ccgctgaccg
      901 accgcagcgt gatgccgtta tccagcacat aatcgatctt caggtcggat cggacgaacc
      961 ggtccagcgc cttctgcggg aagttcgccg tgatgtggaa cggatcgttc ttggcgagga
     1021 ccgggtcggc cggataggcg ccgaaatcca ggtagttgta gtcggtcttg aagagcaccg
     1081 agagcgccgc ggtgggcttc cacagcaggc ccaggcggat gctgccctcg cggacgccgg
     1141 ggttgttcga gcccggtccg gtgatgtcgt agaagctgtc gcggcgctcg gtgttgaacg
     1201 ccaggcgcgc cgcgaaggtg tcgctgaccg gcaggttgat cgcgccttgc gcgcccacgt
     1261 cggcgtagtt gccaacctgg cccgcgacat agccgtgggc gccgccgccg atgaccgggt
     1321 cgttcgaggt gacgaagaca gcgccgcccg tggcgttctg gcctacgaag gtgccctgcg
     1381 ggccgcgcag cacctggacg ctggagatgt cgtagtaggg ctccccctgg aagtagccgg
     1441 ggaaggtggc gatgccgtcc cgataggtga tcacccccgt cgtggtctgg ctgttgtgct
     1501 cggccttgcc gatgccgcgg atgttgaaat cgttgccctg gccgaagttg ttcaccgtca
     1561 cgccgggcaa ggcgaactgg atctgatcga tggtcagaac gcccttgttg gcgaggtcgt
     1621 cgccggagat caccgtcgcg gcgatcgcgg tcgtctgcag gttttcggtc cggcgttcgg
     1681 cggtgacgac cagctcggcg accgtcgcgt cggcggccgc cttcgcggtt cctgacgccg
     1741 tcgtcgcctg cgattgcgcg tgcgccgcgc ccgtccagac cagcgccagg acagacgccg
     1801 acagccagag cttgcagccc atcttgtttc ctccatccgc cacgcgggcg gtcccatgtg
     1861 ctcttcggca cgtgggcgga ggttggccgt gatcgacggc gccgtcaaca ttcattcaca
     1921 catgagtgaa tgtc
//
LOCUS       DATAJL010000003         1886 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38751,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000003 DATAJL010000000
VERSION     DATAJL010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38751"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..992
                     /locus_tag="VHN39_00030"
     CDS             <1..992
                     /locus_tag="VHN39_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX2814750.1"
                     /translation="GHMDYGKKDPSLGWRFTDAWLSMAGAGDKGLPNGLPVDEWGIRV
                     DDKGRPTGSCVNRGGDTNGPAAVYAVAKYVEWLHKYAPPEAQAMNFSEAGPVPGQGNI
                     AQQIFWYTTFSADLVKSPAVTNTDGTPKWRMAPSPHGAYWEPGQKLGYQDAGSWTLMK
                     STPVERSKAAWLYAQFVVSKTVDVKRSQVGLTFVRESTVLDKSFTARAPKLGGLIEFY
                     RSPARVQWSPTGNNVPDYAKLTQLWWQNIGDASSGAKTPQQVMDALCVAQESVLDRIE
                     RSGVQGAIGPKLNPQINPQVWLDAPGAPKPKLANERPKPITVDYDELIKSWKK"
     gene            complement(1007..1855)
                     /locus_tag="VHN39_00035"
     CDS             complement(1007..1855)
                     /locus_tag="VHN39_00035"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX2814751.1"
                     /translation="MSLSPFVPTPKFEDYQARFKDHFKLERRADGVLLAQAHTLGGSV
                     QLSVENHRALGQLFKTIGADPENELLIFTGSGEHFMAALDPEGFALEQEDLQHWAYEY
                     AYKDGRINVSSLINDLEIPTIGVLNGHAAHAEICLMCDLTLCAEEAVIFDPHFNMGSV
                     PGDGIHSCLQELLGVKRAAYALITGQRIDATTALEWGMVNEVRPRDQLLDRAWKLADH
                     IMSQPRITRRLTTQIIRRPWKRRITDDLDGGFGIQMFAHLAKNQAIHDASHAQAADAA
                     ARRLSD"
BASE COUNT          325 a          610 c          643 g          308 t
ORIGIN      
        1 atggccacat ggattatggc aagaaggacc cctcgctggg ctggcggttc accgacgcct
       61 ggttgtcgat ggccggcgcc ggcgacaagg gcctccccaa cggcctgccg gtggacgagt
      121 ggggcatccg ggtcgacgac aagggccgcc cgaccggctc ctgcgtcaac cgcggcggtg
      181 acaccaatgg cccggcggcg gtctatgcgg tcgcgaaata cgttgagtgg ctgcacaagt
      241 acgcgccacc cgaagcccag gcgatgaact tctcggaagc cgggcccgtg cctggccaag
      301 gcaacatcgc ccagcagatc ttctggtaca cgaccttctc ggcggacctc gtgaagtcgc
      361 cggccgtgac caacaccgac ggcacgccga agtggcggat ggcgccttcg ccgcacggcg
      421 cctattggga gccgggacag aagctggggt atcaggacgc gggttcctgg accctgatga
      481 aatcgacgcc ggtggagcgg tccaaggccg cctggctcta tgcccagttc gtggtctcca
      541 agaccgtgga cgtgaagcgc agtcaggtgg gcctgacctt cgtccgcgag agcaccgtcc
      601 tggacaagag cttcacggcg cgcgcgccca agctcggtgg cctgatcgag ttctaccgct
      661 cgccggcccg ggtgcagtgg tcgcccaccg gcaacaacgt ccccgactac gccaagctga
      721 cccagctctg gtggcagaac atcggagacg cctcgtcggg cgccaagact ccgcagcagg
      781 tgatggacgc gctctgtgtc gcgcaggaaa gcgtgctgga ccggatcgag cgctccggcg
      841 tgcagggggc gatcggcccc aagctgaacc cgcagatcaa tccgcaggtc tggctggatg
      901 cgcccggcgc gcctaagccc aagctcgcca acgaacgccc caagccgatc accgtcgact
      961 acgacgaact gatcaagagc tggaagaagt aggcgggacg acgcggtcag tcggacaggc
     1021 gtcgcgccgc ggcgtccgcc gcttgggcat gcgaggcgtc gtggatcgcc tggttcttgg
     1081 cgaggtgggc gaacatctgg atgccgaacc cgccgtccag gtcgtcggtg atgcggcgtt
     1141 tccacggccg ccggatgatc tgggtcgtca ggcggcgcgt gatccgcggc tggctcatga
     1201 tgtggtcggc cagcttccag gcgcggtcca gaagctgatc gcgcggccgc acctcgttga
     1261 ccatgcccca ctccagggcg gtcgttgcgt cgatgcgctg gccggtgatc agggcgtagg
     1321 ccgcccgctt caccccaagc agctcttgca ggcagctatg gatgccatcg cccggaaccg
     1381 agcccatgtt gaagtgcggg tcgaagatga ccgcctcctc ggcgcagagc gtgaggtcgc
     1441 acatcaggca gatctcggcg tgggcggcat ggccgttgag caccccgatc gtcgggatct
     1501 ccaggtcatt gatcagggaa ctgacgttta tccgcccgtc cttgtaggcg tattcgtagg
     1561 cccagtgctg caggtcctcc tgctcgaggg cgaacccttc ggggtcgagc gcagccatga
     1621 aatgctcgcc cgagccggtg aagatcagca gctcattttc gggatcggcg ccgatcgtct
     1681 tgaagagctg tccaagggcc cggtggttct cgacgctcag ctggaccgag ccaccgaggg
     1741 tgtgggcctg ggccagcaga acgccatcgg cgcgccgctc cagcttgaag tgatccttga
     1801 agcgcgcctg gtagtcctcg aacttcggcg tcggaacgaa ggggctgagc gacataacct
     1861 cgtctccctg ggctcgggtc taagcc
//
LOCUS       DATAJL010000004         3095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_66, whole
            genome shotgun sequence.
ACCESSION   DATAJL010000004 DATAJL010000000
VERSION     DATAJL010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(260..2110)
                     /locus_tag="VHN39_00040"
     CDS             complement(260..2110)
                     /locus_tag="VHN39_00040"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protease pro-enzyme activation domain-containing
                     protein"
                     /protein_id="HEX2814752.1"
                     /translation="MATTVLAAGGVANATPLTSTATPVPATQPVSFTVYLPLRNVSAL
                     KALLTAQQTVGSASYHKWLSPADVAAQFGPTPAAMAQAQATLTAAGLTVTGTHIRSIE
                     VSGPAGSVSKLLLTALKTLPASDGSARVIASSRVVVPQSLAGAIIPTFSAVPEHKPLS
                     VMTAAVPDNRNGPAGSYNYNDLKQAYDYPAYTSLDGTGAHVAIVMEANASNNDVAAMF
                     THESFTGTTGKAPPTYTYVPIDGGGSFHGVNDGGTDEAELDVQMVLGGAPGASVSLFS
                     IPNLADSHIIHAYEAIIDSGAYDIVTSSFGECELFYTPAYNNGYDFTGTLGLYDEIFM
                     LGNAEGITFLASSGDEGGTGCPSVNIVPHFVATFNGPPVTAGKGVSTPSGDPNVTSVG
                     GGNLITSFTAIGALPSTYVSEQGFGDPEIAFDEFGVGVNVNGQFWGAGGGVGTIFARP
                     AYQTLVDTGSTTFRTQPDIGMLVGGCPGGISVLPCGPNRSAVVVTIGAPAGSDGVGHR
                     FGFIGTSVASPEFAGALALLVQALGGRVGNINPTLYALAATQIAAGGASAPAASQFYH
                     MNIPGFDGVYSSAPPAGYNYIFGNGSPDIRNLFGLTAFPAAGTPRSATNP"
     gene            2635..>3095
                     /locus_tag="VHN39_00045"
     CDS             2635..>3095
                     /locus_tag="VHN39_00045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814753.1"
                     /translation="MTLLASAPARAVVVPLTDGGGWNEFFFGDTVFFPDFQTLDTGET
                     IDFTFALTSSSALRVTDGFNDGDQFAVTINGSTSNTSAPVFTGNNIFDNWTSVFTDPL
                     IGATYSHATYLLGPGSYDVTGVVIQSPFGSGSGAIELGNVDGLGGVPEPAI"
BASE COUNT          539 a          955 c         1046 g          555 t
ORIGIN      
        1 agcattttca gatacctagg cgaactcgcg tgcaaacgtg ggcttgcagg tccacgtgcg
       61 gtcaaatctg cacataacag gaccgaccca aaagttcgtg gtggcggcgg acgatggtga
      121 agacgacgga tcgggatgac agccgccccg cggccatcaa ggcgtcgttg tcctgagaca
      181 agaaaaaagg gcaggccatg aggcctgccc ctttcgatgg ccgccaaccg cggttcgtga
      241 gaaccgcagc gtagggcttc tacgggttgg tcgcggatcg cggagtcccc gcggccggga
      301 aggcggtcaa gccgaacagg ttgcggatgt ccgggctgcc gttgccgaag atgtagttgt
      361 agccggccgg cggcgccgat gagtagacgc cgtcgaagcc cgggatgttc atgtggtaga
      421 actgggaggc agccggcgcg ctggccccgc ccgccgcgat ctgggtggcg gcgagcgcat
      481 agagcgtggg gttgatgttg ccgacccgtc cgccgagcgc ctgcaccagc agcgccaggg
      541 cgccggcgaa ttccggtgag gccaccgagg tgccgatgaa gccgaaccgg tggccgacgc
      601 cgtcggatcc cgcgggggcg ccgatcgtga cgaccacggc ggagcggttc gggccgcagg
      661 gcaggacact gatgccgccc gggcaaccgc cgaccagcat gccgatgtca ggctgggtgc
      721 ggaaggtggt ggatccggtg tccaccagcg tctggtaggc cggcctggcg aagatcgtgc
      781 cgacgccgcc gccggcgccc cagaactgcc cgttgacgtt caccccgacc ccaaattcgt
      841 caaaggcgat ctccggatca ccgaagccct gctcgctcac ataggtggat ggaagcgccc
      901 cgatggccgt gaagctggtg atcaggttgc cgccgccgac cgaggtcacg ttggggtcgc
      961 cagagggggt cgagacgccc ttgccggccg tgacgggcgg gccgttgaag gtggccacga
     1021 agtgcgggac gatattgacc gacggacagc cggtgccgcc ctcgtcgccg gagctggcga
     1081 ggaaggtgat gccctcggcg ttcccgagca tgaaaatctc gtcgtagagc cccagggtcc
     1141 cggtgaaatc gtagccgttg ttgtaggccg gggtgtagaa cagctcgcat tcgccgaacg
     1201 acgaggtgac gatgtcatag gcgccggagt cgatgatcgc ctcgtaggcg tgaatgatgt
     1261 gcgagtcggc caagttcgga atgctgaaca ggctgacgct ggcgccaggc gcgccgccca
     1321 gcaccatctg cacgtccagt tcggcctcgt cggtcccgcc gtcattcacg ccgtgaaatg
     1381 agccgccgcc gtcgatcggc acgtaggtgt aggtcggcgg agccttgcca gtggtgccag
     1441 taaaactctc gtgggtgaac atcgcggcca cgtcgttgtt gctggcgttg gcctccatca
     1501 cgatcgccac gtgggcgccg gtgccatcca gcgacgtgta ggcggggtag tcgtaggcct
     1561 gcttcaggtc attgtagttg tacgatcccg cggggccgtt gcgattgtcg ggaacggccg
     1621 ccgtcatgac gctgaggggc ttgtgttccg gcaccgcgga gaaggtcggg atgatcgcgc
     1681 cggccagaga ttgcgggacg accacccggc tgctggcgat gacgcgggcg ctgccgtccg
     1741 aggcgggcaa ggtcttcagc gccgtcagca gcagcttgct caccgatccc gccgggccgc
     1801 tcacttcgat cgagcggatg tgggttccgg tgacggtcag gccggcggcg gtcaaggtcg
     1861 cctgggcctg ggccatggcg gcaggcgtcg ggccgaactg ggcggcgacg tcggccggcg
     1921 acagccactt gtgatagctc gccgaaccca ccgtctgctg cgcggtgagg agcgccttca
     1981 gggcgctaac gttgcgcagc ggcagataga ccgtgaagct caccggctga gtggccggaa
     2041 ccggcgttgc ggtgctggtc agcggcgtgg cgttcgccac cccaccggcc gccaggaccg
     2101 tcgtcgccat cagcgcgctt gcgaaaatat gtcttttcat aaccccagcc cttcttgcga
     2161 aaacaaagtg gagctggacc gccgcaaatt atcgaaacgc cgtccagacg ccgcccttcg
     2221 caaaacggta gtttacggtt agtcacgacg caagtaggcc aacgcctcat ttttggttta
     2281 cggcgtagtt aatcgggcgc ggacgcatag tatacaggga gaatctgatc gcttcgtgat
     2341 gcgccctgcg cccgcactgt cgggttttga gtgctcatga cgcgaataac tcgcctctca
     2401 ggcgagtaat ggcgccgctg tcggaacgtg gggcgcctta acaagtcaaa ttcttggcgt
     2461 tcccgaatcc aaagcgtggg actcaactgt caggcgcaac cacttgtcgc aatcccgccg
     2521 caatgctagc cgtttctctt ctgacttcta atgggtcggc gtcggccgct taggcgacgg
     2581 atacaggggc aacaaatgcg taatcttatc aaaggtttat tgggtgcagc ggcgttgacc
     2641 ctgctcgcgt cggcgccggc ccgtgcggtc gtggtgccgc tgaccgatgg aggcggctgg
     2701 aacgaattct ttttcgggga cacagttttc ttcccggact tccagaccct cgataccggc
     2761 gagaccatcg acttcacctt cgccctgacc tcttccagcg cactgcgcgt caccgacggc
     2821 tttaacgacg gcgaccagtt cgcggtgacc atcaacgggt ccacctcgaa cacctcggct
     2881 ccggtcttca ccggtaacaa catcttcgac aactggacgt cggtgttcac cgatcccctg
     2941 atcggtgcga cctacagcca tgcgacctac ctgctgggcc cgggctccta cgacgttacc
     3001 ggcgtggtca tccagtcgcc cttcggctcc ggctcgggcg cgatcgagct cggcaatgtg
     3061 gatggcctcg gtggcgttcc ggaacccgcg atctg
//
LOCUS       DATAJL010000005         1666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38769,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000005 DATAJL010000000
VERSION     DATAJL010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1666
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38769"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..625
                     /locus_tag="VHN39_00050"
     CDS             <1..625
                     /locus_tag="VHN39_00050"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEX2814754.1"
                     /translation="SGAVALAQDLAAQADSLEALCAAIAAFDGCPLKFEGAASQAVVY
                     RGDPSAPLMVIGEGPGADEDRQGQPFVGRAGQLLDKMLAAAGLTDRVLITNTVFWRPP
                     GNRTPTPAEQAVCAPFVERAIALVKPRMLLLVGGASAKAMLKKDEGILSMRGRWHEWR
                     STDGAVELPALPTLHPAFLLRQPAAKKRAWADLLTLTERLDRAERPA"
     gene            699..>1666
                     /locus_tag="VHN39_00055"
     CDS             699..>1666
                     /locus_tag="VHN39_00055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEX2814755.1"
                     /translation="MTLNKRLWAGATLFFGALVCSASIAGTAAADAPQALSSDDARAY
                     SAAFAATERGDFIDAQMQTAAVKDSSLLGYLSFHALMHPTAHVAAFDELSSWLAKFSD
                     LPVAGRIFALASKRKTDPTAEAAARPLIALSDGPAIANPALSDKARRGREAFYAGDTR
                     RALTLAQASSDRWIAGLAAYRLKAYDKARENFADLARDGECDAWMQSAAAYWAARSAE
                     AQSDGTASAKFLRTAARNSETFYGMLAARQLKLADQAAVAADNDPVAKLLLAAYTAPA
                     NAASSAELARFVASDARAHRAAALAQIGRGSDAIQELRAGMALART"
BASE COUNT          236 a          624 c          571 g          235 t
ORIGIN      
        1 ctccggcgct gtcgcgctgg cgcaggacct cgcggcccag gccgacagcc tggaagccct
       61 ctgcgccgcc atcgcggcct tcgacggttg tccgctgaag ttcgagggcg ccgcgtccca
      121 ggccgtggtc tatcgcggcg atccgagtgc gcctctgatg gtgatcggcg aagggcctgg
      181 cgccgacgag gaccgccagg gtcagccctt cgtcggccgc gcggggcagc tgctagataa
      241 gatgctggcg gccgcggggc tcaccgaccg ggtgctgatc accaacacgg tcttctggcg
      301 gccgcccggc aaccgcacgc cgacacccgc cgaacaggcg gtctgcgcgc ccttcgtgga
      361 gcgggccatc gcgctggtga agcccaggat gctgctgctg gtgggcggcg cctcggccaa
      421 ggcgatgctg aagaaggacg agggcatcct ctccatgcgg ggtcgctggc acgagtggcg
      481 ctcgacggac ggggcggtcg agctgccggc cctgccgacg ttgcatccgg ccttcctgct
      541 gcgccagccg gcggccaaga aacgcgcctg ggcggacctt ttgacgctga cggagaggct
      601 tgatcgggcc gagcgtcccg cttaacctta ccgccgggga cttcgagaag aggactgcgc
      661 accgcccgcg atagacgggc cggcgctgac gagacggcat gacgctgaac aagcgcctat
      721 gggccggggc cacgctgttc tttggcgccc tggtctgttc cgcctccatc gcagggaccg
      781 cggcggctga cgccccgcag gcgctgtcga gcgacgacgc ccgcgcctac tccgccgcct
      841 tcgccgccac cgagcgcggc gacttcatcg acgcccagat gcagaccgcg gcggtcaagg
      901 acagctccct gttgggctac ctctctttcc acgccctgat gcacccgacc gcccacgtgg
      961 cggctttcga cgaactctcc agctggctcg ccaagttcag tgacctgccg gtggcgggcc
     1021 gcatcttcgc gctggcgtcc aagcgcaaga ccgaccctac agccgaggcc gcggcccgcc
     1081 cgctgatcgc gctctcggac ggtcccgcga tcgccaatcc ggcgctctcg gacaaggccc
     1141 gcaggggccg tgaggccttc tacgcgggcg atacccggcg cgcgctgacc ctggcccagg
     1201 cctccagcga ccgctggatc gccggcctcg cggcctatcg gctgaaggct tacgacaagg
     1261 cccgcgagaa cttcgccgac ttggcccgcg acggcgaatg cgacgcctgg atgcagtcgg
     1321 ccgccgccta ctgggccgcc cgctcggccg aggcccagag cgacgggacg gcgtctgcca
     1381 agttcctgcg gacggctgcg cgcaattccg agacctttta cggcatgctg gccgcccgcc
     1441 agctgaagct cgccgatcag gccgccgtgg ccgctgacaa tgatccggtc gccaagctgc
     1501 tactggccgc ctacacggcg ccggccaacg ccgcctccag cgccgaactt gcccggttcg
     1561 tggccagcga cgcccgggcc caccgcgccg cggccctcgc ccagatcggc cggggatcgg
     1621 acgccatcca ggaactgcgc gccggcatgg cgctggcccg cacgag
//
LOCUS       DATAJL010000006         1834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_12951,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000006 DATAJL010000000
VERSION     DATAJL010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12951"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..385
                     /locus_tag="VHN39_00060"
     CDS             <1..385
                     /locus_tag="VHN39_00060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2814756.1"
                     /translation="ARRVDPAVVLDGRFAGELETPIVRRAAPDVGHMMARLNHQTSLR
                     AQDLADADDAGDLATDLMSAIGRFWTSYVWRQGVREGELGFLIAMMAGLDAVLSGLRA
                     RELLKARAVASATAPAQPARIGRTG"
     gene            complement(382..819)
                     /locus_tag="VHN39_00065"
     CDS             complement(382..819)
                     /locus_tag="VHN39_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012274997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2814757.1"
                     /translation="MPLHREGPRRILVVDDDVSILELVSTRLTLAGYLVVTARNGVEA
                     LSRLSERPYDGMVLDLNMPEIDGFGVLECMADLPDPAPPTLVLTASHNSADVQHAVKL
                     GARDYLSKPFEDRQLLMRVSRLFRTQPVNLSMDEALNLDLSID"
     gene            complement(803..>1834)
                     /locus_tag="VHN39_00070"
     CDS             complement(803..>1834)
                     /locus_tag="VHN39_00070"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2814758.1"
                     /translation="AQGQIGRIAGAGRALLAVINDVLDFSKLETGEITIRRRPTGPGQ
                     TAREVLEMFAMQADAKGLDLRFDAAVGLPRSLVLDEDRLRQILINLVGNAVKFTDRGR
                     VSLALSYDADQRLICEVADTGPGIAAAAKSKLFQRFSQIDGSSTRTKGGSGLGLAICQ
                     GLAQAMGGAVSVTSRVGRGSTFRLTLPALPGVADAATGTRASDLAELYGLRVLVVDDN
                     AVNRELARAILESVGVEVSEVHDGREAVEIAQRLPLDAILMDLRMPGLDGRAATAAIR
                     RLPGPNQHMPVLAFSADGIMDLSAPENLCFQGVVLKPTSPADLFRALLRVMDDGSAVD
                     EGRPYAAAS"
BASE COUNT          274 a          672 c          621 g          267 t
ORIGIN      
        1 ggcccgaaga gtcgatccgg ccgttgtgct cgacgggcgg ttcgccggcg agctggagac
       61 ccccatcgtc cgccgcgcgg cgcccgatgt cggccacatg atggcccgcc ttaaccacca
      121 gacctcgctg cgcgctcagg atctcgccga cgccgacgac gcgggcgatc tggccaccga
      181 cctgatgagc gcgatcggcc ggttctggac gtcctacgtc tggcgtcagg gtgtgcgcga
      241 aggcgagctt ggcttcctga tcgccatgat ggccggcctc gacgccgtgc tctccggcct
      301 ccgcgcccga gaactcctca aggcccgcgc cgtcgcctcg gccaccgcgc cggcgcagcc
      361 cgcccgcatc ggccgcaccg gctaatcgat ggagaggtcg aggttcagcg cctcgtccat
      421 cgacaggttg acgggctggg tgcggaacag gcgcgacacc cgcatcagga gttgccggtc
      481 ctcgaagggc ttggagagat agtcccgcgc gcccagcttc accgcgtgct gcacgtcggc
      541 tgagttgtgg ctggcggtca gcaccagagt cggcggggcg ggatcgggca ggtcggccat
      601 gcactccagc accccgaagc cgtcgatctc cggcatgttg aggtcgagca ccatcccgtc
      661 gtagggccgc tcgctgagtc ggctcagcgc ctcgacgccg ttccgcgccg tcaccacgag
      721 gtagccggcc agggtcagcc gggttgaaac cagctccagg atcgagacgt cgtcatccac
      781 caccaggatc cggcgcggcc cctcacgatg cagcggcata gggcctccct tcatctacgg
      841 cggacccgtc gtccatgacg cgcaacagcg cccggaacag atcggccggc gaggtcggct
      901 tgagcacgac cccctggaag cacaggtttt ccggcgcgct caggtccatg atcccgtccg
      961 ccgagaaggc caggaccggc atgtgctgat tggggccagg cagccggcgt atggcggccg
     1021 tggcggcgcg cccgtcgagg cccggcatgc gcaggtccat aaggatggcg tccaacggca
     1081 ggcgctgggc gatctcgacc gcctcgcgcc cgtcgtgaac ctcgctgacc tcgacgccga
     1141 ccgactccaa gatcgcccgg gcgagctcgc ggttcaccgc attgtcgtcc accaccagca
     1201 cccgcaggcc gtagagttcc gccaggtccg aagccctcgt ccccgtcgcc gcatcggcca
     1261 cgccgggcag ggccggcagg gtcaggcgga aggtcgatcc gcggcccacg cggctggtga
     1321 cgctcaccgc cccgcccatg gcctgcgcca ggccctggca gatggccagc cccaggcccg
     1381 agccgccctt ggtgcgggtc gaggagccgt cgatctgcga gaaccgctgg aagagcttgg
     1441 acttcgccgc ggccgcgatc ccggggccgg tgtcggccac ctcacagatg agccgctggt
     1501 ccgcgtcgta gctgagcgcc agggacaccc gtccccggtc ggtgaacttc accgcattgc
     1561 ccaccaggtt gatcaggatc tgccgcagcc ggtcctcgtc caggaccagg ctccgaggca
     1621 ggccgacagc ggcgtcgaat cgcaggtcga ggcccttggc gtccgcctgc atggcgaaca
     1681 tttccaggac ctcccgcgcg gtctgcccgg gaccggtagg ccgccggcgg atggtgatct
     1741 cgccggtctc cagcttcgag aagtccagga catcgttgat cacggccagc aaggcgcgcc
     1801 cggcgcctgc gatccgcccg atctggccct gggc
//
LOCUS       DATAJL010000007         3684 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_12960,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000007 DATAJL010000000
VERSION     DATAJL010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3684
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12960"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1474)
                     /locus_tag="VHN39_00075"
     CDS             complement(<1..1474)
                     /locus_tag="VHN39_00075"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX2814759.1"
                     /translation="MEHNIETDVLIVGAGPAGAASAVFLGGHGVRTLTISRHRGTADT
                     PRAHITNQRTMEALRDAGLEAACLDVASSADKIAHTFWLRSMAGEEIARSWAWGNDPE
                     RVGDYLAASPCGMTDFPQTRLEPILIAEATRLGGQVRFGWELDRFTQDADGVTAYVAD
                     RLTGRKVTIRARYMIGADGARSRVVEQLGLPLVGQEGLGAVFNVFCEVDLSEHVTHRQ
                     ASLFSVIQPGSSYWAPVAVWRMVRPWDQWLVGLIVPPAAGKPEPTQADFEARVRESAG
                     IPDLPVKILSTSMWTINDIYAERYVAGRVFCMGDAVHRHPPTNGLGSNTCVQDAFNLA
                     WKLALVIKGQAGPALLHSFEAERQPIGKQIVARANKSMGQNGKLWDMLGGGIHTEMPP
                     EAHAAVFDTPEGRAQLRAEIDVMRYEYHAQGVELSRDYVSGAVVHDGTEAPPPARDPE
                     LYYEPSTRPGAPLPHAWLGRRSPSPLVSTLDLAGKGGFTLF"
     gene            complement(1483..2460)
                     /locus_tag="VHN39_00080"
     CDS             complement(1483..2460)
                     /locus_tag="VHN39_00080"
                     /inference="COORDINATES: protein motif:HMM:NF013706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX2814760.1"
                     /translation="MGRLIVRYRQAEVVRWGELEGPPPTAADARIQVRPLAVEAHTTA
                     ELIATLADRQVGAGPAVEVLAGDLLSPVTADAQLFAQGLNYQSHAAEAQHAKRTSNLI
                     FAKASSSLTGPFSPIVRPPEVQLLDYEVEFGIVLRRDIGAGDAITDATVGDYVAGVVL
                     CNDVSARDTMFGTSFLQWYRGKGYRTFCPTGPVLLLLEPGDVADVLSRLDLKLWVNGD
                     LRQSATSAQLIWKPAETLAYIASTIDMRRGDMVLTGTPGGVTAPASPAMVEILKTHLL
                     ADDVRRDALRVEMTKGRPFLKPGDLVTATLAELDGISLGGLANPVIDAA"
     gene            2888..3502
                     /locus_tag="VHN39_00085"
     CDS             2888..3502
                     /locus_tag="VHN39_00085"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX2814761.1"
                     /translation="MSKLLLTSALAAVGLALAQPAAAQAVTADPAAVKSGAFKVEAFH
                     TQVGFTVSHLGISPFSGVFHDAAGTLTLNAADPGASKLNITLPVSSVITTAPVLDGML
                     KGKDWFDAATFPTATFASTQVRRTGANTAVIEGNLTLHGVTKPIRLEAQLVGSGVNML
                     DKAYSVGFTAKGVFKRSDFGIKTYLPAVGDDVELTIQAAFEAQP"
     gene            3534..>3684
                     /locus_tag="VHN39_00090"
     CDS             3534..>3684
                     /locus_tag="VHN39_00090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814762.1"
                     /translation="MNPPPASQGVTAKRYSTVAIVLHWLIAAAILLQVVLAWRMVGHN
                     TPEGFA"
BASE COUNT          556 a         1245 c         1302 g          581 t
ORIGIN      
        1 tgaacagggt gaagccgccc ttgcccgcca ggtcgagcgt cgagaccagc gggctcggcg
       61 agcgccggcc aagccaggcg tgcggcaggg gcgcgccggg gcgggtgctc ggctcgtagt
      121 agagttcagg gtcgcgggcc ggcggcgggg cctcggtccc gtcgtggacc acggcgccgg
      181 agacatagtc ccggctgagt tcgacgcctt gcgcatggta ttcgtagcgc atcacgtcga
      241 tctcggcgcg cagctgggcg cggccctccg gggtgtcgaa caccgccgcg tgggcctccg
      301 gcggcatctc ggtgtggatg cccccgccca gcatgtccca gagcttgccg ttctggccca
      361 tgctcttgtt ggcccgggcg acgatctgtt tgccgatcgg ctggcgctcg gcctcgaagc
      421 tgtggagcag ggcgggaccc gcctggccct tgatcactag ggccagcttc caggcgaggt
      481 tgaaggcgtc ctgcacgcag gtgttggagc ccaggccgtt ggtgggcgga tggcggtgca
      541 ccgcatcgcc catgcagaac acccgcccgg cgacgtatcg ctcggcatag atgtcgttga
      601 tcgtccacat ggaggtcgac aggatcttga ccggcaggtc cggaatgccc gcggattcgc
      661 gcacccgcgc ctcgaaatcg gcctgggtcg gctccggctt gccggccgcc ggcggcacga
      721 tcagcccgac cagccactgg tcccacggcc gaaccatgcg ccacacggcg acgggcgccc
      781 aataggagga gccgggctgg atcacgctga acagcgaggc ctggcggtgg gtgacatgtt
      841 ccgagaggtc gacctcgcag aagacgttga acaccgcgcc caggccctcc tggcccacca
      901 gcggcaggcc gagctgctcg accacgcggc tgcgcgcgcc gtcggctccg atcatgtagc
      961 gggcgcgaat ggtcaccttc cggccggtga gccggtcggc gacataggcg gtgacgccgt
     1021 cagcgtcctg cgtgaagcga tcgagctccc agccgaaccg cacctggccg ccgagacggg
     1081 tggcctcggc gatcaggatc ggctcgagcc gcgtctgcgg gaagtcggtc atgccgcagg
     1141 ggctggcggc caggtagtcg ccgacccgct ccggatcgtt gccccaggcc caggagcggg
     1201 cgatctcctc gccggccatg ctgcgcagcc agaaggtatg ggcgatcttg tcggcgctgg
     1261 aggcgacgtc gaggcaggcg gcctccaggc cggcatcgcg gagcgcctcc atggtgcgct
     1321 ggttggtgat gtgggcccgc ggcgtgtcgg cggtgccgcg atggcgcgag atcgtcaggg
     1381 tccgcacccc atggccgccc aggaagacgg cggaggcggc gcccgcgggg cccgcgccga
     1441 cgatcaggac atcggtctcg atgttgtgtt ccatggccga cctcacgctg cgtcgatgac
     1501 gggattggcg agaccgccga gcgaaatccc gtcgagctcg gccagggtgg cggtcaccag
     1561 gtcgccgggc ttgaggaatg gccggccctt ggtcatctcg acccgcagcg cgtcgcggcg
     1621 gacgtcgtcg gccagcaggt gggtcttgag gatctcgacc atcgccgggg aggccggggc
     1681 ggtgacgccg ccgggcgtgc cggtgagcac catgtcgccg cgccgcatat cgatggtcga
     1741 ggcgatgtag gccagggtct cggccggttt ccagatcagc tgggccgagg tggctgactg
     1801 gcgcaggtcg ccgttgaccc agagcttaag gtcgagccgg gagaggacgt cagccacgtc
     1861 gccgggctcc agcaacagga gaactgggcc ggtcgggcag aaggtgcggt agcccttgcc
     1921 gcggtaccac tgcaggaagc tagtcccgaa catggtgtcg cgggcggaga catcgttgca
     1981 gagcaccacg ccggcgacat agtcgccgac cgtggcgtct gtgatcgcgt cgccggcgcc
     2041 gatgtcccgg cgcagcacga tcccgaactc gacttcgtag tcgagcagct ggacctcggg
     2101 cgggcggacg atcgggctga acgggccggt cagcgaggag ctggccttgg cgaagatcaa
     2161 gttgctggtg cgcttggcgt gctgcgcttc ggcggcgtgg gactggtagt tgaggccctg
     2221 ggcaaacagc tgggcgtcgg cggtaaccgg gctaagcagg tcgccggcca aaacctcgac
     2281 tgccggcccg gccccgacct ggcggtcggc cagggtggcg atcagctcag cggtggtgtg
     2341 cgcttcgacc gccaacggcc gcacttgaat ccgcgcgtcg gcggcggtcg gcggcggccc
     2401 ctcaagttcg ccccagcgga cgacctcggc ctggcgatag cggacgatca gccttcccaa
     2461 tttgtcctcc tgcagaaacc gtctgtgggt cctgtcatcg ccacgcttgg catgcgccgc
     2521 cgcgggagtc cagattaaac tttacgatcg tgcaggatta taacgatccg aggggcggtc
     2581 cagggcatgg gccgcaggaa cgcgtcgacc gcggggcgat cgcggcctga tgggcgcgga
     2641 tgcttcaaac gttcctgtac agtcgtgaag gataatgacg ttccgcaaac tgcaacacca
     2701 cgtcgcggaa aagccgcttt ggtcgccttg ttagaaactg tacgaccgcc aagtaatagg
     2761 ttgcgttcgc tggggcggtc gccggggctc tcccagtcgt cttcgggcgc ggcggacggg
     2821 ccgcggttgc ggccgtgcgc gccgttcatt ccggacggcc cctccatcaa caaggagttt
     2881 tccgtccgtg tccaagctgc tgctcacctc cgccctggcc gctgtcggcc tggcgctcgc
     2941 ccaaccggcc gccgcccagg cggtcaccgc cgaccccgcc gccgtgaagt ccggcgcctt
     3001 caaggtcgag gccttccaca cccaggtcgg gttcacagtg tcccacctcg gcatcagccc
     3061 gttctccggc gtcttccatg acgcggcggg aacgctgacg ctgaacgccg ccgatccggg
     3121 cgcctcgaag ctgaacatca ccttgccggt gtcgtcggtg atcaccacgg cgccggtgct
     3181 cgacgggatg ctgaagggca aggactggtt cgacgccgcg accttcccga ccgcgacctt
     3241 cgcctcgacc caggtccgcc gcaccggcgc caacaccgcg gtgatcgaag gcaatctcac
     3301 cctgcacggc gtgaccaagc ccatccggct ggaagcgcag ctggtcgggt ccggcgtcaa
     3361 catgctcgac aaggcctatt ccgtcggctt caccgccaag ggcgtcttca agcgcagcga
     3421 tttcggcatc aagacctacc tgccggccgt gggcgacgac gtcgagctga cgatccaggc
     3481 ggcgttcgaa gcgcagccct gatccctaag ccgccgcccc gcccgaggtc gccatgaacc
     3541 ctccgcccgc ctcccaaggt gtcaccgcca agcgctactc gacggtggcg atcgtgctcc
     3601 actggctgat cgccgccgcc atcctgctgc aggtcgtcct ggcctggcgg atggtcggcc
     3661 acaacacgcc ggagggtttt gccc
//
LOCUS       DATAJL010000008         1771 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_12981,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000008 DATAJL010000000
VERSION     DATAJL010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12981"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..589
                     /locus_tag="VHN39_00095"
     CDS             <1..589
                     /locus_tag="VHN39_00095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HEX2814763.1"
                     /translation="PPPVTHGPPIANMCIISVENAIGASTVGRYVDTRMQQIVAQTNA
                     ELTSEKKAIDADAKTLEARRATLDQTTLDQQVSALQVRANALQRKAQLRDREISATEQ
                     KAVGRIGQEMEPLIRQVYQQKVCSVLLQRTAVVIANPAMDITPPVIAALNGKITQFAF
                     DRERLDGPQAAATGGVPPIVQTPGPTPRPTAPVKR"
     gene            628..1641
                     /gene="lpxD"
                     /locus_tag="VHN39_00100"
     CDS             628..1641
                     /gene="lpxD"
                     /locus_tag="VHN39_00100"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEX2814764.1"
                     /translation="MPDPRFFENLGPVTLSDLAALTGAELADPATGARRVSSVSILDS
                     AGPDTVTFVNGRKFLAQAGDTRAGACFVAAEHVGALPAGCAALVITSPQLGYALTAAR
                     LHRARIALGDKGVHPTAQIEPQVVLGPGVVIGAGAQVGRGTRIGANSVVGPGVAIGRH
                     CEISANVTIGFALIGDRVRILAGAAIGEPGFGATAGPKGLVDIPQLGRVILQDGVGVG
                     ANSCVDRGAFEDTVLGENTKIDNQVQIGHNVRVGRNCVMAAHTGISGSVTIGDGAQFG
                     GRAGVADHVTIGAGARIGAAAGVLKDVPAGETWGGFPARPMRQWMRENTWLTQRASRK
                     EGD"
     gene            1641..>1771
                     /locus_tag="VHN39_00105"
     CDS             1641..>1771
                     /locus_tag="VHN39_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     FabZ"
                     /protein_id="HEX2814765.1"
                     /translation="MSRKAPVGEAPSEIDITEILARIPHRIPFLLVDRCEDYVASQS"
BASE COUNT          297 a          620 c          598 g          256 t
ORIGIN      
        1 accgccgccg gtgacccacg gtccgccgat cgcgaacatg tgcatcatct ctgtggagaa
       61 cgcgatcggc gcctccaccg tcggccgcta tgtcgacacc cgcatgcagc agatcgtcgc
      121 ccagacgaac gctgagttga ccagcgaaaa gaaggccatc gacgcggacg ccaagaccct
      181 agaggcccgc cgcgcgacgc tcgaccagac cacgctcgac cagcaggtct ccgccctgca
      241 agtgcgcgcc aacgccctgc agcgcaaggc gcagcttcgc gaccgtgaga tctccgccac
      301 cgagcagaag gctgtgggcc gcatcggcca ggagatggag ccgctgatcc gtcaggtcta
      361 tcagcagaag gtctgttcgg tgctgttgca gcgcactgcc gtggtgatcg ccaacccggc
      421 gatggatatc accccgccgg tgatcgccgc cctgaacggc aagatcaccc agttcgcctt
      481 tgaccgtgaa cggctcgacg gaccgcaagc cgccgctacg ggcggggttc cgccgatcgt
      541 ccagaccccg ggcccgacgc cgcgtccgac cgctccggtc aagcgctaag tcccgcgctc
      601 aagagcgcgg gtcgccgcac gcaagccatg cccgatccgc gcttcttcga aaacctcggc
      661 cccgtcaccc tctccgacct ggcggcgctg acgggcgccg aactcgccga ccccgcaacg
      721 ggcgcgcggc gcgtgagctc cgtttcgatc ctggacagcg cgggacctga caccgtcacc
      781 ttcgtcaacg gccgcaagtt cctggcgcag gctggcgaca ccagggctgg agcctgtttt
      841 gtggcggccg agcacgtcgg cgccttgccg gccggctgcg ccgccctggt gatcacctcg
      901 ccgcaactgg gctatgccct gaccgcggcg cgcctgcatc gcgcgaggat cgcgctcggc
      961 gacaagggcg tgcatccgac cgcccagatc gagccgcagg tagtcctggg tccaggcgtg
     1021 gtgatcggcg ccggcgcgca ggtcggacgt gggacccgca tcggcgccaa cagcgtggtt
     1081 ggcccgggag tcgccatcgg ccgccactgc gagatctccg ccaacgtcac cattggcttc
     1141 gcgctgatcg gcgaccgcgt gcgcatcctg gctggggccg ccatcggcga gccgggcttc
     1201 ggcgcgaccg caggtcccaa ggggctcgtc gacatcccgc agcttggccg cgtgatcctg
     1261 caggacggag tcggcgtcgg cgccaacagt tgcgtcgacc gaggcgcctt tgaggacacg
     1321 gtgctcgggg agaacaccaa gatcgacaat caggtgcaga ttggacacaa cgtgcgggtc
     1381 gggcgtaact gcgtcatggc ggcccacaca gggatttccg gcagcgtgac catcggcgat
     1441 ggcgcccaat tcggaggccg cgccggcgtg gccgaccacg tcaccatcgg cgccggcgct
     1501 cggatcggcg cggcggcggg ggtgctgaag gatgttccgg ccggcgagac ctggggcggt
     1561 ttcccggcca ggccgatgcg gcaatggatg cgggaaaaca cgtggctcac ccagcgcgcg
     1621 agccgcaaag agggggactg atgagccgca aggcgccggt gggcgaagct ccctctgaaa
     1681 tcgacattac ggagattttg gcgcggattc cgcaccggat tccctttctg ctggtggacc
     1741 gctgcgagga ctacgtcgca agccaatcga t
//
LOCUS       DATAJL010000009         5796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_103191,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000009 DATAJL010000000
VERSION     DATAJL010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5796
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103191"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VHN39_00110"
     CDS             complement(<1..332)
                     /locus_tag="VHN39_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2814766.1"
                     /translation="MRPSSAAAGFRALGGAILLALAASAVLAQPPAPPPARTAATPKP
                     GYVVPPENSAGLYPVGGEPIFKAKCAQCHEPAVGRAPSKELLAGRSPEEVYDALTIGA
                     MKPMAQGMS"
     gene            complement(344..2287)
                     /locus_tag="VHN39_00115"
     CDS             complement(344..2287)
                     /locus_tag="VHN39_00115"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2814767.1"
                     /translation="MSSLRIWLAGLALAGVSSLAATAQAQPAASDGAAIYETRCKMCH
                     EGGAPRAPSRADLGQRAPADIVQTLTSGIMVPMAQGLSDADKQAVAAYLTAATPTAAA
                     ATPSRPTGQEMPQVAVKGPSAPDPKCASNPPIQAGAGDWSSMGIDDTSTRFQRHPGLT
                     AAEVPRLKVKWAFSMTGGGQPTVVGDWLFVTNRSGKFYALDAKSGCVRWSVDDLVSRA
                     TPMVIRSAISPSGWLTVVSESDRIVRAFDAQTGKQLWKSVQLEAHPFSVLTGSPVIVG
                     DRLIVPISSIEEAAAMSKAYGCCTFRGSVAELDLATGKLLWKTSMIGEPQQAIREKGG
                     GVKVQGPAGAAVWAAPSIDRKRGLAYVVTGDSYTDVDTVGPDAVVALDIKTGAIRWRR
                     QVTQHDNFVMGCGPASASGNCPTPLGPDYDFGATPILMTLKGGKQVLVAGQKSGIVYG
                     LNPDTGALLWKTAVGVGSAIGGVEWGIGANDTQVFVPIADFGPVMAELRPGSFGPAGG
                     PAAKPGLYALDPATGTIVWATPAPKARCVYASDRGKPSLCVRSQPAAPAVIPGAVFEG
                     GLDGWFRAYDAKTGKIVWEDSTTSRTYDTVNGIKGQPGGGIDGMGPTVSGGMVYITSG
                     NNGAARVGSNGVNVLLAYSIDGK"
     gene            complement(2366..3484)
                     /locus_tag="VHN39_00120"
     CDS             complement(2366..3484)
                     /locus_tag="VHN39_00120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814768.1"
                     /translation="MRKITQALALFAGASLLLCGADAAAQKPAAVKATPVALDPTITP
                     KGWAAPKNAMGQPDLSGYWSNATMTPLMRNSRLTDKATIPAAQAAQLEKVFADALAAA
                     DAPTDQKKGPGAVTDPNSPEAQLVKIRPDFAAAGGDVGGYNTFWIDPGNHMMEVNGEY
                     RTSIITTPNGLPPKRKDGAPAGRGFPRDVYDSYENRGLGERCIMGFGANAGPPMLANG
                     YYNNNYNIVQSPDAVAIQVELIHDTRIVRLKGGHRTDGVRQWMGDSIGHFEGNTLVVE
                     TTNIPQGQAFVGSWKNLKVTEWFTRVSPTRLNYKFQVEDPDTWDKPWGGEYDFSPLHG
                     IVYEYACHEGNYALPAILAGARRQEREAAASKPASGGQ"
     gene            complement(3537..5612)
                     /locus_tag="VHN39_00125"
     CDS             complement(3537..5612)
                     /locus_tag="VHN39_00125"
                     /inference="COORDINATES: protein motif:HMM:NF015657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814769.1"
                     /translation="MKTSQRTVVGLGALAAAASALALAASPHGVTQAKAEATKVAGPA
                     TVDDFMLADQNLLARQLYRMSDDKAVVLLTYASGDKQLHADAKALMALKAAYGKGVDM
                     LAVDSRIGDRRDPVIADAKAAGLEMPILFDYEQLVGEELGVTRAAEVIVIDPRGWTIA
                     YRGPVDGAKAAIDALTAGQKVALTSHEAKGELIAFPERAHANTFATISYARTIAPIVQ
                     AKCATCHQPGGIGPMPLNTYEQIKGFSPMIREVIRTHRMPPYLADETVGAFQDDDRLT
                     PDQMKTLVHWIDAGAPRGAGDDPLKKIKFQAPDWPLGKPDVVLNVPEVKIAATGIMDY
                     QHPVVANAMAEGRWMKATTFRVSDRQVVHHILTGVVATDHAGETFNESSWGASLGGYG
                     PGRGSNIQPVDTGVWVPPSGGVGFQNHYTPYGKETTEKTQMGIYFYPKGQEPKYVLRT
                     FGIFDFSIEIPADEEFHKETSYIEFPKEAILYGITPHAHMRGQSTNVSILYPNGKEEK
                     LLSLPRYDFNWQYEYFLKTPLKVPAGAKIIARWTYDNSTRNPGNPDHAKTVYWGEQTK
                     DEMMATYLHYRWVDETVQHQTPEYEKMLQANLMMGVLDDNMDGKIELSELKGGPQGPA
                     SMLKKYFALIDTNHDGALDATELANASKLLPKRGPAKPAPAPAAQPMPAGSPAEAAND
                     SKTAPAASR"
BASE COUNT          797 a         1900 c         2073 g         1026 t
ORIGIN      
        1 gacatgccct gcgccatggg cttcatcgcc ccgatggtca gggcgtcata gacctcctca
       61 ggagaccggc cggccaacag ctccttgctg ggtgcgcggc ccacggccgg ctcgtgacac
      121 tgggcgcact tggccttgaa gatcggctcg ccaccgaccg gatagaggcc ggccgagttc
      181 tccggcggga ccacatagcc gggcttgggt gtcgcggccg tccgggccgg aggtggcgcc
      241 ggcggctggg ccaggaccgc ggacgcggcg agcgccagga ggatagcgcc ccctaacgcc
      301 cggaaccccg ccgccgccga gcttggccgc acggacgcgc gccctatttg ccgtcgatcg
      361 aataggccag cagcacattg acgccgttgg agccgacccg ggccgcgcca ttgttgccgc
      421 tggtgatgta gaccatgccg cccgagaccg tcggacccat gccgtcgatg ccgccgccgg
      481 gttggccctt gatgccgttg acggtgtcgt aggtccgcga ggtggtggaa tcctcccaga
      541 cgatcttgcc ggtcttggcg tcataggccc ggaaccagcc gtcaaggccg ccttcgaaga
      601 ccgcgccggg aatgacggcc ggcgccgcgg gctggctgcg gacgcagagg gagggcttgc
      661 ccctgtcgct ggcgtagaca caacgggcct tgggcgcggg cgtcgcccag acgatggtcc
      721 cggtggcggg atcgagcgca tagaggccgg gcttggccgc cgggccgccg gccggcccga
      781 acgagccggg ccgaagttcc gccatcaccg ggccgaagtc cgcgatcggc acgaagacct
      841 gggtgtcgtt ggcgccgatg ccccattcga cgccgccgat cgccgagccg acgccgacgg
      901 cagtcttcca caacagcgcg ccggtgtcgg ggttgaggcc gtagacgatg cccgacttct
      961 ggccggccac cagcacctgc ttgccaccct tcagtgtcat caggatcggg gtggccccaa
     1021 agtcatagtc cggacccagc ggggtcggac agttgccgga ggcggacgcc ggcccgcagc
     1081 ccatgacgaa gttgtcgtgc tgggtcacct gccggcgcca gcggatggcg ccggtcttga
     1141 tgtccagcgc gacgacggcg tcgggtccga cggtgtcgac gtcggtgtag ctgtcgccgg
     1201 tcacgacgta agcgaggccg cgcttgcggt cgatcgaggg cgcggcccag accgccgcgc
     1261 cggccgggcc ctggaccttc acgccgccac ccttctcgcg gattgcctgc tggggctcgc
     1321 cgatcatcga ggtcttccag aggagtttgc cggtcgccag gtccagctcc gccaccgaac
     1381 cgcggaacgt gcagcagccg taggccttgc tcatggccgc ggcctcctcg atcgaggaga
     1441 tcggcacgat caggcggtcg cccacgatca ccggcgagcc ggtgagcacg gagaacgggt
     1501 gggcctcgag ctggacgctc ttccacagct gcttgccggt ctgggcgtcg aaggcgcgca
     1561 cgatccggtc gctttcgctg accaccgtca gccagccgct gggcgagatc gctgacctga
     1621 tgaccatggg cgtcgcgcgc gagaccaggt cgtcgaccga ccagcggacg cagccgctct
     1681 tggcgtccag cgcgtagaac ttgcctgagc gattggtgac gaagagccag tcgccgacca
     1741 ccgtgggctg gccgccgccg gtcatcgaga aggcccactt caccttcagc ctcggcacct
     1801 cggccgccgt caggccggga tggcgctgga agcgggtgga ggtgtcgtcg atccccatgc
     1861 tggaccagtc gcctgccccg gcctggatcg gcggattgga ggcacacttg ggatcaggcg
     1921 cgctcggtcc tttgacggcg acttgcggca tctcctggcc ggtggggcgt gaaggcgttg
     1981 cggccgcagc cgttggcgtg gcggcggtca gataggcggc gacggcctgc ttgtcggcat
     2041 cggacaggcc ctgagccatg gggaccatga tcccgctggt gagcgtctgg acgatgtcgg
     2101 ccggcgcgcg ctggccgagg tccgcccggc tgggcgcccg cggcgcgccg ccttcgtggc
     2161 acatcttgca gcgggtctcg tagatcgccg cgccgtcgga cgccgccggc tgggcctggg
     2221 cggtggcggc aaggctggaa acgcccgcaa gcgcgagccc cgcaagccag atgcgaagtg
     2281 acgacaagaa cctatccccc ataccgcttt tatgattcag gcgagccgca gaatgccccg
     2341 ccgaagagcc gccgtcaccc cgtcgtcact ggcctccgct ggccggtttg gaggccgcgg
     2401 cttccctctc ctgccggcgc gcgccggcca ggatcgccgg gagggcgtag ttgccttcgt
     2461 ggcaggcgta ttcgtagacg atcccgtgca gcggtgagaa gtcgtattcg ccgccccagg
     2521 gcttgtccca ggtgtcgggg tcctcgacct ggaatttgta gttgagccgc gtaggcgaca
     2581 cgcgggtgaa ccactcggtc accttcaggt ttttccagga gccgacgaag gcttggccct
     2641 gcgggatgtt ggtggtctcc accacgagcg tattgccctc gaagtggccg atgctatcgc
     2701 ccatccactg gcgcaccccg tcggtgcggt ggccgccctt cagtcgcacg atccgcgtgt
     2761 cgtggatcag ctccacctgg atcgccaccg cgtcgggcga ctgcacgatg ttgtagttgt
     2821 tgttgtagta gccgtttgcc agcatgggcg ggccggcgtt ggcgccgaaa cccatgatgc
     2881 agcgctcgcc cagtccgcgg ttctcgtagc tgtcgtagac gtcccgggga aagccccggc
     2941 cggccggggc gccatctttg cgcttcggcg gcaagccgtt gggagtggtg atgatcgagg
     3001 tgcggtactc gccgttgacc tccatcatgt ggttgcccgg atcgatccag aaggtgttgt
     3061 agccgcccac gtcgccgccg gcggcggcga agtcgggccg gatcttgacg agctgcgcct
     3121 cgggcgagtt cgggtcggtg acggcgccgg gacccttctt ctggtcggtg ggcgcgtcgg
     3181 cggcggccag ggcgtcggcg aagaccttct ccagctgcgc ggcctgggcg gcgggaatgg
     3241 tcgccttgtc cgtaagcctg gagttgcgca tcagcggcgt catggtcgcg ttggaccagt
     3301 agccggacag gtccggctgg cccatggcgt tcttcggcgc cgcccagccc ttcggcgtga
     3361 tggtggggtc gagcgcgacg ggcgtggctt tcacggccgc gggtttctgg gccgccgcgt
     3421 cggcgccgca gagaagcagg cttgcgccgg caaacagggc tagggcctgg gtgatcttcc
     3481 gcatggtttc ctcccgcccg ttcgggcttg ggtttggcct cgttgtccgg cgtccgtcag
     3541 cgcgaggctg cgggcgccgt cttggaatcg ttcgccgcct ccgccggaga ccccgccggc
     3601 atcggttgcg ccgccggcgc gggcgccggc ttggccgggc cgcgcttcgg caacagcttg
     3661 gaggcgttgg cgagttcggt cgcgtcaagc gcgccatcgt ggttggtgtc gatgagcgcg
     3721 aagtatttct tcagcatgga ggctgggcct tgcgggccgc ccttcagctc ggagagctcg
     3781 atcttgccgt ccatgttgtc gtccaggacg cccatcatca ggttggcctg gagcatcttc
     3841 tcgtactccg gcgtctggtg ctgaaccgtc tcgtccaccc agcgatagtg caggtaggtg
     3901 gccatcatct cgtccttggt ctgctcgccc cagtagaccg tcttggcgtg gtcgggattg
     3961 ccgggattgc gggtcgagtt gtcgtaggtc cagcgcgcga tgatcttggc gcccgcgggg
     4021 accttcagcg gcgtcttcag gaagtactcg tactgccagt tgaagtcgta gcgcggcagc
     4081 gacagcagct tctcttcctt gccgttggga tagaggatcg aaacattggt ggactggccg
     4141 cgcatgtggg cgtgcggggt gatgccgtag aggatcgcct ccttcgggaa ctcgatgtac
     4201 gaggtctcct tgtggaactc ctcgtccgcg gggatctcga tcgagaaatc gaagatgcca
     4261 aaggtgcgca gcacgtactt cggctcctgc cccttggggt agaagtagat ccccatctgg
     4321 gtcttctcgg tcgtctcctt gccatagggt gtgtagtggt tctggaagcc cacgccgcct
     4381 gacggcggca cccagacgcc agtgtcgacg ggctggatgt tggagccgcg gcccggcccg
     4441 tagccgccca gcgaagcgcc ccaggaactt tcgttgaagg tctcgccggc atggtcggtg
     4501 gccaccaccc cggtcaggat gtggtgcacc acctggcggt cggagacgcg gaaggtggtg
     4561 gccttcatcc agcgaccctc ggccatggcg ttggccacga ccgggtgctg gtagtccatg
     4621 atgccggtgg cggcgatctt cacctcaggc acgttcagca ccacgtcggg cttgccgagc
     4681 ggccagtccg gcgcctggaa cttgatcttc ttcagcgggt cgtcgcccgc gccgcgcggc
     4741 gcgccggcgt cgatccagtg gaccagggtc ttcatctggt cgggcgtcag gcggtcgtcg
     4801 tcctggaagg cgcccacggt ctcgtcggcc aggtagggcg gcatgcggtg ggtgcggatc
     4861 acctcgcgga tcatcggcga gaagcccttg atctgctcgt aagtgttcaa gggcatcggg
     4921 ccgatcccgc cgggctggtg gcaggtggcg catttggcct ggacgatggg cgcgatagtc
     4981 ctggcgtagg aaatggtcgc gaaggtgttg gcgtgggcgc gttccgggaa ggcgatcagt
     5041 tcgcccttcg cctcgtggct ggtcagggcg actttctggc cggcggtgag cgcgtcgatc
     5101 gccgccttcg ccccgtcgac cgggccgcgg taggcgatgg tccagccgcg cgggtcgatg
     5161 acgatgacct cggcggcgcg ggtgacgccc agttcctcgc cgaccagctg ctcgtagtcg
     5221 aacaggatcg gcatctccag gcccgcggcc ttggcgtcgg cgatcaccgg atcgcgacgg
     5281 tcgccgatcc ggctgtcgac ggccagcatg tcgacgccct tgccgtaggc ggccttcagc
     5341 gccatcagcg ccttggcgtc ggcgtgcagc tgcttgtcgc cactcgcata ggtcagaagc
     5401 accacggcct tgtcgtcact catccggtag agttggcggg cgagcaggtt ctggtcggcc
     5461 agcatgaagt cgtcgaccgt ggccgggccc gcgaccttgg tcgcctcggc cttggcctgg
     5521 gtcacgccgt gcggagaagc ggccagggcc aaagcgctcg cggcagccgc cagagcgcca
     5581 aggccgacca ccgtccgttg cgaagtcttc atgccgttcc tcccgggcgc ggtactcgaa
     5641 ggtccgcgct gcgccagttc cttaggcctc aaacattgca gagccatgtc cggcgcgcct
     5701 gcgatacagg gtggatcata gcggattttc accctccacc aagctcgcag gccggggcgg
     5761 cgcgctcagc gggacgctgc gggcgccgcc ttggag
//
LOCUS       DATAJL010000010         2445 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_77507,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000010 DATAJL010000000
VERSION     DATAJL010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77507"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1037
                     /locus_tag="VHN39_00130"
     CDS             105..1037
                     /locus_tag="VHN39_00130"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX2814770.1"
                     /translation="MNHHHDNDRRGFLKCMAWAGTGALFTASGGLMSSISLDQAMAAP
                     AKAKGFTFLQISDSHVGFAKPANPDAKATYQEAVSKIIAMPQKPDFIIHTGDITQLSK
                     DSEFDDADQIIKQAGLAVFHVPGEHDMLDEGAGKAYLDRYGKGTKGAGWYSFDHKGVH
                     FVALINVVNLKAGGMGSLGGDQLEWLEKDLAGRPSSQPIVVFAHIPLWTVYADWGWGT
                     DDAAQALTYLKRFGSVTVLNGHIHQITQKVEGNISFHTARSTAFPQPVGGQGPSPGPL
                     KVPTEQLHSMLGITTASFVRGQDQIALIDATLAT"
     gene            1074..1430
                     /locus_tag="VHN39_00135"
     CDS             1074..1430
                     /locus_tag="VHN39_00135"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin family copper-binding protein"
                     /protein_id="HEX2814771.1"
                     /translation="MFKTLKAGALALALSLGAAASVAVSGPAVSAAQPAGPTVRIDNF
                     VFGPEALTVAVGTTVTWINQDDIPHTVVANDKSFKSKVMDTDERFSFTFTKPGEYGYF
                     CSLHPHMVGKVIVKAG"
     gene            1499..2086
                     /locus_tag="VHN39_00140"
     CDS             1499..2086
                     /locus_tag="VHN39_00140"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2814772.1"
                     /translation="MSDRGSDARGDEARQFRALILPHMDGAYNFARYLARDATAAEDI
                     VQEAFLRAFRAFPTYRGGAPKAWLFAIVRNCFLNWAGQRSSSARAVIDEGALSEAQSL
                     ALANVADEDQDTPEAALLRRREIETVRAVIENLPEPFRETLVLREMEELSYKEIAILT
                     AAPIGTVMSRLARARQMLSDMLLPDGVPAMREIQR"
     gene            2083..>2445
                     /locus_tag="VHN39_00145"
     CDS             2083..>2445
                     /locus_tag="VHN39_00145"
                     /inference="COORDINATES: protein motif:HMM:NF024881.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HEX2814773.1"
                     /translation="MSACPDKTALLHGLLDDELDAVNAAACEAHLKTCEACDAEFRRL
                     QALRDMMGAPGVAYRAPDRLRAGIEAVLAAETAQAPKARRRLAAWTAGGVGGVGGLLA
                     AGLAVMLVLPQMTEAGVER"
BASE COUNT          424 a          869 c          804 g          348 t
ORIGIN      
        1 gcccggcgcc ccctcaaccc cattcaaaag cgaaataccg accaccggga ataaagccga
       61 cccgtgggcg gtctcacctg acaacctgat ccgaggacct tcccatgaac caccaccacg
      121 acaatgaccg ccgcggcttc ctgaagtgca tggcctgggc cgggactggc gccctgttca
      181 ccgcgagcgg cggcctgatg agctccatca gcctggacca ggcgatggcc gcgccggcga
      241 aggcgaaggg cttcaccttc ctgcagatca gcgacagcca cgtgggcttt gccaagcccg
      301 ccaaccccga cgccaaggcc acctaccagg aggcggtgag caagatcatc gccatgcctc
      361 agaagcccga cttcatcatc cacaccggcg acatcaccca gctctcgaag gactccgagt
      421 tcgacgacgc cgaccagatc atcaaacagg ccggcctcgc cgtcttccac gtcccgggcg
      481 agcacgacat gctcgatgag ggcgccggca aggcttacct cgaccgctat ggcaagggga
      541 cgaagggcgc cggctggtac agcttcgacc acaagggcgt gcacttcgtg gccctgatca
      601 atgtcgtgaa cctgaaggcg ggcggcatgg gcagcctcgg gggcgaccaa ctcgaatggc
      661 tcgagaaaga cctggccggg cggccgtcgt cgcagccgat cgtggtcttc gcccatatcc
      721 cgctctggac cgtctacgcc gactggggct ggggcaccga cgatgcagcc caggcgctga
      781 cctatctgaa gcgcttcggc tcggtgaccg tgctgaacgg ccacatccac cagatcaccc
      841 agaaggtgga ggggaacatc agtttccaca cagcccgctc caccgccttc ccccagccgg
      901 tgggcggcca gggcccctcg cccggcccgc tgaaggtccc gaccgagcag ctgcattcca
      961 tgctggggat caccaccgcc agcttcgtcc gcggccagga ccagatcgcc ctgatcgacg
     1021 ccaccctggc gacctgagcc caagccaaca ttacctggag aacggattcc ttcatgttca
     1081 agaccctcaa ggcgggcgcc ctggcgcttg ccctcagcct cggcgcggcc gcctcggtcg
     1141 ccgtcagcgg cccggcggtc tccgccgccc aacccgccgg accgaccgtc cggatcgaca
     1201 acttcgtctt cggcccggag gccctgacgg tcgccgtcgg gaccacggtc acctggatca
     1261 accaggacga catcccgcac acggtggtgg ccaacgacaa gagcttcaaa tccaaggtca
     1321 tggacaccga cgagcggttc tccttcacct tcaccaagcc cggcgagtac ggctacttct
     1381 gctcgcttca cccgcatatg gtgggcaagg tgatcgtgaa ggcgggctag ggagcgatgc
     1441 gggcggagcg atgacccaag ccgcaagggg ggggaagcca ttcttccggc cgcacctggt
     1501 gtccgaccga gggtccgacg cgcgcggcga tgaggcgcgg cagttccgcg cgctgatcct
     1561 gccgcacatg gacggcgcct ataacttcgc ccgctatctg gcccgcgacg cgaccgcggc
     1621 ggaggacatc gtgcaggagg ccttcctgcg cgccttccgg gcctttccga cctaccgcgg
     1681 cggcgcgccc aaagcctggc tgttcgccat cgtgcgcaac tgtttcctca actgggcggg
     1741 gcagaggtcg agctcggcgc gggccgtgat cgacgagggg gcgctatcgg aggcgcagtc
     1801 cctggcgctg gccaatgtcg ccgacgagga ccaggacacg ccggaggcgg cgctgctgcg
     1861 ccggcgcgag atcgagaccg ttcgcgcggt gatcgagaac ctgcccgaac cgttccgcga
     1921 gaccctggtg ctgcgcgaga tggaagagct cagctacaag gagatcgcca tccttaccgc
     1981 cgcccccatc ggcacggtga tgtcgcgcct ggcgcgcgcc cgacagatgc tcagcgacat
     2041 gttgctgccg gacggagtcc cggcgatgcg ggagatccag cgatgagcgc ctgtcccgac
     2101 aagaccgccc tgctgcatgg tctgctcgac gacgagctcg acgccgtcaa cgccgcggcc
     2161 tgcgaggcgc acctgaagac ctgcgaggcc tgtgacgcgg agttccggcg gttgcaggcg
     2221 ctgcgcgaca tgatgggggc gcccggcgtg gcgtatcgcg cgccagaccg cctgcgggcc
     2281 gggatcgagg ccgtgctggc tgccgaaacg gcgcaagcgc ctaaggcccg gcgccgcctc
     2341 gcggcctgga cggcgggcgg cgtcggcggc gtgggcggcc tgctggccgc gggcctggcc
     2401 gtgatgctgg tcctgccgca gatgaccgag gcgggcgtcg aacgc
//
LOCUS       DATAJL010000011         2011 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38830,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000011 DATAJL010000000
VERSION     DATAJL010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38830"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(275..1294)
                     /gene="ilvC"
                     /locus_tag="VHN39_00150"
     CDS             complement(275..1294)
                     /gene="ilvC"
                     /locus_tag="VHN39_00150"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEX2814774.1"
                     /translation="MRVYYDRDADLSRILDKKIAIVGYGSQGRAHALNLKDSGVKNVV
                     VGLKAGSATAKKVEADGLKVMTVADAAKWADLLMVLAPDELQRDIYKADIEPNLRDGA
                     ALLFAHGLNVHFGLIEPKSTVDVLMVAPKGPGHTVRGEYLKGGGVPCLIAVHQDATGG
                     ALDLGLAYASAIGGGRSGVIETNFREECETDLFGEQAVLCGGLVELIRAGFETLVEAG
                     YAPEMAYFECLHEVKLIVDLIYEGGIANMNYSISNTAEYGEYVSGPRVVTAATKLEMK
                     AILDDIQSGRFVRDWMNENAAGQASFKATRRRGSEHQIEEVGARLRAMMPWITKNALV
                     DTARN"
     gene            complement(1400..1900)
                     /locus_tag="VHN39_00155"
     CDS             complement(1400..1900)
                     /locus_tag="VHN39_00155"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2814775.1"
                     /translation="MSERRQDILIRAMEPADLPDITEAWNQPQAYAGTLQLPFTSLEA
                     RQQRYAANAGATRLVAEIEDKVIGMLGLHREADRRAHAASIGMAVHDAYAGRGVGAAL
                     MAAIIDLADNWLQIKRLELSAYADNARAIALYERCGFEPEGLLRAYAWRNGQYVDAVT
                     MARLRL"
BASE COUNT          313 a          655 c          683 g          360 t
ORIGIN      
        1 ctgaccgagg tggcgcgccg ggttcggaag caccgcgcgc ccgacgtccg cggccgccca
       61 gccgagcttc tccaggacga actcgaaggg gttctcgatg tggttatcag cgtgatcttc
      121 gcgcgccatg cgtctgtctc ccggacctgt ggcctggagt ggcggcgacg gttcaggccc
      181 gtggcaggcc acaacccaga agaaaccgaa agcaccttag cacgggagca acccgacgtc
      241 ctctcccccg cgaggaagag aggatcttgc gcggtcagtt tctggccgtg tccaccagcg
      301 cgttcttggt gatccagggc atcatggcgc gaagccgggc gcccacttcc tcgatctggt
      361 gctcggaacc ccggcggcgc gtggctttga agctggcctg gccggcggcg ttttcgttca
      421 tccaatcgcg gacgaagcga ccggactgga tgtcgtcgag gatggccttc atctcgagct
      481 tggtggccgc ggtgaccact cgcgggccgg acacgtactc gccgtactcg gcggtgttgg
      541 agatcgagta gttcatgttg gcgatgccgc cctcgtagat caggtcaacg atcagcttca
      601 cctcgtgcag gcactcgaaa taggccatct cgggcgcgta gccagcctcc accagggtct
      661 cgaagccggc gcggatcaac tcgacgagcc cgccgcagag caccgcttgt tccccgaaaa
      721 gatccgtctc gcattcctcg cggaagttcg tctcgatgac gccggagcgc ccgccgccga
      781 tggccgacgc ataggccagg ccaaggtcaa gcgcgccgcc ggtggcgtcc tggtgcaccg
      841 cgatcaggca gggcacgccg ccgcccttga ggtactcgcc gcgcaccgtg tggccggggc
      901 ccttgggcgc caccatcagg acgtcgaccg tggacttggg ctcgatcagg ccgaagtgga
      961 cgttgaggcc atgggcgaac agcagcgccg cgccatcgcg caggttcggc tcgatgtcgg
     1021 ccttgtagat gtcgcgctgc aactcgtcgg gggcgagcac catcagcagg tcggcccact
     1081 tggcggcgtc ggcgacggtc atcaccttca ggccgtcggc ctcgaccttc ttggcggtgg
     1141 cggagcccgc cttcaggccc acgaccacgt tcttgacgcc cgagtccttg aggttcagcg
     1201 cgtgcgcccg gccctgcgag ccatagccta caatggcgat cttcttgtcc aggatgcggg
     1261 aaaggtcggc gtcgcggtca tagtagacgc gcatgattgt tctcctgggt ggtcaagaag
     1321 gtatgggtcc gcgcaacgca ggcgcggcaa agcgccggct ttccagcggt tttttgctca
     1381 aaggtcaagg cgcgcgaggt cacagcctga gcctcgccat ggtcacagcg tccacatact
     1441 gaccattccg ccaggcgtag gcgcggagca ggccctccgg ttcgaagccg cagcgttcgt
     1501 agagcgcgat ggcgcgggca ttgtccgcat aggcgctgag ttccagccgt ttgatctgca
     1561 gccagttgtc ggccaggtcg atgatggccg ccatcagcgc cgcgcccact ccgcggcccg
     1621 cgtaggcgtc gtgcacggcc atgccgatgg aggcggcatg cgcgcgccgg tcggcctcgc
     1681 ggtgcaggcc gagcatgccg atgaccttgt cctcgatctc ggccaccagg cgagtcgcgc
     1741 cagcgttcgc ggcatagcgc tgctgccgcg cctccagcga ggtgaagggc agttgcaggg
     1801 tgccggcgta ggcctgcggc tggttccagg cctcggtgat gtcgggcagg tccgcaggct
     1861 ccatggcccg gatcaggatg tcttgtcgtc gttcgctcat atcgggtctc cgtttccaaa
     1921 tcggacgggg acctatgaaa aagccccgtc cggtgtccgg cggggctggt cgaggcggtc
     1981 tgtgctttgg cggaagttcc tagcgcacga c
//
LOCUS       DATAJL010000012         1678 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25920,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000012 DATAJL010000000
VERSION     DATAJL010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1678
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25920"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..559
                     /locus_tag="VHN39_00160"
     CDS             <1..559
                     /locus_tag="VHN39_00160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814776.1"
                     /translation="VWVRPARSVRQSVVRITLRRDGNAFVQARAGLACCDAAIARRMG
                     FDTELPANQAVALRALKANPLWAAPRDVQVFEGPDLAEGLCIDGTAYDLTLMIAGRAR
                     SLRRACDSPAIGQAADVLEPVVRAALGYDPRFDVIFPGGFDLAKARAAYRDLIAHGGA
                     LKADRKARSQPPGVEPAPDAGPQAP"
     gene            complement(556..1158)
                     /locus_tag="VHN39_00165"
     CDS             complement(556..1158)
                     /locus_tag="VHN39_00165"
                     /inference="COORDINATES: protein motif:HMM:NF016189.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein IspZ"
                     /protein_id="HEX2814777.1"
                     /translation="MKNLLFAAKPLVLDLISTLVFVALSAITHNVILATVVAMAAGGA
                     RVVWLRMKGERVNAMQWMSLGLVVVFGAATLFTNDPRFMMGKPTIIYILVGAAMLERG
                     WMLPYLPPAAREHLEESVMIGWGYVWAGLMFATAALNAFFALATSLEVWSAFIAIFPA
                     ASKAALFAVQYLSIRALAIRNARAREALALAAAPQDLMAA"
     gene            1289..1650
                     /gene="ssrA"
                     /locus_tag="VHN39_00170"
     tmRNA           1289..1650
                     /gene="ssrA"
                     /locus_tag="VHN39_00170"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01849"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="alphaproteobacterial-type; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF01849"
BASE COUNT          281 a          584 c          550 g          263 t
ORIGIN      
        1 ggtctgggtc aggcccgcgc gcagcgtgcg ccagagcgtg gtgcggatca ccctgcgccg
       61 cgacggcaac gcctttgtcc aggcccgcgc gggcctggcc tgctgtgacg cggcgatcgc
      121 gcggcgaatg ggtttcgaca ccgaattgcc ggccaaccag gctgtggcgc tgcgggcgct
      181 gaaggccaat cctctgtggg ccgctccgcg cgacgtgcag gtcttcgagg ggccggacct
      241 cgcggagggc ctctgcatcg acggcaccgc ctacgacctg acgctgatga tcgccggccg
      301 cgcgcgctcg ctccgccggg cctgcgacag ccccgccatc ggacaggcgg ccgacgtcct
      361 ggagcccgtc gtgcgcgccg ccctgggtta cgatccccgg ttcgacgtga tcttccccgg
      421 cggcttcgat ctcgccaagg cccgagccgc ctaccgcgac ctgatcgccc acggcggggc
      481 gctgaaggcg gaccgcaagg cccggagcca gccgcccggc gtcgagcccg cgcccgacgc
      541 cggcccgcaa gcgccctagg ccgccatcaa gtcctgtggc gccgcggcca gggccagggc
      601 ttcccgagca cgcgcgttgc ggatcgccag cgcgcggatc gacaggtact ggaccgcgaa
      661 cagcgccgcc ttagaggccg ccgggaagat ggcgatgaag gcgctccaga cctcgaggct
      721 ggtggccagc gcgaagaagg cgttgagcgc agcggtggcg aacatcaggc cggcccagac
      781 atagccccag ccgatcatca ccgactcttc caggtgctcg cgggccgccg gcggcaggta
      841 gggcagcatc cagccgcgtt ccagcatggc cgcgccgacc agaatgtaga tgatcgtggg
      901 cttgcccatc atgaagcgcg ggtcgttggt gaagagggtc gcggcgccga acaccaccac
      961 caggcccaga ctcatccact gcatggcgtt cacgcgctcg cccttcatcc gcagccagac
     1021 gacccgcgcg ccgccggccg ccatggcgac gaccgtggcc aggatcacgt tgtgggtaat
     1081 cgcgctgagc gccacgaaca ccagggtgga gatcaggtcc agcaccaggg gcttggcggc
     1141 gaaaagcagg tttttcatag gtttacctca gggggaaatt cgatgcccca aggctatcgg
     1201 cgggccctgg aaacccccta acccgctcac gaacgcgacg tggcgtttgg cggaaaacac
     1261 cccgccatcc gcgcttcgcc aacagacagt tcttcttttc gcaacgctgc gggcctatat
     1321 tggccgggtc agggcttgct ctgactatgg agataaacgc gcacgtaata agcggactgg
     1381 acccgggtgc gattcccggc ggctccacca ttcttccccc gggtatcgcc ggactgtatg
     1441 gggccgatca gcatcgacag acgtctaaag gtgttttgct ttctctcggc ctgacccacc
     1501 gtcccgggtt ttaaactaac tgcgaacgat aacttcgctg gagaagtccg cctggccgcg
     1561 taagcggttc gacggttctc aatctaagtc ctaggggttc agatccttag gcggggcccg
     1621 ggaggcgcct gccaacagaa gcctcccacc tacctccggg taggcgccct cctctttc
//
LOCUS       DATAJL010000013         1556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51646,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000013 DATAJL010000000
VERSION     DATAJL010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51646"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..828)
                     /locus_tag="VHN39_00175"
     CDS             complement(<1..828)
                     /locus_tag="VHN39_00175"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEX2814778.1"
                     /translation="MRAASVSDYRELARRRLPNIFFEYIDGGSYAEATLARNVADMEA
                     IALRQRVMRDMSQLDMTVTTLGQTMSMPVGLAPVGMAGMYARRGETQAARAAAAAGIP
                     MCLSTVSLCSVEEVAATGVPPWFQLYVLKDRGYMRELLARAKAAGCPVLAFTVDLPVP
                     GSRYRDIRSGFTGSSGFSGALNTAWDGITHPAWLWDVWMHGRPHVLGSVAGAVKDSRS
                     VTDYLSWIARNFDRTVTWKDLDWVRETWDGPIVVKGVLDVADARDAAKAGAQGLVVSN
                     "
     gene            complement(919..>1556)
                     /locus_tag="VHN39_00180"
     CDS             complement(919..>1556)
                     /locus_tag="VHN39_00180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814779.1"
                     /translation="RQQGAVARVPLDVHLDLRHEDGVMQLTDREGVMVGTAAPGDRAL
                     LPIPPEPPSMRAAREAGERYLGLDQRIHPTCFTCGPERHEGDGLRVFPGQIEGAPAGH
                     VACIWTPHIDFADPKGLVPVEVVWAALDCPGFFAWVAREGRHGALLGTMTGEVLRRPL
                     ANHEYIVMAWPLERQGRKETAGVALFAMNGELLARAHQVWIISPPQVQAAA"
BASE COUNT          242 a          551 c          549 g          214 t
ORIGIN      
        1 gttcgacacc accaggccct gggcgccggc tttcgccgcg tccctcgcgt cggccacgtc
       61 cagcacgccc ttgaccacaa tcggcccatc ccaggtctcg cgcacccagt ccagatcctt
      121 ccaggtcacc gtgcggtcga agttccgcgc gatccacgac aggtagtcgg tgacgctgcg
      181 gctgtccttc accgcgcccg ccaccgagcc cagaacgtgc ggccgcccgt gcatccagac
      241 gtcccacagc caggccggat gggtgatccc gtcccaggcg gtgttgagcg cgcccgaaaa
      301 cccgctggag ccggtgaagc ccgagcggat gtcgcggtag cggctgcccg gcaccggcag
      361 atcgacggtg aaggccagga ccgggcagcc ggccgccttg gccctggcca ggagctcgcg
      421 catgtagccg cggtccttca gcacgtagag ctggaaccag ggcggaaccc ccgtggcggc
      481 cacctcctcc accgagcaga ggctgacggt ggagaggcac atggggatac ccgccgccgc
      541 cgccgcgcgg gcggcctggg tctcgccgcg gcgcgcgtac atcccggcca tgcccaccgg
      601 cgccaggccg accggcatcg acatggtctg gcccagcgtc gtgacggtca tgtccagctg
      661 ggacatgtca cgcatcaccc gttggcgcag cgcgatcgcc tccatgtcgg cgacgttgcg
      721 agccagcgtc gcctccgcgt aggagccgcc gtcgatatat tcgaagaaga tattggggag
      781 ccggcggcgt gcgagctccc gatagtccga gactgaagcc gcgcgcaaac gtccctcccc
      841 cgaagtaggc cggcccaatc aggcggggga agttggagcc cgaagcgcag ggctaggcaa
      901 gcaaaagggg cgcaggcctc aggccgcggc ctggacctga ggcgggctga tgatccagac
      961 ttggtgggcg cgggccagga gttcgccgtt catggcgaag agcgccacgc ctgcggtttc
     1021 cttgcggccc tggcgctcca ggggccaggc catgacgata tattcgtggt tggcgagcgg
     1081 gcgacgcagc acctcgccgg tcatggtgcc caggagtgcg ccgtgccgcc cctccctggc
     1141 cacccaggcg aagaagcccg ggcagtccag cgccgcccag acgacctcga cgggcaccag
     1201 gcccttgggg tcggcgaagt cgatatgggg cgtccagata caggccacgt ggccggccgg
     1261 cgcgccctcg atctggccgg gaaagacccg caggccgtcg ccctcatggc gctcgggtcc
     1321 gcaggtgaag caggtgggat ggatgcgctg atcgaggccc agatagcgtt ccccggcctc
     1381 gcgggcggcc ctcatgctgg gcggctccgg cgggatcggc aacagggcgc ggtcgcccgg
     1441 ggcggcggtt ccgaccatga cgccttcgcg atcggtcagt tgcatgacgc cgtcctcgtg
     1501 gcgcaggtcg aggtggacat ccagcggcac ccgggcgacc gcgccctgtt gccgat
//
LOCUS       DATAJL010000014         1782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38876,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000014 DATAJL010000000
VERSION     DATAJL010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38876"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..719
                     /gene="gluP"
                     /locus_tag="VHN39_00185"
     CDS             <1..719
                     /gene="gluP"
                     /locus_tag="VHN39_00185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006272664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucose/galactose MFS transporter"
                     /protein_id="HEX2814780.1"
                     /translation="AAQIHLPYLAMAGVLLLAAIGILASPLPELKTSEANASGEGDGR
                     GLLQFPHLWLGVLCLFVYVGVEVMAGDAIGAYGRGFGLPLDQTKFFTAFTLAAMLLGY
                     VSGLLFTPRLVSQETYLRFSALLGLALVAGAYFTRGYISVGFVAALGFANAMMWPAIF
                     PLAIRGLGRWTETGSAFLVMGIAGGAIIPEAFALLKQHYDFQAVFAGLMAPCYLYILH
                     YAWRGCRQGFPSPAASTTAA"
     gene            complement(875..>1782)
                     /locus_tag="VHN39_00190"
     CDS             complement(875..>1782)
                     /locus_tag="VHN39_00190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814781.1"
                     /translation="AATTPDAIEAQNILMRRLALEGDVIGSRVPPPRNITEIGGYMNM
                     LADLKEGAMREQTLAGILGVAGPTPAQGFISTTTPLSLVAIANDRPAGVSQPSIPTNV
                     WVRSDFVSSVQAAVKGLHAQGATLPLTGPSVLTLPKGGSGATMPANVLFYLGRTLNLA
                     PQAALAVPGTDPLALIRASGTTDPFAAAANVINPATVPVTPANYDALQCTTTTATTVP
                     LAAASFVPLGPVLAAAGFYQPSPPPQPASNLDISWTTFSNITGLVVGDTLLGDELELL
                     HQPSDIAASVFASLLNTVWNGVTFA"
BASE COUNT          230 a          593 c          650 g          309 t
ORIGIN      
        1 tcgccgccca gattcacctg ccgtatctgg cgatggccgg tgtgttgttg ctggccgcga
       61 tcgggatcct cgcctcgccg ctgccggagc tgaagacctc ggaggccaat gcgtcgggag
      121 agggcgacgg gcgcgggctg ctgcagttcc cgcacctgtg gctgggggtc ctgtgcctgt
      181 tcgtctacgt cggcgtcgag gtgatggccg gcgacgccat cggcgcctat ggacgcggct
      241 tcggcctgcc gctggaccag accaagttct tcaccgcctt cacgctggcg gccatgctgc
      301 tgggctatgt gtcgggcctg ctgttcaccc cccggctcgt ctcgcaggaa acctatctgc
      361 ggttctcggc gctgctgggc ctggcgctgg tcgccggcgc ctatttcacc cggggctata
      421 tctccgtcgg gtttgtcgcc gccctgggct tcgccaatgc gatgatgtgg ccggccatct
      481 tccccttggc gatccgcggc ctgggccgct ggacggagac cggatcggcc ttcctggtca
      541 tgggcatcgc cggtggcgcg atcatcccgg aagccttcgc tctgctgaag cagcactacg
      601 atttccaggc ggtgttcgcg ggcctgatgg cgccctgcta cctctatatt ctccactacg
      661 cctggcgcgg ctgccggcaa ggcttcccgt cgccggccgc gtcgacgacc gccgcctgat
      721 cacctatggg cgggaggtgg tgcgccacgg cggggcggcc gagcccgacg gcggcgggat
      781 gcatggcggc ctcgacaagg acttcacggg ccgcctctgc caggccgtcg tgaagcgctg
      841 agcggcgggc tcgcacccgc cgcccctcgg tctgtcaggc gaaggtcacg ccgttccaca
      901 cggtattcag cagggaggcg aacacgctgg cggcgatgtc gctgggctga tgcagcagct
      961 ccagttcgtc gccaagcagg gtgtcgccca ccaccaggcc ggtgatgttg ctgaaggtcg
     1021 tccaggagat gtcgagattg ctcgccggct gcgggggcgg tgacggctgg tagaagcccg
     1081 ccgcggccag gaccggtccc aagggcacga aggacgcggc ggccagcgga accgtcgtgg
     1141 ccgtggtggt cgtgcactgc agggcgtcgt agttggccgg cgtgaccggc acggtcgccg
     1201 gattgatcac attggcggcc gcggcgaagg gatccgtcgt gccactggcc cggatcaggg
     1261 ccagggggtc ggttcccggg accgcgagcg ccgcctgcgg ggcgaggttc agggtgcggc
     1321 cgagatagaa cagcacattg gccggcatgg tcgcgcccga tccgcccttg ggcagggtca
     1381 gcacggacgg tccggtcagc ggcagggtgg cgccctgggc gtgcaagccc ttcaccgccg
     1441 cctgcaccga agagacgaag tcgctgcgga cccagacatt ggtcgggatg ctcggctgcg
     1501 agacccccgc cggccgatcg ttggcgatgg ccaccagcga cagcggcgtg gtggtgctga
     1561 tgaagccctg cgccggcgtc gggccggcga cgccgagaat cccggcgaga gtctgctctc
     1621 gcatggcccc ctccttcagg tcggccagca tgttcatgta gccgccgatc tcggtgatgt
     1681 tccgcggcgg gggcacgcgg ctgccgatca cgtctccttc cagcgccagg cggcgcatca
     1741 ggatgttctg cgcctcgatc gcgtcgggcg tagtggcggc gt
//
LOCUS       DATAJL010000015         2117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25955,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000015 DATAJL010000000
VERSION     DATAJL010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25955"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VHN39_00195"
     CDS             <1..478
                     /locus_tag="VHN39_00195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HEX2814782.1"
                     /translation="VWGSVGRAASVKLGNAGCGDWTVANVDGSLKIRQAGSGDTRAGS
                     AGEAVIGVAGSGDTNLGDVRGGLDVDIAGSGDVTAASIAGAFKVRVAGSGDVRVAGGH
                     ATTMGVVVMGSGDVRFGGVADSLTARIAGSGDVRAKQVTGSVSKTVMGSGGVTIGQ"
     gene            782..1090
                     /gene="rpsJ"
                     /locus_tag="VHN39_00200"
     CDS             782..1090
                     /gene="rpsJ"
                     /locus_tag="VHN39_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEX2814783.1"
                     /translation="MDRQNIRIRLKAFDHRVLDHSTREIVNTAKRTGATVRGPIPLPT
                     RIEKFTVNRSPHIDKKSREQFEIRTHKRVLDIVDPTPQTVDALMKLDLSAGVDVEIKL
                     "
     gene            1103..1963
                     /gene="rplC"
                     /locus_tag="VHN39_00205"
     CDS             1103..1963
                     /gene="rplC"
                     /locus_tag="VHN39_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEX2814784.1"
                     /translation="MRTGVIAKKLGMARFFDEAGTHVPVTVLSLEGCTVVAQRTQDKD
                     GYVALQLGAGAKKPKNTSKAMRGHFAKAEVEPKRTIMEFRVSEDMLIDVGAELTADHY
                     LPGQKIDVTGVTVGKGFQGAMKRWNFGGMRATHGVSVSHRAHGSTGQRQDPGKTFKGK
                     HMAGHLGQETVTTLNLTVWRVDVERGLILVKGAVPGTEGDYVKIRDAVKKAAPAGIPT
                     PGAFRKAGEEPKAPAAEEETPVVEAAAEAPVAEEPVVEAAAPEAEAAAPEATETEAPA
                     ADAPEAGEEA"
     gene            1963..>2117
                     /locus_tag="VHN39_00210"
     CDS             1963..>2117
                     /locus_tag="VHN39_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019369674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEX2814785.1"
                     /translation="MKLDVIKLDGGKSGSIELSDDIFGIADIRGDILQRMVTWQLAKR
                     RGYRRCR"
BASE COUNT          385 a          708 c          713 g          311 t
ORIGIN      
        1 ggtctggggc tcggtgggtc gcgcggccag cgtcaagctc ggcaacgccg gctgcggcga
       61 ctggacggtg gccaatgtcg acgggagcct gaagatccgg caagccggct ccggcgacac
      121 gcgcgccggg tcggctgggg aggctgtgat cggtgtggcc ggttccggcg acaccaacct
      181 gggcgacgtc cgcggcgggc tcgacgtcga catcgccggc tccggcgatg tgacggccgc
      241 ctccatcgcc ggcgcgttca aggtccgcgt cgcgggctcc ggcgacgtga gggtggcagg
      301 cggccacgcc acgaccatgg gcgtcgtggt gatgggttcc ggcgacgtca ggttcggcgg
      361 cgtggccgac agcctgaccg cccgcatcgc cggctccggc gacgttcggg ccaagcaggt
      421 gaccggctcg gtctccaaga cagtgatggg ctccggcggc gtcaccatcg gccagtgaca
      481 acgggctaac ggcgggcggc caaaaccgcc cgtctcgccc ttgacgcgag cgagtcactc
      541 cagtagtaac gcgcctcctg ttggaccggc tgtagctctc gggctagacg cggttcgcag
      601 aacgagctga ggcagtgcct tcatcggcgc tttggcacag gccctcgcgg gtagcgcgtg
      661 ggcctaagtc gtttttgcgg acttacgcgt acgggctctc actttgaggg ttcgggttgg
      721 tctttgaaat ggtcgagatc acgcggacgg ttcgtcgtct gtagggaacg aaaagagcga
      781 tatggatcgt cagaacatcc gcatccgcct caaggcgttt gaccaccgcg tgctggacca
      841 ttccacgcgc gagatcgtca acaccgcgaa gcgcacaggc gcgaccgtgc gcgggcctat
      901 cccgctgccg acgcgcatcg agaaattcac cgtcaaccgc tcgccgcaca tcgacaagaa
      961 gtcgcgcgag cagttcgaaa tccgcacgca caagcgcgtg ctcgacatcg tcgatcccac
     1021 cccgcagacc gtggacgcgc tgatgaagct cgacctgtcc gccggcgtgg acgtcgagat
     1081 caagctctaa ggggtcagcc agatgcgtac cggcgtgatc gccaaaaagc tgggcatggc
     1141 tcgcttcttc gacgaagcgg gaacccatgt gccggtgacc gtcctcagcc tcgaaggctg
     1201 tacggtcgtc gctcagcgca cccaggacaa ggacggctac gtcgccctcc agctgggcgc
     1261 gggcgccaag aagcccaaga acacctccaa ggccatgcgc ggccacttcg cgaaagctga
     1321 agtcgagccc aagcgcacga tcatggagtt ccgggtgtcc gaggacatgc tgatcgacgt
     1381 gggcgccgag ctcaccgccg accactacct cccgggccag aagatcgacg tcaccggcgt
     1441 tacggtcggc aagggcttcc agggcgccat gaagcgctgg aacttcggcg gcatgcgggc
     1501 cacccacggg gtcagcgtct cccaccgggc ccacggctcc accggccagc gccaggatcc
     1561 gggcaagacc ttcaagggca agcacatggc tggccacctc ggccaggaaa ccgtcaccac
     1621 cctcaacctc accgtctggc gcgtcgatgt cgaacgcggc ctgatcctgg tgaagggcgc
     1681 cgttcccggc accgagggcg actacgtcaa gatccgcgac gcggtgaaga aggccgcgcc
     1741 cgcgggcatc ccgacgcccg gcgccttccg caaggccggt gaagagccca aggctcccgc
     1801 cgccgaggaa gagaccccgg tcgtcgaagc cgccgccgaa gcgcctgtcg ctgaggagcc
     1861 cgttgtcgaa gcggccgctc ccgaagctga agccgctgct ccggaggcca ccgaaactga
     1921 agcgcctgcc gctgatgcgc cggaagctgg ggaagaagcc tgatgaaact cgacgtcatc
     1981 aaactggacg gcgggaagag cggctcgatc gagctttccg acgacatctt cggcatcgcc
     2041 gatatccgcg gcgatatcct gcagcgcatg gtgacctggc aactggccaa gcgccgcgga
     2101 tatcggcgat gccgaag
//
LOCUS       DATAJL010000016         1590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_220,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000016 DATAJL010000000
VERSION     DATAJL010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_220"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..185
                     /locus_tag="VHN39_00215"
     CDS             <1..185
                     /locus_tag="VHN39_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2814786.1"
                     /translation="AARGTSVEAVRAEVAAANPTGRVGRPEEFGAMCAFLASAHAGYL
                     TGQNVLMDGGLYPGLF"
     gene            303..671
                     /locus_tag="VHN39_00220"
     CDS             303..671
                     /locus_tag="VHN39_00220"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX2814787.1"
                     /translation="MDPEWNDSQPIYRQIRDRVVAMILDGLLKEGDPLPSVRNVAADS
                     RVNPLTVLKAYQQLDGDGLVEKRRGLGMFVNKGARDLLLQGERQRFLTEQWPEVQATI
                     LRLGLAEQLLGSGRAAPKGG"
     gene            676..1539
                     /locus_tag="VHN39_00225"
     CDS             676..1539
                     /locus_tag="VHN39_00225"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2814788.1"
                     /translation="MACIEARGLKKAYGKSVALDGVDLKVEEGRILGLIGPNGAGKST
                     ALGAILGLTEYQGDLKVLGRNPWTERDQLMADVCFIADVAVLPRWMRVADAVDYVAGV
                     HPRFDRAKAEGFLAKTTIKRTSRVRELSKGMVAQLHLALVMAIDAKLLVLDEPTLGLD
                     ILFRKSFYDSLLNDYFDRNRTIVVSTHQVEEIQHILTDVAFIDRGKIVLDCSMEDFEA
                     RYAEVMVGPENRDAALALKPIQERQLFGRSIFLFDHADRAQLATLGEVRSPSLGDLFV
                     AMMGETQGTAA"
BASE COUNT          270 a          550 c          528 g          242 t
ORIGIN      
        1 cggcagcgcg gggaacttcg gtcgaggccg tgcgggccga ggtcgcggcg gccaatccca
       61 ccggccgggt cgggcggccg gaggagttcg gcgccatgtg cgccttcctg gccagcgccc
      121 acgcgggcta tctgactggc cagaacgtgc tcatggacgg ggggctctac ccggggctgt
      181 tctgatcgtc gccaaaaaac ctcttgcatc ggatctggtg ttgtagttag gtacaacacc
      241 ggtccagcaa cacgctggct gccggcaagg cgggtcgccg tgaccctgcc catgggcgga
      301 cgatggatcc tgagtggaat gacagccagc cgatctaccg ccagatccgg gatcgggtcg
      361 tggcgatgat cctcgacggc ctgctcaaag agggcgatcc gctgccgtcg gtgcgcaatg
      421 tcgccgccga cagccgggtc aatccgctga ccgttttgaa ggcctatcag cagctcgacg
      481 gcgacggcct ggtcgagaag cggcggggcc tcggcatgtt cgtcaacaag ggcgcccgcg
      541 acctgctgct gcagggcgag cgccagcggt tcctcaccga acagtggccc gaggtccaag
      601 cgaccatcct gcggctgggt ctggccgaac agctgctcgg ctccggccgc gccgcgccga
      661 aggggggctg agcccatggc ctgcatcgaa gcccgcggcc tgaagaaggc ctatggcaag
      721 tccgtcgccc tggacggcgt cgacctcaag gtcgaagagg ggcgcatcct cggcctcatc
      781 ggccccaacg gcgcgggcaa gagcacggcg ctcggcgcca tcctcggcct caccgaatat
      841 cagggcgacc ttaaggtcct cggacgcaat ccctggaccg agcgcgacca gctgatggcc
      901 gacgtctgct tcatcgccga cgtggcggtg ctgccgcgct ggatgcgggt cgccgacgcg
      961 gtcgactatg tggccggcgt gcatccgcgg ttcgaccgcg ccaaggccga ggggttcctg
     1021 gccaagacca ccatcaagcg caccagccgc gtgcgcgagc tatcgaaagg catggtcgcc
     1081 cagctgcacc tggccctggt catggccatc gacgccaagc tgctggtgct ggacgagccg
     1141 acgctcggcc tcgacatcct cttccgcaaa tcgttctacg acagcctgct caacgactac
     1201 ttcgaccgca accgcaccat cgtggtctcc acccaccaag tggaggagat ccagcacatc
     1261 ctgaccgacg tggccttcat cgaccgaggc aagatcgtgc tcgactgcag catggaggac
     1321 ttcgaggccc gctacgccga ggtgatggtg ggcccggaga accgcgacgc ggcgctggcg
     1381 ctcaagccca tccaggagcg ccagctgttc ggacgcagca tctttctgtt cgatcacgcc
     1441 gaccgggccc agctcgcgac cctgggcgag gtgcgctcac ccagcctggg cgacctgttc
     1501 gtggccatga tgggcgaaac ccaagggacg gcggcatgag cgaccagacc tccatccccg
     1561 cggctgaggc ccagccctcc ccgcctaccc
//
LOCUS       DATAJL010000017         8117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25976,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000017 DATAJL010000000
VERSION     DATAJL010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8117
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25976"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..725
                     /locus_tag="VHN39_00230"
     CDS             <1..725
                     /locus_tag="VHN39_00230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2814789.1"
                     /translation="LDFKNKAVLIVGGSSGIGNGIAQAFLERGAAVHVWGTRARAEEY
                     DGVEGSNLNGLAYGQVDVGDRAQVAAAAGPPALDVLILCQGTVVYRRGEFEPEGWDRV
                     MAVNLDSLMACAMKFHDKLAARKGVIIIVSSVSGYTSNRGNPAYAASKAGAVSLTKTL
                     GEAWARDGIRVVGLAPGLVDTKLTKVTTENPQRMEGALRSIPLGRMGTPQDMAGVALF
                     LASPLAAYVVGQTLIVDGGLSL"
     gene            722..1489
                     /locus_tag="VHN39_00235"
     CDS             722..1489
                     /locus_tag="VHN39_00235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2814790.1"
                     /translation="MSTSRSVEGSTVLITGAASGMGRATAEVFAAEGAHVALTDIAAE
                     SVREVADDLVHRGLSAEAWTLDVGDAAAIQTVVAQVAERFGGLDIVVNNAGVGGFAAI
                     DADNYEAVWTRALGVMLTSHQRIIRAALPHLRKSAAPRIVNIASTEALGATARDSAYA
                     AAKAGVTGLTRALAVELGREGITVNCICPGPILTGMTEAIPEADRQTFAKRRTALGRY
                     GRPEEVAHITLSLCLPASSYITGVTIPVDGGLMARNA"
     gene            1504..1923
                     /locus_tag="VHN39_00240"
     CDS             1504..1923
                     /locus_tag="VHN39_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HEX2814791.1"
                     /translation="MPGTILGPVVALVLWSLVMWAWLYATRIPAVNRLKVPLDPNASK
                     SEFDAALPPQVRWKADNYNHLMEQPTIFYATALSLAFLGQGTGLNAWLAWAYVALRVI
                     HSLVQSTSNVIMVRFSIFMLGSVVLVILAIRAAMAVF"
     gene            1940..2413
                     /locus_tag="VHN39_00245"
     CDS             1940..2413
                     /locus_tag="VHN39_00245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814792.1"
                     /translation="MASPLLIALLVLQAFHVAFLAFHDWIPLGRLNDVRAVRAANPGA
                     SLLVTTVLSTVPYAAGLMMSLAYRHQAFPGWVTVWLWVSYGPLFGGELRAWWIPYLIR
                     PEPERAARYQAMFGRTVAFLPPRNGISPNALHVVLHAATVSVLILLGLTALSAPA"
     gene            complement(2410..3030)
                     /locus_tag="VHN39_00250"
     CDS             complement(2410..3030)
                     /locus_tag="VHN39_00250"
                     /inference="COORDINATES: protein motif:HMM:NF024206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEX2814793.1"
                     /translation="MTGLRTLMDAIAAGETARCLKLLAADPGLVWATEGKGATREEAA
                     ANFLTAIRHYIYDGDTALHIAAAAYRVEVAERLIGLGADLRARNRRGAEPLHYAADGG
                     PGAPHWNPAAQAATITLLIAAGADPNALDKSGVAPLHRAVRTRCAAAVAALLAGGADA
                     SLGNASGSTPMMLATTQTGRGGSGAPEAKAQQVEIVALLSRQGAAV"
     gene            complement(3036..3845)
                     /locus_tag="VHN39_00255"
     CDS             complement(3036..3845)
                     /locus_tag="VHN39_00255"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX2814794.1"
                     /translation="MDKLFDGGWTHIAVTRREAVVELALARPEARNALNGLLMEELTE
                     AARLLRLRTDVLAVILTGTESYFSAGADLSASQERAAQPTLLEARRTVMAGPDLCKAW
                     EEIEAVTIAAIEGYCIGGASALAVSCDFRVMGATAYMRLPEVPLGMNMSWRTLPKLVA
                     LAGPSRAKQYVMFGEAADAARCLDWGFADDVVPAGEALIAARRWAAKVVALPPLPVRM
                     TKEAINAISGAGAHASIYMDRDQYLLAGRTDDLREGIAAFREKRPGKFKGD"
     gene            3928..4950
                     /locus_tag="VHN39_00260"
     CDS             3928..4950
                     /locus_tag="VHN39_00260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814795.1"
                     /translation="MRTTARLAFAAAMAVALSANAAGYHAPKNGFGQPDLGGDWTNAS
                     LTSLQRPAMFKSLTLTDAEAAALEKRRAAARAQQDKPSDPKAGAPPVANDPGGYNASW
                     TDPGVSLGRINGQVRTSWIVDPVDGRLPYSTTGRQAYVEALRKARNSWDGPENRPLGE
                     RCILGFGSTAGPPMLNVLYNNNYQIVQSKDAVAILVEMNHDARIIRLTDKKHLPSHMR
                     PWMGDSVGWWEGDSLVVETTNFNPGESLRPYFDNSILLSPTAKVTERFTRVSPTQILY
                     QFSVDDPATYAQVWHAEMPLNATKGPVYEYACHEGNYALPGILAGARQAEREGKKIEA
                     VDVSGG"
     gene            4972..5979
                     /locus_tag="VHN39_00265"
     CDS             4972..5979
                     /locus_tag="VHN39_00265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814796.1"
                     /translation="MIRLALLAVAAASVLTCPAAAAPYHPPRTRDGVPDLQGVWNNAS
                     FTRLQRPPAFKALEPSDAEAKAFEGRLDNSHAEMNQAVSPDAPAPTPGQGVGESEWRE
                     FGFGLARINGRPRTSWIVDPADGQIPFTPAARTASDAANTNDAVNLDNPENRNTADRC
                     LLGAGSPAGPPLLNHSYNANYQIVQTRDAVAIVVEMNHDARIVRLNAKGHFPSAVRPW
                     MGDSIGWWDGDTLVVETTNFNPGERWRWNSGGSLVLSPDARVTERFTRVGPRRLLYAF
                     AVDDPANYSRAWRGEMPLLASTEPMFEYACHEGNVSMIGELAGARRFEHDGLKAAPAP
                     R"
     gene            complement(5989..7806)
                     /locus_tag="VHN39_00270"
     CDS             complement(5989..7806)
                     /locus_tag="VHN39_00270"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2814797.1"
                     /translation="MTDTLDAEAKTDDLGFDPEALRARYRAERDKRLRDDGNAQYREI
                     AGDFAHYLDDPYVAPGFHREPLTDEVEVVVVGGGFGGQLAAARLREAGMSDIRIIEKG
                     GDFGGTWYWNRYPGAACDIESYIYLPLLEELGYVPVEKYSRAPEILAHSRAIGEHFDL
                     YKGALFQTEVTKMAWDEAAARWIVTTNRGDTLKARFVVMANGPLHRPKLPGISGLESF
                     KGHSFHTSRWDYGYTGGTNEGGLTGLAGKRVGVIGTGATAVQCVPHLGAGAGELFVFQ
                     RTPSSIDVRANRPTDPRWAAGLEAGWQQRRMDNFNILLSGGFQEEDLVNDGWTDIIGN
                     ILLLARKKIAAGEVVEDPAALMQMADFKKMEQVRARVDSVVQDPDTAEALKPYYNQFC
                     KRPCFHDDYLAAFNRPNVHLIDTQGAGVERITEKGIVANGIEYELDCIVYATGFEVGT
                     SYSRRAGYELHGRDGQTLTEKWQDGVSTLHGLYSRGFPNCFIISNAQSGFTANFPHMI
                     NEQSKHIAYVLKHCADHQVRVAEASEEAENAWVQTIIDLSIMRQKFLEECTPGYYNNE
                     GNVQAMSARNGSYGAGPVAFAKVLEDWRAEGSLKGLELS"
BASE COUNT         1243 a         2933 c         2649 g         1292 t
ORIGIN      
        1 atctcgattt caagaacaag gcggtcctga tcgtcggcgg ctccagcggc atcggcaacg
       61 gcatagccca agccttcctt gagcgcggcg cggcggttca cgtctggggc acgcgtgccc
      121 gggccgaaga gtacgacggc gtcgagggct ccaatctgaa tggcctcgcc tacggccagg
      181 tcgatgttgg cgaccgcgcc caggtagccg ctgcggccgg cccgccagcg ctggacgtgt
      241 tgatcctctg ccaagggacg gtcgtttatc ggcgcggcga gttcgaaccc gaaggctggg
      301 accgggtgat ggcggtcaac ctcgacagcc tgatggcctg cgccatgaag ttccatgaca
      361 agctggccgc ccgcaaaggc gtgatcatca tcgtcagctc ggtttccggc tacacgtcga
      421 accgcggcaa cccggcttat gcggcgtcca aggccggcgc tgtcagcctg accaagacgc
      481 tcggcgaggc ctgggcgcgc gacggcatcc gggtggtcgg cctggcgccg ggcctcgtgg
      541 acaccaagct caccaaggtc accaccgaga acccgcagcg gatggagggc gccctgcgtt
      601 ccatcccgct cggccgcatg ggcactccgc aagacatggc cggcgtcgcc ctcttcctcg
      661 cctcgccgct ggcggcctat gtggtcggcc agaccctgat cgtcgatgga ggcctgagcc
      721 tttgagcacg tcccgatccg tcgaaggctc caccgtcctg atcactgggg cggccagcgg
      781 catgggtcgc gccaccgccg aggttttcgc cgccgagggc gcccatgtgg cgctcaccga
      841 catcgccgcg gagtccgtgc gtgaggtcgc cgacgacctg gtccaccgcg gcctcagcgc
      901 cgaggcctgg accctggacg tgggcgatgc ggcggccatc cagaccgtgg tcgcccaggt
      961 cgccgagcgg ttcggcggcc tcgacatcgt ggtcaacaac gccggcgtcg gcggcttcgc
     1021 ggctatcgac gccgacaact acgaggcggt ctggactcgt gcgctcggcg tcatgctgac
     1081 ctcgcatcag cggatcatcc gcgccgccct gccccacctg cgcaagtccg ccgctccgcg
     1141 gatcgtcaac atcgcctcaa ccgaggccct gggcgccacc gctcgcgaca gcgcctatgc
     1201 cgccgccaag gcgggtgtca cgggcctcac ccgggcgctc gccgtggagc tcggccgcga
     1261 gggaatcacc gtcaactgca tctgccccgg cccgatcctc accggcatga ccgaggccat
     1321 ccccgaggcc gaccgccaga ccttcgccaa gcgccgcaca gcgctcggcc gctacggccg
     1381 tccggaagag gtggcccaca tcacgcttag cctctgcctg ccggcgtcgt cctacatcac
     1441 cggcgtcacc atcccggtgg acggcgggct gatggcccgc aacgcctgac cctggagaca
     1501 tccatgcccg gaaccatcct cggacccgtc gtcgccctcg tgctctggtc gctggtcatg
     1561 tgggcgtggc tctacgccac ccgcatcccg gccgtgaacc ggctgaaggt cccgctcgac
     1621 ccgaacgcct cgaagtcgga gttcgacgcc gccctgccgc cgcaggtccg ctggaaggcc
     1681 gacaactaca accacctgat ggagcagccg accatcttct acgccaccgc gctcagcctc
     1741 gccttcctgg ggcaagggac gggcctcaac gcctggctgg cctgggccta tgtggcgctc
     1801 cgcgtgatcc acagtctcgt gcagtccacc agcaatgtga tcatggtccg gttctcgatc
     1861 ttcatgctgg gctcggtggt gctggtgatc ctggcgatcc gcgccgcgat ggcggtgttc
     1921 tgaggcagcc gcccgcacca tggcgagccc actgctcatc gcgctcctgg tcctgcaggc
     1981 cttccacgtc gccttcctgg cgttccacga ctggatcccg ctgggcagac tgaacgatgt
     2041 ccgcgccgtg cgggccgcca acccaggcgc ctcgctgctc gtcaccacgg ttctcagcac
     2101 ggttccttac gccgccggcc tgatgatgag cctagcctat aggcatcaag ccttccccgg
     2161 ctgggtcacc gtctggctct gggtgagcta cggcccgctg tttggcggtg agctgcgcgc
     2221 ctggtggatt ccgtacctca tccgcccgga gccggagcgg gcggcgcgct accaggcgat
     2281 gttcggtcgg accgtcgcct tcttgccgcc gcgcaacggg atctcgccca acgccctgca
     2341 tgtggtgctg cacgccgcga ccgtgagcgt cctgatcctg ctgggcctga ccgcgctgtc
     2401 cgcgccggcc tagacagccg ccccctggcg ggacagcagc gccacgatct cgacctgctg
     2461 cgccttggcc tcgggcgcgc cgctgccgcc ccggccggtc tgggtggtgg ccagcatcat
     2521 cggggtcgag ccgctggcgt tcccgagcga tgcgtccgcc ccgcctgcca gcagggccgc
     2581 caccgccgcc gcacagcggg tgcgaaccgc gcggtgcagt ggggcgacgc cgctcttgtc
     2641 gagggcgttg ggatcggcgc cggccgcgat cagcagagtg atggttgcgg cctgagcggc
     2701 ggggttccaa tgcggggcgc caggcccgcc gtcggcggcg tagtgcagcg gctcagcgcc
     2761 ccgccggttc cgggcccgca ggtcggcgcc cagtccgatc agccgctcgg cgacctccac
     2821 ccgatacgcg gcggctgcga tgtgcagcgc cgtgtcgccg tcatagatgt agtgcctgat
     2881 cgcggtcagg aagttcgctg cagcttcctc gcgtgtggcg cccttaccct cagtcgccca
     2941 caccagccca gggtcggcgg ccagcagctt taagcagcgg gcggtctcac ccgccgcgat
     3001 cgcatccatc agggtccgaa gcccggtcat tcctcctagt cccccttgaa cttgcccggc
     3061 cgcttctcgc ggaaggcggc gatgccttcg cgcaggtcgt cagtgcggcc ggccagcagg
     3121 tactgatcgc ggtccatata gatgctggcg tgggcgcctg cccccgagat ggcgttgatc
     3181 gcctccttgg tcatgcgcac cggcaggggc ggcagagcga cgaccttggc ggcccagcgg
     3241 cgggcggcga tgagcgcctc tccggcaggt accacgtcgt cggcgaagcc ccagtcgaga
     3301 cagcgcgccg cgtcggcggc ctcgccgaac atgacgtact gcttggcccg tgacgggccg
     3361 gcgagggcca ccagcttagg cagcgtgcgc cagctcatgt tcatccccag cggcacctct
     3421 ggcaggcgca tgtaggccgt ggcgcccatc acccgaaaat cgcaggagac ggccaacgct
     3481 gaggcgccgc cgatacaata gccctcgatg gccgcgatgg tcaccgcctc gatctcctcc
     3541 caggccttgc agaggtcggg gccggccatc accgtgcggc gagcctccag cagcgtcggc
     3601 tgggccgccc gttcctggct ggcggagagg tcggccccgg ccgagaaata gctttccgtc
     3661 cccgtcagga tcaccgccag gacgtcggtc cgcagccgaa gcagccgcgc ggcctcggtc
     3721 agctcctcca tcagaaggcc gttcagcgcg tttcgggcct ccgggcgcgc cagggccagc
     3781 tcgaccaccg cctcgcggcg ggtcaccgcg atgtgcgtcc agccgccgtc gaagagcttg
     3841 tccatccgcg gtccctgtcc caggcgttgc gcccacgata cacgaggcgg cttgcaagcc
     3901 gagccgggcg ggcaaacaat cgtggccatg agaaccacag cgcgcctcgc cttcgccgcc
     3961 gcaatggccg tcgccctttc ggccaacgcc gccggctacc atgccccgaa gaacggtttc
     4021 ggccagccgg acctgggtgg ggactggacc aacgcctcgc tgaccagcct gcagcggccg
     4081 gcgatgttca agtcgctgac cctcaccgac gccgaggccg ccgcgctgga gaagcgccgc
     4141 gccgccgccc gcgcgcagca ggacaagcct tcagatccca aagccggcgc gccgccggtc
     4201 gccaacgatc cgggcggcta caacgcctcc tggaccgacc ccggcgtctc gctgggccgc
     4261 atcaacggcc aggtgcgcac ctcttggatc gtcgatccgg tggatgggcg gctgccctac
     4321 agcaccacgg gacggcaggc ctacgtcgag gcgctacgca aggcgcgcaa cagctgggat
     4381 gggccggaaa accgcccgct cggcgaacgc tgcattctgg gtttcggctc caccgccggc
     4441 ccgccgatgc tcaacgtgct ctacaacaac aactatcaga tcgtgcaatc caaggacgcc
     4501 gtcgcgatcc tggtggagat gaaccacgac gcgcgcatca tccggctcac cgacaagaag
     4561 cacctgccgt cccacatgcg tccctggatg ggcgacagcg tcggctggtg ggagggcgac
     4621 agcctggtgg tcgagaccac caacttcaat ccgggcgaga gtctcaggcc ctatttcgac
     4681 aactcgatcc tcttgtcgcc caccgccaag gtgaccgagc gcttcacccg cgtctcgccg
     4741 acccagatcc tctaccaatt ctccgtcgac gacccggcga cctatgccca ggtctggcac
     4801 gcggaaatgc cgctcaacgc caccaagggg ccggtctacg aatacgcctg ccacgagggc
     4861 aactacgccc tgccgggcat cctcgccggc gcccgccagg ccgagcgcga gggcaagaag
     4921 atcgaggctg tggacgtctc aggcggctag gcaagggttg agggccttcc gatgatccgt
     4981 ctggcgctcc tggccgtagc tgcggcgtcg gtcctgactt gcccggccgc ggctgcgccc
     5041 tatcatccgc cccgcacccg cgacggcgtc cccgacctgc agggcgtctg gaacaacgcc
     5101 tccttcaccc gcctgcaacg tccgccggcc ttcaaggcgc tggagccgag cgatgcggag
     5161 gccaaagcct tcgagggccg tctcgacaac agccacgccg agatgaacca ggccgtgtcg
     5221 cccgacgcgc cggctccaac gcccggccag ggcgtcggcg aaagcgagtg gcgcgagttc
     5281 ggctttggcc tggcgcggat caacgggcgt ccgcgcacct cctggatcgt cgatcccgca
     5341 gacgggcaga tccccttcac gcccgcggcc cgcaccgcca gcgacgccgc aaacacgaac
     5401 gacgcggtca acctcgacaa tccggaaaac cgcaacaccg ccgaccgctg cctgctgggc
     5461 gccggctcgc ccgccggccc gccgctgctc aaccatagct acaacgccaa ctaccagatc
     5521 gtgcagaccc gagacgccgt cgccatcgtc gtcgagatga accacgacgc acgcatcgtg
     5581 cgcctgaacg ccaaaggcca tttcccctcg gccgtccggc cctggatggg agattccatc
     5641 ggctggtggg acggcgacac cctggtggtg gagaccacca acttcaatcc gggcgagcgc
     5701 tggcggtgga acagcggcgg ctcgctcgtc ctgtcgccgg acgccagggt caccgagcgg
     5761 ttcacccggg tggggccgag acgtttgctc tacgccttcg cagtcgacga tccggccaac
     5821 tacagccgcg cctggcgcgg tgagatgccg ctcctggcct cgaccgagcc gatgttcgaa
     5881 tacgcctgcc acgagggcaa cgtctcgatg atcggcgaac tggccggcgc gcgccgtttc
     5941 gagcatgacg gcctgaaggc cgccccggcg ccccgataac cggcgggact agctcagctc
     6001 caggcccttc aggctcccct cggcccgcca gtcctccagc accttggcga aggcgacggg
     6061 ccccgcgccg taggagccgt tgcgcgcgct catcgcctgc acattgccct cgttgttgta
     6121 gtagccgggc gtgcactcct cgaggaactt ctggcgcatg atggagaggt cgatgatcgt
     6181 ctgcacccag gcgttttcgg cctcctccga ggcctccgcc acccgcacct gatggtcggc
     6241 gcagtgcttc agcacatagg cgatgtgctt ggactgctcg ttgatcatgt gcgggaagtt
     6301 ggccgtgaag cccgactggg cgttggagat gatgaagcag ttgggaaagc cgcggctgta
     6361 gaggccgtgc agcgtcgaga ctccgtcctg ccacttctcc gtcagggtct ggccgtcgcg
     6421 gccatgcagc tcgtacccgg cgcggcggct gtatgaggtg ccgacctcga agcccgtcgc
     6481 atagacgatg cagtcgagct cgtactcgat cccgttggcc acgatcccct tttcggtgat
     6541 ccgctcgacg ccggcccctt gggtgtcgat caggtgcacg ttcggccggt tgaacgccgc
     6601 caggtagtcg tcgtggaagc agggccgctt gcagaactgg ttgtaatagg gcttcagcgc
     6661 ctcggcggtg tcagggtcct ggaccacgct gtccacccgg gcccgcacct gctccatctt
     6721 cttgaagtcc gccatctgca tcagggcggc ggggtcctcg accacctcgc cggcggcgat
     6781 cttcttgcgg gcgagcagca ggatgttgcc gatgatgtcg gtccagccgt cgttgaccag
     6841 atcctcctcc tgaaaaccgc cggagagcag gatgttgaag ttgtccatcc gccgctgctg
     6901 ccagccggcc tccaggcccg cggcccaccg cggatcggtc ggccgattgg cccgcacatc
     6961 gatggacgac ggggtgcgct ggaagacgaa gagctcgccc gcgccggcgc ccagatgcgg
     7021 cacgcattgg acggcggtgg cgccggtgcc gatcacgccg acccgcttgc cggccaggcc
     7081 cgtcagcccg ccctcgttgg tcccgccggt gtagccgtag tcccagcggc tggtgtggaa
     7141 ggaatggccc ttgaagctct ccagtccgga aatgcccggc agcttggggc ggtgaagagg
     7201 cccattggcc atgaccacga agcgggcttt cagcgtgtcg ccccggttgg tggtgacgat
     7261 ccagcgcgcg gcggcctcgt cccaggccat cttggtgacc tcggtctgga agagcgcgcc
     7321 cttgtagagg tcgaaatgct cgccgatcgc gcgactgtgg gccaggatct cgggggcgcg
     7381 gctgtatttc tccaccggca cgtagccgag ctcttccagg agcggcaggt agatatagct
     7441 ctcgatatcg caggccgccc ccggatagcg gttccagtac caggtgccgc cgaagtcgcc
     7501 gcccttctcg atgatccgga tgtcgctcat cccggcctcg cgcaggcggg ctgcggccag
     7561 ttgacccccg aacccgccgc caaccaccac cacctcgacc tcgtcggtca ggggttcgcg
     7621 gtgaaagccc ggcgccacat aggggtcgtc caggtagtgg gcaaaatcgc cggcgatctc
     7681 gcggtattgg gcgtttccgt cgtcccgcag gcgcttgtcg cgctcagcgc ggtacctggc
     7741 gcgcagggcc tccggatcga acccgaggtc gtcggtcttg gcctcggcgt cgagcgtgtc
     7801 ggtcatggcg tcgctttccc ctgcccggct tgcccgggac ctgacccata aaactagagg
     7861 tgacgccacg acaatcaagg tggctcaagc gcgcgccata ccgaatctac gaaaacggcg
     7921 cgtgacgaga gtgacgaaaa gcggagcctt gggaggaaga ctttaacctg atccggcgat
     7981 ggtgctccca tggccgtgct gcacgcctcc aagaacgccg tgaccgaggg gtcatccggc
     8041 ctgggtttcg cgaccctgcc gatgcccctc gccgtgctgg acggcgagct cgccatactg
     8101 gaggccaaca ccgcctt
//
LOCUS       DATAJL010000018         1691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38920,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000018 DATAJL010000000
VERSION     DATAJL010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38920"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..732
                     /locus_tag="VHN39_00275"
     CDS             235..732
                     /locus_tag="VHN39_00275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0033745 - L-methionine-(R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX2814798.1"
                     /translation="MAEAFNDKVLPAAKAERYASVAQEIASVLDGEPNVVARMATVAS
                     MLAASFEHFYWTGFYVVDPDKREELVVGPYQGTLGCLRIAFGQGVCGAAARSRQTQVV
                     EDVNAFPGHIACDSRSVSEIVVPVVDAQGHLIAVFDVDATTPAAFDGVDVEWLERILQ
                     DSFAD"
     gene            complement(729..1292)
                     /locus_tag="VHN39_00280"
     CDS             complement(729..1292)
                     /locus_tag="VHN39_00280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814799.1"
                     /translation="MKLNLGCGFDKREGWLNVDGFAACEPDKLLDIEVTPWDLETDAF
                     EEVLMKHVLEHVGAEFSVFAAVMRELYRVTAPGGVVEIHVPHFRHDTFWSDPTHVRGF
                     TPVTFQMMSKRQNRRWMESHANYTMLAFLVDVDFEIETVVQTYDPRWQAKFDAGEISR
                     EELREAALERWNVARELQVRLRAVKDG"
     gene            1433..>1691
                     /locus_tag="VHN39_00285"
     CDS             1433..>1691
                     /locus_tag="VHN39_00285"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516193.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEX2814800.1"
                     /translation="MAEAYIVAATRTAGGRKGGRLREWHPADLGAVVLNELLDRTGID
                     PAVVEDVVMGCVMQVGEQATNIGRGAVLASRLPESVPATSVD"
BASE COUNT          286 a          546 c          567 g          292 t
ORIGIN      
        1 ggccgcacct gcggatctcc ggcggcgcgc agcgagaaga tgtcgcgggg ctggaaggcg
       61 cggttcggcc cctcgggcgc ttgggcctgg gcgaacgacg acgacgcgca ggcgatcgcg
      121 agcgcggaaa cgagcaaggc aagacgcatg gaggctcccg gaaacttgga cgggcctaca
      181 aaggccacgc tggccgggtt tgtccagatc gtccgggacc gctacatccc gtccatggcc
      241 gaagcgttca acgacaaagt cctccctgcg gccaaggccg agcgctatgc gagcgtggcg
      301 caggagatcg cttcggttct cgacggcgaa cccaacgtgg tcgcccgcat ggcgacggtg
      361 gcctcgatgc tggccgcgag cttcgagcat ttctactgga ccggcttcta tgtggtcgat
      421 ccggacaagc gcgaggagtt ggtggtgggc ccctatcagg ggacgctcgg ctgcctcagg
      481 atcgcctttg gccagggcgt ctgtggcgcc gcggcgcgca gccgccagac ccaggtggtc
      541 gaggacgtca acgccttccc cggccacatc gcctgcgaca gccgctcagt aagcgagatc
      601 gtggtgccgg tggtggacgc ccaggggcat ttgatcgccg tgttcgacgt ggacgccaca
      661 acgccggccg ccttcgacgg cgtggatgtc gagtggctcg agcggatcct gcaggacagt
      721 ttcgcggatt agccgtcctt caccgcgcgg agccggacct gcagttctcg ggcgacgttc
      781 caacgttcca gggcggcttc ccgaagctct tcgcgcgaga tctcgccggc gtcgaatttg
      841 gcctgccagc gcgggtcgta ggtttggacg accgtctcga tctcgaaatc gacgtccacg
      901 aggaaggcaa gcatcgtgta gttggcatgg ctctccatcc atctgcgatt ctgccgcttg
      961 gacatcatct gaaaggtcac aggcgtgaag ccccgaacat gggtcgggtc ggaccagaag
     1021 gtgtcgtggc gaaagtgcgg gacgtgaatt tccacaacgc cgccaggcgc ggtcacgcgg
     1081 tagagctcgc gcatcaccgc ggcgaacacc gaaaactccg cgcccacgtg ctccagcacg
     1141 tgcttcatca agacttcctc gaaggcgtcg gtctcgagat cccatggcgt gacctcgata
     1201 tccaacagct tgtccggttc gcaggccgcg aagccgtcga cattgagcca gccttcccgc
     1261 ttgtcgaacc cgcacccgag gttgagcttc atgtccgcct tacctttccg cgtcccggcc
     1321 ccttgcaggt tgacgttaac gtcagccggt cttgtcttcc gcagcggcgc cttcatacag
     1381 tcgttttgac gcgccaatag agcgccttgg attttcacga gggagcacgg ccatggccga
     1441 agcctatatc gtagctgcga cgcgcaccgc tggcgggcgc aagggcggac gtctccgcga
     1501 gtggcacccg gccgacctgg gcgcggtggt cctgaacgaa ctgctcgacc gcaccggcat
     1561 cgacccggcc gtggtcgagg acgtggtgat gggctgcgtc atgcaggtgg gagagcaggc
     1621 caccaacatc ggccgcggcg cggtcctggc gtcccggttg ccggaaagcg tgccggccac
     1681 cagcgtcgac c
//
LOCUS       DATAJL010000019         2494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13116,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000019 DATAJL010000000
VERSION     DATAJL010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13116"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VHN39_00290"
     CDS             <1..470
                     /locus_tag="VHN39_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX2814801.1"
                     /translation="NMGADTIHGGSGDNWVVGGQGNDLLFGGGGTNLILGNLGDDTLT
                     AGPGLDVLRGGKGDDSIAGGAGNDYISGDRGADTESGGAGADIFHTSQDAGVDKVLDF
                     NLAEGDRVQLDPGTTFTVNQVGADTVIDTGNGNQMILVGVQMSNLTPGWIFGA"
     gene            complement(519..1295)
                     /locus_tag="VHN39_00295"
     CDS             complement(519..1295)
                     /locus_tag="VHN39_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEX2814802.1"
                     /translation="MTKRALKRQLREGAFDAGQFAGDDKIRRLPLDRDRGWSPLAHHN
                     SNDEREQGYLKTIKAKSPGQEELIKAIDAKNLVMALGPAGTGKTYLAIAKAVEALESG
                     SVGRIVLSRPAVEAGESIGYLPGDAEDKLAPYLRPLYDALSDRLSMKRVRALMAEGAI
                     EIAPVGFMRGRTLNNAFVVIDEAQNCTYVQLKMLLTRLGWHSTMVVTGDPDQSDLLPE
                     FSGLRTVAEKLSTLPNIAVVRLADRDIVRHPLVAEMLGVL"
     gene            1638..2165
                     /locus_tag="VHN39_00300"
     CDS             1638..2165
                     /locus_tag="VHN39_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEX2814803.1"
                     /translation="MSVYNLGSVTPELPNYDEYWIAPSASVMGRVILKKNASIWWGAT
                     LRGDNDPITVGENSNVQDGSVLHTDTGSPLTLGANVTVGHMVMLHGCTIGDNSLVGIG
                     SIILNGARIGKNCLIGAGSLIGEGKEIPDNSLVMGAPGRVIREVSPEQAMMLAGGAAH
                     YVENWKRYRRELKEA"
     gene            2189..>2494
                     /locus_tag="VHN39_00305"
     CDS             2189..>2494
                     /locus_tag="VHN39_00305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2814804.1"
                     /translation="MAYEFIKVEREGPVTTVTLNRPEVMNALHSPAHFELGEAFDAFA
                     ADTGQWVAIVTGAGDRAFSAGNDLKHQAGGGKMGSPPSGFAGLTSRFDLAKPLIAAVN
                     "
BASE COUNT          445 a          755 c          890 g          404 t
ORIGIN      
        1 gcaacatggg cgccgacaca atccatggcg gcagcggcga caactgggtg gtgggcggcc
       61 agggcaatga cctgctgttc ggcggcggcg ggaccaacct gatcctgggc aacctcggcg
      121 acgacaccct gacggcggga ccgggcctgg acgtcctgcg cggcggcaag ggcgacgatt
      181 ccatcgccgg cggggcgggg aacgactaca tctcaggcga ccggggcgcg gatacggaaa
      241 gtggcggggc gggcgcggac atcttccaca cctcgcagga cgccggcgtc gacaaggtgc
      301 tggacttcaa cctggcggaa ggcgaccgcg tccagctcga ccccggcacg accttcaccg
      361 tcaatcaggt tggggcagac accgtcatcg acacggggaa cggcaaccag atgatcctgg
      421 tcggcgtgca gatgtcgaac ctcacgcccg gctggatctt cggcgcctag ggcgcgccct
      481 cccgctcggg cgggaaggcg ctttccttgg gttcggcgct agagaactcc cagcatctcc
      541 gccacgagcg ggtggcggac gatgtcgcgg tcggcgaggc ggacgacggc gatgttgggg
      601 agggtggaga gcttttcggc gaccgtcctg aggccggaga attccggcag caggtccgat
      661 tggtcggggt cgccggtgac caccatggtg gagtgccagc ccaggcgggt gagcagcatc
      721 ttgagctgca cgtaggtgca gttctgggcc tcgtcgatca ctacgaaggc gttgttgagg
      781 gtgcggccgc gcatgaagcc gaccggggcg atttcgatgg cgccctcggc catcagggcg
      841 cggacccgct tcatggacag gcgatcggag agcgcgtcgt agagcgggcg cagatagggg
      901 gcgagcttgt cctcggcgtc gccgggcagg tagccgatgc tctcgcccgc ctccaccgcg
      961 gggcgcgaga ggacgatgcg cccgacgctg ccggattcca gagcctccac ggccttggcg
     1021 atggcgaggt aggtcttgcc ggtgccggcc gggcccagcg ccatgaccag gttcttggcg
     1081 tcgatcgctt tgatcagctc ctcttggcca gggctcttgg ccttgatggt cttgaggtag
     1141 ccctgttcgc gctcgtcgtt ggagttgtga tgcgccagcg gcgaccagcc cctgtcccga
     1201 tcaagcggca gccggcggat cttatcgtca ccggcaaact ggccagcgtc gaacgcgcct
     1261 tcgcgcagct gtcgcttaag ggctcgcttg gtcatcaaaa gcctccgttg gccccacgaa
     1321 atctggggca agaaaaaagg gcgtctccgc catggagcgc cctttgggtg gtcgggatga
     1381 atcgaagcag gcggcgtgcg cggcgcaatg agtgtccggg gggctctccc cgagatgccg
     1441 gtccggatcc gaggatccga gggaacaaca cactcagcgc catcaactcc gcctagcgcg
     1501 agacacggag ccgatgttcg gccccgcagc ggattccagg aaggctagcg ccccctcgaa
     1561 tcgcccgact agaatgagcc taacttggtt tcggaaatgt taaacggacg gattgtcgca
     1621 agaaacgggg tgcgcggatg agtgtctaca acttaggcag tgtgacacct gaattaccaa
     1681 attatgacga atactggatt gcgcctagcg cttcggttat gggccgagtg attctcaaga
     1741 agaacgcctc aatctggtgg ggcgccacgc tgcgcggcga caacgatccg atcacggtcg
     1801 gcgagaactc caacgtgcag gacggctcgg tcctgcacac cgacaccggc tcgcctctga
     1861 cactgggggc caatgtgacg gtcgggcaca tggtgatgct gcacggctgc accatcggcg
     1921 acaattccct ggtggggatc ggctcgatca tcctgaacgg ggccaggatc gggaagaact
     1981 gtctgatcgg cgcgggcagc ctgatcggcg agggcaagga gatcccggac aactccctgg
     2041 tgatgggcgc gcccggccgg gtgatccgcg aggtttcgcc cgagcaggcg atgatgctgg
     2101 ccggcggggc ggcgcactac gtcgagaact ggaagcggta tcggcgcgag ctcaaagagg
     2161 cttgagtagg gaaaacggga gaatagccat ggcctatgag ttcatcaagg tggagcgcga
     2221 ggggccggtc accacggtga ccctgaaccg gcctgaggtg atgaacgcgc tgcattcgcc
     2281 ggcgcacttc gagctgggcg aggcgttcga cgccttcgcc gccgacaccg gccagtgggt
     2341 cgccattgtg accggggccg gggaccgcgc cttttccgct ggcaacgacc tgaagcatca
     2401 ggccggcggc ggcaagatgg gcagcccgcc gtcgggcttc gcgggcctga cctcgcggtt
     2461 cgacctggcc aagccgttga tcgcggcggt aaac
//
LOCUS       DATAJL010000020         4060 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25988,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000020 DATAJL010000000
VERSION     DATAJL010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25988"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            321..650
                     /locus_tag="VHN39_00310"
     CDS             321..650
                     /locus_tag="VHN39_00310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814805.1"
                     /translation="MSERMERPWALMRHHAGWADVFHIETESSDSITGFYPDRETVGP
                     PVSYSVRAVLARFATLEAARAAREGAVAEWRKHDAGVRDAEAILREAEKAREDAWLKC
                     LRDAAER"
     gene            complement(680..1159)
                     /locus_tag="VHN39_00315"
     CDS             complement(680..1159)
                     /locus_tag="VHN39_00315"
                     /inference="COORDINATES: protein motif:HMM:NF013487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2814806.1"
                     /translation="MALKTMLAAAVLTAGLIARTALAQDPASASPTPGGKAVVVRQAH
                     YKELNAAFRVINEQLRSEAPDKGAISANAARMKALAADLPSWSPKGSGPEAGVKTAAK
                     AEIWTDAEGFAAAATRLQGETAKLADTAAAGDMDALKAQVRATGGACKACHDKYRAS"
     gene            complement(1212..3266)
                     /locus_tag="VHN39_00320"
     CDS             complement(1212..3266)
                     /locus_tag="VHN39_00320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HEX2814807.1"
                     /translation="MTTDTAAIPTATKPQAEPSAKRRALVWTGGVFLALAVVTAILAA
                     IWDWNWFRGPVSAIASARMHRQVSINGDLRVHLWSWQPSATVDRVRIANPGWAGQGSL
                     ADIDRIAVQIRLAALFTGHLDLRLLEFDRPRVALYRDAQGRATWDFSDGAKPDEPLSL
                     PPIRKFIIDGGQLNYRDDERKLIFSGTIDAKERLGEANKGFQMTGKGVLNAQPFGLQV
                     TGGPLLNIDRNKPYPFDADIHAGQTYVTAQGAVPKPFDLAQFYMNVTGRGPDLADLYG
                     LTGVPMPNTPPYSLHGRLSRDAHLWKLENIGGRVGSSDLAGQLSLRTGDKRPFLTADL
                     RSQSLDFPDLGALFGGARKTGAIASPQQKAVAQTMQAEARIFPDATLNFSRIRGLDAD
                     VSFKAAAIRGAPINLRAGSARVKLNAGLLRAEPLDLDLPQGHIVGFVQLDGRKTDAVT
                     DVDLRLVGGRLESLVPVTFQGAAPFAGPIVGRVKLHGTGDSVHDAMADAYGEALVVAP
                     SGEIRRSLAELAGVDLIKGLGLLFAKDQATTPIRCAVLHFTGKGGVLSADRLIIDTGP
                     VLIDGGGAVNLDTEKLAFTVRGHPKTFQLLRLHAPITVSGPMLAPQVSVQKGGAIAQG
                     GAALALATLLSPVAVLLPFVDAGLAKDANCASLLAQGKAEGAPVKSPVAAGPVAPLTA
                     HR"
     gene            complement(3324..3884)
                     /locus_tag="VHN39_00325"
     CDS             complement(3324..3884)
                     /locus_tag="VHN39_00325"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEX2814808.1"
                     /translation="MKRALDIAGGLLGLIVLSPLLLGLAIAVRLESPGPALHWSKRVG
                     RRNRIFPMPKFRSMRTDAPDVATHLLDDPDRWVTRLGAFLRRSSLDELPQLWSVLKGD
                     MSLVGPRPALFNQDDLVALRTAAGVDALRPGLTGWAQINGRDELPIPEKAELDREYLQ
                     RMSLAFDLRILLVTARTALSGRGVTH"
BASE COUNT          607 a         1383 c         1449 g          621 t
ORIGIN      
        1 tggacatcca gcggcacccg ggcgcgcagg accgaggtcg ctgcgccttc gatgtcgcgg
       61 gcgatcacgc cacagacata gccgccgttc ccggaatcgg gaggcccgcg gaactgctgg
      121 gggatgacga tcttggccaa aggggctcgt tcgcgacgcc tgggaatcaa accaatgacc
      181 gagccttttc cacggaacag gttaaggacc aaagaccaaa tcgccgcgcg cgacgttgga
      241 gcgcgctgga cgctgcgcta gtttgcgcgg gcgagccgcc tgcgggcgga ttcgaacagc
      301 tgattttgag gagatatcgg gtgagcgagc ggatggaacg gccctgggcc ctgatgcgcc
      361 accacgccgg atgggcggac gtcttccaca tcgagaccga gagctccgac tccatcaccg
      421 gcttctatcc ggaccgcgag accgtcggtc cgccggtgag ctattcggtg cgcgcggtgc
      481 tggcccggtt cgcgacgctc gaggccgccc gcgccgctcg cgaaggcgcg gtcgccgaat
      541 ggcgcaagca cgacgccggg gtccgcgacg ccgaagccat cctgcgcgag gcggaaaagg
      601 ctcgggagga cgcctggctg aagtgcctga gggacgctgc cgagcggtag gtccgctccg
      661 cagtcaggaa cccccggagc taggatgcgc ggtatttgtc gtggcaggcc ttgcaggccc
      721 cgccggtggc gcggacctgg gccttgaggg cgtccatgtc ccctgccgcc gcggtgtcgg
      781 ccagcttggc ggtctcgccc tgcagcctgg tcgccgcggc ggcaaagccc tccgcgtcgg
      841 tccagatctc cgccttggcg gccgtcttga cgcccgcctc cgggccgctg cccttcgggg
      901 accagctcgg caggtcggcg gcaagcgcct tcatcctggc ggcattggcg ctgatcgcgc
      961 ccttgtccgg cgcttcgctc ctgagctgtt cgttgatcac ccgaaaggcg gcgttcagct
     1021 ccttgtagtg cgcctggcgc acgaccaccg ccttgccgcc cggggtcggc gacgcggagg
     1081 cgggatcctg ggcgagcgcc gtccttgcga tcaggccggc ggtcaggacc gcggccgcga
     1141 gcatcgtctt cagggccatg accagcgttc tccgtcggcg gaccgtccgg ccgcgcgatg
     1201 atgtgaaggg atcagcgatg cgccgtcaac ggcgcgacgg gcccagccgc gacaggggac
     1261 ttcaccggcg cgccttctgc ctttccctgc gccagcaggc tcgcgcaatt ggcgtccttg
     1321 gccaggcccg cgtcgacgaa gggcaggaga acggcgaccg gcgacagcag ggtggccagg
     1381 gcaagcgccg ccccgccctg agctatagcg ccgcctttct gaacgctgac ctgaggcgcc
     1441 agcatcggac cgctcaccgt gatcggggcg tgcagccgca gtaactgaaa cgtcttcggg
     1501 tggccgcgca ccgtgaaggc gagcttctcg gtgtccagat tgaccgcccc gccgccgtcg
     1561 atcagcaccg gtccggtgtc gatgatcagc cggtcggccg agagcacgcc gcccttgccg
     1621 gtgaaatgca gcaccgcgca acggatgggc gtggtcgcct ggtccttggc gaacagcagg
     1681 ccaagcccct tgatcaggtc aacgccggcc agctcggcca gcgaccggcg gatttcgccg
     1741 ctgggcgcga ccacgagggc ctctccgtag gcgtcggcca tcgcatcgtg cacggagtcg
     1801 ccggttccat gcagcttgac ccggccgacg atcggcccag cgaagggcgc ggcgccctgg
     1861 aacgtcaccg ggacgaggct ctccaggcgc ccgcctacca gccgcaagtc cacgtcggtg
     1921 acggcgtcgg tcttgcggcc gtcgagctgc acgaagccca cgatgtggcc ctgcggcagg
     1981 tccaggtcca gcggctcggc ccgcaagagg cctgcgttga gcttcacgcg ggccgacccg
     2041 gccctgaggt tgatcggcgc gcctctgatc gcggcggcct tgaagctcac gtccgcgtcg
     2101 aggccgcgaa tccggctgaa gttcagtgtc gcgtcgggga agatgcgcgc ctcggcctgc
     2161 atcgtctggg ccacggcctt ctgctgcggc gaagcgatgg cgccggtctt gcgcgcgccg
     2221 ccgaagagag cgccgaggtc ggggaagtcg aggctctggg acctgaggtc ggcggtcagg
     2281 aatgggcgct tgtccccggt gcgcagggat agctgaccgg cgagatcgct tgagcccacc
     2341 cggccgccga tgttctccag cttccacagg tgcgcgtctc gcgagaggcg gccgtgcaga
     2401 ctgtagggcg gggtgttggg catcggcacg ccagtcaggc catagaggtc cgccaggtcc
     2461 ggcccgcgcc cggtgacgtt catgtagaac tgggccaggt cgaagggctt cggcaccgcg
     2521 ccctgcgccg tcacataggt ctggccggcg tgaatatcgg cgtcaaaggg atagggcttg
     2581 ttgcggtcga tgttgagcag cggcccgccg gtcacctgca ggccgaaggg ctgggcgttc
     2641 agcacgccct tgccggtcat ctggaagccc ttgttcgcct cgcccagccg ttccttggcg
     2701 tcgatcgtcc cggagaagat cagcttgcgc tcgtcgtccc tgtagttgag ctggccgccg
     2761 tcgatgatga acttgcggat cggcggcagg ctgagcggct cgtcgggctt ggcgccgtcg
     2821 gagaagtccc aggtcgcgcg gccctgcgcg tcccgataga gcgccacccg cggccggtcg
     2881 aactccagaa gccgcaggtc caggtggccg gtgaacagag ccgccagccg gatctgcacg
     2941 gcgatgcggt cgatgtcggc caggctcccc tgacccgccc agccgggatt ggcgatgcgg
     3001 acgcggtcca ccgtggcgct gggctgccag gaccacagat ggacccgcag gtcgccattg
     3061 atgctgacct gacggtgcat ccgcgccgaa gcgatggccg aaaccggccc gcggaaccag
     3121 ttccagtccc agatcgccgc caggatcgct gtgacgacgg ccaaggccag gaagacgccg
     3181 ccggtccaga caagcgcccg gcgcttcgcc gaaggttcgg cttgcggttt cgtggccgtg
     3241 ggtatcgcgg cggtgtcggt ggtcaagagg tctgctccca ggcgcccagt cgcctctaac
     3301 gcgcgagagc ctgtttcggc gccctagtgg gtcacgcctc ggccgcttag cgccgtacgg
     3361 gcggtcacca ggagaatgcg caggtcgaag gccagcgaca tccgctgcag atactctcgg
     3421 tcaagctcag ccttctccgg gatcggcagc tcgtcgcgcc cgttgatctg cgcccagccg
     3481 gtgagccccg gccgcaaggc atcgacgccg gccgcggtgc ggagcgccac taggtcgtcc
     3541 tggttgaaga gcgcgggcct gggccccacc aggctcatgt cgcccttcag cacgctccag
     3601 agctgcggca gctcatcgag gctggagcgg cgcagaaagg cgccaaggcg cgtgacccac
     3661 cggtcagggt cgtccagcag gtgggtcgcc acgtccggcg cgtcggtgcg catgctgcgg
     3721 aacttcggca tcgggaaaat gcggttcctg cgccccaccc gttttgacca atggagcgcc
     3781 gggccgggac tctccaggcg cacggcgatc gccaagccca ggagcagcgg cgacagcacg
     3841 atgaggccaa ggaggccgcc ggcgatgtcc aaggcccgct tcaagatcac ccttccccca
     3901 agccgtcgca gatcggcgcc tcaggggttg taggcgcagc cgcgcaggcg cgccaagtca
     3961 gtcgccaaag tcagttggag gtgtcggacg gcgcaggcgc agcggccttc ttcctgggct
     4021 tgggcgtcgg cgcgggctcg gcggccgcct cggcggccgc
//
LOCUS       DATAJL010000021         2017 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13125,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000021 DATAJL010000000
VERSION     DATAJL010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13125"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..344
                     /locus_tag="VHN39_00330"
     CDS             <1..344
                     /locus_tag="VHN39_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl transferase family 1"
                     /protein_id="HEX2814809.1"
                     /translation="PEPVVRRRTDPVRGDPFVAFAGFPTHVLTPETRLAAAPGATGDD
                     VRNLTAMLDLTFKTLRATLEECAQALDMLACGKATIAREVLGAFPVERRRAVELGLAW
                     MAKLGLVDWLV"
     gene            518..715
                     /locus_tag="VHN39_00335"
     CDS             518..715
                     /locus_tag="VHN39_00335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814810.1"
                     /translation="MDARDLVDVAIDEDPRAPCLWVPSELWPEFLASIPQKPNLIGAV
                     IYRNKTVREGAPLTDITTLRP"
     gene            720..1913
                     /locus_tag="VHN39_00340"
     CDS             720..1913
                     /locus_tag="VHN39_00340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013721864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2814811.1"
                     /translation="MRPASILIAARGVRGFGDGFTALLLPVYLTTLGFSAFRVGVLTT
                     ATLLGSAALTLAVGLAGHRFPAKRLLFAACVLMAATGLAFSQAHAFWVLAVVGFVGTL
                     NPSGGDVSAFLPLEQSLLAHAGAPSLRTHLFARYNLSGSLMAALGALSVGLLVPLRAV
                     TGLGQLALIEWAFAAYGLLGLISANLYRSLPDAPAETEAPRTPLGPSRRNVYGLAALF
                     SLDSFGGGFMVQSLFALWLFHRFGLSLAAAGAFFFWTGALSALSQLAAPVLARRIGLI
                     RTMAFTHIPASLCVIAVAFAPNVTVAFALLFVRALLSNMDVPARTSYVMAIVTPAERA
                     AAAGVTNVPRSLASAFSPALAGLLFSLSPFAWPLVIGGSLKITYDLLLLWRFQKVRPP
                     EEIDP"
BASE COUNT          250 a          713 c          670 g          384 t
ORIGIN      
        1 cgcccgaacc ggtcgtgcgc cgcaggaccg atccggtgcg gggcgatccc ttcgtcgcct
       61 tcgcgggctt tcccacgcat gttctgacgc ccgaaacccg gctcgccgcc gcgcctggag
      121 ccaccggcga cgacgtccgc aatctgaccg ctatgctcga cctcacgttc aagaccctgc
      181 gcgccaccct tgaggaatgc gcccaggctc tcgacatgct ggcctgcggc aaggccacga
      241 tcgcccgcga ggtgctgggc gccttccccg tggagcggcg gcgggcggtg gagctcggcc
      301 tggcctggat ggccaagctc ggcctggtcg actggctggt ctagcgtgtt ggatttgaag
      361 ttcgcctcat tcagggccgt gcgccgagcg aacttcaaat ccaaagaagc acactagaaa
      421 gcttacactt gcctggtgtc cttatcgctt ccgaagttcg tccggcgccg gccgcaagcg
      481 attgcgaact tcggaatcgg gacactagga tggcgccatg gacgcgcgcg acctggtgga
      541 cgtggcgatc gacgaggacc cgcgggcgcc ctgcctgtgg gtgccgtcgg agctgtggcc
      601 ggagttcctg gcctcgatcc cccagaaacc gaacctgatc ggcgccgtga tctaccgcaa
      661 caagaccgtc cgcgagggcg cgcccttgac cgacatcacc acgctcaggc cctgaggcct
      721 tgcggcccgc cagcatcctg atcgcggcga ggggcgtgcg cggcttcggc gacgggttca
      781 ccgcgctgct gctgccggtc tatctgacca ccctggggtt cagcgccttc cgggtgggtg
      841 tcctgaccac cgcgacgctg ctgggctcgg cagcgcttac cctggctgtg gggctggccg
      901 ggcaccggtt tcccgccaag cggctcttgt tcgcggcctg cgtcctgatg gcggcgacgg
      961 gcctggcctt ctcccaggcc cacgccttct gggtgctggc ggtcgtgggt ttcgtcggca
     1021 cgctcaatcc ctcgggcggc gacgtcagcg ccttcctgcc cctggagcag tcgctgttgg
     1081 cgcatgcggg cgcgccgtcg ctgcgcaccc acctcttcgc ccgctacaac ctctccggtt
     1141 cgctgatggc ggcgctgggc gcgctcagcg tcgggctgct ggttccgctg cgggcggtca
     1201 cggggctcgg gcaactggcg ctgatcgaat gggccttcgc ggcctatggc ctgctcgggc
     1261 tgatctccgc gaacctctac cggagcctgc cggatgcgcc ggcggagacc gaggcgccgc
     1321 gcacaccgct gggaccctcc cgccgaaacg tctatggcct ggccgcgctc ttcagcctgg
     1381 attccttcgg cggcggcttc atggtccagt cgctgttcgc gctctggcta ttccaccgct
     1441 tcggcctgtc gctagcggcg gccggggcct tcttcttctg gaccggggcg ctgtctgcgc
     1501 tgtcgcagct cgccgccccg gtgctggccc ggcgcatcgg cctgatccgg accatggcct
     1561 tcacccatat cccggcgagc ctctgcgtca tcgcggtggc cttcgcgccc aatgtgaccg
     1621 tggccttcgc cctgctgttc gtccgcgccc ttctgtcgaa catggatgtg cccgcgagga
     1681 cctcctacgt catggccatc gtcacgccgg cggagcgggc ggccgccgcc ggggtgacca
     1741 atgtgcccag gagcctcgcc tcggccttca gcccggcgct ggcgggcctg ctgttcagcc
     1801 tcagcccctt cgcctggccg ctggtgatcg gcgggtcgct aaagatcacc tatgacctgc
     1861 tgctgctctg gcggttccag aaggtgcgtc cgccggagga gatcgacccc tagtgtcccg
     1921 attccgaagt tcgtaggcgc ttgcggccgg cgcgggacga actttggaat cgatgaggac
     1981 actaggaagt ctatgtctct agtgtgcttc tttggat
//
LOCUS       DATAJL010000022         2758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_90353,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000022 DATAJL010000000
VERSION     DATAJL010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90353"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /locus_tag="VHN39_00345"
     CDS             <1..467
                     /locus_tag="VHN39_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HEX2814812.1"
                     /translation="LEHAAWSPGLREVRVIDLFAGSGALGFEALSRGAAFCIFVETDE
                     AARGAIRENVEAMSLFGATRVHRRDATDLGVRPGGDGPPFELAFLDPPYAKGLGEAAL
                     EKLAAGTWLAPGAIVVFERGAAEPDVSAPGYEVLDVRNYGAARVHFLRFGAA"
     gene            524..1297
                     /locus_tag="VHN39_00350"
     CDS             524..1297
                     /locus_tag="VHN39_00350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004622318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX2814813.1"
                     /translation="MSGHTVKQVARLSGVSVRTLHHYDEVGLLKPASVGQNGYRYYGR
                     EELLRLQQILFHRELGFSLEEIGRTLDAKGFDKVAALKAHRAKLEAETRRYRQLMRTI
                     DDTLAALEGDAKMEDKAMYRGFDPAKQAEYEKELVAKGGPEMQGHIDDAKKGMAGWKQ
                     SDFDAMQAEADAIEAGMAKALVDGLPADSAAVTALMRRQHAWIGKSWNKSAPAAAFTG
                     LGQMYVDDPRFRERYDGRQAGLAEYMSAAMKSFAERELA"
     gene            complement(1328..2119)
                     /locus_tag="VHN39_00355"
     CDS             complement(1328..2119)
                     /locus_tag="VHN39_00355"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2814814.1"
                     /translation="MSKAALRLRPANPEPSPCKLCGGASRLFGVTDFNRNCEEARGKF
                     LPLSGVAVYYRRCEACGLVYSEAFDDWAPEDFETHIYNAAYADVDGDYEAIRPASNAQ
                     MIVRAFGASANNLAVLDYGGGNGDFARALVEAGFRQAATYDAFHPDHRLRPEIDYDLI
                     TCFETLEHMPDPLAGAADIAGFLKPDGMVFFSTLTQPADFATLGMQWWYIGPRNGHVT
                     LHSRQSLAILWARHGLKVASFNDNFHAAFRTVPAFASHLIRTQMS"
     gene            complement(2116..>2758)
                     /locus_tag="VHN39_00360"
     CDS             complement(2116..>2758)
                     /locus_tag="VHN39_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA mismatch repair protein MutL"
                     /protein_id="HEX2814815.1"
                     /translation="PPSYAAGFAEPGAPPPFDPIDFPLGAARAQLHETYIVAQTRDGV
                     VIVDQHAAHERLVYERMKREMADGGVTRQALLLPEVVELDPAEAERVCAKAEELAALG
                     LMLESFGPGAVLVRETPALLGETNVQGLVRDIADDLAENGQALALKERLEDVCSTMAC
                     HGSVRAGRRLTAPEMNALLRQMEATPHSGQCNHGRPTYVELKLADIERLFGRR"
BASE COUNT          447 a          904 c         1000 g          407 t
ORIGIN      
        1 tcctggagca tgcggcctgg tcgccgggcc tgcgcgaggt gcgggtcatc gatctcttcg
       61 cgggctccgg cgcgctgggc ttcgaggccc tgtcgcgggg cgcggccttc tgcatcttcg
      121 tggagacgga cgaggcggcc cgaggcgcga tccgcgagaa cgtcgaagcc atgagcctgt
      181 tcggcgccac ccgcgtccac cgccgcgacg ccaccgacct gggcgtccgc cccggcggcg
      241 acggcccgcc cttcgaactc gccttcctcg acccgcccta cgcgaagggg ctgggcgagg
      301 ccgctctgga aaagctcgcc gccggaacct ggctggcgcc cggcgccatc gtggtgttcg
      361 agcgcggcgc cgccgagccc gacgtcagcg cgccgggcta cgaggtgctg gacgtccgca
      421 actatggcgc ggcgcgcgtg cattttcttc gtttcggagc cgcttgaccc tcacgccccg
      481 tgaggcctga taccccggcc atcgacgagg aaagacgacg aacgtgagcg gtcatacggt
      541 caagcaggtg gcgaggctgt cgggcgtcag cgtccgcacg ctgcaccact acgacgaggt
      601 aggccttctg aagcccgcct cagtcggcca gaacggctac cgctactacg gccgcgagga
      661 actgctgcgc ctgcagcaga tcctgttcca ccgcgagctc ggcttctccc tggaggagat
      721 cgggcggacg ctggacgcca agggcttcga caaggtggcg gccctcaagg cgcaccgggc
      781 gaagctggag gccgagaccc ggcggtaccg gcagctgatg cgcacgatcg acgacaccct
      841 cgccgccctc gaaggagacg cgaagatgga agacaaggcg atgtaccggg gcttcgaccc
      901 cgcaaaacag gcggaatacg aaaaggagct ggtcgcgaag ggcggacctg aaatgcaggg
      961 ccacatcgac gacgccaaga aaggcatggc gggctggaag cagtccgact tcgacgccat
     1021 gcaggccgag gcggacgcca ttgaggccgg catggccaag gcgctggtcg atggcctgcc
     1081 ggcggactcc gcggcggtga cagcgctgat gcgccggcag cacgcctgga tcggcaagag
     1141 ctggaacaag tccgcccctg ccgcggcctt cacgggcctg ggccagatgt acgtcgacga
     1201 tccgcgattc cgcgagcgtt acgacgggcg gcaggcgggg ctcgccgaat atatgtcggc
     1261 ggccatgaaa tcgttcgcgg agcgggagct ggcataggcg cgcagcggag tcctggggct
     1321 gtgcgcctca ggacatctgc gtcctgatca ggtggctcgc gaacgctgga accgtgcgga
     1381 aggccgcgtg gaagttgtcg ttgaaagagg cgaccttcaa cccgtggcgg gcccagagga
     1441 tcgccagaga ctggcgcgaa tgcagggtca cgtgtccgtt gcgtgggccg atgtaccacc
     1501 actgcatgcc aagcgtcgcg aagtcggcgg gctgggtaag ggtcgagaag aacaccatcc
     1561 cgtccggctt caggaagccc gcgatgtccg ccgcgccggc cagggggtcg ggcatgtgct
     1621 caagggtctc gaagcaggtg atgaggtcgt agtcgatctc gggccggagt cggtggtcgg
     1681 gatggaaggc gtcataggtg gcggcctggc gaaagcccgc ctcgacaagt gcgcgggcga
     1741 agtcgccatt gccgccgcca tagtcgagca cggccagatt gttggccgag gcgccgaacg
     1801 ccctgacgat catctgggcg ttgctggccg ggcggatcgc ttcgtagtcg ccgtccacgt
     1861 cggcgtaggc ggcgttgtaa atatgggtct cgaagtcctc cggcgcccag tcgtcgaacg
     1921 cctcggaata gaccaggccg caggcctcgc accggcggta gtagacggcg acgccggaca
     1981 acggcaggaa cttgcctcgc gcctcctcgc agttgcgatt gaagtcggtc accccgaaca
     2041 ggcgcgacgc gccgccgcag agcttgcacg ggctgggctc ggggttcgcc ggccgcaacc
     2101 gcaacgccgc cttgctcatc gccgcccgaa caggcgctcg atgtcggcga gcttcagttc
     2161 gacgtaggtg ggccggccgt ggttgcactg gccggagtgg ggcgtggctt ccatctgacg
     2221 gagcagggcg ttcatctccg gcgcggtcag cctgcggccg gccctcaccg agccgtggca
     2281 ggccatggtc gagcagacgt cctccagccg ttccttcagc gccagcgcct ggccgttctc
     2341 ggccaggtcg tctgcgatgt ctcggaccaa gccctggacg ttggtctcgc cgagcagggc
     2401 cggggtctcg cgcactaaca ccgcgcccgg gccaaaggat tccagcatca gacccagcgc
     2461 cgccagctct tcggccttgg cgcagacccg ctcggcctcg gcggggtcga gctcgacgac
     2521 ctcgggcaga agcagggcct ggcgggtcac cccgccgtcg gccatctcgc gcttcatgcg
     2581 ctcatagacc aggcgctcat gggcggcgtg ctggtcgacg atgacgacgc cgtcgcgggt
     2641 ctgggcgacg atgtaggtct catgcagctg ggcgcgagcg gcgccgagcg ggaagtcgat
     2701 cggatcgaac ggcggtggcg cgccgggctc ggcgaagccg gcggcgtaac tcggtggg
//
LOCUS       DATAJL010000023         3603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_77665,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000023 DATAJL010000000
VERSION     DATAJL010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77665"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(493..1548)
                     /locus_tag="VHN39_00365"
     CDS             complement(493..1548)
                     /locus_tag="VHN39_00365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814816.1"
                     /translation="MKTLLATCVLAIGLSAAAASAQPPASTGPYKVLKTVKAGGDGGF
                     DYVYADAANRRLYVPRSGPMARVSVFNLDSLEPVGEIAGVSGHGAAVDAKSGHGFASS
                     KPLAMWNAKTLVSLKPIEVQGGPDGILGDPASQRIYVLSHGAPNVTVINAVDGAVVGT
                     IDIGGAPEQAVTDGKGHLYIDLEDKDQVAVVDTKTMTKTGAYGLEGKCGTPAGLAFDV
                     KNHVLFVACRNPATMTMLNSDSGKILAILPIGAGVDGAVFNPATREAFSSQGDGTLTV
                     VKELSPTSFVVEQTVQTQVSAKTLTLDAKTNHVLLIAAEYGPAPAASPAAPGAPPPRP
                     RRGPMLPGSFAILVVGK"
     gene            1686..>3603
                     /locus_tag="VHN39_00370"
     CDS             1686..>3603
                     /locus_tag="VHN39_00370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEX2814817.1"
                     /translation="MTQRTFVAVLAAALALAAPAFAQAPPITPDIPAQFEKPTAQNDW
                     VKRTAMIPMRDGTRLYTVIVMMKGTRDAPILLTRTPYNAKKRAERFASPHIVDELAQL
                     DEPFVADGYIRVYQDIRGKYGSEGDYVVTRPLIGPLNHTTVDHATDTWDTIDWLVKNI
                     PETNGRVGMIGSSYDGFTTLMGLINPHPALKAAVPQSAMVDGWMGDDFFHYGAFRTTN
                     LDYLAGQMTARGEGVVVSRESFDEYTNFLRAGSIDSYARAAGLDQIPYYRKLTEHAAY
                     DAFWSEQALDKELARQPLKVPTMWVGALWDQEDMWGTIHAYMATEPKDANNDMNYLVL
                     GPWRHSGVNYEQRQLNALKLPGDTATEFRMKVLKPFLDEHLKTNGPKAHTPPVFIFRT
                     GAMEWDRLAKWPPACEDGCGAKMTPLYLEPDQRLGFERLGGPASAYDEYVSDPAKPVP
                     YVHRPVRSDDGDQWRYWLTTDQRHVDGRTDVLTYTSNVLTSPVQISGAPIVNLFASTS
                     GTDSDWVVKIIDVYPDTVPSQVELGGYELPIAMDIFRGRYRESFVTPKAIPANVVEKY
                     RFVMPTANHVFEPGHRIMVQIQSSWFPLYDRNPQTFTPNIFFAKPADYQKATQRVFHG
                     GAQATNIELPVVEAH"
BASE COUNT          621 a         1250 c         1108 g          624 t
ORIGIN      
        1 tggcgaacag aatgacggcg gcctgagccg gcgctgcagc ggcggcgacc gacacagcaa
       61 gtgcggccgt tgttgcgaat gtcgtcagcg ctctcatacc cagtcctcgt ccacgcggat
      121 ggcccgaaat cggccctgaa ggaatgtcta ctgagaaatt atccacctgt cgttgtgatt
      181 ctcctcacac gagagtttgt cgcatattgt actcagttac agatgtggac cgcataatct
      241 tcgcataata ttttggcccg actgctcttg cacgtcagat ggagaccggt tgatctgcga
      301 aacccggcct gcctagtctt ggacaagctt ggcgcgcccg cacggatgcg tcgccggcaa
      361 gatgcgggag agattgcgcc ggcatcgtta acgttctgag gctgcttccc cgccccgaca
      421 gtgacttgga accggagccc ggcttggccg gcggcgcgat cctcttccag agcgcgtccg
      481 ccggcgcccg gcctatttgc cgacaaccag gatcgcgaac gaacccggca gcatgggccc
      541 tcgtctcggc cggggcggcg gcgcgcccgg cgcggccgga gacgccgcgg gcgcgggccc
      601 gtattcggcg gcgatcagca ggacgtggtt ggtcttggcg tccagcgtta aggtcttggc
      661 gctgacctgg gtctggacgg tctgctccac cacgaagctg gtcgggctca attccttgac
      721 gacggtgagc gtgccgtcgc cctgcgagct gaaagcctcc ctggtggcgg gattgaagac
      781 cgcaccgtcg acgcctgccc cgatcggcag gatagccagg atcttgccgc tgtcggagtt
      841 cagcatggtc atggtcgccg gattgcgaca ggcgacgaac aggacgtggt tcttgacgtc
      901 gaacgccagg cccgcgggcg tcccgcattt gccctccagg ccataggcgc ctgtcttggt
      961 catggtcttg gtgtcgacca cggcgacctg atccttgtcc tcaaggtcga tgtagaggtg
     1021 gcccttgcca tcggtgacgg cctgttcggg cgcgccgccg atatcgatcg tgccgaccac
     1081 ggcgccgtcc acggcgttga tcacggtcac gttcggggcg ccgtggctga gcacatagat
     1141 tcgctggctg gcgggatcgc ccaggatgcc gtctggaccg ccctgcactt cgatgggctt
     1201 gaggctcacg agcgtcttgg cgttccacat ggccagcggc ttgctgctgg cgaatccgtg
     1261 ccccgacttg gcgtctaccg ccgccccgtg cccgctgacc ccggcgatct cgccgaccgg
     1321 ctccaggctg tccaggttga agaccgatac ccgcgccatg ggcccgctgc gcggaacata
     1381 gagtctgcgg ttggctgcgt cggcgtaaac atagtcgaac ccgccgtcgc cgcctgcctt
     1441 gacggttttc agcaccttat aggggcctgt ggaggcgggg ggctgcgccg aagccgccgc
     1501 agcgctcagg ccgatcgcaa gaacgcaggt cgccagcagg gttttcatcg catgtcctcc
     1561 atcgcccggc ttcgtttgag cgtccgggtg ttcgtcagcg gcaccttgcg tccagtcggc
     1621 gcctgacgcc accggcattc agacgtcccc cttctaaagt ctgcgccatc gattacggtc
     1681 caggcatgac tcaacgcacc tttgtcgcgg tcctggccgc cgccctcgct ctcgccgcgc
     1741 cagccttcgc tcaggcgccg ccgatcacgc cggacatccc ggcccagttc gaaaaaccca
     1801 cggcgcagaa tgactgggtc aagcgcaccg ccatgattcc catgcgcgac gggacccggc
     1861 tctacaccgt catcgtgatg atgaagggga ccagggacgc tccgatcctg ctcacgcgca
     1921 cgccctacaa cgccaagaag cgggctgagc ggttcgcctc gccgcacatc gtcgatgagc
     1981 tggcccagct ggacgagccc ttcgtcgccg acggctatat ccgcgtctac caggacatcc
     2041 gcggcaagta cggctcggag ggggactacg tggtcacccg cccgctgatc ggcccgctca
     2101 accacaccac cgtcgaccac gcgacggaca cctgggacac catcgactgg ttggtgaaga
     2161 acattcccga gaccaatggc cgggtcggca tgatcggctc gtcctacgac ggcttcacca
     2221 cgctgatggg cctgatcaat ccacacccgg cgctgaaggc cgccgtgccg cagtcggcca
     2281 tggtcgacgg ctggatgggc gacgacttct tccactacgg cgcctttcgc accaccaacc
     2341 tggactacct cgcgggccaa atgaccgccc gcggcgaagg cgttgttgtt tctcgggaaa
     2401 gcttcgacga gtacaccaac ttcctgcgcg caggatccat cgacagctac gccagggccg
     2461 ccggcctcga ccagattccc tactatcgca agctgaccga gcacgccgcc tacgacgcct
     2521 tctggagcga gcaggcgctg gacaaggagc tggcccgcca gccgctcaag gtgcccacca
     2581 tgtgggtcgg cgcgctgtgg gaccaggagg acatgtgggg gacgatccac gcctacatgg
     2641 ccaccgagcc caaggacgcg aacaacgaca tgaactacct ggtgcttggc ccctggcggc
     2701 actctggcgt caactacgag cagcgccagc tcaatgccct gaagctgccc ggcgacaccg
     2761 ccaccgagtt ccgcatgaag gtgctgaagc ccttcctcga cgagcacctg aagaccaatg
     2821 gcccgaaggc ccataccccg ccggtgttca tcttccgcac cggggccatg gagtgggacc
     2881 gcttggccaa atggccgccg gcctgcgagg atggctgcgg ggccaagatg acgccgcttt
     2941 acctagagcc cgaccagcgc ctgggtttcg agaggctcgg cggccctgcg tcggcctatg
     3001 acgagtacgt ctccgatccc gccaagcccg tgccctacgt ccatcgcccg gtgcgctccg
     3061 acgacggcga ccagtggcgc tactggctga ccaccgacca gcggcacgtg gacggccgca
     3121 ccgacgtcct gacctacacc agcaatgtcc tgacctcccc ggtgcagatc tccggcgcac
     3181 ccatcgtcaa cctcttcgcc tccaccagcg gcaccgactc ggactgggtg gtgaagatca
     3241 tcgacgtcta cccggacacc gtgccgagcc aggtcgagct cggcggctac gagttgccca
     3301 tcgccatgga catcttccgc ggccgctacc gcgagagctt cgtgacgccc aaggcgatcc
     3361 cggccaacgt ggtggagaaa taccgcttcg tcatgccgac cgccaaccac gtcttcgagc
     3421 ccggccaccg gatcatggtg cagattcagt cgagctggtt cccgctttac gaccgcaacc
     3481 cgcagacctt cacgcccaac atcttcttcg ccaagcccgc cgactatcag aaggccaccc
     3541 agcgggtctt ccacggtggc gcccaggcga cgaacatcga gctgccggtg gtcgaggcgc
     3601 att
//
LOCUS       DATAJL010000024         1575 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_300,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000024 DATAJL010000000
VERSION     DATAJL010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1575
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..374
                     /gene="secE"
                     /locus_tag="VHN39_00375"
     CDS             69..374
                     /gene="secE"
                     /locus_tag="VHN39_00375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEX2814818.1"
                     /translation="MARKPGTNPSAIRNRAAKTAAIMASPSAAALAPPKKPFNIVQFF
                     REVRIEARKITWTTRRETWITSVMVAIMVVFAMIFFAIVDAGVSFSVNQILKLASGG"
     gene            384..956
                     /gene="nusG"
                     /locus_tag="VHN39_00380"
     CDS             384..956
                     /gene="nusG"
                     /locus_tag="VHN39_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003165489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEX2814819.1"
                     /translation="MSEAAETTAAPSNPRHKWYIVHAYSNFEKKVAESIREQAKTQGL
                     DECFSDILVPTEDVVEIRRGRKVNAERKFFPGYVLVKMELTDEAYHLIKNTPKVTGFL
                     GSGSKPMPVSEKEVARIIGAIEEGVERPKPTIQFEIGEQVRVTDGPFASFNGSVEQVD
                     EERARLRVTVSIFGRATPVELEYNQVEKTT"
     gene            1030..>1575
                     /locus_tag="VHN39_00385"
     CDS             1030..>1575
                     /locus_tag="VHN39_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814820.1"
                     /translation="MTVETAAVNGERERLLTAFRSGQGATDGLAAEAAEALRLSWPAG
                     QSIFEVAQDELLAELLQSFSIFPVWLEQAMTHRRMALLFSNPLEELAPLAASLAIQCH
                     LNEYAWDEDPAETERVDSLAANLAALTPHQVMVLACYRPLARLAGADALLARDWDGPV
                     RQVLHEQIATVREEAAIAAALP"
BASE COUNT          291 a          526 c          519 g          239 t
ORIGIN      
        1 cctatatatg tgagaatgag gggcgcggct ttcgctgccc ctgcagatga gagttcgaag
       61 aagccgacat ggccaggaaa ccgggcacca acccgtcagc aatccgcaat cgcgcggcca
      121 agaccgccgc gatcatggcg agtccttcgg cggcggcgct cgcgccgccg aaaaagccgt
      181 tcaacatcgt ccagttcttc cgcgaggtcc gcatcgaggc ccgcaagatc acctggacga
      241 cccgtcggga gacgtggatc acctcggtga tggtggccat catggtcgtc ttcgccatga
      301 tcttcttcgc gatcgtggat gccggcgtga gcttcagcgt caatcagatc ctcaagctgg
      361 cctccggggg ctaaggtaga gacatgtcag aagccgccga aaccaccgcc gccccgtcga
      421 acccgcgcca caagtggtac atcgtccacg cctactcgaa cttcgagaag aaggtggccg
      481 agtcgatccg cgaacaggcg aagacccaag ggttggacga gtgcttttcc gacatcctgg
      541 tgcccaccga ggacgtcgtt gagatccgcc ggggccgcaa ggtcaacgcc gaacgcaagt
      601 tcttcccggg ctatgtcctg gtgaagatgg aactcaccga cgaggcctac cacctcatca
      661 agaacacccc gaaggtgacg ggcttcctgg gctccggttc gaagccgatg ccggtctccg
      721 agaaggaagt ggcccgcatc atcggcgcca tcgaagaagg cgtcgagcgg cccaagccca
      781 ccatccagtt cgagatcggc gagcaggtcc gcgtcaccga cggtcccttc gccagcttca
      841 acggctcggt cgaacaggtc gacgaggaac gcgcccgcct gcgcgtcacc gtctcgatct
      901 tcggccgcgc gaccccggtc gagctggaat acaatcaggt cgaaaagacc acctgatccg
      961 tgacggtcgg ggccgtgatt gccgccgcgg gatcgacgcc ggcggcgggg cgcatgccaa
     1021 gggcggccca tgacggttga gacggcggcg gtgaacgggg aacgcgagcg cctgctgacg
     1081 gcgttccgga gcggccaggg cgccaccgac gggctggcgg cggaggccgc tgaggccctc
     1141 agactttcgt ggcccgcggg ccagtcgatc ttcgaggtcg cgcaagacga actgctcgcc
     1201 gaactcctgc agagcttctc catctttccg gtctggctcg agcaggcgat gacgcacagg
     1261 cgcatggcgc tgctcttctc gaacccgctc gaagaactgg cgccgctggc cgcgagcctg
     1321 gcgatccagt gccatctcaa tgagtacgcg tgggacgagg accctgcgga gaccgagcgc
     1381 gtcgatagcc tcgccgcgaa cctggcggcc ctgacacccc accaggtcat ggtgctcgcc
     1441 tgctaccggc cgctggcgcg gctggccggc gccgacgccc tgctggcccg cgactgggat
     1501 gggccagtgc ggcaggtgct gcacgagcag atcgccaccg tgcgggagga agcggccatc
     1561 gccgcggcgc tgccg
//
LOCUS       DATAJL010000025         2027 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_304,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000025 DATAJL010000000
VERSION     DATAJL010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /locus_tag="VHN39_00390"
     CDS             complement(<1..220)
                     /locus_tag="VHN39_00390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR/PupR family sigma factor regulator"
                     /protein_id="HEX2814821.1"
                     /translation="MSPPNSPSTRPLDEAVAWLVRVQSDTATADDWVELTAWLEASEA
                     HADAFADAEALSAEIGDNAGELAAAIPRP"
     gene            complement(315..809)
                     /locus_tag="VHN39_00395"
     CDS             complement(315..809)
                     /locus_tag="VHN39_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX2814822.1"
                     /translation="METYLARREDLVRYFRVRLRSDEAAEDLVQDIYVKITGIPPEGI
                     DNPSGFLFRLGSNLMLDQIKQRKRSGRRDAEWRGANTTSAGWEDISEASPADDVADAR
                     QRLARIIEVVKELPPPVQEAFRLHKLEGLTHTETAAAMNVSKSSVEKYMMTCLKRILA
                     RVGQ"
     gene            1068..1736
                     /locus_tag="VHN39_00400"
     CDS             1068..1736
                     /locus_tag="VHN39_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermostable hemolysin"
                     /protein_id="HEX2814823.1"
                     /translation="MTASDVLAIGPPRFVELHQADSLARTRAELFLEAEYARAFGGLI
                     RHHYPLLMTAVGHDGAVLAAVGFRPATKEPFFLEQYLDEPVEAAIARRLDEPVRRADV
                     VEIGNLASASPCASRFLFSALADHLEQLGATHAVATATRQLRRSFRRICFPVSPLGAA
                     EAARLTQAGADWGSYYSRDPQVVVGRIACALPALRAGVLAAEVLAARLAERAQAFAHS
                     QAAP"
     gene            1733..>2027
                     /locus_tag="VHN39_00405"
     CDS             1733..>2027
                     /locus_tag="VHN39_00405"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2814824.1"
                     /translation="MSRVLSAVASHALLDPERVALTDATRILTYGDLLGAVELVSAQL
                     SLLMSDGPASAPVAISGENSIAWVIVDLALVRLGHPSLPLPGFFTAEQRAHALT"
BASE COUNT          295 a          709 c          647 g          376 t
ORIGIN      
        1 tcggacgggg gatcgccgcg gcgagctcac cggcgttgtc gccgatctcc gcgctcaggg
       61 cctcggcgtc ggcgaaggcg tcggcatggg cttcggacgc ttccagccaa gccgtcaatt
      121 cgacccagtc gtcagccgtc gccgtgtcgg attgcacccg caccagccag gcgaccgcct
      181 cgtccagtgg acgcgtgctt gggctgttcg gcgggctcat tttgagcctc tcgggttgag
      241 gtcgcggacc atggctgccc caatgacgcc acaaagcgaa aagcgcctcc aatctatctt
      301 cgggaccctc gccctcattg cccaaccctt gccagaatcc gcttcaggca ggtcatcatg
      361 tacttctcga cactggactt tgagacattc atggccgcag ccgtctcggt gtgcgtcagc
      421 ccctccagct tgtgcaaccg gaaagcttcc tgaaccggcg gcggcaactc cttcaccact
      481 tcgatgatcc gggcgaggcg ctggcgcgca tccgccacgt cgtcggctgg cgaggcttcc
      541 gagatgtctt cccacccggc tgatgtcgtg ttcgcaccgc gccattcggc gtctcgccgc
      601 ccggagcgct tccgttgctt gatctggtcg agcatcaagt tggagcccag ccggaacagg
      661 aagcccgacg ggttgtcgat gccctccggc ggaatcccag tgatcttcac atagatgtcc
      721 tggaccaggt cctcggcggc ctcgtccgat cgcagacgca cacgaaagta tcggacgaga
      781 tcttctcggc gcgcgaggta ggtctccaac agcggatttt ggtcactgtc gtccaaaggg
      841 cctggaagct ccgcaggggc cggcgggccc gcaagcgctg aaggatcgaa ccggcgcggc
      901 ccggcgcacc ccatgccact tcgaaacaga ttgcgaaacc tgtgaggcgt tttccagggc
      961 gcgtcgtcgt tggccggtgg aaggcgtggg ggcgcttaat cgacgaggga catggccatg
     1021 ggacgcgtcg ttgatttcgg tctgacccag caggatgcgc ggtccgcatg accgcgtctg
     1081 acgtcctagc gatcgggccg cctcggttcg ttgagctaca tcaagccgat agcctagcgc
     1141 gaacccgcgc cgagctcttc ctggaggccg aatacgcccg tgccttcggt gggctcatcc
     1201 gccaccacta tccgttgctg atgacggccg tgggccatga cggggcggtc ctggctgcgg
     1261 tcgggttccg gccggcgacc aaagagcctt tctttctcga acagtacctc gacgagcctg
     1321 tggaggccgc gatcgcgcgc cggctggacg agccggtccg tcgtgcggac gttgtcgaga
     1381 tcggcaatct cgcctcggcc agcccctgcg cttcgcggtt cctgttttca gccctggctg
     1441 accacttgga gcagcttggc gcgacccacg cggtggcgac cgccacccgg caactgcgcc
     1501 gcagcttccg gcggatctgc ttccctgtgt cgcctcttgg ggcggcagag gcggcccggt
     1561 tgacgcaggc cggcgccgac tggggttcct actactcgcg cgacccgcag gtggtcgtcg
     1621 gccgtattgc ctgcgccttg ccggccctgc gcgccggggt cctggccgct gaggttctcg
     1681 ccgcccgttt ggccgaacgc gcccaggcgt tcgctcactc ccaggccgcg ccatgagccg
     1741 cgtcctcagc gccgtggcca gccacgcctt gctcgatcct gaacgcgtcg cgctcaccga
     1801 cgcgacccga atcctgacct acggtgacct gttgggcgcg gttgagctcg tctccgcgca
     1861 actcagcctc ctcatgtccg acggtccagc ttctgcgccg gtggcgatca gcggcgaaaa
     1921 cagcatcgcc tgggtcatag tggacctggc gctcgtccgg ctcggccacc cgagcctgcc
     1981 cctgccaggg ttcttcacgg cggagcagcg cgcccacgcc ctcaccg
//
LOCUS       DATAJL010000026         2496 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_311,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000026 DATAJL010000000
VERSION     DATAJL010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..447)
                     /gene="lepB"
                     /locus_tag="VHN39_00410"
     CDS             complement(<1..447)
                     /gene="lepB"
                     /locus_tag="VHN39_00410"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEX2814825.1"
                     /translation="MAEIVEIIKTVVYALGIALFLRVLFFQPYTIPSASMEPNLYEGD
                     YIIVSKWTYGYSKYSIPFAPPVMHGRVVEQKAHRGDIVVFALPHDPHVDYIKRIIGLP
                     GDRIQMTKGLLYLNGVQVPRVSKGTFREDSGYGFMHDVTRYQETLPG"
     gene            654..1541
                     /locus_tag="VHN39_00415"
     CDS             654..1541
                     /locus_tag="VHN39_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX2814826.1"
                     /translation="MSRDTLPPLHALLALAVIAVWGTNFVIMKFALGHLPPLTLAALR
                     FTFAAVPAVFFCRRPAGWGNLAAYGLAIGVGQFGCIYVAMNGHISPGLASLVIQVQAF
                     FTVGLAMALTGERVRGFQLVALALAALGLGWLMAHANAEVTPLGLGLTLAAALGWAGG
                     NIVARRAGRVNMVAYVVWSSLFAAPALLGLAFAFEGAPAIAAGIRGADAATWAAVFWQ
                     SLGNSLFGYAAWAWLLARHPAATISPLSLLVPVFGMGASAIVLHEALPGWKLIAAALV
                     LSGLALNTLWPMWRRRSLA"
     gene            1718..>2496
                     /locus_tag="VHN39_00420"
     CDS             1718..>2496
                     /locus_tag="VHN39_00420"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2814827.1"
                     /translation="MSLWRSTTALKTPAPGMLARAAALERKRDFPGALSAYEAALQAA
                     PDEPHVLASLAAFAGKIEMFDVAAKVWAQVVRLEPTRLDAIEGQARAWRELGAFDDAT
                     LLLREALLSHLGEARLWNSLGVTLTQAGRAAEAIAFLDEAVRLDRRYAAAVYNRGGAR
                     FDLGDLEGADADFQAALRLARKPGEIATIRFAAAALALARGDLTAGWEAYETRHSRHL
                     GSAVAFDSPGRRWSPGVALGGQHLLLIGEQGLGDEIMFGSI"
BASE COUNT          348 a          820 c          889 g          439 t
ORIGIN      
        1 gcccggaagg gtctcctggt agcgggtgac gtcgtgcatg aagccgtagc ccgaatcctc
       61 gcggaacgtg cccttgctga cgcgcggcac ctgcacgccg ttcaggtaga gcaggccctt
      121 ggtcatctgg atgcggtcgc ccggcaggcc gatgatccgc ttgatgtagt cgacgtgcgg
      181 gtcgtgcggc agggcgaaga ccacgatgtc gccgcggtgc gccttctgct ccaccacgcg
      241 gccatgcatc accggcgggg cgaaggggat ggagtacttc gaatagccgt aggtccattt
      301 cgagacgatg atgtagtcgc cctcatagag gttgggctcc atcgacgccg acgggatggt
      361 gtagggctgg aagaacagga cgcgcaggaa aagcgcgatc cccagggcgt agaccaccgt
      421 cttgatgatc tcgacgattt cggccatcgc gccggtcttt tcgggaggcg cggaagcctg
      481 ggcggtctcg ttcataaagg gtcctaagga agagcccgcc gtcgcggacg gggccgttgc
      541 tacgcgttgg atagcgctgg agcaagagtt acgcccgtga agatgagttc atgcgggcgc
      601 gcaagcttca ccatcaggat gacaaaccgt ccagcgccaa ccacataggg ccgatgtccc
      661 gcgacaccct gcccccgctt cacgccttgc tggcgctcgc cgtcatcgcg gtctggggca
      721 cgaatttcgt gatcatgaag ttcgcgctgg ggcatttgcc ccctctgacg ctggcggccc
      781 tgaggttcac cttcgcggcg gtcccggcgg tcttcttctg caggcggccg gcgggctggg
      841 gcaacctggc cgcctatggc ctcgcaatcg gggtcggcca gttcggctgc atctacgtcg
      901 ccatgaacgg ccacatctcg ccggggctcg cctcgctggt gatccaggtg caggcgttct
      961 tcaccgtggg cctggccatg gcgctgaccg gtgagcgcgt caggggcttc cagctcgtcg
     1021 cgctcgcgct ggcggcgctg ggcctgggct ggctgatggc ccacgccaat gccgaggtga
     1081 cgccactggg tctgggcctg accctggccg ccgccctggg ctgggccggc ggcaacatcg
     1141 tcgcccgccg ggcgggtcgg gtgaacatgg tggcctatgt ggtctggtcg agcctgttcg
     1201 cggcgcctgc cctgctgggc ctggcgttcg cgttcgaggg cgcgccggcg atcgccgcgg
     1261 ggatccgcgg cgcggacgcg gccacctggg cggcggtgtt ctggcagtcg ctcggcaaca
     1321 gcctgttcgg ctacgccgcc tgggcctggc tgctggcgcg gcatccggcg gcgacgatca
     1381 gcccactgtc gctgctggtt ccggtgttcg gcatgggcgc ctcggccatc gtgctgcacg
     1441 aggctctgcc cggatggaag ctgatcgccg cggccctggt gctaagcggc ctggcgctca
     1501 acaccttgtg gcccatgtgg cgacgccgga gcctggccta ggctcaaccg gccggggcgc
     1561 atgaagtctt cgttcattat gcgtctctta tgttccaagt tgaaacctgc ggccagcaag
     1621 ctgacctctt gccgccctac tgcacagcta aggacaagcg tgtgggaggg gcggccaaac
     1681 ccacctttcc tttccgtgtt gctgccggga gaactggatg tcgttgtggc gatccacgac
     1741 tgctctgaag acgcccgcgc cggggatgct ggcgcgggcc gcagcccttg agcgcaagcg
     1801 ggactttccc ggcgcccttt cggcctatga ggccgccctg caggcggcgc ccgacgagcc
     1861 ccacgtcctg gcgtcgctcg cggccttcgc gggcaagatc gagatgttcg acgtggcggc
     1921 caaggtgtgg gcgcaggtcg tgcggctgga gcccacgcgg ctcgacgcca tcgagggtca
     1981 ggcccgcgcc tggcgcgaac tgggtgcgtt cgacgacgcg accctgctgc tgcgcgaagc
     2041 cctgctcagc catctcgggg aagcccggct ctggaacagc cttggcgtca ccctgaccca
     2101 ggccggtcgg gcggcagagg cgatcgcctt cctggacgaa gccgtgcgcc tggacagacg
     2161 ctatgccgcg gcggtctaca atcgcggcgg ggcccgtttc gacctcgggg atctggaagg
     2221 ggcggacgcc gactttcagg ccgcgctgcg gctggccagg aagcctggcg agatcgccac
     2281 catccgcttc gccgcggcgg ccctggcgct ggcgcggggt gatctcaccg ccggctggga
     2341 agcctatgag acccgccact cgcgccatct gggcagcgcc gtcgccttcg acagtccagg
     2401 ccggcgctgg tcgccggggg tcgccctggg cggccagcac ctgctgttga tcggagaaca
     2461 gggcctgggc gacgagatca tgttcggctc gatcta
//
LOCUS       DATAJL010000027         4828 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26064,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000027 DATAJL010000000
VERSION     DATAJL010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4828
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26064"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VHN39_00425"
     CDS             complement(<1..252)
                     /locus_tag="VHN39_00425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814828.1"
                     /translation="MRTRLLAGAAAAAACMTPFAASAAQAGDGSVFPPNYTFGDGSKG
                     FKLVSRGGAIDPGVVVSFNPPGDGSDGLLIALLDPADPRL"
     gene            complement(398..1513)
                     /locus_tag="VHN39_00430"
     CDS             complement(398..1513)
                     /locus_tag="VHN39_00430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814829.1"
                     /translation="MAETYRSMRALERTASTSRVLNLAALAVKHADNPEHLAKPLFTS
                     PALNAAVILKHRLRSFEIGTVSTRNRTATKLIVPFERSDLSLGGRSLFVGDRGWMESL
                     QELAGVSHELGRDAGVLEALDELPSLDPFLLREHMKRRGFDVAETHFEISAGDLEMMQ
                     AFVGAEIGKLIDLAYNGRTANESNTARLVEALLSSRNDERLEPLRLTLRLEGESYREG
                     IFAWKGFLYYKWVLNSLWPKLREVLVELMKVKTVGPRDYEHESLVRALKVKLHDNIER
                     QVKSVADYLRVYDGVFQELTRDGNATAFRDFLLKSPEMLVALGEGTGVVSHIASFWRF
                     RFPKNKPLEANVGELLDILQDFEAGLSGDAPATLAAA"
     gene            complement(1675..2406)
                     /locus_tag="VHN39_00435"
     CDS             complement(1675..2406)
                     /locus_tag="VHN39_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HEX2814830.1"
                     /translation="MKTLAVMSRKGGAGKTTVAVNLTLAARAMGVKAVLADADPLRSA
                     CEVLRERDEAASLLFETSASKLFALTEACRRGGVELLIIDTPAAPEADVAEAVKVADL
                     CLAVSRPTYLDLAAAVRSVAIIQRLGAKGTIVLNQCAAPRNGVEPPSVVKAFEALRFA
                     GLPVTPIALRSRLIYQTAFAQGRSVLEIDQTGAASAEVRELFAHVWRSITGEARAPVR
                     SANDDLRRLAPRSGARAGGLTFVNA"
     gene            complement(2539..2799)
                     /locus_tag="VHN39_00440"
     CDS             complement(2539..2799)
                     /locus_tag="VHN39_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814831.1"
                     /translation="MFAATILLADTTPAAATAATTVSPATVTATPAAKTEKPRLICKT
                     EAVTGSLFPKKTCYTSDDMAQRKQEERANLERMQNQIGLQVH"
     gene            complement(2888..3670)
                     /locus_tag="VHN39_00445"
     CDS             complement(2888..3670)
                     /locus_tag="VHN39_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEX2814832.1"
                     /translation="MASEENGKVTAAVLIIGDEILSGRTQDTNLRDIAKYLAVHGVDL
                     AEARTVPDVHEEIIAALDALRARYDYVITTGGIGPTHDDITADAVAAAFGVELYEHPE
                     IIELIEARVRSRPGAVMNAAMRRMARVPVGGELVRNPVSGPPGFTIGNVFVLAGVPSI
                     MRGMLEDVGPRLRGGAVTVSRTVRVEGSGESVIAAPLEAVAKAHPEMSLGSYPFFDGT
                     VYGSNLVLRGRDAEELGATVAELIAALQAEGVASVREIDAAI"
     gene            3725..4126
                     /locus_tag="VHN39_00450"
     CDS             3725..4126
                     /locus_tag="VHN39_00450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814833.1"
                     /translation="MRLPQLLLAAALVGCVAAPAAYAAPKTPYHRAVDPFVAELNRQC
                     PGRDLQDLSAGDLELIMEGFEDRLTLAQRHKVEDAVGYRCARIEAGLTCGNTASLDAF
                     RRLGVLPRFVAEACATPWTCRAFADCAQPKP"
     gene            4126..>4828
                     /gene="sfsA"
                     /locus_tag="VHN39_00455"
     CDS             4126..>4828
                     /gene="sfsA"
                     /locus_tag="VHN39_00455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004624326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000023 - maltose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HEX2814834.1"
                     /translation="MDFPSPLARGTLVSRYKRFFADVALDDGTEITAHCPNPGAMLGL
                     NTPGLRAYVSRSDNPKRKLAWTLELVEADGGLVGINTMHPNRLVAEALAADHFPELTG
                     YASHRREVKYGANSRVDFLLEAPGRPPCWLEVKNCHLRRSGTLAEFPDCVAARSLKHL
                     KELTAKVEAGERAVMLFVIQRMDCDAFSACAELDPAYARGLTEAAAHGVEVLAYACEI
                     TTEAVRMAHPIPWVGA"
BASE COUNT          758 a         1768 c         1558 g          744 t
ORIGIN      
        1 cagcctggga tcggccggat cgagcagcgc gatcaatagg ccatcggagc cgtcgcccgg
       61 cgggttgaag ctcactacga cacccgggtc gatcgcgccc ccgcggctca ccagcttgaa
      121 gcccttggag ccgtcgccga aggtgtagtt cggcggaaac accgatccgt cgccggcctg
      181 ggccgcgctg gcggcgaacg gcgtcatgca ggccgcggcc gcagccgcgc cagccagaag
      241 tctcgtgcgc attccgaaca ttcgctaagc cctcaaccat tggacgaagc ggtaaaaaag
      301 cgcctctcgc ggccgaccgc aatcgacctc gcatctgagg tgtttccctc gcatctgagg
      361 tgtgttttgc gcgccgcagg acgcgccgcg gcctgatcta ggctgcggcc aaggtcgcgg
      421 gcgcgtcgcc gctgaggccg gcctcaaaat cctgcaggat gtccagcagc tcgccgacat
      481 tggcctccag cggcttgttc ttcgggaacc ggaaccgcca gaaggaagcg atgtggctga
      541 ccacgccggt cccctcgccc agcgccacca gcatctccgg cgacttcagc aggaagtcgc
      601 ggaaggccgt ggcgttgcca tcgcgggtca gttcctggaa caccccgtca tagacccgca
      661 ggtagtcggc caccgacttc acctgccgct cgatattgtc gtgcagcttg accttcaggg
      721 cgcggaccag ggactcgtgc tcgtagtcgc gcggccccac ggtcttgacc ttcatcagct
      781 cgaccagcac ctcgcgcagc ttcggccaca ggctgttgag cacccatttg taatagagga
      841 agcccttcca cgcgaagatg ccctcgcgat agctttcgcc ctccaggcgc agcgtcaggc
      901 gcaggggctc cagcctctcg tcgttgcggc tggacagcag ggcttcgacc aagcgggcgg
      961 tgttggactc gttggccgtg cggccattgt aagccaggtc gatcagcttg ccgatctcgg
     1021 cgcccacgaa ggcctgcatc atctccaggt cgccagccga gatctcgaag tgcgtctcgg
     1081 ccacgtcgaa gccccgccgc ttcatgtgct cgcgcaacag gaagggatcc agcgacggca
     1141 gctcgtccag cgcctccagg acgcccgcgt cgcgacccag ctcgtggctc acgccggcca
     1201 gctcctgcag gctctccatc cagccacggt cgccgacgaa cagcgagcgg ccgccgaggc
     1261 tcaggtccga gcgctcgaag ggcacgatca gcttggtggc cgtgcgattg cgggtggaca
     1321 ccgtgccgat ctcgaaggac cgcaggcggt gcttcagaat caccgcggcg ttcagcgccg
     1381 gcgatgtgaa cagcggcttg gccaggtgct cgggattatc cgcgtgcttg accgccagcg
     1441 ccgccaggtt gagcacacgg ctggtggacg ccgtgcgctc cagggctcgc atgctgcgat
     1501 aggtttcggc caagacggtc gccccccggg gcgctgaaga cagtagcttg aggaactcag
     1561 tccccaggag tgtccctcgc aatgacgaaa agacaattaa tccgcgtcac aggtgctctg
     1621 aacaattgat gggtaacgtc ccagtcagcc gcgggaaggg cagccgcgag aacgtcaggc
     1681 gttgacgaag gtcaggccgc cggcgcgggc tccggaccgg ggcgcgaggc gccgcaggtc
     1741 gtcgttggcg ctgcgcacgg gggcgcgggc ctcgccggtg atgctcctcc agacgtgggc
     1801 gaaaagctcg cgcacctcgg cggaggccgc gccggtctgg tcgatttcca gcaccgaacg
     1861 gccctgcgcg aaggccgtct ggtagatcag ccgtgagcgg agcgcgatcg gggtcaccgg
     1921 caggccggcg aaccgcaggg cctcgaaggc cttcaccacc gacggcggct caaccccgtt
     1981 tcgcggcgcg gcgcactggt tgagcacgat cgtccccttg gcccccagcc gctggatgat
     2041 cgccaccgag cgcaccgcgg cggccaggtc cagataggtc gggcgcgaga ccgccaggca
     2101 gaggtccgcg accttcaccg cctcggccac gtcggcctcc ggcgccgccg gggtgtcgat
     2161 gatcagcagt tccaccccgc cccgccggca ggcttcagta agcgcgaaaa gcttcgacgc
     2221 gctggtttcg aagagcaggc tcgcggcctc gtcgcgctcg cgcagcacct cgcaggccga
     2281 gcgcagcgga tcggcgtcgg cgagcaccgc cttcacgccc atggcgcgcg cggccagcgt
     2341 cagattgacc gcgaccgtgg tcttgcccgc cccgcccttg cgggacatca ccgccagtgt
     2401 cttcacccaa ggccacccat tcaggccgca agcgctcacc cccgaacgct ctagcgcgcg
     2461 aagtaatgca cagacttatc cacagggcaa agtgactcta ccgcgacagt ggatcgcggg
     2521 ctggcggtgg agtccggtct agtggacctg caggccgatc tggttctgca tgcgctcaag
     2581 gttcgcgcgc tcttcctgct tgcgctgagc catgtcgtcg ctggtgtagc aggtcttctt
     2641 cgggaacagg ctgccggtca ccgcctcggt cttgcagatc agccggggct tttccgtctt
     2701 ggcggcaggt gtcgcggtga cggtggccgg gctgacggtg gtggctgcgg tcgccgcggc
     2761 cggggtggtg tcggccaaca ggatagtggc cgcgaacatc gcactgagga tcacaagggc
     2821 gctccaggat aacaggtcat atgaacgcca taacggaccc gggccgcgat gacaaacgcc
     2881 gcgcgcctca gatggccgcg tctatttccc gcacgctcgc cacgccctcg gcctgcagcg
     2941 cggcgatcag ttcggcgacg gtggcgccca attcttcggc atcgcggccg cgcagcacca
     3001 ggttcgagcc atagacggtc ccgtcgaaga acggatagct gcccagcgac atctccgggt
     3061 gcgccttggc caccgcctcc agtggcgcgg cgatcacgct ctcgccggag ccctccaccc
     3121 gcaccgtgcg cgacaccgtc accgccccgc cgcgcagcct gggccccacg tcctccagca
     3181 tgccacgcat gatcgagggc acgcccgcca gcacgaagac gttgccgatg gtgaagccgg
     3241 gcggcccgga caccggattg cgcaccagct cgccgcccac cggcacgcgg gccatccgcc
     3301 gcatcgccgc gttcatcacc gcgccgggcc gcgaccggac ccgcgcctcg atcagttcga
     3361 tgatctccgg atgctcgtag agttcaacgc cgaacgcggc ggccacggcg tcggccgtga
     3421 tgtcgtcgtg cgtcggcccg atcccgccgg tggtgatcac gtagtcgtaa cgggcgcgca
     3481 gcgcgtcgag cgcggcgatg atctcctcat gcacgtccgg caccgtccgc gcctcggcca
     3541 ggtcgacgcc gtgcacggcc aggtatttgg cgatgtcgcg cagattggtg tcctgcgtcc
     3601 gccccgacag gatctcgtcg ccgatgatca gcaccgcggc ggtgaccttt ccgttctcct
     3661 cgctcgccat ccgcccaccc ctcgcctaca tccttgacct gtcgcccccg gactagcccc
     3721 gcccatgcgc cttccgcaac tgttgctcgc cgccgccctc gtcggctgtg tggccgcgcc
     3781 cgccgcatac gccgcgccga agacgcccta ccaccgcgcc gtggacccct tcgtcgccga
     3841 gctgaaccgc cagtgcccgg gccgcgacct ccaggacctc tccgccggcg acctcgaact
     3901 gatcatggaa ggcttcgagg accgcctgac gctggcccaa cgccacaagg tcgaggacgc
     3961 cgtgggctac cgctgcgccc ggatcgaggc cggcctcacc tgcggaaaca ccgcctcgct
     4021 ggacgccttc cgccggctgg gcgtcctgcc ccgcttcgtg gctgaggcct gcgcgacccc
     4081 ctggacctgc cgcgccttcg ccgactgcgc ccagccaaag ccctgatgga cttcccctcg
     4141 ccgctcgccc gcgggaccct ggtcagccgc tacaagcgct tcttcgccga cgtggcgctg
     4201 gatgacggga ccgagatcac cgctcactgc ccgaaccccg gcgccatgct gggcctaaac
     4261 acgccgggcc tccgggctta cgtctcccgc tccgacaatc ccaagcgcaa gctcgcctgg
     4321 accctggagc tggtggaggc cgacgggggc ctggtcggca tcaacaccat gcaccccaac
     4381 cgcctggtcg ccgaggcgct ggccgccgac cacttccccg agctcaccgg ctacgcgagc
     4441 caccgccgcg aggtgaaata cggggccaac tcccgcgtgg atttcctcct cgaagcgccc
     4501 ggccggccgc cctgctggct ggaggtcaag aattgccacc tgcgccgctc agggaccctg
     4561 gccgaattcc ccgactgcgt cgccgcccgt tcgctgaagc acctgaagga gctcaccgcc
     4621 aaggtcgagg cgggcgagcg tgcggtcatg ctgttcgtga tccagcgcat ggactgcgac
     4681 gccttctccg cctgcgccga gctggacccc gcctacgcca ggggcctgac cgaagccgcc
     4741 gcgcacggcg tcgaggtgct ggcctacgcc tgcgagatca ctaccgaagc cgtgcggatg
     4801 gcgcacccga tcccctgggt cggcgcga
//
LOCUS       DATAJL010000028         5692 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_39054,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000028 DATAJL010000000
VERSION     DATAJL010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5692
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39054"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VHN39_00460"
     CDS             <1..192
                     /locus_tag="VHN39_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M28"
                     /protein_id="HEX2814835.1"
                     /translation="TPTEHALLHELAAQVSPEQQHATIAKLVSFGTRHTLSDTKSDTR
                     GIGAARRWVASQFQATSKD"
     gene            265..1335
                     /locus_tag="VHN39_00465"
     CDS             265..1335
                     /locus_tag="VHN39_00465"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2814836.1"
                     /translation="MDVLAIQRGTTDPGRVIVISGHMDSRVTDPQNFTSDAPGANDDA
                     SGSAAVIEAARVLSKHKFPATLVFAVLSGEEQGLYGGHVLADYATKQGWRVEADLNND
                     IVGNSEGINGVRETTRVRVFSEGTKTVETAAEADKRRYNGGEVDSPSRQIARYMDGVA
                     GAYLGNFKVTMVYRTDRFARGGDQVEMLKAGFPSVRVTEANENYTRQHQDLRTEGGLR
                     YGDVIEGVDFAYLANVTRVNVITMASMAMAPAPPTHVDIAGAVSADTTVKWQPAADAA
                     RYRLSWRATTDPQWRYGRMVGPSGQSVLKDVNIDDWFFGVSAIGPDGWESPVVFPGPP
                     GSWTHEEAPPAAAAPGTPGSRP"
     gene            1343..1636
                     /locus_tag="VHN39_00470"
     CDS             1343..1636
                     /locus_tag="VHN39_00470"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HEX2814837.1"
                     /translation="MLIVTGSVTARPDSFEALRRAALDHVMRSRTEPGCVTHSVHIDA
                     ENPLRLFFYEEWADRAALDVHFAQEGSAAFMRAVRELSASSTRVRILPVEDRP"
     gene            complement(1714..1869)
                     /locus_tag="VHN39_00475"
     CDS             complement(1714..1869)
                     /locus_tag="VHN39_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814838.1"
                     /translation="MKLVTLTLAATLALALSASAASAGPHHRHHHMMHHHMMHHRMMH
                     HHHHHAP"
     gene            2030..2584
                     /locus_tag="VHN39_00480"
     CDS             2030..2584
                     /locus_tag="VHN39_00480"
                     /inference="COORDINATES: protein motif:HMM:NF028057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HEX2814839.1"
                     /translation="MACLRTTLSLAIASAALAAASGARAAAFDVVTSSPDMVTLVDPA
                     AVEAIGDGKVRRAWSVNVQRNLVSGGPQQPGYVRTQNDYDCQAWKIRWRGFSVYSRFG
                     DLVMHKDNDDPAWAPIEGNFEATASARIICDGRAAGSVYTASSIGQLVVTLMQAWDAA
                     APMPPLQPVEPIARTPAPKRRAKR"
     gene            2581..3045
                     /gene="rlmH"
                     /locus_tag="VHN39_00485"
     CDS             2581..3045
                     /gene="rlmH"
                     /locus_tag="VHN39_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEX2814840.1"
                     /translation="MKLSIVAIGKLARSPETELTKTYVERATNAGRALGLGPLEVIEV
                     ESRKPGKAAEALALRPHLADAHVIACDEHGTARPSRAFAEEIAMLRDRGVRRLVFLIG
                     GADGLAPELLAQANGKLAFGPQTWPHAMARAMLAEQVYRAVTILAGSPYHRD"
     gene            3064..3948
                     /locus_tag="VHN39_00490"
     CDS             3064..3948
                     /locus_tag="VHN39_00490"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEX2814841.1"
                     /translation="MKTALIKSGLVLPATLSALALGAVAVAATGERLARLNVEETELS
                     VEQTRNMGQLARLLSVLEQLKRDPPPALLVSPRDAKDAVRAAILVKAMTPGLQARASG
                     YAHEAGEMMRQRRLAAVESEALFTNESERAEAISPPILRGPSASLRGPAAPQGLPEEV
                     ITPPQSLSIPTPGPVLRRFGSALASGGRTNGMTFSAAGGARVASPGPGFVQYVGPVKG
                     WGVIVILRLAGGYHLVLAGLDKTSVSVGQSVAAGEAVGFMPDSRQSDGGKASRELYLE
                     VRNQGVPVDPGHWLNKAG"
     gene            4041..5426
                     /locus_tag="VHN39_00495"
     CDS             4041..5426
                     /locus_tag="VHN39_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEX2814842.1"
                     /translation="MKKYLLIGVSAFVLGAGSMAYVSQHAMAAATPKANTYRMLGLFG
                     DVLDIVERQYVTPVDDTKLIHAALDGMLTSLDPHSNYLDPAGFDDMRDQTRGEYGGLG
                     LEVTTEDGVVKIISPIDDTPAAKAGLKPGDYITSVNGESVLGLSVSDAVKQMRGKPGE
                     TVTLTIAREKSDPFDVKLVREIIKQKSATAKLDGDYGILRVSGFNEKTTDEAQAAFAE
                     IKAKNPHMKGLILDLRRNPGGLLDQAVGISDLFLEGGEIVSQRGRDPRDVERYNARPG
                     DMTNGLPMVVLIDPGTASAAEIVAGALQDRKRAAIVGLTSFGKGSVQTVIPLRGGMDG
                     ALKLTTARYYTPSGRSIQKTGIEPDLEVAATKDEAQEIANRAFGFSEASFKNALNADE
                     GKVRKAAHVPAEAPPEGYDAKKDFQLARAEDVLKYGSVAATPKIPAPTARLAAILSKS
                     KVAEVKAPTPK"
BASE COUNT          962 a         1969 c         1890 g          871 t
ORIGIN      
        1 acgcccaccg agcacgccct gctccacgag ctcgccgctc aggtgtcgcc ggagcagcag
       61 cacgccacca tcgccaagct cgtctcgttc ggcacgcgcc acaccctgtc cgacaccaag
      121 tccgacaccc gcggcatcgg cgccgcgcgg cgctgggtgg cctcgcagtt ccaggcgacc
      181 tcgaaggact gaggccgctg tctgacggta gagacgccct cggaggtttt caccggccgc
      241 cgcgtcccca atcccaccga ggtgatggac gtgctggcca tccagcgcgg gaccaccgac
      301 cccggccggg tgatcgtcat ctccggccat atggacagcc gggtgaccga cccgcagaac
      361 ttcacctccg atgcgccggg cgccaacgac gacgcctcag gctcggccgc ggtgatcgag
      421 gccgcccgcg tgctgtcgaa gcacaaattc cccgcgaccc tggttttcgc ggtgctctcc
      481 ggcgaggaac aggggctcta tggcggtcac gtgctggccg actacgccac caaacagggc
      541 tggcgtgtgg aggccgacct caacaacgac atcgtcggca attccgaggg gatcaacggg
      601 gtgcgcgaga ccacccgcgt ccgcgtcttc tccgagggca ccaagaccgt cgagaccgcc
      661 gcggaggcgg acaagaggcg ctacaacggc ggcgaggtgg actcaccctc gcgccagatc
      721 gcccgctaca tggacggcgt ggccggcgcc tatctgggca acttcaaggt caccatggtc
      781 taccgcaccg accgcttcgc ccgcggcggc gatcaggtgg agatgctgaa ggcgggcttc
      841 ccgtcggtgc gcgtcaccga ggccaacgag aactacaccc gccagcacca ggacctgcgc
      901 accgagggcg gcctcagata tggcgacgtg atcgaaggcg tcgacttcgc ctacctggcc
      961 aatgtcaccc gcgtgaacgt gatcaccatg gcgtccatgg ccatggcgcc ggccccgccg
     1021 acccatgtgg acatagccgg cgcggtctcg gccgacacga cggtgaagtg gcagccggcg
     1081 gcggatgcgg cgcgctatcg cctctcgtgg cgcgccacca ccgacccgca gtggcgctat
     1141 ggccgcatgg tcggacccag cggccagtcg gtgctgaagg acgtcaatat cgacgactgg
     1201 ttcttcggag tcagcgccat cggtcctgac gggtgggaga gtcccgtggt gttcccgggc
     1261 ccgccgggga gctggaccca cgaggaggcg ccgcccgcgg cggccgcgcc cggaactcca
     1321 gggtccaggc cctgacggcg tcatgttgat cgtcaccggt tcggtcaccg ccaggcccga
     1381 cagcttcgag gcgttgcggc gggccgcgct cgatcatgtg atgcgctcgc ggaccgaacc
     1441 gggctgcgtg acccacagcg tccacatcga cgccgagaat ccgctccggc tgttcttcta
     1501 tgaggaatgg gccgaccgcg cggcgctgga tgtccatttc gcgcaggaag gctcggcggc
     1561 cttcatgcgc gcggtccgcg agctttccgc cagcagcacg cgcgtgcgca tcctgccggt
     1621 ggaggaccgg ccctaggcgg tcggtcccct aatgccatca gtaggagcgg cgggccccgg
     1681 cgcccttccg ggcccgggac cgccggctat cttctagggc gcgtggtggt ggtggtggtg
     1741 catcatgcgg tgatgcatca tgtggtgatg catcatgtgg tgatggcggt ggtgcggacc
     1801 ggccgaggcc gcactggctg acagagccag cgcgagggtc gccgcgagcg tcagggtgac
     1861 gagtttcaag gtctctctcc caagttctga tgtgtccccc gaatcaggat tcggacacag
     1921 gcgaagcgta gcgtccagac aaatgccgaa aggttaccgc gagctgatcc ccggtaaccc
     1981 aagcttgacg ggatgggctt aaggacggcg tcggggtgga tgattattca tggcttgcct
     2041 gcgcacgacc ttgagtttgg cgatcgcctc ggccgccctg gccgcagcgt ctggggcgcg
     2101 cgccgcggcc ttcgatgtcg tcacgtccag ccccgacatg gtcaccctgg tcgatcccgc
     2161 ggccgtcgag gccatcggcg acggtaaggt gcggcgcgcc tggagcgtca acgtccagag
     2221 gaacctggtc tccggcggcc cgcagcagcc gggatatgtc cgcacccaga acgactacga
     2281 ctgccaggcc tggaagatcc gctggcgcgg attctcggtc tattcgcggt tcggcgacct
     2341 ggtcatgcac aaggacaatg acgatccggc ctgggccccc atcgagggca acttcgaggc
     2401 caccgccagc gcccgcatca tctgcgacgg ccgcgcggcc ggcagcgtct acaccgcgtc
     2461 ttcgatcggc cagctggtgg tcaccctgat gcaggcctgg gacgcggccg cgcccatgcc
     2521 gccgctgcaa cccgtagagc cgatcgccag gacgcctgcg cccaagcgcc gggccaagcg
     2581 ttgaagcttt ccatcgtcgc catcggcaag cttgcccgct cgccggagac ggagcttacg
     2641 aagacctatg tggagagggc caccaacgcc ggccgggcgc tgggcctggg gcccctcgaa
     2701 gtgatcgagg tggagagccg caagcccggc aaggcggccg aggcgctggc cctccggcct
     2761 cacctggccg acgcacacgt catcgcctgc gacgagcatg ggacggcccg gcccagccgc
     2821 gcctttgccg aggagatcgc catgctgcgc gaccgagggg tgcgcaggct ggtgttcctg
     2881 atcggcggcg ctgatgggct ggcgccggag ctgctcgccc aggccaacgg caagctggcg
     2941 ttcgggccgc agacctggcc gcacgccatg gcccgcgcca tgctggccga gcaggtctat
     3001 cgggccgtga ccatcctggc cggttcgccc tatcatcggg actaggtaag aatgggggga
     3061 ctgatgaaga ccgccctgat caagtctggc ctcgtcctcc ccgcgacgct cagcgccctg
     3121 gcgctgggtg cggtcgccgt agccgccacc ggcgaacggc tggcgcggct gaacgtcgag
     3181 gagaccgagc tttccgtcga gcagacccgc aacatgggcc agctcgcgcg cctgctgtcg
     3241 gtcctggagc aactgaaacg cgatccgccg ccggccctgc tggtcagccc ccgggacgcc
     3301 aaggacgccg tgcgcgcggc catattggtc aaggccatga cgcccggcct gcaggcccgc
     3361 gcctccggct acgcccacga ggcaggcgag atgatgcgcc agcgccgcct ggcggccgtc
     3421 gagagcgagg cgctcttcac caacgagagc gagcgcgccg aggcgatctc gccgccgatc
     3481 ctgcgcggcc cctccgcttc gctgcgcggg ccggccgcgc ctcagggcct ccccgaagag
     3541 gtcatcaccc cgccgcaaag cctctctatc ccgaccccag gccccgtcct gcggcggttc
     3601 ggttcggcgc ttgcgagcgg cggccgcacc aacggcatga ccttttccgc cgccggcggg
     3661 gcccgggtcg cctctccggg cccgggattt gtgcaatatg tcggccccgt aaaaggctgg
     3721 ggcgtcatcg tgatattaag actggccggc ggataccatc tggtgcttgc tggcctggac
     3781 aagacctccg tctcggtcgg tcaatcggtc gcggcaggag aggctgtcgg ttttatgccc
     3841 gatagtcgac aatcggatgg tggaaaggcc tcgcgggaac tctacctcga ggtccgaaac
     3901 cagggtgttc cggtcgatcc ggggcactgg ctgaacaaag cgggctgagc gccctgaacc
     3961 agcgttcgta ggggcccatt ttatcacgcg gcgtcttcct tatgtctggg ggaccgcaag
     4021 ggagcctgcg acaggccatg atgaagaagt atctcctgat cggcgtttcg gccttcgtgc
     4081 tcggcgcggg ctccatggcc tacgtcagcc agcacgccat ggccgcggcc acgcccaagg
     4141 ccaacaccta ccggatgctg ggcctgttcg gcgacgtgct ggacatcgtg gaacgccagt
     4201 atgtgacccc tgtggacgac accaagctga tccatgccgc actggacggc atgctgacgt
     4261 cgctcgatcc ccattccaac tatctcgacc cggccggctt cgacgacatg cgcgaccaga
     4321 cgcgcggcga atatggcggc ctgggccttg aggtcaccac cgaggacggg gtggtcaaga
     4381 tcatctcgcc catcgacgac acacccgccg ccaaagccgg gctgaagccc ggcgactaca
     4441 tcacctcggt gaacggtgag agcgtgctgg gcctgtcggt ctccgacgcg gtcaagcaga
     4501 tgcgcggcaa acccggcgag acagtgacgc tgaccatcgc gcgcgaaaaa tccgacccct
     4561 tcgacgtgaa gctggtccgc gagatcatca agcagaagtc cgccaccgcg aaactggacg
     4621 gcgactacgg gatcctgcgg gtctccggct tcaacgagaa gaccaccgac gaggcccagg
     4681 ccgccttcgc cgagatcaag gccaagaacc cccacatgaa gggcctgatc ctggatctgc
     4741 gccgcaatcc cggtgggctg cttgaccagg ctgtcggcat ttccgacctg ttcctggaag
     4801 gcggcgagat cgtcagccag cgcggccgcg atccgcgcga cgtggaacgc tacaacgccc
     4861 gtccgggcga catgaccaat ggcctgccca tggtggtgct gatcgatccg ggcacggcgt
     4921 ccgccgccga gatcgtcgcc ggcgccctgc aggaccgcaa gcgcgccgcg atcgtcggcc
     4981 tcaccagctt cggcaagggc tccgtccaga cggtgatccc gctgcgcggc ggcatggacg
     5041 gcgcgctgaa actgaccacc gcgcgctatt acaccccctc tggccgctca atccagaaga
     5101 ccggcatcga gccggatctg gaagtggccg ccaccaagga cgaggcccag gagatcgcca
     5161 accgcgcttt cggcttctcg gaggcctcct tcaagaacgc gctcaacgcc gacgagggca
     5221 aggtccgcaa ggccgcccac gtgccggccg aggcgccgcc cgaaggctac gacgccaaga
     5281 aagacttcca actggcccgc gccgaggacg tcctgaagta tggctcggtg gccgcgacgc
     5341 cgaagattcc ggcgccgacc gcgcgtctgg cggccatcct gtcgaagtcc aaggtcgccg
     5401 aggtgaaggc gccgaccccg aaatagcgcg ccctctccca aaaaaacatt gggcggcaaa
     5461 ttcgcgcacc aggtgaagcc tgttggcttc atccttgcat cctttgctat aggggctgcg
     5521 tatcttgtgt gtagccctga aggggcaatg cgatgtcgaa gcgactattg atcggcgcaa
     5581 tggcgggact ggcggcgagc ctttcccttg cgaccgccgt gcgcgctgat gtggtcacgt
     5641 tcgacgaccg aaccttcgac cccgggacct accagaccga agccaatcag tt
//
LOCUS       DATAJL010000029         2724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64580,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000029 DATAJL010000000
VERSION     DATAJL010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2724
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64580"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VHN39_00500"
     CDS             <1..192
                     /locus_tag="VHN39_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814843.1"
                     /translation="LEFDDHYYLSPAHRRRGELLGGSPGSDPAEAAAAIAQAIAVAEA
                     QGAAGFAAEARSRLIEAVA"
     gene            203..2398
                     /locus_tag="VHN39_00505"
     CDS             203..2398
                     /locus_tag="VHN39_00505"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2814844.1"
                     /translation="MTSDEASPPAKVAIIGGGCAAITAAFELSRPELAGRYDITIYQM
                     GWRLGGKGASGRGPSGRIEEHGLHVWLGFYENAFKLLRECYAELATDPGAFDVADWRK
                     AFITEDTIGISVPSSAEAWHNWSACFPPREGLPGDPGTAAELLSIQRYISSALSMLVT
                     LIESTDSRRADLRKDEAAADWDAALLNASSLRGDPQRVLAAIGELIGGAVSASAAVIV
                     EALAVLQAGIETLPSPLANPLTDLAGWIARSLRNWLEASLVREPYFQHLWEVMDLVVA
                     SVTGILRFGLLTDPRGFDAIDDYDWREWLRLSGASERALQSAFIRGLYDLPMAYEDGD
                     PQRPSLSAAVSLRATLRMFFTYRGALYWRLRAGMGDVVFAPFYEVLRRRGVKFRFFHR
                     LTNVHLAPETGPAAGEAPHVAALEFDVQARIKPGAEYSPLISVADRPCWPSAPDFGQL
                     QDGERLADEGRDFESHWETRRVAARTLKVGKDFDFVVLGVSLGAVPHVCGEILARDAR
                     WRSMVENVKTIESQAFQVWLDQDLEALAWKGPNYIGSAFAKPFDTWCDMAHTIPEEGW
                     ADPPRTVLYFCGGLAQLPAEPGEVGDPGYPARRREVVRQNALIYLRQTARHLWPGAYD
                     AAGEFRWDMLRDASGDGGAIGAARFETQYWRANVNPSDRYVLSVPGSARHRISPLDMT
                     YDNMTIAGDWTACGLNQGCVEGAVISGRLAAAALAGTPRLEDIVGYDHP"
     gene            2438..>2724
                     /locus_tag="VHN39_00510"
     CDS             2438..>2724
                     /locus_tag="VHN39_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814845.1"
                     /translation="MSLDERRRRPPPLRMEPIRSVFPPAGDAPARPTAGVEAVREVSQ
                     ASDSAIGAAVRAAYDVVDQNVLEGRRAAERLRAAASPLAAPSPDPRSIANRL"
BASE COUNT          390 a          945 c          946 g          443 t
ORIGIN      
        1 ctcgagttcg acgaccacta ctacctgtct cccgcgcacc gtcgacgggg tgagcttctc
       61 ggcggcagcc cgggttccga tcccgcagag gccgcagcgg ccattgcgca ggcgatagca
      121 gtggccgagg cccagggcgc cgccggattc gcagccgagg cgcggtcgcg cctgatcgaa
      181 gccgtggcgt gacggctgcc cgatgacctc cgacgaagct tctcccccgg cgaaggtcgc
      241 catcatcggc ggcggatgcg cggcgatcac ggcggcattc gaactgtccc gccctgagct
      301 ggccggccgc tacgatatca cgatctacca gatgggatgg cgcctgggcg ggaaaggcgc
      361 ctccggccgc gggccgtccg gccgcatcga ggaacatggc ctgcacgtgt ggctcgggtt
      421 ctacgagaac gcgttcaagc tgctgcggga atgctacgcc gagctcgcca ctgacccagg
      481 cgccttcgac gtcgcggact ggcgcaaggc cttcatcacc gaagacacca tcggcatttc
      541 ggtcccgtcg tccgccgagg cctggcacaa ctggtcggcc tgctttcccc cacgcgaggg
      601 tctgccgggc gatccgggga ctgcggcgga gttgctgtcg atccagcgct acatctcgag
      661 cgcgctgtcc atgctcgtca cgctcatcga gagcaccgac tcccgccgcg ccgacttgag
      721 aaaggacgag gcggccgcgg actgggacgc cgcgttgctc aacgcctcct cgctgcgcgg
      781 ggacccccag cgggtgctgg cggccatcgg cgaactgatc ggcggagccg tttcggcgtc
      841 ggcggcggtg atcgtggagg ccctggcggt gctccaggcg ggaatcgaga cccttccatc
      901 cccgctggcc aatccgctga cggatctcgc cgggtggatt gcccgcagcc tgcgcaactg
      961 gcttgaggcc agcctcgtgc gcgagcccta cttccagcac ctctgggagg tcatggatct
     1021 ggtggtcgcg tccgtgacgg ggatcctgcg gttcgggctg ctgaccgatc cgcgcggctt
     1081 cgacgcgatc gacgactatg actggcgaga gtggctgcgg ctcagcggcg cgtctgagcg
     1141 ggcgctgcag tcagccttca tccgtgggct gtacgacctg ccgatggcct atgaggacgg
     1201 tgatccgcag cgcccgagcc tctcggccgc ggtctcgctg cgtgcgacgc tgcggatgtt
     1261 cttcacctat cgcggcgccc tctactggcg gcttcgggcg gggatgggcg acgtggtctt
     1321 cgccccgttc tatgaggtgc tgcggcgccg cggcgtgaaa ttccgcttct ttcaccgcct
     1381 caccaatgtc caccttgcgc cggagacagg gcctgcggcc ggcgaagcgc cccacgtcgc
     1441 ggcgctggaa ttcgatgtcc aggcgcggat caagcccggc gcggaatatt cgccgctgat
     1501 ctcggtggcc gaccggccgt gctggccctc ggcgccggat ttcggccagt tgcaggatgg
     1561 ggagcgactg gcggacgagg gccgggattt cgaatctcat tgggagaccc gtcgggtcgc
     1621 cgccaggacc ctgaaggttg gcaaggattt cgacttcgtc gtgctcgggg tcagcctcgg
     1681 cgcggtgccg catgtgtgcg gggagatcct ggcgcgcgac gcccgctggc gtagcatggt
     1741 cgagaacgtg aagaccattg agagccaggc gttccaggtg tggctggacc aggacctcga
     1801 agccctcgcc tggaaggggc caaactacat cggctcggcc ttcgccaagc ccttcgacac
     1861 ctggtgcgac atggcccaca ccatcccgga agagggatgg gccgacccgc cgagaacggt
     1921 gctctacttc tgcggcgggc tggcacagct gccggccgaa ccgggcgagg tgggagatcc
     1981 cggctatccg gcgcggcgcc gcgaggtcgt gcgccagaat gcgctgatct acctgcgcca
     2041 gaccgcgcgc catctctggc ccggagccta tgatgcggcc ggcgagttcc ggtgggacat
     2101 gctgcgcgat gcgtccggag acggcggcgc catcggcgcc gcccgctttg agacccagta
     2161 ctggcgcgcg aacgtcaatc cttcggaccg ctacgtgctg tcggtccccg gcagcgcgcg
     2221 ccaccgtatc tcgcccttgg atatgaccta cgataacatg accatcgcgg gcgactggac
     2281 ggcctgcggg ctgaaccagg gttgcgtcga gggggctgtg atctcgggac gattggcggc
     2341 cgcggccctg gccggaaccc cacgcctgga ggacatcgtt ggctatgacc atccctagcc
     2401 tcatcgcgag gatcgcctgc gccatggagc gtccctgatg tcattggacg agcgccgccg
     2461 gcggccgccg ccccttcgga tggaaccgat ccggtccgtc ttcccgcctg caggcgacgc
     2521 cccggccagg ccgaccgccg gcgtcgaggc ggtccgtgaa gtgtcccagg ccagcgacag
     2581 cgccatcggc gcggccgtcc gcgcggccta cgacgtcgtt gatcagaacg tcctggaggg
     2641 ccgccgcgcc gccgaacgac tgcgcgccgc cgcctcgccg ctcgccgcgc cgtcgccgga
     2701 ccctcgctcc atcgccaacc gcct
//
LOCUS       DATAJL010000030         2439 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_77779,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000030 DATAJL010000000
VERSION     DATAJL010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77779"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /gene="fliI"
                     /locus_tag="VHN39_00515"
     CDS             complement(<1..455)
                     /gene="fliI"
                     /locus_tag="VHN39_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518508.1"
                     /note="involved in type III protein export during
                     flagellum assembly; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-specific ATP synthase FliI"
                     /protein_id="HEX2814846.1"
                     /translation="MKSLVAAVERLDPLTVSGRVAAVNGLLIEARGGLTRLSVGARAE
                     IIRFGEKPLSAEVVGFRDTRALLMPFGPVEGVAPGAEIRIEPLGSAVRPTKAWLGRVI
                     DAFGNPVDGKGPLPQGAAAYPLRAAPPSAHARARVGERLDLGVRAMNVFA"
     gene            complement(516..1325)
                     /locus_tag="VHN39_00520"
     CDS             complement(516..1325)
                     /locus_tag="VHN39_00520"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2814847.1"
                     /translation="MRARFKPLAGQVIVVTGAGSGLGLEVARLAAKAGAAVVLSAGDE
                     QAVRAACEEIGKAGGRCHPVAADAATTEGCDRVARAAMARFGRIDSWIEAAAGEAELV
                     HAAKALVSHIGSGEARGALVAFGQQIGKAARAELKVAKGRVAATLVKLPKDWRRNSPT
                     GTAAQAALHALTRPMGEMAVAAKGTSLTAVTQAKKHPGVVVGVGLLALVGVAVWFGRG
                     RIVQAAVATRPRVARAVRPSLLSMVKRRPLTAARLAAKYPRATVKLATALR"
     gene            1691..2386
                     /locus_tag="VHN39_00525"
     CDS             1691..2386
                     /locus_tag="VHN39_00525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2814848.1"
                     /translation="MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYD
                     YDLILLDLNLPDMSGMDVLRTLRVGKINTPIMILSGSAEIDTKVKTFSGGADDYMTKP
                     FHKDELVARIHAVVRRSKGHAQSVIKTGDILVNLDAKTVEVNGLRVHLTGKEYQMLEL
                     LSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLAAAANGKHHIETVWGRG
                     YVLRDPQEAMIAA"
BASE COUNT          437 a          839 c          798 g          365 t
ORIGIN      
        1 gcgaagacgt tcatggcccg cacgcccagg tccagtcgct cgccgacccg ggcgcgggcg
       61 tgggcggacg gcggggcggc gcgcagggga taggccgccg cgccttgcgg cagcgggccc
      121 ttgccgtcga caggattgcc aaaggcgtcg atcacccggc cgagccaggc cttggtcggg
      181 cgcacggccg aacccagggg ctcgatgcgg atttcagcgc cgggagccac gccttcgacg
      241 gggccgaagg gcatcagcag cgcgcgggtg tcacggaagc ccaccacctc ggccgacagc
      301 ggtttttcgc cgaagcggat gatctcggcg cgggcgccga ccgacagccg ggtcagcccg
      361 ccccgggcct cgatcaggag gccgttcacg gcggccacgc ggccggacac agttagggga
      421 tccagccgct cgaccgcggc tacaagactc ttcaagaaca gccctcgact tctgggccgt
      481 agaatcaagc catcgcgctt aaggggtggt gaagatcagc ggagagccgt ggccaatttc
      541 acggtggcgc gcggatattt cgccgccagc ctggccgccg taagcggccg gcgcttcacc
      601 atgctcagca aggaaggccg aacggcgcgg gcgactcgcg gccgcgtggc gacggcggcc
      661 tggacgatgc ggccgcgccc gaaccagacc gccacgccga ccaacgccag caaacctacg
      721 ccaaccacga cccccgggtg cttcttggcc tgggtgacgg cggtcaggct cgtgcccttg
      781 gcggccaccg ccatctcgcc cattggcctg gtcaaggcgt gcagcgccgc ctgggcggcc
      841 gtccccgtcg ggctgttgcg gcgccagtcc ttcggcagct tcaccagcgt cgcggccacg
      901 cggcccttgg cgaccttcag ttcggcccgc gcggccttgc cgatctgctg gccgaaggcg
      961 accagggcgc cgcgcgcctc gccagagccg atgtggctca ccagggcctt ggcggcatgg
     1021 acgagctccg cctcccccgc cgcggcctcg atccagctat cgatccgtcc gaaccgcgcc
     1081 atggccgcgc gcgccacgcg gtcgcaccct tcggtggtgg cggcgtcggc ggccaccgga
     1141 tggcaccgcc caccggcctt gccgatctcc tcgcaggcgg cgcgcaccgc ctgttcgtcg
     1201 ccggccgaca gcaccaccgc cgcgccggcc ttggccgcca gccgggccac ctccaggccc
     1261 aggccggagc ccgcacctgt aacgacgatc acctgccctg caaggggttt gaacctggcg
     1321 cgcataaatc ctcccgatcg gcctactctc cgaaatctgg ggatcaaacg gttgggatcc
     1381 aaggcccgtt ccgccgcctg gtgtgatgga tttgaagttc gccgcagcca gggcgaagcg
     1441 cagagcgaac ttcgaaatcg ggacgctagc gtttcggcca gattgtccaa tcacgaaaga
     1501 ttcaacagcc ctgcgactcc gcgacggggg tgcgactctt gtggcggatt ccgcatcgga
     1561 ttaacgattc ggcttgggcg gacactcccg attaaccagt cttaaattaa ctcggcggca
     1621 ggttaacggc gaggtccggg cggattccgg gaattcgcgg ggacatgcgg caacgcagta
     1681 ggagagacag atgcgggtac tgttgatcga ggacgacagc gccacggctc aaagcatcga
     1741 actgatgctg aagtcggagg ggttcaacgt ctatacgacc gacctgggtg aggaaggcgt
     1801 cgatctgggc aagatctatg actacgatct gatcctgctc gacctcaacc tgccggacat
     1861 gagcggcatg gacgtgctgc gcacgctgcg ggtcggcaaa atcaacacgc cgatcatgat
     1921 cctgtcgggc tcggccgaga tcgacaccaa ggtgaagacc ttctccggcg gcgccgacga
     1981 ctacatgacc aagccgttcc acaaagacga gctggtggcg cgcatccacg ccgtggtccg
     2041 ccgctccaag ggtcacgccc aatcggtcat caagaccggc gacattctcg tgaacctcga
     2101 cgccaagacc gtcgaagtga acggcctgcg ggtccacctg accggcaagg aataccagat
     2161 gctggagctg ctctcgctgc gcaagggcac cacgctcacc aaggaaatgt tcctcaacca
     2221 cctttacggc ggcatggacg agccggagct gaagatcatc gacgtcttca tctgcaagct
     2281 gcgcaagaag ctggccgcgg ccgctaacgg caagcaccac atcgaaaccg tctggggccg
     2341 cggctacgta ctgcgcgacc cgcaggaagc gatgatcgcg gcttagggtt tcattcccct
     2401 gtcgaccgtc atcaccgggc cccgggtcgc gcagtacgt
//
LOCUS       DATAJL010000031         2093 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13308,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000031 DATAJL010000000
VERSION     DATAJL010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2093
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13308"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..802
                     /gene="alc"
                     /locus_tag="VHN39_00530"
     CDS             <1..802
                     /gene="alc"
                     /locus_tag="VHN39_00530"
                     /EC_number="3.5.3.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR02961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004037 - allantoicase activity [Evidence
                     IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="allantoicase"
                     /protein_id="HEX2814849.1"
                     /translation="RKRVPGHDWCVIRLGVGGIISGFEIDTRHFTGNYPPACELEVCR
                     SEEAAPGDDARWVKVTDRVDLKGDDRIYVPIQYGPVTHVRLHIFPDGGVARLRAWGRV
                     LPDWTHHPAGEVLDLLALAHGGRGIIANNEHYGAVANLTAPGRGLNMGDGWETRRRRE
                     AGHDWAILELGADGVIEEVVVDTAHFKGNYPDRCSIQAVAKSDGSPQEMATAAVAWPF
                     LLSECKLSADAVHTFREEVRKVGPVRFIRFNIYPDGGVSRLRMMGTLA"
     gene            974..1546
                     /locus_tag="VHN39_00535"
     CDS             974..1546
                     /locus_tag="VHN39_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814850.1"
                     /translation="MRPFEFIIVFLSFIYTLGLTHLLFAATRMVRHRRALIFSWPHAI
                     WMFAILLLLVANWISLWDFHALPQMSLWTIVTGVVLSVMQYFICALVSPDFEDGESYN
                     MRAFHEREGRTYVGAVLAMLVLSLITNYAAGAKLGVQNWADQNSLVIAMAPPALLAFF
                     VRAHWAQLVGPILTAGLLVATLGVYYPVLR"
     gene            complement(1710..>2093)
                     /locus_tag="VHN39_00540"
     CDS             complement(1710..>2093)
                     /locus_tag="VHN39_00540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814851.1"
                     /translation="GADRMIHDAARSATGAPRPVFAVIGHHLVSGELRPSEPLMALVD
                     ARQPTFSCAPSQRGAEIVLSCSDGSSAQLKLDESGCGRSLSGERASLCIGFTPKYAVR
                     RLTAPAGETLRINGERLVLEPVAGD"
BASE COUNT          325 a          702 c          696 g          370 t
ORIGIN      
        1 gcgcaaacgc gtccccggtc acgactggtg cgtgatccgg ctgggcgtcg ggggcatcat
       61 ctccggcttc gagatcgaca cccggcactt caccggcaac tacccgccgg cctgcgagct
      121 ggaggtctgc cgctcggagg aggccgcgcc cggcgacgac gccaggtggg tgaaggtcac
      181 cgaccgggtc gacctgaagg gcgacgaccg catctatgtg ccgatccagt acggaccggt
      241 gacccatgtg cggctgcaca tctttcccga cggcggggtg gcgcggctca gggcctgggg
      301 ccgggtgctg ccggactgga cgcatcatcc ggccggcgag gtgctggacc tgctggccct
      361 ggcccatggc ggccgcggga tcatcgccaa caacgagcac tatggcgcgg tggccaacct
      421 gaccgcaccc ggccgcgggt tgaacatggg cgacggctgg gagacgcggc ggcggcgcga
      481 ggccggccac gactgggcga tcctcgagct gggggcggac ggggtgatcg aggaggtcgt
      541 cgtcgacacc gctcacttca agggcaacta tcccgaccgc tgctcgatcc aggccgtggc
      601 caagtccgac ggctcgccgc aggagatggc gaccgccgcg gtggcctggc cgttcctgct
      661 tagcgaatgc aagctgtcgg ccgacgccgt ccacaccttc cgcgaggaag tccgcaaggt
      721 cggccccgtc cggtttatac gcttcaacat ctaccccgac ggcggcgtca gccggctgag
      781 gatgatgggg acgctggcct agggcgtgaa atccggctgg gtccgctgtg ggccacgaag
      841 ccaatgtccg ctttcgaccc atagcggaca ttcggagagt ccacctaccg tcgccgtcat
      901 tgaaccgctt ggggcggcat ggacatcctg gcacggcctg aagacaactt agcgggcgaa
      961 gcaggaggcg cagttgcgac cgtttgagtt catcatcgtg ttcctgtcgt tcatttacac
     1021 cctgggcctc acgcacctac tgttcgccgc gacgcgcatg gtgcgccacc gccgggcgct
     1081 aatcttctcc tggccgcacg ccatctggat gtttgccatc cttctgttgc tagtcgccaa
     1141 ctggatctcc ctctgggact tccacgcact gccgcagatg tcgctctgga ccattgtcac
     1201 gggcgtcgtc ttgtcggtga tgcagtactt catctgcgcg ctcgtctcgc ccgacttcga
     1261 ggacggcgaa tcttacaaca tgcgcgcctt tcatgagcgc gagggccgca cctatgtggg
     1321 ggcagtgctg gcgatgttgg tcttgtcgct aatcacgaac tacgccgccg gtgcgaagct
     1381 cggcgtccag aattgggccg accagaactc cctggtgatc gcgatggccc cgcccgcgct
     1441 tctcgccttt ttcgtccgag ctcactgggc gcagcttgtg ggcccaatcc tgaccgcagg
     1501 actgctggtg gcaaccctcg gcgtctacta tccggtgctg cgatagccgc gtcggcatcg
     1561 acctttcaaa gccagcccgg ctagtgggag tcttcgccgg tttccgacct tgcgggtgtc
     1621 agctttcgga cagcgagctg aagaccgctt tcgacccata gcggaccttc ggcggcgaat
     1681 gcgacgttgg tcgaggcggg aaagcctgat cagtctcccg ccaccggttc caggaccagc
     1741 cgttcgccgt tgatccgcaa ggtttcgccg gccggcgcgg tcagtcggcg caccgcgtat
     1801 ttgggggtga acccgatgca caggctcgcc cgctcgccgc tcaggctgcg cccgcagccc
     1861 gactcgtcca gcttcagctg cgcgctggag ccgtcggagc agctgagcac gatctcggcg
     1921 ccacgctgcg atggggcgca ggagaacgtc ggctggcgcg catccaccag cgccatcagc
     1981 ggctcgctgg gccgcagctc gccgctgacg agatgatgac cgatcaccgc aaagacgggc
     2041 cgcggggcgc cggtcgcgga cctcgccgcg tcgtgaatca tgcggtcagc acc
//
LOCUS       DATAJL010000032         2021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13323,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000032 DATAJL010000000
VERSION     DATAJL010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13323"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /locus_tag="VHN39_00545"
     CDS             <1..364
                     /locus_tag="VHN39_00545"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2814852.1"
                     /translation="GYVVLSVNYRGGSGYGLDFREAQNFGAKGAAELAFQSSPLGTID
                     KWKSPVLLVHADDDRNVPFSQTVQLVEELRQQKVEFEQIVLPDEIHDLLRADSWNRFF
                     HATDDFFARHLQSEPAHR"
     gene            386..2008
                     /locus_tag="VHN39_00550"
     CDS             386..2008
                     /locus_tag="VHN39_00550"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2814853.1"
                     /translation="MEGLRATSTLGRRLAGGGLACVLGLALASPSWAATAAAPGLPAG
                     AQPQDIDRLAARVLEKFAVPGMAVAIVKDGKVLFAKGYGVREAGKSDKVDSTTLFGIG
                     SNTKAFTVAALAMLVDEGKISWDDKVIDRLPSFRLYDPYVTRELTIRDLLTHRSGLGL
                     GSGDLMLFPPSDFTRAEIIHNLRYFPPASSFRSKFAYDNLLYIVAGELVPAVTGISWE
                     TFVQTRILDRLGTGCAATFSLTSGNANVAMPHVMVGDKLKVVIPDPSTAYDPAGSIEC
                     NADGMAKWAELQLAGGRFQDGSVLFSAARHKEMWTPQTIVAPLPDSAAMTRTHFRDYG
                     LAWFIEDYEGAQRVWHTGGLVGMVSAVSLLPEQHVGIVVLSNQQSGGRAAMTQSLLDA
                     MLGRPARDWIAIVGAQEAEQSKREAAADHDADTSIQAAGGHAFLALDAYVGVYHDPWR
                     GDVTVKKQGEKLRMVFSRTTDMQGDLQAMKGNVFAVRWDDRTLKADALVNFRTGMDGS
                     VSGMTMAPLSPTTDFSFDFQDLDFTKSSQNPH"
BASE COUNT          354 a          689 c          652 g          326 t
ORIGIN      
        1 gggctatgtc gtgctctcgg tcaactaccg cggcggcagc ggctacggcc tcgacttccg
       61 cgaagctcag aacttcggag ccaagggcgc ggcggaactg gccttccagt cctcaccgtt
      121 ggggaccatc gacaagtgga agtcgccggt gctgctcgtg catgccgacg acgaccgcaa
      181 cgtcccgttc tcccagacgg tgcaactcgt tgaggagctg cgtcagcaaa aagttgagtt
      241 cgaacagatc gtcctgcccg acgagatcca cgacctgctc cgtgccgact cctggaacag
      301 gttcttccac gccaccgacg acttcttcgc ccggcatctc cagtccgagc cggcgcaccg
      361 ctagagcacg agagggagga tcaccatgga aggtctgcgc gccacatcga ccctcggccg
      421 gcgcctcgcc ggggggggcc tggcctgcgt gctggggctc gccctggcgt cgcctagctg
      481 ggccgcgaca gccgccgccc ccggcctgcc ggctggagcg cagccccagg atatcgaccg
      541 gctcgcggcg cgggtcctgg agaaattcgc cgtgccgggc atggccgtcg cgatcgtcaa
      601 ggacggcaag gtgctcttcg ccaagggcta tggcgtccgc gaggccggca agtccgacaa
      661 ggtcgattcg accaccctct tcggcatcgg ctccaacacc aaggcgttca cggtggcggc
      721 cctggccatg ctggtggacg agggcaagat cagctgggac gacaaggtca tcgaccggct
      781 gccgagcttc cgcctctacg acccctatgt gacccgcgaa ctgacgatcc gggacctgct
      841 gacgcaccgc agcggcctgg ggttgggatc gggggacctg atgctgttcc cgcccagcga
      901 cttcacccgc gccgagatca tccacaattt gcgatacttc cccccggcct ccagcttccg
      961 gtcgaagttc gcctacgaca atcttctcta catcgtcgcc ggtgagctgg tgcccgccgt
     1021 caccgggatc agctgggaga ccttcgtcca gacccggatt ctggaccggc tggggaccgg
     1081 atgcgcggcg acgttcagcc tgacctcggg caacgcaaat gtggccatgc cgcacgtgat
     1141 ggtcggcgac aagctgaagg tggtcatccc cgatcccagc acggcctacg atccggccgg
     1201 ctccatcgaa tgcaacgccg acggcatggc caagtgggcc gagctgcaac tggccggcgg
     1261 gcgttttcag gacggatcag tcctgttcag cgccgcccgg cacaaggaga tgtggacgcc
     1321 ccagaccatc gttgctccgc tgccggactc ggccgcgatg acccggacgc acttccgaga
     1381 ctatggcctc gcctggttca tcgaggacta cgagggcgcg cagcgtgttt ggcacacagg
     1441 cggcctcgtg gggatggtca gcgccgtctc tctgcttccc gagcaacacg tcggcatcgt
     1501 cgtcctcagc aatcagcaaa gcgggggcag ggcggctatg acgcagtcct tgctagacgc
     1561 catgctgggc aggccggccc gggattggat cgccatcgtg ggcgctcagg aggccgaaca
     1621 gtcgaagcgc gaggcggcgg ccgaccacga tgcggacact tcaatccagg ccgccggggg
     1681 ccacgcgttc ctggccctgg acgcctacgt cggcgtctac cacgacccat ggcgcggcga
     1741 cgtcacggtc aaaaagcagg gtgaaaagct gcggatggtg ttcagccgca ccaccgacat
     1801 gcagggcgac ctgcaggcca tgaagggcaa cgtcttcgcg gtgcgctggg acgatcgaac
     1861 gctgaaggcc gacgccctgg tcaatttccg caccgggatg gacggctcgg ttagcggcat
     1921 gaccatggcg cctctgtcgc ccaccaccga cttcagcttc gacttccagg acctcgactt
     1981 cacgaaatcg tcccaaaatc cgcactgaac cgggcggcgg c
//
LOCUS       DATAJL010000033         2782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26182,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000033 DATAJL010000000
VERSION     DATAJL010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2782
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26182"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            336..1460
                     /locus_tag="VHN39_00555"
     CDS             336..1460
                     /locus_tag="VHN39_00555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015923292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX2814854.1"
                     /translation="MADGNITKDAMYGAVAPDDFESMLTLDRYGERSTAFDKIISATH
                     DHFWDPLDKRYIDFDEPFDLENEAMTPEEQNPILRLPYVSQTLKDPKRRIAFINYMQL
                     RGFSSILHGEQGALNLSASLCHVLYDQGAQEYAANQTREEARHVTAFAKYIKTRWGRP
                     TECGAALKSLLVEIIEAPEVYKKIVGMQMLVEGLAMGAFANGYRNNRDPVARKLFQLV
                     MTDEAFHHKFGKIWADRTIPKLTEAERNMVEDWTAHCAQSLLFDRGDPRQQAEIYGMF
                     DLDPDRVVADIIQRRKERDPTRKFKGETNVFRVLIKTLLQASLITERTRGFYAMYVDM
                     DELAAEGGRTVGDDIAEDGIRYLQAINFKDGARAVSIAAE"
     gene            1593..2117
                     /locus_tag="VHN39_00560"
     CDS             1593..2117
                     /locus_tag="VHN39_00560"
                     /inference="COORDINATES: protein motif:HMM:NF019819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEX2814855.1"
                     /translation="MFKRLSAILAAAAFLAASHAVAMAQPVPHVELTKMMGRWYEVAR
                     LPNKIQHGCQAGASDWTRTAEGFAVVQSCHRDTPDGPLAEWKARARVADPISNAKFKM
                     SFFGGLVSQEYWVLDQRSDEGWLILATHDGKYLWLMSQKPTLPVSIRAEAVARIKQLG
                     FDVGRLEFPLPVRG"
     gene            complement(2127..2372)
                     /locus_tag="VHN39_00565"
     CDS             complement(2127..2372)
                     /locus_tag="VHN39_00565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814856.1"
                     /translation="MAMYTFYLCNLGGGSSSFESFNLGSDADAPARALKMLAEHPSCA
                     YVAVWSGERPVLEHHREAVIFQAPNRPAVVAAPQHSS"
     gene            2561..>2782
                     /gene="mmcB"
                     /locus_tag="VHN39_00570"
     CDS             2561..>2782
                     /gene="mmcB"
                     /locus_tag="VHN39_00570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair putative endonuclease MmcB"
                     /protein_id="HEX2814857.1"
                     /translation="MDTTVTLVTVSRPETTAAVTRGAARLLTALGYAPLAEVTLPNGR
                     RADLMALGRRGEIFIVEVKSSLEDFRTDQK"
BASE COUNT          505 a          939 c          908 g          430 t
ORIGIN      
        1 cccgcaacgc acacgccgag ggccgcagcc gcgatgcgat cacgcacctt acggcgcggc
       61 acggcgcggg cccggcgaag tcgacgcccg cccacatcct ctgcggcgcg cccgtgcgcc
      121 gcgcttcgtc gtccagtccg tgaagggcct tgcaaagcgc cggcgtttgg tccgcaaggg
      181 ccggcgttgc ggagagggtc gcgatgaaca gggcgtagat gatctggcgc atgcctagac
      241 tatagttcga tcccggcgag tcggcaggcc ggcatttcct ttgacgccgc cgccggccgg
      301 ggcgatcctt cctggaggac gttcaggagg tctcgatggc cgacggcaac atcaccaagg
      361 acgccatgta cggcgcggtg gccccggacg acttcgagtc catgctgacg ctggaccgct
      421 atggcgaacg gtccacggcc ttcgacaaga tcatctcggc gacccacgac cacttctggg
      481 atccactcga caagcgctac atcgacttcg acgagccctt cgacctcgaa aacgaggcga
      541 tgacgccgga ggagcagaac ccgatcctgc gcctgcccta tgtgtcgcag accctgaaag
      601 acccgaagcg gcggatcgcc ttcatcaact acatgcagct gcggggcttc tcctcgatcc
      661 tgcacggcga gcagggcgcg ctgaacctgt cagccagcct ctgccacgta ctctacgacc
      721 agggcgccca ggaatacgcc gccaaccaga cccgcgaaga ggcgcgccac gtcactgcct
      781 tcgccaagta catcaagacc cgctggggcc ggccgacgga gtgcggagcg gcgctgaaga
      841 gcctcctggt ggagatcatc gaggctccgg aggtctacaa gaagatcgtc gggatgcaga
      901 tgctggtgga gggtctggcc atgggcgcct tcgccaacgg ctatcgaaac aaccgcgacc
      961 cggtggccag gaagctcttt cagctggtga tgacggacga ggccttccac cacaagttcg
     1021 ggaagatctg ggccgaccgc accattccca agctgactga ggccgagcgc aacatggtcg
     1081 aagactggac ggcgcattgc gcccagtcgc tgctgttcga ccggggcgac ccgcgccagc
     1141 aggccgagat ctacggcatg ttcgacctcg atccggatcg ggtggtggcc gacatcatcc
     1201 agcgccgcaa ggaacgcgac cccacccgga agttcaaggg cgagaccaat gtcttccgcg
     1261 tgctcatcaa aaccctgctg caggccagcc tgatcaccga gcggacgcgg ggcttctacg
     1321 ccatgtacgt cgacatggat gagctcgccg ccgagggcgg ccgcacggtc ggcgacgaca
     1381 tcgccgagga cggcatccgc tacctgcagg cgatcaactt caaggacggc gcgcgggccg
     1441 tttcgatcgc agccgagtaa gattggcgcg gcggacgggc gcgaaggtga catcgccctc
     1501 aaaagggcgc gtttgtcatg cgtcctaatg cggcgcccgc gatcccaccg cgggcgtttc
     1561 aattgtcaca gcacgaagat atccaacggc ccatgttcaa gcgcctgtcc gccatcctgg
     1621 ccgccgcggc cttccttgcc gccagccacg ccgtggccat ggcccagccg gtgccgcacg
     1681 tcgagctgac caagatgatg ggccgctggt acgaggtcgc ccgcctgccc aacaagatcc
     1741 agcacggatg tcaggccggc gcctcggact ggacccgcac cgccgagggc ttcgccgttg
     1801 tccagagctg ccaccgggat acgccggacg ggccgcttgc cgaatggaag gcccgggccc
     1861 gggtcgccga cccgatctcc aacgccaagt tcaagatgag cttcttcggc ggcctggtgt
     1921 cccaggaata ctgggtgctc gaccagcgct ccgatgaggg ctggctgatc ctggccaccc
     1981 acgacggcaa gtacctgtgg ctgatgtcgc agaagcccac cctgcccgtg agcatccgcg
     2041 ccgaggccgt ggcccgcatc aagcagttgg gcttcgacgt gggccgtctg gaattccctc
     2101 tgcccgtgcg cgggtgagga cctgaactag gacgagtgct gaggcgcggc gaccaccgcc
     2161 ggccgattgg gcgcctggaa gatgaccgcc tcgcggtggt gctccaggac cggccgctcc
     2221 ccgctccaca ccgcgacgta ggcgcagctg ggatgctccg cgagcatctt gagcgcgcgc
     2281 gccggagcgt cggcgtcgga gcccaggttg aacgactcga acgagctgga gccgcctccg
     2341 aggttgcata ggtagaaggt gtacatagcc atttgtgtac ccccgacgag cgggagcgca
     2401 tggccgtgaa aggccaagtc tctcagccgc cagcgcccga gggcctatgc cggcgatgtc
     2461 gggaaactaa cacgttatgt gaagtttgtg tcgcgcattc gcgtacggcg cacttttcga
     2521 gaggcttgcg tccggaacgt agccggaaca atctggggcg gtggacacca ccgtcaccct
     2581 cgtcacagtc tcacggcccg agaccaccgc cgcggtcacc cgcggggccg cgcggttgtt
     2641 gaccgccctg ggctatgccc ccttggctga ggtgaccttg cccaacggcc gccgcgcgga
     2701 cctgatggcc ctcgggcggc gcggcgagat cttcattgtc gaggtgaagt cgagcctcga
     2761 ggacttccgg accgaccaga aa
//
LOCUS       DATAJL010000034         4197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_519,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000034 DATAJL010000000
VERSION     DATAJL010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4197
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_519"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VHN39_00575"
     CDS             <1..479
                     /locus_tag="VHN39_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEX2814858.1"
                     /translation="IDVSAEIDGFFGDTGASFAVPPVAAKVERLCRDGRRALWTGIRA
                     VRPGASLNAPGERIEAFARQNGYSLVRNLASHGVGSALHEAPTEIATWRDPAERRRIT
                     EGLVFTLEPFLSLGADWVDETGDGWTLRPRGGEPTVQYEHTMVATRQGPVVLTLAD"
     gene            623..1333
                     /locus_tag="VHN39_00580"
     CDS             623..1333
                     /locus_tag="VHN39_00580"
                     /inference="COORDINATES: protein motif:HMM:NF016733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2814859.1"
                     /translation="MLKSDRLIARLVATGGLFALALATASSAQASIVQNGSFESQTGP
                     FVNNVANYMQLGAGSTEIAGWTITSSSGNIVLAQTPTGDGQSAADGTYFIDLSGLGSE
                     SPDGAVSQTISTVAGATYGFAMDLGTGNTGTIFASVGGNLLSLSSGASFTVGGTSWTQ
                     WTGSFTGDALNHAPLLTIGNGTRGSQIDFVDNISVVQTRGGTGGVPEPEAWSLMILGF
                     GGIGATLRRRRMKVLALA"
     gene            1415..1549
                     /gene="rpmH"
                     /locus_tag="VHN39_00585"
     CDS             1415..1549
                     /gene="rpmH"
                     /locus_tag="VHN39_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEX2814860.1"
                     /translation="MKRTFQPSRLVRARRHGFRLRMSTKNGQKVLARRRAKGRKRLSA
                     "
     gene            1575..1940
                     /gene="rnpA"
                     /locus_tag="VHN39_00590"
     CDS             1575..1940
                     /gene="rnpA"
                     /locus_tag="VHN39_00590"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008262129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEX2814861.1"
                     /translation="MSDALLKIERLRKRPDFLACAKAPSCARGAVLIQARPRDAEPTI
                     RAGFTATKRIGGAVERNRAKRRLREAARLLLPAHASPGFDYVFVARGGVTTRPWPRLL
                     DDVKSALIRLAADRDRPAT"
     gene            1976..3754
                     /gene="yidC"
                     /locus_tag="VHN39_00595"
     CDS             1976..3754
                     /gene="yidC"
                     /locus_tag="VHN39_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0032977 - membrane insertase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEX2814862.1"
                     /translation="MQEDSSRNTIIFLVCALVLFILYNQFVMGPRQKAAEAERRAHPA
                     VAAQTVPGAPALNAPPAVTRAAALAASPRVPVATPALKGSISLRGARLDDLFLTEYRQ
                     TTDKTSPPVEMLRPEGTPFPWFVDFGWVGQNVPNLPGATTNWTLAEGSTLSPGQPVVL
                     TYANGQGLTFSRRIEVDEHYMFTLTDTVTNGGASPVTLAPYGSVQRQGVPPDVGKSGV
                     VHEGWIGYLDGRTRAFKYKDIKADAAPQQFDSADAWTGITDRYWLAAIVPNRAEKVHV
                     TFHDSKVAGVDVYEANYTALPISVAPGHQASVTQRLFAGAKTVPMLQAYEKNLGIAHF
                     DEAVDWGMFWFFTRPIFIFLEFIFAHVGTFGIAILLLTICVRAAFFPIAQRQYESMTK
                     MKKVQPLMEEVKVRFKDDPAKQQQEIMALYQREKVNPLAGCLPILLQIPVFYSLFKVL
                     SVTIEMRHAPFLAFTDLSARDPTTIWNLFGLIPWNPAHAPLIGGVLDTTLHLGILPLA
                     YGFTMWLTMSLSPPAGDPAQQRIFQFMPLIFMFIMAPYAVGLLVYWTWSNCLTTIQQY
                     AMMRRFKVDNPIDRTIARLTGKAPPG"
     gene            3766..>4197
                     /gene="yihA"
                     /locus_tag="VHN39_00600"
     CDS             3766..>4197
                     /gene="yihA"
                     /locus_tag="VHN39_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006272245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HEX2814863.1"
                     /translation="MSENFDADELEAARVLFAHEVKFMMGAVEIAGLPPADLPEVAFA
                     GRSNVGKSTLINAVTGRLHLARASNSPGRTREVNFFVADEKLRLVDLPGYGFARASRG
                     DVKKFQNLGRDYLRGRPNLKRAYLLIDARHGLKDVDTEALDT"
BASE COUNT          668 a         1560 c         1303 g          666 t
ORIGIN      
        1 acatcgacgt ctccgccgag atcgacggct tcttcggcga caccggcgcg agcttcgcgg
       61 tcccgccggt ggccgccaag gtcgagcgcc tctgccggga cggccgccgc gcgctctgga
      121 ccggcatccg cgccgtgcgg ccgggcgcct cgctgaacgc gcccggcgag cgcatcgagg
      181 ccttcgcgcg ccagaacggc tacagcctgg tccggaacct cgccagccac ggggtcggct
      241 cagccctgca cgaggccccc accgagatcg ccacctggcg cgaccccgcc gagcgccgcc
      301 gcatcaccga gggcctggtc ttcaccctgg agcccttcct ctccctgggc gccgattggg
      361 tcgacgagac cggcgacggc tggaccctgc gcccccgggg cggcgagccc accgtccagt
      421 atgagcacac catggtcgcc acccggcagg ggccggtggt gctgacgctc gccgactaat
      481 ccccgccgcc gctcgcctca gcggcgaagt cggcccggaa ttcatacccc aaatgggaga
      541 tgtgggcgcc ccgccgctcc gggatgcttg agcctcagag gtcggcgcac ggtgcgcgcg
      601 gccctgcttc tgggggtatc tcatgttgaa atccgatcgc ctgatcgccc ggctcgtggc
      661 cacgggcggt ctgttcgccc tggcgctcgc caccgcttcg tcagcccagg ccagcatcgt
      721 ccagaacggc agcttcgaga gccagaccgg cccgttcgtc aacaatgtcg ccaactacat
      781 gcagctgggc gccggaagca cagagatcgc cggctggacc atcaccagct ccagcggcaa
      841 catcgtcctg gcccagaccc cgaccggcga cggccagagc gccgcggacg ggacctattt
      901 catcgacctg tccgggctcg gcagtgaatc ccctgacggc gcggtcagcc agaccatcag
      961 caccgtcgcc ggcgcgacct acggcttcgc catggatctc gggaccggga acaccggaac
     1021 catcttcgcc tcggtgggcg ggaacctgct gtcgctttcg agcggtgcgt cgttcaccgt
     1081 cggcggcacg agctggacac agtggaccgg aagcttcacc ggcgatgccc tcaaccacgc
     1141 cccgctactc accatcggca acggaacgcg cgggtcgcag atcgacttcg tggacaacat
     1201 ctccgtcgtc caaacccgtg gcggcacggg cggcgttccc gagccggaag cctggagcct
     1261 gatgatcctg ggcttcggcg ggatcggcgc gactctgcgt cgtcggcgca tgaaagtcct
     1321 cgcgctcgcc tagggtcttt agggagcggt ggttgacacc atcgcttcct tcccctatcc
     1381 accgccgctc gattttcgac ccccggagcc ttccgtgaag cggactttcc agccttcccg
     1441 tctcgtccgc gcccgtcgcc acggcttccg cctgcgcatg tccaccaaga atggacagaa
     1501 ggtgctggcg cgccgccgcg ccaagggccg caagcgcctg agcgcctaag cccggcttgg
     1561 gttatggtgt cggtgtgtcc gacgccctct tgaaaattga acgcctgaga aagcgcccgg
     1621 acttcctggc ctgcgccaag gcgccctcgt gcgcccgggg ggcagtcctc atccaggccc
     1681 ggccgcgaga cgccgaaccc acaatccgcg ctggcttcac cgccaccaag cgcatcggcg
     1741 gggccgtcga gcgcaatcgc gccaagcggc gtttgcggga ggccgcccgc ctcttgcttc
     1801 cggcccacgc atccccaggt ttcgactatg tgttcgtcgc gagaggcggg gtgacgaccc
     1861 gcccctggcc gcgtttgctt gacgatgtga aaagcgcgct gataaggctc gccgccgacc
     1921 gcgaccgccc agcgacttaa gggcgcttta tctacagccg gaccgcgccc accccatgca
     1981 agaagattcc agccgcaaca caatcatctt cctcgtgtgc gcgctcgtgc tgttcatcct
     2041 ctacaaccag ttcgtgatgg gaccccggca gaaggccgcc gaggccgagc gcagggccca
     2101 tccggccgta gccgcccaga ccgtgcccgg cgcgccggcg ctgaacgccc cgcccgcggt
     2161 gacccgcgcc gcggctctgg ccgccagccc ccgggtgccg gtggcgaccc cggcgctgaa
     2221 gggctcgatc tcactgcgcg gcgcgcgcct ggacgacctc ttcctcaccg aataccgcca
     2281 gaccaccgac aagacctccc cgccggtcga gatgctgcgc cccgagggca cgcccttccc
     2341 ctggttcgtg gacttcggct gggtcggcca gaacgtgccg aacctgcccg gcgccaccac
     2401 caactggacg ctcgccgaag gctcgacgct gtcccccggc cagccggtcg tcctgaccta
     2461 tgccaacggc caggggctga cgttcagccg ccggatcgag gtggacgagc actacatgtt
     2521 cacgctcacc gatacggtga ccaacggcgg cgcctcgccg gtgacgctgg cgccctacgg
     2581 ctcggtgcag cgccagggcg tgccgcccga cgtcggcaag tccggcgtcg tgcacgaagg
     2641 ctggatcggc tacctcgacg gccgcacgcg ggccttcaag tacaaggaca tcaaggccga
     2701 cgccgcgcca cagcagttcg attccgcgga cgcctggacc ggcatcaccg acagatattg
     2761 gctggccgcc atcgtcccca atcgggccga gaaggtccac gtcacctttc acgacagcaa
     2821 ggtggccggc gtcgacgtct atgaggccaa ctacacggcg cttccgattt ccgtcgcgcc
     2881 gggccaccag gcgagcgtga cgcagcgcct cttcgccggc gccaagaccg tgcccatgct
     2941 gcaggcctac gagaagaacc tcggcatcgc ccacttcgac gaggcggtgg actgggggat
     3001 gttctggttc ttcacccgcc cgatcttcat cttcctggag ttcatcttcg cccacgtggg
     3061 caccttcggc atcgctatcc tgctgctgac catctgcgta cgcgcggcct tcttcccgat
     3121 cgcgcagcgc cagtatgagt cgatgaccaa gatgaagaag gtccagcccc tgatggaaga
     3181 ggtgaaggtc cgcttcaagg acgacccggc caagcagcag caggagatca tggcgctcta
     3241 ccagcgggag aaggtcaatc cgctggccgg ctgcctgccg atcctgctgc agatcccggt
     3301 cttctattcc ctgttcaagg tgctctcggt gaccatcgag atgcgccacg cacccttcct
     3361 ggccttcacc gacctctcgg cgcgcgaccc caccaccatc tggaacctgt tcggcctgat
     3421 cccttggaac ccggcgcacg cgcccctgat cggcggggtg ctggacacca ccttgcacct
     3481 gggcatcctg ccgctcgcct acggcttcac catgtggctg accatgtcct tgagcccgcc
     3541 ggccggcgac ccggcccagc agcggatctt ccagttcatg ccgctgatct tcatgttcat
     3601 catggcgccc tacgcggtgg gcctgctggt ctactggacc tggtccaact gcctgaccac
     3661 catccagcag tatgcgatga tgcgccgctt caaggtcgac aatccgatcg accggaccat
     3721 cgcgcggctg accggcaagg ctccccccgg gtgagcgaga atggggtgag cgagaacttc
     3781 gacgcggacg aactggaggc tgccagggtc ctcttcgccc acgaggtgaa gttcatgatg
     3841 ggcgccgtcg agatcgcggg cctgcccccg gccgacctgc cggaagtggc cttcgccggc
     3901 cgctccaacg tcggcaagtc caccctgatc aatgcggtga ccggccgcct gcacctggcg
     3961 cgggcgtcca actcgccggg ccgcacccgc gaggtgaatt tcttcgtggc cgacgagaag
     4021 ctgcgtctgg tcgacctgcc cggctacggc ttcgcccgcg cctcccgcgg cgacgtgaag
     4081 aagttccaga acctcggccg cgactacctg cgcggccgcc cgaacctcaa gcgcgcctac
     4141 ctgttgatcg acgcccgcca cggcttgaag gatgtcgaca ccgaggcgct ggacacc
//
LOCUS       DATAJL010000035         2401 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_90459,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000035 DATAJL010000000
VERSION     DATAJL010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90459"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..420)
                     /locus_tag="VHN39_00605"
     CDS             complement(<1..420)
                     /locus_tag="VHN39_00605"
                     /inference="COORDINATES: protein motif:HMM:NF017833.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolysaccharide biosynthesis protein"
                     /protein_id="HEX2814864.1"
                     /translation="MSRMLDESVGPVTIHQALDALGDRSFGGVMLLLALPALVLPPGI
                     SAVLGAPLLLVCAQLLLLRPRPWLPSLVGRCGLRRARAERVFAKAIPILARAESWTRP
                     RLPQLLFPLHEQIIALAGMSMSLALILPLPLAHTASAL"
     gene            complement(882..1004)
                     /locus_tag="VHN39_00610"
     CDS             complement(882..1004)
                     /locus_tag="VHN39_00610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814865.1"
                     /translation="MKNANLLLALSLSPAVASGAYAESPGFNALLAQVLAKACS"
     gene            complement(1023..1778)
                     /locus_tag="VHN39_00615"
     CDS             complement(1023..1778)
                     /locus_tag="VHN39_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2814866.1"
                     /translation="MRFEGKDILLTGGAGGLGGLIARRLESEGARVCVLDRVAPTGVS
                     EYMRQDLSTPEGIEAAAAAAADRPYDILFNLAGIQHFGPLEHQSPEHLVASYMVNLIA
                     PVRLTQAVLPRMRARGSGQIVNVGSIFGSINFAHFVTYSSAKAGLRGFSQAMRRELAG
                     SGIDVTYVAPRAVRTPLNTPQVMEFARLTGMNMDQPQAVAARIVDVVAARKREAYLGF
                     PEAFFVRLNALLPGLVDQALSGNDRKAARLFAR"
     gene            complement(1768..>2401)
                     /locus_tag="VHN39_00620"
     CDS             complement(1768..>2401)
                     /locus_tag="VHN39_00620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HEX2814867.1"
                     /translation="GQMTLASVPQIQDGLAGRISRETYLAYLTEAYHHVKHTVPLMRA
                     AKAGLDDGHARFRVALDEYIAEETGHEEWILNDIRHTGGDPEAVRTGEPRDATRRMVA
                     FVYDYIARRNPMGFFGMVLVLEGTSVRLATQGAEAVAASLNLGPESFSYLSSHGAVDQ
                     EHLVFFQRLMDEVDDPADQDAIIEVANAVFILFAEVFRSIPHERSLAHAV"
BASE COUNT          387 a          740 c          883 g          391 t
ORIGIN      
        1 gagggcggag gcggtgtggg cgagggggag aggcaggatc agggccaatg acatgctcat
       61 gccggcaagc gcgatgatct gctcgtgcaa gggaaagagc agctgtggaa ggcgaggtcg
      121 cgtccaggat tcagctcgcg cgaggattgg gatcgccttg gcgaagacgc gctcggcacg
      181 ggctcttcgc aggccgcacc tcccgaccag gctgggaagc cagggtctgg gcctcagaag
      241 aagcagttgg gcgcagacca ggaggagggg tgcgccaagc acggcggaga ttccgggcgg
      301 caatacaagc gccggcagcg ccagcaacag catcactccg ccgaacgatc tgtcgcccag
      361 cgcgtccaga gcctgatgga tagtcaccgg acctacgctt tcgtccagca tgcggctcat
      421 cgtcagggat agagtcgcac cctggggccc gtggactggc gtcgctccgt cagtcacgcc
      481 ggacaggcgg ccgacgccgc ggtcacagcc atgtggtgac gttcgccatc cagcggtcgg
      541 tgggccatcg tgagtccttc aacaacgctc cgagtgacgg ggtgacggtc gcctgttgcg
      601 gctgccgttc gtgtgacgag atttgggccg cgcggagcgg cgcggcccat ttccaggagt
      661 cgcggcttgt caggccttgg tgtcgatccg cgtcccttga ccctgcgcag gcgaggcgac
      721 ggcggccgca ctccccgcgt cgtcgccatc gtggtcgttc ttcgcggtcc gcgccggggg
      781 cgctggcgga gttgaggttg gctggatagg cggagtggcc ggggcgccga tgttggagac
      841 agtcatggta gtcctcgctc tgggttgaac aggattttcg gttagctgca cgccttggcg
      901 agaacctgcg caaggagggc gttgaagccg ggcgactcgg cgtacgcgcc cgaggcgacg
      961 gcggggctca gggaaagggc gaggaggaga ttggcgttct tcatctgtcg gactccagac
     1021 gatcagcggg cgaagaggcg agcggccttg cggtcgttgc ctgagagggc ctggtccacc
     1081 aggccgggaa gaagggcgtt cagccgcacg aaaaacgcct cggggaagcc gaggtaggcc
     1141 tcgcgcttgc gggcggcgac cacgtcgacg atgcgcgcgg cgaccgcttg cggctggtcc
     1201 atgttcatgc cggtcaggcg cgcgaattcc atgacctggg gcgtgttgag cggcgtgcgc
     1261 actgcccggg gcgcgacata ggtgacgtcg atccctgatc cggcgagctc gcgccgcatc
     1321 gcctggctga agcctcgcag cccggccttg gcgctggagt aggtgacgaa gtgggcgaag
     1381 ttgatcgagc cgaagatcga gccgacgttg acgatctggc cgctgccgcg cgcgcgcatg
     1441 cggggcagga ccgcctgggt cagccggaca ggcgcgatca ggttgaccat gtagctggcg
     1501 acgagatgct caggcgactg atgctcaagc ggtccgaagt gctggatgcc ggcaaggttg
     1561 aaaaggatgt catagggccg gtccgcggcg gccgccgcgg cggcttcgat gccctccggg
     1621 gtcgacaggt cctggcgcat gtattcgctc acgccagtgg gcgcgacgcg gtcgaggacg
     1681 cagacccgcg cgccctcgct ctccagccgg cgtgcgatca ggccgccgag cccgcccgcg
     1741 ccgccggtga gcaggatgtc cttgccctca aaccgcatgg gcgaggctcc gctcgtgcgg
     1801 aatcgatcgg aagacttcgg cgaagaggat gaagacggcg ttcgccactt cgatgatcgc
     1861 gtcctggtcg gccggatcgt cgacctcgtc catcagccgc tggaagaaga ccaggtgctc
     1921 ttgatccacc gccccgtgag acgacagata gctgaagctc tccgggccga ggttgaggct
     1981 cgccgcaact gcctcggcgc cctgggtggc caggcgaacg ctcgtgccct ccagcaccag
     2041 gaccatgccg aagaacccca tcgggttcct ccgggcgatg taatcataga cgaacgccac
     2101 catgcgccgg gtggcgtccc ggggctcgcc cgttcgcacg gcctccgggt cgcctccggt
     2161 atggcggatg tcgttgagga tccattcctc gtgcccggtc tcttcggcga tgtactcgtc
     2221 gagcgcgacc cggaagcggg catggccatc gtcgagtccg gccttcgccg cccgcatcag
     2281 cggcacggtg tgtttgacgt ggtggtaggc ctcggtgagg taggccaggt aagtctcgcg
     2341 tgagatccgc ccggcgaggc catcctgaat ctgggggacg ctggccaggg tcatctgccc
     2401 c
//
LOCUS       DATAJL010000036         3565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_103336,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000036 DATAJL010000000
VERSION     DATAJL010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103336"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1079
                     /locus_tag="VHN39_00625"
     CDS             <1..1079
                     /locus_tag="VHN39_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEX2814868.1"
                     /translation="EETELAEERAILGASEKALADIAGAREVFEGLSARVAGAARALS
                     RAHERALLAGAAETGSAVKRLTEASAALDRVLIEAGEAEAAIDAAAEAFDFEPDRLEK
                     AEERLFDLRGLARKLQVSVEALPTLRARFAERLHAVETSEGALKVAEAALATAREAYL
                     TEAGGLSAARIAAGERLAQAVMAELAPLKLDKARFRVAVTAQGEDKAGPTGLDRVAFE
                     IATNPGAPFGELGAIASGGELARFALALKAALAGRGGGPQPLMIFDEVDQGVGGAVAD
                     AVGLRLKRLAAEAQVLVVTHSPQVAARAEAHWRIAKAGEGERLRTVVEDLSAADREEE
                     IARMLAGAEITDAARAAARALMDA"
     gene            1133..3469
                     /gene="ligA"
                     /locus_tag="VHN39_00630"
     CDS             1133..3469
                     /gene="ligA"
                     /locus_tag="VHN39_00630"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEX2814869.1"
                     /translation="MIPVADLTPTDAAEELARLADEIAGHDIRYHQQDEPTISDGDYD
                     ALKRRNLEIEARFPELIREDSPSLKVGAARAAQFSEVTHGVPMLSLDNAFADEEAVEF
                     DTRIRRFLRLSADEIVGYTAEPKIDGLSCSIRYEKGHLVQAATRGDGRVGEDVTANVR
                     TIADIPNRLAGSGWPDEIEVRGEVYLGHEAFIALNAAATAAGTKTYANPRNAAAGSLR
                     QIDPKITAARPLSFFAYAWGLLSEPFAETQWEALAKLKAWGFQITPQSQRVENAAGLL
                     GAYAKMEALRPRLAYDIDGVVYKVDRLDWQHRLGFVTRTPRWAIARKFPAQQARTVLE
                     AIDIQVGRTGAITPVARLHPVTVGGVVVVNATLHNADEIARKDIRVGDTVILQRAGDV
                     IPQIVSVVLEERPKGSEPYPFPTHCPCPLHTPLAKETTASGAETVVRRCTGEFACPFQ
                     KLAHLRHFVSRRAFDIEGLGEKQLTAFNERGWIVEPADIFRLARDAAKIAELKETDGY
                     GELSVANLVAGIDARRNIALDRFIYGLGIRHIGETTSIALARHFETAERFVATAETAA
                     GQTAGPIYAELSDLDGLGPTAVEAVLAFARAGQALLIPPELSLEEHLRLAIPKLNSKT
                     RAALEARFGDWASFEAAAIQAAAETPGEAFLEVASVDAVGVVAARMIAEFFGEDHNRR
                     LVDNLMAELRVIPAERPKTDTAVAGKTIVFTGALEKMTRDEAKAQAEGLGAKVSGSVS
                     KKTDLVVAGPGAGSKLAEANKLGVQVITEDEWLALVGG"
BASE COUNT          556 a         1291 c         1246 g          472 t
ORIGIN      
        1 gtgaagagac cgagctcgcc gaggaacgcg ccatcctggg ggcctcggaa aaagcgctgg
       61 cggacatcgc cggcgcgcgg gaggtgttcg agggactgtc ggcccgggtg gccggcgccg
      121 cccgcgcgct gagccgcgcc catgagcggg cgctgctggc cggggcggcg gagaccggga
      181 gcgccgtgaa gcggctcacc gaggcgtccg cggcgctgga cagggtgctg atcgaggccg
      241 gggaggccga ggccgccatc gacgccgccg ccgaggcctt cgacttcgag cccgaccgtc
      301 tggaaaaggc cgaggaacgg ctgttcgatc tacgcggcct cgcccgtaag ctgcaggtca
      361 gcgtcgaggc gttgccgacg ttgcgcgccc gcttcgccga gcgcctgcac gcggtggaga
      421 cctccgaggg tgcgctcaag gtggctgagg cggcgctggc gaccgcccgc gaggcctatc
      481 tcaccgaggc cggtgggctc agcgccgcgc ggatcgccgc cggcgagcgc ctggcgcagg
      541 ccgtgatggc ggaactcgcg ccgctcaagc tcgacaaggc ccggttccgc gtcgcggtga
      601 cggcgcaggg cgaggacaag gccggcccga ccggcctcga ccgtgtggcc ttcgagatcg
      661 ccaccaaccc aggcgcgccg ttcggggagc tgggcgccat cgcctccgga ggcgagctcg
      721 cccgcttcgc gctcgcgctc aaagccgcgc tggccggccg cggcggcggg ccgcagccgc
      781 tgatgatctt cgacgaggtt gaccagggcg tgggcggcgc cgtcgccgat gccgtaggcc
      841 tgcgcctgaa gcgcctggcg gcggaagccc aggtgctggt ggtcacccac agcccgcagg
      901 tcgccgcccg cgccgaggcc cactggcgca tcgccaaggc gggcgaaggc gagcggctgc
      961 gcacggtcgt cgaagacctc tccgccgccg accgcgaaga ggagatcgcc cgcatgctgg
     1021 ccggcgccga gatcaccgac gcggcgaggg cggcggcccg ggcgctgatg gacgcctgac
     1081 gcctttcctc tcccgcttcg ccggaaagga agatcgcgct agatcgtacg gcatgatccc
     1141 cgtcgccgac ctcaccccca ccgacgccgc cgaggaactg gcgcgcctgg ctgacgagat
     1201 cgcagggcac gacatccgct accaccagca ggatgagccg acgatctccg acggagacta
     1261 cgacgccctc aagcggcgga acctggagat cgaggcgcgg tttcccgaac tgatccgcga
     1321 ggactcgccg tcgctgaagg tgggggccgc gcgggccgcg cagttctccg aggtgacgca
     1381 tggcgtgccg atgctcagcc tcgacaacgc cttcgccgac gaggaggccg tcgagttcga
     1441 cacccgcatc cgccgcttcc tgcggctctc ggccgacgag atcgtgggct ataccgccga
     1501 acccaagatc gacggcctct cctgctcgat ccgctacgag aagggtcatc tcgtccaggc
     1561 cgccacccgc ggcgacggcc gggtgggcga agacgtcacc gccaacgtcc gcaccatcgc
     1621 cgacatcccc aatcgcctgg ctggctccgg ctggccggac gagatcgagg tccgcggtga
     1681 ggtctatctc ggccacgagg ccttcatcgc gctcaacgcc gcagccacgg cggcgggaac
     1741 caagacctac gccaatccgc gcaacgccgc ggcaggctcc ctgcgtcaga tcgatccgaa
     1801 gatcaccgcc gcgcggccct tgagcttctt cgcctacgcc tggggcctcc tcagcgagcc
     1861 gttcgccgaa acccaatggg aggctctggc caagctgaag gcctggggtt tccagatcac
     1921 gccgcagagc cagcgggtgg aaaacgccgc gggcctgctc ggcgcctacg ctaagatgga
     1981 ggccctgcgg cccaggctcg cctatgacat cgacggcgtg gtctacaagg tcgaccgcct
     2041 ggactggcag caccgcctgg gattcgtcac ccgcacgccg cgctgggcca tcgcgcgcaa
     2101 gttccccgcc caacaggccc gcacggtcct ggaggccatc gacatccagg tgggccgcac
     2161 cggggccatc acgccggtcg cgcggctgca tccggtgacg gtgggcggcg tggtggtcgt
     2221 caacgccacc ttgcacaacg ccgatgagat cgcccgcaag gacattcggg ttggcgacac
     2281 ggtcatcctg cagcgggccg gcgacgtgat cccgcagatc gtcagcgtgg tgctggagga
     2341 gcggcccaag ggctcggagc cctatccctt cccgacccac tgtccgtgcc cgctgcatac
     2401 gccgctcgcc aaggagacca ccgcctcggg cgcggagacg gtggtccgcc gttgcaccgg
     2461 cgaattcgcc tgcccgttcc agaagctcgc gcatctgcgc cacttcgtgt cccgccgcgc
     2521 cttcgacatt gagggcctgg gcgagaaaca gctcaccgcc ttcaacgagc gcggctggat
     2581 cgtcgagccg gccgacatct tccggctggc tcgcgacgca gcgaagatcg ccgagctgaa
     2641 ggaaaccgac ggctatggcg aactcagcgt cgccaatctg gtcgccggta tcgacgcgcg
     2701 gcgcaacatc gcgctcgacc gcttcatcta tggcctgggc atccgccaca tcggcgagac
     2761 cacctcgatc gcgctcgccc ggcacttcga gaccgccgaa cgcttcgtgg ccaccgccga
     2821 gaccgcggcc ggccagacgg cggggccgat ctacgccgaa ctctccgacc tcgacggcct
     2881 gggccccacg gcggtggagg cggtgctggc cttcgcccgc gccggccagg ccctgctgat
     2941 cccgccggag ctttcgctcg aggaacacct gcggctggcg atccccaagc tcaattccaa
     3001 gacgcgcgct gcgctggagg cccgtttcgg cgactgggcg agcttcgagg ccgccgcgat
     3061 ccaggccgcc gccgagaccc ctggcgaggc ctttctggag gtggcctcgg tggacgccgt
     3121 gggggtggtg gccgcgcgga tgatcgcgga attcttcggc gaggatcaca accgccgcct
     3181 cgtggacaac ctcatggcgg agctgcgggt catccccgcc gaacggccca agaccgacac
     3241 cgccgtggcc ggcaagacca tcgtcttcac cggcgccctg gaaaagatga cccgtgacga
     3301 ggccaaggcc caggccgagg ggctgggcgc caaggtctcc ggctcggtgt cgaagaagac
     3361 cgacctggtg gtggccggcc ccggcgccgg ctccaaactg gccgaggcca acaaactggg
     3421 cgtccaggtg atcaccgagg acgaatggct ggccctggtg ggcggctagg ggagtagcct
     3481 cagccgcgcc gggccttcaa cctccgacta ccgccgccgg ccccctcgct tcggcaacag
     3541 ctacgaggtg cggctgccgg acggg
//
LOCUS       DATAJL010000037         1906 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_39268,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000037 DATAJL010000000
VERSION     DATAJL010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1906
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39268"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1141)
                     /locus_tag="VHN39_00635"
     CDS             complement(<1..1141)
                     /locus_tag="VHN39_00635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEX2814870.1"
                     /translation="MAARVVTVAFQGVEARRVDVEAQFTSGEVRFYLVGMGDKAISES
                     RERVRAAFSGLGLSLPSRRIIVNLAPADLPKEGSHYDLPIALGIMAAMGVIPPDALND
                     WAAVGELSLDGRITAVAGALPAAVAAGAMGLGLICPEACGPEAAWAGGTRILAAPSLI
                     ALVNHFRGTQILSPPSAGTIREPERVPDLREVKGQENAKRALEIAAAGGHNLAFVGPP
                     GSGKSMMAARLPGLLPPLTPGELLETSMIHSVAGLIAKGELTRARPFRNPHHSASMAA
                     LTGGGLKAKPGEVSLAHNGVLFLDELPEFSAQALDSLRGPLETGEVVVARANAHVRYP
                     ARVQLVAAMNPCRCGLGGLGRGACGRAPRCQSDYLGRISGPLMDRI"
     gene            complement(1288..>1906)
                     /gene="gshB"
                     /locus_tag="VHN39_00640"
     CDS             complement(1288..>1906)
                     /gene="gshB"
                     /locus_tag="VHN39_00640"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004363 - glutathione synthase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HEX2814871.1"
                     /translation="LVVNDPVEVRNAPEKLFVTDFPGLQPPTLITADREAIAEFRARH
                     GDVVLKPLNGRGGSGVTRHLADDPNLEALLEIHAELSREPVILQKFLPSVTKGDKRIL
                     LVGGEAVGAINRVPQKGQIRSNLAVGGRAEAVELTARDREICAAIGPELKKRGLLFVG
                     IDVIGDYLTEINVTSPTGAVALKSFTGIDATDILWERIESLRTTV"
BASE COUNT          314 a          670 c          636 g          286 t
ORIGIN      
        1 cgatgcggtc catcaagggg ccggagatgc ggccgagata gtcgctctgg cagcggggcg
       61 cacggccaca ggcgccgcgc ccgagtccgc ccaggccgca gcggcagggg ttcatcgccg
      121 ccaccaactg cacgcgggcc ggataacgaa catgggcgtt ggcgcgggcc accaccacct
      181 cgccggtctc cagcggtccg cgcaggctgt cgagggcctg agcggagaat tccggcaatt
      241 cgtccaggaa cagcacccca ttatgcgcca ggctgacctc gccgggcttg gccttcagcc
      301 cgccgccggt cagcgcggcc atgctggccg aatggtgcgg attgcggaac ggccgggcgc
      361 gggtgagttc gcccttggcg atcagacctg ccaccgaatg gatcatcgag gtttcgagca
      421 gttcccccgg ggtcagcggc ggcaacaggc ccggcaggcg cgcggccatc atcgacttgc
      481 ccgagcccgg agggcccacg aaggcaaggt tgtggccgcc ggccgcggcg atctccagcg
      541 cccgcttggc gttctcctga cccttcacct cgcgcaggtc cgggacccgt tcgggctcgc
      601 ggatcgtccc ggcgctcggc ggcgacagga tctgggttcc gcggaaatgg ttcaccagcg
      661 cgatcagcga gggcgcggcc aggatccgag tgccgccggc ccaggccgcc tccggcccgc
      721 aggcctccgg gcagatcagc cccaggccca tggcgccggc cgccacagcg gcgggcaatg
      781 cgcccgccac cgcggtgatc cgcccatcca gcgacagctc gcccaccgcc gcccagtcgt
      841 tgagggcgtc cggcggaatc acccccatgg cagccatgat ccccagagcg atcggcaagt
      901 cgtagtggct gccctccttg ggcaggtcgg cgggcgccag gttgacgatg atccggcggc
      961 tcggcagcga aaggcccagg cctgaaaagg cggcgcgcac gcgttcccgg ctttccgaga
     1021 tcgccttgtc gcccatgccg accagataga acctgacctc gccgctggtg aattgcgcct
     1081 cgacatctac ccggcgcgcc tcaacgccct gaaacgccac cgtgacaacg cgcgcggcca
     1141 tcccgtccca gctccccgca aatgtgatcg agagtcagtt atccacagag cgcaccacag
     1201 ggttgcgctc agatcaagaa caaaaataga acttatgggg aaaacgagac gtttccgtga
     1261 cttggcgcgg cgtcttcaca aaacaagcta gaccgtagtc cgaaggcttt caatccgttc
     1321 ccagaggata tcggtggcgt cgatccctgt gaagcttttc agggctacgg cgccggtcgg
     1381 cgaggtgacg ttaatctcgg tcaggtagtc gccgatcacg tcgatgccga cgaagagcag
     1441 gccgcgtttc ttcagctccg gcccgatggc cgcgcagatt tcccggtccc gcgcggtcag
     1501 ctccacggcc tcggcgcggc cgccgaccgc caggttggac cggatctggc ccttctgcgg
     1561 cacgcggttg atggcgccca ccgcctcgcc ccccaccagc aggatgcgct tgtcgccctt
     1621 ggtcaccgag ggcaggaact tctgcaggat caccggctcc cggctgagct cggcgtggat
     1681 ttcaaggaga gcctcaaggt tggggtcgtc ggccaggtgg cgggtcacgc cagagccgcc
     1741 gcgcccgttc aggggcttca gcaccacgtc gccatgccgg gcgcggaact cggcgatcgc
     1801 ctcgcggtcg gcggtgatca aggtcggcgg ctgcaggccc ggaaagtcgg tgacgaacag
     1861 cttctccggc gcgttgcgca cctcgacggg atcgttcacc accagg
//
LOCUS       DATAJL010000038         2144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26311,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000038 DATAJL010000000
VERSION     DATAJL010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26311"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            36..2045
                     /gene="cyoB"
                     /locus_tag="VHN39_00645"
     CDS             36..2045
                     /gene="cyoB"
                     /locus_tag="VHN39_00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018084014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009486 - cytochrome bo3 ubiquinol oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0015990 - electron transport coupled proton
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HEX2814872.1"
                     /translation="MMLLGKLSWDALPLHEPIPLAASAGMILGILFVVGLVVLKGWAP
                     YVWREWITSVDHKRIGVMYCLLALVMLLRGFTDAIMMRSQQALAFHSAGYLPPDHYDQ
                     VFSAHGTIMIFFVAMPFVIGLMNFVLPLQLGVRDVAFPTLNSVSFWLTAVGVLLTNIS
                     LFVGEFARTGWLPYPPLSELQYSPGVGVDYWLWALQISGVGTLLSGINLVVTILKMRA
                     PGMTYLRMPMFCWTALASNLLIVAAFPILTATSAMLILDRYLGFHFFTNDAGGNVMMF
                     MNLIWAWGHPEVYILILPAFGVFSEVISTFSGKPLFGYRSMVMATMGICVLAFMVWLH
                     HFFTMGAGGNVNAVFGIMSMIIAIPTGVKIYNWLFTLYGGRVRFTSPVLWSIGFMVTF
                     VLGGMTGVLLAVPPADFVLHNSLFLIAHFHNVIIGGVLFGAFAGYTYWFPKAFGFQLH
                     EGWGKAAFWCWQIGFYVAFLPLYVLGFLGMTRRMQHYDVAAWRPWLLYAAAGAGIIAL
                     GIACQVIQLVVSIRHRRRLADLTGDPWDGRSLEWATASPPPKFNFAVMPDVTGEEPYW
                     AMKEAAFARGALRDEPDYDVIEMPRNTPTGVVTAFFATCVGFAMIWHIWWLALFGIAG
                     ALATFVAFAWRDRAEDVVPAYEVAAADRANRAARAATVTHPRGAL"
BASE COUNT          281 a          768 c          664 g          431 t
ORIGIN      
        1 gcgccgcccc aagtcgcctc ccgcggaaag gccctgtgat gttgctcggc aagctcagct
       61 gggacgcgct tcccctccac gagccgatcc cgctcgccgc ctcggcgggg atgatcctcg
      121 gcatcctctt cgtggtgggc ctggtcgtgc tgaagggctg ggcgccctac gtctggcgcg
      181 agtggatcac ctcggtcgac cacaagcgca tcggcgtgat gtactgcctg ctggccctgg
      241 tgatgctgct gcgcggcttc accgacgcga tcatgatgcg ctcgcagcag gcgctggctt
      301 tccattccgc gggctacctg ccgcccgacc actacgacca ggtgttctcg gcgcacggca
      361 ccatcatgat cttcttcgtg gccatgccct tcgtcatcgg cctgatgaac ttcgtcctgc
      421 cgctgcagct gggcgtccgc gacgtggcct tccccaccct gaattcggtc agcttctggc
      481 tgaccgccgt cggcgtgctg ctcaccaaca tctcgctgtt cgtgggcgag ttcgcgcgca
      541 ccggctggct gccctacccg ccgctttcgg agctgcagta ttcgcccggg gtgggggtcg
      601 actactggct gtgggccctg cagatctccg gggtcggcac cctgctctcc ggcatcaacc
      661 tggtcgtgac catcctgaag atgcgcgcgc ccggcatgac ctatctgcgc atgccgatgt
      721 tctgctggac ggcgctggcg tcgaacctgc tgatcgtcgc ggccttcccg atcctgaccg
      781 ccacctcggc catgctgatc ctcgaccgct acctgggctt ccacttcttc accaacgacg
      841 ccggcggcaa tgtgatgatg tttatgaacc tcatctgggc ctggggtcac ccggaggtct
      901 acatcctgat cctgccggcc ttcggggtgt tctccgaggt gatctccacc ttctcgggca
      961 agcctttgtt cggctatcgc tcgatggtca tggctacaat gggcatctgc gttctcgctt
     1021 tcatggtctg gctgcatcac ttcttcacca tgggcgcagg cggaaacgtc aacgccgtct
     1081 tcggcatcat gtcgatgatc atcgccatcc cgaccggggt gaagatctac aactggctct
     1141 tcaccctcta cggcggccgc gtccgcttca cctcgccggt gctgtggtcg atcggcttca
     1201 tggtcacttt tgtgctcggc ggcatgaccg gggtcctgct ggcggtgccg cccgccgact
     1261 tcgtgctgca caactcgctg ttcctgatcg cccacttcca caatgtgatc atcggcggcg
     1321 tgctgttcgg ggccttcgcc ggctacacct actggttccc caaggccttc ggcttccagc
     1381 tgcacgaagg ctggggcaag gccgccttct ggtgctggca gatcggcttc tacgtggcct
     1441 tcctgccgct ctatgtgctg ggcttcctgg gcatgacccg gcggatgcag cactatgacg
     1501 tcgccgcctg gcggccctgg ctgctctacg ccgcggcggg agccgggatc attgcgctcg
     1561 gaatcgcctg ccaggtgatc cagctggtgg tttccatccg ccaccgccgg cggctggccg
     1621 acctcaccgg cgatccctgg gacggccgct cgctggagtg ggccaccgcc tcgccgccgc
     1681 ccaagttcaa cttcgcggtc atgcccgacg tcaccggcga ggagccctac tgggcgatga
     1741 aggaagcggc cttcgcccgc ggcgccctgc gcgacgagcc ggactacgac gtaatcgaaa
     1801 tgccccgcaa cacgccaacc ggggtggtca ccgccttctt cgccacctgc gtgggcttcg
     1861 cgatgatctg gcacatctgg tggctggcgc tgttcgggat cgcaggcgcc ttggcgacct
     1921 tcgtggcctt cgcctggcgc gaccgggcag aggacgtcgt gccggcctat gaggtcgccg
     1981 ccgccgaccg cgccaaccgc gccgcccgcg ccgcgacggt gacccacccg agaggcgcgc
     2041 tgtgaccgtg accgacacct ccgtcccctt cgacccctac aagctcgggc gcggcgcaga
     2101 atccgacgca cgcggccacg gcggcggcgg cccggcgtcg aagc
//
LOCUS       DATAJL010000039         2082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13493,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000039 DATAJL010000000
VERSION     DATAJL010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13493"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VHN39_00650"
     CDS             <1..388
                     /locus_tag="VHN39_00650"
                     /inference="COORDINATES: protein motif:HMM:NF018604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1275 family protein"
                     /protein_id="HEX2814873.1"
                     /translation="CRTQHQHRFGAPSDLLADAWRLHGVICFTGFAMGLRNAVVRKLG
                     ERDLTTTGLTLTLTGLASESVLAGGSNAGWPRRVSSITLMFAGAAAGAWLLRHSVALP
                     LAVSAAVAGACSFLAWFGGGSTDDMG"
     gene            complement(859..>2082)
                     /locus_tag="VHN39_00655"
     CDS             complement(859..>2082)
                     /locus_tag="VHN39_00655"
                     /inference="COORDINATES: protein motif:HMM:TIGR00795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEX2814874.1"
                     /translation="MLIGLGFRPLAAAGLCLIGNTAPVAFGALAAPIIALARVTQLPI
                     EQLSSMVGRQLPFFSLMIPFWLIWTMAGFAGMLEVWPACLVAGVFFAVPQFLVSNYLG
                     PWLVDIIAAASSILALYVLLRFWQPKTNWRFPGEGEGDVARQDRPTPREARTAWMPWI
                     ILSLCVFAWGAPAVRDFFNHISNPTFPVPYLDKMVLRGPPVVTKTGAEGAVFSFNWLS
                     ATGTGLLVSGIISGFFLGLKPGRMGQIYLGTLRRVRYSLLTIAAMLALGFTTRYAGSD
                     ATMGLAFASTGRLFPFFSPLLGWLGVALTGSDTSSNVLFGNLQQITAQQVGVSPVLVA
                     AANSSGGVMGKMIDAQSIVVAGVATGQHGGEGTILRYVFFHSLALACLMGVLVYLQAY
                     VFPGMIPDAPVLPRP"
BASE COUNT          362 a          683 c          736 g          301 t
ORIGIN      
        1 ctgccgcacc cagcatcagc accgcttcgg cgcgccgtcc gacctgctcg ccgacgcttg
       61 gcgcttgcat ggcgtcatct gcttcaccgg ctttgccatg gggctgcgaa acgcggtggt
      121 gcgaaagctg ggggagcgcg acctgacgac cacggggctg acgttgaccc tcaccgggct
      181 ggcgtcggag tcggtgctgg ccggcgggag caatgccggc tggccgaggc gggtctcgtc
      241 gatcacgctg atgtttgccg gcgccgccgc cggcgcgtgg ctcttgaggc attcggtcgc
      301 gctgccgctg gccgtgtcgg cggcggtggc cggagcttgt tcgttcttgg cttggttcgg
      361 gggcggatcc accgatgaca tgggatagat tctggacccc tctacctgcg cggcgctggg
      421 aggcgcaagg cccccccagc gcccaagtcg agcacggcct acctcgacgc gaccagcgac
      481 cccttcgcgg ccttctcgat caggcctgca acggcgcgcg gctgcgagac gtagaccgcg
      541 cagtcggatg acctccgcct gaagctcgat agtatccttg gtcaccacgt ccagcgtcac
      601 gaccgcgcgg ggcccgcggc gaagccagct cgacacggtc gacctgggca cgtccatccc
      661 ttcgagcaga tgcgcgttgc cctcttcgca ggccagctcg cgctgtcggt gatcgtacga
      721 tcgtcggcgg ccggacatgg cctcattcat tgccggaatc cggcagagca caagccggtc
      781 gtccactgga agcagtctga tttcatgcgt gttgcaattg cacgcgccaa ctccaggatg
      841 tcttgatgcg cagcagggct acggccgcgg caggacgggt gcgtcgggga tcatcccggg
      901 gaagacatag gcctgcaggt agaccagcac tcccatcagg cacgccagcg ccaggctgtg
      961 gaagaagacg taacgcagta tcgtcccttc accgccgtgc tgcccggtgg cgacgccggc
     1021 caccacgatg ctctgggcat cgatcatctt gcccatcacg ccgccggagc tgttcgcagc
     1081 ggccaccagt accggcgaga cgcccacctg ctgcgcggtg atctgctgca ggttgccgaa
     1141 cagcacgttg gaggaggtgt cgctgcccgt cagcgccacg cccagccagc cgagcagcgg
     1201 ggagaagaag gggaagaggc gcccggttga ggcgaaggcg agacccatgg tcgcgtcgga
     1261 cccggcgtag cgggtggtga acccgagcgc cagcatcgcc gcgatggtga ggagcgagta
     1321 gcgtacgcgc cgcagggtgc cgaggtagat ctgccccatg cggcccggct tcagccccag
     1381 aaagaagccg gagatgatgc ccgagacgag cagcccggtg ccggtcgccg agagccagtt
     1441 gaagctgaag accgcgccct ccgctccggt cttggtcacc accggcggtc cgcgcagcac
     1501 catcttgtcg agatagggca ccgggaaggt ggggttggag atgtggttga agaagtccct
     1561 caccgccggc gcgccccaag cgaacacgca gagggagagg atgatccacg gcatccaggc
     1621 ggtgcgcgct tcgcgcggcg tgggacgatc ctggcgggca acgtcgccct cgccctcgcc
     1681 cgggaaacgc cagttggtct tcggctgcca gaagcggagc agcacgtaga gcgccaggat
     1741 ggaggaggcg gcggcgatga tgtccaccag ccaggggccg aggtagttgc tgaccaggaa
     1801 ctgcgggacg gcgaagaaca cgccggccac caggcaggcg ggccacacct ccagcatccc
     1861 ggcgaatccc gccatcgtcc agatcagcca aaaggggatc atcagcgaga agaagggcag
     1921 ctggcgcccc accatggagg agagctgctc gatgggcagc tgggtcacgc gcgcgagcgc
     1981 gatgatgggc gcggccaagg cgccgaaggc caccggcgcg gtgttgccga tcaggcacag
     2041 cccggccgca gccagcggac ggaagccgag gccgatgagc at
//
LOCUS       DATAJL010000040         4981 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_39298,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000040 DATAJL010000000
VERSION     DATAJL010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4981
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39298"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..2310)
                     /locus_tag="VHN39_00660"
     CDS             complement(148..2310)
                     /locus_tag="VHN39_00660"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEX2814875.1"
                     /translation="MRNLILAGVSAAALMGAPLMAMAAPAKAHMAKAPAAQAFVNPML
                     EAWTGPYGGYPRFDKVKVADFKPALEEAMALNRREIAAIANNPAAPTFKNTIEALELA
                     GQPLNRVTLIYGGVWGGNLSTPDYQKVQNEMDPKLAAFNDEVVQNPKLFARIEAVYHS
                     PATKKLTPEQQRLAWIYWNNFVRGGAKLDPKAKIRVAAINQRLATLFAKFGQNLQADE
                     AGWITYLKADELAGLPEGLKTAAAQAADEHGHKGEWAITNTRSSMDPFLTYSDNRALR
                     EKVWRNYYSRGDHKDAHDNSAIITEILKLRYERARLLGYPSFAHWKLGDKMVKTPDEA
                     MALMLAVWPSAIARVHQEVADMQAVADKEGAKITIAAWDYRYYAEKVRKAKYDLDNGE
                     VKSYLQLDKIRDAVFWEAGQLYGFTFTKVEGVPVFHPDVTVYEVKKAGQHVGLWYLDP
                     YAREGKNSGAWEQGYRPQSRFLGGQTAIVSNNTNFVKAAPGQPILISWDDGITIFHEF
                     GHALHDLNSSVTYPTQAGTNVATDFVEFPSQLNENWLSTPEILSKFAVNAKGEAIPPE
                     LVAKIRKAATFNQGFDVTEFMASAIYDMKIHLAGGGDIDPDKFEAETFKALGLPSEVV
                     MRHRPTQFAHIFSGDGYAAGYYSYLQSEVLDHDAFEAFLEHGGPYDKAMAKKYHDTIV
                     SVGNTVDPAQAYRNFRGRDPKIDAYLRSKGFPLTPAAK"
     gene            complement(2400..4517)
                     /locus_tag="VHN39_00665"
     CDS             complement(2400..4517)
                     /locus_tag="VHN39_00665"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2814876.1"
                     /translation="MSSKLVLLAAASAGALIATAASAQTTPAAPVAQASEIVVTAQRL
                     DAARSEIEPALGATTYSMPEAFINNLPSGANVQLNQVILQAPGVAQDSFGQLHIRGDH
                     GNIQYRLNNVILPEGLQVFGQSLSPRLAANVDLITGALPAQYGIRDAGIVNITTKSGF
                     KNGGEVGIYGGSHGLIEPSIEYGGSSGATSGFFSGSYTGTDVGIESPDGRGTPLHDHS
                     DQYQAFGYLDHILDATSRVSLIAGTSQDKFQIPNVFGLQPDAGFSQNGVTSIPSEKLN
                     QTQKEGTSYGILTYLKTTEKFTGQASVFVRYSELQYTPDVTGELLFNGIAQAARKTDL
                     SVGTQLEGVYKLNDAHTVRGGVIISVDHTTSKTNSQVFALDDTGAQIGPAAETIIDNS
                     KADQQTYSAYLQDEWKPFGSLTVNYGLRFDQLNAFRHENQLSPRVNVVWTPMEGTTFH
                     AGYARYFSPPPFELVSSESFLKFVGTSAEAPGTQNDLPKSERDNYFDMGVQQKIGGLT
                     LGVDAYDKQAKNLIDEGQFGAPIILTPFNYRMGYARGVEFSANYVAGPLSAYGNFAIS
                     RAQGKDIISSQFNFDPGDLAYIQNHYIFLDHDQTYSASAGVAYRFGEGTRVSGDLIYG
                     SGLRLTPDGAPPNSGHVNGYTQVNLSAAHEFQMAGGPLTLRADVINLFDKEYEIRDGT
                     GVGVGAPQFGPRRGVYAGVSKAF"
     gene            4620..>4981
                     /locus_tag="VHN39_00670"
     CDS             4620..>4981
                     /locus_tag="VHN39_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEX2814877.1"
                     /translation="MKTQRSHEDTMPSRPKARPLAQALRDAEAICAEASEPLTSSRRR
                     VLEILLSAGAPMKAYDIIGAYFGSGRPVSPTTVYRSLEFLERMGFLHRLESVSAYIAC
                     QFDRRGHTAAFLICECCGA"
BASE COUNT          743 a         1541 c         1741 g          956 t
ORIGIN      
        1 ctcggaggcg atggtgacgc cgccgcgcgc cccgcggtgg cgtcaccatc gcctccgagg
       61 gtgacgacgc ttaagcgctc gcacccacca gatagcgaaa ggcccgcgga tcgctccgcg
      121 ggccttttgc tttttcggcg ccgctgacta tttcgccgcg ggcgtcaggg ggaagccctt
      181 ggaccgcaga taggcgtcga tcttggggtc gcggccgcgg aagttgcggt aggcctgggc
      241 cggatcgacg gtgttgccca ccgagacgat cgtgtcgtgg tacttcttgg ccatggcctt
      301 gtcgtagggc ccgccgtgct ccaggaacgc ctcgaaggcg tcgtggtcga gcacctcgga
      361 ctgcaggtag ctgtagtagc ccgccgcgta gccgtcgccc gagaagatgt gcgcgaactg
      421 ggtcggccgg tggcgcatga ccacttcgct cggcaggccc agcgccttga aggtctcggc
      481 ctcgaacttg tcgggatcga tgtcgccgcc gcccgccagg tggatcttca tgtcgtagat
      541 cgcactggcc atgaactcgg tgacgtcgaa gccctggttg aaggtcgcgg ccttgcggat
      601 cttggccacc agctccggcg ggatcgcctc gcccttggcg ttgaccgcga acttggagag
      661 gatttccggc gtcgacagcc agttctcgtt gagctgcgag gggaactcca cgaagtcggt
      721 ggcgacgttg gtgccggcct gtgtcggata ggtcaccgag gaattcaggt cgtgcagggc
      781 atggccgaac tcgtggaata tggtaatccc gtcgtcccag ctgatcagga tcggctggcc
      841 gggcgcggcc ttcacgaaat tggtgttgtt ggagacgatc gccgtctgac cgccgaggaa
      901 ccggctctgc ggccgatacc cctgctccca ggcgccggaa ttcttgccct cgcgcgcata
      961 ggggtcgagg taccacaggc ccacgtgctg gccggccttc ttgacctcgt agaccgtcac
     1021 gtcggggtgg aataccggca cgccctcaac cttggtgaag gtgaagccgt agagctggcc
     1081 ggcctcccag aacaccgcgt cgcgaatctt gtcgagctgc aggtagctct tcacctcgcc
     1141 gttatcgagg tcgtacttcg ccttgcggac cttctcggcg tagtagcggt agtcccaggc
     1201 ggcgatggtg attttggcgc cttccttgtc ggcgacggct tgcatgtcgg cgacctcctg
     1261 gtggacgcgg gcgatggccg agggccagac cgccagcatc agggccatgg cctcgtccgg
     1321 cgtcttgacc atcttgtcgc ccagcttcca gtgggcgaac gacggatagc ccagcagtcg
     1381 ggcgcgctcg tagcgcagct tcaggatctc ggtgatgatc gcggagttgt cgtgggcgtc
     1441 cttgtggtcg ccgcggctgt aataattgcg ccagaccttc tcccgaagcg cccggttgtc
     1501 ggaataggtc aggaacgggt ccatcgagga ccgtgtgttg gtgatcgccc actcgccctt
     1561 gtgcccatgc tcgtcggccg cctgggcggc ggcggtcttc aggccctccg gcaggcccgc
     1621 cagttcgtcg gccttgaggt aggtgatcca gccggcctcg tcggcctgca ggttctggcc
     1681 gaacttggcg aacagcgtcg ccagccgctg gttgatcgcc gcgacccgga tcttggcctt
     1741 ggggtcgagc ttggcgccgc cgcgcacgaa gttgttccag tagatccagg ccagccgctg
     1801 ctgctcgggc gtcagctttt tggtggccgg cgaatggtag accgcctcga tgcgggcgaa
     1861 gagcttcggg ttctggacga cctcgtcgtt gaaggcggcg agcttggggt ccatctcgtt
     1921 ctggaccttc tggtagtcgg gtgtggagag gttccccccc cagacgccgc cgtagatcag
     1981 cgtcacccgg ttcagcggct gaccggccag ctccagcgcc tcgatggtgt tcttgaaggt
     2041 cggcgccgcc gggttgttgg cgatggcggc gatctcgcgc cggttcagcg ccatggcctc
     2101 ctccagcgcc ggcttgaagt cggcgacctt gaccttgtcg aaccgcggat agccgccgta
     2161 ggggcccgtc caggcctcca gcatggggtt cacaaaggcc tgggcggcgg gcgccttggc
     2221 catatgcgcc ttcgcaggag cggccatggc catcagcggc gcgcccatga gggccgcggc
     2281 gctgacgccg gcgaggatga ggttgcgcat cgaggggtca tctcacatct gtggggtgtc
     2341 gggcgcgggg cgccacgtgt tgcccctgtt gtaggcaggc tgaacggctc tgtcagcggc
     2401 tagaacgcct tgctcacgcc ggcatagacg ccgcgccggg gtccgaactg cggcgcgccg
     2461 accccgacgc cggtcccgtc ccggatctcg tactccttgt cgaacaggtt gatcacgtcg
     2521 gcgcgcagcg tcagcggccc gcccgccatc tggaattcgt gcgccgcgct gagattgacc
     2581 tgggtatagc cgttcacatg cccgctgttg ggcggcgccc cgtcgggcgt gagccgcaga
     2641 cccgagccgt agatcaggtc accggacacc cgcgtgccct caccgaatct gtaggcgaca
     2701 cccgccgagg ccgagtaggt ctggtcgtgg tccaggaaga tgtagtggtt ctggatatag
     2761 gccagatcgc ccgggtcgaa gttgaactgg ctggagatga tgtccttgcc ctgggcccgg
     2821 ctgatcgcga agttgccata ggcgctgagg ggtccggcca catagttggc gctgaactcg
     2881 acgccgcggg cgtagcccat ccggtagttg aagggagtca ggatgatcgg ggctccgaac
     2941 tggccctcgt cgatcagatt cttggcctgc ttgtcatagg cgtcgacgcc cagggtcagg
     3001 ccgccgatct tctgctgcac acccatgtcg aagtagttgt cgcgttcgct cttgggcagg
     3061 tcgttctggg tccccggcgc ctcggcgctg gtgccgacaa atttcaggaa ggactccgag
     3121 gacaccagct cgaagggcgg cggcgagaag taacgcgcgt agccggcgtg gaaggttgtc
     3181 ccctccatcg gcgtccagac gacgttcacc cgcggcgaca gctggttctc atggcggaag
     3241 gcgttcagct ggtcgaagcg caggccgtag ttcaccgtca ggctgccgaa cggcttccat
     3301 tcgtcctgca gataggccga ataggtctgt tggtcggcct tgctgttgtc gatgatcgtc
     3361 tccgccgccg ggccaatctg ggcgccggtg tcgtcgagcg cgaagacctg ggagttggtc
     3421 ttgctggtgg tgtggtcgac ggagatgatc acaccgccgc ggaccgtgtg agcgtcattc
     3481 agcttgtaga cgccctccag ctgggtcccg accgacaggt cggtcttgcg cgccgcctgg
     3541 gcgatgccgt tgaacagcag ctcgccggtg acgtcgggcg tgtactgaag ttccgaatag
     3601 cggacgaaga ccgaggcttg gccggtgaac ttctcggtgg tcttcaggta ggtgaggatg
     3661 ccgtagctcg tcccttcctt ctgggtctgg ttcaactttt cggaggggat cgaggtgacc
     3721 ccgttctggc tgaagccagc gtccggctgc aggccgaaga cgttgggaat ctggaacttg
     3781 tcctgcgagg tgccagcgat cagcgagacc cggctggtgg cgtccaggat gtggtcgagg
     3841 tagccgaacg cctggtactg gtcggagtgg tcgtgcagcg gcgtgccgcg gccgtccggg
     3901 ctctcaatgc ccacgtcggt gccggtatag ctgccggaga agaagccgct cgtcgcgccc
     3961 gaggagccgc cgtactcgat cgacggctcg atcaggccat ggctgccgcc gtagatcccg
     4021 acctcgccgc cgttcttgaa tccgctcttg gtggtgatgt tgacgatgcc ggcgtcacgg
     4081 atgccatact gcgcgggcaa ggcgccggtg atcaggtcga cgttggcggc cagccggggc
     4141 gacagcgact ggccgaacac ctgcaggcct tcgggcagga tgacgttgtt cagtcggtac
     4201 tggatgttgc cgtggtcgcc gcgaatatgc agctggccga agctgtcctg cgccacgccg
     4261 ggggcctgaa gaatcacttg attgagttgg acgttggccc cggatggcag gttgttgatg
     4321 aaggcctcgg gcatggaata ggtcgtcgcg cccagcgccg gctcgatctc cgagcgcgcc
     4381 gcgtccagcc gctgggcggt gaccacgatc tcggaggcct gggcgaccgg cgcggcgggc
     4441 gtggtctggg ccgaggcggc ggtggcgatc agggcgccgg cgctcgcggc ggccagcagg
     4501 acaagcttcg acgacatcgc gcaaacctca ggtttggtgt tatgttgtaa catcgctgtt
     4561 atgtgataac ataactatcg tcaaggcgat gcgcggcgcg caggtgtgga aagcggggca
     4621 tgaagacgca gcgtagccat gaggacacga tgccctcgcg cccaaaggcc cggccattgg
     4681 cgcaggcgct gcgcgacgcc gaagcgatct gcgccgaggc gagcgagccg ctgacatcgt
     4741 cgcggcggcg cgtgctcgaa atcctgctct cggcgggcgc gccgatgaag gcctacgaca
     4801 tcatcggcgc ctactttggc tctggccggc cggtctcgcc gacgacggtc tatcgctcgc
     4861 ttgagttcct ggagcgcatg ggcttcctcc accggctgga gtcggtgagc gcctacatcg
     4921 cctgccaatt cgaccggcgc ggccacaccg cggccttcct gatctgcgaa tgctgcggcg
     4981 c
//
LOCUS       DATAJL010000041         5118 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26354,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000041 DATAJL010000000
VERSION     DATAJL010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5118)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5118)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5118
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26354"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..636
                     /locus_tag="VHN39_00675"
     CDS             <1..636
                     /locus_tag="VHN39_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2814878.1"
                     /translation="GHGRTDARRVLGVDLSQPGAANALWDRALADLDGRIDVLVNNAG
                     VFEPIAVDAPADDWASAWDRTLQINLQASADLCRRAVLHWRERAADGSEGGGRIVNVA
                     SRAAYRGDSPAHWHYAASKAGMVAMTKSIARGYASEEILAFAVCPGFTMTGMAEDYLS
                     SRGGEKLLADIPLGRVADPAEVANTVAYLALDAPPSMTGAVLDINGASYVR"
     gene            complement(633..1709)
                     /locus_tag="VHN39_00680"
     CDS             complement(633..1709)
                     /locus_tag="VHN39_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018079736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2814879.1"
                     /translation="MRGLRGVVLGAIAGLMASTCAAAEPPLAPHDFTIRNFQFRSGET
                     LPELKLHYYTLGQPRKDAAGHIVNAVLILHGTGGSGRQFTAPQFADVLFAPGGLLDPA
                     RYFLIMPDDIGHGASSKPSDGLKMKFPHYDYADMVEGEHAIVSQALGIEQLRLVMGTS
                     MGCMHSFLYAEMYPDGARAAMPLACQAVALAGRNRLWRKMSIDAIEADPAWRGGDYAA
                     QPMLGLRGAENLLLLAGQSPWPMQIAMPRGEQVDAWYTAELPKRLASLDANDLIYQLD
                     ASRDYDPSKDLEKIRGPLTWVNSGDDFINPPELGLAQVEVKRIKGGRFVLIPAGPNTH
                     GHGTHTWAVFWKNDLADLLKRSGG"
     gene            1829..2470
                     /locus_tag="VHN39_00685"
     CDS             1829..2470
                     /locus_tag="VHN39_00685"
                     /inference="COORDINATES: protein motif:HMM:NF017269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HEX2814880.1"
                     /translation="MRKNLLLAGLAVAALIPSLAMAQETCEQRSANRTTGTVLGAIGG
                     ALLGNAVSSHGGKTGGTIIGGVAGAAVGSNLAKGPKDCAHAYGYYDNDNRWHDNGVDR
                     AVAYGYYDREGVWVDGQPSVAGYSADASYTSRVNTMDVDTRISRIEDRIQEGRRDGSL
                     SKREARSAENTLNDIRREAQIRHQDGRMSDRDQAALQVRLDRLAAQVHYDKQG"
     gene            complement(2603..2767)
                     /locus_tag="VHN39_00690"
     CDS             complement(2603..2767)
                     /locus_tag="VHN39_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814881.1"
                     /translation="MDLNFELLLILGAVGVVVGLVTAVFSSARVREHGLFGALRRALS
                     GGAGRSPYSI"
     gene            complement(2830..3021)
                     /locus_tag="VHN39_00695"
     CDS             complement(2830..3021)
                     /locus_tag="VHN39_00695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814882.1"
                     /translation="MSLFSWMGAGGVSEADVRSEVWKLGGRHRGEPLAGALEELKAAD
                     LSAERAQLLRACVRILRKG"
     gene            3176..4051
                     /gene="tauD"
                     /locus_tag="VHN39_00700"
     CDS             3176..4051
                     /gene="tauD"
                     /locus_tag="VHN39_00700"
                     /EC_number="1.14.11.17"
                     /inference="COORDINATES: protein motif:HMM:NF007104.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="taurine dioxygenase"
                     /protein_id="HEX2814883.1"
                     /translation="MPVQIVPMTPTIGAVIEGVDLAQPMSDDLLAVVRGALLRHKVIF
                     FEDQRLTPVQHRDFAARFGPLHTHPLYPGVPEAPELFILDNHAGNPTDNDAWHTDITF
                     IETPPMGSILYAKLLPPSGGDTVFSDMKAAYEALSAPLRDFLAGLDAVHDFARGFPTR
                     GRVAGAAGSEKHAQALEEHPPVLHPVVRTHPETGEDGLFVNYGFTERIKGLRRKESDA
                     ILAMLFAHIQQPEFVVRWRWTPNAVAFWDNRVTQHYAVNDYLPHQRIMNRATVLGERP
                     YHRSRMPKEMARAAE"
     gene            complement(4055..4642)
                     /locus_tag="VHN39_00705"
     CDS             complement(4055..4642)
                     /locus_tag="VHN39_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEX2814884.1"
                     /translation="MNSICVYCGSAPGNDPAFHAEAVAAGTLIARQGLTLVYGGGKVG
                     LMGAVADAALAAGGKVIGVMPADLVNQEIGHKGLTELKIVNSMHERKWAMAELADGFL
                     CLPGGPGTFEEIFEQWTWALLGFHAKPCGFVNVSGYYDPMRATVQQMADKGFLAQQYV
                     DMLVYAETTIEAIEAFRAYVPPPPKWGVAAVEQRY"
     gene            4827..5018
                     /locus_tag="VHN39_00710"
                     /pseudo
     CDS             4827..5018
                     /locus_tag="VHN39_00710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518078.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0001072 - transcription antitermination
                     factor activity, RNA binding [Evidence IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
BASE COUNT          838 a         1766 c         1711 g          803 t
ORIGIN      
        1 ggccatgggc ggaccgacgc gcggcgcgtt ctgggggtcg acctttccca gcccggcgcg
       61 gccaacgcgc tctgggaccg ggcgctcgcg gacctggacg ggcggatcga cgtgctggtg
      121 aacaacgccg gcgtcttcga gccgattgcc gtggacgcgc cggcggatga ctgggcttcg
      181 gcctgggatc gcaccctgca gatcaacctg caggcctccg ctgacctctg ccggcgcgcg
      241 gtgctgcact ggcgcgagcg ggcggcggac ggaagcgagg gcggcggacg gatcgtcaat
      301 gtcgccagcc gcgcggccta tcgcggcgat tcgcccgccc actggcacta cgcggcctcc
      361 aaggccggca tggtggccat gaccaagtcc atcgcccgcg gctatgcgtc cgaagaaatc
      421 ctggccttcg ccgtctgccc gggcttcacc atgaccggga tggccgagga ctatctgtcg
      481 agccgcggcg gcgagaagct cttggcagat atcccgctcg gccgcgtggc ggacccggcc
      541 gaggtggcca acaccgtggc ctacctggcc ctcgacgccc cgccctcgat gaccggcgcc
      601 gtgctggaca tcaatggcgc gagctacgtt cgctaacccc ccgaacgctt caagaggtcc
      661 gccaggtcgt tcttccagaa caccgcccag gtatgggtgc cgtggccgtg ggtgttgggg
      721 ccggcaggga tcagcacgaa ccggccgccc ttgatgcgct tcacttccac ctgcgccagg
      781 cccagctccg gcgggttgat gaagtcgtcg ccggaattca cccaggtgag cgggccccgg
      841 atcttctcca ggtccttcga cgggtcgtag tcccgcgagg cgtcgagctg gtagatcagg
      901 tcgttggcgt cgaggctggc cagccgcttg ggcagctcgg ccgtgtacca ggcgtcgacc
      961 tgctcgcctc tgggcatggc gatctgcatg ggccagggcg actggccggc cagcagcagc
     1021 aggttttccg ccccgcgcag gcccagcatc ggctgggcgg catagtcgcc gcccctccac
     1081 gccggatccg cctcgatggc gtcgatggac atcttgcgcc acagccggtt gcggccggcc
     1141 agcgccacgg cctggcaggc cagcggcatg gccgcccgcg cgccgtccgg atacatctcg
     1201 gcgtacagga agctgtgcat gcagcccatc gaggtgccca tcaccaggcg cagctgctcg
     1261 atccccaggg cctggctgac gatggcgtgt tcgccctcga ccatgtcggc gtagtcgtag
     1321 tgggggaact tcatcttgag gccgtcggag ggcttcgaag acgcgccatg gccgatgtcg
     1381 tcgggcatga tcaggaagta cctggccgga tcgagcaggc cgcccggggc gaacagcaca
     1441 tcggcgaact gcggggctgt gaactgacgg cccgagccgc cggtgccgtg caggatcagg
     1501 acggcgttga cgatgtggcc ggcggcgtcc ttccgcggct ggcccagggt gtaatagtgc
     1561 agcttcagct ccggcagtgt ctcgcccgag cggaattgga aattgcggat ggtgaagtcg
     1621 tgcggcgcaa gcggcggctc cgccgccgca caggtcgacg ccatcaggcc agcgatcgcc
     1681 cccaaaacaa ctccgcgaag tccgcgcatg ctcaagctcc cctgccgcgc caacagccta
     1741 atcgcctccg ggtcaatccg gaacctccgc gctctcgctt acgttgaggg cgcctaggga
     1801 cagttattcc caccaggaga catccatcat gcgtaagaac cttctgctcg ccggcctcgc
     1861 cgtcgcagct ctcatcccct cgctcgctat ggcgcaggaa acctgcgaac agcgcagcgc
     1921 caaccgcacc accggcaccg tgctgggtgc gatcggcggc gctctgctgg ggaatgctgt
     1981 gtccagccat ggcggcaaga ccggcggcac catcatcggc ggcgtcgccg gcgcggcggt
     2041 cggtagcaac ctggccaagg gcccgaagga ctgcgcccac gcctatggct actacgacaa
     2101 tgacaaccgc tggcacgaca acggtgtcga tcgcgccgtg gcctatggct actacgaccg
     2161 tgaaggcgtt tgggtcgacg gccagccgag cgtcgccggc tatagcgccg acgcgtccta
     2221 caccagccgc gtgaacacca tggacgtgga cacccggatc agccggatcg aggaccggat
     2281 tcaggaaggc cgccgcgacg gcagcctgtc gaagcgcgaa gccaggagcg ccgagaacac
     2341 gctcaacgac atccgccgcg aggcgcagat ccgccaccag gacggccgca tgagcgaccg
     2401 cgaccaggcc gccctgcagg tgcgcctcga tcgcctggcg gctcaggttc actacgacaa
     2461 acagggctaa tagcgtcctg agaccctgac ggaccggcta cgggtccaac tcatcaggcc
     2521 ctcggctcac gccgggggtc ttttggtgtc tggcatacgg aagggccgga tgtccgccgg
     2581 ccccagttcg gcgtcggggg cgtcagatgc tgtaaggact gcgcccggcg ccgccggaaa
     2641 gggccctgcg cagtgcgccg aacaggccgt gttcccgcac ccgtgcgctg gagaataccg
     2701 cggtcacgag gccgacgacc acgccgaccg ctccgaggat cagcagcagt tcaaaattca
     2761 ggtccatgag ggttaataga cgctcaagct tgctcgaaac caagctacgt tttcgcctca
     2821 ggggcgcatt cagcccttgc ggagaatccg cacgcaggcc cgtagaagtt gagcccgttc
     2881 agcgctcagg tcggcggcct tgagctcctc gagcgcgccc gccagcggct cgccgcgatg
     2941 acgcccaccg agcttccaga cctcggagcg gacatcagcc tcgctgacgc cgcccgcgcc
     3001 catccaggaa aacagactca tgccggcctt tcatgatcgc gggtggccct ggggctcgaa
     3061 ggccccctgc gccgcgacat gtcggcatcc tagcacgtct cgcctgatgc gcggactttg
     3121 acgcgcgcgt ccgaatggcg ttggctttgc cgcgctcagt ccggaggccg ccgccatgcc
     3181 cgtccagatc gtcccgatga cccccacgat cggcgccgtg atcgagggcg tcgacctggc
     3241 ccagccgatg tccgacgacc tgctggccgt cgtccgcggc gcgctcctgc gccacaaggt
     3301 gatcttcttc gaggaccagc ggctgacgcc ggtgcagcac cgcgacttcg ccgcgcgctt
     3361 cgggccgctg cacacccatc cgctctatcc gggcgtgcct gaggcgccgg agctgttcat
     3421 cttggacaac cacgccggca accccacgga caacgacgcc tggcacaccg acatcacctt
     3481 catcgagacc ccgcccatgg gctcgatcct ctacgccaag ctcctgccgc cttccggagg
     3541 cgacacggtg ttttcggaca tgaaggcggc ctatgaggcg ctctcggcgc cgctcaggga
     3601 cttcctcgcg ggcctggacg ccgtccacga cttcgcccgg ggctttccaa cgcgcgggcg
     3661 ggtggccggc gcggcggggt cggagaagca cgcccaggcg ctggaagagc atccgccggt
     3721 gctgcatccg gtggtccgca cccatccgga gaccggcgag gacggcctct tcgtcaacta
     3781 cggcttcacc gagcggatca agggcctgcg gcgcaaggag agcgacgcga tcctggccat
     3841 gctgttcgcc cacatccagc agccggagtt cgtggtccgc tggcgctgga cgcccaacgc
     3901 ggtggcgttc tgggacaacc gggtgacgca gcactatgcg gtcaacgact acctgcccca
     3961 ccagcggatc atgaaccgcg ccaccgtgct gggcgagcgg ccctatcacc gctcgcggat
     4021 gcccaaggaa atggctcggg cggcggagta ggccctagta ccgctgctcg accgcggcca
     4081 cgccccattt gggcggcggc gggacgtagg cgcgaaaggc ctcgatcgct tcgatggtgg
     4141 tttcggcgta gaccagcatg tcgacgtatt gctgggcgag gaaccccttg tcggccatct
     4201 gctgcacggt ggcgcgcatc gggtcgtagt agccggagac attgacgaag ccgcagggct
     4261 tggcgtggaa gcccagcagg gcccaggtcc actgctcgaa gatctcttcg aaggtgccgg
     4321 ggccgcccgg caggcacaga aagccgtcgg ccaactcggc catggcccat ttgcgctcgt
     4381 gcatggagtt gacgatcttg agctcggtca gacccttgtg accgatctcc tgattgacca
     4441 ggtcggcggg catgacgccg atcaccttgc cgccggcggc gagcgcggcg tcggcgacag
     4501 cgcccatcag gcccaccttg ccgccgccat agaccagcgt caggccctgc cgggcgatca
     4561 gcgtgcccgc ggcgaccgct tcggcatgga aggccggatc gttaccgggg gccgacccgc
     4621 aatagacaca gatactgttc aaggggcgtc ttcccgccgt caggatgatc aaatgggggc
     4681 gctccaatag tccgattgcg cgcttatgtc acggtgcggc tggtctaccg gcttttcgcc
     4741 cgctacatag ctttcacggc tcgccaaaag gcggccgggc gccgcagttg tggggtgcaa
     4801 gactctatct tggttaggtc aggcgaatgg cgagcggcac ggtcaagtgg ttcaataccg
     4861 ctaagggctt tggtttcatc caaccggacg acggcggaag cgacgtcttc gtccacatct
     4921 cagcggtcga acaggcaggc cttcgcggcc tgaatgaagg cgatctggtc aatttcgaac
     4981 tcgagcagga ccgacggtcc ggcaagcttt cggccggcca gctggtggtc acgggccagg
     5041 gcgcggctcc gccgcgcacc ggcggtggcg gcggcggctt tgaccggccg cgccctggcc
     5101 cgtgaccacc agctggcc
//
LOCUS       DATAJL010000042         4082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_608,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000042 DATAJL010000000
VERSION     DATAJL010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4082
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VHN39_00715"
     CDS             complement(<1..224)
                     /locus_tag="VHN39_00715"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2814885.1"
                     /translation="MLYRPLGRTGLSISEIGFGAASWWGKRQFNEIRAARLVDAAIAG
                     GVTFFDTGSSYSGGNAEPRLGRVLKGRDASG"
     gene            complement(230..1663)
                     /locus_tag="VHN39_00720"
     CDS             complement(230..1663)
                     /locus_tag="VHN39_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HEX2814886.1"
                     /translation="MTAITADADDRAFLGHPKGLAYLSITEAFERFSYYGMIALLVLY
                     MNGQLLKPGHVEHVVGLSVLRPILEAVFAGGAHYSNQQLSSAIYLVYSSTVYLTPLLG
                     GLIADRVGRTGTIIVGASIMAIGHFLMAFDGSFLLALVCLMIGAGCLKGNIATQVGAL
                     YAAGDTRRADGFQVFYLGINGGVIFGPLITGYLGQGIAWHYGFGAAGVAMVIALLIYL
                     SGLKRLPPDPPRGATARAEKVARPALTKREVAVLALLALILPVLSLSIVGNNQIYNGY
                     LVWAQANADLHFLGINILTSQMLSVDSIVSVATLIGMVMFWRAWKTRFPEPDELGKIA
                     IGCFFGAAGVACLAAGAALTPAGQKVSFNWLLAFHLLNDIGFSNVLPVGLALFSRAAP
                     KAIAGMVIGFYYLHLWAGNILVGFLGTLYEKMTPVQFWMIHVAMVGGAGVIFVVVKLL
                     FGRLLLASEDSELDMSTVAIADAGEMP"
     gene            complement(1727..2584)
                     /locus_tag="VHN39_00725"
     CDS             complement(1727..2584)
                     /locus_tag="VHN39_00725"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2814887.1"
                     /translation="MIAVGANAEPASLDDYMKQAPHKADDTVHYGPAPSQVADLFLPK
                     TKGPHPVVVLLHGGCFLKQYEGFPQTSALAADLAARGYAVWNVEYRKLGEPGAGYPGT
                     FQDVATAVDRLRTEGPKYGLDLRRIIAIGHSAGGHLALWAASRGKLPAGSPLRTAAPL
                     PIGAVISLAGIGDLSGQGKVFALPCGDDTIDRLVDTANRRNPFADTSPAELLPTGAKV
                     VMVHGVFDSVMPPYTGRDYAARVRKAGDAAEVVVIPGAAHFDLVIPTTPAWKQVVAIL
                     DRETKALAH"
     gene            complement(2626..2865)
                     /locus_tag="VHN39_00730"
     CDS             complement(2626..2865)
                     /locus_tag="VHN39_00730"
                     /inference="COORDINATES: protein motif:HMM:NF013691.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEX2814888.1"
                     /translation="MKYDYILQSEADAQRYYVGVTGDLRDRLRRHNAGDASHTSKYLP
                     WRVKTYVALSDEARAMAFERYLKTASGRAFATKRL"
     gene            complement(2992..3068)
                     /locus_tag="VHN39_00735"
     tRNA            complement(2992..3068)
                     /locus_tag="VHN39_00735"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3032..3034),aa:Val,seq:tac)
     gene            complement(3124..4032)
                     /locus_tag="VHN39_00740"
     CDS             complement(3124..4032)
                     /locus_tag="VHN39_00740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814889.1"
                     /translation="MIARSRTLDRRRAIWLGAAFGAACRAPQARAAPPAAYGAFGPSQ
                     DVVIRGYAGDAMEPFLSRDGRWLLFNNRNDPGVNTDLHCAEQIDDLNFAWRGPIIGAN
                     GPALDAVASMDRKGWLYFISTRSYGRTFSTLYRARFTDGRAESVELVEGVSRAKPGWV
                     NFDAEISASGERLYLVESWFGAKGQPQQADITVAERVGRTFTIRPDAGRLFDRVNASG
                     LNYAPSTTADELELFFTRAPAPLGSSPPGIWRAARQSARDPFQAPQRVAAIEGFAEGS
                     TLSPDGRGLYYHARIGQRFAIRRVAR"
BASE COUNT          721 a         1368 c         1370 g          623 t
ORIGIN      
        1 ccggacgcgt cgcgcccctt gagcactcgg ccaaggcgcg gctcggcgtt gccgcccgag
       61 tagctcgagc cggtgtcgaa gaaggtgacg ccgccggcga tcgcagcgtc caccaggcgg
      121 gctgcgcgta tctcgttgaa ctgtcgttta ccccaccagc tcgccgcccc gaacccgatc
      181 tcggagatgc tcagacccgt gcggcccagc gggcggtaga gcatgtcggc tacggcatct
      241 cgcccgcgtc ggcgatcgcc acggtgctca tgtccagctc cgagtcctcg ctcgccagca
      301 gcaggcgacc gaacaacagc ttgaccacca cgaagatcac gccggcgccg ccgaccatgg
      361 ccacgtggat catccagaac tgcaccggcg tcatcttctc atagagggtg ccgagaaagc
      421 ccacgaggat gttccccgcc cagaggtgca aatagtagaa gccgatcacc atgcccgcga
      481 tggccttggg cgcagcccgc gaaaacagcg caagaccgac cggcaggacg ttagagaacc
      541 cgatgtcgtt cagcagatgg aaggccagca gccagttgaa gctgaccttc tggccagccg
      601 gcgtcagcgc cgcgcccgcc gccaggcagg ccacgccggc cgctccgaaa aagcagccga
      661 tggcgatctt gccgagttcg tccggctctg ggaaccgggt cttccaggcc cgccaaaaca
      721 tcaccatgcc gatcagggtg gcgacggaga ctatggagtc caccgacagc atctggctgg
      781 tcaggatatt gatgcccagg aagtgcaggt ccgcattggc ttgggcccac accaggtagc
      841 cgttgtagat ctgattgttg ccgacgatcg acaaggacag caccggcagg atgagggcca
      901 gcagcgccag cacggccacc tcgcgtttgg tcagcgcggg ccgcgcaacc ttctccgccc
      961 tggccgtggc gccgcgcggg ggatcgggcg gcaggcgctt gaggccggaa agatagatca
     1021 gcagggcgat caccatggcc acgcccgccg cgccgaagcc gtagtgccag gcgatgccct
     1081 ggccaaggta accggtgatc agcggcccga agatcacgcc gccgttgatg cccaggtaga
     1141 aaacctggaa gccatcggcg cggcgggtgt cgccagcggc atagagcgca cccacctggg
     1201 tggcgatgtt gcctttcagg cacccggcgc cgatcatcag gcagaccaac gccagcagga
     1261 acgacccgtc gaacgccatc agaaagtggc cgatcgccat gatgctcgcc ccgacgatga
     1321 tcgtcccggt ccgcccgacc cggtcggcga tcagcccgcc cagcaggggg gtcagataga
     1381 ccgtgctcga atagaccagg taaatcgccg aggagagttg ctggttcgaa tagtgcgcgc
     1441 cgcccgcgaa cacggcctcc aggatgggac gcaggacgct cagcccgacc acatgctcga
     1501 cgtggcccgg cttcagcagt tggccgttca tgtagagcac cagcagcgcg atcatcccgt
     1561 agtaggagaa gcgctcgaag gcctcggtga tggagagata ggccagcccc ttggggtggc
     1621 ccaggaaggc acgatcgtct gcgtcagcgg tgatggcggt catggaatcc ttccccaagg
     1681 ccgggaagat aggcacgaaa tctccgcgac tgggaagccg cctcgttcag tgggcaagcg
     1741 ccttcgtctc gcggtcgagg atggccacga cctgcttcca ggccggcgtc gtcgggatca
     1801 ccaggtcgaa gtgggcggct ccggggatga ccacgacttc ggccgcgtcg cccgctttgc
     1861 gcacccgcgc agcgtagtcg cggccggtgt agggcggcat gacggaatcg aagaccccgt
     1921 ggaccatcac caccttggcg ccggtgggca acagctcggc cggcgaggtg tcggcgaagg
     1981 ggttgcgacg gttggcggtg tcgaccagcc ggtcgatggt gtcgtcgccg caaggcaggg
     2041 cgaagacctt cccctgcccg ctcaggtcgc cgatgcccgc caggctgatg acggcgccga
     2101 tcggcagcgg ggcggcagtg cgcagcgggc ttcccgctgg cagcttgccg cggctcgcag
     2161 cccacagcgc caggtggccg cccgccgagt ggccgatggc gatgatccgg cgcaggtcca
     2221 ggccatattt cggcccctcg gtccgcaggc ggtcaacggc ggtcgcgacg tcctggaagg
     2281 tgccggggta gccggcgccc ggctctccca gcttgcggta ctcgacgttc cagacggcgt
     2341 agccgcgcgc ggcaaggtcg gcggccagcg cgctggtttg cggaaagccc tcatactgct
     2401 tcaggaaaca accgccgtgc agcagcacca cgaccggatg cgggcccttt gtctttggca
     2461 ggaacagatc ggccacctgc gacggcgcgg ggccgtaatg gaccgtgtcg tccgccttat
     2521 gcggggcctg cttcatatag tcgtcgaggg aggctggctc agcattggcc ccgaccgcga
     2581 tcatgctcaa gaccatcgcc cacctgatca ctgcacgcac ctcggctaaa gtctcttcgt
     2641 cgcgaaggcg cggccagagg ctgtcttcag atatcgctcg aaagccatag cccgcgcttc
     2701 atcgctaagc gcgacgtagg tcttcacccg ccatggaaga tatttggatg tgtgactggc
     2761 gtcgcctgcg ttgtggcgtc gaagccgatc tcgaaggtca cccgtcacac cgacgtagta
     2821 ccgctgcgcg tcggcttcgc tttgcaggat gtagtcatac ttcatcgtcc gcgccttatc
     2881 ctggaggttc gcccagagac gcggtagcgc gccttcgctg cgcttcggcg cggcaacctt
     2941 cgcgcggtta gctggcctgc cgagccgaag cgcggttcaa cgcgcgaagg ctggtgggcg
     3001 gcgagggatt cgaacccccg accctctcgg tgtaaacgag atgctctaac cagctgagct
     3061 agccgcccta ggactggggg ttctagacca cgccgcgcgc cgcaaaaagc atccaggcgc
     3121 cgatcagcgc gcgacgcgtc ggatcgcgaa ccgctgaccg atcctggcat ggtaataaag
     3181 gccgcgtccg tcgggcgaga gggtcgagcc ctcagcaaaa ccctcgattg ccgccacacg
     3241 ctgcggcgcc tggaaggggt cgcgcgccga ttggcgggcc gcgcgccaga taccgggcgg
     3301 tgatgagccg aggggcgcgg gcgcgcgggt gaagaaaagc tccagttcgt cggccgtcgt
     3361 gctcggcgcg tagttcagcc ccgaagcgtt cacccggtcg aacagccgcc ccgcgtcagg
     3421 ccggatcgtg aaggtccggc cgacccgctc cgcgaccgtg atgtccgcct gctgcggctg
     3481 ccccttggcg ccgaaccagc tctccaccag gtagagccgc tccccgctcg ccgagatctc
     3541 cgcatcgaaa ttcacccaac ccggcttggc ccgcgatacg ccctcgacca gttcgacgct
     3601 ctcggcgcga ccgtcggtga agcgggcccg gtagagggtc gagaaggtcc ggccatagct
     3661 gcgcgtggag atgaaataga gccagccttt ccggtccatc gaggccaccg catccagagc
     3721 cgggccgttg gcgccgatga tggggccgcg ccaggcgaag ttgaggtcgt cgatctgctc
     3781 tgcacagtgc aggtcggtgt tcacgccggg gtcgttgcga ttgttgaaca gcagccagcg
     3841 gccgtcgcgg ctgaggaagg gctccatggc gtcgccggca tagcccctga tgacgacgtc
     3901 ctgagagggg ccgaaagccc cgtaggccgc cggcggcgct gcgcgcgcct gaggcgcgcg
     3961 acacgccgcg ccgaaggccg ctcccagcca gatggcgcga cgacgatcga gggtcctgct
     4021 ccgcgcaatc aacagacgac ccccgttggg cgttcaggcc gcgtctctcc gaatctgagg
     4081 ct
//
LOCUS       DATAJL010000043         6753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_116292,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000043 DATAJL010000000
VERSION     DATAJL010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6753
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116292"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VHN39_00745"
     CDS             complement(<1..239)
                     /locus_tag="VHN39_00745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814890.1"
                     /translation="MTGTFRIRSLAQPEARQAATALAAVLADCVWGGASVSFMDDMTL
                     AEAEAFWREETAADDGRAILVAEDDEGVFGVVQVIP"
     gene            complement(297..1757)
                     /locus_tag="VHN39_00750"
     CDS             complement(297..1757)
                     /locus_tag="VHN39_00750"
                     /inference="COORDINATES: protein motif:HMM:NF019157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HEX2814891.1"
                     /translation="MRRLLFAAGAAMALAAPFAAHAETACADLTQAKLVHAEVTATKV
                     ETTKSGQACRLSVTSRPTSDSEIKIEVMIPIGAAWNGKFVQVGNGGLAGSIPSAVIKG
                     RADAGWASAGTDDGHGGNGRTAIWALGHPEKIKDFGTRSLKDTTDAAKALIVAMKGSP
                     ATRSYFVGCSAGGREALMEAQRFPGDFDGIVAGATANYNTLSTGGRAYMQQALARPGG
                     YLDTAQLQLLQTAALKQCADGGPFIRDQMACHFDPSVLKCKAGQTENCLTAPQLSSAK
                     AIYGGRMVGGKSMFPGYMPGAEAARGGWQAWNTGTSKATYEESSGHAISSQFLKYFVY
                     DDPSFDFLKMDLGPKYDRDRMKTSAVLDAVNPDLNPFKKHGGKLIQYHGWNDPAIPPL
                     GSIRYYGEVNRKMGQTGDFYRLYMIPGMLHCQGGAGPGTVDWLGVLDHWVEAKAAPAE
                     LTATGPSGASQMLCPYPSVAKKAGDGWACSVAKTKG"
     gene            complement(1760..3253)
                     /locus_tag="VHN39_00755"
     CDS             complement(1760..3253)
                     /locus_tag="VHN39_00755"
                     /inference="COORDINATES: protein motif:HMM:NF019157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HEX2814892.1"
                     /translation="MKSTTLALAAMSVSLLALGAPAAAHAETACADLVKTVLPHAEVT
                     KAVSEKVGDKQVCKVSVTSRPTKDSDIRLELWIPEGAAWNGKFVQVGNGGFAGSIPRV
                     SFNGPVKAGYAVAGTDDGHQDPVGTNASWALGHPEKVIDFGWRALKETTDASKALIVA
                     MKGGKIARSYFAGCSDGGREALMEAQRYPTDFDGIVAGAPANYMSQLFGLSAFQQQTM
                     AKAGGYLAAPQRELLQKTVLAECGGETFIRDPMACHFDPGRLACKAGQTDGCLTAPQV
                     TSARAFYDGRRDKTGKVVFPGYSPGAESLNGSWNAWITGPNAETNQKAAGPSFSSNAF
                     KYFGFEDANFDYLKMDMGSPFQGAMKKMAAVLDSPDPNLAAFQKHGGKLIQYHGWNDP
                     AIPPRSSVVYYEDVRKTMGDPSGFYRMYLIPGMLHCAGGVGPSGVDWVALLDAWVIDK
                     KAPGDVTAMAGPGQGVGGPPSQVLCPFPGVAKKSGETWACSVPKKKG"
     gene            complement(3383..4702)
                     /locus_tag="VHN39_00760"
     CDS             complement(3383..4702)
                     /locus_tag="VHN39_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2814893.1"
                     /translation="MTMTADRAESSFALNPMDDLNDLRMSAKAMPLLEKVKTFIKDVV
                     EPMSEEFHRLGEGNPDIWSYAPGQLECLEAAKDKAKAAGLWNFFLPNAETGEGLSNLD
                     YAYIAVELGKNRLASETMNCAAPDTGNMEVLERVGTPEQKKQWLEPLLEGKIRSAFAM
                     TEVNAASSDAKNINTRATLVGDEYVINGEKHYISGAGDPRCKIMITMVQTSPDGPPAL
                     RQSQILVPTDAPGVKILGPMNVFGDPDAPHGHMHILFDNVRVPASNMLLGEGRGFEIS
                     QLRLGPGRIHHCMRAIGSAEKALDLMVTRGLTRTAFGKPLVQLGGNLEIISRARIDIE
                     AMRLMVLKAAKAMDVLGNQEARVWIHMVKAMVPEKVCQIIDQAIQMHGALGVSQKTPL
                     ARMYTSTRTLRIADGPDEVHHMVVGRNELRQYREMPSDAGETSIFRH"
     gene            complement(4968..5393)
                     /locus_tag="VHN39_00765"
     CDS             complement(4968..5393)
                     /locus_tag="VHN39_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814894.1"
                     /translation="MRRALALAALIATSAAALATAGSAFAEHWTKFADGANGIEWSYD
                     ADYSYKDKQTGRLVVMQAISKPSANLMPSGPDKGVGSVYAIDCGKKNVIMMGAFKPST
                     APFSTVNGWRGETPKNLGGPEDTALLAAVCPNIDHVPVK"
     gene            5662..5952
                     /gene="groES"
                     /locus_tag="VHN39_00770"
     CDS             5662..5952
                     /gene="groES"
                     /locus_tag="VHN39_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEX2814895.1"
                     /translation="MAFRPLGDRVLVKRVEEEEKTKGGIIIPDTAKEKPQEGEIVSVG
                     PGARDDSGKIQPLDVKKGDKILFGKWSGTEIKLDGQDLLIMKESDVLGVLEA"
     gene            6006..>6753
                     /gene="groEL"
                     /locus_tag="VHN39_00775"
     CDS             6006..>6753
                     /gene="groEL"
                     /locus_tag="VHN39_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEX2814896.1"
                     /translation="MAAKDVFFASDARDRMLRGVNILANAVKVTLGPKGRNVIIEKSF
                     GAPRSTKDGVTVAKEIELSDRFENLGAQLIREVASKTNDKAGDGTTTATVLAQAIVVE
                     GLKSVAAGMNPMDLKRGVDKAVAKVVEEIKNSSRKVTTNEEIAQVGTISANGDVEVGA
                     MIAKAMAKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFVTDPERMEVVLQDP
                     YILIHEKKISSMKDLLIMKESDVMGVIEGAI"
BASE COUNT         1115 a         2232 c         2238 g         1168 t
ORIGIN      
        1 ggaatcacct gcaccacgcc gaagacgccc tcgtcgtcct cggccaccag gatcgcccgc
       61 ccatcgtccg cggcggtctc ctcgcgccag aaggcctcgg cctcggcgag ggtcatgtcg
      121 tccatgaagc tcaccgaggc gccgccccag acacagtcgg cgaggaccgc ggcgagcgca
      181 gtcgccgcct ggcgcgcttc tggctgggcc aggctgcgta tgcggaaggt cccggtcatg
      241 tgaacggcgt tcgcttacac ccgcgaaggc cgcacagcaa cgcttggcgc gtctgcctac
      301 cccttcgtct tcgccaccga acaggcccag ccgtcgccgg ccttcttcgc cacgctcgga
      361 tagggacaga gcatctggct cgcgccactg ggccccgtgg ccgtgagttc ggcgggcgcg
      421 gccttggcct cgacccagtg gtccagcacc cccagccagt ccaccgtccc ggggccggcg
      481 ccaccctggc agtgcagcat cccggggatc atgtagagcc ggtagaagtc gccggtctgg
      541 cccatcttcc ggttcacttc gccgtagtag cggatggagc ctagcggcgg gatcgcgggg
      601 tcattccagc catggtactg gatcagcttg ccgccatgct tcttgaacgg gttcaggtcc
      661 gggttgaccg cgtccagcac ggccgaggtc ttcatccggt cgcgatcgta cttcgggccc
      721 agatccattt tcaggaagtc gaacgacggg tcgtcgtaga cgaaatactt caggaactgc
      781 gacgagatcg catgaccgga ggactcctcg taggtcgctt tcgaggttcc ggtgttccag
      841 gcctgccagc cgccgcgggc cgcctcggcg ccgggcatat agcccgggaa catcgacttt
      901 ccgccgacca tccggccgcc atagatcgcc ttggctgacg agagctgcgg ggcggtgagg
      961 caattctccg tctggcccgc cttgcacttc agaacgctcg gatcgaagtg acaggccatc
     1021 tggtcgcgga tgaacggccc accgtcggcg cattgcttca gcgccgcggt ctgcagcagc
     1081 tgcagctgcg ccgtgtcgag atagccgccg ggcctggcga gcgcctgctg catataggcc
     1141 cgcccgccag tcgacagcgt gttgtagttg gccgtggcgc cggcgacgat gccgtcgaag
     1201 tcgcccggga agcgctgcgc ctccatcagg gcctcacgcc cgccggctga acagcccacg
     1261 aagtacgacc gggtcgcggg cgatcccttc atggccacga tcagcgcctt ggccgcgtcg
     1321 gtggtgtcct tcagcgagcg ggtcccgaag tccttgatct tctccggatg gccgagcgcc
     1381 cagatcgctg tgcggccatt gcccccgtgg ccgtcgtcgg tgccggccga ggcccagccg
     1441 gcgtcggcgc ggcccttgat cacggccgac gggatagacc cagccaggcc accgttgccg
     1501 acctggacga acttgccgtt ccaggccgcg ccgatcggga tcatcacctc gatcttgatc
     1561 tcgctgtcgg aggtcgggcg gctggtcacc gacaggcggc aggcctggcc ggacttggtg
     1621 gtctcgacct tggtcgcggt cacctcggcg tggaccagct tggcctgagt gaggtcggcg
     1681 caggcggttt cggcatgcgc ggcaaaaggc gccgccaacg ccatcgcggc gccggcggca
     1741 aacaggaggc gcctcacctt cagccctttt tcttgggaac gctgcaggcc caggtctcgc
     1801 cggacttctt ggcgacgccc gggaaggggc agagcacctg gctcggcggc ccaccgacgc
     1861 cctgacccgg acccgccatc gcggtcacgt cgcccggcgc cttcttgtcg atcacccagg
     1921 cgtccagcag cgccacccag tcgacgccgc tcggcccgac gccgccggcg cagtggagca
     1981 tgccggggat caggtacatc cggtagaagc ccgagggatc gcccatggtc ttgcggacgt
     2041 cctcgtaata gacgaccgac gagcgcggcg ggatcgcggg gtcgttccag ccatggtact
     2101 ggatcagctt gccgccatgc ttctggaaag ccgccaggtt cgggtcgggc gagtccagca
     2161 ccgcggccat cttcttcatc gcgccctgga acggggagcc catgtccatc ttcaaatagt
     2221 cgaagttggc atcctcgaag ccgaagtatt tgaaggcgtt tgacgagaac gacgggccgg
     2281 cggccttctg gttggtctcc gcgttcgggc cggtgatcca ggcgttccag ctgccgttca
     2341 gggactccgc gccggggctg tagccgggga agacgacctt gccggtcttg tccctgcggc
     2401 catcgtagaa ggccctggcc gaggtcacct gcggcgcggt caggcaaccg tccgtttgcc
     2461 cggccttgca ggcgagcctg cccggatcga agtggcaggc catcgggtcg cggatgaagg
     2521 tttcgccgcc gcattcggcc agcaccgtct tctgcagaag ctcgcgctgc ggcgcggcga
     2581 ggtagccgcc tgccttggcc atggtctgct gctggaaagc cgacaggccg aacagctggc
     2641 tcatgtagtt ggccggcgcg ccggcgacga tgccgtcgaa gtcggtgggg tagcgctgcg
     2701 cctccatcag cgcctcgcgc ccgccgtcgg agcagccggc gaagtaggac ctggcgatct
     2761 tgccgccctt catggcgacg atcagcgcct tggaggcatc ggtggtctcc ttcagcgcgc
     2821 gccagccgaa gtcgatgacc ttttccgggt ggccgagcgc ccaggaggcg ttggtgccga
     2881 ccgggtcctg gtggccgtcg tcggtgccgg ccaccgcata gccagccttg accgggccgt
     2941 tgaaggagac ccggggaatg gagcccgcga acccgccgtt gccgacctgg acgaacttgc
     3001 cgttccaggc cgcgccctcc ggaatccaca gctccaggcg gatatcgctg tccttggtcg
     3061 ggcggctggt gaccgagacc ttgcagacct gcttgtcgcc gaccttctcg gagaccgcct
     3121 tggtcacctc ggcgtggggc agcacggtct tgaccaggtc ggcgcaggcc gtctcggcat
     3181 gagctgccgc cggcgcgccc agcgccagca gcgatacgga catggcggcc agcgccagtg
     3241 tggtcgattt catccctaaa ccctcccagg cttcgtttgt tatcggagtt taggcacagg
     3301 ccggcgcgcg gcgcaaaacg acaaaggccc cggagctctg cagcgccgag gcccaggtcg
     3361 ggctctcggg tgtcgagagg ggctagtggc ggaagatcga ggtttcgccc gcgtcggacg
     3421 gcatctcgcg gtactggcgc agctcgttgc ggccgaccac catgtggtgg acttcgtccg
     3481 gaccgtcggc gatccgcagg gtccgcgtcg aggtgtacat gcgggccagc ggggtcttct
     3541 ggctgacgcc gagcgcgccg tgcatctgga tcgcctgatc gatgatctgg cagaccttct
     3601 ccggcaccat ggccttgacc atgtggatcc agacgcgggc ttcctggttg cccaggacgt
     3661 ccatggcctt ggcggccttc agcaccatca ggcgcatggc ctcaatgtcg atgcgggcgc
     3721 ggctgatgat ttcaagattg ccgcccagct gcacgagcgg cttgccgaag gcggtgcggg
     3781 tgaggccgcg ggtgaccatc aggtccagcg ccttttcggc cgagccgatg gcgcgcatgc
     3841 aatggtggat gcggcccggt cccaggcgaa gctggctgat ctcgaagcca cggccctcgc
     3901 ccaggagcat gttcgaggcc ggcacccgga cgttgtcgaa caggatgtgc atgtggccgt
     3961 gcggcgcgtc gggatcgccg aacacattca tggggccgag aatcttcacg ccgggcgcgt
     4021 cggtgggcac caggatctgc gactgtcgta gcgccggcgg gccgtcgggg ctggtctgga
     4081 ccatggtgat catgatcttg cagcgcgggt ctccggcccc ggagatgtag tgcttctcgc
     4141 cgttgatgac gtactcgtcg cccaccaggg ttgcgcgggt attgatgttc ttggcgtccg
     4201 aggaggcggc gttcacctcg gtcatggcga aggccgagcg gatcttgcct tccagcaacg
     4261 gctccagcca ctgcttcttc tgctcgggcg tgccgacgcg ttccagcacc tccatgttgc
     4321 cggtgtcggg cgcggcgcag ttcatggtct ccgaggccag ccggttcttg cccagctcga
     4381 cggcgatata ggcgtagtcc aggttcgaca ggccctcgcc ggtctcggcg ttgggcagga
     4441 agaagttcca aaggcccgcg gccttggcct tgtccttggc ggcctcgagg cattccagct
     4501 ggccgggcgc ataggaccag atgtcggggt tgccctcgcc caggcgatgg aactcctcgc
     4561 tcatcggctc gacgacgtcc ttgatgaacg tcttgacctt ttccagcagc ggcatggctt
     4621 tggccgacat ccgcaggtcg ttgagatcat ccatcgggtt cagcgcgaag ctggactccg
     4681 cacggtccgc ggtcatggtc atatcggtcg ctcccaaggc tcttcttggc cgcgatcttt
     4741 ggcgccaaca ggcggttcaa acaagcgttt aagcgcggct cagccgtaga gcgcgccgcg
     4801 cgcgctcatc gcgatcagcg cggcggtgag cgccagcgcg cccagcggga cgatgagttt
     4861 cagccaaagg ttcatcgcgc ccagataggc acgcgccctc gggcgttcca gttaagcttt
     4921 ggaaaggcgc cggcggccgc gtgggccgcc gggccgaggg tgtcggccta tttcaccggg
     4981 acgtggtcga tgttcgggca gaccgcggcg agcagggcgg tgtcttccgg accgcccaga
     5041 ttcttcggcg tctcgccgcg ccagccgttg accgtcgaga acggcgcggt cgagggcttg
     5101 aaggccccca tcatgatcac gttcttcttg ccgcaatcga tggcgtagac cgagccgacg
     5161 cccttgtccg gaccgctggg catcaggttc gccgagggct tggagatcgc ctgcatcacc
     5221 accaagcggc cggtctgctt gtccttgtag gaatagtcgg cgtcatagga ccactcgatg
     5281 ccgttcgcgc cgtcggcgaa cttcgtccag tgctccgcaa acgccgaacc ggcggtcgcc
     5341 agggctgcgg cggacgttgc gatgagggcg gcaagcgcta gggcgcgtcg cataaggtga
     5401 tctctccaga ctagattgcg ttcgttgaac gcgaccctag cggcgcttct gaggcgcctc
     5461 cagcattttc cgcaaacgcc acccgacccc gaatggggcg cggaatggaa cggaaccaag
     5521 cgcgcgacct tgactcgcca agcactgttt cctacttgca ccccgtcgtt agcactcaag
     5581 ggccgcgact gctaacacgc ggccttgagg cgcttgcgct gtcacaaaac caaccgtcgt
     5641 ttcgaacgga gaaagagcat catggcgttt cgtcccctgg gagaccgcgt cctcgtcaag
     5701 cgcgtcgagg aagaagaaaa gaccaagggc gggatcatca tccccgacac cgcgaaggaa
     5761 aagccgcagg aaggcgagat cgtctccgtc ggtcccggcg cgcgtgacga ctccggcaag
     5821 atccagccgc tggacgtcaa gaagggcgac aagatcctgt tcggcaagtg gtccggcacc
     5881 gagatcaagc tcgacggcca ggatctgctg atcatgaagg aaagcgacgt cctgggcgtg
     5941 ctcgaggcct aacggccgca cgcttcacct aacccatcca tttccaagaa aagagagttc
     6001 ccatcatggc tgcgaaagac gtgttcttcg cttccgacgc gcgagatcgg atgctgcgcg
     6061 gcgtcaacat cctggccaat gcggtcaagg tgacgctcgg tcccaagggc cgcaatgtga
     6121 tcatcgagaa gtccttcggc gccccgcgct ccaccaagga cggcgtgacg gtcgccaagg
     6181 aaatcgaact cagcgaccgc ttcgagaacc tcggcgccca gctgatccgc gaagtcgcct
     6241 ccaagaccaa cgacaaggcc ggcgacggca ccaccaccgc cacggtgctg gcgcaagcca
     6301 tcgtcgtcga gggccttaag tcggtggccg ccggcatgaa cccgatggac ctgaagcgcg
     6361 gcgtcgacaa ggcggtcgcc aaggtcgtcg aggagatcaa gaactcctcg cgcaaggtca
     6421 ccaccaacga agaaatcgcc caggtcggca ccatctccgc caacggcgat gtggaagtcg
     6481 gcgcgatgat cgccaaggcc atggccaagg tcggcaacga aggcgtcatc acggttgaag
     6541 aagccaagac cgccgagacc gaactcgacg tcgtcgaagg catgcagttc gaccgcggct
     6601 acctctcgcc gtacttcgtc accgacccgg agcgcatgga agtcgtcctc caggacccgt
     6661 acatcctcat ccacgagaag aagatctcgt cgatgaagga cctcctgatc atgaaggagt
     6721 ccgacgttat gggcgtgatt gaaggcgcga tcg
//
LOCUS       DATAJL010000044         2457 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26400,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000044 DATAJL010000000
VERSION     DATAJL010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2457)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2457)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2457
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26400"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..692)
                     /locus_tag="VHN39_00780"
     CDS             complement(<1..692)
                     /locus_tag="VHN39_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HEX2814897.1"
                     /translation="MPPRLKPTRLEYVVDGVRLRTQLSAAALEASGDVAQRKAALDIL
                     KAALFRGRMIAKERLENGAGGIETARLLSGVTDEVITALWDFTTVHIFRARNPTEGER
                     LALMAVGGYGRGTLAPFSDIDLLFVRPYKQTAHAESVIEYMLYALWDLGFKVGHASRT
                     VEECVKLSREDFTIRTSILESRRLAGDQKLADELTRRFQNEVVRGSGAEFVAAKLKER
                     DERHARAGASRY"
     gene            complement(803..970)
                     /locus_tag="VHN39_00785"
     CDS             complement(803..970)
                     /locus_tag="VHN39_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814898.1"
                     /translation="MIDNERQPDALAPNPAVELDNADLGQVVGGATTTTQTSGDKVSQ
                     HDIPITKRIDP"
     gene            complement(1043..1192)
                     /locus_tag="VHN39_00790"
     CDS             complement(1043..1192)
                     /locus_tag="VHN39_00790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814899.1"
                     /translation="MTDTERKPDAPAESPEAEVIDTDLDQVVGGAQDIHFTKPIDKPS
                     PVFFP"
     gene            complement(1266..1436)
                     /locus_tag="VHN39_00795"
     CDS             complement(1266..1436)
                     /locus_tag="VHN39_00795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814900.1"
                     /translation="MTDAELKLPADDANDSAVDDNAVDDSGLDQVVGGTKSVDASSPV
                     LYTKCATGTHSG"
     gene            complement(1516..>2457)
                     /locus_tag="VHN39_00800"
     CDS             complement(1516..>2457)
                     /locus_tag="VHN39_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEX2814901.1"
                     /translation="RLDVAAGVAEWAEDVGASRPVVDRSTAFEAEAARHPVVENAVRR
                     AGEAFTPNDCRLDGAGAGGPRLAIVTGPNMAGKSTFLRQNALLAVLAQAGCFVPAKRL
                     RLGVVDRLFSRVGAGDDLARGRSTFMAEMVETAAILTQATPRSFVILDEIGRGTATYD
                     GLAIAWACAEALHETNRCRALFATHYHELAVLEQRLAYVANLSLKAKEWNGDLIFLHE
                     AGPGPADRSYGVQVAKLAGVPGPVVARARDVLERLERDAASPANLDALPLFAAVAEPS
                     ASSGPSPAEEALRVMDPDGMSPREAMDALYRLKGLLG"
BASE COUNT          374 a          788 c          875 g          420 t
ORIGIN      
        1 atgtagcggc tggccccagc gcgggcatgg cgttcgtccc gctccttgag cttggcggcc
       61 acgaactccg cgccggagcc ccggacaact tcattctgaa aacgccgggt cagttcgtcg
      121 gcgagcttct ggtcgccggc caggcgccgg gactccagga tcgaggtgcg gatggtgaag
      181 tcctcacggg agagcttcac acactcttcg acggtcctgg aagcatgacc gactttgaag
      241 cccaggtccc aaagggcgta gagcatatat tcgatgacgc tctcggcgtg ggcggtctgt
      301 ttgtatggcc gcacgaaaag cagatcgatg tcggagaagg gcgccagcgt tccgcggccg
      361 tagccgccga cggccatgag cgccaatctt tcgccttcag tcggattgcg ggcgcggaaa
      421 atgtggacgg tggtgaagtc ccagagcgcg gtgatcacct catcggtgac gcctgagagc
      481 aggcgtgcgg tctcgatgcc gccggcgccg ttttccagcc gctccttggc gatcatccgg
      541 ccgcggaaaa gggcggcctt gaggatatcg agggccgcct tgcgctgggc gacgtcgccc
      601 gaggcctcca gcgccgccgc cgacagctgg gtgcgcaacc gcaccccgtc gacgacatat
      661 tccaggcggg tgggtttgag gcggggcggc atgaccctgc gcatataggc cgatccgccg
      721 cccggcgcat atggggccgg actttcagtc gccgggcgcc gctggatcga ggcggcttcg
      781 cctggccgta cggttatgga ctctatggat cgatgcgctt ggtgatgggg atatcgtgct
      841 ggctgacctt gtcccccgag gtctgggtcg tggtggtcgc gccgccgacg acctgaccga
      901 ggtcggcgtt gtcaagctcg accgcggggt tcggagccag ggcgtccggc tggcgttcgt
      961 tgtcaatcat ggcatgtcct cctgagatcc tgccagagag tgatgcggat gcatcgggaa
     1021 aaggtcgcgc agccgtggct tactacggga agaacaccgg gctcggttta tcgatgggct
     1081 tggtgaagtg gatgtcctgg gcgcctccga ccacctgatc caggtcggta tcgatgacct
     1141 cagcctcggg gctctcggcc ggggcgtccg gtttgcgttc ggtatcggtc atggcatgtc
     1201 ctcctcaagg tcgcctgaaa atgatacgga tggactcgga aaaaaagcgg cgccgcggcg
     1261 cgcggctacc cggaatgggt ccccgtcgcg cacttcgtgt acagcaccgg gctcgaggca
     1321 tcgacggact tggtgccgcc gacgacctgg tcgagcccgc tgtcgtctac cgcgttgtcg
     1381 tctacagcgc tgtcgttcgc gtcatcggct ggcaatttga gttcggcatc ggtcacggcg
     1441 ggtcctccct gggtgcctga acctgatacg tatgggctca tcaaaaggcg gcgccgaatc
     1501 acgattattt agagttcagc ccagcaggcc cttgagtctg tagagcgcat ccatcgcctc
     1561 gcgcgggctc atgccgtcgg ggtccatgac ccgcagcgcc tcttccgccg gactcggtcc
     1621 ggagctggcg gagggttcag ccacggcggc gaacagcggc agggcgtcga ggttggcggg
     1681 gctggcggcg tcgcgctcca gccgctccag aacgtcgcgg gcgcgggcga ccacgggacc
     1741 cggcacgccg gcgagcttgg ccacctggac gccgtagctg cggtcggccg gacccgggcc
     1801 ggcctcgtgc aggaagatca ggtcgccgtt ccactccttg gccttgagcg acaggttcgc
     1861 cacataggcg agccgctgct cgagcaccgc gagctcgtga tagtgcgtgg cgaagagcgc
     1921 gcggcagcgg ttggtctcat gcagggcctc ggcgcaggcc caggcgatgg ctaggccgtc
     1981 gtaggtggcg gtgccccggc cgatctcgtc aaggatcacg aaggacctgg gcgtcgcctg
     2041 ggtgaggatg gcggcagtct cgaccatctc ggccatgaag gtggagcgcc cacgcgccag
     2101 gtcgtcgccg gcacccacgc ggctgaacag gcggtcgacg acgcctagcc gcaggcgctt
     2161 ggccggcacg aagcagcccg cctgggcaag gactgccagc agggcgttct ggcgcaggaa
     2221 ggtcgacttg ccggccatgt tcggccctgt gacgatcgcc agcctcggcc cgccggcgcc
     2281 cgccccgtcc aggcggcagt cgttgggcgt gaaagcctcg cccgcgcggc gcaccgcgtt
     2341 ttccaccacc ggatggcggg cggcctcggc ctcgaaggcg gtggagcggt cgaccaccgg
     2401 gcgcgaggcg cccacgtcct cggcccactc ggcgacgccg gcggccacgt ccagacg
//
LOCUS       DATAJL010000045         2590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_103401,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000045 DATAJL010000000
VERSION     DATAJL010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103401"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VHN39_00805"
     CDS             <1..212
                     /locus_tag="VHN39_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HEX2814902.1"
                     /translation="PSHLDVANRVFSPEAGAVAWARTVAQAFDLAENAGKGVLKVEGR
                     MVERLHLVEAQRLIAVADAIAAREV"
     gene            220..900
                     /locus_tag="VHN39_00810"
     CDS             220..900
                     /locus_tag="VHN39_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814903.1"
                     /translation="MRIGVVSLLMMATAMAAGAQPAPAPASAPRDAIADLIDRSVPPP
                     KDEDEPDTAGQPRAAQEPEIDSTVAPQPGPQVPFAPAPRQQLTAPVRIDETGKTPDAP
                     LTVRDMVYDARIRSSFASAESFQGPLDGGWTLTERGDVDRYALQIVDRRDRLEAVWRD
                     LRRAGSLNASGLVDDIQRTGPDLTLRFASGDIACLISLHQGADGRWIGDLARGDQHFT
                     VTLRRTSP"
     gene            complement(897..1322)
                     /locus_tag="VHN39_00815"
     CDS             complement(897..1322)
                     /locus_tag="VHN39_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEX2814904.1"
                     /translation="MVMFEIDPAFIATSKAVGDLALSHVRLQSDARFPWIVLIPRRAA
                     ARELEDLAAGERDVLMEEILRAGDAVRAVAEALGRPAAKLNVAQLGNVTPQLHVHVIA
                     RRADDAAWPSPVWGVGAAEAYAPTAQEAALSAARLALGL"
     gene            1437..2420
                     /locus_tag="VHN39_00820"
     CDS             1437..2420
                     /locus_tag="VHN39_00820"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016615 - malate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006108 - malate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEX2814905.1"
                     /translation="MAKSPIRVAVTGAAGNIGYALLFRIASGQMFGADQPLILQLLEI
                     PVEGPQKALKGVAMELDDCAFPLLQSMVLTGDADVAFKDVNWALLVGSKPRGPGMERA
                     DLLKDNGKIFIAQGQSIDRVAADDCRVAVVGNPCNTNVMIAASQAKRLPKDRFTAMVR
                     LDENRGRAQLAQKAGVSIDAVSDLFIYGNHSPTMFADFTHAKINGKDAASVIGDEAWL
                     KTDFLPAVGKRGGAIIEARGVSSAASAANALVDHVRDLCTPGKMHSVAIPSGGAYGFA
                     EDVWAGMPVLSTIDGYEMITDYAMDDFARSKIAITNDELVGERDTVKEMLA"
BASE COUNT          409 a          948 c          885 g          348 t
ORIGIN      
        1 atccaagcca tctcgatgtc gccaaccgcg tcttctcgcc ggaggccggc gcggtcgcct
       61 gggcgcggac ggtggcgcag gccttcgatt tggcggaaaa tgccggcaag ggcgttctca
      121 aggtcgaagg gcgcatggtc gagcggctgc atctggttga ggcccagcgg ctgatcgccg
      181 tggccgacgc catcgccgcg cgggaggtct gaggacacga tgcggatcgg ggtggtctca
      241 ctcctgatga tggccacggc gatggcggcc ggcgctcaac ccgcgcccgc gccggcctct
      301 gcgccgcgcg atgcgatcgc cgacctcatc gaccgcagcg tgccgccgcc gaaggacgag
      361 gacgaacccg acaccgccgg ccagccacgg gccgcccagg agccggagat cgactccacc
      421 gtcgcgccgc agccggggcc gcaggtcccc ttcgcaccgg cgccgcgcca gcagctgacc
      481 gccccggtcc gcatcgacga gaccggcaag accccggacg ccccgctcac cgtgcgcgac
      541 atggtctacg acgcgcgcat ccggtcctcc ttcgcctcgg ccgagagctt ccagggcccg
      601 ctggacggcg gctggaccct gaccgagcgg ggcgatgttg accgctacgc cttgcagatc
      661 gtcgatcgcc gcgaccggct ggaggcggtc tggcgcgacc tgcggcgcgc gggctcgctg
      721 aacgcctcgg gcctggtgga cgacatccag cgcaccggtc cggacctgac gctaaggttc
      781 gcctcgggcg acatcgcctg cctcatcagc ctgcaccagg gcgccgacgg ccgctggatc
      841 ggcgacctgg cccgcggcga ccagcacttc accgtcaccc tgcgtcggac gagcccctaa
      901 agcccaagcg ccagccgggc ggcggacagg gccgcctcct gggcggtggg cgcataggcc
      961 tcggcggcgc ccacgcccca gaccggcgag ggccaggccg cgtcgtccgc gcggcgggcg
     1021 atcacatgca catgcagctg tggcgtgacg ttgccgagct gggccacgtt gagcttggcc
     1081 gccggccgtc ccagggcctc ggcgacggcg cgcacggcgt ctccggcccg caggatctcc
     1141 tccatcagga cgtcgcgttc gccggccgcc aggtcttcca gctcgcgggc ggcggcgcgg
     1201 cgcgggatca gcacgatcca ggggaagcgg gcgtcagact gcaggcgcac atggctcagc
     1261 gccaggtcgc ccacggcctt agacgtcgca atgaacgcgg ggtcgatctc gaacatcacc
     1321 aagctgaaca cagcgggtgc gcgcaagcca agtccgtttc ccgaacggcg cggcattgcg
     1381 gcccacgctg gcgtgggcta cggacccgcc gcagcagcta aagatggagc aagagcatgg
     1441 cgaagtcccc gatccgcgtg gcggtcaccg gcgccgcagg caacatcggc tacgcgctcc
     1501 tgttccgcat cgcatcgggc cagatgttcg gcgccgacca gccgctgatc ctgcagctcc
     1561 tggaaatccc cgtggagggc ccacagaagg cgctgaaggg cgtggccatg gagctcgacg
     1621 actgcgcctt cccgctcctg caatccatgg tcctgaccgg cgacgcggac gtggccttca
     1681 aggacgtgaa ctgggcgctg ctggtgggct ccaagccgcg cgggcccggc atggagcgcg
     1741 ccgacctgct gaaggacaat ggcaagatct tcatcgctca gggccagtcg atcgaccgcg
     1801 tcgccgccga cgactgccgc gtggcggtgg tgggcaaccc ctgcaacacc aacgtcatga
     1861 tcgccgccag ccaggccaag cgcctgccca aggaccgctt cacggccatg gtgcgcctgg
     1921 acgagaaccg cggccgcgcc caactggccc agaaggccgg cgtctccatc gacgcggtct
     1981 cggacctgtt catctacggc aaccactcgc cgaccatgtt cgccgacttc acccacgcca
     2041 agatcaacgg caaggacgcc gcctcggtga tcggcgacga agcctggctg aagaccgatt
     2101 tcctgccagc ggtcggcaag cggggcgggg cgattatcga ggcccgcggc gtctcctcgg
     2161 cggcctcggc ggccaacgcc ctggtcgatc acgtccgcga cctctgcacc cccggcaaga
     2221 tgcattcggt ggcgatcccc agcggcggcg cctacggctt cgccgaggac gtctgggccg
     2281 gaatgccggt gctctcgacg atcgacggct acgaaatgat caccgattac gccatggacg
     2341 acttcgccag gtccaagatc gccatcacca acgacgaact ggtcggcgag cgcgacaccg
     2401 tcaaggagat gctggcctag cagctggcgt cacccctcca gcctcaatac ccgtcgccgt
     2461 gggcctcgcg cgcctggccg ttcagctcgg cgatgcgggc caggtagacg tcgtgcaccg
     2521 cccagggcgc ctcgcgcgcg gcggctgagc gcgcgacgag ccaacgctgc tgctggtgct
     2581 gcagctgggc
//
LOCUS       DATAJL010000046         2104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_676,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000046 DATAJL010000000
VERSION     DATAJL010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_676"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..841)
                     /locus_tag="VHN39_00825"
     CDS             complement(<1..841)
                     /locus_tag="VHN39_00825"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEX2814906.1"
                     /translation="MSKRTKEDELVFLPLGGSNEIGMNFNLYGFGPPHDRKWIVVDLG
                     ITFGDQTTPGVEVILPDPTFMEENAHRLLGIVLTHAHEDHIGAVAWLWPRFKAPIYAT
                     PFTAFILREKLREAGLLEEAEITVVPLGGKISLGPFELELITLTHSIPEPNGLAIRTP
                     LGTILHTGDWKIDPDPLLGAVTDQDAIQKLGDEGVLAMVCDSTNVFVDGHAGSEADVR
                     KALIPLIGSLKGKVAVACFASNVARMDSIIRAAEANGRRVCLAGRSMHRMSSAAKSVG
                     LMEG"
     gene            complement(842..1621)
                     /locus_tag="VHN39_00830"
     CDS             complement(842..1621)
                     /locus_tag="VHN39_00830"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEX2814907.1"
                     /translation="MLLAIEQGNTNTLFAVHDGKTWIAQWRSATHSTRTADEYAVWLS
                     QLLAMAGLQLGVFDGCIISSVVPQSIFNLRNLARRYLKVEPLVIGENVELGIEVRIEK
                     PSEAGADRLVNAIGAHVVYPGDLIVIDSGTATTFDVIAADGGMEGCAIAPGINLSMEA
                     LHQAAAKLPRVAIQRPRGNSAIGKDTVASMQSGVFWGYIALIEGLVARIKAEWGKPMT
                     VIGTGGVASLFHGATSSIDHFDPDLTIRGMLEIYRRNTAKE"
     gene            complement(1626..>2104)
                     /locus_tag="VHN39_00835"
     CDS             complement(1626..>2104)
                     /locus_tag="VHN39_00835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEX2814908.1"
                     /translation="TCLGAGAARLKWPNDVLVFGKKAVGILVESGARPDGRLWLAVGI
                     GINLAHAPTDTERPATSFAEHMTGPPPKPLDALQVLAGRFESWRKLWVTQGFSPIAEG
                     WTARAHGLGERCEARLPNRTLSGIAEGMDPDGALRLRLDDGALERITAGDVFFGGA"
BASE COUNT          343 a          688 c          721 g          352 t
ORIGIN      
        1 ggccctccat caggccgacc gacttggcgg ccgaagacat ccggtgcatg gagcggccag
       61 ccaggcagac gcggcggccg ttggcctcgg ccgcgcggat gatggagtcc atccgggcga
      121 cgttggaggc gaaacaggcc accgccacct tgcccttcag gctgccgatc agcgggatca
      181 gcgccttgcg gacatcggcc tcggaccccg catggccgtc cacgaagacg ttggtgctat
      241 cgcagaccat ggcgagcacg ccctcgtcgc ccagcttctg gatagcgtct tgatcggtga
      301 ccgcgcccag cagggggtcc ggatcgatct tccagtcgcc ggtgtgcagg atggtgccca
      361 gcggcgtgcg gatcgccaga ccattgggct cggggatcga gtgggtgagg gtgatcagct
      421 ccagctcaaa cgggcccagc gaaatcttgc cgcccagcgg cacgacggtg atctccgcct
      481 cctccagcag gcccgcctcg cgcagctttt cgcgcaggat gaacgcggtg aagggcgtgg
      541 cgtaaatcgg cgccttgaac cgcggccaga gccacgccac cgcgccgatg tggtcctcgt
      601 gcgcatgcgt cagcacgatc cccagcagcc ggtgggcgtt ctcctccatg aaggtcggat
      661 ccggcaggat tacctccacg ccgggcgtgg tctggtcgcc gaaggttatc cctaagtcga
      721 ccacgatcca cttgcggtcg tgcggcggcc cgaagccgta gaggttgaaa ttcatgccga
      781 tctcgttcga tccgccgagc ggcaggaaaa cgagctcgtc ctctttggta cgcttagaca
      841 ttcattcctt cgccgtgttc cggcggtaga tctcgagcat gccgcggatc gtcagatccg
      901 ggtcgaagtg gtcgatggag ctggtggctc cgtgaaacag cgaggcgact cctcccgtgc
      961 cgatcacggt catgggcttg ccccactcgg ccttgatccg tgcgaccagg ccttcgatca
     1021 gggcgatgta gccccagaag acgcccgact gcatggaggc cacggtgtcc ttgccgatag
     1081 cggaattgcc ccgcggacgc tggatggcta cccgcggaag cttggccgcc gcctgatgca
     1141 acgcttccat cgagagattg atccccggcg cgatggcgca gccctccatg ccgccgtccg
     1201 cggcgatcac gtcgaatgtg gtggcggtgc ccgagtcgat gacgatcagg tcgcccggat
     1261 agaccacgtg ggcgccgatg gcgttgacca gccggtcggc gccagcctcg gacggctttt
     1321 cgatgcgaac ctcgatgccg agttccacgt tctcgccgat caccaggggt tcaaccttca
     1381 ggtagcggcg ggcgaggttc ctgaggttga agatcgactg cggcaccacg ctggagatga
     1441 tgcagccgtc gaagacgccc agctgcaagc cggccatggc caggagctgg gagagccaga
     1501 cggcgtattc atccgccgtg cgggtggaat gggtggccga gcgccactgc gcgatccagg
     1561 ttttgccgtc atgcacggcg aacaacgtgt tggtgttgcc ctgttcgatg gcgagaagca
     1621 tgggctcagg cccctccgaa gaagacgtcg ccggccgtta tgcgctccag agcgccgtcg
     1681 tccagccgaa gccgcaaggc gccgtccggg tccatgccct cggcgatgcc cgaaagcgtg
     1741 cggttgggca ggcgcgcctc gcaccgttcg cccaggccgt gggcgcgggc ggtccagccc
     1801 tcggcgatgg gcgaaaaccc ctgcgtcacc caaagcttgc gccaggattc gaacctgccg
     1861 gccagcacct gcagtgcgtc cagcggcttg ggcggcgggc cggtcatgtg ttcggcgaaa
     1921 gaggtcgcag ggcgttcggt gtcggtgggg gcgtgggcga ggttgatgcc gatgccgacg
     1981 gcgagccaca ggcggccatc gggccgcgcg ccggactcca ccaggatgcc gaccgccttc
     2041 ttgccgaaca ccagcacgtc attgggccat ttcagccgcg cggcgccggc gcccaggcag
     2101 gtgt
//
LOCUS       DATAJL010000047         2275 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26443,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000047 DATAJL010000000
VERSION     DATAJL010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26443"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..717
                     /locus_tag="VHN39_00840"
     CDS             <1..717
                     /locus_tag="VHN39_00840"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2814909.1"
                     /translation="ASTPSAVENFSTNNLAGAQTNTPTAFSETAADGGGTSNSNTTVS
                     LGHLHSSQFSTFPLGAAIGHSQGFVDIFVDDFGPAVSALTKGSLVMTGTLSPTVGGQD
                     NSDALVLYTIHDIDNGNADTNTIRLQFNTANPALDVSSGVLHTVVGDRLEVSYVFEID
                     AAQDNTAPFATAFADFSHTANFYVDTGAPGTDFRSQTGYDYATPLASNGVPEPQAWAL
                     LLAGFALTGAAVRRRRLRPA"
     gene            complement(786..1643)
                     /locus_tag="VHN39_00845"
     CDS             complement(786..1643)
                     /locus_tag="VHN39_00845"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEX2814910.1"
                     /translation="MPADPRAFAAILGLEAPLEVADIGAADIAETPPYRGLLDAGLAR
                     LNAFDADERQHAKLRQTYGEALSLFTEIIGDGTRQTLHLAAPASGMTSLLKPDMARLE
                     FFNGFTRFGEIHATEVVQTVRLDDVPGLPDLDFLKMDIQGGELQALSHGEARLAGCAM
                     IHLEVSFVPLYEGQPSFGEIDIWMRAHGFIPHCFTDVKRWSVSPILRDNDIRMPFNQL
                     LEADIVYTPDLTDPDLDADLLKKTALLADHCYGSVDLAGHIVVRLELAGAVERGAFER
                     YLGLLNANG"
     gene            complement(1693..>2275)
                     /locus_tag="VHN39_00850"
     CDS             complement(1693..>2275)
                     /locus_tag="VHN39_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HEX2814911.1"
                     /translation="VCAVPVTADIEGGYTDDLDQLAETIRAVIGAGAVGINLEDGRRD
                     ADLHARKIEAARKAADGAGVALFINARTDVYLKGLAEGHAAYVETTHRAERYRGAGAS
                     GIFVPGPSEPDLIGRLADEIKLPLNIMLLPGLAKAHQLQALGVRRVSSATAPFRQAYA
                     NLANATAAFLADGDPAAFAADAERLGNLNKRFE"
BASE COUNT          337 a          791 c          777 g          370 t
ORIGIN      
        1 gcttcgaccc cgagcgcggt ggaaaatttc agcaccaaca acctggccgg cgcgcagacc
       61 aacacgccta cggccttttc cgagacggcc gccgacggcg gcggcacgtc gaactcgaac
      121 accacggtgt cgctcggcca tctgcattcg tcgcagtttt cgaccttccc gctcggcgcc
      181 gcgatcggcc atagccaggg cttcgtggat attttcgtcg atgacttcgg ccccgcggtg
      241 tccgcgctga cgaagggctc tctcgtgatg accgggaccc tgtcgccgac ggtcggtggc
      301 caggacaaca gcgatgcgct ggtcctctat acgattcatg acatcgacaa cggcaacgcg
      361 gacaccaaca ccatccggct gcagttcaat actgccaacc cagcgctcga tgtttccagc
      421 ggcgtcctgc atacggtcgt gggggaccgg cttgaagtct cctacgtctt cgagatcgac
      481 gccgcgcagg acaacacagc cccgttcgcg acggccttcg ccgacttcag ccatacggcc
      541 aacttctatg tcgacaccgg cgcgcccggg accgatttcc ggtcgcagac cggctacgac
      601 tacgccacgc cgctcgcctc caacggcgtt cccgaaccgc aggcctgggc gttgctgctg
      661 gccggcttcg ccctgacggg cgcggctgtg cgccgccgcc ggctgaggcc ggcctgaccg
      721 ctacccctcg aaccgcttgt tgaggtggct cagccccgcc gcgaaggtcg cggtgtcgcc
      781 gtcggtcagc cgttcgcgtt gagaagcccg aggtagcgct cgaacgcgcc gcgctcgacc
      841 gcgccggcca gttccagccg cacgacgata tggccggcca ggtcgacgct gccgtagcag
      901 tggtccgcca gcagcgcggt cttcttcagc aggtcggcgt ccaggtccgg atcggtgagg
      961 tcgggcgtat agacgatgtc ggcttccagg agctggttga acggcatgcg gatgtcgttg
     1021 tcgcgcagga tcggtgaaac cgaccagcgt ttcacgtcgg tgaagcagtg cgggatgaag
     1081 ccgtgcgccc gcatccagat atcgatctcc ccgaagctgg gctggccctc gtagagcggc
     1141 acgaaggaga cctccaggtg gatcatcgcg cacccggcca gccgcgcctc gccatggctg
     1201 agcgcctgca gctccccgcc ctggatgtcc atcttcagga aatcgaggtc gggcaggccc
     1261 gggacgtcgt ccagccgcac ggtctgaacc acctcggttg cgtggatttc cccaaagcgc
     1321 gtgaagccgt tgaagaactc cagtcgcgcc atgtccggct tgagcagcga ggtcatcccc
     1381 gacgccggcg cggccaggtg cagggtctgc cgggtcccgt cgccgatgat ctcggtgaac
     1441 agcgacagcg cctcgccata ggtctgccgc agcttggcgt gctggcgctc gtcggcgtcg
     1501 aaggcgttca gccgcgcgag gcccgcgtcc agcaggcccc ggtagggcgg cgtctcggcg
     1561 atgtccgccg cgccgatgtc ggcgacctca agcggcgcct ccagaccgag gatggcggca
     1621 aaggctctgg ggtcggcggg catggtgcga ggctagccgt ccgcggctgc gtcgcctaga
     1681 cgccagcgct gcctattcga accgcttgtt gaggttgccc agccgctcgg cgtcggccgc
     1741 gaaggccgcc gggtcgccgt cggccaggaa ggccgccgtg gcgttggcga ggttggcgta
     1801 ggcctgccgg aacggcgccg tcgcggagct cacccggcga acgcccagcg cctgcagctg
     1861 gtgggccttg gccaggcccg gcaagagcat gatgttgagc ggcagcttga tctcgtcggc
     1921 cagccgcccg atcaggtcgg gttcggaggg gcccggcacg aagatgccgc tggcgccggc
     1981 gccgcggtag cgttcggcgc ggtgggtggt ctccacatag gccgcgtgac cctcggccag
     2041 gcccttcaga tagacgtcgg tgcgggcgtt gatgaagagc gccacgccgg cgccgtccgc
     2101 cgccttgcgc gccgcctcga tcttgcgggc gtgcaggtcg gcgtcgcggc ggccgtcctc
     2161 cagattgatc cccacggcgc ccgcgccgat caccgcccga atcgtctcgg cgagctggtc
     2221 caggtcgtcg gtgtagccgc cctcgatgtc ggcggtgacc gggacggcgc acacg
//
LOCUS       DATAJL010000048         1632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26550,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000048 DATAJL010000000
VERSION     DATAJL010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1632
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26550"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /gene="motA"
                     /locus_tag="VHN39_00855"
     CDS             complement(<1..764)
                     /gene="motA"
                     /locus_tag="VHN39_00855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEX2814912.1"
                     /translation="MFQIIGIVLLFGCVFGSFIMSGGNIGVVLGALPFEMLTIGGAAT
                     AALLTANSLPVLKGLGGGMGKVFKGSKWKTTDYRDLLSLLFLLTKTMKSKGVIALESH
                     IETPKESSIFSRYPRIMHDHFAVDFICDTLRMMTMNLEDPHQVEDAMENQLEKHHHEA
                     LEAPHALTQTADALPALGIVAAVLGVIKTMAAITEPPAVLGEMIGSALVGTFLGVFLA
                     YGLVGPMAARMAAVIEEEGSFYKIIQSVLVAHLHGNA"
     gene            868..>1632
                     /locus_tag="VHN39_00860"
     CDS             868..>1632
                     /locus_tag="VHN39_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2814913.1"
                     /translation="MSADPPSSTMPKRAFAIIFCSSVATAIGNTGLISVLPLIGRSLA
                     IPDEMVVAIFSLSAILWAVSSPFWAKASDRYGRKPLMMVGLSGFMVSMTVCGAVVSAG
                     LRHMAAPMIIFAALLLGRALFGLFGAASNPANQAYVADHTPRAGRTQAMASLAGAFGL
                     GTVFGPFLAPLFIYPVVGLAGPLFTFAAIAAVMLLVVWRLLPESKRRTESPEDEAEAG
                     EEAALEKARPMWRDRRVIPFLIYGFIVATCQTAQQQT"
BASE COUNT          250 a          529 c          556 g          297 t
ORIGIN      
        1 gcgttgccgt gcaggtgagc caccagcacc gactggatga tcttgtagaa ggaaccttcc
       61 tcctcgatca cggcggccat gcgcgcggcc atcgggccga ccaggccata ggccaggaac
      121 acgcccagga aggtgccgac cagggccgag ccgatcatct cgcccagaac cgcagggggt
      181 tcggtgatcg cggccatggt cttgatgacc cccagcaccg cggcgacgat gcccagcgcc
      241 ggcagggcgt cggcggtttg ggtgagggcg tgcggcgctt ccagggcctc gtgatggtgc
      301 ttttcgagct ggttctccat cgcgtcttcg acctggtgcg ggtcttccag gttcatggtc
      361 atcatccgca gggtgtcgca gatgaagtcg acggcgaagt ggtcgtgcat gatccgagga
      421 tagcgcgaga agatcgagct ctccttgggc gtctcgatgt ggctctccag cgcgatcacg
      481 cccttggatt tcatggtctt ggtgagcagg aagagcagcg agagcaggtc acggtagtcg
      541 gtggtcttcc acttggagcc cttgaacacc ttgcccatac cgccgcccag gcccttgagc
      601 acgggcaggg agttggcggt cagcaaggcc gcggtggccg cgccgccgat ggtcagcatc
      661 tcgaagggca gggcgcccag gacgacgccg atgttcccgc cagacatgat gaagctgccg
      721 aacacgcagc cgaacagcag gacgatgccg attatctgga acatggggtc tcccgcaggt
      781 tcggggacca tcgcggttat tgcttaattt cagatggacg ggagaggtcg tttgcgcccg
      841 gtcgcagagc ggcctaattc gccaaccatg tccgcggacc cgccctccag caccatgccc
      901 aagcgggcgt tcgcgatcat cttctgctct tcggtggcga cggcgatcgg caacaccggc
      961 ctgatctccg tgcttccgct gatcggccgt tccctggcga ttcccgacga gatggtggtg
     1021 gcgatcttct cgctgtcggc gatcctgtgg gcggtctcct cgccgttctg ggccaaggcc
     1081 tcggaccgct acgggcgcaa gcccctgatg atggtgggcc tctcgggctt catggtctcc
     1141 atgacggtct gcggggcggt ggtcagcgcg ggcctgcgcc acatggcggc gccgatgatc
     1201 atcttcgcag ccctcctgct cggccgagcc ctcttcggcc tgttcggcgc ggcctcgaac
     1261 ccggccaacc aggcctatgt ggccgaccac actccgcgcg cggggcgcac ccaggcgatg
     1321 gcgagcctgg ccggagcgtt tggcctgggg accgtgttcg ggccgttcct ggcgccgctg
     1381 ttcatctatc cggtcgtggg gctggccggt ccgctgttca ccttcgccgc catcgccgcg
     1441 gtcatgctgc tggtggtctg gcggctgctg ccggagagca aacgtcggac cgagagcccg
     1501 gaggacgaag ccgaggcggg cgaagaagcg gcgctcgaaa aggcccggcc catgtggcgc
     1561 gaccgccgcg tgatcccgtt cctgatctac ggcttcatcg tggccacctg ccagacggcc
     1621 cagcagcaga cc
//
LOCUS       DATAJL010000049         1656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64759,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000049 DATAJL010000000
VERSION     DATAJL010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64759"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1656)
                     /locus_tag="VHN39_00865"
     CDS             complement(<1..>1656)
                     /locus_tag="VHN39_00865"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2814914.1"
                     /translation="TVTFICMLLVVIWACLRRRNGALVFLFGLGSFVTALIYTDLVNN
                     AHVPPVFGSSLVPVASLLLLFSQLLILAQRWSAAIDTSEQSNMDLRRLLDVNISISSE
                     IDLGTLLKKIVKVTTAVIHADRSSLFLHDERTGELASVVAEGVDGKELRIPAAAGLAG
                     WSFTHGQAVNLPDAYADPRFNRDVDAATGYQTHSVLTVPVTTRDGRRVGVMQALNHQD
                     RSSFGESEMERMGAFAAQAAIAIENATLFAEVAAERNYNESILRSMSSGVITLDRDAR
                     VAKLNIAACTILGVSSEAASGAEARLLLTGENAWLMDEIETVSASGRPKTLLDADVRT
                     VRGDTISANLSIVPLMTEDEPVGLLILIEDITEGKRLQGAMRRFMTQKVVDQIMGRED
                     ELLFGSACQASVLFADIRNFTAHAEGLGPRDTVEMLNEIFTDLFEAVSASDGVLDKFI
                     GDAVMAVYGAPLSSGRDPLNAVESAVAMIGMIGALNERRRARDLSDISLGIAVASGEV
                     IAGTIGSPKRMDYTVIGDSVNLASRLEAITKVYQVGIVICEDTA"
BASE COUNT          270 a          554 c          558 g          274 t
ORIGIN      
        1 ggcggtgtcc tcgcagatca cgatgcccac ctgatagacc ttggtgatcg cctccaggcg
       61 ggaggcaagg ttcacgctgt cgccgatgac ggtgtagtcc atccgtttgg gcgaaccgat
      121 ggtgccggcg atgacctcgc cgctggccac ggcgatcccc aggctgatgt ccgacaggtc
      181 ccgcgcgcgc cgccgctcat tgagcgcgcc gatcatgccg atcatcgcca cggcgctctc
      241 gaccgcgttc agcggatcgc ggcccgacga caggggcgcg ccatagacgg ccatcaccgc
      301 gtcgccgatg aacttgtcga gcaccccgtc cgacgccgag accgcctcga agaggtcggt
      361 gaaaatctcg ttgagcatct ccaccgtgtc gcggggcccc aggccctcgg cgtgggcggt
      421 gaaattgcgg atgtcggcga acagcacgct ggcctggcag gcgctgccga acaaaagctc
      481 gtcctcgcgc cccatgatct ggtcgacgac cttctgggtc atgaagcgcc gcatggcgcc
      541 ctgcaggcgt ttgccctcgg tgatgtcctc gatcaggatc agcaggccga ccggctcgtc
      601 ctcggtcatc aggggcacga tcgaaaggtt ggccgaaatg gtgtccccgc ggaccgtccg
      661 cacatcggcg tccagcaggg tcttcggccg gccgctggcg ctgacggtct cgatctcgtc
      721 catcagccac gcgttctccc cggtcagcaa cagccgggcc tccgccccgc tggccgcttc
      781 ggacgacacg ccgagaatcg tgcaggccgc gatgttcagc ttggcgacgc gggcgtcgcg
      841 gtcgagcgtg atcaccccgc tcgacatgga tcgcagaatg ctttcgttgt agttccgctc
      901 cgccgcgacc tcggcgaaca gggtggcgtt ctcgatggcg atagccgcct gggcggcgaa
      961 ggcccccatc cgctccattt cgctctcgcc gaagctcgac cggtcctgat ggttgagcgc
     1021 ctgcatcacc ccgaccctgc ggccgtcgcg ggtggtgacg ggcacggtga gcacgctgtg
     1081 ggtctggtag ccggtggcgg cgtccacgtc ccggttgaac cgcggatcgg cgtaggcgtc
     1141 gggcaggttc accgcctgcc catgggtgaa gctccagccc gccagacccg ccgcggccgg
     1201 gatgcggagc tccttgccat ccacgccctc ggcgaccacg gaggccagtt cgccggtccg
     1261 ctcgtcgtgc aggaacagcg agctgcggtc ggcgtggatc accgcggtgg tgaccttgac
     1321 gatcttcttg agcagggtgc ccaggtcgat ctcgctggag attgagatgt tcacgtccag
     1381 cagccgccgc aggtccatgt tggactgttc ggacgtgtcg atcgccgcgc tccaccgctg
     1441 ggccaggatc agcagctggg aaaacagcaa gagcagtgag gcgaccggaa ccaggctcga
     1501 tccgaagacc ggcggcacat gggcgttgtt caccaggtca gtgtagatca gggccgtcac
     1561 gaatgagccg aggccgaaca ggaagaccag ggcgccgttg cggcggcgaa ggcaggccca
     1621 gatgaccacc agcagcatgc agatgaaggt cacggt
//
LOCUS       DATAJL010000050         3272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52298,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000050 DATAJL010000000
VERSION     DATAJL010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52298"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VHN39_00870"
     CDS             complement(<1..648)
                     /locus_tag="VHN39_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX2814915.1"
                     /translation="MAQPGVAIRGQRSLLRQIREALAGGGPAQTRLDMVVRIIARSMV
                     AEVCSLYMRRSAGEMELFATEGLDPAAVHITRMKPGEGLVGEIMKAGRPLNLADAPEH
                     PAFSYRPETGEDPYHAFLGVPLLRGGRAIGVLVVQNRTARHYTDDEVEDLQIVAMVLA
                     EMVAAGELIGEAALKGVEIAPHRPERLKGSKFGDGLAYGVAVLHEPPVAPSQLLSD"
     gene            971..2428
                     /locus_tag="VHN39_00875"
     CDS             971..2428
                     /locus_tag="VHN39_00875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814916.1"
                     /translation="MEKLDDPVRQRRSSPVAAARTAGDTGTPAGGETVGLRSFLGRHE
                     RAAFVLLLVVGLMARVVWVSQHERLGPMICESYQAAICFARTGGICDTYLPGQGLTAT
                     ATPVMPVIDGLVYRAFGVGSRASEMVLTAFSLTFLCATLLALYLAFRRLRLAVEWRLA
                     ALAAALLLPINFKWETVSMRLFEGGMAAALLAVSLLLVLRLDASREPLRPRDFSLPAV
                     LVGFLALINPPAALGAYGALGVLTLKRVPMRRWLGVALVMAVGLAVFIAPWGLRNERV
                     FGRLILTRSNFPLEHAIGFHSEAVSPANPAAVFVRRGAAIHPYSSDPASPGRAEFARI
                     GELAYMDRLAAETTAWERAHPLDTVRLAARHLVEFWLPPRWSWTIFGNAAPLVLTRQA
                     FIWATTLAAFAAIVWRLVQAPLGPGLYLACVLLIPSLPYALVQPVQRYRYLVVVLTYF
                     LAADFAARVAAYVAKRRLSRQVTPRPPIAGKRTYS"
     gene            2484..3017
                     /locus_tag="VHN39_00880"
     CDS             2484..3017
                     /locus_tag="VHN39_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX2814917.1"
                     /translation="MAKLIFGMMQSLDGYVDHLELPPPGVSLHRHFNDHVRGLAGGLY
                     GRRMYEVMRYWDEDQPDWDAVDHDFAAVWRAQPKWVVSRSLTSVGPNATLVADDVEGF
                     VRRLTADVEGDIDVAGPELAGSLTDLGLIDEYRLYFRPFVLGRGKPYFAGARPPLRLI
                     ASDAIPEDAVRLTFVPA"
BASE COUNT          458 a         1161 c         1068 g          585 t
ORIGIN      
        1 gtcggagagc aactgcgaag gcgccaccgg cggctcgtgc aggacggcca ccccataggc
       61 caggccgtcg ccgaacttgg agcccttcag gcgctcgggc cggtgcggcg cgatctcgac
      121 gcccttgagg gccgcctcgc cgatcagttc gccggcggcg accatctcgg ccagcaccat
      181 ggcgacgatc tgcaggtcct cgacctcgtc gtcggtgtag tggcgcgccg tgcggttctg
      241 gacgaccagc acgccgatgg cgcgcccgcc gcgcagcagg ggaaccccta agaaggcatg
      301 gtacgggtct tcgccggttt ccgggcgata ggagaaggcc gggtgctcgg gcgcgtcggc
      361 caggttcaac ggccggccgg ccttcatgat ctcgccgacc aggccttcgc cgggcttcat
      421 gcgggtgatg tggacggcgg cgggatcgag gccttcggtg gcgaacaact ccatctcgcc
      481 ggccgagcgg cgcatgtaga gcgagcacac ttcggcgacc atggaccgcg cgatgatccg
      541 cacgaccatg tccaggcgcg tctgcgccgg gccgcccccg gcaagggcct cccggatctg
      601 ccgcagcaga cttcgctgac cgcgaatggc tacgccaggc tgcgccatct aacccctttg
      661 tcctccctca tgcttttccg ctccctagca ggtttgtgtc tctgaacgga gacggaaagg
      721 gttgagttcg ccgtttcgcc cggatgctca gcaatcgggc gcctcaacct tctcctctcc
      781 cgagccgcta cgcacctggg aggggagcgg ggcgatcctc cggcttgtcc agcggctaac
      841 tcgacgcggg ccatcgaatg cccacagcgt acattctgaa cgtccgcaac gggtgggaag
      901 cagaactagg cctcacgccc cgggcatcat agaaaccacc gacagctggt ttcacacgca
      961 ggctcgcaac atggaaaagc ttgacgaccc agtccgccag cgccgctcat cgccggtggc
     1021 cgcggcgcgc acggctgggg acacgggcac gccggcgggc ggcgagaccg tgggcttgcg
     1081 cagcttcctt ggacgtcacg agcgcgcggc gttcgtcctc ctgctggtcg tgggcctcat
     1141 ggcccgagtg gtctgggtga gccagcacga acgcttggga cccatgatct gcgaatcgta
     1201 tcaggccgcc atctgcttcg cccgcaccgg cggcatctgc gacacctact tgccaggaca
     1261 gggactgacg gcgaccgcca cgcccgtcat gcccgtgatc gacggcctgg tctatcgcgc
     1321 cttcggcgtg ggctcacggg cgtcggagat ggtgctgacg gccttttctc tcaccttcct
     1381 gtgcgcgacg ctcctggccc tgtatctcgc gttccgccgc ctgcggctcg ctgtcgaatg
     1441 gcgtctcgcc gcccttgccg cggcgctgct cctgccgata aacttcaaat gggaaacggt
     1501 gagcatgcgt ctcttcgaag gcggcatggc ggcggcgctc ctggctgtca gcctgctcct
     1561 cgtcctgcgc ctcgacgcct ctcgcgagcc gttgcgcccg cgcgactttt ccctgccggc
     1621 ggtcctggtc ggcttccttg cgctgatcaa tccgcccgcc gccttgggcg cttatggtgc
     1681 gctgggcgtc ctcaccctga agcgggtccc gatgcgccgc tggctgggag tcgccctggt
     1741 gatggccgtg ggcctggcgg tgttcatcgc cccatggggt ctgcgcaacg agcgggtgtt
     1801 cggccggctg atcctgacgc gcagcaactt cccgctggaa cacgccatcg gtttccattc
     1861 ggaggcggtg tccccggcca accccgccgc tgtcttcgtc cgccgcggcg ccgcgatcca
     1921 tccctactca agcgatcccg cttcgccggg gcgggctgag ttcgcgcgca tcggcgagct
     1981 cgcctatatg gaccggctcg ccgcggagac caccgcctgg gagcgggccc acccactcga
     2041 cacggttcgc ctcgccgcgc gacacctggt ggagttctgg ctgcccccca ggtggtcgtg
     2101 gaccatcttc ggcaacgccg cgccgctcgt cttgacccgc caagctttca tctgggccac
     2161 cacgctcgcc gccttcgccg cgatcgtctg gcgtctcgtc caggcgccgc tggggccggg
     2221 actctacctc gcatgcgtgc tgcttatccc ttcactccct tacgcgctgg tccagccggt
     2281 ccagcgctac cgatatctgg tggtggttct gacttacttt ttggccgctg acttcgctgc
     2341 ccgggtggcg gcctacgtgg cgaagcggcg cctctcaagg caggtcacac ctcgaccgcc
     2401 aattgccgga aagcggacct acagctaatt ctccttcgcc gaccgcgatg cccgcggaga
     2461 cccccgtgta gaggtgcgag cgcgtggcga agctcatctt cggaatgatg cagtccctgg
     2521 acggctacgt cgaccacctg gaattgccgc cgcccggcgt ctccctgcac cgtcatttca
     2581 acgatcacgt ccgcggactg gccggcggcc tgtatggtcg tcgcatgtac gaggtgatgc
     2641 gctactggga cgaggatcag ccggattggg atgcggtcga ccacgacttc gccgcggttt
     2701 ggcgggcgca gccgaaatgg gtcgtctctc gctcgctgac gtcggtcggc cccaacgcga
     2761 cgctggtcgc tgacgacgtc gaagggttcg tgcgccggct gacggcggac gtcgagggcg
     2821 acatcgacgt cgccggcccg gagttggccg ggagcctcac cgacctcggc ctcatcgacg
     2881 agtatcgtct ctacttccgc ccattcgtcc tcggccgggg caagccgtac ttcgccgggg
     2941 cgcggccgcc gctccgactc atcgccagcg acgccatccc cgaggacgcg gtcaggctga
     3001 cgttcgtccc tgcctagagg tccgcgacgg gtcgggagcg gaccttgccc acgcacccga
     3061 aagcgggcgc ccaccgacac ctcctgccgc gagggaaggg ggcccacttg ggcgtctcgc
     3121 caaggaagct tgagctttgg cctccccggc ctcatcgtcc cggccaacga gaacagagtc
     3181 cttgggggga cgccatgctg cgcaaatggg gcttcttcat cctgggcctg gtgctgatcc
     3241 tgggcggatc gtacctggcg agcgccatcc ag
//
LOCUS       DATAJL010000051         3282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13786,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000051 DATAJL010000000
VERSION     DATAJL010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13786"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..803)
                     /locus_tag="VHN39_00885"
     CDS             complement(<1..803)
                     /locus_tag="VHN39_00885"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEX2814918.1"
                     /translation="MDRIAITGGARLQGEIPISGAKNSAIKLMAASLLTEESLRLTNM
                     PRLADTRFMGKILQRLGTEVVEAEGEDGPETLLRTAEITSGFAPYDLVRQMRASFNVL
                     GPLLARTGQAKVSLPGGCTIGARPVDLHLKALEALGARIDLHEGYVYAQAPRGLKGAI
                     IEFPFNSVGATEHAMLAAVLAEGETVLANSACEPEMIDLADCLNAMGAKVVGAGTSTI
                     RIQGVSRLHGATHAVMPDRIETGTYAVAAAMAGGEVRLTRTRSDFIQAL"
     gene            complement(900..1088)
                     /locus_tag="VHN39_00890"
     CDS             complement(900..1088)
                     /locus_tag="VHN39_00890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814919.1"
                     /translation="MTTRTQRRTPWRMAPSDKDPRPKPLSREQQLAQALRANLQRRKA
                     GERKLGSATPKGKSADEG"
     gene            1156..1230
                     /locus_tag="VHN39_00895"
     tRNA            1156..1230
                     /locus_tag="VHN39_00895"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1188..1190,aa:Thr,seq:ggt)
     gene            1786..2352
                     /locus_tag="VHN39_00900"
     CDS             1786..2352
                     /locus_tag="VHN39_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2239 family protein"
                     /protein_id="HEX2814920.1"
                     /translation="MWAFQTGNLTAFAGSRLIARGDLAAVVSAAHANRDASPLIFDDA
                     TGRIIEFDLRGSVEEVLARLPAPTAPSKPARGRPKLGVTAREVTLLPRHWDWLASQSG
                     GASAALRRLVDQARRETVDADARREAQEVTYRVMTTMAGDLPGYEEATRALFANDRTR
                     FDQLTASWHADIGDYVRELNARADGPSA"
     gene            complement(2321..2524)
                     /locus_tag="VHN39_00905"
     CDS             complement(2321..2524)
                     /locus_tag="VHN39_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814921.1"
                     /translation="MPAEAARGCSLYLLPQSPTQADLEIGYATRGAQVVACDAARALA
                     VQTHAAEHLLEDQITPKGRQPSH"
     gene            complement(2514..3128)
                     /locus_tag="VHN39_00910"
     CDS             complement(2514..3128)
                     /locus_tag="VHN39_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814922.1"
                     /translation="MSDDEIIKEAREAFELAVDAEAENRRDALDDLRFARLGEQWPAE
                     IKRERDLVPHQLRFQDAAAGPDAPGRRRLWAGAAGMSPRLMLILAGMASVLALAAGLY
                     WKGRHDDAVHERPKTEAALAQAAVAGLETQGAQASAQRVDVVVHQRDAANSVVAQLMP
                     QALKSEDANAPLDPARAARLRDADRQLCLTAPGLAGCAPSGNAR"
BASE COUNT          508 a         1129 c         1098 g          547 t
ORIGIN      
        1 atcaacgcct ggatgaaatc gctgcgggtg cgagtcagcc tcacctcgcc gccggccatg
       61 gccgcggcca ccgcgtaggt gccggtctcg atgcggtcgg gcatcaccgc atgggtcgcg
      121 ccgtgcagcc ggctcacacc ttggatgcgg atcgtcgaag tccccgcccc gacgacctta
      181 gcgcccatgg cgttcagaca atcggccaga tcgatcatct ccggctcgca ggccgaattg
      241 gccagcaccg tctcgccctc ggccagcacg gcggccagca tggcgtgctc ggtcgcgccg
      301 acagaattga aggggaactc gataatcgcc cccttcaggc cgcgcggcgc ctgggcgtag
      361 acatagcctt cgtgcaggtc gatccgcgcc cccagcgcct caagcgcctt cagatgcaag
      421 tccaccggcc gtgcgccgat cgtgcagccg ccgggcagcg agaccttcgc ctggccggtg
      481 cgggccagga gcggtcccag cacattgaag gacgcccgca tctggcggac caggtcgtag
      541 ggcgcaaagc cgctggtgat ctcggccgtg cggagcaggg tctccggccc gtcttcgccc
      601 tccgcctcga cgacctcggt ccccagccgc tgcaggatct tgcccatgaa ccgagtgtcg
      661 gccagccgcg gcatgttggt cagccgcagg gactcttcgg tgagcaggct cgccgccatc
      721 agcttgatgg ccgagttctt ggcgccgctg atggggattt ccccctgcag ccgcgcgccg
      781 ccggtgatgg cgatgcggtc caatccagat ccttcgaggc ggccgcaaag tcggggagtc
      841 gcgtaaggcg gcgcgagcgt caatatctag cgtgcgggcc ggcccgcgca aaggcccgct
      901 cagccctcgt ccgcgctttt ccccttgggc gtcgcggaac ccagcttgcg ctcgcccgcc
      961 ttccgccgct gcaggttggc gcgcagcgcc tgcgcgagct gctgttcgcg gctgagcggc
     1021 ttcggtcttg ggtccttgtc ggacggcgcc atgcgccaag gggtgcggcg ctgggtccgt
     1081 gtcgtcaagg gcggccggcg tggattgggg cttcacgcgg cccccggcgt tggctatagc
     1141 cccgcctcgc ctttcgccgc gatagctcag tggtagagcg catccttggt aaggctgagg
     1201 tccagggttc gaatccctgt cgtggcacca ctacaaagaa gccccgcggc gcaagctgcg
     1261 gggctttttc aactgggagg ccattcgcca gcttggactt ccgtcaatcg gagttccaca
     1321 ggcgcccaca gtaaccttgg aaatgtgtcc ggctgatcgc gctggttcgc ctcaaacgac
     1381 ggacggttgt cattggggtc ggccacggct agaacaaaat cagaacttca ctgacccctt
     1441 gcgcgcccgt gaggctttgt agttgtgaag cgaaggggcc tcaaaatctg gctcggagtg
     1501 tcgcctgtcc ccactgtccc atacgtggat tgcaatgccg cctgcgggtg atctcagata
     1561 ccagcgcgta agcgcgtctc catccaggcg cgcggggtcg atctggccgt aagccatgcg
     1621 tggtctcctc ctaggattga ttggagatgc tggggcgcca cccaggcggc caagccggcg
     1681 gtgttggggg tgaggcgcag gacttgcgca acgttttcgg acctgtttcc gggcgcagga
     1741 tgatgctata tttcacccgg gcagaaatgg tgttcaggaa ttagggtgtg ggcttttcag
     1801 acaggcaacc tcacggcttt cgccggctct cggctgatcg cacgtgggga tttggctgcc
     1861 gtcgtcagcg ccgcccacgc aaaccgcgac gcgtcgccac tgatcttcga tgatgcgacc
     1921 ggtcggatca tcgagttcga cctgcgaggt tcggtagaag aggtcctggc ccgactaccg
     1981 gcgccgaccg cgccctccaa acccgcccgc ggccgcccaa agctcggcgt caccgcccgg
     2041 gaggtcaccc tcctgccgcg ccactgggac tggctcgcaa gccagtcggg cggcgcgtcg
     2101 gcggctctgc ggcggcttgt ggatcaggcg aggcgcgaga ctgtcgatgc ggacgcacgg
     2161 cgcgaggcgc aggaggtgac ctaccgggtc atgaccacca tggccggcga tctccctggc
     2221 tacgaggaag ccacccgggc cctgttcgcc aacgaccgca ctcgcttcga tcaactgact
     2281 gccagttggc acgcggacat cggcgactac gtgcgcgagc tcaatgcgag ggctgacggc
     2341 ccttcggcgt gatctgatcc tccagcaaat gctcggcggc gtgggtctgc acggccaagg
     2401 cccgcgctgc atcgcaggcg accacctggg cgcctctcgt cgcatatcca atttcgaggt
     2461 ccgcctgagt tgggctttgc ggcagcaggt agaggctgca gccccgcgcc gcctcagcgg
     2521 gcatttccac tcggggcgca gccggcaagg ccgggagccg tgaggcacag ctggcggtca
     2581 gcgtcgcgca ggcgagcagc gcgggcaggg tcgagcggcg cattggcgtc ctccgatttc
     2641 agagcttggg gcatgagctg ggcgacgacg ctgttggcgg cgtcccgctg atggacgacc
     2701 acgtcgaccc gctgggcgct ggcctgcgcg ccttgggtct ccaggcccgc caccgccgcc
     2761 tgggcgagcg cagcctcggt cttcggccgt tcatggaccg cgtcgtcgtg gcggcccttc
     2821 cagtagaggc cggcggccag ggcgagcacc gacgccatgc ccgcgaggat cagcatgaga
     2881 cgcgggctca tgccggcagc cccagcccat agccgccgcc gtcccggcgc gtcaggacct
     2941 gccgccgcat cctggaatcg aagctgatgt ggcaccaggt cccgctcccg cttgatctcc
     3001 gccggccact gctcgccgag cctggcgaac cgcaggtcgt ccagcgcatc gcgccggttc
     3061 tcagcctccg cgtccaccgc caactcgaac gcctcgcggg cttccttgat gatctcgtcg
     3121 tcggacaagg cctgaccccc aaaagaagca catggcaaaa ggcccgcgcg agcgaacccg
     3181 gcgggtggaa aagcggcccg cgcccacccg ggagccgaac cgcaaaaatc tatcgaaaac
     3241 cgccggcctg gccgccgctc atcgccccca agggcggagc gg
//
LOCUS       DATAJL010000052         2321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26687,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000052 DATAJL010000000
VERSION     DATAJL010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26687"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VHN39_00915"
     CDS             complement(<1..191)
                     /locus_tag="VHN39_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814923.1"
                     /translation="MTFKRNALALILGVTTLGAMSATAASAQPLAPPARQEIAQHREQ
                     IRGEERRGEISRVQAHRMRV"
     gene            complement(339..842)
                     /locus_tag="VHN39_00920"
     CDS             complement(339..842)
                     /locus_tag="VHN39_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2814924.1"
                     /translation="MNGITVRATTLADAPAILDLHLAAAARGGGLAREPDEMSLAPIE
                     AVLSKALATGVALSAWSDGAIAGEIHASRLGPRQFDNSLTELTVAVHPDFQGQGVGAA
                     LFEALFAEARKLSGLTRVELMCREGNHRAVRLYQRLGFVIEGRFIRRVVLADGTVEDD
                     LAMAKFL"
     gene            complement(839..1438)
                     /locus_tag="VHN39_00925"
     CDS             complement(839..1438)
                     /locus_tag="VHN39_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007675747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding negative transcriptional regulator"
                     /protein_id="HEX2814925.1"
                     /translation="MHPAPYHQEEGATKLAAHLQDYSFVTLCVVGEGRPLVVQVPVVL
                     RRLAEGLALDFHVAKRNAVAPFLVEGVRAVVMSAGPHAYVSPDWLAGHNEVPTWNYVS
                     VEAEGPLTPLGREDLIALLDDLTLQEEAHLAPKKPWTRDKADPGYIERLMGAIVGARL
                     HVERLEGTTKLSQNKSEDDRAAVIAALGDNAIAGLMRGG"
     gene            complement(1443..2177)
                     /locus_tag="VHN39_00930"
     CDS             complement(1443..2177)
                     /locus_tag="VHN39_00930"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEX2814926.1"
                     /translation="MTVPPLEFIEAPSPNFDARTAPPEILVLHYTGMKTGPEALDRLR
                     DPKAKVSSHYMVEEDGRIFRLVPEERRAWHAGVSYWKGARNINGVSIGVEIVNPGHEF
                     GYRPFPDAQIAAVIALVADIRSRWQIRDDRIVGHSDVAPARKDDPGELFPWKRIAEAG
                     HGLWVDAQPAPGEPLAEGAEGVGVFALQAGFTRLGYDLPPSAKFDAATKAVVVAFQQH
                     WRQDKVDGVADGKTRAQLMALLRLAG"
BASE COUNT          342 a          797 c          822 g          360 t
ORIGIN      
        1 acgcgcatgc ggtgggcttg aacgcggctg atctcgccgc ggcgctcctc gccacggatc
       61 tgctcgcggt gctgggcgat ctcctggcgg gcgggcggcg cgagcggttg agcggaggcc
      121 gcggtggcgc tcatggcgcc cagggtggtc acgcccagga tcagagccag cgcgttgcgt
      181 ttgaaggtca tgtcgcagtt cctttagtca ggttccgctt gcgcggcggg ccgaagccgt
      241 cgccaagccc gcacaagatg ggcctcacgc cctgaaccct atctgagagc taggaattga
      301 cgccgttcag cctccgggcg gaattgtggc gttgctggct agaggaattt cgccatggcc
      361 agatcgtcct cgaccgtccc gtcggccaga accacgcgcc ggatgaagcg gccctcgatg
      421 acgaagccca ggcgctggta gaggcgcacg gcgcggtggt tgccctcccg gcacatcagt
      481 tcgacccggg tcagccccga gagcttgcgg gcctcggcga acagcgcctc gaacagcgcc
      541 gcgccgacgc cctggccctg aaaatccgga tgcaccgcca cggtgagctc ggtgagactg
      601 ttgtcgaact ggcgcgggcc gaggcgcgag gcgtggatct cgccggcgat cgcgccgtcc
      661 gaccaggcgc tgagcgccac gccggtcgcc agcgccttgg agagcaccgc ctcgatgggc
      721 gccagcgaca tctcgtccgg ctcacgggcg aggcccccgc cgcgcgccgc ggccgccaga
      781 tgcagatcca ggatcgccgg cgcgtcagcc agcgtcgtgg cgcggacggt gatcccgttc
      841 atccgccgcg catcaggcca gcgatggcgt tgtcgccgag ggctgcgatg acggccgcgc
      901 ggtcgtcctc tgacttgttc tgcgacagct tggtcgtccc ctccagccgc tcgacatgca
      961 ggcgggcgcc gacgatggcg cccatcagcc gctcaatata gccggggtcg gccttgtcgc
     1021 gggtccaggg cttcttgggc gcgaggtggg cttcctcctg cagggtcaga tcgtccagca
     1081 gggcgatgag gtcctcgcgg cccagcggcg tcagcggacc ctcggcctcc accgatacat
     1141 agttccaggt cggcacctcg ttgtggccag ccagccaatc ggggctgaca taggcgtgcg
     1201 gcccggcgct catcaccacg gcgcggacgc cctccaccag gaacggcgcg acggcgttgc
     1261 gcttggcgac atggaagtcc agcgccaagc cctccgccag ccggcgcagc acgaccggga
     1321 cctgcaccac caggggccgc ccctcgccca caacgcacag ggtcacgaaa ctgtagtcct
     1381 ggaggtgggc cgccagcttc gtggcgcctt cttcttgatg gtacggggcg gggtgcatca
     1441 ggtcagccgg ccagtctcag gagcgccatc agttgggcgc gggtcttgcc gtcggcaacg
     1501 ccgtcgacct tgtcctgccg ccaatgctgc tggaaagcca caaccaccgc cttggtggcc
     1561 gcgtcgaact tggccgacgg cggcaggtcg tagcccagcc gcgtgaaccc ggcctgcagg
     1621 gcgaacacgc cgacgccttc cgcgccctcg gccagcggtt cgccgggcgc gggctgggcg
     1681 tcgacccaca gcccatggcc ggcctcggcg atccgcttcc aggggaagag ctcgccggga
     1741 tcgtccttgc gcgccggcgc cacgtcggaa tggccgacga tgcggtcatc tctgatctgc
     1801 cagcggctgc ggatgtccgc gaccagcgcg atcaccgcag cgatctgggc gtcggggaac
     1861 gggcggtagc cgaattcgtg gccggggttg acgatctcca cgccgatcga gacgccgttg
     1921 atgttgcgcg cgcctttcca gtaggagacg ccggcgtgcc aggcgcggcg ttcctcgggc
     1981 accaggcgga agatgcggcc atcctcctca accatgtagt gcgagctgac cttggccttc
     2041 ggatcgcgca ggcggtcgag cgcctcggga ccggtcttca tgccggtgta gtgcagcacc
     2101 aggatttccg gcggcgccgt gcgggcgtcg aagttggggc tgggcgcctc gataaactca
     2161 agagggggga cagtcattgc gcgcggttcc ggatggcgag cagcagcggc atgacctggt
     2221 tcctgcgcag cgcgatgatc aggacgccgc taagcgcgat cgccgtgccc gcggccatgc
     2281 gcgcgccgaa cggatcttgg gtgatcgcaa cgccgagcgc g
//
LOCUS       DATAJL010000053         4978 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13796,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000053 DATAJL010000000
VERSION     DATAJL010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4978
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13796"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1568
                     /locus_tag="VHN39_00935"
     CDS             <1..1568
                     /locus_tag="VHN39_00935"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEX2814927.1"
                     /translation="DGKTKQSAPSECIEQCLQSKSAKRLADWEAKSLAIETSNQEFYR
                     FYHQSLEDMGALRLPLEGTDHLEFVPAAGIPWFVGLFGRDSLIVSLQNAMVYPDFPRG
                     SLEVLGRLQARKRDDYRDAEPGKIMHELRTGELAHFKLIPHTPYYGTADATPLYLIVL
                     HNAWRSTGDDDLLTRHLPTAERCLAWIDKYGDRDGDGFQEYQTRSTAGYENQGWKDSG
                     EALVYPDGSLVKGPKALCELQGYVYDAWRRMAEIYDALGKPRRSAALRAKATTLFRKF
                     NEQFWDEESGFYAFALDGDKKPVLSVASNPGHCLWSGIVPRERAARVVKRLMADDMWS
                     GWGIRTLSSKHPAFNPHSYQNGSVWPHDNGLIALGFRRYGFAEEAAKVARDVSRAGGY
                     FEQHRMPELYAGLQRNATNFPVQYLGANVPQAWAAGSCFWLLQAMLGIQPDAPAGKLY
                     LDPALPEWMPDIELKNLQVGRRSFDIRFIRRDDGKTTWDVLRGDRRAISQRAIATYGG
                     EEPATADAASVPA"
     gene            1565..2119
                     /locus_tag="VHN39_00940"
     CDS             1565..2119
                     /locus_tag="VHN39_00940"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR01313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046316 - gluconokinase activity [Evidence
                     IEA];
                     GO_process: GO:0046177 - D-gluconate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEX2814928.1"
                     /translation="MRARRPTLPPGPATVLVMMGVSGAGKTTVGEALAKRLGWTFQEG
                     DDFQPRANIAKMESGRPLDDADRAPWLAKVEAWIADEFAAGRSGVITCSALKRTYRSA
                     IIGSRDDVILVYLKGSEQLIAQRLGKRRGHFMPPSLLASQLAALQAPAPLEKPIVVNI
                     DQPIAAQVDDVVKALARRRRAAAS"
     gene            complement(2134..2940)
                     /locus_tag="VHN39_00945"
     CDS             complement(2134..2940)
                     /locus_tag="VHN39_00945"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2814929.1"
                     /translation="MTEKPLAGQRVVITGASSGIGAGMALGFAEAGAVVLVNHHGQAD
                     AAEAIVRQIIDKGGQALASEGDVSRPADVAGMFDIAAEHFGGVDILVANAGIQKDAAF
                     TEMTLEDWRAALDVDLTGAFLCAQEAVRRFRSQGLDPTRSKALGKVLFTSSVHQVIPW
                     AGHANYAAAKGGVKMLMETMAQELAPEKIRVNAIAPGAIKTPINKAAWDTPAAKASLL
                     KLIPYGRIGEPQDIAAAAIWLASDAADYVVGTTLFVDGGMTLYPCFAHNG"
     gene            complement(3094..3576)
                     /locus_tag="VHN39_00950"
     CDS             complement(3094..3576)
                     /locus_tag="VHN39_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEX2814930.1"
                     /translation="MEELDALAAEVGERLKAAEQTVAVAESSSGGLISAALLGVPGAS
                     KYYLGGAVVYTGKARMVLMDLPREAVAGMRSASPPYAMLLARTARERFGANWGLSETG
                     AAGPTGNGYGDAAGHTCIAISGPIELAITVETGESDRAANMVAFAAAALELLKRGMGA
                     "
     gene            3689..4921
                     /locus_tag="VHN39_00955"
     CDS             3689..4921
                     /locus_tag="VHN39_00955"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2814931.1"
                     /translation="MDAQSQWTGLDAQRLERIGEHLERSYLANGKIAGCQVSVARHGH
                     LAYFKSFGQMDLERGKATADDTIYRIYSMTKPITSVALMTLYEQGYFQLNDPVSRYVP
                     SWKNHRVWVSGQGADMKTEAPTRPVSFRDVLSHMAGLTYGGGLPGVGLQHPIDQIYRD
                     LKVRSVGGRDTMQAFLDKLSQVPLRYQPGTAWMYSLATDVCGALVEVISGVPLAKYLQ
                     DVIFAPLGMKDTAFFVAPDKVERFAANYERGPDKRLKLIDDPATSAFITEPGFKSGGG
                     GLTGTSADYMRFCEMLRRGGELDGARILGPRTLEVMHMNHLPGGKDLTQLAIGGFSET
                     ANEGVGFGLGFASTMDQVRTGGLGAGDYYWGGAASTIFWVDDVEDLVVVLMTQLMPSG
                     AFNFRGQLKSIIYSSIVE"
BASE COUNT          815 a         1741 c         1635 g          787 t
ORIGIN      
        1 ccgacggcaa gacgaagcag agcgcgccca gcgagtgcat cgagcagtgc ctgcagtcga
       61 agtccgccaa acgcctcgcg gactgggagg ccaagagcct agcgatcgag accagcaatc
      121 aggaattcta ccgcttctac catcagtccc tcgaggacat gggcgctctg cggctgccgc
      181 tggaagggac cgatcatctg gagttcgtac ccgcggccgg cattccctgg ttcgtcggcc
      241 tgttcggacg cgacagtctc atcgtctcgc tgcagaacgc catggtctac ccagacttcc
      301 ctcgcgggtc gctggaggtc ctgggacgtc tgcaggcccg caagcgcgac gactaccgcg
      361 acgccgagcc gggcaagatc atgcacgagc tgcggaccgg cgagctcgcc cacttcaagc
      421 tcatccccca cacgccttac tacggcaccg cagacgcaac gccgctctat ctgatcgtgc
      481 tgcacaacgc ctggcggtcg acgggagacg acgatctgct gacacggcac ctgcctacgg
      541 cggagcgatg cctggcatgg atcgataaat acggcgaccg cgacggcgac ggtttccagg
      601 aatatcaaac gcggtccacg gcgggttacg agaaccaggg ttggaaggat tccggcgagg
      661 ctctggtgta cccggatggg tcgctggtta aggggcccaa ggcgctctgc gagctgcaag
      721 gctatgtcta cgacgcttgg cgccgcatgg cggaaatcta cgacgcgctg ggcaagccaa
      781 gacggtccgc ggcgctaagg gcaaaggcca cgaccctatt ccggaagttc aacgaacagt
      841 tctgggacga ggagtcgggc ttctatgcct tcgccctcga tggcgacaag aagccggtgc
      901 tcagcgtcgc ctccaatccg ggccactgcc tgtggtccgg tatcgtgccg cgcgagcgcg
      961 ccgcgcgggt ggtgaagcgg ctgatggcgg acgacatgtg gagcggctgg ggcatccgca
     1021 ccctgtcgtc gaagcaccct gcgttcaatc ctcactccta ccagaacggc tcggtctggc
     1081 cgcacgacaa cgggctcatc gcgctcggct tccggcgcta cggttttgcg gaagaagccg
     1141 cgaaggtcgc acgcgacgtg agccgggctg gaggatattt cgaacagcac cggatgccgg
     1201 agctttatgc cggcttacag cgcaacgcca ccaactttcc ggtccaatac ctgggggcca
     1261 acgtgcctca ggcctgggcg gcggggtcgt gcttctggct gctccaggcc atgctgggca
     1321 tccagcccga cgcgccggcg ggaaagctct atctggaccc ggcgctaccc gaatggatgc
     1381 cggacattga gctgaagaac ctgcaggtcg gacgccgcag cttcgacatc cggttcatcc
     1441 gccgcgacga cggcaagacc acctgggacg tgctgcgggg cgaccggcgc gcgatctcgc
     1501 agcgggcgat cgcaacctat ggcggagagg agcccgccac agccgatgca gcctcagtgc
     1561 ccgcatgagg gcgcgccgac cgacgctgcc gcccggtccg gcgacagtcc tggtgatgat
     1621 gggcgtctcg ggcgccggca agaccaccgt cggcgaggcg ctggccaagc ggctcggctg
     1681 gacgttccag gagggggacg atttccaacc ccgggcgaac atcgccaaga tggagtctgg
     1741 ccggccgctt gacgacgccg accgggcgcc ttggctggcc aaggtggagg cctggattgc
     1801 cgacgagttc gcggcgggcc ggtccggcgt catcacctgc tcggcgctga agcggaccta
     1861 ccgcagcgcc atcatcggta gccgtgacga tgtcatcctc gtctatctga agggcagcga
     1921 gcaactcatc gcacagcggc tcgggaagcg gcgcggccac ttcatgccgc ccagcctcct
     1981 ggccagtcag ttggccgcgc tgcaggcgcc cgctccgctg gagaaaccaa tcgtcgtgaa
     2041 catcgaccag ccgatcgccg ctcaggtcga tgacgtcgtc aaggcgctgg cgcggcgccg
     2101 acgcgcggcg gcgtcctagg cgtcaacggc cggtcagccg ttgtgggcga agcaagggta
     2161 gagggtcatc cccccgtcga cgaacagcgt cgtgccgacc acatagtccg cggcgtcgga
     2221 cgcgagccag atcgcggccg cggcgatgtc ctggggctcg ccgatccgcc cgtaggggat
     2281 cagcttcagg agactcgcct tggccgccgg cgtgtcccag gcggccttgt tgatcggggt
     2341 cttgatggcg cccggtgcga tggcgttgac gcggattttc tcgggcgcga gttcctgcgc
     2401 catcgtctcc atcagcatct tcaccccgcc cttcgccgcc gcgtagttgg cgtggccggc
     2461 ccaggggatc acctggtgca cggagctggt gaacagcacc ttgcccagcg ccttcgagcg
     2521 cgtgggatcg agtccttggc tgcggaaccg gcgcaccgcc tcctgagcgc agaggaaggc
     2581 gcccgtcagg tccacgtcga gcgccgcgcg ccaatcctcc agggtcatct cggtgaaggc
     2641 ggcgtccttc tggatgcccg cgttggccac caggatgtcg accccgccaa aatgctcggc
     2701 ggcgatgtcg aacatgccgg cgacgtcggc ggggcgcgat acatcgcctt ccgaggcgag
     2761 ggcctggccg cccttgtcga tgatctgacg aacgatggct tccgccgcgt cggcctggcc
     2821 gtgatggttc accagcacga ccgcgccggc ctcggcgaag cccaaggcca tgccggcccc
     2881 gatcccggaa ctggcgccgg tgatgacgac ccgttggccg gcgagcggct tctctgtcat
     2941 gcgacattcc ggtctggtgc tgatccggcg cagcgagcgc cggagggatc gacggtgaag
     3001 tccccggcga aacgcgcaac ctggccgaag gtccatgggc ggcgagcgac agggcgaaca
     3061 ggcgccgtcg ccgtggacgg ccgtgacggc ggtctaggcc cccatccccc gcttcagcaa
     3121 ctccagcgcc gccgccgcga acgcgaccat gttggcggcg cgatcgctct cgccggtctc
     3181 caccgtgatg gccagttcga tcggcccgga aatcgcgatg caggtgtggc cggccgcgtc
     3241 gccgtagccg ttgcccgtcg gccccgccgc gccggtctcc gacagccccc agttcgcgcc
     3301 gaaccgctcc cgtgccgtcc gcgccagcag catggcgtag ggcgggctgg ccgaacgcat
     3361 gccggccacc gcttcgcgcg gcaggtccat cagcaccatg cgcgccttgc ctgtgtagac
     3421 caccgccccg cccagatagt acttcgacgc gccgggcacc cccagcagcg ccgccgagat
     3481 caggcccccc gacgagctct ccgccaccgc cacggtctgc tcggccgcct tcagccgctc
     3541 gcccacctcc gccgcgagcg cgtccagttc ctccatgggg aatctccttt ttcgctggcg
     3601 gcgccggcct ttttcttggc gagccgccgc ttcggcgccc atgatgctcg ccaattagaa
     3661 cagacgccat ttcccgggag gatatttcat ggacgcccaa tcacagtgga ccggccttga
     3721 cgcgcagcgc ctggagcgca tcggcgagca cctggagcgc agctacctcg ccaacggcaa
     3781 gattgccggc tgccaggtca gcgtcgcccg ccacgggcac ctggcctact tcaagtcctt
     3841 cggccagatg gatctggagc gcggcaaggc caccgccgac gacaccatct accgcatcta
     3901 ttcgatgacc aagccgatca cctcggtggc gctgatgacc ctctatgagc agggttattt
     3961 ccagctcaac gacccggtca gccgctacgt cccctcttgg aagaaccacc gcgtctgggt
     4021 ctccggccag ggcgccgaca tgaagaccga ggcgcccacg cggcccgtct cgttccgcga
     4081 cgtgctatcc cacatggccg gcctgaccta tggcggcggc ctgcccggcg tcggcctcca
     4141 gcaccccatc gaccagatct accgcgacct gaaggtccgc tcggtgggcg ggcgcgacac
     4201 catgcaggcg ttcctcgaca agctttccca ggtgccgctg cgctaccagc cgggcacggc
     4261 ctggatgtat tccctggcca ctgacgtctg cggcgccctg gtcgaagtga tctccggcgt
     4321 gccgctcgcc aagtacctgc aggacgtgat cttcgcgccc ctgggcatga aggacaccgc
     4381 cttcttcgtg gcgcccgaca aggtcgagcg cttcgccgcc aactacgagc gcgggcccga
     4441 caagagactg aagctgatcg acgatccggc gaccagcgcc ttcatcaccg agcccggctt
     4501 caagtccggc ggcggcgggc tgaccggtac gtcggccgac tacatgcgct tttgcgagat
     4561 gctgcgccgg ggcggcgagc tcgacggcgc gcgcatcctc gggcctcgca ccctggaggt
     4621 catgcacatg aaccatctgc cgggcggcaa ggacctgacg cagctcgcca tcggcggttt
     4681 ctcggagacc gccaacgaag gcgtgggctt cggcctcggc ttcgcctcga ccatggacca
     4741 ggtgcgcacc ggcggcctcg gcgccggcga ctactactgg ggcggcgcgg cctcgaccat
     4801 cttctgggtc gacgacgtcg aggacctggt tgtggtgctc atgacccagc tgatgccatc
     4861 gggcgccttc aacttccgcg gccagctgaa gagcatcatc tattcctcga tcgtggagta
     4921 ggcgggacgc ggtcaggcgc gaaacgcgag gctcctgacc tcccgctcgg ccccaagc
//
LOCUS       DATAJL010000054         4195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52391,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000054 DATAJL010000000
VERSION     DATAJL010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4195
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52391"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..366)
                     /locus_tag="VHN39_00960"
     CDS             complement(<1..366)
                     /locus_tag="VHN39_00960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01459 family HAD-type hydrolase"
                     /protein_id="HEX2814932.1"
                     /translation="MTAPKLATGLAQLSADYDALLCDVWGVIHNGRESFPEPCAALAR
                     YRASCGPVILISNSPRPRGPVIDQLDGLGVPREAWSHIVTSGDATRLLLAERAPGPAW
                     KIGPDRDDALYAGLGVEFSD"
     gene            complement(421..1674)
                     /locus_tag="VHN39_00965"
     CDS             complement(421..1674)
                     /locus_tag="VHN39_00965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX2814933.1"
                     /translation="MRRLTLGLLCATYLCLSLIVSLTLWRNGGGWGAGVAALVGGLGL
                     CFAFHGLIERALETGAIRSDVEAIREAHKILITQVEALDARLSEVAGEVADDLHRSEE
                     LIDEVHMLERLVQRMEHRLDEHGDETPFPAPLGGDVRQAPALLEVVREALTENRVDLY
                     LQPIVGLPQRRTQFYESFSRLRDETGRVMMPAEYLSVAEPGGLVTAIDNLLLFRCVQI
                     VRRLAKQDRKIGIFCNVALASLGDESFFPQFLDLLTANRDLAGALIFEIGQAAFDARG
                     SVEARNMGKLADLGFRFSLDKVTSLDLDLQDLSRSDVKFLKIGAEYLLEELTEVDGRP
                     VLRSLPDLAAEDFTALARRYGVEVIAEKVEAERQVVDILELNIHYGQGHLFGEPRAIK
                     EAVLTEAGPPPNLVRPQFARRQAYG"
     gene            1869..3362
                     /locus_tag="VHN39_00970"
     CDS             1869..3362
                     /locus_tag="VHN39_00970"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2814934.1"
                     /translation="MAGEHFDVLIVGAGLSGIGAGWHLQTSAPDRSYVILEGREAIGG
                     TWDLFRYPGIRSDSDMYTLGYAFKPWTEARAIADGPSILKYVRETARDFGIDQHIRYG
                     HQVKSAAWSSEDACWTVEALLGDGQAVRITANFVFLCGGYYSYEGGYTPDFPGAARFK
                     GKVVHPQKWPENLDYAGKRVVVIGSGATAVTLVPAMAASAAHVTMLQRSPTYVVSRPA
                     EDAMANRLRKWLPAMLAYGLIRWRNVLGGMWFFRLARNKPEQVKQNIIAMVRQALGPD
                     YDVGKHFTPTYNPWDQRLCLVPDADLFEAIKAGKAEVVTDHIETFTKDGIKLKSGAEL
                     KADIIVTATGLTLQVMNGLKLTVDGRAIDPGKMLAYKGMMYEDVPNLATVFGYTNASW
                     TLKCDLTCEYVCRLLNHMTRTGLRQATPRNHDPNIEPQPWLDFSSGYVQRAMEAFPKQ
                     GSKAPWRLHQNYAMDLMSLRHARLEDGTLEFANRQPAKARARETVAA"
     gene            complement(3359..3499)
                     /locus_tag="VHN39_00975"
     CDS             complement(3359..3499)
                     /locus_tag="VHN39_00975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814935.1"
                     /translation="MAAKKTPRKPSPKPAGKSGPLSDAALDKVTGGAGGGVHPSGGGP
                     GG"
     gene            complement(3591..3713)
                     /locus_tag="VHN39_00980"
     CDS             complement(3591..3713)
                     /locus_tag="VHN39_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814936.1"
                     /translation="MGAISDSVAIITGCTLARAPDLEVYPDDFAPDRAGAWVEW"
     gene            3866..>4195
                     /locus_tag="VHN39_00985"
     CDS             3866..>4195
                     /locus_tag="VHN39_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814937.1"
                     /translation="MALVAAGSLAGAAHAGQITVADFTSPVVQGFGSPNPTAVIGEPL
                     SIANYTFTTPGSTGLIWWAPGNGFNDCVDGCVTTTLDTTSTDGYGLNVDLGGGFALAG
                     LWVGQATP"
BASE COUNT          690 a         1388 c         1455 g          662 t
ORIGIN      
        1 gtcggagaat tccaccccca gtccggcgta gagggcgtcg tcgcggtccg gtccgatctt
       61 ccaggcgggg cccggcgcgc gctcggcgag cagcaggcgc gtggcgtcgc ccgaggtgac
      121 gatgtggctc caggcctcgc ggggcacccc caggccgtcg agctggtcga tcaccgggcc
      181 acgggggcgc ggcgaattgg agatcaggat caccgggccg cagcttgcgc ggtagcgggc
      241 cagcgccgcg cagggctcgg ggaagctctc tcggccattg tggatgacgc cccagacgtc
      301 gcagagcagc gcgtcatagt cggcggaaag ctgggcgagg ccggtggcga gcttgggggc
      361 ggtcatggag cgcgggtagc ggcgtgaccc gccggggtca atgccagctt tcggcttggg
      421 ctagccgtag gcttggcgcc gcgcgaactg cgggcggacg aggttgggtg gcgggccggc
      481 ttcggtgagc acggcttcct tgatggcgcg gggctcgccg aacaggtggc cctggccgta
      541 gtggatgttg agctccagga tgtcgaccac ctggcgttcg gcctcgacct tctcggcgat
      601 cacctcgaca ccgtagcgcc gcgcgagcgc ggtgaagtcc tcggcggcga ggtcggggag
      661 cgagcgcagc accgggcggc cgtccacttc ggtgagctcc tccagcagat attccgcgcc
      721 gatcttcagg aacttcacgt ccgagcgcga caggtcctgc aggtcgagat cgaggctggt
      781 gaccttgtcc aggctgaagc ggaagccgag gtcggcgagc ttgcccatgt tgcgcgcttc
      841 cacggagccg cgggcgtcga acgccgcctg gccgatctcg aagatcaggg cgccggccag
      901 gtcgcggttg gcggtgagca ggtcgaggaa ctgggggaag aagctctcgt cgcccaggct
      961 ggccagggcg acattgcaga agatgccgat cttgcggtcc tgcttggcca gccgccgcac
     1021 gatctgcacg cagcggaaga gcaagaggtt gtcgatggcg gtgaccaggc cgccgggctc
     1081 ggcgacggag aggtactcgg ccggcatcat cacccggccg gtctcgtcgc gcaggcgtga
     1141 gaagctctcg tagaactggg tgcgccgctg cggcaggccc acgatcggct gcaggtacag
     1201 gtcgacgcgg ttttcggtca gcgcctcgcg gacgacctcc agcagggccg gggcctggcg
     1261 cacgtcgccg ccgagcgggg ccgggaacgg cgtctcgtcg ccatgctcgt ccagccggtg
     1321 ctccatgcgc tggaccaggc gctccagcat gtgcacctcg tcgatcagct cttcggagcg
     1381 gtgcaggtcg tcggcgacct cgcccgccac ctcgctcagc cgcgcgtcca gcgcctcgac
     1441 ctgggtgatg aggatcttgt gggcctcgcg gatcgcctcg acgtcgctcc gaatcgcgcc
     1501 ggtttccagg gcccgctcaa tcaggccgtg gaaggcgaag cagagcccaa gcccgcccac
     1561 cagggcggcc acgccggcgc cccagccgcc cccgttgcgc cacagcgtca gggagacgat
     1621 cagcgagagg cacagatagg ttgcgcagag gagcccaagg gtgagccgtc gcatggtccc
     1681 gccatccgaa tcacttgggg tgagtatccg acgggcattc gcggcaagtc gaaggaatta
     1741 acgcagccgc gacgccatgg cgtttgcgct ggatcattgc ggcggtggcc cgagggggcg
     1801 aaatatgtga tcggtgttca gataacccac aggcgagctt gcagatggct gacggaactc
     1861 caggcggtat ggccggcgaa catttcgacg tgctgatcgt cggcgcaggg ctttcgggca
     1921 tcggcgcggg gtggcatttg cagaccagcg cgccggaccg cagctacgtg atcctggagg
     1981 gccgcgaggc catcggcggc acctgggacc tgttccgcta tccgggcatc cgctcggaca
     2041 gcgacatgta caccctgggc tacgctttca agccgtggac agaggccagg gcgatcgccg
     2101 acgggccgtc gatcctgaaa tacgtccgcg agaccgcccg cgacttcggc atcgaccagc
     2161 acatccgcta cggccaccag gtgaagtccg ccgcctggtc gagcgaggac gcctgctgga
     2221 ccgtcgaggc gttgcttggc gacggccagg ccgtccgcat caccgccaac ttcgtcttcc
     2281 tctgcggcgg ctactacagc tacgagggcg gctacacccc cgatttcccg ggcgcggcca
     2341 ggttcaaggg caaggtggtc catccgcaga aatggccgga aaacctcgac tacgccggca
     2401 agcgggtggt ggtgatcggc tccggcgcga cggcggtgac actcgtgccg gccatggcgg
     2461 ccagcgcggc ccacgtcacc atgctgcagc gctcgcccac ctatgtggtc tcgcggccgg
     2521 ccgaggacgc catggccaac cgcttgcgca agtggctgcc ggcgatgctg gcctacggct
     2581 tgatccgttg gcgcaatgtg ctcggcggca tgtggttctt ccgcctcgcc cgcaacaagc
     2641 ccgagcaggt gaaacagaac atcatcgcca tggtccgcca ggcgctgggc cccgactacg
     2701 acgtcggcaa gcacttcacg ccgacctaca acccctggga ccagcggctg tgcctggtgc
     2761 cggacgcgga cctcttcgag gcgatcaagg ccggcaaggc ggaggtggtc accgaccaca
     2821 tcgagacctt cacgaaagac ggcatcaagc tgaagtccgg cgccgagctc aaggccgaca
     2881 tcatcgtcac cgccaccggc ctcaccctgc aggtgatgaa cggcctcaag ctcaccgtcg
     2941 acggccgcgc catcgatccg ggcaagatgc tcgcctacaa gggcatgatg tacgaggacg
     3001 tgccgaacct ggcgacggtg ttcggctaca ccaacgcctc ctggacgctg aagtgcgacc
     3061 tgacctgcga gtacgtttgc cgtcttttga accacatgac gcggacgggc ctgcgccagg
     3121 ccaccccgcg caaccacgac cccaatatcg agccgcagcc ctggctcgat ttttcctccg
     3181 gctacgtcca gcgcgccatg gaggcgttcc cgaaacaggg ctcaaaagcg ccttggcggc
     3241 tgcaccagaa ctacgccatg gacctgatga gcctgcgcca cgcccggctc gaagacggca
     3301 cactggagtt cgccaatcgc cagccggcga aggccagggc gcgcgagacg gtggcggcct
     3361 agccgcccgg cccgccgcca ctcgggtgca cgcccccgcc tgcgccgccg gtcaccttat
     3421 ccagggccgc gtcgctgagc gggcccgatt tgccggccgg cttgggggag ggtttgcgag
     3481 gggtcttctt ggcagccatg ccgtatctcc aatccagaaa gattgagcga tcacagagcc
     3541 tactacgacg gcggcgcttg aaaagacgcg tttcagccct ccaccgggat tcaccactcc
     3601 acccaggcgc cggcgcggtc gggggcgaag tcgtcggggt agacttccag atcgggcgcg
     3661 cgggcgagcg tgcagccggt gattatggcg acactgtctg aaatcgcccc cattccgtga
     3721 ggtccggact tccaaatgat gcgctttggc cgccagaatt cgcgcactgg gcgagttgag
     3781 ttgcacacgg cagggtagtg atcctacgct tcagctctgt tgggggctcg acagggagtt
     3841 ggagatggaa ttgaggcaat tcgctttggc gctcgtggcc gccgggtctt tggcgggcgc
     3901 ggcgcacgcg ggtcagatca cggtggccga tttcaccagt ccggtcgtcc agggcttcgg
     3961 gagtccgaac cctaccgccg tcatcggcga gccgctctcg atcgcgaact ataccttcac
     4021 gacgccgggc tcgaccgggc tcatctggtg ggcgcccggc aacgggttca acgattgcgt
     4081 cgatggctgc gtcaccacga ccctcgatac cacctcaacc gatgggtacg gcctcaacgt
     4141 cgatctcggc gggggtttcg cgctggccgg cctctgggtc ggacaggcga caccc
//
LOCUS       DATAJL010000055         4138 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26728,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000055 DATAJL010000000
VERSION     DATAJL010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26728"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1222
                     /locus_tag="VHN39_00990"
     CDS             <1..1222
                     /locus_tag="VHN39_00990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEX2814938.1"
                     /translation="VCASSQSTKYWAGAIGAADRDKALAAKPKVWKDAPTAPAQYFVD
                     WLDAQTRAAVGTPRQDLIVDTTLDLPSEIAAGDAARTVSSRFAKQGVSQAAVVSLDGF
                     GRVRVLVGGVDYAKGPFNRAIDAHRQAGSAWKPFVYLTAMEAGRTPDMMVVDEPVTIN
                     GWSPRNFEPEFMGSITMEQALAHSINTVAARLADEVGRENVAAVAHRLGIVSQINTDP
                     AMALGTTLVTPLEMAQAYDAFGNGGYRVAAYGIERIRTNGGQVLFQHKAPPYAQAVLN
                     PPLDEMQRMMRTVMASGTGTHAAIPGYDLAGKTGTTSDYKDAWFCGYTGGLVTVVWTG
                     RDDATPMRRITGAMAPSEIWRSYMVTALKHLNNGPIPPGPPPPLPATPTPVVAPAPSD
                     TPPQATPTPAAARP"
     gene            complement(1225..1743)
                     /locus_tag="VHN39_00995"
     CDS             complement(1225..1743)
                     /locus_tag="VHN39_00995"
                     /inference="COORDINATES: protein motif:HMM:NF025710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4402 domain-containing protein"
                     /protein_id="HEX2814939.1"
                     /translation="MKAQNALLLALTAAAMTLSASAASAGTVSATASVSVTILAPVTL
                     QATQGLEFGAVTKPGNSGANTITLDPTNSSVTLSGAGDGARAAGSVSPAKFSLIGEAG
                     ITYSTTQSLSFAQPGLTRVSVSLPVAGNGSLGVIPASGMQELRFGGAFDLDAATPAQA
                     YTGALAVTVNYN"
     gene            1993..3189
                     /locus_tag="VHN39_01000"
     CDS             1993..3189
                     /locus_tag="VHN39_01000"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX2814940.1"
                     /translation="MKTYRIGVIGLGQRIAHVLAAMKEVGWNLHVAGQVDPAPVGASI
                     LAAAGIAEGRVFETPADLLARGPFDLVMIGTPNHLHFEHISLALDAGYPVFAEKPIVR
                     TQAESLALASRLAAGGTPPLYIGLVMRSMPIVREVLARVDGGELGEIISIDATEHLPP
                     EHGGYLARNWRRKAAWGGSYFLDKVCHDFDIFGRIAGARPAKVASFGGRRIFTAERSE
                     SAPRKWDDGEAAYVLHDAGWQGANDAFQSDMDVTDHQTAMIEYENQIRLSFHANSHVG
                     LTERRWYVAGTEGTLIADLVRNRLMVRRALSRQKPERIDFGNRTADAHNGADQSMALD
                     LLASLQDGASFPVTPFDSLEAGLTVMAIDEAMESGEVLDCRPMWARYDAARYVAGGTS
                     ASPRSS"
     gene            complement(3147..3905)
                     /locus_tag="VHN39_01005"
     CDS             complement(3147..3905)
                     /locus_tag="VHN39_01005"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEX2814941.1"
                     /translation="MATILAVHAHPDDIEHLAAGALALLAAKGHAIRIATLTAGECGS
                     TDTDLNETARIRKDEAARSASLIGAEYHCADLADLGVFNDDRSRRAATELIRWARPDL
                     VITASPADYHPDHEATSELVRDACFASSVPNYRTGPSAALEAIPHLYFMDPIGGRDRE
                     GARVLADFGVDIAGGFAMKQQMLSAHVSQADWVARQHGIADHLASMEAWSRRRGRDFG
                     VPFGEGFRQYRHEPYPKTPLLQELLGEALVPPAT"
BASE COUNT          653 a         1423 c         1455 g          607 t
ORIGIN      
        1 ggtctgcgcg tccagccagt cgacgaagta ctgggccggc gcgatcggcg ccgccgaccg
       61 ggacaaggcg ctggccgcca agcccaaggt ctggaaggac gcaccgaccg cgccggccca
      121 gtacttcgtc gactggctgg acgcgcagac ccgcgccgcg gtcgggacgc cgagacagga
      181 tctgatcgtc gacacgaccc tcgacctgcc cagcgagatc gccgccggcg atgcggcccg
      241 gacggtctcc agccgcttcg ccaagcaggg ggtcagccag gccgcggtgg tctcgctgga
      301 cgggttcggc cgggtgcggg tgctggtcgg cggcgtggac tacgccaagg gccccttcaa
      361 ccgcgccatc gacgcccacc gccaggccgg ctcggcctgg aagcccttcg tctacctgac
      421 cgccatggag gcgggccgaa cccccgacat gatggtggtc gacgagcccg tcaccatcaa
      481 cggctggtcg ccgcgcaatt ttgaacctga attcatgggt tcgatcacca tggaacaggc
      541 cctcgcccac tccatcaaca ccgtcgccgc gcgcctggcc gacgaagtgg gccgcgagaa
      601 cgtggccgcc gtcgcccacc gcctgggcat cgtcagccag atcaacaccg acccggccat
      661 ggcgctcggc accacgctgg tcacgccgct ggagatggcc caggcctatg acgcgttcgg
      721 caacggcggc taccgggtgg cggcctatgg catcgagcgg atccgcacca acggcggcca
      781 ggtgctgttc cagcacaagg cgccgcccta tgcgcaggcc gtgctcaacc cgccactcga
      841 cgagatgcag cggatgatgc gcacggtgat ggcgtccggc accggcacgc acgcggcgat
      901 tcccggctac gacctggccg gcaagacggg caccacctcg gactacaagg acgcctggtt
      961 ctgcggctac accggcggcc tcgtgaccgt ggtctggacc ggccgcgacg acgccacacc
     1021 gatgcggcgg atcaccggcg ccatggcgcc gtcggagatc tggcgcagct acatggtcac
     1081 cgcgctgaag catctgaaca acggcccgat cccgcccggg ccgccgccgc ccctgccggc
     1141 cacgccgacg ccggtggtgg cgcctgcgcc ctccgacacg ccgccgcaag ccacgccgac
     1201 tccggcggcc gcgcgaccgt gaaatcagtt gtagttgacg gtgaccgcca gcgcgccggt
     1261 gtaggcctgg gcgggcgtcg cggcgtcgag gtcgaaggcc ccgccgaagc gcagttcctg
     1321 catgcccgac gccgggatca cgcccagcga cccgttgccg gcgaccggca gggagaccga
     1381 gacgcgggtc aggccgggct gggcgaagct caggctctgg gtcgtcgaat aggtgatgcc
     1441 ggcctcgccg atcaggctga acttggccgg gctgaccgag ccggcggcgc gcgcgccgtc
     1501 gcccgcgcca ctcaaggtca cgctgctgtt cgtgggatcg agcgtgatgg tgttggcgcc
     1561 gctgttcccc ggcttggtca ccgcgccgaa ctcgaggccc tgggtggcct ggagcgtcac
     1621 gggcgccagg atcgtcacgc tgacgctcgc cgtggcgctc accgtgccgg ccgacgccgc
     1681 ggaggcggac agagtcatgg cggcggccgt cagggccagc aaaagagcgt tctgcgcttt
     1741 catgccccga acctagccgg aatgtcttta gaagcagttt ccggagacag taacgcgatt
     1801 gttctatttc gatacaacta cgtatacaca tccttactca agcgttgtcg cggccgagca
     1861 aagtgaacga caagttgatc ggcgtagtta agctccgatt accggccgac gaccttccgg
     1921 ctcggcgcag gcatggccgg tcacccggga acgtgctgag gtgactgctc ctgcggcgga
     1981 tggcgagcgg cgatgaagac ctatcggatc ggcgtgatcg gcctgggcca gcggatcgcc
     2041 catgtgctgg cggcgatgaa ggaggtgggc tggaatctcc atgtcgccgg tcaggtcgac
     2101 cccgcgccgg ttggcgcctc gatcctggcg gccgccggga tcgctgaagg tcgcgtgttc
     2161 gagactcccg ccgatctgct ggcgcgcggc cctttcgacc tggtgatgat cggaacaccc
     2221 aaccacctgc acttcgagca catcagcctg gcgctggatg cgggctaccc ggtgttcgcg
     2281 gagaagccga tcgtgcgcac ccaggccgag agcctggcgc tggcgagccg gctcgccgcc
     2341 ggcggcacgc cgccgctcta tatcggcctc gtcatgcgct ccatgccgat cgtgcgcgag
     2401 gtgctggccc gcgtggacgg gggcgaactc ggcgagatca tctcgatcga cgccacggag
     2461 cacctgccgc ccgagcacgg cggctacctg gcgcggaact ggcggcgcaa ggccgcctgg
     2521 ggcgggtcct acttcctcga caaggtctgc cacgatttcg atatcttcgg gcggatcgcc
     2581 ggcgcccggc ccgccaaggt cgccagcttc ggcggccggc gaatcttcac cgccgagcga
     2641 tcggagagcg caccgcgcaa atgggatgat ggcgaggcgg cctacgtcct gcacgacgcc
     2701 ggctggcagg gggccaacga cgccttccag tcggacatgg acgtcaccga ccaccagacc
     2761 gcgatgatcg aatacgagaa ccagatccgc ctgtcattcc acgccaacag ccatgtgggc
     2821 ctgaccgagc gccgctggta tgtggcgggg accgagggga ccttgatcgc cgacctggtc
     2881 agaaaccgcc tgatggtccg ccgcgcgctc tcccgccaga agcccgaacg catcgacttc
     2941 ggcaaccgca ccgccgacgc ccacaacggc gccgaccagt ccatggccct cgacctgctg
     3001 gcgagcctcc aggacggcgc gagcttcccc gtcacgccct tcgacagcct cgaggccggg
     3061 ctgacagtga tggcgatcga tgaggccatg gagtcgggcg aggtgctgga ctgccggccg
     3121 atgtgggcgc gctacgacgc cgcccgctat gtagccgggg ggaccagcgc ctcgccgaga
     3181 agctcctgaa gcagcggcgt ctttggatag ggctcatgcc ggtactggcg aaagccctcg
     3241 ccgaacggaa ctccgaagtc gcggccgcgg cggcgcgacc aggcttccat ggaggccagg
     3301 tggtcggcga tgccgtgctg gcgcgcgacc cagtcggcct ggctgacgtg ggccgacagc
     3361 atctgctgct tcatggcaaa accgccggcg atatcgactc cgaagtcggc gaggaccctg
     3421 gcgccctcgc ggtcgcggcc gccgatgggg tccatgaaat agagatgcgg gatcgcctcc
     3481 agcgccgcgg aagggcctgt gcggtagttg gggaccgacg aggcgaaaca ggcgtcgcgc
     3541 accagttcgc tggtcgcctc atggtcgggg tggtagtcgg ccggcgaggc ggtgataacc
     3601 aggtcgggcc gcgcccaacg gatcagctcg gtcgccgcgc gccgcgagcg gtcgtcgttg
     3661 aaaactccca gatcggccag gtcggcgcag tggtattcgg cgccgatgag ggacgccgac
     3721 cgcgccgctt catccttgcg gatgcgggcc gtctcgttga ggtcggtgtc ggtcgagccg
     3781 cactcgcccg cggtcagggt ggcgatgcgg attgcgtggc ccttggcggc cagcaaggcg
     3841 agcgcgccgg ccgccaggtg ctcgatgtcg tcgggatggg cgtggaccgc caggatggtc
     3901 gccatgccgc gaggctaggc caggcgcggg acgaacgcca ccggccccgc ccgatacgcg
     3961 gaagggccgg tggacactgg ccgtcttagt tgtaggtgac cgtcaccgac agcgcgccgg
     4021 tatagttctg cggggtggtc gccgcgttca tgtcgaactg gccgccgtac ttgatctcct
     4081 gggtgccggc gccgggaatg gttcccagcg tgcctgtact ggcgatcggc gcgctggc
//
LOCUS       DATAJL010000056         4965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13831,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000056 DATAJL010000000
VERSION     DATAJL010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4965
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13831"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..551
                     /locus_tag="VHN39_01010"
     CDS             <1..551
                     /locus_tag="VHN39_01010"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF025024.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEX2814942.1"
                     /translation="CGWIIERVRGGMARAKVYDAADGSLIERPERDNSVFEFWMAHLD
                     VVILLVRAKIAAATGAAVGQLELCQILHYAPGETFSPHYDFIDTETPGHAMELERGGQ
                     RVATFLIYLNDGYEGGVTTFPVLGFGYRGETGDALTFSNVDAAGEPDRRTLHAGQPPT
                     TGEKWLLSQWIRDRAGQTPYAT"
     gene            684..2330
                     /locus_tag="VHN39_01015"
     CDS             684..2330
                     /locus_tag="VHN39_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase"
                     /protein_id="HEX2814943.1"
                     /translation="MHGLMQDWPLTVDKILDHAANWHGDREIVSRSVEGPIVRTTYGE
                     VHGRAKQLSNALKSLGIEPGDRCATLAWNTARHIEAWYGIMGIGSVCHTLNPRLFPEQ
                     LCYIINHAEDRVIFTDLTFLPILLEHRAKMPTVKHVVVLTDEAHMDPAAFPGALCYET
                     LIGGQSADCVWGDFDENTAAALCYTSGTTGNPKGVLYSHRSNFIHTLVTMGKDVMGIS
                     AVDTVLPVVPMFHANAWGLAFSCSAVGAKLVMPGMKLDGQSVYELLESEEVTFSAAVP
                     TVWQMLLTHMRENKLGLSSLKRVVIGGSAVPEALVRAFRDDYGVSVTHAWGMTETSPL
                     GTLATPTGKIAKMSPEEQLRFTLKQGRPPVGIELKLVDDAGNRLPNDGTTFGRLMVRG
                     AFVVGEYFKGDGGEILDEEGYFDTGDVATIDGHGFMQITDRAKDVIKSGGEWISTIEI
                     ENIAVGHEKAFLCAVIGAAHPKWDERPVLLVKLMPGAESSKEEFLAFLEGKIAKWWTP
                     DDVVFVDDIPLGATGKIDKKLIRERMKGYVLPTAKAKETA"
     gene            2515..4761
                     /locus_tag="VHN39_01020"
     CDS             2515..4761
                     /locus_tag="VHN39_01020"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2814944.1"
                     /translation="MSEQSHDDVIQDFTPYQMTLMAMVFPWQAHAVFNVVGAVALALV
                     GAPLAALVWGVSLCVVDWSSQRLYGRWLQSAGGMDSAKGLGRLSGVILLRMTLWFAPP
                     LAYTVLAHSQTGFALLAVTAISVTALGVSLGWTSWRIFAAMAGPAALAVAIATVSLFG
                     LGPAAGVLVGMVSLIATLALLAMGTHKTVSGWSSANKRAIAVMAGMKAALERSEAAER
                     RLRIAIGLADLHVYEMDYVRGTLMSMGAEHDFFEEPLTFQRLVDDPYCAVAPEHLAAA
                     EAGWAEHEAGGGLYRAEYRVKRTDGREVWASSSAELIRDEDGKPLTLVGAIQNVTERK
                     RGEIELTEALSRAEAGSRAKSEFLTTMSHEIRTPLNGVLGMAQAMARDRLSPAQRKRV
                     DVIRKSGQSLLILLNSVLDLSKIEAGKLELEIGEVDIASLAQAALDMFEGEGADKNLT
                     LALQIAPEAEGVYSGDSQRVSQVLYNLISNAVKFTHQGAITVGIARRDDILQIEVADT
                     GIGISAEQIARLFEKFSQADASVTRRFGGTGLGLAICRQLAAKMGGEVSVQSEEGRGS
                     TFKVSLPLPRLRAGEVADKAGVAPQEIAAEAETDATPPLRVLAAEDNPINQLVLRTLL
                     EQVGVETVMVTDGEQALSAWRDQDWDLILMDIQMPVMDGVTASRAIRAEEAANGRART
                     PIIALTANVMSEQVATYRAAGMDQVVAKPIEIARLLGAMQMAMDASPAEASPDANAAA
                     QSGVIAAA"
BASE COUNT          853 a         1616 c         1720 g          776 t
ORIGIN      
        1 tgtgcggttg gatcatcgaa cgggtccgcg gcggcatggc ccgggccaag gtctacgacg
       61 cggccgacgg ctcgctgatc gagcggccag agcgcgacaa cagcgtcttt gagttctgga
      121 tggcgcatct cgacgtggtg atcctgctgg tcagggccaa gatcgccgcg gcgacgggcg
      181 cggcggtcgg ccagctcgaa ctctgccaga tcctgcacta cgcgccgggc gagacgttca
      241 gcccgcacta cgacttcatc gacaccgaga cgcccggaca cgccatggag ctcgagcgcg
      301 gcggccagcg ggtcgcgacc tttctgatct atctgaacga cggctacgag ggcggcgtca
      361 cgaccttccc ggtgctggga tttggctacc ggggcgagac cggcgatgcg ctgacgtttt
      421 ccaatgtgga tgcggccgga gagccggacc ggcgcaccct gcacgctggc cagccgccca
      481 cgacgggaga gaagtggctg ctctcacagt ggattcgcga tcgggccggg cagacgccct
      541 acgccacctg accggccacg catctgaccg ctcatcgggg gcgcctccaa tcggcgctca
      601 cgttgcgtat gaccgctgat aacaatagcc tgccggaaag cctgacaggg gctagaaggc
      661 gttctcgagt ggaggatttt cgcatgcatg gtctgatgca ggactggccg ctgacggtgg
      721 acaagatcct cgaccacgcc gccaactggc acggcgaccg cgagatcgtc agccgctcgg
      781 tggaaggccc gatcgtgcgc accacctatg gcgaggtcca cggccgcgcc aagcagctgt
      841 ccaacgccct gaagagcctg gggatcgagc caggcgaccg ctgcgcgacg ctggcctgga
      901 acaccgcccg gcatatcgag gcctggtacg gcatcatggg gatcggctcg gtctgccaca
      961 ccctgaaccc gcggctgttc cccgagcagc tctgctacat catcaatcac gccgaagacc
     1021 gggtgatctt caccgacctg accttcctgc cgatcctttt ggaacaccgc gccaagatgc
     1081 ccacggtgaa gcacgtcgtg gtgctgaccg acgaggcgca catggacccc gccgccttcc
     1141 cgggcgcgct ctgctacgag accctgatcg gcggccagtc ggccgactgc gtctggggcg
     1201 acttcgacga gaataccgcc gcggcgcttt gctacacctc gggcacgacg ggcaatccca
     1261 agggcgtgct ctattcgcac cgctcgaact tcatccacac gctggtgacc atgggcaagg
     1321 acgtgatggg gatctcggcg gtcgacacgg tgctgccggt ggtgccgatg ttccacgcca
     1381 acgcctgggg cctggccttc tcctgctcgg cggtgggcgc gaagctggtg atgccgggga
     1441 tgaagctgga cggccagtcg gtctatgaac tcctggagag tgaagaggtg accttctccg
     1501 ccgcggtgcc gaccgtctgg cagatgctgc tcactcacat gcgggagaac aagctcgggc
     1561 tctcgagcct gaagcgggtg gtgatcggcg gctcggcggt gcccgaggcc ctggtccgcg
     1621 ccttccgcga cgactacggc gtcagcgtca cccacgcctg gggcatgacc gagacctcgc
     1681 ccctgggcac gctggcgacg cccaccggca agatcgccaa aatgagcccg gaagagcagc
     1741 tgcgcttcac cctgaagcag ggccgcccgc cggtgggcat cgagctgaag ctggtggacg
     1801 acgccgggaa ccgcctgccg aatgacggga ccacctttgg ccggctgatg gtgcgcggag
     1861 ccttcgtggt cggtgagtat ttcaagggcg acggcggcga gatcctcgac gaggagggct
     1921 atttcgacac cggcgacgtg gccaccatcg acggccacgg cttcatgcag atcaccgacc
     1981 gggccaagga cgtgatcaag tccggcggcg agtggatctc gaccatcgaa atcgagaaca
     2041 tcgccgtggg ccacgagaag gcgttcctct gcgcggtgat cggcgcggcc catcccaagt
     2101 gggacgagcg gccggtgctg ctggtcaagc tgatgcccgg cgcggagtcc tcgaaggagg
     2161 aattcctggc cttcctggaa ggcaagatcg ccaagtggtg gacgcccgac gacgtggtct
     2221 tcgtcgacga catcccgctg ggcgcgaccg gcaagatcga caagaagctg attcgcgagc
     2281 ggatgaaggg ctacgtcctg cccaccgcga aagccaagga aacagcctag ccggcccagg
     2341 cgctgaaccc caagccgcgg ctagccagcg cctcgtggcg cgcctgcggc ggactgccac
     2401 acctcctgcg ccgttgcgcc gaccttaacg gtcgaacgcg aatggtggag cgcgaattca
     2461 tccgcgtacg aacgggccgc gctagacgag ctcggggggc aggggcgtca cttggtgtct
     2521 gaacagtcgc atgacgacgt cattcaggac ttcaccccct atcagatgac gctgatggcc
     2581 atggtgttcc catggcaagc gcatgccgtc ttcaatgtcg tcggggcggt tgccctggcc
     2641 ctggtcggcg cgccgctcgc ggccctggtg tggggcgtga gtctttgcgt cgtcgattgg
     2701 tccagccaaa gactgtacgg gcgctggttg caatccgcgg gagggatgga ctccgccaag
     2761 ggcctcggcc gactgagcgg ggtcattctt ctgaggatga ccctgtggtt tgcgccgccc
     2821 ctggcctaca cggtcctggc tcacagtcag acgggcttcg cgctgctcgc ggtgaccgcg
     2881 atttcggtga ccgcgctcgg cgtatccctg ggttggacct cctggcgaat cttcgccgcg
     2941 atggccggtc cggcggctct ggccgtcgcc atcgccaccg tctccctctt tgggctcggg
     3001 ccggcggcgg gcgtgctggt gggcatggtg agcctgattg cgaccctggc cctgctcgcc
     3061 atgggcacgc acaagacagt gtccggctgg agcagcgcga acaagcgcgc catagcggtc
     3121 atggcgggca tgaaggcggc gctggagcgc tccgaggccg ccgagcggcg gctcaggatc
     3181 gcgatcgggc tcgccgatct gcacgtctac gaaatggact atgtacgcgg cacgctgatg
     3241 agcatgggcg ccgagcacga cttcttcgaa gagcccctga ccttccagcg tctcgtggat
     3301 gacccctatt gcgccgtggc gccggagcac ctggcggccg ccgaggccgg atgggccgag
     3361 catgaggcgg gtggagggct gtatcgcgcg gagtaccggg tcaagcgcac ggatggccgc
     3421 gaggtctggg cctcgtcatc tgcggagctg atccgcgacg aggacggcaa gccgctgacc
     3481 ctggtgggcg cgatccagaa cgtcaccgag cgcaagcgcg gcgagatcga actcaccgag
     3541 gccctttccc gcgcggaggc gggcagccgg gccaagagcg aattcctgac caccatgagc
     3601 cacgaaatcc gcacgcccct gaacggcgtc ctgggcatgg cgcaggcgat ggcgcgcgac
     3661 aggctcagcc ccgcgcagcg caagcgcgtc gacgtgatcc gcaagtccgg ccagtcgctc
     3721 ctgatcctgc tgaacagtgt gctcgacctg tcgaagatcg aggccggcaa gctcgaactt
     3781 gagatcgggg aggtggacat cgcgagcctg gcccaggccg cgctcgacat gttcgagggc
     3841 gaaggcgcgg acaagaacct gacgctcgcc ctgcaaatcg cgccggaggc cgagggggtc
     3901 tattccggcg actcgcaacg cgtcagccag gtgctctaca acctgatctc caacgccgtt
     3961 aaattcaccc atcaaggcgc gatcaccgtc gggatcgccc ggcgcgatga catcctgcag
     4021 attgaggtcg ccgacaccgg catcggaatc tccgccgagc agatcgcacg gttgttcgag
     4081 aagttcagcc aggcggacgc ctcggtgacg cgccgctttg gcggcacggg cctgggcctg
     4141 gctatctgcc ggcagctcgc cgcgaagatg ggcggggagg tgtctgttca aagcgaggag
     4201 ggccgcgggt cgaccttcaa ggtcagcctg ccgctgccaa ggttgcgggc gggcgaggtc
     4261 gcggacaagg cgggcgtcgc gcctcaggaa atcgcggccg aggcggaaac agacgccacg
     4321 ccgcctctcc gggtgctcgc cgccgaggac aatccgatca accagctggt gcttcgcacc
     4381 ctcctggagc aggtcggcgt cgaaacggtg atggtgacgg acggcgagca ggcgcttagc
     4441 gcctggcgag accaggactg ggatctgatc ctgatggata tccagatgcc ggtgatggac
     4501 ggcgtgacgg cgtcgcgggc gatccgcgcc gaggaggcgg cgaacggccg ggcgcgcacg
     4561 cccatcatcg ccctgaccgc caacgtgatg agcgagcagg tcgccaccta tcgagccgcc
     4621 ggcatggatc aggtggtggc caagccgatc gagatcgccc gcttgctggg ggccatgcag
     4681 atggcgatgg acgcatcgcc cgccgaggcc agccccgacg ccaacgccgc cgcccaatcg
     4741 ggcgtcatcg ccgccgcttg aggcgagcgg accggttgac atcgcgtccg cgtcggggcc
     4801 ttgcggtcga atgatcgaac tgcagccggc ctcggaggcc gaccttcccg atatcgcggc
     4861 gctgaccaac tgggcctatc gcgggaccgg accgcagtcg agctggacgg tcgagagcta
     4921 tctcgaaggc gatcagggtg tcgcggacgt tgatcacggt cagcc
//
LOCUS       DATAJL010000057         3449 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_991,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000057 DATAJL010000000
VERSION     DATAJL010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3449)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3449)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3449
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_991"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..713)
                     /locus_tag="VHN39_01025"
     CDS             complement(<1..713)
                     /locus_tag="VHN39_01025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007675741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX2814945.1"
                     /translation="MSLRDFGLLTLVCLVWASNNIVSKYVVSHLGSPPLFYAAARFAV
                     VAIATLPWLLPMPRPRLRLIAVALLMGGGNFALIFMGLKYATPSSVAVVSQLGVPITT
                     LLSVIMLGEAIHWRRALGIALTFAGVVVVMWSSSGLSASVGLVYVIASAIAASFGAVM
                     MKQIEGVKPLQFQAWVGFASVWPLALLSIGFEPGALHAGIAAGWPFLAAVLYSGLVVS
                     VGAHTGYYFLIGRYEANLIS"
     gene            complement(745..1392)
                     /locus_tag="VHN39_01030"
     CDS             complement(745..1392)
                     /locus_tag="VHN39_01030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3052 domain-containing protein"
                     /protein_id="HEX2814946.1"
                     /translation="MSGEKTWEKKPRSRRSSPTVLTKAGCSTSRRSWSSRGRERRTYD
                     ADALAGVAAQGPDLVLADGSRFTLGEKQALAWVDAILNPKGRMDKIGVKPGMRAAIMG
                     VKDPTLSGELTAKGAIPVTELSNLDLLFYAADSAQDLARIDALVPMLSEKGALWIVSH
                     KGNAATVKDTEVMTAAKARGLVDNKVVAFSPTLTSLRFVRRKAEAPAAVETQPEA"
     gene            complement(1438..2580)
                     /locus_tag="VHN39_01035"
     CDS             complement(1438..2580)
                     /locus_tag="VHN39_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2814947.1"
                     /translation="MDFSFTEEQSMLRDTVASYLADHYSFDQRRAILGQEPGWSPAIW
                     KAFAEELGILGAPFSEELGGLGGGPVENMIVMQEMGRALVVEPYLGTVVIGGGFLKHS
                     GHAGAEALIAQIIAGEAIFAFAYAEPQGRYNLADLKTTATKDGAGWVLNGHKAVVIGG
                     PYATHLIVTARTGGGQRDAQGVSVFIVETSAPGVTRRDYPTVDGFRASEITFENVKLG
                     AEALVGPEGHGLPLVEKVVDEALAATCAEACGVLGKLHEGTLEYTRQRKQFGQPISAF
                     QVLQHRMVDMFIQVEQAVSMTYMATIKLGDDKARTKSAAAAKVQIGKACRFVGQNAIQ
                     LHGGMGMTDEMAIGHYFKRATMIESAFGSTDHHLARYEFLSLGQPA"
     gene            complement(2630..>3449)
                     /locus_tag="VHN39_01040"
     CDS             complement(2630..>3449)
                     /locus_tag="VHN39_01040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2814948.1"
                     /translation="SEPGAGSDLASLKCKAEKVTADDGREYYIVNGQKTWTTLGQFAD
                     WGFFLVRTDPDAKPQAGISFLLIDMKSQGISVRPIVTLEGGHEVNDVFLDNVKVPVEN
                     RIFHENQGWTCAKALLAHERSGIAGVARSKRNLEKLRAIATTERSDAGGTLLSDAFFR
                     RKVAELEIDLTALEFTELRTLAGESSGKGPGPESSILKIKGTEIQQRLQELALEAVGH
                     YGAPFLRDLGHNAQIGPDYASGLAGEMFNGRKTSIYGGSNEIQRNIIAKMVLGL"
BASE COUNT          545 a         1172 c         1162 g          570 t
ORIGIN      
        1 gagatcaggt tggcctcata gcggccgatc aggaagtagt agccggtgtg cgcgcccacc
       61 gagaccacca ggccggaata gagcaccgcc gccaggaacg gccagccggc ggcgatcccg
      121 gcgtgcaggg cgcccggctc gaacccgatc gacagcaggg ccagcggcca gaccgaggcg
      181 aagcccaccc aggcctggaa ctgcagcggc ttcacgccct cgatctgttt catcatcacc
      241 gcgccgaacg aggcggcgat ggccgaggcg atcacgtaga ccaggcccac cgaggcgctg
      301 agaccgctgg atgaccacat caccaccacg acgcccgcga aggtcagcgc gatgcccagc
      361 gcgcgacgcc agtggatcgc ctcgcccagc atgatcaccg acaacagcgt ggtgatcggc
      421 acgccaagct ggctgaccac cgccaccgac gacggggtcg catacttcag ccccatgaag
      481 atcagcgcga aattgccgcc gcccatcaat agcgccacgg cgatcagccg caggcggggc
      541 cttggcatcg gcaacagcca cggcagggtc gcgatcgcca ccaccgcgaa ccgcgccgcc
      601 gcatagaaca gcggcggcga gcccaggtgg ctcaccacat atttcgagac gatgttgttg
      661 gacgcccaga ccaggcagac gagggtgagc agcccgaaat cgcgcaggga catgggttcc
      721 gcttactgcg cgtcgggctc gcggtcacgc ctcgggttgg gtctcgaccg ccgccggagc
      781 ctcggccttg cgccgcacga agcgcagcga ggtcagcgtg ggcgaaaacg ccaccacctt
      841 gttgtccacc aggccgcggg ccttggcggc ggtcatgacc tcagtgtcct tgacggtggc
      901 ggcgttgccc ttgtgcgaga cgatccacag cgcgcccttc tcggagagca tggggaccaa
      961 ggcatcgatg cgcgccaggt cctgggcgct gtctgccgca tagaagagca gatcgaggtt
     1021 cgagagttcg gtcaccggga tggcgccctt ggcggtgagt tcgccgctga gcgtcgggtc
     1081 cttcacgccc atgatggcgg cccgcatgcc gggcttcacg ccgatcttgt ccatccggcc
     1141 cttgggattg aggatggcgt cgacccaggc cagcgcctgc ttctctccga gcgtgaagcg
     1201 cgaaccgtcg gccagcacca ggtcggggcc ctgggctgcg acgccggcca gggcgtcggc
     1261 gtcataggtg cggcgctcgc ggccccttga agaccagctt cggcggctcg tactgcagcc
     1321 ggccttcgtc aggaccgtcg gcgaactgcg cctggaccgt ggcttctttt cccaagtctt
     1381 ctctccgctc atcccaccgg ccgaggggcc gatccggatg accgcaggcc tatagcacta
     1441 agccggctgt cccaggctca ggaactcgta gcgggccagg tggtggtcgg tggagccgaa
     1501 ggcgctctcg atcatggtgg cgcgtttgaa gtagtggccg atggccattt cgtcggtcat
     1561 gcccatgccg ccgtgcagct ggatggcgtt ctggccgacg aacctgcagg ccttgccgat
     1621 ctgcaccttg gcggcggcgg ccgatttggt ccgcgccttg tcgtcgccga gcttgatggt
     1681 ggccatgtag gtcatcgaga ccgcctgctc gacctggatg aacatatcga ccatgcggtg
     1741 ctgcagcacc tggaaggccg agatcggctg gccgaactgc ttgcgctggc gagtgtattc
     1801 cagcgtgccc tcgtgcagct ttccgagcac cccgcaagcc tcggcgcagg tggcggccag
     1861 cgcctcgtcc accacctttt ccacgagcgg caggccgtgg ccctcggggc cgaccagggc
     1921 ctcggcgccc agcttgacgt tctcgaaggt gatctcggag gcccggaacc cgtcgacggt
     1981 ggggtagtcg cgccgggtga cgccgggcgc ggaggtctcc acgatgaaga cgctgacccc
     2041 ctgggcgtcg cgctggccgc cgccggtccg cgcggtgacg atcaggtggg ttgcgtaggg
     2101 cccgccgatc accacggcct tgtggccgtt cagcacccag ccggcgccgt ccttcgtcgc
     2161 ggtggtcttc aggtcggcca gattgtagcg gccctgcggc tcagcgtagg cgaaggcgaa
     2221 gatcgcctcg cccgcgatga tctgggcgat cagggcctcg gcgcccgcat ggcccgagtg
     2281 cttcaggaaa ccgccgccga tcaccaccgt gcccaggtag ggctcgacga ccagcgccct
     2341 tcccatctcc tgcatgacga tcatgttctc gaccggcccg ccgcccaggc cgccgagttc
     2401 ctcggaaaac ggcgcgccca atatgcccag ctcttcggcg aaggccttcc agatggccgg
     2461 gctccagccc ggctcctggc ccaggatcgc gcggcgctgg tcgaacgaat aatggtccgc
     2521 cagatagctc gcgaccgtgt cgcgcagcat tgactgttct tcggtgaagg agaaatccat
     2581 cggtcgggca ggtccgtgag aacgttggcg ggaaaggtta ggcggagccc tagagcccca
     2641 gcaccatctt ggcgatgatg ttgcgctgga tctcgttgga gccgccgtag atcgaggtct
     2701 tgcggccgtt gaacatctcc ccggccaggc cagaggcgta gtccgggccg atctgggcgt
     2761 tgtggccgag gtcgcgcagg aagggggcgc catagtggcc gaccgcctcc agggcgagct
     2821 cctgcagccg ctgctggatc tcggtgccct tgatcttcag gatcgagctt tccgggcccg
     2881 gccccttgcc gctcgactcg ccggccagcg tcctgagttc ggtgaactcc agcgccgtca
     2941 ggtcgatctc cagctccgcc accttgcggc ggaagaaagc gtcggagagc agggtcccgc
     3001 cggcgtccga ccgctcggtg gtggcgatcg cgcgcagctt ttcgaggttg cgcttggagc
     3061 gcgcgacgcc cgcgatcccc gaccgctcgt gggccagcag cgccttggcg caggtccagc
     3121 cctggttctc gtggaagatg cggttttcca ccggcacctt cacattatcc aggaacacgt
     3181 cgttgacctc gtggcccccc tccagcgtca cgatcggccg gacgctgatg ccctggctct
     3241 tcatgtcgat cagcaggaag gagatgccgg cctgcggctt ggcgtcgggg tcggtgcgga
     3301 ccaggaagaa gccccagtcg gcgaactggc ccagcgtcgt ccacgtcttc tggccgttga
     3361 cgatgtagta ctcgcggccg tcgtcggcag tgaccttctc ggccttgcac ttgaggctcg
     3421 ccaagtccga gcccgcgccg ggttcggag
//
LOCUS       DATAJL010000058         4419 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26739,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000058 DATAJL010000000
VERSION     DATAJL010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4419
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26739"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..2667)
                     /locus_tag="VHN39_01045"
     CDS             complement(13..2667)
                     /locus_tag="VHN39_01045"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF023266.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HEX2814949.1"
                     /translation="MKIAIAVAAALLAASSAAWAAPTPHKLTGEAAFPPHVALPTNVR
                     PERYDVTIVTHAANLTFAGQEWIELTVKASTDRIVLNAADISFQRANLILGALHEPHP
                     HVVMSFTPRIKLDQEQQTAAFVFAKPLAPGRYTLNLDYTGKIYQQASGLFALDYTGDH
                     GKQRALFTQFENSDARRFIPSWDEPGVKSIFSLTVEAPAEQMAVSNMPVTRTVARSDG
                     RQTIFFADTPKMSSYLLFFALGDFERIHKQVGPTDVGVVVRRGDTARAQFALDAAAEL
                     LPFYNDYFGTPYPLPKLDFIAGPGRSQFFSAMENWGAIYYFDYALLVDPKLSTEGDKQ
                     NIYVDIAHEMAHQWFGDLVTMAWWDDLWLNEGFASWMENKATDHFHPEWKIWLQTKAG
                     EQGAMRIDARAGTHPVITPIHDVFAASNAFDDITYEKGHSVIHMLETYVGEDVFRQGV
                     RNYIAHHAYGNTVTDDLWTEIDKVSPKKITGIAHDFTLQAGVPLISISRSKAGVRLTQ
                     TRYGIDAASKAPTAWRTPVTITGLGAPWRTVVSGKTPVSKAAAAGATPLVNAGQTGYF
                     RTRYSPELSERIAASFATLAPDDQLGLIYDSQALGQAGYAPMGDFLTIARSAQAAQDP
                     VVQQALTQRLSGLNDLYEGLPGKAAYRAFARARLVPAYARVGWDAKPGEPDNDALLRR
                     TVLATLGALDDPAVIAEARRRFTAWLAAPDSLRGTTRQTVLQIVADHADAATWDQLHA
                     LAQRATDPTDKSRFYRYLGVSHDPALADRALALALTREPPATDAPTLISGVSEVYPDK
                     AFTWALAHRAEVDAMVEPTSRTSFFARLAGGSHDPAILPPLKAFALTVPASSRGEITK
                     AIASILYQGVIVSTRLPEVDRWLAAHPG"
     gene            2756..>4419
                     /locus_tag="VHN39_01050"
     CDS             2756..>4419
                     /locus_tag="VHN39_01050"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase dimerization domain-containing
                     protein"
                     /protein_id="HEX2814950.1"
                     /translation="MDHRKNATEATKAAHARLAASLPTDSGEDMANATRGFIGTIPNA
                     EVPGAWSLAPFAFLEDAEPAETVNPSLWRQARLNMQHGLFEVTKGVYQVRGFDLSNIT
                     FIEGETGYVVIDPLISAQPAAAALKLMRKHRGDKPVTGVIYTHSHVDHYGGVRGVISD
                     ADISAGMQIVAPEGFLREAVSENVLAGNAMGRRATYMYGATLPRDAKGHVDAGLGKTV
                     SMGSVSLVPPTISIRETGERLTMDGVEIVFQVTPDTEAPAEMNFFFPQFRALCMAENC
                     TCQLHNLYTPRGAQVRDARAWSHYINEASEMFAADTEVLFASHHWPRWGSGEAARFLR
                     LQRDLYKYIHDQTLRMANHGLNPVEIAEALALPPSLAAEWHTRGYYGTLNHNAKAVYQ
                     RYLGWFDGNPANLHKLPPVEAATRYVEVAGGTEALLAKAREAYGRGEYRWVAELVNHL
                     VFADPTNADARALQADALEQMGYQAESGPWRAFYLTGAQELRSPRPASETPRQGAAGQ
                     LRALPADALLESFSVRLNGEKAGAVGDLALTLSFTDTGERFAVSVE"
BASE COUNT          712 a         1362 c         1641 g          704 t
ORIGIN      
        1 ctcttggggc gcctagccgg gatgggccgc cagccagcgg tcgacctccg gcaggcgcgt
       61 gctgacgata acgccttgat agaggatcga ggcgatcgcc ttggtgatct cgccccggga
      121 tgaggccgga acggtcaggg cgaaggcttt cagcggcggc aggatggccg ggtcgtgcga
      181 accgccggcg agccgggcga agaagctggt gcggctggtg ggctcgacca tggcgtcgac
      241 ttcggcgcgg tgggcgaggg cccaggtgaa cgccttgtcc gggtagacct cggacacgcc
      301 ggagatcagg gtcggcgcgt cggtggccgg cggctctctg gtcagggcga gcgccagcgc
      361 gcggtcggca agcgccgggt catggctgac gccgaggtaa cggtagaagc ggctcttgtc
      421 tgtggggtcg gtggccctct gggcgagcgc atggagctga tcccaggtcg cggcgtcggc
      481 gtggtcggcg acgatctgca ggacggtctg gcgtgtcgtc ccgcgcaggc tgtcgggggc
      541 cgccagccag gcggtgaagc gtcggcgggc ttcggcgatg accgcggggt cgtcgagcgc
      601 gcccagggtg gccagcacgg tgcgccgcag gagcgcgtca ttgtccggct cgccgggctt
      661 ggcgtcccaa cccacgcgcg cataggccgg gaccaggcgg gcgcgggcga aggcgcggta
      721 ggcggccttc ccgggcaggc cctcatagag gtcattcagc ccgctcagcc gctgggtcag
      781 cgcctgctgc accaccgggt cctgggcggc ctgggcgctc ctggcgatgg tcaggaagtc
      841 gcccatcggc gcatagcccg cctggccgag cgcctggctg tcatagatca agccaagctg
      901 atcgtcgggc gcgagcgtcg cgaagctggc agcgatgcgc tcggaaagct cgggggaata
      961 ccgggtgcgg aaatagccag tctggccggc gttcacgagc ggggtcgcgc ccgcggcggc
     1021 ggctttcgag accggggtct tgccgctgac caccgtccgc cagggcgcgc ccagcccggt
     1081 gatggtgacc ggcgtgcgcc aggcagttgg cgccttggag gccgcgtcga tcccgtagcg
     1141 ggtttgggtc agccgcacgc cggccttgct ccgggaaatc gagatcagcg gcacgccggc
     1201 ctgcagggtg aagtcgtggg cgatgccagt gatcttcttg ggcgagacct tgtcgatctc
     1261 ggtccagagg tcgtcggtga ccgtgttgcc gtaggcgtgg tgggcgatgt agttgcgcac
     1321 gccctgacgg aagacatcct cgccgacgta ggtctccagc atgtggatga ccgaatggcc
     1381 cttttcgtag gtgatgtcgt cgaaggcgtt ggaggcggcg aagacgtcgt ggatcggcgt
     1441 gatcactggg tgcgtgccgg cccgggcgtc gatgcgcatg gcgccctgct cgccggcctt
     1501 ggtctgcagc cagatcttcc actccggatg gaagtggtcg gtggccttgt tctccatcca
     1561 ggaggcgaag ccctcgttca gccacaggtc gtcccaccag gccattgtga ccaggtcgcc
     1621 gaaccactgg tgggccatct cgtgggcgat atcgacgtag atgttctgct tgtcgccttc
     1681 ggtggagagc ttggggtcaa ccaggagtgc gtagtcgaaa tagtagatcg cgccccagtt
     1741 ctccatggcg gagaagaact ggctgcggcc agggccggcg atgaaatcga gcttgggcag
     1801 cggatagggc gtgccgaaat agtcgttgta gaaaggcagg agctcggccg ccgcatccag
     1861 cgcgaactgg gccctggcgg tgtcgccgcg gcggaccacc acgcccacgt cggtcgggcc
     1921 gacctgcttg tggatgcgct cgaaatcgcc cagcgcgaag aacagcaggt aagagctcat
     1981 cttcggggta tcggcgaaga aaatggtctg gcggccgtct gatctggcga ccgtcctggt
     2041 caccggcatg ttggagacgg ccatctgttc tgcaggcgcc tcgacggtga gtgagaagat
     2101 cgacttcacg ccgggctcgt cccacgaagg aatgaagcgc cgggcgtcgg agttctcgaa
     2161 ctgtgtgaag agggcgcgct gcttgccgtg gtcgcccgtg tagtctagcg cgaagagacc
     2221 ggaggcttgt tggtagatct tgccggtgta gtcgagattc aaggtgtagc ggccgggtgc
     2281 gagcggcttg gcgaacacga aggccgcagt ctgctgttcc tggtcgagct tgatcctcgg
     2341 cgtgaaggac atgacgacgt gagggtgagg ctcgtgcaac gcgccgagga tcaagttggc
     2401 cctctgaaac gaaatgtcgg ccgcgttgag gacgatgcgg tcggttgaag ccttcaccgt
     2461 aagctcgatc cactcctgtc ctgcgaaggt taggtttgcg gcgtgggtca cgatggtgac
     2521 gtcgtagcgt tcaggccgga cgttggtcgg cagggccacg tgcggcggga acgcggcctc
     2581 gccggtgagc ttgtgaggcg tgggcgcggc ccaggcggcg gagctggccg cgaggagggc
     2641 ggcggcgacg gcgatggcga ttttcatggg cgcgacgtta gtcaggcccg cggcgttgcg
     2701 ctagccgtcg gggccagagc gcatgctaga tgcctatccg aggcgggaga ggctcatgga
     2761 tcaccggaaa aacgcgacgg aggcgacgaa ggcggcccac gcgaggctcg cggccagcct
     2821 gcccaccgac agcggcgagg acatggccaa cgccacgcgc ggcttcatcg gcaccatccc
     2881 gaacgcggag gtcccgggcg cctggagcct ggcccccttc gcctttctgg aggacgccga
     2941 gcctgcggag acggtgaacc ccagcctctg gcgccaagcc cggctcaaca tgcagcacgg
     3001 cctcttcgag gtgaccaagg gcgtctatca ggtgcgcggc ttcgacctct ccaacatcac
     3061 cttcatcgag ggcgagacgg gctatgtcgt catcgacccg ctgatctccg cccagcccgc
     3121 cgccgcggcc ctgaaactga tgcgcaagca ccggggcgac aagccggtga ccggggtgat
     3181 ctacacccac agccacgtgg accattacgg cggcgtccgg ggtgtgatca gcgacgccga
     3241 catcagtgcg ggcatgcaga tcgtggcgcc ggagggcttc ctgcgcgagg cggtgagcga
     3301 gaacgtcctg gccggcaacg ccatgggccg gcgcgcgacc tacatgtacg gcgcgaccct
     3361 accgcgcgac gccaaggggc acgtggacgc ggggttgggc aagaccgtgt cgatgggttc
     3421 ggtcagcctg gtgccgccga ccatcagcat ccgcgagacc ggcgagcggc tgaccatgga
     3481 cggggtggag atcgtcttcc aggtgacgcc ggacaccgag gcgccggccg agatgaactt
     3541 cttcttcccg caattcaggg cgctgtgcat ggcggagaac tgcacctgcc aactgcacaa
     3601 tctctacacg ccgcgcgggg cccaggtgcg cgatgcgcgg gcctggagcc actacatcaa
     3661 cgaggcctcg gagatgttcg cggccgacac cgaggtcttg ttcgcgagcc accattggcc
     3721 gcgctgggga tccggcgagg cggcgcggtt cctgcggctg cagcgcgacc tctataaata
     3781 catccacgac cagacgctga ggatggccaa tcacgggctc aatccggtgg agatcgccga
     3841 ggccctggcg cttccgccca gcctggcggc ggagtggcat acccgcggct actacgggac
     3901 gctgaatcac aacgccaagg cagtctacca gcgctacctc ggctggttcg acggcaatcc
     3961 ggccaacctg cacaagctgc cgccggtgga ggccgcgacc cgctacgtcg aggttgcggg
     4021 cggaacagag gcgctgctcg ccaaggcccg cgaggcctat gggcgaggcg agtatcgctg
     4081 ggtggccgag ctggtgaacc atctggtgtt cgccgacccc acgaacgccg acgcccgcgc
     4141 gctacaggcc gatgcgctgg agcagatggg ttaccaggcc gagagcgggc cgtggcgagc
     4201 cttctacctg accggcgccc aggagctgcg gtctccaagg cccgcgtcgg agacgccacg
     4261 gcagggcgct gctgggcaac tgcgagccct gccggccgac gcgctgctgg aaagcttctc
     4321 ggtgcggctg aatggggaga aggcgggcgc ggtgggcgat ctggcgctca cgctcagctt
     4381 caccgacacc ggcgagcggt tcgcggtcag cgtcgagaa
//
LOCUS       DATAJL010000059         1840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_26766,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000059 DATAJL010000000
VERSION     DATAJL010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1840
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26766"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1254)
                     /locus_tag="VHN39_01055"
     CDS             complement(<1..1254)
                     /locus_tag="VHN39_01055"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF006187.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEX2814951.1"
                     /translation="MTKASDLFIACLEEEGVEYVFGVPGEENLDFLDSLSRSKKIKLI
                     LTRHEQGAGFMAATYGRHTGKAGVCVATLGPGATNFVTAAAYAQLGGMPMMMVTGQKP
                     IKSSKQGRFQILDVVAMMGPLTKYTHQLASADNIPSRIREAFRLGQEEKPGAVHLEFP
                     EDIAHEQTDSTPIPKSNARRPVADEKSIKSAARRIEKARSPILVIGAGANRTMTSRML
                     AQFIEKTGIPFVSTQLGKGVVDETSPKFLGCAALSAGDFVHRAIGAADLIINVGHDVI
                     EKPPFFMQKGGAEVIHINFRSAEVDPVYFPQYEVIGDIGNAIWQIKEDILPQAGWDFS
                     TMMKARAAEVAHTAAQVDDMRFPIYPQYLVAQIRKAMPPNGIICLDNGVYKIWFARNY
                     PARMNNTVLLDNALATMGAGLPSAMA"
     gene            1449..>1840
                     /locus_tag="VHN39_01060"
     CDS             1449..>1840
                     /locus_tag="VHN39_01060"
                     /inference="COORDINATES: protein motif:HMM:NF014827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEX2814952.1"
                     /translation="MAASDHVDLEHFIAGVNKRNPGQPEFVQAVQEVAEDIFGFIADK
                     EQYHEYQILRRIAEPDRVVSFRVCWEDDNGSIRVQRGWRVQNNNAIGPYKGGIRFHPS
                     VTESVLKFLAFEQTFKNALTGLPMGGGKG"
BASE COUNT          307 a          579 c          610 g          344 t
ORIGIN      
        1 cgccatggcc gaggggaggc ccgcgcccat ggtcgccaac gcattgtcca gcagcacggt
       61 gttgttcatc cgggcgggat aattccgcgc gaaccagatc ttatagaccc cgttgtccag
      121 acagatgatg ccgttcggcg gcatggcctt gcggatctgg gcgaccagat actgcggata
      181 gatcgggaag cgcatgtcat cgacctgagc ggcggtgtgg gccacctccg ccgcgcgggc
      241 cttcatcatc gtggagaagt cccatccggc ctggggcagg atgtcttcct tgatctgcca
      301 gatggcgttg ccgatgtcgc caatcacctc gtattgcggg aaatagaccg ggtcgacctc
      361 ggccgagcgg aagttgatgt ggatcacctc tgcgccgccc ttctgcatga agaacggcgg
      421 cttctcgatc acgtcgtggc cgacgttgat gatcaggtcc gccgcgccaa tggcccggtg
      481 cacgaaatcg cccgccgaca gcgccgcgca gcccaggaac tttgggctgg tctcatcgac
      541 cacgcccttg ccgagctggg tcgagacgaa ggggatgccg gtcttctcga tgaactgggc
      601 gagcatccgg ctggtcatgg tgcggttggc gccggccccg atcaccagga ttggcgacct
      661 cgccttttcg atgcgccggg ccgcggactt gatgctcttc tcgtccgcca ccgggcggcg
      721 tgcgttgctc ttggggatcg gggtggagtc ggtctgctcg tgggcgatgt cctcggggaa
      781 ctcgagatgg accgcgccgg gcttttcctc ctggcccagc cggaacgctt cgcggatccg
      841 cgacgggatg ttgtcggccg aggcgagctg gtgggtgtac ttggtcagcg gccccatcat
      901 ggccaccacg tccaggatct ggaaccggcc ctgcttggaa ctcttgatgg gcttctggcc
      961 ggtgaccatc atcatcggca tgccacccag ctgggcatag gccgcggcgg tcacgaagtt
     1021 ggtggcgccg ggccccagcg tcgcgacgca gacaccggcc ttgccggtgt ggcggccgta
     1081 ggtggcggcc atgaagcccg cgccctgttc gtggcgggtc aggatcagct tgatcttctt
     1141 ggagcgcgac aggctgtcga ggaagtcgag gttttcctcg cccgggacgc caaagacgta
     1201 ctccacgcct tcctcttcca gacaggcgat gaagagatcc gatgccttgg tcatttcgct
     1261 acgtccccgc ccgatgcgcg agttgggtcc atttgcgcgg atttgtgaag agggatcggc
     1321 gtccccggag gcaagcgcgg ccttaaacgc ttaagcctgg gtcaaattgc ctgttatgaa
     1381 gggccgggga ttggctttcc gagcgcccga cggcgcgcgg cggccagata aaatctgggg
     1441 acatgcctat ggccgcatct gaccacgtcg atctcgagca cttcatcgcc ggcgtcaaca
     1501 agcgcaaccc tggccagccg gaattcgtcc aggcggtgca ggaagtcgcc gaggacatct
     1561 tcggcttcat cgccgacaag gaacagtacc acgagtacca gatcctgcgc cggatcgccg
     1621 agcccgaccg ggtcgtgagc ttccgggtct gctgggagga cgacaatggc tcgatccgcg
     1681 tccagcgtgg ctggcgcgtc cagaacaaca acgccatcgg cccctacaag ggcggcatcc
     1741 gcttccaccc ctcggtcacc gaaagcgtgc tgaagttcct ggccttcgag cagaccttca
     1801 agaacgcgct caccggcctg ccgatgggcg gcggcaaggg
//
LOCUS       DATAJL010000060         4111 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78054,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000060 DATAJL010000000
VERSION     DATAJL010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4111
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78054"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VHN39_01065"
     CDS             <1..219
                     /locus_tag="VHN39_01065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814953.1"
                     /translation="AKKNDIPWRGVADSLKKLDAADLLGKGTVEIARYLNDIRNRAVH
                     GFDTPTEGEALEFLMRSKSVAQRVTQAR"
     gene            complement(354..845)
                     /locus_tag="VHN39_01070"
     CDS             complement(354..845)
                     /locus_tag="VHN39_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814954.1"
                     /translation="MVELDQKQAPGVGQPLFAAVHVTRQRRGMVDLLCHVCGKPTTRH
                     DRFIFPVASGGLVTLQDGSQQYGCNVPPIHRACTTRALNTCPHLSKLAERPLRCSADE
                     GRLIYRTDVTPGLEALARTLPAGMEVVFTCYRLYGPDFTSRVIAARTEWDQLARSRRN
                     AAP"
     gene            1194..1721
                     /locus_tag="VHN39_01075"
     CDS             1194..1721
                     /locus_tag="VHN39_01075"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX2814955.1"
                     /translation="MKHSATGLTLALAAFVAVAQAPAAWASPASSCTADFSSCDIFEG
                     GSIVSLPGLAISGDVVVLGAGNDVSDVFRIFNDFADTGGGTGLGTTAFLYSDDEGNLP
                     DPSTYSANVVMIHEGPLIAPGLTETDFNGNGTLYRLFSDEPVQGVPEPGAWVVLLVGF
                     VGVGAMARRQRPSQG"
     gene            1755..2300
                     /locus_tag="VHN39_01080"
     CDS             1755..2300
                     /locus_tag="VHN39_01080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814956.1"
                     /translation="MIERMASCACGRVQLKLAGAPILGAACCCSDCQAGGRLIEALPH
                     AAAIRDEFGGTPYLIYRDDRFACMAGADALEGIRLSEAATTTRYVATCCNSGMYLKFG
                     PGWWTSVYRARFPGDAPPIVLRSKVASLPAGVALPRDIPAYRGFPLKLITRLLSARLA
                     MWLGRSAGAGRANSPPGRTPV"
     gene            complement(2297..2905)
                     /locus_tag="VHN39_01085"
     CDS             complement(2297..2905)
                     /locus_tag="VHN39_01085"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2814957.1"
                     /translation="MALALTFGAGIAAANASVFNFDVIYTGGGNAVLAPGSDDMLGVG
                     PVQGDTINYSITASGGQWKTIAPGGPSIFGALGDFLGDFGQVSFDYNYAFNFHGAAQS
                     TGSGSGSQGDADIGPRQIFYASGMNFDNFSETLLVTSATQVLTFVSLLPSWPGNSPEA
                     GSPDTIVFTRSGVPEPAAWALMILGFAGVGASLRRRPSAVAA"
     gene            3150..3722
                     /locus_tag="VHN39_01090"
     CDS             3150..3722
                     /locus_tag="VHN39_01090"
                     /inference="COORDINATES: protein motif:HMM:NF021361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2059 domain-containing protein"
                     /protein_id="HEX2814958.1"
                     /translation="MKRVQVAIVAMAFLAAASTAIAQPAAPAPDPERLQLARAVMQAN
                     GGAEALQNSLKGMFASMAKLTQSIMPATTSPEASAMSNALIRHMQEEELKGASAMIDD
                     LATVYAEHLTVRELQDMLAYAKSPTAQSVRAKMPAISEEVLMRQAPMLRRMTAGAVKT
                     AVELTCEENHCTADQRSTLMAVAAKVAPGS"
     gene            3812..>4111
                     /locus_tag="VHN39_01095"
     CDS             3812..>4111
                     /locus_tag="VHN39_01095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814959.1"
                     /translation="MKQALRVLKALAVGLTLAGLVGARAARAADAAANPAQAWWAGYL
                     ANAQAVKLPDGRSMTLYCEGQGAPVVVLESGLGDGAWSWARVQDQMAARTRVCSYD"
BASE COUNT          676 a         1345 c         1439 g          651 t
ORIGIN      
        1 gcgaagaaaa acgacatccc gtggcgcggc gtcgccgata gcctgaaaaa gctcgacgcg
       61 gctgaccttc tcggaaaagg cacggtcgag atcgcacgct acctgaacga catccgaaat
      121 cgcgccgtgc atggtttcga cacgccgaca gaaggcgaag ctcttgaatt cctgatgcgg
      181 agcaagagcg tggcgcagcg ggttacccag gcgcgatagc tgggccgacg ctgattgggg
      241 cgccgtcagg ttcgtcctta gacccaatgc ccagattcga gcacacgctc cgccatgggc
      301 tcaagggcgg gggcgtttgc ggaccctgag cggtttcgga tcaccgcgga cgttcagggc
      361 gcggcgtttc tccgcgaccg cgccagctgg tcccattccg tccgcgcggc gatcacccgg
      421 ctggtgaaat cagggccgta caggcggtaa caggtgaaga cgacttccat gcccgcgggc
      481 aaggtgcggg ccagagcctc caggcctggc gtgacgtcgg tacggtagat gagccgcccc
      541 tcgtcagcgg agcatctcag gggacgctcg gcgagcttcg acaggtgcgg acaggtgttg
      601 agggctctgg tcgtgcaggc ccgatggatg ggcgggacgt tgcagccgta ctgctgagac
      661 ccgtcctgca gggtcaccag gccgcccgag gcgacgggga agatgaagcg gtcgtgccgc
      721 gtcgtcggct tgccgcacac atggcagagc aggtcgacca tcccgcgtct ctggcgcgtg
      781 acgtgcaccg ccgcaaagag cggctggccg acgccggggg cctgcttctg atcaagctcc
      841 accatgccgg gaaagtcctg cgatggctga agacggaatg actgttccgc gctccacgcc
      901 accgaccatg gagcgtcggg cgtcgacatg cctgcctcat cgaccgaacc gcgtcccagc
      961 agcggcgggc cagcctagct ttgtcggaac cgcttttcac cccattggga cgctcgcgcg
     1021 gcgccgaagc gcacgctccg ccagggggtt tgagggccgg ggggggatcg cgggtcagag
     1081 aaacttccgc ttcccaccgc aagcagactt ctccaatgtt tgagcgcgtg cgccagatct
     1141 gcgccacatc gagagacccg acgtcccgct gtggctaacc gggaggttag attttgaagc
     1201 actcagcgac tggcctgacg ctcgcgctgg cggcgttcgt cgcggttgcg caggcccccg
     1261 cggcctgggc gtccccggcg tcgagctgca ccgccgactt cagctcatgc gacatcttcg
     1321 agggcggatc gatcgtctcg ctgccgggtc tggcgatttc gggcgatgtc gttgtgctgg
     1381 gcgcaggcaa tgacgtcagc gacgtcttcc gcatcttcaa cgacttcgca gataccggcg
     1441 gcggcacagg cctgggaacc acggccttcc tctacagcga cgatgagggc aaccttccgg
     1501 acccctccac ctacagcgcc aacgtcgtca tgatccatga aggcccgctg atcgcgcccg
     1561 gtctcaccga aaccgacttc aacggcaacg gcaccctcta tcgcctgttc agcgatgagc
     1621 ctgtccaggg cgttccggag cctggcgcct gggtggtgtt gcttgtcggc ttcgtgggcg
     1681 tcggggccat ggcgcgtcgc caaaggccaa gccagggcta gggtgccgga ccatccgaca
     1741 cgccgggagg gacgatgatc gagcggatgg cgtcgtgcgc ttgcgggcgc gtgcagctga
     1801 agctggccgg cgcgccgatc ctgggcgcag cctgctgttg ttcggattgc caggccggcg
     1861 ggcggctcat cgaggcgctg ccgcacgccg cggcgatccg cgatgaattc ggcggcacgc
     1921 cctacctgat ctaccgcgac gaccgcttcg cctgcatggc cggggccgac gcgctggagg
     1981 ggatcaggct ttcggaggcc gccacgacca cgcggtatgt cgcgacctgc tgcaattcgg
     2041 gcatgtatct gaagttcggt ccgggctggt ggacatcggt ctatcgcgcc cgtttcccgg
     2101 gcgatgcgcc ccccatcgtg ctgagaagca aggtcgccag cctgccggcc ggcgtcgcgc
     2161 ttcccaggga tattccggcc tatcggggat ttccgctgaa gctgatcacg cgcctgctgt
     2221 cggcgcggct cgcgatgtgg ctgggccgat cggcgggcgc aggccgggcg aactcgccgc
     2281 ccggccgaac cccggtctag gcggcgacgg cgctcggtcg gcggcgcagg ctcgcgccga
     2341 cgccggcgaa gcccaggatc atcaaggccc aggccgcggg ttccggaacg ccgcttcgcg
     2401 taaagacgat ggtgtccggc gacccggcct caggcgagtt tcccggccag gacggcagga
     2461 gcgaaacgaa cgtcagcacc tgggtcgccg aggtcaccag cagggtctcg gagaagttgt
     2521 cgaagttcat tccgctcgca tagaaaatct gacgcgggcc gatgtccgca tcgccctggc
     2581 tacccgaccc cgagccggtc gactgcgcgg cgccatggaa gttgaaggca tagttgtagt
     2641 cgaacgagac ctggccgaag tcgccgagaa aatcgccgag cgcgccaaag atggagggcc
     2701 cgcccggcgc gatggtcttc cactgcccgc cgctcgcggt gatgctgtag ttgatcgtgt
     2761 cgccctgcac cggcccgacg cccagcatgt cgtcgctgcc cggcgcgagc acggcgttgc
     2821 cgccgcccgt gtagatgaca tcgaagttga acacgctggc gttcgcggcc gcgatgccgg
     2881 cgccgaacgt cagagctagc gccaaggacg cgctcgccag aattctggtc ttcagttgca
     2941 ttcgttcgcc ccatcctcga caaccgtcag gtcttcgcaa agcttaaccg aacgtttttt
     3001 tcaagaaaac aatgttcccc caacaggcga gtctcaccct cctcgctcgg ggtctggagc
     3061 cgcgcggcgg cgccgggcga ccggcctggg cggaatggcg ggggcgggta aaagcgccta
     3121 gggtccccgc ggcagacagg gagcggtcca tgaagcgggt gcaggttgcg attgtggcga
     3181 tggccttcct ggccgcggcc tccacggcga tagcccagcc cgcggcgccc gcgcccgatc
     3241 ctgagcgcct gcaactggcc cgggcggtca tgcaggccaa cggcggcgcc gaggccttgc
     3301 agaacagcct gaagggcatg ttcgcctcaa tggccaagct gacgcagagc atcatgccgg
     3361 cgaccacctc gccggaggcc tcggcgatgt cgaacgcgct gataaggcac atgcaggagg
     3421 aagagctgaa gggcgcctcc gccatgatcg atgacctcgc cacggtctat gccgagcacc
     3481 ttacggttcg ggaactgcag gacatgctcg cctatgcgaa gagcccgacc gcccagtcgg
     3541 tccgcgcgaa gatgccggcc atttcggaag aggtgctgat gcgccaggcc ccgatgctcc
     3601 ggcggatgac ggcgggcgcg gtgaagaccg cggtcgaact gacctgcgag gagaaccact
     3661 gcaccgccga ccagcgatcg accctcatgg cggtggcggc gaaggtggcg ccggggtcct
     3721 agaggcaggg ccaccgccct ttcgggcgcg ggggcgcgcg cggggtgaat tcgccctatc
     3781 ctccggacga gaccgatcgg gaggatgggg cgtgaagcag gcattgcggg ttctgaaggc
     3841 gctggctgtg ggtctgacgc tggccggcct ggttggggcg cgcgccgcgc gggccgccga
     3901 cgccgcggcg aacccggctc aggcctggtg ggcgggctat ctggccaacg cccaggccgt
     3961 gaagctgccc gacggccggt cgatgaccct ctattgcgaa ggccagggcg ctcccgtcgt
     4021 ggtgctggag tcgggcctcg gcgacggggc ctggagctgg gcccgggtgc aggatcagat
     4081 ggccgccagg acccgggtct gcagctatga c
//
LOCUS       DATAJL010000061         1555 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_1145,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000061 DATAJL010000000
VERSION     DATAJL010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1145"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..931)
                     /gene="pseB"
                     /locus_tag="VHN39_01100"
     CDS             complement(<1..931)
                     /gene="pseB"
                     /locus_tag="VHN39_01100"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEX2814960.1"
                     /translation="MGRFAPTNLDLDGKVILVTGGTGSFGRRFVETVLTRCQARKVII
                     YSRDELKQSEMLSDLAERYPPEKMATLRFFLGDVRDRERLILATRGVDLIIHAAALKQ
                     VPAAEYNPSECIHTNIMGAENVVWACLSNRIKQVIALSTDKACNPINLYGATKLASDK
                     TFVAANNLAGDIGTRFSVVRYGNVVGSRGSVAPLFQRLIAKGATELPITDPRMTRFWI
                     TLTEGVEFVLSSLGVMHGGEIFVPKIPSMKMTDLAHAMAPDLPIKVVGIRPGEKLHEM
                     MISADDARSTADLGDRYAIEPAFVEYPRTSFRVN"
     gene            1027..1419
                     /locus_tag="VHN39_01105"
     CDS             1027..1419
                     /locus_tag="VHN39_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat pathway signal protein"
                     /protein_id="HEX2814961.1"
                     /translation="MRRRTVLALIVLAPSGAWAADDGKKKKSGGLNYIPINPITGTTN
                     KSGGRRGVLSVDCGLEVDDPKLRDYAEKSLPRLRAAYEQVIQIYAAGLPSGSEPNTEF
                     IVQALQRQTDLILKQPGARFLVGAVVVS"
     gene            complement(1432..>1555)
                     /locus_tag="VHN39_01110"
     CDS             complement(1432..>1555)
                     /locus_tag="VHN39_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2814962.1"
                     /translation="PLGHIGEPDDIANACLYLASDESKFMTGAEMKLDGGISAM"
BASE COUNT          273 a          504 c          517 g          261 t
ORIGIN      
        1 cgttcacccg aaaggatgtg cggggatatt ccacgaaagc cggctcgatg gcgtagcggt
       61 cgccgaggtc ggcggtggag cgggcgtcgt cggcgctgat catcatctcg tgcagcttct
      121 cgcccggccg gatgcccaca accttgatcg gcaggtccgg cgccatggcg tgggccaggt
      181 cggtcatctt catggagggg atcttcggca cgaagatctc gccgccgtgc atgacgccca
      241 gggaggagag cacgaactcg acgccctcgg tgagcgtgat ccagaaccgg gtcatccgcg
      301 ggtcggtgat cgggagctcc gtcgcgccct tggcgatcag ccgctggaac agcggggcga
      361 cggaacctct ggagcccacc acattgccgt agcgcaccac cgaaaaccgg gtgccgatgt
      421 cgccggccag gttgttggcc gccacgaagg tcttgtccga ggcgagcttg gtcgccccat
      481 agaggttgat cgggttgcag gccttgtcgg tggagagcgc gatcacctgc ttgatgcggt
      541 tgctgaggca ggcccagacc acattctcgg cgcccatgat gttggtgtgg atgcactccg
      601 agggattgta ctccgccgcc ggcacctgct tcagcgccgc ggcatggatg atcaggtcga
      661 cgccgcgggt ggccaggatc agccgctcgc ggtcgcgcac gtcgcccagg aagaagcgca
      721 gggtggccat cttctccggc ggatagcgtt cggcgagatc ggacagcatc tcgctctgct
      781 tcagctcatc gcgggaatag atgatgacct tgcgcgcctg gcagcgggtc agcaccgtct
      841 ccacgaagcg gcgcccaaag gagccggtgc cgccggtgac gaggatgacc ttgccgtcga
      901 ggtcgaggtt ggtcggcgca aatcggccca aggcgagctc cggaagccgc aaatcttagc
      961 gtgccaccgc cttgtcgcag gcgcacgtaa agagaccgct aaccataatc gagatagatg
     1021 gagcgcatga gacgccgcac tgttctcgcc ctcatcgtgc ttgccccctc cggcgcctgg
     1081 gccgccgacg acggcaagaa gaagaaatcc ggcggcctca actacattcc gatcaacccg
     1141 atcaccggca ccaccaacaa gtccggcggc cggcgcggcg tgctcagcgt cgactgcggc
     1201 ctcgaggtcg atgatccaaa gttgcgcgac tacgccgaaa agtcgctgcc tcgcctgcgc
     1261 gccgcctatg aacaggtcat ccagatctac gccgcgggcc tgccctcggg ctccgagccc
     1321 aacaccgagt tcatcgtcca ggcgctgcag cgccagacgg acctgatcct caaacagccc
     1381 ggcgcgcgct tcctggtggg cgcggtggtg gtgagctagc ggtcaagcgc ttcacatcgc
     1441 cgagatgccg ccgtcgagct tcatctccgc gccggtcatg aacttcgact cgtcggaggc
     1501 cagatacagg caggcgttgg cgatgtcgtc gggttcgccg atgtggccca gcggc
//
LOCUS       DATAJL010000062         3849 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_13993,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000062 DATAJL010000000
VERSION     DATAJL010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3849)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3849)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3849
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13993"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..369)
                     /locus_tag="VHN39_01115"
     CDS             complement(<1..369)
                     /locus_tag="VHN39_01115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ornithine
                     acetyltransferase/N-acetylglutamate synthase"
                     /protein_id="HEX2814963.1"
                     /translation="MTRKPSPVSKAAKALEAASRPVEAVGQTLERAFKQAAKQARQFA
                     EAAPSASLAASPKGEAMPISPLAVPFPKMPPIAGVQMATSRAGFYKHERDDLLVMSFP
                     DGASCAGVFTRQGVGSAPVDW"
     gene            complement(366..1352)
                     /locus_tag="VHN39_01120"
     CDS             complement(366..1352)
                     /locus_tag="VHN39_01120"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX2814964.1"
                     /translation="MADVRSSRSAFLAGVMIAMMLAGTLSLAACGRGGGTEHAPERGD
                     RAVAKVDGKTVWSSDVKREAVSQGLIGEGEPLDVSSDVFRRVLDEVVDQRLLAGEAAR
                     RKLDKDPVAQRRLAAAHDRVLGDMLVESVVADAVNDNAVRGLYQEQLKLAKRSEEIHA
                     RRIVLGTAAEAETVRKLLATGASFEGLAMQKSTDAATRFDGGDMGYFTIDVMPEAYDA
                     PLKTAKPGQIVGPFPVEGGFALVKVEDRRVEQPITLEAARPQIVRFLTYDQIRDLLEK
                     LRGRAKVEVMVKTDTPSQTLPPADAPHGDAPKTGVSPAVIPPPALPAKGGRK"
     gene            1510..2679
                     /locus_tag="VHN39_01125"
     CDS             1510..2679
                     /locus_tag="VHN39_01125"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX2814965.1"
                     /translation="MREAVIVSYARTGLAKSVRGGFNITPTVSIAAHSVKHAVAKAGI
                     EGVAVEDIFMGNVAHGGGNVARQAGLLAGLPITTSGVTVNRFCSSGLQTIGMAANFVR
                     NDGADVVVAGGVETISMPNMGTGKDNNDPELSRMYPAIFMPMIDTADIVAERYKLSRE
                     YQDEYSLESQRRMAAAQQAGKFKDEIVPMKTKMKLVNKETKEETIVDYVVDKDECNRP
                     DTSAEGLARLEPVRGEGKFITAGNASQLSDGSAAVVIMEAKEAQRRGLTPMGVFRGWA
                     VAGCEPDEMGIGPVFAIPRLLERHGLKVDDIDLWELNEAFASQCLYSRDKLGIDPEKY
                     NVNGGSIAIGHPFGMTGARLAGHVLQEGKRRGAKNVVVSMCIGGGMGAAGLFEVV"
     gene            2736..3479
                     /locus_tag="VHN39_01130"
     CDS             2736..3479
                     /locus_tag="VHN39_01130"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2814966.1"
                     /translation="MDVKSYRSPFFWGVQDMAGFQASLDGLMAAARVKRGWFAGDNLI
                     AFGRNLGFLNDERFIKAWDTHAKLPHERGVMWRTATVVWAARQALRRDGDFIECGCYK
                     GTSARILIDSVDLSERRYFLYDLFEHDAAMNHNAMPEHGAGLFDFVQDRFAAFPNVTV
                     IKGPVPESFSQGLPEKIVFAHIDMNNAPAEIGALDAIERRLVPGAMIVLDDFGALPYR
                     AQHIAETEWFARRGIPVLELPTSQGLAIW"
     gene            complement(3550..>3849)
                     /locus_tag="VHN39_01135"
     CDS             complement(3550..>3849)
                     /locus_tag="VHN39_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2814967.1"
                     /translation="AAEFDLILMDVQMPEMGGVAATMLIRAEEAERGVSPIPIIALTA
                     NAMSHQVDQYLAAGMTAHVAKPIDFAALCAAMQEVLAGAPETSREPAASRENSPV"
BASE COUNT          609 a         1310 c         1326 g          604 t
ORIGIN      
        1 ccagtcgacg ggcgcggagc ccacgccctg gcgggtgaag acgccggcgc agctcgcccc
       61 gtcggggaag ctcatcacca gcaggtcatc gcgctcgtgc ttgtagaagc cggcccgcga
      121 ggtcgccatc tgcaccccgg cgatcggcgg catcttcggg aagggcacgg cgagcggtga
      181 gatcggcatg gcctcgccct ttggcgaggc ggcaagggac gccgaggggg ccgcctcggc
      241 gaactgccgc gcctgtttgg cggcctgctt gaaggcgcgc tccagggtct ggccgacggc
      301 ctccacgggg cgtgaggccg cctccagagc cttggcggcc ttggacaccg ggctgggctt
      361 cctggtcact tcctgccccc cttggccggg agcgcgggcg gcgggatcac agccggagag
      421 acgccggtct ttggcgcgtc gccatggggc gcgtcggccg gcgggagtgt ctggctgggg
      481 gtgtcggtct tgaccatcac ctcgaccttg gcgcggcccc gcagcttctc caagaggtcg
      541 cggatctgat cgtaggtcag gaagcgtacg atctgcggcc gggcggcctc cagcgtgatc
      601 ggctgttcga cacggcggtc ctcgaccttg accagggcga agccgccctc gaccgggaaa
      661 ggcccgacaa tctgaccggg cttggcggtc ttgagcggcg cgtcataggc ctccggcatc
      721 acgtcgatgg tgaaatagcc catgtccccg ccgtcaaacc gggtggccgc gtcggtggat
      781 ttctgcatgg ccagcccttc gaaggaggcg cccgtcgcca ggagtttgcg cacggtctcg
      841 gcctcggcgg cggttcccag cacgatccgg cgggcgtgaa tttcctcgga ccgtttcgcg
      901 agcttcagct gctcctggta gaggccgcga acggcgttgt cgttgaccgc gtcggcgacc
      961 acgctttcca ccagcatgtc gcccagcacg cggtcgtgcg cggcggccag gcggcgttgc
     1021 gcgaccgggt ccttgtcgag cttgcggcgc gcggcctccc cggccagcag ccgctggtcg
     1081 accacctcgt cgagcacccg gcggaacacg tccgatgaga cgtccagcgg ctcgccctcg
     1141 ccgatcaggc cctgggacac cgcctcgcgc ttgacgtcgg acgaccagac ggtcttgccg
     1201 tccaccttgg ccacggcgcg gtcgccgcgc tccggggcat gctcggtccc gccgccgcgg
     1261 ccgcaggcgg ccaggctcag cgtcccggcc agcatcatgg cgatcatcac gccggccagg
     1321 aatgcggagc gggaggaccg gacgtcggcc atgcggatca ccctcgattg ggatgggagt
     1381 tcgcgcgcca gagacctctt tggagcgccg cccgtcccta gccatttacg tcccgggatg
     1441 caaaggttgc gcccgaatgc gcccggaaga cgaggcgctg cggaccaata tttcggagga
     1501 tcatttaaaa tgcgcgaagc tgtcatcgtc tcctacgccc gcaccggcct ggcgaagtcc
     1561 gtccgaggcg gattcaacat cacgcccacg gtctccatcg ccgcccattc ggtgaagcac
     1621 gctgtggcca aggccggcat cgagggcgtc gcggtcgagg acatcttcat gggcaatgtg
     1681 gcccacggcg gcggcaacgt ggcgcgccag gcgggcctgc tcgcggggct tccgatcacc
     1741 acctccggcg tgaccgtcaa ccgcttctgc tcgtccggcc tgcagaccat cggcatggcc
     1801 gccaacttcg tgcgcaacga cggcgccgac gtggtggtgg ccggcggcgt ggagaccatc
     1861 tccatgccca acatgggcac cggcaaggac aacaacgatc ccgagctcag ccgcatgtat
     1921 ccggcgatct tcatgccgat gatcgacacc gccgacatcg tcgccgagcg ctacaagctc
     1981 agccgcgaat accaggacga atattccctg gagtcccagc gccggatggc cgccgcccag
     2041 caggccggca agttcaagga cgaaatcgtc ccgatgaaga ccaagatgaa gctggtcaac
     2101 aaggagacga aggaagagac catcgtcgac tacgtggtcg acaaggacga gtgcaaccgg
     2161 cccgacacct cggccgaggg cctcgccagg ctcgagccgg tgcgcggcga aggcaagttc
     2221 atcaccgccg gcaacgcctc ccagctctcc gacggctcgg ccgccgtggt gatcatggag
     2281 gccaaggaag cccagcgccg gggcctcacc cccatgggcg tcttcagggg ctgggcggtg
     2341 gccggctgcg agcccgacga gatgggcatc ggcccggtgt tcgcgatccc gcgcctcctg
     2401 gagcgccacg gcctgaaggt cgacgacatc gacctgtggg agctgaacga ggccttcgcc
     2461 tcgcagtgcc tctacagccg cgacaagctg ggcatcgatc cggagaagta caacgtcaac
     2521 ggcggctcca tcgccatcgg ccaccctttt ggaatgaccg gcgcgcgcct ggccggccac
     2581 gtcctgcagg aaggcaagcg ccgcggggcc aagaacgtcg tggtctccat gtgcatcggc
     2641 ggcgggatgg gcgcggcggg cctgttcgaa gtcgtctgaa ccgttccttc ggcccagccg
     2701 ttggtcaaaa ccgtctcggc ggctaagggc tggccatgga tgtaaaatcg taccgcagcc
     2761 cgttcttctg gggcgtccag gacatggccg gcttccaggc cagcctcgac gggctgatgg
     2821 cggcggcgcg ggtgaagcgg ggctggttcg ccggcgacaa cctgatcgcg ttcgggcgga
     2881 acctcggctt cctgaacgac gagcggttca tcaaggcctg ggacacccac gccaagctgc
     2941 cccacgagcg cggggtcatg tggcgcaccg ccacggtggt ctgggcggcc cggcaggccc
     3001 tgcgccgcga cggcgatttc atcgagtgcg gctgctacaa gggcaccagc gcccgcattc
     3061 tgatcgacag cgtcgacctc tccgagcggc gctatttcct ctacgacctg ttcgagcacg
     3121 acgcggcgat gaaccacaac gccatgccgg agcacggggc gggtctgttc gacttcgtgc
     3181 aggatcgctt cgcggccttc cccaatgtga cggtgatcaa ggggcctgtg ccggagagct
     3241 tctcccaggg cctgccggag aagatcgtct tcgcccacat cgacatgaac aacgccccgg
     3301 ccgagatcgg ggcgctcgac gccatagagc gccgcttggt tccgggcgcg atgatcgtcc
     3361 tggacgactt cggcgccctg ccctaccgcg cgcagcacat cgccgagaca gaatggttcg
     3421 ccagacgcgg aatcccggtg cttgagttgc caaccagcca gggactggcc atctggtagg
     3481 gtaatcgcgc cttaggtgcg cgggcccgtc gcgttgacgg ggggtgcgcc gcttaagtct
     3541 cccgcgccct caaacgggcg aattttcccg actggcggcg ggctcgcgcg acgtctccgg
     3601 cgcaccggcc agcacctcct gcatggcggc gcagagggcg gcgaagtcga tgggtttggc
     3661 gacgtgggcg gtcatgccag ccgcgaggta ctggtcgacc tggtggctca tggcgttggc
     3721 ggtgagggcg atgatcggga tcgggctgac tccgcgctcg gcctcctccg cgcggatcag
     3781 catggtggcc gccacgccgc ccatctccgg catctggaca tccatgagga tcaggtcgaa
     3841 ctcggcggc
//
LOCUS       DATAJL010000063         2090 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52579,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000063 DATAJL010000000
VERSION     DATAJL010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2090
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52579"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..425
                     /locus_tag="VHN39_01140"
     CDS             <1..425
                     /locus_tag="VHN39_01140"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEX2814968.1"
                     /translation="LGMLDTDDPAHARLEDLLVDLLAAAETAPLELPLPTDPRAMGFA
                     ERLLADPGATLSLAHMARGAGASLRTLQRLFLAETGLSLETWRGRVRMQQAVVSLSAG
                     APVTEAALDAGYLSASAFIAAFKRAFGVTPARYRPVQS"
     gene            complement(416..634)
                     /locus_tag="VHN39_01145"
     CDS             complement(416..634)
                     /locus_tag="VHN39_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814969.1"
                     /translation="MTRGRWASFAVFCVYAPIGVGGFLCLGWTWQGLAAFFVTYLIGK
                     LIADWVFGRVASAQEKQQVMEERVRDYD"
     gene            complement(631..1794)
                     /locus_tag="VHN39_01150"
     CDS             complement(631..1794)
                     /locus_tag="VHN39_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase"
                     /protein_id="HEX2814970.1"
                     /translation="MANPIFSSLPTTIFEEMSGLARSLGALNLGQGFPDDPGPEAIRV
                     KAADAVLNGYNQYPPMAGLPELRAAVAGHYQRTQGLDLDPMSEVTITSGATEALAAAF
                     LGLIEPGDEVIVFQPVYDSYLPVIRLAGGVPKLISLQPPRWRFDRAMLEAAFTEKTRF
                     VVLNNPNNPAGTVLPDEDLALLAELCVKHDVIAICDEVWEQVVFGNAIHRPLIAYPGM
                     RERCVKIGSAGKMFGLTGWKVGFLCAAPQLTHSLARAHQFLTFTTPPNLQTAVAWGLD
                     NADDWFATMPRGLERSRDRLSEGLKREGFAVLPAQGTYFLNLDLPASGIDETDRDFCL
                     RAVKAAGVAAIPVSALYEEDPVTHIVRLCFSKRDETLDAGIERLARARDGTPP"
     gene            1855..>2090
                     /locus_tag="VHN39_01155"
     CDS             1855..>2090
                     /locus_tag="VHN39_01155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEX2814971.1"
                     /translation="MEIVEFSPEHAEAFRTLNEAWISKYFTLEAKDRQVLGDPQGKIL
                     AKGGRIFMAIAAGEPVGCAALLKMADGGYEVAKMT"
BASE COUNT          331 a          700 c          742 g          317 t
ORIGIN      
        1 gattaggcat gctcgacacc gacgacccgg cccacgcccg gctggaggat ctgctggtgg
       61 acctcctggc cgcggcggag accgcgcccc tggagctgcc gctgccgacc gacccgcgcg
      121 ccatgggctt tgccgagcgg ctgctggccg acccgggcgc gaccctctcg ctggcccata
      181 tggcgcgcgg cgccggggcg agcttgcgca ccctgcagcg cctgttcctg gccgagacag
      241 gcctgtcgct ggagacctgg cgcgggcggg tgcggatgca gcaggcggtg gtcagcttga
      301 gcgccggcgc gcccgtgacc gaggccgcgt tggacgccgg atacctgagc gccagcgcct
      361 tcatcgccgc tttcaagcgg gccttcgggg tcacgcccgc ccgctatcgc cccgttcagt
      421 cgtagtcgcg gacccgctct tccatgacct gctgcttttc ctgcgcgctc gcaacgcggc
      481 cgaacaccca gtcggcgatg agctttccga tcaggtaggt cacgaaaaag gcagccagtc
      541 cctgccaggt ccaacccaga cacaggaatc cgcccacgcc gatcggcgcg tagacgcaga
      601 agacggcgaa gctcgcccag cgtccgcggg tcatggcggc gtcccgtccc gcgcccgggc
      661 caggcgctcg atgcccgcgt ccagggtctc gtcgcgtttg gagaagcaca ggcgcacgat
      721 gtgggtcacc gggtcctcct catagagcgc cgagacgggg atcgccgcga cgcccgccgc
      781 cttgaccgcg cgcaggcaga agtcgcggtc ggtctcatcg atgcccgagg ctggcagatc
      841 aaggttgagg aaataggtgc cctgcgcggg cagcaccgcg aagccctcgc gcttcagccc
      901 ctcgctcagc cggtcgcggg agcgttcgag gccgcgcggc atggtcgcga accagtcgtc
      961 ggcgttgtcg aggccccagg cgacggcggt ctgcaggttg ggcggtgtgg tgaaggtcag
     1021 gaactggtgg gcgcgggcca ggctgtgggt gagctgcggc gcggcgcaga ggaaccccac
     1081 cttccagccg gtcaggccga acatcttgcc ggccgagccg atcttcacgc accgctcgcg
     1141 catgcccgga taggcgatca gcgggcggtg gatggcgttg ccgaacacca cctgctccca
     1201 gacctcgtcg cagatggcga tgacgtcgtg cttcacgcag agctcggcga gcagggccaa
     1261 gtcctcgtcc ggcagcacag ttccggcggg attgttcggg ttgttcaaca ccacgaaccg
     1321 ggtcttctcg gtgaaggccg cctccagcat ggcccggtcg aaccgccagc gcggcggctg
     1381 caggctgatg agcttcggca cgccgccagc caggcggatg accggcagat aggaatcgta
     1441 gacgggctgg aagacgatca cttcatcgcc cggctcgatc aggcccagga acgcggcggc
     1501 cagcgcctca gtggcgccgg aggtgatggt cacctcgctc atggggtcga ggtcgaggcc
     1561 ctgggtgcgc tgatagtggc cggccaccgc ggcccgcaac tccggcaggc cggccatcgg
     1621 cggatactgg ttgtagccat tgaggaccgc gtcggccgcc ttgacccgga tcgcctcggg
     1681 accgggatcg tcggggaagc cctggccgag gttcagggcg cccaggctgc gcgcgagacc
     1741 ggacatctct tcgaagatcg tggtcggcag gcttgagaag atcgggttgg ccattagatc
     1801 atctaaggtg aggggaagct tcgccttcat gacctgaccg gaggccgcgc gtccatggag
     1861 atcgtcgagt tcagcccaga gcatgccgag gccttccgga cgctcaacga ggcctggatc
     1921 tccaaatact tcaccctgga ggccaaggac cgccaggttc tgggggaccc gcagggcaag
     1981 atcctcgcca agggcggacg gattttcatg gcgatcgcgg ccggcgagcc ggtgggctgc
     2041 gcggccctcc tgaagatggc cgacggcggc tatgaggtgg ccaagatgac
//
LOCUS       DATAJL010000064         1560 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52585,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000064 DATAJL010000000
VERSION     DATAJL010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52585"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1476
                     /locus_tag="VHN39_01160"
     CDS             208..1476
                     /locus_tag="VHN39_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2814972.1"
                     /translation="MARTNSRDQELRARAEAVIPGGMYGHQSTGLLPDDYPQFFERGE
                     GAHIWDVDGRKYLDMMCAYGPNLFGYANPQIDAAYVRQLGLGDTLTGPTALMVELAEA
                     FVGMVSHADWAMFCKNGTDATLMALMTARAHTRRKTVILAKGAYHGAAPWCAQRPVGT
                     IPEDKAGQVMCDYNDVASLEAAAQAAGDDLAAIFAAPLKHDAFVDQVRPSVAYARRAR
                     EICDATGALLVVDDVRAGLRIARDCSWSKIGVAPDLSTWGKCIANGHPISALMGSDVA
                     RRAARSLYATGSYWFAAAPMAAALATLRRVRESDYLEHIEALGERLRAGLAERATAYG
                     IGLRQSGPVTMPLFLFEDDPDLRRGFCWGGEMLKRGVYVHPWHNMFLCAAMTEADIDE
                     ALDAADGAFGVLKGQAATLAPVAKMSFLTA"
BASE COUNT          254 a          523 c          544 g          239 t
ORIGIN      
        1 ggtcaaaagt gtcgctcgat cccgcgatca ctataacccc tcccacaggg ggaggaggat
       61 cccgaaactg cagaaatacg cagagaggcc gggtcacacc gagcgcctcc gcgcatctct
      121 gcgatctccg cggttgatca aggcgtcggc tgtggacgcc gccgcgccct cgcgtaatgt
      181 gtgatcagtg atcagggaga cgccgccatg gcccgcacca acagccgcga tcaggaactc
      241 cgggcccgcg ccgaggcggt catcccgggc gggatgtacg gccaccagtc caccggcctg
      301 ctccccgacg actatccaca gttcttcgag cgcggcgaag gcgcccatat ctgggacgtc
      361 gatggccgca agtacctcga catgatgtgc gcctacgggc cgaacctgtt cggttacgcc
      421 aatccgcaga tcgacgcggc ctatgtgcgc cagttgggcc tgggcgacac cctgaccggg
      481 cccaccgccc tgatggtcga gctggcggaa gctttcgtgg gcatggtcag ccacgccgac
      541 tgggcgatgt tctgcaagaa cgggaccgac gccaccttga tggccctgat gacggccagg
      601 gctcacacgc ggcgcaagac ggtgatcctg gccaagggcg cctatcatgg ggcagcgccg
      661 tggtgcgccc agcggccggt ggggactatc cccgaggaca aggccggcca agtgatgtgc
      721 gactacaacg atgtcgccag cctcgaggcg gcggcgcagg cggcggggga tgacctggcc
      781 gccatcttcg ccgccccgct caagcacgac gccttcgtcg atcaggtccg accgagcgtc
      841 gcctacgccc gccgggcgcg ggagatctgc gacgccacgg gcgcccttct ggtggtcgat
      901 gacgttcgcg ccggcctgcg catcgcgcgc gactgcagct ggtcgaagat cggcgtggcg
      961 cccgatctgt cgacctgggg caagtgcatc gccaacggcc atccgatctc ggccctgatg
     1021 ggatcggatg tggcgcgacg ggcggccagg agcctctacg ccaccggctc gtactggttc
     1081 gcggcggcgc ccatggccgc ggcgctggcg actctgaggc gggtgcggga gagcgactat
     1141 ctcgagcaca tcgaggccct gggcgagcgg ttgcgggcgg gcctggccga gcgtgcgacg
     1201 gcgtacggga tcgggcttcg ccagagcggg cccgtgacca tgccgctctt cctgttcgaa
     1261 gatgaccccg atctgcgcag aggcttctgc tggggcggcg agatgctgaa gcgcggcgtc
     1321 tacgtgcatc cctggcacaa catgttcctc tgcgcggcca tgaccgaggc cgacatcgac
     1381 gaggcgctgg acgccgccga cggcgcgttc ggggtgctca agggccaggc ggccacgctg
     1441 gcgccggtgg ccaagatgag ctttctgacg gcgtgacggc gtccgaccca cgctgaccgc
     1501 gttggacgcc gccacgtgtt catgattgtc gaaacgtctc gactcaggcg aggtcgccaa
//
LOCUS       DATAJL010000065         1834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_103619,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000065 DATAJL010000000
VERSION     DATAJL010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103619"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1005)
                     /locus_tag="VHN39_01165"
     CDS             complement(<1..1005)
                     /locus_tag="VHN39_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEX2814973.1"
                     /translation="MDEASLRTLRWRVEGLPVRLGQILLIGGIFWLYVRGSLPIWWSA
                     AAIATALIDADLSRRHLAQLDNWRFAVLTTLSRTASAGAFAAVCFVLLTDRSGVGLAA
                     AMLVGCAMNLNNAVMTRGSRRFFLSTVAPTSVCLVAVPFVAWRIGQSLSLAGAGILTV
                     GAVAYAVFIALLARALFNESQALRSALEAAEAASRSKSTFLAVTSHEIRTPLNGVLGM
                     AQAMENDTLSRVQRGRVGVIRQSGEALLEILNDILDLAKIEAGKLDLETAPFDVEAVT
                     LSAVRAFSATALAKGLTYGVDFDPAASGSYDGDSARLRQVLCNLISNAVKFTETGEVA
                     V"
     gene            1206..>1834
                     /locus_tag="VHN39_01170"
     CDS             1206..>1834
                     /locus_tag="VHN39_01170"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEX2814974.1"
                     /translation="MDAAFDVEPLPATFGATVTGLRLAELSDEAFAALYATWLDHGLL
                     IFPGQHLSKTEQVAFAARFGALEFDLAPISNVRPDGTLRPDDGSDDAVKVLRGNMGWH
                     CDSTYMPVQAKGAVFTAHIVPATGGETGWADMRAAYDALTPAMRTRVESLSAYHSLAY
                     SQGKLGHAHAAGSAYSGYGMQVAAPPLRPLVKTHPETGRKCLMVGRHAYG"
BASE COUNT          315 a          646 c          611 g          262 t
ORIGIN      
        1 gaccgccacc tcaccggttt ctgtgaattt cacggcgttg gagatcaggt tgcacagcac
       61 ctggcgcaga cgggcggaat cgccgtcata ggacccgctc gccgccgggt cgaagtcgac
      121 gccataggtc aggcccttgg cgagcgcggt tgcgctgaag gcccgcacgg cgctgagcgt
      181 caccgcctcg acatcgaaag gcgcggtttc caggtcgagc ttgccggcct cgatcttcgc
      241 caggtcgagg atgtcgttga ggatttccag cagcgcctcg ccggattggc ggatcacgcc
      301 cacccggccc cgctggaccc gcgacagggt gtcgttctcc atggcctggg ccatgcccag
      361 aacaccgttc aggggcgtgc gaatctcgtg gctggtcacc gcgaggaagg tgctcttgga
      421 ccggctggcc gcctccgccg cctcaagcgc ggagcgcagc gcctggcttt cgttgaacag
      481 cgcccgggcc aggagcgcga tgaacacagc ataggccacc gctccgacgg tcagaatccc
      541 ggcgcccgcc aggcttaacg actggccgat tctccaggcg acgaagggaa ccgccaccag
      601 gcaaaccgat gtcggcgcca cggtgctcag gaagaaacgc cgcgagccgc gggtcatcac
      661 cgcgttgttg aggttcatgg cgcagcccac cagcattgcc gcagccaggc cgacgccgga
      721 ccggtcggtc aggaggacga agcacaccgc ggcgaaggcc ccggcggagg ccgttcggct
      781 gagcgtggtc aggacggcga agcgccagtt gtcgagctgt gcgaggtggc gtcgcgacaa
      841 atccgcgtcg atcagggccg tggcgatcgc cgcggccgac caccaaatgg gcagcgaacc
      901 ccggacgtag agccagaaga tcccgccgat cagcagaatc tggccaaggc gcacaggcag
      961 gccctcgacg cgccagcgca gtgttctgag gcttgcttcg tccatagccg ccataaggcc
     1021 gtgctccgtg ggcgccgtcg tcgacgcctg accaaagcat ggcaacactt tgcaaataga
     1081 gaacgcagcg aaccgcgatc gccgaatgga tggacaggtt gtcgcaggtc ccggcgcacg
     1141 ggtttccctt agcggcggcg ggccgccggg agtaacttcg cggccaagga tcgcgaggat
     1201 ctcgcatgga cgccgccttc gacgtagagc ccctgcccgc caccttcggg gcgacggtca
     1261 ccgggctcag gctcgcagag ctctccgacg aggccttcgc cgcgctctac gcgacctggc
     1321 tcgaccatgg cctgctgatc ttccccggcc agcatctgag caagaccgag caggtggcgt
     1381 tcgcggcccg cttcggggcg ctggagttcg acctggcgcc gatctccaac gtccgccccg
     1441 acgggaccct gcgccccgac gacggctccg acgacgcggt caaggtgctg cggggcaaca
     1501 tgggctggca ctgtgactcg acctatatgc cggtgcaggc caagggcgcg gtgttcaccg
     1561 cccacatcgt cccggccacg ggcggcgaga ccggctgggc cgacatgcgc gcggcctatg
     1621 acgccctgac gccggccatg cggacccgcg tcgaaagcct cagcgcctac cattcgctgg
     1681 cctacagcca gggaaagctc ggccacgccc acgccgccgg cagcgcctat tccggctatg
     1741 gcatgcaggt cgccgccccg ccgctgcgcc ccctggtcaa gacccacccg gaaaccggcc
     1801 gcaaatgcct gatggtcggc cgccacgcct acgg
//
LOCUS       DATAJL010000066         2405 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_90733,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000066 DATAJL010000000
VERSION     DATAJL010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2405
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90733"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1627)
                     /gene="cobT"
                     /locus_tag="VHN39_01175"
     CDS             complement(<1..1627)
                     /gene="cobT"
                     /locus_tag="VHN39_01175"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051116 - cobaltochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobT"
                     /protein_id="HEX2814975.1"
                     /translation="MAKNPESPLEPFKRALVNATRSLAESPDLEIVYSGEGPQLSGNR
                     AVLPHPPRDLTSVDAARIRGFADQMALRIAHHDVAAHAKTRPASVQGQPIYDGIEQAR
                     LEAIGANALGGVRENLKAVHEQAWAKRAFNQIEALANPPLADVVQLMVRERLTGDKPP
                     AMAQPLVNLFRDEIEAKAGPDLDRLTEAVADQKAFARIARAIIRDLKMGDDLSDAQDQ
                     PDNEDSGEDGEPEGSDENDEGDGEGKSPQQSSMDENEASHRESEDADSQMMQAEDDPD
                     ADESDEPPDMGEGDQPARPDLKGEGRQVTYKVFTTAHDEIVAAEELCDAEELTRLRAY
                     LDQQLASLSNVVSRLANRLQRKLLAQQNRSWSFDLEEGILDVARLTRVIVDPTAPLSF
                     KEEKDTEFRDTVVSILIDNSGSMRGRPIMVAAVCADILARTLERCGVKTEILGFTTRA
                     WKGGSAREDWLKAGKPPQPGRLNDLRHIIYKAADAPWRRARRNLGLMMREGLLKENID
                     GEALDWAHQRLLGRTEQRKILMMISDGAPVDDST"
     gene            1797..1976
                     /locus_tag="VHN39_01180"
     CDS             1797..1976
                     /locus_tag="VHN39_01180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 family protein"
                     /protein_id="HEX2814976.1"
                     /translation="MLKWAIVFAVVALIAGGLGFGGVAGAAAGVAKILFFLFAVGFVI
                     FLALGVMAGRKLSGR"
     gene            2140..>2405
                     /locus_tag="VHN39_01185"
     CDS             2140..>2405
                     /locus_tag="VHN39_01185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814977.1"
                     /translation="MRRLTKLIRNLGLAMAGLLALGAGAAMAQAAPHTLLGIDCNAPP
                     VWHCPDTECQAAWVVQQGTAVEMKTRRPFFLDCPKDYRPGEKVNV"
BASE COUNT          298 a          816 c          855 g          436 t
ORIGIN      
        1 gcgtggaatc gtcgaccggc gcgccgtccg agatcatcat caggatcttt cgttgctcgg
       61 tgcggccgag caggcgctgg tgcgcccaat ccagcgcctc gccgtcgatg ttctccttca
      121 gcagcccctc gcgcatcatc aggccgaggt tgcgccgcgc gcgccgccag ggcgcgtcgg
      181 cggccttgta gatgatgtgg cgcaggtcgt tgagccggcc gggctgcggc ggcttgccgg
      241 ccttcagcca gtcttcccgg gccgagccgc ccttccacgc gcgggtggtg aacccgagaa
      301 tctcggtctt gaccccgcac cgctccagcg tgcgggccag gatgtcggcg cagacggcgg
      361 ccaccatgat cgggcgtccc cgcatggagc cggagttgtc gatcaggatc gagaccacgg
      421 tgtcgcggaa ctcggtgtcc ttttcttcct tgaaggagag cggcgcggtc gggtcgacga
      481 tcacccgggt cagccgcgcc acgtcgagga tgccctcctc gagatcgaag ctccaggaac
      541 ggttctgctg ggcgagcagc ttgcgttgca gccggttggc caggcgcgag accacgttgg
      601 acaggctcgc cagctgctgg tcgagatagg cccgcagccg ggtcagctcc tcggcgtcac
      661 atagctcttc cgccgccacg atctcgtcgt gggcggtggt gaagaccttg taggtgacct
      721 gccgcccctc gcccttcagg tcgggccgcg ccggctggtc gccttcgccc atgtcggggg
      781 gctcgtcgct ctcgtcggcg tcgggatcgt cctccgcctg catcatctgg ctgtcggcgt
      841 cctcgctctc gcggtgcgag gcctcgttct cgtccatgga ggactgctgc ggggacttgc
      901 cctcgccgtc gccctcgtcg ttctcgtcgc tgccctcggg ctcgccgtcc tcgccggaat
      961 cctcgttgtc cggctggtcc tgggcgtcgg agaggtcgtc gcccatcttc aggtcgcgga
     1021 tgatcgcgcg ggcgatacgg gcgaaggcct tctggtcggc caccgcctcg gtcagccggt
     1081 cgaggtcggg cccggccttg gcctcgatct cgtcgcggaa caggttgacc aggggctggg
     1141 ccatggccgg cggcttgtcg ccggtcagcc gctcgcggac catcagctgg accacgtcgg
     1201 ccaggggcgg gttggcgagc gcctcgatct ggttgaacgc ccgcttggcc caggcctgct
     1261 cgtggacggc cttgaggttc tcgcgcaccc cgccgagcgc attggcgccg atggcttcca
     1321 gccgcgcctg ctcgatcccg tcatagatcg gctggccctg gacggaggcc gggcgggtct
     1381 tggcgtgggc ggccacgtcg tggtgggcga tgcgcagcgc catctggtcg gcgaagccgc
     1441 ggatgcgggc ggcgtcgacg ctggtcaggt cgcgcggcgg atgcggcagc acggcgcggt
     1501 tgcccgagag ctgcggcccc tcgccggaat agacgatctc caggtccggc gactcggcca
     1561 gcgaccgcgt cgcgttgacc agcgcgcgct tgaagggctc cagcggactt tcggggttct
     1621 tggccatcgc ggtcgtctta gatcaggcgg gccaaggtaa gaaacaagga tttctcctcg
     1681 caccccctcg atcattcggt gcgctcacga acccggcatc cccggaacgc cacggccaag
     1741 ccggcgtttg ccacctcagg tcccgcatgg cgcgggcatt tctcggagag tgcggcatgc
     1801 tcaagtgggc aattgtattc gcggtggtcg ccctgatcgc cggcggtctg ggcttcggcg
     1861 gcgtggcggg cgcggcggcc ggcgtggcca agatcctgtt cttcctgttc gcggtcggct
     1921 tcgtgatctt cctggcgctt ggcgtcatgg cgggccgcaa gctctcgggt cgctagagtc
     1981 cccccgaggt cgcgtaacga gggcgcgtaa cgagggggcg cgggcgaaaa tccgcgccct
     2041 ttttcgtgcc tattgcagaa ctccctatcg ctgctaggtt tcccccgcgt gagccgcccg
     2101 gctgagtggc ggcctgttga aaccggggga ggctcgccga tgcggcgcct gacgaaactg
     2161 atccgaaatc tcgggctggc gatggccggc ctgctggcgt tgggcgccgg cgccgccatg
     2221 gcgcaggccg cgccgcacac cctcttgggc atcgactgca acgccccgcc ggtctggcac
     2281 tgcccggaca ccgagtgcca ggccgcctgg gtggttcagc agggcacggc cgtggagatg
     2341 aagacccgcc ggccgttctt cctggactgc ccgaaggact atcggcccgg cgagaaggtc
     2401 aacgt
//
LOCUS       DATAJL010000067         2799 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52599,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000067 DATAJL010000000
VERSION     DATAJL010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52599"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..773
                     /gene="coaE"
                     /locus_tag="VHN39_01190"
     CDS             150..773
                     /gene="coaE"
                     /locus_tag="VHN39_01190"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008263609.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEX2814978.1"
                     /translation="MILIGLTGSIGMGKSTTAAMFRDAGVPVYDADAAVHALYDTGGA
                     AVGPVGEAFPGVVRDGRVERETLRQAVLGNPEALKRLNAIVHPLVGRDRVGFFAKAEA
                     DGADLVVLDIPLLFETGGHANVDAIVVASAPAGMQRERVLARPGMTPDRLDAILAQQM
                     ADADKRARAHFVVDTSRGLEPARQQVAEIIASVRDPQFKPARDRTTG"
     gene            805..1509
                     /gene="dnaQ"
                     /locus_tag="VHN39_01195"
     CDS             805..1509
                     /gene="dnaQ"
                     /locus_tag="VHN39_01195"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HEX2814979.1"
                     /translation="MAREIVLDTETTGFEPSMGHRMVEIACLEIDDFVPTGRSFHTYI
                     DPCRDMPPDAERVHGLSGAFLKGKPKFEHPEVVDAFLDFIGDAPLIAHNAGFDRNFVN
                     HELGVVNRHPIHESRWIDTLALARVRFPGMHNSLDALCKRFKVSLADREKHGALIDAR
                     LLAEVYLELKGGRERRLELGAAAMVNAAVVASRAAYGERPRPLAIRSTDGEREIHASF
                     IRDVVKNDDLWKKFGV"
     gene            complement(1516..2019)
                     /gene="secB"
                     /locus_tag="VHN39_01200"
     CDS             complement(1516..2019)
                     /gene="secB"
                     /locus_tag="VHN39_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051262 - protein tetramerization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HEX2814980.1"
                     /translation="MTDTDAGAGAPETISDGADAQASGPGIRILAQFIRDLSFENPRA
                     PEALRGGAAQPQIDLGVEMNARSREDGYYEVDLKLSAKAVRDDGPIFVVELMYGGVFQ
                     IGGVGPEDMEPVLLIECPRYLFPFARRIIADVTSDGGYPPFLLDPIDFAGVYAARKAA
                     EAEPGHA"
     gene            2156..2785
                     /gene="timA"
                     /locus_tag="VHN39_01205"
     CDS             2156..2785
                     /gene="timA"
                     /locus_tag="VHN39_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM44-related membrane protein TimA"
                     /protein_id="HEX2814981.1"
                     /translation="MRNPDVLELIIFAGLAAIVLYQLYAVLGRRVGRQPEDSPAVPTT
                     SAAIERTTDQPATASDEDVALTGLAAVKARDPAFDVSRFLGGAKSAYEMIVKAFAAGD
                     RNQLRSLLAPPVMAGFDTAIAAREAESRTETVEFLHSPRADLEKAEVVGADLARVTVR
                     FLAEFRSRTKGPEGEGVEDRRTAELWTFERHLKSRDPNGLLAHVDAAEA"
BASE COUNT          438 a          981 c          953 g          427 t
ORIGIN      
        1 ctcgcccagg cccagcggct cggccgccgc acggtcgatg gcctggccat gctgatcggt
       61 caggcggtcc cgtccttcga agccttctac ggccagccgc cgccgtcggg cgtcggggtg
      121 cgtgcgctcg cgctgaaagc cttcggccag tgatcctcat cggcctcacg ggctccatcg
      181 gcatgggcaa gtcgacgacg gcggccatgt tccgggacgc cggcgtgccg gtctatgacg
      241 ctgatgcggc cgtgcacgct ctctatgaca ctggcggcgc ggcggtggga ccggtcggcg
      301 aggcctttcc gggcgtggtc agggacggcc gggtcgagcg cgagacgctg cggcaggcgg
      361 tgctggggaa ccccgaggcc ctgaagcgcc tgaacgccat cgtccatccc ctggtcggcc
      421 gagaccgggt cggtttcttc gccaaggccg aggctgatgg cgccgacctg gtggtcctcg
      481 acatcccgct gctgttcgag accggcggcc acgccaacgt cgacgccatc gtggtggcga
      541 gcgcgccggc cgggatgcag cgcgagcggg tgctggcccg gcccggcatg acgcccgacc
      601 gcctcgacgc cattctcgcc cagcagatgg cggacgccga caagcgcgcg cgcgcccatt
      661 tcgtggtcga cacctcccgc ggtctcgagc ccgcgcgaca acaggtggcc gagatcatcg
      721 cctccgtccg cgatccacag ttcaaaccgg cccgcgaccg tacgaccggt tgaatttcag
      781 gcccgaacgg gctcatgaaa ggtcatggcg cgcgagatcg tcctcgacac ggaaaccacc
      841 ggcttcgagc cctccatggg ccatcgaatg gtggaaatcg cctgcctgga gatcgacgac
      901 ttcgtgccca cgggccgcag cttccacacc tacatcgacc cctgccgcga catgccgccg
      961 gacgccgagc gggtgcatgg cctctccggc gcgttcctga aaggcaagcc gaagttcgaa
     1021 caccccgagg tggtcgacgc cttcctggat ttcatcggcg atgcgccgct gatcgcccac
     1081 aacgccggct tcgaccggaa tttcgtcaat cacgaactcg gtgtcgtgaa ccgccacccg
     1141 atccacgaaa gccgctggat cgatacgctc gccctcgccc gggtgcgctt cccggggatg
     1201 cacaattccc tcgatgcgct ctgcaagcgt ttcaaggtct cgctcgccga ccgcgagaag
     1261 catggcgccc tgatcgacgc ccgcctcctg gcggaggtct atctggagct gaagggcggc
     1321 cgcgagcggc ggctcgagct gggtgcggcg gcgatggtca atgcggcggt tgtcgccagc
     1381 cgcgccgcct atggcgaacg cccgcggccg ctggcgatcc gctcaaccga tggcgagcgc
     1441 gaaatccacg cgagcttcat ccgcgacgtc gtgaagaacg acgacctctg gaagaaattc
     1501 ggggtctagt ccggcctagg cgtgcccggg ctcggcctcg gccgccttgc gcgcggcgta
     1561 cacgccggcg aagtcgatcg ggtcgagcag gaagggcgga tagccgccat ccgaggtcac
     1621 gtcggcgatg atccggcgcg cgaaggggaa gagatagcgc ggacactcga tcagcagcac
     1681 cggctccatg tcctccggac cgacgccgcc aatctggaac acgccgccgt acatcagctc
     1741 gaccacgaag atcggaccgt cgtcgcgcac ggccttggcc gagagcttca ggtccacctc
     1801 gtagtagccg tcctcgcggc tgcgggcgtt catctcgacg ccgaggtcaa tctgcggctg
     1861 ggcggcgccg ccgcgcaggg cttccggcgc gcgcgggttt tcgaaggaca ggtcgcggat
     1921 gaactgggcg aggatgcgga tgccggggcc gctggcctgg gcgtcggcgc catccgagat
     1981 ggtttctggc gcgcctgcgc cggcgtcggt atcggtcatc gttcagctaa aatccgtgag
     2041 aaaactacga agggttcgcg tcttgttggg cggtcgggct atcatgcgcc ccctagcgat
     2101 gcaacgccgc cctgacgcgg gcgttgcttc ggtctatagt ggatgtcgcg cctagatgcg
     2161 gaaccctgac gtgcttgagc tgatcatctt cgccggcctc gcggccatcg tgctctacca
     2221 actctatgcg gtgctgggcc ggcgcgtggg ccgccagccg gaggattcgc cggccgtgcc
     2281 gaccaccagc gcagccatcg agcgcacgac cgaccagcca gcgaccgcct cggacgagga
     2341 cgtcgcgctg acgggcctcg ccgccgtgaa ggccagggac ccggccttcg acgtcagccg
     2401 cttcctgggc ggcgcgaaga gcgcctacga aatgatcgtc aaggccttcg ccgccggcga
     2461 ccgcaaccag ttgcgcagcc tactcgctcc gcccgtgatg gccggcttcg acaccgccat
     2521 cgccgcgcgc gaggcggaga gccgcaccga gaccgtggaa tttctgcaca gcccccgcgc
     2581 cgacctggaa aaggccgagg tggtgggcgc cgatctggcg cgggtgaccg tccgcttcct
     2641 ggccgaattc cgcagccgca ccaagggccc cgaaggcgag ggtgtcgagg accgtcgcac
     2701 cgccgagctc tggaccttcg agcgccacct gaagagccgc gatcccaacg ggctgctggc
     2761 ccacgtcgac gccgcggagg cctagagggc ccgtgcagc
//
LOCUS       DATAJL010000068         3636 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27028,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000068 DATAJL010000000
VERSION     DATAJL010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27028"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..415)
                     /locus_tag="VHN39_01210"
     CDS             complement(<1..415)
                     /locus_tag="VHN39_01210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase related protein"
                     /protein_id="HEX2814982.1"
                     /translation="MSDRPNGLTYAQAGVDIDAGNALVERIKPLAKSTRRPGAEASLG
                     GFGALFDLKAAGYDDPLLVTTTDGVGTKLKVAIETGIHDTVGIDLVAMCVNDLLAQGA
                     EPLMFLDYYATGKLDVEAAAAVVAGIAEGCRRAGCA"
     gene            496..1674
                     /gene="rnd"
                     /locus_tag="VHN39_01215"
     CDS             496..1674
                     /gene="rnd"
                     /locus_tag="VHN39_01215"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HEX2814983.1"
                     /translation="MTPITTTAELAVFCDKLKGQPFVAVDTEFMRETTYWPKLCLIQA
                     AAGSAEACIDPLAEGMDLEPFLEIMRDASILKVFHAARQDVEIFNNLNAMPVPLFDTQ
                     VAGMAAGFGEQIAYDALVRQILKIELDKSSRFTDWARRPLSDNQLTYALADVTHLASL
                     YPILQDRLSKEGRLGWVTDEMANLTDPAIYDVEPENAWKRLRPRKHTAKYMAVYKAVA
                     AWRERTAQTRDQPRGRILKDEAIDEVATQAPVDADQLDRLRSVPKGFSGSRFGPDLLS
                     AIREALKDPEAYAPVVERNRTAPSPAAGAVVELLKVLLKARSEEAGVASKLIATVSDL
                     EQIANDDECDNAALKGWRREAFGEDALKLKRGELALVLDGARVRVVEVRRAPKTAGAD
                     "
     gene            complement(2107..3105)
                     /locus_tag="VHN39_01220"
     CDS             complement(2107..3105)
                     /locus_tag="VHN39_01220"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2814984.1"
                     /translation="MQILMTKAASERVRGRVATIVPDAEIVTAVSADAYELAGQPIAV
                     DDINPEVVWLSLDSYASGTLGQLFGRLMKTEAPRWTQIMAAGIDNPMFRSIMEKGVRI
                     SKSSAQATPIAEYVVAHALSLQVPIGAQAALQAKREWKNTPYRELGRTRWLMFGFGNI
                     GHEIAKRIKSFGVDLTVVRRNLAPDDLADRVIGMPEMGGILPEADVVVLACALNDETR
                     NLCDDAFFRAMKPGAVLINIGRGGLVDENALKAGLDRDQPAHAVLDVFQTEPLPADSW
                     FWGHPKVRVSAHTSNSGDGNLGRGDELFLENLRRYLAKQPLLNEADPSEVGLPPRA"
     gene            complement(3113..>3636)
                     /locus_tag="VHN39_01225"
     CDS             complement(3113..>3636)
                     /locus_tag="VHN39_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEX2814985.1"
                     /translation="STELGPALEAWLSPAFEKLSPVFAERDPVLLAAACRLADLGARL
                     HPDHRADLAFEQVLRAPIAGMNHPERAFLASVAFARHTSSPNPPEADTVARVIAPDRR
                     QRARALGAAVRLGCDLSGRNPRLLERSSLAIKGERLTLTAATGWEDMLLGEQTAKRAQ
                     TLASALKLKLELG"
BASE COUNT          589 a         1191 c         1279 g          577 t
ORIGIN      
        1 gcgcgcagcc ggcccggcgg cagccctcgg cgatgccggc gaccacggcg gcggcggcct
       61 ccacgtcgag cttaccggtg gcgtagtaat cgaggaacat cagcggctct gcgccctggg
      121 ccagcaggtc gttgacgcac atggccacca ggtcgatgcc gaccgtgtcg tggatgccgg
      181 tctcgatagc gaccttcagc ttggtgccga ccccgtcggt ggtggtcacc agaagggggt
      241 cgtcatagcc cgcggccttg aggtcgaaga gcgcgccgaa cccgcccagc gaggcctcgg
      301 ctccgggcct gcgggtcgac ttggccagcg gcttgatgcg ctcgacgagc gcgttcccgg
      361 catcgatatc gacgccggcc tgcgcatagg tgaggccgtt gggccggtcg gacatcagtt
      421 ggctttcgac ataaaagtac gggtcgcgca aaccggcctt gcagactcgg ccccacgccg
      481 ggctatagct aatcgatgac gccgattacg accaccgcgg aactggcggt gttttgcgac
      541 aagctcaagg gccaaccgtt cgtcgccgtg gacaccgagt tcatgcgcga gacgacctat
      601 tggccgaagc tgtgcctgat acaggccgcc gccggcagcg cggaggcctg tatcgacccg
      661 ctggccgagg gcatggacct cgagcctttc ctcgaaatca tgcgggatgc gtcgatcctg
      721 aaggtgttcc acgcggcgcg gcaggacgtt gagatcttca acaacctgaa cgccatgccg
      781 gtgccgctgt tcgacaccca ggtcgccggc atggcggccg ggttcggcga gcagatcgcc
      841 tatgacgcgc tcgtccgcca gattctgaag atcgagctcg acaagtcctc gcgcttcacc
      901 gactgggcgc ggcggccctt gtcggacaac cagctcacct atgcgctggc cgacgtgact
      961 cacctggctt cgctctaccc gatcctgcag gatcggctgt cgaaggaagg ccgcctgggc
     1021 tgggtcaccg acgagatggc caacctcacc gacccggcga tctatgacgt cgagccggag
     1081 aacgcgtgga agcgtctgcg gccgcgcaag cacaccgcca aatacatggc cgtctacaag
     1141 gccgtcgccg cctggcgcga gcggaccgcc cagacccgcg atcagccgcg cgggcggatc
     1201 ctcaaggacg aggccatcga cgaggtcgcg acccaggcgc cggtcgacgc cgaccagctg
     1261 gaccggctgc gttccgtgcc caagggcttc tccggttcgc ggttcgggcc agacctcctg
     1321 tcggccatcc gcgaggccct gaaggacccg gaggcctatg ccccggtggt cgaacgcaac
     1381 cgcaccgccc cgtcgccggc cgcgggcgcc gtggtcgaac tgctgaaggt gctcctgaag
     1441 gcgcgctcag aggaagccgg cgtcgcctcc aagctcatcg ccacggtctc cgacctggag
     1501 cagatcgcca acgacgatga gtgcgacaac gccgccctca agggctggcg gcgcgaggcg
     1561 ttcggcgaag acgccctgaa actgaaacgc ggcgagctgg ccttggtgct cgatggcgcc
     1621 cgcgtgcggg tcgtcgaggt ccgccgggcc ccgaaaaccg ccggcgcgga ctgatcggcg
     1681 agttcgtctc acggttcctg aggacaagtg cgaggccttg atttggcacg ccctttgggc
     1741 ggcgtcccgg ggttctccac aggccgtcca ctggccgtgc ggaagtccgc gcacaggggt
     1801 gtctcgggcg gccattgcgc gccgccgggg tctgcgcaat tctgaatttg ccgagaggga
     1861 ctgaggcgcg gcggaccggg tgaccgggac gaaaagcgga caggaggctc ccgggggtaa
     1921 gatggctcag ggtaacccga accagacgat cccggggaca ccgaagacga tctgaagtcg
     1981 agctagagca atccagcgaa gcccaaagtt cccttcgacc ttgaacgctc agatccccca
     2041 acggatctgg ttcagagggc ggtgtttcgg gaaaccgagg cgccgccctc ttgctatggg
     2101 cgcttatcag gcgcggggcg gaagcccgac ctcgcttgga tcggcctcat tgagcagcgg
     2161 ctgcttggcc agatagcgcc gcaggttttc caggaacagt tcgtcgccgc ggccgaggtt
     2221 gccgtcgccg gagttggagg tatgggcgct gaccctgacc ttcgggtgac cccagaacca
     2281 gctgtcggcg gggagcggct cggtttggaa gacgtcgagc acggcgtggg ccggctggtc
     2341 gcggtcgaga ccggccttca gcgcgttctc gtccaccagc ccgcctcgac cgatgttgat
     2401 caggacggcg cccggtttca tcgcccggaa gaaggcgtcg tcgcacaggt tgcgggtctc
     2461 gtcgttcagc gcgcaggcca gcacgaccac gtcggcttcg ggcaggatcc cgcccatttc
     2521 cggcatgccg atcacccggt cagccagatc atcgggcgcc agattgcgcc ggaccaccgt
     2581 aagatccacg ccgaaggatt tgatccgctt ggcgatttcg tggccgatat tgccgaagcc
     2641 gaacatcagc caacgggtgc ggccaagctc tcggtagggg gtgtttttcc actcgcgctt
     2701 ggcctgcagc gccgcctggg cgccgatcgg gacctgcagg ctgagcgcgt gggcgaccac
     2761 atattcggcg atcggcgtgg cctgggcgct cgacttggag atccgcacgc ccttttccat
     2821 gatcgagcgg aacatcgggt tgtcgatgcc ggcggccatg atctgggtcc agcgcggcgc
     2881 ctcggtcttc atcagccggc cgaagagctg gccgagcgtg ccggaggcat agctgtcgag
     2941 gctgagccat acgacctccg ggttgatgtc gtcgacggcg atgggttgtc ccgcgagctc
     3001 ataggcgtcg gccgacaccg cagtgacgat ctcggcgtcc gggacgatgg tcgcgacccg
     3061 cccgcgcacg cgttcggagg ccgccttggt catcaggatc tgcatggaaa cgtcagccta
     3121 gctcgagttt cagtttcagg gccgaggcga gcgtctgggc gcgcttggcg gtctgttcgc
     3181 ccaatagcat gtcttcccag ccggtggcgg cggtgagcgt cagccgctcg cccttgatgg
     3241 ccaggctgga tctctccagc aggcgcgggt tgcggccgga aaggtcgcag ccgaggcgga
     3301 cagctgcgcc cagggcgcga gcccgctggc ggcggtccgg cgcgatcacg cgggccacgg
     3361 tgtcggcctc cggcggattg ggcgaggagg tgtggcgggc gaaggcgacg ctggccagaa
     3421 aggcgcgctc ggggtggttc atgccggcga tcggcgcgcg cagcacctgc tcgaacgcca
     3481 ggtccgcacg atggtcgggg tgcaggcgcg cgcccaggtc ggccagacgg caggcggcgg
     3541 ccagaagcac cgggtcgcgc tcggcgaaga cggggctgag cttctcgaag gccggcgaca
     3601 gccaggcctc cagggccggc cccagctccg tggaat
//
LOCUS       DATAJL010000069         4300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_90771,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000069 DATAJL010000000
VERSION     DATAJL010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4300
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90771"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            40..2661
                     /gene="pepN"
                     /locus_tag="VHN39_01230"
     CDS             40..2661
                     /gene="pepN"
                     /locus_tag="VHN39_01230"
                     /EC_number="3.4.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HEX2814986.1"
                     /translation="MRTDTPQAIRLADYRPPAFLVDEVHLTFDLKPNATRVKATLQVR
                     RNGDHSDPLKFNGERLKAVSVAIDGRVLTEAERTIDGEYLVIPNAPDAFTLETEVEID
                     PEANKALDGLYMSAGRFCTQCEAEGFRKITFWPDRPDVLSRFTVRIEADKAFHRLLSN
                     GNLMENGDLPGGRRYAVWNDPFLKPCYLFALVAGELDVLEDKLVTMTGRTVDLRIYVD
                     PGMAPRAAYAMDALKRSMKWDEATFGREYDLDLFMIVAVRDFNFGAMENKGLNIFNSS
                     LLLADPATATDMDFERIESVVAHEYFHNWTGDRITCRDWFQLCLKEGLTVFRDQSFSA
                     DQRGHAVQRIKDVKALRARQFSEDQGPLAHPVRPSSYMKIDNFYTATIYEKGAEVIRM
                     LKTLIGPDAFRAGMDLYFERWDGHATTVEEFIRCFAEVSDKDLGPFFAWYEQAGTPNV
                     SLTSRYNEAKRELELEIVQETAPTPGQPTKIPLPIPVTIGLLDGDGRTQAFVRDGVAV
                     DETVVVLDGARTRVTLTGVDEKPVVSALRGFSAPVKMTSDAEARDRYILLAGDPDLFN
                     RWEAGQELARALILNRATGQADEVGEERYAEAVGRALADQAADPAFKALLLILPSEPD
                     LALAMAPADPAAIHEAREALRMRLALHLDQELKRLHAGLQEAGEFSPDAAGAGRRALR
                     NAALDLMAANPRSEVGELARGHYEAAANMTDAIGGLAALTMIGGELYEQALADFYERW
                     KNEPLVIDKWFAVQARDPDEGALGRVMGLTAHPAFEAKNPNRLRALVSTFASFNPVRF
                     HDPSGAGYRFLADQILATDGFNPMTAARLVEPLGGWRRYKPELGALMKAELQRILEAP
                     GLSKNVFELVSRSLAED"
     gene            complement(2757..3137)
                     /locus_tag="VHN39_01235"
     CDS             complement(2757..3137)
                     /locus_tag="VHN39_01235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814987.1"
                     /translation="MLLDVLRAALAERLLNLSGLETSAMTAYPTSVLALARRPSGFIP
                     VLMSLTALAIVIASLATMGPVRPTDEGAAAHIFQLLLVGEVPVLVFFVVRWLPRDIRA
                     ALTILAIQAAAIGLAIFPVLYFGL"
     gene            complement(3245..3517)
                     /locus_tag="VHN39_01240"
     CDS             complement(3245..3517)
                     /locus_tag="VHN39_01240"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2814988.1"
                     /translation="MLVLASLAAGPKHGHAMLDDIEDMSGSRPGPGTLYGAIARLEKQ
                     GWIEALPVEDRRRPYRLTAAGRAAFVAKMSTLRRFVAAGEQRLGIA"
     gene            3749..>4300
                     /locus_tag="VHN39_01245"
     CDS             3749..>4300
                     /locus_tag="VHN39_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814989.1"
                     /translation="MTEAQEQALGIFADAVLKLALHIQQQALDAEDLDQKVRAAGAVH
                     RLGRGLRQTVALQAKLARDARTEAAKFQPEAEPPEELAPLDPQTVAVRRRRDWLTRGV
                     ERCVWNEYDREDEAAEFTGDSLLEDFHERLADITADPEAFLGRDPDTLMVELCKELGL
                     TPPEFHPPAPAVPPVTPRTSIANG"
BASE COUNT          743 a         1532 c         1383 g          642 t
ORIGIN      
        1 cgccttggcg ccgccaccac ctcgggccta gatgcggaca tgcgcacaga cacgccccag
       61 gccatccgcc tcgccgacta ccggccccct gctttcctcg tcgatgaggt ccacctcacc
      121 ttcgacctga aacccaacgc cacccgggtg aaggccacgc tgcaggtccg ccgcaacggc
      181 gaccactcag atcccctgaa gttcaacgga gagcggctga aggcggtctc cgtggccatc
      241 gacggccgtg tcctgacgga agccgagcgg accatcgacg gcgaatatct ggtcatcccg
      301 aacgcgccgg acgccttcac gctggagacc gaggtcgaga tcgacccgga ggccaacaag
      361 gcgctggatg ggctctacat gtccgccggc cgcttctgca cccagtgcga ggccgagggc
      421 ttccgcaaga tcaccttctg gccggaccgc cccgacgtgc tgtcgcgctt caccgttcgg
      481 atcgaggccg acaaggcgtt ccaccgcctg ctctccaacg gcaacctgat ggagaacggc
      541 gacctgccgg gcgggcgccg ctacgccgtc tggaacgacc cgttcctcaa gccctgctac
      601 ctcttcgccc tggtggccgg cgagctcgac gtgctggaag acaaactcgt caccatgact
      661 ggccgcaccg tcgacctgcg catctacgtc gaccccggca tggcgccgcg cgccgcctac
      721 gccatggatg cgctgaagcg ttcgatgaaa tgggacgagg cgaccttcgg gcgcgagtac
      781 gacctcgacc tcttcatgat cgtcgccgta cgcgatttca acttcggggc catggagaac
      841 aaggggctga acatcttcaa ctcctcgctc ctgctggccg acccggccac ggccaccgac
      901 atggacttcg agcgcatcga gagcgtcgtg gcccacgagt atttccacaa ctggaccggc
      961 gaccggatca cctgccgcga ctggttccag ctttgcctga aagagggcct gacggtcttc
     1021 cgcgatcaga gcttctccgc cgaccagcgc ggccacgccg tgcagcggat caaggacgtg
     1081 aaggcgctcc gcgcgcggca gttttccgag gatcagggcc cgctcgccca cccggtgcgg
     1141 ccgtcgagct atatgaagat cgacaacttc tacaccgcga ccatctacga gaagggcgcg
     1201 gaggtgatcc ggatgctgaa gaccctgatc gggcctgacg ccttccgggc cggcatggac
     1261 ctctatttcg agcgctggga cggccacgcc accaccgtcg aggaattcat ccgctgcttc
     1321 gccgaggtgt cggacaagga cctgggcccg ttcttcgcct ggtacgaaca ggccggcacg
     1381 cccaacgtca gcctcaccag ccgctacaac gaggccaagc gcgagctgga gctggagatc
     1441 gtccaggaga cggcgccgac gccgggccag cccaccaaga tcccgctgcc gatcccggtc
     1501 accatcggcc tcctggacgg cgacggccgc acccaggcct tcgtgcgcga tggcgtcgcg
     1561 gtggacgaga ccgtggtcgt gctcgacggc gcgcggacca gggtcacgct gaccggcgtc
     1621 gacgagaaac ccgtggtctc cgccctgcgc ggtttctccg ctccggtgaa gatgacctcc
     1681 gacgccgagg cccgcgaccg ctacatcctg ctggccggcg acccggacct gttcaaccgc
     1741 tgggaggctg gccaggaact ggcccgggcg ctgatcctga accgcgccac cggccaggcc
     1801 gacgaggtgg gcgaggaacg ctacgccgag gccgtgggcc gcgcgctggc cgaccaggcc
     1861 gcggaccccg ccttcaaggc gcttctgctg atcctgccgt cggagccgga cctggcgctg
     1921 gccatggcgc ccgccgatcc cgcggcgatc cacgaggccc gcgaggcgct gcgcatgcgc
     1981 cttgccctgc acctcgacca ggagctgaag cgcttgcacg cgggcctgca ggaggccggc
     2041 gaattttccc ccgacgccgc cggggccgga cgacgggcgc tgcgcaacgc ggcgctggac
     2101 ctgatggccg ccaacccgcg ctcggaagtg ggcgaactgg cccgcggcca ctacgaggcc
     2161 gccgccaaca tgaccgacgc catcggcggt ttggcggcgc tgaccatgat cggcggcgag
     2221 ctctacgagc aggcgctcgc cgacttctac gagcgctgga agaacgagcc cctggtcatc
     2281 gacaaatggt tcgccgtcca ggcccgcgac cccgacgagg gcgcgctcgg ccgggtcatg
     2341 ggcctgactg cccatcccgc cttcgaagcc aagaacccca accgcctgcg agccctggtc
     2401 tccaccttcg cgagcttcaa cccagtgcgg ttccacgacc cctcgggcgc cggctaccgg
     2461 ttcctcgccg accagatcct ggccaccgac ggcttcaacc cgatgaccgc ggccaggctc
     2521 gtggagccgc tcggcggctg gcggcgctac aagcctgagc ttggcgccct gatgaaggcc
     2581 gagctgcagc ggatcctgga ggcgcccggg ctttccaaga acgtcttcga actggtcagc
     2641 cggtcgctgg ccgaggatta gggcgggttc tcagatcttt cccggcccct aagcgtgtac
     2701 ggggccaatg accgctttcg acccatagcg gacgttcagc cgcccgaatg cgcgcgctaa
     2761 aggccgaagt acaataccgg gaaaatcgcc aaaccgatgg cggcggcctg gatggccagg
     2821 atcgtcagag cggctcgaat atccctgggg agccacctaa cgacaaagaa caccagcacc
     2881 gggacctcac ccacgaggag gagctgaaag atatgcgctg cggcgccttc gtcggtcggc
     2941 cgcaccggac ccatggtcgc tagggacgcg atcacgatgg caagggcggt gagggacatc
     3001 agaacgggaa tgaacccgct gggccgtctc gcgagggcga gcacgcttgt cggatacgca
     3061 gtcatggcgc tggtctccaa tccggacagg ttgagcaggc gttcagcgag ggcggcgcgg
     3121 agaacgtcca gcagcacgcg tggacctaaa gcctgagcct ccaggagatc tacgaactcg
     3181 gccccgaagc gcgcacgcca cactctggga tagagcctcg ccagccgctc cgcggtgctc
     3241 cgcctcatgc gatcccgagc ctctgctctc cggccgcgac aaagcggcgt aacgtcgaca
     3301 tcttggcgac aaaggccgcg cggccagccg cggtcaggcg atacggccgt cggcgatcct
     3361 ccactggcag cgcctcgatc cagccctgct tctccaggcg cgcgatggcg ccgtagaggg
     3421 tgccgggccc agggcggctg ccgctcatgt cctcgatgtc gtcgagcatc gcatggccgt
     3481 gcttcgggcc cgccgccaag ctggcgagca ccagcatggg cggatcggca tagtgacccg
     3541 ggtcgccccg ttttgatacg tcgtgcgtac tactcatgac gtagtactag catcaatatt
     3601 acgactgaca accccgtgtg ccacgaggcg gccaagtctt tccccccttc tcggaagctc
     3661 gggatgtccg cttgcggcgt gaatggcgga taaaacttga ctcccgcgct agatcaatgt
     3721 tctccttttg ttcatggacg cagcggtcat gacagaggct caggagcagg cgctcggcat
     3781 tttcgccgac gcggtcctga agcttgcgct gcacatccag cagcaggccc tcgacgccga
     3841 ggacctggac cagaaggtgc gggcggccgg cgcggtccat cgcctgggcc ggggcctgcg
     3901 gcagaccgtg gcgctgcagg ccaagcttgc gcgcgacgcc cgcacggagg cggcgaagtt
     3961 ccagcctgag gccgagccgc ccgaagagct ggccccgctc gatccgcaga ccgtcgccgt
     4021 acggcgtcgc cgcgactggc tgacgcgtgg cgtcgaacga tgcgtctgga acgagtacga
     4081 ccgcgaggac gaggccgccg agttcactgg cgactccctg ctggaagatt tccacgagcg
     4141 cctggccgat atcaccgccg accccgaggc tttcctcggg cgcgatcccg acaccttgat
     4201 ggtcgagctc tgcaaggagc tcggcctgac gccccccgaa ttccatccgc ccgcgccggc
     4261 ggtcccgccg gtgacgccgc ggacctccat cgccaacggc
//
LOCUS       DATAJL010000070         7940 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_39922,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000070 DATAJL010000000
VERSION     DATAJL010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7940
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39922"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VHN39_01250"
     CDS             <1..326
                     /locus_tag="VHN39_01250"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-hydroxy acid oxidase"
                     /protein_id="HEX2814990.1"
                     /translation="SNHGGRQLDGVRSSISALPKIAQAVGSDLEVYMDGGVRSGLDVL
                     KALSLGAKACFIGRAWAYALGAGGEAQVAKMLATLKSELAVAMILTGCANVRDAGRDL
                     LDLDG"
     gene            427..606
                     /locus_tag="VHN39_01255"
     CDS             427..606
                     /locus_tag="VHN39_01255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2814991.1"
                     /translation="MSERALAYSLSQVEDGWRWSVYDEQGVTVADGAHDSRDAAEAAV
                     ASTLRSPPGPTAAFG"
     gene            655..1356
                     /locus_tag="VHN39_01260"
     CDS             655..1356
                     /locus_tag="VHN39_01260"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX2814992.1"
                     /translation="MPTFLKHLLRRIESLALLWVIGAAGALWAFFNIAGEVGEGETMA
                     LDKHILLALRNPADLSDPIGSRSFEEAMRDVTALGGVTVMILVTIVSVLAFLAHRKRW
                     HAAVLAVTVLLADVSSELLKLLYDRPRPELVPHGSYVYSASFPSGHSTLSAATFLTLA
                     MLISSLEPNRATKVMVFVVAFMLVLAIGFSRVYLGVHWPSDVLAGWCLGGAWALAAWT
                     ALLRLGGRDKVKGAT"
     gene            1612..3900
                     /locus_tag="VHN39_01265"
     CDS             1612..3900
                     /locus_tag="VHN39_01265"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2814993.1"
                     /translation="MTGSALALVAGLGVSSALAAEAAAAAAEAGPVHIDPETPDFGRQ
                     VSELVVTGAGGATTTAPVKASLAATEPQSIIDRKAIDQFIPVTADYTQIVNLSPSVSG
                     TSFNGPGLGEAKSVLRGFQDGQYNVTYDGIPWGDANGPTHHSTSFFPSSTIGAVVVDR
                     GPGTASQLGVATFGGSINLFSPEVSDERGGSQSVTGGSWNTWMSVTKLSTGDIDQLNG
                     AHALFNFQELTTDGALTHSGAKAYNQLVRAVFPLIDSWKLTVLGTWNQTKVYTNDNTG
                     ATLLQTQLFGKNFGLTDDPKNPTYFGYNLVTKHTWFNYAKLTGDITPTLKLEDTVYSY
                     YYKNDTESALDPTLSPTDIINRKGLQITQTPGGKPTVNGDVPGYTKLNVYKIYGDILH
                     LDQELPFGIVKTGIWLETADTGPRARYDYDATLSFGQATKVVDYRQPVIAGVPQYLEY
                     LQNSGWHQYEPFIDFEWKVTPELTITPGIKYLNEKIFVNADVNQKSRQPFHDSKDFTK
                     TLYFATANYKVQENLSVYAQYATGFLVPDISVTQVVNPELSQLQPQESTNYQTGVVYH
                     GSRITLDADAYYIDFKNKLQTVSVPLAAGGSDTVNFNLGGAIYKGVEGTITFQAADRI
                     FLFANGSINSAKAQGAQTTIDGVAVTIAGGKQIAGAPKSTAAAGVYYQDENWTASVVD
                     KYTGLSWGAEGEPDAYKIPGYNSTDLTIVYRLDRYRIEGAVYNLLDSQKFTSIKPGKT
                     VPYDQYYFQPERNYQVSLKVNF"
     gene            3900..4634
                     /locus_tag="VHN39_01270"
     CDS             3900..4634
                     /locus_tag="VHN39_01270"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX2814994.1"
                     /translation="MRGAWASLGLTALLLAGGAGLAQAQPAPAKAPAVSKFLSPGDLD
                     PALLLPPPPKDDAPAAFEGRAELHRIAASTRTPERLAQAKRDDKIEDVRSIADVLGPA
                     FDLGRFPATAGLFADLRNEDSVAAKQAKAFFKRERPFLNDPELDVCDDRHDVKNSYPS
                     GHATMGFAAAAVLANLMPGNAQIILARASDYVESRLICGVHYRSDVEAGQVLGAVLVA
                     KLMTKPAFVAEVEAARAELTAAHVAP"
     gene            4724..5401
                     /locus_tag="VHN39_01275"
     CDS             4724..5401
                     /locus_tag="VHN39_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2814995.1"
                     /translation="MKLLIVEDDKEAAGYLKRALSEAGHAVDYAAAGRDGLMLAAGET
                     YDVIVLDRMLPEIDGLAILRTIRASGVKTPVLLLTALGGIDDRVEGLEAGGDDYLVKP
                     FAFAELLARVNALARRPPTQEMRTELVVADLKLDLLKRTVTRAGRRIDLQPREFQLLE
                     YLLRHAGRVVTRTMLLESVWDFHFDPKTNIVETHMSRLRGKVDRGHGCELIHTVRGAG
                     YVLREPD"
     gene            5563..6885
                     /locus_tag="VHN39_01280"
     CDS             5563..6885
                     /locus_tag="VHN39_01280"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2814996.1"
                     /translation="MFRSTSLRLATLYTTVFALSVVVLGIITLFSTRQALSQQFDTRI
                     RAESGALVQEYHSEGLQGVIDAVHERDGTPGSLDFGLQGPGGQPLAGRLATTRAAMGW
                     SKLQRAEHGHGEAVRVFAVALPDGYKLLVGDEEERVEALDGAVVRGFGLAFIGVIVLG
                     VLGGYALSRDVHRRLAAISGTAEAIIDGDLARRVPVRGSDDDLDRLALTFNRMLDRIA
                     ALMESLKQVSNDIAHDMRTPLTRLRQKLEAGLASPKDQGPALEGVLSDLDSILDTFAA
                     LLRIAQIEGGARRAAFRPCELAALAQTVTDAFAPSAEDMHQSLTLVVEAPASVDGDAE
                     LLTQMLVNLVENALRHAGPQAKITVRVARVGRAPVLSVTDDGPGVPEAEGERLFDRFY
                     RLERSRSTPGSGLGLALVAAVARLHGAEVALLPARPGLEARVTFPETA"
     gene            6974..>7940
                     /locus_tag="VHN39_01285"
     CDS             6974..>7940
                     /locus_tag="VHN39_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEX2814997.1"
                     /translation="MTVSRIAALCVGLCASAAGAQAAGAGYHVLDRVAGPDGGWDYVR
                     VDTANNKVLVAHGGSVVALDLASKAVTPGLAPGSILHDPLPVNGGAEVLVTNGGTAEA
                     VFYNAKTWAEVARVKTGVGPDAAAFDAHSGLVLVMDHRGGDVTLIDPKTHKAVGSITI
                     GGDLEAAAVDGAGRAYVNVENKNEIVVLDIAKRAVVTRYPLAGCDGPTGLAWDAADKQ
                     LIAACDGSTVVVDAGSGKVVATLDTGKGADGVAFDPRQKLAFVPAGQAGTLSIVAIGK
                     GKASIIETVKTQVSARTIAVDPRDGRLYLPAAEYGPKPAVGRAPMI"
BASE COUNT         1343 a         2696 c         2646 g         1255 t
ORIGIN      
        1 tgtcgaacca tggcggacgc cagcttgacg gcgtgcgttc gtcaatctcc gccctgccaa
       61 aaatcgccca ggcggtgggc tcggaccttg aggtctatat ggacggcggt gtccgctcgg
      121 ggctggacgt gctgaaggcg ctctcgttgg gcgccaaggc ctgtttcatt ggccgcgcct
      181 gggcctacgc gctgggcgcc ggcggcgagg cccaggtggc caagatgctg gcgacgctga
      241 aatccgagct ggcggtggcg atgatcctga ccggctgcgc caacgtccgc gacgccggcc
      301 gcgacctgct cgacctcgac ggctgagcgc ggtcacggca cggtgacctc gcctgctgcg
      361 ccgcagcgaa acctattgcg gcgtgctgtg ttgaaccatc gtcaggtggc gagggactaa
      421 gagggcatgt cagaacgcgc gttggcctat tcgctcagtc aggtcgaaga cggctggcgc
      481 tggagcgtct acgacgagca gggcgtcacg gttgcggacg gggcgcacga cagccgcgac
      541 gccgccgagg cggccgtcgc ctccaccttg cggtcgccgc ccggaccgac cgcggcattt
      601 ggctagaccg ccgcggctga tagcctctcg tgaggttcga gaccccggag gcttatgccc
      661 acgttcctga agcacctgct gcgccgcatc gaaagcctcg ccctgctctg ggtgattggg
      721 gcggccggcg cgctctgggc tttcttcaac atcgccggcg aggtcggcga gggcgagacc
      781 atggcgctgg acaagcacat cctgctggcg ctccgcaacc ccgccgatct ctccgatccc
      841 ataggctcgc gctcattcga ggaggcgatg cgcgacgtta ccgcgctggg cggcgtgacg
      901 gtgatgatcc tggttaccat cgtgagcgtg ctggccttcc tggcccatcg caagcgctgg
      961 cacgccgccg tgctggcggt caccgtgctg ctggcggacg tctcaagcga gcttctgaaa
     1021 ctcctctacg accggccgcg cccggagctc gtgccacacg gcagctacgt ctattcggcg
     1081 agcttcccga gcggccattc caccctttcg gcggctactt tcctgacgct cgccatgctg
     1141 atctccagcc tggagccgaa ccgcgccacc aaggtcatgg tcttcgttgt ggcgttcatg
     1201 ctggtgctcg cgatcggctt cagccgcgtc tatctgggcg tccattggcc gagcgacgtc
     1261 ctggctggct ggtgcctggg cggggcctgg gccctggccg cctggaccgc gctcctgagg
     1321 ctgggcggcc gtgacaaggt caagggcgca acctaagccg gcgcggccag ccaaaatgag
     1381 cgtcaaacga gacggcgaga tgacacaaat attgataatt cccaacctaa ggaactggca
     1441 caaaacctag cagaaactgt catgaaacct tgatttgtga cggctgcaag actgcgctct
     1501 tcaacccctc aagcaaaacg gggcgtcgga tcggcttttg gccgggcgat gatttgaggg
     1561 tgggtcatgc gatcatcatt tgtgcgtgca cggacttgtc gtgctctttg gttgacaggt
     1621 tcggcgctgg cgctggtcgc cggcctgggg gtgtcctcgg ccctggctgc ggaagccgcg
     1681 gcggcggcgg ccgaggccgg gccggtgcac atcgatccgg aaacgcccga cttcggccgc
     1741 caggtcagcg agctggtggt caccggcgcc ggcggggcga ccaccacggc gccggtcaag
     1801 gcctcgctgg cggccaccga gccgcagtcg atcatcgacc gtaaggccat cgaccagttc
     1861 attcccgtga ccgcggacta cacccagatc gtcaacctct cgcccagcgt ctcggggacc
     1921 tcgttcaacg gcccgggcct cggcgaagcc aagtcggtgc tgcgcggctt ccaggacggc
     1981 cagtacaacg tcacctacga cggcattccg tggggtgacg ccaatgggcc aacacaccat
     2041 tcgacgtcct tcttcccgtc gtccaccatc ggggcggtgg tggtggaccg cggccctggg
     2101 acagccagcc agctcggcgt ggcgaccttc ggcgggtcga tcaacctgtt ctcgcctgag
     2161 gtcagcgacg agcgcggcgg ctcccagtcg gtgaccggcg ggtcatggaa cacctggatg
     2221 tcggtgacca agctttcgac tggcgacatc gaccagttga acggcgcgca cgccctgttc
     2281 aatttccagg agctgaccac ggatggcgcg ctcacccact ccggggccaa ggcctataac
     2341 cagctggtcc gcgcggtctt cccgctgatc gacagctgga agctgacggt gctggggacc
     2401 tggaaccaga ccaaggtcta taccaatgac aacaccgggg cgacgctgct gcagacccag
     2461 ttgttcggca agaacttcgg cctgaccgac gacccgaaga acccgacgta cttcggctac
     2521 aacctggtca ccaaacacac ctggttcaac tacgccaagc tgaccgggga catcacgccg
     2581 accctcaagc tcgaggacac ggtctattcc tactactaca agaacgacac ggaatcggcg
     2641 ctcgacccga cgctgtcgcc caccgacatc atcaacagga agggcctgca gatcacccag
     2701 acaccgggcg gcaagccgac ggtgaacggc gacgtacccg gctacaccaa gctcaacgtc
     2761 tacaagatct acggcgacat cctgcacctc gaccaggaac tacccttcgg catcgtcaag
     2821 accggcatct ggctggagac cgccgacacc ggcccgcgcg cccgctacga ctacgacgcg
     2881 acgctgagct tcggccaggc gacgaaggtg gtggactacc gccagccggt aatcgccggc
     2941 gtgcctcagt acctggagta cctgcagaac tcaggctggc atcagtacga gcccttcatc
     3001 gacttcgagt ggaaggtgac gccggagctc accatcacgc ccggcatcaa atacctgaac
     3061 gaaaagatct tcgtgaacgc cgacgtcaat cagaaatcac gccagccgtt ccacgactcc
     3121 aaggacttca ccaagacgct ctatttcgcc acggccaact acaaggttca ggagaacctg
     3181 tcggtctacg cccagtatgc gaccggcttc ctggtgccgg acatcagcgt cacccaggtg
     3241 gtcaatcccg agctcagcca gctgcagccg caggagtcga cgaactatca gacgggcgtc
     3301 gtctaccacg gctcgcggat cacgctggac gccgatgcct actacatcga cttcaagaac
     3361 aagctgcaga cggtctcggt cccgttggcg gcgggcggca gcgacacggt caacttcaat
     3421 ctcggcggcg cgatctacaa gggcgtcgag gggacgatca ccttccaggc cgccgaccgc
     3481 atcttcctgt tcgccaacgg ctcgatcaac tcggcaaagg ctcaaggggc ccagacgacg
     3541 atcgacggag tggcggtgac catcgcgggc ggcaaacaga tcgccggcgc gccgaaatcc
     3601 acggccgcgg cgggcgtcta ctaccaggac gaaaactgga ccgcctcggt ggtcgacaaa
     3661 tataccggcc tcagctgggg cgccgagggc gagccggacg cctacaagat ccctggctac
     3721 aactcgacgg acctgacgat cgtctaccgg ctcgaccgct accggattga gggcgcggtc
     3781 tacaacctgc tcgacagcca gaaattcacc tcgatcaagc ctggcaagac ggtgccctac
     3841 gaccagtact acttccagcc ggagcggaat tatcaggtgt cgctgaaggt gaatttctga
     3901 tgcggggcgc ctgggcttcg cttggactga cagccctcct gctggccggt ggcgcgggtc
     3961 tagcccaggc ccagccggcg cctgccaagg ccccggcggt gtcgaagttc ctcagccccg
     4021 gcgacctcga tccggccctg ctgctgccgc cgccgccgaa ggatgacgcg ccggccgcat
     4081 tcgaagggcg cgcggagttg caccggatcg ccgcgtcaac gcggacgccg gagcgcctgg
     4141 cgcaggccaa acgcgacgac aagatcgagg acgtccgctc gatcgccgac gtcctgggcc
     4201 ccgccttcga cctcggacgg ttcccggcga cggccgggct gttcgccgac ctgcgcaatg
     4261 aggacagcgt cgcggccaag caggccaagg ccttcttcaa acgcgagcgg cccttcctca
     4321 acgaccccga gctcgacgtc tgcgacgacc gtcacgacgt gaagaacagc tatcccagcg
     4381 gccacgccac catgggcttc gcagccgccg cggtgctggc caacctgatg cccggcaacg
     4441 cccagatcat actggcgcgg gcctcggact acgtggagag ccggctcatc tgcggcgtgc
     4501 attaccgcag cgacgtcgaa gccggtcagg tgctgggcgc cgtcctggtc gccaagctca
     4561 tgaccaagcc cgccttcgtc gccgaggtgg aggcggcccg cgccgagctg acggccgccc
     4621 acgtcgcccc ctgagagttg agcccctaag gttcgggctt cattgggaat tggtattcgt
     4681 agcggccctt tccgcagggc cccgttcggg gcagggtcgg gccatgaagc tgctgatcgt
     4741 cgaggacgac aaggaagccg ccggctacct caagcgcgcg ctctccgagg cgggccacgc
     4801 cgtcgactat gcggcggccg ggcgcgacgg cctgatgctg gcggccggcg agacctatga
     4861 cgtgatcgtc ctggaccgga tgttgccgga gatcgacggc ctggcgatcc tgcgcaccat
     4921 ccgcgcctcg ggcgtcaaga cgccggtgct gctgctgact gccctgggcg gcattgatga
     4981 ccgggtggag ggcctggagg ccggcggcga cgactatctg gtcaagcctt tcgccttcgc
     5041 cgagctgttg gcgcgggtca acgcgctcgc gcgccggccg ccgacccagg agatgcggac
     5101 cgaactggtc gtcgccgacc tgaagctcga cctccttaaa cgcaccgtga cccgggcggg
     5161 gcggcgcatc gacctgcagc ccagggaatt ccagctgctg gaataccttc tgcgccatgc
     5221 cggccgcgtg gtgacgcgca ccatgcttct ggagagcgtc tgggacttcc acttcgaccc
     5281 caagaccaac atcgtcgaga cccacatgag ccgcctgcgc ggcaaggtgg accgcggcca
     5341 tggctgcgag ctgatccaca cggtgcgcgg agccggctac gtgctgcgcg agcccgacta
     5401 gtgtgctgga tctgaagttc gcccgatggt tggatggagc gccgtgcgat cttcagatcc
     5461 aagaagcaca ctagaaacag gagcttgcta gtgtcctcat cgattccgaa gctcgtccga
     5521 gcctgccgca agcgcgtgcg aacttcggaa tcgggacact agatgttccg ctccaccagc
     5581 ctcaggttgg ccacgctcta caccaccgtc ttcgcccttt cggtggtcgt gctggggatc
     5641 atcaccctct tcagcacccg ccaggccctg tcgcagcagt tcgacacgcg catacgcgcc
     5701 gagtccggcg ctctggttca ggaatatcat tccgagggct tgcagggggt gatcgacgcc
     5761 gtccatgagc gcgacgggac gcccgggtcg ctcgacttcg gcctgcaggg gccaggcggt
     5821 caaccgctgg ccggccggct ggcgacaacc cgggccgcca tgggctggtc gaagttgcag
     5881 cgcgccgaac acggccatgg cgaggcggtc cgtgtgttcg ccgtcgccct gccggacggc
     5941 tacaagctgt tggtcggcga cgaggaggag cgggtcgagg cgctggatgg ggcggtggtc
     6001 cgcggcttcg gcctggcgtt catcggcgtc atcgtcctgg gcgtgctggg cggctacgcc
     6061 ctgagccgcg acgtgcaccg ccggctggcg gcgatctccg gcacggcgga ggcgatcatc
     6121 gacggcgacc tggcgcgccg ggtgccggtg cgcggctccg atgacgacct cgaccgcctc
     6181 gcgctgacct tcaaccggat gctggaccgc atcgcggccc tgatggagag cctgaagcag
     6241 gtctccaacg acatcgccca cgacatgcgc acgccgctga cccgccttcg ccagaaactg
     6301 gaagcgggcc tcgcgtcgcc caaggaccag gggccggcgc tggagggcgt gctgagcgac
     6361 ctggactcca tcctcgacac cttcgcggcc ttgctccgca tcgcccagat cgagggcggc
     6421 gcccggcgcg cggccttccg gccctgcgag ctggcggcgc tcgcccaaac cgtcaccgac
     6481 gccttcgcgc cctcggcgga ggacatgcat cagtcgctga ccctggtcgt cgaggcgccg
     6541 gcctcggtcg acggcgacgc cgagctcctg acccagatgc tggtcaatct ggtggagaac
     6601 gccctgcgcc acgccggccc gcaggcgaag atcaccgtcc gggtggcgcg ggtgggccgc
     6661 gcgccggtgc tgtcggtgac tgacgacgga cccggcgtgc cggaggccga gggcgagcgc
     6721 ctgttcgacc gcttctaccg cctggagcgg agccgttcga cgccgggaag cgggcttggc
     6781 ctggccctgg tggccgcggt cgcccggctg catggcgccg aggtcgcgct gctgcccgcc
     6841 agaccggggc tggaggcgcg tgtcaccttc cccgaaacag cgtaggcagg gaacaacatt
     6901 ggggttcgac aatctggccg ccatcgggcg gtcagccgcc tgggtttagc cagaggcaaa
     6961 agggagacac gtcatgaccg tttcacgtat cgccgcgctt tgcgtcggcc tttgcgcctc
     7021 ggccgccgga gctcaggccg ccggcgccgg ctaccatgtc ctcgaccgcg tcgccggtcc
     7081 ggacggaggg tgggactacg tccgcgtgga tacggcgaac aacaaggtgc tggtggcgca
     7141 cggcggctcg gtggtggcgc tggacctcgc gagcaaggcg gtgacgccgg gcctggcccc
     7201 gggctcgatc ctgcacgatc cgctgccggt caacggcggc gccgaggtcc tggtgaccaa
     7261 cggcgggacg gccgaagccg tgttctacaa cgccaagacc tgggccgagg tcgcccgcgt
     7321 caagaccggc gtcggtccgg acgccgcggc cttcgacgcc cactcaggcc tggtcctggt
     7381 gatggatcac cggggcgggg acgtcaccct gatcgatccc aagacgcaca aggcggtggg
     7441 ctcgatcacg atcggcgggg acctggaagc tgcagcggtg gatggcgcgg gccgcgccta
     7501 cgtcaacgtc gagaacaaga acgagatcgt cgtgctggac atcgccaagc gcgcggtggt
     7561 cacgcgctac ccgctggccg gctgcgatgg tccgacgggc ctagcttggg acgccgccga
     7621 caagcagctg attgcggcct gcgacggctc gaccgtcgtg gtcgatgccg gatccggcaa
     7681 ggtcgtggcg acgctggaca cgggcaaggg cgccgacggc gtggcgttcg atcccaggca
     7741 gaagctggcc ttcgtgccgg cggggcaggc cggaacgctt tcgatcgtcg cgatcggcaa
     7801 gggcaaggcc agcatcatcg agacggtgaa gacccaggtc agcgcccgca ccatcgccgt
     7861 cgacccgcgt gacggccgcc tctatctgcc cgccgcggag tacggcccga agccggcggt
     7921 cggccgtgcg ccgatgatcc
//
LOCUS       DATAJL010000071         1913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64908,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000071 DATAJL010000000
VERSION     DATAJL010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64908"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VHN39_01290"
     CDS             <1..213
                     /locus_tag="VHN39_01290"
                     /inference="COORDINATES: protein motif:HMM:NF026214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl sulfatase C-terminal domain-containing
                     protein"
                     /protein_id="HEX2814998.1"
                     /translation="VLHHAHLGTLGEGGPEVALTRATLIGLVMGETTLAAALADGTAA
                     GAGASVLGQLLPLLDRFDFWFEIVAP"
     gene            255..494
                     /locus_tag="VHN39_01295"
     CDS             255..494
                     /locus_tag="VHN39_01295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HEX2814999.1"
                     /translation="MSHVTYKIVEHDGGWAYTVDGSFSETFRTHDAALKSARRAAGEQ
                     RVSGDTHGIVYEDASGEIREELSDGHDRPRTDVTG"
     gene            complement(491..1120)
                     /locus_tag="VHN39_01300"
     CDS             complement(491..1120)
                     /locus_tag="VHN39_01300"
                     /inference="COORDINATES: protein motif:HMM:NF012273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2815000.1"
                     /translation="MDAVVIHTHPLSPYGWTAALIAAEKAIPYTLAPAHTDRPEYAQL
                     HPFRKMPVLRHGDLIVYETLAIAHYLDRAFAGPALQPADFLSQTEMLRWISVVNSYAF
                     PVMNGLVKQRVARFFEKDAEALPDLTAPLAEQVALIEATLRRHPFLVGERMTLADAFL
                     FPLLHTVSLIPEGAAALAGAPATTEWLERIRLRPSFAATDPMAPSQAAA"
     gene            complement(1184..>1913)
                     /locus_tag="VHN39_01305"
     CDS             complement(1184..>1913)
                     /locus_tag="VHN39_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815001.1"
                     /translation="AVAGLFGGGLACLGVYYLHARNNPHAILDLSIFRIPTFQASVLG
                     GAFFRLVPGATPFLLAMLLQVGFGMTAFAAGLMTFISAVGALVMKTTAPPILRRFGFR
                     TVLIANGVICSATFMVYAFFRIDTPHWLIMVALAVGDFFRSLQFTSLNGMAYADLDQS
                     QMSRGTTTASMAQQFIQSVAIGLAATLLHFLMVARGETHLTGATVAPAFAIIGAVTLV
                     SLFWFLRLPANAGDEMNNRARAIG"
BASE COUNT          353 a          585 c          697 g          278 t
ORIGIN      
        1 gtgctgcatc acgcccacct tgggactctg ggcgagggcg ggcccgaggt tgcgttgacg
       61 cgggccacgc tgatcgggct ggtgatgggc gagacgacgc tggcggccgc gctggccgat
      121 gggacggcag ctggagcggg cgcgagcgtg ctgggtcaac tgctaccgct gctcgaccgc
      181 ttcgatttct ggttcgagat tgtcgcgccc tgacggaagg cccatgtaga ggcttgcccc
      241 accggagaca tcaaatgagc cacgtcacct acaagatcgt cgagcatgac ggcggctggg
      301 cctacacggt ggacggctcg ttctccgaga ccttccggac ccatgacgcg gccttgaagt
      361 ccgcgcggcg ggcggcgggc gagcagaggg tcagtggcga cacccacggc atcgtttacg
      421 aagacgcctc gggcgaaatt cgcgaggaac tctcggacgg ccacgaccgg ccgcggaccg
      481 acgtgacggg ctaggccgcc gcctgacttg gggccatcgg atcggttgca gcgaaactcg
      541 ggcgcaggcg aatccgctcg agccattcgg tcgttgcggg cgcaccggcc agggcggcgg
      601 cgccctccgg aatcaggctg acggtgtgca ggagcggaaa caggaacgca tccgccagcg
      661 tcatgcgttc gccgaccagg aagggatgcc gcctgagcgt ggcctcgatc aaggccacct
      721 gttcggcaag cggcgccgtg aggtccggca gcgcctccgc atccttctca aagaagcgcg
      781 ccacgcgctg tttcaccaag ccgttcatga ccggaaaagc gtagctgttg accacgctga
      841 tccaacgcaa catctcggtc tggctgagga agtcggcggg ctgcagggcc gggccggcga
      901 aggcgcgatc gagatagtga gcgatggcga gcgtctcgta gacgatcaga tctccgtgcc
      961 gcagaaccgg catcttccgg aacggatgca gttgcgcata ctcgggccgg tcggtgtgcg
     1021 cgggagccag agtatagggg atcgccttct cggcggcgat gagcgccgcc gtccagccgt
     1081 aggggctaag cggatgggta tggatgacga cggcgtccat cggggacctc acaggacaag
     1141 gtccagcctg cgcccaggcg cgcggccacg gccttgacct cgatcaaccg attgcgcgtg
     1201 cgcggttgtt catctcgtcg ccggcgttgg cggggagacg gagaaaccag aacagcgaga
     1261 cgagcgtcac tgccccgatg atcgcgaagg ccggcgccac cgtggcgccg gtgaggtggg
     1321 tctcgcctcg cgccaccatc aggaaatgca gcagggtggc ggctaggcca atggccaccg
     1381 actggatgaa ctgttgcgcc atggaggcgg tggtggtgcc ccggctcatc tggctctggt
     1441 caaggtcggc gtaggccatg ccgttcaggc tggtgaactg cagggaccgg aaaaagtcgc
     1501 ccaccgccag cgccaccatg atcagccaat gcggggtgtc gatcctgaag aaggcgtaga
     1561 ccatgaaggt cgcggagcag atgacgccgt tggcgatcag caccgtgcgg aagccgaagc
     1621 ggcgcaggat cggcggcgcc gtggtcttca tgaccagggc tcccaccgcg gagatgaagg
     1681 tcatcaggcc ggcggcgaag gcggtcatgc cgaatcccac ctgcagcagc atggccaaga
     1741 ggaacggcgt cgcgccgggc accaggcgga agaaggcgcc gcccagaacc gaggcctgaa
     1801 aggtcgggat cctgaagatc gagaggtcca ggatggcgtg cgggttgttg cgggcgtgca
     1861 ggtagtagac gccgaggcag gccaggccgc cgccgaaaag gcccgccacc gcc
//
LOCUS       DATAJL010000072         2691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52653,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000072 DATAJL010000000
VERSION     DATAJL010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52653"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..883
                     /gene="epmA"
                     /locus_tag="VHN39_01310"
     CDS             <1..883
                     /gene="epmA"
                     /locus_tag="VHN39_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EF-P lysine aminoacylase EpmA"
                     /protein_id="HEX2815002.1"
                     /translation="LHAFATEAIGIAGERAPLYLRTSPEFTAKKLLAAGETRTFELAR
                     VWRNRERGPLHHPEFTLLEWYRVGVAYETLIADCASLLAVAAEAAGTSVLSYRDCSID
                     PLEAPERVTLAEAFQHFAKIDLLATVQPDGATDRAALASVAVGQGIRVADDDTWADVF
                     SRILVEKVEPHLGRDRATVLCEYPVSEAALARPKASDPRVAERFELYACGVELANCFG
                     ELIDPAEQRRRFEAEMAEKARVYGERYPLDEDFLAALAQMPEASGGALGLDRLVMLGT
                     GARHIEQVLWAPVAQTP"
     gene            932..1984
                     /locus_tag="VHN39_01315"
     CDS             932..1984
                     /locus_tag="VHN39_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-2,3-aminomutase-like protein"
                     /protein_id="HEX2815003.1"
                     /translation="MSASKTLRNPKAVAAAGLIAPERVAALERVAAQYAVAITPAMAE
                     LIGTTDDPIARQFVPSEAELHALPEESADPVGDFAHSPVEGIVHRYPDRCLLKVNHAC
                     AVYCRFCFRREMVGPEGLRPLSPQALDAAMAYIAARPDIWEVIVTGGDPFILSPRRLR
                     DVMRRLAAIDHVKIVRFHTRVPAVAPEMVTDELVAALKTPGKTVYVALHANHARELTP
                     AARAACAKIVDAGIPLLGQTVLLAGVNDDPETLTALMRAFVETRIKPYYLHHADLAPG
                     TSHLRTSIEDGQALMRALRGTVSGLCQPTYILDIPGGHGKVPVGPEYLSDGCVLDPAG
                     RAHAYPPPPSANNGGA"
     gene            1984..>2691
                     /locus_tag="VHN39_01320"
     CDS             1984..>2691
                     /locus_tag="VHN39_01320"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HEX2815004.1"
                     /translation="MAWTGRYDEAEPQRVNKWLGQSGVCSRREAEGFIERGLISIDGE
                     TVTDTGRKILPGQTLTLSDSGGPAALSVVLHKPMGIVSAQPEPGQTPAVRLLTRAALI
                     GESPSIPDRDTRLAPLGRLDMDSRGLLLLSDDGVLAKAIIGPESDLEKEYLVRVTGKI
                     TPEKIARLCHGLTMDGRQLKPAKVSVVEGQQLRFILREGRNRQIRRMCELVGMHVMDL
                     VRIRIGSLELGDLAEGKW"
BASE COUNT          402 a         1000 c          899 g          390 t
ORIGIN      
        1 cctgcacgcc ttcgccaccg aggcgatcgg catcgccggc gagcgggcgc cgctctatct
       61 gcgcacctcg ccggagttca ccgccaagaa gctgctggcc gccggcgaga cccggacctt
      121 cgaactggcc cgcgtctggc gcaaccgcga gcgcggtccg ctgcaccatc cggagttcac
      181 gctgctcgag tggtaccggg tgggcgttgc ctacgagacc ctgatcgccg actgcgcgag
      241 cctgctggcc gtcgccgccg aggccgccgg gacgagcgtg ctcagctatc gggattgcag
      301 catcgatccc ctggaggcgc cggagcgggt gacgctcgcc gaagccttcc agcatttcgc
      361 gaagatcgac ctgctggcga ccgttcagcc cgacggcgcg accgatcgcg ccgccctggc
      421 ttcggtcgcc gtggggcagg ggatccgcgt cgccgatgac gacacctggg ccgatgtgtt
      481 cagccggatc ctggtggaga aggtcgaacc gcacctcggc cgcgaccggg cgaccgtcct
      541 ttgcgaatac cccgtcagcg aggcggcgct ggcccgcccc aaggcgtctg atccccgcgt
      601 ggccgagcgt ttcgaactct atgcctgcgg cgtcgagctc gccaactgct tcggcgaact
      661 gatcgatccg gccgaacaac gccgccgctt cgaggccgag atggccgaaa aggcccgtgt
      721 ctacggcgaa cgctatcccc tcgacgagga cttcctggcc gcgctggccc agatgccgga
      781 ggccagcggc ggggcgctcg gcctcgaccg cctggtgatg ctgggcaccg gcgcgcgcca
      841 catcgagcag gtgctctggg ccccggtggc gcagacgccc tgacgccccc gcgttgctcg
      901 cgcgcggtcc ttgcgccata ccgccagccg catgagcgcc tccaaaaccc tccgcaaccc
      961 caaggccgtg gccgccgccg gcctgatcgc gcctgagcgc gtggccgcgc tggagcgggt
     1021 cgcggcgcag tacgcggtgg cgatcacgcc ggccatggct gagctgatcg ggaccaccga
     1081 cgacccgatc gcccggcagt tcgtccccag cgaggcggag cttcacgccc tgccggagga
     1141 gtccgccgac ccagtgggcg acttcgccca ttcgccggtg gaagggattg tccaccgcta
     1201 tcccgaccgc tgcctgctga aggtcaacca cgcctgcgcg gtctactgcc ggttctgttt
     1261 ccgtcgcgag atggtgggcc ccgaagggct gcggccgctg tcgccgcagg cgctggacgc
     1321 cgccatggcc tacatcgccg cgcggccgga catctgggag gtgatcgtca ccggcggcga
     1381 ccccttcatc ctgtcgccgc gccgtctgcg cgacgtgatg cgccggctgg ccgcgatcga
     1441 tcacgtaaag atcgtccgct tccacacccg cgtgcccgcc gtggcgccgg agatggtcac
     1501 tgacgagctg gtcgccgcgc tcaagacgcc cggaaagacc gtctacgtcg ccctgcacgc
     1561 caaccacgcc cgagagctga caccggccgc ccgcgccgcc tgcgcgaaga tcgtcgacgc
     1621 cggtattccg ctgctgggcc agacggtgct gttggccggg gtcaacgacg accccgagac
     1681 gctgaccgcc ctgatgcgcg ccttcgtcga gacccggatc aagccctact acctgcacca
     1741 cgccgacctc gcgcctggca cctcgcacct gcgcacctcg atcgaggacg gccaggccct
     1801 catgcgggcc ctgcgcggga cggtctcagg tctctgccag ccgacctaca tcctcgacat
     1861 ccccggcggc cacggaaagg tcccggtggg gccggaatac ctctctgacg gctgcgtcct
     1921 ggatccggcc ggccgggccc atgcctatcc gccgcccccg tctgcaaaca acggcggcgc
     1981 ctgatggcct ggaccggacg ttacgacgag gccgagccgc aacgggtcaa caaatggctg
     2041 ggccagagcg gcgtctgttc gcgccgcgag gccgagggtt tcatcgagcg cggtctgatc
     2101 tccatcgacg gcgagacggt caccgacacc ggccgcaaga tcctgcctgg ccagaccctg
     2161 acactctccg acagcggcgg gcccgcggcg ctcagcgtcg ttctgcacaa acctatgggc
     2221 attgtctccg cccagccgga acccggccag accccggcgg tgcgcctgct gacccgggcc
     2281 gccctgatcg gcgagagccc ctcgatcccg gaccgcgaca cccgtctcgc gccgctcggc
     2341 cggctggaca tggatagtcg cggcctgctg ctgctctccg acgacggcgt gctggccaag
     2401 gcgatcatcg ggccggagtc ggacctggag aaggagtacc tggtccgggt gaccggcaag
     2461 atcacgccgg agaagatcgc acgcctctgc cacggcctga ccatggatgg ccgccagctg
     2521 aaaccggcga aggtcagcgt cgtcgagggc cagcagctgc gcttcatcct cagggaaggc
     2581 cgcaaccgcc agatccgccg gatgtgcgag ctggtgggca tgcacgtcat ggacctggtc
     2641 cgcatccgca tcggctcgct tgagctcggc gacctggccg agggcaagtg g
//
LOCUS       DATAJL010000073         1980 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52677,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000073 DATAJL010000000
VERSION     DATAJL010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1980
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52677"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..545)
                     /locus_tag="VHN39_01325"
     CDS             complement(123..545)
                     /locus_tag="VHN39_01325"
                     /inference="COORDINATES: protein motif:HMM:NF023520.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3574 domain-containing protein"
                     /protein_id="HEX2815005.1"
                     /translation="MRTLGAAVAAAGLVGLTGCATTPQGPLPICPVGQEAHRTAQLFF
                     GRNIGDKPGVSEADFRKFMDEDVTPKFPDGLTVMDGGGQWRGEENKLIREASKVVLIV
                     LPKGRDVSGRIDAVRNAYKTRFHQEAVLLITQAACVSF"
     gene            complement(542..1708)
                     /locus_tag="VHN39_01330"
     CDS             complement(542..1708)
                     /locus_tag="VHN39_01330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HEX2815006.1"
                     /translation="MIPNHGPTLEFGLGETADAIRETTARFAADKIAPIAAKIDETNT
                     FPRELWPQMGALGLHGVTVEEEHGGLGLGYLEHVVAMEEVSRASASVGLSYGAHSNLC
                     VNQIRRWATDDQKRRYLPGLISGEHVGSLAMSEAGSGSDVVSMRLVARKVGDRYVLNG
                     TKFWITNAPSADTLVVYAKTDPEASGKGITAFLIEKGFKGFSVSKKLDKMGMRGSDTA
                     ELVFEDCEVPEENVMGPENGGVGVLMSGLDYERAVLAAGPLGIMQACMDVVLPYVRER
                     KQFGKAIGSFELMQGKIADMYVALNSARAYVYAVAKACDAGMTTRFDAAGAILMASEN
                     AVRVSLEAVQALGGAGYTKDFPVERLVRDAKLYDIGAGTNEIRRFLIGRELVGG"
     gene            complement(1758..>1980)
                     /locus_tag="VHN39_01335"
     CDS             complement(1758..>1980)
                     /locus_tag="VHN39_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815007.1"
                     /translation="APLRALAVLGLVFFGGGIFWATYARPTVEAHLFSPRLVGGLAGI
                     AGVGFFVVAVYLLLDRLGRASEREARSRP"
BASE COUNT          318 a          689 c          652 g          321 t
ORIGIN      
        1 gtcgaaacac ttcgacgacc aggccgaacg ctacgcttca ggcaatttcc gcgaggtcta
       61 tttctacccc gaccagctgg ccggccacgt ggagcggacc taccgcccgg gccagtgaac
      121 cgtcagaacg agacgcaggc cgcctgggtg atcagcagga cggcttcctg gtggaagcgg
      181 gtcttgtagg cgttgcgcac ggcgtcgatg cggcctgaga cgtcgcggcc cttgggcagg
      241 acgatgagca ccaccttgga ggcctcgcga atcagcttgt tctcctcgcc acgccactgg
      301 ccgccgccat ccatcacggt caggccgtcg gggaacttcg gcgtcacgtc ctcgtccatg
      361 aacttgcgga agtcggcctc gctgacgccg ggcttgtcgc caatgttgcg gccgaagaag
      421 agctgcgccg tgcggtgggc ttcctgcccg accggacaga tcggcagggg cccttgaggc
      481 gtcgtcgcgc agccggtcag tccgaccagc cccgccgccg caaccgcagc ccccagcgtc
      541 ctcatccgcc caccagttcc cgtccgatca ggaaacgcct gatctcgttg gtgccggccc
      601 caatgtcgta gagtttggcg tcgcgcacca gccgttcgac cgggaagtcc ttggtgtagc
      661 cggcgccgcc cagggcctga acggcctcca gcgacacccg cacggcgttc tcgctggcca
      721 tcaggatcgc gccagccgcg tcgaaccggg tggtcatgcc cgcgtcgcag gccttggcca
      781 cggcatagac gtaggcccgc gccgaattca gcgccacgta catgtcggcg atcttgccct
      841 gcatgagctc gaaggagcca atggcctttc cgaactgctt gcgctcgcgg acgtagggca
      901 gcaccacgtc catgcaggcc tgcatgatgc ccagcgggcc cgcggccagg acggcgcgct
      961 cgtagtccag cccactcatc aggacgccca cgccgccgtt ttcggggccc atgacgttct
     1021 cttcggggac ctcgcagtcc tcgaacacca gttcggcggt gtcggacccg cgcatgccca
     1081 tcttgtcgag cttctttgag acgctgaagc ccttgaatcc cttctcaatt aggaaggcgg
     1141 tgatgccctt ccccgaggct tccgggtcgg tcttggcgta gacgacgagc gtgtccgcgc
     1201 taggcgcatt ggtgatccag aacttcgtgc cgttcaggac atagcggtcg cccaccttgc
     1261 gggccacgag gcgcatggac accacgtcgg agcccgaacc agcctcgctc atcgccagcg
     1321 agcccacgtg ctcaccgctg atcaggcccg gcaggtagcg ccgcttctga tcgtcagtgg
     1381 cccagcggcg gatctggttc acgcagaggt tcgagtgggc gccgtagctc aggcccaccg
     1441 aggccgaggc gcgggagacc tcctccatcg ccaccacatg ctccaggtag cccaggccca
     1501 ggccgccgtg ctcctcctcg acggtgacgc cgtgcaggcc aagcgcgccc atctgcggcc
     1561 agagctcgcg cgggaaggtg ttggtctcgt cgatcttcgc cgcgatcggg gcgatcttgt
     1621 cggctgcgaa gcgggcggtg gtttcgcgga tggcgtcggc ggtctcgccg aggccgaatt
     1681 ccagggtggg tccatggttc gggatcatgc ggcgcggctt agcatgcgtc gcagagcctc
     1741 gcgagcttgg ctgtagccta ggggcggctg cgcgcctctc gctcagaggc gcggcccagg
     1801 cggtcgagca ggagatagac cgccacaaca aagaagccga ccccggcgat gccggccagg
     1861 ccgcccacca gacgcgggct gaagaggtga gcctccacgg tcggccgcgc gtaggtcgcc
     1921 cagaagatgc cgccgccgaa gaagaccagg cccagcacgg ccagcgcccg taggggagct
//
LOCUS       DATAJL010000074         2758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14225,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000074 DATAJL010000000
VERSION     DATAJL010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14225"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VHN39_01340"
     CDS             <1..240
                     /locus_tag="VHN39_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2815008.1"
                     /translation="AAERAVVLSEGDILTAADFAPPTANASAAPGAPDFNLARSERAI
                     VEAALKRHGHNVSHAARDLGLTRAALYRRMVKHGL"
     gene            230..1435
                     /locus_tag="VHN39_01345"
     CDS             230..1435
                     /locus_tag="VHN39_01345"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815009.1"
                     /translation="MASRRVWTSLAAQIAVFVCGALAILAWRAGLPANTLVLALGGLG
                     AAFWVANQAVRSAEAARPEPEPPTENLDRERARRTLQAFLDQVPTPLVTWRPGEPTSA
                     VNRAARRLFRTDDVLTGPAGEEVTAALSASADTRRTVRLTSDGVARTYAISIADVVGA
                     GGALRLAALTDIEAEIQAAEATALRELLQVLSHEIMNSLTPLASLAQSAAEMLADGRP
                     EDLPVARDSVAVIARRTEGLHRFVEAYRRLARLPAPSPRRIGLGALLAEAAQLFETRW
                     APLGVRLAFTPPKPDIMIRLDPDLTAQALLNLLTNAAEAAIAGGRRPPTVRLFAHPTG
                     DGAAIVVEDNGPGVPDSQAAEIFHPFFTTKAEGSGIGLSLARQAVVSQGGQLLLETTP
                     GGARFVLAF"
     gene            1509..>2758
                     /locus_tag="VHN39_01350"
     CDS             1509..>2758
                     /locus_tag="VHN39_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEX2815010.1"
                     /translation="MRLWTWLGAIALIIVVALGVASSNKATIFAMIAHSRLPHVEPNH
                     PVTWAEGPTSAPAGRRPANVVFILADDMGFNDITFNGGGVARGAVPTPNIDSIGRQGV
                     AFANGYAGNATCAPSRAAIMTGRYPTRFGFEFTPAPVAFEKMVGTEAEPNSIAKPRFF
                     KDRLKDMPPASMVASAEAVNALAVPGSEITIAEVLKTRGYHTLHFGKWHLGGIKGSRP
                     EDQGFDESLGFIAGASMYLPEHAPDVENSKQPWDPIDRFLWPNLPYQVQFNGSPMFAP
                     KGYMTDYLTDQAVTAIKANKNRPFFMYFAPNAIHTPLQATRADYEALPGIKDHRLRVY
                     AAMVRNLDRNVGKILKTLKDEGLDQNTLVIFTSDNGGAGYIGLPEINKPYRGWKSTFF
                     EGGIHAPFFMRWPGVIAEGSRYSYP"
BASE COUNT          432 a         1042 c          889 g          395 t
ORIGIN      
        1 gccgccgagc gggcggtggt cctttccgaa ggcgacatcc tgacggccgc cgacttcgcc
       61 ccgcccacgg cgaacgccag cgccgcgccg ggcgcgccgg atttcaacct cgcccgctcg
      121 gagcgcgcca tcgtcgaagc agccctgaaa cggcacggcc acaacgtcag ccacgcggcc
      181 cgtgacctgg gcctcacccg cgcggcgctt taccggcgca tggtcaagca tggcctctag
      241 gcgcgtctgg accagcctcg ccgcccagat cgcggtcttc gtctgcggcg cgctggcgat
      301 cctggcctgg cgcgcgggcc tgccggccaa caccctggtc ctggcgctcg gcggtctggg
      361 cgcggccttc tgggtggcga accaggccgt gcgttccgcg gaggcggccc ggcccgaacc
      421 cgaaccgccc accgagaacc tcgaccgcga gcgggccagg cgcaccctgc aggcctttct
      481 cgaccaggtg ccgaccccgc tggtcacctg gcggccaggc gaaccgacca gcgccgtcaa
      541 ccgcgccgcg cgccggctct tccgcactga cgacgtgctt acagggcccg ccggcgaaga
      601 ggtgaccgcc gcgctttcag cctccgccga cacgcggcgc accgtgcgcc tgacctcgga
      661 cggggtggcg cgcacctacg ccatctccat cgccgacgtg gtgggcgccg gcggcgcgtt
      721 gcggctggcc gcgctcaccg acatcgaggc ggagatccag gccgccgagg ccaccgcgct
      781 gcgcgaactg ctgcaggtgc tgagccacga gatcatgaac tcgctgaccc cgctggcgtc
      841 actcgcgcag agcgcggcgg agatgctggc ggacggcagg ccagaggacc tgccggtggc
      901 ccgcgactcc gtggcggtga tcgcgcgccg caccgaaggc ctgcatcgct tcgtggaggc
      961 ctaccggcgc ctcgcccgcc tgcccgcgcc ctcgccacgg cgcatcggtc tcggcgcgct
     1021 cctggccgag gccgcccaac tcttcgaaac ccgctgggcg ccgcttggcg tgcggctggc
     1081 gttcacgccg ccgaagccgg acatcatgat ccgtctggac cccgacctga cggcccaggc
     1141 gctgctcaac ctcctgacca acgccgccga ggccgccatc gccggcggcc ggaggccgcc
     1201 caccgtgcgc ctcttcgccc atcccaccgg cgacggcgcg gcgatcgtgg tggaggacaa
     1261 cggcccgggc gtgccggaca gccaggccgc cgaaatcttc catccgttct tcaccaccaa
     1321 ggcggagggc agcggcatcg gtctcagcct cgcccgccag gccgtcgtca gccagggcgg
     1381 ccagctgttg ttggagacca cgcctggggg cgcgcgattc gtgttggcct tctgagagcc
     1441 gccacgcgcg gcatctatcg acactatcaa tgtcagtata tagcctctcg gaacaacggg
     1501 agaaggtgat gaggctttgg acctggctgg gcgcgatcgc gctcatcatc gtggtggcgc
     1561 taggcgtcgc ctcgtccaac aaggcgacga tcttcgccat gatcgctcac tcgcggctgc
     1621 cgcacgtgga gcccaaccat ccggtgacct gggctgaggg gcccacgagc gcgcccgccg
     1681 gccgccggcc ggccaacgtc gtcttcatcc tggccgacga catgggcttc aacgacatca
     1741 ccttcaacgg cggcggtgtc gcccgcggcg cggtgcccac gcccaacatc gattccatcg
     1801 gccgccaggg cgtcgccttc gccaacggct atgccggcaa cgccacctgc gccccttcac
     1861 gcgcggcgat catgaccggc cgctatccca cccgcttcgg cttcgagttc acgccggccc
     1921 cggtcgcctt cgagaagatg gtcggcaccg aggccgagcc caattccatc gccaagccca
     1981 ggttcttcaa ggaccggctg aaggacatgc cgccggcctc gatggtggcc tcggccgagg
     2041 cggtcaacgc gctggctgtg cccggaagcg agatcaccat cgccgaggtg ctgaagaccc
     2101 ggggctatca cacgctccac ttcggcaagt ggcacctggg cgggatcaag ggctcgcgcc
     2161 ccgaggacca ggggttcgac gagagcctgg gcttcatcgc cggcgcctcg atgtacctgc
     2221 ccgagcacgc ccccgacgtg gagaattcca agcagccgtg ggatccgatc gaccggttcc
     2281 tgtggccgaa cctgccctat caggtgcagt tcaacggctc gccgatgttc gcccccaagg
     2341 gctacatgac cgactacctg accgaccagg cggtgaccgc gatcaaggcc aacaagaacc
     2401 ggcccttttt catgtacttc gcgcccaacg ccatccacac gccgctgcag gccaccaggg
     2461 ccgactacga agccttgcct gggatcaagg accatcgcct cagggtctac gccgccatgg
     2521 tccgcaacct cgaccgcaac gtcggcaaga tcctgaagac cctgaaggac gagggcctcg
     2581 accagaacac gctggtgatc ttcaccagcg acaacggcgg cgccggctac atcggcctgc
     2641 cggagatcaa caagccctac cgcggctgga aatcgacctt cttcgagggc ggcatccatg
     2701 cgccgttctt catgcgctgg ccgggcgtga tcgccgaggg gtcgcgctac agctatcc
//
LOCUS       DATAJL010000075         3456 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78153,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000075 DATAJL010000000
VERSION     DATAJL010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3456
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78153"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..810)
                     /locus_tag="VHN39_01355"
     CDS             complement(<1..810)
                     /locus_tag="VHN39_01355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003164677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX2815011.1"
                     /translation="MTLSANQAVDVMRAAGEPSRLRILALLAREELAVLELCRVLDQS
                     QPRVSRHLKVLADAGLVARFPDGAWVFYRLTGAGPAGKLAAEVLASIDPADPVLQRDA
                     ERLSAVWAERAADAGEYFARNAARWDEIRSLYVSDADVETAILDAAGPGPFKRLVDLG
                     SGTGRMLTLLGPHAEAALGLDLSQQMLNLARNRVTEAGLQGCELRHGDIFSTRLPDES
                     ADLVVVHQVLHYLADPAAAVKEAGRIVAGGGRLIIADFAPHGLEYLREQHQH"
     gene            complement(843..1220)
                     /locus_tag="VHN39_01360"
     CDS             complement(843..1220)
                     /locus_tag="VHN39_01360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2815012.1"
                     /translation="MAKVLGIGGVFFKAADPQAVRDWYVRVLGFDINDWGGVTWPDPP
                     VGHGIWSVFEASNDYFSPSDASFMINFVVDDLEGVLAKAKAAGAEPVGEPVNSEYGRF
                     GWLMDPAGVKIELWEPPATPDAT"
     gene            complement(1231..2172)
                     /locus_tag="VHN39_01365"
     CDS             complement(1231..2172)
                     /locus_tag="VHN39_01365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815013.1"
                     /translation="MSEPLALIVAPFLTVLEPAFQKGGLTTARAWELTDDQRPHVRAI
                     VHAGEVVLARELLAGLPALGLIACVSVGYDGIDVAWCRANGIEVTHARGLNAEDVADH
                     AIGLMLSAWRNIPALDRIVREGRWVQEARIGSQPSLGGRTLGVVGLGHIGAAVARRAE
                     ALRLNVQWWGPRPNDAAPWPRAQSLLALAEASDILVVCARAEAANRGMVSARVIEAVG
                     PRGMIVNVGRGQLIDEDALIAALQDGRLWRAALDVFAQEPTPAERWAEVPNAVLTTHT
                     AGSSNEALPLMVAQAVDNVQRFLAGEGLASPVAPVAD"
     gene            2387..>3456
                     /locus_tag="VHN39_01370"
     CDS             2387..>3456
                     /locus_tag="VHN39_01370"
                     /inference="COORDINATES: protein motif:HMM:NF017760.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815014.1"
                     /translation="MTSKSPPRSPLWRQSDFLHLWGAQTVSDFGAWITRTGLPMMAVM
                     GLAATPAQLGLLAALTSGPSLIIGLVAGDFIDHTARRPILIAADLARAAILITLPVAA
                     WLGLLSMLQVYAAAALVAAASVLFDIADHAYLPGLLGKALVTDANAKISASESVAEMA
                     GPALAGVLFQWLTAPIAVAVNAATYILSALLLARIRTPEPAAEPGTRRRGWVDGVVTG
                     ARTAWGEPRVRILLIMTGIGSLFGGFFSALYIAFVLRNLGLGPVLLGVGIAVGGFGAL
                     VGSVLAQPMARWFGVGPAICLAGALSALGTMIVLLAPANPVGAMTALVISQLVGDVFG
                     IVPLILATSLRQTLLPQNVLGRV"
BASE COUNT          485 a         1277 c         1169 g          525 t
ORIGIN      
        1 gtgttggtgc tgctcgcgca gatattcgag cccgtggggc gcgaagtcgg cgatgatcag
       61 ccgcccgccg ccggccacga tgcgtccggc ttccttcacc gccgcggccg ggtcggccag
      121 gtagtgcagc acctggtgca cgacgacgag atcggcgctc tcgtcgggca ggcgggtgga
      181 gaagatgtcg ccgtggcgca gttcgcagcc ctggaggccg gcctcggtca cccggttgcg
      241 ggcgaggttc agcatctgct gcgataggtc caggcccagc gccgcctcgg cgtgcgggcc
      301 gagcagggtc agcatccgcc cggtgccgct gcccaggtcc accagccgct tgaacggccc
      361 ggggcctgcg gcgtcgagga tggcggtctc gacatcggcg tcggagacat agagcgagcg
      421 gatctcgtcc cagcgcgcgg cgttgcgggc gaagtactcg ccggcgtcgg cggcgcgctc
      481 ggcccagacg gctgacagcc gctcggcgtc ccgctgcagg accgggtccg ccggatcgat
      541 cgaggccagc acttcggcgg ccagcttgcc cgccgggccg gcgccggtca ggcggtagaa
      601 cacccaggcg ccgtccggaa accgcgccac cagcccggcg tcggccagca cctttaagtg
      661 tctggaaacc cgcggctggc tttgatccag cacgcggcac agttcgagga ccgccaactc
      721 ttcgcgggcc aagagtgcta ggatgcgcag gcgcgagggt tcccccgccg cacgcattac
      781 gtccacagcc tgatttgccg acagagtcat ggtcggcata aagatatgct tatgtcttta
      841 tgtcaagtcg cgtcaggcgt cgccggcggt tcccagagct cgatcttcac cccggccgga
      901 tccatcagcc agccaaagcg gccgtactcg ctgttgacgg gctcgcccac cggctcggcg
      961 ccggcggcct tggccttcgc cagcacaccc tccaggtcgt cgacgacgaa gttgatcatg
     1021 aaagacgcgt cggacggcga gaagtagtcg ttggaggcct cgaacacgct ccagattccg
     1081 tggccgaccg gcggatccgg ccaagtgaca ccgccccaat cgttgatgtc gaagcccagc
     1141 acgcggacat accaatcgcg cacggcctgg gggtccgccg ccttgaagaa cacgccgcct
     1201 atgcccagca ccttggccat gtcgccctcc ctagtccgcc acaggcgcca cagggctggc
     1261 cagcccctcg cccgccagga acctttgcac attgtcgacc gcctgggcga ccatcaaggg
     1321 caaggcctcg ttgctggagc cggcggtgtg ggtcgtgagg accgcgttcg gaacctcggc
     1381 ccagcgttcc gccggggtcg gctcctgcgc gaagacatcc agcgccgcgc gccacagccg
     1441 cccgtcctgc agcgccgcga tcagcgcgtc ctcgtcgatg agctggccac ggccgacgtt
     1501 gacgatcatg ccccgcggtc cgaccgcctc gatcacccgg gctgagacca tgccgcggtt
     1561 ggcggcctcg gcgcgggcgc agaccaccag gatgtcgctg gcctccgcca gcgccagcag
     1621 gctctgcgcc cgcggccagg gcgcggcgtc gttggggcgc gggccccacc actgcacgtt
     1681 cagccgcagc gcctcggcgc ggcgggccac cgcggcgccg atgtggccca gccccacgac
     1741 gccgagcgtc cggccgccca ggctcggctg cgagccgatc cgcgcctcct gcacccaccg
     1801 gccctcgcgc acgatccggt ccagcgccgg gatgttgcgc caggccgaca gcatcaggcc
     1861 gatggcgtgg tcggccacat cctcggcgtt gagcccccgg gcatgggtga cctcgatgcc
     1921 gttggcccgg caccaggcca cgtcgatccc gtcatagccc acgctgacgc aggcgatcag
     1981 gcccagcgcc ggcaggccgg ccagcaactc gcgcgccagc accacctcgc cggcgtgaac
     2041 gatggcccgc acatgcggcc gctgatcatc ggtgagctcc caggcgcgcg ccgtggtgag
     2101 cccgcctttc tggaaagccg gttccagcac cgtcaggaac ggcgcgacga tcagggccag
     2161 gggctcggac atgcgggctg ggactcgatt ctgggcgcca gcctccacct atagccaagc
     2221 gagcggttcg cccaaacttg acttcaagaa cgccggtctt cagtaaggcc cccaggtgag
     2281 cggcggcggc cggaaaaaca ttcgctcacc ggcgcgccgt ctgtcgctcg gcgaccgatg
     2341 gcccagcggt cgtgcgaccg cgtcccagcc gtttgcgaac ctttccatga cctccaagag
     2401 cccgcccagg agccctctgt ggcgccagag cgattttctc cacctctggg gcgcccagac
     2461 cgtctcggac ttcggcgcct ggatcacccg cacgggcctg ccgatgatgg ccgtgatggg
     2521 cctggccgcc acgccggcgc agctcggcct gctcgctgcg ctgaccagcg gaccctccct
     2581 gatcatcggc ctggtcgcgg gggatttcat tgaccacact gcgcggcggc cgatcctgat
     2641 cgccgccgac ctcgcccgcg ccgcgatcct gatcaccctg ccggtcgccg cctggctggg
     2701 cctgctcagc atgctgcagg tctacgccgc cgcggccctg gtggcggcgg ccagcgtgct
     2761 cttcgacatc gccgaccacg cctatctgcc aggcctgctc ggcaaggccc tggtcaccga
     2821 cgccaacgcc aagatcagcg cgtccgagtc agtggccgag atggcgggcc cggcgctggc
     2881 cggcgtgctc ttccagtggc tgaccgcgcc catcgccgtg gcggtcaacg cggcgaccta
     2941 catcctgtca gccctgctgc tcgcccgcat ccgcacgccg gagccggccg ccgagcccgg
     3001 aacgcgccgg cgcggctggg tcgacggcgt ggtcacgggc gcaaggaccg cctggggcga
     3061 accgcgggtg cggatcctgc tgatcatgac cgggatcggt agcctgttcg gcggcttttt
     3121 cagcgcattg tacatcgcct tcgtcctgcg caacctgggc ctggggcctg tgctgctcgg
     3181 cgtcggcatc gccgtcggcg ggttcggcgc cctggtagga tcggtgctgg cccagcccat
     3241 ggcccggtgg ttcggcgtgg gtcccgcgat ctgcctggcg ggcgcgctct cggcgctcgg
     3301 caccatgatc gtgctgctgg cgccggcgaa cccggtgggc gccatgacgg ccctggtcat
     3361 ctcgcagctt gtcggggacg ttttcgggat agtcccgctg atcctggcca cgagcctgcg
     3421 ccagaccctc ctgccccaga atgtcctcgg ccgggt
//
LOCUS       DATAJL010000076         6599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40029,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000076 DATAJL010000000
VERSION     DATAJL010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6599
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40029"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1746)
                     /locus_tag="VHN39_01375"
     CDS             complement(<1..1746)
                     /locus_tag="VHN39_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="feruloyl-CoA synthase"
                     /protein_id="HEX2815015.1"
                     /translation="MDGERATQTAHFRDPRYAPRRLDVEHRADGEMVLTNPTPYSTRF
                     PTMTAALAHWAMTTPSRVWLAERSGEGWRTVTYAEALEQVQAIAGSLFAMGVVRLEPL
                     LILANNGIDHALISYAAMSVRMPIAPVSPQYGLRNANPQRLARACEVLKPACVYTDDA
                     ALFAEGLSAPGLAGLPVIASKNPRLHDVPFAQMLEGRTEVASARPSDPAKYLLTSGST
                     GHPKAVICSHGNVCLNSAQITACFDDPDPPVMVNSAPWSHSLGANSILHNTLHRGGTL
                     YIDHGQPTAARFGETVRNLREISPTYQNMVPAGWMLFVDELEKDPRLARRFFARVRVL
                     QYGGAALGQAVADRIQAVAMRTVGEKISFGSGYGATETGPTACNVHWANEVMGLIGLP
                     IPGTSVRLVPQAGKLDFRVKGPQVTSGYLGQPGLSARAFDDEGFYLIGDAARFVDPDD
                     PSQGMVFDGRLSENFKLASGTFVGVGDLRIGAVSAIGGAVTDAVVCGEGREAVGLLLY
                     PNPRMSPLDIDAAVRSGLEAFNTRASGSGGRVARALVLADAPDAASGEITDKGYIAQA
                     LARQRRAGAIARLFAD"
     gene            complement(1788..3020)
                     /locus_tag="VHN39_01380"
     CDS             complement(1788..3020)
                     /locus_tag="VHN39_01380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6596 domain-containing protein"
                     /protein_id="HEX2815016.1"
                     /translation="MGAEAILGETVREAGDRIRAALAIRFRDLDMAEEAFAFASLRAV
                     ETWSRDGPPRDPAAWLYAVGKRRAFDLGRRAKVRTGAVHDAPEPAPDPETILMAAFEP
                     IPDERLRLIFICCHPALAPEARIALTLRTLCGLSVERIARAWLTTEVAMLQRLTRAKR
                     KIRDARIRFEIPEPEAWGERLDAVLTTLEIAYAQAYEDAALASDAADLASETLRLSGL
                     LANLLPDEPEVLGLAALIRLTESRRPARLDGEGAMIPLSEQDVSLWDTRLIGEAGALM
                     RRAAELGRSGPYQLMAAIHAAHASRMETGVTAWSDIARLYDILLSVRPSAVAEVNRAV
                     AVGEAEGPDAGLAALAAVEGQPRLEGWLPYQAARAGLYAKAGRDAEAALALRAALALS
                     PAPAERMFLEDRLTRLTR"
     gene            complement(3034..3375)
                     /locus_tag="VHN39_01385"
     CDS             complement(3034..3375)
                     /locus_tag="VHN39_01385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX2815017.1"
                     /translation="MQYLLIIYSDETFSDPSVMQEITAAHMRLGAELQEAGAMVGGNR
                     LKPSDTATTVRTVGGAQSLHDGPYAETREQLAGYYLVEAPDLDAAIAWGKKIPGGPNY
                     AVEVRPIWSLG"
     gene            complement(3425..4207)
                     /locus_tag="VHN39_01390"
     CDS             complement(3425..4207)
                     /locus_tag="VHN39_01390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF599 family protein"
                     /protein_id="HEX2815018.1"
                     /translation="MIELGPLSLSPLNVGALSLFAVCWLFYQPLLILLGRRGGAVINT
                     DLMVVRSAWMRNMVRRENRFLDAQLLGQTLSSASFFASSNLILIAAAGGVLFGGQQTF
                     RNVSSLEVIKTSSRLLFEGQLALVVLTLARGLLDFIWGIRQLNYVLAAIGATPEQADE
                     ATLQAFGDVAGRLLNPALHSVNSGVRGYYFALAAAAWLFGPIAFITATLVAVGLLVWR
                     QRRSTAARAVADLRKLLEGSQPPGDQISPRPVESGRGRASLP"
     gene            complement(4200..5474)
                     /locus_tag="VHN39_01395"
     CDS             complement(4200..5474)
                     /locus_tag="VHN39_01395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815019.1"
                     /translation="MSALARIKAILGGSAGNLVEWYDWFAYSSTSLYFAALFFPKGDA
                     VAQQLQTAAIFAAGFIARPVGAWLMGVYADRAGRRAALTLSVALMSLGSFAIAILPTY
                     ATIGVLAQLGLLAARLVQGLSLGGEYGASATYMSEMAGKARRGFWSSFQYTSLIAGQV
                     AALVVLVVLQHVLSKADLAAWGWRVPFAIGGLLAIVVFWIRTGLEETRSYLKETSATS
                     ERGRTMDLIRQHPREFAIVLVLTAAGSLAFYAYTTYMQKFLVNTAGFSKDTGTAIMAG
                     VLVLYMAIQPGVGWLSDLVGRKTTMAVGLGLGALATYPVMTAISHSTSALAAFGLIMI
                     LVLCHSGYSAVNAVVKAELFPAHVRALGVSLPYALANALFGGTAEYVAGWLKQARIES
                     GFYVYVAIVMFAGAVAAARLRNTNVTSLIDDD"
     gene            complement(5610..5780)
                     /locus_tag="VHN39_01400"
     CDS             complement(5610..5780)
                     /locus_tag="VHN39_01400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012029389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3309 domain-containing protein"
                     /protein_id="HEX2815020.1"
                     /translation="MRRRDAVGLILIIILVLLLVGAFPTWGHSRNWGYFPSGGLGLIL
                     VIIIVLVLLGRI"
     gene            complement(5833..6228)
                     /locus_tag="VHN39_01405"
     CDS             complement(5833..6228)
                     /locus_tag="VHN39_01405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF983 domain-containing protein"
                     /protein_id="HEX2815021.1"
                     /translation="MSEIIHPLRRSVFRGLTGHCPACGHGKLFWKYLKVNGRCEACDT
                     DLARYPADDGPAYLTILLIGHLVVAPMLFLPIVWRSNPAYSLPIILIPLAILTLMVLP
                     RVKGGWVGMMYALGVKDTDARLHTADAAD"
     gene            complement(6346..>6599)
                     /locus_tag="VHN39_01410"
     CDS             complement(6346..>6599)
                     /locus_tag="VHN39_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815022.1"
                     /translation="RDGPLSLDRTQALHGRLMRQASPVQLGQAVGVGVRDGRPLTALR
                     LSLSARLIVEALTAPGGRQLVIGRARAALAETAARAQAA"
BASE COUNT         1082 a         2215 c         2367 g          935 t
ORIGIN      
        1 atcggcgaac agccgcgcga tggccccggc gcggcgttgc cgggccaacg cctgggcgat
       61 gtagcccttg tcggtgatct cgccggaggc ggcgtcgggg gcgtcggcca ggaccagcgc
      121 gcgcgccacg cgcccgcctg atccggacgc cctggtgttg aaggcctcca gacctgagcg
      181 gacggcggcg tcgatgtcga ggggagacat acgcggattg gggtagagca gcaggcccac
      241 ggcctcgcgg ccctcgccgc agaccaccgc gtcagtgacc gcgccgccga tggccgagac
      301 cgccccgatc cgcaggtcgc cgacgccaac aaacgtgccc gaggcgagct tgaagttctc
      361 ggagagccgc ccgtcgaaga ccatgccctg gctcggatcg tcgggatcca cgaagcgcgc
      421 cgcgtcaccg atcagataga acccctcatc gtcgaacgcc ctggcggaca gtccgggctg
      481 gcccagatag ccggaggtga cctgcgggcc cttcacccgg aaatcgagct tgccggcctg
      541 cggcacgagg cggaccgaag tccccggaat gggcaggccg atcagcccca tgacctcgtt
      601 ggcccagtgg acgttgcacg cggtggggcc ggtctcggtg gcgccatagc ccgagccgaa
      661 gctgatcttc tcgcccacgg tgcgcatcgc cacggcctgg atgcggtcgg ccaccgcctg
      721 gccgagcgcg gcgccgccat actgcagcac ccgcacgcgc gcgaagaacc gccgggccag
      781 acgagggtcc ttctccagct cgtcgacgaa cagcatccag ccggccggga ccatgttctg
      841 gtaggtgggc gagatctcac gcaggtttct gaccgtctcg ccgaaccgcg ccgccgtcgg
      901 ctggccatgg tcgatgtaga gcgtgccgcc gcggtgcagc gtgttgtgca ggatcgaatt
      961 ggcgcccagg ctgtggctcc agggggcgga attgaccatc accggagggt cgggatcgtc
     1021 gaagcaggcg gtgatctggg cggagttcag gcagacattg ccgtggctgc agatcaccgc
     1081 tttcggatgg cccgtggagc cggaggtcag caggtacttg gcggggtcgg agggacgcgc
     1141 gctcgccacc tcggttcggc cctcaagcat ctgggcgaag ggcacgtcgt gcaggcgcgg
     1201 gttcttcgag gcgatcaccg gcaatccggc caggcccggc gctgaaaggc cctcggcgaa
     1261 cagcgccgcg tcatcggtgt agacgcaggc gggcttcagc acctcgcagg cgcgcgccag
     1321 gcgctgcggg ttggcgttgc gcaagccgta ctgcggcgag accggggcga tcggcatgcg
     1381 cacgctcatc gccgcgtagc tgatcagggc atggtcgatg ccgttgttgg ccaggatcag
     1441 caaaggctcc aaccgcacca cgcccatggc gaagagcgag ccggcgatgg cctgcacctg
     1501 ttcgagggcc tctgcgtagg tgacggtccg ccagccctct ccggaccgtt cggccagcca
     1561 gacccggctg ggggtcgtca tcgcccagtg cgccagggcc gcggtcatgg tcgggaaccg
     1621 ggtcgaatag ggcgtgggat tggtcagcac catctcgccg tcggcgcgat gctcgacgtc
     1681 gaggcgccgc ggcgcatagc gcgggtcgcg gaagtgggct gtctgggttg cgcgttcgcc
     1741 gtccatctag ggagccttat tccaagcccg ggcggcgatg ggaaggctca gcgcgtcagg
     1801 cgggtcaaac gatcctccag aaacatccgc tcggccgggg cgggactgag cgccagcgca
     1861 gcccgcaacg ccagcgcggc ttccgcgtcg cggccggcct tggcgtagag gcccgcgcga
     1921 gcggcctgat acggcagcca gccctcgagc cggggttgcc cctccacggc ggcgagggcg
     1981 gcgaggcccg cgtcggggcc ctcggcctcg cccacggcga ccgcgcggtt gacctcggcg
     2041 accgcggagg ggcgcacgct caggaggatg tcatagagcc tggcgatatc gctccaggcg
     2101 gtgacgccgg tctccatccg cgaggcgtgg gcggcgtgga tcgcggccat aagctgatag
     2161 ggcccactgc ggccgagctc ggcggcgcgg cgcatcagcg ctccggcctc gccgattagc
     2221 cgggtgtccc aaaggctgac gtcctgctcg gagaggggga tcatcgcgcc ctcgccgtcg
     2281 agccgcgccg gtcggcggga ttcggtgagc cggatcagcg cggccaggcc cagcacctcc
     2341 ggctcgtctg gcaggaggtt cgcgagcaga ccggagagcc tgagggtctc gctggccagg
     2401 tcggcggcgt cggaggccag ggctgcgtcc tcataggcct gggcgtaggc gatctcgagc
     2461 gtcgtcagca cggcgtccag gcgctcgccc caggcctccg gctcggggat ctcgaagcga
     2521 attctcgcgt cgcggatctt tcgcttggcc cgggtcaggc gctgcagcat ggcgacctcg
     2581 gtggtcagcc acgcgcgggc tatgcgctcg acggaaagcc cgcagagggt gcgcagggtc
     2641 agcgcgatcc gcgcctccgg ggccagcgca gggtggcagc aaatgaagat cagccgcagc
     2701 cgctcgtccg ggatcggctc gaacgccgcc atcaggatgg tctccgggtc cggggctggc
     2761 tccggcgcgt cgtggacggc gccggtccgc accttggcgc ggcggcccag gtcgaaggcc
     2821 cgtctctttc ccaccgcata gagccaggcg gcggggtcgc gcggcggccc gtcccgcgac
     2881 caggtctcca ccgcgcgcag gctcgcgaag gcgaaggcct cttcggccat gtccaggtcg
     2941 cggaagcgga tcgccagcgc cgcgcggatg cggtcccccg cctcgcgcac ggtctcgccg
     3001 aggatcgcct ccgcgcccat cagtccgccc gtctcagccg agcgaccaga tcggccggac
     3061 ttcgacggcg tagttggggc cgccgggaat cttcttcccc caggcgatgg ccgcgtcgag
     3121 gtccggcgcc tcgaccaggt agtagccggc caactgctcg cgggtctcgg catagggtcc
     3181 gtcgtgcagg ctctgcgccc cgccgacggt ccgcacggtc gtggcggtgt ccgacggctt
     3241 aaggcgattg ccgccgacca tggcgccggc ctcctgcaat tccgccccaa gccgcatgtg
     3301 cgccgcggtg atctcctgca tgaccgacgg gtcgctgaag gtctcgtccg aatagatgat
     3361 cagcagatac tgcatggttg ggtcctcgtg cgttgagcca gcttggctga cgcgaagggc
     3421 cgcgtcacgg gagagacgcg cgacctcggc cggattcgac aggccgcggc gaaatctggt
     3481 cgcccggcgg ctgtgagcct tccagcagct tgcgcaggtc ggcgaccgcc cgggcggcgg
     3541 tggagcggcg ctgacgccag accaggaggc ccacggccac cagagtggcg gtgatgaagg
     3601 cgatcgggcc gaacagccaa gccgctgcag ccagcgcgaa atagtagcca cggacgccgg
     3661 aattgaccga gtggagcgcc ggattgagca ggcggccggc gacgtcgcca aaggcctgca
     3721 aggtggcctc gtcggcctgt tccggcgtgg ccccgatggc cgccaggaca tagttgagct
     3781 ggcggattcc ccagatgaag tcgagcaggc cacgggccag cgtcagcacc accagcgcca
     3841 actggccttc aaagagcagt cgcgatgagg tcttgatcac ctccaggctg gagacgttgc
     3901 ggaaggtctg ctggccgcca aacaggacgc cgcccgccgc cgcgatcagg atcaggttcg
     3961 acgaggcgaa gaacgatgcc gaactgaggg tctggccgag caactgggcg tccaggaacc
     4021 ggttctcccg ccgcaccatg ttgcgcatcc aggcgctgcg cacgaccatc aggtcggtat
     4081 tgatcaccgc cccgccgcgc cggcccagca ggatcaggag gggttggtag aacagccagc
     4141 agaccgcgaa gaggctgagc gcgccgacat tcagggggct gaggctcaga ggtccgagtt
     4201 caatcatcgt cgatcaggct ggtgacattg gtgttgcgaa gccgcgccgc ggcgacggcg
     4261 ccggcgaaca tgacgatggc cacatagaca tagaagccgc tctcgatcct ggcctgcttc
     4321 agccagccgg cgacatattc cgccgtgccg ccgaacagcg cattggcgag cgcatagggc
     4381 agcgacacgc ccaacgcccg gacgtgcgcc gggaacagct cggccttcac caccgcgttc
     4441 accgcggaat agccggaatg gcagagcacc aggatcatga tcaggccgaa ggcggccagc
     4501 gccgaggtgg agtgcgaaat cgcggtcatc accggatagg tggcgagcgc ccccaggccc
     4561 aggcccaccg ccatggtggt cttgcgcccc accaggtcgg agagccagcc gacgcccggc
     4621 tggatcgcca tgtagagcac cagcacgccc gccatgatcg cggtgccggt gtccttggag
     4681 aagcccgcgg tgttgaccag gaatttctgc atgtaggtcg tgtaggcgta gaaggccaag
     4741 gagccggcgg cggtcagcac cagcacgatg gcgaactccc tgggatgctg gcggatcagg
     4801 tccatggtgc ggccgcgttc cgacgtcgcc gaggtctctt tgagatagga ccgcgtctcc
     4861 tccaggccgg tgcggatcca gaacaccacg atggccagca ggccgccgat ggcgaagggg
     4921 acgcgccagc cccatgccgc caggtcggcc ttggagagca cgtgctgcaa taccaccagc
     4981 acaacgaggg ccgccacctg gccggcgatc aggctggtgt actggaagga cgaccagaag
     5041 ccgcggcggg ccttgccggc catttccgac atgtaggtgg cgctggcgcc atattcgcca
     5101 cccagcgaca ggccctggac gaggcgcgcg gcgagcaggc caagctgcgc caggaccccg
     5161 atcgtcgcat aggtcggcag gatcgcgatg gcgaaggagc ccaggctcat gagcgccacg
     5221 gagagcgtca gggccgcgcg ccggcccgcc cggtcggcat agacgcccat cagccaggcg
     5281 ccgaccggcc tggcgataaa gcccgcggcg aagatggcgg cagtctgcag ttgctgggcg
     5341 acggcgtcgc ccttgggaaa gaacagcgcc gcgaaataga ggctggtgga ggagtaggcg
     5401 aaccagtcgt accactcgac cagattgccg gccgagccgc cgaggatcgc cttgatccgc
     5461 gccagcgccg acattggcgc gacttgggcc gagcctcggg gcgcgtctcg gggcggctcc
     5521 gtcgttgctg tcccgccgcg cgccatgcat cccccgtttg cccggggagg atgctaggcg
     5581 agtttggctg tcacgtcagg gggcggttgc tagatgcgcc ccagcaggac gagcacgatg
     5641 atgatcacca ggatcaggcc cagtccgcca ctcgggaaat acccccagtt gcgcgaatgc
     5701 ccccaggtcg ggaaggcccc aaccagcagc agcaccagta tgatgatcag gatcaggccc
     5761 acagcgtctc tcctccgcat atctcgggga gcaaacacgc ggccatggtg aaggttcctg
     5821 cgcgagcggt ggttagtcgg cggcgtcggc ggtgtgcagg cgggcgtcgg tgtccttgac
     5881 gccgagcgca tacatcatcc cgacccagcc gcccttgacc ctgggcagca ccatcagcgt
     5941 caggatcgcg agcgggatca ggatgatcgg cagcgaatag gccggatttg aacgccagac
     6001 gatcggcagg aacagcatcg gcgccaccac caggtggccg atgagtagga tagtcagata
     6061 ggccgggccg tcgtcggccg gatagcgggc gaggtcggtg tcgcaggcct cgcagcggcc
     6121 gttcaccttc aggtatttcc agaacagctt gccgtggccg caggccgggc aatggccggt
     6181 caggccccgg aagaccgacc gccgcaacgg atggatgatc tcggacatgg ccgtcatatg
     6241 ggctcgcggg cgcccgaaag aaacccctcg caggcccatg cgccgcactt gtcgcaggcg
     6301 ttattctgtc gcgggattcg tgagttttcg gcctggattt tggctctagg ccgcctgggc
     6361 ccgcgcggcg gtctcggcca gggcggcgcg cgcccgcccg atcacgagct ggcggccgcc
     6421 gggcgctgtc agcgcctcca cgatcaggcg cgcgctcaat gacagacgaa gcgcggtcag
     6481 cggcctgccg tcgcggacac cgaccccgac ggcctgccca agttgcaccg gcgaggcctg
     6541 gcgcatcagc cgcccatgca gcgcctgggt ccggtcgagg ctcaggggcc cgtcacgat
//
LOCUS       DATAJL010000077         4955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_1369,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000077 DATAJL010000000
VERSION     DATAJL010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4955
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1369"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            127..336
                     /locus_tag="VHN39_01415"
     CDS             127..336
                     /locus_tag="VHN39_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815023.1"
                     /translation="MRSSYATARGPVLLKTPNARHQAGRRRVGVVCAIVTLALATGLL
                     GATIHPNPALSSQPATGPFSYFPSE"
     gene            348..635
                     /locus_tag="VHN39_01420"
     CDS             348..635
                     /locus_tag="VHN39_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815024.1"
                     /translation="MTESSRPDDTGHPVLAATPARQGRYGRHMFWVLVLGTALAAIGL
                     FLAWTWKAPSLARDDAKVANTHAQSGAAFSAPDPAPATVQRGTDRSASPPP"
     gene            complement(724..897)
                     /locus_tag="VHN39_01425"
     CDS             complement(724..897)
                     /locus_tag="VHN39_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HEX2815025.1"
                     /translation="MLGWALVFAVLAILAGFLGFVSLAGLAATIAKVCFVVFLVLLVA
                     GFVIRAIRGQSVV"
     gene            complement(1031..1834)
                     /locus_tag="VHN39_01430"
     CDS             complement(1031..1834)
                     /locus_tag="VHN39_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2815026.1"
                     /translation="MSLLARLAPHLPYVRRYARALTGDQTTGDHYVRVALEALAAGDR
                     TLEANLTPRVALYHVFHAIWCSSGAQLENPGTDDHSGADDTTQRLMRIAPRSRQAFLL
                     TALEGFTPSEAAQILDSDFAEVEQLIAEAQREIDAELATDVLIIEDEPVIAADIEALV
                     KELGHTVVDIAATRTEAVDAVSRKTPGLVLADIQLADGSSGIDAVKDILARFNVPVIF
                     ITAFPERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPRKASRQAA"
     gene            2082..2273
                     /locus_tag="VHN39_01435"
     CDS             2082..2273
                     /locus_tag="VHN39_01435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016989 - sigma factor antagonist activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NepR family anti-sigma factor"
                     /protein_id="HEX2815027.1"
                     /translation="MIEDMPSPDPRKPSAALDEARLRQQAIGVRLRQMFDEVVNEDVP
                     DEFLEILRKHDAKTSEKGG"
     gene            2270..2875
                     /locus_tag="VHN39_01440"
     CDS             2270..2875
                     /locus_tag="VHN39_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2815028.1"
                     /translation="MSADTATRPSRSGTDDEGFKRELVLLIPHLRAFARTLCGDPTQA
                     DDLAQDAMMKAWDARASFQMGTNMKAWTFMILRNQFYSEKRRSWRQSQLDQEAAERTL
                     VAVDDPEAPVALDELRLGLSMLPAEQREALILVGAGGFAYEEAAEICACAVGTVKSRV
                     SRARRALHGILETGSYDRDGASAGDAMRAILADAERLSTVR"
     gene            2912..4636
                     /locus_tag="VHN39_01445"
     CDS             2912..4636
                     /locus_tag="VHN39_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX2815029.1"
                     /translation="MTGLPWGSLSTIRVRLGAALAAALLPVLILGVVQSAIAFNRERV
                     TLRQNLGFAAERSAATARSRMEGAGILLQTLAPGAIGYQCADRLAEVARRIPGYANLV
                     RFDRRGRVACAAGDVPLDAQRVLKPWFQRLSHGDQLVITRDPGAAFASQPSVLAAVRA
                     AAPDGAFDGAFAAVITLASLQPSITDPTLPAHADVALADAGGRYISETNAKAFPVLPR
                     GWRDQVRLNGAHVWYGSDAIGRRRVYAAAPVAGDEVFVVLSAQSPGILSWAWLNPLSG
                     ILFPLLTFGLALITVLLVTDRVVVRWIAYLQRIASLYARGRLSVRPVQAEQMPPEIRE
                     LAETLEDMADAIVGRDASLRDSLAQKDALMREIHHRVKNNLQVISSLLNMQQRALTDP
                     AARAAMSDTRQRITALALIYRALYQGPDLKRVDLRPFLEELTAQLVAGEISHGPSVRT
                     ELSVDALVIDPDRLAPLALFAVEAITNAQKHAFAGRGGVLKLAFRVRGEEAELEISDD
                     GEAAEDALVASGVGRTLMTAFARQLRGRAELVRNEGGGVTARLLFPTPAADAPQPDET
                     SSGNQAAA"
     gene            4678..4815
                     /locus_tag="VHN39_01450"
     CDS             4678..4815
                     /locus_tag="VHN39_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HEX2815030.1"
                     /translation="MRKFVLFAVMAASLAVAACNTVEGAGKDVSAAGKAVTNTADDAK
                     H"
BASE COUNT          798 a         1714 c         1706 g          737 t
ORIGIN      
        1 aagatattga ttcaataagg tttcggacgg agcgccggcg caggccgaac tccggcggaa
       61 cgtgcggcgc ctgccgggcg tttgtttgcc aggcgggcag aacgccccgc gggccggaac
      121 gacaccatgc gatcaagcta cgccaccgcg cgcgggcccg tgctgctgaa gacgcccaat
      181 gcccgccatc aggcgggacg gcgtcgggtg ggcgtggtct gcgccatcgt cacgctggcg
      241 ctcgcgactg ggctgctcgg cgcgacgatc cacccgaacc ccgccctctc gagccagccg
      301 gcgactggcc cgttcagcta tttcccgtct gagtaaagga gccaagcatg accgagtcct
      361 cgagacctga cgacaccggt cacccggtgc tggccgccac gcccgcgcgc cagggccgat
      421 acggccggca catgttctgg gtgctggtgc tcggcaccgc gctcgccgcg atcgggctgt
      481 tcctggcctg gacctggaaa gcgccttcgc tggcgcgcga tgacgccaag gtcgccaata
      541 cccatgccca gtccggggcc gccttcagcg ccccggaccc ggctcccgcc accgtgcagc
      601 gaggaacgga ccgctcggcc tcgccgccgc cctagcgccg cgcccacggg tccagacgaa
      661 aaaggccgcc ccgcgagggg cggccttttt catggatgtc cgcgcccacg ccggcgtctc
      721 gccctagacc accgactgcc cgcggatggc gcggatcacg aagcccgcca ccagcagcac
      781 caggaagacc acgaaacaca ccttggcgat ggtcgccgcc aggcccgcca ggctgacgaa
      841 accaaggaag ccggcgagga tcgccagaac cgcaaacacc agagcccagc caagcatcga
      901 agtctctcct cacgcggcga aaaagggcgc cgcgatgccg cgacgccctt ttgtaacgtg
      961 aagcttgccg gagcgttccg ccccgagtgg gacagccgga ggcggccgtc acactcggcg
     1021 ctttgcgttt ctacgccgcc tggcgggagg ccttgcgggg gtggaagaac agggcctggc
     1081 cgatcgccgc cttcaccgtc tcgggctgga agggcttggt gatcaggaag gtaggctctg
     1141 gacgctcgcc ggtcagcagg cgctcgggaa aggcggtgat gaagatcacc ggcacattga
     1201 accgcgccag gatgtccttc accgcatcga tgcccgagga gccgtcggcc agctggatgt
     1261 cggccagcac aaggcccggc gttttgcgcg acacggcgtc gacggcttcg gtgcgggtgg
     1321 cggcgatgtc gaccaccgtg tggccgagct ccttcaccag cgcctcgata tcggcggcga
     1381 tgaccggctc gtcctcgatg atcaggacgt cggtggccag ttcggcgtcg atctcgcgct
     1441 gcgcctcggc gatcagctgc tcgacctcgg cgaagtcgct gtcgaggatc tgggcggctt
     1501 ccgacggcgt gaagccctcg agcgcggtga gcaggaaagc ctggcgcgac ctgggcgcga
     1561 tgcgcatcag gcgctgggtc gtgtcgtcgg cgccggaatg gtcgtcagtc cccggattct
     1621 caagctgggc gccggagctg caccagatgg cgtgaaacac gtgatagagc gccacgcgcg
     1681 gcgtgagatt ggcttccaga gtgcggtcgc cggcggcaag cgcctcgagg gcgacgcgga
     1741 cgtaatggtc gcccgtggtc tgatcgccgg tgagggcgcg ggcatagcgg cggacgtaag
     1801 gcaggtgtgg cgcaagacga gctagcagac tcaagggatg acccctcccg ttggtattga
     1861 gcgcgtgggc gtaaactcca gatcaggtgt ccgcaggaat tcaccccgca agacgcccca
     1921 atcatgatgc aaaaacgcta caagggggaa ctagttcccg ggtcggcggg ttttccgcat
     1981 cttgcgcctt ggccgacggg aactcgaagc ggagccctgc gttgagcgat gacgaggatg
     2041 ccacaagggg gcggccgtcg cgaaagcggc acgccgagag tatgatcgaa gacatgcctt
     2101 caccagaccc gcgcaagccg tccgccgcgc tcgacgaggc gcggttgcgc caacaggcta
     2161 tcggcgttcg cctgcgccag atgttcgacg aggtggtcaa cgaggatgtc ccggacgagt
     2221 tcctggagat tcttcgcaag cacgacgcca agacctcgga gaagggcgga tgagcgcgga
     2281 taccgcgacc cgaccctccc gctccggaac cgacgacgaa ggcttcaagc gcgagctggt
     2341 gctgctgatt ccgcatctgc gcgcctttgc ccggaccctg tgcggcgacc caacccaggc
     2401 cgacgacctg gcgcaggacg ccatgatgaa ggcctgggat gcgcgggcca gtttccagat
     2461 gggcaccaac atgaaggcct ggaccttcat gatcctgcgc aaccaattct attcggagaa
     2521 gcgtcggtcc tggcgccaaa gccaactcga tcaggaggcc gccgaacgga ccctggtggc
     2581 ggtggacgat cctgaggccc cggtggcgct ggacgaactc cgcctgggcc tgtccatgct
     2641 gcccgccgaa cagcgcgagg cgctgattct ggtgggagcc ggcggcttcg cctacgagga
     2701 ggccgccgag atctgcgcct gcgccgtggg cacggtgaag agccgcgtca gccgggcccg
     2761 gcgcgccctg cacggaatcc tggagaccgg ctcctacgac cgcgacggcg cgtcggccgg
     2821 ggacgccatg cgggctatac tggctgatgc ggagcggcta agcaccgttc gttgaggacg
     2881 ggaaaagcct ctccatgacc cggacgccct cgtgaccggt ctgccttggg gttcgctgag
     2941 cacgatcagg gtccgcctgg gcgcggcgct cgcggcagcc ctgttgccgg tgctgatcct
     3001 gggcgtcgtg cagtcggcca tcgccttcaa ccgcgaacgc gtcacccttc gccagaacct
     3061 gggcttcgcc gccgaacgca gcgcggccac agcgcgcagc cgcatggagg gcgcgggcat
     3121 cttgctgcag acgctggcgc ccggcgccat cggctatcag tgcgccgacc gcctggccga
     3181 ggtcgcgcgg cgcatccccg gctacgccaa cttggtgcgg ttcgaccgac gcggacgggt
     3241 ggcctgcgcc gccggcgacg tgccgctgga cgcccaacgg gtccttaagc cctggttcca
     3301 gcggctctcg cacggcgacc agctggtcat cacccgcgat ccgggagccg ccttcgccag
     3361 ccagccgtcg gtgctggcgg cggtccgggc cgctgcgccg gacggggcct tcgacggcgc
     3421 cttcgccgcg gtgataacgc tggccagcct gcagccttcg atcaccgatc cgaccctgcc
     3481 ggcccacgcc gacgtggccc tggccgacgc cggcggccgc tacatcagcg agaccaacgc
     3541 caaggcgttc cccgtcctgc cgcgcggctg gcgcgaccag gtgcggctga acggcgccca
     3601 cgtctggtac ggctccgacg ccatcggccg gcggcgtgtc tacgccgcgg ccccggtggc
     3661 cggcgatgag gtgttcgtgg tgctgtcggc gcagtcgccg gggatcctct cctgggcctg
     3721 gctgaacccg ctctccggca tcctcttccc gctcctgacc ttcggcctgg cgttgatcac
     3781 ggtgctgctg gtcaccgacc gggtggtggt gcgctggatc gcctatctgc agcggatcgc
     3841 atcgctctat gcgcgcggcc gcctctcagt gcgcccggtc caggccgagc agatgccgcc
     3901 ggagattcgc gaactcgcag agacgcttga agacatggcc gacgccatcg tgggccgcga
     3961 cgcgtccctg agggattcgc tggcccagaa ggacgcgctg atgcgggaga tccaccaccg
     4021 ggtgaagaac aacctgcagg tcatctcaag cctcttgaac atgcagcagc gggcgctgac
     4081 cgacccggcg gcgcgggcgg ccatgtccga cacccgtcag cggatcaccg cgctcgcgct
     4141 catctaccgc gccctctacc agggccccga tctgaagcgg gtcgatctgc ggcctttcct
     4201 ggaggagctg accgcccagc tggtggcggg ggaaatcagc catgggccca gcgtgcgcac
     4261 ggagctgtcg gtggacgccc tggtgatcga ccccgaccgg ctggccccac tcgccctctt
     4321 cgccgtcgag gcgatcacca atgcccagaa gcacgccttc gccgggcgtg gcggagtgct
     4381 gaagctcgcc ttccgcgtgc gcggcgaaga ggcggagctg gagatttccg acgacggcga
     4441 ggcggccgag gacgctttgg tggcctccgg tgtgggccgc accctgatga ccgcgtttgc
     4501 ccgccagctg cgcggccgcg ccgaacttgt gcgcaacgag ggcggcggcg tcaccgcgcg
     4561 gctgctgttc ccgacccccg cggccgacgc gccgcaaccc gatgaaacca gttcggggaa
     4621 ccaagcggca gcgtaggggt tgttagcggg gcaagtttca aaccctggag aaaccccatg
     4681 cgtaagttcg ttctgttcgc cgtcatggcc gccagtctgg ccgtcgccgc ctgtaacacc
     4741 gtggaaggcg ccggcaagga cgtgtccgcc gccggcaagg ctgtgaccaa cacggccgac
     4801 gacgccaagc actaagccga cgtcacctcg gatttctgag agccccgccg gagacggcgg
     4861 ggttttcttg ttcagcctca ggccgcggcg gcgaagcccg gagcctgctc atgggcgccc
     4921 agcaccagcg aaccgcccgg cgccagcgcc ccttg
//
LOCUS       DATAJL010000078         3267 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_90817,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000078 DATAJL010000000
VERSION     DATAJL010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90817"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VHN39_01455"
     CDS             <1..286
                     /locus_tag="VHN39_01455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815031.1"
                     /translation="VSASTRSLALFIDKQQLTRKLDSDVAFGFRFYRALAVFLADRLR
                     GSDRRLAYGVTKSLRGEAIMEDELDLAILDNLSMAGERFNGLLKMLSAGG"
     gene            complement(302..1780)
                     /locus_tag="VHN39_01460"
     CDS             complement(302..1780)
                     /locus_tag="VHN39_01460"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX2815032.1"
                     /translation="MIQGRQAGASTRRWRIRCAAGAGLAAVWLAGCTVGPDFKQPAAP
                     SAQAYVADRSPTLSDPGRAEIRQTLAFGQPLADDWWTAFHSPQLDTLVREALANNQSL
                     AAVRATLVQAREAEARTRGGAYPQVDFAATASRLKTSLLPEGIDQLGPITNDFTLGPG
                     VTYALDIFGGARRLREQKHALTEHQRYQLDAAGLAITGDVARRAIDLARAQDQIGALE
                     EVLRDDEQTVQMVDRLFGLRLKTIADLDAARSQLAADRALLPSLRQQAAVDRNAIAVL
                     TGKPPGDATPPDFHLDALALPDSLPVSVPSALVRQRPDIRAAEAQLHAASAGVGVATA
                     QLYPSLTLSAGTVQESLSASNLFSGAATGGFVAAGLTAPILHGGELKARRREAVAVYD
                     GAYATYRQTVLESFGQVADVLQALDHDAQALDAQRQSVEAAISAEDAAKAQYAVARVD
                     ILQVLNAQRQLARARMQLTQARAQRYLDTVQLFAAMGGGWVR"
     gene            complement(1777..3165)
                     /locus_tag="VHN39_01465"
     CDS             complement(1777..3165)
                     /locus_tag="VHN39_01465"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2815033.1"
                     /translation="MGSSRAASRYVDDVAYVRGFIPELSPAWLDFTGLLWGFEPVDRT
                     GGFAWCDLGCGQGVNAAVFAATHPSGQFHGIDFLAEHIDHARGLAKAAGAGNAVFHAA
                     DFGAAVDLDLPPLDYITAHGVYSWVDDRARRDLRRFVDRHLKPGGRVYVSYNALPGRA
                     PDAPFQRLMLELGQRGSGDSAARVREAGRLAAKLLAMKTPALTASRMAQVLLARGAAP
                     NERYLAHELMGANWRPLSVLDVRADMAEIDLEPAGSASLIENFDDFVLGKAARKLLAK
                     VDDPDLHELVRDYLTNQSFRRDVFVRDGVRISEAVRRRRLLDTPFALAAPKAKTAYSV
                     RTPAGEIKFDNPVARRMVSTLAKGPRRLGELAGDGVNEADILANAMILAGAQLIWPVE
                     AGAGGAQAFNRAVFDRLGGPDELNLLALDCGTAIAARPSLLAALKDRQGGDQGSIAAW
                     RRHFAAHGAVAA"
BASE COUNT          481 a         1147 c         1162 g          477 t
ORIGIN      
        1 ggtttcggcc agcacgcgct cactcgccct gttcatcgac aagcagcagc tcacccggaa
       61 gctggacagc gatgtggcct tcggatttcg cttctaccgc gcgctcgcgg tgttcctggc
      121 cgaccgcctg cgcggctccg atcgccggct ggcctatggc gtgacgaagt cgctgcgtgg
      181 cgaggcgatc atggaggacg agctggacct ggcgatcctc gacaacctgt ccatggccgg
      241 cgagcggttc aatgggctgc tgaagatgtt gagcgccggc ggctgaccgc gtccggcggc
      301 ttcaccgcac ccagccgccg cccatggctg cgaacagctg gacggtgtcg agatatcgct
      361 gcgcccgcgc ctgggtaagc tgcatgcgtg cgcgggcgag ttggcgctgg gcgttcaaca
      421 cctgcaggat gtcgacgcgg gccaccgcgt actgcgcctt ggcggcgtcc tcagcactaa
      481 tcgccgcctc caccgactgc cgctgcgcat cgagcgcctg ggcgtcatgg tccagcgcct
      541 gcaggacgtc ggcgacctgg ccgaaggact ccaacacggt ctggcgatag gtggcgtagg
      601 cgccgtcata gaccgcgacc gcctcgcgcc gcctggcctt gagttcgccg ccgtgaagga
      661 tgggggcggt caggccggcc gcgacgaagc cccctgtagc cgcgccgctg aagaggttcg
      721 aggcggacag cgactcctgg acggttcccg ccgacagggt gagactcgga tagagctgcg
      781 ccgtggcgac gcccacgccc gcgctggccg cgtgcaactg ggcctccgcc gcccggatgt
      841 ccggccgctg acgcacgagg gcggacggca cgctgaccgg caggctgtcc ggcagcgcca
      901 gggcgtcgag atgaaagtcg ggcggcgtgg cgtcgcccgg cggcttaccg gtcaggaccg
      961 cgatcgcgtt gcgatccacc gccgcctgct gacgcaggga cgggagcagg gcgcgatcgg
     1021 cggccagctg gctacgcgcc gcatcaaggt cggcgatggt cttgaggcgc aacccgaaca
     1081 accgatcgac catctgcacg gtctgctcgt cgtcgcgcag cacctcctcg agcgcgccga
     1141 tctggtcctg cgcgcgggcc aggtcgatcg cccggcgcgc cacgtcgccg gtgatggcca
     1201 ggcccgcggc gtcgagctgg tagcgttggt gctcggtcag ggcatgtttc tgctcgcgca
     1261 gccggcgcgc gccgccgaat atgtccaggg cataggtgac gcccgggccg agggtgaagt
     1321 cgttggtgat cgggccgagc tggtcgatac cctcgggcaa aaggctggtc ttgagccgcg
     1381 acgccgtggc cgcgaaatcc acctgtgggt aggcgccgcc ccgcgtccgc gcctccgcct
     1441 cgcgcgcttg caccagcgtg gcgcgcaccg cggcgagcga ctggttgttg gccagcgcct
     1501 cgcggaccag ggtgtcgagc tgcggcgaat gaaacgccgt ccaccagtcg tccgccagcg
     1561 gctggccgaa cgccagggtc tgacgaattt cagctcggcc gggatcggaa agcgtcggcg
     1621 accggtcggc cacataggcc tgcgccgagg gcgcggcggg ttgcttgaag tcgggcccca
     1681 ccgtgcaacc ggcgagccag accgcggcca ggccggcgcc ggcggcgcag cggattcgcc
     1741 agcggcgcgt ggaggcgccc gcctgtcggc cctggatcac gcggcgaccg cgccatgggc
     1801 cgcgaaatgg cgccgccagg ccgcgatgga tccttgatcg ccgccttggc gatccttgag
     1861 agccgcgagc agcgaaggtc gggccgcgat ggctgtcccg caatccagcg ccagcaggtt
     1921 cagctcgtcg ggccctccaa ggcgatcgaa gacggcgcgg ttgaaagcct gggcgccgcc
     1981 ggcccccgct tccacgggcc agatcagctg ggcgccggcc aggatcatcg cattggccag
     2041 gatgtcggcc tcgttgacgc cgtcgccggc aagttcgccc agccggcgcg gccccttggc
     2101 gagcgtgctc accatccggc gcgcgacagg gttgtcgaac ttgatctctc cggccggggt
     2161 cctgacgctg tacgccgtct tggccttggg ggccgccagg gcgaagggcg tgtccagcag
     2221 ccgccggcgc cgcacagcct cgctgatccg gacgccgtcg cgaacgaaga cgtcccgccg
     2281 aaagctctgg ttggtcagat agtcccgcac cagctcatgc aggtcgggat cgtccacctt
     2341 ggcaagcagt ttccgcgcgg ccttgcccag cacgaagtcg tcgaaattct cgatcagcga
     2401 ggccgagccg gccggttcca ggtcgatctc cgccatgtcc gcgcgtacgt cgagcacgct
     2461 cagcggccgc cagttcgcgc ccatcagctc gtgcgccagg tagcgttcgt tgggcgccgc
     2521 gccgcgggcg agcaggacct gcgccatacg gctggccgtc agcgccgggg tcttcatcgc
     2581 cagaagtttc gcagccaggc gtccggcttc ccgcacccgc gcggcgctgt cgcccgaccc
     2641 acgctggccc agctcaagca tgagccgctg gaacggcgca tcgggcgcac ggccggggag
     2701 ggcgttgtaa ctgacgtaga cccgcccgcc cggcttcaga tggcgatcga cgaaacggcg
     2761 cagatcccgc cgcgcccggt cgtcgaccca gctgtagacc ccgtgcgcgg tgatgtagtc
     2821 gagcggcggc aggtcgagat cgacggcggc gccgaaatcg gcggcgtgga agaccgcgtt
     2881 cccggccccc gcggccttcg ccagcccgcg ggcatggtcg atgtgctcgg ccaggaaatc
     2941 gatgccgtgg aactggccgc tcgggtgggt cgcggcgaag acggccgcat tgacgccctg
     3001 gccgcaaccc agatcgcacc aggcgaagcc gcccgttcga tcgacgggtt cgaaacccca
     3061 caacaggccg gtgaaatcga gccaggccgg cgacagctcc gggatgaagc cgcgcacata
     3121 ggccacatca tccacatacc ggctggcggc tcggctcgat cccatgatgg ttccgtcagg
     3181 cgccacgagg gcggccggcg tcggcgccgc cgccagtcgc ctcccggact aggcctcgtc
     3241 cagactcaga ttttgagctt caggggc
//
LOCUS       DATAJL010000079         2002 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14298,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000079 DATAJL010000000
VERSION     DATAJL010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14298"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(116..994)
                     /gene="aguB"
                     /locus_tag="VHN39_01470"
     CDS             complement(116..994)
                     /gene="aguB"
                     /locus_tag="VHN39_01470"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0050126 - N-carbamoylputrescine amidase
                     activity [Evidence IEA];
                     GO_process: GO:0009446 - putrescine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidase"
                     /protein_id="HEX2815034.1"
                     /translation="MTRKITVAAIQASFGMDLAANIARTADLIREAADKGAQVILPPE
                     LFQGPYFCVAQEERWFKEAHPWKEHPCVAALAPLAAELGVVLPISIFEREGPHYFNSL
                     VMADADGSLLGVYRKSHIPDGPGYMEKYYFRPGDTGFKVWDTRFGRLGVGICWDQWYP
                     EAARAMALMGAEVLLYPTAIGSEPHDATLDTAAPWRRAMQGHAVSNVIPVVGANRTGF
                     EPWENYPNGGQSFYGSSFIADHRGDLVADFGREDQGVLSADFDLDFLATHRAAWGFFR
                     DRRPDLYGALTQGRPQ"
     gene            complement(994..1998)
                     /locus_tag="VHN39_01475"
     CDS             complement(994..1998)
                     /locus_tag="VHN39_01475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEX2815035.1"
                     /translation="MTVTVPAEWAPHRAMWLGFPSHAELWEDDLPAAQAEVAALARAL
                     AGPGAERVRLMTGTAEGADEARRLLGEAAEVEIVTGVFGDIWLRDTGPIFALGPQGLV
                     AQGFRFNGWGGKYQLPHDDTVAGQIAAAAGAPLNEFGFILEGGALDHDGEGTVLTTGQ
                     CLLNSNRNPGWSQADAEAALAEALGAKTVLWLGEGLENDHTDGHVDNLARFVAPGVVA
                     CPVAYGRGDPNAQAYDDAARRLGDMTDAAGRKLQVMRIPSPGWIDGPDRKAAPASHMN
                     FLIANRAVIVPIYAETPGAFAVQALEHLFPGHQVIGLPSRAILTGGGSFHCITQQEPA
                     "
BASE COUNT          299 a          697 c          709 g          297 t
ORIGIN      
        1 cccgccgagc cattggccga cctccgggtc gaccatgatg tccgcgtagg gctcgaggtc
       61 cgcgtcgcgc cagacccgca ggatcagccg gtccgtctcg atcatgccca tgctctcatt
      121 ggggccggcc ctgagtgagc gcgccataga ggtcgggtcg ccggtcgcgg aagaagcccc
      181 aggcggcgcg gtgagtggcc aggaagtcga ggtcgaagtc ggcgctcagc acaccctgat
      241 cctcgcgccc aaagtcggcc acgaggtcac cacggtggtc agcgatgaag ctcgagccat
      301 agaagctctg gccgccgttc ggatagttct cccagggctc gaagccggtg cggtttgcgc
      361 ccaccaccgg gatcacattg gagaccgcgt ggccctgcat ggcgcgccgc cagggggccg
      421 cggtgtcgag ggtggcgtcg tgcggctccg agccgatggc ggtgggatag agcagcacct
      481 cggcccccat cagcgccatg gcgcgggccg cctccgggta ccactggtcc cagcagatgc
      541 cgacgccgag ccggccgaag cgggtgtccc agaccttgaa gccggtgtcg ccgggccgga
      601 aatagtactt ctccatatat ccggggccgt cggggatatg gctcttgcgg tagacgccca
      661 ggaggcttcc gtcggcgtcg gccatcacca ggctgttgaa gtagtgcggc ccctcgcgct
      721 cgaagatcga gatcggcagg acgacgccaa gctcggccgc cagcggcgcc agcgccgcga
      781 cgcaagggtg ctccttccac ggatgagcct ccttgaacca gcgctcctcc tgggcgacgc
      841 agaaataggg gccctggaac agctccggcg gcaggatcac ctgggcgccc ttgtccgcgg
      901 cctcgcggat caggtcggcc gtgcgggcga tattggcggc gaggtccatg ccgaaggacg
      961 cctggatcgc cgcgactgtg atcttgcggg tcatcaggcg ggctcctgct gggtgatgca
     1021 gtggaaggat ccgccaccgg tgaggatggc ccgtgacgga aggccgatca cctgatggcc
     1081 cgggaaaagg tgctccagcg cctggacggc gaacgccccc ggcgtttcgg cgtagatggg
     1141 cacgatcacg gcccgattgg cgatcaggaa attcatgtgg ctggcggggg cggccttgcg
     1201 gtccggtccg tcgatccagc cgggcgaggg aatgcgcatg acctgcagct tgcggcccgc
     1261 cgcatcggtc atgtcgccca gccgccgggc cgcgtcgtca taggcctggg cgttgggatc
     1321 gccccgcccg taggccaccg gacaggcgac gacgcccggg gccacgaagc gcgccaggtt
     1381 gtccacgtgg ccgtcggtgt ggtcgttctc cagcccctcg cccagccaga gcaccgtctt
     1441 cgcgcccaat gcctcggcca gggcggcctc cgcgtcggcc tggctccagc ccggattgcg
     1501 gttggaattc agcaggcact ggccggtggt cagcaccgtg ccctcaccgt cgtgatccag
     1561 cgccccgcct tccaggatga agccgaactc attgagcggc gcgccggctg ccgcggcgat
     1621 ctggccggcc accgtgtcgt cgtgcggcaa ctggtatttg ccgccccagc cgttgaagcg
     1681 gaacccttgt gccaccagcc cctgcgggcc caaggcgaag atcgggccgg tgtccctgag
     1741 ccagatgtcg ccgaagacgc cggtgacgat ctcgacctcg gccgcctcgc ccagcagccg
     1801 ccgggcctcg tccgcgccct cagccgtgcc ggtcatcagc cgcacgcgct cggcgccagg
     1861 gccggccagc gcgcgggcaa gcgccgccac ctcggcctgg gcggcgggca ggtcgtcctc
     1921 ccacagctcc gcatggctgg ggaagcccag ccacatggcc cggtggggcg cccactcggc
     1981 gggaacggtg acggtcatgg aa
//
LOCUS       DATAJL010000080         3012 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27198,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000080 DATAJL010000000
VERSION     DATAJL010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27198"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..566
                     /locus_tag="VHN39_01480"
     CDS             <1..566
                     /locus_tag="VHN39_01480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815036.1"
                     /translation="KTTVLIAAAVLAMGATKPAAPKPTAAKAPPAATKAAPAKPVVSP
                     VADFDARNPASVMAVLNSSGGKASLLQKDTDTVLLTFASLAANFSLQFDACDAQGRAC
                     KAVEFDSIVDTPGPSFAQLNAFNQSSAMCRGYEDKSGKPHIVYSTLLFADDPYEHFRT
                     EIAAWTGCIGEFRNFLKDPNGYLASAP"
     gene            complement(563..1540)
                     /locus_tag="VHN39_01485"
     CDS             complement(563..1540)
                     /locus_tag="VHN39_01485"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HEX2815037.1"
                     /translation="MTLHTKLCDLLGVEHPIMLAGMGGVSYAELVAAVSNAGGYGVLG
                     MAGRSPDFIRDEMRKVKTLTDKPFGVDLLAASPDSLTASVEIICEEGASSFVAGLGVP
                     MPIMERLKKSGLKVMVVCGAVKHAVKAEQAGCDAVICQGGEGGGHTGLVGTLPLVAQA
                     VEAVKIPVVAAGGLYDGRGLAAALSLGAVGVWMGTRFIASQEAHAGQMYRDVIVEATD
                     EDTIRTRSYSGKPMRVKKNPYVEEWESRPGDIQPFPQQAILSSRAGVMGGIGGQIEGL
                     DADRSAFAMGQSAGGIHDIPSAGDIVRRIMAEAEAAIDRVSKLRAKASA"
     gene            complement(1553..2338)
                     /locus_tag="VHN39_01490"
     CDS             complement(1553..2338)
                     /locus_tag="VHN39_01490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2815038.1"
                     /translation="MAYKPFDLTGKVALVTGGNSGIGLGMADAMAQAGADLVIWGTNA
                     DKNAAAEAQLKAHGRRVMTQKIDVADEHAVTAGMAEAIAKMGRVDTVIANAGVGGGAP
                     SFSEFSTEQYRRVLSVNLDGVFFTFREACKHMVARAASGDKAGGSLVVTSSLSAIDGA
                     ARNEAYASTKGAVISMIRAIAVEHARYGVRANAILPGWIATDMTAGAQGNDKFNDAVI
                     KRVPFRRWGEPEDFGGMAVYLASDASSFHTGDSFLIDGGYAIF"
     gene            complement(2364..>3012)
                     /locus_tag="VHN39_01495"
     CDS             complement(2364..>3012)
                     /locus_tag="VHN39_01495"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HEX2815039.1"
                     /translation="RAELERASGVRVLYHGADMTRGEEIADMVAFANDAFGRLDILVN
                     NAGIQFVGPVDEYPEEKWDALIAVILSSTFHATKAAIPIMKGQGRGRIVNIASAHGLV
                     ASAFKAPYVAAKFGVVGFTKACAVELARTGITVNCICPGYVKTPLIEAQVVDQAKARG
                     IPEDRVIEDVILAAQPNKTFVQYGHLAGQLLYLVSDQGASATGGSFVIDGGWTAQ"
BASE COUNT          456 a         1089 c          972 g          495 t
ORIGIN      
        1 gtaagaccac agtcctgatc gccgccgctg tgctcgcgat gggcgcgacc aagcccgccg
       61 cacccaagcc caccgcggcc aaggccccgc ccgccgccac aaaggccgcg cccgccaagc
      121 ccgtcgtctc gccggtcgcc gacttcgacg cgcgcaatcc ggccagcgtg atggccgtgc
      181 tgaactccag cggcggcaag gcgagcctcc tgcagaagga caccgacacg gtgctcctga
      241 cctttgcctc gctggcggcg aatttcagcc tgcagttcga cgcctgtgac gcccagggcc
      301 gagcctgcaa ggcggtcgag ttcgattcca tcgtcgacac gccgggcccg agcttcgccc
      361 agctcaacgc cttcaaccag tcctcggcca tgtgccgcgg ctacgaggac aagtccggca
      421 agccgcacat cgtgtattca accctgctgt tcgccgacga cccttacgag cacttccgca
      481 ccgagatcgc cgcctggacc ggctgcatcg gcgagttccg gaacttcctc aaggatccca
      541 acggttacct ggcgtccgcc ccctaggcgg aagccttggc ccgcagtttc gagacccgat
      601 cgatcgccgc ctcggcctcg gccattatcc gccgcacgat gtcgccggcg gaggggatgt
      661 cgtggatgcc gcccgccgac tggcccatgg cgaaggccga gcggtcggcg tcgaggcctt
      721 cgatctggcc gccgatgccg cccatgacgc cggcgcggct cgacaggatc gcctgttgcg
      781 ggaagggctg gatgtcgccg gggcggctct cccactcctc gacatagggg ttcttcttca
      841 cccgcatggg tttgccggaa tagctgcggg tgcggatggt gtcctcgtcc gtcgcctcga
      901 caatcacgtc gcggtacatc tggccggcgt gggcctcctg gctggcgatg aaccgcgtgc
      961 ccatccagac ccccacggcg ccaaggctca acgccgcagc cagaccgcgc ccgtcataga
     1021 gcccgcccgc ggccaccacc gggatcttca ccgcctccac cgcctgggcc accagcggca
     1081 gggtgccgac caggcccgtg tgcccgccgc cctcgccgcc ctggcagatc accgcgtcgc
     1141 agccggcctg ctcggccttc accgcgtgct tcaccgcccc gcagaccacc atgaccttta
     1201 agcccgactt cttcagccgc tccatgatcg gcatgggcac gcccaggccc gccacaaacg
     1261 aggacgcccc ctcttcgcag atgatctcca ccgaggcggt caagctgtcg ggactggcgg
     1321 ccaggaggtc gacgccgaag ggcttgtcgg tgagcgtttt caccttgcgc atctcgtcgc
     1381 ggatgaagtc gggcgagcgg ccggccatgc ccagcacgcc gtagccgccg gcgttggaga
     1441 ccgcggccac cagctcggcg taggaaaccc cgcccatgcc ggccagcatg atcgggtgtt
     1501 cgacgcccag gaggtcgcag agcttggtgt gcagggtcat ggggtttctc tctcagaaga
     1561 tcgcgtaacc gccgtcgatc aggaagctgt cgccggtgtg gaagctggag gcgtcggagg
     1621 ccagatagac cgccatgccg ccgaaatcct ccggctcgcc ccatcggcgg aagggcacac
     1681 gcttgatcac cgcgtcgttg aacttgtcgt tgccctgcgc gccggcggtc atgtcggtgg
     1741 cgatccagcc cggcaggatg gcgttggccc gcaccccata gcgggcgtgc tccacggcga
     1801 tggcccggat catcgagatc accgcgccct tggtcgacgc gtaggcctcg ttgcgcgcgg
     1861 ccccgtcgat ggcgctgagc gaagaggtga ccaccagcga gccgccggcc ttgtcgcctg
     1921 aggccgcgcg ggcgaccatg tgcttgcagg cctcgcggaa ggtgaagaac accccgtcca
     1981 ggttcaccga caggacccga cggtactgct cggtggagaa ctccgagaac gacggggctc
     2041 cgcctccgac gccggcgttg gcgatcacgg tgtccacccg gcccatcttg gcgatggcct
     2101 cggccatgcc ggcggtcacc gcatgctcgt cggccacgtc gatcttctgg gtcatcaccc
     2161 ggcgcccatg ggccttgagc tgggcttccg ccgcggcgtt cttgtcggcg tttgtgcccc
     2221 agatcacaag gtccgcgccg gcctgggcca tggcgtcggc catgccgagc ccgatgccgc
     2281 tgttgccgcc ggtgaccagc gccacctttc ccgtcaggtc gaacggcttg taggccatga
     2341 ccgcatcctc ccctgtttcg ttgttattgg gcggtccagc cgccgtcgat cacgaaggac
     2401 ccgccggtgg ccgaggcgcc ctggtcggag accagataga gcagctggcc ggccagatgg
     2461 ccgtattgca cgaaggtctt gttgggctgg gcggcaagga tcacgtcctc gatcacccgg
     2521 tcctccggga tgccgcgcgc cttggcctgg tcgaccacct gggcctcgat cagtggcgtc
     2581 ttcacatagc ccgggcagat gcagttgacc gtgatgccgg tcctggccag ctccaccgcg
     2641 caggccttgg tgaaaccgac gacgccgaac ttggcggcca catagggcgc cttgaacgcc
     2701 gaggcgacca ggccgtgggc cgaggcgatg ttgacgatcc gcccgcgccc ctggcccttc
     2761 atgatcggaa tcgcggcctt ggtggcgtgg aaggtcgacg acaggatcac cgcgatcaga
     2821 gcgtcccact tctcttccgg atattcgtcc accggcccca cgaactggat gccggcgttg
     2881 ttcaccagga tgtcgaggcg gccgaacgcg tcgttggcga aggccaccat gtcggcgatc
     2941 tcctcgccgc gggtcatgtc ggcgccgtgg tagaggacgc ggaccccgct cgccctttcc
     3001 agttctgcgc gc
//
LOCUS       DATAJL010000081         2114 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_103737,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000081 DATAJL010000000
VERSION     DATAJL010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103737"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..276)
                     /locus_tag="VHN39_01500"
     CDS             complement(<1..276)
                     /locus_tag="VHN39_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HEX2815040.1"
                     /translation="MSRETDDLELVEKPEIEEDLEDLALGEDYSLNPAYVPMVVDALD
                     RGDAERLRELLGALHPADVADLMGFLSADDREELVPHLDPEILGEVLS"
     gene            complement(341..425)
                     /locus_tag="VHN39_01505"
     tRNA            complement(341..425)
                     /locus_tag="VHN39_01505"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(389..391),aa:Leu,seq:gag)
     gene            complement(502..768)
                     /locus_tag="VHN39_01510"
     CDS             complement(502..768)
                     /locus_tag="VHN39_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliM/FliN family flagellar motor switch protein"
                     /protein_id="HEX2815041.1"
                     /translation="MGRPSVSQVKAVNVEIQVVLGRSTLPMQQLLRMGRGAVIPLDTA
                     VNDEVWILANNHPIARGEIQINDEKISIAVTRAANVYDFMAGGQ"
     gene            821..1546
                     /gene="lipB"
                     /locus_tag="VHN39_01515"
     CDS             821..1546
                     /gene="lipB"
                     /locus_tag="VHN39_01515"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517631.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033819 - lipoyl(octanoyl) transferase
                     activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HEX2815042.1"
                     /translation="MLDRVLNPATNAPIFGRSDNSPAGWAVSKAPVAYLDAVAAMEAR
                     AAAIAEGRAGELVWLLEHPPLYTAGVSAKSGDLLEPDRFPVFESGRGGQYTYHGPGQR
                     VAYAMLDLTRRRRDVRAFVAALEAWVIGALGRFNVAGEVRQGRVGVWVERRTPGLAPR
                     EDKIAAIGVKLRRWVSFHGISLNVEPDLSHFSGIIPCGVTEHGVTSLVDLGLPVSMDE
                     ADAALRASFAEVFGAVADAAAPI"
     gene            1592..>2114
                     /locus_tag="VHN39_01520"
     CDS             1592..>2114
                     /locus_tag="VHN39_01520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815043.1"
                     /translation="MSGYLSKIAKRRLAGLGLAAAVAACAASASGQTGPITYPPSRSL
                     GDVAAWLQRDTPLAPSQIVDISPQAVTAVTSASPMAETRGFLANISSEAIDPEMLAHD
                     GIASWSIPVEVDCEKRSVRLGIMTGYRSRDLRSDARVVRDADTAWVTPSPIAPLGSVI
                     KALCDRDFHRPLIG"
BASE COUNT          326 a          701 c          716 g          371 t
ORIGIN      
        1 ggagagcacc tcacccagaa tctcggggtc cagatgcggg accagctcct cgcggtcgtc
       61 agccgagagg aagcccatca ggtcggcgac gtcggccggg tgcagggcgc ccaggagttc
      121 gcgcagccgt tcggcatcgc cgcggtcgag cgcgtcgacg accatcggga cgtaggccgg
      181 atttagggaa tagtcctcgc caagggcaag gtcttccagg tcttcttcga tctcaggttt
      241 ttcgacaagc tccaggtcgt ccgtttcgcg actcatggcg gacctccctg gcttgtatcg
      301 aagcgctatt ttcctgagat tttctaaagc cttgcttcac tggtgcggtc gagaagactc
      361 gaacttccac gggttgcccc acagcgacct caacgctgcg cgtctaccaa ttccgccacg
      421 accgctcgtg gtgaggcgcg gggggtagca aacgctgaca gctttgtgaa gggcggcggt
      481 tcgccagccc gagagatcgg tctactggcc gccggccatg aagtcgtaga cgttggcggc
      541 gcgggtcacc gcgatggaga ttttctcgtc gtttatctgg atttcgccgc gggcgatcgg
      601 gtggttgttg gccaggatcc agacctcgtc attgaccgcg gtgtcgagcg ggatcaccgc
      661 gccacggccc atgcgcagca gctgctgcat gggaagcgtc gagcgcccca gcacaacctg
      721 aatctcgaca ttaacagcct tgacctgact cacggatgga cgccccaaac ttcacccggg
      781 ctttgcactc ggctagccca gcgcccacat tggccgcgac atgcttgacc gggtgttaaa
      841 tccagcgaca aacgcgccga ttttcggccg cagcgacaat tcgccggccg gttgggcggt
      901 ttcgaaggcg ccggtcgcct atctggacgc cgtcgcggcc atggaggccc gcgccgccgc
      961 gatcgccgag ggccgcgcag gcgagctcgt ctggctgctg gagcacccgc cgctctatac
     1021 cgccggtgtt tcagccaagt ccggcgattt gctggagccc gaccgcttcc cggtgttcga
     1081 gagcggccgc ggcgggcaat acacttatca cggccccggt cagcgggtgg cctacgccat
     1141 gctggacctc acccggcggc gaagggacgt gcgagccttc gtggcggcgc tcgaggcctg
     1201 ggttatcggc gccctggggc ggttcaatgt cgcaggcgag gtccggcaag ggcgcgtagg
     1261 cgtctgggtc gagcgccgca cgccgggcct ggcgccccgc gaggacaaga tcgccgccat
     1321 cggcgtgaag ctgcgccgct gggtctcgtt ccacgggatt tcgctgaacg tcgagccgga
     1381 cctgagccat ttcagcggca tcatcccctg cggcgtcacc gagcacgggg tgaccagcct
     1441 ggtggatctg gggctgcccg tcagcatgga cgaggccgac gccgccctgc gggccagctt
     1501 cgccgaagtg ttcggcgcgg tggcggacgc cgccgcgccg atttaggagg taccttcacg
     1561 aaaccggcga gtcggtgtgt ttgaggcctt gatgtccggc tatctcagca aaatcgccaa
     1621 acgccgcctg gcaggcctgg gtctggccgc cgctgttgcg gcctgcgccg cgtcggcctc
     1681 gggccagacg gggcccatca cctatccgcc gtcgcgctcg ctgggcgacg tggcggcctg
     1741 gctgcagcgg gatacgccgc tggcgcccag ccagattgtc gacatcagcc cccaggcggt
     1801 gacggcggtg acttcggcct cgcccatggc cgagacacgg ggcttcctgg ccaacatcag
     1861 ctcggaggcg attgatccgg agatgctggc ccacgacggc atcgcatcct ggtccattcc
     1921 ggtggaggtc gattgcgaga aacgttcggt gcggctgggg atcatgaccg gctatcgcag
     1981 ccgcgacctg cgcagcgacg cccgcgtcgt gcgcgacgcc gacaccgcct gggtgacgcc
     2041 ctcgcctatc gcgccgctcg gctcggtgat caaggcgctg tgcgacaggg acttccaccg
     2101 cccgctgatc ggcc
//
LOCUS       DATAJL010000082         2152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14324,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000082 DATAJL010000000
VERSION     DATAJL010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14324"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VHN39_01525"
     CDS             <1..196
                     /locus_tag="VHN39_01525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815044.1"
                     /translation="ERGAGGDQGIAEFHLVLNSVRRLLTKERRMINFSKLDDVLDPEM
                     KHTTTPCIHQPQVTDHIRNY"
     gene            complement(432..1403)
                     /locus_tag="VHN39_01530"
     CDS             complement(432..1403)
                     /locus_tag="VHN39_01530"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815045.1"
                     /translation="MKDFAGKFAVVTGGGTGMGRELARQLIAEGCSVAMCDVSARNMA
                     ETIALCEADGVPQGARITAHLADVSDEAQLIAFRDAAAAQHDTDRLHLLFNNAGIGGG
                     GSMIADDRADWERTFNVCWGGVYFGVRTFLPMLQAADEAHIINTSSVNGFWASLGPNV
                     SHTAYAAAKFAVKGFSEALITDLKLNAPHIKVSVVMPGHIGTSIVVNSRKVMTGRDED
                     ALSQTDLEQARVRIGRMGIDVSELPDAALQAMVDEQARRFLEDAPTTAAAAATVILDG
                     VKAERWRILVGEDAQKLDAAVRADPEAAYSPEFYEAMIKEMGWRLGR"
     gene            1532..2128
                     /gene="gstA"
                     /locus_tag="VHN39_01535"
     CDS             1532..2128
                     /gene="gstA"
                     /locus_tag="VHN39_01535"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003450988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HEX2815046.1"
                     /translation="MKLYLAPGACSLADHIAMHEAGLAFDRVTVDMKTKRTDDGRDFL
                     QINPKGYVPALEFDDGEVLTENIAILSVVADKAPQLTPEGRFGQFRLLEMLAFISTEI
                     HKGFKPFFKPDSTEAEKKSAGETLGKRFGYLAERMKGDYLFGSRFTVADAYLFTVTSW
                     AHHVKVDLSAFPNLLAFQKRVAARPAVQAAMKAEGLIK"
BASE COUNT          369 a          721 c          694 g          368 t
ORIGIN      
        1 cgagcgcgga gccggcggcg atcaaggtat tgcggagttt catcttgtcc tcaactcggt
       61 gcgtcgcctc ttaaccaagg agaggcgaat gattaatttt tccaagctgg acgatgtgct
      121 tgatcccgaa atgaaacaca cgaccacgcc ttgcatccat caaccgcaag tcacggacca
      181 cattaggaat tactgagttt ctcagctcgc attggttgca gacgcgcgct gacgtcgcag
      241 gtgattgatc gttaacagta aagcttaacc cgagaatcct ctcgcgcggc ctgcattgga
      301 ccgcaccggg ctgcgctttt ttgcgtcaag ccggccgccg cggaatgaag cgtcggccat
      361 gggccgcgca ggcgtgacat gggtctcgaa agaggacgac gccgcccagc aggagccggg
      421 cggcaggtga gctagcggcc gagccgccag cccatctcct tgatcatggc ctcatagaac
      481 tcggggctat aggcggcctc ggggtccgcg cggaccgcgg cgtccagctt ctgcgcgtcc
      541 tcgcccacca gaatccgcca gcgctcggcc ttgaccccgt cgaggatgac agtggcggcg
      601 gccgcggcgg tcgtcggcgc gtcctccaga aagcggcggg cctgctcgtc gaccatggcc
      661 tgcagggccg cgtccggcag ctcactgacg tcgatcccca tgcggccgat gcggacccgc
      721 gcttgttcca ggtcggtctg gctgagcgcg tcctcgtcgc ggccggtcat caccttgcgg
      781 gaattgacga cgatcgaggt gccgatgtgg cccggcatca ccaccgagac cttgatatgc
      841 ggggcattga gcttcagatc ggtgatcagc gcctcggaga accccttcac ggcgaacttg
      901 gccgccgcat aggctgtgtg gctgacattg gggccgaggc tcgcccagaa gccgttgacg
      961 ctggaggtgt tgatgatgtg cgcctcgtcg gccgcctgca gcatgggcag gaaggtccgc
     1021 accccgaaat agaccccgcc ccaacagacg ttgaaggtcc gctcccagtc ggcccggtcg
     1081 tcggcgatca tcgagccgcc tccgccaatg ccggcgttgt tgaagaggag gtgcagccgg
     1141 tcggtgtcgt gctgcgccgc cgccgcgtca cggaaggcga tcagctgggc ctcgtcggag
     1201 acatcggcca agtgggcggt gatccgcgcg ccctgcggaa ccccgtcggc ttcgcacagc
     1261 gcgatggtct cggccatatt gcgcgccgag acgtcgcaca tggccacgct gcagccctcg
     1321 gcgatcagct gtcgggcgag ctcgcgcccc atgccggtgc cgccgccggt gaccacggcg
     1381 aatttgcccg cgaaatcctt catgcgcgtt ccccttgtcg ttgacgccag cttggccccg
     1441 cgtccggcgg gcgtccaccg tgacgccggg gaacgacaac tggacgccgc gggtttgtct
     1501 ggcctcagcc cacccgaagg gacatcccgc catgaagctc tatctcgccc ccggcgcctg
     1561 cagcctcgcc gaccacatcg cgatgcacga ggccggcctc gccttcgacc gggtgacggt
     1621 cgacatgaag accaagcgca ctgatgacgg ccgcgacttc ctccagatca atcccaaggg
     1681 ctatgtgccg gcgctcgagt tcgacgacgg cgaggtgctg accgagaaca tcgccatcct
     1741 gagcgtggtc gccgacaagg cgccgcaact gacgcccgaa ggccgtttcg gccagttccg
     1801 gctcctggag atgctggcct tcatctcgac cgagattcac aagggcttca aacccttctt
     1861 caagcccgac tccacggagg ctgaaaagaa gagcgccggc gagacgctcg gcaagcggtt
     1921 cggctatctc gcggaacgca tgaagggcga ctacctgttt ggctcgcgct tcacggtggc
     1981 cgacgcctac ctcttcaccg tcaccagctg ggcgcatcac gtgaaggtcg acctgtcggc
     2041 cttcccgaac ctcctcgcat tccagaagcg cgtggcggcg cgccccgcgg tgcaggcggc
     2101 gatgaaggcc gaggggctca tcaagtaggg ccctcgaggg gctgacgggg ct
//
LOCUS       DATAJL010000083         3602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_1412,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000083 DATAJL010000000
VERSION     DATAJL010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1412"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..169)
                     /locus_tag="VHN39_01540"
     CDS             complement(<1..169)
                     /locus_tag="VHN39_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEX2815047.1"
                     /translation="MSRPFLKMNGLGNDFVVVEARSAPFEPSAAAVRAIADRTSGVGC
                     DQLIVIEPPSPE"
     gene            289..2364
                     /locus_tag="VHN39_01545"
     CDS             289..2364
                     /locus_tag="VHN39_01545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2815048.1"
                     /translation="MKALLIALAALGLAAPVVHAQTPPAADPYQWLEDIDSARSMAWV
                     EGQNVKSAKRLESDPRYETFHAEARAIFTAKDRIAMPRFRAGGIDNFWQDAAHVHGIW
                     RHTTEASYKTASPQWETLLDLDALSKAEGKNWIWKGANCLKPAQTLCLVHLSNGGSDA
                     VEDREFDTTTGKFVEGGFRFPNGKQNVSWIDHDTLIVSREWAPGEVTTSGYPYVVKIV
                     KRGAEPREVFRGAKTDVQDGGFVLEGDKGADGVIITHGLTFYEREFSLLTDKGLVAIP
                     LPKKAEEGTYVDGQLAFVIKADWKTFKAGAVISYDLADLKRDAATAKPQLVFQPTAHD
                     AIQRVGSTNDRLVIDLLEDVKGAVDVYDHKAGVWLPRRLKLPGNANINIVSESDDTNQ
                     LFATVEGFLDPTALWLADADTGAVAKIKTLPAQFDASKDVVQQFWATSNDGTKIPYFV
                     VHPKGMKLDGSTPTQMFGYGGFELSEPPVYIPQMGKLWLERGGAYVIANIRGGGEFGP
                     AWHEAALREHRQRAFDDFAAVAKDLIARKITSPRRLGIYARSNGGILTTVSMTQHPEL
                     FNAIVIESPLIDMLRYNHLSAGASWMAEYGDPDVPADRAFIEKYSGYQNLKSGVKYPE
                     PYITTNTRDDRVHPGHPRKFAAKMEGMGLPYLYYEQTFGGHANDADPELNARRWARHY
                     VYLAQKLMD"
     gene            complement(2369..2941)
                     /locus_tag="VHN39_01550"
     CDS             complement(2369..2941)
                     /locus_tag="VHN39_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX2815049.1"
                     /translation="MHRHHHFHGGRDEHRGRHPWGGRMGERHGPHGRHRGGRVGRFLE
                     HGDLRFVVLAMIAEQPRHGYELIKELEDRTGGAYRPSPGVIYPTLSLLEDEGFIRPVT
                     GEAGRKLYEATDEGREALAANQAGVDAVFGRMAEAAESSDTTRPRIGRAMSNLGMALG
                     QRLSRRPITPEEIDRIVAMIDDMAVAIEKT"
     gene            complement(3044..>3602)
                     /locus_tag="VHN39_01555"
     CDS             complement(3044..>3602)
                     /locus_tag="VHN39_01555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX2815050.1"
                     /translation="PLLRARFPKLRLYLREDLTQRLIAALKAGQLDAALIALPFDTHG
                     LNWAHVSDDELLAAMPAGHPLARLKSADPQALEQEDIILLEDGHCLREHALAACGLKP
                     PKSASGQESFAATSLPTLVQMVSSGLGVTFLPAMAINAGLTDPASVAVRPIAPGHASR
                     EIVVAWRAGSNRAAEGRLLAEVLRE"
BASE COUNT          632 a         1224 c         1186 g          560 t
ORIGIN      
        1 tttcaggact tgggggctcg atgacgatca gctgatcgca gccgacgccg ctcgtccggt
       61 cggcgatggc gcgcacggcc gccgcgctcg gctcgaacgg cgcgctgcgg gcctcgacca
      121 cgacgaagtc gttgccgagc ccgttcatct tcaggaacgg acggctcatg gcggcggaca
      181 tataggcgaa gagggctcgc gacgcacgtg tgcacgtctg gacgcattgc ggcgtggaaa
      241 tcactctgcg cgagacagct tcgtgccggc gccgctagaa atgccggcat gaaagctctg
      301 cttatcgcgc tcgccgccct cggtctcgcc gcccctgtcg tccacgcgca aacgccaccg
      361 gccgccgatc cctaccagtg gctggaggac atcgactcag cccgatccat ggcctgggtc
      421 gaggggcaga acgtcaagtc ggccaagcgg ctggagagcg acccgcgcta cgagaccttc
      481 cacgccgagg cccgcgcgat cttcaccgcc aaggaccgca tcgccatgcc gcggttcagg
      541 gccggcggca tcgacaactt ctggcaggac gccgcccacg tgcacggcat ctggcggcac
      601 acgaccgagg cttcctacaa gaccgccagt ccccagtggg agaccctgct cgacctcgac
      661 gctctgtcca aggccgaggg caagaactgg atctggaagg gggccaattg cctgaagccg
      721 gcccagacgc tctgcctcgt acacctctcc aacggcggca gcgacgcggt ggaggaccgc
      781 gagttcgaca ccaccaccgg caagttcgtc gagggcggtt tccgctttcc caacggcaag
      841 cagaacgtca gctggatcga ccacgacacc ctgatcgtca gccgcgagtg ggcgcccggg
      901 gaggtcacca cctccggcta tccctatgtg gtcaagatcg tgaagcgcgg cgccgagccc
      961 cgcgaagtgt tccgcggcgc caagaccgac gtgcaggacg gcggcttcgt cctggagggc
     1021 gacaagggcg ctgacggggt gatcatcacc catggcctga ccttctacga acgcgagttc
     1081 agcctgctga ccgacaaggg cctggtcgcc atccccctgc ccaagaaggc cgaggaaggg
     1141 acctatgtcg acggccagct ggccttcgtc atcaaggccg actggaagac cttcaaggcc
     1201 ggcgcggtga tcagctacga cctagccgac ctgaagcgcg acgcggccac ggccaagccg
     1261 cagctggtct tccagcccac ggcgcacgac gccattcagc gggtcggctc caccaatgac
     1321 cggctggtca tcgacctcct ggaagacgtg aagggtgcgg tcgacgtcta cgaccacaag
     1381 gccggcgtct ggctgccgcg ccgcctgaag ctgccgggca acgccaacat caatatcgtc
     1441 agcgagagcg acgacacgaa ccagctgttc gccaccgtcg agggcttcct cgacccgacg
     1501 gccctttggc tcgccgacgc cgacaccggc gcggtggcca agatcaagac cctgccggcc
     1561 cagttcgacg cctcgaagga cgtggtccag cagttctggg ccacctccaa cgacgggacg
     1621 aagatcccct atttcgttgt gcatccgaag gggatgaagc tcgacggctc cacccccacc
     1681 cagatgttcg gctatggcgg cttcgagctc tccgagccgc cggtctacat cccccagatg
     1741 ggcaagctct ggctggagcg cggcggggcc tatgtgatcg ccaatatccg cggcggcggc
     1801 gagttcggcc ccgcctggca cgaggcggcc ctgcgcgagc atcgccagcg cgcctttgac
     1861 gacttcgcag cggtggccaa ggacctgatc gcccggaaga tcacctcgcc ccggcgcctg
     1921 gggatctacg cccgctccaa tggcggcatc ctgaccacgg tctcgatgac ccagcatccg
     1981 gagctgttca acgccatcgt catcgagagc ccgctgatcg acatgctgcg ctacaaccac
     2041 ctgtcggcgg gggcctcgtg gatggcggag tatggcgacc cggacgtgcc ggccgaccgg
     2101 gcgttcatcg agaagtactc gggctatcag aacctgaaat caggggtgaa atacccggag
     2161 ccctacatca ccaccaatac acgggatgac cgggtgcacc cgggccatcc gcgcaagttc
     2221 gccgccaaga tggagggcat gggcctgccc tacctctatt acgagcagac ctttggcggt
     2281 catgccaacg acgccgatcc ggagctcaac gcccgccgct gggccaggca ctacgtctat
     2341 ctggcccaga agctgatgga ctgaccgttc aggtcttttc gatcgccacg gccatgtcgt
     2401 cgatcatggc gacgatgcgg tcgatctctt ccggcgtgat cgggcggcgc gacaggcgct
     2461 gacccaacgc catgccgagg ttgctcatgg cgcggccgat ccgcggacgg gtggtgtcgg
     2521 agctttccgc ggcttcggcc atgcggccga agacggcgtc gacgccggcc tggttggccg
     2581 ccaaagcctc gcggccctca tcggtggcct cgtagagctt gcggccggcc tcgccggtga
     2641 ccgggcggat gaagccctcg tcttccagca gcgacagagt cggatagatc acgccgggcg
     2701 acgggcgata ggccccgccg gtgcggtctt ccagttcctt gatcagttcg tagccgtggc
     2761 gcggctgttc ggcgatcatc gcaaggacca cgaagcgaag gtcgccgtgc tccaggaaac
     2821 gcccgacccg gccgccacga tggcgtccat gaggcccgtg gcgctcgccc atgcggccgc
     2881 cccagggatg acggccgcgg tgctcgtccc ggccgccgtg aaagtgatgg tgtctgtgca
     2941 tatcaatagc cccctccttt ggtggggcga ctatcgatat atctaaaccg gatcggagat
     3001 gcaagcatat ttcgatatgt ctaaattggt ctatcgataa ccgtcactcc cggagcacct
     3061 cggccaacag ccggccctcg gcggcgcggt tggagccggc gcgccaggcg acgacgatct
     3121 cgcggctggc gtggcctggc gcgatgggcc tgaccgcaac cgaggccgga tcggtgagcc
     3181 cggcgttgat cgccatggcc ggcaggaagg tgacgccgag gcccgacgag accatctgca
     3241 ccagggtcgg cagcgaggtg gcggcgaagg actcctgtcc cgaggcgctc ttgggcggct
     3301 tgaggccgca agcggcgagg gcgtgttcgc gcaggcagtg gccgtcttcc agcaggatga
     3361 tatcctcctg ctcaagcgcc tggggatcgg ccgatttcag cctggccagc ggatggccgg
     3421 ccggcatggc ggccagcagc tcgtcatcgg agacgtgagc ccagttcagc ccgtgcgtgt
     3481 cgaagggcag cgcgatcagc gccgcgtcca gctggccggc cttcagcgcc gcgatcagcc
     3541 gttgggtgag gtcttcgcgc aggtagagac gcagcttcgg gaaccgcgcg cgcagcagcg
     3601 gc
//
LOCUS       DATAJL010000084         6079 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27217,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000084 DATAJL010000000
VERSION     DATAJL010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6079
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27217"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VHN39_01560"
     CDS             <1..901
                     /locus_tag="VHN39_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="formylglycine-generating enzyme family protein"
                     /protein_id="HEX2815051.1"
                     /translation="AMRPEEGPERSTRVGSFWIDRTEVTNADFARFVKATGYVTLAER
                     PLDPKAYPQLSGDQLKPSGIVFAGSDHAAGDDPGQWWRVVQGADWRHPEGPGSSIAGK
                     AKLPVVQVGWDDAMAYARWLGRDLPTEAEWEYAAQGGRGATRFVWGDEALDDAHPQAN
                     VWQGIFPVMDSGADGYKARAAPVGCFPPNGYGLYDMAGNVWEWAKDWYRPNLDGAAAD
                     NPAGPRETVAFDPGDPGARKHVIKGGSFLCSPNYCYRYRPAAREPGPTDTGENHIGFR
                     TVLRVSGAGAASAEGRSGAPDPR"
     gene            complement(1386..1802)
                     /locus_tag="VHN39_01565"
     CDS             complement(1386..1802)
                     /locus_tag="VHN39_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HEX2815052.1"
                     /translation="MQVINEVMPDMARAMAFFGAAEDGPFVMVNLLKFKPRAEYADGT
                     DSHLTGAQAYARYGEEVRKLVEGLGGKVRYSGEVTGLMIGEVEELWDMVALAEYPSLA
                     AFREMAMSPAMHAIEHHRKAGLAGQLNIRTKPGAGF"
     gene            complement(1802..2716)
                     /locus_tag="VHN39_01570"
     CDS             complement(1802..2716)
                     /locus_tag="VHN39_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloalkane dehalogenase"
                     /protein_id="HEX2815053.1"
                     /translation="MKVLRTPDERFAGLADWPFAPHYATVVDADGTALRLHYVDEGPA
                     NAAPVLLLHGEPSWSYLYRKIIADLLAKGHRVIAPDLIGFGRSDKPAERGDYTYERHV
                     AWMSQWLLQTELTDITLFCQDWGGLIGLRLVAAFPEIFAGVVIGNTGLPAGTGMSEGF
                     KAWLDFSQAVPQMPIGVIVNGGTGRNLSDAEIAAYDAPFPDESYKEGARQFPMLVPVS
                     TNHASVAENLEAWKVLERFDKPFLTAFSDGDAVTRGGEAAFQARVPGAKGQPHVILSG
                     GHFLQEDSPAEIAAILDAMIARSVKGFH"
     gene            2843..3865
                     /locus_tag="VHN39_01575"
     CDS             2843..3865
                     /locus_tag="VHN39_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HEX2815054.1"
                     /translation="MTDPIALSGAPGSPYTRKMLAVLRYRRIPYRFMLPSNPLLRDLP
                     RPKVQLLPTFYLPDEAGELQAVTDSTPLIRRFEREYEGRSLIPTDPALAFLNELIEDY
                     ADEWLTKAMFHYRWAYEADIAKAAAILPCWRGFSVPDADLAKAGAMFSERQIGRLRYV
                     GSNAVTGTVIEASYRRFITAFEDHLRLYPYLMGERPGSCDFAVFGQLTQLAEFDPTPM
                     ALTLKLAPRVTAWVGMMEDQSGLEPIAGDWLSIAVLPATLAAILAEIGRVYPPVMLAN
                     AKAVATGASEVTALVDGEVWTQQPFPYQAKCLGWLRQARADLPEAARTQVDAILKPAR
                     LAGLFA"
     gene            3862..4464
                     /locus_tag="VHN39_01580"
     CDS             3862..4464
                     /locus_tag="VHN39_01580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEX2815055.1"
                     /translation="MKSSLAVTPAAASPQVDGRRRRGEDNRAKIVAAMLEIIHAGDLA
                     PSAEQVAQRADVGLRTVFRHFQDMESLFREMSVVIMGELHAAAETPFRSADWRERVVE
                     LVERRGWAFEKVGPFLRATSLLQRRSKYMDVDHARLVKALRDILKQQLPPAVARDQLK
                     VEALDLLLSFEAWSRLRREQGLTPKRARETLEAAVRRLLD"
     gene            4636..5058
                     /locus_tag="VHN39_01585"
     CDS             4636..5058
                     /locus_tag="VHN39_01585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815056.1"
                     /translation="MSVSSISGATPPNPPSAQDSSFRTAMQQLTSAISSGDMKGAQTA
                     YATLTNLQQNSGQSNSTGPLAQFLSTIGADLSKGDLTTAQSDLTSFQAAHGKHHHHAP
                     PAANGASSDNAPSSSTATASSSGGTPTTSSSNVVDISA"
     gene            complement(5114..5392)
                     /locus_tag="VHN39_01590"
     CDS             complement(5114..5392)
                     /locus_tag="VHN39_01590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815057.1"
                     /translation="MTTVNYPNPVTVNGYQCKNCTDVDYAKKNIDPAHPADGPFGVDA
                     KSAPKGSTGKTTDIPAVTLGGVFSGISPPANSNAPLTATQGQRLDVSV"
     gene            complement(5456..>6079)
                     /locus_tag="VHN39_01595"
     CDS             complement(5456..>6079)
                     /locus_tag="VHN39_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016702 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of two atoms of oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carotenoid oxygenase family protein"
                     /protein_id="HEX2815058.1"
                     /translation="KPCYVLHWMNAYEEGDEVVLDGYFQEDPQPPPLEGFGPKIGQMM
                     AYLDEHSMKPRLYRWRFNLKTGAVKEGLLDDRILEFGSFNQQTAGRKGRYLYSTTSKP
                     GWFLFTGVVKHDLVTGQSWTAGFGENRYGSEAPFAPRVGAVDEDDGYLVSFITDMAEN
                     LSECVLIDAKDIEAGPVCRIRLPHRISSGTHATWASGESLRQDQAAL"
BASE COUNT         1015 a         2089 c         1958 g         1017 t
ORIGIN      
        1 cgccatgcgg ccggaggaag ggccggagcg cagcacccgc gtgggctcgt tctggatcga
       61 ccggaccgag gtcaccaacg ccgacttcgc gcgcttcgtg aaggccacag gctatgtgac
      121 gctcgccgag cggccgctgg atcccaaggc ctatccgcag ctctccggcg accagctcaa
      181 gccgtccggc atcgtcttcg cgggctccga ccacgccgcg ggcgacgacc ccggccagtg
      241 gtggcgggtg gttcaaggcg cggactggcg ccaccccgaa gggcccggca gttcgatcgc
      301 cggcaaggcg aagctccccg tggtgcaggt gggctgggac gacgccatgg cctacgcccg
      361 ctggctcggc cgcgacctgc ccaccgaggc ggagtgggag tacgccgcgc aaggcggccg
      421 gggcgccacc cgcttcgtct ggggcgacga ggcgctggac gacgcccacc cgcaggccaa
      481 tgtctggcag ggtatcttcc cggtgatgga ttccggcgcc gatggctaca aggccagggc
      541 cgcgcccgtc ggatgcttcc cgcccaacgg ctacggcctc tacgacatgg ccggcaatgt
      601 ctgggagtgg gcgaaggact ggtaccgccc caacctcgac ggcgcggcgg cggacaatcc
      661 ggcgggcccg cgcgagaccg tcgcctttga ccccggcgat cctggcgcgc gcaagcatgt
      721 gatcaagggc ggctcgttcc tctgctcgcc caactactgc taccgctacc gccccgccgc
      781 ccgcgagccc gggcccaccg acaccggcga gaaccacatc ggcttccgga cggtgctgag
      841 ggtcagcggc gcaggcgccg cttcggcaga gggtcgatct ggggctcctg atcctcgatg
      901 aagtaggacc cgtcgcgggt acacccaagc gagatatcct cgatcttata ggagccgtcc
      961 gctccgacat cgaacctttg gcccgtgata atgccgaggc aatacagccc gatatccatt
     1021 tcatcgatgg tgaggcttac ggtgtaggga ccgtgcgagc atgacccttc ttggccacag
     1081 acgcctgccc acatctgtcg gacaagtcta atgccatgat cggccacgtc gggatgaacg
     1141 ccggtgcggt cagcgtagtc taccctcgca atgatcccag gatgcacctc aacgctcaga
     1201 gttccactcg tcttgagttg cgcaagcagc aacgccgtca gtgcaaacga ccataccatt
     1261 gcgaccccgt ccgatccgcc gcgcgcctac cagggtcata gatagccgtg gcgccccgag
     1321 gtcatcacct atccattgcc gaggtttgga atgtcagttc gcatgcgccg cgggaagcca
     1381 gcgtcctaga acccggcgcc cggcttggtg cggatgttga gctggccggc caggcccgcc
     1441 ttcctgtggt gctcgatggc gtgcatggcc ggcgacatgg ccatctcgcg gaacgccgcc
     1501 aacgacgggt attcggccag cgccaccatg tcccagagct cctccacctc gccgatcatc
     1561 aggccggtga cctcgccgga atagcgcacc ttgccgccca gcccctccac cagcttgcgc
     1621 acttcttcgc catagcgggc gtaggcctgg gcgccggtca gatgactgtc cgtcccgtcc
     1681 gcatactcgg cgcgtggctt gaacttcagc aggttgacca tcacgaacgg tccgtcctcg
     1741 gcggcgccga agaaggccat ggcgcgggcc atgtccggca tgacctcgtt gatgacttgc
     1801 atcagtggaa gcccttcacg ctccgggcga tcatggcgtc gaggatcgcg gcgatctcgg
     1861 cgggactgtc ctcctgcagg aagtggccgc cggaaaggat cacgtgcggc tggcccttgg
     1921 cgccgggcac gcgggcctgg aacgccgcct cgccaccgcg ggtcaccgcg tcgccatcgc
     1981 tgaaggcggt cagaaacggc ttgtcgaagc gctccagcac cttccaggct tccaggttct
     2041 ccgccaccga ggcgtgattg gtgctgaccg gcaccagcat cggaaactgc cgcgcgccct
     2101 ccttgtagct ctcgtccgga aacggagcgt cgtaggccgc gatctcggca tcggagaggt
     2161 tgcgcccggt cccaccgttg acgatcaccc cgatcggcat ctgtgggacg gcctggctga
     2221 aatcgagcca ggccttgaag ccctccgaca tccccgtgcc cgccggcagg cccgtgttgc
     2281 cgatcaccac gccggcgaag atctccggga aggccgcgac gagcctgagc ccgatcagtc
     2341 cgccccagtc ctggcagaag agggtgatgt cggtgagctc ggtctgcagc agccactggc
     2401 tcatccacgc gacgtgccgc tcataggtat agtctccgcg ctcggccggc ttgtcggagc
     2461 ggccaaagcc gatcaggtcc ggcgcgatga cccggtgacc cttggccagc aggtcagcga
     2521 tgatcttgcg gtagaggtag gaccaggacg gctcgccgtg cagcagcagc accggagcgg
     2581 cattggccgg cccctcgtcg acatagtgca gccgaagcgc cgtaccgtcg gcgtcgacca
     2641 cggtggcgta gtgtggcgcg aagggccagt cggcgagacc ggcgaaacgc tcgtctggag
     2701 tgcggaggac cttcatcgcc atgccccttg attgacttgt cggtctgcgg cttcgaatat
     2761 agtgacaatg tgcgtgccac tatatgacgc cgtcgtcaag ttgacggcgc ccgcgagaat
     2821 ctgcctgatg gagaacccgc gcatgaccga ccccatcgcc ctctccggcg cccccggatc
     2881 gccctacacc cgcaagatgc tggccgtgct gcgctatcgg cggatcccct accgcttcat
     2941 gctgcccagc aatccgctgc tgcgcgacct gccgagaccg aaggtgcagc tcctgcccac
     3001 cttctacctg cccgacgagg cgggagagct gcaggcggtc accgactcga ccccgttgat
     3061 tcgccgcttc gagcgcgaat acgagggccg cagcctgatc cccaccgatc cggcgctggc
     3121 cttcctcaat gagctgatcg aggactacgc cgacgagtgg ctgaccaagg ccatgttcca
     3181 ctaccgctgg gcctatgagg ccgacatcgc caaggccgcg gcgatcctgc cctgctggcg
     3241 tgggttcagc gtgccggacg ccgacctcgc caaggccggc gccatgttct ccgagcgcca
     3301 gatcggccgg ctgcgctacg tgggctccaa cgctgtgacc ggcacggtga tcgaggccag
     3361 ctaccggcgc ttcattacgg ccttcgagga ccacctgcgg ctctatccct atctgatggg
     3421 cgagcgcccg ggctcctgcg acttcgcggt gttcggccag ctgacccagc tcgccgagtt
     3481 cgacccgacg cccatggcgc tcaccctgaa gcttgccccg cgcgtcaccg cctgggtggg
     3541 catgatggag gatcagtccg gccttgagcc catcgccggc gactggctct ccatcgccgt
     3601 cctgcccgcc accctcgccg ccatcctggc cgagatcggc cgggtctatc cgccggtgat
     3661 gctggccaat gccaaggcgg tggcgaccgg cgcctcggag gtgaccgcgc tggtggacgg
     3721 cgaggtctgg acccagcagc ccttccccta tcaggccaaa tgcctgggtt ggctccgcca
     3781 ggcccgcgcc gatctgcccg aggccgcccg gacccaggtg gacgccatcc tcaagcccgc
     3841 ccgccttgcc ggattgttcg catgaaatcg tcgctcgccg tgacaccggc cgccgcctcg
     3901 ccccaggtag acgggcgccg ccgacgcggc gaggacaacc gcgccaagat cgtcgccgcc
     3961 atgctggaga tcatccacgc gggcgacctc gctcccagcg ccgagcaggt ggcgcagcgc
     4021 gccgatgtgg gcctgcgcac cgtcttccgc cacttccagg acatggaaag cctgttccgc
     4081 gagatgtccg tggtgatcat gggcgagttg cacgcggcgg ccgaaacgcc cttccgctcc
     4141 gccgactggc gcgagcgggt ggtcgagctg gtggagcgcc gcggctgggc cttcgagaag
     4201 gtcggtccct tcctgcgcgc aacgagcctg ctgcagcgcc gctcgaagta catggacgtc
     4261 gatcacgcgc gcctggtgaa ggcgctgcgg gatatcctca agcagcagct cccgccggcc
     4321 gtggcgcgcg accagctgaa ggtcgaggcg ttggacctgc tgctcagctt cgaagcctgg
     4381 tcccgcctgc gccgcgagca gggcctcacg cccaagcggg cgcgcgagac cctcgaggcg
     4441 gcggtgcgaa ggttgctgga ctgaacgcga agctatagat ttatgacagc aacaactgga
     4501 tctgttgcgg atgtgtccgt atgataactg agtgacatct cgtcataact taattcagac
     4561 catcgaatac atatgtcctt aatatttgta ttccattcct tgtgtgggga tcaggggcaa
     4621 tgaatggaga cttcgatgtc tgtatccagc atttcgggcg ccacgccgcc caatccaccc
     4681 tcggcgcagg actcgagctt tcggaccgcc atgcagcagc tgacgagcgc gatcagctcg
     4741 ggcgacatga agggggccca gacggcctac gccacgctca ccaatcttca gcagaattcc
     4801 ggccagtcca attccaccgg acctctcgcc cagttcctgt ccaccatcgg cgcggacctg
     4861 agcaagggcg acctcacgac cgcgcaaagc gatctgacgt ccttccaggc cgcacatgga
     4921 aaacaccatc accacgcgcc gccggcggcg aatggcgcga gcagcgacaa cgctccgtcg
     4981 agttcgacgg ccacggcgtc cagctccggc gggacgccga ccacgagctc gtccaacgtc
     5041 gtggacatat cggcttgatc ggccggggtt cggacagcgc tcgcgccagc cggaccccac
     5101 cgcaacccgt ccgctagacg gagacgtcca ggcgctgtcc ctgcgtcgcc gtgagcgggg
     5161 cattggaatt ggccggcgga gagatgccag agaagacgcc accgagcgtg acggccggga
     5221 tatcagtcgt cttgccggtc gaacccttgg gggcggactt agcgtcgacg ccgaacgggc
     5281 cgtcggcggg atgggccggg tcgatattct tcttggcgta gtcgacgtcc gtgcagttct
     5341 tgcactggta gccgttgacg gtcaccgggt tcggatagtt gacggtggtc atcggacgcc
     5401 cttctggcag acccttcgcg gcctgacagt ctatccggca ggatgaacca attggttaca
     5461 gcgccgcttg atcttgccga aggctctcac ccgaggccca ggtggcgtgg gtgccggacg
     5521 aaatgcggtg cggcagccgg atgcggcaga cggggccggc ctcgatgtcc ttcgcgtcga
     5581 tcagcacgca ttccgagagg ttctcggcca tgtcggtgat gaagctgacg aggtagccgt
     5641 cgtcctcgtc caccgcgccc acccgcggcg caaacggcgc ctcggagcca taacggttct
     5701 cgccgaagcc ggcggtccag gactgtccgg tcaccaggtc atgcttgacg acgccggtga
     5761 acaggaacca gccgggcttc gacgtcgtgg aatagagata gcggcccttc ctgccagcgg
     5821 tctgctggtt gaacgacccg aactccagga tgcggtcgtc gagcaggcct tccttgaccg
     5881 ccccggtctt taggttgaag cgccaccggt agagtctggg cttcatggag tgctcgtcga
     5941 gataggccat catctggccg atcttgggcc cgaacccttc gagcggcggc ggctgtgggt
     6001 cctcctggaa atagccgtcg agcactacct cgtcgccctc ctcgtaggcg ttcatccagt
     6061 gaaggacgta acagggctt
//
LOCUS       DATAJL010000085         1570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52758,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000085 DATAJL010000000
VERSION     DATAJL010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52758"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..413)
                     /locus_tag="VHN39_01600"
     CDS             complement(<1..413)
                     /locus_tag="VHN39_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815059.1"
                     /translation="MSRAPQSIFREAAIDRLSSPDQLDQIVGVTRPVDWMAAAVVALA
                     ILMLLVWSVVGAIPTRVAGDGIVLGSGGKVADAAASAGGRLRTVFVTVGDRLAQLHPI
                     ADRHEDRAKPAAGRGRRVGDLAARAQHNAVAGDARR"
     gene            1053..>1570
                     /locus_tag="VHN39_01605"
     CDS             1053..>1570
                     /locus_tag="VHN39_01605"
                     /inference="COORDINATES: protein motif:HMM:NF017959.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEX2815060.1"
                     /translation="MLLACGVAAPILALASTLLAMAVYPHFNQARQYLSELGGASAGR
                     PAIFNAGVFAAGFLTALAGVGFGLAIATLTKARVIGGLTASVFLLAGYGLAQAAIYPW
                     PDPRHLAINLGLGIQIAPLLLLWGLWPLRDLRGLKLFLALVFVAMAVLTLLTKHLVLP
                     ALVNDFNVGWWER"
BASE COUNT          217 a          553 c          534 g          266 t
ORIGIN      
        1 cgacgcgcgt cgccggcgac ggcattgtgc tgggctcggg cggcaaggtc gccgacgcgg
       61 cggcctcggc cggcggccgg cttcgcacgg tcttcgtgac ggtcggcgat cgggtgaagc
      121 tgggccagcc gatcgccgac cgtcacgaag accgtgcgaa gccggccgcc ggccgatgcc
      181 gccgcgtcgg cgaccttgcc gcccgagccc agcacaatgc cgtcgccggc gacgcgcgtc
      241 gggatcgcgc cgaccacgga ccagaccagc agcattaaga tggcgagcgc cacgaccgcc
      301 gccgccatcc agtccaccgg tcgggtgacg ccgacgatct ggtcaagttg atcaggcgag
      361 gacagccgat cgatcgcggc ttcgcggaaa atgctctgcg gcgccctgct catggcgaac
      421 gccgccatcc gccttcaaat cccgcgacca ccagcacgcc cccgattgtg cgaaaaggtc
      481 agtacaggca cgcctttccg agaacgacag tctgtcagac taaagtcttc tgtcgcgcgt
      541 tcaatcggcg gcgcgggggc gtgagccgtt ccgcgctgaa ttgcgttttg gccttcgaat
      601 gcgaagtcgc ccgcagcccg tcaggccctt gcggtcattt ccagtgcgga gacacggcgg
      661 ctggcgcggg ttgggtgggg gacgtcggcg gcggtcccgg cgaagacgga ccgcctagcg
      721 ctctgacgct gtctgaggcc gccgccccag gggagctgtg acggcggccc cttacggtga
      781 cgctacgcgg cggtcggggt gtcgaggccc ggtcgccgag taagatcatt gacggtgtgt
      841 cgggcgcctg gcgccaggac tacggcagag gttgaagctt tggcccagca catgcccgcg
      901 gcctgggcgt cacgcctgac ttatgggcat ttccgcccgc ccggcgcgtg acttgcggcc
      961 gaaatctgcc gatcaatggc cttgtgcgtc gcctccccgt catagatccc cttaccgacc
     1021 cgacacggcc gctcccgttc gcgggtcggc gtgtgctgct cgcctgcggc gtggccgccc
     1081 cgattctggc gctcgcttcg acgcttctgg cgatggccgt ctatccccac ttcaaccagg
     1141 cccggcaata tctgagcgaa ctcggcggcg cgtcggcggg caggcccgcc atcttcaacg
     1201 ccggggtctt cgccgccggc ttcctgacgg cgctggccgg cgtggggttc gggctggcga
     1261 tcgccacctt gaccaaggcc cgcgtcatcg gcggcctcac ggcgagcgtg ttcctcctgg
     1321 ccggctacgg cctggcacag gcggcgatct atccctggcc cgacccgagg cacctggcga
     1381 tcaatctggg cctcggcatc cagatcgcgc ccctgctatt gctctgggga ctctggccgc
     1441 tgcgcgacct gcgtgggctg aagctcttcc tggccctagt cttcgtggcg atggcggtcc
     1501 tgaccctgct gaccaagcat ctggtcctcc ccgccctggt caacgacttc aacgtcggat
     1561 ggtgggagcg
//
LOCUS       DATAJL010000086         3679 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40108,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000086 DATAJL010000000
VERSION     DATAJL010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3679
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40108"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VHN39_01610"
     CDS             <1..395
                     /locus_tag="VHN39_01610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX2815061.1"
                     /translation="LAQETFLAAWSRIGRLQAGASVRAWLCGIGYNKHLTAVRSAGRE
                     RARGAAYEADRDETVDAAPEDKLALERAMAELPADQRACVALCLAADFSHAEAADALD
                     MPLGTVKSHVSRGRARLCQALGVCDDAS"
     gene            382..690
                     /locus_tag="VHN39_01615"
     CDS             382..690
                     /locus_tag="VHN39_01615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815062.1"
                     /translation="MTQADDRLKALFALDEPAARDPVFSTTVMEKIMRRRFQEDVALL
                     SGLSVVGGGAFWLLWPTLQPVVVSLSQGLAPALGAIGLAAGALVILHGRPSTALGLGS
                     "
     gene            796..1185
                     /locus_tag="VHN39_01620"
     CDS             796..1185
                     /locus_tag="VHN39_01620"
                     /inference="COORDINATES: protein motif:HMM:NF039701.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6249 domain-containing protein"
                     /protein_id="HEX2815063.1"
                     /translation="MEAVFIIAIIFGSIAAVCIVPFYIRSQERIRIQETLRAAIEKGQ
                     PLPTEMMATMETAARNVNLRAVPSPSRDLRTGIIWLGVGLGFAAMGIALGYEEPESTI
                     PMIAMAAFPVFIGLAFIALSLINRTKS"
     gene            1213..1797
                     /locus_tag="VHN39_01625"
     CDS             1213..1797
                     /locus_tag="VHN39_01625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2815064.1"
                     /translation="MPGSRHSRFASLHDVELCSHAATGERRAFGELVRRHGSAVRGVL
                     RRMGAQSAEADDVAQDAFLTAFERVAEFRGEGTFAGWVKKIAARLYLRRLQRDRKLGL
                     MTAEPVEDEAEAPRGDADATIDLEEALKVLGPVERLCVTMCFGAGLSHTEAAEALNLP
                     LGTVKSHVKRGLEKLRTRLAPENGVVLEGRRGNG"
     gene            1790..2167
                     /locus_tag="VHN39_01630"
     CDS             1790..2167
                     /locus_tag="VHN39_01630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815065.1"
                     /translation="MVELDFERRLERLFADCPELADAGTFAERVERRLDAGWTARRWL
                     IGAAGVVGGVIGASQLMLSNVFQRVETAGDSARLLTSSLNHISTGTDWVAALSNGGTA
                     VWVAAGLAVIMMGFVLTRVIGEI"
     gene            2290..3096
                     /locus_tag="VHN39_01635"
     CDS             2290..3096
                     /locus_tag="VHN39_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2815066.1"
                     /translation="MSDLFEEVEEQLRSDRYRALARKSAPWVLAAAAAALVVALGIWG
                     WQQYQQQTTDKASEQYAAALTAFAQGDSGKAVQLWGEVAKSPAKAFSSLALMQLGAAK
                     MASGKPEDVKAAVALFDQAAAAAPDDILGDAARLKSAFAILDTAPFSEVEGRLAPLMK
                     DGHPYRVQAREALAFAKLMKGDTAGARSDFVVITGTLDAPEGARQRAQAAMGLIDTGS
                     AKAVPAAVKAALALPPPMLVGPGGVPMGLAPQAQEGAQDQAPQDQAPGPQ"
     gene            3093..>3679
                     /locus_tag="VHN39_01640"
     CDS             3093..>3679
                     /locus_tag="VHN39_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2815067.1"
                     /translation="MTPRAKSLLAVLMIAALAASGCSTISRINPFKDKTAKEVATEGD
                     RISIIAADQKLEPAEALKNVDFALPPPETMADWPLPGGTPEQLVGNVTAAPGLTIAWR
                     KNIGMGSKNGELVTAPPIVAGGRVFTIDAQAEVSAHDAQTGAGIWRVNMRPNDNKRDR
                     EGFGGGLAYAGGKLYMTSGFRLVAQIDAATGRVGWR"
BASE COUNT          590 a         1208 c         1288 g          593 t
ORIGIN      
        1 acctggcgca ggagaccttc ctggcggcct ggtcacggat cgggcggctg caggccgggg
       61 ccagcgtcag ggcctggctg tgcggcatcg gctacaacaa gcacctgacg gcggtgcggt
      121 ccgccgggcg cgagcgggcg cggggcgcgg cctacgaggc cgatcgcgac gagacagtgg
      181 acgccgcgcc cgaggacaag ctggccctgg agcgggccat ggccgagctg ccggcggacc
      241 agagggcctg tgtggcgctt tgcctggcgg cggatttcag tcatgccgaa gcggcggacg
      301 cgctagatat gccgctgggg accgtgaaga gccatgtatc gcggggccgc gcgcggctct
      361 gccaagcgtt gggagtgtgc gatgacgcaa gctgacgatc ggctgaaggc cctgttcgcg
      421 ctcgacgagc cggcggcccg ggacccggtg ttctccacca cggtgatgga aaagatcatg
      481 cgccggcgct tccaggagga cgtggcgctg ctctcgggcc tcagcgtggt gggcggcggc
      541 gcgttctggc tgctctggcc gaccctgcag ccggtcgtgg tgtcgctttc gcaggggctg
      601 gccccggctc tgggcgcgat cggattggcg gccggcgccc tggtgatcct ccatggacgc
      661 ccctcgacag cgctaggcct tggatcatga ccaagatttc acgctacaat ctgcatctga
      721 cggtcgccgc ctaagcctct tcctcatcag agacggggct tgttcggtcc cggtcgagaa
      781 gagggagaga ctaagatgga agctgtattc atcattgcga tcatattcgg atcgatcgcc
      841 gccgtttgta tcgtgccgtt ctacatccgc tctcaggaac ggattcgcat ccaggaaacc
      901 ctgcgcgccg ccatcgagaa gggccaaccg ctgcccaccg agatgatggc gaccatggaa
      961 accgccgccc gcaacgtgaa cctccgcgcc gtgccgtcgc ccagccgcga tctgcggacc
     1021 ggcatcatct ggctgggtgt gggcctgggc ttcgccgcca tgggcatcgc gctgggctac
     1081 gaggagccgg aatcgacgat cccgatgatc gccatggcgg cctttcccgt gttcatcggc
     1141 ctggcgttca tcgcgctgag cctcatcaac cggaccaaga gctagttatt ggcttagccg
     1201 ggggaacagc ccatgccggg ctcaagacat tcacggttcg ccagcctgca cgacgtggag
     1261 ctttgctccc acgccgcgac aggagagcgg cgggccttcg gggagctggt gcgtcgccac
     1321 ggttcggcgg tgcgcggtgt gctgcgccgg atgggggcgc agtccgcgga agccgatgac
     1381 gtggctcagg acgccttcct caccgccttc gagcgggtcg ccgaatttcg cggcgagggg
     1441 accttcgcgg gctgggtgaa gaagatcgct gcacggctct atctgcgccg tctgcagcgc
     1501 gaccggaaac tgggcctgat gacggccgag ccggtcgaag acgaggccga agcgccgcgc
     1561 ggcgacgccg atgcgacgat cgacctcgaa gaagcgttga aggtgctcgg tcccgtggaa
     1621 aggctctgcg tcaccatgtg ctttggagca ggactttctc acacggaagc ggctgaggcc
     1681 ttgaacctgc cacttggaac ggtcaaatcc catgtcaaac gtggtctgga aaaactcaga
     1741 acgcgactgg cgccggagaa cggcgtcgtt ttggaaggga ggcgtggcaa tggttgagct
     1801 cgatttcgag cgccggctcg agcgcctctt cgccgattgc cccgaactgg cggacgccgg
     1861 aaccttcgcc gagcgcgtgg aacgccggct cgacgccggt tggactgcca ggcgctggct
     1921 gatcggcgcg gccggtgtgg tcggcggcgt gatcggcgcc agccagttga tgctgtccaa
     1981 tgtcttccaa cgggtggaga cggctggtga ttccgcgcgt ctgctcacct ccagcctcaa
     2041 tcatatctcc accggcacag actgggtcgc ggccctgtcg aacggcggga cggcggtctg
     2101 ggtcgcggcg gggctggctg tcattatgat gggcttcgtg ctgacccggg tgatcggcga
     2161 gatctgaagc agatccccgc cgttgcagcc ctatttcacg tcgcctgagg atcggttgcg
     2221 gcgcgcggcg gcgcgctata ggttcccggc ctctgaaatg ccgcgccaat ttctgtccgg
     2281 agtccccgat tgagcgatct gtttgaagag gtcgaggagc agcttcgctc cgaccgctac
     2341 cgggcgcttg cgcgcaagag cgcgccgtgg gtgctcgccg ccgccgcggc cgcgctcgtc
     2401 gtcgccctgg ggatctgggg ctggcagcag taccagcagc aaaccaccga caaggcctcc
     2461 gagcagtatg ccgccgccct gaccgccttt gcgcagggcg acagtggcaa ggccgtgcag
     2521 ctgtggggcg aggtcgccaa gtcgccggcc aaggccttca gctcgttggc cttgatgcaa
     2581 ctcggcgccg cgaagatggc gtcgggcaag cctgaagacg tcaaggccgc ggtcgcgctg
     2641 ttcgaccagg ccgccgccgc ggcgcccgac gatattctgg gcgacgccgc gcgcctcaaa
     2701 tccgccttcg cgatcctcga caccgctcct ttctcggaag tggaggggcg attggcgccg
     2761 ctgatgaaag acggtcaccc ctatcgggtg caggcgcgtg aggcgttggc cttcgccaag
     2821 ctgatgaagg gcgacaccgc cggcgcacga tcggacttcg tggtgatcac cgggaccctg
     2881 gatgcgcccg agggcgcgcg ccagcgggcc caggccgcca tgggcttgat cgacaccggc
     2941 tcggccaagg ccgtgccggc cgcggtgaag gccgcgctcg ccttgccgcc gccgatgctg
     3001 gtcggccccg gcggcgtgcc gatgggcctg gctccccaag ctcaagaagg ggcacaagac
     3061 caggcgccgc aagaccaagc gccgggcccg caatgacgcc tcgcgccaag tctctcctcg
     3121 ccgtcctgat gatcgccgcg ctggccgcca gcggctgctc gacgatcagc aggatcaatc
     3181 cgttcaagga caagaccgcc aaagaggtcg cgaccgaagg cgatcgcatc tcgattatcg
     3241 cggccgacca gaagctggag ccggccgagg cgctgaagaa cgtcgacttc gccttgccgc
     3301 cgcccgagac catggccgac tggccgttac ccggcggcac gccagaacaa cttgtgggca
     3361 acgttaccgc cgcgcccggc ctgacgatcg cctggcgcaa gaacatcggc atgggttcga
     3421 agaacggcga gctggtcacc gcgccgccca tcgtggccgg cgggcgggtg ttcacgatcg
     3481 acgcccaggc cgaggtcagc gcccacgacg cccagacggg cgccggcatc tggcgcgtga
     3541 acatgcggcc caacgacaac aagcgcgacc gcgagggctt tggcggcggc ctcgcctatg
     3601 cgggcggcaa gctctacatg acctccggct tccgtctggt cgcccagatc gacgccgcca
     3661 ccggccgcgt cggctggcg
//
LOCUS       DATAJL010000087         1810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40123,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000087 DATAJL010000000
VERSION     DATAJL010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40123"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..1173
                     /locus_tag="VHN39_01645"
     CDS             166..1173
                     /locus_tag="VHN39_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-eliminating lyase-related protein"
                     /protein_id="HEX2815068.1"
                     /translation="MARYDFVSDNTAPAAPEAMAALLAANTGYVASYGADPFTAQAAD
                     LIRQMLDADAEVRFVASGTAANAIALAALCLPFESVVAHEHAHAATDETGAPGFFGHG
                     LGMIPLPGAHGRIDGAALEAALAQPENGHVQSPGALSLTNATEYGAVYSGAAMSALIA
                     PAKAKGLGVHLDGARIFNAAAAGFDPVAIRPLGVDILAIGGTKAGMPPTEALVIFDRK
                     LAQRFDARLKQSGQLPSKGRFYAAPFIGMLQDGAVLRHAAHANAMATRLAAVMPFKLN
                     HPVESSGVFVEMDEATRLRLDAAGWVSSRFLDGSVRFMCSWATTPEAVDELAEALKAV
                     A"
     gene            complement(1170..>1810)
                     /locus_tag="VHN39_01650"
     CDS             complement(1170..>1810)
                     /locus_tag="VHN39_01650"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HEX2815069.1"
                     /translation="VIHKATSVRHALSAQAAGVDVISIDGFECAGHPGEDDVPGLILI
                     PAAADKIKIPMIASGGFGDARGLVAALALGAEGINMGTRFMATVESPIHENIKQQIVD
                     NDERATDLIFRTMHNTSRVAKNAISQQVVALEREGAKFEDVRELVAGTRGRSVYEVGD
                     NDAGIWSAGQIQGLIHDVPTCAELIHRIVREAEEIIHTRLDRMAGARRMADA"
BASE COUNT          244 a          669 c          609 g          288 t
ORIGIN      
        1 tcgccgaggg ctccggctgt ctgccgctcg ccgccgcgct caccggcgag gcgggtccca
       61 tagccctgaa cgggggtccc atcgtctgtg tggtctccgg cggcaacgtc gacatgacca
      121 ccttctgcga aatcatggcc gcgacggcga gctgaccttt cgcccatggc tcgctacgac
      181 ttcgtctccg acaacaccgc cccggccgcg ccggaggcca tggccgcgct gctggccgcc
      241 aataccggct atgtcgcgag ctatggcgcc gacccgttca cggcccaggc cgccgacctg
      301 atccgccaga tgctcgacgc cgacgccgag gtgcggttcg tggcctccgg caccgccgcc
      361 aacgccatcg ctctcgccgc gctctgcctt cccttcgagt cggtggtcgc ccacgagcac
      421 gcccacgccg ccaccgacga gaccggcgcc ccggggttct tcggtcacgg cctggggatg
      481 atcccgctgc cgggcgcaca cggccggatc gacggcgcgg cgctggaagc ggccctcgcg
      541 caacccgaga acggccacgt ccagtcgccg ggcgcgctct cgcttaccaa cgccaccgaa
      601 tatggcgcgg tctattcagg cgcggcgatg agcgccctga tcgcccccgc caaagccaag
      661 ggactgggcg tccatctgga cggggcgcgg atcttcaacg ccgcggccgc cggtttcgac
      721 cccgtcgcga tccgtccgct gggcgtcgac atcctggcga tcggcgggac caaggccggc
      781 atgccgccca ccgaggccct cgtgatcttc gaccgcaagc tcgcccagcg tttcgacgcg
      841 cgcctgaagc aatcgggcca gctgccgtcc aagggccggt tctacgccgc gccgttcatc
      901 ggcatgctgc aggacggcgc ggtgctgcgc cacgccgccc acgccaacgc catggccacg
      961 cgcctggcgg ccgttatgcc gttcaagctc aaccacccgg tggaatccag cggcgtcttc
     1021 gtggagatgg acgaggccac gcggctgcgc ctggacgccg cgggctgggt gagctcgcgg
     1081 ttcctcgacg gctcggtgcg cttcatgtgc tcctgggcga ccacccccga ggcggtggac
     1141 gaactcgccg aggcgctgaa ggccgtcgcc taggcgtccg ccattcgccg cgcgccggcc
     1201 atgcgatcca gacgcgtgtg gatgatctcc tcggcctcgc ggacgatgcg gtggatcagt
     1261 tcggcgcagg tcgggacgtc gtggatcagg ccctggatct ggcccgccga ccagatgccg
     1321 gcgtcgttgt cgccgacctc gtagacgctg cggccccgcg tgccggccac cagctcgcgg
     1381 acgtcctcga acttggcgcc ctcgcgctcc agggccacga cctgctggct gatggcgttc
     1441 ttcgccaccc ggctggtgtt gtgcatggtg cggaagatca ggtccgtggc gcgctcgtcg
     1501 ttgtcgacga tctgctgctt gatattctcg tggatcgggc tttccacggt cgccatgaag
     1561 cgggtgccca tgttgatgcc ctcagcgccc agggcgagcg cggcgaccag accccgcgcg
     1621 tcaccgaaac cgccggaggc gatcatcggg atcttgatct tgtcggccgc cgccgggatc
     1681 aggatcaggc cggggacgtc gtcctcgccc gggtggccgg cgcattcgaa gccgtcgatg
     1741 ctgatcacat cgaccccggc ggcctgagcg gacagcgcgt gccggacgga cgtggccttg
     1801 tggatgaccc
//
LOCUS       DATAJL010000088         2437 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64989,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000088 DATAJL010000000
VERSION     DATAJL010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2437)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2437)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2437
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64989"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2194
                     /locus_tag="VHN39_01655"
     CDS             <1..2194
                     /locus_tag="VHN39_01655"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815070.1"
                     /translation="MVPTKRRPAARALLLACGSALTLLAATAAPRCANAAVDDADAAA
                     PGQVSEVVVTASRVDLLGTAATASQGSVTQTELSLRPVYRVGQLLESTPGLVVTAHSG
                     EGKANQYLVRGFNLDHGTDIANFVDDMPINRPTNTHGQGYSDVNFEIPELAQGLDYTK
                     GPYYAAVGDFGAVVSTHLKLADDVPGQVSVAAGSFGIYNVFAGGTRHFGDDDRVVGGI
                     YLGHLDGPFDHPDNFRKLAGELRYSHGDTADGYSATAMYYKGDGNFTTDQPLRAIQEG
                     LIDRFGTLDPTDGSSSERASLSAHFGATGKTWKFSSSAYYIHSRMTLWNDFTHVLDDP
                     INGDQEEQNETRDTFGGQAALVLYQTFGMVENDLTFGLQARSDTAFVDRRHTLARRTL
                     ATCSEEQADGPTLQVAAPSGACTADNVRLLDVGAYVEDTTRWTPWLRTIVGLREEYYQ
                     ASDHSLISGFSGSGHQSLVQPKGSIVLGPFFQTELYVSAGRGFHSDDVRGVFGTVPLE
                     GVPGLAGKTPLLAPATGEEVGLRTNIIPKLSIQVAVFQEDFQSELTYNADAGQDEASA
                     PSRRQGIEISGEYKPFPWMELNADLAFSKARYHAGAATLANFGLNGPFIADAPSFIGS
                     FGVLVDNLGPWFGGLQWRDLGKYPISDGDQFPQDKGYSEFNLDVGYKFSAHLKAQLTV
                     FNLTNTKANAAAYFYAARLPGEPAEGINDFQVHPLEPLSAVAKVTYVF"
     gene            2249..>2437
                     /locus_tag="VHN39_01660"
     CDS             2249..>2437
                     /locus_tag="VHN39_01660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815071.1"
                     /translation="MGRFSRATSSGANRPWLLFLLLAALLLRAATPPGWMPNPQGALG
                     APLIICTADGSHLVQLDRQ"
BASE COUNT          411 a          909 c          749 g          368 t
ORIGIN      
        1 gatggtcccg accaaacgcc gccctgcggc gcgagccctg ctgcttgcct gcggctcggc
       61 cttgacgctg ctggcggcga ccgccgctcc ccgctgcgcc aacgccgccg tcgatgacgc
      121 ggacgcggcc gcgccgggcc aggtcagcga ggtcgtggtc accgcctcgc gcgtcgatct
      181 tctgggaacg gcggccaccg ccagccaggg ctcggtgacc cagaccgaac tgtcgcttcg
      241 gccggtctac cgtgtcggcc agctcttgga gagcacgccc ggcctggtgg tcaccgccca
      301 ctccggagag ggcaaggcca accagtacct ggtgcgcggc ttcaacctcg accacggcac
      361 cgacatcgcc aacttcgtcg acgacatgcc gatcaaccgg cccaccaaca cccacggcca
      421 gggctattcc gacgtcaatt tcgagatccc ggaactggcc cagggcctgg actacaccaa
      481 ggggccttac tacgccgcgg tcggcgactt cggcgcggtg gtctcgaccc acctaaagct
      541 cgccgatgac gtgccgggcc aagtctccgt cgcggccgga agcttcggca tctacaacgt
      601 ctttgccggc ggcacgcgcc acttcggcga cgacgatcgc gtggtgggcg ggatctacct
      661 gggccacctg gacggcccct tcgaccatcc ggacaatttc cgaaagctgg ccggcgaact
      721 gcgctacagc cacggcgaca ccgccgacgg ctacagcgcg acggcgatgt actacaaggg
      781 cgacgggaac ttcacgaccg accagccgct cagggccatc caggagggcc tgatcgaccg
      841 cttcggcacg ctggacccca ctgacggatc gagttctgag cgggccagtc tgtcggcgca
      901 ctttggggcg accggcaaga cctggaagtt ctcctccagc gcctactaca tccacagtcg
      961 catgacgctc tggaacgact tcacccacgt cctggatgat ccgatcaacg gcgaccagga
     1021 ggagcagaac gagacccgcg acacctttgg cgggcaagcc gccctggtac tctaccagac
     1081 gttcggcatg gtcgagaacg acctcacctt cggtctccag gcccgcagcg acaccgcctt
     1141 cgtcgaccgc cgccacaccc tggcccgacg gacgctggcg acctgctcag aggaacaggc
     1201 ggacgggcca accctgcagg tcgccgcgcc cagcggcgcc tgcaccgccg acaatgtgcg
     1261 cctgctcgac gtgggcgcct atgtcgagga caccacccgc tggacgccct ggctgcgcac
     1321 catcgtgggg ctgcgcgagg aatactatca ggccagcgac cacagcctga tctccggctt
     1381 ctcaggctcc ggccaccaga gcctggtcca gcccaagggc tcgatcgtgc tgggcccctt
     1441 cttccagacc gagctctacg tctcggccgg ccgcggcttc cactccgacg acgtgcgcgg
     1501 ggtctttggc accgtgccgc tggagggcgt tccgggcctc gccggcaaga ccccgctgct
     1561 ggccccggcc acgggcgagg aagtgggcct tcgcaccaac atcatcccga agctctcgat
     1621 ccaggtcgcg gtcttccagg aggatttcca gtccgagctg acctacaacg ccgacgccgg
     1681 ccaggacgaa gccagcgcgc ccagccgccg ccagggcatc gagatctccg gcgagtacaa
     1741 gccgttcccg tggatggagc tgaacgccga cctggccttc tcaaaagccc gctatcacgc
     1801 cggcgcggcg acgctggcca acttcggcct gaacggaccc ttcatcgccg atgcgccgag
     1861 cttcatcggc tccttcggcg tcctggtgga caacctcggc ccctggttcg gcggcctgca
     1921 gtggcgcgac ctcggcaagt acccgatcag cgacggcgat cagttcccgc aggacaaggg
     1981 ctacagcgag ttcaacctcg acgtgggcta caagttcagc gcccacctga aggcccagct
     2041 caccgtcttc aacctcacca acaccaaggc caacgccgcg gcctatttct acgccgcgcg
     2101 cctgcctggc gagccggcgg agggcatcaa cgacttccag gtccaccccc tggagccgct
     2161 gtcggccgtg gccaaggtca cctacgtttt ctagggcgcg ggctgtctaa aattgacacc
     2221 gccgcggctt cctgcgacgc aaccgatcat gggccggttc agcagagcga cgtcatcggg
     2281 ggcgaaccgc ccctggcttc tgttcctcct gctggcggcg ctgctgctgc gggccgcgac
     2341 tccgccgggc tggatgccaa acccgcaggg cgcgctcggc gcgcctctga tcatctgcac
     2401 ggccgacggc agccatctcg tccagctcga ccgccag
//
LOCUS       DATAJL010000089         1814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14374,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000089 DATAJL010000000
VERSION     DATAJL010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14374"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..842)
                     /locus_tag="VHN39_01665"
     CDS             complement(66..842)
                     /locus_tag="VHN39_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX2815072.1"
                     /translation="MSVSANRRGWLQAGLASATALVLGACDRITANPKGVAFLQSAEG
                     LTRRAQRLFVDRKALAREFGHADISSDFRPNGSIDPTDEDYVALKTKGFADYRLVVDG
                     LVDKPLSLSLTDLRALASRTQITRHDCVEGWSSIAKWTGARLGPLLDQAGLKKTARYI
                     VFHCGDTLEQTLDGSGQYYESIDLIDAYHPQTILAYAMNDRVLPVAHGAPLRLRVERQ
                     LGYKQAKYIMRIEAVDDLKHLGRGNGGFWEDRGYEWYAGI"
     gene            complement(839..1666)
                     /locus_tag="VHN39_01670"
     CDS             complement(839..1666)
                     /locus_tag="VHN39_01670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HEX2815073.1"
                     /translation="MAKPAKVLVYRHAAVTRLTHWINVLALTLLLMSGLNIFGAHPAL
                     YWGQKATFAHPWVSIGAEQRGARMEGVTWIGSAKFRTTGVLGYSGKPGSEEQVAFPAW
                     ATVPSERDLADARHWHFFFAWLFVINGLIYWLVGLIGGHIRKDLLPTRRDVAPKNVWH
                     EIKTHARLKFPKGEEARHYNVLQKGTYLGVVLILLPLMVLTGLCMSPGFNAATPWLVD
                     FFGGRQSARTIHFLAAFTIVGFVLLHLFMVVASGTWNNIRSMITGRYAIVRDAGEKA"
BASE COUNT          295 a          579 c          637 g          303 t
ORIGIN      
        1 ccttggcgca gaacccttac tgagagcccg gccccccgcc ttcgcggggg tgagtcgcaa
       61 cgcgctcaga ttcccgcgta ccactcgtag ccgcggtctt cccagaagcc gccattgccg
      121 cggccgaggt gtttcaggtc atccacggcc tcgatgcgca tgatgtactt ggcctgtttg
      181 tagccgagct ggcgctcgac ccgcaggcgc agcggggccc cgtgggccac gggcaggacg
      241 cggtcgttca tggcgtaggc gaggatggtc tgcgggtggt aggcgtcgat caggtcgatg
      301 ctctcatagt actggcccga gccgtccagg gtctgctcca gcgtgtcgcc gcagtggaag
      361 acgatgtagc gggcggtctt cttgagcccc gcctggtcga gcagcgggcc cagccgcgcg
      421 ccggtccact tggcgatcga ggaccagcct tcgacgcagt cgtggcgggt gatctgggtg
      481 cgcgacgcaa gcgcccgcag gtcggtgagg ctgagcgaca ggggcttgtc cacaaggccg
      541 tcgaccacca ggcggtagtc ggcgaagccc ttggtcttca gcgccacata gtcttcgtcg
      601 gtcggatcga tggagccgtt gggccggaag tcggaggaga tgtcggcgtg gccgaactcg
      661 cgggccagcg ccttgcggtc gacaaacagg cgctgggcgc ggcgggtcag gccctcggcg
      721 ctctgcagga aggcgacccc cttggggttg gcggtgatcc tgtcgcaggc gcccagcaca
      781 agggcggtgg ccgaggccag gcccgcctgc agccatccgc ggcgatttgc ggagacgctc
      841 atgccttctc tcccgcatcc cgaacgatcg cgtagcggcc ggtgatcatc gagcggatgt
      901 tgttccaggt ccccgaggcc accaccatga aaaggtggag caggacgaag cccacgatcg
      961 tgaacgccgc caggaagtgg atcgttcgcg ccgactgccg ccctccgaaa aagtccacca
     1021 gccagggcgt cgccgcgttg aagcccggcg acatgcaaag ccccgtcagc accatcaacg
     1081 gcagcaggat cagcaccacg ccgaggtagg ttcccttctg caggacgttg tagtggcgcg
     1141 cctcctcgcc cttggggaac ttgagccggg cgtgggtttt gatctcatgc cagacgtttt
     1201 tcggcgccac gtcgcgcctg gtcggcaaga ggtccttgcg gatgtgtccg ccgatcagcc
     1261 ccaccagcca gtagatcagc ccgttgatca cgaagagcca ggcgaagaag aagtgccagt
     1321 ggcgggcgtc ggccaggtcg cgctcgctgg gcactgtggc ccaggctgga aacgccacct
     1381 gctcctcaga ccctggtttg ccggaatagc cgaggacgcc ggtggtcctg aacttcgccg
     1441 agccgatcca ggtgacgcct tccatccttg cgccgcgctg ctcggcgccg atcgagaccc
     1501 acgggtgggc gaaggtcgcc ttctggcccc agtagagcgc cggatgggcg ccgaagatgt
     1561 tgagcccgct catcagcagc agggtgagcg ccaggacatt gatccagtgg gtcagtcgcg
     1621 tcaccgcggc gtggcggtag accaggacct tggcgggttt ggccatctgt cgaacgttcc
     1681 tgcgccggga gctcactgga gtactgccac acaagccatt cggacgcgag acggcgaagg
     1741 ttacagcgcc cgcgaccacc cctaagctgg gcgcggggcg tttggagggc tgggttttgg
     1801 gcgagggcgt ggag
//
LOCUS       DATAJL010000090         1651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14388,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000090 DATAJL010000000
VERSION     DATAJL010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1651
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14388"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..1368
                     /locus_tag="VHN39_01675"
     CDS             187..1368
                     /locus_tag="VHN39_01675"
                     /inference="COORDINATES: protein motif:HMM:NF024771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mandelate racemase/muconate lactonizing enzyme
                     family protein"
                     /protein_id="HEX2815074.1"
                     /translation="MKLTSVTAYAIRTPPPNFGGWYWYFIKLETDSGLTGWGESAVLF
                     SLYGLDRGFEALVEGVFARYLAGQNPMNRDMLTKLMYAGLSSQHSDYFAGGIISAFDI
                     AMWDICGKRLGVPVCDLLGGRYRSRIRTYTYLYEVGEGGDLAASASNWSTNPKRVGEI
                     AAQIVDQGFTGVKLDPLHYAIPGSLPIGPWEITIEAYDRAERTIEAIREAIGNRADIC
                     IGTHGQITPSVSRRLARRLEKYDPLWLEEPCPPENVEEMARVARSTTIPIATGERLAW
                     VHDFQRLFAAGACHYAQPDLGSCGGITAGKQIAALAEAHYVLMAPHVWGGPVITAAAM
                     QLDAAIPNFLIQESIYKSGGFFDEIVKEPFRWENGDLLLEDRPGIGIELDEAKLETYR
                     V"
BASE COUNT          300 a          539 c          527 g          285 t
ORIGIN      
        1 attcagggga gtttccctgc ttctcgacga gaaccgggga tcgaagagac ctccacggcg
       61 tgatcgcgac gccatgccag aggattctac cgcttggaga tgcttacctg aaagaactgt
      121 gtagcctgtc gctgacgcga cagcgccggc agtcgggcgg gccattctgg gcggagtcag
      181 ggcgcgatga aactcacctc ggtcacagct tacgccatcc gcacgccacc cccgaatttc
      241 ggcggctggt actggtactt cataaagctg gagaccgatt ccggcctcac cggatggggt
      301 gaaagcgcgg tgctgttcag cctgtacggc ctggaccgcg gtttcgaggc gctggtggaa
      361 ggcgtcttcg cgcggtacct cgcgggccag aaccccatga accgcgacat gctcaccaag
      421 ctcatgtacg cggggctatc ctcgcagcat tcggactatt tcgccggcgg gatcatctcg
      481 gccttcgaca tcgccatgtg ggacatttgc ggcaagcgac tgggcgtgcc ggtgtgcgac
      541 ctgctgggcg ggcgctaccg ctcgcgcatc cgcacctaca catacctcta cgaagtgggt
      601 gaaggcggcg atcttgcggc ttcggcctcg aactggtcga ccaatcccaa acgggtcggc
      661 gagatcgccg cccagatcgt cgaccagggg ttcaccggcg tgaaactcga ccccctgcac
      721 tacgccattc cgggcagtct gccgatcggc ccctgggaaa tcacgatcga ggcttacgat
      781 cgagccgaaa ggaccatcga ggcgatccgc gaggccatcg gcaaccgggc cgacatctgc
      841 atcggcaccc acggccagat cacgccctcg gtctctcgcc gcctcgccag gcggctggag
      901 aaatatgacc ctctctggct ggaggagccc tgcccgccgg agaacgtaga ggaaatggcc
      961 cgggtcgccc ggagcaccac catcccgatc gccacgggcg agcgcctggc ctgggttcac
     1021 gacttccagc ggctgttcgc cgccggggcc tgccactatg cccaacccga cctgggaagt
     1081 tgtgggggga tcaccgcggg caagcagatc gccgccctgg ccgaggccca ctatgtgctg
     1141 atggccccgc atgtgtgggg cggaccggtc atcacggcgg cggccatgca actggacgcc
     1201 gccattccca acttcctgat ccaggaaagc atctacaaat ccggcggctt cttcgacgag
     1261 atcgtgaaag aaccgttccg ctgggagaat ggggatctcc tcctggagga tcgcccgggc
     1321 atcggcattg agctcgacga ggccaagctc gaaacctatc gggtttgacc attctggcga
     1381 taaatcaggc aacggacctg gcggcggtct gatcgccgcc gcgcccaggc tccaagggtc
     1441 aaggcggaga caggttgctg ttcgcctgcc tgcaccgcca attcctggcc taacgcagtg
     1501 tattcagacg cgcacgctgc gtgggcgtga gcacactccc gatccggacc agggtggcga
     1561 tgtgcagacg cttgatgtcg cgttcggccg ccagcacccg gtcgagcgcg gcgaggacgt
     1621 tggcttcctc caccggttcg gtgctgagcg c
//
LOCUS       DATAJL010000091         2281 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40171,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000091 DATAJL010000000
VERSION     DATAJL010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2281
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40171"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VHN39_01680"
     CDS             complement(<1..451)
                     /locus_tag="VHN39_01680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HEX2815075.1"
                     /translation="MVDPRPVHQHPADLKVHPAGPGVIYTCPMHPQIRQIGPGHCPIC
                     GMTLEPETVTAEAQPNAELAAMTRRFWIALVLTVPVFVLEMGGHVMDLHALIAPVVSN
                     WVQFALATPVVVWAGAPFFARGWASLRTRNLNMFTLIAMGVGVSWLYS"
     gene            546..821
                     /locus_tag="VHN39_01685"
     CDS             546..821
                     /locus_tag="VHN39_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEX2815076.1"
                     /translation="MERENKPKLLNRLNRIEGQVRGVARMVEEGRYCIDILTQVQAVR
                     AALARVETEMLKDHLGHCIEGAIVSGDKAEQRRKSAELIQLLERATR"
     gene            818..2110
                     /locus_tag="VHN39_01690"
     CDS             818..2110
                     /locus_tag="VHN39_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815077.1"
                     /translation="MKALLAAVGAVALLTAAGAAAQEAPAPRAGHDMADMPGMDMSHG
                     MTGALGNYQMTREASGTSWQPDISEHAGLEVMRGPWMVMVHGLLNGVYDQQNGRRGDE
                     KSFVSGMFMVMAQRPVGDAGTLQLRAMLSPDPLMGPSGYPLLLATGETADGKTPLVDR
                     QHPHDLFMELSASYSRKLSLDDSAFVYAGLPGEPAFGPPAFMHRLSVMDSPEAPISHH
                     WLDSTHISFGVLTAGFVHDVWKIEASAYNGREPDQHRYDIETGALDSTAVRLSWNPTA
                     NWSLQTSWAEEKSPEQLDPGVNQRKVSASAIYTAPVGNFGWWSTTAAWGLRSSQGVDL
                     DAWVLESAIKTDANWTIFSRAERVQNDELTTVAGRHGPTFTVGKISVGAIHDWALSPH
                     VSFGLGGLYAVNFVPAALDAAYGNDPSGAMAFVRLKLH"
BASE COUNT          413 a          769 c          755 g          344 t
ORIGIN      
        1 cgctgtagag ccagctcacg ccaacgccca tggcgatcag cgtgaacatg ttgaggttgc
       61 gggtcctgag cgacgcccag ccgcgcgcga agaacggcgc cccggcccag accaccaccg
      121 gggtcgccag agcgaactgc acccagttcg aaaccaccgg cgcgatcagg gcgtgcaggt
      181 ccatgacgtg gccgcccatt tccaggacga agaccgggac ggtcagaacc agggcgatcc
      241 agaaccggcg cgtcatggcc gcgagttcag cattgggctg cgcctcggca gtcaccgtct
      301 cgggctccag cgtcatgccg cagatcgggc aatgtcccgg cccgatctgg cggatctgcg
      361 ggtgcatggg gcaggtgtag atgacgcccg gcccggctgg gtgaaccttc aggtcggcgg
      421 ggtgttgatg aacggggcga ggatcgacca tggcggtctc ctaatccgcg ggcatatacc
      481 ctcatggggg gatattgcaa ataccccatc ggggtatatg gtcgacgccg cgagaagggg
      541 cgcggatgga acgcgagaac aagccgaaac tgctcaatcg cctgaaccgg atcgagggcc
      601 aggtgcgcgg cgtggcccgg atggtcgagg aggggcgcta ctgcatcgac atcctcaccc
      661 aggtccaggc tgtgcgtgcg gccctggccc gcgtcgaaac cgaaatgctg aaggaccacc
      721 tgggccactg catcgagggc gcgatcgtca gcggcgacaa ggccgaacag cgccggaagt
      781 cggctgaact gatccagctg ctagagcgcg ccacccgatg aaggctctgc ttgccgcggt
      841 cggcgccgtc gccttgctga ccgccgccgg agccgcggcc caggaggcgc cggccccacg
      901 ggctggccat gacatggccg atatgcccgg catggacatg agccacggca tgaccggcgc
      961 gctcgggaat tatcagatga cccgcgaggc ctccggcacc tcctggcagc cggacatctc
     1021 ggaacacgcc ggcctggagg tcatgcgcgg gccctggatg gtcatggtcc acggcctgtt
     1081 gaacggggtc tacgaccaac agaacgggcg ccgcggcgac gagaaaagct tcgtctccgg
     1141 catgttcatg gtcatggctc agcgcccggt cggcgacgcc ggaacgctgc agctgcgcgc
     1201 catgctgagc ccggatccgc tgatgggccc aagcggctac cctctgctgc tcgccaccgg
     1261 cgagaccgcc gatggcaaga ccccgctggt cgaccggcag cacccgcacg acctcttcat
     1321 ggagctttcg gcgtcctaca gccgcaagct ctcgctcgac gacagcgcct tcgtctatgc
     1381 gggcctgccg ggcgagccgg ccttcggacc gccggccttc atgcatcgcc tgtcggtgat
     1441 ggacagcccc gaggcgccga tcagccacca ctggctggac tccacccaca tctccttcgg
     1501 ggttctgaca gctggatttg tccacgacgt ctggaagatc gaggcctcag cctacaacgg
     1561 ccgcgagccc gaccagcacc gctacgacat cgagaccggc gcgctggatt ccaccgccgt
     1621 gcgcctgtcg tggaacccga ccgccaactg gtccctgcag acctcgtggg ccgaggaaaa
     1681 gagccccgag cagctcgacc cgggcgtgaa ccagcgcaag gtctccgcca gcgccatcta
     1741 cacggccccc gtcggcaact tcggctggtg gtcgaccacg gcggcctggg ggctccgctc
     1801 cagccagggc gtggacctgg acgcctgggt gctggaaagc gccatcaaga ccgacgcgaa
     1861 ctggacgatc ttcagccgcg ccgagcgggt gcagaacgac gagctgacca ccgtggccgg
     1921 gcgccatggc ccgaccttca cggtcggcaa gatttccgtg ggcgcgatcc atgactgggc
     1981 gctgtcgccg cacgtgagct tcggcctggg cgggctctac gccgtcaact tcgtgcccgc
     2041 cgcgctcgac gcggcctacg ggaacgaccc gagcggggcc atggccttcg tccggctgaa
     2101 gctccactag tgtgctgggt ttgaagttcg ccttgttcag gtccaggcgc tgagcgaact
     2161 tcaaatccaa agaagcgcac tagaaacata ggcttgcaag tgtcctgatc gattccgaag
     2221 ttcgtccggc gccaaccgca aacgcttgcg aacttcggaa tcgggacact agatcgagga
     2281 t
//
LOCUS       DATAJL010000092         5727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_1476,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000092 DATAJL010000000
VERSION     DATAJL010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5727
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..568
                     /locus_tag="VHN39_01695"
     CDS             <1..568
                     /locus_tag="VHN39_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4908 domain-containing protein"
                     /protein_id="HEX2815078.1"
                     /translation="PLLKFENSFEVWALQAQPAPRGDTIYKNDLGEPVLRATRMGGVT
                     VFTDQRPGGAAAALAGIGNPLKLAIMGPQALLERLAQASARASRAARRLIPFEAGRPG
                     QEATPTSAPLIADAAMVTSEAVVRMTKRPDARRLLDHILKVQLVEGRMASAQLSNEGV
                     LQVTVAPPQGMAGRPSSDRIVQVAESFR"
     gene            complement(578..1339)
                     /gene="gloB"
                     /locus_tag="VHN39_01700"
     CDS             complement(578..1339)
                     /gene="gloB"
                     /locus_tag="VHN39_01700"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004416 - hydroxyacylglutathione hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0019243 - methylglyoxal catabolic process
                     to D-lactate via S-lactoyl-glutathione [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HEX2815079.1"
                     /translation="MSLTVHQFPCLSDNYGFLAHDEATGKTACIDTPEVAPILAALKA
                     RGWTLDFILNTHWHPDHAGGNAEIVKATGATVVGPAEVTKLTPIDREVKGGDVVMLGE
                     TRFEVIETGGHTLGHIAYFDAADRIAFVGDTLFALGCGRLFEGTAEQMWTSLQRLAAL
                     PDDTTVYCAHEYTASNARFALSVDDAPALKARAAEIFAMRERGEPTVPTTIGLEKATN
                     PFLRAPALAGRVGAAGEADYKAFGAVRAAKDNFKG"
     gene            1492..2304
                     /locus_tag="VHN39_01705"
     CDS             1492..2304
                     /locus_tag="VHN39_01705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2815080.1"
                     /translation="MRRDVLDLRQFYASDLGRAARAMVGRKVIETWGDARGLDVLALG
                     YATPFVAPARYAARRVVGAMPAQQGVEIWPGGERNLTTLVGEDSLPFPNALFDRILVV
                     HGIEESPDALALLREVWRVLAPSGRVVVAVAARNGLWANSEKTPFGHGRPYSRGQLAE
                     LLREAELEPSGWTRALYVPPVNWLAGWAEGFEQTGSRLWPGFAGLLLMEAVKQTFAVK
                     PKGHAARVRRARPLLAPAPVSQAEGTHQRRALLDPEGERPSFTVETNGRARP"
     gene            2301..2645
                     /locus_tag="VHN39_01710"
     CDS             2301..2645
                     /locus_tag="VHN39_01710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX2815081.1"
                     /translation="MKMIVAVIKPSRLDAVLDAVTEAGASGMTVTEVRGYGRQRGKTE
                     VYRGAEYEVKLLPKVKLEIAVPTDAVDAVVEAITRAANTGKIGDGKVFVMDLESALRI
                     RTGDKDAAAITG"
     gene            2683..3231
                     /locus_tag="VHN39_01715"
     CDS             2683..3231
                     /locus_tag="VHN39_01715"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2815082.1"
                     /translation="MADLSPPPVIDPTAPMIARTDRIVIDRPQKALFEWNQTQKLEDN
                     LPATGALPGVVGTTQLTPGDWGVPGARRIVHLSDGGSATEQILEMIPGERFRYQVWDY
                     TTAAARPIAFAIGEFRYVALDARRTEIVWTYAFRLRGDRFPGVLGPLGRWLLKVAFLD
                     RAYAVLMAETLKAMKTSAERDL"
     gene            complement(3253..3957)
                     /gene="metW"
                     /locus_tag="VHN39_01720"
     CDS             complement(3253..3957)
                     /gene="metW"
                     /locus_tag="VHN39_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis protein MetW"
                     /protein_id="HEX2815083.1"
                     /translation="MSATREDFAEILRLVRPGARVLDVGCEDGELLELLSREKRIDGQ
                     GLEISPAGVSACLAKGLAVVQGDGDRDLDHFPTRAFDYAILSKTLQQMREPRHVLSEL
                     LRIADQAIVSVPNFGHWRMRVSLMARGRMPETRALPDPWWSTPNIHLCTLRDFTDLCR
                     ELNLRVDACAALSGGKPARPIRPDGLLENWRSETALFLLSRRAEGEPDAVPQNLFGEV
                     DLPKPDAPKSRRRAKA"
     gene            complement(3960..5114)
                     /locus_tag="VHN39_01725"
     CDS             complement(3960..5114)
                     /locus_tag="VHN39_01725"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HEX2815084.1"
                     /translation="MDAAAEPSPANETGGGVWRFAAGKALRLESGAKLEPLEVAYKTY
                     GRLNEARTNAVLVCHALTGDQHAGSVNPVTGRPGWWDRVIGPGLPLDPERYFIIATNV
                     IGGCMGSTGPASTNPKTGQPYGLAFPVITIADMVRAQAMLIEALGIETLFAVVGGSMG
                     GMQVLQWAADYPGKLFSAVCIAAAPRHSAQNIAFHEVGRQAIMADPDWRAGAYETEGV
                     RPEKGLAVARMAAHITYLSEAALQRKFGRELQRDGLSWGFDADFQVESYLRHQGTSFV
                     DRFDANSYLYITRALDYFDLAAQHGGVLAEAFVKARGVRFCVLSFSSDWLYPTPESRD
                     IVRALNAAGCRASFAEIETDKGHDAFFLDEPQFDAALRGFFTAAAQTRGL"
     gene            5230..>5727
                     /locus_tag="VHN39_01730"
     CDS             5230..>5727
                     /locus_tag="VHN39_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX2815085.1"
                     /translation="MDRLILFRHGKAEPESASGEDFDRHLAPRGVRESAEMGAHLADM
                     GFLPEVVLVSPAMRTRETWAAIEPHLPKAKARFEDELYHADSGAVRADAERAGKGAGT
                     VMVVGHNPGLQELTVQLLSEGSAPASLIARATRQFPTAAVAVFLFDNNGRPHFDGLFF
                     PQHDMG"
BASE COUNT          844 a         1949 c         2085 g          849 t
ORIGIN      
        1 gccgctgctg aagttcgaaa acagcttcga ggtctgggcc ctgcaggccc agcccgcccc
       61 gcgtggcgac accatctaca agaacgacct gggcgagccc gtgctgcgcg ccacccgcat
      121 gggcggggtg acggtcttca ccgaccagcg gccgggtggc gcggccgcgg cgctggccgg
      181 catcggcaat cccctgaagc tggcgatcat ggggccgcag gccttgctgg agcggctggc
      241 ccaggccagt gcgcgggcca gccgcgccgc ccgccggctg atccccttcg aggcgggccg
      301 gcccggccag gaggcgacgc ccacctcggc ccccctgatc gccgacgcgg ccatggtgac
      361 cagcgaggcg gtggtgcgga tgaccaagcg ccccgacgcc cgcaggctgc tggatcacat
      421 cttgaaggtg cagctcgtcg agggccgcat ggcctcggcc cagctgagca acgaaggcgt
      481 cctgcaggtc accgtcgccc ccccgcaggg catggccggc cgaccctcct ccgaccgcat
      541 cgtgcaggtc gccgagagct tccgctaatc cgcgacgtca gcccttgaag ttgtccttgg
      601 ccgcgcgcac ggcgccgaag gccttgtagt cggcctcgcc ggccgctccg acccggcccg
      661 ccagcgccgg cgcccgcagg aaggggttcg tcgccttttc caggccgatg gtggtgggca
      721 cggtgggctc gccgcgttcg cgcatggcga agatctccgc ggcccgggcc ttgagcgccg
      781 gggcgtcgtc caccgagagc gcgaagcggg cgttggaggc ggtgtattcg tgagcgcagt
      841 agacggtggt gtcgtccggc agggcggcca gccgctgcag gctggtccac atctgctcgg
      901 cggtgccctc gaagagccgc ccgcagccca gcgcaaagag ggtgtcgccc acgaaggcga
      961 tgcggtcggc ggcgtcgaaa taggcgatgt ggcccagggt gtggccgccg gtttcgatca
     1021 cttcgaagcg ggtttcgccc agcatcacca cgtcgccgcc cttcacctcg cggtcgatgg
     1081 gggtgagctt ggtcacctcg gccggcccca cgacggtggc gccggtggcc ttgacgatct
     1141 ccgcgttgcc gccggcgtgg tcggggtgcc aatgggtgtt gaggatgaaa tcgagggtcc
     1201 agccccgggc cttgagcgcc gccaggatcg gggccacttc aggcgtgtcg atacaggcgg
     1261 ttttcccggt cgcctcgtca tgggcgagga agccgtagtt gtccgaaagg caggggaact
     1321 ggtggacggt gagcgacatc ggcgaagcct ccagacgaag gggacagacc ccgagcatcg
     1381 cgctgcgatg ctcagagact tgccttctta ccacgtcagg caagggcctg acgtggtggc
     1441 cgacgcgatc taggctggcg caaggcctta gtcgagcata gccatcgccc catgcgccgc
     1501 gacgtcctgg accttcgaca gttctacgcc tccgacctgg gccgggcggc gcgcgccatg
     1561 gtcggccgca aggtcatcga gacctggggc gacgcgcgcg ggctggacgt tctggcgctc
     1621 ggctatgcga ccccgttcgt ggcgccggct cgatatgcgg cgcgccgggt ggtgggggcc
     1681 atgccggccc agcagggcgt cgagatctgg ccgggcggcg agcgcaacct gacgaccctg
     1741 gtgggcgagg acagcctgcc tttccccaac gcgctcttcg accgcatcct ggtggtgcac
     1801 ggcatcgagg agagccccga cgcgctcgcc ctgctgcgcg aggtctggcg ggtgctggcg
     1861 ccctcgggtc gggtggtggt ggcggtggcc gcgcgcaacg ggctttgggc caacagcgag
     1921 aaaaccccct tcggccatgg ccggccgtac agccgtggcc agctcgccga gctgctgcgc
     1981 gaggcggaac tggagccgtc gggctggacg cgggccctct atgtgccgcc ggtgaactgg
     2041 ctggccggct gggcggaggg cttcgagcag acgggctcca ggctctggcc ggggttcgcg
     2101 ggcctgctct tgatggaggc ggtcaagcag accttcgcgg tgaagcccaa aggccatgcg
     2161 gcgcgcgtgc gccgcgcgcg cccgcttttg gcgccggcgc ctgtttctca ggcagaggga
     2221 acccatcagc gccgcgccct cttggacccc gagggcgaac gccctagctt tacagtcgaa
     2281 accaacggaa gggctcgccc atgaagatga tcgtcgcggt catcaagccg agccgcctcg
     2341 acgcggtgct ggacgcggtc accgaggccg gcgcctcggg catgacggtc accgaggtgc
     2401 gcggctacgg ccgccagcgc ggcaagaccg aggtctaccg gggcgcggaa tatgaggtga
     2461 agctgctgcc caaggtgaag ctggaaatcg ccgtgcccac cgacgccgtc gacgccgtgg
     2521 tcgaggccat cacgcgcgcc gccaacaccg gcaagatcgg cgatggcaag gtcttcgtca
     2581 tggacctgga aagcgcgcta cgcatccgca ccggcgacaa ggacgccgcc gccatcacag
     2641 gctaggctcc tgtagacccg aacaaccgcc caggcatttg tcatggccga tctcagcccg
     2701 ccgccggtca tcgatcccac agccccgatg atcgcgcgca ccgaccggat cgtgatcgac
     2761 cggcctcaga aggccctgtt cgagtggaac cagacccaga agctggaaga caacctgccc
     2821 gccaccggcg ccctgcccgg cgtggtcggc acgacccagt tgacgcccgg cgactggggc
     2881 gttccgggcg cgcgccggat cgtgcatctg agcgacggcg gcagcgccac cgagcagatc
     2941 ctggagatga tccccggcga gcggttccgc tatcaggtct gggactacac caccgccgcg
     3001 gcgcgcccga tcgccttcgc catcggcgag ttccgctatg tggcgctgga cgcgcgccgg
     3061 accgagatcg tctggaccta cgccttccgc ctgcgcggcg accggttccc cggtgtcctg
     3121 ggtcccctcg gccgctggct cctgaaggtg gccttcctcg accgcgccta tgcggtgctc
     3181 atggccgaga ccctgaaggc catgaagacc agcgccgagc gcgacctcta gcgtcgtccc
     3241 gctggcgagc ggctaggcct tcgcccgccg cctagatttt ggtgcgtccg gcttgggcag
     3301 atcgacttcg ccgaagaggt tctgcggtac ggcgtccggc tcgccctcgg cgcggcggct
     3361 gagcaggaag agggcggttt ccgaacgcca gttttccagg aggccatccg gcctgatcgg
     3421 ccgcgcgggc ttgccgccgg agagcgccgc gcaggcgtcg accctcaggt tcagctcccg
     3481 gcagaggtcg gtgaaatcgc ggagcgtgca gaggtggatg ttgggcgtcg accaccaggg
     3541 atcggggagc gcccgggtct ccggcatacg gccgcgcgcc atcaacgaga cccgcatccg
     3601 ccagtggccg aagttcggca ccgagacgat ggcctggtcg gcgatgcgca ggagctccga
     3661 gagcacgtgg cggggctcgc gcatctgttg cagggtcttg gacaggatcg cgtagtcgaa
     3721 ggcccgcgtt gggaagtggt cgaggtcccg gtcgccgtcg ccctggacca cggccaggcc
     3781 cttggcgagg caggccgaga cgccggccgg gctgatctcc agcccctggc cgtcgatgcg
     3841 cttctcacgg ctcagcagct ccaggagttc gccgtcctcg cagcccacgt ccagcacccg
     3901 cgcgccggga cgcacgagcc gcaggatctc ggcgaagtct tcgcgcgtgg cggacaccgt
     3961 cagagacccc gcgtctgggc ggcggcggtg aagaagccgc gcagcgccgc gtcgaactgt
     4021 ggctcgtcca ggaagaaggc gtcgtggccc ttgtcggtct cgatctcggc gaagctggcg
     4081 cggcagccgg cggcgttcag cgcacggacg atgtcgcggc tttccggtgt cggatagagc
     4141 cagtccgacg agaaggagag cacgcagaag cgcacgccgc gcgccttgac gaaggcctct
     4201 gccaggaccc cgccgtgctg ggcggccagg tcgaagtagt ccagcgcccg ggtgatgtag
     4261 aggtaggagt tggcgtcgaa acggtcgacg aagctggttc cctggtggcg aaggtagctc
     4321 tccacctgga aatcggcgtc gaagccccat gacaggccgt cgcgctgcag ctcacggccg
     4381 aacttccgct gcagggcggc ctccgacagg taggtgatgt gcgcggccat acgggccacg
     4441 gccaggccct tttccgggcg cacgccctcg gtctcatagg cgccggcgcg ccagtcggga
     4501 tcggccatga tcgcctggcg gccgacctcg tggaaggcga tgttctgggc ggagtggcgc
     4561 ggggcggcgg cgatgcagac ggcgctaaac agcttgcccg gatagtcggc cgcccactgc
     4621 agcacctgca tgccgcccat ggagccgccg accacggcga acagggtctc gatgcccagc
     4681 gcctcgatca gcatggcctg ggcgcggacc atgtcggcga tggtgatcac cgggaaggcc
     4741 aggccatagg gctggccggt cttggggttg gtggaggcgg gcccggtcga gcccatgcag
     4801 ccgccgatca cattggtggc gatgatgaaa tagcgctccg ggtcgagcgg caggcccggg
     4861 ccgatcaccc ggtcccacca gccgggccgc ccggtcaccg gattgaccga gcccgcgtgc
     4921 tggtcgccgg tgagcgcatg gcagaccagg acggcgttgg tccgggcctc gttcaaccgg
     4981 ccgtaggtct tgtaggccac ttccaggggc tcgagcttcg ccccggactc caggcgcagc
     5041 gccttgccgg ccgcgaagcg ccacacgccg ccgccggtct cgttcgcagg gctgggctcg
     5101 gccgcggcgt ccatggcggc cttaggaccg ccaagccctt tgtctgtcaa tggcgccgct
     5161 cctgcgtcac ggcggcttcg cagccggcgc gggcgccgct atgaaggcgg actcaggggt
     5221 ggagtgtcga tggaccggct gatcctattc cgccatggca aggccgaacc ggagtccgcc
     5281 agcggcgagg acttcgaccg ccatctcgcg cccagggggg tgcgggagtc cgcggagatg
     5341 ggcgcccacc tggccgatat gggcttcctg ccggaggtgg tgctggtctc gccggccatg
     5401 cgcacccgcg agacctgggc ggcgatcgag ccgcatcttc ccaaggccaa ggcgcggttc
     5461 gaggacgagc tctatcacgc tgattccggc gcggtgcgcg cggatgccga gcgcgccggc
     5521 aagggcgccg gcacggtgat ggtggtgggc cacaatccgg gcctgcagga gctgacggtg
     5581 cagctgctgt cggagggctc ggcgccggcg tcgctgatcg cgcgggcgac gcggcagttt
     5641 ccgaccgcgg cggtggcggt gttcctgttc gacaacaacg gacggccgca cttcgacggc
     5701 ctgttctttc cgcaacacga tatgggg
//
LOCUS       DATAJL010000093         2296 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_90864,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000093 DATAJL010000000
VERSION     DATAJL010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90864"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..228
                     /locus_tag="VHN39_01735"
     CDS             <1..228
                     /locus_tag="VHN39_01735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815086.1"
                     /translation="GRVEEAEATLRKAADTVPGFEGQSYYAAFLARHGRGDEARELIA
                     DMDKRLRTVTPQFRKEGRAWRDLAAQALNKG"
     gene            413..1225
                     /locus_tag="VHN39_01740"
     CDS             413..1225
                     /locus_tag="VHN39_01740"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815087.1"
                     /translation="MRLASTTLILAGAASALALVAQPAAAATAISGDLNIVADAYTHS
                     GPTVTSMDSHSWSNVPATLNVTATAVANGGIYRDHNERVSSFGTAQATWASANAGAVD
                     FTNYGWNFSVKDNDPISNGADLDALRPGSGADWSYDFQATADGVFQMNYNVSASGTTD
                     GLFGWAIDFNGVSVGPDLTTSQFANDPTTSGVVTEAVTKGQFYSVDLFGNPNIGACCA
                     RNFSGSMDGTFDWNITEGGGVPEPAAWALMLVGFGGMGAVLRSRRKLVTAAA"
     gene            complement(1288..>2296)
                     /locus_tag="VHN39_01745"
     CDS             complement(1288..>2296)
                     /locus_tag="VHN39_01745"
                     /inference="COORDINATES: protein motif:HMM:NF040438.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase domain-containing protein"
                     /protein_id="HEX2815088.1"
                     /translation="PLKKANPARYATLVHPGDNYSFDMFSQAGAAVKSGKVLGPLKAK
                     HVIATGESQSAVFMTTYIDAIDPLARVFDGFYVHSRFGGAPPPEAASMRGGPNARGPS
                     GVKMRPNLRVPVMTLISETDLIGSGLSGFWAADQADNDKLRIWEMPGTAHVDNYMFSI
                     GGFDDGSASMDKIAALWKPTDALFGAKMAHPINASPTHHYVAMAALAALDRWVATGKA
                     PPKAARMTTEPAATAGQPPKLALDANGNTKGGIRTPWVDAPTAKLSGFGNTGGPFGFL
                     VGTTQPFDGAALAKLYPGGKADYLKRFDASLGAAVKGGFILKADEPEIRALAAANYPA
                     S"
BASE COUNT          347 a          805 c          783 g          361 t
ORIGIN      
        1 ggccgggtcg aagaggcgga ggcgaccctc aggaaggcgg ccgacaccgt ccccggcttc
       61 gagggccaga gctactacgc cgccttcctg gcccgccacg gccgcggcga cgaggcgcgt
      121 gagctgatcg ccgacatgga caagcgcctg cggaccgtga cgcctcaatt ccgcaaggaa
      181 ggccgcgcct ggcgcgacct ggccgcccag gcgctgaaca agggctaggg cgcgggacac
      241 gccgtccgcc cctgcggatt cgcgggccgg acttctcgtc aggcgcaagt tcctcgcatt
      301 cggagcaagt tcctcgcacc ctcggtgcaa gcgtttgatc ttggctttgg gacggcattc
      361 cctccggcaa cttcgggctc ccgggctcga gtcaccccag ggagtcgcga tcatgcgtct
      421 tgcatccacc accctcattc tcgccggggc cgcctcggcc ctggcgctag tcgcccagcc
      481 cgcggccgcg gcgaccgcca tcagcggcga tctcaacatc gtcgccgacg cctacaccca
      541 cagcggcccg accgtgacca gcatggacag ccacagctgg tcaaacgttc cggccaccct
      601 caacgtcacc gcgaccgcgg tggccaacgg cgggatctat cgcgatcaca acgagcgcgt
      661 gtcatccttc gggaccgccc aggcgacctg ggcgtccgcc aatgcggggg cggtcgactt
      721 cacgaactat ggctggaact tcagcgtcaa ggacaacgac ccgatcagca acggcgccga
      781 cctcgacgcc ctgcgtcctg gcagtggcgc cgactggtcc tatgacttcc aggccaccgc
      841 cgatggcgtg ttccagatga actacaatgt gtcggcgtcc ggcacgacgg acggcctgtt
      901 cggctgggcc atcgacttca acggcgtctc cgtaggcccg gacctcacca cctcccagtt
      961 cgccaacgac ccgaccacgt cgggcgtggt gaccgaggcc gtgacgaagg gtcaattcta
     1021 ctcggtcgac ctcttcggca atcccaacat cggcgcctgc tgcgcgcgaa acttctcggg
     1081 ctccatggac gggaccttcg actggaacat caccgagggc ggcggcgtgc cggagccggc
     1141 cgcctgggcg ctgatgctgg tgggcttcgg cggcatgggc gcggtgctgc gctcgcgccg
     1201 caagctggtg accgccgcgg cctgatccgc gtggggcgtg gggccggcgc gcggaggttc
     1261 cgccgccggc cttccgaacg ccccggccta acttgcgggg tagttcgccg ccgccagggc
     1321 gcggatttcc ggctcgtccg ccttcaggat gaagccgccc ttcaccgccg cgcccagcga
     1381 agcgtcgaag cgtttcaggt agtcggcctt gccgcccgga tagagcttgg caagcgccgc
     1441 cccgtcgaac ggctgcgtcg tgcccaccag gaagccgaac ggcccgcctg tgttgccaaa
     1501 gccggagagc ttggcggtcg gcgcgtcgac ccagggcgtg cggatgccac ccttcgtgtt
     1561 tccgttggcg tcgagggcga gcttcggcgg ctggccggcg gtcgcggcgg gctcggtcgt
     1621 catgcgcgct gccttgggcg gagccttgcc ggtggccacc cagcggtcca gcgccgcgag
     1681 cgcggccatg gccacataat ggtgcgtcgg cgaggcgttg atcggatgag ccatcttggc
     1741 gccgaacagc gcgtcggtgg gcttccaaag ggcggcgatc ttgtccatcg acgcggagcc
     1801 gtcatcgaag ccgccgatgg agaacatgta gttgtccacg tgcgccgtgc ccggcatctc
     1861 ccagatgcgg agcttgtcgt tgtcggcctg gtcggcggcc cagaagcccg agaggcctga
     1921 accgatcagg tcggtctcgg agatcagcgt catcaccggc acgcgcaggt tcggccgcat
     1981 cttcacgccc gagggcccgc gcgcgttcgg tcctccgcgc atggaggcgg cctccggcgg
     2041 cggcgcgccg ccgaagcgcg agtggacgta gaagccgtcg aagaccctgg ccagcgggtc
     2101 gatagcgtcg atgtaggtgg tcatgaacac cgccgactgg gactcacccg tggcgatgac
     2161 gtgcttggcc ttcagcggcc ccagcacctt gccgctcttc accgccgcgc cggcctgcga
     2221 gaacatgtcg aaggaatagt tgtcgccggg atggaccagg gtcgcgtaac gcgcgggatt
     2281 ggccttcttc aggggc
//
LOCUS       DATAJL010000094         3621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40193,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000094 DATAJL010000000
VERSION     DATAJL010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40193"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1144
                     /locus_tag="VHN39_01750"
     CDS             <1..1144
                     /locus_tag="VHN39_01750"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815089.1"
                     /translation="AEKANLAKSQLLAAASHDLRQPLHALSLFSGSLQSLALDDEAKD
                     VAARIQANVAAMEKLFNGLLDISRLEAGVVQSHREPVSCQDLFDRLAGYFDPVAEQQG
                     LDLRFRDTGLWIDSDAALSEQICVNLVTNALRYTRTGGILVAARRRGGRVSIEVADTG
                     IGIARADQARIFDEFVQIGNPERDRGKGLGLGLAIAQRLAAILESEIEIISVEGRGSR
                     FCFSLPGAEPAKTVRVAAAPDLMQGLRLLLIDDDAMVREGAGLLLRQWGVEAAIVADL
                     AEAEARIADLFKDGRGARFDICLADYRLPGEVNGLGVIARLSALAGAPETFCLVTGDM
                     GADVLAAADAAGVPIIHKPLHPARLRALLNHLVAGGVERRGHARTG"
     gene            1249..2145
                     /locus_tag="VHN39_01755"
     CDS             1249..2145
                     /locus_tag="VHN39_01755"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815090.1"
                     /translation="MKRLILLAAVLALAASPQMVAAKAIGHPAIPAAIFTDPPADAAH
                     PPRMEVLHIPSGGVKINGVAYLAAGAGPHPTLVLLHGLPGNEKNLDLAQAVRRAGWNV
                     VTFNYRGSWGSPGTFSFEGNLADARAVLAFVRDPANAAPLGIDTKKLVIAGHSMGGWV
                     TALTAAQDSGLAGAVMISAADMGGRGAVPGAKPMIIKSMSEDMETLSSTTPEKMADEI
                     IGFSPRLSFNAEVAKGLSTKPLLVLTSDDGLAPNAEKLVKAIRADGGTQATLHHEATD
                     HSWSGKRIALEALVIAWLQGLK"
     gene            complement(2150..2599)
                     /locus_tag="VHN39_01760"
     CDS             complement(2150..2599)
                     /locus_tag="VHN39_01760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815091.1"
                     /translation="MEVRHVFPTLSLRMVRLASALVVLACAVVLVSPLSIRAAILPDS
                     IQLHALTFYGVTAGAYGLLPFVRRGDIAMVAMWVVLGVGIAPCFLGQELSAPHMFADM
                     AGVLMGAAPVYIARFRQLAQGDVRPHRRREVEDGVDIAESKAAAPQA"
     gene            complement(2732..3106)
                     /locus_tag="VHN39_01765"
     CDS             complement(2732..3106)
                     /locus_tag="VHN39_01765"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2815092.1"
                     /translation="MTGQPRVVSTQFVLAVPSLAEAEAYWCGVLGFEALESPEGWLFL
                     SLDGHRVMLGECPDDLPLTAVGSHSYFGYFTLEDLDAYAAAIAARGAIILSGPADKPW
                     GMREIAVATPAGHRMMFASRMA"
     gene            3183..3377
                     /locus_tag="VHN39_01770"
     CDS             3183..3377
                     /locus_tag="VHN39_01770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815093.1"
                     /translation="MAEISDIAVYQKLTELADELDQMAAEGASLVGGVALETAAKTVR
                     GMAGAVYQHIMADRDGPKDS"
     gene            complement(3374..>3621)
                     /locus_tag="VHN39_01775"
     CDS             complement(3374..>3621)
                     /locus_tag="VHN39_01775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815094.1"
                     /translation="AEAPLTVDSTLRDLVLNPKTRPVIEKHMPGFPDRIETDPELAER
                     FGGISLSGLQLDPHVQGMTPAGLAKIGAELAEAQRPS"
BASE COUNT          587 a         1202 c         1294 g          538 t
ORIGIN      
        1 ggccgagaag gcaaacctcg ccaaatccca gttgctggcc gccgccagcc acgacctgcg
       61 ccagccgctc cacgcgctct ctctgttctc gggctccctg cagtcgctcg ccctggacga
      121 cgaggccaag gatgtggccg cgcgcatcca ggccaatgtc gcggccatgg agaagctgtt
      181 caacggcctc ctggacatct cgcgccttga ggccggcgtg gtgcagagcc accgcgagcc
      241 ggtgtcgtgc caggacctgt tcgaccggct ggccggctat ttcgatccgg tggccgagca
      301 gcagggcctc gacctcaggt tccgcgacac cggcctctgg atcgatagcg acgcggcgct
      361 gagcgagcag atctgcgtga acctggtgac caatgcgctg cgctacaccc gcaccggcgg
      421 catattggtg gcggcgcgcc ggcgcggcgg gcgcgtctcc atcgaggtgg ccgacaccgg
      481 catcggcatc gcgcgcgccg accaggccag gatcttcgac gagttcgtgc agatcgggaa
      541 tcccgagcgc gaccggggca agggtctggg gctgggcctg gccatcgcgc aacggctggc
      601 ggcgatcctg gagagtgaga tcgagatcat ctccgtggaa ggccgcggat cgcggttctg
      661 tttcagcctg cccggcgccg agccggccaa gaccgtccgg gtcgccgcgg cgccagacct
      721 gatgcagggc ctgcgcctgt tgctgatcga cgacgacgcc atggtgcgcg agggcgcggg
      781 cctgctgctg cggcaatggg gcgtggaggc ggccatcgtg gcggacctgg cggaggccga
      841 ggcgcggatc gccgatctct tcaaggatgg gcgcggcgca cggttcgaca tctgcctggc
      901 cgactatcgc ctgccggggg aggtcaatgg cctgggcgtc atcgcgcggc tgtcggcgct
      961 cgccggcgcg cccgagacct tttgcctggt caccggggac atgggcgcag acgtgctggc
     1021 cgccgccgac gccgcggggg tgccgatcat ccacaagccc ttgcatccgg cgcggctgcg
     1081 ggcgttgttg aaccacctgg tcgcgggcgg cgtggaacgg cgcggccacg cccggaccgg
     1141 ttgaggcttc cccgacttca agcctcctcg acttgaagct tccgcgatga gcagggtcgt
     1201 ggttaaatgt acgtcgtaaa ttactgctca agtaaattgg agagccccat gaagcgcttg
     1261 atcctgctgg ccgctgtcct ggcgctcgcc gcctcgccgc agatggtggc agccaaggcg
     1321 atcggccacc cggctatccc ggcggcgatc ttcaccgatc cgccggccga cgcggcgcac
     1381 ccgccccgga tggaggtgct gcatatcccc agtggagggg tgaagatcaa cggcgtggcc
     1441 tatctggccg cgggcgccgg gccgcatccg acgctggtgc tgctgcacgg cctgccgggt
     1501 aacgagaaga acctggacct ggcccaggcg gtgcgccggg ccggctggaa cgtcgtgacc
     1561 ttcaactatc gcggctcctg gggcagcccc gggaccttca gcttcgaggg caacctggcc
     1621 gacgccaggg cggtgctggc cttcgtgcgc gatccggcca acgccgcgcc gcttgggatc
     1681 gacacgaaaa agctggtcat cgccggccac agcatgggcg gctgggtgac ggcgctgacg
     1741 gcggcccagg acagcgggct ggccggcgcg gtgatgatct cggcggcgga catgggcgga
     1801 cgcggcgccg tgccgggcgc caagccgatg atcatcaagt cgatgtcgga agacatggag
     1861 accttgtcgt cgaccacgcc ggagaaaatg gccgacgaga tcatcggctt ttccccgcgc
     1921 ctgtcgttca acgccgaggt ggccaagggg ctttcgacca agcccctgct ggtgctgacc
     1981 tccgacgacg gcctggcgcc caatgcggag aagctggtga aggcgatccg ggcggacggc
     2041 gggacgcaag ccaccctgca tcacgaggcc accgaccaca gctggagcgg caagcgcatc
     2101 gcgctggagg cgctggtgat cgcctggctg cagggcctga aataggcctc taggcttggg
     2161 gcgcggcggc cttggactcg gcgatatcga cgccgtcttc gacctcgcgc cgacgatggg
     2221 gccggacgtc gccctgggcg agctggcgga agcgggcgat gtagacgggg gccgcgccca
     2281 tcaggacgcc cgccatgtcg gcgaacatgt gcggcgccga aagctcctgg ccgaggaagc
     2341 agggggcgat cccgaccccc agcactaccc acatggccac catggcgatg tcgccgcggc
     2401 gtacgaaggg cagcaggccg taggctccgg ccgtgacgcc gtagaaggtg agcgcgtgga
     2461 gctggatgct gtcgggcagg atcgcggcgc ggatcgacag tggcgagacc agcaccaccg
     2521 cgcaggccag caccaccagc gcggacgcca gccgcaccat ccgcagggaa agcgtcggaa
     2581 acacgtgtcg gacttccatc agaaaaccgg cttccccaat gagaggttgg ccgaattcgc
     2641 ggtcatcact cacctctagg ctggggcccg tcaattcagg gtgaattttc gtggttagcg
     2701 acagctgaaa cgcgaggcag agcgccgcga actaggccat gcggctggcg aacatcatcc
     2761 ggtggccagc gggcgtggcg accgcgatct cgcgcatgcc ccagggcttg tcggccgggc
     2821 cggacaggat gatcgcgccg cgcgcggcga tggccgcggc ataggcgtcg aggtcttcca
     2881 gagtgaagta gccgaaatag ctgtgcgacc cgactgcggt cagcggcagg tcgtcggggc
     2941 attcgcccag catcacacga tggccgtcga ggctgaggaa cagccagcct tcggggctct
     3001 cgagcgcctc gaatccgagc acgccgcacc agtaggcctc ggcctccgcc aggctcggaa
     3061 ccgccaggac gaactgggtc gagaccaccc gcggctgacc ggtcataggc ttgcctccgc
     3121 tcccaggcgg cgttccatgg cgcttgccga cagcctagcg gtctctgtag gggtggtcac
     3181 ccatggccga gatctccgac atcgccgtct atcagaagct cacggaactg gccgacgagc
     3241 tggaccagat ggccgccgag ggcgcgagcc tggtgggcgg agtcgctctg gagaccgcgg
     3301 ccaagaccgt tcgaggcatg gctggcgccg tctaccagca catcatggcc gaccgcgacg
     3361 gcccgaagga cagctagctc ggcctctggg cctcggccag ttccgcgccg atcttggcca
     3421 ggcccgccgg cgtcatgccc tggacgtgcg ggtcgagctg caggcccgac aggctgatgc
     3481 cgccgaaccg ctcagccagt tccggatcgg tctcgatgcg gtcgggaaag cccggcatgt
     3541 gcttctcgat caccggccgc gtcttcggat tgagcacaag gtcgcgaagg gtgctgtcga
     3601 cggtgagcgg cgcctcggcg a
//
LOCUS       DATAJL010000095         2013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14411,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000095 DATAJL010000000
VERSION     DATAJL010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2013
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14411"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1190
                     /locus_tag="VHN39_01780"
     CDS             <1..1190
                     /locus_tag="VHN39_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEX2815095.1"
                     /translation="SLAAHDVFNNVARTTVEAMAAVGGQTQSLHTNSLDEALALPTDF
                     SARISRNTQLFLQAESGQTRVIDPWGGSYYIERLTADLAARALTHIAEVEALGGMAKA
                     IENGLPKRRIEEASARTQARIDAGIQSVVGVNRYRPDRADEIPMLKVDNTAVREQQLA
                     KLARLKAERDPATTAGALEALTAGARGNGNLLELAVNAARAKATVGEISDALEKVFNR
                     HQAHANAVSGVYLRESGVTDSARRAQEMAAAFAQADGRKPRILVAKMGQDGHDRGQKV
                     IASGFADLGFDVEIGDLFQTPAETAAQAVADGVHAVGASSLAAGHLTLVPELKSELRK
                     LGRPDIMVVVGGVIPPEDFAALKDMGVAAIFTPGTTVPDAAISVIERLNELLGYAQEQ
                     AAE"
     gene            1258..1884
                     /locus_tag="VHN39_01785"
     CDS             1258..1884
                     /locus_tag="VHN39_01785"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX2815096.1"
                     /translation="MSTRDRGRPPHPDVLTPAEWTVAESVRHGLTNPRIAKRLGVSLD
                     AVKYHVANALQKLGFESRAELRRWNGVRRDSHLFSKETDHMPDMTLGPVAQIARTVKD
                     IAAARRWYGEVLGLPHLYSFGNLAFYDCGGVRLYLSEGEPNACESILYFRVEDIRAAH
                     AALESRGVVFMNAPHMVHRHADGVEEWMAEFRDEEGRPLAIMTQVAGG"
BASE COUNT          351 a          739 c          651 g          272 t
ORIGIN      
        1 ggagcctcgc ggctcacgac gtcttcaaca atgtcgcgcg caccaccgtc gaggccatgg
       61 ccgcggtcgg tggccagacc cagagcctgc acacgaactc tctcgacgaa gcccttgctt
      121 tgccgacgga tttctccgcg cggatcagcc gcaacacgca gctctttcta caggcggaga
      181 gtggacagac ccgggtcatc gatccctggg gcggctccta ttacatcgag cgcctgaccg
      241 ccgacctggc ggcccgggcg ctcacccaca tcgccgaggt cgaagcgctg ggcggcatgg
      301 ccaaggccat cgagaacggc ctgcccaagc gccggatcga ggaggcttcg gcccgcaccc
      361 aggcgcgcat cgacgccggc atccagagcg tggtcggcgt caaccgctac cgccccgacc
      421 gcgccgacga gatccccatg ctgaaggtgg acaacaccgc cgtgcgcgaa cagcagctgg
      481 ccaagctcgc ccgcctgaag gccgagcgcg accccgccac cacggccggc gctctggagg
      541 cgctgaccgc cggcgcgcgc gggaacggca acctgctgga actcgccgtc aacgccgccc
      601 gggccaaggc gaccgttggc gaaatatccg acgcgttgga gaaggtcttc aaccgccacc
      661 aggcccacgc caacgccgtc tccggcgtct atctgcgcga aagcggcgtc accgacagcg
      721 cgcgccgcgc ccaggaaatg gccgccgcct tcgcccaggc cgacgggcgc aaaccccgca
      781 tcctggtggc caagatgggc caggacggcc acgatcgcgg ccagaaggtc atcgcttccg
      841 gcttcgccga tctcggcttc gacgtagaga tcggcgacct cttccagacc ccggccgaga
      901 ccgccgccca ggccgtcgcc gacggcgtcc atgcggtggg cgcgagctcg ctcgccgccg
      961 gccacctgac cctggtcccg gagctcaagt ccgagctcag gaaactcggg cgaccggaca
     1021 tcatggtggt ggtcgggggc gtcatcccgc ccgaggactt cgccgcgctc aaggacatgg
     1081 gcgtcgccgc catcttcacc ccaggcacca ccgtccccga cgccgccatc tcggtgatcg
     1141 agcggctcaa cgagctgttg ggctacgccc aggaacaagc cgccgaatag gctagcgctt
     1201 caccgcgaca cccatcgggt agggaaaatc cgccccgggg cctgtaaacc ttcgctcatg
     1261 agcaccagag accgcggccg cccgcctcat ccggatgtcc tgacgccggc cgaatggacc
     1321 gtcgccgaat ccgtgcgtca cggcttgacc aatccccgga tcgccaagcg tctcggggtc
     1381 agcctggacg ccgtgaaata ccacgtggcc aacgcccttc agaagctggg tttcgaaagc
     1441 cgcgctgagc tgcgccgctg gaacggcgtg cgccgcgaca gccacctctt ctcgaaggag
     1501 accgaccaca tgccggacat gacgctgggg cctgtggccc agatcgcccg caccgtgaag
     1561 gacatcgccg cggcgcgccg atggtacggc gaagtgctgg gactgccgca cctctactcg
     1621 ttcggcaacc tcgccttcta cgattgcggc ggcgtgcggc tgtacctctc cgagggggag
     1681 cccaacgcct gcgagtcgat cctctacttt cgcgtcgagg acattcgtgc ggcgcacgcc
     1741 gcactggaat cgcgcggcgt ggtcttcatg aacgcgccgc acatggtcca tcggcacgcc
     1801 gacggcgtgg aggaatggat ggccgaattc cgggacgagg aaggccggcc gctggcgatc
     1861 atgactcagg tcgccggcgg ctaagcgcat cagcacggag aggagaagca catgaccctg
     1921 cgattcaacc tgggttgggg aaccgccgcc cgcgccgcag cggcgctgat cctggccgcc
     1981 atgccgcgcc cggcgccggc gcagaccggg gcg
//
LOCUS       DATAJL010000096         2046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27300,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000096 DATAJL010000000
VERSION     DATAJL010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27300"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2046
                     /locus_tag="VHN39_01790"
     CDS             <1..>2046
                     /locus_tag="VHN39_01790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="multiheme c-type cytochrome"
                     /protein_id="HEX2815097.1"
                     /translation="FRVFERGGRSINPTFPEIGLPDATGELQKLEEPGRPDIRQSNRG
                     PGTGLRVAIPVLNVHKTRLNDPFTWFMGTNDQPGDYRQSGCATCHVVYANDREPLHSL
                     TYAKFGRDGQTATVDPTISKAESGHPIEHAFTRAIPTSQCMSCHMHQPNMFLNSYLGY
                     TMWDYEADAPFMWPERQRYPTADEIRKVLDRNPEGAAPRGLWASLDFLRNVFDLNPKL
                     KDTQFADYHGHGWNFRAIFKRDRDGNLLDADGKVVANDDPQKFRKTGEPAFAEPGGQA
                     GKAVHMMDIHAEKGMQCADCHFSQDAHGSGLIQGEVANAVEIGCRDCHGTISAYPSLR
                     TSNVAASPEGTDLTLLRNPDGQPRFEWIEKDGRRVLMQRSIIDPKLEWQVHLVKDSVD
                     RASPDFNPKAARAKLMGKITKDGKPFQWGPGVDKANLAHKDGEMECYACHTSWTPSCG
                     GCHLPIEANWKTTSHKYEGEETRNYATYNPQVARDDMFQLGRHSTVKGNSIAPVRSSS
                     ALVLSSTNINRERIYVQQPPISASGYSSQAFAPHFAHTVRKSETKTCSDCHVSEANDN
                     NAIMSQLLLLGTNTVNFVGMNAWVGLGDGLEAVRVTEWNEPQAVFGSYLQKYAYPDFY
                     KLHVDQNHRELISWRRGKPFAKGLKGGENDAAEDIVNVVHRTGGAARCLQLRGEYMY"
BASE COUNT          408 a          721 c          626 g          291 t
ORIGIN      
        1 tcttccgggt gttcgagcgc ggcggccgca gtatcaatcc caccttcccg gaaatcggtc
       61 tgcctgacgc caccggcgaa ctgcagaagc tggaggagcc cggccggccc gacatccgcc
      121 agtcgaaccg cgggcctggc acgggcctgc gcgtggcgat cccggtgctc aatgtccaca
      181 agacgcgcct caacgacccc ttcacctggt tcatgggcac caacgaccag cccggcgact
      241 accggcagtc cggctgcgcc acctgccacg tggtctacgc caacgaccgc gagccgctgc
      301 acagcctgac ctatgcgaag ttcggccgcg acggccagac cgccaccgtc gacccgacga
      361 tcagcaaggc cgagagcggc cacccgatcg agcacgcctt cacccgcgcg atcccgacct
      421 cgcagtgcat gagctgccac atgcaccagc cgaacatgtt cctgaacagc taccttggct
      481 acaccatgtg ggactacgag gccgacgcgc ccttcatgtg gcccgagcgg cagcgctatc
      541 ccaccgccga tgagatccgc aaggttctgg accgcaatcc ggagggcgcc gcgccgcgcg
      601 gcctgtgggc cagcctcgat ttcctgcgca acgtcttcga tctcaatccg aaactgaagg
      661 atactcagtt cgcggactat cacggtcacg gctggaactt ccgggcgatc ttcaagcgcg
      721 accgcgacgg caacctgctg gacgccgacg gcaaggtggt ggccaacgac gacccgcaga
      781 aattccgcaa aaccggcgag cccgccttcg ccgagccggg cggacaggcg ggcaaggcgg
      841 tccacatgat ggacatccac gccgagaagg ggatgcagtg cgccgactgc cacttctcgc
      901 aggacgccca cggttcgggc ctgatccaag gcgaggtcgc caacgccgtg gagatcggct
      961 gccgagactg ccacggcacc atctcggcct atccgagcct gcgcacctcc aacgtcgccg
     1021 cgagccccga gggcaccgac ctgaccctgc tgcgcaatcc cgacggccag cccaggttcg
     1081 agtggatcga gaaggacggc cgccgcgtcc tgatgcaacg ctcgatcatc gatccgaagc
     1141 tcgaatggca ggtgcatctg gtgaaggact cggtcgaccg cgccagcccc gacttcaacc
     1201 ccaaggccgc gcgcgccaag ctgatgggca agatcaccaa ggacggcaaa ccgttccagt
     1261 ggggccccgg cgtcgacaag gccaacctcg cccacaagga cggcgagatg gagtgctacg
     1321 cctgccacac gtcgtggacg ccctcctgcg gcggctgcca cctgccgatc gaggccaact
     1381 ggaagaccac cagccacaag tacgagggtg aggagacacg gaactacgcg acctacaatc
     1441 cacaggtggc gcgcgacgac atgttccagc tcggtcgcca ctcgacggtg aagggcaatt
     1501 cgatcgcgcc ggtgcgctcg tcgtcagcac tcgtcctgtc ctcgaccaat atcaaccgtg
     1561 agcggatcta tgtgcagcag ccgccgatct cggcgagcgg ctattccagc caggccttcg
     1621 cgccgcactt cgcccacacg gtgcgcaagt ccgagaccaa gacctgcagc gactgccacg
     1681 tctcggaagc caacgacaac aacgccatca tgtcccagct gctgctgctg gggaccaaca
     1741 ccgtcaactt cgttggcatg aatgcctggg ttgggctggg cgacgggctc gaagcggtcc
     1801 gggtcaccga gtggaacgag ccgcaggcgg tgtttggctc ctacctgcag aagtacgcct
     1861 atccggactt ctacaaactg cacgtcgatc agaaccaccg cgagctgatc agctggcgcc
     1921 gcggcaagcc cttcgccaag gggctgaagg gcggtgaaaa cgatgccgcc gaggacatcg
     1981 tcaacgtggt ccacaggacc ggcggcgcgg cgcgctgcct gcagctgcgg ggcgaatata
     2041 tgtacg
//
LOCUS       DATAJL010000097         2721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14426,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000097 DATAJL010000000
VERSION     DATAJL010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14426"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..910)
                     /locus_tag="VHN39_01795"
     CDS             complement(<1..910)
                     /locus_tag="VHN39_01795"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HEX2815098.1"
                     /translation="MSGFLANMAFYIIPFIVVVGVVITVHEFGHFLAAKALGTKIDQF
                     SIGFGKPIAHWTDKSGVEWRLGWLPIGGFVRFAGDDNAASVPDQDDLEDMRRDLISRE
                     GEEALGGYYHFKPIWQRSVISAAGPFANFALSIVIFAGVLMALGEPISAARIAEVVPK
                     TPAAAAGFQKNDLIVEADGKPVTSFDKVRELIILRTGVPITFVVERGGQQVVLSATPV
                     RGPVADAVGHMHQLGTVGIRFADLPQDRKIIHYGPIAALGAGVGRTVDVIQTTVFYIG
                     RMVTGRESADQISGPLGMAQISGDLAK"
     gene            complement(950..2155)
                     /gene="dxr"
                     /locus_tag="VHN39_01800"
     CDS             complement(950..2155)
                     /gene="dxr"
                     /locus_tag="VHN39_01800"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEX2815099.1"
                     /translation="MGPLSLPRKVSVLGSTGSIGVSTLDLFEQAKVEVDIVALTAGRN
                     VERLAEQALKWRPQIAVIADEVALPRLRDLLAGSGVRTAAGSVAVAEAAAADAQWVMS
                     AIVGFAGLAPTLAAARAGAVVALANKESLICAGPTLLRTAKLAGGAVIPVDSEHSAIF
                     QVFSPSNAQHVSRLILTASGGPFLSWSREQMGRATPEQALAHPNWSMGAKISIDSATM
                     MNKGLEVIEAAYLFAMPPERIEVLIHPQSIVHSLVEYADGSTLAQLGPPDMRSPIACA
                     FAWPDRLPWPAKRLDLARSGPLSFDEPDLERFPALRIAKQALVAGGAAPAAMNGADEV
                     AVAAFLDGRIGFLDIAATVEETLTRMDRQNLLRPSDNDPVESARVTDATARRVAGEVV
                     SGLMAPVHA"
     gene            complement(2143..>2721)
                     /locus_tag="VHN39_01805"
     CDS             complement(2143..>2721)
                     /locus_tag="VHN39_01805"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEX2815100.1"
                     /translation="VSHYVLAWLVMGVGAMASALIARGVAERPADAAYGVIYIGPAAL
                     CLIWLRATNQGVWWTLMLFACTWGADIGAFAVGSIFKGPKLWPRFSPNKTWSGFVGGL
                     ATAMGAGTLMASLPYFQLSLLAAALIGLTVGLATMAGDLWESALKRRFGVKDSGDIIP
                     GHGGLLDRVDGLMFAVVVMAGARLANEIGWGH"
BASE COUNT          487 a          940 c          895 g          399 t
ORIGIN      
        1 gcttggcgag gtcgccggaa atctgcgcca tgcccaaggg gccggaaatc tgatcggcgc
       61 tctcgcgccc cgtcaccatg cggccgatat agaagacagt tgtctggatc acatcgacgg
      121 tgcggccgac accggcccca agcgcggcga tcgggccgta gtggatgatc ttgcgatcct
      181 gcggcaggtc ggcaaagcgg atgccgaccg tgcccaactg atgcatgtga cccactgcgt
      241 cggccaccgg gccgcggacc ggggtcgcac tgagcaccac ctgctggccg ccccgctcga
      301 caacgaaggt gatcggcacg ccggttcgca ggatgatcag ctccctgacc ttgtcgaacg
      361 acgtcaccgg cttgccgtca gcctcaacga tgagatcatt tttctggaaa cccgccgccg
      421 cggccggcgt cttcggcacg acctcggcga ttcgcgccgc cgagatcggc tcgcccagcg
      481 ccatcaggac gccggcgaag atgacgatgg acagagcgaa gttggcgaac ggtccggcgg
      541 cgctgatcac cgatcgctgc cagatcggct taaagtgata gtacccgccg agcgcctcct
      601 cgccttcccg cgagatcagg tcgcggcgca tgtcctcgag gtcgtcctgg tcaggcacgc
      661 tggcggcgtt gtcatcaccg gcgaagcgta cgaagccgcc gatcggcagc cagcccagcc
      721 gccactcgac cccggacttg tcggtccagt gggcgatcgg ctttccgaag ccgatcgaga
      781 attggtcaat cttggtgccc agggccttgg ccgccaggaa gtggccgaac tcgtggactg
      841 tgatgaccac gcccaccacc acgatgaacg ggatgatgta aaacgccata ttggccagaa
      901 aaccggacat tggccgtcta ttcctctgag ctcgtgatgc gcgactcact catgcgtgca
      961 cgggagccat aaggccgcta acgacctcgc ccgccacgcg gcgcgcagtc gcatcggtga
     1021 cccgggcgga ttccaccgga tcattgtcgc tcggccgaag caggttctga cgatccatcc
     1081 gggtcagggt ttcttccaca gttgcggcga tatcaaggaa cccgatgcgt ccgtccagga
     1141 aagccgccac ggcgacctcg tcggcgccgt tcatggccgc gggcgcagcg ccgccggcga
     1201 ccagcgcctg tttggcgatc cgcagggccg ggaaacgctc caggtcgggc tcatcgaagc
     1261 tcagggggcc ggagcgggcg aggtccagcc gcttggccgg ccagggcagc cggtcgggcc
     1321 aggcgaaggc gcacgcgata gggctgcgca tgtccggcgg cccgagttgg gcgagcgtcg
     1381 agccgtcagc gtactccacc aggctgtgga cgatcgactg cgggtggatc agcacctcga
     1441 tgcgctcggg cggcatggcg aagaggtagg ccgcctcgat cacctcaagg cccttgttca
     1501 tcatcgtcgc ggagtcgatg gagatcttgg cgcccatgct ccaattggga tgggccagcg
     1561 cctgctccgg cgtggcgcgg cccatctgct cgcgggacca actgaggaag ggcccccccg
     1621 acgcggtcag gatcaggcgg gaaacatgct gagcgttgga aggcgagaac acctggaaga
     1681 tcgccgaatg ctcggaatcc accggaatca ccgccccgcc cgccagtttc gcggtcctca
     1741 gcagggtggg accggcgcag atcaggcttt ccttgttggc cagcgccacg accgccccgg
     1801 cccgcgccgc cgccagggtg ggcgccaggc cggcaaagcc gacgatggct gacatcaccc
     1861 actgggcgtc ggccgctgcg gcctcggcga cggcgacgga acccgcggcc gtgcggacgc
     1921 ccgagcccgc cagcagatcg cgcagccggg gaagcgccac ctcgtcagcg atgaccgcaa
     1981 tctgcgggcg ccatttcagc gcctgctcgg ccagtcgctc cacattgcgg ccggcggtga
     2041 gcgcgacgat gtcgacctcg accttggcct gctcgaacag atcaagggtc gagactccga
     2101 tcgagccggt cgaacccagg acgctgactt tacgcggcag gctcaatggc cccatccgat
     2161 ctcattggcc aggcgtgcgc cggccatcac gaccacggcg aacatcaggc cgtcgacccg
     2221 gtccaggagg ccgccgtggc ccgggatgat atcgcccgaa tccttaactc cgaagcgcct
     2281 cttgagcgca gactcccaaa ggtcccccgc catggtcgcc agaccgaccg tcaagccgat
     2341 gagggccgcg gccaggaggc tgagctggaa atagggaagc gaggccatca gcgttcccgc
     2401 ccccatggcc gtcgccaggc cgccgacgaa gccggaccag gtcttgttcg gcgaaaaccg
     2461 cggccagagc ttggggccct taaagatgct gcccacggcg aaggccccta tgtccgcgcc
     2521 ccatgtgcag gcaaatagca tcagcgtcca ccagaccccc tggtttgtcg cccgcagcca
     2581 gatgaggcac agcgccgccg gaccgatgta gatgaccccg taggccgcgt ccgccggccg
     2641 ctcggccacc ccgcgggcga tcagggcgga ggccatggcg ccgaccccca tcaccagcca
     2701 ggccaggacg tagtgcgaaa c
//
LOCUS       DATAJL010000098         4860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52889,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000098 DATAJL010000000
VERSION     DATAJL010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4860
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52889"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..658
                     /gene="nth"
                     /locus_tag="VHN39_01810"
     CDS             <1..658
                     /gene="nth"
                     /locus_tag="VHN39_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003906 - DNA-(apurinic or apyrimidinic
                     site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEX2815101.1"
                     /translation="AKRLSPAEQARIAEIFGRFEEQESDPRTELDYGSPFELVTAVAL
                     SAQATDVSVNKATDKLFKVADTPAKMLALGEAGLKPFISSIGLFNTKARNVIAMSRIL
                     VEQYGGEVPLTREALQALPGVGRKTASVVLNELRIEPAIAVDTHVFRVSHRLGLASGK
                     TPDQVEAELMAIVPAPLQTRAHHWLILHGRYVCVARKPKCEECVVADLCPSRHLFVGR
                     "
     gene            complement(683..1048)
                     /locus_tag="VHN39_01815"
     CDS             complement(683..1048)
                     /locus_tag="VHN39_01815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX2815102.1"
                     /translation="MRVMFIITSAAAAAPTPELLEAMHRLATREIAAGRMLDDGGLAP
                     LDMGTRITSARGKVAVLDGPFAESKEVIGGYAIFEVKDRDEGLALAVEFMQLHADHMP
                     GWEGACEMRAVAGSQTHGQ"
     gene            1240..2229
                     /locus_tag="VHN39_01820"
     CDS             1240..2229
                     /locus_tag="VHN39_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine kinase"
                     /protein_id="HEX2815103.1"
                     /translation="MPDLYDVAAIGNAIVDVIAPADDAFLAANSLDKGAMMLVDQTQS
                     QALYAKMAAGVETSGGSAGNTIAGVASFGGKAAYLGKVADDQLGEVFAHDMRAVSKWA
                     PTAPLVGGKATAVSMINVTPDGQRTMCTFLGASVEFTDADVDKDVIEGAKIVYLEGYL
                     FDAEPARRAFAKAAALAHGSGRMIALTLSDGFVVERHRAGLMGFIEGQVDLLFANETE
                     LKALFQTDHFDQALHALRPHVKIAAVTRGEKGSVVIDHGERLTVDAVAVDKVVDTTGA
                     GDQYAAGFMFGLSRGRSLQRCGQLASLAAAEVISHYGPRPQVSLKDLAAAKGY"
     gene            2233..2823
                     /gene="hisB"
                     /locus_tag="VHN39_01825"
     CDS             2233..2823
                     /gene="hisB"
                     /locus_tag="VHN39_01825"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEX2815104.1"
                     /translation="MSRTAEVVRNTKETQIRIVLDLDGSGESKVSTGIGFFDHMLESF
                     IRHGGFDATIETKGDLHIDMHHTVEDTGIVLGQAFAQALDGFKGVRRFGHAYIPMDET
                     LTRAAIDLSNRPYLIWNVSYKTPKVGDMDTELFKEFHHAFAMNCGACVHLETLYGVNS
                     HHIAESGFKALARALRHAVELDPKTHGHAPSTKGVL"
     gene            2836..3471
                     /gene="hisH"
                     /locus_tag="VHN39_01830"
     CDS             2836..3471
                     /gene="hisH"
                     /locus_tag="VHN39_01830"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEX2815105.1"
                     /translation="MQSVALINYGSGNLRSAEKALIRAADGKSEIVVTDDPDVVAAAD
                     RIVLPGVGAFASCMAALEARSGVIEAMTEAVHGKGAPFLGICVGMQLLASRGLEFGET
                     PGLDWIGGSVRRLQSPHPAIKIPHMGWNSLSGVTDQPVFSGLKDGLTVYFTHSFAFFP
                     KDEADVAAYVEHGERFPAAVARGNVAGMQFHPEKSQASGLGLLARFLEWQP"
     gene            3468..4190
                     /gene="hisA"
                     /locus_tag="VHN39_01835"
     CDS             3468..4190
                     /gene="hisA"
                     /locus_tag="VHN39_01835"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEX2815106.1"
                     /translation="MILYPAIDLQDGNCVRVVHGDLSTATVFNTSPAAQARAWVEGGF
                     HWIHVVDLNGAVSGKAVNHAAVEEILNAVSVPVQLGGGIRTLADIEGWIEAGVSRVIL
                     GTVAVRDPNIVIEAAKAWPEQIAVSVDVRKGRVAVQGWTEDSDLDAISVAKRFEDVGV
                     SALIITDIDRDGTTMGFNVEAFGAIADAVAIPVIAAGGLANIDDIVRLKARKGTQIAG
                     AVLGRALYNGDIVPAAALKAAA"
     gene            4190..>4860
                     /gene="hisF"
                     /locus_tag="VHN39_01840"
     CDS             4190..>4860
                     /gene="hisF"
                     /locus_tag="VHN39_01840"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEX2815107.1"
                     /translation="MLRVRVIPCLDVKDGRVVKGVQFVSLRDAGDPVEQARAYDAAGA
                     DELMFLDITASHENRGTILDVVARTADVCFMPLSVGGGIRTVEDARRLLLAGADKISI
                     NTAAVENRDLIAACADAFGSQATVVAIDAKRVGDAWRVFTYGGRTDTGLDVVDYAAEA
                     VSRGAGEILLTSMDRDGAKIGYDLDLLRAVTSAVSVPVIASGGAGNAQHIVEAVTEGH
                     ADAVHG"
BASE COUNT          796 a         1683 c         1615 g          766 t
ORIGIN      
        1 cgccaagcgc ctcagccccg ccgaacaggc ccggatcgcc gagatcttcg gccggttcga
       61 ggaacaggag agcgaccccc gcaccgagct ggactatggg agccccttcg aactggtcac
      121 cgccgtggcg ctctcggccc aggcgacgga tgtctcggtg aacaaggcca ccgacaagct
      181 cttcaaggtg gcggacacgc cggcgaagat gctggcgctc ggcgaggcgg gcctgaagcc
      241 cttcatctcc tcgatcggcc tcttcaacac caaggccagg aacgtcatcg ccatgagccg
      301 catcctggtg gagcagtatg gcggcgaggt cccactgacc cgcgaggcct tgcaggccct
      361 gcccggtgtg ggccggaaga ccgcctcggt ggtgctgaac gagctgcgca tcgagccggc
      421 gatcgccgtc gacacccacg tcttccgggt ttcccaccgc ctgggcctgg cgagcggcaa
      481 gacgccggac caggtggagg cggaactcat ggccatcgtg cccgcgcccc tgcagacccg
      541 cgcccaccac tggctgatcc tgcatggccg ctacgtctgc gtggcgcgaa agccgaagtg
      601 cgaagagtgt gtggtggccg acctctgtcc cagccggcat ctgttcgtgg ggcgctgaag
      661 accgccagcg ccccaatccg ccctattggc cgtgggtctg cgacccggcc acagcgcgca
      721 tctcgcaggc gccttcccag cccggcatgt gatcggcgtg gagctgcatg aactcgacgg
      781 ccagagccaa gccttcgtcg cggtccttca cctcgaaaat ggcatagccg ccgatcactt
      841 ccttggactc ggcgaacggc ccgtcgagca ccgccacctt gccgcgggcg ctggttatcc
      901 gagtacccat atccagcggg gccagcccgc cgtcgtcaag catccggccc gcggcgatct
      961 cgcgggtggc cagcctgtgc atggcctcca gcagctcggg cgtgggtgcg gcggcggcgg
     1021 ccgaggtgat gatgaacatg acgcgcatct ggcgatatct ccttgggggc gatccggggc
     1081 gacctcgccg cggtgtttcg ctgaccagga tgacgaaccg cccggccgat ggcccgacat
     1141 tcgggttttc acaaaatctc agcgcctatc gcccacgttg ccgcgaacgc cgatcttctg
     1201 taagccccgc cctcgcctcc tccgcctgaa agccctgcaa tgccagacct ctacgacgtc
     1261 gccgcgatcg gcaacgccat cgtcgacgtg atcgccccgg cggacgacgc cttcctcgcg
     1321 gccaacagcc tcgacaaggg cgcgatgatg ctggtcgacc agacccaatc gcaggcgctc
     1381 tacgccaaga tggcggcggg tgtggagacc tcgggcggct cggccggcaa caccatcgcc
     1441 ggcgtcgcca gcttcggtgg caaggcggcc tatctgggca aggtggccga cgaccagctg
     1501 ggcgaggtct tcgcccacga catgcgcgcg gtgtcgaagt gggcgcccac cgcgcccctg
     1561 gtgggcggca aggccaccgc ggtctcgatg atcaacgtca cgcccgacgg ccagcgcacc
     1621 atgtgcacct ttctgggcgc ctcggtggag ttcaccgacg ccgacgtgga caaggacgtc
     1681 atcgaaggcg cgaagatcgt ctatctggaa ggctatctgt tcgacgccga gccggcccgg
     1741 cgcgccttcg ccaaggccgc ggcgctcgcg cacggctcgg ggcggatgat cgcgctcacg
     1801 ctctccgatg gcttcgtggt cgagcgccac cgcgccggcc tgatgggctt catcgagggc
     1861 caggtggacc tgctgttcgc caacgagacc gagctgaaag ccctgttcca gaccgaccat
     1921 ttcgaccagg ccctgcatgc gctgcgcccg cacgtgaaga tagccgccgt cacccgcggc
     1981 gagaaaggtt cggtggtcat tgaccacggc gagcggctga cggtcgacgc cgtcgccgtg
     2041 gataaagtcg tggacacaac aggcgcgggc gaccaatacg cagccggatt catgttcggc
     2101 ctgtcgcgag gccgctcgct gcaacgctgc ggccagctgg cttcgctcgc ggcggccgag
     2161 gtgatctcgc actacgggcc gcgcccgcag gtctcgctca aggacctggc cgcggccaag
     2221 gggtactaga cgatgagccg cacggcggaa gttgtccgca acaccaagga gacccagatc
     2281 cggatcgtgc tcgatctgga cggctccggc gaatccaagg tctccaccgg catcggcttc
     2341 ttcgaccaca tgctggagag cttcatccgg cacggcgggt tcgacgccac catcgagacc
     2401 aagggcgacc tgcacatcga catgcaccac acggtggagg acaccgggat cgtgctcggc
     2461 caggcgttcg cgcaggccct cgacggcttc aagggcgtgc gccggttcgg ccacgcctat
     2521 atccccatgg acgagaccct gacgcgggcc gccatcgacc tctccaaccg gccgtacctg
     2581 atctggaacg tgtcctataa gacccccaag gtgggtgata tggacaccga gctcttcaag
     2641 gagttccacc acgccttcgc catgaactgc ggcgcctgcg tgcacctgga gaccctatac
     2701 ggggtgaact cccaccacat cgccgagagc ggcttcaagg ccctggcgcg cgcgctgcgc
     2761 cacgccgtcg agctcgaccc caagacccac ggccacgccc cctccaccaa gggcgtgctc
     2821 taaggattcc cctccatgca gagcgtcgcc ctgatcaatt atgggtcggg caaccttcgc
     2881 tcggccgaaa aggccctcat ccgcgccgcg gatgggaaga gcgagatcgt ggtcaccgat
     2941 gacccggacg tcgtcgccgc ggccgaccgc atcgtgctgc cgggcgtcgg cgcgtttgcg
     3001 tcctgcatgg ccgcgctcga agcccggtcg ggggtcatcg aggccatgac cgaggccgtc
     3061 cacggcaagg gcgcgccatt tctgggtatc tgcgtcggca tgcagctgct cgcctcgcgg
     3121 ggcctggagt tcggcgaaac gcccggcctc gactggatcg gcgggagcgt gcggcggctg
     3181 caatcgcctc acccagccat caagatcccg cacatgggct ggaacagcct gagcggcgtc
     3241 acggaccaac cggtcttttc cggcctcaag gatgggctga ctgtttattt cacccactcc
     3301 ttcgcctttt tccccaagga cgaagccgac gtggcggcct atgtggagca cggcgagcgg
     3361 ttccccgcag ccgtggcgcg cggcaatgtg gccggcatgc agttccatcc ggaaaagtct
     3421 caagcctcgg gcttaggcct tcttgcccgc ttcctggagt ggcagccttg atcctctacc
     3481 cggccatcga cctgcaggac ggtaactgcg tgcgcgtggt gcacggcgac ctgtcgaccg
     3541 cgaccgtatt caacacctcg cccgccgctc aggcccgcgc ctgggtagaa ggcggtttcc
     3601 actggatcca cgtggtcgac ctgaatggcg cagtgtcggg caaggcggtg aaccatgcgg
     3661 cggtcgagga gattctgaac gccgtttccg tgccggtgca gttgggcggc ggtatccgca
     3721 cgctcgccga catcgaggga tggattgaag ccggtgtctc ccgcgtgatc ctgggcacgg
     3781 tcgcggtgcg cgacccgaat atcgtcattg aagccgccaa ggcctggccc gagcagatcg
     3841 cggtcagcgt cgacgtgcgc aagggcaggg tggcggtgca gggctggacc gaggacagcg
     3901 acctcgacgc gatcagcgtg gcgaaacgct tcgaggacgt gggcgtctcg gccctgatca
     3961 tcaccgacat cgaccgcgac ggcacgacca tgggattcaa cgtcgaggcc ttcggggcca
     4021 tcgccgacgc ggtagcgatc ccggtgatcg cggcgggggg cttggccaat atcgacgaca
     4081 ttgtgcggct gaaggctcgc aaggggacgc agatcgccgg cgccgtgctc ggccgggcgc
     4141 tctacaacgg cgacatcgtc cccgccgccg ccctgaaggc tgccgcctga tgctgcgggt
     4201 gcgcgtcatt ccttgcctgg acgtcaagga cggccgggtg gtgaagggcg ttcagttcgt
     4261 cagcctgcgc gacgccggcg atccggtgga gcaggcccgc gcctatgacg ccgccggcgc
     4321 cgacgagctg atgttcctgg acatcaccgc gagccacgag aaccgcggca cgatcctcga
     4381 tgtcgtggcc cgcaccgccg acgtctgttt catgccgctc tcggtgggcg gcggcatccg
     4441 cacggtcgag gacgcgcgcc gcctgctgct ggccggcgcc gacaagatct cgatcaacac
     4501 cgccgccgtg gagaaccgcg acctgatcgc cgcctgcgcc gacgccttcg gcagccaggc
     4561 cacggtggtg gccatcgacg ccaagcgcgt cggagatgcg tggcgggtct ttacctacgg
     4621 cgggcgaacc gacaccggtc tggatgtggt cgactatgcc gccgaggccg tcagccgtgg
     4681 ggcgggcgag atcctgctca cctccatgga ccgcgacggc gccaagatcg gctacgacct
     4741 ggacctgctg cgggccgtta cctcggcggt ttcggtgccg gtgatcgcct cgggcggcgc
     4801 gggcaatgcg cagcacatcg tcgaagccgt cactgagggc cacgccgacg cggtccatgg
//
LOCUS       DATAJL010000099         2408 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78234,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000099 DATAJL010000000
VERSION     DATAJL010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78234"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1013)
                     /locus_tag="VHN39_01845"
     CDS             complement(<1..1013)
                     /locus_tag="VHN39_01845"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2815108.1"
                     /translation="MYRLMTVIAVLAGFAAIETRAAAAPLTAADKAHIAAIETGLVPP
                     IAIRGRPNSGQALAKRMAQAHVPGVSIAYFDHGRVVWAKGYGLADVASGRPVTPETLF
                     QAGSISKPLTATAALRLVEAGRLDLDQDVNARLQAWKVPENAFTAQQKVTLRRLLSHG
                     AGLTVHGYNGYRRDEPVPTTVQVLNGQAPANSAPVVVTAIPGSAWAYSGGGYVATQLL
                     LSETTGRSFPEVMRGEVLKPAGMAQSTYEQPLPERLRVRAATGYRRNGEPVAGNWYVY
                     PEMAAAGLWTTPSDLARWAIEIQKDDAGRSRRLLSPAMARQMLSHQIGPWGLGVQLTD
                     QNGT"
     gene            1177..2010
                     /locus_tag="VHN39_01850"
     CDS             1177..2010
                     /locus_tag="VHN39_01850"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEX2815109.1"
                     /translation="MAGNLGKIHDVAEELARSAGAIANLTVLGAERRVPAHVHTNAYL
                     SLHVLGGYRENGEDGEAVIDGPAAMFFPAGSAHEMAIGPQGLATVIIEFDSDRLRSTV
                     GGGAEPGRARRWIGGEIGRRASRLARAWLSGTPDARRFAMTETFLTSALGAAPHRQAP
                     AWLEDVEALVDAEGGVSGLAGLARQCGVSRPWLVRAYRHWRGEGIGEALRRRRVAAAA
                     ILLEGDDTPLAEVAAQAGFCDQSHMNRAFRRLVGRTPAAVRAARLGLAGPAANAPSAC
                     P"
     gene            complement(1985..>2408)
                     /locus_tag="VHN39_01855"
     CDS             complement(1985..>2408)
                     /locus_tag="VHN39_01855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2815110.1"
                     /translation="TPGLDGGPALKDQALREKLADWYVQAEGLKHTRNRTMTALSRGQ
                     TPGPESSIGKIVSALQMQDLGNSAVEMLDQFGIINDPELAALGGAFHTSVMFAPGLRI
                     AGGTDEILKNIIAERVLGLPGDIRVDKDVAFKDMPTGR"
BASE COUNT          348 a          831 c          855 g          374 t
ORIGIN      
        1 gttccgttct gatcggtcaa ctggacccca aggccccagg ggccgatctg gtggctcagc
       61 atctggcgcg ccatggccgg cgacagcagg cggcgggacc ggcccgcgtc gtccttctgg
      121 atttcgatcg cccagcgggc aaggtcggag ggcgtcgtcc agagcccggc cgccgccatc
      181 tcggggtaga cgtaccagtt cccggccacc ggctcgccgt tgcggcggta gccggtcgcg
      241 gcgcggacgc gcaaccgctc gggcagaggt tgctcgtagg tcgactgcgc catgccggcg
      301 ggcttcagca cctcgccgcg catcacctcc gggaaggatc gtccggtggt ttcggagagc
      361 agcagctggg tcgccacata accgccgccg gaataggccc aggccgaccc cgggatcgcg
      421 gtgacgacga ccggggcgct gttggccggc gcctggccgt tcaggacctg caccgtggtc
      481 gggaccggct cgtcccggcg atagccgttg tagccatgga cggtcaggcc ggcgccgtgg
      541 ctcagcagcc gacgaagcgt caccttctgc tgggcggtga aggcgttctc tggaaccttc
      601 caggcctgca ggcgggcgtt gacatcctgg tcaagatcga gccggccggc ctcgaccagc
      661 cgcagcgcgg cagtggctgt cagcggcttg ctgatcgaac cggcctggaa caaggtctca
      721 ggtgtgaccg ggcggccgct ggcgacgtcg gccaggccat agcccttggc ccagacgacg
      781 cggccatgat cgaaataggc gatgctgacg cccgggacgt gggcctgagc catccgcttc
      841 gccaaggcct ggccggagtt gggccggccc ctgatggcga tcggcgggac caggccagtc
      901 tcgatcgccg cgatatgcgc cttgtcggcg gcggtgagcg gcgcggccgc ggcccgcgtt
      961 tcgatcgcgg cgaagcccgc cagcacggcg atcacggtca tcagtcggta catttggcca
     1021 agtcctcgcg ctctcgcgac tgatcatgac gtcgcacgga tgggcgagcc ctgtattgga
     1081 cgataaggca gtggtccggc ggccgtcagc gcgggccaag tccatgatta cagaaaagaa
     1141 acttggctgg tcggaccgct gccctaagct ccgaccatgg ccggaaatct cggcaagatt
     1201 catgacgtcg ccgaggagct cgcacgcagc gcgggcgcga tcgcgaacct gacggtgctg
     1261 ggcgcggaac gccgagttcc ggcccatgtc cacaccaacg cctacctgtc gctgcacgtg
     1321 ctcggcggct accgcgaaaa cggcgaggac ggcgaggcgg tcatcgatgg ccccgcggcg
     1381 atgttctttc cggcgggttc cgcacacgag atggcgatcg gcccccaagg tctcgccacg
     1441 gtgatcatcg agttcgattc cgacaggctg cggtccaccg tcggcggcgg cgcggaacca
     1501 ggacgcgccc gtcgctggat cggcggcgag atcggtcgcc gcgccagccg gctggcgcgc
     1561 gcctggttgt ccggaacacc cgacgcgcgg cggttcgcca tgaccgagac gtttctcacg
     1621 tcagccctcg gcgcggcgcc gcaccgccag gcgcccgcgt ggcttgagga tgtggaggcc
     1681 ctggtcgatg cggagggcgg cgtctcaggt ctggccggcc tggcccggca gtgcggcgtc
     1741 agccgaccct ggctcgtgcg cgcctatcgg cattggcgcg gcgagggtat cggcgaagca
     1801 ctgcgtcggc ggcgtgtggc ggcggccgcg atcctgctcg aaggcgacga cacgcccctg
     1861 gccgaggtcg ccgcccaggc cgggttctgc gatcagagcc acatgaaccg cgccttcagg
     1921 cgcctggttg gccgaacccc cgccgcggtc agggccgcaa ggctcggcct ggcgggcccc
     1981 gcggctaacg ccccgtcggc atgtccttga aggccacgtc cttgtcgacg cgaatgtcgc
     2041 ccggaaggcc cagcactcgc tcggcgatga tgttcttcag gatctcgtcg gtgccgccgg
     2101 cgatccgcag gcccggcgcg aacatcaccg aggtgtggaa ggccccgccc agcgccgcca
     2161 gctccggatc gttgatgatc ccgaactgat caagcatctc cacggccgag ttgcccaggt
     2221 cctgcatctg cagggccgag acgatcttgc cgatggagct ttccggcccc ggggtctggc
     2281 cccgcgagag cgccgtcatc gtccggttgc gggtgtgctt cagcccctcg gcctggacat
     2341 accagtcggc cagcttttcg cgcagcgcct ggtccttcaa ggccggtccg ccgtcgaggc
     2401 ccggcgtc
//
LOCUS       DATAJL010000100         1873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14430,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000100 DATAJL010000000
VERSION     DATAJL010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14430"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..472)
                     /locus_tag="VHN39_01860"
     CDS             complement(<1..472)
                     /locus_tag="VHN39_01860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815111.1"
                     /translation="MATVVALAGVAVSGAAQAASSRVRFHIEPKRTSEALLDLAQQAN
                     VTLIGAAACEGYAQTRIAAAMTVEQALDLLLTGAPCAWKMIAPGAVEISALPRAASAR
                     PAPVVVSELLVTATKRVRDPRQLAVSMTAVSGKDLQATGASDAAEGAAQLDMLST"
     gene            complement(530..1561)
                     /locus_tag="VHN39_01865"
     CDS             complement(530..1561)
                     /locus_tag="VHN39_01865"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEX2815112.1"
                     /translation="MTTPMESPVTQGGLAMVQAAAWVVRLGGDATGEDGVEFDVWLDA
                     APGNRAAYRQALALWCEFDARAGDVLAELSASARQTPARPPAARRTVPRAAQAGGRRR
                     TALRWLTPIGGFALAAGLALAVLPPTVLRPAATTTYSTGTGQHQRVALADGSVIDLDA
                     ETRLRVTFAGSERRVALAEGQAIFDVVHDPRRPFIVQAGGRTVRDVGTQFDVRQRAGE
                     FTVTVARGRVEVGPDGSGQPILLGPGQRLEVDRASAGQLSVVDPAETFSWRAGRLVYR
                     AQPLADVVADLNRQFVEQTTISDPELGKLPITGVIVLDNPRAVMTRLSLMLPIRAVSS
                     DKGLKLLRK"
     gene            complement(1658..>1873)
                     /locus_tag="VHN39_01870"
     CDS             complement(1658..>1873)
                     /locus_tag="VHN39_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2815113.1"
                     /translation="AADEALVARERVRLLAEAVTELPPQMGRAFRLHKLEGKSQAETA
                     EAMGVSRKMIEQHISAAIRRLAERLQT"
BASE COUNT          277 a          668 c          671 g          257 t
ORIGIN      
        1 tggtcgacag catgtcgagc tgggcggcgc cttcggccgc gtcgctggcg ccggtggcct
       61 gcaggtcctt gccgctgacc gcggtcatcg acaccgccag ctggcgaggg tcgcgcaccc
      121 gcttggtggc ggtgaccagg agctcagaga cgacgaccgg cgccggcctg gcggacgcgg
      181 ccctgggcag ggccgagatc tccacggcgc cgggggcgat catcttccag gcgcagggcg
      241 cgccggtcag gagcaggtcc agcgcctgct cgacggtcat ggcggcagcg atgcgggtct
      301 gggcgtagcc ctcgcaagcg gcagccccga tcagggtgac attggcctgc tgggcgagat
      361 ccagcagggc ctcggatgtc cgcttgggct ctatatggaa gcgtacacgc gacgaggcgg
      421 cctgcgccgc tccggacacg gcgacgccgg ccaaggcgac cacggtcgcc atgccggccg
      481 caaatgcccg acgccccacc ctagacagct ccgcccccga atctgaccct tacttcctca
      541 ggagcttcag ccccttgtcg gaggataccg ccctgatcgg aagcatcaag gacagccgtg
      601 tcatgacggc gcgcgggttg tcgagcacaa tgaccccggt gatcggcagc tttccgagct
      661 ccgggtcgga gatggtagtc tgttcgacga actggcggtt caaatccgcc accacgtcgg
      721 ccaggggctg ggcgcggtaa acgagccgcc ctgcccgcca gctgaaggtc tcggccgggt
      781 ccacgacgct gagctggccg gcgctggcgc ggtcgacctc cagccgctgg ccggggccaa
      841 gcaggatggg ttggccggag ccgtcggggc caacctcgac gcggccgcgc gcgaccgtga
      901 cggtgaactc gccggcgcgc tggcgaacat cgaactgggt gccgacatcg cgcacggtgc
      961 gcccgcccgc ctgaacgatg aacggacggc gcgggtcatg gaccacgtcg aagatcgcct
     1021 ggccctcggc cagcgccacg cggcgttccg acccggcgaa cgtcacgcga agccgcgtct
     1081 cggcgtccag gtcgatcacg ctgccgtcgg ccagcgccac ccgctgatgc tggcccgtgc
     1141 cggtggagta ggtcgtggtg gcggcgggtc tgagcaccgt gggcggcagc accgccagcg
     1201 ccaggccggc ggccagggca aagccgccga tgggagtcag ccagcgcagc gccgtacggc
     1261 ggcggcctcc agcctgggcg gcgcgtggga ctgtgcgacg ggctgcgggg ggacgcgccg
     1321 gcgtctgacg cgcggaggcg ctcagctcag ccagcacgtc cccggcgcga gcgtcgaact
     1381 cacaccacag cgccagcgcc tggcgatagg cggcgcgatt ccccggcgcc gcatcaagcc
     1441 agacgtcgaa ctcgacgcca tcttcgccgg tggcgtcccc acccagacgc acgacccagg
     1501 cggcggcttg caccatcgcc aggccgcctt gcgtcacagg gctctccatt ggggtcgtca
     1561 tcggctcact tgcccgatct gcgcaaagcg cgcggaacaa tcccaagacg gcgccgaggc
     1621 ctggcatccc tatgtggcgg ctgaaattgt gcggcggtca cgtctgcagc ctctcggcaa
     1681 ggcgccggat agcggctgag atgtgctgct cgatcatctt gcgcgagacc cccatggcct
     1741 cggcggtctc cgcctggctc ttgccctcca gcttgtgcag cctgaaggcg cggcccatct
     1801 gcggcggcag ctcagtcacc gcctcggcca gcaggcggac gcgctcgcgg gcgaccaggg
     1861 cctcgtcggc ggc
//
LOCUS       DATAJL010000101         2244 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52921,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000101 DATAJL010000000
VERSION     DATAJL010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52921"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1815)
                     /locus_tag="VHN39_01875"
     CDS             complement(<1..1815)
                     /locus_tag="VHN39_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815114.1"
                     /translation="MTISRIAMLLAGAATLAACAANTSAPSALASAAPVSATAPMRVS
                     NFLLVDQNLVAHELYRLGDAPAVVIVTQQNGDAAMRAQAPRLNKLAADYGQKGVEFMM
                     LNSSLKDSMEAIQAEATKAGYQVPVLMDGNQIIGESLGVTRSGEAIVLNPKTWQVVYH
                     GAVAGMPAALDAMLAGKPVTTSASASTGATIAFPARVQKAEFTYVKDVAPILEKRCVA
                     CHEEGGIGPFAMNSYAMVKGFAPMITEVIRTDRMPPYHADPHVGTFSDSKRMTPDEIK
                     TLVHWVEAGSPRGVGDDPLAKAHLVAADWPLGKPDLVLDIPKFKVAATGVVDYQRPFT
                     VNPETQGHWIRATSVKPGDRQAVHHVLSGWMAEAPSGKTSNEGMWRQSVGRYAVGSEA
                     DVYDGTIGTFLPAGGAIGFQMHYTPYGKEVVDNSQIGVYFAKEPPKYIMRQTVISDPG
                     IDIPANTARHMEMAYQEFPKDALLYAAFIHAHYRATASDLWIQYPDGKQKLLVTLPRY
                     DFNWQRAYTFAEPVKVPAGSRLIAHYWYDNSKRNPHNPDPNIEVTWGEQSFQEMLFTQ
                     VDFRWMDETAAAQVDSDGRFADTRILGFLDKNLDGKVEK"
     gene            2060..>2244
                     /locus_tag="VHN39_01880"
     CDS             2060..>2244
                     /locus_tag="VHN39_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815115.1"
                     /translation="MSSRTRSIAFACSALLALAAPPALAQTDPAAVAKGYHAPRDAWG
                     RPDLTGTWSPATITRLER"
BASE COUNT          318 a          697 c          831 g          398 t
ORIGIN      
        1 cttctcgacc ttgccgtcga ggttcttgtc gaggaagccc aggatgcggg tgtcggcgaa
       61 acggccgtcg gaatcgacct gggccgccgc ggtctcgtcc atccagcgga agtcgacctg
      121 ggtgaacagc atctcctgga aggactgctc gccccaggtg acctcgatgt tcgggtcggg
      181 gttgtgcgga ttgcgcttgg aattgtcgta ccagtagtgg gcgatcagcc gcgaaccggc
      241 cgggaccttg accggctcgg cgaaggtgta ggcccgctgc cagttgaagt cgtagcgcgg
      301 cagggtgacc aggagcttct gcttgccgtc cggatactgg atccacaggt cgctggccgt
      361 ggcccggtag tgggcgtgga tgaaggccgc gtagagcagg gcgtccttcg ggaactcctg
      421 gtaggccatt tccatgtggc gcgcggtgtt ggccgggatg tcgatgccgg gatcgctgat
      481 caccgtctga cgcatgatgt acttgggcgg ctccttggcg aagtagacgc cgatctggga
      541 gttatcgacg acctccttgc catagggcgt gtagtgcatc tggaagccta tagcgccgcc
      601 ggcgggcagg aaggtgccga tggtgccgtc atagacgtcg gcttcggagc ccacggcata
      661 gcggccgacg gactggcgcc acatgccctc gttggaggtc ttgcccgagg gcgcctcggc
      721 catccagccg ctcagcacgt ggtggacggc ctggcggtcg ccgggcttca ccgaggtggc
      781 gcggatccag tggccctggg tttccgggtt cacggtgaag gggcgctggt agtcgaccac
      841 gccggtggcg gcgaccttga acttggggat gtcgagaacg aggtcgggct tgcccagcgg
      901 ccagtcggcg gccacgaggt gagccttggc gagcgggtcg tcgccgacgc cgcgcgggct
      961 gccggcctcg acccagtgga ccagggtctt gatctcgtca ggggtcatcc gcttagagtc
     1021 ggagaacgtc cccacgtgcg gatcggcgtg atagggcggc atccggtcgg tgcggatcac
     1081 ctcggtgatc atcggggcga agcccttgac catggcgtag ctgttcatgg cgaaggggcc
     1141 gatgccgcct tcttcgtggc aggccacgca gcgcttttcg aggatcggcg ccacgtcctt
     1201 cacataggtg aactcagcct tctggacgcg ggccgggaag gcgatcgtcg cgcctgtgct
     1261 ggcggaagcc gaggtggtga ccggcttgcc ggccagcatg gcgtcgagcg cggcgggcat
     1321 gccggcgacc gcgccgtggt agacgacctg ccaggtcttg ggattgagga cgatggcctc
     1381 gccggagcgg gtgacgccca ggctctcacc gatgatctgg ttgccgtcca tcaggaccgg
     1441 gacctggtag ccggccttgg tcgcctcggc ctggatggcc tccatgctgt ccttgaggct
     1501 ggagttcagc atcatgaact cgacgccctt ctggccatag tcggcggcca gtttgttgag
     1561 ccggggcgcc tgggcgcgca tcgccgcgtc gccgttctgt tgggtgacga tcaccaccgc
     1621 cggcgcgtcg cccagccggt agagctcgtg ggccaccagg ttctggtcga ccagcaggaa
     1681 gtttgagacc cgcatcgggg ccgtggccga cacgggcgcg gccgaggcga gcgcgctcgg
     1741 cgcgctggtg ttggcggcgc aggcggcgag cgtggcggct ccggccagca acatggcgat
     1801 acggctgatg gtcatgtcgg tctcgttcct caagagttgg ccgcgcgcgg gcgcgcagcg
     1861 tttccatgta accgaatccg ccaaatctga acagtgttcg gaaagcggtt tcgcgggggt
     1921 gcggcgattg ggctacggtg acgttggggg aaggtccggg cggccctatt gccgaactgg
     1981 gcccgagcgc gccacatgcc gcgaggctga tcgcgccggt cacaaggcgc ggcggtccct
     2041 aagcccaggg agctccagga tgtcgtcgcg cacccgttcc atcgcgtttg cctgttccgc
     2101 gctgctggcg ctggccgccc cgccggcgct ggcccagacc gacccggccg cggtcgccaa
     2161 gggctatcac gcgccgcgcg acgcctgggg gcgcccggac ctcaccggca cctggtcgcc
     2221 ggccaccatc acccggctgg agcg
//
LOCUS       DATAJL010000102         3814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_116661,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000102 DATAJL010000000
VERSION     DATAJL010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3814
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116661"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..877
                     /locus_tag="VHN39_01885"
     CDS             <1..877
                     /locus_tag="VHN39_01885"
                     /inference="COORDINATES: protein motif:HMM:NF014794.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX2815116.1"
                     /translation="YPDKATILQVDNDPTHLGQRHPVALGLLGDIGPTLDALLPRLTP
                     RDKSHHYDQSVALHRKVITAHTTKAEEPGPNDSIPGKYAAGLINKKAAEDALIVADDG
                     TVGVWMLRHMPANGKRRTFASLLHGTMAGGMTSALGLQKAQPDRQVIALCGDGGFAML
                     LGDLLTTVQENLPIKIAVFDNAKLGFVEIEQKTEGMVNLYTDLKNPDFGEVAKAMGLW
                     GQMVDHASVLEAAVDRWLAEPGPALLHIKVEPLELVMPPFTEIEPAIGMALYATRAIM
                     QGKGSDVLDMIKQNL"
     gene            911..1288
                     /locus_tag="VHN39_01890"
     CDS             911..1288
                     /locus_tag="VHN39_01890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815117.1"
                     /translation="MARLIRPSDLRAYGRRLLLRAAAAGLAAVAGLFVAVAAGLALYG
                     LMRVWLPPLWAAVATFGLFAFGAASMAVILAWMGRAPPPPPATIWDWLLAGDPEGRPE
                     GGLRAWAFAALRELLRRPLRRRG"
     gene            1362..1514
                     /locus_tag="VHN39_01895"
     CDS             1362..1514
                     /locus_tag="VHN39_01895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815118.1"
                     /translation="MLAASYIGFLVERLIRGEALLGRVRAIYIDRVAVIFAAQMTEPS
                     EAAGRP"
     gene            complement(1546..2376)
                     /locus_tag="VHN39_01900"
     CDS             complement(1546..2376)
                     /locus_tag="VHN39_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815119.1"
                     /translation="MRSKTSAALTAATLLVAGVLSAAPARADDDGDAAPLAPSGRTDP
                     NNPTAPLVQVQIQDWYNTRLSGIDGQSNLVLIRPVLPFAAFGSIPSEIARPAIPIITT
                     PDGRTALGDISGLDLFFVVDKPNLRIGIGPTVVLPTATYRRAGQGLWQAGPAAAVVYT
                     GEKGLLLGLLVQNPISFAGPSDRGSASKLAVQPIIVKNLQDGWFLRFDPVVSVDWTHQ
                     GATTIPLNIGIGRVFKLGQQRINAYIQPEWTVQRPRDAPQTPRFTLRFAVHLLYPKTG
                     "
     gene            complement(2468..3421)
                     /locus_tag="VHN39_01905"
     CDS             complement(2468..3421)
                     /locus_tag="VHN39_01905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815120.1"
                     /translation="MARRIAMYFAWDREAETAAPLGVLDNRFPALHEVRRQFWPAFEA
                     LAEAPGGQGIEGFLQGFFLRNFARFGDQVATLTGRPLRQVQRRSAVGETLLDAALLDA
                     VDTLIVISFDSQRTGQAASVAEVDAVRAFLARPDTMLFVCPHHDIGDTDGLDADAARA
                     RLEAEFHHHGDAALPGQQRVGGFGRSLMAGLGAPIRNRFGLRPARTEQGEPVAFDRVA
                     EDRYGILAGVPHFNLHPHLPHYERVGAGTEALEVLARVPVQSDAPAHPEAPAGGKFDA
                     MLQARPEAALGRLLVCDVTLWTSAFGGLQGLQALWRNVIAA"
     gene            3628..>3814
                     /locus_tag="VHN39_01910"
     CDS             3628..>3814
                     /locus_tag="VHN39_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815121.1"
                     /translation="MGLSRVKSPAVEIVYRTRGHTRGAVTRLMSPGDLGQLLKPFVVL
                     DRFDSRDGPLGSFDWRPL"
BASE COUNT          561 a         1318 c         1346 g          589 t
ORIGIN      
        1 ctatccggac aaggccacca tcttgcaggt ggacaacgac cccacccacc tcgggcagcg
       61 ccatccggtg gccctcggcc tgctcggcga catcggtccg accctcgacg ccctgctgcc
      121 gcgtctcacg ccgcgggaca agtcgcatca ctacgaccag tcggtggccc tgcacaggaa
      181 ggtgatcacc gcgcacacga ccaaggcgga ggagcccggc ccgaacgact ccatccccgg
      241 caagtacgcc gccggcctaa tcaacaagaa ggcggcggag gacgccctga tcgtcgccga
      301 cgacggcacc gtaggggtct ggatgctccg gcacatgccc gccaacggca agcggcggac
      361 cttcgccagc ctgctgcacg ggaccatggc cggcggcatg acctcggcgc tcggcctgca
      421 gaaggctcag cccgaccgcc aggtgatcgc gctctgcgga gacgggggtt tcgccatgct
      481 gctcggcgac ctcttgacca cggtgcagga gaacctgccg atcaagatcg cggtcttcga
      541 caacgccaaa ctcggcttcg tggagatcga gcagaagacc gaggggatgg tgaatctcta
      601 caccgatctc aagaacccgg acttcggcga ggtggccaag gccatgggcc tctggggcca
      661 aatggtcgac catgcctcgg tcctggaagc ggcggtggac cgctggctgg cggagcccgg
      721 cccggctctg ctgcacatca aggtcgagcc gctcgagctg gtgatgccgc cgttcacgga
      781 aatcgagccg gcgatcggca tggccctcta tgcgacgcgc gcgatcatgc agggcaaggg
      841 cagcgacgtc ctcgatatga tcaagcagaa cctttagctg acctgaccgg cctccagcct
      901 ccgccgtcac atggcccgcc tgatccgccc ctccgacctg cgcgcctatg gccgccggct
      961 cctgttgcgc gccgccgccg ccggtctggc ggcggtcgcc ggtctgttcg tggccgtggc
     1021 ggctgggctt gcgctttacg gcctcatgcg ggtctggctc ccgccgctct gggcagcagt
     1081 ggcgaccttc gggctctttg cttttggcgc cgcgtccatg gcggtgatcc tggcctggat
     1141 gggccgggct ccgccgcctc cgccggcgac catctgggat tggctgctgg ccggcgatcc
     1201 ggaggggcgt cccgagggcg gcctgcgcgc ctgggccttc gccgccctgc gcgaactgct
     1261 ccgccgtccg ctgcgccgtc gcggctgacg tccatcaacc gcgtttcctc gagccgatcc
     1321 gacactggct cggcggcgag gacgccgacg cccgcgcccg ggtgctggcg gcgagctata
     1381 tcggcttcct ggtggagcgc ctgatccgcg gtgaagcgtt gctgggacgg gtgcgggcga
     1441 tctacatcga ccgggtggcc gtgatcttcg cggcgcagat gaccgaaccc agcgaagccg
     1501 caggtcggcc gtgaacacgg caaggccggt ctgaccggcg acgggtcagc ctgtcttcgg
     1561 atagagcaga tggaccgcga agcgcagggt gaagcgcggt gtttgcggcg catcgcgggg
     1621 ccgttgcacc gtccactccg gctgaatgta ggcgttgatc ctctgctggc cgagcttgaa
     1681 gacgcggccg atgccgatgt tgagcgggat ggtcgtcgcg ccctggtggg tccagtcgac
     1741 gctgaccacc gggtcgaagc gcagaaacca cccgtcctgc aggttcttca cgatgatcgg
     1801 ctggacggcg agcttgctgg cgcttccgcg gtcgcttggg cccgcgaagc tgatcgggtt
     1861 ctgcacgagc aagccgagca gcaggccctt ttcgccggtg tagacgacgg ccgcagccgg
     1921 ccccgcctgc cacaggcctt gtcccgcgcg gcggtaggtg gcggtgggca ggacgacggt
     1981 ggggccaatg ccgatccgca ggttcggctt gtcgacgacg aagaacaggt ccagcccgct
     2041 gatgtcgccg agcgccgtac ggccgtccgg cgtggttatg atcgggatgg cgggcctggc
     2101 gatctcggac gggattgagc cgaaggctgc gaacggcagc accgggcgga tcagcaccag
     2161 gttgctctgg ccgtcgatcc cgctgagccg ggtgttgtac cagtcctgga tctgcacctg
     2221 gaccaggggc gcggtgggat tgttggggtc ggtgcggccg ctgggcgcca gcggcgccgc
     2281 gtcgccatcg tcatcggcgc gggctggagc agcggacagg acgcccgcga ccaggagggt
     2341 tgcggcggtc agggccgctg aggttttgct tcgcatgtgg aggactcccc gatcacgtcg
     2401 gaagggtcgc gatccgcgca cccagcgtct tgtagcggcg tgcgaccgct tggccgcgag
     2461 tgacgcctca agccgcaatg acgttccgcc acaacgcctg caggccctgc aacccgccga
     2521 acgccgaggt ccacagtgtg acgtcgcaga cgagaagccg accgagcgcg gcttcggggc
     2581 gcgcctgcag catcgcgtcg aatttgccgc cggccggcgc ttccggatgc gccggagcgt
     2641 ccgactgcac tggcactcga gccaggacct ccagggcctc ggtccccgcg ccgacgcgct
     2701 catagtgcgg caggtgcgga tgcagattga agtgcgggac gccggccagg atcccgtagc
     2761 ggtcctcggc cacccggtcg aaggccacag gctcgccctg ctctgtgcgc gccgggcgca
     2821 ggccgaagcg gttgcggatc ggcgcgccca gtccggccat cagcgaccgg ccgaatccac
     2881 cgacccgctg ctggccgggc agggcggcgt cgccgtggtg gtggaattcc gcctccagac
     2941 gcgcccgagc ggcgtccgcg tcgagaccgt cggtgtcgcc gatgtcgtgg tgcgggcaga
     3001 cgaagagcat ggtgtcgggc cgggcgagga aggcgcggac cgcgtcgacc tccgccaccg
     3061 acgcggcctg gcccgtgcgc tgactgtcga aactgatgac gatcagggtg tccacggcgt
     3121 ccagcagggc ggcgtcgagc aaggtctcgc cgaccgctga gcggcgctgc acctggcgca
     3181 gcggccggcc ggtcagtgtc gccacctgat cgccgaagcg cgcgaagttc cgcaggaaga
     3241 acccttgcag gaacccttcg attccctggc ctccgggcgc ctcggccaag gcctcaaagg
     3301 ccggccagaa ctggcggcga acctcgtgca gcgccgggaa gcgattgtcg aggacgccga
     3361 gtggcgcggc ggtctcggcc tcacggtccc aggcgaagta catcgcgatc cgccgcgcca
     3421 ttccgtccat cctttcgttc cgccgcgccc gcctgtgggc gcctgtccgg tgaacctagg
     3481 gcgcacggac cgagcgggct tggcgatcct tgccctgcct gtgacgtgac ggcacgaacc
     3541 gccaagccgg gctcggcccg gccaagcctc gtctcctcga acaccgcact agtgagcggg
     3601 ctgcgcccgc catgctggag accgtccatg ggcctgagcc gcgtgaagtc gccggctgtc
     3661 gagatcgtct atcgcacccg cggccacacg cgcggggcgg tcacccggtt gatgagtccc
     3721 ggcgacctcg gccagctgct gaagcccttc gtcgtcctcg accggttcga cagccgggac
     3781 ggtccgctcg gatccttcga ttggcgcccg ctct
//
LOCUS       DATAJL010000103         1553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_52972,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000103 DATAJL010000000
VERSION     DATAJL010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52972"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VHN39_01915"
     CDS             <1..457
                     /locus_tag="VHN39_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815122.1"
                     /translation="KVSRARARETFDWSVVYRRYQDLWAEQDAIRRRAIADPPTQDWL
                     ALAPRNAVDHKGPFDRFASFPTHHVGPATVVALTATGTPEAYRKIAQHQLIERWHIAP
                     EVFDRVHDALQAGPATVEALMAKTGFTSVQTTEIVARLAKVDVVSLAVG"
     gene            539..898
                     /locus_tag="VHN39_01920"
     CDS             539..898
                     /locus_tag="VHN39_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2815123.1"
                     /translation="MIEAACHCGAVRLTAPSAPDTVTECNCSICRKLAARWAYYKPSD
                     VGMPRAGSTQPYVWGDRMLAFHRCKTCGVTTHWQSLDGAQERMAINARLVDGLDWPAI
                     RIRQFDGADTWKYLDEA"
     gene            921..>1553
                     /locus_tag="VHN39_01925"
     CDS             921..>1553
                     /locus_tag="VHN39_01925"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HEX2815124.1"
                     /translation="MILSALDLSPVTGDATQAQAVRETLEIAKAAERLGYHRLWLAEH
                     HNIQGLGSPAPEILIAALTQATSTIRLGSGGVMLVNYSPLKVAEVFMELEALAPGRID
                     LGLGRALGTDARTGGALRSVGSDAFPQYFHLLTSWLLDASGKAPIGDEHPLHDIHANP
                     AGPSHPDVFVLCTSEESATFAGQMGVGMVFAEFIARTDGGPAVRAMNSANT"
BASE COUNT          241 a          582 c          509 g          221 t
ORIGIN      
        1 gaaggtctcg cgggcgcgcg cccgcgagac cttcgactgg tcggtcgtct accgccgcta
       61 ccaggatctg tgggcggagc aggacgccat tcgccgccgc gccatcgccg atccgccgac
      121 gcaggactgg ctcgccctgg cgccccgcaa cgctgtggac cacaagggtc ccttcgacag
      181 gttcgccagc tttccgacgc accacgtggg accggccacc gtggtggcgc tgaccgcgac
      241 ggggaccccc gaggcctacc gcaagatcgc gcagcaccag ctgatcgagc gttggcacat
      301 cgcgccagaa gtcttcgacc gcgtccacga cgccctgcag gcaggccccg cgaccgtcga
      361 ggcgctgatg gccaagaccg gattcacctc ggtccagaca actgagatcg tcgcgcgcct
      421 ggcgaaggtc gacgtggtct ccctggccgt cggctgacgc gcgccgcggc gcagcaggca
      481 catcggctct ggacagcgcg gcttgcccga tcccctatgg cggtcgagga gacgccgaat
      541 gatcgaggcc gcctgccatt gcggggccgt gcgcctgacg gcgccgagcg cgcccgacac
      601 cgtgacggag tgcaactgct ccatctgccg caagctcgcc gcgcgctggg cctactacaa
      661 gccgtcggac gtgggcatgc ccagggccgg ctccacccag ccctacgtct ggggcgaccg
      721 gatgctggcc ttccatcgct gcaagacctg cggcgtcacc acccactggc agagcctcga
      781 cggcgcccag gagcgcatgg cgatcaacgc ccggctggtg gacggtctgg actggccggc
      841 catacgcatc cgccagttcg acggggccga cacctggaaa tacctggacg aggcgtgatc
      901 gcgttcccac ttcagcgccc atgatcctct ccgcgctcga tctctccccc gtcacaggtg
      961 acgcgaccca ggcccaggcc gtccgcgaaa ccctcgagat cgccaaggcc gccgagcgcc
     1021 tcggctatca ccgcctgtgg ctggccgagc accacaacat tcaagggttg ggctcgccgg
     1081 cgccggagat cctgatcgcg gcgctgaccc aggcgaccag caccatccgg ctgggctccg
     1141 gcggggtgat gctggtaaac tactccccgc tgaaggtcgc cgaggtgttc atggagctgg
     1201 aggcgctggc ccccggccgc atcgacctgg gcctcggccg cgcgctgggc acggacgccc
     1261 gaaccggcgg cgccctgcgc tcggtggggt cggacgcctt cccgcagtac ttccatctcc
     1321 tgaccagttg gctgctggac gcctcgggca aggccccgat cggcgacgag catcccctgc
     1381 acgacatcca cgccaaccca gccggcccct cgcacccgga cgttttcgtg ctctgcacct
     1441 ccgaggaaag cgcgaccttc gccggccaga tgggcgtcgg catggtgttc gccgagttca
     1501 tcgcgcgcac cgacggcgga ccggcggtgc gcgcgatgaa ctcggcgaat acc
//
LOCUS       DATAJL010000104         1825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14509,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000104 DATAJL010000000
VERSION     DATAJL010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14509"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            247..1311
                     /locus_tag="VHN39_01930"
     CDS             247..1311
                     /locus_tag="VHN39_01930"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEX2815125.1"
                     /translation="MNADVQTALRSPRSYDLARKALEVMETNQVWPTVRNFELWVHYV
                     AEKESPLAQEIDRLLAAGEPITETLGAELAAQFLPEAKLNTDVLEAGDVLSKELQSVT
                     AAIESAQRSSEEYGQELATASERLEGEHAGPVKDVVQGLTIATKKVRVEAAVLEGQLA
                     ETTAELGRLRESLDQVRRDAMTDGLTNLANRKAFDERLESTCEQADAASEGMTLAILD
                     IDHFKGFNDAWGHQIGDQVLRYVASVIGRMGAAPRMAARYGGEEFAIIFPSENGRAAM
                     AVLEEIRQEVSSRSLKRRSTNEDLGTITVSAGYAERLAGESTMSLVERADAALYASKH
                     AGRNRTTAAQPMAAVAVAAA"
     gene            1390..>1825
                     /locus_tag="VHN39_01935"
     CDS             1390..>1825
                     /locus_tag="VHN39_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2815126.1"
                     /translation="MDGAQSPQEAGMKVRTEVQGRIGIITLNDPATLNAAGIELMDGL
                     TKAFESFVANPDVRAIVLTGEGRGFCSGANLSGGGSRITENPGGPNQSLLKVYNPFVS
                     AVRKSPKPLVAAVNGVAAGVGASLALVCDLIVAGESAYFLQAF"
BASE COUNT          323 a          662 c          588 g          252 t
ORIGIN      
        1 accgccgacc gcgcgacagg gacgcccatg agcgcgacgg gggcgacgat ggcgtggtgg
       61 gctttggccg cgacgtgccg gctttcctct ccaagccgcc gccgcctcgc tccgaggact
      121 aggtcggaaa cggggggcgt catcacgccc accttaacgc ctcgttgggt gttccggccg
      181 taaggtcgct ccccagagtt gggcccttcg catcgcgcga tgggcctagt tgggaagacc
      241 ggaaccatga acgcggacgt ccagactgcg ctgcgcagcc ccaggtccta cgatctcgcc
      301 cgcaaggcgc ttgaggtcat ggagaccaat caggtctggc cgacggtccg caacttcgag
      361 ctttgggtgc actacgtcgc cgagaaggaa agcccgctgg cgcaggagat cgaccgcctg
      421 ctggccgccg gcgagccgat caccgagacc ctgggcgcgg aactcgccgc ccagttcctg
      481 cccgaggcga agctcaacac cgacgtcctg gaggccggcg acgtcctgtc caaggaattg
      541 cagtcggtca ccgccgccat cgaaagcgcc cagcggtcca gcgaagaata cggccaggaa
      601 ctggccaccg cctccgaacg gctcgagggc gagcacgccg gcccggtgaa ggatgtcgtc
      661 caagggctga ccatcgccac caagaaggtg cgggtcgagg ccgcggtgct ggagggccaa
      721 ctcgccgaga ccaccgcaga actcggccgt ctgcgcgaga gcctcgacca ggtgcgccgc
      781 gacgccatga ccgacggcct gaccaacctg gccaaccgca aggccttcga cgagcgcctg
      841 gaatcaacct gcgaacaggc cgacgcggcc agcgaaggca tgacgctggc gatcctcgac
      901 atcgaccact tcaagggctt caacgacgcc tggggccacc agatcggcga tcaggtgctg
      961 cgctacgtcg ccagcgtcat cggccgcatg ggcgccgcgc cgcgcatggc cgcccgctac
     1021 ggcggcgagg aattcgcgat catcttcccg tccgagaacg gccgcgccgc aatggccgtg
     1081 ctggaggaga tccgccagga agtctcgtcg cgctcgctga agcgccgctc caccaacgag
     1141 gacctgggca ccatcaccgt ctcggcgggc tatgccgaac gtctggccgg cgagagcacc
     1201 atgagcctgg tggaacgcgc cgacgcggcc ctctacgcct ccaagcacgc cggccgcaac
     1261 cgcaccaccg cggcccagcc catggccgcc gtcgccgtag cggccgcgta ggcggccacg
     1321 cttttttgct ggtgtgacgc cgcggtaaag tcctttagat cgagccaagt ctcgaactgg
     1381 aggaagtcca tggacggcgc ccaatctccc caagaagccg gcatgaaggt caggaccgag
     1441 gtccagggcc gcatcggcat catcaccctg aacgacccgg ccaccctcaa tgccgccggg
     1501 atcgagctca tggacggcct caccaaggct ttcgagagct tcgtggccaa ccccgacgta
     1561 cgcgccatcg tgctcaccgg cgaagggcgc ggcttctgct ccggcgccaa cctctccggc
     1621 ggcggctcgc gcatcaccga gaaccctggc ggccccaacc agtcgctgct caaggtctac
     1681 aaccccttcg tcagcgccgt gcgcaagtcg cccaagccgc tagtcgccgc ggtcaacggc
     1741 gtggccgccg gcgtcggcgc ctccctggcg ctggtctgcg acctgatcgt ggccggcgag
     1801 agcgcctact tcctacaggc cttcc
//
LOCUS       DATAJL010000105         1941 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27412,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000105 DATAJL010000000
VERSION     DATAJL010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27412"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..728)
                     /locus_tag="VHN39_01940"
     CDS             complement(<1..728)
                     /locus_tag="VHN39_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2815127.1"
                     /translation="MTSPINKLGLGSGQFGLDQQAGARGRPRDAEAREILAIAARSGV
                     GVMEVGRHPNSAEITLGQVLPKPQPFRLTVTSVRPDRGADLVEAEIRGQLARLGVSKV
                     DAILAPSATDLFSAHGPELWDRLRKLRDEGLCRQIGVSVYASDDPVGLAKRFKPDLVQ
                     APASLLDQRMLIDGTLSELAGMGIEIHLRSIFLNGLLFLPPDRAPNHLKAAAGRISRA
                     RRLIAEGRSDPLQAALGFALSRPEA"
     gene            867..1754
                     /locus_tag="VHN39_01945"
                     /pseudo
     CDS             867..1754
                     /locus_tag="VHN39_01945"
                     /inference="COORDINATES: protein motif:HMM:NF024869.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="XdhC family protein"
     gene            complement(1778..1921)
                     /locus_tag="VHN39_01950"
     CDS             complement(1778..1921)
                     /locus_tag="VHN39_01950"
                     /inference="COORDINATES: protein motif:HMM:NF015419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815128.1"
                     /translation="MSVRPYRDQDSSLVSVFAASDALMRRLAGAEAAAAGTVVEVLPL
                     SRS"
BASE COUNT          292 a          694 c          684 g          271 t
ORIGIN      
        1 gcttccggcc gcgacagggc gaagcccagc gccgcctgca gcgggtcgga gcggccctca
       61 gcgatcaagc ggcgcgcgcg gctgatccgg ccggcggcgg cctttagatg gttcggcgcc
      121 cggtcgggcg gcaggaacag caggccattg aggaagatcg aacgcagatg gatctcgatc
      181 cccatgccgg ccagttcgga gagcgtgccg tcgatcagca tccgctggtc gagcagcgag
      241 gcgggcgcct gcacgaggtc cggcttgaac cgcttggcca ggcccaccgg gtcgtcggag
      301 gcgtaaacgg aaacgccgat ctgccgacag aggccttcgt cgcgcagttt gcgcagccgg
      361 tcccagagct cggggccgtg ggcgctgaaa aggtcggtgg cggagggcgc caggatcgcg
      421 tcgaccttgg aaacccccag gcgggcgagc tggccgcgga tctcggcctc cactaggtcg
      481 gccccacggt cggggcgcac gctggtgacg gtcaggcgga agggctgcgg tttgggcagc
      541 acctggccca gagtgatctc ggcggaattg ggatggcggc cgacctccat cacgcccacg
      601 ccggagcgcg cggcgatggc caggatctcg cgggcttcgg cgtcgcgcgg acgcccacgg
      661 gcgccggcct gctgatcgag gccgaactgt ccggagccga ggcccagctt gttgatcggt
      721 gacgtcatgt ctgaaggacg actcgggacc acttccaatg aggcggcatc ttgggcctat
      781 gatgcctaag aaggcgtatc caggaccttt ccaggacgta aattttgact gatcgcgaac
      841 cgctccccga atggccgctt ttcggcatga ccggcgacgt ccggccgacc ttgcgcgagg
      901 tgcgcgcggc gggcctggcc tgcaccctgg ccaccctgat cgccgtggag ggcggcggac
      961 cccggccggt cgggacccag atggtgttcg cggccaaatc tggaaaagag gggggcttcg
     1021 tcgccggcta tttctccggc ggctgcgtgg agtccgacgt ggccgatcac gccttcgcct
     1081 gcctggcgga cggcgagccg cgcaccctgg tctatggcga gggcagcccc tggccggaca
     1141 tccagcttct ctgcggggcc cgcatcgaga ttttcctgga gcgggtggcg gcggacgacg
     1201 ccgcgctcgc cgaactcctc ctcgcccacg ccgagcgccg cccggtggtc tgggtcagcg
     1261 acggccgcgc ccgcgaatgc gccgccgaac tctcgccctg gccggaagct caagtggtgc
     1321 gccgccacga accaacaccg cgcctgatcg tggtgggcgg cgacccgacc gcgctcacca
     1381 tcgcccaact cggcgcccaa tccgagttcg agaccacgct ggtccgcccc aaagggccaa
     1441 cctcgggccc gccgatcgcc aatatcggct acagccgcgc cgagccgcac gaagccttcg
     1501 ccgccatcgg cgtcgatccc tggactgcca tcgccatcgc cacccacgac ctggagaccg
     1561 accgcgcggc cctgcgcgcg gcgctcccct cggcggccag ctacgtgggc ctgctgggcg
     1621 cgcggcgcag gatcgccgac cggctggccc cgctgcgcgc ggagggcgcg cccgagcatc
     1681 ttttcgccaa gctccacgcc cccatcggcc tcgacatcgg cggcaaggcg ccctgggaag
     1741 tcgccgtctc ggtgatcggc gagatcatgg cgctgagtta tgaccgcgaa agcggcagca
     1801 cctcgaccac ggtcccggcc gccgcggcct cggcgcccgc cagccggcgc atcagcgcgt
     1861 cggacgccgc gaagacgctg accagcgaag agtcctgatc gcggtagggc ctgacgctca
     1921 ccccaccgtc ggcgtagctg a
//
LOCUS       DATAJL010000106         4125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_1662,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000106 DATAJL010000000
VERSION     DATAJL010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4125
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1662"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..806
                     /locus_tag="VHN39_01955"
     CDS             <1..806
                     /locus_tag="VHN39_01955"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEX2815129.1"
                     /translation="DVVGAFTAYTAFDYLHERIFDAVVLWAGDNPQEALSIAAGLRRN
                     TRLYHTPALLYMRKETYVTTSEAFHRGLSDVASPETPESETARRVVELARSYRRQMGV
                     RQALEQARGSGLMDPATGLFTQDLFAAHLGRLAQAAKIRNRALSVCVLKVADKPELKA
                     ARASGWLDKAIPQIGSMIGRLVRVEDTAARLGPEVFALALPNTPGPKGRLAGERIAAV
                     IGCTAFEAGDGNTPFVVEFDLGVAPVTSAETAGRALEEAAAHAHGLKAS"
     gene            806..1327
                     /locus_tag="VHN39_01960"
     CDS             806..1327
                     /locus_tag="VHN39_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815130.1"
                     /translation="MPTTPTNAPAWAALIPLVVIALVILRNSRARRLRIEGLWVSPVI
                     ILVLVGLSFSQQAIPTPLMLGIDIAALVVGAALGWWRARFTTITVDPATHELTSRASA
                     LGMLVILGVFAVRYAVRMYATQSASSLGVSANGIADAALVISVGLVCAQRLEIALRAT
                     RLLNEARAARPAA"
     gene            1357..1740
                     /locus_tag="VHN39_01965"
     CDS             1357..1740
                     /locus_tag="VHN39_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815131.1"
                     /translation="MSILWIMCAAALALVVMRIDWTPGRYKIGYHEGDDLNLKTVMRA
                     GILTIENSGIRIHGDTDLQIPFSAVEGLKIGPYTGIRRLFRLTFEGRKVSFAVVRFMI
                     GGQFLQGDYFKARRLESKLAEFGLI"
     gene            complement(1765..>4125)
                     /gene="mfd"
                     /locus_tag="VHN39_01970"
     CDS             complement(1765..>4125)
                     /gene="mfd"
                     /locus_tag="VHN39_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003690 - double-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEX2815132.1"
                     /translation="RQKDSVNLFEATADHAKALSAGGKRVLFASWTEGSSDRLGSMLA
                     DHGLRDVPYAAYWDAAKAANPKTPQRVVLPLESGFETDTLAVISETDILGDRLARPRR
                     RRRASNFLAEASSLTPGDLVVHIDHGIGRYDGLKTLEVQGAPHDCLELQYGGESKLYL
                     PVENIDLLTRYGAESEGVILDRLGGAAWQARKARAKTRLREMAEGLIRIAAERATRVT
                     DPVDPPHGVFDEFCARFPYEETEDQLVAIGDVLEDLSAGKPMDRLICGDVGFGKTEVA
                     LRAAFVVAMSGQQVAIVAPTTLLARQHYKTFIERFEGWPVKVRRLSRLVPAREAAETR
                     EMLKNGEVEIIIGTHAVLSKQVGFRNLGLVVVDEEQHFGVKHKEKLKELRADVHMLTL
                     TATPIPRTLQMSLSGIREMSIIATPPVDRLAVRTYITPWDPVVVREALLREKYRGGQA
                     YYVAPRVSDLPELTRFLREQVPEVKFVVGHGQMAPTQLEEVMSAFYDGQYDVLLSTTI
                     VESGLDIPTANTLIIHRADMFGLSQLYQLRGRVGRAKSRAYAYMTTPAEKQITLSAER
                     RLKVLQSLDSLGAGFQLASHDLDIRGGGNLLGEEQSGHIREIGVELYQQMLEDAVNEL
                     KSRAGQEGLENDRGWSPQINTGAAVLIPEEYVPDLNVRLSLYRRLSDAERAQDREALA
                     AELIDRFGPLPPEAGQLLKVVAIKGLCREANVAKIDVGPKGAVVSFRNDDFKNPGALI
                     EFVSKNQVAWRVRPDNKVVIRGEWETPEQRLGAAERVLTELARLAA"
BASE COUNT          631 a         1399 c         1379 g          716 t
ORIGIN      
        1 ccgacgtggt cggggcgttc accgcctaca cggccttcga ctacctgcat gagcggatct
       61 tcgatgcggt ggtgttgtgg gcgggtgaca atccccagga ggcgctgtcg atcgccgcgg
      121 gcctgcgccg caacacccgc ctctatcaca ctcccgcgct gctctacatg cgcaaggaga
      181 cctacgtcac cacctcggag gccttccatc ggggcttatc cgacgtggcc tcgcccgaga
      241 cgccggagag cgagaccgcg cgccgggtgg tcgaactcgc ccgcagctat cgccgtcaga
      301 tgggcgtacg ccaggccctg gagcaggcgc gcggctccgg cctgatggac ccggccaccg
      361 ggcttttcac tcaggacctg tttgccgccc acctgggacg cttggcccag gccgccaaga
      421 tccgcaaccg cgcgctcagc gtctgcgtcc tgaaagtcgc cgacaagccg gagctgaagg
      481 cggcccgcgc ctcgggctgg ctcgacaagg ccattcccca gatcggctcg atgatcggcc
      541 gcctggtgcg ggtagaagac accgccgcgc ggctcggtcc cgaggtcttc gcgctcgcgc
      601 ttcccaacac gccggggccc aagggtcgcc tggccggcga gcggatcgcc gcggtgatcg
      661 gctgcaccgc gttcgaagca ggtgacggca acaccccatt cgtggtggaa ttcgatcttg
      721 gagtcgcccc ggtgacctct gccgagaccg ctggtcgcgc gctggaggag gccgcggcgc
      781 acgcgcacgg attgaaggcc agctgatgcc cacgacgccg acgaatgcgc ccgcctgggc
      841 cgccctgatt ccccttgttg tgatcgcgct agtgatcctg cgcaactccc gggcccgccg
      901 gctgcggatc gagggactct gggtctcccc ggtgatcatc ctggtgttgg tcggtctttc
      961 cttcagccag caggccatac cgaccccgct gatgctcggc atagacatcg ccgcgctggt
     1021 cgtcggcgcc gcgctggggt ggtggcgcgc ccggttcaca acgatcacgg tcgatcccgc
     1081 cacccacgag ctgaccagtc gggcctcggc gctcggcatg ctggtgatcc tgggggtttt
     1141 cgccgtgcgc tacgccgtcc gcatgtacgc cacgcaaagc gccagctcgc tgggcgtctc
     1201 ggccaacggc atcgccgacg ccgccctggt gatttcggtg ggcctggtct gcgcccaacg
     1261 gctggagatc gcgctcaggg ccacgcgcct gctgaacgag gcgcgggccg cacggccggc
     1321 cgcctgatca agggccgttc aaagggggaa atgcacttgt ccattctctg gattatgtgc
     1381 gccgcggcgt tggcgctcgt ggtcatgcga atcgactgga cgccggggcg ctacaagatc
     1441 ggctaccacg agggtgacga tctgaacctc aagaccgtca tgcgagcggg cattctgacg
     1501 atcgagaatt ccggcatccg aattcacggc gatacggacc tccagatccc atttagcgcc
     1561 gtcgagggtc ttaaaatcgg tccgtacacg ggaattcgcc ggctgttccg gctgacgttc
     1621 gagggacgaa aggtttcttt cgcagtcgtc cgattcatga tcggcgggca gtttctccag
     1681 ggcgattatt tcaaagcgcg acgtctagaa tcgaaactcg ccgagttcgg gctcatctaa
     1741 cggacgatcc cgggggccca gctctcaggc tgccagccgg gccagttcgg tcaggacccg
     1801 ttcggcggcg cccagccgct gttccggggt ttcccactcg cccctgatca ccaccttgtt
     1861 gtcgggacgc acccgccagg cgacctggtt cttgctgaca aactcgatga gcgcgccggg
     1921 gttcttgaag tcgtcgttgc ggaaggagac gaccgcgccc ttgggcccca cgtcgatctt
     1981 ggcgacattg gcttcgcggc agagcccctt gatggcgacg actttcagca gttgtccggc
     2041 ctcgggcggc agcggcccga agcggtcgat cagctcggcg gccaacgctt cgcggtcctg
     2101 cgcccgctcg gcgtctgaca gacgacggta aagcgacaga cgcacgttga ggtcggggac
     2161 atattcctcg gggatcagca ccgcggcgcc ggtgttgatc tgcggcgacc acccgcggtc
     2221 gttctccagg ccctcctgcc ccgcgcggga cttcagctcg ttgaccgcgt cctccagcat
     2281 ctgctggtaa agctcgacgc cgatttcgcg gatgtggccg gactgttcct cgcccaagag
     2341 gttcccgccg ccgcgaatgt ctaggtcatg gctggcgagc tggaagccgg cgcccaggct
     2401 gtccagcgat tgcagcacct tcaaccgccg ctcggccgac agcgtgatct gcttttccgc
     2461 gggcgtcgtc atataggcgt aggctcggct cttggcccgg ccgacgcggc cgcgcagctg
     2521 gtagagttgg gagaggccga acatgtcggc gcgatggatg atcaaggtgt tggcggtcgg
     2581 gatgtcgagg ccgctctcca cgatcgtggt cgagagcaga acgtcgtact ggccgtcgta
     2641 gaaggcgctc atcacctcct cgagctgggt cggcgccatc tggccgtgac cgaccacgaa
     2701 cttcacctcc ggcacctgct cacgcaggaa acgggtcaac tccggcaggt cggaaacccg
     2761 cggagccaca tagtaggcct ggccgccgcg gtatttctcg cgcagcaggg cctcgcggac
     2821 caccaccgga tcccaggggg tgatgtaggt cctgacggcc aggcgatcga ccggcggggt
     2881 ggcgatgatc gacatctctc ggatgccgga gagcgacatc tgcagggtcc gcgggatcgg
     2941 cgtggcagtc agcgtcagca tgtgcacgtc ggcgcgaagc tccttgagct tctccttgtg
     3001 cttgacgccg aagtgctgct cctcgtcgac cacaaccagg ccgaggttgc ggaagccgac
     3061 ctgcttggag agcaccgcat gggtgccgat gatgatctcc acctcgccgt ttttcagcat
     3121 ctcgcgggtc tcggccgcct cgcgggccgg aaccaggcgc gacaggcgcc gcaccttcac
     3181 cggccagccc tcgaagcgct cgatgaaggt cttgtagtgc tggcgggcga gcagggtcgt
     3241 tggagccacg atcgccacct gctggccgct catggccacc acgaacgccg cgcgcaacgc
     3301 cacctccgtt ttgccgaagc ccacgtcgcc gcagatcagg cggtccatag gcttgccggc
     3361 tgagaggtcc tccagcacgt cgccgatggc caccagctgg tcctcggtct cctcgtaggg
     3421 gaagcgggcg cagaactcat cgaacacccc gtgcggcgga tcgacgggat cggtgacgcg
     3481 ggtggcgcgc tcggcggcga tgcggatcag gccctcggcc atctcgcgca ggcgggtctt
     3541 ggcgcgggcc ttgcgcgcct gccaagccgc cccgcccagc cggtcgagga tcacgccctc
     3601 ggattccgcc ccatagcggg tcaggaggtc gatgttctcc accggcaggt agagtttgct
     3661 ctccccgccg tactggagct ccaggcagtc gtgcggcgcg ccctgcacct ccagggtctt
     3721 caggccgtcg tagcggccga tgccgtggtc gatgtggacc accaggtcgc ctggcgtgag
     3781 cgacgaggcc tccgccagga agttcgatgc gcgccgacgg cgcctgggcc gcgccagcct
     3841 gtcgcccagg atgtcggtct cggagatgac ggcgagcgtg tccgtctcga agccggattc
     3901 caagggtaag acgacccgct gcggcgtctt ggggttggcc gccttcgccg cgtcccaata
     3961 ggcggcatag ggcacgtcgc gcagcccgtg atccgccagc atcgagccca accggtcgga
     4021 ggagccctcg gtccatgagg cgaacagcac ccgcttgccg ccggccgaca gggctttggc
     4081 gtggtcggca gtggcctcga agaggttgac gctgtccttc tgccg
//
LOCUS       DATAJL010000107         4775 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40401,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000107 DATAJL010000000
VERSION     DATAJL010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4775)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4775)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4775
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40401"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(81..1115)
                     /locus_tag="VHN39_01975"
     CDS             complement(81..1115)
                     /locus_tag="VHN39_01975"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2815133.1"
                     /translation="MDWRKITAAAAASLALALMLQVAPAAAQAPAVAASYDGLKVFMC
                     GTSGPLPVKDRAKACVAIQAGGSLYMVDVGPESTENMMAWRMPMATAKAVFLTHLHSD
                     HIGEVGEFNMQSWVAGRPAPLALVGPPGTDRVAAGFNEAYGPDHGFRNAHHEHGTVKL
                     PIAAGLLQAQVVPVPASGTAVVWRQDGLTVTAIVVHHNPVTPAYGYRFDYKGRSVVVS
                     GDTIKWPPLAAAAKGADVLIHEAQNSDMTKQLSQALQMMGNPRMSSIMADTLTYHTTP
                     VEAADIARMAGVKRLVLYHITQAGLPMFNPEAFTKGMDAGGPLDWRISRDGMTIELPA
                     GGTDIKFGQF"
     gene            1196..1846
                     /locus_tag="VHN39_01980"
     CDS             1196..1846
                     /locus_tag="VHN39_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX2815134.1"
                     /translation="MTLSYDLYWSFRSPYSYLVTPRLVALERDYDVVCNVRPVYPLAV
                     RTPEFFEQQDPLWIRYFMTDVFREAAFLGLPFRWPRPDPVQQSPEEGYRMKQPHIHRL
                     THLGVAAAQRGRGLAFLDEVSTMIWGGGTDNWHEGDHLARAAERAGLDLAEMAAAADA
                     DPAPFAAVVEENQVAQRAAGHWGVPMMVFNNEAFFGQDRFDQLKWRLEQQGLKRRA"
     gene            1959..3089
                     /locus_tag="VHN39_01985"
     CDS             1959..3089
                     /locus_tag="VHN39_01985"
                     /inference="COORDINATES: protein motif:HMM:NF013179.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HWE histidine kinase domain-containing protein"
                     /protein_id="HEX2815135.1"
                     /translation="MPADHDSRLSSLIIENALGYAIFTMDLDGLVTTWSRGAEAILGY
                     TRDEALGMAFRELFTAPDREIGADMAEIAKAKQNGRAEDTRWHQRKDGSRFWSNGMTM
                     GIYGPELTGLLKVLRDETPAKFADDQRVLLLNELNHRIKNTLATVQSITEQTLRAANV
                     DPTVRRDLTNRLMAVSEAHNVLVQENWAGADLSTIVHQALAPHDHLGGGRFTVDGPPV
                     RLSPQQAVSVALTLHELATNALKYGALSVPEGHVELLWNLSHDHVGARTISVLWRESG
                     GPPVTPPQHTGFGTRLIARSFGEESGGQARIDFPPEGVQCVMQLPLSVSGEIPPPLDV
                     ARRTFAPIPQIREPLAPGPDGQTGPLVGAVPVEDEAAVVPLT"
     gene            complement(3195..3269)
                     /locus_tag="VHN39_01990"
     tRNA            complement(3195..3269)
                     /locus_tag="VHN39_01990"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3235..3237),aa:Val,seq:cac)
     gene            complement(3321..4034)
                     /gene="gph"
                     /locus_tag="VHN39_01995"
     CDS             complement(3321..4034)
                     /gene="gph"
                     /locus_tag="VHN39_01995"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287571.1"
                     /note="PGP is an essential enzyme in the glycolate salvage
                     pathway in higher organisms (photorespiration in plants).
                     Phosphoglycolate results from the oxidase activity of
                     RubisCO in the Calvin cycle when concentrations of carbon
                     dioxide are low relative to oxygen. This enzyme is a
                     member of the Haloacid Dehalogenase (HAD) superfamily of
                     aspartate-nucleophile hydrolase enzymes (PF00702); Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA];
                     GO_process: GO:0009853 - photorespiration [Evidence IEA];
                     GO_process: GO:0043094 - cellular metabolic compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HEX2815136.1"
                     /translation="MGTRRRPAEVSLAGAVIAFDLDGTLVDTAPDLVGTLNVILAEEG
                     LRPLAMAHARDLIGHGARRLLERGFQAAGALLPAERMPELFDRFIVHYQAHIADESRP
                     FPGAVAALEALRADGARLAVCTNKPTGLSNALLTTLGIGRLFDAVVGPDAAPAAKPDP
                     RHLETAVFAAGGSLSRALMVGDAATDAGAARAAKVPLILVSFGYTEIPARELAPDILI
                     DHFDELPAACRRLLGACEP"
     gene            complement(4024..>4775)
                     /locus_tag="VHN39_02000"
     CDS             complement(4024..>4775)
                     /locus_tag="VHN39_02000"
                     /inference="COORDINATES: protein motif:HMM:NF016165.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transferrin receptor-like dimerization
                     domain-containing protein"
                     /protein_id="HEX2815137.1"
                     /translation="LQHLGLPSIDFGYGGEGESGGVYHSLYDDYQHHSQFVDPGFAYD
                     ALLAKTVGRAVMRLADADLPVQRYGDFADTVAGYLDEVKKLADTTRDAGRTQAKLLGS
                     NAYELAADPTKPHKAPAPFTASPPMNFAALDSAVAKLKSSAAAFDTALTAKGEGLSKA
                     QRVKLDAVVRPLDQSLLRPEGLPGRPWYMNMVYAPGRFTGYGAKTLPGVREAIEERRF
                     DDAQKYVGITGLALNAYAGELDKATAIINGN"
BASE COUNT          743 a         1598 c         1681 g          753 t
ORIGIN      
        1 acgccgagcg ggcggacctg atcgagcagc accagccgcc catgaacctg ggcgccccgc
       61 cccggagctg acgccgaccc ctagaactgc ccgaacttga tgtcggtccc gccggccggc
      121 agttcgatgg tcatgccgtc gcgcgagatg cgccagtcaa gcggtccgcc ggcgtccatg
      181 cccttggtga aggcctcggg attgaacatc ggcaggccgg cctgggtgat gtgatagagc
      241 accagccgct tgacgccggc catgcgcgcg atgtccgccg cctccaccgg ggtggtgtga
      301 taggtcaggg tgtcggccat gatcgagctc atccgcgggt tgcccatcat ctgcagggcc
      361 tgcgacagct gcttggtcat gtcggaattc tgcgcctcgt ggatcagcac gtcggcgccc
      421 ttggcggcgg cggcgagggg cggccacttg atggtgtcgc cgctgaccac gaccgaacgg
      481 cccttgtagt cgaagcggta gccgtaggcc ggcgtcaccg gattgtggtg cacgacgatg
      541 gcggtgacgg tcaggccatc ctgccgccag acgacggccg tgccgctggc cggaaccgga
      601 accacctggg cctgcaagag gcccgcggcg atcggcagtt tcaccgtccc gtgctcgtgg
      661 tgggcgttgc ggaagccgtg gtcggggcca taggcctcgt tgaagccggc ggcgaccctg
      721 tcggtccccg gcgggcccac caaggccagc ggcgcgggcc ggccggcgac ccagctctgc
      781 atgttgaact cgccgacctc gccgatgtgg tcggagtgca ggtgggtcag gaacactgcc
      841 ttggccgtgg ccatgggcat gcgccaggcc atcatgttct cggtggactc cggcccgacg
      901 tcgaccatgt agagcgaccc gcccgcctgg atcgccacgc aggccttggc gcggtccttg
      961 accggcaggg ggcccgaggt gccgcacatg aagaccttca ggccgtcata gctggccgcc
     1021 acagcgggcg cctgggccgc cgcgggtgcg acctgtaaca tcagcgccaa cgccagactg
     1081 gccgccgccg cggccgtgat ctttcgccaa tccattgggg tccccacttg ctgtcgccaa
     1141 acttatggca caccttgtgt cacaatatcc agtcagctct ccagaggcgg ccgtcatgac
     1201 gctcagctac gacctctact ggtccttccg ctcgccctat tcctacctgg tgacgcccag
     1261 gctggtggcg ctggagcggg attacgacgt cgtctgcaat gtgcggccgg tctatccgct
     1321 ggcggtcaga acgccggagt tcttcgagca gcaggatccc ttatggatcc gctacttcat
     1381 gaccgacgtg ttccgcgagg ccgcgttcct cggcctgccg ttccgctggc ccaggcccga
     1441 tcccgtccag cagtcgccgg aggagggcta ccggatgaag cagccccaca tccaccggct
     1501 gacccacctg ggtgtggcgg ccgctcagcg gggcaggggc ctggccttcc tcgacgaggt
     1561 cagcacgatg atctggggcg gcgggaccga caactggcac gagggcgacc atctggcccg
     1621 cgctgccgaa cgcgccggcc tcgacctcgc cgagatggcc gccgccgccg acgccgaccc
     1681 cgcgcccttc gcagctgtcg tcgaggaaaa tcaggtcgcc caacgcgccg ccggccactg
     1741 gggcgtgccg atgatggtct tcaacaacga agccttcttc ggccaggacc gcttcgacca
     1801 gctcaaatgg cggcttgagc agcagggtct caagcggcgg gcctagctgt cggcggcgcg
     1861 gcctggcgtc cagagctatg tcggccagcc ggaataaagc ggccggcaag tgggcgaagg
     1921 ggtcttctgc cgcgttggcg tggggttagg agcccaccat gccagcggac catgattcac
     1981 ggctgtcctc attgatcatc gagaacgcgc taggctacgc gatcttcacc atggatctgg
     2041 acgggctggt gaccacctgg agccgcggcg ccgaggccat cctgggctac acccgcgatg
     2101 aagccctcgg aatggccttc cgggaacttt tcaccgcgcc ggatcgggaa atcggcgccg
     2161 atatggccga aatcgccaag gccaagcaga acggccgggc cgaggacacc cgctggcacc
     2221 agagaaagga cggctcgcgg ttctggtcca acggcatgac catggggatc tacggccccg
     2281 agctgaccgg ccttctgaag gtgctccggg acgagacccc cgcgaaattc gccgacgacc
     2341 agcgtgtgct tctgctcaac gagctcaacc atcgcatcaa gaacacgctg gccaccgtgc
     2401 agtcgatcac cgagcagacc cttcgagccg cgaacgtcga tccgacggtt cggcgcgacc
     2461 tcacgaaccg cctgatggcg gtctcggaag ctcacaacgt tctggtccag gaaaactggg
     2521 cgggcgccga cctcagcacg atcgtgcacc aggccctggc gccccacgac caccttggcg
     2581 gcggcaggtt caccgtcgat ggaccgccgg tgaggctcag tccgcagcag gcggtttcgg
     2641 tcgccttgac gctgcacgag ctcgccacca acgccttgaa atacggcgcc ctgtccgtgc
     2701 cggagggtca cgtggagctc ctctggaacc tttctcacga ccacgtcggc gccagaacta
     2761 tcagcgtgct gtggcgggag agcggtggcc ctccggtcac cccgccgcag cacaccggct
     2821 ttggcacgcg cttgatcgcc cgcagcttcg gtgaggaaag cggcggtcag gcccgcatcg
     2881 atttcccgcc ggaaggtgtg cagtgcgtga tgcagctccc gttgtcggtc agcggagaaa
     2941 tcccgccgcc gctggatgtc gcacgccgaa ccttcgcccc gattccgcag atcagggagc
     3001 ctctcgcgcc cgggccggac gggcagacag ggccgctggt aggcgccgtt ccggtggaag
     3061 acgaggctgc ggtcgtgcct ctgacctagc gagccgggcc cggtcccgga gcgtgcctgg
     3121 tcgagcccgc gtcgcgccgc agttcgtttc cggagcgcgg cggcgagagt gatcgccaag
     3181 gtcggggaac gcgatggtgg atgctacagg gattgaacct gtgaccccct cggtgtgaac
     3241 gaggtgctct cccgctgagc taagcatccg ctcgcgcaac tggcgctagt cgcgaaggat
     3301 ggggcgtata gcctgcgggc ttagggctcg caagcgccga gcaggcggcg acacgcggct
     3361 ggcagctcgt cgaagtggtc gatcaggatg tctggggcca gctcgcgagc ggggatttcg
     3421 gtgtagccga agctgaccag gatcagcggg accttggccg cccgcgccgc cccggcgtcg
     3481 gtggcggcgt cgccgaccat gagcgcgcgg ctgagcgacc ctcccgcggc gaagaccgcg
     3541 gtctccaggt ggcgcgggtc gggcttggcg gcgggcgcgg cgtcggggcc gacgacggcg
     3601 tcgaacaacc gcccgatgcc aagcgtggtg agcaaggcgt tggagaggcc ggtcggcttg
     3661 ttggtgcaga cggccaggcg ggcgccatcg gcgcgcaagg cctccagggc cgcgaccgct
     3721 ccgggaaacg gccggctctc gtcggcgatg tgggcctggt agtggacgat gaagcgatcg
     3781 aagagctcgg gcatccgctc cgcgggcaag agcgcgccgg ccgcctggaa gccgcgctcc
     3841 agcagacgcc gcgccccatg accgatcagg tcgcgggcgt gggccatggc gagtggcctc
     3901 agcccttcct cggccaggat gacgttcagc gtgccgacca gatccggcgc ggtgtcgacc
     3961 agggtgccgt ccagatcgaa agcgatgacc gcgccggcga ggctgacctc agccggcctc
     4021 cgcctagttc ccattgatga tcgcggtcgc cttgtcgagt tcgccggcat aggcgttgag
     4081 cgccaggccg gtgatgccga catacttctg ggcgtcgtcg aagcgccgct cctcgatggc
     4141 ctcgcgcacg ccgggcaggg tcttggcgcc atagccggtg aagcggccgg gggcatagac
     4201 catgttcatg taccagggcc ggccgggcag gccttcgggc cgcagcaggc tctggtccag
     4261 cggccggacc acggcgtcca gcttgacgcg ctgggctttg gagaggccct cgcccttggc
     4321 ggtcagcgct gtatcgaagg ccgcggcgct cgatttcagc ttggcgacgg cgctatccag
     4381 cgccgcgaag ttcatcggcg gcgaggcggt gaacggggcg ggcgccttgt gcggcttggt
     4441 cgggtcggcg gccagctcgt aggcgttgga gcccagcagc ttggcctggg tgcggcccgc
     4501 gtcgcgggtg gtgtcggcga gcttcttcac ctcgtcgagg tagccggcga cggtgtcggc
     4561 gaagtcgccg tagcgctgca ccggcaggtc ggcgtcggcg agccgcatga ccgcgcggcc
     4621 cacggtcttg gccaacaggg cgtcataggc gaagcccggg tccacgaact ggctgtgatg
     4681 ctgatagtcg tcatagagcg agtgataaac cccgccgctc tcgccctcgc cgccgtagcc
     4741 gaagtcgatg gagggcaggc cgaggtgctg cagga
//
LOCUS       DATAJL010000108         6056 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14618,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000108 DATAJL010000000
VERSION     DATAJL010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6056
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14618"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            169..2853
                     /locus_tag="VHN39_02005"
     CDS             169..2853
                     /locus_tag="VHN39_02005"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEX2815138.1"
                     /translation="MLEKTFDPKSVEPRLYAAWEASGGFKPIDDPAAEPFSIVIPPPN
                     VTGSLHIGHALNNTLQDVLIRFERMRGKAALWLPGTDHAGIATQMVVERQLAEAGNQS
                     RRDLGRDAFVEKIWEWKAKSGGTITNQLKRLGASCDWSRERFTLDEGLSAAVRKVFVT
                     LYREKLIYRDKRLVNWDPHFQTAISDLEVEQREVDGHYWHFAYPLEDGSGEIVVATTR
                     PETMLGDTAVAVHPTDERYKAMIGRAVRLPIVNRPVPIIADEYADPEKGSGAVKITPA
                     HDFNDFMVGKRNNLPMINIFDDFARVNDNAPAEYRGLDRFAARKKVVEEFERLGLLRE
                     VEKTRHMVPHGDRSGVVVEPYLTDQWYVNAEVLAKPAIKAIEDGSTVFVPKAWEKTYF
                     EWMRNIQPWCISRQLWWGHRIPAWFGPGGKIFVAETEAEAKAQALEHYGREEPLRQDE
                     DVLDTWFSSALWPFSTLGWPEKTEDLSRFYPTHTLITGFDIIFFWVARMMMQGIHFMG
                     GQPPFKRIFINALVRDAEGKKMSKSKGNVMDPLELVDDYGADALRFTLTAMSGQARDI
                     KLSRERIEGYRNFGTKLWNATRFTQMNGAQRAEGFDPAKVKLPINRWIVGETTRTAQA
                     VTAALDTCGFDAAAEGLYRFVWRQYCDWYVELSKPVLGKPDEPSADEAARDETRATAA
                     WVLDVILKLLHPVMPFLTEELWGQTQALGAARDHKGFLMTAPWPQLPSSLIDPKADAV
                     IGLIVETIAEGRSVRAELNVPNSAKPPLLVVDATEAQRTVLQNAAPLIMQMLRVAEVR
                     IADAPPPGAIPYVVEGATLALPVAEFIDVAAERARLGKDIANLAADIDRTARKLANAD
                     FVARAPEEVVEENRERLADAEAAKAKLEAALSRLTAVV"
     gene            complement(2860..3492)
                     /locus_tag="VHN39_02010"
     CDS             complement(2860..3492)
                     /locus_tag="VHN39_02010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2815139.1"
                     /translation="MITISAFRWVPEFARGRVRDLRARWALEEAGLPYRTRLLEQGDQ
                     DKPEYRAVQPFGQVPILEEAGETIFESGAIVLHIGERSETLLPKDPAARVRAVQWLIA
                     ALSSIEPHVMNVVVASVQADQEWAKLRRQGAMDFALHRLSSLAAHLGDKPYLDGDHFT
                     AGDLMMVTVLRILPDLIVDERLKAYVERCTARPAFQRALAAQMGDFRAAA"
     gene            complement(3654..4088)
                     /locus_tag="VHN39_02015"
     CDS             complement(3654..4088)
                     /locus_tag="VHN39_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4260 domain-containing protein"
                     /protein_id="HEX2815140.1"
                     /translation="MSTTTAYEGQTSSAHTGFSGATRGGITVLLRLEAAAGLLLSIAA
                     YRAMGGGWAMFALLILAPDLSMLGYLLNRRFGAAAYNFGHSYLSAAALAGLGWSLHQP
                     MLEQAALIWAAHISVDRLVGYGLKYPQAFGATHLGWVGKRRA"
     gene            4362..5537
                     /locus_tag="VHN39_02020"
     CDS             4362..5537
                     /locus_tag="VHN39_02020"
                     /inference="COORDINATES: protein motif:HMM:NF022623.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 172 protein"
                     /protein_id="HEX2815141.1"
                     /translation="MPAAAQPAPVASGVQSLFLLSDARSRSIGPENLTGEPGMGGRTE
                     LKDGSAKYAAKDLGRGWKVNPYIVIPAGTTFTLGDAKGPGVINHIWMTLGGAADYRSA
                     ILRIYWDGEATPSVETPAGDFFAAGWGRGFEPVINSAVVAVNPGSAFNSFWQMPFRRQ
                     ARLTMENRSTKALTIYYQIAVTQTAVPANAGYFHAQFRMGKADPVAGAYTLLDGVKGK
                     GQYVGTYLRHRALSPGWWGEGEVKFYMDGDKEFPTIAGTGEEDYFLGSYSYFKHDPKG
                     PYVETSYSSTYAGFLATQPRNIDPDYFKPDGDRRYGEYRWHILDPVRFQKDLKVTIQN
                     IGWKGASLTRIIGDGTYLPLHDDLSSVAYWYQAEPHAPFPTLPSDAALNDLPKPAAP"
     gene            5549..>6056
                     /locus_tag="VHN39_02025"
     CDS             5549..>6056
                     /locus_tag="VHN39_02025"
                     /inference="COORDINATES: protein motif:HMM:NF015000.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008081 - phosphoric diester hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase family
                     protein"
                     /protein_id="HEX2815142.1"
                     /translation="MVQPQIIAGACGYGVWPANSIEGARACNGAPVDGIEIDVHLTAD
                     GHVVAHHDDRIAADQSRLDGVWLDAPGPLLRNASLETLRAYDLGRTRPGSPYALRYPS
                     RQGLDGVVMPTLPELLAVLAQAPGPRRWIFVEIKTDPPDYRESADPVRLLEAVIADLE
                     AASWLDRAK"
BASE COUNT         1017 a         2137 c         1997 g          905 t
ORIGIN      
        1 cgctaggcct gttgctcccc gcagggggag ccgtcagcga agctgactga gggggcttcc
       61 ccagaggtca gcgccgaccg tttcccgaac caattgagtg gaaaccccct ccggccctcc
      121 aggccacctc cccctgcggg ggaggaacgt gtaagcaccg ccccagccat gcttgaaaag
      181 accttcgatc cgaaatccgt cgagccgcgc ctctatgccg cctgggaggc gtcgggggga
      241 tttaagccca tcgacgaccc ggccgccgag ccgttctcga tcgtcatccc gccgcccaac
      301 gtcaccggct cgctgcatat cgggcacgcg ctgaacaaca ccctgcagga cgtgctgatc
      361 cgtttcgagc ggatgcgggg caaggccgcg ctgtggctgc ccggcaccga ccacgccggc
      421 atcgccaccc agatggtggt ggaacgccag ctcgccgagg ccggcaatca gagccggcgc
      481 gatctcggcc gcgacgcctt cgtcgagaag atctgggagt ggaaggccaa gtccggcggg
      541 accatcacca accagctgaa gcgcctgggc gcgagctgcg actggagccg cgagcggttc
      601 accctcgacg aggggctgtc ggccgccgtt cgcaaggtat ttgtgaccct ttacagagaa
      661 aagctcatct accgcgacaa gcggctggtg aactgggacc cgcacttcca gaccgcgatc
      721 tccgacctcg aggtcgagca gcgcgaggtc gatggccact actggcactt cgcctatccg
      781 ctggaggacg gctccggcga gatcgtggtc gccaccaccc ggcccgagac catgctgggc
      841 gacaccgccg tcgctgtgca ccccaccgac gaacgctaca aggcgatgat cggccgcgcc
      901 gtgcggctgc ccatcgtcaa ccggccggtg ccgatcatcg ccgatgagta cgccgaccct
      961 gaaaagggct ccggcgcggt gaagatcacg cctgcccatg acttcaacga cttcatggtc
     1021 ggcaagcgca acaacctgcc gatgatcaac attttcgacg acttcgcccg tgtgaacgac
     1081 aacgcgccgg cggaatatcg cggcctggat cgcttcgcgg cccgcaagaa ggtcgtcgag
     1141 gaattcgagc gtctcggcct gctgcgcgag gtcgagaaga cccgccacat ggtgccgcac
     1201 ggcgaccgct cgggcgtcgt cgtcgagccc tatctgaccg accagtggta cgtgaacgcc
     1261 gaggtgctcg ccaagcccgc gatcaaggcc atcgaggacg gctcgaccgt cttcgtgccc
     1321 aaggcctggg agaagaccta tttcgagtgg atgcggaaca tccagccctg gtgcatctcg
     1381 cgccagctat ggtggggcca ccgcatcccg gcctggttcg ggccgggcgg gaagatcttc
     1441 gtcgccgaga cggaggccga ggccaaggcg caggccctgg agcactacgg ccgcgaggag
     1501 ccgctgcgcc aggacgagga cgtgctcgac acctggttct cctccgcgct ctggccgttc
     1561 tcgaccctgg gctggccgga gaagaccgag gacctctcgc gcttctaccc gacccacacc
     1621 ctgatcaccg gcttcgacat catcttcttc tgggtcgccc ggatgatgat gcagggcatc
     1681 cacttcatgg gcggccagcc cccgttcaag cgcatcttca tcaacgccct ggtccgcgac
     1741 gccgagggca agaagatgag caagtccaag ggcaacgtca tggaccccct ggagctggtc
     1801 gacgactatg gcgcggacgc gctcaggttc acgctcaccg ccatgtcggg gcaggcgagg
     1861 gacatcaagc tctcccgcga gcgcatcgag ggctaccgca acttcggcac caagctctgg
     1921 aacgccaccc gcttcaccca gatgaacggc gcccagcgcg ccgagggttt cgacccggcc
     1981 aaggtcaagc tgccgatcaa ccgctggatc gtcggcgaga ccacgcgcac ggcccaggcc
     2041 gtgaccgcgg cgctggatac ttgcggcttc gacgccgccg cggaagggct ctaccgcttc
     2101 gtctggcgcc agtactgcga ctggtacgtg gaactctcca agcccgttct cggcaagccc
     2161 gacgaaccta gcgccgacga ggcggcccgc gacgagaccc gcgccacggc cgcctgggtg
     2221 ctcgacgtga tcctgaagct cctgcacccg gtcatgccgt tcctcaccga ggagctctgg
     2281 ggccagaccc aggcgctggg cgcggcgcgc gaccacaagg gcttcctgat gaccgcgccc
     2341 tggccgcagc tgccgtcgag cctgatcgac cccaaggcgg acgcggtgat cggcctgatc
     2401 gtcgagacca tcgccgaggg ccgctcggtc cgtgccgagc tcaacgtgcc gaactccgcc
     2461 aagccgccgc tgctggtggt cgatgcgacc gaggcccagc gcaccgtcct gcagaacgcc
     2521 gcccccctga tcatgcagat gctcagggtg gccgaggtgc gcatcgccga cgccccgccg
     2581 cccggcgcga tcccctatgt cgtggaaggc gcgacgctcg cgctcccggt cgccgagttc
     2641 atcgacgtcg ccgccgaacg cgcccgcctg ggcaaggata tcgccaacct cgccgccgac
     2701 atcgaccgca ccgccaggaa gctcgccaac gccgacttcg tcgcccgcgc gcccgaggag
     2761 gtggtcgagg agaaccgcga acgcctagcc gacgccgaag ccgccaaggc caagctggaa
     2821 gccgccttaa gccgcttgac cgcggtggtc tgagccgccc taagccgccg cgcggaagtc
     2881 ccccatctgc gcggcgagcg cccgctggaa ggccggccgg gcggtacagc gctcgacgta
     2941 ggccttcagg cgctcgtcga cgatcaggtc gggcaggatc cgtaggactg tcaccatcat
     3001 caggtctccg gcggtgaagt gatcaccgtc caggtagggc ttgtcgccca ggtgcgcggc
     3061 cagcgaactc agccggtgga gcgcgaagtc catggcgccc tggcggcgga gcttcgccca
     3121 ctcctggtcg gcctggacgc tcgccacgac cacattcatc acatgcggct cgatggagct
     3181 gagcgccgcg atcagccatt gcacggcccg cacccgggcg gcggggtcct tgggcagcag
     3241 ggtctcgctg cgttcgccga tgtgcaggac gatggccccg ctttcgaaga tcgtctcgcc
     3301 agcttcctcc aggatcggca cctggccgaa gggctgcacc gcacggtact cgggcttgtc
     3361 ctggtcgccc tgttccagca ggcgcgtgcg gtaggggaga cccgcttcct ccagcgccca
     3421 gcgcgcgcgc aggtcgcgca cccggcccct ggcgaattcc ggaacccaac ggaaggcgga
     3481 aatggtgatc atgcgatggt ctccttgtga tcgcgccgga cgccgggcgg gtgcgacccc
     3541 gcagcgacag gcttttgatt gcaagacgcg tcacggtccg ccgatgcgac ggcgcgagcc
     3601 agctttttca gccctgtcgc cggccgggcg cgggtttcgc ggccccagcg gccctaggcg
     3661 cgccgtttgc cgacccatcc caggtgcgtg gccccgaacg cctgcgggta cttgagccca
     3721 tagccgacga gacgatcgac gctgatgtgc gccgcccaga tcagcgcggc ctgctcgagc
     3781 atgggctggt gcaacgacca cccaaggccg gcaagtgcgg cggccgagag atagctgtgc
     3841 ccgaaattat aggcggccgc gccgaagcga cggttcagca ggtagcccag catgctcagg
     3901 tccggcgcca ggatcagaag cgcgaacatc gcccagccgc cgcccatcgc ccggtaggcg
     3961 gcgatggaaa gaaggagccc ggctgcggcc tccaggcgca ggagcacggt gatcccgccc
     4021 cgcgtcgcgc ccgaaaagcc tgtgtgcgcc gaagaggtct ggccctcata ggctgtggtc
     4081 gtggacatcg cggttccctt tcgcggcgcg ggcagcctgg cctcggcgcc tccgacttgg
     4141 gaagacttcg gattgtgggt cccgccatac aggaatgcat ggctctcccg tcctggaggg
     4201 gcagtgcttg aggcggctct cgcgcggccg caggcggtgg tctagcatcc ggcctcagcg
     4261 gtgaacccgc tcaagaaacc aggggcggaa cgatgggcgg gcggcgtttc aagcgtctgt
     4321 ggcgggtcct gacgggcgtc gttgtcatag gagccctggc cttgccggcc gccgcccagc
     4381 cggcgccggt cgcctcgggg gttcagagcc ttttcctgct ctccgacgcc cggtcgcgct
     4441 ccatcgggcc ggaaaacctc accggcgaac ccggcatggg tgggcgcacg gagctcaagg
     4501 acggcagcgc caaatatgcg gcgaaggacc tgggtcgcgg ctggaaggtc aatccctaca
     4561 tcgtcattcc cgccgggacg accttcaccc tgggcgacgc caaggggccc ggcgtgatca
     4621 accacatctg gatgacgctg ggcggggcgg ccgactaccg ctcggcgatc ctgcggatct
     4681 attgggacgg ggaggcgacg ccctcggtcg agacaccggc cggcgacttc ttcgccgcgg
     4741 gatggggccg gggcttcgag ccggtgatca attcggcggt ggtggcggtc aatcccggca
     4801 gcgccttcaa cagcttctgg cagatgccgt tccgcagaca ggcgcgcctg acgatggaga
     4861 accgcagcac caaggcgctg accatctact atcagatcgc ggtcacccag acggcggtgc
     4921 cggccaacgc cggctatttc cacgcccagt tccgcatggg caaggccgac cccgtggcgg
     4981 gcgcctacac cttgctcgac ggggtgaagg gcaagggcca atacgtcggc acctacctgc
     5041 gccaccgcgc cctcagcccc ggctggtggg gcgagggcga ggtgaaattc tatatggacg
     5101 gcgacaagga gttcccgacc atcgccggca cgggcgagga ggactacttc ctcggctcct
     5161 attcctactt caagcacgac cccaaggggc cctacgtcga gacctcctat tcctcgacct
     5221 acgccgggtt cctggcgaca cagccgcgca atatcgaccc cgactacttc aagccggacg
     5281 gcgatcgccg ctacggcgaa taccgctggc acatcctcga tccggtgcgg ttccagaagg
     5341 acctcaaggt gacgatccag aatatcggct ggaagggcgc gtccctgaca aggatcatcg
     5401 gcgacgggac ctatctgccc ctgcacgacg acctctcatc ggtcgcctac tggtaccagg
     5461 ccgagccgca cgcgccgttt ccgacgctgc cgagcgacgc ggccctgaac gacctgccca
     5521 agcccgcggc gccctgaccg cgctgcccat ggtccaaccc cagatcattg ccggcgcctg
     5581 cggctatggc gtctggccgg ccaattcgat cgagggcgct cgcgcctgca atggagcgcc
     5641 ggtggacggg atcgagatcg acgtccacct gactgccgac ggccatgtcg tggcgcacca
     5701 cgacgaccgg atcgccgccg accaaagccg tctggacggg gtctggctgg atgcgcccgg
     5761 tccgctgctg cgtaacgcca gcctggaaac cctgcgcgcc tacgacctgg gccggacgcg
     5821 gcccggctcg ccctatgccc tgcgctaccc gtcgcggcag ggcctggacg gcgtcgtcat
     5881 gccgaccttg cccgagttgc tggcggtcct ggcccaggcg cccggtccgc gccggtggat
     5941 cttcgtcgag atcaagaccg atccgccgga ctatcgcgag tccgccgatc cggtccgtct
     6001 gctggaggcg gtgatcgccg acctggaggc ggccagctgg ctggaccggg ccaaga
//
LOCUS       DATAJL010000109         2385 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14639,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000109 DATAJL010000000
VERSION     DATAJL010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2385)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2385)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2385
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14639"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1450
                     /locus_tag="VHN39_02030"
     CDS             <1..1450
                     /locus_tag="VHN39_02030"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2815143.1"
                     /translation="FKGIPYGASTGGKNRYMAPKKPTPWAGIRNSIGYGPISPQTPAS
                     LESDYSMMIAWDRHVGPGGMGEDCLNLNVWTPSVNDHAKRPVLVSFHGGGWATGSGNG
                     PMYDGAQMARLGDVVVVTVNHRLAAYGYLHLAGLGAPAEFANAGNCGVMDMVASLRWV
                     RDNIERFGGDPGRVMIFGQSGGGSKTSTLLAVPSAKGLFHRAAVQSGSTLKQATPEEA
                     SAEAAKLLKTLGIAKGNIAAIQKVPWQKLLEAQVASGGNFRPVIGDKTLPHHPFDPGA
                     PMESADVPVIISTTLHDAALRLTNFNLDEAGVAGLFRQRFGAKGGEILSAYRRENSRQ
                     TPYLTQAEAFTDATRGNSQIQALRKAALGRAPVYMYVWDWATPAFDSKFGAVHGHDVE
                     ASFHLSRNPIGGAGRKEGRMMSDRLSAAWVAFATTGDPNNSLIPHWPAYDAKTRATMV
                     FDNEMKVVDDYRGDFVRMIADAVPTTPDPRKA"
     gene            1525..>2385
                     /locus_tag="VHN39_02035"
     CDS             1525..>2385
                     /locus_tag="VHN39_02035"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEX2815144.1"
                     /translation="MTDAIQLLVGTRKGAWIYRSDAQRQTWRVQGPLFLGSIISHLVL
                     DPRDGKTLLMAAATGHLGPTIFRSTDDGETWTEAGKPPAFPKSDDPRARSVDHSFWLE
                     PGHASEPGVWWAGTSPPGLFESRDGGVSWESVAGFNDHPSYWDWCPPEAGTPDGALLN
                     QVVIDPRDAAHMYVATSGGGVFESTDRGATWAPLNKNVRCDFLPDPYPEYGQDAHFIA
                     LSPTNPDRLWQQNHCGIYRLDRPDDRWDRIGEAMPKEVGDIGFTVVPHARDADTAWVW
                     PMDGTDVWPRT"
BASE COUNT          388 a          814 c          839 g          344 t
ORIGIN      
        1 gttcaagggc attccctacg gcgcctccac cggcggcaag aaccgctaca tggcgccgaa
       61 gaagccgacg ccctgggcgg gcatccgcaa ctcgatcggc tacggcccga tctcgccgca
      121 gacgccggcg tcgctggaga gcgactattc gatgatgatc gcctgggacc ggcatgtggg
      181 gccgggcggc atgggcgagg actgcctgaa cctcaacgtc tggacgccca gcgtgaacga
      241 ccacgccaag cgcccggtgc tggtgtcgtt ccacggcggc ggctgggcca ccggctccgg
      301 caacgggccg atgtacgacg gggcccagat ggcgcgcctg ggcgacgtgg tggtggtgac
      361 cgtgaaccac cggctggcgg cctatggcta cctgcatctg gcgggcctcg gcgcgccggc
      421 ggagttcgcc aacgccggca actgcggggt gatggacatg gtcgcctcgc tccgctgggt
      481 gcgcgacaac atcgagcgct tcggcggcga cccgggccgg gtgatgatct tcggccagtc
      541 gggcggcggc tcgaagacct cgacgctgct ggccgtgccg tcggccaagg ggctgttcca
      601 ccgcgccgcc gtgcagtcgg gctcgacgct gaagcaggcg acgccggagg aggccagcgc
      661 cgaggccgcg aagctgctca agacgttggg catcgccaag gggaatatcg cggcgatcca
      721 gaaggtcccc tggcagaagc tgctggaggc ccaggtggcc tcgggcggta atttccgtcc
      781 ggtgatcggc gacaagaccc tgccgcacca tcccttcgat ccgggcgcgc cgatggaatc
      841 ggccgacgtg ccggtgatca tctcgaccac gctgcacgac gcggcgctgc ggctgacaaa
      901 cttcaacctc gacgaggccg gggtggcggg cctcttccgg caaaggttcg gggccaaggg
      961 cggcgagatc cttagcgcct accggcgcga gaattcccgc cagacgccct acctcaccca
     1021 ggccgaagcc ttcaccgacg ccacgcgggg caactcgcag atccaggcgt tgcgcaaggc
     1081 cgcgctcggc cgggctccgg tctatatgta cgtctgggac tgggcgacgc cggccttcga
     1141 cagcaagttc ggcgcggtgc acggccacga tgtggaggcc tccttccacc tgtcgcgcaa
     1201 cccgatcggc ggggcgggac gcaaggaagg ccggatgatg agcgaccggc tgtcggccgc
     1261 ctgggtggcg tttgcgacca ccggcgatcc gaacaacagc ttgatcccgc actggccggc
     1321 ctatgacgcc aagacccgcg cgaccatggt cttcgacaac gagatgaagg tggtcgacga
     1381 ctatcgcggc gacttcgtgc ggatgatcgc cgacgcggtt cccaccacgc cggacccgcg
     1441 caaggcctag gctcaccgcg gcgcagttgc gcatgcgtgt cggattgggt tgaactggcg
     1501 cgtcctcagg tcacggagga aaccatgacc gacgcgattc aactgctggt gggcacccgc
     1561 aagggcgcct ggatctatcg cagcgacgcc cagcgccaga cctggcgcgt gcagggcccg
     1621 ctgttcctgg gctcgatcat cagccacctg gtgctcgatc cgcgcgacgg caagacgctc
     1681 ttgatggccg cggcgaccgg ccatctcggg ccgaccatct tccgctccac ggacgatggg
     1741 gagacctgga ccgaggccgg caaaccgccg gcttttccga agtcagacga cccccgcgcg
     1801 cggtccgtcg atcacagctt ctggctggag ccgggacacg ccagcgaacc gggggtctgg
     1861 tgggcgggaa cctcgccgcc gggcctgttc gagagccgcg acggcggcgt gagctgggag
     1921 agcgtggccg gcttcaacga ccatccgagc tactgggact ggtgtccgcc ggaggccggg
     1981 acgccggacg gcgcgctgct gaaccaggtg gtgatcgacc cgcgcgatgc ggcgcacatg
     2041 tatgtcgcca cctccggcgg cggggtgttc gagagcaccg accgtggggc gacctgggcg
     2101 ccgctgaaca agaatgtccg ctgcgacttc ctgcccgacc cctatcccga gtatggccag
     2161 gacgcccatt tcatcgccct ttcccccacc aatccggacc ggctctggca gcagaaccac
     2221 tgcgggatct atcgcctcga caggccggat gaccgctggg accggatcgg cgaggcgatg
     2281 ccgaaggagg ttggcgacat cgggttcacc gtcgtgccgc acgcccgcga cgccgacacc
     2341 gcctgggtct ggccgatgga cggcacggac gtctggccgc gcacc
//
LOCUS       DATAJL010000110         4876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78345,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000110 DATAJL010000000
VERSION     DATAJL010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4876
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78345"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1606)
                     /gene="metG"
                     /locus_tag="VHN39_02040"
     CDS             complement(<1..1606)
                     /gene="metG"
                     /locus_tag="VHN39_02040"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEX2815145.1"
                     /translation="MPRILITSALPYINGIKHLGNLAGSMLPADVYARFQRARGVETL
                     YICATDEHGTPAELGAAEKGQDVRSYCDDQHQIQRDLYARFGISFDHFGRSSSPQNRT
                     LTQRFAQVLWEAGFLEGRTTQQVYSNADKRFLPDRYVIGTCPHCGYDAARGDQCDNCT
                     RQLDPIDLIHPRSSVSGSEDIEIRDSLHLFLKQTAFEGKLREWLSDKTGRWPVLVTST
                     AMKWLDEGLQDRGVTRDLEWGVPVNAADWGPNPAGELPDVAGLAGKVFYVWFDAPIEY
                     IASTWEWSAAKPGADPADESEYESWWRGPAAADVSYVEFMGKDNVPFHTVGFPCTLFG
                     INETLGADGKWRPSSNAPWKLVDTLKGFNWLNYYGGRFSTTHQRGVFVDAALEILPAD
                     YWRWWLVANAPESSDAVFTWEQFQAQVNADLADVLGNFVNRILKFTETRFEGVVPDGG
                     EEGELEARLRLNLQARVAELDNYLADSEFRKATAALRQIWVLGNGYLTEAAPWTAIKT
                     DRDRAAVAVRTGLNLVALFAKLSEPFI"
     gene            complement(1682..2038)
                     /locus_tag="VHN39_02045"
     CDS             complement(1682..2038)
                     /locus_tag="VHN39_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family protein"
                     /protein_id="HEX2815146.1"
                     /translation="MPLNWTALAPILLLIASNVFMTIAWYGQLKVENRAMWLIVLISW
                     GVAFFEYCLAVPANRIGRIVYEPSELKAMQEVITLAVFAVFSVLWLKEPITINHGVGF
                     ALIALGAFFVFKGPFH"
     gene            2119..3240
                     /locus_tag="VHN39_02050"
     CDS             2119..3240
                     /locus_tag="VHN39_02050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX2815147.1"
                     /translation="MRERMKSLVVAVALTLAACSPAPKKSATADTPASGTLNIYNWSD
                     YIDPALLKEFTARTGIKVRYDTFDSNEVLETKVLQGHTGYDLVVPSNHNVPRYIAASA
                     IQPLDKTKLRGLESLAPDVMARMAPFDPGAKYAVPYMQGTIGIGYNTEAVARRLPGVK
                     VDSWAVVFDPKTLAKLKDCGVYFLDASEDMYAVALNYLGKDPNSKDPKDYAAATDLLM
                     KVRPYVKKFHSSEYIDALANGDICVAIGYSGDVLQAKRRAEEARNRVSLAYAVPKEGS
                     QVWFDLFTIPADAPNAAAAYSFLNFMLEPQIIARASNYTRYANANAAATRLVDTSVRD
                     DPAAYPPPELARRLFVTTTKDQVLLREVNRQWTHVLTGQ"
     gene            3237..4223
                     /locus_tag="VHN39_02055"
     CDS             3237..4223
                     /locus_tag="VHN39_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2815148.1"
                     /translation="MSATPPLVRFEGVSKRFGDIVAVDAISLEIAEGEFFALLGPSGC
                     GKTTLMRLLAGFAVPDAGRILLNGEDIADLPPHRRPSSMMFQTYALFPHLSVERNIGF
                     GLKQQGWEKARAATRVEEMLSLVRLEGLNRRKPSELSGGQAQRVALARALAPGPRILL
                     LDEPLAALDRKLREETQLELKAIQRRLGVTFMIVTHDQDEAMVVADRIAVMKDGQIAQ
                     VGAPREVYERPASRYVAEFLGEANIFADGHGWRLVRPEKMTLSATLVTGAIAGEVAEI
                     AYFGDRIRYVVRAGPGRPLRVSRANLGPPLPLAIGDKAWVTYAPDAAVALAS"
     gene            4220..>4876
                     /locus_tag="VHN39_02060"
     CDS             4220..>4876
                     /locus_tag="VHN39_02060"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2815149.1"
                     /translation="MRRPWLAGVAPYAWLLLFFALPFLLVAKLSLSHTVLAMPPYAPQ
                     LDLSKGHAGVRAFVHQLSFETYARLTTDRLYILAYLSSLRFAGVATAILLAIGYPIAY
                     GMSRFGAATRQALLMAVILPFWISFLIRIYAWIAILKPAGLLNQALAILHIAPLSLLN
                     TDAAVIIGLVYAYLPFMVLPLYAVLGRQDERLIEAAQDLGCTPVQAFWRVTFPLSLPG
                     V"
BASE COUNT          829 a         1636 c         1593 g          818 t
ORIGIN      
        1 ggatgaaggg ctcggagagc ttggcgaaga gcgccacgag gttcaggccc gtgcgcacag
       61 cgacggccgc gcgatcccgg tccgtcttga tggcggtcca aggcgcagct tcggtcaggt
      121 atccgttccc gaggacccat atctggcgaa gcgccgcggt cgccttgcgg aactcgctat
      181 cggccagata attgtccagc tcggcgactc ttgcctggag atttaagcgc agccgggcct
      241 caagctcgcc ttcctcgccg ccgtccggaa ccaccccctc gaaccgcgtt tcggtgaact
      301 tcaggatgcg gttgacgaag ttgcccagca cgtcggcgag atcggcgttc acctgggcct
      361 ggaactgctc ccaggtgaag accgcgtcgg agctttccgg cgcattggcc accagccacc
      421 agcgccagta gtcggccggc aggatctcca gcgccgcgtc gacgaacacc ccgcgctgat
      481 gcgtggtcga gaaccggcca ccgtaatagt tgagccagtt gaagcccttg agggtatcca
      541 ccagcttcca gggcgcgttg gacgatggcc gccacttacc gtcggcgccg agggtctcgt
      601 tgatgccaaa gagggtgcag gggaagccca cggtgtggaa gggcacattg tccttgccca
      661 tgaactccac atagctgacg tcggcggccg cggggccgcg ccaccagctt tcgtactcgc
      721 tctcgtcggc cgggtcggcg ccgggcttgg cggcgctcca ttcccaggtc gaggcaatgt
      781 actcgatggg cgcgtcgaac cagacgtaga agaccttgcc ggccagcccc gcgacgtccg
      841 gaagctcgcc cgcgggattg gggccccagt ctgcggcgtt gaccggcacg ccccactcca
      901 ggtcgcgggt gacgccgcgg tcctgcaagc cctcgtccag ccacttcatc gccgtcgaag
      961 tgaccagcac cggccacctg ccggtcttgt cggagagcca ttcccgcagc ttcccctcga
     1021 aggcggtctg cttgaggaag agatgcaggc tgtcgcggat ctcgatgtcc tcggatccag
     1081 agaccgacga gcgcgggtgg atcaggtcga tgggatcgag ctgtcgggtg cagttgtcgc
     1141 actgatcgcc gcgggcggcg tcatagccgc agtgcgggca cgtgccgatg acatagcgat
     1201 ccggcaggaa gcgcttgtcg gcgttcgaat agacctgttg ggtcgtgcgt ccttcgagga
     1261 agcccgcctc ccagagcact tgggcgaagc gttgggtaag ggtgcggttc tgcggcgacg
     1321 atgagcggcc gaagtgatcg aagctgatgc cgaaccgagc ataaaggtcg cgctggatct
     1381 ggtgctggtc gtcgcagtag gaccgcacgt cctggccctt ctcggcggcg cccagctcgg
     1441 ccggagtgcc gtgctcgtcg gtggcgcaga tgtagagcgt ctcgacgccc cgagcgcgtt
     1501 ggaagcgggc gtagacgtcg gccggcagca tggaccccgc caggttcccc agatgcttga
     1561 tcccattgat gtagggcaac gcggacgtga tcaggatgcg gggcatgacg gctctcgaaa
     1621 tggggagaag gcgcggctta taggccgggc ttcccgcttc gccaaagccc cagcatcgaa
     1681 atcagtgaaa cgggcccttg aagacgaaaa aggcgcccag cgcgatcagg gcgaagccca
     1741 ccccgtggtt gatcgtgatg ggctccttca gccaaagcac ggagaagacc gcgaagaccg
     1801 ccagggtgat gacctcctgc atggccttca gttctgacgg ctcgtagacg atccgcccga
     1861 tccggttggc cggcacggcc aggcaatatt caaagaaggc gacgccccag ctgatcagca
     1921 cgatcagcca catggcccgg ttctcgacct tgagctggcc gtaccaagcg atggtcatga
     1981 acacgttgga agcgatcagc agtaggatcg gggcgagcgc ggtccagttg agcggcatcg
     2041 acggggctcc agcagctttg ccgttgaggc gagcttccct cgccctataa cctcgcgcca
     2101 cggaagggga gcgccgtcat gcgtgaacgg atgaaatcgc tggtcgttgc ggtggctctg
     2161 accttggcgg cgtgcagccc ggcgccgaaa aagtccgcga cggcggacac cccggcgagc
     2221 gggacgctga acatctacaa ctggtcggat tacatcgacc cggcgctcct gaaggaattc
     2281 accgcccgga ccgggatcaa ggtccgctac gacaccttcg actccaacga ggtgctggag
     2341 accaaggtcc tgcagggtca caccggctac gacctcgtgg tcccctccaa ccacaatgtg
     2401 ccgcgctaca tcgcggcctc ggcgatccag ccgctcgaca agacgaaact ccggggcctg
     2461 gaaagcctcg cccccgacgt catggcccgc atggcgccct tcgatcctgg cgcgaagtac
     2521 gccgtgccgt acatgcaggg caccatcggc atcggctaca ataccgaggc cgtcgccagg
     2581 cgcctgccgg gcgtgaaggt cgacagctgg gccgtggtgt tcgacccgaa gacgctggcc
     2641 aagctgaagg actgcggggt ctatttcctc gacgcctcgg aagacatgta cgcggtcgcg
     2701 ctcaactacc tgggcaaaga ccccaattcg aaggatccga aggattatgc cgcggccacg
     2761 gacctgctga tgaaggtccg tccctatgtg aagaagttcc actcctccga atacatcgac
     2821 gccctcgcca acggggatat ctgcgtggcc atcggctatt ccggcgatgt gctgcaggcc
     2881 aagcgccggg ccgaggaagc caggaacagg gtgagcctgg cctatgccgt gcccaaggaa
     2941 ggcagccagg tctggttcga cctgttcacc atccccgcgg acgcgcccaa tgcggcggcg
     3001 gcctacagct tcctgaactt catgctggag ccgcagatca tcgccagggc ctcgaattac
     3061 accagatacg ccaacgccaa tgcggcggcg accaggctgg ttgacacctc ggtgcgcgac
     3121 gacccggccg cctatccgcc gccggagctg gccaggcgcc tcttcgtcac caccaccaaa
     3181 gaccaggtcc tgctgcgcga ggtgaaccgc cagtggacgc acgttctgac cggccagtga
     3241 gcgcaacccc gcccctcgtc cgcttcgagg gcgtcagcaa gcgcttcggc gacatcgtgg
     3301 ccgtggacgc gatcagcctg gagatcgccg agggcgagtt cttcgcgctc ctcggcccct
     3361 cgggctgcgg gaagacgacg ctcatgcgtc tcctggccgg gttcgcggtc cccgacgctg
     3421 gtcgtatcct gctgaatggc gaggatatcg ccgacctgcc gccacatcgc cggccgtcga
     3481 gcatgatgtt ccagacctac gcgctgtttc cacatctcag cgtcgagagg aacatcggct
     3541 ttgggctgaa gcagcagggc tgggagaagg cccgcgccgc cacccgggtg gaggaaatgc
     3601 tgagcctggt gcggctggag ggcctcaacc gtcgcaagcc cagcgagctc tccggcggcc
     3661 aggcgcagcg ggtggcgctg gcccgcgcgc tcgcgcccgg ccccaggatc ctgctgctgg
     3721 acgagccgtt ggccgcgctc gaccgcaagc tgcgcgagga gacccaactg gagctgaagg
     3781 cgatccagcg aaggctcggc gtcaccttca tgatcgtcac ccatgaccag gacgaggcca
     3841 tggtggtcgc tgaccggatc gcggtgatga aggatggcca gatcgcccag gttggggccc
     3901 ctcgcgaggt ctacgagcgc ccggccagcc gctatgtggc cgagttcctg ggcgaggcga
     3961 acatcttcgc cgatggccac ggctggcggc tggtgcggcc ggagaagatg accctctccg
     4021 cgacgctggt gaccggcgcc attgccggcg aggtggccga gatcgcctat ttcggagacc
     4081 gcatccgcta cgtggtgcgc gcgggccccg gccggcccct gcgggtcagt cgcgccaacc
     4141 tgggcccgcc cctgccgctg gcgatcggcg acaaagcctg ggtcacctac gcgccggacg
     4201 ctgccgtggc gctcgcctca tgaggcggcc atggctcgcc ggcgtggcgc cctacgcctg
     4261 gctcctcctg ttcttcgccc tgcccttcct gctggtggcg aaactgtcgc tctctcacac
     4321 cgtattggcg atgccgccct atgcgccgca gctcgacctc tccaaaggcc atgccggggt
     4381 tcgggccttc gtccatcaac tcagcttcga aacctatgcc cggctgacga ccgaccggct
     4441 ctatatcctg gcctatctct caagcctgag gttcgccggc gtcgccaccg cgatcctgct
     4501 ggcgatcggc taccccatcg cctacggcat gagccggttc ggcgccgcga cgcgccaggc
     4561 gctgctgatg gcggtgatcc tgccgttctg gatcagcttt ctgatccgca tctacgcctg
     4621 gatcgcgatc ctcaagcccg cgggcctgct gaaccaggcg ctggcgatcc tgcatatcgc
     4681 gcccttgagc ctgctgaaca ccgacgccgc ggtgatcatc ggcctggtct acgcctacct
     4741 gccgttcatg gtcctgccgc tctacgccgt cctgggacgg caggacgaac gcctgatcga
     4801 ggcggcgcag gacctgggct gcacgccggt tcaggccttc tggagggtca ccttcccgct
     4861 ctcccttccc ggcgtg
//
LOCUS       DATAJL010000111         4342 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14650,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000111 DATAJL010000000
VERSION     DATAJL010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14650"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1026
                     /locus_tag="VHN39_02065"
     CDS             <1..1026
                     /locus_tag="VHN39_02065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HEX2815150.1"
                     /translation="ALNDTALPLDGTFALHPQLTAVHAMAKAGEARIVPAVATPDRAR
                     SHFEAQDVLETGAAGVYSTTSGWLNRTVETLSAHRKIDALSVGPTAPLILRGKVQTAS
                     WSPGRSVDAEARLPTLLQDLYRNDPLLGPALARGLATETMAKDATAGLDGGQPAMMAG
                     PNGKGGGGAGAQQGRDAARTLGQSLAGFMREPGGPTVAAISLDGFDSHANQAGLLTQR
                     LAYLDAVLDGVHTGLGPEWKNTVVLVATEFGRTARANGTGGTDHGTGSTALVLGGGLK
                     PGGIVGDWPTLKQQALYENRDVAPTLDMRGLFKGVLADHMGVDRAALDSTIFPSSAAA
                     KPVLGLV"
     gene            complement(1023..2525)
                     /locus_tag="VHN39_02070"
     CDS             complement(1023..2525)
                     /locus_tag="VHN39_02070"
                     /inference="COORDINATES: protein motif:HMM:NF025134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative 2OG-Fe(II) oxygenase"
                     /protein_id="HEX2815151.1"
                     /translation="MSEAATIAEAEALMARGASAQALALTGELVAGSAPSHMALAVHA
                     GALKLVGRRDEALAFDLQAIDRFAASPIAWHNYAATLEDLGRAAEAVKACEQAFTLGM
                     DAPQTFAVYGRALRGAGNHERAEYAYKQSLIRAPAVTEVAAEYANYVWMLRGDVTAAD
                     AVLDTAFHAGAPPTPLLMAKSTLYDAAGQTERAAGLLEAASRKMPGDLFILLSATEFA
                     LRLERVDEAERYVRLAEAADATSRSVTQYSAIVDLARNRPGEALAKLRGVLETFPDDQ
                     SLWGWAATAARAAGDPLYGELCDYDAMVGVYDLATPEGWPSLESFLGDLGKALKSVHS
                     YQQHPTNQSLRHGSQTMHLLSGSNAPPIVAFFQAIDAPIREHMARLGQGADPLRRRNT
                     LDYRIQGAWSVRLQPNGFHRDHFHPEGWLSSAFYVETPDAAMESADKQGWIRFGQPPF
                     ITDPPLPPAHFVKPKPGRLVLFPSYMWHGTVPFTTDETRMTVAFDAVPKG"
     gene            complement(2522..3529)
                     /locus_tag="VHN39_02075"
     CDS             complement(2522..3529)
                     /locus_tag="VHN39_02075"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX2815152.1"
                     /translation="MKEVRTLFVDTGEDGVRLDRWFKRRWPHLNHIQIQKLARSGQIR
                     VDGGRAKPDTRLAAGAQIRVPPLPDAPPPRDKDSLDPREIAFAKSLVLYEDDEVLVLN
                     KPAGLAVQGGTKTSKHIDRLLSAWGEGLERPRLVHRLDRDTSGVLVLGKSPGATAKLA
                     SAFAKRRAQKTYWALVAGFPKPGEGLLDLPLAKKGVGDREMVQPADPADPKAEPAQTE
                     FVTISRAGDRVAWMALRPHTGRTHQLRAHMLAMGHPILGDPKYGTQASGELSGPLKLQ
                     LHARRLVIAHPSRGQLVLEAPMSPELRAGFQRFGFVEHEADPDPFRPAPKSAPARKSR
                     R"
     gene            complement(3526..3909)
                     /gene="crcB"
                     /locus_tag="VHN39_02080"
     CDS             complement(3526..3909)
                     /gene="crcB"
                     /locus_tag="VHN39_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEX2815153.1"
                     /translation="MLNLLLVAAGGAFGAVCRYLLGARLFRAFGPGLPYGTFAANLIG
                     GLLMGVLIGVLALRGGADQEKWRLLLGVGVLGGFTTFSSFSLEAYLMIERRTYGLAAA
                     YSLASVTLSIGALFLGLFVMRRLLA"
     gene            complement(3951..>4342)
                     /locus_tag="VHN39_02085"
     CDS             complement(3951..>4342)
                     /locus_tag="VHN39_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815154.1"
                     /translation="VGFSEMRIEPGRYRVTFQGGPGAPPAQVQDYALLRAANLALADG
                     YDWFRITDRITRQTGYSGSSLSVGIGGMSFGRRSAVGGSVATGVPLSGGPSLTTTLEV
                     MMGKGPKPADGDVYDARGVQHAIGPRV"
BASE COUNT          650 a         1508 c         1568 g          616 t
ORIGIN      
        1 gcgctcaacg acaccgccct gccgctcgac ggaaccttcg cgctgcaccc gcagctgacc
       61 gccgtccacg ccatggccaa ggccggcgag gcgcgcatcg tcccggccgt ggccaccccc
      121 gaccgggccc gctcacactt cgaagcgcag gacgtgctgg agaccggcgc ggccggcgtc
      181 tattcgacga cctccggctg gctcaaccgc acggtcgaaa cgctttcggc gcaccgcaag
      241 atcgatgcgc tttccgtcgg cccgacggcg cccctgatcc tgcgcggcaa ggtgcagacc
      301 gcctcctggt cgcccggccg ctcggtggac gccgaggccc gcctgccgac gctgctgcag
      361 gacctctacc gcaacgaccc gctgctgggg ccggccctgg cccggggcct ggccaccgag
      421 accatggcca aggacgccac ggcgggcctc gacggcggcc aaccggcgat gatggcgggc
      481 cctaatggca agggcggcgg cggcgcgggc gcgcaacagg gccgtgatgc ggccaggacg
      541 ctcggccagt cgctcgccgg cttcatgcgt gagccgggcg ggcccactgt ggccgccatt
      601 tcgctcgatg gcttcgacag ccacgccaat caggccggct tgctgaccca gcgcctggcc
      661 tacctcgacg ccgtgctgga cggggtgcac acgggcctgg ggcctgagtg gaagaacacc
      721 gtggtgctgg tcgccaccga gttcggccgc acggcgcggg ccaacgggac cggcggcacc
      781 gaccatggca cgggctcgac cgcactggtg ctcggcggcg ggctgaagcc cggcggcatc
      841 gtcggcgact ggccgacgct gaagcaacag gcgctctacg agaaccgcga cgtggccccc
      901 acgctggaca tgcgcggcct cttcaagggc gtcctggccg atcatatggg cgtcgaccgg
      961 gccgcgctcg acagcacgat cttcccgagc agcgccgcgg ccaagccggt cctgggcctg
     1021 gtctagccct tcggcacggc gtcgaaggcg accgtcatcc gggtttcgtc ggtcgtgaac
     1081 ggcaccgtgc cgtgccacat gtaggacggg aacagcacca gccggccggg cttcggcttg
     1141 acgaaatggg ccggcggcag cggcgggtcg gtgatgaacg gcggctggcc gaagcggatc
     1201 cagccctgtt tgtcggcgct ttccatggcc gcatccggcg tttcgacata gaaggccgag
     1261 gagagccaac cctccgggtg gaaatggtcg cggtgaaagc cattgggctg gaggcgcacc
     1321 gaccaggcgc cctggatgcg atagtccagc gtgtttcgcc ggcgcagcgg gtctgcgccc
     1381 tgtcccagcc tggccatgtg ctcgcggatc ggggcgtcga tggcctggaa aaaggccacg
     1441 atcggcgggg cgttggagcc ggacaggaga tgcatggtct ggctgccgtg acgcagcgac
     1501 tggtttgtcg gatgctgctg gtaagaatgt acgcttttca gtgccttgcc gagatctcct
     1561 aagaaagact ccaggctggg ccagccctcc ggagtcgcca ggtcgtagac tccgaccatc
     1621 gcgtcataat cgcagagttc gccgtagagc ggatcgcctg ccgcccgcgc cgcggtcgcc
     1681 gcccatcccc agagtgactg atcgtccgga aacgtctcca ggacgccgcg cagcttggcg
     1741 agcgcctcgc ccgggcggtt tcgggccaga tcgacgatgg cggagtactg ggtcacgctg
     1801 cgcgaggtcg cgtccgccgc ctccgcgagg cgcacatacc gttccgcctc gtccacgcgc
     1861 tccaggcgca aggcgaactc ggtagccgac agcaggatga acaggtcgcc cggcatcttg
     1921 cggctcgccg cctccaggag accggccgcg cgctctgtct ggcctgcggc gtcatagagc
     1981 gtcgacttgg ccatcagcag cggcgtcggc ggcgcgccgg cgtggaaggc cgtgtccagg
     2041 accgcgtcgg cagcggtgac gtcgccgcgc agcatccaga cgtagttggc gtattccgcg
     2101 gccacctcgg tgaccgcggg ggcgcggatc aggctctgtt tgtaggcata ctccgcgcgc
     2161 tcgtggttgc ccgcacccct gagtgcgcgg ccatagacgg cgaaggtctg gggcgcgtcc
     2221 atgccgaggg tgaaggcctg ctcacaggct ttcaccgcct cggccgcccg gccgagatcc
     2281 tccagggtgg cggcgtagtt gtgccaggcg atggggctcg cggcgaaacg gtcgatggcc
     2341 tgcaggtcga aggccagcgc ctcatcgcgg cgccccacca gtttcagggc gccggcatgg
     2401 acggcaagcg ccatgtggct gggcgcggag cctgccacca gctccccggt cagggcgagc
     2461 gcctgcgcgc tcgcgccccg cgccatcaga gcctcggcct cggcgatcgt ggcggcttcg
     2521 ctcatcggcg ggacttccgg gctggggcgc tcttgggggc gggcctgaag ggatcgggat
     2581 cggcctcgtg ctcgacgaaa ccgaagcgct gaaaaccggc gcgcagctcc gggctcatgg
     2641 gcgcctcgag gaccagctgg ccgcgcgagg ggtgggcgat caccagccgg cgggcgtgca
     2701 gttgcagctt caggggcccg gagagctcgc cggaggcctg ggtgccatac ttggggtcgc
     2761 ccaggatcgg gtggcccatg gccagcatgt gggcccgaag ctggtgggtg cgcccggtgt
     2821 gggggcgaag cgccatccat gcgacccggt caccggcccg cgagatggtc acgaattcgg
     2881 tctgggccgg ctcggccttg ggatcggcgg gatcggccgg ctgcaccatc tcgcggtcgc
     2941 cgacgccctt cttggcgagc ggcaggtcga gcaggccctc acccggcttg gggaacccgg
     3001 ccaccagcgc ccaataggtc ttctgcgccc ggcgtttggc gaaggcgctg gcgagcttgg
     3061 ccgtcgcgcc cggcgacttg cccagcacca ggacgcccga cgtgtcgcgg tcgagccggt
     3121 ggacgagccg gggccgctcc agcccctcgc cccaggccga gagcagccgg tcgatgtgct
     3181 tcgaggtctt ggtgccgccc tgcacggcca ggcccgccgg cttgttcagc accagaactt
     3241 cgtcgtcctc ataaagcacc agggacttgg cgaaggcgat ctcgcgcgga tcgaggctgt
     3301 ccttgtcgcg cggcggcggg gcgtcgggca gcggcggcac ccggatctgg gcgccggccg
     3361 ccagacgggt gtcaggcttg gcgcgcccgc catcgacgcg gatctggccc gagcgcgcca
     3421 gtttctggat ctggatgtgg ttcaggtgcg gccagcggcg cttgaaccag cggtccaggc
     3481 gcacgccatc ctcgccggtg tccacgaaga gggtccggac ctccttcacg ccaggagccg
     3541 gcgcatcacg aacaggccga ggaagagggc gccgatcgac agggtcacgg aggccaggct
     3601 gtaggccgcc gccaggccat aggtccgccg ctcgatcatc agataggctt ccagcgaaaa
     3661 ggacgaaaag gtggtgaagc cgcccagcac gccgacgccc agcagcagcc gccacttttc
     3721 ctggtccgcg ccgccgcgca gcgccagcac gccgataagg actcccatca gcaggccgcc
     3781 gatcaggttc gcggcgaagg tgccataagg gagaccgggt ccgaacgccc tgaacaggcg
     3841 cgcgcccagc agatagcggc agaccgcccc aaaggcgccg cccgccgcga caaggaggag
     3901 attcagcatc agctccctta tgcgacggcc cgccgccgcc gcaaaggccg tcagacgcgc
     3961 gggccgatgg cgtgctggac gccgcgggcg tcatagacat cgccgtcggc tggtttcggc
     4021 cccttgccca tcatgacctc gagcgtggtg gtcagcgacg ggccgccgct tagggggacg
     4081 ccggtcgcga cactgccgcc aacggcgctg cgccgaccga agctcatgcc gccgatcccc
     4141 acgctgaggc tggacccgga atagccggtc tggcgggtga tccggtcggt gatccggaac
     4201 cagtcgtagc cgtcggccag cgccagattg gcggcgcgca gcagggcgta gtcctgcacc
     4261 tgggccggcg gcgcgccggg gccgccttgg aaggtgacgc ggtagcggcc gggttcgatg
     4321 cgcatttctg aaaagcccac gg
//
LOCUS       DATAJL010000112         3109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_116765,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000112 DATAJL010000000
VERSION     DATAJL010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116765"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(17..394)
                     /locus_tag="VHN39_02090"
     CDS             complement(17..394)
                     /locus_tag="VHN39_02090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815155.1"
                     /translation="MNFISSARRIGVALAATLALAGPALAQAYDGDWAGTLQAGPQKL
                     RLALHVKTAAGATTAVLDSLDQDTTLDATAVKTEGGELSILFLQAGGELTAKLAPDGQ
                     SLVGTWKQGGSLPLTLTKQPATK"
     gene            521..877
                     /locus_tag="VHN39_02095"
     CDS             521..877
                     /locus_tag="VHN39_02095"
                     /inference="COORDINATES: protein motif:HMM:NF013868.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043856 - anti-sigma factor antagonist
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEX2815156.1"
                     /translation="MDWELERSAAHLVGRPRGRVDETTWEAFSDALTAAVREAAGAGG
                     VPLVIDLSGLDYMSSRGLRALTMAKREAGDTVKITLAAPNDRMREILAISRYDKLFDV
                     TDEAPPAVAASGGPDA"
     gene            877..1839
                     /locus_tag="VHN39_02100"
     CDS             877..1839
                     /locus_tag="VHN39_02100"
                     /inference="COORDINATES: protein motif:HMM:NF024118.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2815157.1"
                     /translation="MLVRFWGTRGSLPVAQKAGAIQAKIAQALLAADGRSFADEAEAA
                     AFAEANLPFSTYGAYGGATSCVEIEGADGAFIVCDMGSGLREFGIDAFRRCAAGHPAT
                     FHFFMSHMHWDHIMGFPFFGPAFDPGATIVIHSGHPDTEQALRRQQEEISFPVPFDWL
                     KATFRFVTHQMGETFDAAGLAVTLIRQHHSHDSYGYHFARDGRSVIYSTDSEHKLDNM
                     ESEAAFEAFFTGADLVICDTMYSLGDSVSLKADWGHSSNIVAVDLCHAAGVKQLALFH
                     HEPTYTDEDIARMHAETVRYEELVRADRPALDVICAYDGLEIAI"
     gene            1845..>3109
                     /locus_tag="VHN39_02105"
     CDS             1845..>3109
                     /locus_tag="VHN39_02105"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE2 domain-containing protein"
                     /protein_id="HEX2815158.1"
                     /translation="MNELDPSARLKVRLGGIVAAVAVALAVLMAGDAIPTPLFDLFQR
                     IAPQSTASPKVQVVLIDAPSLAAVGGWPWSRYTMARLTEAIAGRGAMAIGYDFLFPEA
                     DRLTPTLFAGLYPELPPATAEEIRKLPSMDAVFARVIGRAPVVLARAGVEKGSYDALG
                     AAAPLPPEAQFAGPESYRIAAYPEAVANLPILDGAALGHGLVNGAKDSDGVSRRVPLV
                     ARAAGALTPGFALELVRIAEGEEKVTLEGDEDRLKAVRLGKHRLPVDARGQMALRFRG
                     LAGPATTSAVDLLRSGVPAHAFAGKIVLVGLTAAGTSDVVTTPRETETFGVLVQAEAA
                     NDIASGVALSRPDWAVPLEWGLGLLVAAAAFLFTPRLGLTAIVTGALGLAAAAVGGSY
                     AAFVAGSLVDPAPMLAPGIATATTMIALL"
BASE COUNT          424 a         1070 c         1096 g          519 t
ORIGIN      
        1 atgagcggac aggtggttac ttcgtcgccg gctgtttcgt cagggtgagc ggcaggctgc
       61 cgccttgttt ccaggtcccg accagcgatt gaccgtcggg ggccagcttg gcggtcagtt
      121 ctccgcccgc ctgaaggaac aggatgctga gctcgccgcc ctcggtcttg acggcggtgg
      181 cgtccagggt ggtgtcctgg tcgaggctgt ccaggaccgc cgtcgtcgcg cccgccgccg
      241 tcttcacgtg gagcgccagc cgtaatttct gggggccggc ctgcagcgtg ccggcccagt
      301 cgccgtcgta ggcctgggcc agggcgggtc cggccagggc cagggtcgcg gcgagtgcga
      361 cgccgatgcg acgtgcgctt gagatgaagt tcatgtgacg cccttcccga tatcgatgac
      421 cgaagagttg gggagtccgg cgccgggcgc aaggcgaagg ttcgccgggc gtgtcgtcgc
      481 taacctaact gtggcagcat cttccggatc gggaggcggc atggattggg agcttgaacg
      541 gtcagccgcg cacctcgtcg gtcgaccgcg cggccgggtc gacgagacga cctgggaggc
      601 gttttcggac gccctgacgg ccgctgtccg cgaagccgcc ggcgccggcg gcgtgccgct
      661 ggtcatcgac ctgtcgggtc tcgattacat gtcctcgcgg ggcctcaggg cgctgaccat
      721 ggccaagcgg gaggccggcg acacggtgaa gatcacgctc gccgcgccca acgatcgcat
      781 gcgcgaaatc ctggcgatca gccgctacga caagctgttc gacgtgaccg acgaggcgcc
      841 gcctgccgtg gcggcttctg ggggacctga cgcctgatgc tggtccgttt ttggggcacg
      901 cgcggctcgc ttccggtggc gcagaaggcc ggcgccatcc aggccaagat cgcccaggcg
      961 ctgctggcgg ccgatggtcg gagcttcgcc gacgaggccg aggccgcggc cttcgccgag
     1021 gccaacctgc cgttttccac ctacggcgcc tatggcggcg ccacgtcctg cgtggagatc
     1081 gagggggcgg acggggcctt catcgtctgc gacatgggtt cgggactgcg cgaattcggc
     1141 atcgacgcgt tccggcgctg cgccgcgggc catcccgcga ccttccactt cttcatgtcc
     1201 cacatgcatt gggaccacat catgggcttc ccgttcttcg ggccagcgtt cgatccgggc
     1261 gcgaccatcg tcatccactc cggccatccg gacaccgaac aggcgctgcg ccgccagcag
     1321 gaggagattt cgttcccggt tcccttcgac tggttgaagg cgacgttccg gttcgtcacc
     1381 catcagatgg gcgagacctt cgacgcggcg ggcctggcgg tgacgctgat ccgccagcac
     1441 cacagccacg attcctacgg ctatcacttc gcccgcgacg gccgctcggt gatctattcg
     1501 acggacagtg agcacaagct cgacaacatg gaatccgagg cggccttcga agccttcttc
     1561 accggcgccg acctggtgat ctgcgacacc atgtattccc tgggcgacag tgtcagcctg
     1621 aaggcggact gggggcattc ctcgaacatc gtggccgtcg acctctgcca cgcggccggc
     1681 gtaaaacagc tggcgctgtt tcaccacgag ccgacctaca ccgacgaaga catcgcgcgc
     1741 atgcacgccg agaccgtccg ctatgaggag ctggtgcgcg ccgaccggcc ggccctggac
     1801 gtgatctgcg cctacgacgg gctcgagatc gcgatctaag ggccttgaac gagctcgatc
     1861 ccagcgcccg gctcaaggtc cgcctcggcg ggatcgtcgc cgccgtggcg gtggctctgg
     1921 cggtgcttat ggcaggcgat gcgatcccca cgccgctctt cgacctcttc caacgcatcg
     1981 ccccgcagtc tacggcctcg cccaaggtcc aggtggtgct gatcgatgcg cccagcctgg
     2041 cggcggtcgg cggttggccg tggtcgcgct acaccatggc ccggctgacc gaggcgatcg
     2101 ccgggcgagg ggccatggcc atcggctacg acttcctgtt ccctgaggcc gaccggctga
     2161 cgccaaccct cttcgccggc ctctatcccg agctgccgcc cgccacggcc gaggagatcc
     2221 gcaaactgcc ttcgatggac gccgtcttcg cccgggtcat cggccgcgcg ccggtggtcc
     2281 tggcccgcgc cggggtggag aagggctcct acgacgcgct cggggccgcc gcgcccttgc
     2341 cgcccgaggc gcagtttgca gggccggagt cgtatcggat cgccgcctat ccggaggcgg
     2401 tggccaacct gcctatcctc gacggcgcgg ccctgggcca cggactggtc aacggcgcta
     2461 aggactcgga tggcgtcagc cgtagggtgc cgctggtggc ccgcgcggcc ggtgcgctca
     2521 cgccaggctt cgccctggag ttggtgcgca tcgccgaggg cgaggaaaag gtgacgctgg
     2581 agggcgacga ggatcgcctg aaggccgtgc ggctcggcaa gcaccgacta ccggtggacg
     2641 cccgggggca gatggcgctc cggttccggg gtctcgcggg gccggcgacc acctcggctg
     2701 tggacctcct gcgcagcggc gttccggccc atgccttcgc cggcaagatc gtgctggtgg
     2761 gcctgacggc cgccggcacc tcggacgtgg tcaccacgcc gcgcgagacc gagaccttcg
     2821 gggtcctggt gcaggccgag gccgccaacg acatcgcgtc tggcgtggcg ctcagccggc
     2881 cggactgggc ggttccgctg gaatggggcc tgggcctgct ggtggccgcc gccgccttcc
     2941 tgtttacgcc gcgccttgga ctgacggcga tcgtcaccgg cgcgcttggc ctggccgcgg
     3001 cggcggtcgg cggcagctac gcggcgttcg tggccggctc gctggtcgat cccgcgccga
     3061 tgctcgcccc ggggattgcg acggccacca ccatgatcgc cctgctgtt
//
LOCUS       DATAJL010000113         1591 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40482,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000113 DATAJL010000000
VERSION     DATAJL010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40482"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..387
                     /locus_tag="VHN39_02110"
     CDS             <1..387
                     /locus_tag="VHN39_02110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB
                     domain-containing protein"
                     /protein_id="HEX2815159.1"
                     /translation="TPSLPNDEVLSQVLFGRTASQLSPLEAAQLASALSGLAGGGGFD
                     VVGNLRTFAGLDRLALGGGDAASGAVSISGGKYLTENVYLELTGGGRDGGAAQVEWRV
                     KRSLSIVSRVGAQGAGRLAIRWRRDY"
     gene            complement(381..1244)
                     /gene="phhA"
                     /locus_tag="VHN39_02115"
     CDS             complement(381..1244)
                     /gene="phhA"
                     /locus_tag="VHN39_02115"
                     /EC_number="1.14.16.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004505 - phenylalanine 4-monooxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine 4-monooxygenase"
                     /protein_id="HEX2815160.1"
                     /translation="MSADGFTNGPPPGARADWTIDQRWEGYSPAEHQVWITLYERQTA
                     LLEGRACDPFLKGLEALDLHRSGIPDFARINTELNRLTGWSVVAVPGLVPDEVFFDHL
                     ANRRFPAGQFIRKPDELDYLQEPDIFHDVFGHVPMLTDPVFADYMQAYGRGGQRALQF
                     GQLANLARLYWYTVEFGLLQTPQGARIFGAGIVSSRTESIFALDDPSPNRLGFDLERV
                     MRTPYRIDDFQQVYFVVPSLQALLDATLQDFAPIYDRLSRASDIAIASIQPTDLVVTR
                     GTQAYALSRAQ"
BASE COUNT          239 a          521 c          586 g          245 t
ORIGIN      
        1 acgccgagcc tgcccaacga cgaggtgctg tcccaggtgc tgttcggccg caccgcatcg
       61 cagctgtcgc cgctggaggc cgcgcagctg gcgtcggcgc tgtctggcct ggccggcggc
      121 ggcgggttcg acgtggtggg caacctcagg accttcgcgg gcctcgaccg cctggcgctg
      181 ggcggcggcg acgcggcctc cggcgcggtc agcatctccg gcggcaagta tctgaccgag
      241 aacgtctatc tggagctcac cggcggcggc cgcgacggcg gggcggcgca ggtggagtgg
      301 cgggtgaagc ggagcctgtc gatcgtttcc cgggtcgggg cccagggcgc cgggcgcctg
      361 gcgatccgct ggcggcgcga ctactgagct cggctgagcg cgtaggcctg agtgcctctc
      421 gtgacgacaa gatccgtggg ctgtatcgac gcgatcgcaa tatcgctcgc gcggctcagc
      481 cgatcgtaga tcggggcgaa gtcctgcagg gtggcgtcca gcagggcctg cagcgagggc
      541 accacgaaat agacctgctg gaagtcgtcg atccggtagg gcgtgcgcat cacccgctcc
      601 aggtcgaagc ccaggcggtt cggcgaggga tcgtccagcg cgaagatcga ttccgtgcgg
      661 ctggagacga tgccggcccc gaagatccgc gcgccctgcg gcgtctgcag gagcccgaac
      721 tccaccgtgt accagtaaag gcgcgccaga ttggcgagct ggccgaactg cagggcgcgc
      781 tgaccgccgc gtccataggc ctgcatgtag tcggcgaaca ccgggtcggt gagcatcggc
      841 acatggccga agacgtcgtg gaaaatgtcc ggctcttgca ggtagtcgag ttcgtcgggc
      901 ttgcggatga actgccccgc cgggaagcgg cggttggcca ggtggtcgaa gaacacctcg
      961 tcggggacca ggcccggaac ggccaccacg ctccagccgg tcagacggtt cagctcggtg
     1021 ttgatccgcg cgaagtccgg aatgccggag cggtgcaggt cgagcgcttc caggcccttc
     1081 aggaacggat cgcaggcgcg gccttcaagc agcgccgtct ggcgctcgta aagcgtgatc
     1141 cagacctgat gctcggcggg cgaatagccc tcccagcgct ggtcgatggt ccagtcggcc
     1201 ctggccccag ggggcgggcc gttcgtaaag ccgtcggcgc tcatgctgcg gacaatggcc
     1261 tgctttgcgt ggaagttccg ttctgagatg gccagactgg gcgggcgccg cgggaggatc
     1321 gtccaacgag cggcaagccc cgcgcataaa tcgcccaccg gcgacctgcg ggccgcctcg
     1381 caattgccac cgtgcgacct tccagactaa gcctcggcgc gagagggtcc gattgcctag
     1441 actgaggttt ctttgggcgg gcctggccgc ggcggcgtcg atcgccggcg gcgtggccca
     1501 cgcacagccg gccgccctcg ggctggtcgc cgatcccgcc ctgctgcgct gggatccggc
     1561 gatccgctat ggccagctgc cgaacggcct g
//
LOCUS       DATAJL010000114         2214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_116771,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000114 DATAJL010000000
VERSION     DATAJL010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116771"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2214
                     /locus_tag="VHN39_02120"
     CDS             <1..>2214
                     /locus_tag="VHN39_02120"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815161.1"
                     /translation="IEELVVTAEKRSQSLQDVPVAISAYTSEKRDLLGINTVQDMTNF
                     TPGLAYSSQLDRISLRGVGRLTNVQSADPGVATYSDGVYTSSTVEAGKTPIFTDRVEV
                     LRGPQGTLYGRNSIGGAINVISKRPTEELYAEVRATVANYGRTLLEAAVSGPLAPDLQ
                     FRLAGNWEKQRDGYFKNIVPGMPSEGNVIDQYYIEGQLQAKFGEHLDGWVKMAVSGWN
                     NGGGGPGARATYTTGPYNTTEFAPGALFVNPGYACSGKVSNVVNLSPSGCVNPANSDP
                     RKFAADTANSVSLDETYIFSTQWTYHFDGADLKYIGGYDNYHYTLIADQDGTAIQGFT
                     LPVAPFFAAGGVALGAKITPCAVVPGCTGVNVQPRYASTYQENKHWVSHELNLSSSGD
                     GALQWLAGLYYYKEGYEQPVFTTLFDQAQLGSAGIAPAVPALTGAVSADTLLRPYDDR
                     PQLHDESYAGFGQVDWKFASEWKATLGLRYSHDHKFGSEDVRLVCFAVTSCLGGATPE
                     GLGSLAPPVDVTAAVVNLATLPQGVVAGGLNGVTFLPGGFAHRSYDASFSAVTGTAGV
                     QWDPDRNTMMYARYSRGYKAGGFNVGISTTEGASPSTGPEHANNYEVGLKKDMFDHTL
                     QTNLAIFYLDYQDFQAPVTVPAVSGGVAQSQGVFLNVPKAVSYGVELETIWAPIDHLQ
                     ILLSYAYDDAHITQLSGVIDPADPTGIQPGARPIGALTSCASTPAGICDIYTGNL"
BASE COUNT          386 a          803 c          685 g          340 t
ORIGIN      
        1 cgatcgagga actggtggtc accgccgaga agcgcagcca gagcctgcag gacgtgccgg
       61 tcgctatctc ggcctatacg tccgaaaagc gcgaccttct gggcatcaac accgtccagg
      121 acatgaccaa cttcacgccg ggcctggcct attccagcca gctcgaccgc atcagcctgc
      181 gcggcgtcgg ccgcctgacc aatgtgcagt ccgccgaccc gggcgtggcg acctactcgg
      241 acggcgtcta cacctcctcg accgtggaag ccggcaagac gccgatcttc accgaccggg
      301 tcgaggttct gcgtggtccc cagggcacgc tctacggccg caattccatc ggcggtgcga
      361 tcaacgtgat ctccaagcgc ccgaccgaag agctgtacgc tgaagtccgc gccaccgtcg
      421 ccaactatgg ccgcaccctg ctcgaggccg cggtctccgg cccgctggcg cctgacctgc
      481 agttccgcct ggccggcaac tgggaaaagc agcgcgacgg ctacttcaag aacatcgtcc
      541 cgggcatgcc cagcgaaggc aatgtcatcg accagtacta catcgagggc cagctccagg
      601 cgaagttcgg cgagcacctg gacggctggg ttaagatggc cgtatccggc tggaacaacg
      661 gcggcggcgg accgggcgcg cgggcgacct atacgaccgg cccctacaac acgaccgagt
      721 tcgcccccgg cgccctcttc gtgaaccctg gctacgcctg cagcggcaag gtctccaatg
      781 tcgtgaacct gtcgccgtca ggctgcgtga acccggccaa cagcgatccg cgcaagttcg
      841 ccgccgacac cgccaactcc gtgtcgctgg acgagacata cattttctcg acccagtgga
      901 cctaccactt cgacggcgcc gacctgaagt acatcggcgg ctacgacaac taccactaca
      961 ccctgatcgc cgatcaggac gggaccgcga tccagggctt caccttgccg gtggcgccgt
     1021 tcttcgcggc cggcggcgtg gcgctgggcg ccaagatcac gccctgcgcg gttgttccgg
     1081 gctgcacggg cgtcaacgtc cagccgcgct acgcctcgac ctatcaggag aacaagcact
     1141 gggtcagcca cgagctgaac ctgtcctcca gcggcgatgg cgccctgcaa tggctggccg
     1201 gcctctacta ctacaaggaa ggctacgagc agccggtctt cacgaccctg ttcgaccagg
     1261 cgcagctggg ctcggccggc atcgccccgg ccgtgccggc cctgaccggc gcggtctcgg
     1321 ccgacaccct gctgcggccc tacgacgacc gtccgcagct gcacgacgaa tcctacgcgg
     1381 gcttcggcca ggtcgactgg aagttcgcgt cggagtggaa ggccacgcta ggcctgcgct
     1441 acagccacga ccacaagttc ggctccgagg acgtgcgcct ggtctgtttc gcggtgacgt
     1501 cctgcctggg cggcgccacg ccggaaggcc tgggctcact ggccccgccg gtcgacgtga
     1561 ccgccgcggt ggtcaacctg gcgaccctgc cgcaaggcgt ggtggccggc ggcctcaacg
     1621 gcgtgacctt cctgcccggc ggcttcgccc accgcagcta cgacgccagc ttctcggcgg
     1681 tgaccggcac cgccggcgtg cagtgggatc ctgaccggaa caccatgatg tatgcccgct
     1741 acagccgcgg ctataaggcc ggcggcttca acgtcgggat ctcgacgacc gagggtgctt
     1801 cgccctcgac cggtccggaa cacgccaaca actacgaagt cggcctgaag aaggacatgt
     1861 tcgaccacac tctccagacc aacctggcga tcttctatct cgactatcag gacttccagg
     1921 cgccggtgac ggtcccggcc gtcagtggcg gggtcgccca gtcgcagggc gtcttcctga
     1981 acgtgcccaa ggcggtcagc tacggggtgg agctggagac catctgggcg ccgatcgacc
     2041 acctgcagat cctgctgagc tacgcctatg acgacgccca catcacccag ctctcgggcg
     2101 tcatcgatcc ggccgacccg accggcattc agccgggcgc acggccgatc ggcgccctga
     2161 ccagctgcgc gtccaccccg gccggcatct gcgacattta cacgggcaac ctgg
//
LOCUS       DATAJL010000115         4661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_53179,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000115 DATAJL010000000
VERSION     DATAJL010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4661
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53179"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..247)
                     /locus_tag="VHN39_02125"
     CDS             complement(<1..247)
                     /locus_tag="VHN39_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815162.1"
                     /translation="MKLGSAIAAVALAGLSLAAGAAKADLFDFTFVSTISDANTPGIV
                     DGDQVTVHLFADNGGSSDLSQVWNYADLQGFTLAAGTY"
     gene            complement(452..1069)
                     /locus_tag="VHN39_02130"
     CDS             complement(452..1069)
                     /locus_tag="VHN39_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HEX2815163.1"
                     /translation="MTIALPPAPEFGAPIALSPAPEVLAFLATRRSTSAVTLTEPAPS
                     ASELDILLRLATRVPDHGKLTPWRLIVLDGEDKARFAGKLEALALSRGDQKAAAKLAK
                     LKIPPLCVAVISSPRPDAMPQWEQILSAGAVGATLLYATLAMGYGANWITDWYAYDPE
                     ASAILGLTGDEKVAGFILIGTPREPPLERERPEVSALVSRWRDQD"
     gene            1252..1866
                     /locus_tag="VHN39_02135"
     CDS             1252..1866
                     /locus_tag="VHN39_02135"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX2815164.1"
                     /translation="MTDKPAWLRAHGEPWKAGTERVAFESGWITVTEQTATAPTGKPA
                     PYGLVRFKNLAVAVLPIHEDGTIVLVGQHRFPLGDYTWELPEGGSPLAEDPLEGAKRE
                     LAEETGLAAAEWREVMRTQLSNSVTDERMIGYLALGLSQAQAGHDADDTEAIALVRVP
                     FREALDAAMAGYLPDMLTVAMLLRGYHMAREGALPGDLARAMLG"
     gene            1898..2731
                     /gene="cysE"
                     /locus_tag="VHN39_02140"
     CDS             1898..2731
                     /gene="cysE"
                     /locus_tag="VHN39_02140"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEX2815165.1"
                     /translation="MSQQRLEVVDLDTAPPVWASLRNEAEAAAQKESALASLLAAVIL
                     NHRSLGGALSYQLARKLGDQELRAMSIREIAEEAYAANPTLVEMAEADLKAVFERDPA
                     CKGYVQPFLFFKGFLALQTQRVANWLWTEGRETLALYLQSRMSELFQVDIHPATKIGR
                     GVFIDHGTGIVIGETAVIGDDVSMLQGVTLGGTGAERGDRHPKIGKGVLLGAGAKVLG
                     NISIGDYAKIASGSVVLKEVPAGCTAAGVPARLVNCPTCEEPARSMDHTLADIVYDYV
                     I"
     gene            2823..3029
                     /locus_tag="VHN39_02145"
     CDS             2823..3029
                     /locus_tag="VHN39_02145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3126 family protein"
                     /protein_id="HEX2815166.1"
                     /translation="MDERMIRKLEGHLRGTFANARIVLTPRPKQKDSAEVYVGEEFVG
                     VVFEDEDGDGSFMFEMAILAEDLP"
     gene            3056..3838
                     /locus_tag="VHN39_02150"
     CDS             3056..3838
                     /locus_tag="VHN39_02150"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEX2815167.1"
                     /translation="MRFVDLSIAIENNEYSDPPGFSPKVAYTDHKAGARQLAASFPGL
                     KPEDLPDSEGWAVETIQLSTHNGTHMDAPWHFHSTQDAALGEKRRAMTIDELPLDWCL
                     RPGVKLDFRKFHDGYVATAADVEAELQRIGHMLAPFDIVLVNTSAGAVFGRPEYVATG
                     CGMGREATLYLAERGVKIVGTDAWSWDAPFVHTNKRFQETGDASIIWEGHKAGLEIGY
                     FQIEKLHDLERLPPDGFTVSCFPVKIKDAGAGWIRAVAIFED"
     gene            complement(3954..4502)
                     /locus_tag="VHN39_02155"
     CDS             complement(3954..4502)
                     /locus_tag="VHN39_02155"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0018142 - protein-DNA covalent
                     cross-linking [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HEX2815168.1"
                     /translation="MCNEYRLRLPLDSIADAFSQLNIPIHWAGGAPNLEPRDSIRPTD
                     PAPMLVGSPEGAELKQLRWGFAQPKGGPLINFRSDGRRFPNGRCLIPADGFYEFTGDK
                     APKSKWLFTAADNELFCIAGFVRDERFTMLTMEPGPDIAPYHNRQIVILPRAQWAEWL
                     GPSPEMRIPALPAGSLKVEQIR"
BASE COUNT          774 a         1472 c         1665 g          750 t
ORIGIN      
        1 agtatgtccc ggcggccagc gtgaaaccct ggagatcggc gtagttccag acctggctga
       61 ggtccgacga gccgccgttg tcggcgaaca ggtgaaccgt gacctgatcg ccgtcgacga
      121 tgccgggcgt gttcgcgtcg ctgatcgtgg agacgaaggt gaaatcgaac aggtccgcct
      181 tggcagcacc ggcggcgagc gacaggccgg ccagcgcaac ggcggcaatt gctgatccga
      241 gtttcatcgc gagaacccct ttcgttccgg tggcgccggc aagcgcacac ccaagggaca
      301 tgggacatca gtgttcatcg aacgacaact gcattctccc ctcaggcgag ttgcgccttg
      361 gcgcggcggg aggttaaggg cggacttggc ccttagtatt cagggcgttc caccagtgtc
      421 gccgccgacg cgcggatctt gcgcccccgc tctaatcctg atcccgccag cggctcacga
      481 gggccgagac ctcgggccgc tcgcgctcca gcggcggctc gcgcggcgtg ccgatgagga
      541 tgaatcccgc caccttctcg tcgcccgtca ggcccaggat ggcgctcgcc tcggggtcgt
      601 aggcgtacca gtcggtgatc cagttggcgc catagcccat ggcgagcgtc gcgtagagca
      661 gggtggcgcc gaccgctccg gcggagagga tctgctccca ttgcggcata gcgtcgggcc
      721 tgggcgatga gatcaccgcg acgcacagcg gggggatctt cagcttggcg agcttggccg
      781 cggctttctg gtcgcctcgc gacagggcga gcgcctcgag tttgcccgcg aaacgggcct
      841 tgtcctcgcc gtccaggacg atgaggcgcc agggcgtgag cttgccgtgg tcagggaccc
      901 gcgtggccag ccgcaagagg atatcgagct cgctggcgct gggcgcgggt tccgtgaggg
      961 ttacggccga ggtcgagcgg cgggtggcca ggaaggccag cacctcgggc gccggcgaaa
     1021 gcgcgatggg cgcgccgaat tccggggcgg gcggcagggc gatggtcacg ggcgcctcat
     1081 ggatgtttag gaagcgatag ggtggctcct ttatgggtgc cccgcacgta ccgcaaggcg
     1141 agcctggagc gctcctgatt tcgattgcat cgaaaccgcg ctccaggatt tttgctttgt
     1201 cgctcttcct gatcggctgg cggaagacgc cagccgggaa acgcttggcc gatgaccgat
     1261 aaacccgcct ggctcagagc ccacggcgag ccctggaagg ccgggaccga gcgcgtcgcc
     1321 ttcgagagcg gctggatcac cgtgaccgag cagacagcga ccgcgccgac cggcaagccg
     1381 gcgccctacg gcctggtgcg cttcaagaac ctggcggtgg cggtcctgcc gatccacgag
     1441 gacgggacca tcgttctggt gggacagcat cggtttccac tcggcgacta cacctgggag
     1501 ctgcccgagg gcgggtcgcc gctggctgag gatcccctgg agggcgccaa acgcgaactg
     1561 gccgaagaga ccgggctcgc ggcggcggaa tggcgcgagg tgatgcgcac gcagctttcc
     1621 aactcggtga ccgacgagcg gatgatcggc tacctggcgc tcgggctctc gcaggcgcag
     1681 gccgggcatg acgccgacga caccgaggcg atcgccctgg ttcgggtccc gttccgcgag
     1741 gcgctggacg ccgcgatggc cggatatctt cctgacatgc tgacggtggc gatgttgctt
     1801 cggggctacc atatggcccg tgagggagct ttgccgggcg acttggcccg cgccatgcta
     1861 ggatagggga gcacgccgga tgaggcggga ggaccagatg agccagcaac gcctggaagt
     1921 cgtcgacctg gataccgcgc cgccggtatg ggcgtcgttg cgcaatgagg ccgaggccgc
     1981 ggcgcagaag gagtccgcgc tggcgagcct gctggccgcc gtgatcctga accacaggag
     2041 ccttggcggg gcgctcagct atcagctggc ccgcaagctc ggggaccagg agctgcgcgc
     2101 catgagcatc cgcgagatcg ccgaggaggc ctatgcggcc aatccgacgc tggtggaaat
     2161 ggccgaggcc gacctgaagg cggtgttcga gcgcgacccg gcctgcaagg gctatgtcca
     2221 gccgttcctg ttcttcaagg gcttcctggc gctgcagacc cagcgggtcg ccaactggct
     2281 gtggaccgag ggccgcgaga cgctggcgct ctatctgcag agccgaatga gcgaactctt
     2341 ccaggtggac atccatcccg cgacgaagat cggccgcggc gtgttcatcg accacggcac
     2401 cggcatcgtc atcggcgaga ccgcggtgat cggcgacgac gtctccatgc tgcagggtgt
     2461 caccctgggc ggcacgggcg ccgagcgcgg cgaccgccac ccgaagatcg gcaagggcgt
     2521 attgctgggc gcaggcgcca aggtgctggg caacatctcg atcggcgact acgcgaagat
     2581 cgcgtcgggc tcggtggtgc tgaaggaagt gccggccggc tgcacggccg ccggcgtgcc
     2641 cgccaggctg gtgaactgcc cgacctgcga ggagccggcg cggagcatgg accacacgct
     2701 ggccgacatc gtctacgact acgtgatctg acacgagatc tggggttttc gcctcttctt
     2761 ggttttcgtg ggggttgtga acggctaggt tcccgccgcc tttagactgc aggagcgttg
     2821 gcgtggacga acgaatgatc cgaaagctcg aagggcactt gcggggcacc ttcgcgaacg
     2881 cccgcatcgt gctgacgcca aggccgaagc agaaggattc cgccgaggtc tatgtcggcg
     2941 aggagttcgt gggcgtggtc ttcgaggacg aggacggcga cggctcgttc atgttcgaga
     3001 tggcgatcct ggcggaagac ctgccgtagg gttgaatggc gggagggcag accaaatgcg
     3061 ttttgtggac ctgtcgatcg ccattgagaa caacgagtac tccgacccgc cgggcttttc
     3121 gccgaaagtc gcctacaccg accacaaggc cggcgcgcgg cagctggctg cgtcgttccc
     3181 ggggctgaag cccgaggacc tgccggacag cgaagggtgg gcggtggaga ccatccagct
     3241 ctccacccac aacggcaccc atatggatgc gccgtggcat ttccactcca cgcaggacgc
     3301 cgccctcggc gaaaagcgcc gcgccatgac catcgacgaa ctgccattgg actggtgtct
     3361 gagaccgggc gtcaagctcg acttccgcaa gttccacgac ggctatgtgg ccaccgccgc
     3421 ggacgtcgag gccgaactcc agcgcatcgg ccacatgctc gcgccgtttg acatcgtcct
     3481 ggtcaacaca agcgccggcg cggtctttgg ccggcccgaa tatgtcgcca ccggctgcgg
     3541 catgggccgt gaggcgaccc tctacctggc cgagcgtggc gtgaagatcg tcggcaccga
     3601 cgcgtggtcc tgggatgcgc ccttcgtcca caccaacaag cggttccagg agacggggga
     3661 cgcatcgatc atctgggagg gtcacaaggc gggacttgag atcggctact tccagatcga
     3721 aaagctgcac gatctggagc gcctgccgcc cgacggcttt accgtctcct gcttcccggt
     3781 gaagatcaaa gacgctggcg ccggctggat ccgcgccgtg gcgatcttcg aagattgacg
     3841 cacccgccgc gagcggccgg acatgcccga gaggggcccc tccgaacttc agctaagggt
     3901 cgcaagcgga cctctccctt gaatccgcgc cgcggcgctg atcgcggcgg ggtctagcgg
     3961 atctgctcga ccttcaggct gccagcgggc agggccggaa tgcgcatttc cggcgacggc
     4021 cccagccact cagcccattg agcgcggggc aggatcacga tctggcggtt gtggtagggc
     4081 gcgatgtcgg ggcccggctc catggtcagc atggtgaaac gctcgtcgcg cacgaagccc
     4141 gcgatgcaga agagttcgtt gtcagcagcc gtgaacagcc acttggactt cggagctttg
     4201 tcgcccgtga actcgtagaa accgtcggcc gggatcaggc agcggccgtt ggggaagcgg
     4261 cgcccgtcgg agcggaagtt gatcagcggg ccgcccttgg gctgggcgaa gccccagcgc
     4321 agttgcttca gctcggcgcc ctcaggcgag ccgaccagca tgggcgccgg atcggtcggt
     4381 cggatcgagt cgcgcggctc gaggttcggc gcgccgccgg cccaatggat cgggatgttc
     4441 agctggctga acgcgtcggc gatgctgtcg aggggcagcc tgaggcgata ctcgttgcac
     4501 atggtttgtc agattggacg ccggacgcgg cggcgtccat ggctgcgcgg gcggcggccg
     4561 cggcgcgttc caggtcgcca agcgccaggc cgcagcgtgc gtcgttggcg gcgaggcccc
     4621 gggcgatgca ggccctgacg cgctcgaccg cgcgttcggc t
//
LOCUS       DATAJL010000116         1997 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_53199,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000116 DATAJL010000000
VERSION     DATAJL010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53199"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(130..1428)
                     /locus_tag="VHN39_02160"
     CDS             complement(130..1428)
                     /locus_tag="VHN39_02160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006274098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815169.1"
                     /translation="MFAQALSGLLGRRGIHYAWVIAAVTFFAMLTTSAALGLPGAMLK
                     PLSKEFGWTTDQLSSVFAVRFALFGLLGPFAAVFIGRYGLRRVMMAAAAFVATAMVLA
                     TQITQLWQLFILWGLVLGCGTGLTALVLGAMVANRWFTARRGLVVGLLAASTATGQLI
                     FLPVAAWLIENVGWRFAVIPVFVACVIVAILVFLFMQDSPKVMGMRAYGETGEDATPA
                     AVGPALPHSFWGPFTVLAEAVHNRTFWILAGTFFICGLSTNGLVQTHFISLCGDNGLT
                     AVPAASVLSMMGAFDLVGTTLSGYLSDRYDNRKLLFWYYGLRGLSLFWLPFSTFTLYG
                     LSMFALFYGLDWIATIPPTVKLTAQAFGKERAGLVFGWVFAAHQLGAAVAAYGAGLTR
                     TLLMTYNPALFAAGAACLVAAAGVLLIRAAGRPAVAAVAT"
     gene            1524..1916
                     /locus_tag="VHN39_02165"
     CDS             1524..1916
                     /locus_tag="VHN39_02165"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX2815170.1"
                     /translation="MPRGCSSQKVRRLSRRISQHFDRIVASSGLKTTQYSLLSHVVQL
                     GPIRPGELAQAMDLDASTLTRNLHPLAAAGWVVVGPGENERSRMVSATDAGRVKRAEA
                     QRTWKRAQLAFNERVGAEAVGRLHAAVD"
BASE COUNT          368 a          662 c          685 g          282 t
ORIGIN      
        1 ccccagtcgt ggctggtggc gtcgatctct ctctgtcggg cctgccacgc cggcaattga
       61 tcgacgaccg cgtctttcgt gttctcttcc atcgcgttgt gtcctctcga agattggcgc
      121 tggttgctgc tatgtcgcga cggccgcgac cgcaggacgg cccgcggcac ggatcaacag
      181 cactccggca gcggccacca ggcacgccgc gcccgccgcg aacagtgccg ggttgtaagt
      241 catgagcagc gtgcgcgtca gccccgcacc gtaagccgcc acggccgcgc cgagctgatg
      301 cgctgcgaag acccagccga acacgagtcc ggcccgctct ttgccgaagg cctgggcggt
      361 cagcttcacg gtcggcggga tggtggcgat ccagtccagc ccgtaaaaca gcgcgaacat
      421 cgacaggccg tacagcgtaa aggtcgagaa cggcagccag aacaaggaca gtccgcgcag
      481 gccgtagtac cagaacagca gcttgcggtt gtcgtagcgg tccgacagat agcccgacaa
      541 ggtcgtgccg accagatcga aggcgcccat catcgacagc accgaggcgg ctggcacggc
      601 ggtcaggccg ttgtcgccgc acagcgagat gaagtgcgtc tggaccaggc cattggtgct
      661 caggccgcag atgaagaagg tgccggcgag gatccagaac gtgcggttgt ggaccgcctc
      721 ggcgagcacc gtgaacggac cccagaagct gtgcggaagg gccgggccca cggccgccgg
      781 agtggcgtcc tcgccggtct cgccgtaagc gcgcatgccc atcactttcg ggctgtcctg
      841 catgaacagg aagacgagga tggcaacgat cacgcaggcg acgaacaccg ggatcaccgc
      901 aaagcgccag ccgacgttct cgatcagcca ggcggcgacg ggcaggaaga tgagctgccc
      961 ggtcgcggtg ctggccgcga gcaggcccac gaccaggccg cggcgcgccg tgaaccagcg
     1021 gttggccacc atcgcgccca gcaccagtgc cgtgaggccg gtgccgcagc cgaggaccag
     1081 gccccacagg atgaacagct gccaaagctg cgtgatctgc gttgccagca ccatggcggt
     1141 ggcgacgaac gccgccgccg ccatcatgac ccggcgcagg ccgtagcggc cgatgaagac
     1201 cgccgcgaac gggccgagca ggccgaacag ggcgaagcga accgcgaaca cggacgagag
     1261 ctggtcggtg gtccagccga actccttgct gagcggcttc agcatcgcgc cgggcagccc
     1321 gagcgccgcc gaggtggtga gcatcgcgaa gaaggtgacc gcggcgatca cccatgcata
     1381 gtggattccg cggcggccga gcaggccgga caaggcttgg gcgaacatga attcctttgc
     1441 agctgcaaag attgtagcta caattgatta tggttgctgc cgcccgctcc agatcgactc
     1501 cgccgcccgt cgaaacgccg gtcttgccgc gcggttgcag cagccagaag gtgcgtcgcc
     1561 tctcgcgccg catcagccag cacttcgatc gcatcgtcgc cagctcgggg ctgaagacga
     1621 cgcagtattc gctgctgagc catgtcgtgc agctcggccc gatccgcccc ggcgagctgg
     1681 cccaggccat ggacctcgac gcgtcgacgc tgacgcgcaa cctgcatcct ctggctgccg
     1741 cgggttgggt cgtcgtcggt ccgggggaaa acgagcgtag tcgcatggtc agtgccaccg
     1801 atgccgggcg cgtgaagcgc gcggaggctc agcgcacgtg gaagcgggcc cagctcgcgt
     1861 tcaacgaacg ggtcggcgcg gaggcagtcg gacgcttgca cgccgcggtc gactaatgcc
     1921 tggcgctgct cggcgacagc gccgactgac gaagggcggc tatgcgggct ctcgcggcgc
     1981 catcgtcaac atgagct
//
LOCUS       DATAJL010000117         2898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27576,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000117 DATAJL010000000
VERSION     DATAJL010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2898
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27576"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..346
                     /locus_tag="VHN39_02170"
     CDS             <1..346
                     /locus_tag="VHN39_02170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815171.1"
                     /translation="GARRIPATTLKRCASEARALIEFAQEGGAIHQVAAGADGSEWSL
                     RQAICAWLDDTSLPAVLKRRALRLNRRRGGRPATTTRTLRAVEELVEFARAGRPGALD
                     ELRSIRALIGNG"
     gene            783..>2898
                     /locus_tag="VHN39_02175"
     CDS             783..>2898
                     /locus_tag="VHN39_02175"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815172.1"
                     /translation="MTGTRATGMKAADSAAPIQVLGATALKQVGPPDLMQAIAQNLPS
                     FNAQGFGGDAANLTLSAALRGLNPNDTLVLVNGKRRHGTGNLAVDGGSPYSGSATADL
                     GLIPVGAIDHIEVLQDGAAAQYGSDAIAGVVNIILKNSAEGGVVSATGGQYFENGGKT
                     GAWSFNDGTKLGDKGFLNFTLEERYHEHSIQGGPDRRLFDINGKLLASDSAVDAGVIN
                     APGAPRVNFINGDPAFNLYNFFYNAGYDLGGGIEAYSFGSYSHRNASSYENLRVPSKV
                     SGTTSAGVKYFPFPAGFNPVEVLDEDDYSFTGGIKGTMDGWSWDLSTTYGRDRDRIST
                     DGSANAQLFPVLAAVSATPIVPQRDFFDGIFMATEWTTNLDIVKTFDIGAASPLNFAF
                     GAETRHNEFELDAGEPSSYFGAGAQSFTGYDPSNAGRHTRNDYAGYVDFALDPIKDLH
                     LDLAGRYSHYSDFGDATVGKLTGRYDFSPMFAVRGTISNGFRAPTLAEEFYSGTNVSP
                     SFAEVQLPANSAAAQIAGFAPLKPEKSTNYSLGFVAHPMDNLQISFDAYQIEVRDRII
                     VTGLIFGSDVSGGVNHVISQAVLNAITAHGNTLDTGISYAGIAVFTNGVNTRTQGAEL
                     TVNYASDFGEYGHVDWTGGLNYNKTTITKLDALPAQDFSAAPTIITQTSLLSPSALSS
                     LTTATPREKFVGNAYWTLGLSRD"
BASE COUNT          514 a         1065 c          875 g          444 t
ORIGIN      
        1 gggcgcgcgc cgcatcccgg ccacgacgct caagcgatgc gcctccgagg cccgcgccct
       61 gatcgagttc gcacaggagg gcggcgcgat ccaccaggtc gccgccggcg ccgacgggtc
      121 cgagtggagc ctgcgccagg cgatctgcgc ctggctcgac gacaccagcc ttccggcggt
      181 cctgaaacgg cgcgccctgc gtctcaatcg tcggcgcggc ggacgtccgg cgaccacgac
      241 ccgcacgctt cgtgctgtcg aggaactggt ggaattcgcg cgcgctggcc gccccggcgc
      301 cctggacgaa cttcgctcga tccgggcatt gatcggcaac ggctagccga caaatgtgcg
      361 ccgagccgcc gatgcggcgt cggcgccaca ccctccttgg cgcgacaggc cccatgacga
      421 cgccaacctc cggcgcggcg cctgaaaact agacggcggc cgccggaggg ctgtctcgca
      481 actgtaatat ttgcgggcgc cgctttgacc ggtctgcagt cgaacgcggc gaatttcgcc
      541 gtccaccgac aattccccaa ggtcagcgtg gacacggcca gccgacccgg cactctttag
      601 gcaactaaga accgacgggg attgaagcgt tcggtcgggc ttccagacaa aaaattgggg
      661 gtccagacgt gaacaaacta ttcgtaggcg cgagccttat cgcgctctct gctgttacat
      721 cttctgcggc ctatgcggcc gatgccgccg cggatgcttc cgccggtgtc tccgaagtca
      781 tcgtgacggg cacgcgggcc accggcatga aggcggccga tagcgccgct cccatccagg
      841 tcctgggcgc cacggcgctc aagcaggtgg gcccacccga cctgatgcag gcgatcgccc
      901 agaacctgcc ctccttcaac gcgcagggct tcggcggcga cgccgccaac ctgacgctct
      961 cggcggccct gcgcggcctg aaccccaacg acaccctggt gctggtgaac ggcaagcgcc
     1021 gccacggcac aggcaacctc gccgtcgacg gcggcagccc ctactcgggc tcggcgaccg
     1081 ccgacctggg cctcatcccg gtcggcgcca tcgaccacat cgaggtgttg caggacggcg
     1141 cggccgccca gtacggctcc gacgccatcg ccggcgtggt caacatcatt ctgaagaaca
     1201 gcgccgaggg cggtgtcgtc tcggcgaccg gcggccagta ctttgaaaac ggcggcaaga
     1261 ccggcgcctg gtcgttcaac gatggcacga agctgggcga caagggcttc ctgaacttca
     1321 cgctcgaaga acgctatcac gagcacagca tccagggcgg cccggaccgg cggctgttcg
     1381 acatcaacgg caagcttctg gccagcgaca gcgcggtcga cgccggcgtg atcaacgccc
     1441 cgggcgcgcc gcgggtcaac ttcatcaacg gcgaccccgc gttcaacctc tacaacttct
     1501 tctacaacgc cggttacgac ctgggcggtg gcatcgaggc ctacagcttc ggcagctaca
     1561 gccaccgcaa cgcctcgtcc tacgagaacc ttcgcgtgcc cagcaaagtc agcggcacga
     1621 cctcggccgg cgtgaagtac ttcccgttcc ccgccggctt caacccggtc gaggtgctgg
     1681 atgaggacga ctactccttc accggcggca tcaagggaac catggacggc tggtcctggg
     1741 acctgtcgac cacctacggc cgggaccgcg accgcatctc gaccgacggc tcggccaacg
     1801 cccagctgtt cccggtcctc gcggcggttt cggcgacccc gatcgtgccg cagcgagact
     1861 tcttcgatgg catcttcatg gccaccgagt ggacgaccaa cctcgatatc gtgaagacgt
     1921 tcgatatcgg cgccgcttcg cccttgaact tcgccttcgg cgcggagacc cggcacaacg
     1981 aattcgagct cgacgcgggc gagccctcct cctacttcgg cgcgggcgcc cagtcgttca
     2041 ccggctacga cccttccaac gccggccgcc acacccgcaa cgactacgcg ggctacgtgg
     2101 acttcgcgct ggacccgatc aaggacctgc acctcgatct ggctggccgc tattcgcatt
     2161 acagcgactt cggcgacgcc accgtcggca agctgaccgg ccgctacgac ttcagcccga
     2221 tgttcgccgt gcgcggcacc atctccaacg gcttccgcgc cccgaccctg gcagaggaat
     2281 tctactccgg caccaatgtg tcgccctcct tcgccgaagt gcagctcccg gccaattccg
     2341 cggcggccca gatcgccggc ttcgcgccgc tgaagccgga gaagtcgacc aactacagcc
     2401 tcggcttcgt cgcccacccg atggacaacc tgcagatcag cttcgacgcc tatcagatcg
     2461 aagtccgcga ccgcatcatc gtcaccggcc tgatcttcgg gtccgacgtc agcggcggcg
     2521 tcaaccacgt gatctcgcag gccgtgctga acgccatcac ggcgcacggc aacacgttgg
     2581 acaccggcat ctcctacgcc gggatcgcgg tgttcacgaa cggcgtgaac acccgcaccc
     2641 agggcgccga actgacggtc aactacgcct ccgacttcgg ggagtacggc cacgtcgatt
     2701 ggaccggcgg cctcaactac aacaagacca ccatcaccaa gctcgacgcg ctgccggccc
     2761 aggacttttc agcggcgccg acgatcatca cccagacgtc tctgctcagc ccgagcgcgc
     2821 tgtcctcgct caccacggcc acgccgcgtg agaagttcgt cggcaacgcc tattggacgc
     2881 tcgggctgag cagagacg
//
LOCUS       DATAJL010000118         1909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91016,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000118 DATAJL010000000
VERSION     DATAJL010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91016"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(15..1145)
                     /locus_tag="VHN39_02180"
     CDS             complement(15..1145)
                     /locus_tag="VHN39_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815173.1"
                     /translation="MSAKIHWFQRWLLPGLAFKAVVIGGGYATGRELASYFLPSGPRG
                     GLYAMLLSTVIWSTVCAVTFLFALRTSSRDYRTFFRNLLGRFWPVYEVAYLAALVVIL
                     AAFAAAAGAIAQAVFGLPPIAGALALMAMITLVAAWGNDSVERLFKYVSFLLYGTYAV
                     FLILSLLKFGGRIGAAFATETPTTGWPVGGLTYAGYNIIGAIIILPVTRHLTSKKDAV
                     IAGLLAGPLAMAPAVLFFIVMAGFYPAIQQQVLPSDFLLGQLGFPAFRILFQVMIFAA
                     LLESGAGGVHAINERIAHAYRRGDERTFTKPMRLAVTVAILAGSVFVADRVGLVSLIA
                     NGYRWLSYVLLAIYVAPLLTFGVWQLSRPAAAAGPPTLEPVA"
     gene            1439..>1909
                     /locus_tag="VHN39_02185"
     CDS             1439..>1909
                     /locus_tag="VHN39_02185"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2815174.1"
                     /translation="MDLSRRASMAGMLMALAAPTLSAAKTAGRWAPVESAARKMIADR
                     LVPGLQICVRRHGAVAFSRGFGLADIETSTPMAPSTVCRIGSVSKQFTAAGILLLVQD
                     GKLSLDDPLSRFLPDFPNAERLTIRRLLSHTAGLGNYTETTPPELVWQASRTDRD"
BASE COUNT          361 a          638 c          659 g          251 t
ORIGIN      
        1 gaaccgggcg gcggctaggc gaccggctcg agcgtcggcg ggcccgccgc ggccgccggc
       61 cgtgacagct gccaaacccc aaaagtcagc agcggcgcga cgtagatcgc cagcagcaca
      121 taggacagcc accggtagcc attggcgatg agcgacacca agccgacgcg atcggcgacg
      181 aacaccgagc cggcgaggat cgccaccgtc accgccaggc gcatgggctt ggtgaaggtc
      241 cgctcatcgc cccgccgata ggcgtgagcg atgcgctcgt tgatggcgtg gacgccgccc
      301 gcgccgctct ccaagagcgc ggcgaagatc atcacctgga agaggatgcg gaaggccggg
      361 aatcccagct ggcccagcag gaaatcggac ggcagcacct gctgctggat cgccgggtag
      421 aagccggcca taacgatgaa gaacaggacg gccggcgcca tggccaacgg tcccgccaga
      481 aggccagcga taacggcgtc cttcttggag gtcaggtgcc gggtcaccgg caggatgatg
      541 atcgcgccga tgatgttgta accggcatag gtgaggcccc cgacgggcca gccggtggtc
      601 ggggtttcgg tggcgaaggc cgcgccgata cggccgccga acttgagcag cgacaggatc
      661 aggaagaccg cataggtgcc gtagagcagg aacgagacat atttgaaaag ccgctcgacg
      721 gagtcgtttc cccaggccgc caccagggtg atcatggcca tcagggccag ggcgccggcg
      781 atgggcggca ggccgaacac cgcctgagcg atggcgccgg ccgcggcggc gaaggccgcc
      841 aggatgacca ccaaagccgc cagataagcg acctcataga ccggccaaaa ccggcccaac
      901 aggttcctga agaaggtccg gtagtcccgg ctcgaagtgc gcagggcgaa gaggaacgtg
      961 accgcgcaga ccgtgctcca gatcaccgtc gacagcagca tggcgtagag cccgccgcgc
     1021 ggcccgctgg gcaagaagta ggacgccagc tcgcggccgg tggcgtagcc gccgccgatg
     1081 acgaccgcct tgaaagctag acccggaagc agccagcgtt ggaaccagtg gatcttcgca
     1141 ctcacgtcgg tgtctcccga tgcgccaaag gttcgctccc ctaggacgcc ggccgcgccg
     1201 atgggatcag cgacgaattt tcgatcctag caatcgtttt ccgatatgca aatggcgcac
     1261 gctggcgccg tcccgccgtg cgccccgcgc ccgcctggtt ggcctcggaa gcggcgccag
     1321 cccagggcga cgcggttggg gcgcgttgcg gattttcccg attggaaaat tgaccgttgc
     1381 cacggccgcc gtcattcggg caaggtgacc agggtcagca gccccggggg aatcggacat
     1441 ggacctgagc cgacgcgcgt cgatggccgg gatgctgatg gccctggccg cgccgaccct
     1501 gtccgccgcc aaaacggcgg gacgatgggc gccggtcgaa agcgccgcgc gcaagatgat
     1561 cgccgaccgg ctggtccccg gcctgcagat ctgcgtgcgc cggcacgggg cggtggcgtt
     1621 ctcccgcggg ttcggcctgg ccgacatcga gacctcgacc cccatggcgc cctccacggt
     1681 ctgccggatc ggttcggtca gcaaacagtt caccgccgcc ggcatcctgc tgctggtcca
     1741 ggacggaaag ctgtcgctgg acgacccgct gtcgcggttc cttccggatt tccccaacgc
     1801 tgaacgcctg acgatcaggc gcttgctcag ccacaccgcg ggcctcggga actacaccga
     1861 gaccacaccg ccggagctgg tctggcaggc gagccggacc gaccgggac
//
LOCUS       DATAJL010000119         3477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27589,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000119 DATAJL010000000
VERSION     DATAJL010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3477
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27589"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /locus_tag="VHN39_02190"
     CDS             complement(<1..814)
                     /locus_tag="VHN39_02190"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815175.1"
                     /translation="MTYASPHMFASEGAILRGRLYAPEGKVSAPIVVMAHGFSAVAAQ
                     LEPQATAFAAAGFAAFVFDNPGFGLSGGFPRQEVDPVRQVRGYRDAVSYVRTLDGVDP
                     ERIAIWGSSFSGGHVLQAGAMDPRVSVVISQAPFISGWELIGGWPNGQEVITMTTAER
                     EARGVGAEPTVMRVVGLPDEACALPGDDGYAYFTSTGGPTWKNEITLSSLELARAHEP
                     ALWIERIAPRPLLMIVADNDLVTPTAHALAAFQRAGGPKKLVTVSGGHFDVYS"
     gene            complement(849..2585)
                     /locus_tag="VHN39_02195"
     CDS             complement(849..2585)
                     /locus_tag="VHN39_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2815176.1"
                     /translation="MHDLVIRGGTVVDGTGSAPRLADVAVDGGLISQVGVVAEPGRRE
                     IDAAGLLVTPGWVDIHTHYDGQVTWDPYLSPSCWHGVTTVVMGNCGVGFAPARPDRHE
                     WLIGLMESVEDIPGSALAEGIKWDWETFPEYLDALDRKQLVLDVATQAPHGSIRAYVM
                     GERGARNEEATPADIAEMAKITREALEAGALGFSTSRTQLHRAKDGEPVPGTYAGADE
                     MVGIGKALGQAGHGVFEIASDMAIPDDEFRWMKQFAAASGLPVTFGMLQSPMQPEKWR
                     DLLKLTEEARAEGAQITAQIACRPTGMVLGWQSTVHPFVQKSAYRAIAALPFAERLIH
                     LKDPAVRDAILNENVPPPPGIGALLTHAFGNMFRLERDGRLDYEPRPEDSIAAEAQRA
                     GVEPQAVVYDMLMENDGRGYIYLPLLNYAKFNFDHIAEMMNHEATILSLSDGGAHCGV
                     ICDASFPTYMLSYWVRDRERGERLPLEKVVAMQTRDTARLYGMNDRGMLTPGMKADIN
                     VIDFERLQILAPEMIFDLPAEGRRLVQRAQGYRATVVSGVVTFEEGVATGELPGKLVR
                     GPQAAPVLLAAE"
     gene            2713..2802
                     /locus_tag="VHN39_02200"
     tRNA            2713..2802
                     /locus_tag="VHN39_02200"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2747..2749,aa:Ser,seq:tga)
     gene            complement(2833..>3477)
                     /locus_tag="VHN39_02205"
     CDS             complement(2833..>3477)
                     /locus_tag="VHN39_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX2815177.1"
                     /translation="HLRECWRCDDQLVATPAFAEVHANLGNDTITGANVQDYLRGDAG
                     DDSISGGSGFDDSNGNMGNDTIHGNAGDDYSVGGKDNDLLFGDDGNDIVWGNLGNDTC
                     DGGNGNDQCRGGQGDDSISGGAGDDFISGDRGNDTETGGAGADIFHTFSGAGIDKVLD
                     FHLAEGDRVMVDPGTTFMVSQVGADTVIDMGNGDQMILVGVQMSTLTGSWIFGA"
BASE COUNT          524 a         1166 c         1218 g          569 t
ORIGIN      
        1 cggaatagac gtcgaaatgg ccgccggaca ccgtcaccag cttcttgggt ccgccggcgc
       61 gctggaaggc ggccagggca tgagccgtcg gggtgacgag gtcgttgtcg gcgacgatca
      121 tcagcagcgg ccgaggcgcg atgcgctcga tccagagggc cggctcgtgg gcgcgggcga
      181 gctccagcga cgacagcgtg atctcgttct tccaggtcgg gccgccggtc gaggtgaaat
      241 aggcgtagcc gtcgtcgccg gggagcgcgc aggcctcgtc cggcaggcca accaccctca
      301 tgaccgtggg ctcggcgccg acgccgcggg cctcgcgctc ggcggtggtc atggtgatga
      361 cctcctgccc attgggccag ccgccgatca gctcccagcc gctgatgaag ggcgcctggg
      421 agatcaccac ggaaacgcgg gggtccatgg cgccggcctg cagcacgtga ccgccggaga
      481 agctggagcc ccagattgcg atccgttcag ggtcgacgcc gtcgagagtg cgcacgtagc
      541 tcacggcatc gcggtagccg cgcacctggc gcaccggatc gacctcctgc ctcgggaagc
      601 cgcccgagag tccgaacccc ggattgtcga acacgaaagc cgcgaacccc gccgccgcga
      661 aggcagtggc ctgcggctcg agctgggcag cgacggccga gaagccgtgc gccatgacga
      721 cgatcggggc ggaaaccttg ccttcagggg cgtagaggcg accgcgcagt atggcgcctt
      781 cggaggcaaa catgtgtggt gaggcgtagg tcatggagca gatacggcca agcttgcctc
      841 tttggatgct attccgccgc gagcaagacc ggggcggcct gaggcccgcg gaccagcttg
      901 ccgggcagtt cgcctgtcgc cacgccttcc tcgaaggtga ccacgccgga gaccacggtc
      961 gcccgatagc cctgcgcccg ctgcaccagc cggcgcccct cggccggaag gtcgaagatc
     1021 atctccggag ccaggatctg taggcgctcg aagtcgatga cgttgatgtc ggccttcatg
     1081 ccgggcgtca gcatgccgcg gtcgttcatg ccgtagagcc gggcggtgtc gcgggtctgc
     1141 atggcgacga ccttctccag cggcaggcgc tcgccccgct cacggtcgcg gacccagtag
     1201 ctcagcatgt aggtcgggaa gctggcgtcg cagatgacgc cgcagtgcgc gccgccgtcc
     1261 gaaaggctga ggatggtcgc ctcgtggttc atcatctcgg cgatgtggtc gaagttgaac
     1321 ttcgcgtagt tcagcagggg caggtagatg tacccgcgcc cgtcgttctc catcagcatg
     1381 tcgtagacga ccgcctgcgg ctcgacgccg gcgcgttgag cttccgcggc gatggagtcc
     1441 tcagggcggg gctcatagtc gaggcggccg tcacgttcca ggcggaacat gttgccgaag
     1501 gcgtgggtca gaagcgcgcc gatgccgggc ggcggcggca cattctcgtt gaggatcgcg
     1561 tcgcgcaccg ccgggtcctt caggtggatc aggcgctcag cgaagggcag ggcggcgatg
     1621 gcgcggtagg cgctcttctg cacgaaggga tgcaccgtcg actgccaccc cagcaccatg
     1681 ccggtgggcc ggcaggcgat ctgggcggtg atctgggcgc cttccgcccg ggcttcttcg
     1741 gtgagtttca gaaggtcgcg ccacttctcc ggctgcatcg gcgactgcag catcccgaag
     1801 gtcaccggca gacccgacgc cgcggcgaac tgcttcatcc agcggaactc gtcgtcgggg
     1861 atagccatat ccgaggcgat ctcgaacacc ccgtggccgg cttggcccag ggccttgccg
     1921 atgcccacca tctcgtcggc gccggcgtat gtgcccggga ccggctcgcc atccttggcg
     1981 cggtgcagct gggtgcggga ggtggaaaag cccaacgcgc cggcctccag ggcttcgcgg
     2041 gtgatcttgg ccatctcggc gatgtcggcg ggcgtcgcct cctcgttgcg tgcgccgcgt
     2101 tcgcccatga cgtaggcccg gatcgagccg tgcggcgcct gggtggctac atcgaggacc
     2161 aactgcttgc ggtccagcgc gtcgaggtat tcggggaagg tctcccagtc ccacttgatg
     2221 ccctcggcca gcgcggagcc cggaatgtcc tccaccgact ccatcaggcc gatcagccat
     2281 tcgtggcggt cggggcgggc aggcgcgaag ccgacgccgc agttgcccat gaccacggtc
     2341 gtgaccccgt gccagcagga gggtgagagg tacgggtccc aggtgacctg gccgtcgtag
     2401 tgggtgtgga tgtcgaccca gcccggggtg accagcaggc ccgcggcgtc gatctcgcgc
     2461 cggccgggct cggcgaccac gccgacctgg ctgatcaggc cgccatcgac ggctacgtcg
     2521 gccaagcggg gggcggagcc cgtgccgtcc accacggtcc cgccgcggat caccaagtca
     2581 tgcatcgtcg cctcccaggg cttttgccgc agcctacgcc ggtagggcgc gatgtcgacg
     2641 gggacgccac gtcaacccga tctcattggg cgagtggagc cccgggccga cccctgctaa
     2701 acaccgcgtc ccggacgggt ggccgagtgg tttaaggcag cggtcttgaa aaccgccgtg
     2761 ggtgaaagcc caccgtgggt tcgaatccca ccccgtccgc cactcacgcc gcccaagtcg
     2821 gcgcgccgcg cttcaggccc cgaagatcca gcttccggtc agggtcgaca tctgcacgcc
     2881 caccaggatc atctggtcgc cattgcccat gtcgatcacc gtgtcggcgc ccacctggct
     2941 gaccatgaag gtggtcccgg ggtcgaccat cacccggtcg ccttcggcga ggtggaagtc
     3001 cagcaccttg tcgatgccgg cgccggagaa ggtgtggaag atgtccgcgc cggccccgcc
     3061 ggtctcggtg tcattgcccc ggtcgccgga gatgaagtcg tcgccggctc cgccggagat
     3121 gctgtcgtcg ccttgtccgc cgcggcactg gtcgttccca ttgccgccgt cgcaggtgtc
     3181 gttgccgagg ttgccccaga cgatgtcatt gccgtcgtcg ccgaacagca gatcgttgtc
     3241 cttgcccccc acggagtagt cgtcgccggc gttcccgtgg atcgtgtcgt tgcccatgtt
     3301 gccgttggaa tcgtcgaacc ccgacccgcc cgagatcgag tcgtcgccag cgtcgccgcg
     3361 caggtagtcc tggacgttag cgccggtgat ggtgtcgttc ccgaggttgg cgtgcacctc
     3421 cgcgaatgct ggcgttgcga cgagctggtc gtcgcaacgc cagcattcgc ggaggtg
//
LOCUS       DATAJL010000120         2831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_116795,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000120 DATAJL010000000
VERSION     DATAJL010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116795"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..271
                     /locus_tag="VHN39_02210"
     CDS             <1..271
                     /locus_tag="VHN39_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HEX2815178.1"
                     /translation="NIEVKENLLTVTGRKAANDEPRRFLHRGLAERNFERRFQLADYV
                     VVTEAALADGLLSIALKRELPEALKPRRIEIAVGQPSLIEGEKAA"
     gene            complement(334..1590)
                     /locus_tag="VHN39_02215"
     CDS             complement(334..1590)
                     /locus_tag="VHN39_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003168769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX2815179.1"
                     /translation="MSEASHITRRINQAEADAICARHDRLWTSKPGGARAVFAWTDLS
                     GLDLTGRNLCDADFSGAVLAGCLMQGARLDHAIMFGADLQDVDLRGASLRRADLRGAC
                     LRNADLTGADMFEADLREGVLAAADPKVGFRRIEAGGSAKIGDAQGAKLVGANLERSK
                     LSGVIAVRADFTDAILKDARLVRANLKQATMKGCNLSGADLSGADLAGADLRDAVLVG
                     AKTLSWNVSNANMAGALTDKPAGIAASSLPYKTMIQDHARWCETGGLHGAPSVFDGAD
                     LRALETVRGYNLTALSAKGAVFYGIDMEGVQLQGAHLEGADLRNCNLRRADLRGAKLE
                     GAKLSGSDLREAQMGPLLLGADRVLACDLRRAELKGSDLTGADVRQAIFIDADVSRAN
                     FTGALTKQANFTGVARHGARGLDEGI"
     gene            complement(1662..2108)
                     /locus_tag="VHN39_02220"
     CDS             complement(1662..2108)
                     /locus_tag="VHN39_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEX2815180.1"
                     /translation="MTKTEDEAWMARAIALAKANVGLTGDNPSVGCVIVRDGAVVGEV
                     ATAPGGRPHAEELALDRAGDAARGAVAYVTLEPCGERSSGAASCGERLASAGIVRVVI
                     ACEDPSIMAAGRGLRRLREAGVARDLGVLGEAASALYAAYRPKGGG"
     gene            complement(2146..>2831)
                     /locus_tag="VHN39_02225"
     CDS             complement(2146..>2831)
                     /locus_tag="VHN39_02225"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004619 - phosphoglycerate mutase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HEX2815181.1"
                     /translation="QSQWNLEDRFTGWVDVDLTAEGEAQAKKGGELIAAAGLAIDRCY
                     TSVLTRAIRTSWLALAAAGQTFVPEVKDWRLNERHYGGLTGLNKTETAAKHGEAQVKI
                     WRRSYDIPPPPLAPGGEFDFGKDRRYAGAVLPDTESLETTLFRVQPYWDTEISPHLLA
                     GETLLVAAHGNSLRAIVKLLFDLSGEAIVGVEIPTGNPLLIELDAHLKPTAARYLDQT
                     RAQALPAVG"
BASE COUNT          420 a          972 c         1002 g          437 t
ORIGIN      
        1 gaacatcgag gtgaaggaaa acctgctcac cgtcaccggc cgcaaggccg ccaacgacga
       61 gccacgccgc ttcctgcacc gcggcctcgc cgagcgcaac ttcgagcgca ggttccaact
      121 cgccgactat gtggtggtga ccgaagccgc cttggccgac ggcctgctct ccatcgccct
      181 gaagcgcgaa ctgcccgagg ccttgaagcc ccgccgcatc gaaatcgcgg tcggccaacc
      241 cagcctgatc gaaggcgaaa aggccgcgta acgtccgcag cctgacgtga ataggggcgg
      301 cgcgagcgat cgcgtcgccc gttttcgtga gcgctagatg ccttcgtcca ggccgcgcgc
      361 gccgtggcgg gcgacgccgg tgaagttggc ctgtttggtg agcgcgccgg tgaaattggc
      421 ccgggagaca tcggcgtcga tgaagatcgc ctggcgcacg tcggcgccgg tgaggtccga
      481 gcccttgagt tcggcccggc gaaggtcgca ggcgagcacc cggtcggcgc ccagcagcag
      541 cggccccatc tgggcctcgc gcagatcgga gccggagagc ttggcgccct cgagcttggc
      601 gccgcgcaga tcggcccttc gcagattgca gttgcgcaga tccgcgccct ccagatgggc
      661 gccctgcagt tgcacacctt ccatgtcgat gccgtagaac accgccccct tggccgagag
      721 cgcggtcaga ttgtagccgc gtacggtctc cagcgccctg aggtccgcgc catcgaacac
      781 cgagggggcg ccgtgcaggc cgccggtctc acaccagcgg gcgtggtcct ggatcatggt
      841 cttgtagggc aggctcgagg ccgcgatacc ggccggcttg tcggtgagcg cgccggccat
      901 attggcgttg gagacgttcc acgagagcgt cttggcgccc accaggaccg cgtcgcgcag
      961 atccgcgccg gccaggtcag cgcccgacag gtcggcgccg gaaagattgc agcccttcat
     1021 ggtcgcctgt ttcagattgg cgcgcaccag gcgggcgtcc ttgaggatgg cgtcggtaaa
     1081 gtcggcgcgc acggcgatga cgccggagag cttggagcgt tcgaggttgg cgcccaccag
     1141 cttggcgccc tgggcgtcgc cgatcttggc cgagccgccg gcttcgatgc ggcggaagcc
     1201 gaccttggga tcggccgcgg ccagcacgcc ttcgcgcaga tcggcctcga acatatccgc
     1261 gccggtgagg tcggcgttgc gcaggcaggc gccgcgcaag tcggcccggc gcagcgaggc
     1321 gccgcgcagg tcgacgtcct gcagatcggc gccgaacatg atggcgtgat ccagcctggc
     1381 gccttgcatc aggcagccgg ccagcaccgc gccggagaag tcggcgtcgc agaggttgcg
     1441 cccggtgagg tcgaggccgg agaggtccgt ccaggcgaac accgcccgcg cgccgcccgg
     1501 cttggaggtc cacagacggt cgtgccgcgc gcagatcgcg tcggcctccg cctggttgat
     1561 tcggcgggtg atgtgggacg cttcggacat gagactcttt gggccaggcg gcatggttac
     1621 ccgatcctag acggtggtga ttaacgggcc atttccgacg tctagccgcc gccctttggc
     1681 cggtatgcgg catagagcgc cgaagccgcc tcgccgagca cgcccagatc ccgggcaacg
     1741 ccggcttcgc gcagccgccg aaggccgcgg ccggcggcca tgatcgaagg gtcctcgcag
     1801 gcgatcacga cgcggacgat cccggcgctg gccagccgtt cgccgcagga cgccgcgccc
     1861 gacgagcgct cgccgcaggg ctccagggtg acataggcga cggccccgcg agccgcgtca
     1921 cccgcccggt cgagcgccag ctcctcggcg tgcggccggc cgccgggggc ggtcgccacc
     1981 tcgccgacca ccgcgccatc gcgaacgatc acgcaaccga cggacggatt gtcgccggtc
     2041 agcccgacgt tggcctttgc gagcgcgatg gcgcgggcca tccaggcttc gtcttcggtc
     2101 ttggtcatgg gcggatcatg gcccctctcc tcttgcagga gaagctcagc ccacggccgg
     2161 cagggcctgc gcgcgggtct gatccagata ccgcgcggct gtcggtttca gatgtgcgtc
     2221 gagctcgatc agcagcggat tgccagtggg gatctccacc ccgacgatgg cctcgcccga
     2281 gaggtcgaac agcagcttga cgatggcgcg cagggaattg ccatgggcgg cgaccagcag
     2341 ggtctcgccg gcgaggaggt gtggcgagat ctcggtgtcc caatagggct gcacgcggaa
     2401 gagcgtggtt tccaggctct cggtgtccgg cagcaccgcg ccggcgtagc ggcggtcctt
     2461 gccgaagtcg aattctccgc ccggcgccag cggcggcggc gggatgtcat aggagcggcg
     2521 ccagatcttg acctgagcct cgccgtgttt ggcggcggtt tcggtcttgt tgagtccggt
     2581 caggccgccg tagtggcgct cgttcagccg ccagtccttg acctccggta cgaaggtctg
     2641 gccggccgcc gccagcgcca gccaggaggt gcggatcgcc cgggtcagga ccgatgtgta
     2701 gcaccggtcg atggccagcc ccgccgcggc gatcagttcg ccgcccttct tcgcctgggc
     2761 ttcgccctcg gcagtcaggt ccacatccac ccagccggtg aagcggtctt ccaggttcca
     2821 ctggctctgg c
//
LOCUS       DATAJL010000121         4062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_103998,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000121 DATAJL010000000
VERSION     DATAJL010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4062
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103998"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..880)
                     /locus_tag="VHN39_02230"
     CDS             complement(<1..880)
                     /locus_tag="VHN39_02230"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX2815182.1"
                     /translation="MNTGLLAIGLTTLDINAYPIDGLTHTERATLIQGLVCAPAGTAA
                     GAALVAAKLGAKVKLVGAVGDDMNGLFVRAGLEALGVDTSLLATRAGERTSSTLLAVE
                     SDGRRSSFHCPGTGGAPPLDTAVAAAARGSRFVHYAAIGGSTTDGGPGAQLLREAKAG
                     GAVVTCDLIGPRRSAIDEIARILPHVDYFMPSAAEAFFLSGTDDLSNAAQRFIELGAK
                     ACVIKNGRQGALVLLDGQEHVIPAFAVTPVDTTSCGDSFCAGFIAALDRGWAPLDACR
                     FAGMTAGLVAEGVGTLG"
     gene            complement(897..1550)
                     /locus_tag="VHN39_02235"
     CDS             complement(897..1550)
                     /locus_tag="VHN39_02235"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX2815183.1"
                     /translation="MPKSSESAARQELAQAYREVVSLGLTELSSGNLSLRFGEGMLIS
                     PTGASGDSIAEDSLVYVGPDDNWDAGQRPSSEWQLHARIYRGSPNAHAVVHTHSDYCV
                     AVACHCKPLPGFHYMVGAFGGDDVPCVPYATFGSETLAHDVAEALKTRSACLMSNHGA
                     TARGGSLSAAVKLAHRLEISCRHYVLARALGEPRHLTAEEWADFHRRVGNTGYGRQA"
     gene            complement(1790..2650)
                     /locus_tag="VHN39_02240"
     CDS             complement(1790..2650)
                     /locus_tag="VHN39_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815184.1"
                     /translation="MALRRRSTRRRPLSARKRPASAERIAENRRAVKFYAAVGVGAAL
                     LLALAIFARPRPVDKATGCETDQLLPKAHTVLVIDQTDAFTPAQITYAKKVLLYEYDH
                     LRRYDLLTVRGVGNDADTPLRNFKLCRVQKRAEVYGIAVNEDQVAHRFETVAGKPMAH
                     YLDSLARVGEAETSPLVETISNISREEDFGPGVGARRLVVISDLAQNSANFSQYRNKG
                     AKVALPTELGVYRADLKGATVRVHYLLRPSLRRLQGAEHQATWQDYFERAGARDVKIG
                     WGVGLGDTKR"
     gene            complement(2655..>4062)
                     /locus_tag="VHN39_02245"
     CDS             complement(2655..>4062)
                     /locus_tag="VHN39_02245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815185.1"
                     /translation="KDDRDLNAMQRRVCEEIFRGIASAHRFLAEQLARAAQLLAGLRP
                     APLDEDLEKARIDQVVARSLNEHRGELIDLKERELDALLDLRYFRANNRLQRAAVYRA
                     SPHGLASLLALLMLVESGFNGLLLRKISDEGWIGGIFIALLISAVNLALGVAAGGFGW
                     RLLGHTRLQMKLLGAGVSAACLAAAVIWNIYIAHFREVAELAATQAAGGALPQAALDA
                     WRHVRSEGLFGLHTMYSWALLVLGLGAHLLVSKESWDHLADRYFDYMKVDRRYQQSRD
                     AFTDAMAEVEDNTRAAMEEALAELDQAVAESALAAAQARHVNEQAHQRHTDVLDAEAE
                     WVRQGASLLQAYREENLKVRHEGTEPGYFRTFPALGDYRNGRFGETAEKAELHGSLTS
                     VEARLAALRDNLAAAEAVVRENGQIAKRLRLYGEGLLSKLDDGVRVIEAEVLQVADRQ
                     VSQRRELAADAVSASRVA"
BASE COUNT          609 a         1410 c         1391 g          652 t
ORIGIN      
        1 cgccgagggt gcccacgccc tccgccacca ggccggcggt catgcccgcg aaacggcagg
       61 cgtccagcgg agcccagccg cgatccaggg cggcgatgaa gccggcgcag aaggaatcgc
      121 cgcagctggt ggtgtcgacc ggtgtgacag cgaacgccgg gatcacatgc tcctgcccgt
      181 cgagcaggac gagcgccccc tggcggccat tcttgatcac acaggccttg gcgccgagtt
      241 cgatgaatcg ctgagccgcg ttggacaggt cgtccgttcc gctcaggaag aaggcttcgg
      301 cggcgctggg catgaaataa tcgacgtgcg gcaggatcct ggcgatctcg tcgatcgcgc
      361 tgcgtcgcgg gccaatcagg tcgcaggtca ccacagcgcc gccggccttc gcctctcgca
      421 gcagttgggc gccgggcccg ccgtcggtcg tggagcctcc gatggccgcg tagtgtacga
      481 atcggctgcc gcgcgcggcg gcggccaccg ccgtgtcgag tggcggcgcg ccgccggttc
      541 ccgggcaatg gaagctggac cgacgcccat cgctctcaac ggccagcagg gtggacgacg
      601 tccgttcacc cgcccgggtc gccagcaagc tcgtgtcgac tcccagcgcc tcaaggcctg
      661 cacggacgaa caggccattc atgtcgtcgc ccacggcgcc aaccagcttg accttggcgc
      721 ccaatttggc ggccaccagg gcggcgccgg ccgccgtgcc cgcgggcgcg cagacgaggc
      781 cctggatcag ggtcgcgcgc tccgtgtgcg tcagcccatc gatgggatag gcgttgatgt
      841 ccagggtggt caggccgatg gccagcagtc cggtgttcat cagggcctcg aagtcatcac
      901 gcctgacggc cgtagccggt gttgcccacc cggcgatgga agtcggccca ctcctctgcc
      961 gtaaggtgtc gcggctcgcc cagcgcgcgg gcgaggacat agtggcggca ggatatctcc
     1021 agccggtgcg ccagcttcac ggcggcggac aggctgccgc cgcgcgccgt cgcgccgtgg
     1081 ttgctcatca gacaggcgct gcgtgttttc agagcttcgg caacgtcgtg ggccagcgtc
     1141 tcgctgccga aggtggcgta gggcacgcaa gggacgtcgt cgccaccaaa tgcgcccacc
     1201 atgtagtgga agcccggcag cggcttgcaa tggcaggcca cggcgacgca gtagtccgag
     1261 tgggtgtgga ccaccgcatg tgcgttcgga cttccgcgat agatgcgggc atgaagctgc
     1321 cactcgctcg acggtcgttg gccggcgtcc cagttgtcat cgggccccac gtagacgagg
     1381 ctgtcttcgg cgatgctgtc gccgctcgcg cccgtgggcg agatcagcat gccctctcca
     1441 aaccgcaggc tcaggttccc ggacgacagt tcggtgaggc ccaggctgac cacctcgcgg
     1501 tatgcctgcg ccaactcctg ccgggcggcg ctctccgagc tttttggcat cagcgccttt
     1561 cctttcgcgt ggagcctgcg ggctgactca gcgcgccgcc accccacggt aggttctccg
     1621 tcacgtcaat cgccaaagcc cgaaaatcat cggctcagca gcagggtcgt gacccatcgg
     1681 tcggagggcc tcgtggatcc ctcgaagacg agtttggtcg gtgcggccgt cgacttccgc
     1741 tatggtcgca agcggacctt ggcctcgtgg ccgctagcga gcacacgccc tagcgcttcg
     1801 tatcccccag cccgacgccc cagccgatct tgacgtccct ggcgccggcc cgttcgaaat
     1861 agtcctgcca ggtcgcctga tgttccgcgc cctggaggcg cctgaggctc ggccgcagca
     1921 gataatggac cctgaccgtc gcccccttca ggtctgcacg atagaccccg agctcagtcg
     1981 ggagcgcgac cttcgcgccc ttgttccggt actgcgagaa gttcgcgctg ttctgggcca
     2041 ggtcggaaat caccaccagc cgccgggcgc ccacgccggg cccgaaatcc tcctcgcgcg
     2101 agatgttgct gatggtctcc acgagcggcg aggtctccgc ctctccgacc ctggccaggg
     2161 agtcgaggta gtgcgccatg ggcttgccgg cgacggtttc gaagcggtgg gcgacctggt
     2221 cctcgttgac cgcgatccca tagacctccg cgcgcttctg cacccggcag agcttgaagt
     2281 tcctgagcgg cgtatcggcg tcgttgccca ccccgcggac ggtcaggagg tcgtagcggc
     2341 gaaggtgatc gtattcgtag agcagcacct tcttcgcata ggtgatctgg gccggggtga
     2401 aagcgtcggt ctggtcgatc accagcaccg tatgggcctt gggcaaaagc tgatcggtct
     2461 cgcagccggt cgccttgtcc accggtcgcg gccgggcgaa aatcgccagc gccagcagga
     2521 gcgccgcgcc cacgccgacg gcggcgtaga acttcacggc gcggcggttt tccgcgatcc
     2581 gctcggccga cgccggacgc ttgcgagccg agagcgggcg acggcgtgtg ctcctccgcc
     2641 gcagggccat ggcctcaggc cacgcggctt gcggagaccg cgtcggcggc cagttcccgg
     2701 cgctgggaga cctggcggtc ggccacctgc agcacctcgg cctcgatcac ccgaacgccg
     2761 tcgtcgagtt tcgagagcag gccttcgccg tacaggcgca ggcgcttggc gatctggccg
     2821 ttttcgcgga ccaccgcttc cgccgccgcc aggttgtcgc gcagcgccgc cagcctggcc
     2881 tcgaccgagg tcagcgagcc gtgcagctcc gccttctccg cggtctcgcc aaaccggccg
     2941 ttgcggtagt cgccgagcgc cgggaaggtc cggaaatatc cgggctcggt cccctcatgg
     3001 cgcaccttca ggttctcctc gcggtaggcc tgcaggagcg aggcgccctg ccgcacccat
     3061 tcggcctcgg cgtcgaggac gtcggtgtgg cgctgatggg cctgttcatt gacatgccgc
     3121 gcctgggcgg cggccagcgc gctctccgcc acagcctggt cgagttcggc cagggcctcc
     3181 tccatcgcgg ctcgcgtatt gtcctccacc tcggccatgg cgtcggtgaa ggcgtcgcgg
     3241 gactgctgat agcggcgatc gaccttcatg tagtcgaagt agcggtcggc caggtggtcc
     3301 cagctttcct tgctgaccag cagatgcgcg cccaggccca gcaccagcag cgcccacgaa
     3361 tacatggtgt gaagcccaaa caggccctcg gagcggacat ggcgccaggc gtcgagggcg
     3421 gcctgcggca gggcgccgcc ggcggcctgg gtcgccgcca gctcggcgac ctcgcggaaa
     3481 tgggcgatgt agatgttcca gatgaccgcg gcggccaggc aggcggcgct gacgcccgcg
     3541 cctagaagct tcatctgcag ccgcgtgtgg ccgagaagcc gccagccgaa accgccggcg
     3601 gcgacgccga gcgccaggtt caccgcgctg atcaggagcg cgatgaagat gcccccgatc
     3661 cagccctcgt cggagatctt gcggagcagc aggccgttga acccggactc caccagcatc
     3721 agcagggcga gcagcgaggc caggccgtgc ggtgaggcgc gatagaccgc ggcgcgctgc
     3781 agccggttgt tcgcgcggaa gtaccgaagg tccaggaggg cgtcgagctc gcgttccttc
     3841 aggtcgatca gctcgccccg atgctcgttc agcgagcgcg ccaccacctg gtcgatcctg
     3901 gccttctcga gatcctcgtc cagcggcgcc ggacgcagac cggccaggag ctgagccgcc
     3961 cgtgcgagct gctcggccag gaaccggtgg gccgaggcga tgccgcggaa aatctcctcg
     4021 cagacgcgcc gctgcatggc gttgaggtcg cggtcgtcct tg
//
LOCUS       DATAJL010000122         3946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_14811,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000122 DATAJL010000000
VERSION     DATAJL010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3946
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14811"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..645
                     /locus_tag="VHN39_02250"
     CDS             <1..645
                     /locus_tag="VHN39_02250"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2815186.1"
                     /translation="PAEWTAPDFDLARITAPANVPVSLPSQLIRNRPDILAAEADLHA
                     ATAAIGVAVAHQYPDIRLSAVLTQEAIKPGDIFQADAAAWTILGGLTAPVFHGGTLKA
                     ERRMAEADARISLARYEQTVLKAFVQVSDVLSNLGSDQQAIDSLKVANQAAEAGAADA
                     QNALRLGGGPMLDVVQAQRTLSRARRALVEAQGRRMSDLVELYAATAADWRTAS"
     gene            complement(642..2039)
                     /locus_tag="VHN39_02255"
     CDS             complement(642..2039)
                     /locus_tag="VHN39_02255"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815187.1"
                     /translation="MTAAAGAPAAKINIAKLALTSLAASSIEWYDFFIYGTAAALVFP
                     KIFFAAGLPLPVAQLASFSTFAVGFIARPVGGVIFGHFGDRVGRKKALVTALLMMGLA
                     TTSVGLLPGYATLGVLSPLLLILLRFIQGLAVGGQWGGAVLIAIENAPPNRRGFFGSF
                     AQMGVPLGVIMGNAIFLIMGATVPPDSFLAWAWRVPFLLSVVLVGLALYIQLKLEDTA
                     DFQAAQALAAKKHEDEAAALAAETGVSLAQAKAKIRAAQGSPILKVLAKNPKEILLAA
                     GAFVAANGTFYLMITYTVAYTTGTLHVAKTTILWAVVIASMLSAPVLPITAWLSDRVG
                     RRGVFMTGAALAALWSAWPFFHLLDSATFPLMLAALAGGLIFNSTMYGCQAALMTELF
                     STEFRYSGASLGYQIGAIFGGGFAPLIATALFAHYHASGAIAAYMVVLCLVSLVSVFL
                     LAETHSKAHRDAMNA"
     gene            complement(2140..>3946)
                     /locus_tag="VHN39_02260"
     CDS             complement(2140..>3946)
                     /locus_tag="VHN39_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEX2815188.1"
                     /translation="YSVVDCPGSLEFCADLDAALPAVDLAVVVAEPDPAKAALLQPTL
                     RELERLGIPHALFVNKMDLARGSLPELLAALAPVSSAPLVARQIPTWEGEKVSGFIDL
                     ALERAFVYRPNEPSTQVEIPGELRDAEADARFHMLEQIADFDDELLEQLLSDVVPSRD
                     AVFADLVREMNDGLIVPVFFGSAQNGFGVRRLLKALRHEAPLPDRAAKRLGVEAGAYV
                     LKAAYAGQSGKLAYARVFGKGLPDGADFVLPDGERCRAGGLFAVQGAALKKIASAPIG
                     EVCAIGKVEAAQAGQILSTTGRPQAVAAASSARRPLYAVALSATNRKDDVRLSGALAK
                     LIEEDPGLRLTHDPEGHQMLLAGQGDGHVRLALERLKRRFGLEIETQQPKTPYRETIQ
                     RGATQRSRHKKQSGGHGQFADVTVEIRPLPRGSGLVFSQKVVGGSVPKQWIPAVEQGV
                     RDGLEKGQLGFPVTDLEVILLEGQTHSVDSSEMAFRMAGRLAIDEGLPRCGAILLEPI
                     EKLTVYSPSPSASNVTSALTARRGQILGLAPREDWRGWERIEAYLPQSERQDLIAELR
                     GLTQGLGAFEADFDHMAELTGRLAAEASEGARPHA"
BASE COUNT          644 a         1313 c         1430 g          559 t
ORIGIN      
        1 cccgccgaat ggaccgcgcc ggacttcgat ctcgcccgga tcaccgcgcc cgccaacgtc
       61 ccggtcagcc tgccttcgca gctgatccgc aaccggcccg acatcctggc ggctgaggcc
      121 gacctgcatg cggcgaccgc ggcgatcggt gtcgccgtgg cccatcagta tcccgacatt
      181 cggctctcgg cggtcttgac ccaggaggcg atcaagccgg gcgacatttt ccaggccgac
      241 gccgcggcat ggaccatcct cggtggactg accgcgccgg tcttccatgg cgggacgctg
      301 aaggccgagc gacggatggc cgaggccgac gcccggatct cgctcgcccg ctatgagcag
      361 actgtgctca aggccttcgt gcaggtctcc gacgtgctct ccaacctggg cagcgaccaa
      421 caggcgatcg actcgctgaa ggtggccaac caggccgccg aggccggcgc ggcggacgcc
      481 cagaacgcgc tgcgcctggg gggcggaccg atgctcgatg tggtgcaggc ccagcgcacg
      541 ctcagccgcg cccgccgcgc cctggtggag gcgcagggcc gccggatgag cgacctggtg
      601 gagctctacg ccgccacggc ggcggactgg cggacggcga gctaggcgtt catcgcgtcg
      661 cggtgagctt tgctgtgggt ctcggccagc aggaacaccg agaccagcga gaccaggcag
      721 agcaccacca tgtaggccgc gatcgccccg gaggcgtgat agtgggcgaa cagggccgta
      781 gcgatgaggg gcgcgaagcc gccgccgaag atggcgccga tctggtagcc caatgaagcg
      841 ccggaatagc ggaactccgt cgagaacagc tcggtcatca aggccgcctg acacccgtac
      901 atggtcgagt tgaagatcag cccgccggcc agcgcggcca gcatcagcgg gaaggtggcg
      961 ctatccagca aatggaagaa cggccaggcc gaccacagcg cggccagggc ggcgccggtc
     1021 atgaagaccc cgcgtcgtcc cacccgatcc gacagccagg ccgtgatcgg caggacggga
     1081 gccgagagca tgctggcgat caccaccgcc cacaggattg tggtcttggc gacatgcagc
     1141 gtcccggtcg tataggccac ggtgtaggtg atcatcagat agaaggtgcc attggcggcg
     1201 acaaaggcgc ccgcggccag caggatctct ttggggttct tggctagcac cttcaggatc
     1261 ggcgagccct gggctgcgcg gatcttggcc ttggcctggg cgagactgac gccggtctcg
     1321 gcggcgagcg cggcggcttc gtcctcgtgc ttcttcgcgg cgagcgcctg ggcggcctgg
     1381 aagtccgccg tgtcctcaag cttcagctga atgtagagcg ccagcccgac cagtacgacc
     1441 gacagcagga acggaacgcg ccacgcccag gcgaggaagc tgtccggcgg cacggtcgcg
     1501 cccatgatca ggaagatcgc gttgcccatg atgacgccga gcggaacgcc catttgggcg
     1561 aagctgccga agaatcctcg ccgattgggg ggcgcgtttt cgatggcgat cagcacggcg
     1621 ccgccccact ggccgcccac agccaagcct tggatgaagc gcaggaggat gagcagcagc
     1681 ggcgaaagca cgcccagggt ggcgtagccg ggcaacaggc ccacgctggt cgtcgccaga
     1741 cccatcatca aaagcgccgt caccagcgcc ttcttgcgcc cgacgcggtc gccgaagtgg
     1801 ccgaagatca caccaccgac cggccgggcg atgaagccca ccgcgaaggt cgagaaggac
     1861 gcgagctggg ccaccggaag cggcaggccg gcggcgaaga agatcttggg aaacaccagc
     1921 gccgcggcgg tgccgtagat gaagaagtcg taccactcga tgctggaggc cgcgagcgag
     1981 gtcagcgcga gcttggcgat gttgatcttg gcggcaggcg cgccggcggc tgcggtcatg
     2041 gtgtccctct ccacggattg cgcggcgttg tcccgcgctt ggaagaaggg gtaccccagt
     2101 tcctcccccg agcgaagacc cgggggaggt gttcggaaat caggcgtgcg gccgcgcgcc
     2161 ctcgctggct tcggcggcca gccggccggt gagttcggcc atgtggtcga agtcggcctc
     2221 gaaggcgccc aggccctggg tcaggccccg cagttcggcg atcaggtcct ggcgttccga
     2281 ctgcggcaga taggcctcga tgcgctccca gccgcgccaa tcctcgcggg gcgcgaggcc
     2341 gaggatctgg ccgcgccggg cggtgagcgc ggaggtgacg ttggaggcgc tgggcgaggg
     2401 cgaatagacc gtcagcttct cgatcggctc cagcaggatg gcgccgcagc gcggcaggcc
     2461 ctcgtcaatg gccaggcgcc ccgccatgcg gaaggccatt tcggaggagt cgacactgtg
     2521 ggtctggcct tcgagcagga tgacctccag gtcggtgacc gggaatccga gctggccttt
     2581 ctccagcccg tcacggacgc cctgctcgac ggcggggatc cactgcttgg gcaccgagcc
     2641 gccgaccacc ttctggctga agaccaagcc cgagccgcgg ggcaggggcc ggatctccac
     2701 ggtgacgtcg gcgaactggc cgtggccgcc ggactgcttc ttgtgccgcg aacgctgggt
     2761 ggcgccgcgc tggatggtct cgcggtaggg ggtcttcggc tgctgggttt cgatctccag
     2821 cccgaagcgg cgcttcagcc gctccagcgc cagccgtacg tggccgtcgc cctggccggc
     2881 gagcagcatc tggtggcctt ccggatcatg ggtcaggcgc aggcccgggt cctcctcgat
     2941 cagcttggcg agcgcgccgg agagccggac gtcgtccttg cggtttgtgg ccgacagcgc
     3001 cacggcgtag agcggtcggc gcgcgctaga cgccgccgcg accgcctgcg gacgtccggt
     3061 ggtcgacaga atctgtccgg cctgggccgc ctccaccttg ccgatggcgc aaacctcgcc
     3121 gatgggcgcc gaggcgatct tcttgagggc cgcgccctgg acggcgaaga gcccgccggc
     3181 ccggcagcgt tccccgtccg gcagcacgaa atcggcgccg tccggcaggc ctttgccgaa
     3241 cacccgggcg taggcgagct ttcccgattg gccggcgtag gccgccttca gcacataggc
     3301 gccggcctcg acgcccaggc gtttggcggc gcggtcgggg agcggggctt cgtggcggag
     3361 cgccttcagg aggcggcgca cgccgaagcc gttctgcgcc gagccgaaga acacaggcac
     3421 gatcaggccg tcgttcatct cgcgcaccag atcggcgaag acggcgtcgc ggctggggac
     3481 cacgtcggag agaagttgct ccaggagctc gtcgtcgaag tcggcgatct gttcgagcat
     3541 gtggaaacgc gcgtccgctt cggcgtcgcg cagctcgccg gggatttcca cctgggttga
     3601 gggctcgttc ggccggtaga cgaaggcgcg ctccagcgcc aggtcgatga agccagaaac
     3661 cttctcgccc tcccaggtcg ggatctggcg ggcgaccaga ggcgcggagc tgacgggcgc
     3721 caacgcggcc aggagctcgg gcagggagcc tcgggccagg tccatcttgt tgacgaagag
     3781 ggcgtggggg atgcccaggc gctcaagctc gcgcagggtc ggctgcagca gggccgcctt
     3841 ggccgggtcg ggctcggcca cgaccacggc caggtccacg gccggcaggg ccgcgtccag
     3901 atcggcgcag aattccaggg agcctgggca atcgacgacc gaatag
//
LOCUS       DATAJL010000123         8967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_53286,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000123 DATAJL010000000
VERSION     DATAJL010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8967
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53286"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            312..1067
                     /locus_tag="VHN39_02265"
     CDS             312..1067
                     /locus_tag="VHN39_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEX2815189.1"
                     /translation="MTLVTGAFIIVMSFLTAALSGVFGMAGGLLLKGALALVLPVSAT
                     FVVHGMLQLVANAWRAILHRKFVDLKIVGLFALGSFAAGGVMAYVALEPTKATLYLLM
                     GLVPGLVWLPEGWIKVDASRPGQALFAGFIVTGTNLTAGVAGPLLDVFFVRTALTRHQ
                     IVATKAATQVFSHIMKIVVYGAPLLATGGKGVPPLWVFAFAIPLSMLGTAAGGVVLNR
                     LSDVNFKRYLRLILTVIGAAYLAQAARLYLGWG"
     gene            1263..1793
                     /locus_tag="VHN39_02270"
     CDS             1263..1793
                     /locus_tag="VHN39_02270"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003165275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX2815190.1"
                     /translation="MAAVHREDLRAACDADPSTWTDLYPYSLAGEHFDTGWARFYAEP
                     GADRINHAVTVGGRCVGVSSYLTIDPANGSLEIGGTYYHPDVRGGAVNPATKRLLMGH
                     AFESGARRVQYKVDAINARSRAAVLKLGATQEGILRADRVTWTGRIRDTVVFSILAEE
                     WPAVRERLDARLAGFG"
     gene            1930..3510
                     /locus_tag="VHN39_02275"
     CDS             1930..3510
                     /locus_tag="VHN39_02275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815191.1"
                     /translation="MAGGWSTQSRVDDLDDIDSWMAQRNADAGLRQQANAVGRDLWNQ
                     ATCDGTDLAAPQSSDLTAIGMAALGGSSASDALTSGSSDVSAPIASNAAGRPNSEEQG
                     YGIITARPGDSISRLLGTSRPEAIGRFASLNGLDGSTLKVGSSYRVPTTYDDATPDEI
                     AVGNQLLRSDNARLAAAHASAANDAQTNLFAQRLNSGLNLWTGEAPDYAPTLHSAARP
                     DQQPWWSTPVKALAGTVAFAAGLPVGLVRGGVHLGQGIGDGLDFSARLLDPHDAENHL
                     PGESAWDQVADRGRGVLRYGQQRLTDPGKLADDVSGLAHEARVALDLFPIAPTVGDQI
                     RHSFSVGENGGEGGFDVGTLWDGGGLVNGLRGAEVASDATKAARYLRPGAHPELAAYL
                     AEPYPGVGAHFVPRRAKFPEAIMGVPLPEGLVGKPLLPRAYMDSPFNVWKPDGISRGD
                     FYAGHFRRDDQMYGARLPKDVDGGRGWSGNRVGLQRYSPVGRIWHGAPSPLKAAAGAG
                     SATLGLGTYDYLNEGVPE"
     gene            3507..4229
                     /locus_tag="VHN39_02280"
     CDS             3507..4229
                     /locus_tag="VHN39_02280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815192.1"
                     /translation="MTVTPWAGFIADFPDDQVEGGGRRMEVLGGRNVAVALGEMLIGL
                     GCQVSTLDYAGLKGWEFELYYQRHRFWCQVTSFHPAFYLLFDDPAITRATRAKNAAAY
                     AEIWRKLADALEQDPRFHDVEWRSMEDGPPEPEQIGEASAREGVAGIPLEPLKPTLRP
                     EPIPRRSSYLGCLPMMVAASGGMVGAAGGIGGVIGLVLGRSGAAIQALLGVVIFCLSA
                     LSFWALLRGPRRRKVAASDQTT"
     gene            complement(4286..5053)
                     /locus_tag="VHN39_02285"
     CDS             complement(4286..5053)
                     /locus_tag="VHN39_02285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2815193.1"
                     /translation="MTALDAVPKMTFTRLVGAYLSDAKYESIRLFRTPAFSIPILAMP
                     VLFYSFFGVILSGGKAIHIANQLFVGWTVYGVMGPGLFGFGILVAVERNQGLLTFKRA
                     LPMPTGSYLGSKLVMALVFAVVVMAMLAFVGITIGHTTFDALTMLRVTSVMALGVIPA
                     CAVGLFIGAFAPASSAGAFANITYLGMAFLSGLFFPLSGFLHDIRAVWPTYHLVQIAQ
                     AAAGMPSQGSVLSHVAILAAMSAVLTAIAARRIARRG"
     gene            complement(5050..5958)
                     /locus_tag="VHN39_02290"
     CDS             complement(5050..5958)
                     /locus_tag="VHN39_02290"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2815194.1"
                     /translation="MKPEGKIQSGALARLSGVEKRYGETVALNGLDLEVRCGELLAVL
                     GPNGAGKTTAIALMLGLQTPDKGEVTLFGLSPHDLSARRGVGLMMQEVALADALKVRD
                     HIAMTQAYYPDPLNLDEAIALAGVEKIANRPYAKLSGGQKRQAQFALAICGRPRLLFL
                     DEPTTGLDLNARENMWASLRRMVAAGTSIVLTTHYIEEAEALADRVVVMAKGRAVAEG
                     TVEEMRAIVVRKRIDCVTTIAVGAIEAWTGVTAVTSADGRVSITTTDAEATVRMLLAD
                     PGLADLEVRRAGLSDAFAELTQEPAE"
     gene            complement(6065..6940)
                     /locus_tag="VHN39_02295"
     CDS             complement(6065..6940)
                     /locus_tag="VHN39_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815195.1"
                     /translation="MAGLLDGKVAIITGAGNGLGEAYAKLFAKEGASVVVNDLGGARD
                     GTGGDRSAAQKVVDAIEAAGGKAVANGDDVSTVQGGENILKAALDSFGKVDILVSNAG
                     ILRDKTFANTSEADWDAVVKVHLKGTYCVALPVWKFMKDHGGGAMVLTSSTSGLYGNF
                     GQANYGAAKAGIYGMMRVMAIEGRKYNIRVMGLAPGAYTRMTSDLPGRIGKEPDPLSL
                     PENVAPGVLYMVSDLAADHSGKVLGVSSRGVREIKMLQTGGFQPGRPYTAQEVAEHAS
                     EVFFPNAEERTAATA"
     gene            complement(7013..7483)
                     /gene="tadA"
                     /locus_tag="VHN39_02300"
     CDS             complement(7013..7483)
                     /gene="tadA"
                     /locus_tag="VHN39_02300"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008251 - tRNA-specific adenosine
                     deaminase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0002100 - tRNA wobble adenosine to inosine
                     editing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HEX2815196.1"
                     /translation="MRIVDHDHRTMRIALEAAQAAAGRGETPVGAVVVDPASGAVIAI
                     GANGPIGAHDPTAHAEIVAIREAAAKLGNYRLTGLTLVVTLEPCAMCAGAISHARIGR
                     LVFGAEDPKGGAVVNGPRFFEQPTCHSRPTVTGGVLADESSALLKNFFQARRGR"
     gene            7583..8332
                     /locus_tag="VHN39_02305"
                     /pseudo
     CDS             7583..8332
                     /locus_tag="VHN39_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918119.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
     gene            complement(8584..>8967)
                     /locus_tag="VHN39_02310"
     CDS             complement(8584..>8967)
                     /locus_tag="VHN39_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815197.1"
                     /translation="LQDQGDHPGHDALFLAGAGACAYGSVHPLIGVSLGWIAAVLAVT
                     TAYVRELGRGLGLPADFSGPMAKPQRMATLTVTCVIAAFEPLWGGRGEIILVGLAIIV
                     LGTALTVARRTRTIARALAERGKAP"
BASE COUNT         1465 a         2947 c         3083 g         1472 t
ORIGIN      
        1 ggctcatggt gctcgacacc gtgaccggga gccccgccga ttttctctat gaaaagcggg
       61 gatggacccg agccggcgtg atcccggact acgccctcta tcctgatggc gcgctctgcg
      121 acgccacctt cttctacaaa gcgctcgacc gatgacggtc cagttctttc tgacaagagc
      181 ccggccgcga gcggccgttg gccccagccg gacggccggc cccttctggc gcacgtcgcg
      241 tcgcagatcc gcggacggag gggcctgtgt ccccttcgcg aggcgggtcg caactccgaa
      301 ggaatacctc catgactctt gtgaccggtg cgttcatcat cgtgatgtcg ttcctgaccg
      361 cggcgctctc cggcgtcttc ggcatggccg gcggcctcct gctcaagggc gcgctcgccc
      421 tcgtcctgcc ggtttcggcc accttcgtgg tccacggcat gctgcaactg gtcgccaacg
      481 cctggcgggc gatccttcac cgtaagttcg tcgatctgaa gatcgtcggc ctcttcgccc
      541 tcgggtcctt cgcggccggg ggcgtgatgg cctatgtggc gctggagccc accaaggcca
      601 cgctctacct actgatgggc ctggtccccg gcctcgtctg gctgccggag ggttggatca
      661 aggtcgacgc ctcgcggccc gggcaggcgc tgttcgcggg cttcattgtc accggcacca
      721 acctgaccgc cggggtcgcc gggccgctgc tcgacgtctt tttcgtgcgc acggcgctca
      781 cccgccacca gatcgtcgcc accaaggccg cgacccaggt cttcagccac atcatgaaga
      841 tcgtcgtcta tggggcgccg ctgctggcca ccggcggcaa gggcgtgccg ccgctctggg
      901 tcttcgcctt cgccatcccg ctctccatgc tgggcacggc ggcgggtggc gtggtgctca
      961 accggttgag cgatgtgaac ttcaagcgct acctgcgtct gatcctgacg gtgatcgggg
     1021 cggcctatct ggcgcaggcc gcacggctct atctgggttg gggttgaggc caaaaaaaga
     1081 ggccgggtgc gaacacccgg ccctttgaag tttagggagg aaacgcccag gaatgggcaa
     1141 tcctcaggta tgtgcggatt gcggcgttgc aagggcttcg ccgtaacttt ttgacgtcgg
     1201 gtgatgaaaa gatgcaggtc gagccgaagg ttctggaaga ccgcttcgtg agattggagc
     1261 ccatggcagc cgtccatcgc gaggacctgc gtgcggcctg cgacgccgat ccgtcaacct
     1321 ggaccgacct ctatccctat tcgctggcgg gcgagcactt cgacaccggc tgggcgcggt
     1381 tctacgcgga gccgggcgcc gaccggatca accatgcggt gacggtgggc ggacgttgcg
     1441 tcggcgtgtc gagctatctg accatcgatc ccgccaacgg ctcgcttgag atcggcggca
     1501 cctactacca ccccgacgtt cgcggcggcg cggtgaaccc ggcgaccaag cggctcctga
     1561 tgggccacgc cttcgagagc ggggccaggc gggtgcagta caaggtcgac gccatcaacg
     1621 cgcgcagccg cgccgcggtt ctgaagctgg gcgcgaccca ggagggcata ctgcgcgccg
     1681 accgggtgac ctggaccggc cgcatccgcg acacggtggt gttctcgatc ctggccgagg
     1741 agtggccggc cgtgcgcgag cgcctggacg cgcggctggc gggattcgga tagcgccttc
     1801 gccggcgcac caacgcaata tgttcttatt ttgttcttgg tcgttagaga gagatgtggc
     1861 atgatggacg tgcgacggat gacttggtga gacatcctcg ctcggtcgcc gtgtcaaagg
     1921 gaggacggca tggctggggg ctggtcgacg caatcacgcg tcgacgattt ggacgacatc
     1981 gacagctgga tggcgcagcg gaatgctgat gccgggctgc ggcaacaagc gaacgccgtc
     2041 gggcgcgatc tctggaatca agccacgtgc gatgggaccg acctagcggc gccccagtct
     2101 agtgatctga ccgcgattgg aatggcggcg ctcggcggca gctcggcgtc cgacgccctc
     2161 acctcgggca gttcggacgt gagcgctccg attgcttcta atgcggcggg ccgtcccaac
     2221 tctgaggagc agggctacgg tatcattaca gcacgacctg gagacagtat ttcgcggctg
     2281 cttggcacga gccgcccaga ggcgatcggt cggttcgcca gtctgaacgg cctcgacggc
     2341 tccacgctta aggttggctc cagctaccgc gtcccgacga cctatgacga cgcgacgcct
     2401 gacgagatcg cggtcgggaa ccaactcctg cgatcggaca atgcgcggct cgcggcggcc
     2461 catgcttctg cggcgaacga cgcccagaca aatctcttcg ctcagcggct gaactcgggg
     2521 ttgaacctct ggaccggcga ggcgcccgac tatgcgccga cgctgcattc tgcggctcgg
     2581 cccgaccagc aaccttggtg gagcacgcct gtaaaggcgc tggctgggac tgtagccttc
     2641 gcggcgggcc tgccggtcgg cttggttcga ggcggggtgc atcttggtca gggtatcgga
     2701 gacggcctgg acttcagcgc gcgtcttctg gatccccacg atgctgaaaa ccacctgccc
     2761 ggcgagtccg cttgggacca agtggcggat agagggcgag gcgtcctcag gtacggccaa
     2821 caacgcctaa cggaccccgg caaacttgct gacgacgtca gtggattagc ccacgaagcc
     2881 cgcgtcgctc tcgacctttt cccgatcgcc cccactgtgg gggatcagat tcgccacagt
     2941 ttttcggtcg gcgaaaacgg gggcgaaggc ggttttgatg tcggcacgct ctgggacgga
     3001 ggcgggctcg tcaacgggct tcgaggcgcc gaagtcgcgt ccgatgccac caaggccgcc
     3061 agatatctta ggccgggggc tcatcccgaa ctcgccgcct atcttgcgga accctaccct
     3121 ggcgtggggg cacacttcgt gccgcgccga gcaaagtttc cagaggctat tatgggagtc
     3181 cctctcccgg agggcctcgt cggcaagccg ttgttaccgc gggcatacat ggacagccct
     3241 ttcaacgtgt ggaagccgga tggaataagc cgaggcgact tctatgcggg gcatttccgc
     3301 cgtgacgacc aaatgtacgg cgcgcgattg ccgaaggacg tggacggcgg gcgaggctgg
     3361 agcggaaata gggttgggct tcagcgatac agtcctgtgg gccgcatttg gcacggcgca
     3421 ccgtcgccct tgaaggcggc ggctggcgcc ggatcggcaa ctctgggact cggaacctac
     3481 gactatctga atgaaggcgt ccccgaatga ccgtcacgcc gtgggccggg ttcatcgcgg
     3541 actttccgga cgatcaggtt gagggcggcg gtcgccggat ggaggttctt ggcggccgga
     3601 acgtcgcggt ggcccttggc gaaatgctga tcgggctcgg gtgccaggtc tcgacgctgg
     3661 actacgccgg gctgaaaggc tgggagtttg agctctacta ccagcgccac cgcttctggt
     3721 gccaggtcac ttcgttccac ccggcattct atcttctgtt cgacgacccg gcgatcacgc
     3781 gcgcgacgcg ggcgaagaac gcggccgcct acgccgagat ctggcggaaa ctcgccgacg
     3841 cgctcgagca ggatcctcgc ttccatgacg tcgagtggcg atcaatggag gacggcccgc
     3901 cggagccgga gcagatcggc gaggcgagcg ctcgcgaggg tgttgccgga atccctctgg
     3961 aaccgctgaa gccgacgcta agaccagagc ctatccccag acgcagtagc taccttggct
     4021 gcttgcctat gatggtggcc gcctccggag gcatggttgg agcagcaggc gggatcggcg
     4081 gagttatcgg tcttgttctg ggaagatctg gcgccgcgat ccaagcgctt ttgggtgtcg
     4141 tcatcttttg cctgagcgct ctcagcttct gggccctttt gcgcggccct agacggcgta
     4201 aagtcgccgc aagtgatcag accacctgat aaactggcta agccggcgcc ttcccacccg
     4261 tcctggcgtt ctttccggtt cctcgctagc cccgccgcgc gatccgccgc gccgcgatcg
     4321 cggtcagcac cgccgacatc gcggcgagga tcgccacgtg gctcagcaca gaaccctggc
     4381 tcggcatgcc ggctgccgcc tgggcgatct ggacgaggtg ataggttggc cacacggccc
     4441 ggatgtcgtg caggaagccg ctcaagggga agaacaggcc cgacaggaag gccatgccca
     4501 gataggtgat attggcgaag gcgcccgcgc tggaggccgg ggcgaaggcg ccgatgaaga
     4561 ggcccaccgc acaggccggg atcaccccca gcgccatcac cgaggtcacc ctcagcatcg
     4621 tcagcgcgtc gaaggtcgtg tgcccgatgg tgatacccac gaaggccagc atcgccatca
     4681 ccaccacggc gaagaccagc gccatcacga gcttcgagcc cagataggag ccggtgggca
     4741 tgggcagcgc gcgcttgaaa gtgagtaggc cctggttgcg ctccaccgcc accaggatgc
     4801 cgaagccgaa caggcccggg cccatcacgc catataccgt ccagccgacg aacagctggt
     4861 tggcgatatg gatggccttt ccccccgaca ggatcacgcc gaagaacgag tagaacagca
     4921 ccggcatggc caggatcggg atcgagaagg caggcgtcct gaacaggcgg atggattcgt
     4981 atttggcgtc gctcagatag gcgccgacca ggcgggtgaa ggtcatcttc ggcacggcgt
     5041 cgagggcggt cattccgcgg gctcctgcgt gagttcagcg aaggcgtcgg agaggccggc
     5101 gcggcggact tcgagatcgg cgagaccggg atcggccagc agcattcgca cggtggcctc
     5161 ggcgtcggtg gtggtgatgg aaacgcggcc atcggcggag gtgaccgcgg tgacgccggt
     5221 ccaggcctcg atggccccca cggcgatcgt ggtgacgcag tcgatgcgct tgcgcaccac
     5281 gatggcccgc atctcctcga cggtgccctc ggccacagcg cggcctttgg ccatgaccac
     5341 gacccggtcg gccagcgcct cggcttcctc gatatagtgg gtggtgagca cgatcgaggt
     5401 cccggccgcc accatccggc gcaggctcgc ccacatgttc tcccgcgcat tgaggtcgag
     5461 gccggtggtg ggctcatcca ggaacagcag gcgcggccgc ccgcaaatgg ccagggcgaa
     5521 ctgcgcctgg cgtttctggc cgccggagag cttggcgtag ggccggttgg cgatcttctc
     5581 cacgccggcc agcgctatgg cttcgtcgag gttcaggggg tccggatagt aggcctgggt
     5641 catggcgatg tggtcgcgga cctttagcgc gtcggcgagt gcgacttcct gcatcatcag
     5701 gccgacgccg cggcgcgccg acagatcgtg cggcgagagg ccgaacagcg tgacctcgcc
     5761 cttgtccggc gtctgtaggc ccagcatcag ggcgatggcg gtggttttgc ccgcgccatt
     5821 ggggccgagc accgccaaga gttcgccgca gcggacctcc aggtcgagcc cgttcagggc
     5881 gacggtttcg ccatagcgct tctcgacgcc gctcagccgc gccagcgcgc cgctctggat
     5941 tttgccttca ggtttcatcg ccgcccctca tgcgcatacg cccctagtcg ccgccgaagc
     6001 cgccaccgga tgcagttagc ccagagagct ttaatttgta aagtaatctt tgtggcggag
     6061 cgtcctaggc cgtcgcggcg gttcgttcct cggcgttggg gaagaagacc tcggaggcgt
     6121 gctcggccac ctcctgggcg gtgtagggcc ggcccggctg gaagccgccg gtctgcagca
     6181 tcttgatctc gcgcacgcca cggctggaga cccccagcac cttgccggaa tggtcggcgg
     6241 ccaggtcgga gaccatgtag agcaccccgg gcgccacgtt ctccggcagg ctgagcgggt
     6301 cgggctcctt gccgatccgg ccgggcaggt ccgaggtcat gcgggtgtag gcgccgggcg
     6361 ccaggcccat gacccggatg ttgtacttgc gcccctcgat ggccatcacc cgcatcatcc
     6421 cgtagatgcc ggccttggcg gccccgtagt tggcctggcc gaaattgccg tagaggccgg
     6481 aggtcgacga ggtcaaaacc atcgcgccgc cgccgtggtc cttcatgaat ttccagaccg
     6541 gcagggcgac gcaataggtc cccttcaggt gcaccttcac caccgcgtcc cagtcggcct
     6601 cggaggtgtt ggcgaaggtc ttgtcgcgca ggatgccggc gttggagacc aggatgtcga
     6661 ccttgccgaa gctgtccagc gcggccttca ggatgttctc accgccctgg acggtggaga
     6721 cgtcgtcgcc gttggccacg gccttgccgc cggccgcctc gatcgcatcg accaccttct
     6781 gagccgccga gcggtcgccg cccgtgccgt cgcgcgcgcc gcccaggtcg ttgacgacga
     6841 ccgaagcgcc ttccttggcg aacagcttcg cataggcctc gcccaggccg ttgccggctc
     6901 ccgtgatgat cgcaaccttg ccgtccagca aacccgccat agccgacctc ccaatggttc
     6961 tttgaattta tgggaagcat cttccgaccg cagtcggccg cttggcaagc cgtcagcgtc
     7021 cgcggcgggc ctggaagaag ttcttcagca gggcggaact ctcgtcggcc agcaccccgc
     7081 cggtgacggt tgggcgcgag tggcaggtcg gctgttcgaa gaacctgggg ccgttgacca
     7141 ccgcgccgcc cttcggatcc tcggcgccga acaccaggcg gccgatccgg gcgtggctga
     7201 tcgcgccggc gcacatggcg cagggctcca gggtgacgac gagggtcagg ccggtcaggc
     7261 ggtagttgcc gagcttcgcg gcggcctcgc ggatcgccac gatctcggcg tgggccgtcg
     7321 ggtcgtgcgc gccgatcggg ccgttggcgc caatggcgat caccgcgccg gaagccggat
     7381 cgaccacgac cgcgcccacc ggcgtctcgc cgcgcccggc ggcggcttgc gcggcctcaa
     7441 gggcgatgcg catggtgcga tggtcatggt ccacaatccg caccgaaccg gcgaccaccc
     7501 ctccggtcaa ccccgcacgc cgcaagccgg agcctctccc gaggctgcca aggacgttgg
     7561 aggcgccgaa tctggaggag ggcgcgtggc caagatgctg gcccgcgccg gggtggcgtc
     7621 acgccgcgag gtggagcggc tgatcgaggc cggccgggtg gcgctgaacg gccaggtgct
     7681 gaccacgccg gcggtcaagg tcgaggccgg cgacatcctg acggtggacg gcgcggtggt
     7741 caccgaggcg gagccggcgc gcctcttccg ctaccacaag cccatcgacc tggtgaccag
     7801 ccactccgat accaaaggcc gcccgacggt cttcgaggcc ctgccgccag gcctgccccg
     7861 gctgatctcg gtgggccgcc tggacattaa ttccgagggc ctgctgctgc tcaccaacga
     7921 cggcggcctg gcccgcgccc tggagatgcc cacgacgggg atcgtccgcc gataccgcgc
     7981 ccgggcacgg ggccgggtga cgcaggagcg gctggatacg ctcaagaagg gcatcacggt
     8041 cgagggcgtc cactacggct cgatcgacgc caccctggac aaggccaagg aaggtccgca
     8101 gggcgcgaac ctgtggatca ccgtcgtcct ggcggagggc aagaaccgcg aggtccgccg
     8161 cgtcctcgaa gtgctgggtc tgaaggtgaa ccgcctgatc cgcctctcct acggcccctt
     8221 cgcactcgga accctgctgc ccggcgaggt cgaggaggtg ggtccccggg tgatccgcga
     8281 gcagatggcc gagcacatcg cgccggccaa cctgcccaag ggcgaccggc cgctttggaa
     8341 gaagccggcg gcggtgatcg cgggaccaag acgcggtgcg gtggagattg accggcctgg
     8401 caagcctggg cgtccgggca aacctcagcg ccgtccgcgc aaggcgccga ccggcgaagc
     8461 tccgccgaag aaggaataca aggccggctg ggccaagccg aagcccaagc cgaagatcgt
     8521 caagacatcg gggcccaagc gacactcagg cgcggcgcga aagacgcgca ccccgaagcg
     8581 gccctaaggg gccttgccgc gctcggcgag ggcgcgggcg atggtgcggg tgcggcgcgc
     8641 caccgtcagg gcggttccca gaacgatgat ggccaggccc acgaggataa tctcaccacg
     8701 cccgccccac aggggctcga aggccgcgat gacgcaggtc accgtcaggg tcgccatccg
     8761 ctgcggcttg gccatcgggc cggagaagtc ggcgggcagg cccaggccgc gtcccaactc
     8821 gcgcacatag gcggtggtga ccgccaggac ggcggcgatc cagcccaggc tgacgccgat
     8881 cagcggatgg accgagccat aggcgcaggc gcctgcgccg gcgaggaaca gggcgtcatg
     8941 tccggggtga tcaccctggt cctgaag
//
LOCUS       DATAJL010000124         2952 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40688,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000124 DATAJL010000000
VERSION     DATAJL010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40688"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..685
                     /locus_tag="VHN39_02315"
     CDS             <1..685
                     /locus_tag="VHN39_02315"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815198.1"
                     /translation="LTDALRQKLGKRKIVLLGLSFGSALAARLAHDHPDRYSAYVAAG
                     QIADPRIVRETAAIEYVRTLAQSRGDQAALADLKVAGPHPFGDSPRDPDKVAAFMRGS
                     TPFRPRVPADQRRDVLSAPHWSITDALALRIGQDASEAKFGKAWAEGYDYAGLRGAYR
                     VPVFLIQGDNDFDAPLNLSKVWLDQIRAPAKSVTVVPGAGDHAIQTDPEVYAKVLRDQ
                     VRPWAVKAQ"
     gene            complement(719..1408)
                     /gene="phoB"
                     /locus_tag="VHN39_02320"
     CDS             complement(719..1408)
                     /gene="phoB"
                     /locus_tag="VHN39_02320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HEX2815199.1"
                     /translation="MTPHILVVEDEDSLATLLQYNLQKEGYDVALAGDGEEALLLVDE
                     RLPDLMVLDWMLPKVSGIEVCRRLRQRNETRNLPIIMLTARGEETDRVRGLDTGADDY
                     VVKPFSMTELTARIRAVLRRLRPGLAEDRVRRGDILIDRVAHRVKRAGAEIHLGPTEF
                     RLLDYLMQHPGRVFSREQLLDAVWGSDVYVEARTVDVHIGRLRKALGVSETDDPIRTV
                     RSAGYSLDLEG"
     gene            complement(1425..2117)
                     /gene="phoU"
                     /locus_tag="VHN39_02325"
     CDS             complement(1425..2117)
                     /gene="phoU"
                     /locus_tag="VHN39_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0051049 - regulation of transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEX2815200.1"
                     /translation="MNEHIVKSYEDELNSLAAECVRMGGLCEALVADAVTGVVKRNQE
                     LAASVVVRDDKLDEAERDIERKTIRLIALRQPVADDLRRAVAAMKVANNLERCGDLAK
                     NIAKRTLVIIESDPLTPLTRSIERMGKLVLGRLSSVLDAYSRSDLERALAVWSQDDEV
                     DEHYNSLFRELLTYMMGDPRTITACAHMLFVAKNLERIGDHATNIAEIVHYEITGAEM
                     IGGRPKTDGLQV"
     gene            complement(2168..>2952)
                     /locus_tag="VHN39_02330"
     CDS             complement(2168..>2952)
                     /locus_tag="VHN39_02330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815201.1"
                     /translation="ADFLANASHELRTPLASLAGFIETLRGHAKDDPMAREKFLGIMQ
                     AQADRMARLIADLTSLSRIELDEHVPPRGVVDLVLLVGEVVEAATPLGAQRSVKLDWR
                     PCAACSVSVRGERDQIVQVVQNLLDNAIKYSPDGASVRIEMQSGLTDTAAAGVSTDVV
                     PRLSLVAPDPSPETYAVLRFTDLGPGIARQNLPRLSERFYRVDGQKSGARSGTGLGLA
                     IVKHIMNRHRGGLVVASAEGEGSTFTAYFPMAGAPEAVVKAS"
BASE COUNT          436 a         1010 c         1014 g          492 t
ORIGIN      
        1 actcactgac gcccttcgcc agaaactggg caagcgcaag atcgtgctgt tggggctgag
       61 ctttggctcg gccttggctg cccggctggc ccatgaccac ccggaccgct actcagctta
      121 tgtcgccgcg ggccagatcg ccgacccgcg gatcgtccgc gagaccgccg cgatagaata
      181 tgtccgcacc ctggcccaga gtcggggtga ccaggccgct cttgccgacc tgaaggtcgc
      241 gggtccgcat ccgttcggcg actcgccccg tgacccggac aaggtcgcgg ccttcatgcg
      301 cggttcgacc ccgttccggc cccgcgtacc ggcggaccag cgccgcgacg tgctgtcggc
      361 gccgcattgg tcgatcaccg atgcgctcgc gctgcggatc ggccaggacg cgagcgaggc
      421 aaagttcggc aaggcctggg ccgagggcta cgactacgcc ggtctgcgcg gcgcctatcg
      481 cgtccccgtc ttcctgatcc agggcgacaa cgacttcgac gcgcccctga acctctccaa
      541 ggtctggctt gaccagatcc gggcgccggc caagtccgtc accgtcgtac ccggcgccgg
      601 cgaccatgcg atccagactg accccgaggt ctacgcgaag gtgctgcgcg atcaggtgcg
      661 cccttgggcg gtcaaagccc agtaggctcc cgccggattc ggaggcgaac ctggaccgtc
      721 agccttccag gtccagcgaa taccccgccg aacgcaccgt gcggatcgga tcgtcggtct
      781 cggagacgcc cagcgccttc ctgagccgcc cgatgtgcac gtcgaccgtg cgggcttcca
      841 catagacgtc cgagccccag acggcgtcca ggagctgttc gcgggagaaa acgcggcccg
      901 ggtgctgcat caggtagtcg agcaggcgga actccgtcgg gcccaggtgg atctccgcgc
      961 cggcgcgttt cacccggtgg gcgacccggt cgatcaggat gtcgccgcgc cgcacgcggt
     1021 cttccgccaa gccggggcgc aaccggcgca gcaccgcgcg gatgcgggcg gtgagctcgg
     1081 tcatggagaa gggtttgacc acatagtcgt cggcgccggt gtcgaggcca cgcacccggt
     1141 cggtctcctc gccgcgggcg gtcagcatga tgatcggcag gttgcgggtc tcgttgcgct
     1201 ggcgaagccg gcggcagacc tcgatgccgg agaccttggg cagcatccag tccagcacca
     1261 tcaggtcggg cagccgctca tcgaccagca gcagcgcctc ctcgccgtcg ccggccagcg
     1321 ccacgtcgta gccctccttc tgcaggttgt actgcaggag ggtcgccagc gaatcttcat
     1381 cctcgacgac caggatgtgc ggcgtcatct gcatgggggc ggcctcagac ctgcagcccg
     1441 tcggtcttgg gccggccgcc gatcatctcc gcgccggtga tctcgtagtg gacgatctcg
     1501 gcgatgttgg tggcgtggtc gccgatccgc tcgaggttct tggccacgaa cagcatgtgg
     1561 gcgcaggcgg tgatcgtgcg cggatcgccc atcatgtagg tgagcagctc gcggaacagg
     1621 gagttgtagt gctcatcgac ctcgtcgtcc tggctccaga cggcaagcgc acgttccagg
     1681 tcggaccggc tataggcgtc gagcacgctg gacaggcgtc ctagcaccag cttgcccatc
     1741 cgctcgatgg agcgggtcag cggcgtcagc gggtcgctct cgatgatcac cagggtgcgt
     1801 ttggcgatgt tcttggccag gtccccacag cgttccaggt tgttggccac cttcatggcg
     1861 gccaccgcgc ggcgcaggtc gtcggccacc ggctggcgca gggcgatcag gcggatggtc
     1921 ttgcgttcga tatcgcgctc ggcctcgtcg agcttgtcgt cgcggaccac cacggaggcg
     1981 gcgagttcct ggttgcgctt gacgacgccg gtcacggcgt cggccaccag agcctcgcaa
     2041 aggccgccca tgcgcacgca ctcggccgcc aggctgttca gctcgtcttc gtaggatttg
     2101 acgatgtgct cgttcatctg gcctgccttg ggagcgcccg ttgctccagg gtccctatgc
     2161 tacagtctca tgacgctttg acgactgctt ccggggcccc cgccatggga aaataggcgg
     2221 tgaaggtcga gccctcgccc tccgcgctgg cgaccaccag gccgccccgg tggcggttca
     2281 tgatgtgctt gacgatggcc aggcccaggc cggtccccga ccgagccccg ctcttctgtc
     2341 cgtcgacccg atagaagcgc tcggaaagcc ttggaaggtt ctggcgcgcg atgccggggc
     2401 caaggtcggt gaagcgcagg accgcgtagg tctccggcga cggatcgggg gccaccagcg
     2461 acaggcgcgg cacgacgtcg gtgctcaccc cggccgcggc ggtgtcggtc aggccgctct
     2521 gcatctcgat ccgcaccgag gcgccgtccg gggaatattt gatggcgttg tccaggaggt
     2581 tctggaccac ctggacgatc tggtcgcgct cgccgcgcac gcttaccgaa caggccgcgc
     2641 agggccgcca gtcgagcttg acgctccgct gggcgccgag cggcgttgcg gcctcgacca
     2701 cctcgcccac cagcagcacc aggtcgacga cgccgcgcgg cggcacgtgc tcgtcgagct
     2761 caatccgcga gagcgaggtc agatcggcga tcagccgggc catgcggtcg gcctgggcct
     2821 gcatgatgcc caggaacttc tcgcgcgcca tcgggtcgtc cttggcgtgg ccgcgcaggg
     2881 tctcgatgaa gccggccagg gaggccagcg gggtgcgaag ttcgtggctg gcgttggcca
     2941 ggaagtcggc gc
//
LOCUS       DATAJL010000125         5127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_116843,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000125 DATAJL010000000
VERSION     DATAJL010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5127
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_116843"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1815
                     /locus_tag="VHN39_02335"
     CDS             <1..1815
                     /locus_tag="VHN39_02335"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEX2815202.1"
                     /translation="VLDNAMDEAVAGHAKVISVRLDADGMLTVIDDGRGIPVDPHPKH
                     PGKSALEVIMTVLHSGGKFSGKAYETSGGLHGVGVSVVNALSERVEVTAWKDGFEWRQ
                     AFTRGKPIGGIEKLGPTRKHGTAIAFNPDPVIFGEGVAFKPARLYRMARSKAYLFAGV
                     EIRWSCDLSRIQDQTPAEAVFRFPNGLADFLGERIKDIETVTPEPFAGRYSRPGESGK
                     VEWAIAWTPAGFGEADGFMQSYCNTVPTPEGGTHEAGLRAALTRGLKAYAELTGEKRG
                     IILTADDVLAQAGALVSIFVRDPEFQGQTKERLSSADAQRLVETALRDPFDHWLTAQP
                     KVASALLEFVIERAEERLKRRKDKEVARASATRKLRLPGKLADCSGNAIDGTEIFLVE
                     GDSAGGSAKQARDRKSQAILPLRGKILNVASATLDKMGANKELTDLLLALGVQAGSKF
                     KEEDLRYDRVVIMTDADVDGAHIASLLITFFYRTMPEMIRSGRLYLALPPLYRLSHGT
                     KIVYARDDAHRDELLAGEFKGKKPEISRFKGLGEMMPAQLKETTMDPSKRTLARVTLP
                     RAEEAVEALVEQLMGRKPELRFQFIQENAEFAVGDLDV"
     gene            complement(1846..3546)
                     /locus_tag="VHN39_02340"
     CDS             complement(1846..3546)
                     /locus_tag="VHN39_02340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815203.1"
                     /translation="MSRLARPDPYAPKQGRQCKAARATAAAQLGATDVSRDLTTFFEV
                     SLDMLCIRDRAFRFVKVNQAWEVALGYSIADLEGAPMLSFIHPDDASASHGHMQRLEV
                     EEEVFGFTNRYRHRDGNYRHLEWRARRVGDLVFGVARDVTERLAIEAEMLAARAAAEA
                     ANQSKSEFLANMSHEIRTPLNGVIGLAAALGRTDLTPGQREMVGLIETSGVTLERLVS
                     DVLDVSKIEAGRLEIETRAFDIRAETADLLEVYRRRAEDKGLSFDVEYGPHARGHFLG
                     DSVRLKQVLGNLLSNAVKFTAEGGISLRVHIRDAAPAGDATRLVLEVRDTGVGFDATF
                     AGDLFQRFSQADGTITRRFGGSGLGLSITRSLVELMGGEIRAESEAGQGSTFRVDLPL
                     VRHRPMADSDAAGALARTASLEASRMERLASLRILLVEDHPVNQRVVQLILGPFGVEL
                     VTAGNGVEALEAFSAGVFDLVLMDMQMPVMDGLSATRAIREREALTPGRARTPVLMLS
                     ANAMRQHQEAAAASGADGYLAKPVTVASLIDGIMDTLDTAGRPSMQDARSGVVARPPA
                     "
     gene            3624..3761
                     /locus_tag="VHN39_02345"
     CDS             3624..3761
                     /locus_tag="VHN39_02345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815204.1"
                     /translation="MIAWRGLRPALSPLERPLGETFQGKDAQIEAAVAELLKGLPKAI
                     R"
     gene            complement(3758..4258)
                     /locus_tag="VHN39_02350"
     CDS             complement(3758..4258)
                     /locus_tag="VHN39_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815205.1"
                     /translation="MKLGEVVMSTGASGVGRRLWVSLVAGLAAAVIEMVFVLPIQGKL
                     GASPVVVFQSIASGALGKAAFAGGLSTAALGVGVHVLISLVAAAVFVFAAGRWDILLR
                     RPFASGVCYGVAVYLVMNFVVIPLSTIGFSLPKSLGLFALSFGVHLFAFGLPIALVAR
                     AMLKPR"
     gene            4325..>5127
                     /locus_tag="VHN39_02355"
     CDS             4325..>5127
                     /locus_tag="VHN39_02355"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2815206.1"
                     /translation="MRLQTWISAACLAVSLALPLAAHAQSAGEDLFNGRCKSCHDPAI
                     DRAPNRATLATMPPATIVDTLTNGVMKPMAAGLSDADKQAVAAFLTTTTTAAARPQGR
                     PTPANVGVDVKCEVNPPIKATASDWTSVGLDRSHRYQANPGLTAADVPKLKVKWSFAM
                     SGGSMPTVIGDWLFITNRSGKFYALDPATGCVRWVVENAVSRTTPMIVKSDVSPSGWL
                     TMIGERTRTVRAFDAQTGKELWRSAPLHANPVVGITGSPVVSGDQVFVPL"
BASE COUNT          870 a         1855 c         1656 g          746 t
ORIGIN      
        1 gtgctggaca acgccatgga cgaggccgtc gccggccacg ccaaggtcat ctccgtgcgc
       61 ctcgacgccg acggcatgct gacggtgatc gacgatggcc gcggcatccc ggtggacccg
      121 caccccaaac atcccggcaa gtcggcgctg gaggtcatca tgaccgtcct gcattccggc
      181 gggaagttct ccggcaaggc ctatgagacc tccggcggcc tgcacggggt cggggtcagc
      241 gtcgtcaacg ccctctccga acgggtcgaa gtcaccgcct ggaaggacgg cttcgagtgg
      301 cgccaggcct tcacccgcgg caaacccatc ggcggcatcg agaagctcgg ccccacccgc
      361 aagcatggca ccgccatcgc cttcaacccc gacccggtga tctttggcga gggcgtggcg
      421 ttcaagccgg cacgcctcta ccgcatggcg cggtccaagg cctatctgtt cgcaggcgtc
      481 gagatccgct ggtcgtgcga cctctcccgc atccaggacc agaccccggc ggaggcggtc
      541 ttccgcttcc ccaacggcct ggccgacttc ctgggcgagc ggatcaagga catcgagacc
      601 gtgacgccgg agcccttcgc cggccgctat tcgcggcccg gcgagagcgg caaggtcgag
      661 tgggccatcg cctggacccc ggccggcttc ggggaggccg acggcttcat gcagtcctac
      721 tgcaacaccg tgcccactcc ggaaggcggg acccacgaag ccggccttcg cgcggcgctc
      781 acccgcggcc tgaaagccta tgccgagctg accggcgaga agcgcgggat catcctcacc
      841 gccgacgatg tcctggccca ggccggcgcg ctggtcagca tcttcgtccg cgaccccgag
      901 ttccagggcc agaccaagga gcgcctgtcc tccgccgacg cccagcgcct ggtggagacc
      961 gcgctcaggg accccttcga ccactggctg accgcccagc ccaaggtggc ctccgccctt
     1021 ctcgaattcg tcatcgagcg cgccgaggag cggttgaagc gtcgcaagga caaggaggtc
     1081 gcccgcgcgt cggccacccg caagttgcgc ctgcccggca agctcgccga ctgctccggc
     1141 aacgccatcg acggcaccga gatcttcctg gtggagggag actcggccgg cggctcggcc
     1201 aaacaggccc gcgaccgcaa gagccaggcg atcctgcccc tgcgcggcaa gatcttgaac
     1261 gtcgcctccg ccactctcga caagatgggg gccaacaagg agctcaccga cctgttgctg
     1321 gcgctgggcg tccaggccgg ctcgaagttc aaggaagagg acctgcgcta cgaccgcgtg
     1381 gtgatcatga ccgacgccga cgtcgacggc gcccacattg ccagcctctt aatcaccttc
     1441 ttctaccgca ccatgccgga gatgatccgg tccggccgcc tctacctggc cctgccgccg
     1501 ctctatcgcc tgagccacgg cacgaagatc gtctacgccc gcgacgacgc ccaccgcgac
     1561 gagctgctgg ccggcgagtt caagggcaag aaaccggaga tcagccgctt caagggcctg
     1621 ggcgagatga tgccggccca gctgaaggaa accaccatgg atccttccaa gcgcacgctg
     1681 gcccgcgtca ccctgccccg cgccgaggag gcggtggagg ctctggtcga acaactcatg
     1741 ggccgcaaac ccgaactgcg cttccagttc atccaggaaa acgccgagtt cgcggtgggc
     1801 gacctggacg tctgacggat cgggcgcggc gcgtcttccg aagcgtcagg cgggcggtct
     1861 cgcgacgacg cccgatcgcg cgtcttgcat ggatggtcgg ccggcggtgt ccagggtgtc
     1921 catgatcccg tcgatcagcg aggccaccgt gaccggtttc gccagatacc catccgcgcc
     1981 ggaggctgcg gcggcctcct ggtgctggcg catggcgttg gcgctcaaca tcaggaccgg
     2041 cgttcgggcc cgccccgggg tcaaggcctc ccgttctcga atggcccgcg tggcggagag
     2101 gccgtccatc accggcatct gcatgtccat cagcaccaga tcgaagacgc cggcgctgaa
     2161 cgcttcgagc gcctcgacgc cgttgccggc ggtcaccagc tccacgccga aggggccgag
     2221 gatcagctgg acgacgcgct gattgacggg atggtcctcc accaggagga ttcgcagcga
     2281 cgccagccgc tccatccttg aagcttccag cgacgccgtg cgcgccaagg ctccggccgc
     2341 gtcggagtcg gccatggggc gatgtcgcac cagtggcagg tcgaccctga atgtactgcc
     2401 ctgccccgcc tccgactctg cacggatctc gcctcccatg agttcgacga ggctgcgcgt
     2461 gatcgatagc cccagcccgc tgccgccgaa gcggcgggtg atcgtgccgt cggcctggct
     2521 gaaccgctgg aagagatcgc cggcgaaggt ggcgtcaaag cccacgccgg tgtcgcgaac
     2581 ctccagcacg agcctggtcg catcgccggc tggcgcggcg tcacggatgt ggacccgtaa
     2641 gctgatcccg ccctcggcgg tgaacttgac ggcgttggaa agcaggttgc ccagcacctg
     2701 cttcaagcgg acgctgtccc ccaggaagtg gcctcgcgcg tgggggccgt attcgacgtc
     2761 gaagctcagc cccttatcct cggcccggcg gcgatagacc tctagcaggt cggccgtctc
     2821 ggcgcggata tcgaaggccc gcgtctcgat ctccagccgc cccgcttcga tcttcgagac
     2881 gtccaggacg tccgagacca gtcgctcaag cgtgactccg gaggtctcga tcaggcccac
     2941 catttcgcgc tgcccgggcg tcaagtcggt ccggccaagc gcggcggcga ggccgatcac
     3001 cccgttcagg ggcgtgcgga tttcgtggct catgttggcc aggaattcgc tcttggattg
     3061 attggcggct tcggccgccg cgcgcgccgc cagcatctcc gcctcgatcg ccagtcgttc
     3121 ggtcacgtcg cgggcgacgc cgaacacgag atcgcccacc cggcgggcgc gccactccag
     3181 gtggcggtaa ttcccatcgc gatgacggta gcgattggtg aagccgaaga cctcctcctc
     3241 gacctccagg cgctgcatgt gcccatggct ggcggaggcg tcgtcgggat ggatgaagga
     3301 cagcatcggg gcgccttcca gatctgcgat cgagtagccc agcgcgactt cccacgcctg
     3361 gttcaccttc acgaagcgga acgccctgtc ccggatgcag agcatgtcga gggacacctc
     3421 gaagaaggtc gtcaggtccc gcgaaacatc ggtcgcgccc agttgcgccg ccgctgtcgc
     3481 ccgggcagcc ttgcattggc gcccctgttt cggcgcgtat ggatcggggc gggctaagcg
     3541 gctcatactg ggggcggctc ccatgcgccc ccgcgaactc tgcgcgccga ggagtagcag
     3601 gacgttaacg cgcccgcgat cgagtgatcg cctggcgtgg cctcaggcct gctctatcgc
     3661 cactggagcg accgttgggc gagaccttcc agggcaagga cgcccagatc gaggccgcgg
     3721 tggccgaact gctgaaaggc ctgccgaagg ccattcgcta gcgcggtttc aacatcgcgc
     3781 gggcgaccag ggcgatcggc aggccaaagg cgaagagatg cacgccgaaa ctcagggcga
     3841 acagcccgag cgatttcggc agcgagaagc cgatcgtcga cagcgggatg accacgaagt
     3901 tcatcaccag atagaccgcc acgccgtagc agacgccgct ggcgaagggc cgtcgcagga
     3961 ggatgtccca gcggcccgcc gcgaagacga acaccgccgc ggcgaccagc gagatcagca
     4021 cgtgaacgcc cacgcccagg gccgcggtgg agagcccgcc cgcgaacgcc gccttgccca
     4081 gcgccccgct ggcgatcgac tggaacacca cgaccggaga ggcgccgagc ttcccctgga
     4141 tgggcaacac gaacaccatc tcgatcaccg ccgccgcgag acccgccacc agcgagaccc
     4201 acagcctgcg cccgaccccg ctcgcacctg tcgacatcac cacctccccc agcttcaccg
     4261 ccgcgtcttg ccgcgccgcg caacgcccgc cacagtgaaa gaaaacacct ggggaggcta
     4321 tggcatgaga ctgcaaacct ggatttccgc cgcgtgcctg gccgtgagcc tcgccctgcc
     4381 gctcgccgca cacgctcaga gcgctggcga ggacctcttc aacggccgct gcaagagctg
     4441 ccacgacccg gcgatcgacc gggcgcccaa ccgggcgacg ctggccacca tgccgcctgc
     4501 caccatcgtc gatacgctga ccaacggcgt catgaagccg atggccgcgg gcctctccga
     4561 cgccgacaaa caagcggtcg cggccttcct gaccacgacg acgaccgccg ccgcccgccc
     4621 gcagggtcgg ccgacaccgg ccaatgtcgg cgtcgatgtg aagtgcgagg tcaatccgcc
     4681 gatcaaggcg accgcgtcgg actggaccag cgtcggcctc gaccgctcgc accgctatca
     4741 ggccaatccg ggcctcaccg ccgcggacgt gccgaagctg aaggtgaagt ggtcgttcgc
     4801 catgtccggc ggctccatgc ccacggtcat cggcgactgg ctgttcatca ccaaccggtc
     4861 cggcaagttc tacgcgctcg atccggccac cggctgcgtg cgctgggtag tggagaacgc
     4921 ggtctcgcgc accaccccga tgatcgtgaa gtcggacgtc tcgcccagcg gctggctgac
     4981 catgatcggc gagcgcaccc gcacggtccg cgccttcgac gcccagaccg gcaaggagct
     5041 ctggcgctcg gcgcccctgc acgccaatcc ggtggtcggc atcaccggct cgccggtggt
     5101 ctccggcgac caggtcttcg tgccact
//
LOCUS       DATAJL010000126         1634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_53349,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000126 DATAJL010000000
VERSION     DATAJL010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53349"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..957)
                     /locus_tag="VHN39_02360"
     CDS             complement(<1..957)
                     /locus_tag="VHN39_02360"
                     /inference="COORDINATES: protein motif:HMM:NF024748.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2815207.1"
                     /translation="MATAVVFMLAAGFGGGWWGATHSGVQKIAYTKGPAAPLKHVTPP
                     PAPEAFQAVIQKIATAYGEPVGISVSEVAQGWTAQVDGDITFPQQSVSKLWVALAVMQ
                     AVDDKRLSLDQTVVMGPEDRSVFYQPLASRIRGSRELSITVADLLRHALIESDNSAND
                     TLIREVGGPGVVTRAIADKGLTGLAVGGTEREVQTKTAGLEWRPEYGQTWIFKQARAA
                     LPDDVRDQALANYLANPPDGATPDGIVTALAALKRGELLSRASTDFMLDLMGEARTGA
                     LRMKAAVAPGWSLAHKTGTGPDWRGASVGINDVGLMTAPDGHT"
     gene            complement(1028..>1634)
                     /locus_tag="VHN39_02365"
     CDS             complement(1028..>1634)
                     /locus_tag="VHN39_02365"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2815208.1"
                     /translation="FANALVLGMTAILIAVESVQRLLAPEVVDYASALPLAVAGLAVT
                     LICVWLLKPTAEGRHDLNISAAHLHLTADALFGVLAIGGLLAGQRLGWRWADPMAGLA
                     GAALVAQFALSLIRRAGATLLDMNPSPELTAQVRARLEAEGERVVDLHLWRLGPGHHA
                     AVAVVSAANPLPPQAYHARLKGLEGLSHVTVEVQGLESDRV"
BASE COUNT          242 a          580 c          582 g          230 t
ORIGIN      
        1 ggtatggccg tccggcgcgg tcatcaggcc cacgtcgttg atccccaccg aggcgccgcg
       61 ccagtcgggg ccggttccgg tcttgtgggc gagactccag cccggcgcga ccgccgcctt
      121 catccgaagc gcgccggtgc gcgcctcgcc catcaggtcc agcatgaagt cggtggaggc
      181 ccggctgagc agctcgccgc gcttcagggc cgccagtgcg gtgacgatcc cgtccggggt
      241 cgccccgtcc ggcggattgg ccagatagtt ggccagcgcc tggtcgcgga cgtcgtccgg
      301 cagggcggcg cgggcctgtt tgaagatcca ggtctggcca tactcggggc gccactcgag
      361 gcccgccgtc ttggtctgga cctcgcgctc cgttccgccc accgccaggc ccgtgaggcc
      421 cttgtcggcg atcgcccggg tgacgacgcc ggggccgccc acctcgcgga tcagggtgtc
      481 gttggcggaa ttgtcgctct cgatcagggc gtggcgcaaa aggtcggcga cggtgatcga
      541 tagctcgcgc gagccgcgga tgcgggaggc cagcggctgg tagaagaccg agcggtcctc
      601 aggtcccatc accaccgtct gatccagcga caggcgcttg tcgtccaccg cctgcatgac
      661 cgccagcgcc acccacagct tggagacgct ctgctgcggg aaagtgatgt cgccgtcgac
      721 ctgagcggtc cagccctggg ccacctcgct gaccgaaatg ccgaccggct cgccgtaggc
      781 cgtggcgatc ttctggatca cggcctggaa ggcctcgggc gcaggtggcg gggtcacatg
      841 cttcaggggc gcggccgggc ccttggtgta ggcgatcttc tggacacccg aatgggtcgc
      901 gccccaccag ccgccgccga agccggcggc cagcatgaag accaccgcag tcgccatcag
      961 cctcggccgg gcagccaggg cgccccagaa tcgcgaaatc aaagccgtca tgcgccgctg
     1021 tagatcatca aactcggtcg ctttcgaggc cctgcacctc gacggtgacg tggctgaggc
     1081 cttccaggcc cttcagacgg gcgtgatagg cctgcggcgg cagggggttg gccgcgctga
     1141 ccacggcgac cgcggcatgg tggccaggcc cgaggcgcca cagatgcagg tccaccacgc
     1201 gctcgccctc cgcctccagc cgcgcgcgca cctgggcggt cagttctggc gaggggttca
     1261 tgtcgagcag ggtcgcgccg gcgcggcgga tcaggctgag cgcgaactgc gccaccagcg
     1321 ccgccccggc caggcccgcc atcggatcgg cccagcgcca gcccagccgc tgcccggcca
     1381 gcaggcctcc gatcgccagg acaccgaaca gggcgtcggc ggtcaggtgc aggtgggcgg
     1441 cggagatgtt gaggtcgtgg cggccctcag ccgtgggctt caggagccag acgcagatca
     1501 gggtgaccgc cagacccgcc acggccagcg gcagggccga ggcatagtcg acgacctcag
     1561 gcgccagcag ccgctggacg ctctccacgg cgatcaatat ggcggtcatg cccaggacga
     1621 gcgcgttcgc gaac
//
LOCUS       DATAJL010000127         1833 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40763,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000127 DATAJL010000000
VERSION     DATAJL010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1833)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40763"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VHN39_02370"
     CDS             <1..440
                     /locus_tag="VHN39_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEX2815209.1"
                     /translation="ADGVAPPAYVFFDGKGRKVTAAAFKGKIVVLNIWATWCAPCKLE
                     MPTLAKLAQAYAGKPVAVVAVSIDKADALDQAKAFIAGNAPLSFYNDPEAKLPWALKP
                     AANGMPTTIILGKDGLERGRISGEADWAGPGATAVIDKLLAAS"
     gene            complement(486..872)
                     /locus_tag="VHN39_02375"
     CDS             complement(486..872)
                     /locus_tag="VHN39_02375"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2815210.1"
                     /translation="MDVALGAAVRIRRRTIGISQEALAEQCGVSFQQIQKYENGANRI
                     SFSRLVQIARALKCRVVDLMDVLDGPDREITGDLDLLTRMRTPGAIELLAAYEQMAPE
                     ARTSLVGLLRAVVSQAEAPAKSRQVA"
     gene            1235..1486
                     /locus_tag="VHN39_02380"
     CDS             1235..1486
                     /locus_tag="VHN39_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815211.1"
                     /translation="MRPIRLHPPFDHGAALRVPPPSDKASWRTLWRWLGEAACAVAES
                     ASVQVRTPDGPVIARCGDWIVLSHSGSFHVAHASRACDA"
     gene            1550..>1833
                     /locus_tag="VHN39_02385"
     CDS             1550..>1833
                     /locus_tag="VHN39_02385"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HEX2815212.1"
                     /translation="MPPTFETLSAAARWYEAWLGEAALPLWAGAGVDPLGGLFQETLS
                     VAGAPIEAPRRARAQARQVFVFASAVAAGYGDRWRPVALAGWERFAAVYRR"
BASE COUNT          285 a          632 c          626 g          290 t
ORIGIN      
        1 ccgccgacgg ggtcgccccg cccgcttacg tgttcttcga cggcaagggc aggaaggtca
       61 ccgcggccgc cttcaagggc aagatcgtgg tgctcaacat ctgggcgacc tggtgcgcgc
      121 cctgcaagct ggagatgccg accctggcca agctcgccca ggcctatgcg ggcaagccgg
      181 tggccgtcgt ggcggtcagc atcgacaagg ccgacgcgct ggatcaggcc aaggccttca
      241 tcgccggcaa cgcgccgcta agcttctaca atgatccgga ggccaagctg ccctgggcgc
      301 tgaagcctgc ggccaacggc atgcccacca cgatcatcct gggcaaggac gggctggagc
      361 gcggccgcat ctcgggcgaa gccgactggg ccggtccggg cgcgaccgct gtgatcgaca
      421 agctgctcgc ggcgagctga ggctcgccgc gatcggccgg ggcccagacc gaaaaggcga
      481 tcgaatcagg cgacctggcg gctcttggcg ggcgcttcgg cttgcgagac gacggcgcgc
      541 agcagaccca ccagcgaggt gcgcgcttcc ggggccatct gttcgtaggc cgccaggagc
      601 tcgatcgcgc cgggtgtgcg catgcgggtc aggaggtcca ggtcgccggt gatttcgcgg
      661 tcgggaccat ccagcacgtc catcaggtcg acgacccggc acttcagcgc acgggcgatc
      721 tgcaccaggc gggagaacga gatgcggttg gcgccgttct cgtacttctg gatctgctgg
      781 aagctgaccc cgcattgctc ggccagcgct tcctgcgaaa tgccgatggt gcgccggcgg
      841 atgcgaaccg cggcccccag ggcgacgtcc atcggatcgg gcgccttcgt tgacgggtca
      901 accaattcct attctcccca aggccggctc ttctgcgcgg gcacaaatcc ccccggaccc
      961 cacgcaacgg ctctactata ggttaagcta gttgtttcca cgttcaaaag tctctgcgca
     1021 aggggcgggt gcgacaattt gcaacctccg ccttagtcgc ccggcctgca gtcatcaccg
     1081 gcgcccgcat gctccaccgg ggtcagcgca gttgcgagcc tgaacacgac cgtcaggatt
     1141 tgacgccaga gccctgaaat cgtgcggtta agcacttggt gaccgaagca ccggcaactc
     1201 ggtcccagaa cagttccacc gatcctaagg ttccatgcgc cccatccgcc tgcatccccc
     1261 cttcgaccac ggcgcggcgc tccgcgtgcc gccgcccagc gacaaggcga gctggcgcac
     1321 gctctggcgc tggctgggcg aggcggcctg cgcggtcgcg gagagcgctt ccgtgcaggt
     1381 gcgcaccccc gacgggccgg tgatcgcccg ctgcggggac tggatcgtgc tctcgcattc
     1441 cggatcgttc cacgtggccc atgcttcccg ggcttgtgac gcctaagaat ggggacgcct
     1501 aagcttggcg acgcctgacg tatgccgcaa gaatccgcca taaggcagga tgcctccgac
     1561 gttcgaaacc ctgtccgccg ccgcccgctg gtacgaagcc tggctcggtg aggccgccct
     1621 gccgctgtgg gctggcgcag gcgtcgaccc gctgggcggg ctcttccagg agaccctgag
     1681 cgtcgcgggc gcgccgatcg aggcgcccag gcgcgcccgg gcccaggcgc ggcaggtgtt
     1741 cgtcttcgcc tcggcggtcg cggcaggata tggcgaccgc tggcggccgg tggcgctggc
     1801 cggctgggag cgattcgcgg cggtctatcg gcg
//
LOCUS       DATAJL010000128         1977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40788,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000128 DATAJL010000000
VERSION     DATAJL010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40788"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..293
                     /locus_tag="VHN39_02390"
     CDS             <1..293
                     /locus_tag="VHN39_02390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioesterase"
                     /protein_id="HEX2815213.1"
                     /translation="ADGLGARAGGAALEYRLIHLDWPRAGARVELRSGASGGDARFRK
                     LTHWLLDPDSGRAWGVAEAIAVSFDLETRKMITLSDEALAEANSRVIPGLSL"
     gene            complement(307..1188)
                     /locus_tag="VHN39_02395"
     CDS             complement(307..1188)
                     /locus_tag="VHN39_02395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815214.1"
                     /translation="MDAMIDPEPRERMIPLPSRGGAMAALEMGPQDRPIDIIFSHANG
                     FNGRTYRTILQPLAADLRILALDLRGHGASTLPSVIEGRQGWLEFRDDLLALLAALDQ
                     GPVVLAGHSMGGTTSLLAAAIQPARVRALALFDPVAMPGDLPPDADALQHSPLVAGAL
                     RRRAVFPSRQAVYEAYLGRGAFKTWSDEQLTDYVAAGFAETDGGEVSLTCRPEWEASN
                     FRTHNYDPWAAFRESRCPIRILRAADASTFRLEGREAELGDDGRITVETVAGTTHFLP
                     MERPDLVRQTLLACVAL"
     gene            complement(1227..>1977)
                     /locus_tag="VHN39_02400"
     CDS             complement(1227..>1977)
                     /locus_tag="VHN39_02400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX2815215.1"
                     /translation="AGAQMTGAVAMSSDFTDANLSGAMMAGAKLTRAVLDGADLTGAD
                     LAGADLSGASMKRTVLNGANLQDTILDNVDMSDVLRAPPAVTFVDDRPLDQVLADHET
                     YCDSSGQRGAVLDLSNVDFRPMRSLKGRRFTALVARSAIFFGLDLQGAQFQGADLSGT
                     DFRGCDLRDADMRGAKLAGASFTRADMRGAKLGPLTIGDGRFVRTDFTRATLRGADLR
                     GAHAPRARFLEADMTGANLNGCDLTDAELEV"
BASE COUNT          281 a          665 c          753 g          278 t
ORIGIN      
        1 ccgccgacgg cctgggcgcc cgcgccggcg gggcggcgct ggaataccgg ctgatccacc
       61 tcgactggcc ccgcgccggg gcccgggtgg agctgcgctc cggcgcctcg ggcggcgatg
      121 cgcggttccg caagctgacc cactggctgc tcgatccgga cagcggcagg gcctgggggg
      181 tggccgaggc gatcgcggtg tccttcgacc tggagacccg caagatgatc acgctcagcg
      241 acgaagccct ggccgaggcc aattcgcggg tgatccccgg tctttcgctt tagggggctt
      301 gacgctttag agcgcgacgc aggcgagcaa ggtctggcgc accaggtccg gacgctccat
      361 cggcaggaag tgggtggtcc ccgcaaccgt ctccacggtg atacggccat cgtcgccgag
      421 ctcggcctcg cggccttcga gccgaaaggt cgaggcgtcg gccgcccgca ggatgcggat
      481 cgggcagcgg ctctcgcgga aggccgccca ggggtcgtag ttgtgggtgc ggaagttgga
      541 ggcttcccac tccggcctgc aggtcaggct gacctcgccg ccgtcggtct ccgcgaagcc
      601 cgcggccaca tagtcggtga gctgctcgtc gctccaggtc ttgaaggcgc cgcggccgag
      661 ataggcctcg tagaccgcct ggcggctcgg gaagacggcg cggcggcgca gcgcgcccgc
      721 caccaggggc gagtgctgca gggcgtcggc gtcggggggc aggtcgccag gcatcgccac
      781 cgggtcgaac agggccagcg cgcggacccg ggcgggctgg atcgccgcag ccagcaggct
      841 ggttgtgccg cccatcgagt ggccggccag gaccaccgga ccttgatcca gggccgccag
      901 cagggccagc aggtcgtcgc ggaactccag ccagccctgc cggccctcga tcacactcgg
      961 aagcgtgctt gcgccatggc cgcgcaggtc gagcgccaga atccgcaagt ccgccgccag
     1021 gggctgcagg atggtgcggt aggtgcggcc gttgaagccg ttggcgtggg agaagatgat
     1081 gtcgatgggc cggtcctgtg gccccatctc cagcgccgcc atcgccccgc cacggctggg
     1141 gagcggaatc atccgctctc gcggctcggg gtcgatcatg gcgtccatgg acccatatag
     1201 ccgccgcagg cgcgaggaga agagacctag acctcgagtt cggcgtcggt caggtcgcag
     1261 ccgttgaggt tggcgccggt catgtcggct tccaggaagc gggcgcgggg ggcgtgggcg
     1321 ccgcgcaggt ccgcgccgcg cagggtcgcc cgcgtgaagt cggtgcgcac gaagcggccg
     1381 tcgccgatgg tgaggggccc gagcttggcg ccgcgcatat cggcgcgggt gaaggaggcg
     1441 ccggccagct tggcgccgcg catgtcggcg tcgcgcaggt cgcagccacg gaagtccgtg
     1501 ccggaaaggt ccgcgccctg gaattgcgcg ccctgcaggt cgaggccgaa gaagatggcg
     1561 ctgcgggcga ccagcgcggt gaagcgccgc cccttcaggc tccgcatggg ccggaaatcg
     1621 acgttcgaaa gatcgagcac ggccccgcgc tggccgctgg aatcgcaata ggtttcgtga
     1681 tcggccagca cctggtccag cgggcgatcg tccacgaagg tgaccgcggg cggcgcgcgc
     1741 agcacgtcgc tcatgtcgac gttgtccagg atggtgtcct gcaagttggc gccgttcagc
     1801 acggtgcgct tcatcgaggc gccagagagg tccgccccgg ccaggtccgc gccggtgaga
     1861 tccgcgccgt ccagcaccgc ccgcgtgagc ttcgcgccgg ccatcatcgc gccggagagg
     1921 ttggcgtcgg tgaagtcgct cgacatggcg accgcgccgg tcatctgggc tccggcc
//
LOCUS       DATAJL010000129         3394 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40812,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000129 DATAJL010000000
VERSION     DATAJL010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3394)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3394)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3394
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40812"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..151)
                     /locus_tag="VHN39_02405"
     CDS             complement(<1..151)
                     /locus_tag="VHN39_02405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2815216.1"
                     /translation="MLIGLWIRDVVLIEALDLSIGPGLTVLTGETGAGKSIILDALGL
                     AVGARA"
     gene            complement(627..1442)
                     /locus_tag="VHN39_02410"
                     /pseudo
     CDS             complement(627..1442)
                     /locus_tag="VHN39_02410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522862.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
     gene            complement(1539..2150)
                     /locus_tag="VHN39_02415"
     CDS             complement(1539..2150)
                     /locus_tag="VHN39_02415"
                     /inference="COORDINATES: protein motif:HMM:TIGR04025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MSMEG_1061 family FMN-dependent PPOX-type
                     flavoprotein"
                     /protein_id="HEX2815217.1"
                     /translation="MADDPMSGALAELYKPPHPLTVAKALDRIDPHGRRFIELSPFLV
                     IGSAGEAGLDVSPRGGGPGFVRVAEDGLSLLMPDRPGNNRLDTLKNIAAGAGEVGLMF
                     MIPGVDDIYRVSGVASLETDEGLCATFEEFGKTPRTLLRVAVREAFLHCPKALMRADL
                     WGESHRVERSVLPSLSEMISDQLKLEKPTATHDEQVLGLRKSL"
     gene            complement(2211..3119)
                     /gene="lpxC"
                     /locus_tag="VHN39_02420"
     CDS             complement(2211..3119)
                     /gene="lpxC"
                     /locus_tag="VHN39_02420"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEX2815218.1"
                     /translation="MAADGFQSGAFQHTVKAPALFAGVGVHTGEFTQVAVRAAGTDAG
                     ITFVRTDITDRDNLVPATPESVCKTQLGTVITNEAGVTVATIEHLMAALVMSGIDNAI
                     VELDGPEMPIMDGSSWPFLKILDRAGRRPQAAARRFIEIIDTVEVVDGDKRASLSPAM
                     RFEVAFAIEFPTAVIGRQEIDLPMDEGAFRRELADCRTFGFLHEVEALRAMGLARGGT
                     MDNCVVIEGDRVLNPEGLRRPDEFVRHKALDAIGDLYVLGAPILGRFEGELAGHGINN
                     QLVRALAARPDAYRIVTFADEIAVAV"
BASE COUNT          560 a         1066 c         1195 g          573 t
ORIGIN      
        1 cggcgcgtgc gcccaccgcc aggccgagcg cgtccaggat gatcgacttg cccgccccgg
       61 tctcgccggt gagcacggtc aggcccggac cgatggacag gtccagtgcc tcgatcagca
      121 ccacgtcgcg gatccaaagc ccgatcagca tctcagcagg gaccactcgg aatcagcggc
      181 catccaggga gccgccgccg cgcagttgat cactttttgt tctcattgcc aaccggccgc
      241 ctagtggcgc gtccgactgg ccagtatcgc cgcgacgatc gccacgatca gggtgtgcca
      301 atagctgaac gggccgaggg ccaggccggc cgcgaaggcg cctatttggt gggtgtgggc
      361 gtcggatccg ggtctgggcc cgtggggtcc gacttgtcgc ggcccgtgaa gggaatgtgg
      421 aaggaaggca ggtggaagcc gcgcttcttc gtcggcggcg cggcgtcgtc gtcggcgtcg
      481 ggcttggcga gcggggtctt ggcgttggtc tgcgtcgaga gcgccgaggc cgtcgtgtcg
      541 agcgcggccg gcggtgctac ggtgttggtc ttgtccttgg tgaaggcggc gtggaagacg
      601 ctgcgcttgg agaccaccgc cgggatgacc gcgggccgca ggcccttgga ggtcagcagg
      661 ctataggcgt cggcgtacca ggggtcgccg gggtagttgt agcccagcac ggcgccgttc
      721 ttcttggcct cgtccagcag gcccagcgtc agataggctt ccacaaggcg gtagagcgcc
      781 tccggtgcgt ggctggtggt ctgatagcgc tcgacgacga acttgaaccg cccgatggcg
      841 gccagggtgt cgttctggcg cagataccag cggccgatgg tcatttcctt gcccgccaac
      901 tggtcgttga ccatgtcgat cttcaggcgg gcgtcggagg cgtattcggt gtgcggatag
      961 cgcgaggtga cctcgcgcag gttgtccagg gcctggccgg tggcggcctg gtcgcggccc
     1021 acatcgacga tctgttcgaa gtagcagatg gccttcagat agtgggcgta gggcgcggcg
     1081 gtgttgccgg gatagagcga gatgaagcgg tcgctatcgg cgatcgcctc gtcatagttg
     1141 ttggcctgat agtgggcgaa agcctgcatc aggatcgagc ggcgcgacca ttccgaatag
     1201 gggtgctggc gctccacctc ctggaagtag tcgacggcct ggccccacag gtgcttgtcc
     1261 atgcggtcgg cgccggtgga atagagcaac tcgaccgggc gctcttcata ggcgagcttg
     1321 agcttgggct tgggcctcag gctggaacag ccggcgacgg ccagggcgca gaaaacggcg
     1381 acgagccccg ctttcgacca tgaatggggg cggacccacg aattgcgaga aacaggcacc
     1441 atcacctcaa aagaacctac gcgcgccccc acgcgagaag cagcttctac accaccgact
     1501 gtggcgcgca aacggcgccg ggacgcttgg tcgcgccctt agagggactt tctcaggccc
     1561 agcacctgtt cgtcgtgtgt cgcggtcggc ttttccagct tgagctggtc gctgatcatc
     1621 tccgacaggg acggcaggac gctgcgctcg acgcggtgcg attcgcccca taggtcggcc
     1681 cgcatcagcg ccttcgggca atgcaggaag gcctcgcgga ccgcgacgcg cagcagggtc
     1741 cggggcgtct tgccgaactc ctcgaaggtc gcgcagagac cctcgtcggt ctccaggctg
     1801 gccacgccgc tcacacgata gatgtcatcg acgcccggga tcatgaacat caggccgacc
     1861 tcgccggcgc cggcggcgat gttcttcagg gtatccagcc ggttgttgcc gggtcgatcc
     1921 ggcattagca ggctaagccc gtcctcggcc acgcgcacga agcccgggcc gccgccgcgc
     1981 ggcgagacat caagaccagc ctcaccggcc gatccgatca ccaggaacgg cgagagttcg
     2041 atgaagcgcc ggccatgcgg atcgatccgg tcgagcgcct tggcgaccgt cagcgggtgc
     2101 ggcggcttgt agagctcggc gagcgcgccg gacattgggt catcggccat ggcggagtct
     2161 cctccaggcc atcgatacag ggctgagaac gcttcgcaag aaccgcggcg ctagaccgcg
     2221 acggcgattt cgtcggcgaa ggtcacgatg cggtaggcgt cgggccgggc ggctagcgcg
     2281 cggaccagct ggttgttgat gccgtgaccg gccagctcgc cctcgaaacg gccgaggatc
     2341 ggggcgccca ggacatagag gtcgccgatg gcgtccagcg ccttgtgccg gacgaactcg
     2401 tcggggcggc gcaagccctc ggggttcagc acccggtcgc cttcgatgac cacacagttg
     2461 tccatggtgc cgccgcgggc caggcccatg gcgcgcagcg cctcgacctc gtgcaggaag
     2521 ccgaaggtac ggcagtcggc gagctcgcgg cggaacgcgc cctcgtccat cggcaggtcg
     2581 atttcctggc gcccgatcac ggcggtgggg aattcgatgg cgaaggccac ctcgaagcgc
     2641 atggccggcg acaacgaggc gcgcttgtcg ccatccacga cctcgaccgt gtcgatgatc
     2701 tcgatgaacc tgcgggccgc ggcctgcggc cggcgcccgg cgcggtcgag gatcttcagg
     2761 aacggccagg acgagccgtc catgatcggc atttccggtc cgtcgagctc gacgatggcg
     2821 ttgtcgattc cggacatgac caaggcggcc atcaggtgct cgatggtggc cacggtgacg
     2881 ccggcctcgt tggtgatcac ggtgccgagc tgggtcttgc agaccgactc cggcgtcgcg
     2941 ggaaccaggt tgtcgcggtc ggtgatgtcg gtgcggacga aggtgatgcc ggcgtcggtc
     3001 ccggcggcgc gcacggcgac ctgggtaaat tcgccggtgt ggacgcccac gcccgcaaac
     3061 agcgccggcg ccttgacggt gtgttggaac gccccgctct ggaaaccgtc tgccgccacg
     3121 ctgggacctt cctactgggg cgcaaacccg agaatggaga agcgcccacc aatgcggtta
     3181 atgcgcttgg tgcgacgcag caaaacaaac cctgtttcgc aatgtttcgg ttaacggagt
     3241 ccaaaaatgc gcggcgccgc ggaggtccag aaagaccgcc gcggcgccgc gcatttttgg
     3301 actccgttaa ccgaaacatt gcgaaacagg gtttgttttg ctgcgtcgca ccaagcgcat
     3361 taaccgcatt ggtgggcgct tctccattct cggg
//
LOCUS       DATAJL010000130         1511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_53479,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000130 DATAJL010000000
VERSION     DATAJL010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53479"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1511
                     /locus_tag="VHN39_02425"
     CDS             <1..>1511
                     /locus_tag="VHN39_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815219.1"
                     /translation="ADAQAQVDRASDPVLAAQALGYRALHLRNQGKFAEAAAAGRQAL
                     QARAQVRAARGMTVKGPALVATSAGEVSIGSDLAHALNSRSGGQDLMGSSPISVSDQL
                     LVQDAQAWEVIGSSLQAEGDLAGARDALGQASRLLTASEANGALNVWLRSRVEADLAD
                     LDVANGQPGQAADRLATSIQILRARHAGTSTEGGLLLQLGHAQMLAGRDDAALASFGR
                     AFSLFQSQRGSLGASADDAAPYFDLLLAKIASDPAKADDYRGRFFSAAESVVSNSTAQ
                     TVSKLAARVASGDGAITGLVRALDDTKRELRATEARVANLQATNTYLGEAKTTLDLQL
                     KTLQQQSDTLEAQLLAANPRYAQLVASTAALPDLQKALRKDEVYLKLVLLGGRGYGIV
                     VSQTAAKPYRLELSREQAASAVRAIRSPFEAEAGLPAFDIARSYALFQQLLGPVRTEL
                     ASAKHLIYEPDGALISLPVAMLVTEDPAPLLAGLAAGKEPDYRKVAWLGARLD"
BASE COUNT          216 a          590 c          501 g          204 t
ORIGIN      
        1 tcgcagacgc gcaagctcag gtcgaccggg cgagcgatcc ggtgctcgcc gcccaggccc
       61 tgggctaccg cgcgctccac ctgcgcaatc aaggcaagtt cgccgaagcc gccgcggccg
      121 gccgccaggc ccttcaggcc cgcgcccagg tccgcgccgc ccgcgggatg acggtcaagg
      181 ggccggccct ggtcgcgacc tcggcgggcg aggtgtccat cggctcggac ctggcgcacg
      241 ccctcaacag ccgctccggc ggccaggacc tgatgggatc cagccccatc tcggtctccg
      301 accagctcct ggtgcaggac gcccaggcct gggaagtgat cggatcctcc ctgcaggctg
      361 agggcgacct ggccggcgcg cgcgatgcgc tgggccaggc cagccgcctg ctcacagcca
      421 gcgaggccaa tggcgcgctg aacgtctggc tgcgtagccg tgtcgaagcc gacctcgccg
      481 acctcgacgt ggccaatggc cagccgggcc aggccgccga ccgcctggcg acctcgatcc
      541 agatcctgcg cgcccggcac gccggcacct ccacggaggg cggcctcctg ctgcagctcg
      601 gccacgccca gatgctcgcc ggccgcgacg acgccgcgct cgcgagcttc ggccgcgcct
      661 tctcgctgtt ccagagccag cgcggctccc tgggcgcctc ggccgacgac gcggctccct
      721 atttcgacct gctgctggcc aagatcgcca gcgacccggc caaggccgac gactaccgcg
      781 gccggttctt ctccgccgcc gagagcgtcg tctccaactc cacggcccag accgtctcca
      841 agctcgccgc ccgggtggcg tcaggcgacg gcgcgatcac tggactggtc cgggcgctcg
      901 acgacaccaa gcgcgagctg cgcgccactg aggcccgcgt cgccaacctg caggcgacca
      961 atacctatct tggcgaggcc aagaccaccc tcgatctgca gctgaagacc ctgcagcagc
     1021 agtccgacac gctcgaggcc cagctgctgg cggccaatcc gcgctacgcc cagctggtcg
     1081 cgtccaccgc cgccctgccc gacctgcaga aggcgctgcg caaggacgag gtctacctca
     1141 agctcgtgct gctcggcggc cgtggctacg gcatcgtggt ctcccagacc gccgccaagc
     1201 cctaccggct ggagctgtcg cgcgaacagg cggcttcggc agtccgggcg atccgctcgc
     1261 cgttcgaggc ggaagctggc ctgccggcct tcgacatcgc caggtcctac gccctgttcc
     1321 agcaactatt gggcccggtg cggaccgaac tcgcctccgc caagcacctg atctatgagc
     1381 cggatggcgc gctgatctcg ctgccggtcg cgatgctggt gaccgaggat cccgcgccgc
     1441 tgctggcggg cctggcggcg ggcaaggagc ccgactaccg caaggtcgcc tggctgggcg
     1501 cgcggctgga t
//
LOCUS       DATAJL010000131         3758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40921,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000131 DATAJL010000000
VERSION     DATAJL010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40921"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..390
                     /locus_tag="VHN39_02430"
     CDS             <1..390
                     /locus_tag="VHN39_02430"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2815220.1"
                     /translation="GYTRIGGSPDAGLTVTLPQAMGYEKAMRFMMENRTLVGEEAVAW
                     GMAGEVVDDEAMPARLAAYCQELCAWSPITLRLLKRGMVRSYETTDLESQLRYEVSNI
                     RRAFGSEDGQEARRAFLEKRKPVFLGR"
     gene            485..1252
                     /locus_tag="VHN39_02435"
     CDS             485..1252
                     /locus_tag="VHN39_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815221.1"
                     /translation="MRGILVSAVGLSALALSAGMSTTAYAGASLNYGGVDAAPADGTP
                     LKTPAALDCPASQGALTRTAQAADGRSCDYQGAAGETVRLRLVALEGRSATEAMAPTK
                     AELHALVPIYNRPVPAVDKDEPGDRADIDLPFFHVHTRGDHAEVRMFGVKIHSEGDNA
                     DVNVGHGHKHTVVHAGAGGAEVVAEDVGRSNASLVYVLASDRRMSSGYCTVGYVAKGP
                     AKGPLVVGEFRDTQKRHTHDDGDHGDIGRLIDRNFKG"
     gene            complement(1412..3061)
                     /locus_tag="VHN39_02440"
     CDS             complement(1412..3061)
                     /locus_tag="VHN39_02440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HEX2815222.1"
                     /translation="MAPWTAAILTLAAGVMLLASGATPSEPARFMRLIQITPVYLIEA
                     SHFLSSILGLALVLLSFGLRARLDAAWGATLGALLLAATLALLKGFNWEETAALVALA
                     LLIAPFHGAFPRSSRLTRMEITPGWLFSAACAVIGAGLLGFWSFQHSDYADRPWWRVM
                     ADADAERAMRAWAGAALVLFGVGVWRLFASAATPPVVGESDPDYERVRTILAKAEAAE
                     PGSNLALLGDKRFLFSASGESFLMFGVRGRAWVALGAPVGKREERQELLWRFRELADS
                     HAARPGIHGLNAEDLPEIVELGFSIQKVGETAAVPLENFSMDGRKRGNARRAWRRLGE
                     AGATFEVLGREAVTAVLPALQAISDEWLSHHAGGEKGFSMGGFWPGYVQEFPVALVRV
                     EGKPVAFATLWTTASHSAFSMDLMRYADEAPNNIMDYLFVELINWGRDQGYEAFEFGI
                     APLAGLDDRPLAPIMSRVGRLLFERGEEIYNFQGVRRFKDKYDPLWQPRYCAAPHKWS
                     IPWLMADVGLLSSGGVAGLSKRPKKVEELKDEPKAEVPAAA"
     gene            3242..>3758
                     /locus_tag="VHN39_02445"
     CDS             3242..>3758
                     /locus_tag="VHN39_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2815223.1"
                     /translation="MADFGAAELDTFRAEVRAWLEAEYPAELRKPDARTDPEAVWGGR
                     DFEGSDDPQSVWMRRVAEKGWTTPTWPTAYGGAGLTAQQARVIDQEIAHGRYRPPLLS
                     FGIWMLGPVLLEYGDEAQKAEHMPKIVRGEIRWCQGYSEPGAGSDLASLATKCEDKGD
                     HWQIDGQKVWTS"
BASE COUNT          655 a         1281 c         1287 g          535 t
ORIGIN      
        1 ggctacaccc gcatcggcgg atcgcccgac gccggcctga cggtaaccct gccgcaagcc
       61 atgggctacg agaaagccat gcgcttcatg atggagaacc gcacgctggt cggcgaggag
      121 gctgtggcat ggggcatggc cggcgaggtc gtggacgatg aggccatgcc cgcgcgcctg
      181 gccgcctatt gccaggagct gtgcgcctgg tctccgatca ccctgcgcct cctgaagcgc
      241 ggcatggtga ggtcctacga gacgaccgac ctggaatcgc agctccgtta cgaggtctcc
      301 aacattcgcc gcgccttcgg cagcgaggat ggtcaggagg cgcgccgcgc cttcctggag
      361 aagcgcaagc cggtgttcct ggggcgctga gcagggcgat ccttaccgcg atttcactgg
      421 acccttgccc cgccagcccc gacggtccgc cggctcataa cagggctgtt caagggatta
      481 agtgatgcgc ggaattcttg taagcgccgt aggcctgtcg gcgctggcgc tctcggctgg
      541 tatgtcgacg accgcatatg ccggcgcatc gctcaactac ggcggcgtcg acgccgcccc
      601 cgcagacggg acgcccctga agacccccgc cgcgctcgac tgccccgcga gccagggcgc
      661 gctgacccgc accgcacagg cggcggacgg caggagctgc gactatcagg gcgcggctgg
      721 cgagacagtg cgccttaggc tggtggcgct cgaaggccgc tcggcgacgg aagccatggc
      781 gccgaccaag gccgagttgc acgccctggt gccgatctac aaccggccgg tcccggccgt
      841 ggacaaggat gagcctggcg atcgcgccga catcgacctg cccttcttcc atgtccacac
      901 ccggggcgac cacgccgagg tgaggatgtt cggcgtcaag atccactccg agggcgacaa
      961 cgccgacgtc aatgtcggcc acggtcacaa gcacacggtg gtccacgccg gcgccggtgg
     1021 cgcggaagtc gtggccgagg atgtcgggcg gtccaacgcc tccctggtct atgtgctggc
     1081 gtccgacagg cgcatgagct ccggctactg cacggtcggc tacgtggcga agggtccggc
     1141 caaggggccg ctggtggtcg gcgaattccg cgacacccaa aagcgccaca ctcacgacga
     1201 cggcgatcac ggcgacatcg gccggctgat cgaccgcaac ttcaagggct agcgtgctgg
     1261 ctttgaagtt cgcctcactc agggccatgc gccgagcgaa cttcaaatcc aaagaagcac
     1321 gctaggaaaa catagactcc ctagtgtcct catcgattcc gaagttcgcc cagcgctcgc
     1381 cgcaggcgct tcgaacttcg gaatcgggac actaggccgc cgccggaacc tccgccttcg
     1441 gctcgtcctt cagctcctcg acctttttcg gccgcttgga gagcccggcg acgccgccgg
     1501 aggacagcag gcccacgtcg gccatcagcc aggggatcga ccacttgtgt ggggcggcgc
     1561 agtagcgcgg ctgccagagc gggtcgtact tgtccttgaa ccggcgaacg ccctggaagt
     1621 tgtagatctc ctcgccgcgt tcgaagagca ggcggccgac ccgcgacatg atcggggcga
     1681 gcggccggtc gtcgaggccg gctaggggcg cgatgccgaa ctcgaaggct tcgtagccct
     1741 ggtcgcggcc ccagttgatc agctctacga agaggtaatc catgatgttg ttgggcgcct
     1801 cgtcggcgta gcgcatcagg tccatggaaa aggccgagtg gctggcggtg gtccacaggg
     1861 tggcgaaggc cacgggctta ccctctaccc gcaccagagc caccggaaac tcctgcacat
     1921 agcccggcca gaagccgccc atggagaagc ccttctcgcc gccggcgtgg tgcgagagcc
     1981 actcatcgga gatcgcctgc agagcgggca gcacggcggt gaccgcctcg cggcccagca
     2041 cctcaaaggt cgcgccggcc tcgccaagcc tgcgccaagc ccggcgcgcg ttgccgcgtt
     2101 tgcggccgtc catggagaag ttttccagcg gcaccgcggc ggtctcgccc accttctgga
     2161 tggagaagcc gagctcgacg atctccggca ggtcctcggc gttgaggccg tggattccgg
     2221 ggcgcgcagc atgggaatcg gccagttcac ggaaccgcca gagcagctcc tgccgttcct
     2281 cgcgcttgcc gaccggcgct cccagcgcca cccaggcgcg gccgcggacc ccgaacatca
     2341 ggaagctctc gcccgacgcc gagaacagga accgcttgtc gccaagcagc gccagattgg
     2401 accccggctc ggcggcctcg gccttggcca ggatggtgcg gacgcgctcg tagtccggat
     2461 cgctttcgcc caccacaggc ggcgtcgcgg ccgaggcgaa gagccgccag acgccgaccc
     2521 cgaacagcac cagcgccgcg cccgcccagg cccgcatggc gcgttcggcg tcggcgtcgg
     2581 ccatcacccg ccaccagggt cggtcggcgt agtccgagtg ctggaacgac cagaacccca
     2641 gcaaacctgc gccaatgacc gcgcaggccg ccgagaacag ccaacccggc gtgatctcca
     2701 tacgggtcag gcgtgagctg cgagggaagg cgccgtggaa cggggcgatc agcagggcca
     2761 gcgccacgag ggccgcggtc tcttcccagt tgaatccctt gagcagggcc agggtggcgg
     2821 ccagcagcag agcgccgagt gtcgcgcccc aggcggcgtc caggcgcgcg cgcaggccga
     2881 aggacaggag caccagggcc aggcccagga tcgaggacag gaagtggctg gcttcgatca
     2941 gataaaccgg ggtgatctgg atcaaccgca tgaagcgcgc gggctcggac ggcgtagcgc
     3001 ccgaggccag cagcatcacg ccggcggcca gggtcaggat cgccgccgtc cagggcgcca
     3061 tcgcaagggc cgccggccga aggtctctca ggaagcgcat ccagccccgt aagtccgttg
     3121 aaagtgacgc cctaatagcc gatttgccga ggttgagcgc gtcaaacgac tgtttcgttg
     3181 cgcaaggccc agcgctaagg tggccgccgt ttcaggtctc tcaagagggt tagagcccgc
     3241 catggctgat ttcggcgccg cagagctcga caccttccgc gcggaggtcc gcgcttggct
     3301 ggaggctgag tatccggccg agctgcgcaa gcccgacgcc aggaccgacc cggaagccgt
     3361 ctggggcggg cgcgacttcg aaggctccga cgacccgcag tcggtctgga tgcgccgcgt
     3421 cgcggagaag ggctggacca cgcccacctg gcccacggcc tacggcggcg ccgggctgac
     3481 ggcgcagcag gcccgggtga ttgaccagga gatcgcccac ggccgctacc gcccgcccct
     3541 gctttccttc ggcatctgga tgctggggcc ggtgctgctg gaatacggcg acgaggccca
     3601 gaaggccgag catatgccca agatcgtgcg cggcgagatc cgttggtgcc aggggtactc
     3661 ggagcctggc gccgggtccg acctcgcgag cctcgccacg aagtgcgagg acaagggcga
     3721 ccattggcag atcgacggcc aaaaggtgtg gaccagct
//
LOCUS       DATAJL010000132         1572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78528,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000132 DATAJL010000000
VERSION     DATAJL010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78528"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..798
                     /locus_tag="VHN39_02450"
     CDS             <1..798
                     /locus_tag="VHN39_02450"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX2815224.1"
                     /translation="ILTGGRMPTSASEIVLGPTTAKAMHVGIGGTVRLTGGPVLRTFT
                     VTGTGFVPQGPHNTYDDGAWLTPAGFARLFHGAQPAFKFHVATVSLRPGADVAAAAKR
                     LTAIAAKFKGAQNIGFEISTPPGESQAIKEVAVLPLALAAFLALLAVAAIGYALSLAV
                     RRRRHELAVLRALGLTRGQTRLVVVTQATVLAVIGLAFGIPLGVAAGRTLWRAAAGIT
                     PLAYHTPETLWALVLIAPVALVVANLLAGWPGHRAARLRTAEILRTE"
     gene            849..1526
                     /locus_tag="VHN39_02455"
     CDS             849..1526
                     /locus_tag="VHN39_02455"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2815225.1"
                     /translation="MGSVIRVALAEDNVLLREGVSRLVAADKDLELVGVAGDLPELFG
                     VIERCAPDVVITDIRMPPTGRDEGIQAAAWLREHRPEVGVVVLSQYTTPSYAVALLEH
                     GSAGRAYLLKERVASVDELVRAVHTVAGGGSVIDPLVVDELVRSRSHPGASSLDTLTP
                     RETQILAEMAQGKNNAAIATAVSVSERAVEKHTNSIFAKLGLSEEQDVNRRVKAVLLF
                     LGQGRGG"
BASE COUNT          210 a          556 c          587 g          219 t
ORIGIN      
        1 atcctgaccg gcggccggat gccgacctcg gccagcgaaa tcgtgctcgg cccgaccacg
       61 gccaaggcga tgcacgtggg catcggcggc accgtccggc tgaccggcgg cccggtgctg
      121 cggaccttca cggtgaccgg caccggcttc gtgccgcagg ggccgcacaa cacctacgac
      181 gacggcgcct ggctgacccc ggccggattt gcccggctct tccacggcgc gcagcccgcg
      241 ttcaagttcc acgtggccac cgtgtcgctg cggccgggcg cggatgtcgc cgcggccgcc
      301 aagcggctga cggccatcgc cgccaagttc aagggcgccc agaacatcgg gttcgagata
      361 tccacgccgc ccggggagag ccaggcgatc aaggaagtgg ccgtgctccc gctggcgctg
      421 gcggccttcc tggccctgct agccgtggcg gccatcgggt acgcgctgtc gctcgcggtg
      481 cgccggcgcc ggcacgagct ggccgtgctg cgcgcgctgg ggctgacccg agggcagacc
      541 cgcctggtcg tggtgaccca ggccaccgtg ctcgccgtca tcgggctggc cttcggcatc
      601 ccgctgggcg tcgcggcggg ccggaccctg tggcgcgccg cggctggcat aaccccgctg
      661 gcctaccaca cgccggagac gctgtgggcg ctggtgctga tcgcgccggt ggccctggtg
      721 gtggccaacc tgctggccgg ctggcccggc caccgcgcgg cccggctgcg gaccgcggag
      781 atcctgcgca ccgagtagcc gggcgcggcc cggggtcggg tcgcgctcac gctacgatcg
      841 tggctcaaat gggaagtgtc atccgggtcg cgctggccga agacaacgtc ctcctgcggg
      901 agggcgtgtc ccgcctggtc gcggccgata aggacctcga gcttgtcggg gtggccggag
      961 acctgcctga gctgttcggc gtgatcgagc gctgcgcgcc ggacgtggtc atcaccgaca
     1021 tccggatgcc gcccaccggc cgcgacgagg gcatccaggc cgccgcctgg ctgcgcgagc
     1081 accggccgga ggtcggcgtg gtggtactga gccagtacac gacgcccagc tacgccgtgg
     1141 ccctgctcga gcacggttcg gccggccgcg cctacctgct gaaggagcgg gtggccagcg
     1201 tggacgagct ggtccgcgcg gtgcatacgg tggccggcgg cggctcggtg atcgatccgc
     1261 tagtagtgga cgagctggtc aggtcgcgct cgcacccggg ggcctccagc ttggacacgc
     1321 tgaccccgcg ggagacgcag atcctggccg agatggccca gggcaagaac aacgccgcca
     1381 tcgccaccgc ggtgtcggtg tccgaacggg cggtggagaa gcacaccaac tcgatcttcg
     1441 ccaagctggg cctgagcgag gagcaggacg tgaaccgccg ggtcaaggcg gtgctgctgt
     1501 tcctagggca gggccgggga ggctgacctc cccatgctga gggtggcacc accctgccgc
     1561 tggatccggt cc
//
LOCUS       DATAJL010000133         2359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27921,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000133 DATAJL010000000
VERSION     DATAJL010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27921"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..679
                     /locus_tag="VHN39_02460"
     CDS             107..679
                     /locus_tag="VHN39_02460"
                     /inference="COORDINATES: protein motif:HMM:NF014906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HEX2815226.1"
                     /translation="MALERRTIVGAALDLLDEVGMEGLSTRRLAAELGVKGPSLYWHF
                     KSMRELFNHMAEVLRETALPAPDAFPHDWQAWLADGARGLRRAALSHRDGARLMAGAT
                     PTGTSQILDFPAMTGRLQSEGFRYREANAALMSLGRYALGWASYEQLTPTRPANSDET
                     FEFGLQAMIAGIALKVPAAALPRGQQLRPA"
     gene            899..2314
                     /locus_tag="VHN39_02465"
     CDS             899..2314
                     /locus_tag="VHN39_02465"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2815227.1"
                     /translation="MPPAPSAAVGLTRQGLARFSVGDFRTAEQAFRTVIEVAPHEAMS
                     WNNLALVLVAVGELDQAVPVLRRSLGIDSTQLSPWVNLAGALVRLDRAEEAEAACAAA
                     LALDPASADVWQILAMTRLQAEDFPGAAEAFSRTIELSGESATLRLNLAAALLKSGRF
                     AEAAYSAGRALALDLSCAAAFEIRQLCDFLSAAIAGDMTAARAIYSRALFASPPDADR
                     IFRTALLYLDMADQRRAAIAVAEDWAATCPASVEAVHMRDAALSRVVARQPAELVSQA
                     FDEIADDFDDRLVRRLAYQGPEQLAALIASRITADGVLDVLDLGCGTGLCAPFLRPYA
                     RQLSGIDLSAGMLAKAAQRGLYDHLEVADLLGVLGEAPARWDLLVAGDTFPYLGDLTG
                     VFESAAAALKPGGWLAFSTEACDSAGYVLKGNGRFAHGAAYIVGLAAGRFEIVAQTSA
                     TLRREAASPVEGDFYLLRLLR"
BASE COUNT          331 a          897 c          758 g          373 t
ORIGIN      
        1 tcttcccgtt catcgataac cctccgtccc gacgctcatc gcggcgtcta ggctggcgca
       61 gcctagcaat gctagacacg gctggcgaga gtggagagac cggcgcatgg cgctcgagcg
      121 cagaaccatc gtcggggccg ccctcgatct cttggacgag gtcgggatgg aagggttgtc
      181 gacgcggcga ctggccgccg aactcggggt aaagggccct tcgctctact ggcacttcaa
      241 gagcatgcgc gagctcttca accacatggc cgaggtcctg cgcgagaccg cgcttcccgc
      301 cccggacgcc ttcccccacg actggcaggc ctggctggcg gacggcgctc gggggcttag
      361 gcgcgccgcg ctctcccacc gcgatggcgc gcgcctgatg gcgggcgcca cacccacggg
      421 gaccagtcag atcctcgatt tcccggccat gaccggccgc ctgcagtcgg aaggttttcg
      481 ctaccgcgag gcgaacgccg cgctgatgtc cttgggccgt tacgccctgg gctgggcgtc
      541 ctatgagcaa ctgaccccga cccggccggc caattccgac gagaccttcg aattcggcct
      601 gcaggcgatg atcgcgggca tcgcgctcaa ggtccctgcg gcggcgctgc cgcgcggcca
      661 gcagctccgc ccagcctgat cgaccgcccg ctaccgattg ccgcctactg atcgtccccc
      721 actgatcgac ccccactgat cgtccgggac gttacccgac ccttaaccat aaccctgcag
      781 gctggcgcgg aacccaaacc gcactggacc gaccatccct accccgcaaa ccaatctcgc
      841 catcgcgcac gaggaagccg acctcagcga cgcgctgcac ccctcgatct cgcgcatcat
      901 gccgccggcc ccgtcggcgg ccgtcggcct gacgcgccag ggactggcgc gcttctccgt
      961 cggcgatttc cgcaccgccg agcaggcctt ccggacggtc atcgaggtcg cgccgcacga
     1021 ggccatgtcc tggaacaacc tggcgctggt gctggtggcg gtgggcgagc tggaccaggc
     1081 cgtgccggtg ctgcgccgct cgctcggcat cgattccacc cagctctcgc cgtgggtaaa
     1141 cctggccggc gccctggtca ggctcgaccg cgccgaagag gcggaagccg cctgcgccgc
     1201 ggccctggcg ctcgacccgg ccagcgccga cgtctggcag atcctggcca tgacccgcct
     1261 gcaggccgaa gacttccccg gcgccgccga ggccttcagc cgcaccatcg agttgagcgg
     1321 cgagagcgcg accctgcgtt tgaacctcgc cgcggccctg ttgaagtccg gacgtttcgc
     1381 cgaggcggcc tacagcgccg gacgcgcgct ggccctcgac ctcagctgcg ccgcggcgtt
     1441 cgagattcgc cagctctgcg atttcctctc cgctgctatc gccggcgaca tgacggcggc
     1501 cagggcgatc tactcgcggg cgctcttcgc ctcgccgccg gacgcggacc gcatcttccg
     1561 gaccgcattg ctctatctcg acatggccga tcagcgccgc gccgccatcg cggtcgccga
     1621 ggactgggcg gcgacctgtc cggcgagcgt cgaggcggtc cacatgcgcg acgccgccct
     1681 ctcccgcgtc gtggcccgcc agcccgccga gctggtctcg caggccttcg acgagatcgc
     1741 cgacgatttc gacgaccgtc tggtgcggcg gctggcctat cagggccccg agcagctggc
     1801 ggccctgatc gcatcgcgga tcaccgccga cggtgtgctg gacgtgctgg acctgggctg
     1861 cggcacaggc ctctgcgccc cgttcctgcg cccctatgcg cggcagttgt cgggcatcga
     1921 tctgtcggcc ggcatgctcg ccaaggccgc acagcgcggc ctctacgacc acctcgaggt
     1981 cgccgatctg ctgggcgtgc tcggcgaagc gcccgcccgc tgggacctgc tggtcgccgg
     2041 cgacaccttt ccctacctgg gcgacctgac gggcgtcttc gagagcgccg ccgcggcgct
     2101 caagcccggc ggctggctcg ccttctccac cgaagcctgc gacagcgcgg gctacgtcct
     2161 gaagggcaac ggccggttcg cgcacggcgc agcctacatc gtcggcctcg ccgccggccg
     2221 cttcgagatc gtcgcccaga cctcagccac cctgcgccgc gaggccgcca gcccggtcga
     2281 gggcgacttc tacctcctgc ggctgttgcg ttgacttgat cgactacgcc tgtaatttgc
     2341 acggactaca tgtgtaaat
//
LOCUS       DATAJL010000134         4395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_40962,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000134 DATAJL010000000
VERSION     DATAJL010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4395
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_40962"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..459)
                     /locus_tag="VHN39_02470"
     CDS             complement(4..459)
                     /locus_tag="VHN39_02470"
                     /inference="COORDINATES: protein motif:HMM:NF014591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family protein"
                     /protein_id="HEX2815228.1"
                     /translation="MTALILASKSTARRAVLEGAGVPFEAVGSGVDEDAAKVGLAAKR
                     ATPRQVAEALAEDKALAVSVSRPELVVGADQTLEFQGQLYDKVESVDDARARLKTLRG
                     KPHQLHSAVVVAQAGAVVWRETQSATLRMRDFSDGFLEDYLAAEGEAAR"
     gene            complement(456..1325)
                     /locus_tag="VHN39_02475"
     CDS             complement(456..1325)
                     /locus_tag="VHN39_02475"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, water dikinase regulatory protein"
                     /protein_id="HEX2815229.1"
                     /translation="MRYDQPVTTPAPRLATYFHVHLVSDSTGETLNAMARAVCARFDN
                     VLPIEHIYALVRSQRQLDRALGDIEEAPGVVIHTIVDDGLRQALEEGCRRLDMLCIPA
                     LDPLVSAMSRYLGYSTTTRVGAHLRLDNDYFNRMDALNYAIGHDDGQGGQDLEQADVI
                     LVGVSRTSKTPTCIYLAHRGVRAGNVPLVPGRPPPEKLFNLKNTLVVGLSISPDRLIQ
                     IRRNRLLSLKENRQSTYIDVDAVRDEIVQARRLYERQGWPVIDVTRRSVEETAAAVLN
                     LLHGGHGQVEVIG"
     gene            1831..2895
                     /gene="hemE"
                     /locus_tag="VHN39_02480"
     CDS             1831..2895
                     /gene="hemE"
                     /locus_tag="VHN39_02480"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEX2815230.1"
                     /translation="MSQTPRLLRALSGEILDRPPIWFMRQAGRSLPEYLELRTRAADF
                     ITFCHNPEMAAEATLQPMRRFPMDAAIVFADILLIPGALGQKVWFEAGEGPRLGELPD
                     IARMADEVEASTGRLSAIGETLERVRAELEPDRALIGFAGGPWTVATYMIEGRSSNRE
                     VARTFAYEHADKLDALLKVLVDSTARYLIMQAKSGAQALQIFESWAEGLAEDVFERIV
                     IGPHKAIVEQVRAAGVTVPFIGFPRGAGALVENYARSVPVEGVALDTQASADLGRRLQ
                     AGGKTIQGALDNLLLRAGGPALDARVESLLAQWSDGPYIFNLGHGVMPDTPIAHIARV
                     VERVTGKPVKAMAPQDARRA"
     gene            2892..3929
                     /gene="hemH"
                     /locus_tag="VHN39_02485"
     CDS             2892..3929
                     /gene="hemH"
                     /locus_tag="VHN39_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEX2815231.1"
                     /translation="MTRLAIVLFNLGGPDSLKAVKPFLFNLFRDPAIITSPAVVRYPL
                     AALISTTREKTAQANYAIMGGASPLLAETGAQARALEAALKAKDPDLEARCFIAMRYW
                     KPFAKETAAQVAAFAPDEVVLLPLYPQYSTTTTGSSLKDWLGVYRGPGRTRTVCCYPT
                     AQGLIAAHAQAIRDVWDAAGKPKTVRLLFSAHGLPQKIVDGGDPYRAQVEATAAAIAA
                     QLPELADWRVCFQSRVGRLAWLAPYTEDEIRAAGADGKGVLIAPIAFVSEHVETLVEL
                     DRDYARLAVEVGCAPYLRAPTPGIRGAFIEELARTVLEAAGRDGGTAPHGPWRCPAGH
                     AKCALKTGKAA"
     gene            3930..4388
                     /locus_tag="VHN39_02490"
     CDS             3930..4388
                     /locus_tag="VHN39_02490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEX2815232.1"
                     /translation="MNWYDLLRGLHIISVIAWMSGMMYLPRLFAYHTETAPPGSEFDA
                     HFKVWELKLLRIIINPAMTLTFIFGLGLIWVDGSQRLGWGFLLQTWMVVKIAGIVFLT
                     AWHGFLSGARRKIAAGERPRTAKFWRATNELPFLAAVVMVLAVTLEFKFW"
BASE COUNT          679 a         1503 c         1505 g          708 t
ORIGIN      
        1 ggactacctg gccgcctcgc cctcggcggc caggtagtcc tccaggaagc cgtcggagaa
       61 atcgcgcatt cgaagcgtcg cgctctgggt ctcgcgccag accaccgctc cggcttgcgc
      121 caccaccacc gccgagtgca gctggtgcgg cttgccccgc agggtcttca ggcgcgcgcg
      181 ggcgtcgtcg acgctctcaa ccttgtcgta gagctggccc tggaactcca gcgtctgatc
      241 ggcgcccacc accagctccg gccggctgac cgagaccgcc agcgccttgt cctcggccag
      301 cgcttcggcc acctggcgcg gcgtcgcgcg ctttgccgcg agccccacct tggcggcgtc
      361 ctcgtccacg ccggacccca ccgcctcgaa gggtacgccg gcgccttcga gcaccgccct
      421 gcgcgccgtg ctcttggagg ccaggatcaa cgccgtcacc cgatcacctc gacctggccg
      481 tgcccgccat gcaacaggtt gagcaccgcc gcggcggttt cctccaccga gcggcgggtt
      541 acgtcgatca ccggccatcc ctggcgctca tagagccggc gggcctgcac gatctcgtcg
      601 cgcacggcgt cgacgtcgat gtaggtggat tgccggttct ccttgaggct caggagtcgg
      661 ttgcggcgga tctggatcag ccggtccggc gagatggaaa gcccgacgac cagggtgttt
      721 ttcaggttga acagcttttc aggcggcggc cggcccggca ccaggggcac attgccggcg
      781 cgcacacccc ggtgggccag gtagatacag gtcggcgtct tagaggtccg cgacacgccc
      841 accaggatca cgtcggcctg ttcgagatcc tgcccgccct ggccgtcgtc gtggccgatg
      901 gcgtagttca aggcgtccat gcggttgaag tagtcgttgt cgagccgcag gtgggcgccg
      961 acccgggtcg tggtcgaata gccaagatag cgggacatgg ccgagaccag cgggtcgagc
     1021 gccgggatgc agagcatgtc gagccgccgg cagccctcct ccagcgcctg gcgcaggcca
     1081 tcgtcgacga tggtgtggat caccacgccg ggcgcttcct cgatgtcgcc cagcgcccgg
     1141 tcgagctggc gctgcgagcg gacgagcgca tagatgtgtt cgatcggcag aacgttgtcg
     1201 aaccgggcgc agacggcgcg cgccatggcg ttcagcgtct cgccggtgga gtccgacacc
     1261 aggtggacgt ggaagtaggt ggcgagcctt ggcgcgggcg tggtcacggg ctggtcgtac
     1321 ctgatgagcg ggaaaaaagc ctggggacga ttcctgtgga gcagtcttag cgaagctgcg
     1381 cgcgaatggg gatagatcgc gtgcgcccgg gcggccgggg ccgtccccat gtatgggcgg
     1441 gatgaaatag gccgttaacg gatcgttagc ccacaccccg cttgcccggt gcagggctgc
     1501 gagcccggtt gtcgacagcg gtggggccat gtgatcggcg ccccgggcct tccccgaaag
     1561 tcttaacgaa accttaaggg tctcaggggg tttggggtgt cgtccccgca atccacaccc
     1621 agggaagacg ccgcccggcg ccggctggct cactggggag aagccgggcg ccagcgaggc
     1681 gccgtgggtc ttgtccaccg tctcgacagg ccctaccgcc gctaccccag acctttttca
     1741 agactcttct agggaaggaa gaagggcaga ccgtgacgcc aatcgggcct tgggcttgag
     1801 acttcggccc ggaggcgatt taaggcggtg atgagccaga cgccccgcct actgcgcgcc
     1861 ctgtccgggg agatcctgga ccgtccaccg atctggttca tgcgccaggc cggccgctcg
     1921 ttgccggaat atctggagct gcggacccgg gccgccgact tcatcacctt ctgtcacaac
     1981 cccgagatgg ccgccgaggc cactctgcag cccatgcgcc gctttccgat ggatgcggcc
     2041 atcgtcttcg ccgacattct gctgatcccg ggcgcgctcg gccagaaggt gtggttcgag
     2101 gccggcgagg ggccgaggct gggcgaactg ccggacatcg cgcggatggc cgacgaggtg
     2161 gaggcctcca ccggccggct gtcggcgatc ggcgagacgc tggagcgggt gcgcgccgag
     2221 ctggagccgg accgggcgct gatcggcttt gcgggcggac cctggacggt tgcgacctac
     2281 atgatcgagg gtcggagctc gaaccgggaa gtggcccgca ccttcgccta cgaacatgcc
     2341 gacaagctag acgccctgct caaggtcctg gtcgactcca cggcccgcta cctgatcatg
     2401 caggccaagt cgggcgccca ggccctgcag atcttcgaga gctgggccga gggcctagcc
     2461 gaggacgtct tcgaacgcat cgtcatcggg ccgcacaagg ccatcgtcga acaggtccgc
     2521 gccgccggcg tcaccgtgcc cttcatcggc ttcccgcgcg gcgccggcgc cctggttgaa
     2581 aactacgcaa ggtccgtgcc ggtcgagggg gtggcgctcg acacccaggc cagcgccgac
     2641 ctcggccgcc ggctgcaggc aggcggcaag accatccagg gcgcgctcga caacctgctg
     2701 ctgcgggccg gcgggccggc gctggacgcc cgggtcgaaa gcctgctcgc ccagtggagc
     2761 gacggaccct acatcttcaa cctcggccat ggggttatgc cggacacacc catcgctcac
     2821 atcgcccgcg tcgtggagcg ggtcaccggc aagccggtga aggctatggc tcctcaggac
     2881 gcaagacggg cgtgaccagg cttgccatcg tcctgttcaa tctcggcggt ccggacagtc
     2941 tgaaggccgt aaagccattt cttttcaacc tgttccgtga tcccgccatc atcacctcac
     3001 cggcggtggt gcgctatccg ctcgccgccc tgatttccac gacgcgcgag aagaccgccc
     3061 aggccaacta cgcaatcatg ggcggcgcct cgcccctgct cgccgagacc ggcgcccagg
     3121 cccgggcgct ggaggcggcg ctgaaggcga aggacccgga cctcgaggcg cgctgcttca
     3181 tcgccatgcg ttactggaag cccttcgcga aggagaccgc ggcgcaggtg gcggcgttcg
     3241 cgcccgacga ggtggtcctg ctgccgctct atccgcagta ttcgaccacc acgaccggct
     3301 cgtcgctgaa ggactggctc ggggtctaca gggggccggg ccgcacgcgg accgtctgct
     3361 gctacccgac cgcccagggc ctgatcgcag cccacgccca ggcgatccgc gacgtctggg
     3421 acgctgccgg caagcccaag accgtacgcc tgctgttctc cgcccatggc ctgccgcaga
     3481 agatcgtcga tggcggcgat ccctaccgcg cccaggtcga ggccacggcg gcggccatcg
     3541 cggcccagct gccagagctt gccgactggc gggtctgttt ccagagcagg gtcggacgcc
     3601 tggcctggct cgcgccctat acggaagacg agatccgcgc ggcgggcgct gatggcaagg
     3661 gcgtattgat cgcccccatc gccttcgtct cggagcatgt ggagaccctg gtcgagctcg
     3721 accgggacta tgcgagactg gcggtggagg tcggctgcgc cccctatctg cgcgcgccga
     3781 cgcccggcat ccgcggcgcc ttcatcgagg aattggcccg tactgtgctc gaggccgccg
     3841 gccgggatgg cgggacggcg ccgcacgggc cttggcgctg tccggcgggc catgcgaaat
     3901 gcgcgctgaa gacggggaag gcggcctaga tgaactggta cgacctgctg cgcggcctgc
     3961 acatcatctc ggtgatcgcc tggatgagcg gcatgatgta cctgccccgg ctgttcgcct
     4021 accacaccga aaccgcgccg ccgggcagcg agttcgacgc gcacttcaag gtctgggagc
     4081 tgaagctcct gcggatcatc atcaacccgg cgatgacgct gaccttcatc ttcggcctgg
     4141 ggctgatctg ggtcgatggg agccagcggc ttggctgggg gttcctgctg cagacctgga
     4201 tggtggtgaa gatcgccggc atcgtcttcc tgaccgcttg gcacgggttc ctgtccggcg
     4261 cccggcgcaa gatcgccgcc ggcgaacggc ccaggaccgc caaattctgg cgcgccacca
     4321 acgagctgcc gttcctggcc gcggtggtca tggtcctggc cgtaaccctg gaattcaagt
     4381 tctggtgacc ccaga
//
LOCUS       DATAJL010000135         9084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27970,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000135 DATAJL010000000
VERSION     DATAJL010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9084
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27970"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..190)
                     /locus_tag="VHN39_02495"
     CDS             complement(<1..190)
                     /locus_tag="VHN39_02495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815233.1"
                     /translation="MHHHGLTGRQAAAVLMWGGPALSAIIVRLVTERSLAGIGFGLKS
                     PKWLWIALALPLAYGLPPY"
     gene            complement(286..1296)
                     /locus_tag="VHN39_02500"
     CDS             complement(286..1296)
                     /locus_tag="VHN39_02500"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2815234.1"
                     /translation="MRYGFWTPVFGGWLRNIPDEGMAATWDYTKKLCQRAEQIGYDLT
                     LVAELNLNDIKGTDQPALDAWSTAAALAAVTEKLELMVAVRPNFHQPALLAKQAANID
                     QISGGRLALNVVSSWWAEEATSYGLQFDQHDDRYGRTSEWLDVVDGLWREPKFTYEGA
                     RYQLKDAICEPKPVRKPVVYAGGESEAAKTLITNQCDAYVMHGDTVEVIAEKIADMRA
                     RRAAAGKPPMTFGMAAYAIVRDTEEEAREEVARITKLDPNAPGFGNYDQWLSGTQLER
                     EMKIQEYSVSNRGLRPNLIGTAAQVRERIAAYEAAGLDLLLLQMSPQYEEMDRFAAAV
                     IN"
     gene            complement(1293..2216)
                     /locus_tag="VHN39_02505"
     CDS             complement(1293..2216)
                     /locus_tag="VHN39_02505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-glutamate ligase"
                     /protein_id="HEX2815235.1"
                     /translation="MADLAVFYEHPQWFEALFATLDRRGLDWTAIPIQDHTFDPADTT
                     LPAPVILNRLAMSSFLRQEEHALFYSMAVLDHWQGLGARVINGPGVLAYDTNKARQLS
                     LFRKAGLDIPATRVAHRRADVPRLAAEIGYPVMVKVNVGGSGTGMIRYDSAEELEAAV
                     ADKLTPMGVDGVALVQAYVTARDARVIRCEVLDGKLLYALALDGAGSTFDLCPADVCM
                     VDKPTITISQYEPPPELARAVEKVARMSGLDVGGIEYMIDDRDGRAKFYDLNAMSNFV
                     AKPLEVLGWDPHDRLVDYLLPLIAAQQKVAA"
     gene            complement(2321..4339)
                     /locus_tag="VHN39_02510"
     CDS             complement(2321..4339)
                     /locus_tag="VHN39_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815236.1"
                     /translation="MAVFDRATRLAESLFEGSSASIILIHEGVVWRSQFAGSLPSEDP
                     MAEAVLASGDVLWIADGPTDPRVRDHPLVTGPPFLRFNASVPIRLQNGERPGVLSISG
                     AVPQAYDADKVARLTDLTDFLADEWARAQAARALAESVRERDAAMERTERSEERLNVA
                     LGLADLHVWELDYVRRELIKAGAEETFFADPQTYEGLYRDIYVTIDPRDRPAVEADWR
                     DHVENGAPYRPEYRIDRDDGREVWVQGSVKLFADARGRPQRLVGALQNITDRKHAEQA
                     LLQAKAEAEAANVAKSAFLATMSHEIRTPLNGVLGMAQAMAADELSPAQRERLGVIHQ
                     SGGALLSILNDILDLSKIEAGKLELEEIDFDLGQVARGSHATFASLADEKRVAFTLEV
                     DPAIGVYRGDPTRVRQILDNLTSNALKFTDAGEIRVTIGDSDGGLEIAVSDTGVGMSP
                     ETLQAIFHKFAQADSSTTRRFGGTGLGLAICRELAELMGGTIEAASRAGGGSCFTVRL
                     PLARVEAAPKAAATLAAEAPADVRDMARLHVLAAEDNAINRLVLQTLLLQVGVEPVMV
                     ENGAEAVAAWKDAAWDLILMDVQMPVMDGPTATRTIRGQEAVAGLRRTPIIGLTANAM
                     AHQVAEYRAAGMDAVVTKPIDAGQLFATLQAVLDGDGDDVQEAIRRPA"
     gene            complement(4556..5308)
                     /locus_tag="VHN39_02515"
     CDS             complement(4556..5308)
                     /locus_tag="VHN39_02515"
                     /inference="COORDINATES: protein motif:HMM:NF019128.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HEX2815237.1"
                     /translation="MALAFALPAVAAQEPSGELVLPTFDPLAEGPSAVAPFVLQTGGQ
                     ARASAVHCLTQAIYYEAGGEPRAGQQAVAQVVLNRMRHPGFPRSVCGVVFEGAERSTG
                     CQFTFTCDGSLALAPGAVRWRAAERVAIDALSGAIASEVGAATHYHAAWMTPYWSPSL
                     VETARIGGHVFYRLPGSRGEPAALTGRYSGDERVAPRPVIAAAKTEVAGRRRHRGGAD
                     ASNPGVNSFSVWGLQVATVSVKQGEVTVHSGS"
     gene            5455..6105
                     /locus_tag="VHN39_02520"
     CDS             5455..6105
                     /locus_tag="VHN39_02520"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF013632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A24 family peptidase"
                     /protein_id="HEX2815238.1"
                     /translation="MNLAAAAEVLGAVPAGCAAAWAGRRLTANAAPNLWAMIALEIAV
                     ALSAVVAAPAASVPALLVAGWSLGLLAAIDLMVLRLPDSLTLPLGAVGLLLGPRLLGT
                     PLLDHIVGAAAGYGVLALVAFVYARLRGREGLGLGDAKLLAVAGAWLGWIALPTVVVL
                     ASAGGLAWAAIRLLRRGRAGLDEPIAFGVLLCTAIWGCLLFATAGDGRIILTWPTS"
     gene            6090..7826
                     /locus_tag="VHN39_02525"
     CDS             6090..7826
                     /locus_tag="VHN39_02525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase, T2SS/T4P/T4SS family"
                     /protein_id="HEX2815239.1"
                     /translation="MAHVMIPRAADMDAQASILEAPPLGLIGLEALVASRGLVAPETL
                     ARARIVQAETGERFHSVLTRLGLVSEQALAQLIAEAVGLPIAVASDYPALPLATERVS
                     ERFLREFKAVLLRESDRGVDVALVDPLDPYPSRALELALGAQVFLSVARASDVETALE
                     RLYGAHAGDAFAIDGEADLADLERLKDMASDAPAIRAINRLIARAVEERASDIHLEAT
                     EDSLAVRFRVDGEMHDLEAFPATMRAPIVSRIKVMSGLNIAERRAPQDGRLRLAVRGH
                     DIDLRVATSPTINGESVVLRLLDRTNLTLDFAALGFEGEVLAKLREILARPNGVVLVT
                     GPTGSGKTTTLYAALNELNTPQRKILTIEDPIEYRLAGVNQTQVNPTIGLTFAAALRS
                     FLRQDPDVMMVGEVRDLETARVAVQAALTGHMILSTLHTNSAASAVTRLLDMGIEPFL
                     ITSTLSGVLAQRLVRRLCEECREPYVPIAPIETRAEDGEIRRIEIDRLYHPKGCPACN
                     GTGFRGRVALVELLVMDPAIARLVLDRAEAREVAAAAVAGSMRSMFDDGVMKARAGVT
                     TLEEVLRVTGEP"
     gene            7829..9043
                     /locus_tag="VHN39_02530"
     CDS             7829..9043
                     /locus_tag="VHN39_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEX2815240.1"
                     /translation="MATFRYRAATASGGLSAGLVEGASPGQVIDQLRRSGLTPIDVVE
                     TSPASRTAARLRSDAASRRTMTGAISELAVLLGADLTLDRALAICAENIVRPAEKAAF
                     VALHARVKEGAPLSRAMAEATDLFPPMASAMAEAGEANGRLDLALAKLAETLERTEAL
                     RQVVVSAMVYPAILMVIATGVILTMLLWVIPQFEGLFSDAGATLPFMTRLVMGVSHAV
                     RTYGLAGLLVGGAGAALLVRWTRRPAMRATFDRWVLGLPQIGALVTTSQLGLFARVLS
                     NLIEGGVPLPEALSIAQRSLTNTHVSAAVGRVVASVKQGGALTASLSAESVFPRGALS
                     FIRTGEETAQLGPMLGRLADVMDRDLRRKVEGLIALLTPLITVLMGAIVATVIASIMT
                     AILGFNDLALSQ"
BASE COUNT         1285 a         3048 c         3238 g         1513 t
ORIGIN      
        1 ggtagggcgg caggccatag gcaagcggga gcgcgagcgc gatccagagc cacttggggc
       61 tcttcaggcc aaagccgatg cccgccaggc tgcgctcggt cacgagccgc acgatgatcg
      121 ccgagagcgc cggcccgccc cacatcagga ccgcggcggc ctggcggccc gtcaggccgt
      181 gatggtgcat gccgaggtaa tagccgggga ggctgaggac cgccgtcagg acgcaatagg
      241 cgacgatctt gccccaggcg gcgcgccgcg ttgtgtcggt ggagctcagt tgatcaccgc
      301 cgcggcgaag cggtccattt cctcatactg cgggctcatc tgcaggagca ggaggtcgag
      361 gccggcggcc tcgtaggcgg cgatgcgctc gcggacctgg gcggccgtgc cgatcaggtt
      421 tgggcgcagt ccgcggttgg agacggagta ttcctggatc ttcatctcgc gctcgagctg
      481 ggtgccggag agccactgat cgtagttgcc gaagcccggc gcgttggggt cgagcttggt
      541 gatccgggcg acctcttcgc gggcctcttc ctcggtgtcg cggacgatgg cgtaggcggc
      601 catgccaaac gtcatgggcg gcttgcccgc ggcggcgcgg cgggcgcgca tgtcggcgat
      661 cttctcggcg atcacctcga cggtgtcgcc gtgcatgaca taggcgtcgc actggttggt
      721 gatcagggtc ttggcggcct cggactcgcc gccggcgtag accacgggct tccgcacagg
      781 cttcggctcg cagatggcgt ccttcagctg gtagcgggcg ccttcgtagg tgaacttggg
      841 ctcgcgccag aggccgtcga ccacgtccag ccattcggac gtgcgtccat agcggtcgtc
      901 gtgctggtcg aactgcaggc cgtagctggt ggcctcttcc gcccaccagg aggagaccac
      961 gttcagcgcc aggcgcccac cggagatctg gtcgatgttg gcggcctgtt tggccagcag
     1021 ggccggctgg tggaaattgg gccggacggc gaccatcagc tccagcttct cggtgaccgc
     1081 ggcgagcgcg gcggccgtgg accaggcgtc cagcgccggc tggtcggttc ccttgatgtc
     1141 gttgaggttg agttcggcca ccagcgtcag gtcgtagccg atctgctcgg ctcgctggca
     1201 gagcttcttg gtgtagtccc aggtcgccgc catgccctcg tcggggatat tgcgcagcca
     1261 gccgccgaag accggggtcc agaaaccgta tctcatgcgg cgaccttctg ttgcgcggcg
     1321 atcaagggga gcaggtagtc gaccagccgg tcgtgcgggt cccagcccag cacctccagc
     1381 ggcttggcga cgaagttcga catcgcgttg aggtcgtaga atttcgcgcg gccatcgcgg
     1441 tcgtcgatca tgtattcgat gccgcctacg tcgaggccgc tcatcctggc gaccttctcg
     1501 acggcgcggg ccagctccgg cggcggctcg tactggctga tggtgatggt gggcttgtcg
     1561 accatgcaga cgtcggccgg gcagaggtcg aaggtcgagc ccgcgccgtc gagcgccagg
     1621 gcgtagagca gcttgccgtc cagcacttcg cagcggatca cccgggcgtc gcgggcggtg
     1681 acgtacgcct gcaccagggc tacgccgtcg acgcccatag gggtcagttt gtcggccacc
     1741 gcggcctcca gctcttcggc gctgtcatag cggatcatgc ccgtgccgga cccgcccaca
     1801 ttgaccttca ccatcaccgg atagccgatc tcggcggcca ggcgcggcac gtcggcgcgg
     1861 cggtgagcga cgcgggtcgc agggatatcg aggccggcct tgcggaagag cgagagctgg
     1921 cgggccttgt tggtgtcgta ggccagcacg cccggcccgt tgatcacccg cgcgcccagg
     1981 ccttgccagt ggtcgaggac agccatggag tagaagaggg cgtgttcttc ctggcgcagg
     2041 aaggaggaca tcgcgaggcg attgaggatc accggcgccg gcagggtcgt gtccgccggg
     2101 tcgaaggtgt ggtcctggat ggggatggcg gtccagtcga ggccccgccg gtccagggtg
     2161 gcgaacaggg cctcgaacca ctgcgggtgt tcgtagaaga cggcgagatc ggccaattgg
     2221 ggtctccggg cgctctgccg cgcgggtttc cccgcgcgtc aacgaccaga tagttcactc
     2281 ggcggcgttt ggcatccccg atcgcgaagg cgagggttgg tcaggcgggc cgccggatcg
     2341 cctcctgcac gtcgtcgcca tcgccatcga ggacggcctg cagggtcgcg aacagctggc
     2401 ccgcgtcgat cggcttggtg accaccgcgt ccatccccgc ggcgcgatat tcggcaacct
     2461 gatgggccat ggcgttggcc gtcaggccga tgattggggt gcggcgcagg ccggcgacgg
     2521 cttcctggcc tcgaatggtc cgggtggcgg tcgggccgtc catgaccggc atctgcacgt
     2581 ccatcaggat gaggtcccac gccgcgtcct tccaggcggc caccgcctcg gcgccgttct
     2641 cgaccatgac cggctccacc ccgacttgaa gcagtagggt ctgcagcacc agccggttga
     2701 tcgcattgtc ttcggcggcc aggacgtgaa gccgggccat gtcgcggacg tcggccggcg
     2761 cttcggcggc gagtgtcgcg gcggccttcg gcgcggcctc cacccgggcc aggggaagcc
     2821 tgaccgtgaa acaggacccg ccgccggccc ggctggccgc ctcgatggtt ccgcccatga
     2881 gctcggccag ttcgcgacag atcgccagac caagcccggt gccgccgaag cgccgcgtcg
     2941 tcgaggaatc cgcctgggcg aacttgtgga agatcgcctg gagcgtctcc ggcgacattc
     3001 ccacgccggt gtcgctgacc gcgatctcca gtccgccgtc gctgtcgccg atggtcaccc
     3061 ggatttcgcc ggcgtcggtg aatttcagcg cgttcgaggt caggttgtcg aggatctggc
     3121 gaacccgcgt cgggtcgccg cgatagactc cgatcgctgg gtcgacctcg agtgtgaagg
     3181 ccacacgctt ctcgtcggcc aggctggcga aggtggcgtg cgaaccgcgc gcgacctggc
     3241 ccaggtcgaa atcgatctcc tcgagctcga gcttgccggc ctcgatcttg gagaggtcga
     3301 ggatgtcgtt caggatactc agcagcgccc cgcccgactg atggatcaca cctagccgct
     3361 cgcgctgagc cggcgacaac tcatcggccg ccatggcctg ggccatgccg aggacgccgt
     3421 tcagcggggt gcggatctcg tggctcatgg tcgccaggaa ggcgctcttg gccacgttgg
     3481 ccgcctcggc ttcggccttg gcctgcagca gcgcctgctc ggcgtgcttg cggtcggtga
     3541 tgttctgtag ggcgcccacc aaccgttgtg gccgcccgcg cgcgtccgcg aacaacttca
     3601 ccgacccctg cacccagacc tcgcggccat cgtcgcggtc gatgcggtat tccggccgat
     3661 agggtgcgcc gttttccacg tggtcgcgcc agtccgcctc caccgcggga cggtcgcgcg
     3721 gatctatggt gacgtagatg tcccgataga ggccctcata ggtctgtggg tcggcgaaga
     3781 aggtctcctc ggcgccagcc ttgatcagct cgcggcggac atagtccagc tcccagacgt
     3841 gaagatccgc caggcccagc gccacgttga gccgctcttc cgaccgctcg gtcctctcca
     3901 tggcggcgtc acgctcgcgc accgattcgg cgagtgcgcg ggcggcctgg gcacgcgccc
     3961 actcgtcggc caggaaatcg gtcagatcgg tcagccgggc gaccttgtcg gcgtcgtagg
     4021 cctggggaac cgcccccgat atgctgagga cgccggggcg ttcgccgttc tgcaggcgga
     4081 tgggaaccga tgcgttgaag cgcaggaacg gcggcccggt caccagagga tggtcgcgga
     4141 cgcgtgggtc ggttggcccg tcggcgatcc agagcacgtc gccactggcc agcaccgcct
     4201 cagccatggg gtcttcgctc ggcaggctgc ctgcgaactg gctgcgccag accacgccct
     4261 cgtggatcag gatgatgctg gcgctggagc cctcgaagag gctctcggcg agccgcgtgg
     4321 cgcgatcgaa cacggccatg gagaggtcga gtccgaacgg cgccgctgtg ggagaggcag
     4381 atcggccgcg tcctggatct tgtggcatgg gtgcggcctg agtacgcgac gaaccttcag
     4441 tattgcccgg gcactgttta cgaagcggtc ctggcgtcct ggaccgattg acgcagcggc
     4501 gcggcgggcc cttgggcgtt cgccccctgg gaagcctacg gatgacggcc gtgcgtcagg
     4561 agccgctgtg aacggtcact tctccttgtt tcacggaaac cgtcgcgacc tgcaggcccc
     4621 agacgctgaa gctgttgacc ccggggttcg acgcgtcggc gccgccgcgg tggcgcctcc
     4681 ggccggcgac ctcggtcttg gccgccgcaa tgacagggcg cggcgcaaca cgctcatcgc
     4741 cgctgtagcg gcccgtcagc gccgcaggct cgccgcgcga gcctggcagg cggtagaaga
     4801 cgtggccgcc gatccgcgcg gtttccacca gagacgggct ccagtacggg gtcatccagg
     4861 cggcgtgata gtgggtggcg gcgccgactt cgctggcgat ggctccggat agcgcgtcga
     4921 tcgccacccg ttcggcagcg cgccacctca cggcccctgg cgccaaggcc agcgatccgt
     4981 cgcaggtgaa cgtgaactgg cagcctgtgc ttcgttcggc gccctcgaac accacgccgc
     5041 agacggatct tgggaagcct ggatgccgca tccggttcag gacgacctgg gcgaccgcct
     5101 gctgcccggc gcggggctcg ccgccggcct cgtaatagat ggcctgggtc aggcaatgga
     5161 ccgcgctcgc cctcgcctgg ccgcctgtct gcagcacgaa gggcgcgaca gcggatgggc
     5221 cttcggcgag gggatcgaag gttggcagga ccagctcccc tgacggctcc tgcgcggcga
     5281 cggccggcaa cgcgaacgcc agggccacgg ccagggccga cggagcaccc catcgaccca
     5341 gcgtcgccca gcgatatcgg cctctcagaa ccaacggatt ttgcgcccct cagcgagcct
     5401 ctatagtccc gatcctaatc cggcccggag gtgagggcaa aggagtcagt gcggatgaat
     5461 ctggcggcgg ccgcggaggt cctgggcgcg gtcccggccg ggtgcgccgc cgcctgggcg
     5521 ggacgccggc tgacggcgaa cgccgcgccg aacctgtggg ccatgatcgc gctcgagatc
     5581 gctgtcgccc tctcagcggt cgtggcggcg cccgcggcgt ccgtgccagc gctcctcgtc
     5641 gccggctggt ccctgggcct gctggcggct atcgacctca tggtcctgcg gttgccggac
     5701 agcctgaccc tgcctctggg tgcggttggg ctgctcctgg ggccccggct cttggggaca
     5761 ccgcttctcg accacatcgt cggagccgcc gccggctacg gcgtcctggc gctcgtggcg
     5821 ttcgtctacg cccggcttcg gggccgcgag ggcctgggcc tgggcgacgc caagctgctc
     5881 gcggtggccg gggcgtggct gggctggatc gcgctgccca ccgtcgtcgt gctggccagc
     5941 gccggcgggc tggcctgggc cgccattcgc ctgttgcggc gcgggcgcgc aggtctggac
     6001 gaaccgatcg ctttcggcgt gcttctctgc acggcgatct ggggctgtct gctgttcgcg
     6061 acagccgggg acggtcgcat aatcttgact tggcccacgt catgatcccc cgtgctgccg
     6121 atatggacgc gcaggcatca atccttgaag cgccgccact cgggcttatc ggactggaag
     6181 cactggtggc gtcgcgcggc cttgtggcgc cggagaccct ggcgcgcgcg cggatcgtgc
     6241 aagcggaaac cggcgaacgc tttcactccg ttctgacccg cctgggcctg gtgtccgagc
     6301 aggcgctggc ccagctgatc gccgaggctg tcggcctgcc gattgccgtg gcgagcgact
     6361 acccggcgct tccattggcc accgagcggg tgtcggagcg gttcctgcgg gagtttaagg
     6421 ccgtgctgct ccgagaaagc gaccgaggag tggacgtcgc ccttgtcgac ccgctggacc
     6481 cctatccgtc gcgcgctctg gagctcgcgc tgggcgcgca ggtgttcctc agcgtggcgc
     6541 gcgccagcga tgtcgaaacc gcattggaac gcctctacgg cgcccacgcc ggcgacgcct
     6601 tcgccatcga tggtgaagcc gacctggcgg acctggagcg gctgaaggac atggccagcg
     6661 acgcgccggc gattcgggcc atcaaccggc tgatcgcccg cgcggtcgag gagcgcgcct
     6721 ccgatatcca tctcgaggcg accgaggaca gcctggcggt gcgtttccgc gtcgatggcg
     6781 agatgcacga cctggaggcg tttccggcga ccatgcgcgc gcccatcgtc tcgcggatca
     6841 aggtgatgtc cggactcaat atcgccgagc ggcgggcgcc tcaggacggg cgcctgcggc
     6901 ttgcggttcg gggccacgac atcgacctgc gggtcgcgac gtcgccaacc atcaacggcg
     6961 agagcgtcgt gctgcgcctc ctcgaccgca ccaatctgac gctcgacttc gccgcgctgg
     7021 ggttcgaggg cgaggttctg gcgaagctgc gtgagatcct ggcgcggccc aacggcgtcg
     7081 ttctggtcac cggcccgacc ggcagcggca agacaacgac cctctacgcg gccctgaatg
     7141 agctcaacac gccacagcgc aagatcctga ccatcgagga cccgatcgag taccggctgg
     7201 cgggcgtcaa ccagacgcag gtcaatccga caatcggctt gacgttcgcc gcggcgctgc
     7261 gctcgttcct ccgccaggat cccgacgtga tgatggtcgg cgaagtgcgc gatctggaga
     7321 ccgcccgcgt ggccgtgcag gccgcgctga cgggacacat gatcctctcg acgctgcaca
     7381 ccaacagcgc cgcaagcgcg gtgacccggt tgctggacat gggcatcgag ccgttcctga
     7441 tcacctcgac gctgagcggt gtgctggccc agcgcctggt gcgccggctt tgcgaggagt
     7501 gccgcgaacc gtatgtcccg atcgcgccca tcgaaacgcg cgccgaggat ggcgaaatcc
     7561 ggcggatcga aattgatcgc ctttaccatc cgaagggctg cccggcctgc aacgggacag
     7621 gattccgcgg ccgcgtggcg cttgtcgaac tcctggtcat ggacccggcg atcgcgcggc
     7681 tcgtgctgga tcgggcggag gcccgcgagg tcgccgccgc cgctgtcgcc ggctcgatgc
     7741 gcagcatgtt cgacgacggc gtgatgaagg cgcgggccgg ggtcaccacg cttgaggaag
     7801 tcctgcgcgt gacgggggaa ccctaggcgt ggccaccttt cgctaccgcg ccgcgacggc
     7861 ctccggcggg ctgagcgccg ggctggtgga gggcgcatcc cccggccagg tgatcgatca
     7921 attgcgccgg tccggcctca cgccgatcga cgtggtcgag acgtcgcccg cgtccaggac
     7981 ggctgcgcgg ctgcggtccg acgcggcctc gcgccgcacg atgacagggg cgatcagcga
     8041 gctcgccgtg ctcctggggg ctgacctgac gctggaccgc gcgctcgcga tctgcgccga
     8101 gaatatcgtg cggccggccg agaaggccgc cttcgtcgcg ctccacgccc gggtcaagga
     8161 aggcgcgccg ctgtcgcgcg ccatggcgga ggctaccgac ctgttcccgc ccatggcgtc
     8221 ggcgatggcg gaggcgggag aggcgaacgg acgcctcgac ctcgccctgg ccaagctggc
     8281 cgaaacgctg gagcgcaccg aagccctgcg ccaggtcgtc gtctcggcca tggtctatcc
     8341 ggccatcctg atggtcatcg ccaccggggt gatcctcacc atgctgctgt gggtcatccc
     8401 gcagttcgag ggcttgttca gcgacgccgg cgcgacgctg ccgttcatga cgcgcctggt
     8461 gatgggcgtc agccacgcgg tgcggaccta tggcctggcg ggcctgctgg tcggtggggc
     8521 cggggcggcg ctccttgtca gatggacgcg ccgtcccgcg atgcgcgcga ccttcgatcg
     8581 gtgggtgctt ggtttgccgc agatcggagc cctggtcacg acgtcccaac tggggctttt
     8641 cgcccgtgtc ctgagcaatc tgatcgaagg cggcgtgcct ttgccggagg cgctgtcgat
     8701 cgcccagcgc tcgctgacca acacccatgt ttcggcggcg gtgggacggg ttgtggcgag
     8761 cgtgaagcag ggcggcgcgc tgaccgcctc gctgtccgcg gaaagcgttt ttccacgtgg
     8821 cgcgctcagc ttcatccgca ccggcgaaga gacggcgcag ctgggtccga tgctcgggcg
     8881 cctggctgac gtgatggatc gcgaccttcg ccgaaaggtc gaagggttga tcgcgcttct
     8941 gacgccgttg atcactgtgc tcatgggcgc catcgtggcc accgtgatcg cttcgatcat
     9001 gacggccatc ctcggcttca acgacctggc gctttcgcaa tgacccaatc ccgccgatct
     9061 gcgcgcctgg ctcggtccgg agac
//
LOCUS       DATAJL010000136         1601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_15162,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000136 DATAJL010000000
VERSION     DATAJL010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15162"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..>1601)
                     /locus_tag="VHN39_02535"
     CDS             complement(171..>1601)
                     /locus_tag="VHN39_02535"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2815241.1"
                     /translation="ALYREGDLAASPDHARDPGSVGQASWPVDQYLEDASGLRGHAER
                     VIIPATEWEVIAALREATAARIPVTIAGAGTGVTGARVPFGGWVLSLEKFKHLEIHVG
                     SAIAGAGVLLRDLHAAAFRSGQFYPPDPTETGSAIGGNIATNASGARSFRYGATRRWV
                     ERLRVVLADGSVRDAARGEAIDFDPGTVPLPHVTKNTAGYLLRPGMDWVDLFIGSEGT
                     LGVVTQATLRLLPAPAAVLAGVVFFPADDAAIDAVEAWRATSSARMLEYIDRPSLNLL
                     RARFPEIPAEAGVAILFDQDLTSEDDPEVDHWLDRIQAAGALVEASWFATSAADRERF
                     RQFRHSLPELVNETVRRSGATKMHSDYAVPLARNREMLAYYRRRLDAEFPGRYVIFGH
                     IGDAHVHVNIFSDPANPAQASDLLLEFARHAVELGGTVSAEHGVGKRKAHLLKLQYST
                     EDLEKMRAVKCRLDPENILGRGTVLE"
BASE COUNT          281 a          470 c          592 g          258 t
ORIGIN      
        1 ggagagctcc gtccacgcgg ggacggcgta gggggcggct ttggcagggt tgcgggtaac
       61 gatgccggcc agttggctgc gcggttcggc caggatggcg ggcagaacgc gtttggtggt
      121 gatgtcgccg atacccacga ccagccagcg cagcatacct gtatagtaaa ttactccaat
      181 acggtcccgc ggccgaggat gttttcgggg tccaagcggc acttcacggc ccgcatcttt
      241 tccagatcct cagtcgagta ttggagcttc agcaggtgcg ccttgcgctt gcccacgcca
      301 tgttcggcgg aaacggtgcc gccgagttcg acggcgtggc gggcgaactc gagcagcagg
      361 tccgaggcct gcgccggatt cgcgggatcg gaaaatatgt tgacgtgaac gtgagcgtcg
      421 ccgatgtggc cgaagatgac ataccggccg ggaaattccg cgtctaggcg gcggcggtag
      481 tacgccagca tctcacgatt gcgcgcgagc ggaacggcgt aatcggaatg catcttggtg
      541 gccccgctgc ggcggacggt ttcgttgacc aactccggga gcgagtggcg gaactggcgg
      601 aagcgctcgc ggtccgccgc cgaagttgcg aaccacgaag cctccaccag ggcgccggcg
      661 gcttggatgc ggtcgagcca atgatccact tcgggatcgt cttcagaggt gaggtcctgg
      721 tcgaagagga tggccacgcc ggcttcggcc gggatctcgg ggaagcgcgc gcgcaacagg
      781 ttgagcgaag gccggtcgat gtattccagc atgcgggcgg aagaggtggc gcgccaggct
      841 tcgacggcgt caatcgcggc gtcatcggcc gggaagaaaa ccacaccggc cagaacggcg
      901 gcgggcgcgg gcagcaggcg caaggtggcc tgagtgacga cgccgagcgt gccctcggat
      961 ccgatgaaga ggtccaccca atccatgccg gggcgcagca ggtagccggc ggtgttcttg
     1021 gtgacgtgcg gaagcgggac tgtgcccggg tcgaaatcga tcgcctcgcc gcgggcggca
     1081 tcgcggacgg aaccatcggc cagcaccacg cgcaggcgct ccacccagcg gcgggtggcc
     1141 ccgtaccgga aactgcgggc gccgctggca ttggtggcga tgttgccgcc gatggcggag
     1201 ccggtctcgg ttgggtcggg cggatagaat tggccgctgc ggaatgcggc ggcatggagg
     1261 tcgcgcagca ggacgcccgc gcctgcgatg gcagacccca cgtggatttc caggtgcttg
     1321 aatttttcga gcgacagcac ccaaccgcca aaggggacgc gggcgccagt gactccggtg
     1381 ccggctccgg caatggtgac gggaattcgg gcggcagtgg cttcgcggag cgcggcgatg
     1441 acttcccatt cagtggcggg aatgattacc cgctcggcat ggccgcggag gccggaggcg
     1501 tcttccaggt attgatcgac aggccaggag gcctgtccta cacttccagg atcacgggca
     1561 tgatcagggg acgccgcgag gtctccttca cgatatagcg c
//
LOCUS       DATAJL010000137         4078 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41011,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000137 DATAJL010000000
VERSION     DATAJL010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41011"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1471)
                     /locus_tag="VHN39_02540"
     CDS             complement(<1..1471)
                     /locus_tag="VHN39_02540"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEX2815242.1"
                     /translation="MADDTGNLQGRLIGKPATRIEGALKVTGQARFASDEAPANPAYA
                     VLVTSAIARGRVRGMKLDAARAVPGVLDILTHANVGSEIKPPIGPDQGPTTTTMESDR
                     VWHDGQIIGIVLADTYEAAREAAYRVTVDYETETPSATFDSPGAETEPKKATPESPPP
                     AKGDAAAAFASAAVKVDARYSTPAQHHNPMELFTTTCVWEGPKLTIYEPTQSMYGLRG
                     AVARQLGLDPANVRTVSRYVGGGFGSRGSATARTAWIAVAARRLKRPVKLVPTRAQGF
                     TIATYRAETRHHLQLGADRRGKLVSLSHEGWEVTSRPSKYNVSGTATTARMYASPNIA
                     TKVSVVHADRNTPGFMRAPPDTPYMFALECGMDELAYALEMDPVELRRINDTQTDPVD
                     GKPFSSRALMKCFDQAAARFGWAKRNPKPGSMRDGDWLVGLGCATSCYPSNIGPAAAR
                     LSLTPQGKATIQMAGHEIGTGAYTVVAIVVADRLGLRIED"
     gene            complement(1474..2466)
                     /locus_tag="VHN39_02545"
     CDS             complement(1474..2466)
                     /locus_tag="VHN39_02545"
                     /inference="COORDINATES: protein motif:HMM:NF013134.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEX2815243.1"
                     /translation="MRPFHYEHAANRTQALKAAAATGAHYLAGGTTLIDLMKLDVMRP
                     TTVVDINALAGEHSEIRLDGDHLRLGALARMSDVADDPAVRRDYPMIAQSLELAASPQ
                     IRNMASLGGNVLQRTRCTYFRDTSWNACNKRNPGSGCAAAEGVNRKLAVLGAGDHCIA
                     NYPGDFAIALAALGATVDLEGPAGRRVIPFEELHRLPGDTPHLETTLKPGELITGFSV
                     PAGPWTRRSLYLKIRDRQSYEFALTSAAVALDLDGGTVRASRIGLGGVAAKPWRSHEA
                     EATLQGRRFDETTARAAAEAAFTGAVAHGQNAFRIELGRRTLVRALIQAGRMEV"
     gene            complement(2466..3086)
                     /locus_tag="VHN39_02550"
     CDS             complement(2466..3086)
                     /locus_tag="VHN39_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX2815244.1"
                     /translation="MAQDTGFERGPSRRGLLTGATGAAALPLIAAAPEPAAHAGRPGR
                     EPRMDMTLRINGRDHRVALDPRTTLLDALREHLQLTGSKKGCDHGQCGACTVHIDGRR
                     VLACLTLAAAVQGRPVTTIEGLAQGEALHPMQAAFIKHDAFQCGYCTPGQIMSAVACV
                     HEGHAANDEAIRDYMSGNLCRCAAYPKIVAAIREAAPQTAAKTGPA"
     gene            complement(3153..>4078)
                     /locus_tag="VHN39_02555"
     CDS             complement(3153..>4078)
                     /locus_tag="VHN39_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX2815245.1"
                     /translation="LDDLNAYYDPALKAARLAILEQHVGYRHAKIDLADRVRVPALFA
                     EVKPEAVVNLAAQAGVRYSLESPATYVDSNVVGFLNILEGCRAVQPKHLVFASTSSVY
                     GANGNLPFNVHNGANHPITLYAATKLANEAMAHSYAHLFGIPSTGFRFFTVYGPWGRP
                     DMALFKFTEAILAGRPIDVYGEGKMQRDFTYVADIVDGLVAAIDRPAKINPAWDPLKP
                     DPATSGVAPWRVLNLGASQRVELMRYIQVLEEKLGRKATLNLLPMQPGDVARTEADVE
                     ETRLALDYAPSTPSEVGIGAFVDWYLDYFGK"
BASE COUNT          540 a         1265 c         1605 g          668 t
ORIGIN      
        1 cgtcctcgat ccgcagcccc agccggtcgg cgacgactat ggctacgacc gtgtaggcgc
       61 cggtgccgat ctcgtggccg gccatctgga tcgtggcctt gccctgcggc gtcagcgaca
      121 gccgcgcggc ggccgggccg atgttggacg ggtagcagga agtggcgcag cccaggccga
      181 ccagccagtc gccgtcgcgc atcgagcccg gtttcggatt gcgcttcgcc cagccgaacc
      241 gggcggcggc ctggtcgaag catttcatca gggcgcggct tgagaagggc ttgccatcga
      301 ccggatcggt ctgggtgtcg ttgatccgcc gcagctcgac cggatccatc tccagggcgt
      361 aggcgagctc gtccatgccg cattcgagcg cgaacatgta gggcgtgtcc ggcggggcgc
      421 gcatgaagcc tggcgtgtta cggtcggcgt gaacgacgct gaccttggtc gcgatgttgg
      481 ggctggcgta catccgcgcg gtcgtggccg tgccggagac gttatacttc gagggccgtg
      541 aggtgacttc ccagccctcg tggctgagcg agaccagctt gccgcggcgg tcggcgccca
      601 actgcagatg gtggcgcgtt tcggccctgt aggtggcgat ggtgaagccc tgggcgcggg
      661 tggggaccag cttgaccggc cgcttcaggc gccgcgcggc cacggcgatc caggcggtgc
      721 gcgcggtggc cgatccgcgc gagccgaacc cgccgcccac atagcgtgag acggttcgca
      781 cattggcggg gtccaggccg agttgccggg ccacggcgcc cctcagtccg tacatcgact
      841 gggttggctc atagatggtg agcttgggtc cctcccagac acaagtggtg gtgaagagtt
      901 ccatcgggtt gtggtgctgg gcgggcgtcg aatagcgggc gtcgaccttg acggccgcgc
      961 tggcgaaagc ggccgcggcg tcgcccttgg ccggcggcgg cgactccggc gtggccttct
     1021 tgggctcggt ttcggcgccg gggctgtcga aggtggcgct gggggtttcg gtctcgtagt
     1081 cgacggtgac ccggtaagcg gcctcgcggg cggcctcgta ggtgtcggcc agcacgatgc
     1141 cgatgatctg gccgtcgtgc cagacgcggt cgctctccat ggtggtcgtg gtcgggccct
     1201 ggtcggggcc gatgggaggc ttgatctcag acccgacgtt ggcgtgggtc aggatgtcga
     1261 gcacgccagg cacggcgcgg gcggcgtcca gcttcatgcc gcgcacgcgg ccccgggcga
     1321 tcgcgctggt caccaggacg gcgtaggcgg ggttggccgg cgcctcgtcc gaggcgaagc
     1381 gcgcctggcc ggtgaccttg agcgccccct cgatccgggt ggcgggcttg ccgatcaggc
     1441 ggccctgcag gtttccggtg tcgtcggcca tgttcagacc tccatccggc cggcctggat
     1501 gagcgcgcgg accagggtcc gcctgccgag ctcgatgcgg aaggcgttct ggccgtgggc
     1561 gaccgccccg gtgaaggccg cctcggcggc ggcgcgggcc gtggtctcgt cgaaccggcg
     1621 cccctgcagg gtcgcctcgg cctcatgtga gcgccagggc ttggcggcga ccccgcccag
     1681 gccgatccgg gacgcgcgca cggtcccgcc gtcgaggtcg agcgcgacgg cggcggacgt
     1741 gagggcgaac tcgtaggact ggcggtcgcg gatcttcaga tagagcgaac ggcgggtcca
     1801 aggaccggcc gggacgctga agccggtgat cagctcgccg ggcttgaggg tcgtctccag
     1861 gtgcggggtg tcgccgggca ggcggtggag ctcttcgaag gggatcacgc gtcggccggc
     1921 gggaccttcc agatcgacgg tggccccgag cgcggcgagg gctatggcga agtcgccagg
     1981 atagttggcg atgcagtggt cgccggcgcc gaggacggcg agcttacgat tcacgccctc
     2041 cgcggccgcg cagccggagc cgggattgcg cttgttgcag gcgttccagc tggtgtcacg
     2101 gaagtaggtg cagcgggtgc gctgcaggac gttgccgcca aggctggcca tgttgcggat
     2161 ctgcgggctg gccgccagct cgagggactg ggcgatcatc gggtagtcgc ggcggacggc
     2221 cgggtcgtcg gcgacatcgg acattcgggc gagcgcgccc aggcgaagat gatcgccgtc
     2281 gaggcggatc tcgctgtgct cgccggccag cgcattgatg tcgaccaccg tcgtgggtcg
     2341 catgacgtcg agcttcatca ggtcgatgag cgtggtgccg ccggcgaggt agtgcgcgcc
     2401 cgtcgcagcg gcagccttca gcgcctgggt gcggttggcg gcatgttcgt agtggaaggg
     2461 gcgcatcagg cgggcccggt cttggcggcc gtctgtgggg ccgcctcgcg gatcgcggcg
     2521 acgatcttgg ggtaggcggc gcagcggcag aggttgccgc tcatatagtc gcggatggcc
     2581 tcgtcattgg cggcatggcc ctcgtggacg caggcgacgg ccgacatgat ctggcccggc
     2641 gtacagtagc cgcactgaaa ggcgtcgtgc ttgatgaagg ccgcctgcat ggggtgcagg
     2701 gcctcgccct gggccaggcc ctcgatggtg gtgactgggc ggccctggac ggcggcggcg
     2761 agggtcaggc aggcgaggac gcggcggccg tcgatgtgga cggtgcaggc gccgcactgg
     2821 ccgtggtcgc agcccttctt ggagccggtg agctgcagat gctcgcgaag ggcgtcgagc
     2881 agggtggtgc gcggatcgag cgcgacgcgg tggtcgcggc cgttgatcct tagggtcatg
     2941 tccatgcgcg gctcccgtcc ggggcgcccg gcgtgcgccg ccggctcggg cgcggcggcg
     3001 atgagcggca aggcggctgc gccggtcgcg ccggtcagca aaccccgtcg gctggggccg
     3061 cgctcgaagc cggtatcctg cgccatggcg tcctctcgtc tcgcgcccac cgtcaaaacc
     3121 cgacgcggcg caggcggttc cggaacgcgg cgctacttgc cgaagtagtc gaggtaccag
     3181 tccacgaagg cgccgatccc gacctcgctc ggggtcgagg gcgcgtagtc gagggcgagc
     3241 ctggtttcct cgacgtcggc ctcggtgcgg gccacgtcgc cgggctgcat ggggagcagg
     3301 ttcagcgtgg ccttccggcc cagcttttcc tccagcacct ggatgtagcg catcagttcg
     3361 acgcgctggc tggcgccgag gttcagcacg cgccacgggg cgacgccgct ggtggcggga
     3421 tccggcttca gcgggtccca ggcgggattg atcttggccg ggcggtcgat ggcggcgacc
     3481 aggccgtcga cgatgtcggc gacataggtg aagtcgcgct gcatcttgcc ctcgccatag
     3541 acgtcgatgg ggcggccggc gaggatcgcc tcggtgaact tgaagagcgc catgtccggc
     3601 cggccccagg gtccgtagac cgtgaagaac cggaagccgg tcgaggggat gccgaacagg
     3661 tgggcgtagc tgtgcgccat ggcttcgttg gcgagcttgg tggcggcgta gagggtgatc
     3721 gggtggttcg cgccattgtg cacgttgaac ggcaggttgc cgttggcgcc atagaccgag
     3781 ctggtggagg cgaagaccag gtgcttcggc tgcaccgcgc ggcagccctc caggatgttc
     3841 aggaacccga cgacgttgga atccacatag gtcgcggggc tttccaagct gtagcggacg
     3901 ccggcctggg cggcgaggtt gaccaccgcc tcgggcttca cctcggcgaa cagagccggg
     3961 acgcggacgc ggtcggccag gtcgatcttc gcgtggcgat aaccgacgtg ttgttcgagg
     4021 atcgccaggc gggcggcctt gagagccggg tcgtagtagg cgttgagatc atccaggc
//
LOCUS       DATAJL010000138         4013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_27983,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000138 DATAJL010000000
VERSION     DATAJL010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4013
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27983"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..270
                     /locus_tag="VHN39_02560"
     CDS             <1..270
                     /locus_tag="VHN39_02560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815246.1"
                     /translation="DDKWLFSRSRIEFSARAAGFAGVQFVPHNDHPSLYRDVAGVHFR
                     LATGRDDLALPEWAMSILDSFDAAITLNAKRELMLEGTIVLTKGS"
     gene            354..647
                     /locus_tag="VHN39_02565"
     CDS             354..647
                     /locus_tag="VHN39_02565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815247.1"
                     /translation="MRGAAILVVWVLCAGCGQVADAQAKLVSDLRVKDAIGDYEKAGR
                     THNLLDECVKAKLVSGAYADARDTADSQAWLARSQEDCRAAAAQLHAKPPAKS"
     gene            complement(656..1327)
                     /locus_tag="VHN39_02570"
     CDS             complement(656..1327)
                     /locus_tag="VHN39_02570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2815248.1"
                     /translation="MSDLTPDDTTEIAADEETHAATKAAVFGAAERLFALHGFQNVSV
                     RDITAEAGVNLASVNYHFGSKDALLFEIFRRRTGELNRERARMLHEANDRHGGKPPVR
                     DILEALFAPPLRWADPANDRRISVQFIIRARSEGTAEMRDALQNDVSHLARFAEALKT
                     ARPDLPPESVYWRLHFVLGMVHNNRFMEFDRLHHLSGGLTREDDVAALLKRMLDFAEA
                     GFLAD"
     gene            complement(1340..2515)
                     /locus_tag="VHN39_02575"
     CDS             complement(1340..2515)
                     /locus_tag="VHN39_02575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008903374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEX2815249.1"
                     /translation="MFMRFFTELRQAKVPVTLKEYLMLMEGLDKMVIDRSVDDFYYLS
                     RAALVKDEKNIDKFDQVFAHVFKGLERMGDDVTADIPAEWLKKLSDQFLTDEEKAQIE
                     AMGGFDALMEALAKRIAEQKERHEKGDKAIGTGGTSPFGANGYHPEGIRIGQDKGRHG
                     KAIKVWDKREYKNLDDQVELGTRNIKVALRRLRKWVRDGHADELDMGGTIKGTAEKGY
                     LDIQMRPERRNKISVLIFFDIGGSMDSHIKVCEELFSAARTEFKTMEFYYFHNCLYES
                     VWKDNRRRHAEKLNTWDILHKFPHDYKVIFVGDATMSPYEITYPGGSVEHWNEEAGAI
                     WMDRVANIYDHIIWLNPTAERHWDYTPSVGVMKQLVNDRMYPLTLAGLEKAMKELAR"
     gene            complement(2658..3278)
                     /locus_tag="VHN39_02580"
     CDS             complement(2658..3278)
                     /locus_tag="VHN39_02580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2815250.1"
                     /translation="MQLTKTRLDRDQRRELILDVAQAVFLEEGFANASMSTIAARLGG
                     SKGTLYNYFKSKDELFNAYVERRCLWQDEIFAAPLDNETPDETLRRIGRAYLTRVLTD
                     FNLRNFRLIASEAERSPEIGQTFYDAGPRKGAERVGELLQDMAEAGHLDLDDPFEAAH
                     QFLGLVQNRYFKARLCNAIPELTQKQIEDEAALAANTFLRAFGTRR"
     gene            3390..>4013
                     /locus_tag="VHN39_02585"
     CDS             3390..>4013
                     /locus_tag="VHN39_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007663211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2815251.1"
                     /translation="MRTVRPHLTVLSLLSATALSACATLPPAIPARVAKASASYATAQ
                     SLAAPGRDWPADAWWAAYGDAQLDSLMQEALAGSPDLAAAQARVRKAEAVASAAHAQE
                     LPAVSGNAGIEEMKQSYNLGIPAQFVPQGYNDYGRGTLDFSWELDFWGKNRAAVAAAV
                     SDARAAQADAAEARLMLSTNVAAAYADLARLYAERDVADRAMTVQGET"
BASE COUNT          610 a         1308 c         1358 g          737 t
ORIGIN      
        1 gacgacaagt ggctgttctc ccgctcgcgc atcgagttct ccgcccgggc ggcgggcttc
       61 gcgggcgtgc agtttgtgcc gcacaacgac catcccagcc tctatcgcga cgtggccggg
      121 gtgcattttc gcctggcgac cggccgcgac gacctcgccc tgccggagtg ggcgatgagc
      181 attctggaca gcttcgacgc ggcgatcaca ctcaacgcca agcgcgaact gatgctcgag
      241 ggcacgatcg tcctgaccaa aggatcgtaa ggctttccgc cgccacgatt gggtcacgcc
      301 gcggccatga tccatggcca cgcttggcct tgctctgggg acgaagaccg gcgatgcggg
      361 gtgcggcgat ccttgtcgtg tgggtgctct gcgccggctg tggccaggtc gcggacgcgc
      421 aggccaagct cgtcagcgac ctgcgggtca aggacgccat cggcgactac gaaaaggccg
      481 gccgaacgca caaccttctg gatgaatgcg tcaaggccaa gctggtctcc ggcgcctatg
      541 ccgatgcgcg cgacacagct gacagccagg cctggctcgc ccgctcgcaa gaggactgcc
      601 gcgccgcggc cgcgcagctc cacgccaagc cgccagcgaa gtcctagtcc gccccctagt
      661 ccgcgaggaa ccccgcctcg gcgaaatcga gcatccgctt cagcagcgcc gccacatcgt
      721 cctcccgagt aaggcccccg gagaggtggt gcaggcggtc gaattccatg aatcggttgt
      781 tgtggaccat gcccagcacg aagtgcagcc gccagtagac gctctccggc ggcaggtcgg
      841 gccgggcggt cttcagcgcc tcggcgaaac gggccaggtg gctgacgtcg ttctgcaggg
      901 cgtcacgcat ctccgcggtg ccctcggagc gcgcccggat gatgaactgg acgctgatcc
      961 gccggtcgtt ggccgggtcg gcccagcgca ggggcggggc gaacagggcc tccaggatat
     1021 cgcgcaccgg cggcttgccg ccgtggcggt cgttggcctc gtgcagcatg cgggcgcgct
     1081 cgcggttgag ctcgccggtg cgcctgcgga agatctcgaa cagcagggcg tccttggatc
     1141 cgaaatggta gttcacgctg gccaggttca ccccggcctc ggcggtgatg tctcgaaccg
     1201 agacgttctg aaagccgtgc agggcgaaga gccgctcggc ggcgccgaac accgcggcct
     1261 tggtggcggc gtgggtctct tcgtcggcgg cgatctcggt cgtgtcgtcg ggagtgagat
     1321 cagacatggg gcgtcccgcc tagcgggcga gctccttcat ggccttctcg agcccggcca
     1381 gggtcagcgg gtacatccgg tcgttgacca gctgcttcat gacgccaacc gacggcgtgt
     1441 agtcccagtg ccgctcggcc gtcgggttca gccagatgat gtggtcgtag atgttggcca
     1501 cccggtccat ccagatcgcg cccgcctctt cgttccagtg ctccaccgag ccgcccggat
     1561 aggtgatttc gtaggggctc atggtggcgt cgcccacgaa gatgactttg tagtcgtgtg
     1621 ggaacttgtg gaggatgtcc caggtgttca gcttctcggc gtgacggcgg cggttgtcct
     1681 tccagacgct ctcgtagagg caattgtgga agtagtagaa ttccatggtc ttgaactcgg
     1741 tgcgcgcggc gctgaacagc tcctcgcaga ccttgatgtg gctatccatc gagccgccga
     1801 tgtcgaagaa gatcaggacg ctgatcttgt tgcggcgctc ggggcgcatc tggatgtcga
     1861 ggtagccctt ctcggcggtg cccttgatgg tgccgcccat gtcgagctcg tcggcgtggc
     1921 cgtcgcggac ccatttgcgg aggcgccgca gcgccacctt gatgttgcgg gtgccgagct
     1981 cgacctgatc gtcgaggttc ttgtactcgc gcttgtccca gaccttgatc gccttgccgt
     2041 gccggccctt gtcctggccg atgcggatgc cctcggggtg atagccgttg gcgccgaagg
     2101 gcgaggtgcc gccggtgccg atcgccttgt cgcccttctc gtggcgctcc ttctgctcgg
     2161 cgatgcgctt ggcaagcgcc tccatcaggg cgtcgaagcc gcccatggcc tcgatctggg
     2221 ccttctcctc gtcggtgagg aactggtccg agagcttctt cagccactcg gcggggatgt
     2281 cggcggtgac gtcgtcgccc atccgctcca gccccttgaa gacgtgggcg aagacctggt
     2341 cgaacttgtc gatgttcttc tcgtctttca cgagggcggc gcggctgagg tagtagaaat
     2401 cgtcgaccga acggtcgatg accatcttgt ccagaccctc catgagcatg aggtattcct
     2461 tcagcgtcac cggcaccttg gcctggcgaa gctcagtgaa gaaacgcatg aacatgggcg
     2521 gcggccccct caagccgcct agggcggctt cctctttgtt tcttagcgtt ttcacttcgc
     2581 gaaaacaccg acgaacgtct gtttgaacgc ggaggatggg gctccgggcc gccgatgtcc
     2641 agagcggggc gggggcctta gcgtcgcgtc ccgaaggccc gcaggaaggt gttggccgcc
     2701 agcgccgcct cgtcctcgat ctgcttctgg gtcagttcag ggatagcgtt gcagagccgg
     2761 gccttgaagt agcggttctg gaccaggccc aggaactggt gcgccgcctc gaacggatcg
     2821 tcgaggtcga ggtgaccggc ctcagccatg tcctggagaa gctcgcccac ccgttcggcg
     2881 cccttgcgcg ggccggcgtc atagaaggtc tggccgatct ccggcgagcg ttcggcctcg
     2941 gacgcgatca ggcggaagtt gcgcaggttg aaatcggtga gcacgcgggt gaggtacgcc
     3001 cggccgatcc ggcgcagggt ctcgtcgggc gtttcattgt cgagcggggc ggcgaagatc
     3061 tcgtcctgcc acaggcagcg gcgctcgacg taggcgttga acagctcgtc cttgctcttg
     3121 aagtagttgt agagcgtgcc cttggagccg ccgagccggg cggcgatggt ggacatcgag
     3181 gcgttggcga agccctcttc cagaaagacg gcttgcgcca catctagaat gagttcgcgg
     3241 cgctggtcgc ggtccagtcg cgttttcgtc agttgcatcg cttttttcca accgtacggt
     3301 atggtcagtc ttgacgcgcc gtggtggcgc tcgctatatc gtcccatgca atatatgacc
     3361 gtaccgtacg gtatgacaag agtgggctca tgcgaaccgt ccgtccccat ctcaccgtcc
     3421 tgagcctgct ctccgccaca gcgctgagcg cgtgtgcgac cctgccgccc gccatccccg
     3481 cgcgggtcgc caaggcctcg gcgagctatg cgacggccca gtccctggct gcgcccggcc
     3541 gtgactggcc ggccgacgcc tggtgggcgg cctatgggga tgcgcagctc gacagcctga
     3601 tgcaggaagc cctggccggc tcgccggacc tggccgccgc ccaggctcgc gtccgcaagg
     3661 ccgaggccgt ggccagcgcc gcccatgcgc aggagctgcc ggccgtttcc ggcaacgccg
     3721 gcatcgaaga gatgaagcag agctacaacc tcggcatccc ggcgcagttc gtaccgcagg
     3781 gctacaacga ctacggccgc gggacgctcg acttcagctg ggagctcgac ttctggggca
     3841 agaaccgtgc ggccgtggcc gccgcggtct ccgacgcccg tgcggcgcaa gccgacgccg
     3901 ccgaggcccg actgatgctc tccaccaatg tagcggccgc ctacgccgac ctcgcccgcc
     3961 tctatgccga gcgcgacgtg gccgaccggg ccatgaccgt gcagggcgag acc
//
LOCUS       DATAJL010000139         4276 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_15182,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000139 DATAJL010000000
VERSION     DATAJL010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4276)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4276)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4276
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15182"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1572
                     /locus_tag="VHN39_02590"
     CDS             <1..1572
                     /locus_tag="VHN39_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEX2815252.1"
                     /translation="ADTGSQRPGPPRGGPPGGFPGRKGPDLTVGPIGATLITFALPVL
                     GSNILQALNGTANAIWVSHVLGEAALTATSNANQIFFMMLGAAFGVTMAANIMIGQAI
                     GARDDAVAKKVVGTATTFFILLSLLIGIAGGILTPHILDAMKTPAAARADAIAYLRVI
                     FAAMPFMYFFSFVMMAQRGTGDSKTPFYFSLLAVGLDVILNPMLIMGVGPFPKMGIAG
                     SATSTLIAQTFTLAVMLTHLYRQRSILVIRPSEWRLLIPDFKIITTLVTKGTPMAFQM
                     MVISFAAVTMMSFVNRYGVHTSAAYGAAAQLWTYVQMPAMALGAAVSSMAAQNVGAGR
                     MDRVERVARVGALYAVLFTGVPILIIYLADPWVLQAFLKGASKSLPIAVHINSIVLWG
                     FVPFGVAFIFSGIVRSTGAVWPPLLAMIISLWGVRVPMARLLEPHWGADAIWYAFPAG
                     SSMTCLLAGGYFLWGGWRKSRMLDMTPSADAPDTGLGQPMMDESEAITDEESFEIRRG
                     APSGRNRPKSEAPAE"
     gene            complement(1514..2737)
                     /locus_tag="VHN39_02595"
     CDS             complement(1514..2737)
                     /locus_tag="VHN39_02595"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004620887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2815253.1"
                     /translation="MSKAKSAGFSKDRLGRIETLLRQKYVGPGRMPGAQFLLARDGET
                     IHETVLGNRDVERGAKLTDDTVFRIYSMTKPVACVALMTFVEEGLIALDDPVAKHIPA
                     WKDLGVYSAGLGPYLTKPPARPMQVVDLMRHTSGLTYGFQSRTNIDAAYRKLKLSEAH
                     GDTDLEGMIAQLAELPLEFSPGEAWNYSVSTDVVGYLVQKIAGKPLSQVLQERIFDPL
                     KMTDTGFFVREDQQARFAACYNATPRGGLKLQDDPQASPYLKPPALESGGGGLVSTAT
                     DYMRFANMLVNGGELDGARILSPMTIRLMASNHLPGGRDLTEMSRSLFSEATNEGVGF
                     GLGFAVVFDPPKTLIPCSIGEFYWGGAASTAFWVDPVEKVTAVFMTQLLPSSTYPIRR
                     ELRTLVYSALMEPRV"
     gene            2821..3588
                     /locus_tag="VHN39_02600"
     CDS             2821..3588
                     /locus_tag="VHN39_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crotonase/enoyl-CoA hydratase family protein"
                     /protein_id="HEX2815254.1"
                     /translation="MQTVSTEVRGRAVIVTIERPQARNAVDGPTAQQLYDAFKAFDAD
                     DALDVAILQGRGGAFCAGADLKGVAEGRGNPVLREGDLGPMGCTRLRLGKPVIAAIEG
                     HAVAGGLEVACWADLRVAAEGSVFGVFCRRFGVPLIDLGTIRLPRLIGASRAMDLILT
                     GRPVIAQEAYDIGLANRLAPKGGALDAALELAAQLSAFPQLCMRNDRLSALGQWSLDW
                     DQATAAEVALGMEVLRSGASQEGAARFAAGEGRGGKF"
     gene            complement(3585..>4276)
                     /locus_tag="VHN39_02605"
     CDS             complement(3585..>4276)
                     /locus_tag="VHN39_02605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HEX2815255.1"
                     /translation="PRRDFGAEVVAQIQAKVKADPAAVRAAALAASPPIEPPPKRPAN
                     LVDLTTIDPRIKLDIRYATANNFMGFPLYERSAAYLQRPAAEALGRAQKALGSQGYGL
                     LIHDGYRPWFVTKMFWDATPPEDHVFVADPAQGSRHNRGCAVDLTLYELKTGKPVEMT
                     GRYDEMSTRSYADFVGGTTRQRALRQILRGAMEAEGFAVYPQEWWHFDYQDWPSYGIG
                     TVTFTELAARR"
BASE COUNT          632 a         1468 c         1455 g          721 t
ORIGIN      
        1 gccgacaccg gatcgcagag accgggcccg ccaagagggg ggcctcccgg cgggttcccc
       61 ggccgcaagg gccccgacct caccgtcggg ccgatcgggg cgaccctgat caccttcgcc
      121 ctgccggtgt tgggctccaa catcctgcag gcgctgaacg gcacggcgaa cgccatctgg
      181 gtcagccacg tgctgggcga ggcggccctg accgcgacct ccaacgccaa ccagatcttc
      241 ttcatgatgc tgggcgccgc cttcggggtg accatggccg ccaacatcat gatcggccag
      301 gcgatcggcg cccgcgacga cgcggtggcc aagaaggtgg tcggcaccgc caccaccttc
      361 ttcatcctgc tgtcgctttt gatcggcatc gccggcggca tactgacgcc gcacatcctg
      421 gacgccatga agaccccggc cgcggcccgc gccgacgcta tcgcttattt gcgggtgatc
      481 ttcgcggcca tgccgttcat gtatttcttc tccttcgtga tgatggccca gcgcggaacg
      541 ggcgatagca agaccccgtt ctatttctcg ctgctggcgg tcggcctcga cgttatcctc
      601 aacccgatgc tgatcatggg cgtcggaccg ttcccgaaga tgggcatcgc ggggtcggcg
      661 acctccaccc tgatcgccca gacctttacc ctcgcggtca tgctgaccca cctctatcgg
      721 cagcgctcga tcctggtgat ccggcctagc gaatggcgcc tgctcatccc cgacttcaag
      781 atcatcacca ccctggtgac caagggcacg cccatggcct tccagatgat ggtcatcagc
      841 ttcgcggcgg tgaccatgat gagcttcgtc aaccgttacg gggtgcacac ctcggcggcc
      901 tatggcgcgg cggcgcagct gtggacctat gtccagatgc cggccatggc gctgggcgcg
      961 gcggtctcct ccatggcggc ccagaacgtg ggcgcgggcc ggatggaccg ggtcgagcgg
     1021 gtggcgcggg tcggcgcgct ctatgcggtc ctcttcaccg gcgtgccgat cctgatcatc
     1081 tacctggccg acccctgggt gctgcaagcc ttcctgaagg gcgcgagcaa gtcactgccg
     1141 atcgccgtgc acatcaactc catcgtgctc tggggcttcg tgcctttcgg cgtcgccttc
     1201 atcttctcgg gaatcgttcg ctcgaccggc gcggtctggc cgccgctgct ggccatgatc
     1261 atctcgctgt ggggcgtgcg cgtgcccatg gcgcgcctgc tggagcctca ctggggcgcg
     1321 gacgccatct ggtatgcatt tccggccggc agctcgatga cctgcctcct ggccggcggc
     1381 tacttcctgt ggggcggctg gcgcaagtcg cggatgctcg acatgacccc cagcgccgac
     1441 gcgccggaca ccggcctcgg ccagccgatg atggacgaga gcgaggcgat caccgacgag
     1501 gagagcttcg aaatcagacg cggggctcca tcagggcgga atagaccaaa gtccgaagct
     1561 cccgccgaat aggataggtc gaggacggca ggagctgggt catgaacacc gccgtcacct
     1621 tctccaccgg atcgacccag aaggccgtcg aggccgcgcc gccccagtag aactcgccta
     1681 tcgagcacgg gatcagggtc ttcggcgggt cgaacaccac ggcgaacccc aggccgaagc
     1741 cgacgccctc gttggtggcc tccgagaaca gcgagcgcga catctccgtc agatctctgc
     1801 cgcccggcag gtggttggag gccatcagcc ggatggtcat ggggctgaga atccgcgccc
     1861 cgtccagctc gccgccgttc acgagcatat tggcgaaacg catgtagtcg gtggccgtcg
     1921 agaccaaccc gccgccgccg gattccaggg ccggcggctt caggtagggg cttgcctgcg
     1981 gatcgtcctg cagcttcagc ccgccccgcg gggtggcgtt gtagcacgcg gcgaagcggg
     2041 cctgctggtc ctcgcggacg aagaagccgg tgtcggtcat cttcagggga tcgaagatgc
     2101 gttcctgcag gacctgggaa agcggctttc cggcgatctt ctgcaccagg tagccgacca
     2161 cgtcggtgga gaccgaatag ttccaggcct cgcccggcga gaactccagc ggcagctccg
     2221 cgagctgcgc gatcatgccc tccaggtcgg tgtcgccatg cgcctcggag agcttcagct
     2281 tgcggtaggc ggcgtcgata ttggtgcggc tctggaagcc ataggtcagg cccgaggtgt
     2341 gtcgcatcag gtcgaccacc tgcatcggtc gcgccggcgg cttggtcaga taggggccga
     2401 gccccgccga atagacgccc aggtccttcc aggccgggat gtgcttggcc accggatcgt
     2461 cgagcgcgat caggccctcc tcgacgaagg tcatcaaggc cacgcaggcc accggcttgg
     2521 tcatcgaata gatgcgaaaa accgtgtcgt cggtgagctt ggcgccgcgt tcgacgtcgc
     2581 ggttcccgag cacggtttcg tggatcgtct cgccgtcgcg ggccagcagg aactgggcgc
     2641 cgggcatgcg gccggggccc acgtacttct gccgcagcag ggtctcgatg cgtcccaggc
     2701 ggtccttcga aaaccccgcc gacttggcct tgctcatcgt cgtcctccgc tgccgccgat
     2761 ccttttgccc ttgccttccg cgcggtcgca agcgccgtct tggccgatca ggagaccgcc
     2821 atgcagaccg tcagcactga agttcgtggc cgggccgtca tcgtcaccat cgagcggccc
     2881 caggcgcgca acgccgtcga tggccccacc gcccagcagc tctacgacgc cttcaaggcc
     2941 ttcgacgccg acgacgcgct ggacgtggcg atcctgcagg gccgcggcgg ggccttctgc
     3001 gccggcgccg acctgaaggg cgtcgccgag gggcgcggca atccggtgct gcgcgagggc
     3061 gacctcggcc ccatgggctg cacgcgcctg cgcctgggca agccggtgat cgcggccatc
     3121 gagggtcatg ccgtggccgg tgggctggag gtggcctgct gggccgacct gcgcgtggcg
     3181 gccgagggct ccgtcttcgg cgtcttctgc cgccgcttcg gcgtgccgct gatcgacctc
     3241 ggcaccattc gcctgccgcg tctgatcggg gcctcgcggg ccatggatct gatcctcacc
     3301 ggccggccgg tcatcgccca ggaggcctac gacatcggcc tcgccaaccg cctggcgccc
     3361 aagggcggcg ctctggacgc cgcgctggag ctggccgccc agctctcagc ttttccccag
     3421 ctctgcatga ggaacgaccg cctctcggcc ctcggccaat ggtcgctgga ctgggatcag
     3481 gccacggccg cggaggtcgc gctcggcatg gaggtcctgc gctccggcgc gtcgcaggaa
     3541 ggcgccgccc gcttcgccgc cggcgagggg cgcggcggca agttctagcg gcgggccgcg
     3601 agctcggtga aggtcaccgt gccgatgccg taggacggcc agtcctggta gtcgaagtgc
     3661 caccattcct gcggatagac cgcgaagccc tcggcctcca tggccccgcg caggatctgg
     3721 cgaagcgccc gctgccgggt cgtgccgccc acgaagtcgg cgtaggagcg tgtcgacatc
     3781 tcgtcgtatc ggccggtcat ctcgacgggc ttgccggtct tcagctcata gagggtgagg
     3841 tccacagcgc agccgcggtt atggcgcgac ccctgggcgg gatcggcgac aaagacgtgg
     3901 tcctccggcg gtgtcgcgtc ccagaacatc ttggtcacga accagggccg gtagccgtcg
     3961 tggatcagca ggccgtagcc ttggctccca agcgccttct gcgcccgacc cagcgcctcg
     4021 gcggcgggcc gctgcagata ggccgcagat cgttcgtaga gcgggaagcc catgaagttg
     4081 ttggcggtgg cgtagcggat gtcgagcttg atccgtgggt caatggtagt gaggtcgacc
     4141 agattcgccg gccgtttggg cggaggctcg atgggcggcg aggcggcgag ggcggcggcg
     4201 cggaccgcgg ccggatcggc cttcaccttg gcctggatct gcgcgacgac ctccgcgccg
     4261 aagtcgcggc ggggca
//
LOCUS       DATAJL010000140         2425 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28035,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000140 DATAJL010000000
VERSION     DATAJL010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2425)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2425)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2425
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28035"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..1042
                     /locus_tag="VHN39_02610"
     CDS             23..1042
                     /locus_tag="VHN39_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-deoxycytidine 5'-triphosphate deaminase"
                     /protein_id="HEX2815256.1"
                     /translation="MSDVSRPGILPCQAIEALIANGAITADTAFETDQVQPASLDLRL
                     GGRAWRVRASFLPGRHTVRERIATVAMHEVDLTRSAVLERGCVYIAELQERLKLPRGV
                     SARANPKSSTGRVDVFVRLLTDRGNRFDDVDDGYDGPIYMEIAPQTFSVLVRTGTRLN
                     QLRLKAGQPERLRTESVGVDLTGEIAGFRGRRHAGLVDLDKEDGHDPRDFWEPLRPKD
                     GQLLLDPGEFYILASKGAVEIPVMEAAEMTPIDPSVGEFRVHYAGFFDPGFGTDEAHG
                     KGSKGVLEVRSHETPFILEDGQTVARLVYEPLTEKPERLYGDLGSHYQRQGLKLSKHF
                     RIWGE"
     gene            1140..1568
                     /locus_tag="VHN39_02615"
     CDS             1140..1568
                     /locus_tag="VHN39_02615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815257.1"
                     /translation="MLDRRSIQTYAFAAAGLIGAIPIMFLPRMMFSNPAAADGAYWAA
                     TVACVAAAMAWALWFAIAAFRRAEEFAKERSKFAWYWGGLPGVAVAALLYTLIAGGGV
                     PGLLDHVAPLRAFGLGMASLLVVQFFGAIVMSVWWQVTKR"
     gene            1595..2020
                     /locus_tag="VHN39_02620"
     CDS             1595..2020
                     /locus_tag="VHN39_02620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815258.1"
                     /translation="MTQATHPRSIMTKPSWRRYMLRFGAAMAAYVAVLVPVDYLAQRG
                     MMPAKPWLYLVAVAPAIPVALVVFIVLRYLQEEEDEYQRMLNIRAYVAATGLTLTICT
                     GWGFLQDFAGLPQISLTHVFMLFCVCQGLTTGWTRWRHG"
     gene            2020..2214
                     /locus_tag="VHN39_02625"
     CDS             2020..2214
                     /locus_tag="VHN39_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2815259.1"
                     /translation="MKNRLKVLRAERDWSQADLALRLDVSRQSVNAIETGKYDPSLPL
                     AFRIARLFDAPIEAIFDGEA"
BASE COUNT          363 a          886 c          776 g          400 t
ORIGIN      
        1 ctccgctaac tcttcgccgc ccatgagcga cgtttcccgc ccgggcatcc tgccctgcca
       61 agccatcgaa gccttgatcg ccaatggcgc gatcacggcc gacaccgcct ttgaaaccga
      121 ccaggtccag ccggccagcc tcgacctgcg cctgggcggc cgcgcctggc gggtgcgggc
      181 ttccttcctg ccgggccgcc acacggtgcg cgagcggatc gccaccgtgg ccatgcacga
      241 ggtcgacctc acccgcagcg ccgtgctgga gcgcggttgc gtctacatcg ccgagctgca
      301 ggagcggctg aagctgccac gtggcgtctc ggcccgggcc aatcccaaga gctccaccgg
      361 ccgcgtcgac gtcttcgtcc gcctgctgac ggaccgcggc aatcgcttcg atgacgtgga
      421 cgacggctat gacgggccga tctacatgga gatcgcgccc cagaccttct cggtcctggt
      481 ccgcaccggc acgcggctga accagctccg cctcaaggcc ggccagcccg agcggctgcg
      541 caccgagagc gtcggcgtcg acctgaccgg cgagatcgcc ggcttccgcg gccgccggca
      601 cgccggcctc gtcgacctcg acaaggaaga cggccacgat ccgcgcgact tctgggagcc
      661 gctgcgcccc aaggacggcc aactgctgct cgaccccggc gagttttaca tcctggcgtc
      721 gaagggcgcg gtggagatcc cggtgatgga ggccgccgag atgaccccca tcgacccctc
      781 ggtcggcgag ttccgggtcc attacgccgg cttcttcgac ccgggcttcg gcaccgacga
      841 ggcgcacggc aagggctcca agggggtgct ggaggtccgc agccacgaga cgccgttcat
      901 cctggaggac ggccagacgg tggcgcgcct ggtctatgag cccctgaccg agaagcccga
      961 gcgcctctac ggcgacctcg gctcgcacta ccagcgccag ggcctgaagc tctccaagca
     1021 cttccggatc tggggcgagt agctccgacg ccagacaatg acacgcgacg ttttgtcatg
     1081 gacgcttgac atgccgtgat gtgtcgtgct tccttgtcat caagacaagg agacttccca
     1141 tgctcgatcg ccggtccatc cagacctacg ccttcgccgc tgccgggctg atcggggcca
     1201 tccccatcat gttcctgccg cggatgatgt tctcgaaccc cgccgccgcc gacggcgcct
     1261 actgggccgc gaccgtggcc tgcgtggcgg ccgccatggc ctgggcgctg tggttcgcaa
     1321 tcgccgcctt ccgccgcgcc gaggagttcg ccaaggaacg ctccaagttc gcctggtact
     1381 ggggcggcct gccgggagtc gcggtcgcgg ccctgctcta caccctcatc gcgggcggtg
     1441 gcgtcccggg cctgttggac catgtggctc ccctccgcgc cttcggcctc ggcatggcga
     1501 gcctgctcgt cgttcagttc ttcggcgcga tcgtcatgtc cgtctggtgg caagtgacca
     1561 agcgctgaac cctcgttttc caaggacaat ccagatgacc caagcgaccc atccccgctc
     1621 gatcatgacc aagccgtcct ggcgccgcta catgctgcgc ttcggggccg ccatggccgc
     1681 ctatgtcgcc gtgctcgtgc cggtggacta cctcgcccag cgcggcatga tgccggccaa
     1741 gccctggctc tacctcgtgg ccgtggcgcc cgcgatcccg gtggccttgg tcgtgttcat
     1801 cgtccttcgc tacctgcagg aggaggagga cgagtaccag cggatgctca acatccgcgc
     1861 ctacgtcgcc gccaccggcc tgaccctgac catctgcacc ggctggggct tcctgcagga
     1921 cttcgccggc ctgccgcaga tctcgctcac ccacgtcttc atgctgttct gcgtctgcca
     1981 ggggctgacc accggctgga cccgctggag gcacggttga tgaagaaccg gctgaaggtg
     2041 ctgcgcgccg agcgagactg gagccaggcc gacctcgcgc tgcgcctcga cgtctcgcgc
     2101 cagagcgtca acgccatcga gaccggcaag tacgatccct cgctgccgct ggccttccgg
     2161 atcgccaggc tgttcgacgc gccgatcgag gcgatcttcg acggggaggc ctgagacagc
     2221 aaaacgcctc gcgtgggctc cacgcgaggc gctctgtgtt cgaacgtcga tgctgtctag
     2281 gcgaaggcct tggactgacg gcggcgcatc atcgcgccaa ccccgccgaa gcccgcgatc
     2341 agcatcgccc aggccgccgg ctcggggacg ccacctgtgg cgactatggg caagcttgcg
     2401 gtccagaagc cggccgtcgg gaagc
//
LOCUS       DATAJL010000141         5610 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104201,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000141 DATAJL010000000
VERSION     DATAJL010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5610
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104201"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(534..1538)
                     /locus_tag="VHN39_02630"
     CDS             complement(534..1538)
                     /locus_tag="VHN39_02630"
                     /inference="COORDINATES: protein motif:HMM:TIGR01840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHB depolymerase family esterase"
                     /protein_id="HEX2815260.1"
                     /translation="MLTYRPRRGGKGMPLVVVLHGCAQGAETFARQAGWLALADRYGF
                     VVVAAEQSGANNPNRCFNWFEPKDTRRGEGESASIAAMVAHAVRTEGVDPMQVYVTGL
                     SAGGAMTAVMLVAYPEVFAGGAVVAGLPYGVAQGMMGAMQAMQGGGSQTPTELGDLVR
                     NAEPACLPARIAIWHGDSDYTVRPQNASDVARQWADLHGLSGETGMSETLSDRTRTVW
                     RAGDSSETLIELNLVHGLGHGAPLSAAGEDGVGSAGPYMLEAGISSSLEIARFWGLAE
                     GAAPSVTAAPGSAAKAANTKQPMLVAVGDQVMSSLTERVAPAVQHVIEMALKRAGLRH
                     "
     gene            1965..5228
                     /locus_tag="VHN39_02635"
     CDS             1965..5228
                     /locus_tag="VHN39_02635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEX2815261.1"
                     /translation="MAALNHVTRYRYGEPVELGPHVVRLRPAPHTRTRIASYSMKVTP
                     AEHFINWQQDPHGNWLARIVFPEPTREFSITVDLTAEMVVINPFDFFVEPYAETLPFS
                     YPEALAHDLAPYIAFDDPGPGLDAAVAALEPNGQGTVNFVVGLNAKVRNLVDYVVRME
                     PGVQTPDATLQLGSGSCRDSAWLLVQMLRRLGLAARFVSGYLLQLKADIDPIEGPLGT
                     RTDFTDLHAWAEVYIPGAGWIGLDATSGLLCGEGHIPLAASPHYRSAAAISGGSSRPA
                     DDFDFSMTVTRLVEPIRITRPFEEVDWAALDAVGEAVEVDLQSQDVRLTMGGEPTFVS
                     VDDFEAAEWNIDASGPTKPILSEQLLRRLKDRFGPGGMLHFGQGKWYPGEALPRWALG
                     LHWRRDGRPVWRDEPSDLADERRPSANIADAHGLILRLSDQLGVDPTLILPAREDPLP
                     AMKAENDLPPDVELTDEALDDSAERTRLRRLMQGGLSKTLGYVLPLRRAVTKAEGRGW
                     LSEEWRFKRGRLYAIPGDSPLGLRLPLDSLPELKPEDYPHIVPLDPYEDRGPLPDYSR
                     LSAAEPGSSGDRRRKPVAVRTALSVEPRGGYLYVFMPPVARLEDYLELVAQLQAAAEE
                     LPIRLEGYPPPPDPRLGVLKVTPDPGVIEVNVQPAATWREAVDITTGVYADARACRLG
                     ADKFMTDGRHTGTGGGAHVVIGGSSPADSPFLRRPDVLKSLLLYWQRHPALSYLFSGL
                     FVGPTSQAPRIDEARHDALYELDIALGLIPPPSRKKPPPPWLVDRLLRNLLTDVAGNT
                     HRTEICVDKLYSPDGPTGRLGLLEFRGFEMPPDARMSLAQQLIIRALVAWFWREPQQG
                     RMVRWGTALHDRFMLPHFVWRDFLDVIGDLSRAGYDFDPHWYEAQRAFRFPVHGRVEY
                     GGVSLELRHALEPWHVMGEETSGSGTVRFVDSSVERLQVLAEGFNPERHVIACNGRAL
                     PMSPTGVSMEAVAGVRYKAWKLRSGLHPTLPVNAPLTFDIIDRANARSIGGCVYHVTH
                     PGGRSYDTFPVNSYEAQARRKARFEEQGHSPGPIKVPHPEPTDEFPMTLDLRTPGGR"
     gene            5218..>5610
                     /locus_tag="VHN39_02640"
     CDS             5218..>5610
                     /locus_tag="VHN39_02640"
                     /inference="COORDINATES: protein motif:HMM:NF025761.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX2815262.1"
                     /translation="MAAETATKRRGEDLEPSAAKRLSAWLRGYAPIQGIPDELFDATG
                     RPRGDWLSFLGDFAEYPEGEFKSRFEVATRHIRDTGVSYRVYGEETEQSWPLNPLPLI
                     LPQSEWREIARGVEQRANLMEALLQDIYG"
BASE COUNT          896 a         1982 c         1791 g          941 t
ORIGIN      
        1 ggtgtcggtc atggcgcgtc ctcccatggt cttgcctgac cgatgatacg cgtgcgcgtc
       61 gaaaaaagcg gcgccgcgac gcgtttttct tggggctcag ccgtgattgt gcgtccgaga
      121 gccacggccg gtggagcatg accgagatac ccggtccctg tcgtaccgac gagggagcat
      181 gctgagatgc tgctgagccg gatcgagaac attcagacga actatatccc gctggcctga
      241 gggcggagac ctgtcgacct tggactgcct gcaccgccac gcagacctcg caaaaggtct
      301 ctcgccgcct gcgcggccgc agggcgcgga cttcgcccat gaatttctga ccacttccgt
      361 cacgaccccc ttcattcggg cgaccctttg ggccgcaaag ggcccgaaaa agggccagtg
      421 tctccggcgc caaattccgc gacggtttcc accggatcac cggcgcgggc gcctgggccc
      481 ggcgtggcgg gttcttgagg cgcagagtcg ggcagcgcgc ggcatcggac atgctagtgt
      541 ctgaggcccg cccgtttcag cgccatctcg atgacatgct gcaccgctgg agcaacacgc
      601 tctgttagac tggacatcac ctggtcgccg accgcgacca acattggctg tttggtgttc
      661 gccgcctttg cggcggaccc aggcgccgcc gtcacggacg gtgcggcgcc ctcggccagg
      721 ccccagaagc gagcaatctc caaggaagag gagatcccgg cctccagcat gtaggggccc
      781 gccgatccca cgccgtcctc gcccgcggcc gaaagcggcg ctccgtgccc gaggccgtgg
      841 accaggttca attcgatcaa cgtctcgctg gagtctcccg cgcgccagac ggttcgggtt
      901 ctgtctgaca gcgtctcgct catcccggtc tcaccggaca gcccgtgcag gtcggcccat
      961 tgtctcgcga cgtcagacgc gttttgcggc cgcacagtat aatcggagtc cccatgccag
     1021 atcgcgatcc gcgccggcag acaggctggt tcggcgtttc gcaccaggtc tcccaactcg
     1081 gtcggggtct gactgccgcc accctgcatg gcctgcatcg cgcccatcat gccctgcgca
     1141 acaccgtagg gcagccccgc cacaaccgcg ccgcctgcga agacctcggg atatgcgacc
     1201 aacatgaccg cagtcatggc gccgccggcc gaaagcccgg tcacgtacac ctgcattggg
     1261 tccacgccct cggtccgaac cgcatgggcg accatggctg cgatcgaggc ggactcaccc
     1321 tcgccacgac gggtgtcttt aggctcgaac cagttgaagc accggttggg gttgttggct
     1381 ccggactgct ctgcggcgac gaccacgaac ccgtaacgat cggcaagcgc cagccacccg
     1441 gcctggcgcg cgaacgtctc ggcgccttgt gcgcatccgt gcagaaccac cacgagaggc
     1501 atgcctttgc caccccgccg gggccgatag gtcagcatct tcagcgcccc ggggttcggc
     1561 ccgaagcgaa gtgtgggggt cattttcggc gcagccccgt ctggcgtctc cgccacaccg
     1621 cgccgaaggc gcctcaggcg cgcggtcgtc tcagcaaggc cggccatggg cgcgttttcc
     1681 gtccgcggtg aatgtgcgat gcaacatata atggtgcaat gcacaattgg tcgcatccga
     1741 aggtcgattt ctttgattga tcgcgaagtc ggcaagaccg ccgggccggt ctcccttcca
     1801 cgccacggac gcgcgggtcc ggttcctcac ggcggacact caactgtctg cgcttgaggc
     1861 aaatgcgtcg tcgcgcgccc ccgaccgctt ttccggtccg ccagcggttt cgaagggcgt
     1921 agggtcaagg gatagctcca gacacagagt gtcccctgtc ggtcatcgcc gccctcaatc
     1981 acgtcacccg gtaccgctac ggcgagccgg tggagcttgg cccgcacgtc gtgcgactgc
     2041 ggcccgctcc gcacacccgg acgcgtatcg ccagctactc gatgaaggtc accccggccg
     2101 aacatttcat caactggcag caggacccgc acggcaactg gttggcgcgc atcgtcttcc
     2161 ctgagccgac gcgggagttc agcatcaccg tcgatctcac cgccgagatg gtggtgatca
     2221 atcccttcga cttcttcgta gaaccctacg ccgagacact ccccttcagc tatccggagg
     2281 ccctggcgca cgaccttgcg ccctatatcg cctttgacga tcccggcccc ggcctcgacg
     2341 cggcggtcgc ggccctggag cccaacggcc aggggaccgt caacttcgtc gtcggcctca
     2401 acgccaaggt ccgcaatcta gtggactacg tcgtgcgcat ggagcctggg gtgcagaccc
     2461 cggacgccac cctgcaactg ggctccggat cttgcaggga cagcgcctgg ctccttgtcc
     2521 agatgctgcg acggttgggc ctcgccgcgc gcttcgtgtc tggctacctg cttcaactga
     2581 aggcggacat cgatcctatc gaaggcccac tggggacgcg gaccgacttc actgacctgc
     2641 acgcctgggc ggaagtctat attccgggcg ccgggtggat tgggctcgac gccacatcgg
     2701 gcctgctgtg cggcgagggc cacatcccgc tcgcagcctc ccctcactac cggtccgccg
     2761 cggcgattag cgggggctcc agccgccccg ccgacgactt cgacttctca atgacggtta
     2821 cgcgcctggt cgagccgatc cgcatcaccc ggccctttga ggaggtcgac tgggccgccc
     2881 tggacgccgt cggcgaggcc gtggaggtgg atcttcaaag ccaggacgtt cgcctgacca
     2941 tgggtggcga gccgaccttc gtttccgtcg acgacttcga ggccgccgag tggaatatcg
     3001 acgcctcggg tcccacaaaa ccgatcctta gcgaacagct gctgcgccgc ctcaaggacc
     3061 gcttcgggcc gggcggcatg ctgcatttcg gccagggcaa gtggtatccg ggcgaggccc
     3121 tgccgcgctg ggcgcttggc ctccactggc gccgcgacgg ccgtcccgtc tggcgcgacg
     3181 agccgtccga cttggcggac gagcgtaggc cctccgcgaa catcgccgac gcccatgggc
     3241 tgatcctacg gctgtccgac caattgggcg tcgatccgac gctcatcctg ccggcgcggg
     3301 aggatccatt gccggcgatg aaggccgaga acgacctgcc gcccgacgtc gaactgaccg
     3361 acgaggcgct cgacgattcc gctgagcgca ctcggctgcg gcgcctgatg cagggcgggc
     3421 tctcgaagac cctgggctat gtgctgcccc tgaggcgggc agtcacgaaa gccgagggcc
     3481 gcgggtggct cagcgaagag tggcgattca agcgcggccg gctctacgcc atcccaggcg
     3541 actcaccgct tgggctacgc ctgccgctcg actccctgcc cgagctgaag cccgaggact
     3601 atccgcacat cgtgccgctc gacccctacg aggatcgcgg tcccctgcca gactattcgc
     3661 ggctttccgc ggccgagccg ggctcctctg gcgatcgccg gcgcaagccc gtcgcggtgc
     3721 gcacggcgct cagcgtcgag ccgcgagggg gttacctcta tgtcttcatg ccgccggtgg
     3781 cccggctgga ggactatctt gaactggtcg cccagctgca agcggccgcc gaggagctgc
     3841 cgatcaggct ggagggctac cctccaccgc cggatccgcg cctgggcgtc ctcaaggtca
     3901 cgcccgaccc cggcgtgatc gaggtcaatg tgcagccggc cgccacatgg cgcgaggcgg
     3961 tcgatatcac gaccggcgtc tatgccgacg cccgcgcttg ccgcctgggc gccgacaagt
     4021 tcatgaccga cgggcgccat accggcaccg gcggcggcgc gcacgtggtg atcggcggat
     4081 cgagccccgc ggactccccg ttcctgcgcc ggcccgatgt gctgaagagc ctgctgctct
     4141 actggcagcg ccatccggcg ctttcctacc ttttttcagg cctcttcgtc ggccccacaa
     4201 gccaggcccc gcgcatcgac gaggcgcgac acgatgcgct ctacgagctc gacatcgcgc
     4261 ttgggctgat cccgccgccc agccgcaaga agccgccccc accgtggctc gtcgaccgcc
     4321 tgttgcgcaa cctgctgaca gacgtcgccg gcaacaccca ccgcaccgag atctgcgtcg
     4381 acaagctcta ttcgcccgat ggcccgaccg gccggctggg cctgctggaa tttcgcggct
     4441 tcgagatgcc cccggacgcg cggatgagcc tcgctcagca actgatcatc cgggccctgg
     4501 tcgcctggtt ctggcgcgag ccgcaacagg gccgaatggt acgctggggc acggccctgc
     4561 acgatcgctt catgctgccg cacttcgtct ggcgcgactt cttggacgtg atcggcgatc
     4621 tgagccgcgc cggctatgac ttcgacccgc actggtacga ggcccagcgc gcgttccgct
     4681 tcccagtcca cggccgcgtc gaatacggcg gggtttccct ggagctgcgc cacgccctgg
     4741 aaccctggca cgtaatgggc gaggaaacct ccgggtcagg tacggtccgc ttcgtcgatt
     4801 cctcggtgga gcgcctgcag gtgctggccg agggtttcaa tcccgagcgc catgtgatcg
     4861 cctgcaacgg cagggcgctg ccgatgagcc cgaccggggt ttcgatggag gcggtggcgg
     4921 gcgttcgcta caaggcctgg aagctgcgca gcggcctgca tccgaccctg ccggtcaacg
     4981 cgccgctcac cttcgacatc atcgaccggg cgaacgcgcg ttcgatcggc ggctgcgtct
     5041 accacgtgac ccatccgggc ggccggagct atgatacctt cccggtcaac tcctatgagg
     5101 cgcaggcgcg gcgcaaggcg cgcttcgagg agcagggcca cagccccggg ccgatcaagg
     5161 tcccgcaccc tgagccaacg gacgagtttc cgatgaccct ggacctgaga acgcctggtg
     5221 gccgctgaga ccgccacgaa gcgacggggt gaagacctcg agccctccgc tgccaagcgg
     5281 ctttccgcat ggctgcgtgg ctacgcgccc atccagggca ttcccgacga attgttcgac
     5341 gccacagggc ggccgcgcgg cgactggctg agcttcctgg gcgacttcgc ggaatatcct
     5401 gagggcgaat tcaagagccg cttcgaggtg gccacccggc atatccgcga caccggggtc
     5461 tcctaccggg tctatggtga ggagaccgaa cagagctggc cgctcaaccc ccttccgctg
     5521 atcttgcctc agagcgagtg gcgggagatc gcccgaggtg tcgagcagcg cgccaacctc
     5581 atggaagcct tgctgcagga catctacggc
//
LOCUS       DATAJL010000142         2375 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41152,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000142 DATAJL010000000
VERSION     DATAJL010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2375
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41152"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VHN39_02645"
     CDS             <1..188
                     /locus_tag="VHN39_02645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815263.1"
                     /translation="ADKDGFVYGRVTGLLQVGLQQNGPDRFYAPAADANITFDATGAT
                     LVGLDGGTMRAERTKAP"
     gene            complement(185..2101)
                     /gene="dxs"
                     /locus_tag="VHN39_02650"
     CDS             complement(185..2101)
                     /gene="dxs"
                     /locus_tag="VHN39_02650"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEX2815264.1"
                     /translation="MTTTPLLDTVASPADTRGMSIAQLRQLADELRAETIDAVSQTGG
                     HLGAGLGVVELTVALHHVYETPHDILIWDVGHQAYPHKILTGRRGRIRTLRQGGGLSG
                     FTKRAESEYDPFGAAHAATSVSAALGFAAARDRKGQDNKVVAVIGDGSMSAGMAYEAM
                     NNAAETTGQLTVILNDNDMSIAPPVGGMSAYMARLVSGGGYRSIRRVGKSVAKVFPKP
                     MQEAARKAEEYARGMVTGGTFFEELGFYYVGPIDGHDMDALVHVLQNARAITDKPVLV
                     HVVTQKGKGYGPAENAADKHHAVVKFDVVTGQQAKPTQAAAPSYTKVFAQELIKRAEL
                     DDKIVAITAAMPSGTGLDLFEQRFPERTFDVGIAEQHAVTFAAGLAADGMKPFAAIYS
                     TFLQRGYDQVVHDVAIQRLPVRFAMDRAGLVGADGPTHAGSFDVGFMGALPGMILMGP
                     SDEAELAHAIATAVEIDDRPSAFRYPRGEGTGVTIPELAAPYEIGKGRIVREGTAVAI
                     LSFGTRLGEALKAADMLAARGLSATVADARFAKPLDVELILRLARNHEALITVEEGAV
                     GGFGSFVLQTLAEHGALDRGLKVRSLVLPDIFQDQDKPEIMYAQAGLDAEGIVRGALA
                     ALGADNIAAKGWRA"
     gene            complement(2130..>2375)
                     /locus_tag="VHN39_02655"
     CDS             complement(2130..>2375)
                     /locus_tag="VHN39_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX2815265.1"
                     /translation="GLAYQIVDDLLDAEGDADSLGKAVGKDAAKGKANFVTLLGVEAA
                     RERLSLLSGQTKAHLEPFGEAAEFLRASVDFVLERRN"
BASE COUNT          348 a          778 c          864 g          385 t
ORIGIN      
        1 ccgccgacaa ggacgggttc gtgtacggcc gtgtgaccgg cctcctccag gttgggctgc
       61 agcagaacgg gccggatcgg ttctatgcgc ccgccgcgga cgccaacatc accttcgatg
      121 cgaccggcgc gacgctggtc ggcctggacg gcgggacgat gcgggccgaa cggaccaagg
      181 ccccctaggc gcgccagccc ttggcggcga tgttgtccgc gccgagggcg gccagggcgc
      241 cgcgtacgat cccctcggcg tcgaggccgg cctgggcgta catgatctcg ggcttgtcct
      301 ggtcctggaa gatgtccggc aggacgaggc tgcggacctt caggccgcgg tccagcgcgc
      361 cgtgttcggc cagcgtctga aggacgaagg agccgaagcc gccgaccgcg ccttcctcga
      421 cggtgatcag agcctcgtgg ttgcgggcga gcctgaggat cagctcgacg tccaacggct
      481 tggcgaaccg agcgtcggcc acggtggcgg aaagcccgcg cgcggccagc atgtcggcgg
      541 ccttgagcgc ctcgcccagg cgcgtgccga aggagaggat cgcgaccgcc gtgccttcgc
      601 ggacgatgcg gcccttgccg atctcgtagg gtgcggcgag ttcggggatc gtgacccccg
      661 ttccttctcc gcgcggatag cggaaggcgc tcggccgatc gtcgatctcc acggcggtgg
      721 cgatggcgtg ggccagttcg gcttcgtcgg aggggcccat caggatcatg ccgggcagcg
      781 cgcccatgaa acccacgtcg aaggagcccg catgggtcgg gccgtcggcg cccaccaagc
      841 ccgcgcggtc catggcgaag cgcaccggca ggcgctggat cgccacgtcg tgcacaacct
      901 ggtcgtagcc gcgctgaagg aaggtcgaat agatcgccgc gaacggcttc atcccatcgg
      961 cggcaaggcc agcggcgaag gtcaccgcgt gctgctcggc gatgcccacg tcgaaggtgc
     1021 gttccgggaa ccgctgctcg aagaggtcga ggccggtgcc ggacggcatg gccgcggtga
     1081 tggccacgat cttgtcgtcg agctcggccc gcttgatcag ttcctgggcg aagaccttgg
     1141 tgtagctggg cgccgcggct tgggtcggtt tcgcctgctg gccggtgacc acgtcgaact
     1201 tgaccaccgc atggtgcttg tcggcggcgt tctcggccgg gccgtagccc ttgcccttct
     1261 gggtgaccac atggaccagg accggcttgt cggtgatggc ccgcgcgttc tgcagaacgt
     1321 ggaccagcgc gtccatatcg tggccgtcga tcgggccaac gtagtagaag cccagttcct
     1381 cgaagaaggt gccgccggtg accatgccgc gggcgtattc ctcggccttg cgggcggcct
     1441 cctgcattgg cttggggaac accttggcca ccgacttgcc gacccggcgg atcgagcggt
     1501 agccgccgcc ggagaccagg cgggccatat aggcgctcat cccgcccacc ggcggggcga
     1561 tggacatgtc gttgtcgttg aggatgacgg tgagctggcc ggtggtctcg gcggcgttgt
     1621 tcatcgcctc ataggccatg ccggcgctca tcgacccgtc gccgatcacc gccacaacct
     1681 tgttgtcctg gcccttgcga tcgcgggccg cggcaaagcc gagggcagcc gacaccgagg
     1741 tcgccgcatg ggccgcgccg aacgggtcgt attcgctctc cgcccgcttg gtgaagccgg
     1801 acagcccgcc accctggcgc agggtgcgga tgcggccgcg gcggcccgtg agaatcttgt
     1861 gcggataagc ctggtggccg acgtcccaga tcaggatgtc atggggcgtc tcatagacgt
     1921 ggtgcagggc gacggtgagt tcgaccacgc ccaggcccgc gcccaggtga ccgccagtct
     1981 gggagactgc gtcgatggtc tcggcgcgaa gctcgtcggc gagttgccgg agctgggcga
     2041 tcgacatgcc tcgggtgtcg gcaggcgagg cgacggtgtc gagaagcggg gttgtggtca
     2101 tgggctaggc gaacgggacc gcgctgaaac tagtttcggc gctctaacac gaaatcgacg
     2161 ctcgcccgca ggaattcggc cgcctcgccg aagggttcca ggtgggcctt ggtctggccg
     2221 gagagcaggc tcagacgctc ccgcgcggcc tcgacgccca gcagggtgac gaagttcgcc
     2281 ttgcccttgg cggcgtcctt gccgaccgcc ttgccgaggc tgtcggcgtc accctcggcg
     2341 tccagcagat cgtcgacgat ctggtaggcg aggcc
//
LOCUS       DATAJL010000143         3976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_2405,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000143 DATAJL010000000
VERSION     DATAJL010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3976
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2405"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(75..557)
                     /locus_tag="VHN39_02660"
     CDS             complement(75..557)
                     /locus_tag="VHN39_02660"
                     /inference="COORDINATES: protein motif:HMM:NF017045.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreE"
                     /protein_id="HEX2815266.1"
                     /translation="MSATPISGVVPRGEWRAEPIDRVVLDYDGRHRRRIVLTGESGAT
                     YLLDLPQALHLRDGDGLRIAGRGVVAIVARPEPLLEIRAASPEALIRLAWHIGNRHLA
                     ASVQPGRILIRRDHVIAHMLEHQGASVREVEEAFDPEGGAYQDHGPHDHGHGDHHHDH
                     "
     gene            complement(557..2266)
                     /gene="ureC"
                     /locus_tag="VHN39_02665"
     CDS             complement(557..2266)
                     /gene="ureC"
                     /locus_tag="VHN39_02665"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HEX2815267.1"
                     /translation="MPARITRATYADMFGPTVGDRVRLADTELFIEVERDLTTYGEEV
                     TFGGGKVIRDGMGQSQMTRAEGAVDTVITNALIVDHWGIVKADVGLRDGRIHRIGKAG
                     NPDTQSGVTIVIGPGTEIIAGEGKILTAGAMDCHIHFICPQQIEEALMSGVTCMLGGG
                     TGPATGTKATTATPGPWHLARMIEAAEAFPMNIGFSGKGNASLPAALVEQVAAGACAL
                     KLHDDWGTTPGAIDCCLSVGDALDVQVMIHTDTLNESGFVEDTVAALKGRTIHAFHTE
                     GAGGGHAPDIIKVAGLANVIPSSTNPTRPYTRNTLAEHLDMLMVCHHLDPSIPEDVAF
                     AESRIRKETIAAEDILHDLGAFSIISSDSQAMGRVGEVLIRTWQTADKMKKQRGSLAG
                     DGAADNARVKRYVAKYTINPAIAHGMSAHIGSVEEGKRADLVLWDPAFFGVKPDLVLL
                     GGSIAAAPMGDPNASIPTPQPVHYRPMFAAYGKSLTRSSVTFVSHLAMDNDLRGSLGL
                     EKELLAVQNVRGGISKASMIHNSATPKIEVDPETYEVRADGELLTCEPADVLPMAQRY
                     FLF"
     gene            complement(2269..2574)
                     /locus_tag="VHN39_02670"
     CDS             complement(2269..2574)
                     /locus_tag="VHN39_02670"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HEX2815268.1"
                     /translation="MIPGEVITVPGDMELNAGAARLTLHVANTGDRPIQVGSHYHFAE
                     TNPALDFDRAAARGMRLDIAAGTAVRFEPGQAREVTLIPFGGARRVFGFRQAVMGGL"
     gene            complement(2585..2887)
                     /locus_tag="VHN39_02675"
     CDS             complement(2585..2887)
                     /locus_tag="VHN39_02675"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020045031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HEX2815269.1"
                     /translation="MNLTLREKDKLLIAMAAEVARKRLARGVKLNHPEAIALITDFVV
                     EGARDGRTVAELMEAGAHVITRAQVMEGIPEMIHDVQVEATFPDGTKLVTVHHPIR"
     gene            complement(2889..3725)
                     /locus_tag="VHN39_02680"
     CDS             complement(2889..3725)
                     /locus_tag="VHN39_02680"
                     /inference="COORDINATES: protein motif:HMM:NF013899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HEX2815270.1"
                     /translation="MIQDLASTADANPPLQRAQGAGRIAVKAEDGATRLARLYQDGCA
                     KIRLPTDHAARGLEAVLINTSGGLTGGDRMSWRVDAEARAALTLTTQACEKVYRARDG
                     RAEVTVSLNAARGARIDWLPQETILFDGAALARTLEADLAEDARLLAVEAVVLGRTAM
                     GETVRRGTLRDRWRIRREGRLVFADDLRFEGPIAEVAALAPTLAGGNAFASLLLVADD
                     AERFLTPVRAAIGPSGGASAFDGKLFARIVAADGLSLRRALLPAIAALRDGVPVPRVW
                     RL"
BASE COUNT          546 a         1282 c         1512 g          636 t
ORIGIN      
        1 gcccatgcga atagctgaag gcgcccaccg ggaaggccgg cgagagccag gtgaggaggc
       61 gcaggagatg ggcctcagtg gtcatggtga tgatcgccgt ggccgtgatc gtgcgggccg
      121 tggtcctgat aggcgccgcc ctccgggtcg aaggcctcct cgacctcgcg gacgctcgcg
      181 ccctggtgct ccagcatgtg ggcgatgacg tggtcgcggc ggatcaggat gcggccgggc
      241 tgcacgctgg cggccaggtg gcggttgccg atgtgccagg cgagccggat cagcgcctcg
      301 gggctggcgg cgcggatttc gagcaacggc tccggcctgg ccacgatggc gacgacaccg
      361 cggcccgcga tgcgcaggcc gtcaccgtcg cgcaggtgca gggcctgcgg caggtcgagg
      421 agataggtcg cgccgctttc gccggtgagc acgatgcggc ggcgatggcg gccgtcgtag
      481 tcgagcacca cccggtcgat gggctcggca cgccactcgc cgcgcggaac cacgccgctg
      541 atgggagttg ctgacatcag aacaggaaat accgctgcgc catcggcagg acatccgccg
      601 gttcgcaggt gaggagttcg ccgtcggcgc ggacctcgta ggtctccgga tcgacctcga
      661 tcttgggcgt cgcggaattg tggatcatcg aggctttcga gatgccgccc cggacgttct
      721 ggacggccag cagttctttc tccaggccaa gcgatccgcg caggtcgttg tccatggcca
      781 gatgcgaaac gaaggtcacc gacgagcggg tcagggactt gccgtaggct gcgaacatgg
      841 ggcggtagtg gaccggctgc ggcgtcggga tcgaggcgtt ggggtcgccc atgggcgccg
      901 cggcgatgga gccgcccagc aacaccaggt ccggcttcac cccgaagaag gccgggtccc
      961 agaggaccag gtcggcgcgc ttgccttcct cgacgctgcc gatgtgggcg ctcatcccat
     1021 gggcgatggc cgggttgatg gtgtatttgg cgacatagcg tttgacccgg gcgttatccg
     1081 ccgcgccgtc gccggccagg ctgccccgct gcttcttcat cttgtcggcc gtctgccagg
     1141 tgcggatcag cacctcgccg acgcggccca tggcctggct gtccgaagag atgatcgaga
     1201 aggcgccgag gtcgtgcagg atgtcttcgg ccgcgatggt ctccttgcgg atgcggctct
     1261 cggcgaaggc cacgtcctct gggatcgacg ggtccaggtg gtggcagacc atgagcatgt
     1321 cgagatgctc ggccagcgtg ttgcgggtgt agggccgcgt cgggttggtg gacgacggga
     1381 tgacgttcgc gagccccgcg accttgatga tgtccggcgc gtggccgccg ccggcgccct
     1441 cggtgtggaa ggcgtggatg gtgcggccct tgagcgccgc cacggtgtcc tcgacgaagc
     1501 cgctctcgtt gagcgtgtcg gtgtggatca tcacctgcac gtccagggcg tcgccgacgg
     1561 acaggcagca gtcgatggcg ccgggtgtcg tgccccagtc gtcgtgcagc ttcagcgcgc
     1621 aggccccggc ggccacctgt tcgacgaggg cggcgggcag gctggcgttg cccttgccgg
     1681 agaagccgat gttcatgggg aaggcctcgg cggcctcgat catccgcgca aggtgccagg
     1741 ggccgggcgt ggcggtggtg gccttggtcc ccgtcgcggg gcccgtgccg ccgcccagca
     1801 tgcaggtgac gccgctcatc agcgcctcct cgatctgctg ggggcagatg aagtggatgt
     1861 ggcagtccat ggcgccggcg gtgaggatct tgccctcgcc ggcgatgatc tcggtcccgg
     1921 ggccgatgac gatagtcacg ccgctctgcg tgtccggatt gccggccttg ccgatccggt
     1981 ggatgcgtcc gtcgcgcagg cccacgtcgg ccttcacgat cccccagtgg tcgacgatca
     2041 gcgcgttggt gatgactgtg tcgacggcgc cctcggcgcg ggtcatctgg ctctggccca
     2101 tgccgtcgcg gatcaccttg ccgccgccga aggtgacctc ctcgccatag gtggtcaggt
     2161 cgcgctcgac ctcgatgaag agctcggtgt cggccaagcg cacgcggtcg ccgaccgtgg
     2221 ggccgaacat atcggcatag gtggcgcggg tgatccgggc cggcatcgct agagcccgcc
     2281 catgacggct tgccggaagc cgaacacacg ccgcgcgccg ccaaagggaa tgagggtgac
     2341 ctcgcgcgcc tggccgggct cgaagcgcac ggcggtcccg gcggcgatgt cgaggcgcat
     2401 cccccgcgcg gcggcgcggt cgaagtcgag cgccggattg gtctcggcga aatggtagtg
     2461 gctgcccacc tggatcggcc ggtcgccggt gttggcgacg tgcagggtga gccgtgcggc
     2521 gcccgcgttg agctccatgt cgccggggac ggtgatgact tcgccgggga tcatctgggg
     2581 cgcctcagcg gatcgggtgg tggacggtga ccagcttggt cccgtcgggg aaggtggctt
     2641 ccacctggac gtcgtggatc atctcgggga tgccctccat gacctgcgcg cgggtgatga
     2701 cgtgggcgcc ggcctccatc agctcggcga ccgtgcggcc gtcgcgggcg ccctcgacca
     2761 cgaagtcggt gatcagcgcg atggcctccg ggtggttcag tttgacgccg cgggccaggc
     2821 gtttgcgggc cacctcggcg gccatggcga tcaagagctt gtccttttcg cggagggtca
     2881 ggttcatctc agagccgcca gacgcgaggg accggaacac cgtcgcggag cgcggcgata
     2941 gcgggcagga gggcgcggcg caggctgagg ccgtcggcgg cgacgatgcg ggcgaagagc
     3001 ttgccgtcga aggcgctggc gccgccagac gggccgatgg ccgcacggac cggcgtgagg
     3061 aagcgttcgg cgtcgtcggc gaccagcagc agggacgcga aggcgttgcc gcccgcgagt
     3121 gtcggcgcca gggccgcgac ttcggcgatg gggccttcga agcgaaggtc gtcggcgaag
     3181 accagcctgc cctcgcggcg gatgcgccag cggtcgcgga gcgttccgcg gcgcacggtt
     3241 tcgcccatgg ccgtgcggcc caggaccacg gcctcgacgg ccagcaggcg ggcgtcctcg
     3301 gcgagatccg cctccagggt gcgggccagc gccgcgccgt cgaacaggat ggtctcctgc
     3361 ggcagccagt cgatccgggc gccgcgcgcc gcgttcagtg agacggtgac ctcggcccgg
     3421 ccgtcccgcg cgcggtagac cttttcgcag gcctgggtgg tgagcgtgag ggccgcgcgg
     3481 gcctcggcgt ccacccgcca gctcatccgg tcgccgccgg tcaggccgcc ggaggtgttg
     3541 atcagcacgg cctccaggcc gcgcgccgca tggtccgtgg gcaggcggat tttggcgcag
     3601 ccgtcctggt agaggcgggc cagccgcgtc gcgccgtcct cggccttcac ggcgatgcgc
     3661 ccggcgccct gcgcgcgttg cagcggcgga ttggcgtcgg cggtggaggc gaggtcctgg
     3721 atcacgtgcg gctgagccta gaggcggcgc gtttgcctct gtccagagga ggggtcggcg
     3781 cataggtccg tcaagtcccg gcgcccgttt cctgggcgcc cgccgccacg gtgatcgcgg
     3841 acaaagcaca accatttcag ggacgtgccg cacccacagc aaagtcgtaa tgcttgccaa
     3901 gtgaaatgag tgggcgttta atctccgctc aaaggcccca agccggcgaa cggcgcaggg
     3961 cctttttcga ttccgg
//
LOCUS       DATAJL010000144         5737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41168,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000144 DATAJL010000000
VERSION     DATAJL010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5737
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41168"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            273..1946
                     /locus_tag="VHN39_02685"
     CDS             273..1946
                     /locus_tag="VHN39_02685"
                     /EC_number="1.5.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004174 -
                     electron-transferring-flavoprotein dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein-ubiquinone
                     oxidoreductase"
                     /protein_id="HEX2815271.1"
                     /translation="MSEDAEREAMEYDVVIVGAGPSGLSAAIRLKQLAAAAGTEITVA
                     VLEKGSEVGAHILSGAVIDPKGLNELLPDWKAMGAPLETPVTADRFVLLGPQGSAALP
                     MFAMPGLMHNHGNYIASLANVCRWLGQQAEALGVEVYPGMAASEAVFDEGGALKGVVA
                     GVFGVDKTGQKGPDYQPGIELHGKYVFIGEGVRGSLSKQLRAKYSLAEGADPEKYGIG
                     LKEIWQVPDEVFQAGLVQHTVGWPLEDSTGGGSFLYHFGDNYVSVGFVVHLNYKNPWL
                     SPFDEFQRFKKHPEIAKYLAGGKRIAYGARAISEGGLQSLPRLYFPGGVLLGDSAGLV
                     NVPRIKGSHNAMKSGMMAAEAAYAAIQAGRTRDDLVEYEAAHQASWVRKELHTARNFK
                     PILTRFGTLLGGALGMFDLWCTSLLGGFSFFGTMRHGKSDADSTGLAKDFKPIVYPKP
                     DGVLSFDKLSSVFLSNTNHDENQPAHLKLRDAAVPISINLPKYGEPARLYCPAGVYEV
                     LYDDKGENPKFQINFQNCVHCKTCDIKDPSQNIDWTTPQGGDGPNYPNM"
     gene            2013..3713
                     /locus_tag="VHN39_02690"
     CDS             2013..3713
                     /locus_tag="VHN39_02690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2815272.1"
                     /translation="MRLLLLLTAAAPLVLLAACATAPGAGGSSRTNAVETKVSPYGMY
                     LAGESALNNGRSVDAAKFFDQARAQTGDPMIAERAFTSALLSGDIQKAAALAPTGEDA
                     AEASKRLGKLVVAVEDMADGKGKEASALLANDSISIPHKSAAALLAPWAAAQAGDLEG
                     ALVRPQVRGDRLVDYFGQLGQAALFERFKRYDEAETDFKAVVSVSTPTEMAVLAYGGF
                     LERRGRQVDALALYGEQLAREPDSIAVKAAKTRASAGKGAPAMPTLREGAAQALLAPS
                     ATMIAAKQTQLALAYLRLVIRLDPQRDEAWVMVGDLMQGSGDTDSARTAYAHPKPGST
                     EFSTAQAKLAWTYQSNDDKETALKLARAAAASGDIDARVTLADLLRSNEQYAEAVQVL
                     DGVIAQSKTPDWRLLYSRGVAYERLNRWPESQADLQAALKQRPDEPELLNYLGYSWID
                     RGEHLVEARAMIEKAVATDPRSGAMVDSLGWAFYRMGDYKKAVEKLEEAVELEAGDPE
                     INNHLGDAYWKVGRRDEAQFQWRRVLTLKPDDKIKANAEAKLASGLGPDGPTPKLAGS
                     "
     gene            3716..4606
                     /locus_tag="VHN39_02695"
     CDS             3716..4606
                     /locus_tag="VHN39_02695"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEX2815273.1"
                     /translation="MARAAFAPAKLNLFLHVGAPTGDGYHPICSLMAFADFGDRVSTF
                     DAEALCLAVAGPFATDLAGEDDNLVLRAARALIAEARRPVAPVGLSLEKLLPVASGLG
                     GGSSDAGAALRLLRETFGLSLDNARLEALAAALGSDGAACLWGAPAIAEGRGERLSLA
                     PGLPPLDAVLVRAPATVSTAAVYRRFDELGRFGEVARPALPDAFEDAIDLAAWLSGQR
                     NDLEAAAIAVAPEVGTVLETLANEPEALLARVSGSGGACFALCASDIEAESLAERLEA
                     MAPDWWVQRCRLGGPWPDPE"
     gene            complement(4670..>5737)
                     /locus_tag="VHN39_02700"
     CDS             complement(4670..>5737)
                     /locus_tag="VHN39_02700"
                     /inference="COORDINATES: protein motif:HMM:TIGR00836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX2815274.1"
                     /translation="IIGYSLAFTGGGDGIHKWIGDTKYAFLAPMGLNATSSLAPTIPE
                     SVYMFFQMTFAIITPALIAGALADRMKFSAFLAFMGSWLLLVYCPIAHWVWGGGWLGT
                     MGALDYAGGTVVHLNAGTAGLVAALMLGKRKGLGTENMAPHNLAYSVIGASLLWVGWF
                     GFNAGSAVTSNVNAGMAAAATQIATAAAALAWMFAEWIISKKPSVLGMVSGAVAGLVA
                     ITPASGFVNPMGALIIGISAGVVCYISAVHVKKIFGYDDALDCWGVHGVGGALGALLT
                     GVFASKLINPGSAPKGGLLEGNAHQMVLQFYDVGATFLYCGAVTFVILLVIKYTIGLR
                     VSEEVEVEGLDINLHGEVVQA"
BASE COUNT          944 a         1937 c         2001 g          855 t
ORIGIN      
        1 agctgggtgt tgtcgggaac cgtgcgccga ctgcggctgc ggcggccatg ggcggcgcgg
       61 gcgaggcgcc ccagctgccc agccaccgcg tcgcggccgc ttcggcatga gaggcggcgg
      121 cgagcgcccg ggtgcagacc agggccgtga aacgcatgcc gttcttccct ttggcgtcgt
      181 ggacgccgct tcctcgcgcg tcaggttctt gcttgaccat tgctaggtga ccttcggata
      241 agtcacgggg cggatcaacg gagcactggg gcatgagcga agacgctgag cgcgaggcga
      301 tggaatatga cgtcgtcatc gtgggcgcgg ggccgtcggg cctgtccgcg gcgatccggc
      361 tgaagcagct cgcggcggcc gccgggaccg agatcaccgt ggcggtgctg gagaagggct
      421 ccgaggtcgg ggcgcacatc ctgtcgggcg ccgtgatcga ccccaaaggc ctgaacgagc
      481 tgctccccga ctggaaggcc atgggcgcgc ctctggagac gccggtcacc gcggacaggt
      541 tcgtgttgct ggggccccag ggttccgcgg cgctgccgat gttcgccatg ccggggctca
      601 tgcacaacca tggcaactac atcgcctcgc tggccaacgt ctgccggtgg cttggccagc
      661 aggccgaggc gctgggcgtc gaggtctatc cgggcatggc ggcctccgag gccgtgttcg
      721 acgagggtgg tgcgctgaag ggcgtggtgg ccggcgtctt cggcgtcgac aagaccggcc
      781 agaagggccc cgactaccag ccgggcatcg aactgcacgg caagtacgtc ttcatcggcg
      841 agggcgtgcg cggatcgctc tcgaaacagc tgcgggcgaa atacagcctg gcagaggggg
      901 ccgaccccga aaagtacggc atcgggctga aggagatctg gcaggttccg gacgaggtct
      961 tccaggctgg tcttgtgcag cacaccgtgg gctggccgct ggaggattcc accggcggcg
     1021 gcagcttcct ctaccacttc ggcgacaact acgtgtccgt cggcttcgtg gtgcacctga
     1081 actacaagaa cccctggctc tccccgttcg acgagttcca gcggttcaag aagcacccgg
     1141 agatcgccaa atacctggcg ggcggcaagc gcatcgccta cggcgcccgg gccatcagcg
     1201 agggcgggct ccaatccctc ccccggctct atttcccggg cggcgtgctg ctcggcgaca
     1261 gcgccggctt ggtgaatgtg ccgaggatca agggcagcca caacgccatg aagagcggca
     1321 tgatggccgc cgaggccgcc tacgcggcga tccaggccgg tcgcacgcgg gatgacctag
     1381 tggaatacga agcggctcat caggcgtcct gggtgcgcaa ggaactgcac accgcgcgca
     1441 acttcaagcc gatcctgacc aggttcggga cgctcctggg cggcgcgctc ggcatgttcg
     1501 acctgtggtg cacgagcctg ctcggcggct tctcgttctt cgggacgatg cgccacggca
     1561 agagcgacgc cgactccacc ggcctggcca aggacttcaa gcccatcgtc tatccaaagc
     1621 cggacggggt tctgagcttc gacaagctct ccagcgtgtt cctgtccaac accaaccacg
     1681 acgagaacca gccggcgcac ctgaagctgc gcgacgcggc cgtgccgatc tcgatcaacc
     1741 tgccgaaata tggggagccg gcgcggctct actgtccggc cggcgtttat gaggtgctct
     1801 acgacgacaa gggcgagaac ccgaagttcc agatcaattt ccagaactgc gtccactgca
     1861 agacctgcga catcaaggac ccgtcgcaga acatcgactg gacgacgccg cagggcggcg
     1921 acgggccgaa ctatccaaat atgtaacggt ctcttgcttc agtgacagca cgccgccttg
     1981 ccgcggccat cgttaggtcc gaaggtcaga ccatgcgcct gcttctgctg ctcaccgccg
     2041 ccgccccgct cgtcctgctt gccgcctgcg ccaccgcgcc cggtgcgggg ggatcctccc
     2101 ggaccaacgc tgtcgaaaca aaggtgtcgc cctacggcat gtacctggcc ggcgagtcgg
     2161 cgctgaacaa cggccgcagc gtcgatgcgg cgaagttctt cgatcaggcg cgcgctcaga
     2221 ccggcgaccc gatgatcgcc gagcgggcct tcacctcggc gctgctgtcg ggcgatatcc
     2281 agaaggccgc tgcgctggcc cccaccggtg aggacgcggc cgaagcctcc aagcggctgg
     2341 gcaagctggt ggtggctgtc gaggacatgg ccgacggcaa gggcaaggag gcaagcgccc
     2401 tgctggccaa cgacagcata tccatcccgc acaaatccgc cgcggccctg ctggcgccct
     2461 gggcggcggc ccaggccggc gatctggagg gagccctggt gcggcctcag gtgcgcggcg
     2521 accggctggt ggactatttc ggccagctcg gccaggcggc gctcttcgag cgcttcaagc
     2581 gctatgacga ggcggagacc gacttcaagg ccgtggtatc ggtcagcacg cccaccgaga
     2641 tggcggtcct ggcctacggc ggcttcctgg aacggcgcgg ccgccaggtg gacgccctgg
     2701 cgctttatgg cgagcagctc gcccgcgagc cggacagcat cgcggtgaag gccgccaaga
     2761 cgcgggcctc ggccggcaag ggcgcgcccg ccatgccgac gctccgcgaa ggcgccgccc
     2821 aggcgctgct cgcgccctcg gccaccatga tcgcggccaa acagacccaa ctggcgttgg
     2881 cctatctgcg cctggtgatc cgcctggatc cgcagcggga cgaggcctgg gtgatggtcg
     2941 gcgacctgat gcaggggtcg ggcgatacgg actcggcgcg cacggcctac gcccacccga
     3001 agcccggttc gaccgagttc agcaccgccc aggccaagct cgcctggacc taccagagca
     3061 acgacgacaa ggagacggcg ctgaagctcg cccgcgccgc ggcggcctcc ggcgacatcg
     3121 acgcgcgcgt gacgctggcc gacctgctgc gctccaacga acaatatgcc gaggctgtgc
     3181 aggtgctgga cggggtgatc gcccagtcca agacgcccga ctggcggctg ctctattcgc
     3241 ggggcgtcgc ctacgagcga ttgaaccgct ggccggagag ccaggccgac ctgcaggcgg
     3301 ccctgaagca gcggccggac gagccggagc tcctgaacta cctgggctat tcctggatcg
     3361 accgcggcga gcatctggtc gaggcccgcg cgatgatcga gaaggccgtg gccaccgatc
     3421 cgcgctccgg cgccatggtg gattccctcg gctgggcctt ctaccggatg ggcgactaca
     3481 agaaggcggt cgagaagctc gaggaagcgg tcgagctcga agcgggcgat ccggagatca
     3541 acaaccacct gggcgacgcc tactggaagg tcggccgcag ggacgaggcg cagttccagt
     3601 ggcgccgggt cctgacgctc aagcccgacg acaagatcaa ggccaacgcc gaagccaagc
     3661 tggcctcggg cctgggcccc gacgggccga ccccgaagct cgccggaagc tagtcatggc
     3721 gcgcgcggcg ttcgcgcccg ccaagctcaa tctcttcctg catgtcggag cgccgaccgg
     3781 cgacggctac cacccgatct gcagcctgat ggccttcgcc gacttcggcg accgggtctc
     3841 gaccttcgac gccgaggcgc tgtgcctggc cgtggcgggg ccgttcgcga ccgacctggc
     3901 tggcgaggac gacaacctgg ttctgcgcgc ggcgcgggcg cttatcgccg aggccagacg
     3961 gccggtggcg ccggtggggc tcagccttga gaagctgctg ccggtggcct ccggcctggg
     4021 cggcggctcc agcgacgcgg gcgcggcgct tcggctactg cgcgagacct tcggcctttc
     4081 gctggacaac gcccggctgg aagccctggc cgcggcgctg ggatctgacg gcgcggcgtg
     4141 cctgtggggg gcgccggcga tcgccgaggg caggggagag cgcctctcgc tcgccccggg
     4201 cctgccgccg ctggacgccg tgctggtccg ggcgccggcg acggtctcga ccgccgcggt
     4261 ctaccggcga ttcgatgaac tgggccggtt tggcgaggtg gcccgtcccg ctctgccgga
     4321 cgccttcgag gacgccatcg atctggcggc ttggctctcg ggtcagcgca acgatctcga
     4381 ggcggccgcg atcgcggtcg cccctgaggt ggggacggtg ctggagaccc tggccaatga
     4441 accggaggct ctgctggctc gtgtgtccgg ctccggcggc gcctgctttg cgctctgcgc
     4501 cagcgacatc gaggccgaga gcctcgcgga acgtctcgag gccatggcgc ccgactggtg
     4561 ggtccagcgc tgccgccttg gcggcccgtg gcccgatccc gaatagcgca gactaaaacg
     4621 ggggccccga aggacccccg ttccccacgc tgtagctcct cgggcgtgac taggcttgca
     4681 ccacttcgcc gtggagattg atgtcgaggc cctccacttc gacctcttcg ctcacccgca
     4741 ggccgatcgt gtacttgatc accaggagga tcacgaacgt caccgcgccg cagtagagga
     4801 aggtcgcgcc gacgtcatag aactgcagca ccatctggtg ggcgttgccc tccagcaggc
     4861 cgcccttggg cgccgacccg ggattgatca gcttgctggc gaagacgccc gtaagcagcg
     4921 cacccagggc cccgcctacg ccgtgcacgc cccagcagtc gagcgcgtcg tcgtagccga
     4981 agatcttctt cacgtggacc gccgagatgt agcagaccac gccggccgag atgccgatga
     5041 tcagcgcgcc catcgggttg acgaagccgg aagcgggcgt gatggccacc aggccggcga
     5101 ccgcgcccga gaccatgccc aggaccgaag gcttcttgga gatgatccat tcggcaaaca
     5161 tccaggcgag cgccgcggcg gccgtggcga tctgggtcgc tgcggcggcc atgccggcgt
     5221 tgacgttgga ggtcaccgcc gaaccggcgt tgaagccgaa ccagccgacc cacagcaagg
     5281 acgccccgat cacgctatag gcgaggttgt gcggggccat gttctcggtc cccagtccct
     5341 tgcgcttgcc gagcatcaag gccgccacca agcctgcggt gccggcgttg aggtgcacga
     5401 cggtgccgcc ggcgtagtca agcgcgccca tggtccccag ccagccgccg ccccacaccc
     5461 agtgggcgat cgggcaatag accagcagca gccaggatcc catgaaggcc aggaaggccg
     5521 agaacttcat gcgatcggcg agagctccgg cgatcagggc cggggtgatg atcgcgaagg
     5581 tcatctggaa gaacatgtag acggattcag ggatcgtcgg cgccagcgaa ctggtcgcgt
     5641 tcaggcccat cggcgccagg aaggcgtatt tggtgtcgcc gatccatttg tggatgccgt
     5701 cgccgccgcc ggtgaaggcg agcgagtagc cgatgat
//
LOCUS       DATAJL010000145         2910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78619,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000145 DATAJL010000000
VERSION     DATAJL010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2910
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78619"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..215)
                     /locus_tag="VHN39_02705"
     CDS             complement(<1..215)
                     /locus_tag="VHN39_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family drug resistance efflux
                     transporter"
                     /protein_id="HEX2815275.1"
                     /translation="MTAQLQPERTPWGLVILLGSLTAMGPVAIDMYLPSLPAIGVGLN
                     ASAGEAQATVSAFLAGMAVGQLFYGPAS"
     gene            308..1288
                     /locus_tag="VHN39_02710"
     CDS             308..1288
                     /locus_tag="VHN39_02710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815276.1"
                     /translation="MSALESQMPPVKRATVNGIELAYYEAGPREGVPVILCHGFPELA
                     FSWRHQLKAFEAAGRRVIAPDQRGYGLSSRPEAVIDYDMAHLTGDLVALLDHLGVEKA
                     IFCGHDWGGFVVWQMPLMHPSRVAGVIGLNTPFLPRSPMDPIALMRLRFGPDMYIVWF
                     QTPDEPDAALAADVEKTIRFFMRKPAGLQTVAPQTEGGSTFALGELLKQWDASDIGSQ
                     MLTSEELAAFVETFQATGFTGGINWYRNFTRNWEASEGLPARLDDLPCLMITAELDPV
                     LAPALAEGMPGLINDLEMHMVAGSGHWTQQERPEEVNRLMLDWLQRRFPK"
     gene            1298..2290
                     /gene="pip"
                     /locus_tag="VHN39_02715"
     CDS             1298..2290
                     /gene="pip"
                     /locus_tag="VHN39_02715"
                     /EC_number="3.4.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0030163 - protein catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl aminopeptidase"
                     /protein_id="HEX2815277.1"
                     /translation="MERSTPTPAVSAAANRRGLFADNEPFASGWLPPAQGHEIYFEEC
                     GNPQGKPCVILHGGPGGAINPTMRRFFDPSKWRMALFDQRGCGKSRPNASLDDNTTWT
                     LIEDIERLRVHLGVETWCVFGGSWGSTLALAYAIKHPERVESLVLRGVFLLTERELAW
                     FYQDGACMLFPDAWARFCAPIPLAERGDMIGAYHKRLIHPERRVQAEAAAAWSQWEGD
                     TISIRGPEARPSKFNEVDFAIAFARIECHFFANHGFFPEEGWILKNAHALKDIPGWIV
                     QGRFDVVTPMEAAWKLKAAWPRTRFEVVWDAGHASTEPGIVDALVRATDQALSV"
     gene            2371..2769
                     /locus_tag="VHN39_02720"
     CDS             2371..2769
                     /locus_tag="VHN39_02720"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX2815278.1"
                     /translation="MRHNLLVAVAAASLMVASAASAQMAHYTAKLAGAAGVKGSGDVM
                     AMLDGKTFTYTVNYKDLTGPATAAHFHDAPTPGGNGPPIVPATVAPMTIKGTATLTDA
                     QIADLNAGKVYFNVHTAANPGGEIRGTLSK"
     gene            complement(2801..>2910)
                     /locus_tag="VHN39_02725"
     CDS             complement(2801..>2910)
                     /locus_tag="VHN39_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815279.1"
                     /translation="YGGTVMLTVMVGFGLVMAVRVHRYSEVTSGKGSLL"
BASE COUNT          479 a         1016 c          962 g          453 t
ORIGIN      
        1 gacgccggac cgtagaagag ctgccccacc gccatgcccg ccaggaaggc cgagacggtc
       61 gcctgggcct cgccggccga ggcgttcaag cccaccccga tcgccggcag gcttggcagg
      121 tacatgtcga tggccaccgg ccccatggcg gtgagcgagc ccagcaggat caccaggccc
      181 caaggggtgc gttcgggttg gagctgcgcc gtcatgggcg tcttcatacc ggctttgccg
      241 ccgctgtctt ccccgttcca gccgaccgga tttgctgcaa aggtggcccg gtcagaagga
      301 gcccctcatg tccgcgctcg aaagccagat gccgccggtc aagcgcgcga cggtgaacgg
      361 catcgagttg gcctattacg aggccggccc ccgcgagggc gtgcccgtca tcctctgcca
      421 tggcttcccg gaactggcct tctcatggcg tcatcagctg aaggctttcg aggccgccgg
      481 ccggcgggtg atcgcgccgg accagcgggg gtacggcctc tcctcgcggc ctgaggccgt
      541 catcgactat gacatggccc acctgacagg cgacctcgtg gctctgctgg atcacctcgg
      601 cgtcgagaag gcgatcttct gcggccacga ctggggcggc ttcgtcgtgt ggcagatgcc
      661 cctgatgcat ccgagccgcg tggcgggcgt catcggcctc aacacgccct tcctgccgcg
      721 ctcgccgatg gatcccatcg cgctgatgcg cctgcgcttt gggccggaca tgtatatcgt
      781 ctggttccag accccggacg agcccgatgc cgcgctggcc gccgacgtcg aaaagaccat
      841 ccgcttcttc atgcgcaagc cggccggcct gcagaccgtt gcgccgcaga ccgagggcgg
      901 ctcgaccttc gcgcttgggg aactgctcaa gcagtgggac gccagcgaca tcggcagcca
      961 gatgctgacc tctgaggagc tggccgcctt cgtggagacc ttccaggcca cgggcttcac
     1021 cggcggcatc aattggtacc gcaacttcac acgcaactgg gaggcctcgg agggcctgcc
     1081 ggctcgcctc gacgacctgc cctgtctgat gatcaccgca gagctcgacc cggtgctcgc
     1141 gcccgccctc gccgagggca tgccagggct gatcaacgac ctggaaatgc acatggtggc
     1201 cggttctggc cactggacgc agcaggaaag gccggaagag gtgaaccggc tcatgctgga
     1261 ctggctccaa aggcgcttcc cgaagtagat tgagcggatg gaacgcagca cgcccacgcc
     1321 cgccgtctcg gccgccgcaa atcggcgggg gctgttcgct gacaacgagc ccttcgcctc
     1381 cggctggctg ccgcccgctc agggacacga aatctacttc gaagagtgcg gcaacccgca
     1441 gggcaagccc tgcgtgatcc tgcacggcgg ccctggcggg gcgatcaatc cgaccatgcg
     1501 gcggttcttc gacccgtcga agtggcgcat ggcgctgttc gatcagcgcg gctgcggcaa
     1561 gagccggccc aacgcctcgc tcgacgacaa caccacctgg acgctgatcg aggacatcga
     1621 gcggctgcgc gtccatctgg gtgtcgagac gtggtgcgtg ttcggcggtt cctggggctc
     1681 cacgctggcg ctcgcctatg cgatcaaaca tccggagcgc gtggaaagcc tggtgctgcg
     1741 cggggtcttc ctgctcaccg agcgcgagct tgcctggttc taccaggacg gcgcctgcat
     1801 gctgttcccc gacgcctggg cccggttctg cgcgccgatc cccctggccg agcggggcga
     1861 catgatcggg gcctaccaca agcgcctgat ccaccccgag cggcgggttc aggccgaggc
     1921 ggcggcggcc tggagccagt gggaaggcga caccatctcg atccgcggac cggaagcccg
     1981 gccgtccaag ttcaacgagg tcgacttcgc catcgcgttc gcccgcatcg aatgccactt
     2041 cttcgccaac catggcttct tcccggaaga gggctggatc ctgaagaacg ctcacgccct
     2101 gaaggacatc cccggctgga tcgtccaggg ccgtttcgac gtggtgacgc cgatggaggc
     2161 cgcgtggaag ctgaaggccg cctggccgcg gacccgcttc gaagtggtct gggacgcggg
     2221 tcacgcgtcc accgagcccg gcatcgtcga cgctctagtg cgcgccaccg atcaggcgct
     2281 tagcgtctaa ggctggttgc gcggtccggc ataggcgcgc aacttgcgcg ccggtccggg
     2341 ggcattccgg aaacgaggga gaaacatccg atgcgtcata accttttggt cgccgtcgcg
     2401 gccgcgagcc tgatggtcgc cagcgcagcg tccgcccaga tggcccacta caccgccaag
     2461 ctggccggcg cagcgggcgt caagggcagc ggcgacgtga tggccatgct ggacggcaag
     2521 accttcacct acacggtcaa ctacaaggac ctgaccggcc cggcgaccgc ggcccacttc
     2581 catgacgccc cgacgcctgg cggcaacggc ccgccgatcg tgcctgccac cgtggcgccc
     2641 atgaccatca agggcacggc gaccctgacc gacgcccaga tcgccgacct gaacgccggc
     2701 aaggtctatt tcaacgtgca caccgccgcg aatccgggcg gcgaaatccg cggcacgctg
     2761 tcgaagtagc cgcctctgcc ggacggcggg gctcgcgcgc ctagagcagc gagcccttgc
     2821 cgctggtgac ttcggagtag cggtggacgc ggacggccat gaccaggcca aagcccacca
     2881 tgacggtcag catcaccgtg cctccgtagg
//
LOCUS       DATAJL010000146         2640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28154,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000146 DATAJL010000000
VERSION     DATAJL010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28154"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1410)
                     /locus_tag="VHN39_02730"
     CDS             complement(<1..1410)
                     /locus_tag="VHN39_02730"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2815280.1"
                     /translation="MIVRRLLLTDFLRYKDATIDLPEVGLVAFCGLNGSGKSSCLEAI
                     AWTLWGRSLRGADDPGPAGSALLSLDDGLQVERQRAGRVTKGLTLSTAAESLSGQTVT
                     QTQAKIVERWGTFERFAATRVFGRDLLSRFGTATNKERQQLLESILGFEQFSRAEKLA
                     RAELSTRRSAQDGADSALRYAEKVLQDAQERAQGSGPPPNLLVLQDEIDASLRARQAA
                     EGALAKARAARDRSASLLDRQRRARYDAGHEADQAKAETMVAAGKIQAARKLLECPVC
                     FRGASEEERGVIVAHHQATLNAAAKRKADATNLTEALDADMEDLGAQVAIHDKVIRAA
                     DQDRSVASIAYEQAKADLRVAQAANAQAMRAADEIDKADSLVVATSNVAVTARGAVQQ
                     AQAAVEALGPRGARLRLFSDALQRLEAETNTVLDRLGMGLAVEISARKTQASGKEVDE
                     VSITLKGAGAGEYLGASGGE"
     gene            complement(1407..1655)
                     /locus_tag="VHN39_02735"
     CDS             complement(1407..1655)
                     /locus_tag="VHN39_02735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815281.1"
                     /translation="MSNSNAENACLEFYVASRELLLIEGAWATRDRDVNIGWRLNEAT
                     QYQADKEEATLRVKNAEFEIKNIGAVLYVQGRPSTVPR"
     gene            complement(1652..1852)
                     /locus_tag="VHN39_02740"
     CDS             complement(1652..1852)
                     /locus_tag="VHN39_02740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815282.1"
                     /translation="MQTQDVEIEAETVVVKIEVESVLVTLWQSTVTVDGSVRYTAAFE
                     NSPAAAFIKALDFARGANLVRQ"
     gene            complement(1867..>2640)
                     /locus_tag="VHN39_02745"
     CDS             complement(1867..>2640)
                     /locus_tag="VHN39_02745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815283.1"
                     /translation="IVGSPERMVLSTFAIVAVPFDARAPMRKVLDECPLLEKPNADES
                     RRTILVTHVGVYDDSDAKSSPWVRLAKDGISDTEMFAIMKRAGIRLAFVGNFHEHRQW
                     TDPDGRTIVQCGTLAPHSFSDAGTHQRGLVILTDGEMIKTSEARGVRFVNFRGNDPNH
                     LDSLTQGISKGNRYVVRQTGGARWEESEIKELLAYEWVPEKAPTEKASGGPAPTSAPD
                     PMAALTAHLAAAPMPPELDSTVARASVLALVKDFWKRSA"
BASE COUNT          357 a          893 c          905 g          485 t
ORIGIN      
        1 ctctccgccc gacgccccga ggtactcgcc ggcacctgcg cccttgagcg tgatcgagac
       61 ctcgtcgact tccttgcccg atgcctgggt cttgcgggcc gagatttcga cggcgagccc
      121 catcccgagg cggtcgagca cggtgttggt ctcggcttcc aggcgttgga gggcatcgct
      181 gaacagtctg agacgcgcgc cacggggccc aagggcctcg acggctgcct gggcctgctg
      241 gacggctcct cgtgccgtga cggcgacgtt ggacgttgcc acgaccaggg agtccgcctt
      301 gtcgatctcg tcggcggcgc gcatggcttg ggcattggcg gcttgggcca ccctgaggtc
      361 tgccttggct tgctcgtagg cgatggacgc gacgctccga tcttggtcgg cggctcggat
      421 caccttgtcg tggatcgcga cctgggcgcc gaggtcctcc atgtcggcgt cgagcgcctc
      481 ggtgaggttc gtggcgtccg ctttgcgctt ggcggcggcg ttgagggtgg cctgatggtg
      541 ggcgacgatg acgccccttt cctcctcgga cgcgccccgg aaacacaccg ggcactcaag
      601 cagcttgcgg gccgcctgga tcttgccggc cgccaccatc gtctcggcct tggcctggtc
      661 ggcttcgtga cccgcgtcat accgagcccg gcgctggcgg tcaaggaggg acgcggagcg
      721 gtcgcgggcg gcgcgcgcct tcgcgagggc cccctccgct gcttggcgtg cgcgtaggga
      781 cgcgtctatc tcgtcctgga gcaccaggag gttcgggggc ggtcccgagc cctgggcgcg
      841 ctcctgcgcg tcctggagca ccttctcggc gtaccggagg gccgagtccg ccccgtcctg
      901 ggccgagcgc cgcgtcgaaa gctcggcccg ggccagcttc tctgcccggg agaactgctc
      961 gaacccgagg atggactcca ggagttgttg acgctccttg ttggtcgccg tgccgaacct
     1021 ggacaggagg tcacggccga acaccctggt tgccgcgaac cgctcgaagg ttccccaccg
     1081 ctccacgatc ttggcctggg tctgggtcac ggtctggccg gacagggact cggcggcggt
     1141 ggacagggtc aagcccttgg tcaccctgcc ggcgcgctgg cgctcgacct ggagaccgtc
     1201 gtccaggctg agcagagctg aaccggcggg gccggggtcg tcggcgccgc ggagggagcg
     1261 gccccagagc gtccaggcga tggcctccag gcagctactc tttccgctac cgttcaggcc
     1321 acagaacgcc acgagcccga cctcgggcag gtcgatggtc gcgtccttgt agcgcaagaa
     1381 gtcggtcagg aggagccggc ggacaatcat cgcggcaccg tacttggccg tccttgtacg
     1441 tagagcaccg cgccgatgtt cttgatctcg aactcggcat tcttgaccct caaggtcgcc
     1501 tcctccttgt cggcctggta ctgggtggct tcgttcagtc gccacccgat gttgacgtcc
     1561 cgatccctgg tcgcccatgc gccttcgatc aggagaagct cccggctggc gacgtagaac
     1621 tccaggcatg cgttctcggc gttgctgttg ctcactgtct caccaggttc gcgccgcgcg
     1681 cgaagtcgag ggccttgatg aacgcggcag cggggctgtt ctcgaatgcc gccgtgtagc
     1741 ggacggagcc atcgaccgtc accgtcgact gccagagggt cacgaggaca gactcgacct
     1801 cgatcttgac gacaaccgtc tcggcttcga tctcaacgtc ttgggtttgc atgggtggtg
     1861 gtcctttcag gcggagcgtt tccagaagtc cttgaccagc gcgagcacgc tggcgcgcgc
     1921 cactgtcgaa tccagctcag gcggcatcgg ggcggcggcg aggtgcgccg tcagcgcggc
     1981 catcggatcg ggggcggacg tcggcgccgg gcccccgctg gccttctcgg tcggcgcctt
     2041 ctcggggacc cactcgtagg ccagcagttc cttgatctcc gactcctccc agcgcgcgcc
     2101 gcccgtctgc cgaaccacgt agcgattgcc cttgctgatc ccctgggtga ggctgtcgag
     2161 gtggttcggg tcattccccc gaaagttcac gaaccggacg ccgcgcgcct cactcgtctt
     2221 gatcatctcg ccgtccgtca ggatgacgag cccccgctgg tgagtcccgg cgtcgctgaa
     2281 gctgtgcggg gccagcgtgc cgcactggac aatggtgcgg ccgtccgggt ccgtccactg
     2341 ccgatgctcg tggaagttcc ccacgaacgc caggcggatg ccggcgcgct tcatgatcgc
     2401 gaacatctcc gtgtccgaga ttccgtcctt ggccagacga acccagggcg aggacttggc
     2461 gtccgagtca tcgtagaccc cgacgtgcgt gacaaggatg gtccgccggc tctcgtcggc
     2521 gtttggcttc tccaggagcg ggcactcgtc caggaccttg cgcatcgggg cgcgggcgtc
     2581 gaacggtacc gcgacgatgg cgaacgtgct cagcaccatg cgctccggac tgccgacgat
//
LOCUS       DATAJL010000147         2795 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41243,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000147 DATAJL010000000
VERSION     DATAJL010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41243"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..504)
                     /locus_tag="VHN39_02750"
     CDS             complement(202..504)
                     /locus_tag="VHN39_02750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815284.1"
                     /translation="MISALLTAAVLFAQAAPTSAPSAAPPVAGRTVSPVTVTPEPSIS
                     KRREADPTVVVCTSELPIGSRFPVKTCATRRERQQRTQEDQMEVRRWTALRPGSGN"
     gene            complement(920..>2795)
                     /locus_tag="VHN39_02755"
     CDS             complement(920..>2795)
                     /locus_tag="VHN39_02755"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815285.1"
                     /translation="LGPGRDKLLLRGLSDGAYTGRARSTVATYLDDIPINYNAPDPDL
                     RLVDVERVEIARGPQSTLYGAGFLSGLYRIVLRKPDLGGFSGELRTSGAITEHGGPSG
                     SIEGYFNAPIWYDLAGLRLSAYEELDGGYLDDVRLHKDDANRTERWGGRMTFLAQPRN
                     DWTVEVTAAAQHLRSSDTQYTAPGLGLTRVNRIAEPHVNDIGLVTARVNKSWGWGELT
                     SSTGVVRHDYGSFYDATDVQNLYTKLADTSAYSEKTRASMIVEDVFLTSRGAGRFQWL
                     AGLYASSTSEHSPTNFLATKTFAPQFPVSVYGDDRHDRIDELAAYGEASLEFAPQWTV
                     AVGGRAFTIHTRTKSRVDSELFAPRNLDRGVNFTGFAPKLSLQRELSAGDMIYAVMSA
                     GSRTGGVNSGGAQPLPPDRETYSPDRLTNYEVGLKLQLFDNRLALNSAVFYDVWKDIQ
                     TDQFRPSGIPFTTNAGDAGILGFEAEAAFRLADGLSASLNGRVDRTRITNLNPILAST
                     IVRGLPDAPAASGGAVVTYERPLTGDWLLKLVGETTYIGRSRVNFTTTFPEMGGYVRT
                     KLLVELRRKAMGVQVYLTNPTNAFSDTFAFGNPFNPSQTQQVTPQRPRTLGFTLFAAL
                     "
BASE COUNT          455 a          872 c         1025 g          443 t
ORIGIN      
        1 gcctgacggg ggccgccgag gggctgacga tcagccgctt caccgcccag aaccatctgg
       61 cgcgaatctt cgagaagacc ggcgtcaacc gccaggcggt gctggtcaag ctgatgatgc
      121 gcgcggtggg gttggacctg gacagccgcg cggacagcta gaggccaccc ctcactcgcc
      181 agagcctcac gcgccagagc ctcagttgcc agagccgggg cgcagcgccg tccagcggcg
      241 gacttccatc tgatcttcct gggtccgttg ctgccgctcg cgccgcgtgg cgcaggtctt
      301 caccggaaag cggctgccga tgggaagttc gctggtgcag accaccacgg tcgggtcggc
      361 ctcgcgccgt ttgctgatgg acggctcggg cgtgacggtc accgggctga cggtcctgcc
      421 cgcaaccggc ggcgcggccg agggcgcgga cgtgggcgcg gcctgggcga agagcacagc
      481 ggcggtgagc aaggcgctga tcatgcgaac ctccgggagt cagccagtct agggccaagc
      541 tgagcggcat cgcaatgctg gctttgtagg gggcgggcga gaatgccccg gccgaggtgt
      601 gacgtctcta gccggggcga tgtctcgcgc cagggactgg aatcccggcg gttggcgcag
      661 cccggggcgg ccacgtccga cagctacact ctagcatcgc tgtaaggtcg cgccaatccc
      721 gaggcgccga agacgtccgg acaggccgat cgacgcggcc ctgaacgcgt atttgcgtca
      781 gggccgcgct cggccgacac agcgcgcatt gggctatgac acgcggcgtt gcctttgacc
      841 gacatgcttc aggggagcgt gaaggtcgca gctgagacgt tacggccaag gcgcatccct
      901 aggtcgtccc tcaaatattc tagagggccg cgaacagggt gaagccgagg gtgcgcggcc
      961 gctgcggcgt gacctgctga gtctggctcg ggttgaaggg gtttccgaag gcgaaggtgt
     1021 cgctgaaggc gttcgtcgga ttggtcagat agacctgcac gcccatggcc ttgcgccgaa
     1081 gctcgaccag gagcttggtg cggacatagc cgcccatctc cgggaaggtg gtggtgaaat
     1141 tcacccgcga acggccgatg taggtggtct ccccgaccaa cttcagcagc cagtctccgg
     1201 taaggggccg ctcataggtc accaccgcgc cccccgaagc ggccggcgcg tcgggcagac
     1261 ccctgacgat cgtcgaggcc aggatcggat tgaggttggt gatccgggtg cggtcgacgc
     1321 gtccgttgag gcttgctgac aggccgtcgg ccagccggaa cgccgcctcg gcctcgaagc
     1381 ccagaatccc cgcgtcgccg gcgttggtgg tgaagggaat gcccgagggg cggaactggt
     1441 cggtctggat gtccttccac acgtcgtaga ataccgccga gttcagggcc aagcggttgt
     1501 cgaagagctg cagcttgagg cccacctcat agttagtcag ccggtcgggc gagtaggtct
     1561 cgcgatccgg cgggaggggc tgcgcgccgc ccgaattgac gcccccagtc cgggagcccg
     1621 ccgacatgac agcatagatc atgtcgccgg ccgagagttc gcgctgtagc gacagcttgg
     1681 gcgcaaaacc ggtgaagttg acgccgcgat cgaggttccg cggcgcgaag agttcggagt
     1741 cgacccgcga cttggtccgg gtgtggatgg tgaaggcgcg cccgcccacg gcaacggtcc
     1801 actgcggcgc gaactccaga gaggcctcgc cataggcggc gagctcgtcg atccggtcat
     1861 gccggtcgtc gccgtagacc gagacgggga actgtggcgc gaacgtcttg gtggccagga
     1921 aattggtcgg cgagtgctcg gaagtggagg acgcgtagag ccccgccagc cattggaaac
     1981 gcccggcgcc gcgcgaggtc aggaagacat cctcgacgat catgctggcc cgggtcttct
     2041 ccgaataggc ggaggtgtcg gcgagcttgg tgtagaggtt ctggacgtcg gtggcgtcat
     2101 agaagctgcc gtagtcgtgc cgcacgacgc cggtcgagga ggtgagctcg ccccagcccc
     2161 aggacttgtt cacccgcgcg gtcaccaggc caatgtcgtt gacgtgcggc tcggcgatcc
     2221 tgttgacgcg ggtcaggccg agaccaggcg cggtatactg ggtgtcgctg gagcgcaggt
     2281 gctgggccgc ggcggtcacc tcgacagtcc agtcgttgcg gggctgggcc aggaaggtca
     2341 tccgcccgcc ccaccgctcg gtgcggttgg cgtcgtcctt gtgcaagcgg acatcgtcga
     2401 ggtatccgcc gtccagctcc tcgtaggccg agagccgcag gcccgccaga tcgtaccaga
     2461 tgggcgcgtt gaaatagccc tcgatggacc cgctggggcc gccatgctcg gtgatggcgc
     2521 ccgaggtgcg cagctcgccg gagaacccgc ccaggtcggg cttgcgcagc acgatgcggt
     2581 agaggccgct gaggaagccc gcgccataga gggtgctctg cgggccgcgg gcgatctcca
     2641 cacgctccac gtcgaccagc cgcaggtcag ggtccggcgc gttgtagttg atcgggatgt
     2701 cgtcgaggta ggtggcgacc gtcgagcggg cgcgtccggt gtaggcgcca tccgagaggc
     2761 cccggagcag gagcttgtcg cgtccgggcc ccagg
//
LOCUS       DATAJL010000148         3109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28173,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000148 DATAJL010000000
VERSION     DATAJL010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3109
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28173"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1281)
                     /gene="istA"
                     /locus_tag="VHN39_02760"
     CDS             complement(<1..1281)
                     /gene="istA"
                     /locus_tag="VHN39_02760"
                     /inference="COORDINATES: protein motif:HMM:NF033546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HEX2815286.1"
                     /translation="MSNEGGWKTRADLEHQIMRLIRRGLSQRQISRALGVTRGLVKRV
                     VQGSSRAAAAPHTALPAIVTAPAATPRASKLDAHEGRIKELLAEFPSITARRVYEELR
                     AGGYEGRYSIVKERVRKLRPPKPPEPSRVRPVFGPGEMAEQDWSPYRVEFSDGTRLVH
                     AFMLSLSHSRSRYVDFFESEDLFALLEGHRRAFEHLGGVPYAIRYDNQKAVVARREGP
                     DVIYQPRLLALATHYGFDPQAVRPRKPNDKAFVERDLWDVERSFLCGRRFRDIEDMRV
                     QARRWLAEIVELRFHTKFRRRRIVEIFADEERAALRPLPTHPFDTARVVYRLCSIEGF
                     VHWEGNRYSVPYEHVTALVPVRITQDELFVYGPGLACIAHHQLFARGKGADSVIGAHR
                     PPRLDLPGASLELIRGRFLALGPAAEEFLSGLVET"
     gene            complement(1278..2162)
                     /locus_tag="VHN39_02765"
     CDS             complement(1278..2162)
                     /locus_tag="VHN39_02765"
                     /inference="COORDINATES: protein motif:HMM:NF014273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HEX2815287.1"
                     /translation="MSRSDLVPIDVRPDEIGDRLLAVRLLPPVDQEMAGSLRRFGQLS
                     PLVVFRDGDGVLEVIDGFRRRRTAVAQGFPAQLTVRTLDLDEPRALAAMFSLHRPGAG
                     LCELEQAWIVRALVREHGLPQNEVAQLLRRHPSWISRRLLLVESLSPEVQADVRLGLV
                     SATAAREVARLPRGTQQTIARIIARQGMSTRAAAKLVAATEQLQPATAEEIERLCRSA
                     QAQAPARSGPHSDAEAYTADLALLERVATRLCTRLRDRPPARLASPHAEEISGQLRAA
                     LPVWRTLMEAMQRSLEGP"
     gene            2903..>3109
                     /locus_tag="VHN39_02770"
     CDS             2903..>3109
                     /locus_tag="VHN39_02770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815288.1"
                     /translation="MVVDARFAVLVEKDGHTAPVYLHGLTLTRLYEDVVVPYEEDKPF
                     FVDGVPIRNRSDLKRLKIIRQDSRL"
BASE COUNT          503 a         1123 c         1007 g          476 t
ORIGIN      
        1 cgtctcgacg aggccgctga gaaattcctc agccgccgga ccgagcgcca ggaagcgccc
       61 gcggatgagc tcgagcgagg caccgggcag gtccaggcgg ggcggccggt gcgctccaat
      121 cacgctgtcg gcgcccttgc cccgggcaaa cagctggtgg tgcgcaatgc aggcgaggcc
      181 cggcccatac acgaagagct cgtcctgggt gatgcgcacc gggacgagcg cggtcacgtg
      241 ctcgtacggc acgctgtaac gattcccttc ccaatgtacg aagccctcga tcgagcaaag
      301 ccggtagacg acccgcgccg tatcgaaggg gtgcgtgggc aaaggacgca gcgccgcccg
      361 ctcctcgtcc gcgaagatct cgacgatccg acgtcggcga aacttggtgt ggaatcgcag
      421 ctcgacgatc tcggcgagcc agcgtcgcgc ctgcacgcgc atgtcctcga tgtcgcggaa
      481 ccggcgcccg cagaggaagc ttctctcgac gtcccacaga tctctttcaa cgaacgcctt
      541 gtcgttgggc ttcctggggc ggacggcctg gggatcgaag ccgtagtgcg tggcaagcgc
      601 cagcagccgc ggctggtaga tgacgtctgg gccctcgcgg cgggcgacca cggccttctg
      661 attgtcgtac cgaatggcgt acggaactcc cccgagatgc tcgaaggcgc ggcgatggcc
      721 ctccaggagc gcgaagagat cttcgctctc gaagaagtcg acatagcggc tgcggctgtg
      781 ggacaacgac agcatgaacg catgcaccag ccgcgtcccg tcggagaact ccacacggta
      841 aggcgaccag tcctgctccg ccatctcgcc tggcccgaag accggccgca cgcgcgaagg
      901 ctcgggaggc ttgggtggtc gcagcttgcg cacccgctcc ttgacgatgg agtagcggcc
      961 ttcgtacccg cccgcgcgca gctcctcgta aacacgccgg gcggtgatcg atggaaactc
     1021 cgcgagcagc tccttgatac gcccctcgtg cgcatcgagc ttcgatgccc gcggcgtcgc
     1081 cgcgggcgcg gtgacgatcg ccggcagcgc cgtgtgcggg gcggccgccg ctcgtgagct
     1141 gccctgtacc acgcgtttga ccagtccccg tgtgaccccg agcgcgcggg agatctggcg
     1201 ctgggacaaa cctcgacgta tcagccgcat gatctgatgc tcgagatccg cgcgcgtctt
     1261 ccatccgccc tcgttgctca tggtccctcc aggctccttt gcatcgcttc catcaacgtg
     1321 cgccacacgg gcagagcggc gcgcagctgg cccgagatct cctcggcgtg gggagacgcg
     1381 agccgcgcgg gtggccgatc acgaagccga gtgcaaagcc gggtggccac tcgctcgagc
     1441 agcgcgagat ctgccgtgta cgcctcggca tccgaatgtg gacctgagcg cgcaggcgcc
     1501 tgggcttgcg ccgagcggca aagtcgctcg atctcctccg ccgtcgcggg ttgcaactgc
     1561 tcggtggcgg cgacgagctt ggctgccgcc cgcgtgctca tgccctgccg cgcgatgatc
     1621 cgggcgatcg tctgctgcgt gccgcgcggc aagcgagcca cctcccgcgc tgccgtcgcg
     1681 ctgaccagcc cgagccgcac gtccgcttgc acctccggcg atagcgattc caccagcaac
     1741 agccggcggc tgatccacga cgggtgccga cgaagaagct gggccacctc gttctggggc
     1801 agcccgtgct cgcgcaccag ggcgcgcacg atccacgcct gctcgagctc gcaaaggccc
     1861 gcgcccggcc ggtgcaggga gaacatcgcc gccagcgcgc gtggctcgtc caggtccaga
     1921 gtgcgcaccg tgagctgcgc tggaaatccc tgtgccaccg ccgtgcgccg ccgccgaaac
     1981 ccgtcgatca cctccagaac cccgtcgccg tcgcggaaca ccaccagcgg gctcagctgt
     2041 ccaaaccggc gcagtgatcc cgccatctcc tgatccaccg gtggtaagag ccgcacggcc
     2101 aacaggcggt cgccgatctc gtcgggccgg acatcaatcg ggactaggtc gctgcgggac
     2161 attgggtgcg accgaagctg ccagggccgg cccagcctgt ccgtctggga ttgcggccga
     2221 ggagggggga gtctcgccct ttccccggtg atttcgaggg cttgggtgcc gaactgggat
     2281 tgcgcccccc ctcaccagga gtcggccgaa aagcccaagg attaccgcag gctcactctc
     2341 catctgggat tgcaccacgt cccaggggac ttgccccagc ggggcaggcg tccgcggtgg
     2401 ctgcggcttc tccgccgacg tcgcggccgt ccaccgccgc cccacgaagt agtcgggatt
     2461 tcgccgtcgc caattcgcct gcgtgcgctg ccgacgctgc tcctgacatg cagccgccgg
     2521 gcatgcgtac tgccgcgccc ccacccgggc gtcgggctga aaccacacct ttcagaacga
     2581 gcacggccgc ttcgcagtca caccacccac gctgcctcgg cgggccctct cgccgccgcc
     2641 gtcagcgcgc tggccacctc gtacccgcca cggcggtcaa ccggccaact cctccgccgt
     2701 cccgatcaca gcccccgccg acaaccgccc actggctcgc caaaccgcca cgccgccgac
     2761 ctggcccacc acctcccgcc atggcggtgg cccgccaaac cgccactacc tggctcgatc
     2821 agtggccggc gctaaaggtt gtggccgcta cacggcgagt tgcttgcgct tgcgaaggtt
     2881 gcgggcgccg atttaccctc cagtggtggt cgacgcgcga tttgcggtct tggtggagaa
     2941 ggacgggcac accgctcccg tgtacctcca cggtctgacc ctcacccggc tctacgagga
     3001 cgtcgtcgtg ccctacgagg aggacaaacc cttcttcgtg gacggcgtgc caatccggaa
     3061 ccgaagcgac ctgaagaggc tgaagatcat cagacaggac tctaggctt
//
LOCUS       DATAJL010000149         2275 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28179,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000149 DATAJL010000000
VERSION     DATAJL010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28179"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(196..1401)
                     /locus_tag="VHN39_02775"
     CDS             complement(196..1401)
                     /locus_tag="VHN39_02775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2815289.1"
                     /translation="MADFGGADLEGFRTEAREWIAANFPAALKGRGNTMMREERAEPD
                     ADQEAWRIAMGDKGWGVPTWPAAYGGGGLSGGEARVLQQELNKAGAYNPIGGMGTMMF
                     GPTLLEYGTEAQKLEHIPKIARMDVQWCQGFSEPGAGSDLASLQTKCVDKGDHFEING
                     QKIWTSGAQYADWCFCLVRTDTTKKHEGISFVLFSMHQPGVEVRPIPLIAGSSPFCET
                     FFTDARAEKKDLVGPLNGGWTIAKRLLQHERSGLTGAGGGLGGGGKPLEQLAKDYVGV
                     DDKGRIADSDLRTRLVTNAINWRAFQQTAIRAMMESKGNAGPSSATSIMKNAGTQLIQ
                     ERQEMTLEIMGHQGLGWEGEDFTKDELEAVRGWLFGKAFTIFGGSQEVQSNIVSKRIL
                     GLPDLTQNH"
     gene            complement(1455..>2275)
                     /locus_tag="VHN39_02780"
     CDS             complement(1455..>2275)
                     /locus_tag="VHN39_02780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2815290.1"
                     /translation="PGAGSDLAGLQTKAVDMGDHYLVSGSKIWTSGAHLADWCFCLVR
                     TDATKKHEGISFLLIDMRSPGVEARPILLINGTTPFCETFFTDVKVPKENLMGPLNGG
                     WTIAKRLLQHERQGISGAGQLTPGAQAGAVPGPALNVLARDYVGVDEDGVLADADLRT
                     RLTKHLMEAQAFQLTGMRAAAETRSNSGPSAVSSVLKNVGSQVRQERAELAVEILGAQ
                     GLGWTGEGYSSDEIMTTRAWLRGKSGTIAGGSQEIQNNIISKRILGLPEVTQAR"
BASE COUNT          335 a          800 c          690 g          450 t
ORIGIN      
        1 atctccgcca tctcgttcca ggcggcgacg tcgtagccca gctcggcgac tgaatcgcgc
       61 atcttgcgga aggcggtgac cgggctcttt tcctgcaccc agctcttggc tgcgtcgcgc
      121 agcatgctct gttcttcgct cagaacggcc atcttggttt tcctcgtgaa attcgtgttg
      181 ttcttgaaat ggatgtcagt ggttttgggt caggtcgggc agacccagga tgcgcttgga
      241 gacgatgttc gactgcacct cctgggagcc gccgaagatc gtgaaggcct tgccgaacag
      301 ccagccgcgc acggcctcca gctcgtcctt ggtgaagtcc tcgccctccc agcccaggcc
      361 ctggtggccc atgatctcca gcgtcatttc ctgacgctcc tggatcagct gggtgccggc
      421 gttcttcatg atcgaggtgg cgctggaggg cccggcgttg cccttggact ccatcatcgc
      481 gcggatggcg gtctgctgga acgcgcgcca gttgatggcg ttggtgacca gccgcgtgcg
      541 caggtccgag tccgcgatcc ggcccttgtc gtcgacgccc acatagtcct tggccagctg
      601 ctccagcggc ttgccgccgc cgcccagccc gccgccggcc ccggtgaggc ccgaccgctc
      661 atgctgcagc agccgcttgg cgatcgtcca gccgccgttc aggggaccca ccaggtcctt
      721 cttctcggcg cgggcgtcgg tgaagaaggt ctcgcagaac ggcgaggagc cggcgatcag
      781 cggaatcggc cgaacctcga cccccggctg gtgcatgctg aagagcacaa aacttatgcc
      841 ctcgtgcttc ttcgtggtat ctgtacggac gagacagaag caccaatcgg cgtattgcgc
      901 cccgctcgtc cagatttttt gtccattgat ttcaaagtga tcgcccttgt cgacgcactt
      961 ggtctgcagg ctcgcgaggt ccgatccggc gcccggttcg gagaagccct ggcaccactg
     1021 gacgtccatc ctggcgatct tcgggatgtg ctccagcttc tgggcctcgg tgccgtattc
     1081 cagcagcgtc gggccgaaca tcatggtgcc catgccgccg atcgggttgt aggcgccggc
     1141 cttgttcagt tcctgctgca gcacgcgggc ttcgccgccc gacaggccgc cgccgccgta
     1201 ggccgcgggc caggtcggca cgccccagcc cttgtcgccc atggcgatgc gccaggcttc
     1261 ctggtcggcg tcgggctcgg cgcgttcttc ccgcatcatc gtgttcccgc ggcccttcag
     1321 cgccgccggg aagttcgccg cgatccactc gcgcgcctcc gtccggaaac cctccagatc
     1381 cgccccgcca aaatccgcca tcaaatccgc tcctgaaaat cgggtctcaa aattcgaaac
     1441 ttatcgctga tctcttagcg cgcctgcgtc acctcgggca aacccaggat gcgcttggag
     1501 atgatgttgt tctggatctc ctgcgacccg ccggcgatgg tccccgactt gccgcgcagc
     1561 caggcccgcg tggtcatgat ctcgtcggag ctatagccct cgccggtcca gcccagtccc
     1621 tgcgcgccga ggatttccac ggccagttcg gcccgctcct gacgaacctg ggagcccacg
     1681 ttcttcagca ccgacgacac tgcgctcggc ccggagttcg accgcgtctc cgccgccgcc
     1741 cgcatgccgg taagctggaa ggcctgggcc tccatcaggt gcttggtcag ccgcgtgcgc
     1801 aggtcggcgt cggccaggac cccgtcctca tccacgccca cataatcccg cgccaagacg
     1861 ttcagcgccg gccccggcac ggcgcccgcc tgcgcccccg gcgtcagttg cccggcgccc
     1921 gagataccct ggcgctcgtg ttgaaggagc cgcttggcga tggtccagcc gccgttcagc
     1981 ggccccatca ggttttcctt cggcaccttc acgtcggtga agaaggtctc gcagaagggc
     2041 gtggtcccgt tgatcagcag gatcggcctg gcctcgacgc ccgggctccg catgtcgatc
     2101 agcaggaagc tgatcccctc atgctttttc gtggcgtccg tgcgcaccag gcagaagcac
     2161 cagtctgcca gatgagctcc agaagtccat atttttgaac cacttacgag atagtggtcg
     2221 cccatgtcga cggccttggt ctgcaggccc gccaggtccg atccggcgcc cggtt
//
LOCUS       DATAJL010000150         1574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91307,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000150 DATAJL010000000
VERSION     DATAJL010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91307"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..472
                     /locus_tag="VHN39_02785"
     CDS             <1..472
                     /locus_tag="VHN39_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S1/P1 Nuclease"
                     /protein_id="HEX2815291.1"
                     /translation="FVGDGSQPLHVTVHFNGWGDFPNPGGYTTAKIHAPFESDLVQAS
                     VTEASVVANMLPPKDCHCTLQKEVGDYLAATGALVVPLYQLEKAGGLASGDPRGPAFA
                     AQRIAVGASELRDLIVEAWQVSATQTLGYKPNAVSVADVVAGKADPYAMLYGID"
     gene            472..933
                     /locus_tag="VHN39_02790"
     CDS             472..933
                     /locus_tag="VHN39_02790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX2815292.1"
                     /translation="MSVPQFGDPDPGRAAPDRPAAFVIVPRDGRIAVVRVTFPTGGGR
                     LDLPGGGLDSGETPAQAAVRECGEEAGLRIAVGEPLTRADHYFVNMEGETNNTRGTFF
                     AATLLTEAPELKTEDDHALEWMTPQEALVALDRESHVWAVAAWLRRLRGAA"
     gene            968..>1574
                     /locus_tag="VHN39_02795"
     CDS             968..>1574
                     /locus_tag="VHN39_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrofolate dehydrogenase/cyclohydrolase
                     catalytic domain-containing protein"
                     /protein_id="HEX2815293.1"
                     /translation="MAESPPAKLIDGKIYAERLRAQVADEVAALKGSHGIQPGLAVVL
                     VGDDPASQIYVRSKGEHSLAVGMHSVTHRLPEDTTQEQLLRLVGELNDDPLIHGILVQ
                     LPLPKHLDERAVLKILNPEKDVDGLTMISAGRLASGLPGLYPCTPMGCLILLRETLGD
                     LAGKRAVVVGRSMLVGRPVAQLLLQADCTVTIAHSRSQDLPA"
BASE COUNT          243 a          563 c          536 g          232 t
ORIGIN      
        1 tttcgtgggc gacggcagtc agccgctgca tgtgaccgtc cacttcaacg gctggggcga
       61 tttcccgaac cccggcggct acacgaccgc caagatccac gcccccttcg agagcgacct
      121 cgtccaggcc agcgtcaccg aggcaagcgt ggtggcgaat atgctgccgc ccaaggactg
      181 ccactgcact ctgcagaagg aggtcggcga ctatctcgcc gccacgggcg ccctggtggt
      241 cccgctgtat cagctggaga aggccggcgg cctcgcatcc ggggatccgc ggggcccggc
      301 gttcgcggcg cagcggatcg cggtgggcgc ctcggagctc cgcgatctga tcgtcgaggc
      361 ctggcaggtc agcgccaccc agaccctggg atacaagccc aacgccgtct ccgtggccga
      421 tgtcgtcgcc ggcaaggccg atccctacgc gatgctctac ggcatcgact gatgtccgtc
      481 ccgcagttcg gtgatccaga cccgggccgt gctgcccccg accgtcctgc ggccttcgtg
      541 atcgtcccgc gggacggcag gatcgcggtc gtccgcgtga cctttcccac cggcggcggc
      601 cgcctggacc tgcccggcgg cggcctcgac tccggtgaga cacccgccca ggcggccgtg
      661 cgggaatgcg gcgaggaggc gggcttgcgg atcgccgtgg gcgagccgct cacccgagcc
      721 gaccactact tcgtcaacat ggagggtgag accaacaaca cccgcgggac cttcttcgcc
      781 gcgaccctcc tgaccgaggc gccggagctg aagaccgagg acgatcacgc cctggaatgg
      841 atgacgcccc aggaggcgct ggtcgctctg gaccgcgagt cccacgtctg ggccgtggcc
      901 gcgtggctgc gccgtttgcg cggggcagcc tgacgggcta gtcgaggccg caagttcagg
      961 agggcccatg gcagagtctc cccccgccaa gctgatcgac ggcaagatct acgccgagcg
     1021 gctccgtgcg caggtggccg atgaggtggc ggcgctgaag ggcagccacg ggattcagcc
     1081 cggcctggcg gtcgtgctgg tgggcgacga ccccgccagc cagatctatg tccgctccaa
     1141 gggcgagcat tccctggccg tggggatgca ttcggtcacg caccggctgc cggaagacac
     1201 cacccaggag cagctcctgc gcctggtcgg cgaactcaac gacgacccgt tgatccacgg
     1261 catcctggtc cagcttccgc tgcccaaaca cctcgacgaa cgggccgtgc tgaagatcct
     1321 gaacccggaa aaggacgtcg acggcctgac catgatcagc gccggccgtc tcgcgagcgg
     1381 cctgccgggg ctctatccct gcaccccgat gggctgcctg atcctcctgc gcgagaccct
     1441 cggcgacctc gccggcaagc gcgcggtggt ggtgggacgc tcgatgctgg tcggccgtcc
     1501 ggtggcgcag ctgctgctgc aggccgactg cacggtgacg attgcccact cgcgcagcca
     1561 ggacctgcca gcca
//
LOCUS       DATAJL010000151         4224 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_65494,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000151 DATAJL010000000
VERSION     DATAJL010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4224
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65494"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..347)
                     /locus_tag="VHN39_02800"
     CDS             complement(<1..347)
                     /locus_tag="VHN39_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815294.1"
                     /translation="MTWQIGASHLLGSAVSQLFGGPISNLWPIFVTPCLAALVSDRTA
                     RLLPRTPDAWVLAAMLILAPAWVAQGVLNRALSNLDVVRTWRGVLHFWITPGAASCLI
                     AYPIVRAVLRQREV"
     gene            complement(344..763)
                     /locus_tag="VHN39_02805"
     CDS             complement(344..763)
                     /locus_tag="VHN39_02805"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HEX2815295.1"
                     /translation="MAEVFHPSRSGASAVLGSLEGPIMEAIWSGDRPLAVSDVHQVLT
                     DAGRPISYSAVKAVLNNLADKGRLDKTRAGKATYFAAATTREAFEAAVVSSVVNSLKR
                     NYGAAVIAQLVDELAVDQETLAEFERVIAQRRSELKS"
     gene            complement(849..2036)
                     /gene="carA"
                     /locus_tag="VHN39_02810"
     CDS             complement(849..2036)
                     /gene="carA"
                     /locus_tag="VHN39_02810"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEX2815296.1"
                     /translation="MSRDLLPGCTGVLALADGTILQGFGVGAVGEAVGEVCFNTAMTG
                     YQEILTDPSYMAQIVAFTFPHVGNTGTTAEDLEQMSGSAVTAARGAIFRDLPTPPANW
                     RADCDLATWMTRRGVVGLAGVDTRALTRSIREHGMPHAVIAHSPEGKFDLDGLVAQAK
                     AWSGLEGLDLAKDASCLQPFVYDEGLWSWPEGYAKPTLLKNGTPRYEVVVVDYGVKRN
                     ILRALTSVGARATVVPASTSAEDILARKPDGVLLSNGPGDPAATGVYAVPEIRKLLAS
                     GTPVFGICLGHQMLSIAVGAKTVKMEQGHHGANHPVKDLTTGKVEIVSMNHGFTVDRA
                     SLPEPVMETHVSLFDGTNAGIALKDRPVFSVQHHPEASPGPTDSLYLFQRFAGLMDAA
                     KAV"
     gene            2138..2578
                     /locus_tag="VHN39_02815"
     CDS             2138..2578
                     /locus_tag="VHN39_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HEX2815297.1"
                     /translation="MTEAYIDPDRQAWEVFKSLPRDQPIHMLNLIRLRDRADYPPDHP
                     DHGKDISGREAYREYGRTIAPHLARLKSRQVWAGAPQVMVTGPGSEAWNLAFIVEYPG
                     SQAFIDMVRDPDYRANVVPHRTAAVADSRLLRLAPLEAGDKLGD"
     gene            2641..2886
                     /locus_tag="VHN39_02820"
     CDS             2641..2886
                     /locus_tag="VHN39_02820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1272 domain-containing protein"
                     /protein_id="HEX2815298.1"
                     /translation="MLILRPNCECCDRDLAPESPDARICTFECTFCAECAETRLGGVC
                     PNCGGNFSARPIRPGALLAKYPASTERVVGAHAACAA"
     gene            complement(2883..3962)
                     /locus_tag="VHN39_02825"
     CDS             complement(2883..3962)
                     /locus_tag="VHN39_02825"
                     /inference="COORDINATES: protein motif:HMM:NF024267.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2815299.1"
                     /translation="MAAAQADAKRARERLRDAIEAIPEGVVFLDAEGRYILWNRRYAE
                     IYHRSADLFTTGARLTDVLREGVRRGDYPAAIGREGAWLAEREAMLTAGTGARHEQQL
                     ADGRWLMIEDRRTSEGGVIGLRVDITELKRQAEALEQALARAEAANRAKGAFLADMSH
                     ALRTPLNGVAGLAQALEGTSLDAAQAALVTDIRASAAELERLVHGLLDYGETDRRTLE
                     PPAAETKAARPTSLRVLVADDNPTNRKVIELMLTAAGAQATCVEDGQAAVEAWAAGAF
                     DVVLMDLRMPVMDGLAAITAIRAAEAGSARRRTPVLVLSANTGPEDRRASAAVGADGH
                     IGKPIRADELIEALAAATGAEAATG"
     gene            complement(4003..>4224)
                     /locus_tag="VHN39_02830"
     CDS             complement(4003..>4224)
                     /locus_tag="VHN39_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815300.1"
                     /translation="GIEADRRDAHGKAHSSARPAFEVCSNRVAGAQSRGAGLPCGLQG
                     CSAALAVMELWKMGRALSRGEGDGERRFG"
BASE COUNT          648 a         1501 c         1430 g          645 t
ORIGIN      
        1 acctcgcgct ggcgcaggac cgcacgcacg atcgggtagg cgatcaggca ggaagcggct
       61 cccggcgtga tccagaaatg gagcaccccc cgccaggtcc tcaccacatc aaggttcgat
      121 agcgccctgt tgagcacgcc ctgggccacc caggcgggcg cgaggatcag catcgccgcc
      181 agaacccagg cgtcgggcgt ccgcggcagc aggcgcgcgg tccggtcact gaccaaggcg
      241 gcgaggcagg gcgtcacaaa gattggccat aggttggaaa tcgggccgcc gaacaattgg
      301 gagacagcgc ttccaagcaa gtgcgaggcg ccgatctgcc aagtcacgac tttagctccg
      361 aacggcgttg cgcaatcacc cgctcgaatt cggccagcgt ttcctgatcc accgccagct
      421 catcgaccag ctgggcgatc accgcggcgc catagttgcg cttcagggag ttgacgaccg
      481 acgacaccac cgccgcctcg aaggcttcgc gggtcgtggc cgcggcgaaa taggtggcct
      541 tgcccgcacg ggtcttgtcg aggcggccct tgtcggcgag gttgttgagc accgccttga
      601 ccgccgaata ggagatcggc cgtccggcgt cggtcaggac ctgatgcaca tcggagaccg
      661 ccagtgggcg gtcgccgctc cagatcgcct ccatgatcgg accctcaagc gagcccagca
      721 ccgccgaggc gccgctgcgc gagggatgga agacctccgc catgatcatc tccgggcgct
      781 cgcggccgcg cgacggcgca gccctgtggc cacctgctaa tgaccttagc gcgttgatcg
      841 aaggacgact agacggcctt ggcggcgtcc ataagaccgg cgaagcgctg gaacagataa
      901 aggctgtcgg tggggccagg cgaggcttcc gggtggtgtt ggacggagaa caccgggcgg
      961 tccttcagcg cgatgccggc gttggtgcca tcgaacagcg atacgtgggt ctccatcacc
     1021 ggctcgggga ggctcgcgcg gtctacggtg aagccgtggt tcatggagac gatctccacc
     1081 ttgccggtgg tcaggtcctt caccggatgg ttcgcgccgt ggtggccctg ttccatcttc
     1141 acggtcttcg cccccacggc gatcgacagc atctggtggc cgaggcagat gccgaacacc
     1201 ggtgtcccgc tcgccaaaag cttccggatt tccggcacgg cgtagacgcc ggtcgccgcc
     1261 gggtcgccgg ggccattgga cagcaggacc ccgtcgggtt ttctcgccag gatatcctcg
     1321 gcgctggttg aggccggcac cacggtcgcc cgcgcgccga cgctggtgag ggcccgcagg
     1381 atgttgcgct tcacgccata gtcgacgacc accacctcgt acctgggcgt cccattcttg
     1441 aggagagtgg gcttggcgta gccctcgggc caggaccaaa gcccctcgtc atagacgaag
     1501 ggctgcaggc aggaggcgtc cttggcgagg tccaggccct cgagccccga ccaggccttg
     1561 gcctgggcga cgaggccgtc gaggtcgaac ttcccctccg gcgaatgggc gatcaccgcg
     1621 tgtggcatgc cgtgctcgcg gatcgagcgg gtcagcgcgc gggtatcgac gccggccagg
     1681 cccacgaccc cgcgccgggt catccaggtc gccaggtcgc agtcggcccg ccagttggcg
     1741 ggcggggtcg gcaggtcgcg gaagatcgcg cctcgcgccg ccgtcacggc cgaacccgac
     1801 atctgctcca ggtcctcggc ggtggtcccg gtattgccca cgtgcgggaa ggtgaaggcc
     1861 acgatctgcg ccatgtagga ggggtcggtg aggatctcct ggtacccggt catggcggtg
     1921 ttgaagcaca cctcgcccac cgcctcaccc accgcgccga ccccgaatcc ctgaaggatg
     1981 gtcccgtccg ccaaggccag gacgccggtg cagccgggca gcagatcacg gctcatgacg
     2041 gcgactcctt gtgggcaaac ggccgcgtaa ctagtgagtc ccgccagccc ggtcaatgtg
     2101 cgcatatcgc acgccggtga agcgaagggc gcccctcatg accgaggcct acatcgaccc
     2161 agaccgtcag gcatgggagg tcttcaaatc cttgccacgc gatcagccca tccacatgct
     2221 gaacctgatc cggttgcggg atcgcgccga ctatccgccg gatcatcccg accacggcaa
     2281 ggacatctcc ggccgcgagg cctaccgcga atatggccgg acgatcgccc cgcacctggc
     2341 gcgcctgaag agccgtcagg tctgggccgg cgcgccgcag gtgatggtca ccggccccgg
     2401 gtcggaagcc tggaacctgg ccttcatcgt cgaatatccc ggatcgcagg cgttcatcga
     2461 catggtccgc gacccagact accgcgccaa cgtggtgccg caccgcacgg ccgcggtggc
     2521 ggattcccgc ttgctgcgcc tggccccgct ggaagccggc gataagctgg gcgactagtt
     2581 ggccggaatt gacggatagt cgtcatttcg cgccgagcgc cggtctggca ggatcgccga
     2641 atgctgatcc tccgccccaa ctgcgaatgc tgcgatcgcg acctcgcgcc cgagagccct
     2701 gacgcccgca tctgcacctt cgagtgcacc ttctgcgctg agtgtgccga gacccgcctc
     2761 ggcggcgtct gccccaactg cggcggcaac ttctcggccc ggccgatccg tccgggggcg
     2821 ctgctcgcca agtacccggc gtcgaccgag cgggtggttg gcgcccacgc ggcctgcgcg
     2881 gcttagccag tcgcggcctc cgcgccggtc gccgccgcca gggcctcaat cagctcgtcc
     2941 gcacggatcg gcttgccgat gtggccgtcg gcgccgaccg cggcgctcgc ccggcgatcc
     3001 tccggcccgg tgttggccga cagcacgagg accggggttc ggcgtcgcgc tgaacctgcc
     3061 tccgcggcgc ggatggctgt gatcgccgcc aggccgtcca tcaccggcat gcgcaagtcc
     3121 atcaggacca cgtcgaacgc gccggccgcc caggcttcga cggccgcctg gccatcctcc
     3181 acgcacgtcg cctgcgcgcc ggccgccgtc agcatcagct cgatcacctt gcggttggta
     3241 gggttgtcgt cggccaccag aacccgcagt gacgtcggcc gcgcggcctt ggtttcagcg
     3301 gccgggggtt cgagcgtgcg ccggtccgtt tcgccgtagt cgagtaggcc atggaccagc
     3361 cgctccagct ccgcggccga ggcgcggatg tcggtcacca gggcggcctg ggcggcgtcc
     3421 agcgacgtcc cctccagcgc ctgggcgagg cctgcgacgc cgttcagcgg cgtgcgcagg
     3481 gcgtggctca tgtcggccag gaacgcgccc ttggcgcggt tggcggcctc ggcgcgggcc
     3541 aacgcctgtt ctagcgcctc ggcctggcgc ttcagctcgg tgatgtcgac acgcaggccg
     3601 atcaccccgc cctcggacgt cctgcggtcc tcgatcatca gccagcggcc gtcagccagc
     3661 tgctgctcgt gccgcgcccc ggtgccggcg gtcagcatgg cctcacgttc ggcgagccaa
     3721 gctccctcgc gcccgatggc ggcagggtag tcgccgcgcc gaacgccctc acgcaggacg
     3781 tcagtcagcc gggcgccggt ggtgaagagg tcggcggagc ggtggtagat ctccgcatag
     3841 cgccggttcc acaggatgta gcgcccctcg gcgtccagga acaccacgcc ctcggggatg
     3901 gcctcgatgg cgtcgcgcag ccgctcccgg gcccgtttcg catcggcttg agcagcggcc
     3961 acggctccgc gcgtcagccg ccccacgatc cgtcgccaga ggtcagccaa aacgccgctc
     4021 accatcgcct tcgccccgac tcaaggcccg gcccatcttc cacagctcca tgacggccaa
     4081 cgcggcggag cacccttgaa ggccgcaggg gagcccggcg ccgcgagatt gggcgccggc
     4141 gacgcggttt gagcagactt cgaacgcggg ccgggcgctg ctatgagcct tgccatgcgc
     4201 atcacgacgg tcggcctcga tgcc
//
LOCUS       DATAJL010000152         4014 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_2569,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000152 DATAJL010000000
VERSION     DATAJL010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2569"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1177
                     /locus_tag="VHN39_02835"
     CDS             <1..1177
                     /locus_tag="VHN39_02835"
                     /inference="COORDINATES: protein motif:HMM:NF028132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815301.1"
                     /translation="GTPYLVVAAPVKETIYPEFGQAWYRGPSDSRPTIVLPKLARAAG
                     VGEVLYLGPSVAEATRRGLKTYSRHDTHWTGYGAYAGYVGLMQKLHAMGITDGPRPVS
                     DFELVGGDQRTRPRDLALMLGAASFVDIDFPHIDNPKGLAKIKLTYLSDKQDWTAPQV
                     IDTGEVGKPVLLMTRDSFSNELVPMMLSHFSRIVLAHNQDGAWRPDLIERFKPNVVIL
                     EVVEHGLRVSMGDGPNPSVNAMARIDHTLGVATPSVGPVMPGLAPPDAATVAALTAAT
                     PAHCNVESWSLTPGMKGEGSLKVSGWITELGSRITSPNGTLRLQGPGVDLVAPIRVDI
                     SRPDVANVFHNPSAEHSAYVGSFLVAKMPPGTYQATVYRRSRDGWISCLAKQPVIAP"
     gene            1346..>4014
                     /locus_tag="VHN39_02840"
     CDS             1346..>4014
                     /locus_tag="VHN39_02840"
                     /inference="COORDINATES: protein motif:HMM:NF012531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase central domain-containing
                     protein"
                     /protein_id="HEX2815302.1"
                     /translation="MGFPPKQGLYDPANEHDSCGVGFVANIKGRKSHEVIQCGLQILV
                     NLDHRGAVGADPLVGDGAGCLIQIPHGLLAAWAKDEGVDLPPAGEYAVAMCFLPRDEL
                     AREMAMAQLEHFLLVEKQPLIGWRNVPIDTTGLGEAVLDQMPVIRQAIIGRGPNIRDQ
                     DAHERKLLAVRKQTQNPLRELAAKKNLPGLAELYIPSMSTRTVVYKGLLLAPQVGSFY
                     KDLTDPLAESALALVHQRFSTNTFPSWRLAHPYRFIAHNGEINTVRGNVNWMNARRRT
                     LESDLLGPDLNKMWPLIPHGQSDTACLDNALELLVAGGYPLAQAVMMLMPEAWAGNPL
                     MDARRRAFYEYHAALMEPWDGPAAVAFTDGRQIGATLDRNGLRPARFIITDQDHVIMA
                     SEVGVLDIPEERITRKWRLQPGKMLLIDMEEGRIIEDEEIKRSLSEAAPYEEWLSETQ
                     FKLEELAVAAEPETPLINDPATLLDRQQAFGYTQEDLQFFLEPMARTGEDPLGSMGFD
                     TPIAVLSRRPKLLYEYFKQNFAQVTNPPIDPIREELVMSLVSMIGPRPNLLGRQAGTH
                     KRLEVAQPILTDEDLAKIRAINELLDGAFRTATLDTTWPAAEGANGLEGALQRLCREA
                     TDCVLADMNILILSDRATGPDRVPIPAALATAAVHHHLIRQGLRMQTGLVIETGEARE
                     VHHFCVLAGYGAEAVNPYLAFQSIEALRTQNGLSQTAHEVRKNYIKAIGKGVLKVMSK
                     MGISTYQSYCGAQIFDAVGLSSALIEKYFTGTASVIEGVGLAEVAGEAVRRHRDAYGD
                     NPIYATMLDVGGQYAWRLRGETHAWTPESVSNLQHAVRGNLPGAYRTFAQSINEQSER
                     LLTLRGLMRLKRGEMSIPIEEVEPAAEIVKRFST"
BASE COUNT          702 a         1357 c         1305 g          650 t
ORIGIN      
        1 gggcacgccc tacctggtgg tcgcagcgcc tgtgaaggag acgatctacc cggagttcgg
       61 gcaggcctgg tatcgcgggc ccagcgacag tcgtcccacg atcgtccttc cgaagcttgc
      121 gagagccgct ggcgtcggcg aggtgctcta tctcggtccc agcgtcgcgg aggcgacacg
      181 gcgcggcctg aagacctaca gtcgccacga cacccattgg accggatacg gcgcctacgc
      241 cggctacgtc gggctgatgc agaagctgca cgccatgggc attaccgacg gtcctcggcc
      301 ggtgtctgat ttcgagttgg tcggcggtga ccagaggacg cgtccgcgcg atctggcgct
      361 gatgctgggc gcggccagtt tcgtcgacat cgactttccc cacatcgaca accccaaggg
      421 cctggccaag atcaaactga cctacttgag cgacaagcag gactggacgg cgcctcaggt
      481 gatcgacacg ggcgaggtcg gaaagcccgt cctgctgatg acccgcgact cgttctccaa
      541 tgagctcgtg ccgatgatgc tgtcgcactt cagccgcatc gtgctggctc acaatcagga
      601 cggcgcctgg cggccggatc tgatcgaacg gttcaagccg aatgtggtga tcctggaggt
      661 cgtcgagcac ggactgcggg tttccatggg cgacggcccg aatccgtccg tgaacgccat
      721 ggctaggatc gaccacacgc tgggcgtcgc cacgccgtct gtcggtccgg tgatgcccgg
      781 tctggcgccg cccgatgcgg ccaccgtggc cgccctgacc gccgccacgc ccgcacactg
      841 caacgtcgag agctggtcgc tcacgccagg catgaagggc gagggatcgc tgaaggtcag
      901 tggctggatc acggaactcg gctcgaggat cacctcacca aacggcacgt tgcgcctgca
      961 ggggcccggc gttgacctgg tggcgccgat ccgcgtcgac atctcgcggc cggacgtggc
     1021 gaacgtcttc cacaatccaa gcgccgaaca cagcgcctat gtggggagct tcttggtcgc
     1081 gaaaatgccg cccgggacct atcaggcgac ggtctaccgg cggtcgaggg atggctggat
     1141 cagttgcctg gccaaacaac cggtgatcgc accgtaggcg ccgcgttccg gggcattaga
     1201 aaaatcttcc acggccgcag ctttccgccc atcgacaagg ggagatcttg ccgggtaaat
     1261 gcccccgaac acgaccagcc tctcaagaac gtgaggttcg gccgcgtttt ggcgtgcgta
     1321 ttgagtgtgg gtttacgagg acgagatggg gtttcccccg aagcagggac tgtacgatcc
     1381 ggcgaacgag catgactcgt gcggcgtggg ctttgtggcc aatatcaagg gccgcaaatc
     1441 gcacgaggtg atccagtgcg gcctgcagat cctggtcaac ctcgaccacc gcggcgccgt
     1501 gggcgcggac ccgctggttg gcgatggcgc gggctgcctg atccagattc cgcacggcct
     1561 gctggcggct tgggcgaagg acgagggcgt cgatctgccg ccggccggcg aatacgccgt
     1621 ggccatgtgc ttcctgccca gggacgagct ggcgcgcgag atggccatgg cccagctcga
     1681 gcacttcctg ctggtggaaa agcaaccgct gatcggctgg cgcaacgtgc cgatagacac
     1741 gaccggcctt ggcgaggccg tgctggacca gatgccggtg atccgccagg cgatcatcgg
     1801 gcgcggcccc aacatccgcg accaggacgc ccatgagcgc aagctgctgg ctgtgcgcaa
     1861 gcagacccag aacccgctcc gtgagctagc cgccaagaag aatctgccgg gtctggccga
     1921 gctctacatc ccgtccatgt ccacccgcac ggtggtctac aagggcctgt tgctcgcgcc
     1981 ccaggtgggc tcgttctaca aggacctgac cgatcccctc gcggagtcgg cgctggcctt
     2041 ggtccaccag cggttctcca ccaacacctt cccgtcctgg cgcctggcgc acccctaccg
     2101 gttcatcgct cacaacggcg agatcaacac ggtgcgcggc aacgtgaact ggatgaacgc
     2161 gcgccggcgc acgctggaaa gcgacttgct gggccccgac ctcaacaaaa tgtggccgct
     2221 gatcccgcat gggcagtccg acaccgcctg cctcgacaac gccctggagc tgctggtggc
     2281 gggcggctat ccgctggccc aggcggtgat gatgctgatg cccgaggcct gggctggcaa
     2341 cccgctgatg gacgccaggc gccgggcttt ctacgagtat cacgccgccc tgatggagcc
     2401 gtgggacggc ccggccgccg tggccttcac cgatggccgc cagatcgggg cgacgctgga
     2461 ccgcaatggc ctgaggcccg cccgcttcat catcaccgac caggaccatg tgatcatggc
     2521 gtcggaggtc ggcgtcctcg acatccccga ggagcgcatc acccgcaagt ggcgcctgca
     2581 gcccggcaag atgctgctca tcgacatgga ggaaggccgg atcatcgagg acgaggagat
     2641 caagcggtcc ctctccgaag cggcgcccta cgaggagtgg ctctccgaga cccagttcaa
     2701 gctggaggag ctggccgtgg cggcggagcc cgagacgccg ctgatcaacg atccggcgac
     2761 cctgctcgat cgccagcagg cctttggcta cacccaggaa gacctgcagt tcttcctgga
     2821 gcccatggcc aggaccggcg aggaccccct gggctccatg ggcttcgaca cgccgatcgc
     2881 cgtgctctcg cgccggccga agctcctcta cgagtacttt aagcagaact tcgcccaggt
     2941 caccaacccg cccatcgacc cgatccgtga ggagctggtg atgagcctgg tctcgatgat
     3001 cgggcctcgg ccgaacctgc tcggccgtca ggccgggacg cacaagcgcc tggaggtcgc
     3061 ccagccgatc ctcaccgatg aggacttggc caagatccgg gcgatcaacg agctcctgga
     3121 cggcgccttc cgcaccgcca cgctcgacac cacctggccg gctgccgagg gcgccaacgg
     3181 cctggagggg gcccttcagc gcctttgccg tgaggctacc gactgcgtcc tggccgacat
     3241 gaacatcctg atcctgtcgg atcgggcgac ggggccggac cgcgtgccga tccccgcggc
     3301 gctcgccacc gcagccgtcc accaccacct gatccgtcag ggcctgcgca tgcagaccgg
     3361 tctcgtcatc gagaccggcg aggcgcgcga agtgcaccat ttctgcgtgc tggcgggcta
     3421 tggcgcggag gccgtaaacc cgtacctcgc cttccagagc atcgaggcgc tgcgcaccca
     3481 gaacggcctt tcccagaccg cccacgaggt gcgcaagaac tacatcaagg ccatcggcaa
     3541 gggcgtgctg aaggtgatgt ccaagatggg catctccacc taccagtcct attgcggcgc
     3601 ccagatcttt gacgctgttg gcctgtcgtc ggccctgatc gagaagtatt tcaccggcac
     3661 tgcctcggtg attgagggcg ttggtctggc cgaggtggcg ggcgaagccg tgcgtcgcca
     3721 ccgcgacgcc tatggcgaca acccgatcta cgcgaccatg ctcgacgtcg gcggccagta
     3781 cgcctggcgc ctgcgcggcg agacccatgc ctggacgcca gagtcggtct cgaacctgca
     3841 gcacgccgtg cgcggcaacc tgcccggcgc ctaccgaacc tttgctcaat ccatcaacga
     3901 gcagtccgag cgcctgttga ccctgcgcgg cctgatgcgg ctgaagcgcg gcgaaatgtc
     3961 gattcccatt gaggaggtcg agccggcggc cgagatcgtc aagcgcttct ccac
//
LOCUS       DATAJL010000153         2127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28272,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000153 DATAJL010000000
VERSION     DATAJL010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28272"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VHN39_02845"
     CDS             <1..479
                     /locus_tag="VHN39_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiB"
                     /protein_id="HEX2815303.1"
                     /translation="VPARHSVAAFAQALRAVGEPVFGRAASEVPMSRVLTQLFEITAL
                     YDMHLRPELVLLQKTMMTVEGVARRIQPDHDIWSAADPVVRRWMARELSPVARIKRFA
                     DEAATALKNLARLIENPPTAVAVEAPETRRGGSALLWFAAGALVAGGAFLAAMYWG"
     gene            complement(653..1159)
                     /locus_tag="VHN39_02850"
     CDS             complement(653..1159)
                     /locus_tag="VHN39_02850"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2815304.1"
                     /translation="MADPKHIQRTGEVDWAQVWRGRHPFNPASEMKLVPLGDPAGMTQ
                     LGVHLIRIPPGKESYIPHAHSVSEEFVFILEGAGEMVLDGLGHPVGPGDFVGFPIDGV
                     VHSLKSKGPGDLLYITAGRRDPIEVADMPTIGKTTIFRNGRMELFGEDRVERLTQAEW
                     MARTKIED"
     gene            complement(1177..1719)
                     /locus_tag="VHN39_02855"
     CDS             complement(1177..1719)
                     /locus_tag="VHN39_02855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815305.1"
                     /translation="MALLSACDNGPSAVSKQAAGTQMATANAPDRSYNSDRGGGGYDN
                     APKVDHRKDEVAKADDGKPVWAPSKRFSAEEGARRQFERDGEAFQAKTLDQFVKKAHA
                     FVGHPPKGTLTLTRKNGDILFYDPKDNVFAVSSKEGAPRTMFKPDDGMAYWEKQKDRE
                     ERSQTARSGRKSRYADDQGE"
BASE COUNT          335 a          717 c          681 g          394 t
ORIGIN      
        1 acgtcccggc ccgccacagc gtggccgcct tcgcccaggc gctccgcgcc gtgggcgagc
       61 cggtgttcgg ccgcgccgcc agcgaagtgc ccatgagccg ggtgctcacc cagctcttcg
      121 agatcaccgc gctttacgac atgcacctgc gccccgaact ggtgctgctg cagaagacca
      181 tgatgaccgt cgagggcgtg gcccgccgca tccagcccga ccacgacatc tggagcgcgg
      241 ccgatccggt ggtccgccgc tggatggcgc gggagctgtc gccggtcgcg cggatcaagc
      301 gcttcgccga cgaagccgcc acagcgctga agaacctcgc ccggctgatc gagaacccgc
      361 cgactgcggt cgcggtcgag gcgccggaaa cccggcgcgg aggctctgcc ttgttgtggt
      421 tcgcggcggg ggccctggtt gcgggcggcg cgttccttgc cgcgatgtac tgggggtagg
      481 gcatccctag atcctccccg taggaggagg tggatcgcgg cgcagccgcg agacggaggg
      541 ggtttccgcc gccgagtcgg cgacagacga catcccggac gccggagagg aaaccccctc
      601 agtcagcttc gctgacagct ccccctacag ggagcatcta tcgcgctcgc ccctagtcct
      661 cgatcttcgt ccgggccatc cactcggcct gggtcagccg ctcgaccctg tcctcgccga
      721 acagctccat cctgccgttc cggaagatgg tggtcttgcc gatcgtcggc atgtcggcca
      781 cctcgatcgg atctctccgg ccggcggtga tatagaggag gtcgcccggc cccttggact
      841 tcagagagtg cacgaccccg tcgatgggga agcccacgaa gtcgcccggc ccgaccggat
      901 ggcccaaccc gtccaacacc atttcgcccg cgccctccag gatgaagacg aactcctccg
      961 acacggaatg ggcgtgcggg atgtagctct ccttgccggg gggaatgcgg atcaggtgga
     1021 cgccgagttg agtcatcccc gccgggtcgc ccagagggac cagcttcatc tcggacgccg
     1081 gattgaacgg atggcggccc cgccagacct gcgcccagtc gacctcaccg gtgcgctgga
     1141 tgtgcttcgg atccgccatc gtctctcctg gaatccctat tcgccctggt cgtccgcgta
     1201 cctggacttg cggccggagc gcgccgtctg gctgcgttcc tcgcggtcct tctgcttttc
     1261 ccaataggcc atgccgtcgt ccggcttgaa catggtgcgc ggcgcgccct ccttgctcga
     1321 cacggcgaag acattgtcct tggggtcgta gaacaggatg tcaccgttct tgcgggtcag
     1381 cgtcagcgtc cccttcggcg ggtgccccac gaaggcgtgc gccttcttga cgaactgatc
     1441 gagcgtcttg gcctggaagg cctcgccgtc ccgctcgaac tggcgccggg cgccttcttc
     1501 ggccgagaag cgcttgctgg gcgcccacac gggcttgccg tcgtcggcct tggcgacctc
     1561 gtccttgcgg tggtccacct tgggggcgtt gtcgtagcca ccgccgccac gatcggaatt
     1621 gtaggatcgg tcaggcgcat tggccgtggc catctgcgtg cccgccgcct gtttgctcac
     1681 ggccgagggg ccgttgtcgc aggcgctcaa gagcgccatc gccgaaattc caagcgccag
     1741 ggacagccca gctctcacac tcgtctctct caacctagcc ataccggttt ctcccaaaca
     1801 gcagaggttg ggaacaaaga aagaacaact tgaaacagtt gtcgagtcca atttgtcgaa
     1861 tttgtcgcgc ggccccatct ggcataagtc tggcgcgcgt cgacgagtgt cccgattccg
     1921 aagttcgcaa gcgcttctgg caggctccga cgaacttcgg aatcgacgag gacactcgta
     1981 agtattggtt tctagtgtgc ttcttggatc tgaagttcgc tcggcgcttg atccatggat
     2041 agggcgaact tcagatccag cacactaggg gggcgaaggc cttggctgaa aagcgaattc
     2101 tcctgatcgt cggcggcggg atcgcgg
//
LOCUS       DATAJL010000154         1786 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104297,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000154 DATAJL010000000
VERSION     DATAJL010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104297"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..582
                     /locus_tag="VHN39_02860"
     CDS             58..582
                     /locus_tag="VHN39_02860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2815306.1"
                     /translation="MDLSSGQDERYATAAAEFGGAIERLARAYEAETDPRRDLIQDIH
                     VALWRSLGAFDGRCSLRTWVYRVAHNTAASHVQRRKRWRGERGGGLETLEHLADADDP
                     EAAVGERQALERLMAIIQQLGPPDRQVALLYLEDLDAAAIGEVTGLSAGAVATKIHRL
                     KALLARRFAEGGAK"
     gene            579..1154
                     /locus_tag="VHN39_02865"
     CDS             579..1154
                     /locus_tag="VHN39_02865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815307.1"
                     /translation="MTQPPDDHMKALWQGQETETPTMTVKAIRALARNYGEGVRGGVL
                     LGLTIVAFEAVVFGLQAWRAPNEVARAGDLIVLAGLVWFTWRIMRRWPTRLPETQASA
                     QALVAFHRVQLERQQTRYANMMITVAPMIVGLLVLVYGLRLQAPQAPLARFAPFFILL
                     CAWFVAAWFIQRRQARRLREQIAEMDDLAAP"
     gene            1212..>1786
                     /locus_tag="VHN39_02870"
     CDS             1212..>1786
                     /locus_tag="VHN39_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEX2815308.1"
                     /translation="MAVEGIRGVVETAIQRASQATGVDFSFLMKTAGRESGMNPAAKS
                     GKSSAAGLFQFVEQTWLSTLKQHGAKHGYARYAELINKGGDGRYHVAGGDAHRAVMDL
                     RLDPHAASMMAGELTSDSAAYLKGRTGRSPTAGELYAAHFLGPQGSAKLIEAANRQPG
                     ATAAQLFPDAAHANKAIFYRGGRAATVGEVYA"
BASE COUNT          280 a          624 c          608 g          274 t
ORIGIN      
        1 ctgtaagatt tccccggccc gtccgactat ctctgtcgaa tggggacggg gacgtcagtg
       61 gacctgagca gcggacagga cgagcgctac gccacggccg ccgccgagtt cggcggggcg
      121 atcgaacgtc tggcgcgcgc ctatgaggcc gagaccgatc cgcggcgcga cctgatccag
      181 gacatccacg tggcgctctg gcgcagcctg ggggccttcg acggccgctg ttcgctgcgc
      241 acctgggtct accgcgtcgc gcacaacacc gccgccagcc atgtgcagcg gcgcaagcgc
      301 tggcgcggcg agcgcggcgg gggtctcgag accctcgaac acctggccga cgccgatgat
      361 ccggaggcgg ccgtgggcga gcgccaggcg ctggaacgcc tgatggccat catccagcag
      421 ctcggcccgc ccgaccggca ggtggcgctg ctctacttgg aagacctcga cgccgccgcc
      481 atcggcgagg tcaccggcct ctccgccggc gccgtcgcca ccaagatcca ccgcctgaag
      541 gccctgctgg cccgacgctt cgcggaagga ggcgccaagt gacccaacct cccgacgatc
      601 acatgaaggc cttgtggcag ggccaggaaa cggagacgcc gaccatgacc gtgaaggcca
      661 tccgcgcgct cgcgcgcaac tacggcgagg gggtccgcgg cggggttctg ctgggcctca
      721 cgatcgtggc gttcgaggcc gtggtgttcg gtctccaagc gtggcgggcc cccaacgagg
      781 tggcgcgggc tggcgacctg atcgttctgg ccggtctagt gtggttcacc tggcggatca
      841 tgcgccggtg gccgacgcgc ttgccagaga cgcaggcgtc cgcccaggcg cttgtagcgt
      901 tccaccgcgt gcagctggag cgccagcaga cgcgctacgc caacatgatg atcacggtgg
      961 cgccgatgat cgtcggccta ctggtgctcg tctacggcct tcgcttgcaa gcgccgcagg
     1021 ctcctttggc caggtttgcg ccgttcttca tcctgctgtg cgcgtggttc gtggccgcct
     1081 ggttcatcca gcgccggcag gcccggcgcc tgcgtgagca gatcgcagaa atggacgatc
     1141 tcgcggcccc ctaggacgga tcttcatcat ggttagcgcc gcattaacca tgaaggttca
     1201 ggagtcctcg catggcagtc gagggcatcc ggggagtcgt tgagaccgcg attcagcgcg
     1261 cctcccaggc gacgggcgtc gatttctcct tcctgatgaa gaccgccggg cgcgagagcg
     1321 gcatgaatcc cgccgccaag tccggcaagt cctccgccgc cggcctcttc cagttcgtgg
     1381 agcagacctg gctctcgacg ctcaagcagc acggcgccaa gcacggctac gcccgctacg
     1441 ccgagttgat caataagggt ggcgatggcc gctatcacgt ggcgggcggc gacgcccacc
     1501 gcgcggtgat ggacctgcgg ctcgacccgc atgccgcctc aatgatggcc ggcgagctga
     1561 cctccgattc cgcggcctat ctgaagggcc gcactggccg tagccccaca gcgggcgaac
     1621 tctacgcagc ccacttcctg ggaccgcagg gctcggccaa gctgatcgaa gcggcgaaca
     1681 ggcagcccgg cgccacggcc gcccagctgt tccccgacgc ggcccatgcg aacaaggcga
     1741 tcttctatcg cggcggccgc gcggccacgg tcggcgaggt ctacgc
//
LOCUS       DATAJL010000155         4752 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_53986,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000155 DATAJL010000000
VERSION     DATAJL010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4752
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_53986"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..748
                     /locus_tag="VHN39_02875"
     CDS             <1..748
                     /locus_tag="VHN39_02875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815309.1"
                     /translation="LICGWGARLKDEALLRAAIDDASAAADRLDLAYEPLTWARAEIL
                     RGQALALWGEAAGDIDAVAAGATTLAGALDHISRDHSPLDWARTQIALAHALQSLGEA
                     SADERAYEQAVTCYDRANLVLKDAPATPLRGLAAGERAMCLARSAELTGDLAVLDTAE
                     TALKIELAALQPRRDPVAWALVQLHLARLYEARVDITGKDHGERAAAVMALDAALDVF
                     GEQGMRSLTIMASEALERLRAGPAARRTAV"
     gene            805..1479
                     /locus_tag="VHN39_02880"
     CDS             805..1479
                     /locus_tag="VHN39_02880"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2815310.1"
                     /translation="MSLKIVALIASGAAVLVGGGIAYAGIVQTQISWSEAPSVSDIAA
                     AYPARARAAGVSGTVNLTCEMGRDGHPKDCEALTEKPSGYGFGHAASKLAEKLKDEGT
                     SLTHQNIFIPVTFDAAVLKGEAMVSKPEWASLPSASDFQATFPKTENGVNQVRVVLGC
                     TVEAGGALGSCAVADETPPGQGYGAGALALASKFRLEPWSVDGAPTVGAHIKLPIRYE
                     LAPAKK"
     gene            complement(1484..2251)
                     /locus_tag="VHN39_02885"
     CDS             complement(1484..2251)
                     /locus_tag="VHN39_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2815311.1"
                     /translation="MTRIAQTLAPFVLIALLLAAWEFACRAFAVPVYFLPPPSAVANA
                     LATDWASLLRSAWNTLSMALIALLVASLAAQALALFVGLSPILERAVRPLAVVLQVTP
                     VVAIAPLVLIWAGLDHAGRAIVGLAAVVAFFPIFSGAVTGLKAADPDLERLFDLYGAT
                     RIQRLTRLRLPSAVPYLLEGHKVAAGLAVIGAVVAEFVAGSGGAQGLAWRILEAGNRL
                     QTARMFAALVVLGLLGAVLHSALEAAEKAGLRWWRGR"
     gene            complement(2248..2985)
                     /locus_tag="VHN39_02890"
     CDS             complement(2248..2985)
                     /locus_tag="VHN39_02890"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2815312.1"
                     /translation="MSVAALTEVEVDYPRGRALGPFSLSIGAGEIVTLVGPSGCGKST
                     AMRLLAGLEAPTSGDVARTPGRGETAVVFQAPTLAPWLSARANAALPLELAGVSRAEA
                     ATRADRALGRVGLTGAETARPAQLSGGMAMRVSLARALVTEPKLMLLDEPFAALDEIT
                     RRALADDVLSLWADTKPAIVFVTHNVEEAVYMASRVVVMTQGPGRTAGEVAVAGALPR
                     PAGFRTTEAFRAQVEAVSALLATGMAA"
     gene            complement(2987..3994)
                     /locus_tag="VHN39_02895"
     CDS             complement(2987..3994)
                     /locus_tag="VHN39_02895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX2815313.1"
                     /translation="MKALRPIVAALVLALAACSPARQEATKAAGPQLTVIRFATDWRA
                     EAEHGGFYEALANGEYARRGLDVKIIQGGPGVNVPQLLAAGSVDLGVGSNGFIVLNMV
                     QEGVPVKAVAAFFQKDPQVLIAHADTGVNSIADLKGHPILLGDASVTTFWLWLKAKYG
                     FTDDQVRKYTFNNGPFLADKRAAQQGYVTSEPYTIEKQAGMKPKVFLLADNGYPGYAT
                     MIMAPDALIAKNPAAVKAFVEASAKGWQDYLNGDPTPAFALIKKDNPEMTQDILDQAR
                     AKLKSYAIVDGGDAKAGIGAMTDARWKTFFDMATGAAVYPKSLDYKKGYSLQFLAAPA
                     K"
     gene            complement(4496..>4752)
                     /locus_tag="VHN39_02900"
     CDS             complement(4496..>4752)
                     /locus_tag="VHN39_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter C-terminal domain-containing
                     protein"
                     /protein_id="HEX2815314.1"
                     /translation="PKPAGKLTYKDQRRLEELDGLIAGAPARTAALEASLADPVLYSR
                     DPAAFQRLSRDLETLRTQMIAAEEEWLVLEERREALEAGR"
BASE COUNT          724 a         1616 c         1715 g          697 t
ORIGIN      
        1 cctgatctgc ggctggggcg cgcgtctgaa ggacgaggcc ctgctcaggg ccgccatcga
       61 cgacgcctcc gccgccgccg accgtctgga cctggcctat gagccgctca cctgggcccg
      121 cgccgagatc ctgcgcggcc aggccttggc gctctggggc gaagcggccg gcgacatcga
      181 cgcagtggcc gccggcgcca ccacgctcgc tggcgcgctg gaccacatca gccgcgatca
      241 cagcccgctc gactgggcgc gcacccagat cgcgctcgcc cacgccctgc agtcgctggg
      301 cgaggccagc gctgatgaac gggcctacga acaggcggtc acctgctatg accgcgccaa
      361 tctggtgctg aaggacgcgc cggcgacgcc gttgcgcggc cttgcggccg gcgaacgcgc
      421 catgtgtctg gcgcgctcgg ccgagctcac tggcgatctg gcggtgctgg acaccgccga
      481 gaccgccctg aagatcgaac tcgccgccct gcagccgcgg cgcgacccgg tggcctgggc
      541 gctcgtgcaa ctgcatctgg cgcggctcta tgaggcccgc gtcgacatca ccggcaagga
      601 tcacggcgaa cgggccgctg cggtcatggc gctggacgcc gccctcgacg tcttcggcga
      661 acaaggcatg cgctccctga ccatcatggc cagcgaggcc ctggagcggc tgcgcgccgg
      721 cccggccgcc cgtcgcaccg cagtctagct tttcaagccc gccgcgattg tgccaagctc
      781 gccccgaccc cacgggagct tgtcatgtct ttgaagatcg tcgccctgat cgcctccggc
      841 gccgctgtcc tggttggcgg aggcatcgcc tacgccggca tcgtgcagac gcagatttcg
      901 tggtccgagg cgcccagcgt ttccgacatc gccgcagcct atccggcccg cgccagggcg
      961 gccggcgtca gcggcacggt caacctgacc tgcgagatgg gccgcgacgg ccatccgaag
     1021 gattgcgaag ccttgaccga aaagccgagc ggctacggct tcggccacgc ggccagcaaa
     1081 ctcgccgaga aactgaagga cgaagggacc tcgctcaccc accagaacat cttcatcccg
     1141 gtcacctttg acgcggccgt gctgaagggc gaggccatgg tttccaaacc agagtgggcc
     1201 tccctgccgt ccgcgtcaga cttccaggcc acgttcccga agaccgagaa cggcgtgaac
     1261 caggtacgcg tggtgctggg ctgcacggtg gaagccggcg gcgccctggg gagctgcgcg
     1321 gtggccgacg agacgccgcc gggccagggc tatggcgccg gcgcgctggc gctggcctcg
     1381 aagttccggc ttgaaccctg gagcgtcgat ggcgcgccga cggtgggcgc ccacatcaaa
     1441 ctgccgatcc gctacgagct ggcgcccgcc aagaagtagg gggctagcgg ccgcgccacc
     1501 agcgcaggcc cgccttctcg gcggcctcca gggccgagtg caggaccgcg cccaagagac
     1561 ccagcacgac gagggccgcg aacatgcgcg ccgtctgcag gcggttgccg gcctcaagga
     1621 tgcgccaggc gaggccctgg gcgccgccgg agccggccac gaactcggcg accacggctc
     1681 cgatcaccgc caggcccgcg gccaccttgt gcccctccag caggtagggg acggccgagg
     1741 gcaggcgcag gcgggtcagg cgctggatgc gggtcgcgcc gtagaggtcg aagaggcgtt
     1801 cgaggtccgg gtcggcggcc ttcagcccgg tgaccgcgcc ggagaagatc gggaagaagg
     1861 ccaccacggc ggccaggccc acgatggcgc ggccggcatg gtcgagcccc gcccagatca
     1921 gcaccagggg cgcgatggcc acgaccggcg tcacctgcag gaccacggcc agcgggcgca
     1981 cagcgcgttc caggatcggg ctcaggccga cgaagagcgc cagcgcctga gccgcgaggc
     2041 tggcgaccag cagcgcgatc agcgccatgg agagcgtgtt ccatgccgag cgcagcagcg
     2101 aagcccagtc ggtcgcaagc gcgttcgcca cggcggacgg cggcggcagg aaatagaccg
     2161 gcacggcgaa ggcgcggcag gcgaactccc aggcggccag taagagcgcg atcaggacaa
     2221 agggggcgag ggtctgggcg atgcgggtca tgcggccatg cctgtcgcga ggagggcgga
     2281 gaccgcctcc acctgggcgc ggaaggcctc ggtggtgcgg aagccggcgg ggcgcggcag
     2341 ggcgccggcc acggcgactt cgccggcggt gcggccgggg ccctgggtca tcaccaccac
     2401 acgagaggcc atgtagacgg cctcctccac attgtgggtc acgaagacaa tggcgggctt
     2461 cgtgtcggcc cagagggaga gaacgtcgtc ggcgagggcg cgccgggtga tctcgtccag
     2521 ggccgcgaag ggctcgtcga gcagcatcag cttgggctcg gtgacgagcg cgcgggcgag
     2581 cgagacccgc atcgccatgc cgccggagag ctgggccgga cgggcggttt cggccccggt
     2641 caggcccaca cggcccagcg cccggtcggc gcgggtcgcg gcctcggcgc ggctcacgcc
     2701 ggccagttcc agcggcaggg cggcgttggc ccgggcggag agccagggcg ccagcgtcgg
     2761 ggcctggaag accaccgcgg tctcgccccg gcccggcgtg cgggcgacgt cgccactggt
     2821 cggcgcctca aggccggcca gcaggcgcat ggccgtggac ttgccgcagc cggacggtcc
     2881 gaccagggtc acgatctcgc ccgcgccgat gctcagcgag aatgggccga gcgcacggcc
     2941 ccgcgggtaa tcgacctcga cctcggtgag ggccgcgacg ctcatgctac ttcgccggcg
     3001 cggccaggaa ctgcaggctg tagcccttct tgtagtccag ggacttggga tagacggcgg
     3061 cgccggtggc catgtcgaag aaggtcttcc agcgcgcgtc ggtcatggcg cctatgccgg
     3121 ctttcgcgtc gccgccgtcg acgatggcgt aggatttcaa cttggcccgg gcctgatcca
     3181 ggatgtcctg ggtcatctcc ggattgtcct tcttgatgag cgcgaaggcc ggcgtggggt
     3241 cgccattcag atagtcctgc cagcctttcg ccgacgcctc gacgaaggcc ttcaccgcgg
     3301 ccgggttctt cgcgatcaga gcgtccggcg ccatgatcat ggtggcgtag ccggggtagc
     3361 cgttgtcggc gagcaggaag accttgggct tcatcccggc ctgtttctcg atggtgtagg
     3421 gctcggaggt gacatagccc tgctgggccg cgcgcttgtc ggccaggaac gggccgttgt
     3481 tgaaggtgta tttgcgcacc tgatcgtcag tgaagccgta cttggccttc agccacagcc
     3541 agaaggtggt gaccgaggcg tcgcccagca ggatcgggtg gcccttcagg tcggcgattg
     3601 agttcacgcc ggtgtcggcg tgggcgatca ggacctgcgg gtccttctgg aagaaggccg
     3661 ccacggcctt caccggcaca ccctcctgga ccatgttgag gacgatgaag ccgttggagc
     3721 cgacgccgag atcgacggag ccggcggcca ggagctgcgg cacgttcacg cccggaccgc
     3781 cctggatgat cttcacgtcc aggccgcgcc tggcgtattc gccattggcc agcgcctcgt
     3841 agaagccgcc gtgctcggcc tcggcccgcc agtcggtggc gaagcggatg acggtcagtt
     3901 ggggcccggc ggccttggtc gcctcttgcc tggccggcga gcaggccgcg agcgccagaa
     3961 caagcgcggc gacgatggga cgcaaggctt tcatggggga ccccgactga cttgccgcga
     4021 gggtagggcg ctacgcctgc actgggaaga cggggcgcgg ttggaacacg cccatagcaa
     4081 gagggcggcg ctccggttgc ccggggctcc gccctctcat ccagatccgt tgggggatct
     4141 gtaccttcaa ggtcgtcagc gactttggtt cacgggtcgc cccgctggtt ttccgtcgcg
     4201 tccggtgtct cttggaagtt tgtcccgggt cgccccggtc ctcgcctcta gaaacctcct
     4261 gctcgcctct gcttctgggt ccgccgtttc cggcctctcc gtccgcccgc gccgcagtcc
     4321 ctctcggcaa gtgaacggtg ctcccgaacc cgaaatccgg caagcggctg tttcgcggag
     4381 gatgtgactt cggcgtcaaa aaccggtgca taagcggtgg ataacctggg agcgggtccg
     4441 aattcctcaa gtcttttcaa ggcttgattc tatccacaag aaagggccga ggcggctagc
     4501 ggccggcctc cagggcctcg cggcgctcct ccaggacgag ccattcctcc tccgcggcga
     4561 tcatctgggt acggagggtt tccaggtcgc gggagaggcg ctggaaggcg gcgggatcgc
     4621 ggctgtagag caccggatcg gcgaggctcg cttcaagagc tgcggtcctg gccggcgcgc
     4681 cggcgatcag gccgtcgagc tcttcgaggc gccgctggtc cttgtaggtg agcttgccgg
     4741 cgggcttcgg ag
//
LOCUS       DATAJL010000156         2412 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41402,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000156 DATAJL010000000
VERSION     DATAJL010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41402"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..508
                     /locus_tag="VHN39_02905"
     CDS             <1..508
                     /locus_tag="VHN39_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2815315.1"
                     /translation="TDPMPLTLEGSCRCGAVRFTCESHTPQPYQRCYCSICRKTAGGG
                     GYAINLGADAKTLTIEDPHKAIGVFRAEIRDEDGRCEVSTGERNYCSRCATALWLYSP
                     EWPELVHPFASAIDTDLPVPPSRVHLMLKFKPAWVVVSQGPDDTLFDLYPEQSLEDWH
                     RSRGLWVD"
     gene            complement(505..1725)
                     /locus_tag="VHN39_02910"
     CDS             complement(505..1725)
                     /locus_tag="VHN39_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815316.1"
                     /translation="MQRLGALIVAVVLAAGWGAAAQGQRQPQEAHGYTRYELLAPGSG
                     KFRITYDITAVRPGATAFFNPIRKGSIASDESVTDLSTGLPLKFAQVSGESAKTTGLP
                     DADAASDYIRVELAHPVPADGGEARILIEKTYEDAKSYRVEGHDIVFDRGLGIKKNAV
                     VLPKGYVLVSCNYPSQVTEEADGRLRISFFNVTPGEAPLKLRATPGTLASAPTSVKGK
                     FGERAKQTRDIVYFLQPPETHAFDLYHDYTEEKAGVGRYINVVRTGSVATNPSARNLD
                     SGEAIPAVHLKGDEIAKAGIDDPEIGKVTPQSEIVVFNFKPLKPGQSIRLRMSETYTD
                     PGRYKLVGDELVFDRTFGRAENAVVLPKGWMLTNSSFPVIVTRTEDGRIRLDFNNPRP
                     DEVEALFTARRVAP"
     gene            complement(1727..>2412)
                     /locus_tag="VHN39_02915"
     CDS             complement(1727..>2412)
                     /locus_tag="VHN39_02915"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2815317.1"
                     /translation="WGNGPVRVAQKEGPGWLFAAGELAMAPSELARWDISLMTRSLLK
                     PASYDAFYAPIKLTSGRDSHYSLGLRVRDDHGRLMLGHDGGGSGFLSANIMWPAQKVA
                     VAAFTNSDWASPDDVAARVAFVVLPPTTAEARARTVFHDFQAGKIDRKLFTENGNAYL
                     TASVLADQKTGLAPLGPPRLFQLEGEQARGGFNTRTWKITTAKGVLTAVERAYPDGKL
                     EQFMISKGD"
BASE COUNT          350 a          809 c          837 g          416 t
ORIGIN      
        1 gaccgatccc atgcccctga ccctcgaagg ctcctgccgc tgcggcgccg tgcgcttcac
       61 ctgcgagagc cacacacccc agccctacca gcgctgctac tgctcgatct gccgcaagac
      121 cgcgggcggc ggcggctacg ccatcaacct gggcgcagac gccaagaccc tgacgatcga
      181 ggatccgcac aaggccatcg gcgtcttccg cgccgagatc cgcgacgagg acggacgctg
      241 cgaggtctcc accggcgaac gcaactactg ctcgcgctgc gccacagcgc tttggctcta
      301 ttccccggag tggccggagc tggtccaccc cttcgcctcg gcgatcgata cggacctgcc
      361 cgtcccgccg tcgcgggtgc atctgatgct gaagttcaag cccgcctggg tggtggtgag
      421 ccagggcccg gacgacacgc tcttcgacct ctacccagag cagtcgctgg aggactggca
      481 ccggtcccgc gggctctggg tggactaggg cgcgaccctg cgcgccgtga acagcgcctc
      541 cacctcgtcg ggccgggggt tgttgaagtc gagccggatg cggccgtcct cggtgcgcgt
      601 gacgatcacc gggaaggacg agttggtcag catccagccc ttaggcagga ccacggcgtt
      661 ctcggcgcgg ccgaaggtgc ggtcgaagac cagctcgtcg cccaccagct tgtagcggcc
      721 ggggtcggtg taggtctcgc tcatccgcag gcggatcgac tggccgggct tcagcggctt
      781 gaagttgaag accacgatct cgctctgcgg cgtcaccttg ccgatctcgg gatcgtcgat
      841 gccggccttg gcgatctcgt cacccttcag gtggacggcg ggaatggcct cgccgctgtc
      901 gaggttgcgg gccgacggat tggtcgccac cgagccggtg cgcaccacat tgatgtagcg
      961 gccgaccccg gccttttctt cggtgtagtc gtgatagagg tcgaaggcgt gggtctccgg
     1021 cggttgcagg aaatagacga tgtcgcgggt ctgtttggcc cgctcgccga acttgccctt
     1081 cacgctggtg ggggctgagg cgagcgtccc cggcgtggcc cgcagcttca ggggcgcctc
     1141 gcccggggtg acgttgaaga agctgatccg caggcgcccg tcggcctcct cagtcacctg
     1201 ggacgggtag ttgcagctca ccagtacata gcccttgggc aggaccacgg cgttcttctt
     1261 gatgcccagg ccccggtcga agacgatgtc gtggccctcg acgcgatagc tcttggcgtc
     1321 ctcataggtc ttctcgatca gaatgcgcgc ctcgccgccg tcggcgggaa ccggatgggc
     1381 cagctccacg cgaatgtagt cggaggcggc gtcggcgtcc ggcaggccgg tggtcttggc
     1441 gctctcaccg gagacctggg cgaatttcag cggcaggccg gtggacaggt cggtgacgct
     1501 ttcgtcggag gcgatggagc ccttgcggat cggattgaag aaggccgtgg cgccgggcct
     1561 gaccgcggtg atgtcatagg tgatccggaa cttgcccgag cccggcgcca gcagctcata
     1621 gcgggtgtag ccatgggcct cctgcggctg gcgttggcct tgcgccgccg cgccccagcc
     1681 cgccgccagc accacggcca cgatcagcgc gcccagtctc tgcatgtcag tcgcccttcg
     1741 agatcatgaa ctgttcgagc ttaccgtccg gataggcccg ctcgacagcc gtgagcacgc
     1801 ccttggcggt ggtgatcttc caggtgcggg tgttgaagcc gccccgcgcc tgctcgccct
     1861 caagctggaa gagccggggc gggcccagtg gcgcgagccc cgtcttctgg tccgccagca
     1921 ccgacgcggt gagataggcg ttgccgttct cggtgaagag cttgcggtcg atcttcccgg
     1981 cctggaagtc gtggaacacg gtccgcgcgc gggcctctgc ggtcgtgggc ggcaggacca
     2041 cgaaggccac gcgcgcggcg acgtcatcgg ggctcgccca gtcgctgttg gtgaaggcgg
     2101 cgaccgccac cttctgggcc ggccacatga tgttggccga caggaagccg gagccgccgc
     2161 catcgtggcc gagcatcagc ctgccgtggt catcgcgcac gcgcagtccc aggctgtaat
     2221 ggctatcgcg tccgctcgtc agcttgatgg gcgcgtagaa ggcgtcatag gaggcgggct
     2281 tgaggaggct cctcgtcatc aggctgatgt cccagcgggc gagttcgctg ggcgccatgg
     2341 cgagctcgcc ggccgcgaac agccagccgg ggccttcctt ctgcgcgacc cggacggggc
     2401 cgtttcccca gc
//
LOCUS       DATAJL010000157         2003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54018,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000157 DATAJL010000000
VERSION     DATAJL010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2003
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54018"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..667
                     /gene="rutB"
                     /locus_tag="VHN39_02920"
     CDS             <1..667
                     /gene="rutB"
                     /locus_tag="VHN39_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyrimidine utilization protein B"
                     /protein_id="HEX2815318.1"
                     /translation="SLPINPSETALIVVDMQNAYASPGGYLDLAGFDIEGSAAVIDRI
                     ALAVEAARKAGVTVVFFQNGWDADYVEAGGPGSPNWWKSNALKTMRDRPELEGTLLAK
                     GTWDYALVDQLKPQPGDIVIPKPRYSAFFNTALDSMLRARNIKTLAFCGIATNVCVES
                     TLRDGFFLEYFGVLLEDATHQAGPAFLQEASVYNVEKFFGWVSNTADFCGTIGQTPPV
                     DQL"
     gene            679..1068
                     /gene="rutC"
                     /locus_tag="VHN39_02925"
     CDS             679..1068
                     /gene="rutC"
                     /locus_tag="VHN39_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein C"
                     /protein_id="HEX2815319.1"
                     /translation="MPKTIVLPPGTQKPIAPFSPGTLADGVVYVSGTLAFDKDNNVNH
                     VGDCEAQTRQVLETIKSVIETAGGTMDDVTMNHIFVKDWADYGAVNKVYAEYFPGDKP
                     ARFCIQCGLVKPDFLVEIATIAHIGKR"
     gene            1071..1670
                     /locus_tag="VHN39_02930"
     CDS             1071..1670
                     /locus_tag="VHN39_02930"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX2815320.1"
                     /translation="MSHSANGRTADHDIDPIFLGRWSPRAFTGEAMPDDLLMSLFEAA
                     RWAPSASNIQPWRFVYAHRGTPQWQPLFDALMDMNQAWVGQASVLAYVLSDRFRRKPG
                     AEPTPNRSHSFDAGAAWAYLALQAHHLGWAAHGMGGFHVDKAHEATGAAEADYRIEAA
                     IAIGRPTDARVLPEAYRAREVPSGREPVESFVFEGRLGA"
BASE COUNT          341 a          712 c          629 g          321 t
ORIGIN      
        1 gtcgctcccg atcaatccca gcgagaccgc gctgatcgtg gtcgacatgc agaatgccta
       61 tgcctcgccc ggcggctatc tcgacctggc cggcttcgac atcgagggct cggccgcggt
      121 catcgaccgc atcgcgctcg cggtcgaggc ggcgcgcaag gccggcgtca ccgtggtctt
      181 cttccagaac ggctgggatg cggactacgt cgaggccggc ggcccgggct cgcccaactg
      241 gtggaagtcc aacgcgctga agaccatgcg cgaccggccg gagctggagg ggaccctgct
      301 cgccaagggg acctgggact acgcgctcgt cgaccagctg aagccccagc ccggcgacat
      361 cgtcatcccc aagccgcgct actcggcctt cttcaacacc gcgctcgatt ccatgctccg
      421 cgcccggaac atcaagaccc tggccttctg cggcatcgcc accaatgtct gtgtggagag
      481 caccctgcgg gacggcttct tcctggagta tttcggcgtc ctgctggaag acgccaccca
      541 tcaggcgggc ccggccttcc tgcaggaagc ctccgtctac aacgtcgaga agttcttcgg
      601 ctgggtgtcc aataccgccg acttctgcgg gacgatcggc cagaccccgc ccgtcgacca
      661 actctgagag gatccaccat gcccaagacc atcgtcctgc cgcccgggac ccagaagccg
      721 atcgccccct tctcgcccgg aaccctggcc gacggggtgg tctacgtctc gggaaccctg
      781 gccttcgaca aggacaacaa cgtcaaccac gtgggcgact gcgaggccca gacgcgccag
      841 gtgctggaga ccatcaagtc ggtcattgag accgccggcg ggaccatgga cgacgtcacc
      901 atgaaccaca tcttcgtcaa ggactgggcc gactacggcg ccgtcaacaa ggtctatgcg
      961 gagtatttcc cgggcgacaa gccggcgcgg ttctgcatcc agtgcggcct ggtgaagccc
     1021 gacttcctgg tcgagatcgc caccatcgcc cacatcggga agcgctgagc ttgagccatt
     1081 ccgcgaacgg acgaaccgcc gaccacgaca tcgatccgat cttcctgggc cgctggtcgc
     1141 cgcgcgcctt caccggcgag gccatgccgg acgacctgct gatgagcctg ttcgaggcgg
     1201 ctcgctgggc gccctcggcc agcaatatcc agccctggcg cttcgtctac gcccatcgcg
     1261 ggacgccgca gtggcagccc ctgttcgacg ccctgatgga catgaaccag gcctgggtcg
     1321 gacaagcctc ggtgctggcc tacgtcctct ccgaccgctt ccgccgcaaa cccggcgcgg
     1381 agccgacgcc caaccgcagc cacagcttcg acgccggcgc cgcctgggcc tacctggcgc
     1441 tccaggccca ccacctcggc tgggccgccc acggcatggg cggcttccat gtggacaagg
     1501 cccacgaggc caccggcgca gcggaggccg actaccgcat cgaagccgcc atcgcgatcg
     1561 gccggccaac ggacgccaga gtgctgccgg aagcctaccg ggcgcgggag gtcccgagcg
     1621 gtcgtgagcc ggtggagagc tttgtgtttg agggacggct gggggcctag gtctcttatc
     1681 caagcccaga agcggccttt gcgcgcgtca gctatggggg gttagtggac attcgcccag
     1741 gccgtggcag cgcctagaag tcccagctgt tcggcgtgta ggaccatccg atgccggtca
     1801 cgcatccatc tcggaggaag agcgtgacga caccgtttcc gcgcgcctca tcgcgatagc
     1861 tcactctggc ttcgccagac attaccgggc cgccgggaga gtgacccccg cctctttcca
     1921 attgttcggg cgttcccgtt tgccagagaa cgcaagctgg cgaaaactgt cggcgaattg
     1981 cggcgtcggc gtcggcccat ggc
//
LOCUS       DATAJL010000158         2373 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117114,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000158 DATAJL010000000
VERSION     DATAJL010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2373)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2373)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2373
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117114"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(24..>2373)
                     /locus_tag="VHN39_02935"
     CDS             complement(24..>2373)
                     /locus_tag="VHN39_02935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815321.1"
                     /translation="YMLVNLAVGGAGSWPGAAVGESGHLLVDYVRAYASPTATAQNTP
                     PRLTGLSANQKGTDAALVAPFGAIAVGDFDNSSAIRVGITLTSGGAATDTDGILSGPG
                     LTKTGIGMYSLAATSSVSLGSELRALAFTSTAHQVAPGRGVATSFGLTVAMGSVTSST
                     STILTITAVDSGPTVTQVAPANNVENSQSVVIGSVAPGLAGDTLRLTRGGGSLGTVSL
                     GIADLNGVRQVLYSAPAHILATAIDSVSYSITDQYNDAAATGSANVQLDRGAVVTPAA
                     PVVLAAGQSAVVDTITAGLAGDVVTLTQTVAGLGAFSLVQTVDGGTAQPNQYNVVYTE
                     TGAFTSSRRDTATFQVADRIGGKGVGYTPGIRLDAGATIVSSLTGVKVAPGKTVIIGS
                     VTPGFAGDTLTITGGDGVQGTFSLGLPTASGLQKILYTAPGVVASNGAVSLSYTISDQ
                     TGANPVSGTSSAILTNPLLTITKQPATVVEKGQSTFIGKVNPGSPGDTLTLTQTGTAF
                     GTLSLVTINSVVEIQYTAASSIASSRTDSAGYIISDGHGGSVSGAVAVTLDGGPKLSL
                     ATPGVVVQGQSTVIGTVSPGLSGDVETLTQTGSSQGTVTLSGGKIIYTAAANITATGT
                     DAVSYIIADQHQDATVSGSASVKLLGAASISGSTAITSTAAGNFIDLIGGSPTMTFIG
                     ANAAVLLEGSVSPTIIDHSRGLTVIVGSSQVSATIQNFAADGQGVIDLLHGIGGYTTA
                     AAAQGALTSDRHGGSQLSLGSGFIDIAGVAPASVAASHFKIG"
BASE COUNT          392 a          746 c          824 g          411 t
ORIGIN      
        1 ggttgaccac cgggggatgg tgattaaccg atcttgaagt gagaggcggc gaccgaggcc
       61 ggggccacgc cggcgatgtc gatgaagccg ctgcccaagg acaattgtga gccgccatgc
      121 cggtcggacg tcagcgcacc ctgcgctgcc gcggccgtgg tgtagccacc gataccgtgc
      181 aacagatcaa tcacgccctg gccgtccgcc gcgaagttct ggatggtggc agacacctgg
      241 ctcgacccga caatgacggt gaggcccctg gagtgatcga tgatcgttgg gctgaccgag
      301 ccctccagca gaacggccgc attggcgccg ataaaggtca tcgtgggcga gccgccgatc
      361 agatcgatga aatttccggc ggccgtgctg gtgatcgctg tgctgccgct gatcgacgcg
      421 gcgcccagca gcttcaccga agcagagcct gacacagttg cgtcctgatg ctggtcggcg
      481 atgatgtacg acacagcgtc ggttccggtg gcggtgatgt tcgccgcggc ggtgtagatg
      541 atcttgccgc cgctcagcgt cacggtccct tggctggagc cggtctgcgt cagcgtctcc
      601 acgtcgccgg agaggccggg gctcaccgtg ccgatcaccg tggactggcc ctgcaccacg
      661 acacccggcg tggcgagcga cagcttcggg ccgccgtcaa gggtgacggc aaccgcgccg
      721 ctgaccgatc cgccgtgtcc gtccgatatg atatatccgg cgctgtcggt tcggctcgat
      781 gcgatggaac ttgccgcggt gtattggatc tcaaccacgc tattgatcgt gacgaggctg
      841 agggtaccaa acgccgtgcc ggtctgcgtc agggtcaggg tatcgccggg cgagccgggg
      901 ttgaccttgc caataaaagt ggactgcccc ttctcgacca ccgtcgcggg ctgtttggtg
      961 attgtcagca acgggttggt caggatagcg gaggaggtgc cgctgaccgg gttggcgccg
     1021 gtctggtccg agatcgtata actgagcgac acggcgccgt tgctggcgac cacgcccggc
     1081 gcggtgtaga gaatcttctg caggcccgac gccgttggga gaccgagcga gaaggtgcct
     1141 tgcacaccgt cgccgcccgt gatggtcagc gtatcgccgg cgaagccagg cgtcaccgag
     1201 ccgatgatga cggtcttgcc cggcgccacc ttcacgccgg tcaagctgct gacgatagtg
     1261 gccccggcat ccaggcgaat gccgggcgtg tagcctaccc ccttgccgcc aattcgatcg
     1321 gcgacctgga aggtggcggt atcacgccgg ctgctcgtaa aggcgccggt ttcagtgtaa
     1381 acgacgttgt actggttggg ctgcgcggtg ccgccatcaa ccgtctgcac caggctaaag
     1441 gcacccaaac ccgcaaccgt ctgggtcagc gtcacgacat cgcctgccag cccggcggtg
     1501 atcgtatcta ccacggcgga ctgcccggca gccagaacga ccggcgcggc cggagtgacc
     1561 accgcgccgc ggtccaattg cacgttcgcc gacccggtgg ccgccgcgtc gttatactgg
     1621 tcggtgatgc tgtaggagac gctgtcgatt gccgtggcga ggatatgagc gggcgcggaa
     1681 tacagcacct gccgcacacc gttcaggtcg gcaatgccca ggctgacggt gcccagcgag
     1741 ccgccacccc gggtaaggcg cagtgtgtcc ccagccaggc caggagccac gctgccgatc
     1801 accacgctct ggctattctc cacgttattg gcgggggcaa cctgtgtcac tgtcggccca
     1861 ctgtccaccg ccgtgatggt gaggatggtg ctggtcgagc tggtgacgct gcccatggcg
     1921 acggtcaggc cgaagctggt ggcgacgccg cggccgggcg cgacttgatg ggcggtcgag
     1981 gtgaacgcca gggcgcgcag ctcgctacca aggctgactg agctggtggc ggcgaggctg
     2041 tacatgccga ttccggtctt ggtcaggccg gggccggaaa ggatgccatc ggtgtcggtg
     2101 gcggcgcctc cgctcgtcag ggtgatgccg actctgatgg cgctgctgtt gtcgaaatcg
     2161 ccgacggcaa tcgcgccgaa cggcgcgaca agggcggcgt cagtgccttt ctggtttgct
     2221 gacaggccgg tgaggcgggg tggggtgttc tgcgccgtcg ccgtgggcga cgcataggcg
     2281 cgcacgtaat ccaccagcag gtgaccggac tctccgacgg ccgctcccgg ccaactgccg
     2341 gcgccgccga ccgcaagatt gaccagcata tac
//
LOCUS       DATAJL010000159         2159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_15481,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000159 DATAJL010000000
VERSION     DATAJL010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15481"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            133..855
                     /locus_tag="VHN39_02940"
     CDS             133..855
                     /locus_tag="VHN39_02940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family protein"
                     /protein_id="HEX2815322.1"
                     /translation="MRRADRLFQIIQVLRRTRRPVTADAMAAELETSKRTVYRDIADL
                     MAQRVPIRGEAGVGYVLDGGYDLPPLMLTPDEIEAAVLGAQWVAGRGDPALARAALDL
                     IAKIGAAVPERLRPFALEPTGRAAPRWNIAPDGLDMALVRHAIRSGHKIVLSYRDEQD
                     RVSERTVWPFAVGYHETVRLIIAWCEMRTDFRSFRTDRVTGAAFQGERYPERPATLRA
                     RWRKLMNEKMTEMGVSRPGGEA"
     gene            complement(1130..1855)
                     /gene="lptB"
                     /locus_tag="VHN39_02945"
     CDS             complement(1130..1855)
                     /gene="lptB"
                     /locus_tag="VHN39_02945"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEX2815323.1"
                     /translation="MTGAGLVVDNIGKSFRGRPVVKGVSLHLARGEVVGLLGPNGAGK
                     TTCFYMITGLIPVDYGSIYLDGENITAQPMYQRARMGVGYLPQETSIFRGMSVADNVM
                     AVVELRERDRKRARAMVTELLEELHIEHLRNAPAISLSGGERRRVEIARALASEPSFM
                     LLDEPFAGIDPLAITDIREVIAYLKKRGIGILITDHNVRETLDIIDRASIIHAGEVLF
                     EGSPDQIVDDPEVRRVYLGDTFA"
     gene            complement(1914..>2159)
                     /locus_tag="VHN39_02950"
     CDS             complement(1914..>2159)
                     /locus_tag="VHN39_02950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815324.1"
                     /translation="TTTITITGDVTAVDGENVMRGTKMVYNTQTGEGHVEGGGKGPNA
                     KNRPRGVFYPKDSEAQAQTPGDQPADAPVAKKKKAAK"
BASE COUNT          313 a          696 c          779 g          371 t
ORIGIN      
        1 gtttcttgct ggggacctta cgagcccgaa cgccaccgat tggttaatgc cgcgcatgat
       61 gcgtggggcg ttggcgggac ctcgcgcgcc tgtcagactg ctgtcagcaa actggcagga
      121 ggcatcgaga cgatgcggcg agcggaccgg ctgttccaga tcatccaggt gctgcggcgc
      181 acgcgccggc cggtgaccgc cgacgccatg gccgcggagc tggagacctc caagcgcacc
      241 gtctaccgcg acatcgccga cctgatggcc cagcgggtgc cgatccgcgg cgaggcgggt
      301 gtgggctatg tgctggacgg cggctacgac ctgccgccgc tgatgctgac gccggacgag
      361 atcgaggccg ccgtgctggg cgcccagtgg gtggcggggc gcggtgaccc ggcgctggcg
      421 cgcgcggcgc tggacctgat cgccaagatc ggggcggccg ttcccgaacg cctgcgcccc
      481 ttcgcgctgg agcccaccgg ccgggctgcg ccgcgctgga acatcgcccc cgacggcctg
      541 gacatggccc tggtgcgtca tgcgatccgg tcgggtcaca agatcgtgct gagctatcgc
      601 gacgagcagg accgggtgag cgagcgcacc gtctggccct tcgcggtcgg ctatcatgag
      661 actgtgcggc tgatcatcgc ctggtgcgag atgcgcaccg acttccgcag ctttcggacg
      721 gaccgggtga ccggcgccgc cttccagggc gagcgctatc ctgaacggcc cgcaaccttg
      781 cgcgcgcgct ggcgcaagct gatgaacgag aagatgacgg agatgggcgt gtcgaggccg
      841 ggcggggagg cctgaggcgg agcgctacgc cggctaggcc ccgaggcgcg gcggcggctc
      901 gccgctgagg ccctcgtaga agtactggat ttccaccccg agcgcccgcg cgaaccgcca
      961 cagcgtcgcc gccgacatgc ggtgcgcggc gcattcgtat ttttggacct gctggaagcg
     1021 gacgccgcag ctcgtcccaa gatcgtttgc gtaaggtgca gatgtttgcg gcgctgacgc
     1081 aggcgatcct atttttgaaa tggatcgaaa ggggcggcgc cgtgcgccgt caggcgaatg
     1141 tgtcgcccag gtagacgcgg cggacttccg ggtcgtcgac gatctggtcc ggggagccct
     1201 cgaacagcac ctctcccgcg tggatgatcg aggcgcggtc gatgatgtcg agggtttcgc
     1261 ggacgttgtg gtcagtgatc aggatgccga tgccgcgctt cttgaggtag gcgatcactt
     1321 cgcggatgtc ggtgatggcc agggggtcga tgccggcgaa gggctcgtcc aggagcatga
     1381 aggagggctc ggacgccaga gcgcgggcaa tctccacgcg ccgccgctca ccgcccgaca
     1441 gcgagatggc cggcgcattg cgcaggtgct cgatatgcag ctcttccagc agctcggtga
     1501 ccatggcccg ggcgcgcttc ctgtcgcgct cgcgcagctc gaccaccgcc atgacgttgt
     1561 cggcgacgct catgccgcgg aagatcgagg tttcctgcgg cagatagccc acgcccatgc
     1621 gggcgcgctg gtacatgggc tgggcggtga tgttctcacc gtcgaggtag atcgagccgt
     1681 agtcgaccgg gatcaggccg gtgatcatgt agaaacaggt ggtcttgccg gcgccgttgg
     1741 ggcccagcag gcccacgacc tcgccgcgcg ccaggtgcag ggagacgcct ttcaccaccg
     1801 gtcgcccgcg gaatgacttg ccgatgttgt cgaccaccag gccggcgccg gtcatgccgg
     1861 ggggcgtatc gaagcgttcc accttcaagc gttcacctga ccctcagcac cgcctacttg
     1921 gcggctttct tcttcttggc gaccggggcg tccgcgggct ggtcgcccgg ggtttgagcc
     1981 tgggcctcgg agtccttcgg atagaagacc ccgcgcggcc ggttcttggc gttcggcccc
     2041 tttccgccgc cctcgacgtg cccctcgccg gtctgggtgt tgtagaccat cttggtcccg
     2101 cgcatcacgt tctcgccgtc cacggcggtg acgtcgccgg tgatggtgat ggtggtggt
//
LOCUS       DATAJL010000160         9326 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104321,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000160 DATAJL010000000
VERSION     DATAJL010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9326)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9326)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9326
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104321"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..658)
                     /locus_tag="VHN39_02955"
     CDS             complement(<1..658)
                     /locus_tag="VHN39_02955"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX2815325.1"
                     /translation="MAWKVLAVAAAALTMGAAPAPAPAPAPAPMATPTAQGYLGDAGP
                     DGYKILPPAPVAGTTRYEADRAIYLGTRSLKDTPRWALAQNDVNQLGILKDLSCSIGV
                     DLTQANAPKTVALIARVGRDVSRATDRPKDIYKRQRPFLIDKGETCIAQSDALAKSPD
                     YPSGHNAWGWTVGLIMAELAPDRATEILARARAFGEGRLVCGVHNLSAVEAGRLNGSI
                     V"
     gene            798..1178
                     /locus_tag="VHN39_02960"
     CDS             798..1178
                     /locus_tag="VHN39_02960"
                     /inference="COORDINATES: protein motif:HMM:NF021388.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2089 domain-containing protein"
                     /protein_id="HEX2815326.1"
                     /translation="MNNSKTQDWQALSELTRGRPIIVERVRLTEQGVAIEGAFELPRL
                     AQLAAEDQVFVAAFVRSHGSIKEMEQVFGVSYPTIKARLNRIAGSLEFVETDPTPGRE
                     EVLERLARGEITADQAVAELEGRR"
     gene            1175..1537
                     /locus_tag="VHN39_02965"
     CDS             1175..1537
                     /locus_tag="VHN39_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815327.1"
                     /translation="MTPTPRAVSHFGLAAMEARAVRTRRIVAPAASAPPPARLRPQPE
                     VQPRRFRLRLWLPLTPLFLLLAPFALLLAPFVYFAPRPYGERPFATVLGVGALLLSLG
                     GTVIDIDARDALIRIKIF"
     gene            1549..1983
                     /locus_tag="VHN39_02970"
     CDS             1549..1983
                     /locus_tag="VHN39_02970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815328.1"
                     /translation="MNNDRRSVLQMLADGKINADEAERLIGAMEGAGPAPRPFEGAAA
                     GNNKPPPKYLRVSVDATDPGEGPTKVNIRVPMALLRAGVRLTSLIPPAARDQVNAELA
                     KNGMPFDIGQLKPENLEDLIAHLDDLTVDVDAQDAKVRIYCE"
     gene            complement(2211..3269)
                     /locus_tag="VHN39_02975"
     CDS             complement(2211..3269)
                     /locus_tag="VHN39_02975"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HEX2815329.1"
                     /translation="MNADVQKTNRKAELLANTVEHVAIDQYDARPVIDAMRKMSFTSR
                     DTARAADIWSMSLEDTDCSTWLTLAGSTSAGGCMHIYRDMLKYGMIDVVVSTGASIVD
                     MDFFEALGFKHYQAQSNVDDRDLRDLYIDRIYDTYIDEEELQNCDGTIYALCEALEPR
                     PYSSREFIWEMGKWLADGNAKKPGSLVQTAYEEGVPIFCPAFVDSSAGFGLVKHQVER
                     MQAGKPYLTIDAVADFRELTDIKIAAGATGLFMVGGGVPKNFAQDTVVCAEILGHEVE
                     MHKYAVQITVADVRDGACSSSTLKEACSWGKVDVTWEQMVFAEATTVVPLIASDAWHR
                     GSWKTRTKRRWAKLFGKA"
     gene            complement(3368..4654)
                     /locus_tag="VHN39_02980"
     CDS             complement(3368..4654)
                     /locus_tag="VHN39_02980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HEX2815330.1"
                     /translation="MHTYHTPLDLVRDRSPERPVALARPDAVAVAARWFQDNFKGDVF
                     YAVKANPSPWVIETLAANGVTSFDVASIPEIELVAAHAPGARLAFMHPVKSRSAIKRA
                     YAEFGVRTFAFDTHEELAKILEATGGARDLTLMVRLAVSAVGAAYSLSGKFGVETHEA
                     SALLLAARQATQGRLGVSFHVGSQCMRPTAFQAAMAQASRAIVRAGVMVDVVDVGGGF
                     PSVYPGMVPPDMADYLDSIDRGFAEMMVHEDTELWCEPGRALVAEASSILTKVELKKG
                     DALYLNDGSYGSLFDAAHTKWPFPVKLFRAASEDGEDGEAREVEGALRPFRFYGPTCD
                     SLDHMPGPFWLPDDVREGDYVEIGMLGAYGVAMNTRFNGFGDAETAIVEDAPMASMFG
                     LAGRNIRLPREAQEEERKVVRLSRPKGRAGKSRRKR"
     gene            4901..5692
                     /gene="phnC"
                     /locus_tag="VHN39_02985"
     CDS             4901..5692
                     /gene="phnC"
                     /locus_tag="VHN39_02985"
                     /EC_number="7.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015416 - ABC-type phosphonate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015716 - organic phosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
                     /protein_id="HEX2815331.1"
                     /translation="MPDAVLSIRKASKSFGERRALDGVSLEVRKGEMIALIGPSGSGK
                     STLLRSISGLQTIDAGEGVIEAFGGPVQEHGKISGGVRKTRTRIGFIFQQFNLVGRLS
                     LFTNVALGSLGRIEGWRGFLGLWPQETKTAAMAALVRVGVADYAAQRANTLSGGQQQR
                     GAIARALVQKAKIILADEPVASLDPVAARKVMESLRDLNKEDGLTVVVTLHQVDYALR
                     YCERVIALKAGKIVYDGPAGGLKTEQLIDIYGPEFEDVFWEGAPK"
     gene            5689..6696
                     /gene="phnD"
                     /locus_tag="VHN39_02990"
     CDS             5689..6696
                     /gene="phnD"
                     /locus_tag="VHN39_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0043168 - anion binding [Evidence IEA];
                     GO_function: GO:0043225 - ATPase-coupled inorganic anion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate/phosphite/phosphonate ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX2815332.1"
                     /translation="MIARRTLSAVAMACAAMCLASCSPKSTGTAAPKEIVFSILSAEN
                     QASMAPLWQPLLDDMSAQIGVHVKPYFSSNYTSQIEAMRFKQVQVGWFSALPALDAVE
                     RANAEVLGRVIDAGGDETYKSVIIVRKGSGITLDKILACGQKYTFGIGDPQSTSGTLA
                     PMAYLFTPKGIEPSKCFKAVRSASHQANSFSVANGVLDVATNNTVGVIFFTREKPELA
                     AKLETVWTSPALPESSIVARKDLDPAVKEKMRQFFLTYGVGTGPTADKQRAVLKGLAY
                     GGFKPADNSYLDPIREMQASEALAAARHTGNPGKIAAAQAAYDKIHTAAALKRAKEPD
                     V"
     gene            6696..7514
                     /gene="phnE"
                     /locus_tag="VHN39_02995"
     CDS             6696..7514
                     /gene="phnE"
                     /locus_tag="VHN39_02995"
                     /EC_number="7.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015416 - ABC-type phosphonate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015716 - organic phosphonate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HEX2815333.1"
                     /translation="MTLASAAQGLGEIPQPPQRSLIQRAPDILVWGAVIVLLIVGFGP
                     VDMSHLPRLFTNSDNMREFGKDFLKPNFDLWRLYVAQMWLTIQIAMWGTTLAVVIAIP
                     FGLACARNVSPPWLQQPMRLLMNLLRSIPDLVVGTLFIVAVGLGPFAGVMALALNTGG
                     VLAKLFSEAVESIDKGPVEGVRATGASKLHEVIWGVIPQVGPLWTSYALYRFESNSRS
                     ATVLGLIGAGGIGQLLFETLNAFDYHHLSAIVIVIIVAVTLIDLLSQLMRSRLL"
     gene            7802..8842
                     /gene="pstS"
                     /locus_tag="VHN39_03000"
     CDS             7802..8842
                     /gene="pstS"
                     /locus_tag="VHN39_03000"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA];
                     GO_process: GO:0035435 - phosphate ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEX2815334.1"
                     /translation="MLKILGAAFGAALIVAAATTASAAGTISGAGATFPQPVYAKWAE
                     EYKAQTGTSLNYQAIGSGGGIKQINASTVDFGASDKPLKPDDLAAGGLSMFPTVVGGV
                     VPVMNLPGIKPGQIKLTGANLADIYRGAIKKWNDPLLAKANPGMTLPNLPITVVHRSD
                     GSGTTFLFTTYLSMKAQHWATEVGANDAVQWPVGLGGKGNDGVAAFVKQTPGAIGYVE
                     YAYAKQNAMTYALMQNKDGKFVTPDAKNFAAAAANAKWASAPGFYLLLLDQPGADAWP
                     ITGATFILVHTKQTDAAKGKEVLSFFDWCYKNGDPAAGQLDYVALPASVKDLIRKSWV
                     KVVGPDGKPVYH"
     gene            8994..>9326
                     /locus_tag="VHN39_03005"
     CDS             8994..>9326
                     /locus_tag="VHN39_03005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEX2815335.1"
                     /translation="MFEWVCCGAATMLLVALGWLLFSLVLGGWPAIRKFGFVFLTTAT
                     WNPVTDVYGAAGPIVGTLVTAALALAIALPIAGGVAFFLTELCPAPLRRPIGTAVELL
                     AGIPSIVYG"
BASE COUNT         1533 a         3199 c         3036 g         1558 t
ORIGIN      
        1 ccacgatcga gccgttcagc cggccggcct ccacggcgct caggttgtgc acgccgcaca
       61 ccaggcggcc ctcgccgaag gcccgcgcgc gggccaggat ttcggtcgcc cggtcgggcg
      121 cgagctcggc catgatcagc ccgaccgtcc agccccatgc gttgtggccc gaggggtagt
      181 ccgggctctt ggccagggcg tcgctctggg cgatgcaggt ctcgcccttg tcgatcagga
      241 acggccgctg gcgcttgtag atgtccttcg gccggtcggt ggcgcggctc acgtcgcgcc
      301 cgacgcgggc gatcagcgcg acggtcttcg gcgcattggc ctgggtgagg tcgacgccga
      361 tcgaacagga gaggtctttc aggattccca gctgattgac gtcgttctgc gccagggccc
      421 agcgcggggt gtccttcaga gagcgggtgc cgaggtagat cgcccggtcg gcctcgtagc
      481 gcgtggtgcc ggcgaccggc gcgggcggca ggatcttgta gccgtcgggt ccggcgtcgc
      541 ccaggtagcc ctgcgccgtc ggcgtcgcca tgggcgccgg agccggagcc ggagcgggag
      601 cgggggccgc ccccatcgtc agagccgccg ctgcgaccgc cagaaccttc cacgccatcc
      661 cgaactctcc ctgtgtcgca tccggttttg cagagctggg cgccggattc aaccgcggcc
      721 ttgaggaatt ctgcctcggg gatggtcctt gaattaaaaa acttgactcg agaattgaga
      781 ttattaatct aggggtcatg aacaattcga aaacccaaga ctggcaggcg cttagcgaac
      841 tcacccgcgg ccgccccatc atcgtcgagc gcgtccggct gaccgagcag ggcgtggcca
      901 tcgagggcgc cttcgagctg ccgcgcctgg cccagctcgc cgccgaggac caggtcttcg
      961 tggccgcttt cgtgcgcagc cacggctcga tcaaggagat ggagcaggtg ttcggcgtct
     1021 cctacccgac catcaaggcc cggctgaacc gcatcgccgg cagcctggag ttcgtggaaa
     1081 ccgatcccac ccctggccgc gaggaggtgc tggagcgcct cgcccgcggc gagatcaccg
     1141 ctgaccaggc tgtcgccgaa ctggaggggc gccgatgaca cccacaccta gagccgtgag
     1201 ccacttcggc ctggccgcca tggaggcccg cgccgtgcgg acccgccgga tcgtcgcgcc
     1261 cgccgcctcg gccccgccgc ccgcgcgcct tcggccgcag ccggaggtcc agccgcgccg
     1321 cttcagactc cgcctctggc tgccgctgac gccgctcttc ctgctgctgg cgcccttcgc
     1381 cctgctactg gcgcccttcg tctacttcgc gccgcggccc tacggcgagc ggccgttcgc
     1441 caccgtcctg ggcgtcggcg ccctgctgct cagcctcggc ggcacggtga tcgatatcga
     1501 cgcccgtgac gccctcatcc gcatcaagat tttctaggag acctccccat gaacaacgat
     1561 cgacgctccg tcctgcagat gctggccgat ggaaagatca acgccgacga ggccgagcgc
     1621 ctcatcggag ccatggaagg cgcgggcccc gcgccgcgcc cgttcgaagg cgcggccgcc
     1681 ggcaacaaca agcccccgcc gaagtacctg cgcgtgtcgg tggatgcgac cgatcccggc
     1741 gagggcccga ccaaggtcaa catccgcgtg ccgatggcct tgctgcgggc cggggtgcgg
     1801 ctgaccagcc tgatcccgcc ggcggcgcgc gaccaggtca acgccgagct cgccaaaaac
     1861 ggcatgccct tcgatatcgg ccagctgaag ccggagaacc tcgaggacct gatcgcccat
     1921 ctcgacgacc tcacggtcga cgtggacgcc caggacgcca aggtccggat ctactgcgaa
     1981 tagccgcgtt cctccccggg actagtgtcc cgaatccgaa gttcgccggt gcttggggca
     2041 ggctcgatcg aacttcggat tcgataagga cactagcaag tgtatgtttc tagtgtgctt
     2101 tttggatatg aagttcgctc cgcgctcgat ccatcaatca ggcgaacttc agatccagca
     2161 cactagactg gccgtcgccg atcccccggc ggcggccatt tctttggggt ctaggccttg
     2221 ccgaacagct tcgcccagcg gcgcttggtg cgggtcttcc acgagccccg gtgccaggcg
     2281 tcggacgcga tcagcggcac caccgtggtg gcctcggcga acaccatctg ttcccaggtg
     2341 acgtcgacct tgccccagga gcaggcctcc ttgagggtcg aagacgaaca ggcgccgtcg
     2401 cggacgtcgg ccacggtgat ctgcacggcg tacttatgca tctcgacctc gtggccgagg
     2461 atctcggcgc agaccacggt gtcctgggcg aagttcttgg gcacgccgcc gccgaccatg
     2521 aacaggcccg tggcgcccgc ggcgatcttg atgtccgtca gttcgcggaa gtcggcgacg
     2581 gcgtcgatgg tcaggtaggg cttgccagcc tgcatccgct ccacctggtg cttcaccagg
     2641 ccgaagcccg cggacgagtc gacgaaggcc gggcagaaga tcggcacgcc ctcctcatag
     2701 gccgtctgaa ccagcgaccc gggcttcttg gcgttgccgt ccgccagcca cttgcccatc
     2761 tcccagatga actcgcggct ggaatagggg cgtggctcca gcgcttcgca cagggcgtag
     2821 atcgtcccgt cgcagttctg cagctcttcc tcgtcgatgt aggtgtcgta gatccgatcg
     2881 atgtagaggt cgcgcaggtc gcggtcgtcg acgttcgact gggcctgata gtgcttgaag
     2941 cccaaggcct cgaagaaatc catgtcgacg atggaggcgc cggtggagac caccacgtcg
     3001 atcatcccgt acttcagcat gtcgcggtag atgtgcatgc agccgccggc cgaggtggag
     3061 cccgccagcg tcagccaggt ggagcagtcc gtgtcctcca ggctcatcga ccagatgtcg
     3121 gcggcgcgcg cggtgtccct gctggtgaag ctcatcttgc gcatggcgtc gatcaccggg
     3181 cgggcgtcgt actggtcgat cgccacatgc tcgacggtgt tggccagcaa ttcggccttg
     3241 cggttcgtct tctgaacgtc agcgttcatt ctaccggttc cttcggagtt tgagcgcccg
     3301 tccataggaa acgcgcgacc gggacggagc gaccggccgc gcctttaaca cgcagatgcg
     3361 tcaggtgtta ccgcttgcgg cggctcttgc cggcacggcc cttgggccgc gacagccgga
     3421 cgaccttgcg ttcctcctcc tgcgcctcgc ggggcaggcg gatgttgcgc ccggccagac
     3481 cgaacatcga ggccatgggt gcatcctcga cgatcgcggt ctcggcgtcg ccgaagccgt
     3541 tgaagcgggt gttcatggcc acgccataag cgcccagcat gccgatctcg acatagtcgc
     3601 cctcgcggac gtcgtccggc agccagaacg gcccaggcat gtggtcgagg ctgtcgcagg
     3661 tcggtccgta gaaacgaaag ggccgcaggg cgccttccac ttcgcgggcc tcgccgtcct
     3721 ccccatcttc agaggcggcg cggaacagct tcaccggaaa gggccatttg gtgtgcgccg
     3781 catcgaacag gctgccgtag gagccatcgt tcagatagag cgcgtcaccc ttcttcagct
     3841 cgaccttggt gagaatcgag gaggcctcgg ccaccaacgc ccggccgggc tcgcaccaga
     3901 gctcggtgtc ctcgtggacc atcatctcgg cgaagccgcg atcgatgcta tcgaggtaat
     3961 cggccatgtc gggcggcacc atgcccggat agacgctcgg gaagccgccg cccacgtcga
     4021 cgacgtcgac catgacgcca gcgcgcacga tggcgcggct cgcctgggcc atggcggcct
     4081 ggaaggcggt tgggcgcatg cattggctgc ccacgtggaa ggagaccccc aggcggccct
     4141 gcgtggcctg gcgggcggcc agcagaaggg ccgaggcctc atgggtctcg acgccgaact
     4201 tgccggagag cgaataggcc gcgcccacgg cgctcaccgc caggcggacc atcagcgtca
     4261 ggtcacgggc cccgccggtc gcctcgagga tcttggcgag ttcttcgtgg gtgtcgaagg
     4321 cgaaggtcct gacgccgaac tcggcatagg cgcgcttgat ggcgcttcgg ctcttcaccg
     4381 ggtgcatgaa agccaggcgc gcgcccggcg catgggcggc caccagctcg atctccggga
     4441 tcgaggccac atcgaaggac gtcacgccgt tcgccgccag ggtctcgatg acccacggcg
     4501 aagggttggc tttcacagcg tagaagacgt cgcctttgaa attgtcctgg aaccagcgcg
     4561 ccgcgaccgc taccgcgtcc ggccgcgcga gcgcgacagg acgttccggt gaacgatcac
     4621 ggaccaggtc caggggcgta tgatacgtgt gcaattcacg taacccccaa cggatagttg
     4681 aacccaatcc ggcgttagca gcgcttttca ggacatcggg tccgccggaa cgcgccaaat
     4741 agggtcataa aaccgagaag taaagacttc tatccacagg gccgcccccc gcacttcgac
     4801 gcgctagacc gcatgcgggg cgccgtgtca tgaagctgag gcgaggacgg gcgtggatcg
     4861 ccccctttgc gcgtgtctat cggggaactt taagccgtcc atgcctgacg ccgtcctgtc
     4921 catccggaag gcctccaaaa gcttcggcga acgccgcgcg ctcgatggcg tgtcactgga
     4981 ggtccgcaag ggggagatga tcgccctgat cggcccctcc gggtcgggga aatcgaccct
     5041 tttgcgctcg atttcgggcc tgcagaccat cgacgccgga gagggcgtca tcgaggcctt
     5101 cggcgggccc gttcaggagc acggcaagat ctcgggcggg gtgcgcaaga cccgcacccg
     5161 gatcggcttc atcttccagc agttcaacct ggtcggccgg ctgtcgctgt tcaccaatgt
     5221 cgccctggga tcgctcggcc gcatcgaggg ctggcggggg ttcctgggcc tgtggccgca
     5281 ggagaccaag accgcggcca tggcggccct ggtccgcgtc ggcgtcgccg actacgccgc
     5341 ccagcgggcc aatacgctct ccggcggcca gcagcagcgc ggcgccatcg cgcgcgcgct
     5401 cgtccagaag gccaagatca tccttgccga cgagccggtg gcctcgctgg atccggtcgc
     5461 cgcgcgcaag gttatggaga gcctgcgcga cctcaacaaa gaggacgggt tgaccgtcgt
     5521 cgtcaccctg caccaggtgg actacgcgct gcgctactgc gagcgggtta tcgcgctgaa
     5581 ggccggcaag atcgtctatg acggcccggc gggcggcctg aagaccgaac agctcatcga
     5641 catctacggt ccggaattcg aagacgtctt ctgggaagga gccccaaaat gatcgcgcgc
     5701 cgcacgctga gcgccgtggc catggcctgc gccgccatgt gcctggcgag ctgcagcccg
     5761 aagtcgaccg ggaccgcagc gcccaaggag atcgtcttct cgatcctctc ggccgagaac
     5821 caagcctcga tggcgcccct gtggcagccg ctgctggacg acatgtccgc ccagatcggc
     5881 gtgcatgtga agccctactt ctcctccaac tacacctcgc agatcgaggc catgcgcttc
     5941 aaacaggtgc aggtgggctg gttttcggcc ctgccggcgc tggacgccgt cgagcgcgcc
     6001 aacgccgagg tgctgggccg ggtgatcgac gccggcggcg acgagaccta caaatcggtg
     6061 atcatcgtgc gcaagggctc ggggatcacg ctcgataaga tcctggcctg cggtcagaaa
     6121 tacaccttcg gcatcggcga tccgcagtcg acgtcgggca cgctggcgcc catggcctac
     6181 ctcttcaccc ccaagggcat cgagccctcc aagtgcttca aggcggtccg ctcggccagc
     6241 catcaggcca attccttctc cgtggccaac ggcgtcctgg acgtggccac caacaacacc
     6301 gtgggcgtta tctttttcac ccgcgaaaag ccggagctgg ccgccaagct ggagaccgtc
     6361 tggacctcac ccgccctgcc ggaatcctcg atcgtcgcgc gcaaggacct ggatccggcg
     6421 gtcaaggaga agatgcgcca gttcttcctg acctatggcg tcggaaccgg ccccaccgcc
     6481 gacaagcagc gcgcggtcct gaagggccta gcctatggcg gcttcaagcc ggccgacaac
     6541 tcctacctcg acccgatccg cgagatgcag gcctccgagg ccctggccgc ggcccgccat
     6601 accggtaacc ccggcaagat cgccgcggcc caggcggcct atgacaagat ccacaccgcc
     6661 gccgccctga agcgcgccaa ggagccggac gtctgatgac gctcgcgtct gccgcgcagg
     6721 gcctcggcga gattccgcag ccgccgcaac gctcgctgat ccagcgcgcg cccgatatcc
     6781 tcgtctgggg cgcggtgatc gtgctcttga tcgtgggctt cgggccggtg gacatgagcc
     6841 atctgccgcg cctcttcacc aactccgaca acatgcgcga gttcggcaag gacttcctga
     6901 agccgaactt cgacctgtgg cggctctacg tcgcccagat gtggctgacg atccagatcg
     6961 ccatgtgggg cacgacgctg gcggtggtga tcgccattcc gtttggcctg gcctgcgcgc
     7021 gcaacgtctc gccgccctgg ctgcagcagc ccatgcggct tctgatgaac ctgctgcgct
     7081 cgattcccga cctggtggtg ggcacgcttt tcatcgtggc cgtgggcctt gggcccttcg
     7141 ccggtgtcat ggcgctggcc ctcaacaccg gcggcgtgct cgccaagctc ttctccgagg
     7201 ccgtggagtc catcgacaag ggcccggtcg agggcgtgcg ggccacgggc gcctcgaagc
     7261 tgcatgaggt gatctggggc gtgatcccac aggtcggccc cctgtggacc tcctacgccc
     7321 tctaccgctt cgaatcgaac tcccgctcgg ccacggtgct gggcctgatc ggcgccggcg
     7381 gcatcggcca gctcctgttc gagaccctta acgccttcga ctaccaccac ctctcggcca
     7441 tcgtgatcgt gatcatcgtc gccgtgaccc tgatcgacct gctgtcacag ttgatgcgta
     7501 gccgcctgct ctgaccccgc aaaggaaacg ccgccgcgtg gggggacgcg gcggcgctca
     7561 agtcgcgggg agggatcgcc gcttggaaaa cgcgcccgcc gcgcgggcca acgacgtcga
     7621 cgcaggctgc gggcgagaca aggtaaggta ggtccggcat gtgacggctc gccaacgcgc
     7681 gcgtgacaat cctgtgacgg cccggcgacg acctggtccg gtgtcacaaa cctgtcgtcg
     7741 ccggacgata atcagcgggc caagagcggc atggatgggg cgctcttttc aggagagaac
     7801 catgttgaag attcttgggg cagcgtttgg cgccgccctg atcgtcgccg cggcgacgac
     7861 cgcctctgcg gctggcacga tctcgggcgc cggggcgacc ttcccgcagc cggtctacgc
     7921 caagtgggcg gaagaatata aggcgcagac cggcaccagc ctgaactatc aggcgatcgg
     7981 ttccggcggc ggcatcaagc agatcaacgc ctcgaccgtc gacttcggcg ccagcgacaa
     8041 acccctgaag ccggacgatc tggcggccgg cggcctgtcc atgttcccca ccgtggtcgg
     8101 cggcgtggtg ccggtgatga acctgccggg catcaagccc ggccagatca agcttactgg
     8161 agctaacctg gccgacatct accgcggggc catcaagaag tggaacgacc cgctgctggc
     8221 caaggccaat cctggcatga ccttgccgaa cctgccgatc acggtggtgc atcgctcgga
     8281 cgggtcgggg accaccttcc tgttcaccac ctacctcagc atgaaggccc agcactgggc
     8341 caccgaggtt ggggccaatg acgctgtcca atggccggtc ggcctgggcg gcaagggcaa
     8401 cgacggcgtc gcggccttcg tgaaacagac gccgggcgcg atcggctacg tcgaatatgc
     8461 ctatgccaag cagaacgcga tgacctacgc gctcatgcag aacaaggacg gcaagttcgt
     8521 cacgccggac gccaagaact tcgccgccgc cgccgccaac gccaagtggg cctccgcgcc
     8581 gggcttctac ctgctgctgc tcgaccagcc gggcgccgac gcctggccga tcaccggagc
     8641 caccttcatc ctagtgcaca ccaagcagac cgacgccgcc aagggcaagg aagtgctgag
     8701 cttcttcgac tggtgctaca aaaacggcga tccggccgcc ggtcagctcg actatgtggc
     8761 gcttcccgca tcggtgaagg atctgatccg gaagtcgtgg gttaaggtcg tgggcccgga
     8821 cggcaagccg gtctatcact agcctcacac ccgtcagata gagatcccat cgccgttcgg
     8881 acggcgatgg gacacggata aaccggtccc gcgatttcat gtcagacgcc acccttcctc
     8941 aagcggctaa gtcgatccgc cgcgccaggc cgagaggcgc attcgtcgcg ctggtgtttg
     9001 agtgggtctg ctgcggcgcg gccacgatgc tcctggtggc gctcggctgg ctgctctttt
     9061 cgctggtgct tggcggctgg ccggcgatcc ggaaattcgg cttcgtcttc ctgaccaccg
     9121 ctacctggaa cccggtgacc gatgtctacg gcgccgcggg tcccatcgtc ggcaccctgg
     9181 tcaccgcggc gctggccttg gcgatcgcgc ttccgatcgc cggcggggtc gccttcttcc
     9241 tcaccgagct ctgcccggcg ccgctgcgcc gcccgatcgg cacggccgtc gagctgctcg
     9301 ccggcatccc ctccatcgtc tacggc
//
LOCUS       DATAJL010000161         3128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_65569,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000161 DATAJL010000000
VERSION     DATAJL010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65569"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VHN39_03010"
     CDS             complement(<1..239)
                     /locus_tag="VHN39_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEX2815336.1"
                     /translation="MSTARSARGAASRLAGRRAEVLAAVWLMAKGYRILGFRLKTRQA
                     EIDLLALRGRTLAVVEVKRRTSLLIAMETVSFDQR"
     gene            complement(236..1123)
                     /gene="rsmI"
                     /locus_tag="VHN39_03015"
     CDS             complement(236..1123)
                     /gene="rsmI"
                     /locus_tag="VHN39_03015"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEX2815337.1"
                     /translation="MAVRPSPPALDDSALAPGLYVVATPIGNLRDITLRALDVLAAAD
                     LVLAEDTRVAGKLLQAYGLSAKLERYDEHGAERTRPKAMAALAQGKTVALVSDAGTPL
                     VSDPGYKLVKEAAAEGFPVFPIPGASALLAGLSAAGLPTDRFLFAGFPPPKSAARRTF
                     LEELAPIRSTLVFFEGGSRLAASLADMAAVLGGEREAVVCRELTKLYETFYRGPLSVL
                     AADPRLDAPKGEIVILVGPGREVDATAADIDTALADALTRLRPAEAAAEVAKALGLSR
                     RDVYQRAMAIRAAPQKAKT"
     gene            complement(1163..2305)
                     /gene="hemW"
                     /locus_tag="VHN39_03020"
     CDS             complement(1163..2305)
                     /gene="hemW"
                     /locus_tag="VHN39_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HEX2815338.1"
                     /translation="MTTGPKLGVYIHWPYCARICPYCDFNVFKDRKGEEPAALARAIV
                     ADLEAQAALTGPRELASIFLGGGTPSLMDPAWAGEMIAAARALWTPAADLEVTLEANP
                     TDAEAARFAAFAEAGVTRLSLGLQSLDEAALSFLGRNHDAATAVRATEAATRAFPRLS
                     IDMIYARPGQTPAAWGEELKAALDLGAEHVSPYQLTIEAGTAFDRAVRRGQFTPPDAD
                     TGAELFDTTQAVLEAAGFEAYEVSNHARGEAARSRHNLIYWQGHDYLGAGPGAHGRIT
                     TGGARQATYAAARPADYIARVAETGVGFATREVLSPREAAQERLLSGLRITDGVPLTD
                     VAALEIAPERIADLVRLGLLTPDPQRLRATASGRLVLDRLTAELAT"
     gene            complement(2302..2901)
                     /gene="rdgB"
                     /locus_tag="VHN39_03025"
     CDS             complement(2302..2901)
                     /gene="rdgB"
                     /locus_tag="VHN39_03025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEX2815339.1"
                     /translation="MALKLEPGTRLVVATHNPGKVRELAEILENRFDLVTAGDLGLAE
                     PDETETTFAGNALLKARAAAEASGLVALADDSGLSVAALDGSPGIYSARWAGPGRDFT
                     VAMKKVEERLEEARAQDFSAWFTSALAIAWPDGPAVVVEGRVDGTLSFPPRGDKGFGY
                     DPIFTPQGGSQTFGEMDPAAKDGMSHRARAFAKLKAALL"
BASE COUNT          456 a         1088 c         1128 g          456 t
ORIGIN      
        1 tcacgctggt cgaagctcac cgtctccatg gcgatcaaga ggctggtgcg ccgcttgacc
       61 tccaccactg cgagcgtccg gccgcggagc gccaggaggt cgatctccgc ctgccgggtc
      121 ttcaggcgaa accccaggat ccggtagccc ttggccatca gccagacggc ggccagcacc
      181 tcggcgcggc ggccggccag ccgcgaggcc gcgccacggg cggaccgcgc ggtgctcacg
      241 ttttcgcctt ttggggggcc gccctgatcg ccatcgcccg ctgatagacg tcccggcgtg
      301 agaggccgag cgccttggcg acctctgcgg cggcttcggc ggggcgcagg cgggtgagcg
      361 cgtcggcgag cgcggtgtcg atgtccgcgg cggtggcgtc gacctcacgg ccgggcccga
      421 ccaggatgac gatctcgccc ttgggcgcgt cgagtctggg gtcggcggcc aggacgctga
      481 gcggccctcg gtagaaggtc tcgtagagct tggtgagttc gcggcagacc acagcctcgc
      541 gctcgccgcc cagcaccgca gccatgtcgg ccaggctcgc cgccagccgc gaaccgccct
      601 cgaagaacac cagggtcgag cggatcggcg ccagttcctc cagaaaggtc cgccgcgcgg
      661 cgctcttggg cgggggaaag cccgcgaaca ggaaccggtc ggtgggcagg cccgccgccg
      721 aaagcccggc caggagcgcc gaggcgccgg ggatcgggaa gacgggaaag ccctccgcgg
      781 cggcttcctt gaccagcttg tagccggggt cggaaaccag cggcgtgccg gcgtcggaga
      841 ccagcgccac cgtcttgccc tgcgccagcg ccgccatggc cttgggccgg gtgcgctcgg
      901 ccccgtgctc atcgtagcgt tccagcttgg cggagaggcc ataggcctgc agcagcttgc
      961 cggccacgcg cgtgtcctcg gccagcacca ggtcggcggc ggccaggacg tcgagggcgc
     1021 ggagcgtgat gtcccgcagg ttaccgatcg gcgtcgccac cacatagagc cctggcgcga
     1081 gcgctgagtc gtccagagcg ggaggcgagg ggcggacggc catgccggag ggttcgccgg
     1141 tcagagcgcg gaaggcaagc gcctaggtcg ccagctcagc ggtgagccga tccagcacca
     1201 ggcgcccgga cgccgtggcg cgcagtcgtt gcgggtccgg cgtcaggagg ccaagccgca
     1261 cgaggtcggc gatccgttcc ggcgcgattt cgagagccgc cacgtcggtc aggggcaccc
     1321 cgtcggtgat ccgcaggccg ctaagcaggc gctcctgcgc ggcctcgcga gggctcagca
     1381 cctctcgggt ggcgaagccc acgcccgtct cggccacgcg ggcgatgtag tcggcgggcc
     1441 tggcggcggc gtaggtcgcc tgccgcgcgc cgcccgtggt gatccggcca tgcgcgccgg
     1501 gacccgcgcc caggtaatcg tggccctgcc aatagatcag gttgtggcgc gatcgcgcgg
     1561 cctcgccccg ggcgtggttg gagacttcgt aggcttcgaa accggccgcc tccagcaccg
     1621 cttgcgtggt gtcgaagagt tcggcgcccg tgtcggcgtc gggcggggtg aactggcccc
     1681 ggcgcacagc gcgatcgaag gcggtgccgg cctcgatggt cagctggtag ggcgagacgt
     1741 gctccgcgcc gaggtcgagc gcggccttca gctcctcgcc ccaggccgcc ggggtctggc
     1801 cgggtcgggc gtagatcatg tcgatggaga gcctggggaa ggctcgcgtg gccgcctccg
     1861 tggcccggac agccgtcgcc gcatcgtggt tgcggccgag gaagctcagg gcggcttcat
     1921 ccagcgactg caggcccagc gacagccggg tcacgcccgc ctcggcgaag gcggcgaacc
     1981 gggcggcctc ggcgtcggtg ggattggcct ccagcgtcac ctccaggtcc gccgcgggtg
     2041 tccagagcgc gcgggccgcg gcgatcatct cgcccgccca ggccgggtcc atcaacgatg
     2101 gcgtgccgcc gcccaggaag atcgaggcga gctcacgcgg gccggtcagc gcggcctgcg
     2161 cctccagatc ggcgacgatg gcgcgggcca gggcggcggg ttcttcaccc ttgcggtcct
     2221 tgaaaacgtt gaaatcgcag taggggcaga tgcgcgcgca gtagggccag tggatgtaga
     2281 cccccagctt ggggccggtg gtcacaagag cgcggccttc agcttggcga aggcccgcgc
     2341 ccggtggctc atgccgtcct tggccgccgg atccatctcg ccgaaggtct gagacccacc
     2401 ttgcggcgtg aagatcgggt cgtagccgaa gcccttgtcg ccgcggggcg ggaagctcag
     2461 tgtcccgtcc acccggcctt ccaccaccac cgccgggccg tcgggccagg cgatggcgag
     2521 cgccgaggtg aaccatgcgg agaaatcctg ggcgcgggcc tcttccagcc gctcctcgac
     2581 cttcttcatg gccacggtga agtcgcggcc cggtcccgcc cagcgcgccg aatagatgcc
     2641 gggcgagccg tcgagggccg ccaccgacag cccggaatcg tcggccagcg ccaccaggcc
     2701 cgaggcctcg gccgccgcgc gggccttcag cagcgcattg ccggcgaagg tggtctcggt
     2761 ctcgtcgggc tccgccagac ccagatctcc ggccgtcacc aggtcgaagc gattctcgag
     2821 gatttcggcc agctcgcgga ccttgccggg gttgtgggtg gccaccacca ggcgcgtccc
     2881 aggctccagc ttcagcgcca tcgattcacc gctcctttac ccaggagcga ccatagcctc
     2941 gccccgctct gttgcattgc gaaagtttaa tatcgttact cgatattaat ttgatcgcta
     3001 atcgatgcga gcctattgat tgtcgccatc gggacgggaa aaccaccccg aaatcacgct
     3061 gcaccgcagc aaaatcgaac tgaggaccaa gaccatgttt tcttccgtca tgagggcttt
     3121 cgaccgcg
//
LOCUS       DATAJL010000162         1504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91411,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000162 DATAJL010000000
VERSION     DATAJL010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91411"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VHN39_03030"
     CDS             complement(<1..191)
                     /locus_tag="VHN39_03030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COQ9 family protein"
                     /protein_id="HEX2815340.1"
                     /translation="MAKASPKASRADPSVDWATATEQQVLDAALPLAAREGWTSRLAT
                     MAGKACGLSAGETELLLPQG"
     gene            406..645
                     /gene="rpsU"
                     /locus_tag="VHN39_03035"
     CDS             406..645
                     /gene="rpsU"
                     /locus_tag="VHN39_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEX2815341.1"
                     /translation="MVQIFVRDNNVDQALKALKKKMQREGSFREMKRHVHYEKPSEKR
                     ARQKAEAVRRARKLARKRAQREGLIPAPKKPAPTR"
     gene            835..>1504
                     /locus_tag="VHN39_03040"
     CDS             835..>1504
                     /locus_tag="VHN39_03040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEX2815342.1"
                     /translation="MNLRNLAIWGVVIVVLIGLYSMVTGGGQKGANAGEITYSQLLQK
                     VNAGQVKTAEIRGPAVLVTDNANKQYTAVTPMNQDDLVRRLESTGANISVKSAGGPTV
                     VGLLLQALPVLLLIGVWIFFMRQMQGGARGAMGFGKSKARLLTENKNRVTFDDVAGVE
                     EAKEEVVEIVDFLKDPQKFQRLGGKIPKGALLIGPPGTGKTLLARAIAGEAGVPFFTI
                     SGSDF"
BASE COUNT          270 a          492 c          490 g          252 t
ORIGIN      
        1 ccctgcggca gcagaagctc ggtctcgccg gccgagagcc cgcaggcctt gcccgccatc
       61 gtcgccaggc gcgaggtcca gccctctcgc gcagcgagcg gcagagcggc gtccagaacc
      121 tgctgctcgg tcgcggtcgc ccaatcgaca gaggggtcgg cgcgcgaggc tttgggggag
      181 gctttggcca tgtcactcct ttacgtcacc ttgggtgcaa ggtgaaaacc ctacggtgcg
      241 gcgtggacat tcccggctcc ttctgatatt tcgccgcgct cgatctcgtg ggccctaagc
      301 cttcgggacc caaagcacgt gcaagagttt cttttgatcg ctcgccgccg cccctagccg
      361 ggactgaggg ggccgggcgc ccagcgacca acaggagaga gaaccctggt tcagattttc
      421 gtccgcgata acaacgtcga tcaagccctc aaggcgctga agaagaagat gcagcgcgaa
      481 ggctcgttcc gcgaaatgaa gcggcacgtc cactacgaaa agccctcgga aaagcgcgct
      541 cgccagaagg ctgaagccgt gcgccgggcg cgcaagctgg cccgcaagcg cgcacagcgc
      601 gaaggcctga tccccgcgcc gaagaagccg gcgccgacgc ggtagcgctt aattcagtaa
      661 attcatgcct atctaggggc cgcgtcttcc gggcgcggcc cctcgtattt gggggcgtat
      721 tgtcaagctg ggcgcggtct tcggtcgcgc gtcgcccggc caactggtga aacggcgccg
      781 aggtccctat ctttggggtt gcggcgccaa gccctgttcg aggcggtcta accgatgaat
      841 ctgcgaaatc tcgccatctg gggcgtcgtc atcgtcgtcc tgatcggcct ctattcgatg
      901 gtcacgggcg ggggccaaaa gggcgcgaac gcgggcgaaa tcacctattc gcagctgctg
      961 cagaaggtga acgccggcca ggtgaagacc gccgaaattc gcggtcccgc ggtcctggtc
     1021 accgacaacg ccaacaagca atatacggcc gtcacgccga tgaaccagga cgacctggtg
     1081 cggcgcctgg agagcacggg cgccaatatc tccgtgaagt ccgctggtgg accgaccgtg
     1141 gtgggcctgt tgctgcaggc cctgccggtg ctgctcctga tcggcgtctg gatcttcttc
     1201 atgcgccaga tgcagggcgg cgcccgcggc gccatgggct ttggcaagtc caaggcccgc
     1261 ctgctcaccg agaacaagaa ccgcgtcacc ttcgacgacg tggccggcgt cgaggaggcc
     1321 aaggaagagg tcgtcgagat cgtcgacttc ctgaaggacc cgcagaagtt ccagcgcctg
     1381 ggcggcaaga tccccaaggg cgccctgctg atcggccctc ccggtacagg taagaccctg
     1441 ctggcgcgcg ccatcgccgg tgaagccggc gtgcccttct tcaccatctc cggctccgac
     1501 ttcg
//
LOCUS       DATAJL010000163         7235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41528,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000163 DATAJL010000000
VERSION     DATAJL010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7235
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41528"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..1100)
                     /locus_tag="VHN39_03045"
     CDS             complement(126..1100)
                     /locus_tag="VHN39_03045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815343.1"
                     /translation="MDLIERYLAAIGRQLPSKQVGDITSELRDVLLSRVEDQEAALGR
                     PLERTELEALLIDFGNPLTVAGRYRKVQHLIGPEVFPYWWAGVKIALSIVLGVYLVLV
                     ILAAAMGKTNAEFRRTVPDIWYVAVYIFGMVTLVCAAIERTGKMQILLRWKPSRLPPA
                     VGKPRSRFEAAVAVTMDVIFILWWTGLIRFRDVLPQPYPRFITVEMAPVWAAWYWPIL
                     GYAVAEIAAKLVAVARPAWSVTNTAILTVRYLFGIAILLGVLAAGRWLVVGSGSIPPH
                     ALAIAQTNFDLGMRVGIIATIIGLGLGIALEAWRFYKIRQAMAPPTGA"
     gene            complement(1100..1441)
                     /locus_tag="VHN39_03050"
     CDS             complement(1100..1441)
                     /locus_tag="VHN39_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2815344.1"
                     /translation="MPTETEIFEALRLELRRGSLILAVLGHLRREHYGYTLRKALSDA
                     GVEIDEGALYPMLRRLETQGLLTSEWREEEKRNKRFYRLSAEGRAVLARLTEEWRSLN
                     ASVSDILKGES"
     gene            1552..2493
                     /locus_tag="VHN39_03055"
     CDS             1552..2493
                     /locus_tag="VHN39_03055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815345.1"
                     /translation="MRRLMFAGALALAMTLSLATAPTVAMAAAHKAAAAAKLEDHYAQ
                     NGAVKIHYVTEGKGPLVVLVHGFPDYWATWKPLMATLSAAGYRTAALDNRGYNLSDKP
                     QGEAAYAMPNLVGDVAAVVAAEGQKNTILIGHDWGASIAWNTTFQRPDLVNKLIIMAV
                     PHPSGLAREMATNKAQQAGSNYARNFQKEGSEKNLTAEGLANWVKDPKEKAAYIEAFK
                     RSDFGAMMNYYRANYPKGVGDTAAPPPTTPPVNVPVLVIHGMKDTALNAAGHNGTWDH
                     VTADTTILMIPTAGHFVQHDAEALVDRTVKDWLDARR"
     gene            2527..2682
                     /locus_tag="VHN39_03060"
     CDS             2527..2682
                     /locus_tag="VHN39_03060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815346.1"
                     /translation="MAKIDLFFVEELIEARKEQHGGLPGAPLVIDGHRVGTSISRSCI
                     VMLSAQL"
     gene            complement(3062..3454)
                     /locus_tag="VHN39_03065"
     CDS             complement(3062..3454)
                     /locus_tag="VHN39_03065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815347.1"
                     /translation="MAKDHLDAEAVRAAQGVLDAFMKAFNARDIPAFEETFNFPSVRL
                     ASQGLVIINKGDMKSERFTTGALAEWDHSAWDRREIIHAGPDKVHIDTRFTRYRKDGS
                     VIGGFDSIYVVTRQDGHWGIKIRSSFAP"
     gene            3610..5814
                     /gene="uvrB"
                     /locus_tag="VHN39_03070"
     CDS             3610..5814
                     /gene="uvrB"
                     /locus_tag="VHN39_03070"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEX2815348.1"
                     /translation="MSASFDYDENTMPLLWKPHRPARPDKSEGGHRFKLVSDYEPAGD
                     QLTAIPELVAGVNEREHDQVLLGVTGSGKTFTMAKVIELTQRPALILAPNKTLAAQLY
                     SEFKSFFPENAVEFFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRAILE
                     RDDVIVVASVSCIYGIGSVETYTAMTFTLEPGQQLDEKKLMGDLVAQQYKRNDAAFER
                     GTFRRRGDTIEIFPAHYEDRAWRISLFGDTIETITEFDPLTGKKTADLKGVKIYANSH
                     YVTPRPTLNQAISQIKDELKERLDWLVANGKLLEAQRLEQRTTFDLEMIQATGSCAGI
                     ENYSRYLTGRRHGEPPPTFFEYIPENALLFVDESHQTVPQIGGMYRGDYRRKFTLAEY
                     GFRLPSAMDNRPLKFEEWDAMRPDTVHVSATPGPWEMERTGGVFTEQVIRPTGLIDPP
                     VEIKPVSKGGFSQVDDVIDQVRQVAAQGYRSLITVLTKKMAEDLSEYMHEQGLRVRYM
                     HSDVDTLERIEIIRDLRLGAFDALVGINLLREGLDIPECGLVAILDADKEGFLRSETS
                     LIQTIGRAARNVDGRVILYADNITGSMERAMAETKRRREKQEEYNTLHGITATSIKSR
                     IKDILASPYERDRVTVPVGVAEDGSKPFLGDNFKATLRDLEGRMRAAASNLEFEEAGR
                     LRDEIKRLKMLDLEFANDILTAPGEAVDKTVVKRVKAEARAEAQERFRKGRL"
     gene            complement(5811..6563)
                     /locus_tag="VHN39_03075"
     CDS             complement(5811..6563)
                     /locus_tag="VHN39_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815349.1"
                     /translation="MSSQGHPARAPAAMRGVEALAVAALGNLWRSMDRLLPLWFALAV
                     FHALVHARAHTAADDIWPLQAILDNEASTLTALVVSALASAVAMRIFLGQARVALKPD
                     AAMGAYVGIFVLLGIAPVVILMGLHPPEPTAPASELHDAIVRAGFGVAMGMAMFWLSL
                     RLSLWPIGRLLDDRRVTAGQSWALMRGAVMRYAGAVSVIVAPMILINALVSLLTDHMP
                     LIHQAAIAPLNAAITLGATAVAAEVYRTRMNA"
     gene            6721..7065
                     /locus_tag="VHN39_03080"
     CDS             6721..7065
                     /locus_tag="VHN39_03080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815350.1"
                     /translation="MSRIIGRLTLAAGLAGALAAGSGAGAAVPSATFRVTNASNRVVE
                     CNLLVDGKTRTYLKVHVGKTYFDDFTVGRQLQLVCMRGVEGVYGPLKLGVDYRFVERD
                     GHHVAVVEGAAQ"
BASE COUNT         1331 a         2445 c         2336 g         1123 t
ORIGIN      
        1 tgtccgtata tcctcgcagg gaactgggag agcgtgcgga cgtgcgccac atcttgattg
       61 cgctagcggc gttggcggcc tcagtcatgg tgctcgccaa cgccgtccac ggcctctagc
      121 tcgggtcacg cgcccgtcgg cggggccatc gcctggcgaa tcttgtagaa gcgccaggcc
      181 tccagggcga tccccaggcc cagcccgatg atcgtggcga ttatgccgac gcgcattccg
      241 agatcgaaat tggtctgcgc gatggcgagc gcgtgtggcg ggatcgaccc ggagccgacc
      301 accagccagc ggccagcggc cagcaccccg agcaggattg cgatgccgaa caggtagcgg
      361 actgtcagga tggcggtgtt ggtcacggac caggccgggc gcgccaccgc gacgagtttc
      421 gccgcgatct ccgccaccgc gtagccaagg atcggccagt accatgccgc ccagacaggg
      481 gccatctcga ccgtgatgaa gcgcgggtac ggctgaggca gcacgtcacg gaaacggatc
      541 aggcccgtcc accacaggat aaagatcaca tccatggtga cggccaccgc cgcttcgaag
      601 cgcgagcgcg gcttgccgac ggcgggcggc aggcgcgagg gcttccacct gagcaggatc
      661 tgcatcttgc ccgtccgctc gatggccgcg cagaccagcg tcaccatgcc gaagatatag
      721 accgccacgt accagatatc cggcacggtc cgcctgaact cggcgttggt cttgcccatc
      781 gccgcggcca ggatgaccag cacgagatag acgcccagca cgatcgaaag cgcgatcttc
      841 acgccggccc accagtacgg aaacacctcc ggcccgatca ggtgctgcac cttgcggtag
      901 cggcccgcga cggtcagcgg attgccgaag tcgatcagca acgcttccag ttcggtgcgt
      961 tccagcggcc gaccaagagc ggcctcctgg tcctcgacgc gggagagcag cacgtcgcgc
     1021 agctcgctgg tgatatcgcc gacctgtttg ctcggcagtt ggcggccgat ggcggccagg
     1081 tagcgttcga tgaggtccat caggactccc ccttgagaat gtcggagacc gaggcgttga
     1141 gcgatcgcca ctcctcggtg aggcgcgcca gcacggcgcg accctcggcg gacaggcggt
     1201 agaagcgctt gttgcgcttc tcctcttcgc gccattcgct ggtcagcagc ccctgggtct
     1261 ccaggcgccg cagcatggga tagagcgcgc cttcgtcgat ctcgaccccg gcgtcggaga
     1321 gcgccttgcg cagggtgtac ccgtagtgct cgcggcgcag gtggcccagc acggcgagga
     1381 tcagggaccc gcggcgcagt tccaggcgaa gggcttcgaa gatctcggtt tcagtcggca
     1441 tgctgtgcgt catatactgt gtgccacaca ctgtctagca catagtatgt agctgcttgt
     1501 cgcttacgcc gtaaagggtg ttagggtcgc gcaaacggga ggcttccaga catgcgtaga
     1561 ttgatgttcg ccggcgctct ggccttggcg atgaccctgt ccctggccac ggcgccgacc
     1621 gtcgccatgg ccgccgcgca caaggccgcc gccgcggcga agctggagga ccactacgcc
     1681 cagaacggcg cggtgaagat tcactacgtc accgagggca agggcccact ggtggtgctg
     1741 gtccacggct ttcccgacta ctgggcgacc tggaagccgc tgatggccac gctttccgca
     1801 gccggatatc ggaccgcggc gctggacaac cgcggctaca acctctccga caagccgcag
     1861 ggcgaggccg cctacgccat gccgaacctg gtgggcgacg tggccgcggt tgtggccgcc
     1921 gagggccaga agaacacgat cctcatcggc cacgactggg gtgcgtcgat cgcctggaac
     1981 accaccttcc agcgcccgga cctggtcaac aagctgatca tcatggctgt gccccacccg
     2041 tccggcctgg cccgggagat ggcaaccaac aaggcccagc aggcgggctc caactacgcc
     2101 cgcaacttcc agaaggaagg ctcggagaag aacctcaccg ccgagggcct cgccaactgg
     2161 gtcaaggatc ccaaggaaaa ggccgcctac atcgaggcct tcaagcgctc cgacttcggc
     2221 gcgatgatga actactaccg cgccaactat cccaagggcg tgggcgacac cgcggccccg
     2281 ccgccgacga ccccgccggt caacgtcccg gtcctggtga tccatggcat gaaggacacc
     2341 gcgctcaacg ccgccggaca caacggcacc tgggatcacg tcaccgccga caccaccatc
     2401 ctgatgatcc ccaccgccgg ccacttcgtg cagcacgacg ccgaggccct ggtcgaccgg
     2461 acggtcaagg actggctcga cgcccggcgg taggccacag ctaccctttc aacgagggcg
     2521 tccgtcatgg cgaaaatcga cttgtttttt gtcgaagaac tcatcgaggc gcggaaggag
     2581 cagcacggcg ggcttcccgg agcgccgtta gtgatcgacg gccatcgcgt tggcacgtcc
     2641 atcagtcgga gttgtatcgt gatgctctcc gcacagcttt agacttacgt tgaagagtcc
     2701 ttcgtcgaag cgtcgcacgc ggttcttcct cagttgcgtg acgaagggcg ctatcgcgct
     2761 gcaatcggac ggtggggcaa cccgagcgcc gaaaacatca cccggttgtt tatgcgccta
     2821 ggtccggctg acatcctgca gggattgagt tggaagaact gcgccaacaa aacggtcaag
     2881 gcgcggctca atcagctgaa ccaagtacga aaccaggttg cgcatggaag cgagcgcctc
     2941 cgcatggatg gccaccctta ctcgctgagc ctgcaggaag tggtcctgtt caagaatttc
     3001 gttggccagt tctgcggtcg cttctcagtc cacgcatccg cgaaagtcca acgaacgcct
     3061 cttagggcgc gaagctggag cggatcttga tgccccagtg gccgtcctgg cgggtgacga
     3121 cgtagatcga gtcgaagccg ccgatcaccg aaccgtcctt gcggtaacgg gtgaagcggg
     3181 tgtcgatgtg caccttgtcg gggccggcgt ggatgatttc gcgccgatcc caggcggagt
     3241 gatcccattc ggccagcgcc ccggtggtga agcgctcgga cttcatgtcg cccttgttga
     3301 tgatcaccag gccctggctc gccaagcgca cgctgggaaa gttgaaggtc tcctcgaagg
     3361 ccgggatgtc gcgggcgttg aaggccttca tgaaggcgtc cagcaccccc tgagcggcgc
     3421 gcaccgcttc ggcgtcgagg tgatccttgg ccatgtccgt ctccctgtcg ccttcttcta
     3481 gaactgctga caacccactg tcagcaaccg cgtctcatag gctggcgttc ggcccgcgca
     3541 ccccctacct tgccgttcat ggcccgttct cccagccctg gtcccgccga cgaaggcggc
     3601 gtcgccgaca tgtcggcctc gttcgactat gacgagaaca ccatgccgct gctgtggaaa
     3661 ccccaccgcc cggccaggcc cgacaagtcc gaggggggcc accgcttcaa gctggtctcc
     3721 gactacgagc cggccggcga ccagctgacc gcgatcccgg aactggtggc cggggtcaac
     3781 gagcgggagc acgaccaggt gctgctgggg gtcaccggct ccggcaagac cttcaccatg
     3841 gccaaggtca tcgaactgac ccagcggccg gccctcatcc tggcccccaa caagacgctt
     3901 gccgcccagc tctacagcga attcaagagc ttcttcccgg agaacgccgt cgagttcttc
     3961 gtctcctact acgactacta ccagcccgag gcctacgtgc cgcggaccga cacctacatc
     4021 gagaaggata gctcgattaa cgagcagatc gaccggatgc gccactcggc gacgcgggcg
     4081 atcctggagc gcgacgacgt gatcgtggtg gcgtcggtct cctgcatcta cggcatcggc
     4141 tcggtcgaga cctacacggc catgaccttc acgctggagc ccggccagca actcgacgag
     4201 aagaagctga tgggcgacct ggtggcccag caatacaagc gcaacgacgc cgccttcgag
     4261 cgcggcacgt tccgccggcg cggcgacacc atcgaaattt tcccggccca ctatgaggac
     4321 cgcgcctggc ggatcagcct gttcggcgac accatcgaga cgatcaccga gttcgacccg
     4381 ctgaccggca agaagaccgc cgacctgaag ggcgtgaaga tctacgccaa ctcccactat
     4441 gtgacgccgc gcccgacgct caaccaggcc atcagccaga tcaaggacga gctcaaggag
     4501 cgcctcgact ggctggtggc caatggcaaa cttcttgaag cgcaacgcct cgagcagcgc
     4561 accaccttcg acctggagat gatccaggcc accggctcct gcgcggggat cgagaactac
     4621 agccgctacc tgaccgggcg ccggcacggc gagccgccgc cgaccttctt cgaatacatc
     4681 cccgaaaacg ccctgctgtt cgtggacgag agccaccaga ccgtgccgca gatcggcggc
     4741 atgtaccgcg gcgactaccg gcggaaattc accctggccg agtacggctt ccggctgccc
     4801 agcgccatgg acaaccgccc gctcaagttc gaggaatggg acgccatgcg tccggacacg
     4861 gtgcatgtgt cggccactcc gggcccctgg gagatggagc gcaccggcgg ggtcttcacc
     4921 gagcaggtga tccgccccac cggcctgatc gacccgccgg tggagatcaa gccggtctcc
     4981 aagggcggct tctcccaggt cgacgacgtc atcgaccagg tccgccaggt ggccgcccag
     5041 ggctaccggt cgctaatcac cgtgctcacc aagaagatgg ccgaggacct cagcgaatac
     5101 atgcacgagc agggcctgcg ggtccgctac atgcactccg acgtcgacac cctggagcgg
     5161 atcgagatca tccgggacct caggctcggc gccttcgatg cgctcgtcgg catcaacctg
     5221 ctgcgcgagg gtctcgacat cccggagtgt ggattggtgg cgatcctcga cgccgacaag
     5281 gaaggtttcc tgcgctcgga gacctcgctg atccagacca tcggccgggc ggcgcggaac
     5341 gtcgacggcc gggtgatcct ctacgccgac aacatcacag gctccatgga gcgcgccatg
     5401 gccgagacaa agcggcgccg cgagaagcag gaagagtaca acaccctcca cggcatcacc
     5461 gcgacctcca tcaagagccg catcaaggac atcctggcca gcccctacga gcgcgaccgg
     5521 gtcaccgtgc cggtgggcgt agcggaggac ggctcgaaac cgttcctggg cgacaacttc
     5581 aaggcgacgc tgcgcgacct ggagggccgc atgcgcgcag cggcgtcgaa cctggagttc
     5641 gaagaggccg gccggctgcg cgacgagatc aagcggctga agatgctcga cctggaattc
     5701 gccaacgaca tcctgacggc gccgggcgag gccgtggaca agaccgtggt caaacgggtg
     5761 aaggccgagg cgcgggcgga agcccaggaa cgcttccgta aagggcggct ctaggcgttc
     5821 atccgcgtgc ggtagacctc tgccgcgacc gccgtcgcgc cgagggtgat ggcggcgttc
     5881 aggggcgcga tggccgcctg gtggatcagc ggcatgtggt cggtgagaag gctcaccagg
     5941 gcgttgatca ggatcatcgg cgcgacgatc acgctcaccg ccccggcgta gcgcatgacc
     6001 gcgccgcgca tcagggccca ggactggccc gcggtcaccc gccggtcgtc cagcagccgc
     6061 cctattggcc agagcgacag gcgcagggac agccagaaca tcgccatgcc catcgccacc
     6121 ccgaacccgg cccggacgat ggcgtcgtgc agctccgagg ccggcgcggt gggctccggc
     6181 ggatgcagtc ccatcaggat caccaccggg gcgatcccca gcagcacgaa gatgcccaca
     6241 taggcgccca tggccgcatc cggcttcagg gccacgcgcg cctggcccag gaagatgcgc
     6301 atggccaccg ccgaggccag cgccgagacc accagcgccg tcagcgtcga ggcctcgttg
     6361 tcgaggatcg cctgcagcgg ccagatgtcg tcggccgcgg tgtgggcccg ggcgtggacc
     6421 agggcgtgga agacggccag cgcgaaccac aggggcaaga gccggtccat cgaacgccac
     6481 aggttgccga gcgcggccac ggccagcgcc tcgacgcccc gcatggccgc aggcgccctc
     6541 gccgggtgac cctgactgct caccgctcga accttttgct gctcatgcgg ccaagtctgc
     6601 ggcccggtgc ttcaacgcgg gattaagcga cgtggtcaag gcgccggtag gcctaccggg
     6661 cgttgactct gtccggccgg gcgccgaggc tggggccacg cagtctggag ggcttgaggc
     6721 atgtcgagga ttataggccg gttgaccctg gccgccgggc tcgccggcgc cctggccgcg
     6781 gggtccggcg ctggcgccgc cgtgccctcg gccacctttc gggtgaccaa cgcctccaac
     6841 cgcgtcgtgg aatgcaacct gctggtcgac ggcaagaccc ggacctacct caaggtccat
     6901 gtgggcaaga cctatttcga cgacttcacg gttggccgtc agctgcagct ggtctgcatg
     6961 cgcggcgtcg aaggcgtcta cggcccgctg aagctgggcg tcgactaccg gttcgtggag
     7021 cgcgacggcc accacgtcgc cgtggtcgag ggcgcggcgc aataggccgg cgtggccgta
     7081 agcctcgttt tcggacatga ccccaagcca tacccctcgg cgccaaggcg cgggatggcc
     7141 ggcgcttaac tgtccctggt tcaccgtgtc aaagagcttg cgttcgtgtt ttgttcacgg
     7201 taaacccggt tggccggaaa gtccagaatt tgagg
//
LOCUS       DATAJL010000164         2974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54108,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000164 DATAJL010000000
VERSION     DATAJL010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2974
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54108"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..204)
                     /locus_tag="VHN39_03085"
     CDS             complement(<1..204)
                     /locus_tag="VHN39_03085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815351.1"
                     /translation="MPTTTMAEAQEQALGIFADAVLKLALHIQQQALDAEDLDQKVRA
                     AGAVHRLGRGLRQTVALQAKLARD"
     gene            complement(344..997)
                     /locus_tag="VHN39_03090"
     CDS             complement(344..997)
                     /locus_tag="VHN39_03090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815352.1"
                     /translation="MRSTAGGQTSFSANIPTAGWAYPATAILKAGVMRRLLMYVAAGL
                     VWASSTQGGALQDENVLLPIPPGFKVGSQSSPRAGVTITEYVPASESVDNWSQMVTQQ
                     IFHGRKNDPPDGLPTFMSGGWKTACPGGAAQKLGEETANGYPAAVWAFICLRNPQTGK
                     PESMWIKVISGSDSLYSVQYAIRSDVTADAARSALAYLRGVTVCDTRRVDRSCPKGM"
     gene            1507..1926
                     /locus_tag="VHN39_03095"
     CDS             1507..1926
                     /locus_tag="VHN39_03095"
                     /inference="COORDINATES: protein motif:HMM:NF020397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEX2815353.1"
                     /translation="MSVHEQIDRYMADQSPAKSEELQDLHRRILEISPDAKLWFLDGR
                     NDEGKVVSNPNIGYGSETISYANGDSREFYKIGLSANTSGISVYVMGLDDRKYLAETY
                     GPRLGKAKVTGYCIKFRSVEDVDLGVLEEVVANAMGG"
     gene            complement(1955..2386)
                     /locus_tag="VHN39_03100"
     CDS             complement(1955..2386)
                     /locus_tag="VHN39_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1178 family protein"
                     /protein_id="HEX2815354.1"
                     /translation="MIRYALLCEHEHEFEGWFAASADFDDQQARGLIECPICGVKAVR
                     KAIMSPAVAGAKRGASDQTSAQTQVMMMEAMGRIRRHVEDTFDDVGDAFATEARAIHE
                     GRSEDRGIYGQATSAEVRDLVEDGVPIAPLPPEPIKKTELN"
     gene            complement(2383..>2974)
                     /locus_tag="VHN39_03105"
     CDS             complement(2383..>2974)
                     /locus_tag="VHN39_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEX2815355.1"
                     /translation="LIGSALVKRQDGKAANRSVLISPQGAIAATYDKLHMFDVDLPTG
                     ESARESATYEPGDRAVTAQAGALKLGVTICYDLRFPALYRALALAGAEVMTIPAAFTR
                     PTGAAHWEVLMRARAIETGSFVLAPAQGGKHEDGRGTYGHSIVVAPWGEVLAHLDHDE
                     PGVLLADLDLSAAAKARAAIPALANARAFAGPQPLR"
BASE COUNT          500 a          920 c         1007 g          547 t
ORIGIN      
        1 gtcgcgggcc agcttggcct gcagcgccac ggtctgccgc aggccccggc ccaggcgatg
       61 gaccgcgccg gccgcccgca ccttctggtc caggtcctcg gcgtccaggg cctgctgctg
      121 gatgtgcagg gcgagcttca agaccgcatc ggcgaatatg ccgagcgcct gttcctgagc
      181 ctccgccatg gtcgtcgtgg gcatgaacaa aacaagaaca tagaaatcgg cggaagtcaa
      241 attttatcgt gcgatgcgag ccgcgagcgg acttcgtcga tgtccgagat gggtggggag
      301 cggtcgttgg agtcacacca acccaacaag atggcggcag tctctacatg cccttcggac
      361 atgaacgatc cacgcggcgc gtgtcacaga cggtgacccc ccgcagataa gccagagctg
      421 atcgcgcggc gtcggcggtg acgtcgctcc ggatcgcgta ctgcacgctg tagaggctgt
      481 ccgacccgct gatcaccttg atccacatgc tctccggttt cccggtttgc ggattcctta
      541 ggcagatgaa ggcccagacc gcggctggat agccgttcgc tgtttcctcg ccgagttttt
      601 gcgccgcccc gcctgggcag gccgtcttcc agccgccgct catgaatgtc ggcaacccgt
      661 ccggcggatc gtttttcctg ccgtggaaaa tctgctgggt caccatctga gaccagttgt
      721 ccacgctctc gctcgccggc acgtattcag taatagtcac ccccgctcgc gggctgcttt
      781 gcgatccgac cttgaacccc ggagggatcg gcagcagtac gttctcgtcc tgcagcgcgc
      841 ctccctgcgt ggaggaagcc cacaccaaac ccgccgccac gtacatgagc agtctacgca
      901 tcacgcctgc tttcaaaatc gccgtcgccg gatacgccca accggcagtg gggatgttcg
      961 cgctgaagct ggtctggcct cctgcggttg atcgcatgca gtgaccctgc ggcatggcca
     1021 caaggtggca ggaaatgtcc gtaatgggtc gaaggcggtc tttgcccctt gcggctccgg
     1081 gtctagtctt gctcccaggc gagtggatga gagtcatgag cgacgccgtc ggccctggcg
     1141 atctggttct atgcgtcaac gcggccccaa accatgccac ggggaggccg gcgcccctgg
     1201 tggccggaga gacttaccgg gtcttcgcgg tcatggaatt tgcctgcccg tgcggacgtt
     1261 ccgatgcctt gctcgatgtg ggcgttgact tcgcgtggtg tcagacgcgc ttccgactcc
     1321 tgccgaagcc caaggcccag accaggacgc gccgcgtttc ggctcccaag gagacggaga
     1381 cggttcgctg aaggactttg aaatgcgatg tcggtttccg acacgctcgt tcgtcgtcct
     1441 gatgaggggc tggtgttcgc ggtctgagct gtggcctggc gaagatgaga aatggggatc
     1501 cttggcatga gcgtgcacga gcagatcgac aggtacatgg ccgatcagtc gccggcgaag
     1561 agcgaggaat tgcaggatct gcatcggcgc attctggaga tttcgccgga cgccaagctt
     1621 tggttcctgg atggcaggaa cgacgaaggc aaggtcgttt ccaatccgaa tattggatat
     1681 ggatcggaga cgatcagcta tgccaacggg gactcgagag agttctacaa gatcggcctg
     1741 agcgccaata cgtccggaat atcggtctac gtcatgggtc ttgatgacag gaaatacctg
     1801 gccgagacct atggtccccg gctcgggaag gccaaggtca ccggatattg catcaaattc
     1861 agatccgtag aggacgtcga tctcggcgtg ctcgaggagg ttgtcgcgaa cgccatgggt
     1921 ggctgagagc cggcgcagga gaagctcgag gcgctcagtt cagctcggtc ttcttgatcg
     1981 gctcgggcgg aagcggcgcg atcgggacgc cgtcttcgac caggtcgcgg acttcggcgg
     2041 aggtggcctg gccgtagatg ccgcggtctt cggagcggcc ctcgtggatg gcgcgggctt
     2101 cggtggcgaa ggcgtcgccg acgtcgtcga aggtgtcttc cacgtggcgg cggatgcggc
     2161 ccatggcctc catcatcatc acctgggtct gggccgaggt ctggtcggat gcgccgcgtt
     2221 tcgcgccggc caccgccggc gacatgatcg ccttgcgcac cgccttcacg ccgcagatcg
     2281 ggcattcgat gaggccgcgc gcctgctggt cgtcgaaatc ggcggaggcc gcgaaccagc
     2341 cttcgaattc atgctcgtgc tcgcagagga gggcgtagcg gatcatcgga gcggctgggg
     2401 tcctgcgaag gctctggcgt tggccagcgc cggaatggcg gcgcgggcct tggccgcggc
     2461 tgagaggtcg agatctgcca gcaaaacgcc gggctcgtca tggtccagat gagccaggac
     2521 ctcgccccag ggcgcgacaa cgatcgaatg accataggtt ccccgcccgt cctcgtgttt
     2581 gccgccctgg gcgggggcca ggacgaacga cccggtctcg atggcccggg cgcgcatcag
     2641 gacctcccag tgcgccgcgc cggtcgggcg ggtaaaggcg gcgggaatgg tcatgacctc
     2701 ggccccggcc agcgccagcg cgcggtagag ggccgggaag cgcaggtcgt agcagatggt
     2761 gacgccgagc ttcagcgcgc cggcctgggc ggtgacggcc cggtcgccag gctcgtaggt
     2821 cgccgattcc cgggcgctct cgccggtcgg caggtccacg tcgaacatgt gcagcttgtc
     2881 ataggtggcc gcgatcgcgc cctgcggcga gatcagcacc gagcggttgg cggccttgcc
     2941 gtcctgacgc ttcaccaggg ccgagccgat cagc
//
LOCUS       DATAJL010000165         2750 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_2796,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000165 DATAJL010000000
VERSION     DATAJL010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2750)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2750)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2750
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2796"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1565
                     /locus_tag="VHN39_03110"
     CDS             <1..1565
                     /locus_tag="VHN39_03110"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="GMC family oxidoreductase N-terminal
                     domain-containing protein"
                     /protein_id="HEX2815356.1"
                     /translation="VKPQSIKDTYDYVIVGGGASGSVIAGELSKTGAEVLVIESGPDD
                     SAPTISNPSIWFYNLGGPLNYGLPLKPAPEVNNRQIALALGHVLGGGGSINAMVWSRG
                     MARDYDAWAESGAKGWAFKDVLPMFKAQEDWEGGANEWRGAGGPIHIRRPRDPHPTAR
                     AVIEAAGQMGFALLDDMNGPMADGVGYINMNIAADGTRVSAARAFLHPNLGRANLTLL
                     LNTDVTKVLFDGDRATGVQIVAGDGVRTVSASREVILATGSVHTAQLLMLSGVGEASE
                     LKALGIHAVADLRGVGRNFQDHVHLSGVVCEYKGAFPPHGADSDAVEAEVNMSTGVDG
                     HGTDMVLVLEQLANASPELVARHGAPLPEACFTISPSLVQPTSRGRVTLASADFRDKP
                     IIAPNFLGTDRDLEATLRGAEAARELVSQKAFDGIRDAELVPGPNAKTRADMIEFVRL
                     GTSSFGHPIGTARMGSGPDAVVDSELRVHGLRGLRVADASIMPSIPSAATNAAVIMIA
                     GRAAELIRADIR"
     gene            1562..2002
                     /locus_tag="VHN39_03115"
     CDS             1562..2002
                     /locus_tag="VHN39_03115"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2815357.1"
                     /translation="MTPAASDAYLKAAGTYFAAVDSGRMPDELFAPDFEFFFPKYGVG
                     QGIAELQEFATGLWEAGLKVTHHRDQLKYIVCGAQVIVEGVTFGHDKAGVSWDGGKTP
                     GGRFCSVFDFNAKGLIQRMYVYMDPDYTAADKERLRWNRANPRW"
     gene            complement(2052..>2750)
                     /locus_tag="VHN39_03120"
     CDS             complement(2052..>2750)
                     /locus_tag="VHN39_03120"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate binding domain-containing protein"
                     /protein_id="HEX2815358.1"
                     /translation="AEGEAAEAEGIANAAAPRGHIRLAAPMSFGVLRIAPILPEFLER
                     FPEISIDLHLSDAHVDLIGEGFDAAIRIASLPDSSLLARTLAPVHRYLVASPAYLAEH
                     GRPSHPLRLSEHRCIGYVSTVGDTWHFSHEQGDTATVRPTGPLRVNNGDAMMPLLIGG
                     SGLGILPDFIIRDALEDGRLVVVLPDWKVSGGAVHWVSPPGGRRPKRVDALSEFIAEK
                     LSSRRSRPSEPAPA"
BASE COUNT          455 a          898 c          978 g          419 t
ORIGIN      
        1 cagtaaagcc gcagtcgata aaggatacgt acgactacgt cattgtcggc ggcggggcct
       61 ccggctcggt catcgccgga gaattgtcaa agacgggggc cgaggtcctg gtgatcgagt
      121 ccgggccgga cgactcggcg ccgacgatca gcaatcccag catctggttc tacaatctgg
      181 ggggaccgct gaactatggc ctgccgctga agccggcgcc ggaggttaac aaccgccaga
      241 tcgcgctggc gctcggccac gtgctggggg gcgggggctc gatcaacgcc atggtctggt
      301 cccggggcat ggcgcgggac tacgacgcct gggccgaaag cggagccaag ggttgggcgt
      361 tcaaggatgt cctgccgatg ttcaaggcgc aggaggactg ggagggcggc gccaacgagt
      421 ggcgcggcgc cggcgggccg atccacatcc ggcggccgcg cgatccgcat ccgaccgccc
      481 gcgccgtcat cgaggcggca gggcagatgg gctttgcctt gcttgacgac atgaacgggc
      541 cgatggccga cggcgtcggc tacatcaaca tgaacatcgc ggccgacggc acacgcgtca
      601 gcgccgccag ggcattcctg catccgaacc tcggccgggc gaacctgacg ctgctgctga
      661 acacggacgt cacgaaggta ttgttcgacg gcgaccgggc gaccggcgtc cagatcgtgg
      721 caggggacgg cgtgcgaacc gtttcggcga gccgcgaagt catcctggcg accggttcgg
      781 tgcacacggc ccaacttctg atgctgtcgg gcgtgggcga ggcgagcgag ctgaaggcgc
      841 tcgggattca cgcggtcgcc gacctacgcg gcgtgggccg caatttccag gaccatgtgc
      901 acctgtccgg cgtcgtctgc gagtacaagg gcgctttccc gccccatggc gcggacagcg
      961 acgcggtcga ggccgaagtg aatatgtcga ccggggtcga cggccacggc accgacatgg
     1021 tcctcgtcct ggagcagctt gccaatgcct cgccggaact ggtggcgcgt catggcgccc
     1081 cgctgccgga ggcctgcttc acgatctcgc cgtcgctggt tcagccgacc agccgcgggc
     1141 gggtgacgct cgcgagcgcg gacttccgcg ataagccgat catcgcgccg aacttcctgg
     1201 gcaccgaccg cgatctggaa gcgaccctca gaggagcgga agcggcgcgt gagctggtga
     1261 gccagaaggc ctttgacgga atccgcgacg ccgaactcgt ccccggtccg aacgccaaga
     1321 cgagagcgga catgatcgag ttcgtgcggc tcgggaccag cagcttcggc cacccgatcg
     1381 gcacggcgcg gatgggcagc ggcccggacg ccgtcgtcga cagcgaactt cgcgtccacg
     1441 gtctgcgtgg cctgcgcgtg gcggacgcct cgatcatgcc gtccattccc tccgccgcca
     1501 ccaatgccgc ggtgatcatg atcgccggcc gcgcggccga actcatccgg gcggacatcc
     1561 gatgacgccc gcggccagcg acgcgtacct gaaggccgcc gggacctact tcgcggcggt
     1621 ggattccggg cgcatgccgg acgagctctt cgcgcccgat ttcgagttct tcttcccgaa
     1681 gtatggcgtg ggtcagggga tcgcggagct tcaggaattc gccaccggcc tttgggaagc
     1741 ggggctcaag gtcacccacc atcgcgacca gctgaagtac atcgtctgcg gcgcccaggt
     1801 gatcgttgaa ggcgtaacct tcggccatga caaggccggt gtgtcttggg atggcggaaa
     1861 gacccccggc gggcgcttct gcagcgtctt cgatttcaac gccaaggggc tgatccagcg
     1921 gatgtatgtc tacatggatc cggactacac ggccgcggac aaggagcgtc ttcgttggaa
     1981 ccgggccaac cctcgctggt aggcaaggcc aggcccgggc tttccccgca catccgaggt
     2041 cttcggccgg ctcaggccgg ggcgggctcg gacggccggc tgcggcgcga cgacagtttc
     2101 tcagcgatga actcgctcag ggcgtcgacc cgcttgggcc gccggccgcc gggcggggag
     2161 acccagtgca ccgcgccgcc gctgaccttc cagtccggca gcaccaccac caagcggccg
     2221 tcctcgagcg cgtcgcggat gatgaaatcg ggcaggatac ccagcccgct gccgccgata
     2281 aggagcggca tcatggcgtc gccgttgtta acgcgcagcg gccccgtcgg gcgcaccgtc
     2341 gcggtgtcgc cctgctcatg gctgaaatgc caggtgtctc cgacggtcga gacgtagccg
     2401 atgcagcggt gctccgacag gcgcagcgga tggctcggcc gcccgtgttc tgcgaggtac
     2461 gccggggacg ccaccaggta gcgatgaacg ggcgccaagg tgcgcgccag gagcgaagag
     2521 tcgggcaggc tggcgatgcg gatggcggcg tcgaacccct cgccgatcag gtcgacatgg
     2581 gcgtcgctga ggtgcaggtc gatcgagatc tccggaaagc gctccaggaa ttcggggagg
     2641 atcggcgcga tccgcaggac gccgaaggac atgggcgccg ccagtcggat gtgtccgcgc
     2701 ggcgccgcgg cgttggcaat gccttcggct tcggcggctt ccccttccgc
//
LOCUS       DATAJL010000166         6182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28431,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000166 DATAJL010000000
VERSION     DATAJL010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6182
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28431"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /locus_tag="VHN39_03125"
     CDS             <1..362
                     /locus_tag="VHN39_03125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="methanol dehydrogenase"
                     /protein_id="HEX2815359.1"
                     /translation="MEQGVIDGAEALIGQVGLPEDQAKANVAQAAAHPVQVHESGGLR
                     PHIPVFFIILIVFWVISGLLRAGGRRGGLGGLWWLPFMFMGGGRGGGGGGFGGGGGGG
                     FSGGGGSFGGGGSSGSW"
     gene            362..1063
                     /locus_tag="VHN39_03130"
     CDS             362..1063
                     /locus_tag="VHN39_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HEX2815360.1"
                     /translation="MKALSPSDLAAIEAAVRAAEVRTTGEIYCVVTEESGHYGETPLA
                     WAAGVALLGPAILLAAGVHVTIPDLFSSWSASEVGAAIETAVRRALIGAIVVQGLLFV
                     ATAVIVSIPAVRRMLTPRSVKRHQVHRRAAEQFAAKGLHLTRERTGVMIFVSLGERMA
                     ELIADDGIADHVDAHVWDKAMAALADGMKRGDVEAGFAAAVGLCGEVLAEKFPARPGD
                     NPNELPDAVVVLPKH"
     gene            1361..2737
                     /locus_tag="VHN39_03135"
     CDS             1361..2737
                     /locus_tag="VHN39_03135"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX2815361.1"
                     /translation="MSASVEELGAGNAIVRPAADANALGMAFILECRPDGSRRFLFAG
                     PRCLGVNGVTGEAAMTDAALVLDRILPEHRAAFDAAEAEARATLTPFDIEVAMYGANS
                     EVCWRRFASLPRAQPDGSVLWDGLEIDVTDRRTMAAELVEQHRRLEVAVEAAGLGFWE
                     WEVGAGKVTWSEHNKALYGLPPDAEVSVQSYLEMVHPEDVEAVRSAFLAARDKPEGGD
                     YSIEHRIVTASGEQRWIAARARVANDPSGETRLVVGTSLDITDSKAAEERRALLMGEL
                     AHRAKNGIAVIMAIVSQTARGAETVEGFHGQIMSRLQAMANSQDLVTASGGRPVSLTD
                     VIAQALSPFGQGRVDLDPAIAEVTIRGEMAVGMGLLLHEMATNAVKYGALSNSRGRVA
                     ITLETAAEDRAAFAWRETDGPPVTPPETPGFGTRLLQQVLRPQGGEVKFQFEPQGFWA
                     RTEFPTVR"
     gene            2816..3280
                     /locus_tag="VHN39_03140"
     CDS             2816..3280
                     /locus_tag="VHN39_03140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX2815362.1"
                     /translation="MAFKLNVNGKVLEADVDPDTPLLWTLRDSLGITGPKYGCGIGAC
                     GACTVHIDGKPTRSCVYPVSAVGAAKVTTIEAMADHPIGKKVQAAWMDLDVAQCGYCQ
                     PGQIMAATALLAAKPKPTDADIDSAMTNICRCATYTRIRAAIKQASGQPVKA"
     gene            3285..5486
                     /locus_tag="VHN39_03145"
     CDS             3285..5486
                     /locus_tag="VHN39_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEX2815363.1"
                     /translation="MTLELPILTNGAASRRDFMKASVIGGGLVLAFNIAPKAEAAETA
                     GAQALNAYVRVAPNGIVTIMAKNPEIGQGVKTSLPMMIAEELDVAWENVRIEQADCDP
                     KLYTRQFAGGSLATPMNFDDLRKVGAVARAMLVNAAAVAWNCPSGECKTAAGQVIHVS
                     TGRKASYGSLASQCAGAAIPDPKTITLKNPKDYKIIGKATPQYDTKKIVTGQPLFGID
                     VRVPGMLYATYEKAPVFGAKVASANLDAARAVKGVKKVFVVDGGTRLDGLLPGVAVVA
                     DSWWAARKGRNALQTKWADHPTSSQSSAGFDKRAAELNAGAPMTSLRKDGDVDAALKG
                     AAKTVEAAYSYPFIAHAPLEPQNTTAHFKDGKLEIWAPSQNPEPGRQLVATTLGIKAD
                     DITVHMTRCGGGFGRRLSNDYMVEAAWIAREAGAPVKLLWTREDDMHHDLYRPAGYHY
                     FKGGVDAAGNVVAWQDHFVTFGEGDKVASSAGMGGTEFPSRFVPNCKIDQSTISLGVP
                     TGPMRAPGSNALAFVNQSFIDELAHAAGADPLAFRMKLLGDKAMVGDGPSGYNAGRMK
                     GVLAAVEKMSDWAGRSKLPAGTAMGVAFHYSHMGYFAEVVQTTVAKTGAIKVDKVWVA
                     ADVGRQIVNPAGAMNQVQGAALEGLSHALYQKITIENGAAKQSNFADYPLLKMAAAPP
                     VEVKFVITDYTPTGLGEPALPPVIPALCNAIFAATGKRIRSLPIDTKQLAT"
     gene            5581..>6182
                     /locus_tag="VHN39_03150"
     CDS             5581..>6182
                     /locus_tag="VHN39_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEX2815364.1"
                     /translation="MQKLLIANRGEIAVRIARTAAEMGVATVAVYSEDDAASLHTRKA
                     DEAVGLKGSGPAAYLDIVQVAAAAKAAGCDAVHPGYGFLSENAAFARACAAAGLTFVG
                     PTPETLELFGDKGRARALAQQCDVPVLVGTNRPTTLEEARAFFDGPAHGAVMVKAVAG
                     GGGRGMRPVTQASELAAAFERCASEAKAAFGNGDLYVERFL"
BASE COUNT         1000 a         2077 c         2185 g          920 t
ORIGIN      
        1 atatggagca gggcgtgatt gacggggccg aggccctgat cggccaggtg ggcctgccgg
       61 aagaccaggc caaggccaac gtcgcccagg ccgcggccca tccggtccag gtccacgaga
      121 gcggcggctt gcgcccgcat atcccggtat tcttcatcat cctgatcgtc ttttgggtaa
      181 tctcgggcct gttgcgcgcc ggtgggcgtc gcggtggcct gggcggtctg tggtggctgc
      241 cgttcatgtt catgggcggc ggacgtggcg gcggcggcgg cggatttggc ggcggcggtg
      301 gtggcggctt ctccggcggc ggcggctcgt tcggcggcgg cggttcgtcg gggagctggt
      361 gatgaaagcg cttagtccct cagacctggc cgccatcgag gccgcggtgc gcgccgcgga
      421 agtccgcacc accggcgaga tctactgcgt cgtcaccgag gagagcgggc actacggcga
      481 aaccccgctc gcctgggccg ccggcgtggc cctgctgggc ccggccatcc tgctggcggc
      541 cggggtgcac gtgaccatcc cggacctgtt ctcgagctgg agcgcctcgg aggtcggggc
      601 cgcgatcgag accgcggtgc gccgcgccct gatcggggcc atcgtcgtcc agggcctcct
      661 gttcgtggcc acggccgtga tcgtctcgat tccggcggtg cgccgcatgc tcaccccgcg
      721 cagcgtcaaa cgtcatcagg tgcatcgccg ggccgccgag cagttcgcag ccaagggcct
      781 gcacctgacc cgcgagcgca ccggagtgat gatcttcgtc tcgctgggag aacggatggc
      841 cgagctgatc gccgacgacg gcatcgccga tcacgtggac gcccatgtct gggacaaggc
      901 catggcggcg ctcgccgacg gcatgaagcg cggtgacgtc gaggcgggtt tcgccgccgc
      961 ggtcgggctc tgcggcgagg tgctggcgga gaaattcccg gccaggcccg gcgataaccc
     1021 taacgagttg ccggacgcgg tggtggtgct gcccaagcac tagtgtgctg gatttgaagt
     1081 tcgccgcatt cagggccaca cgccgagcga acttcaaatc caaagaagca cactagaaac
     1141 ataggcttgc tggtgtccta atcgattccg aagttcgtcc ggcgccagcc gcaagcgctt
     1201 gcgaacttcg aaatcgggac actgggccga ggcccgactg gccgccttgg gtcgatcggc
     1261 cgcacgtggt tacgccaacc tcaaccatag ttcttctggt attgccccag gctacgggcc
     1321 gcgggagatt gcgggccggt tgggcgggac gcagaagctg gtgagtgctt cggtggaaga
     1381 gttgggcgcg ggaaacgcca tcgtgcggcc agcggccgac gcgaacgccc tcggcatggc
     1441 gtttattctg gagtgccggc ccgacggctc gcggcgcttc ctgttcgccg gcccccgctg
     1501 cctgggggtg aacggcgtca ccggcgaggc ggccatgacc gacgccgccc tggtcctcga
     1561 ccggatcctc cctgagcacc gcgccgcctt cgacgccgcg gaggccgagg cgcgggccac
     1621 cctgaccccc ttcgatatcg aggtcgccat gtatggcgcc aacagcgagg tgtgctggcg
     1681 gcggttcgcc tcgctgccac gcgcccaacc cgatggctcg gtgctttggg acggcctcga
     1741 gatcgacgtc accgaccgcc ggaccatggc cgccgaactg gtcgaacaac accgccgcct
     1801 ggaggtggcc gtggaggccg cgggtctcgg gttctgggag tgggaagtgg gcgccggcaa
     1861 ggtcacgtgg tcggagcaca acaaggccct ctatggcctg ccgcccgacg cggaggtctc
     1921 cgtccagagc tatctggaga tggtgcatcc cgaggatgtg gaggcggttc gctcggcctt
     1981 cctggcggcg cgcgacaagc cggagggcgg cgactactcc atcgagcacc gcatcgtcac
     2041 ggcgagcggg gagcagcgct ggatcgcggc gcgtgcgcgc gtggccaacg acccgtcggg
     2101 ggagacccgg ctggtggtcg gcacctcgct ggacatcact gacagcaagg ccgccgagga
     2161 gcgccgcgcg ctcttgatgg gcgagctggc gcatcgggcc aagaacggca tcgcggtgat
     2221 catggccatc gtgagccaga ccgctcgcgg cgccgagacg gtggagggtt tccacgggca
     2281 gatcatgtcg cgcctgcagg ccatggccaa ttcccaggat ctggtcaccg cctcgggcgg
     2341 ccggcccgtg agcctgaccg acgtgatcgc ccaggcgctg tcgcccttcg gccaggggcg
     2401 cgtcgacctc gatccggcga tcgccgaggt caccatccgc ggcgagatgg cggtgggcat
     2461 gggcctgttg ctgcacgaga tggccaccaa cgccgtgaag tatggcgcgc tctccaacag
     2521 caggggccgg gtggcgatca cgctggagac cgcggctgag gaccgcgcgg ccttcgcctg
     2581 gcgcgagacg gacggcccgc cggtgacacc gccagagact cccggcttcg gaacccgcct
     2641 cctgcagcag gtgctgcgcc cgcagggcgg cgaggtgaag ttccagttcg agccgcaggg
     2701 cttctgggcg cggacggagt tcccgaccgt taggtagatc aactacataa cgctcttttc
     2761 ttgctgcggc gccccttgcg gcggtagttt ccgccaacgg tttagggaga gcgacatggc
     2821 tttcaagctc aacgtcaatg gcaaggtcct ggaggccgac gtcgacccgg acaccccgtt
     2881 gctctggacg ctgcgcgaca gcctcgggat caccgggccg aagtacggat gcggcatcgg
     2941 cgcctgcggc gcctgcacgg tccatatcga cggaaagccg acccgcagtt gtgtctatcc
     3001 ggtctccgcg gtcggtgcgg ccaaggtcac gacgatcgaa gccatggccg accacccgat
     3061 cggcaaaaag gtgcaagccg cctggatgga cctggacgtg gctcagtgcg gttattgcca
     3121 gcccggccag atcatggccg cgacggcgct gctcgccgcc aagcctaaac cgaccgacgc
     3181 cgacatcgat tccgcgatga ccaacatctg ccgctgcgcg acctacacgc gcatccgcgc
     3241 cgccatcaaa caggcctccg gccaacccgt gaaggcgtaa gaccatgacc ctggaactgc
     3301 caatcctgac aaacggggcc gcctcgcgcc gcgacttcat gaaggcctcc gtgatcggcg
     3361 gcggcctggt gctggccttc aacatcgcgc ccaaggccga ggcggccgag accgccggcg
     3421 cccaggcgct caacgcctat gtgcgcgtgg cgcccaacgg tatcgtcacc atcatggcga
     3481 agaacccgga gatcggtcag ggcgtgaaga cctccctgcc gatgatgatc gccgaggagc
     3541 tggacgtcgc ctgggagaac gtccgcatcg agcaggccga ttgcgatccc aagctctaca
     3601 cccgccagtt cgccggcggc agcctggcga cgcccatgaa cttcgacgac ctgcgcaagg
     3661 tcggcgccgt ggcgcgcgcg atgctggtca acgccgcggc ggtcgcctgg aactgtccgt
     3721 ccggcgagtg caagacggcc gcgggccagg tgatccacgt ctcgacgggc cgcaaggcca
     3781 gctacggctc gctggccagc cagtgcgccg gtgcggcgat tccggacccc aagacgatca
     3841 cgctgaagaa ccccaaggac tacaagatca tcggcaaggc gacgccgcag tacgacacca
     3901 agaagatcgt caccggccag cccttgttcg gcatcgatgt tcgcgtgccg ggcatgctct
     3961 acgcgaccta cgaaaaggcg ccggtgttcg gggccaaggt ggccagcgcc aacctggacg
     4021 ccgcacgcgc ggtcaagggc gtgaagaagg tcttcgtggt cgatggcgga acccggctcg
     4081 acggcttgct gccgggcgtg gcggtggtgg ccgacagctg gtgggcggcg cgcaagggcc
     4141 gcaatgcgct gcagaccaag tgggcggatc atccgacgtc cagccagtcg agcgcgggct
     4201 tcgacaagcg ggccgccgag ctcaacgccg gcgcgccgat gaccagcctg cgtaaggacg
     4261 gcgacgtgga cgccgccctg aagggcgcgg ccaagacggt tgaggccgcc tattcctacc
     4321 cgttcatcgc ccacgcgccg ctggagcccc agaacaccac cgcccacttc aaggacggca
     4381 agctggagat ctgggcgccg agccagaacc ccgagcccgg ccgccagctg gtggccacga
     4441 cgctggggat caaggccgac gacatcacgg tccacatgac ccgctgcggc gggggcttcg
     4501 ggcgcaggct ctccaacgac tacatggtgg aggccgcctg gatcgcgcgg gaggccggcg
     4561 cgccggtgaa gctgctctgg acccgcgaag acgacatgca ccacgacctc taccggcccg
     4621 ccggctatca ctatttcaag ggcggggtgg acgcggccgg gaacgtcgtc gcctggcagg
     4681 accacttcgt gaccttcggc gagggggaca aggtggcttc cagcgccggc atgggcggga
     4741 ccgagttccc gtcgcgtttc gtgcccaact gcaagatcga ccagtcgacc atctcgctgg
     4801 gcgtgccgac cgggccgatg cgggcgccgg gctccaatgc gctcgccttc gtgaaccaga
     4861 gcttcatcga cgagctggcc catgcggcgg gcgccgatcc gctggcgttc cgcatgaagc
     4921 tcctgggcga caaggcgatg gtgggcgatg ggccctccgg ctacaacgcc gggcgcatga
     4981 agggcgtgct ggccgccgtc gagaagatgt cggactgggc gggccgttcg aagctgccgg
     5041 ccggcacggc catgggcgtc gccttccatt acagccacat gggctatttc gccgaggtgg
     5101 tgcagacgac cgtcgccaag accggcgcca tcaaggtcga caaggtctgg gtcgccgccg
     5161 acgtgggacg ccagatcgtc aatccggccg gcgccatgaa ccaggtgcag ggcgcggcgt
     5221 tggagggcct ctcccacgcc ctctaccaga agatcaccat cgagaacggg gcggccaagc
     5281 agtcgaactt cgccgactat ccactcctga agatggccgc ggccccgccg gtggaagtga
     5341 aattcgtgat caccgactac acgccgacgg gcctgggaga accggcgctc ccaccggtga
     5401 tcccggcgct ctgcaacgcg atcttcgccg ccacgggcaa acgcatccgc tcgctgccga
     5461 tcgatacgaa gcagctggcg acgtaagaac cgctcattgc gcttggactt gagcggaagg
     5521 tcggcatgat gtccccgagg cggcgccaag accgctcgcg caacgctggg gacggtttac
     5581 gtgcagaagc ttctgatcgc caaccggggc gagatcgccg tccgcatcgc ccgcacggcc
     5641 gccgagatgg gcgtggccac ggtggcggtc tattccgaag acgacgcggc ctcgctgcac
     5701 acccgcaagg ccgacgaggc ggtgggcctg aagggctcgg gacctgcggc ctatctcgac
     5761 atcgtccagg tcgcagccgc agcgaaggcc gcgggctgtg acgccgttca cccgggctac
     5821 ggattcctct ccgagaacgc cgcctttgcg cgcgcctgcg ccgcggcggg cctgaccttc
     5881 gtcgggccca cgccggagac cctggagctg ttcggggaca agggccgggc ccgcgcgctc
     5941 gcccagcaat gcgacgtgcc ggtgctggtc gggaccaaca ggcccacgac cctggaggag
     6001 gcgcgggcct tcttcgacgg tccggcgcat ggtgctgtga tggtcaaggc ggtcgccggc
     6061 ggcggcgggc gcggcatgcg gccggtgacg caggcgtccg agctggcggc ggcgttcgag
     6121 cgctgcgcgt ccgaggccaa ggcggccttc ggcaacggcg atctctacgt cgagcgcttc
     6181 ct
//
LOCUS       DATAJL010000167         1528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41567,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000167 DATAJL010000000
VERSION     DATAJL010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41567"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..524
                     /locus_tag="VHN39_03155"
     CDS             <1..524
                     /locus_tag="VHN39_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2815365.1"
                     /translation="VLVRGPALGMKYAAPLMLERGAGSIINTASIAGLQAGWGPIAYS
                     SAKAAVIHMSRCAAAQLSPKKIRVNAICPGLIGTSIFGASIGLSRDVADQMAARFAEN
                     AAKVQPAPKAGAPEDIARAALYLASDDSEFVTGTHLVVDGGITVGAAHSWDPEAQSPF
                     SALFPEMGSLASD"
     gene            complement(521..958)
                     /locus_tag="VHN39_03160"
     CDS             complement(521..958)
                     /locus_tag="VHN39_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkvA family protein"
                     /protein_id="HEX2815366.1"
                     /translation="MSGPEKASPYVNGTCSPADAEKGGPLDPSHALVPHIMRLNEQRV
                     VRGFWPKMRKVAALVPFASEALAVWYCARDEETPVAAKGMMFAALAYFVMPFDAIPDF
                     IAGIGYTDDAAVFMAMLALVGKNLKPRHRAAAKAAVARLREQA"
     gene            1017..>1528
                     /locus_tag="VHN39_03165"
     CDS             1017..>1528
                     /locus_tag="VHN39_03165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815367.1"
                     /translation="MKLNSSVAAVVTGGASGLGEATVRALAAEGVKVAIFDMNEAKGE
                     AVAKEVGGVFCKCNVTSDEDVDAAFAKARAAHGQERILVNCAGTGNAAKTASRDKQTG
                     ETKHFPLDAFNLIIQINLVGTFRCIAKSAKGMLDLEPVDGERGAIVNTASVAAEDGQM
                     GQAAYSASKGG"
BASE COUNT          260 a          538 c          505 g          225 t
ORIGIN      
        1 atgtgctggt gcgagggccc gcgctcggca tgaagtacgc cgcgcccctg atgctggagc
       61 gcggcgcggg ctcgatcatc aacaccgcct cgatcgccgg cctgcaggcc ggctggggcc
      121 ccatcgccta ttcctcggcc aaggccgcgg tgatccacat gagccggtgc gccgcggccc
      181 agctgtcgcc gaagaagatc cgggtgaacg ccatctgtcc gggcctgatc ggcacctcga
      241 tcttcggcgc ctccatcggc ctgtcgcgcg atgtggccga ccagatggcc gcccggttcg
      301 cggagaacgc agccaaggtc cagcccgcgc ccaaggccgg cgcgccggag gacatcgcca
      361 gggccgccct ctatctcgcc agcgacgatt ccgaattcgt caccggcacg cacctggtgg
      421 tggacggcgg catcaccgtc ggcgccgcgc acagctggga ccctgaggcg caatcgccct
      481 tctcggcgct gttcccggaa atgggatcgc tggccagcga ttaggcctgc tcgcgcagcc
      541 gcgccacggc cgccttggcc gccgcgcgat ggcggggctt caggttcttt cccaccagcg
      601 ccagcatggc catgaacacc gcggcgtcgt cggtgtagcc gatgccggcg atgaaatcgg
      661 ggatcgcatc gaacggcatg acgaaatagg cgagcgcggc gaacatcatc cccttggccg
      721 ccaccggggt ttcctcgtca cgggcgcaat accagacggc cagcgcctcg gaggcgaagg
      781 ggaccaaggc ggcgaccttg cgcatcttcg gccagaaccc gcgcaccacc cgctgttcgt
      841 tcagccgcat gatgtgcggg accagcgcgt ggctagggtc gagcggcccg cccttttcgg
      901 catcggccgg actgcaggtt ccgtttacgt aaggtgacgc tttttcaggg ccgctcatcg
      961 gtttaaagcc tcggaccaac tcttaggcag ataacgagat cgggagcgcc acgtccatga
     1021 aactcaattc ctccgtcgcc gcggtcgtca ccggcggcgc ctcgggcctc ggcgaagcca
     1081 cggtccgcgc gctcgccgct gagggcgtca aggtcgccat cttcgacatg aacgaggcca
     1141 agggcgaggc ggtcgccaaa gaggtcggcg gcgtcttctg caaatgcaac gtgacgagcg
     1201 acgaagatgt cgacgcggct ttcgccaagg cccgcgccgc ccacggccag gagcggatcc
     1261 tggtcaactg cgccggcacc ggcaacgccg ccaagaccgc cagccgcgac aagcagaccg
     1321 gcgagaccaa gcacttcccg ctcgacgcct tcaacctgat catccagatc aacctggtcg
     1381 gcaccttccg ctgcatcgcc aagtcggcga agggcatgct ggacctagag ccggtcgacg
     1441 gcgagcgtgg ggccatcgtc aacaccgcca gcgtcgcggc cgaggacggc cagatgggcc
     1501 aggcggccta ttcggcgtcc aagggcgg
//
LOCUS       DATAJL010000168         2254 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91438,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000168 DATAJL010000000
VERSION     DATAJL010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91438"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..787)
                     /locus_tag="VHN39_03170"
     CDS             complement(<1..787)
                     /locus_tag="VHN39_03170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrilase-related carbon-nitrogen hydrolase"
                     /protein_id="HEX2815368.1"
                     /translation="MKSVKTSGSRPFHAIHSHGFVRVAACTPAVAVGDPGFNAAQTLA
                     LAKDGHARGCDLMLFPELGLSAYAIDDLFLQDALLRRVEAEIEGLVAASNDLAPVLIV
                     GAPVEHSGALYNCAVVIARGRILGVIPKSFLPNYREFYENRWFAPGAGVTGLTTRLAG
                     QDAPFGTDLVFEATDLTDFSFAAEICEDFWSPTPPSTRAALAGALILCNLSASNIVVG
                     KADDRELLCASQSMRCMAAYLYSAAGPGESTTDLAWDGQATIHE"
     gene            complement(916..1344)
                     /gene="dksA"
                     /locus_tag="VHN39_03175"
     CDS             complement(916..1344)
                     /gene="dksA"
                     /locus_tag="VHN39_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019899 - enzyme binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HEX2815369.1"
                     /translation="MKAAEVLADRPVYRPSEDEVFMSERQLEYFKQKLMDWKEDILRE
                     SGETLKHLQSETENHPDLADRASSETDRSLELRTRDRQRKLISKIDEALRRIEDGSYG
                     YCEETGEPIGVARLDARPIATLSLEAQERHERRERVHRDD"
     gene            complement(1438..1869)
                     /locus_tag="VHN39_03180"
     CDS             complement(1438..1869)
                     /locus_tag="VHN39_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliX"
                     /protein_id="HEX2815370.1"
                     /translation="MKVTGPSGIGSSSGARPARSAGGDGFRIITPGPAGGASQASSVS
                     ATQGVMGVEALLALQDVGGPLERKRRAVRRAGRILDTLDDLKIGLLEGEISGFDLDRL
                     RRAVRDERDNTDDPALEAVLDEIELRAAVEVAKLEQASRAA"
     gene            2085..>2254
                     /locus_tag="VHN39_03185"
     CDS             2085..>2254
                     /locus_tag="VHN39_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEX2815371.1"
                     /translation="MRHSIRILSILLLAASLALGSSPAAAKSRIKDIVEFEGVRDNQL
                     IGYGLVVGLNGTG"
BASE COUNT          375 a          763 c          722 g          394 t
ORIGIN      
        1 gttcgtggat cgtcgcctgg ccgtcccagg cgaggtcggt ggtgctctcg cccggcccgg
       61 ccgccgaata gaggtaagcc gccatgcagc gcatggactg cgaggcgcag agcagctccc
      121 gatcgtcggc cttgccgacc acgatgttgg acgccgagag gttgcagagg atcagcgcgc
      181 cggccaacgc ggcccgggtc gagggcgggg tcggcgacca gaagtcctcg caaatctcgg
      241 ccgcgaagct gaagtccgtc aggtccgtgg cttcgaacac caggtccgtg ccgaagggcg
      301 cgtcctggcc ggccagccgg gtggtcaggc cggtcacgcc cgcgcctggc gcgaaccagc
      361 gattctcgta gaattcccga tagttgggca ggaaactttt ggggatgact ccgagaattc
      421 taccccgcgc gatcaccacc gcgcagttgt agagcgcgcc cgaatgctcc accggcgcgc
      481 cgacgatcag caccggcgcg aggtcattgc tggcggccac cagaccctcg atctcggcct
      541 ccacccgccg cagcagggcg tcctgcagga agaggtcgtc gatggcgtag gccgagagcc
      601 ccagttccgg aaacagcatc aggtcgcagc cgcgcgcgtg gccgtccttc gccagcgcca
      661 gggtctgggc ggcgttgaac cctggatcgc caaccgccac cgccggcgtg caggcggcga
      721 cccgcacgaa gccatggctg tggatcgcgt ggaacggcct agacccagat gtcttcacgg
      781 atttcacggg cagctcgcct ctcatccccc cgccactagc gactgatttg ccgcccggga
      841 gaaatgctca ctttgagcat atataggcga aggcttgaga aatggcaaag acgccagtcc
      901 tcgtgagcct ctcggctagt cgtcgcggtg gacgcgctcg cggcgttcgt ggcgttcctg
      961 ggcttccagg ctgagcgtgg cgatcggccg ggcgtcgagg cgggcgacgc cgatgggctc
     1021 gccggtctct tcgcagtagc cgtagctgcc gtcctcgatc cggcgcagcg cttcgtcgat
     1081 cttggagatc agcttgcgtt gccggtcgcg ggtcctgagc tcaagtgacc gatcagtctc
     1141 cgacgacgca cgatcggcga ggtcaggatg attctcggtt tcgctctgta gatgtttgag
     1201 ggtctctcca gattcccgga gaatgtcctc tttccagtcc atgagctttt gcttgaaata
     1261 ctcaagctga cgctcgctca taaacacctc gtcctccgaa ggacgataca ccggcctgtc
     1321 agccagaact tcggctgcct tcatggacac ttcgagcccc ctaaaccacc cgagacacgc
     1381 ggggggctta tagcaaatgg aacatgggtt tcaatcagcc agacgcgccg cgggcgatta
     1441 cgccgcacgg gaggcctgct cgagtttggc gacttcgacc gccgcgcgca gttcgatctc
     1501 atcaaggacc gcctccaaag cggggtcgtc ggtgttgtcc cgctcgtcgc ggacggcgcg
     1561 gcgcaggcgg tccaggtcaa agcccgagat ctcgccttcc agcagtccga tcttgaggtc
     1621 atcgagggtg tcgaggatcc gcccggcccg gcggaccgcc cggcgtttgc gctccagcgg
     1681 cccgcccacg tcctgcagag ccaggagcgc ctcgacgccc atgacgccct gcgtcgcgga
     1741 aaccgaggag gcctggctgg ccccaccggc gggtcccggc gtgatgattc ggaagccatc
     1801 gccgcccgcg ctgcgcgccg ggcgtgcgcc tgaggacgat ccgatcccgc ttgggccggt
     1861 gaccttcatg ctgcgcgctt caatccctga taactcgaac tctacggccc cttgtcggcc
     1921 ggcaagcttg aggcatggtt aatgccgggc aaaaactgcc gacgggacgc ccccgccgcc
     1981 gcgacagctc gtcgctcccg actgattttc ttgaagtttc cgcccccgcc aagctggcac
     2041 gctgatcgca tagcacgggg cgaagcagct tcaaccggta atccatgcgt cattcgatcc
     2101 gtatcctctc catcctcctg ctggccgcga gcctcgccct gggctccagc cccgcggcgg
     2161 ccaagtcgcg catcaaggac atcgtcgagt tcgaaggcgt ccgcgataac cagctgatcg
     2221 gctatggcct cgtcgtcggt ctgaacggca cggg
//
LOCUS       DATAJL010000169         1590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_15679,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000169 DATAJL010000000
VERSION     DATAJL010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15679"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..955
                     /locus_tag="VHN39_03190"
     CDS             <1..955
                     /locus_tag="VHN39_03190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2815372.1"
                     /translation="RYGMTRNLVLGLEAVLPNGEVWNGLKRLRKDNTGYDLKQLLIGA
                     EGTLGVVTAAALKLYPVMASRAVAMIGVADPETAIKLLVRAKDETGGAVEAFELMGRL
                     GVEFALKNIAGTRDPLGEAHPWYVLAEFSSGEPGSAEGSMERFLASGLEDGLIRDAVV
                     AQTDTQAKALWAIRENQSPAQKPEGATWKHDVSVPVSQVAAFLAQADAAMRAFAPGCR
                     IAAFGHMGDGNIHYDVLRPDIGQDGGAPDAPHAARRDEGSRIVHDIVASMGGSISAEH
                     GLGSMKTEEARRYKSPVEIEALTAIRKALDPKRIMNPRVLF"
     gene            complement(952..>1590)
                     /locus_tag="VHN39_03195"
     CDS             complement(952..>1590)
                     /locus_tag="VHN39_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815373.1"
                     /translation="RHLTGLMASPLSAITSAMHSLCAGTALFVGLTAALALSGAARAE
                     PLGACIWSRLSRAEHSHVLAAYARDMGAGADALETLDGKLKARAALCAKRGDIPPLWV
                     QTITGSEAVQASAAAALLAARRLDRSKLDAAWAAAPADVAACVRANGRLAFFSNGMGC
                     ANPAASAWLLRRLGLDQSQQPAARQALYYFNAKAIGEWGDTLVAKLAAKPAR"
BASE COUNT          244 a          551 c          571 g          224 t
ORIGIN      
        1 gcgctacggc atgacccgca atctggttct gggcctggag gcggtgctgc cgaacggcga
       61 ggtctggaat ggcctgaagc gcctgcgcaa ggacaacacc ggctatgacc tgaagcagct
      121 cttgatcggc gccgagggca ccctgggcgt ggtcaccgcc gcggcgctca agctctatcc
      181 ggtgatggcc tcgcgcgcgg tcgccatgat cggggtcgcc gaccccgaga ccgccatcaa
      241 gctcctggtc cgcgccaagg acgagaccgg tggggcggtg gaggctttcg agttgatggg
      301 ccggctcggc gtcgagttcg ccttgaagaa catcgccggg acccgcgatc cgctgggcga
      361 ggcccatccc tggtatgtgc tggccgagtt ctcatccggc gagcccggct cggcggaggg
      421 ctccatggag cggttcctgg cctccgggct ggaggacggc ctgatccgcg acgccgtcgt
      481 cgcccagacc gatacccagg cgaaggctct gtgggccatc cgcgagaacc agtcgccggc
      541 ccagaagccc gagggcgcca cctggaagca cgacgtctcc gtgcccgtga gtcaggtcgc
      601 ggcgttcctg gcgcaggctg acgcggccat gcgggccttc gcgccgggct gccgcatcgc
      661 cgccttcggc cacatgggcg acggcaacat ccactatgac gtcctgcgcc cagatattgg
      721 acaagatggg ggcgcgcccg acgccccgca cgccgcccga cgcgacgagg gctcgcgcat
      781 cgtccacgac atcgtggcgt ccatgggcgg ctcgatcagc gccgagcacg gcctgggctc
      841 gatgaagacc gaggaagcgc ggcgctacaa atcgccggtg gaaatcgagg cgctgacagc
      901 tatccgcaag gcgctggacc ccaagcggat catgaatccg cgcgtgctgt tctagcgcgc
      961 cggcttggcc gcgagcttgg cgaccagcgt atcgccccac tcaccgatcg ccttggcgtt
     1021 gaagtagtag agcgcctgcc gcgccgcggg ttgctggctc tggtcgaggc caagccgcct
     1081 gagcagccag gccgacgccg ccggattggc gcagcccatg ccgttggaga agaatgcgag
     1141 gcgaccgttg gcgcgcacgc aggccgcgac gtcggccggc gctgcggccc aggcggcgtc
     1201 gagcttcgac cggtccaggc gtctggccgc cagcagcgcg gcggcggcgg aggcctgcac
     1261 cgcttccgat ccggtgatcg tctgaaccca gagcggcggg atatcgccgc gtttggcgca
     1321 gagcgcggcc ctggccttga gcttgccgtc cagcgtctcc agcgcgtccg cgcccgcgcc
     1381 catgtcccgc gcataggccg ccaggacgtg gctgtgctcg gcccgcgaga gcctggacca
     1441 tatgcaggcg cccagcggct cggcgcgggc cgcgccgctg agcgcgagcg ccgccgtcag
     1501 gccgacgaag agcgccgtgc cggcgcatag ggaatgcatc gccgatgtga tggcggacaa
     1561 cggcgacgcc atcaagccag tcaaatggcg
//
LOCUS       DATAJL010000170         2342 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28540,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000170 DATAJL010000000
VERSION     DATAJL010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28540"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..724
                     /locus_tag="VHN39_03200"
     CDS             68..724
                     /locus_tag="VHN39_03200"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815374.1"
                     /translation="MKSAAAAQEGNLNDGVFQHGDTHQQWVFDASMFGDEPLQIDGVS
                     FRFDSRFTNQFGNSGTFDVGSTFKITLATLAGDPSTTFADNLIGRRRVLAGSQQIPYV
                     VGGLAGQTKPWGVQITFAHPYVYDPANGDLVFDIIVPGQQNFGTFDTTSNPLERTLFA
                     PNTVALTSTLLAEGPVVRFDVEAPPPVGVPEPASWALMIVGFGAAGTLLRKRRRAQLA
                     "
     gene            complement(735..>2342)
                     /gene="priA"
                     /locus_tag="VHN39_03205"
     CDS             complement(735..>2342)
                     /gene="priA"
                     /locus_tag="VHN39_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005658 - alpha DNA polymerase:primase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEX2815375.1"
                     /translation="FSRQQRTAVDAMRALAANGSFHVALLDGVTGSGKTEVYLEAAAA
                     ALAADPTAQVLVLLPEIALTQAVIGRVAERFGAEPGEWHSDVAPPARRRVWEAVANGR
                     CRIVVGARSALFLPFPNLKLIVVDEEHDASFKQEEGFIYHARDLAVARGKIENAAVIL
                     ASATPSLESLRNAEQGRYRWLRLSSRHGDARLPDIALIDLRETPPDHGRWLSPPLVKA
                     MGETFARGEQTLLFLNRRGYAPLVLCKACGERMTAPDTDSWLVEHRYSGRLVCHLTGF
                     SMPKPKACPHCGAHDSLVSIGPGVERVEEEARGLFPQARVAVFSSDTIFDAREARRMI
                     EAMADGQIDILVATQAAAKGHNFPNLTLVGVVDADLGLRGGDLRAAERTYQLLAQATG
                     RAGRKDRPGRALLQTWAPEHAVMQALAAQDRDAFVEAEMAERELAGLPPFGRLAAVIV
                     SGMDPIQLEAFVQTMAQAAPNSTGVEVYGPADAPLGLIRGRRRKRFLVRADRAVDLSS
                     YMATWRARVKPPAAIRVAIDIDPYSFL"
BASE COUNT          354 a          813 c          838 g          337 t
ORIGIN      
        1 ggcgtgttgg aagacgccgt cgttgaggtt gccttcctgc gccgcggcgg cggggttcgg
       61 cgtgtagatg aagtccgccg ccgcggcgca ggaaggcaac ctcaacgacg gcgtcttcca
      121 acacggcgac acgcaccagc aatgggtctt cgacgcctcg atgttcggcg acgagccctt
      181 gcagatcgac ggggtctcgt tccggttcga cagccgcttc accaaccagt tcggcaacag
      241 cgggaccttc gacgtcggat caacgttcaa gatcacgctg gcgacgctcg ccggagaccc
      301 cagcacaacg tttgccgaca accttatcgg ccgcaggagg gtgctggcgg gcagccagca
      361 gatcccgtac gtcgtcggcg ggctggcggg ccagaccaag ccctggggcg tgcagatcac
      421 ctttgcgcat ccctatgtct atgatcccgc caacggcgac ctggtcttcg acatcatcgt
      481 tcccggccag caaaatttcg gcaccttcga cacgacctca aatcccctcg agcggacgct
      541 gttcgctccc aacaccgtcg cgctcacgag cacgctgctg gcggaggggc ccgtcgtccg
      601 cttcgacgtc gaggcgccgc cgccggtcgg cgtgcccgag ccggcgagtt gggcgctgat
      661 gatcgtaggg ttcggggccg ccggcacgct gctccgcaag cgtcgccggg ctcagctggc
      721 ctgaggcggc gggctcagag aaagctgtag gggtcgatgt cgatggccac gcggatcgcg
      781 gccggaggct tcacccgcgc gcgccaggtg gccatgtagg acgacaggtc caccgcccgg
      841 tcggcccgga ccaggaaacg cttgcgccgg cgcccccgga tcaggccgag cggcgcgtcg
      901 gcgggcccat agacctcgac acctgtggaa ttgggcgcgg cctgggccat ggtctggacg
      961 aaggcctcca gctggatggg atccatcccc gatacgatca ccgcagcgag gcgcccgaag
     1021 ggcggcagac ccgccagttc acgctcggcc atctcggcct cgacgaaggc gtcgcggtcc
     1081 tgggcggcca gcgcctgcat caccgcatgt tccggcgccc aggtctgcag cagggcgcgg
     1141 cccggccggt ccttgcgtcc ggcgcggccg gtggcctggg ccagcagctg ataggtccgt
     1201 tccgccgcgc gcaggtcgcc gccgcgcagg cccaggtcgg cgtccaccac gccgaccagc
     1261 gtcaggttcg gaaaattgtg gcctttcgct gcggcctggg tggccaccag gatgtcgatc
     1321 tggccgtccg ccatggcctc gatcatccgc cgcgcctcgc gcgcgtcgaa gatcgtgtcg
     1381 gaggagaaga ccgccacccg cgcctggggg aacagacccc tggcctcctc ctcgacccgc
     1441 tccacgccgg ggccgatgga gaccaggctg tcatgcgcgc cgcaatgggg acaggccttg
     1501 ggcttgggca tggaaaagcc ggtcaggtgg cagaccaggc ggccggaata gcggtgttcc
     1561 accagccagc tgtcggtgtc gggcgcggtc atccgctcgc cgcaggcctt gcagagcacc
     1621 agcggcgcat agccccggcg gttgaggaac aagagcgtct gctcgccgcg ggcgaaggtc
     1681 tcgcccatgg ccttgaccag gggcggcgag agccagcggc catggtcggg cggggtctcg
     1741 cgcaggtcga tgagcgcgat gtccggcagg cgggcgtcgc cgtggcggga cgacagccgc
     1801 agccagcggt agcggccctg ctcggcgttg cggaggctct ctagcgacgg cgtcgccgag
     1861 gccaggatga cggcggcgtt ctcgatcttg ccgcgcgcca cggccaggtc gcgcgcgtgg
     1921 tagatgaagc cctcctcctg cttgaaggag gcgtcgtgct cttcgtcgac gacgatcagc
     1981 ttcaggttcg ggaacggcag gaagagcgcc gaccgcgccc ccaccacgat ccggcagcgg
     2041 ccgttggcga ccgcctccca gacccggcgg cgcgccggcg gggcgacgtc agagtgccat
     2101 tcgccgggct cggccccgaa gcgctcggcg acccggccga tcaccgcctg ggtaagcgcg
     2161 atctcgggca gcaggaccag gacctgggcg gtcgggtcag cggcgagcgc cgcggcggcg
     2221 gcctccagat agacctcggt cttgcccgag ccggtgacgc catcgagcag ggcgacgtga
     2281 aagctgccgt tggccgcgag cgcccgcatc gcatccaccg cggtgcgctg ctggcgggag
     2341 aa
//
LOCUS       DATAJL010000171         4044 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_65646,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000171 DATAJL010000000
VERSION     DATAJL010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4044
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65646"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..567)
                     /locus_tag="VHN39_03210"
     CDS             complement(<1..567)
                     /locus_tag="VHN39_03210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2815376.1"
                     /translation="MSGEYIVYGAPGSGSVTVEAALTLIGVGFRVEDTGNWKDLAASA
                     QMARVNPMRQVPALILPSGELMTESSAILTWLAESYPGAGLAPPRLDGDMRPRFLRWM
                     AYISAQIYALYWIRDVPGRLAADEAAEAVIKTRTAARIADCWRIMGEQVQPAGRFMLG
                     NQISVLDLYLAVVSRWGPRRKGFYAAAPA"
     gene            801..1844
                     /locus_tag="VHN39_03215"
     CDS             801..1844
                     /locus_tag="VHN39_03215"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEX2815377.1"
                     /translation="MTSSNIRTLPGLMTPSAAYKPFRYPWAYEYWKKQQQVHWMPEEV
                     PLGEDCKDWATKLNDRERNLLTQIFRFFTQSDVEVNDNYMERYARVFKPTEVKMMLAA
                     FSNMETIHIAAYALLLETIGMPDSEFTAFLDYQAMRDKHDYMQQFGVETNADIARTLA
                     MFGGFTEGLQLFASFAMLMNFPRHNKMKGMGQIVSWSVRDESLHCEGMIKVFHAFKAE
                     TGCVTKSVAADIVDCCKTVVGLEDKFIDLAFEAGEVQGMTPDDIKKYIRFIADWRLRQ
                     LALPEVYGVKENPLPWLQSMLSGVEHANFFEARSTEYSKAATRGQWHGNEGVWSAFDD
                     MQAKKSANEMPAE"
     gene            complement(2576..3109)
                     /locus_tag="VHN39_03220"
     CDS             complement(2576..3109)
                     /locus_tag="VHN39_03220"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815378.1"
                     /translation="MMLAATAATAAAWVSLQALPANAAVRYDFTALSSFPIGADGETF
                     TGAFSYTAPTFITGTFTQIPVASLSSCSAVGSLGPATCGDQFFTQDSSFDHVEFGLAS
                     PFVTGINYNFAPGVFAAAGTYATVSFGAEQAGTLVVTDLGAGVPEPAAWSMMLIGFGA
                     IGLVARTARRRMAGVAA"
     gene            complement(3392..>4044)
                     /locus_tag="VHN39_03225"
     CDS             complement(3392..>4044)
                     /locus_tag="VHN39_03225"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2815379.1"
                     /translation="VERATANDLLKFLALFARDSGPGARADADGDLAKAARLMLTVDR
                     PGDDPATRMALGWRRSKTGEATYYWSNGSGDGSRTFMGFNPARHIAVVALADAASGEG
                     LDDIARRVLDPAQAVNLKIPAVHHEVQLPPQALDRLLGTYRYAPGDEFTVTRGITGLL
                     LGAGPGQLVIYPEAPGRFFAKVADLQIDFDLPADGAPPLTLVLHQDGETFTYKRVP"
BASE COUNT          727 a         1319 c         1322 g          676 t
ORIGIN      
        1 ggccggggcg gcggcgtaga accccttgcg ccgcggcccc cagcgcgaca ccaccgccag
       61 gtagaggtcg agcaccgaga tctggttgcc cagcatgaag cggccggcgg gctgcacctg
      121 ctcgcccatg atccgccagc agtcggcgat ccgcgcggcc gtgcgggtct tgatcaccgc
      181 ctcggcggcc tcgtcggccg ccagccggcc cggcacgtcg cggatccagt agagggcgta
      241 gatctgggcg gagatgtagg ccatccagcg caggaaccgg ggccgcatgt ccccgtccag
      301 cctgggcggc gccagccccg cgcccggata gctctcggcg agccacgtca ggatcgccga
      361 gctctcggtc atcagctcgc ccgacggcag gatcagcgcc ggcacctggc gcatgggatt
      421 gacccgcgcc atctgcgcgc tggcggccag gtccttccag ttcccggtgt cctcgacccg
      481 aaagcccacg ccgatcagcg tcagggccgc ctccacggtc accgacccgg agcccggcgc
      541 gccatagaca atgtactcac cgctcatctc tcgcctctcc tggctggagc gccgaaaccg
      601 cgagcatgac gggaagtccg gccaaaggta cacgcatttc gggaatcttc atcaagctct
      661 acttaaaggg agggggtggt tcgtccccag gcttgttcac aacatcttgg gtgggtgcgc
      721 caacttggcg ctagatatgg tttccgatcg gtggctaaat tcggtttcca gtctccgcaa
      781 gcgttcggga ttccgccacc gtgacctcct ccaacatccg caccctgccg ggcctcatga
      841 ccccctcggc cgcctacaag cccttccgct acccgtgggc ctacgaatat tggaagaagc
      901 agcagcaggt ccactggatg cccgaagagg tgccgctggg cgaagactgc aaggactggg
      961 cgaccaagct caacgaccgc gaacgcaacc tgctgaccca gatcttccgc ttcttcaccc
     1021 agtcggacgt cgaggtgaac gacaactaca tggagcgcta cgcccgcgtc ttcaaaccga
     1081 ccgaagtgaa gatgatgctg gccgccttct ccaacatgga gaccatccac atcgccgcct
     1141 acgcgctcct gctggagacg atcggcatgc cggacagtga gttcaccgcg ttcctggatt
     1201 accaggccat gcgcgacaag cacgactaca tgcagcagtt cggggtcgag acgaacgccg
     1261 acatcgcccg caccctggcc atgttcggcg gcttcaccga gggcctgcag ctcttcgcct
     1321 ccttcgccat gctgatgaac ttcccgcgcc acaacaagat gaagggcatg ggccagatcg
     1381 tcagctggag cgtgcgcgac gagagcctgc actgcgaggg gatgatcaag gtcttccacg
     1441 ccttcaaggc cgagaccggc tgcgtcacca agtcggtcgc cgccgacatc gtcgactgct
     1501 gcaagacggt ggtcggtctg gaggacaagt tcatcgacct cgccttcgag gccggcgagg
     1561 tccagggcat gacccccgac gacatcaaga aatacatccg cttcatcgcc gactggcggt
     1621 tgcggcagtt ggcgctgccc gaggtctacg gggtgaagga aaacccgctg ccctggctgc
     1681 agtcgatgct gagcggggtc gagcacgcga acttcttcga ggccaggagc acggagtact
     1741 cgaaggcggc gacgcggggg cagtggcacg ggaatgaggg cgtgtggtcg gcgttcgacg
     1801 acatgcaggc gaagaagagc gccaacgaga tgccggcgga gtagggggca gcgtgtgaca
     1861 gcacgtcgtc cggccggtgt ctaacgacgg cgccccgccg cccatcaact accgagcgcc
     1921 gatcggagta gctctcctcg gtcttggcgt cccgacggct gtagctggcg gcatcctctt
     1981 tcggatggtg ttcttgccgg gacggggcgg cagccacgcc cttgtcccgt tcagcccgga
     2041 acatccctac gccagggtga gcggtgtgct gcttctcatt ggcctaatat tcgttgtcgc
     2101 cggactctgg ctcacgcggc gcccggatcg cagatcggac gtcgagccgc cgttgcatcc
     2161 attgaatttt tccgacgagc cgggcgagcg ccgataggcg cttcccgccc ttaaatctca
     2221 cggtggatgc gagcctgccg gcctctgcaa ctcaaggacg cgcccctggc gcgccgcggg
     2281 gcggcggcgc tttgcgccgt ccttgagttg cagagaccgg caggcagaat ggctgccatg
     2341 agatttgtcg gaaggcttgc gcttactgga gttacggtga cactgtagga aatgagcgtt
     2401 cggcgtggct gccgaattta cgctgagcgc gctccggaac tctcccgctg tcaggccaag
     2461 gcggcaattt cctacagtgt caccgtaatc cgcaagcttc tgcgccgccg ccctctccca
     2521 acctctcccg cgatgctgcg catccgggag aggagcggac ccgccgcacg ctaagctagg
     2581 ccgctacacc tgccatacgc cgtcgagcgg tgcgcgccac aaggccgatg gcgccgaagc
     2641 cgatcaacat catcgaccag gcggcaggct cgggaacgcc ggcgcccaga tcggtgacga
     2701 cgagagtccc ggcctgctcc gcaccaaagg acacggtggc gtaggttccg gcggcggcga
     2761 agacgcccgg tgcaaagtta taattaatcc cagttacgaa cgggctggcc aggccgaact
     2821 ccacgtggtc gaaagaagag tcctgagtga agaactgatc gccgcaggtc gccggaccaa
     2881 gagatccaac cgccgagcag ctcgacaagg acgcgaccgg aatctgtgtg aatgtcccgg
     2941 tgatgaaggt cggcgccgtg taggaaaagg ctccggtaaa ggtttctccg tcggcgccga
     3001 ttgggaaaga cgatagggcg gtgaaatcgt accgaaccgc cgcgttggct ggcaaggctt
     3061 gaaggctcac ccacgcggcc gctgtggcag ctgtggccgc cagcatcatc cttacgcgca
     3121 tcgaacgatc ccttcctgca ggactactta aagttgtcaa atcttaaccg atactgaccg
     3181 gtattagctg tcaagaacga aactgcagtt ggatgtagag ttacggtgac actgtaggaa
     3241 atgagcgctc ggcgtggctg ccgaatttac gctgagcgcg ccccggaact ctcccgctgt
     3301 caggccaagg cggcagtttc ctacagtgtc accgtaatcc aatcagatct tccccctcaa
     3361 tcggccttcg gcctggggga ggatctaggg ctcacggaac ccgtttgtag gtgaaggtct
     3421 ctccgtcctg gtggagcacc agcgtcaggg gcggggcgcc atcggcgggc aggtcgaagt
     3481 cgatctgcag gtcggcgacc ttggcgaaga agcggccggg cgcctccggg tagatgacga
     3541 gctggccggg tccggcgccg agcagcaggc cggtgatccc gcgggtgacc gtgaactcgt
     3601 cgcccggcgc atagcggtag gttccgagca ggcggtccag cgcctggggc ggcagctgga
     3661 cctcgtggtg gaccgcgggg atcttcaggt tcaccgcctg ggccgggtcg aggacgcggc
     3721 gggcgatgtc gtcgagccct tcgccgctgg cggcgtcggc cagcgccacc acggcgatgt
     3781 ggcgggcggg attgaagccc atgaaggtgc gcgagccgtc gccgctgccg ttgctccagt
     3841 aataggtcgc ctcgcccgtc ttcgaacggc gccagcccag cgccatgcgg gtggctggat
     3901 cgtcgcccgg ccggtcgacc gtcagcatca ggcgcgcggc cttcgccaga tcgccgtccg
     3961 cgtcggcgcg cgcgccgggt ccgctgtccc gggcgaagag cgccaggaat ttcagcaggt
     4021 cgttggccgt ggcgcgctca accc
//
LOCUS       DATAJL010000172         3974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_2941,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000172 DATAJL010000000
VERSION     DATAJL010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3974
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2941"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..177)
                     /locus_tag="VHN39_03230"
     CDS             complement(25..177)
                     /locus_tag="VHN39_03230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815380.1"
                     /translation="MADTPEDPKTDEDETPQAKPHQKDKGKVVSTAFGEKMSGGIADI
                     ADGDDE"
     gene            289..573
                     /locus_tag="VHN39_03235"
     CDS             289..573
                     /locus_tag="VHN39_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815381.1"
                     /translation="MAGGWLIGVLVQIAGEPGPLRHYYAVGHEDQAKCEWTALDWAGR
                     AGRVATSPMGGQEPVAAIRALSLAKMKILGLASGEVRELGWRHPRRWLTG"
     gene            complement(591..1163)
                     /locus_tag="VHN39_03240"
     CDS             complement(591..1163)
                     /locus_tag="VHN39_03240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815382.1"
                     /translation="MLLVLPALSLVIPGPMNGPMKLYCAGALLFALPPLAAVVLVSKM
                     GAGAPRRRAVQAILAVGLLATFAGYLDYGAAPSPGRGLSRYGELASGGPVFGVSIGMS
                     RDAAAKALIATGRFKREWNWCLAPGTFEISHPEGVKENPSEQDCKGGGLDELWQAGPL
                     YFGEFQMLDLHIRSGHVVHMKWSGGGNIIG"
     gene            complement(1199..2383)
                     /locus_tag="VHN39_03245"
     CDS             complement(1199..2383)
                     /locus_tag="VHN39_03245"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2815383.1"
                     /translation="MKFGIFYELQLPRPWRPDDEYRLYQDALTQLELADRLGYDYAWE
                     VEHHYLEEYSHSSAPGVFLGAASQRTKQIRLGHGILQLTTNHPAKLAAQVSALDLISG
                     GRVEFGMGESASITELAPFNIPFDEKRDIFEDAVRCLVPMFTSPNHSYDGPYHHFPAR
                     NVLPKPRQKPHPPLWTACSQLQTIAYAGEKGLGALGFQFVSADAAHAWVHAYYNGLTK
                     RLDKLADYPINPNIALVSMFMCAPTDEEARAKADGATFFQFCLRFYNSPDRSRPAPGS
                     VNMWEEYGKWKRANPEAAEKALSGGLIGSPETLRKKLRKFESSQIDQVIVLNQAGRNS
                     HEDICDSLELFAAEVMPEFHANIPEHEAWKARVLARDIELEEVDTEPFNIRYGVKAVA
                     LT"
     gene            2534..2962
                     /locus_tag="VHN39_03250"
     CDS             2534..2962
                     /locus_tag="VHN39_03250"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2815384.1"
                     /translation="MPLSPAAGPSLAKWLAVVADGDFRDLPSIVAADAVYHSPVEWHP
                     YPGRDLVCLLVRTAAGVFEDFKYRRQFADGDDAVLEFTAHVGGIEMKAVHILAFNALG
                     EITDIDLIARPAKGVMALGNGVAAKAAPQIKAALAAAQAA"
     gene            complement(2964..3482)
                     /locus_tag="VHN39_03255"
     CDS             complement(2964..3482)
                     /locus_tag="VHN39_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004624894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX2815385.1"
                     /translation="MIRKIAAALLAMTLAAPAMAAPAAAPKVGIDSFAQLKTPLPYPY
                     DEAANADAQVATAKAHAKASGKLLLIDLGGNWCGDCRILTATMDRPELKAFVDRHYET
                     VLVDVGHMDKNLQIPGHYGISDRLAGGVPALLVVDPKTDKLLDGGHISALEDARHMTP
                     QALADWLAQWTR"
     gene            3761..>3974
                     /locus_tag="VHN39_03260"
     CDS             3761..>3974
                     /locus_tag="VHN39_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015116 - sulfate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEX2815386.1"
                     /translation="MPEAALAASAKLYRPKLHTTLAEGYGLTDLRHDAMAGLTVAIVA
                     LPLSMAIAIASGVSPDRGVTTAIVGGF"
BASE COUNT          623 a         1273 c         1391 g          687 t
ORIGIN      
        1 accgctaggg accgcgcctg ccgactactc gtcgtcgccg tcggcgatgt cggcgatgcc
       61 gccgctcatc ttctcgccaa aggcggtgct cacgaccttg cccttgtcct tctggtgcgg
      121 cttggcttgc ggggtttcgt cttcgtcggt cttgggatct tcaggcgtgt cggccatggg
      181 gttactcctc gtcttgaggg tctagcctat tggcagttcg gcgcgcattc aactcgcgca
      241 aagcactgga gggcagctaa tccttccgcg cacaggcagg aggcaggcat ggcgggaggt
      301 tggctgatcg gggtgctggt gcagatcgcc ggcgagcccg ggccgctgcg ccactactat
      361 gccgtcggcc acgaggatca ggccaagtgc gaatggaccg cgctcgactg ggcaggccgc
      421 gccggccgcg tcgccacgag ccccatgggc ggccaggagc cggtggcggc gatccgcgcg
      481 ctcagcctcg ccaagatgaa gatcctgggt ctcgcgtcgg gcgaggtccg cgagctcggc
      541 tggcgccacc cgagacgctg gctgacgggc tgagtgaacg ccgaccgcgc ctagccgatg
      601 atgttcccgc cgccgctcca cttcatgtgg acgacgtggc cgcttcggat atgcaggtcg
      661 agcatctgaa actcgccgaa atacaagggc cccgcctgcc acagttcatc gaggccgcca
      721 cccttgcagt cctgttcaga cggattctct ttgacgccct ccggatggga tatctcgaaa
      781 gtgcccggcg ccagacacca gttccactcg cgtttgaagc ggccagtggc gatcaaagcc
      841 ttggcggcgg cgtcgcggct catgccgatc gagacgccga agacgggccc gcccgaagcg
      901 agctcgccgt acctggacag cccccggcca ggcgacggtg cggcgccgta gtcgagatag
      961 ccggcaaacg tcgccagcaa gcccacagcc aggatggctt gaacggcgcg gcgcctcggc
     1021 gcgcccgcac ccattttcga gacgaggacc acggcggcca acggcggcaa ggcgaacaac
     1081 agggcgcccg cgcagtagag cttcatgggt ccgttcatcg gcccgggaat cacgagtgag
     1141 agagcgggca ggaccagcag caacgcctgt agcgccgcga gcgcgaagac cagtcccttc
     1201 acgtcagcgc caccgccttg acgccgtagc ggatgttgaa gggttcggtg tcgacctctt
     1261 ccagctcgat gtcgcgggcc aggaccctgg ccttccaggc ctcgtgctcg ggaatattgg
     1321 cgtggaattc cggcatcacc tcggcggcga aaagttcgag gctgtcgcag atgtcctcat
     1381 ggctgttgcg gccggcctgg ttgagcacga tcacctggtc gatctggctc gactcaaact
     1441 tgcggagctt cttgcgcagg gtctcggggc tgccgatcag gccgccggag agggcctttt
     1501 cggcggcttc gggattggcc cgtttccact tgccgtactc ctcccacatg ttcaccgagc
     1561 ccggcgcggg gcgcgagcgg tccggcgaat tgtagaagcg caggcagaac tggaagaagg
     1621 tcgccccgtc ggccttggcg cgggcctcct cgtcggtggg cgcgcacatg aacatgctga
     1681 ccagcgcgat gttcgggttg atcggatagt cggccagctt gtcgagccgc ttggtcaggc
     1741 cgttgtagta ggcgtgcacc caggcgtggg ccgcatcggc gctgacgaac tggaagccca
     1801 gcgcccccag ccccttttcg ccggcatagg cgatggtctg cagctgcgag caggcggtcc
     1861 acagcggcgg gtgcggcttc tggcggggct tcggcaggac gttgcgcgcc gggaaatgat
     1921 ggtagggccc gtcgtagctg tggttcgggc tggtgaacat cggcaccagg cagcgcacgg
     1981 cgtcctcgaa gatgtcgcgc ttttcgtcga agggaatgtt gaagggcgcc agctcggtga
     2041 tcgaggcgct ctcgcccatg ccgaactcga cgcggccacc cgagatcagg tcgagcgccg
     2101 agacctgggc ggcgagcttg gccggatggt tggtggtgag ttgcaggatg ccgtggccca
     2161 ggcggatctg cttggtccgc tggctggcgg cgcccaggaa gacgccgggg gcggaggagt
     2221 gggaatattc ctccagatag tggtgctcca cctcccaggc gtagtcgtag cccagccggt
     2281 cggcgagctc gagctgggtg agcgcgtcct ggtagaggcg gtattcgtcg tctggcctcc
     2341 agggcctcgg aagctgcagc tcatagaaga tgccgaactt catcctaagc gtcctcccgc
     2401 cattctcttt tttcgaagtc cacaccgcgc gggatttggg gtcaagccgg acgggaactc
     2461 aggccgggcg tcggaacagg agaacggcgg gcgtccttgg ggtgagacgg ggtcagatga
     2521 aggacgaacg cccatgccgc tttctcccgc cgcgggaccc tccctcgcca aatggctcgc
     2581 cgtggtcgcg gacggcgatt tccgcgatct gccttcgatc gtggcggccg acgcggtcta
     2641 ccactcgccg gtcgagtggc atccctatcc cgggcgcgac ctcgtgtgcc tgctggtgcg
     2701 gacggcggcg ggggttttcg aggacttcaa ataccgccgc cagttcgcgg acggcgacga
     2761 cgccgtgctg gaattcaccg cccatgtcgg cggcatcgag atgaaggcgg tccacatcct
     2821 tgccttcaac gccttgggcg aaatcaccga catcgacctg atcgcgcgcc cggcgaaggg
     2881 cgtcatggcg ctgggcaacg gggtggccgc caaggccgcg ccgcagatca aggcggcgct
     2941 ggcggcggcc caggcggcct agcctagcgc gtccattggg ccagccagtc ggcgagcgct
     3001 tggggggtca tgtggcgggc gtcttccagc gccgagatgt ggccgccgtc gagcagcttg
     3061 tcggtcttcg ggtcgacgac cagcaaggcg ggcacgccgc cggcaaggcg atcgctgatc
     3121 ccatagtgac cggggatctg caggttcttg tccatgtggc ccacatccac cagcacggtc
     3181 tcatagtggc ggtcgacgaa ggccttgagc tccggccggt ccatggtggc cgtcaggatc
     3241 cggcagtcgc cgcaccagtt gccgcccaga tcgatgagca gcagcttgcc cgacgccttg
     3301 gcatgcgcct tggccgtggc cacctgggcg tcggcgttgg ccgcctcgtc atagggatag
     3361 ggcaagggtg tcttgagctg ggcgaagctg tcgataccga ccttgggcgc cgcggcgggc
     3421 gcggccatgg cgggagcggc gagggtcatg gccagcagcg cggcggcgat tttgcggatc
     3481 atgcgaaggt tccgatcaac aggtggcgcg cagagaacca gtccccggtc gggatgtcgc
     3541 gccagaattc caacccggtc gaactggaaa tcttcgtgcg cgtcctacat gcgcccgccc
     3601 cggggaatcg cgacgcccgg cctgatctgc gaacggtggc tcgggcggcc gtcctgactc
     3661 cgtagcagta cggagtatgc gctggccgcc gggaccctta ggatgggaca aagcgggagg
     3721 tggttgccac gtccttgcgc aattcccggg atttggaacc atgcccgaag cggcgctcgc
     3781 cgcctctgcg aagctctatc ggccgaagct ccacaccaca ctggcggagg gctatggcct
     3841 gacggatctg cgccacgacg ccatggcggg cctcacggtc gccatcgtcg ccctgccgct
     3901 ttccatggcg attgcgatcg cgtccggagt ctcaccggac cgcggggtca cgacggcgat
     3961 cgtcggcggt ttcc
//
LOCUS       DATAJL010000173         9428 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104408,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000173 DATAJL010000000
VERSION     DATAJL010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9428
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104408"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..187)
                     /locus_tag="VHN39_03265"
     CDS             complement(<1..187)
                     /locus_tag="VHN39_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017503963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl diphosphate synthase family
                     protein"
                     /protein_id="HEX2815387.1"
                     /translation="MSAQDNSSSAGAPDKGAGDQARLHVAIVMDGNGRWAKRRGLPRT
                     VGHQAGVEALKRIVQAAP"
     gene            complement(229..795)
                     /gene="frr"
                     /locus_tag="VHN39_03270"
     CDS             complement(229..795)
                     /gene="frr"
                     /locus_tag="VHN39_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEX2815388.1"
                     /translation="MAIVEKPELSKYRDRMDKAVSALKEEFASLRTGRASASLLDQIN
                     VEAYGSTMPINQVGAISVPEPRMISVSVWDKALVISVEKAIRSAGLGLNPVTDGQNLR
                     IPIPPLTEERRKDLVKVAGKYAEQQRIAVRNIRRDANEDLRAAEKAHVISQDEEKRME
                     TEVQKLTDEAIRRVDEALKTKEQEIMHV"
     gene            complement(831..1550)
                     /gene="pyrH"
                     /locus_tag="VHN39_03275"
     CDS             complement(831..1550)
                     /gene="pyrH"
                     /locus_tag="VHN39_03275"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEX2815389.1"
                     /translation="MPDGQPRYKRILLKLSGEAGVGGGQFGIDPKTLQAVAEDIGQVI
                     NAGVQVCLVVGGGNIFRGAALAESGMERASADYVGMLATVMNALALQATLEKVGVYTR
                     VQSAIPMEAICEPYIRRRALRHLEKGRVVIFAAGLGAPFFTTDTPAALRAAEMGCDAL
                     FKGTSVDGVYTADPKTDPEATRFETLTYKQVLQKDLRVMDTSAVSLMRDNHIPIVVFS
                     IRERGNLLKVLKGEGVFTTIA"
     gene            complement(1655..2593)
                     /gene="tsf"
                     /locus_tag="VHN39_03280"
     CDS             complement(1655..2593)
                     /gene="tsf"
                     /locus_tag="VHN39_03280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HEX2815390.1"
                     /translation="MADITAALVKDLREKSGVGMMDCKNALQETGGDIAAAMELLRKK
                     GLSKAEKKSGRAAAEGLVAGKLSDDGKTGVLIELNAETDFVSKNDTFQAAAREIANVA
                     LSVEGVEAISAAKTAKGETVSELITNMIATIGENMRLRRSARLTVSQGVVSLYLHNAQ
                     SEGMGLLGVIVALEGAGDQAVLKEVGRKIALHVAGTPMPPLALSTDDLDPAAVEKEKK
                     FLTEQALESGKPIGVVEKIIEGRIRKWQEEVVLLKQPFVMDPDKTIEQLIAETAKQSG
                     SPVVLKAFVRFALGEGVDKGESLDFAAEVASMAGQS"
     gene            complement(2936..3730)
                     /gene="rpsB"
                     /locus_tag="VHN39_03285"
                     /pseudo
     CDS             complement(2936..3730)
                     /gene="rpsB"
                     /locus_tag="VHN39_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517373.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
     gene            3971..4288
                     /locus_tag="VHN39_03290"
     CDS             3971..4288
                     /locus_tag="VHN39_03290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815391.1"
                     /translation="MRLIMILALSLAGGAAQAQIQPPKNPYAISPPTLGSTASGGAFK
                     PYEGYQPPKVSADPFSPAGEAERERRAAKAEQARTNGAFSPAGEAKRERDQAKRDKAN
                     NPF"
     gene            complement(4295..7732)
                     /gene="dnaE"
                     /locus_tag="VHN39_03295"
     CDS             complement(4295..7732)
                     /gene="dnaE"
                     /locus_tag="VHN39_03295"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEX2815392.1"
                     /translation="MSGAEERGFVHLRVRSAYSLLEGAIKADKIGVLAAGAGMPAVAL
                     TDRANLFGALEFSVATKEAGVQPIIGCALPVTGIGEGPSERWAKTPTLVLLAQNEQGY
                     ANLSELSSAAFLEIDPADEPHVSWAKVCEHSEGLILLSGGPDGPADPLFAGGRAKEGR
                     AVLAEMHRVFGDRFYVELQRHELASEAAAEPELVAFAYGADVPLVATNDVYFQATAMH
                     QAHDALLCIADGAFIGQDERRRVSAEHWFKSPADMRALFADLPEACDNTLDIARRCAF
                     MVPKRDPILPRFPTEGGRSEDDELAYQAREGLKARLKINAPSQALSVYEDRLEREIGV
                     ITSMGFAGYFLIVSDFMKWAVAHGVPVGPGRGSGAGSLVAWSLMITGLDPLKYGLIFE
                     RFLNPERVSMPDFDIDFCQERRDEVIAYVQQRYGRDRVAQIITFGTLQARAVLRDVGR
                     VLQLPLGQVDRLAKLVPANPANPVTLAKAIEIEPRLRQARDEDEGVARLLDIALQLEG
                     LYRNASTHAAGIVISDRPLTQLVPLYRDPRSDLPASQFNMKWVESAGLVKFDFLGLKT
                     LTVVDRAMKHLERRGAGFALETLPLDDPGAYEVMASGLTVGVFQMEGQGMRDTLRQLR
                     PQSLEEVTALISLYRPGPMDSIPAYVDTKMGRKPLDVLHPLLTDVLTPTYGVIVYQEQ
                     VMQIAQILAGYSFGEADLLRRAMGKKKKEEMDKQRERFLSGAAERGVTAELADLLFGL
                     MEKFSGYGFNKSHAAPYALIAYQTAWLKANAPVEFFAGSMSLDLANTDKLSVFYQDAK
                     RCGVKIRSPDVNLSGADFEVEDGEVLYALGAIRNVGLQAMEHVVAERREHGPFRDIFD
                     FVERVDPKQVNKRTFETLARAGAFDSITPNRAMLFGAAETLVGYAQSVAADRASSQVS
                     LFGGDQADAARPRIAKCDPWTPVQRLDEELAAVGFYLSGHPLDDMVEALRRRRTDLLT
                     DAIAKAEAGAEALRMAGVVRRRQERAAQGSGEKFAFVTLSDPTGEYEVLFPPESWRRC
                     RDQLEPGAAVAITVRARAKDGEVRFFGDSAEPVAKAVENVVAGLRVHLAPRSAEIDAL
                     KKRLEGVINPRGGEIVLVAGVGDGREVEMKLPGRFTLDGAVRGALKTSPGVVFVEDL"
     gene            complement(7762..7851)
                     /gene="sidA"
                     /locus_tag="VHN39_03300"
     CDS             complement(7762..7851)
                     /gene="sidA"
                     /locus_tag="VHN39_03300"
                     /inference="COORDINATES: protein motif:HMM:NF033228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SidA"
                     /protein_id="HEX2815393.1"
                     /translation="MVRLARESLAFASVASFVWMVCAVASHMG"
     gene            complement(7913..8941)
                     /locus_tag="VHN39_03305"
     CDS             complement(7913..8941)
                     /locus_tag="VHN39_03305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815394.1"
                     /translation="MTFEEAVAAQEAGDFEAAERGYLALSGSRNAFYNLAILYRTLGR
                     IGESERAYRLILAAYPDMAGAQRGLAMCLLAQGQYAEAWPLYEGRRKAQPTPDPLADF
                     PEWQGESLAGKHIVVVAEQGAGDQLMFARFIPVLIERGAQVTVACDPRTIARLFERAG
                     FQTTPFLRAGQRLPRADFWVFMASLPLRLNHPRPPAAGYLTMPGEGGGIGVMATGNPA
                     HQNDAHRSLRGADAEGLLRLGRDLSPEATGARDFDDSAQIMAGLDLVITVDSAVAHLA
                     GAMGKRCWVLLPRLGMDWRWNMGSESDWHPQARLFRQTVAGDWSGVIERLRAEIDATC
                     LTMGTKGE"
     gene            9117..>9428
                     /locus_tag="VHN39_03310"
     CDS             9117..>9428
                     /locus_tag="VHN39_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815395.1"
                     /translation="MRWIVIGFCLAIAAGGAAQGAQAVSAELIRLHDDLRLSDSQEQA
                     WRDYTAAIAPDPQTQARHRATQELLPMVPTPRRIALIEATMTQDALDFQRQGAAVKAF
                     YG"
BASE COUNT         1490 a         3175 c         3147 g         1616 t
ORIGIN      
        1 ccggcgcggc ctggacgatc cgtttcaggg cctcgacgcc ggcctggtgg ccgacggtgc
       61 gcggcaggcc gcggcgtttg gcccagcgcc cgttgccgtc catgacgatc gccacatgca
      121 gccgcgcctg atcccccgcg cccttgtcag gcgcgcccgc ggacgagctg ttgtcttgag
      181 cggacatggg agcggaatgg gtccttacgg cgtatgtcgg cgcgtcggtt aaacgtgcat
      241 gatctcttgt tctttggttt tcaaggcttc gtccacgcgc cggatcgcct catcggtcag
      301 cttctggacc tcggtctcca tgcgcttttc ctcgtcctgg ctgatgacgt gggccttctc
      361 ggcggcgcgc aggtcttcgt tggcgtcacg gcggatgttg cgcaccgcaa tccgctgttg
      421 ttcggcgtac ttgccggcga ccttcaccag gtccttgcgg cgttcctcgg tgagcggcgg
      481 gatcgggatc cgcaggttct ggccgtcggt caccggattg agacccaggc ccgctgagcg
      541 gatcgccttt tccacagaga tcaccagcgc cttgtcccag acgctgacgc tgatcatccg
      601 cggctccggc acggaaatcg cccccacctg gttgatcggc atggtcgagc cgtaagcttc
      661 gacattgatc tggtcgagga ggctcgccga ggcgcggcca gtgcgcaggc tggcgaattc
      721 ctctttcagg gcggagaccg ccttgtccat gcggtcccgg tatttggaca gttccggctt
      781 ttccacaatg gccatacttc gctcccttgc ttcctcggct ggcggcgcgg ctaggcgatc
      841 gtcgtgaaga cgccttcgcc cttcagcacc ttcaagagat tgccccgctc gcgaatcgag
      901 aagaccacga tcgggatgtg gttgtcgcgc atcaggctga ccgcggaggt atccatgacg
      961 cgcaggtctt tctgcaggac ctgtttgtag gtgagcgtct cgaagcgcgt ggcctcgggg
     1021 tcggtcttcg ggtcggcggt atagacccca tcgacgctgg tgcccttgaa gagcgcgtcg
     1081 cagcccatct cggcggctct gagcgcggcg ggcgtgtcgg tggtgaagaa cggggcgccc
     1141 aggcccgcgg cgaagatcac cacgcggccc ttttccagat gccgcagcgc acgccggcgg
     1201 atgtagggct cgcagatcgc ttccatcggg atcgccgact ggacgcgggt gtagaccccg
     1261 accttttcca gcgtcgcctg cagcgccagc gcgttcatca ccgtggccag catacctaca
     1321 tagtctgcgc tcgcccgttc catcccgctc tcggccaggg ccgcgccacg gaagatgttg
     1381 ccgccgccca ccaccaggca gacctggacg ccggcgttga tcacctggcc gatatcctcg
     1441 gcgaccgcct gcagggtctt ggggtcgatg ccgaactgac cgccgccgac gcccgcctcg
     1501 cccgaaagct tgagcaggat gcgtttatag cggggctggc cgtcgggcat ggggaatccc
     1561 tatctcagag cgaacataaa ccaagggcgc ggcgcgtcga taagcgccgc gcccccagct
     1621 gactcaatcg ggccggctca agcagaaggc cagcttagct ctggccggcc atcgaggcga
     1681 cttccgccgc gaagtccagg ctttcaccct tgtccacgcc ctcaccgagc gcgaagcgga
     1741 cgaaggcctt cagcaccacg ggcgaacccg actgtttggc ggtctcggcg atcagttgct
     1801 cgatggtctt gtccgggtcc atcacgaagg gctgcttgag gagcacgacc tcttcctgcc
     1861 acttgcggat acggccttcg atgatcttct cgaccacgcc gatcggcttg ccggactcca
     1921 gcgcctgttc ggtcaggaac ttcttttcct tctcgacggc ggcgggatct aggtcgtcgg
     1981 tcgacagcgc tagcggcggc atcggagtgc cggccacgtg cagcgcgatc ttgcggccca
     2041 cctccttcag caccgcctga tcgcccgcgc cttccagcgc cacgatcacg cccagcaggc
     2101 ccatgccctc gctctgcgcg ttgtgcaggt acagggagac gacgccctgg ctcaccgtga
     2161 ggcgggccga gcggcgcagg cgcatgttct cgccgatggt ggcgatcatg ttggtgatca
     2221 gttcggagac ggtctcgcct ttggcggtct tggccgcgga aatagcttcc acgccctcga
     2281 cgctcagcgc cacattggcg atttcgcggg ctgcggcctg gaaggtgtcg ttcttcgaga
     2341 cgaagtcggt ctcggcgttc agctcgatga gcacgccggt cttgccgtcg tcgctcagct
     2401 tgccggccac caggccctcg gccgcggcgc ggcctgactt cttctcggcc ttcgacaggc
     2461 ccttcttgcg cagcagctcc atggccgctg cgatgtcgcc gcccgtttcc tgcaaggcgt
     2521 tcttgcagtc catcatgcca acgccggatt tttcgcgcag gtccttgacc agcgcagcgg
     2581 tgatgtccgc catggtcagc tccttaaagt tatagaggtc gggcgcagac ctcgcggact
     2641 ccgcccccag gggtaatcgc tcagtgagac gcttctaggc ggctcagctg gcctgttctt
     2701 cactcggctg ttcggccacg gcttccggct ctgccgccgg cgcttccgcg gcggtggtat
     2761 cggcctcggc gacgggctct tcagccgcaa cttcggcgac cggttcagca gcgggttccg
     2821 gctccggcgc ggcctcagcc accggttcag ccacagcttc aggggcggct tcggccacgg
     2881 cctccggcgc cgcttcggcg acaggttctg gcgcggggtc aacggccttt tcagccttgg
     2941 ccttcttcgg cttcggctcg gccaccggtt ccggcgccag ttgcttggcg agcgccggct
     3001 ccagaggcgc ctccgaggcg cccaggtcga cgcccgacgc cgactggccg gcggccagac
     3061 cgtcgaggac cgagtcggcc atcaggtcgc agtagagctg gatcgcgcgg gcggcgtcgt
     3121 cattccccgg gatcgggaag gtgatgccgt cggggttgca gttggtgtcc aggatcgcga
     3181 tcaccgggat gttgagcttg cgcgcttcct ggatggcgat ggcttccttg ttggtgtcga
     3241 tcacgaacat caggtcgggg atcccgccca tgtccttgat gccgcccagg gagagctcga
     3301 gcttgtcgtg ctcgcgcttc agctgcagca gctccttctt ggtgcggccg gtctcggttt
     3361 ccaggacgcc ttccagctca cgcagacgcg cgatggagcc cgacacagtg cgccagttgg
     3421 tgagcgtgcc gcccagccag cggtgattca catagtattg cgcgcagcgg cgcgcggccg
     3481 tggcgatcgg ctcggaggcc tgacgcttgg tgcctacgaa caggatccgg ccgccggacg
     3541 cggcgacttc gcgcaccttc acaagggcct ggtgcaggag cgggatcgac tgcgagagat
     3601 cgatgatgtg gatgttggag cggctgccga agatgtagcg ctccatcttc gggttccagc
     3661 gatgcgtctg gtggccgaag tgagcgccgg cttcgagcaa ttggcgcata gagaaatcgg
     3721 gcagtgccat aggtagataa gtccttcttc cggttgaacc gccgctggca agcctctcga
     3781 gagaggaccg gaatggaagc gggcgggatg tctccccgcc acgtcgccaa acgccaacgt
     3841 gtggattgga gccgggcact taagggtttg agccggaaaa atcaaccgat tgacggggta
     3901 agccgcaaaa caggggttga agctctgcct tggattagta tggtgcgcgg gaacaatgag
     3961 ggaacgcgaa atgcgcctga tcatgatcct ggccctgagc ttggccggcg gcgcggctca
     4021 agcccaaatc cagccgccaa agaaccccta cgccatcagc ccgccgaccc tgggctcgac
     4081 ggcatcgggc ggggcgttca aaccctacga gggctatcag ccgccgaagg taagcgccga
     4141 ccccttttcg ccggccggtg aggccgagcg tgagcgccgc gccgcgaagg ctgaacaggc
     4201 ccggacaaat ggcgcctttt cgccggctgg cgaggcgaaa cgcgagcgcg accaggccaa
     4261 gcgcgacaag gcgaacaatc cgttctaggc gaccctagag gtcctcgaca aacaccacgc
     4321 cgggcgaggt cttgagtgcg ccacgcaccg cgccgtccag ggtgaagcgg cctggcagct
     4381 tcatctcgac ctcgcggccg tcgccgacgc cggccaccag gacgatctcc ccgccccgcg
     4441 gattgatcac gccttccagc cgcttcttga gcgcatcgat ttcagcgctg cggggcgcca
     4501 ggtggacgcg caggcccgct acgacgttct cgaccgcctt ggccaccggc tcggcgctgt
     4561 cgccgaagaa gcggacctca ccgtccttgg cccgcgcacg cacggtgatc gccaccgcgg
     4621 cgcccggctc cagttggtcg cggcaccgac gccagctctc cggcgggaac agcacctcat
     4681 actcgccggt gggatcggag agggtgacga aggcgaactt ctcgccggag ccctgggccg
     4741 cgcgctcctg ccggcggcgc acgaccccgg ccatgcgcag agcctcagcg ccggcctcgg
     4801 ccttggcgat ggcgtcggtc agcaagtccg tgcgccggcg gcgaagcgcc tcgaccatgt
     4861 cgtccagcgg gtgcccggag aggtagaagc ccaccgcggc cagttcctcg tccaggcgct
     4921 gaaccggcgt ccaggggtcg cacttggcga tgcgcggccg ggcggcgtcg gcctggtctc
     4981 cgccgaacag gctgacctgg gatgaggcgc ggtcggcggc cacgctctgg gcgtagccca
     5041 ccagggtctc ggccgccccg aacagcatgg cgcggttggg cgtgatagaa tcaaaggctc
     5101 cagcgcgggc cagggtctcg aaggtgcgct tgttgacctg cttgggatcc acccgctcga
     5161 cgaagtcaaa gatgtcgcgg aacggcccgt gttcgcggcg ctcggcgacc acgtgctcca
     5221 tggcctgcag gccgacgttg cgaatggcgc ccagggcata gagcacctcg ccatcctcga
     5281 cctcgaaatc ggcgccggaa aggttcacgt cggggcttct gatcttcacc ccgcagcgct
     5341 tggcgtcctg gtaaaagacc gagagcttgt cggtgttggc caggtccagg ctcatggagc
     5401 ccgcgaagaa ctccaccggg gcattggcct tcagccaggc ggtttggtag gcgatgagcg
     5461 cgtagggcgc ggcgtggctc ttgttgaagc cgtagccgga gaacttctcc atcaggccga
     5521 acagcaggtc ggcgagttcg gcggtgaccc cgcgctcggc ggcgccggac aggaagcgtt
     5581 cccgctgctt gtccatctcc tccttcttct tcttgcccat ggcgcggcgc aacaggtccg
     5641 cttccccgaa gctgtagccg gccaggatct gggcgatctg catcacctgt tcctggtaga
     5701 cgatcacgcc ataggtcggc gtgagcacgt cggtgagcag cgggtgcagc acgtccaggg
     5761 gtttgcgccc catcttggtg tcgacgtagg cgggaatcga atccatcggg cccggccggt
     5821 agagcgagat cagcgccgtg acctcctcca gggactgggg gcggagctgg cgcagggtgt
     5881 cgcgcatccc ctgcccttcc atctggaaca cgcccacggt caggccggag gccatcacct
     5941 cataggcgcc ggggtcatca agcggcagcg tctcaagcgc aaagcccgcg ccgcggcgct
     6001 ccaggtgctt catggcccgg tcgacgacgg tcagcgtctt caggcccagg aagtcgaact
     6061 tcaccaggcc cgcgctctcc acccatttca tgttgaactg gctggccggc agatccgaac
     6121 gcggatcgcg gtagagcggg acaagctggg tgagcggccg atcggagatg acgatgccgg
     6181 cggcgtgggt cgaggcgttg cggtagagcc cctcgagttg cagcgcgatg tcgagcaggc
     6241 gcgccacacc ctcgtcctcg tcccgcgcct ggcgcaggcg gggctcgatc tcaatggcct
     6301 tggcgagcgt caccggattg gcggggttgg ccggcaccag cttggccagg cggtcgacct
     6361 ggcccagcgg gagttggagc acacgcccga cgtcccgcag gacggcgcgg gcctgcaggg
     6421 tgccgaatgt aatgatctgg gcgacccggt cgcggccata gcgctgctgg acgtaggcga
     6481 tcacctcgtc gcggcgctcc tggcagaagt cgatgtcgaa gtcgggcatg gagacccgct
     6541 cggggttcag gaaccgctcg aagatcaggc cgtacttcag cgggtcgagg ccggtgatca
     6601 tcagtgacca ggcgaccagc gagcccgcgc cggagccgcg gcccggcccc accggcacgc
     6661 cgtgagccac cgcccacttc atgaagtccg acacgatcag gaagtagccg gcgaagccca
     6721 tcgaggtaat gacgccgatc tcgcgctcca gccggtcctc gtagaccgac agggcttgag
     6781 agggcgcgtt gatcttcaat cgcgccttca ggccctcgcg cgcctgatag gccagttcat
     6841 cgtcctccga gcgaccgccc tcggtgggga agcgtggcag gatcggatcg cgcttgggca
     6901 ccatgaaggc gcagcgccgg gcgatatcga gggtgttgtc gcaggcctcc gggaggtcgg
     6961 cgaagagggc gcgcatatcg gcaggcgact tgaaccagtg ctcggccgag acccggcggc
     7021 gctcgtcctg gccgatgaag gcgccgtcgg cgatgcacag cagcgcatcg tgcgcctgat
     7081 gcatggccgt cgcctggaaa tagacgtcgt tggtcgcgac gaggggcacg tcggccccat
     7141 aggcaaaggc caccagctcc ggttcggcgg ccgcctcgct ggccagttca tggcgctgca
     7201 attccacata gaagcggtcg ccaaagacgc ggtgcatctc ggccagcacc gcgcggcctt
     7261 ccttggctcg tccgccggcg aacagggggt cggccggccc atcggggccg ccggagagca
     7321 ggatcaggcc ctcggaatgc tcgcagacct tggcccagga gacgtgcggc tcatcggccg
     7381 gatcgatctc cagaaacgcc gcagaggaga gttcgctgag gttggcgtag ccctgctcgt
     7441 tctgggccag cagcacgagg gtcggcgtct tggcccagcg ctcgctcggc ccctcgccga
     7501 tcccggtgac cggaagcgcg cagccgataa tcggctggac gcctgcttcc ttggtggcga
     7561 cggagaattc caacgccccg aacaggttcg cccggtcagt aagcgccacg gccggcatcc
     7621 cggcccccgc ggccaagacc ccgatcttgt cggccttgat cgcgccttcc agcagcgaat
     7681 aggcggaacg gacccgcagg tgaacgaagc cccgttcttc cgccccgctc acgctcgccg
     7741 cctcctgcat tcgcatggcg atcagcccat atgggacgcc actgcgcaca ccatccagac
     7801 aaagctcgct accgacgcaa aggccagtga ttctcgggcc agacgaacca tgtgtcgcaa
     7861 tccttctgtg ggcgcggctg tggatagccg gcaattcgtt ccgttttcgt tcttattccc
     7921 cttttgttcc catcgtcaag cacgttgcgt caatctcggc gcggaggcgt tcgattacgc
     7981 cgctccagtc ccccgcgacg gtctgcctga acagccttgc ctgtgggtgc cagtcggact
     8041 cgctccccat gttccagcgc cagtccatgc cgagcctcgg cagcagcacc cagcagcgct
     8101 tgcccatggc gccggccagg tgggcgacgg cgctgtccac ggtgatgacc agatccagtc
     8161 cggccatgat ctgagcgctg tcatcgaaat cccgagcccc cgtggcctca ggcgacaggt
     8221 cgcgtccgag gcggagcagc ccctcggcgt cagccccccg cagcgagcga tgagcgtcgt
     8281 tctgatgggc cgggttgccg gtggccatga cgccgatgcc gcccccctcg cccggcatcg
     8341 tcaggtaacc cgccgccggt ggacgcgggt gattcagccg cagggggaga gaggccatga
     8401 acacccagaa gtcggcccgc gggagccgct gaccggcccg caggaaaggt gtcgtctgga
     8461 accccgcgcg ttcgaacagg cgggctatcg tacgcggatc gcacgcgacg gtgacctgcg
     8521 cgccgcgctc gatcaggaca ggaatgaacc gcgcgaacat caactggtca ccggcgccct
     8581 gctcggccac cacgacgatg tgcttgcccg ccagggactc gccttgccac tcggggaaat
     8641 cggccaaggg atctggcgtg ggttgggcct tgcgacgccc ctcatagagc ggccacgctt
     8701 cagcgtactg accctgggcc aggaggcaca tggcgagacc acgctgggcg ccggccatgt
     8761 cgggatacgc cgccaggatc aaacggtagg cgcgctcaga ctcgccgata cgcccaaggg
     8821 tgcgatagag tatcgcgaga ttgtagaagg cgttgcgcga tccactgagg gccagatacc
     8881 cacgctccgc ggcctcgaaa tcgccggcct cctgcgccgc caccgcctcc tcgaacgtca
     8941 tgtcccacat ctagatgagc gccgccgagg agaccagtcc gcccgctgtc ctgcgaagac
     9001 tgccggtgcg ctcttcgctc gccggcgctt ccgcacccgt cgcgtattca ggcgcgccgc
     9061 ggcatgcgat agtgggcggc gggggactgg cggacgggcg ttgaggacgt gatcgaatgc
     9121 gttggattgt catagggttt tgcctcgcca tcgcggcggg cggcgcggcg cagggcgccc
     9181 aggcggtgag cgccgaactg atccgcctgc acgatgacct caggctcagc gacagtcagg
     9241 aacaggcctg gcgggactac accgcggcca tcgccccgga tccccagacc caggcccggc
     9301 atcgcgccac gcaggaactc ctgcccatgg tgccgacgcc caggcgcatc gcactgatcg
     9361 aggcgacgat gacccaggat gccctcgact tccagcgtca gggcgcggcg gtcaaggcct
     9421 tctacggc
//
LOCUS       DATAJL010000174         3716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41725,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000174 DATAJL010000000
VERSION     DATAJL010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3716
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41725"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(34..927)
                     /locus_tag="VHN39_03315"
     CDS             complement(34..927)
                     /locus_tag="VHN39_03315"
                     /inference="COORDINATES: protein motif:HMM:NF021497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A-modifier LpxR family protein"
                     /protein_id="HEX2815396.1"
                     /translation="MRPLAILATVLTCAAANAAGAQTSAYAAMTGQAPLSTQIQSTGR
                     SDEVATLALLNGAAFAPATASTSVDPISRLIERETYQPGQGLVRWTSGETQLSPANGG
                     GPVDSLRVSVGGAFRSPGGAPLNLSRAQYEADAYEVALTRDWPAAFAFAGDRFGVDLT
                     PHAGVGMTSVGGSAEAGATLRLMQADGVAAERLHAMGVRDGASFGERGRWYLFAAASG
                     RAVGLNMLHGDTGWDRAGWTTDATSALIGDTQLGVGWRKGAMQTSFGYIHREVKGQNL
                     LWGLDSKPDSMVAFSFSIRPH"
     gene            complement(1171..3030)
                     /locus_tag="VHN39_03320"
     CDS             complement(1171..3030)
                     /locus_tag="VHN39_03320"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEX2815397.1"
                     /translation="MSEAAKVGIAESIERVVEASARPQLQLVRKVEVDRSRDDLLTDF
                     GKTTLEDRYLLAGESYQDMFARVATAFADDADHAQRIYDYISKLWFMPSTPVLSNGGA
                     GRGLPISCFLNAVPDSLEGIQSVWNENVHLASNGGGIGTYWGGVRSIGEKVKGAGQTS
                     GIIPFIRVMDSLTLAISQGSLRRGSAAVYLDIHHPEIEEFLEIRKPSGDFNRKSLNLH
                     HGISITDEFMEAVRDGAMFGLRSPKTKDVVKDVDARTLWQKILEIRLQTGEPYLIFSD
                     TVNRSMPQHQRELGLSVRQSNLCSEIMLHTGKDHLGAERTAVCCLSSVNAETFLEWRD
                     HPTFIEDVMRFLDNVLQDFIDRAPPEMANAVYAAKRERSVGLGLMGFHTFLQAQNVPF
                     ESALAKSWNMRLFKTLRRQCDAASRTLAAERGPCPDAEERGIMERFSHKLAIAPTASI
                     SIICGGTSAGIEPIPANIYSHKTLSGTFAVKNIYLERILEQTGNNTPAVWDGILENEG
                     SVQHLDFLSQDDKDVYKTAFEIDQRWVVELAADRTPDICQSQSVNIFLPGDVDKWDLH
                     MLHWQAWERGCKSLYYLRSKSVQRASHAGGETHVAVDMSGVAKTDYEECLACQ"
     gene            complement(3291..>3716)
                     /locus_tag="VHN39_03325"
     CDS             complement(3291..>3716)
                     /locus_tag="VHN39_03325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX2815398.1"
                     /translation="LSAPGGGHFFGPVLAEIPSAAFLQKEVFGPILHVVRYDANDLDA
                     AAGPLAAAGYGLTLGVHSRIEAFADQVRAAVPAGNAYVNRSMIGAVVGVQPFGGEGLS
                     GTGPKAGGPNALLRYAVERAVSVNIAAQGGDPALLNLNP"
BASE COUNT          594 a         1202 c         1296 g          624 t
ORIGIN      
        1 ggctgggagg ggtaggactc cgccgccggc gcgctagtgc gggcggatcg agaaggagaa
       61 ggcgaccatc gagtccggct tcgaatccag gccccagagc aggttctggc ccttcacctc
      121 gcggtggatg tagccgaacg aggtctgcat cgcgcccttg cgccagccga cgcccagctg
      181 ggtgtcgccg atcagggcgg aggtggcgtc tgtggtccag ccggcgcggt cccagccggt
      241 gtcgccgtgc agcatgttga ggcccaccgc ccggccgctg gccgcggcga acaggtacca
      301 gcggccgcgc tcgccgaagc ttgcgccgtc gcggacgccc atggcgtgca gccgttcggc
      361 ggcgacgccg tcggcctgca tgagccgaag cgtcgcgccc gcctcggccg agccgcccac
      421 actggtcatg ccgacgccgg cgtggggcgt caggtcgacc ccgaagcggt cgccggcgaa
      481 ggcgaaggcc gcgggccagt cgcgggtcag cgcgacctcg taggcgtcgg cctcgtactg
      541 cgcgcggctg aggttcagcg gcgcgccgcc ggggctgcgg aaagcgccgc cgacgctgac
      601 gcgcaatgaa tcgaccgggc cgccgccgtt ggccggcgac agttgggtct caccgctcgt
      661 ccagcgcacc aggccctggc cgggctgata ggtctcgcgc tcgatcaggc ggctgatcgg
      721 gtcgacggag gtgctggccg tggccggcgc gaaggcggcg ccgttcagca gcgccagcgt
      781 cgcgacctcg tcggatctgc cggtggactg aatctgggtg gagagcgggg cctggccggt
      841 catggccgca taggcggagg tttgcgcgcc ggcggcgttc gccgcggcgc aggtcaggac
      901 ggtggccagt atagccagcg gccgcatcgt ctggtctccc caacccgcga attcgaagtg
      961 agcggtcctt cgcgtgctta gcgtaaggcg caaacccaac tgcggttccc cgattggcag
     1021 cctaggcacg ggcccgggct ttttcgagtc aattctccat tatgcaaagg ctatgccgga
     1081 cctgcgaacc tattgattag attcaggtca gtcacagatg tgacgcgatc agacctgttg
     1141 tgacgcggcc gcggcccggc gccttacgcc ctactggcag gcaaggcatt cctcgtagtc
     1201 ggtcttggcc acgcccgaca tgtcgaccgc cacgtgggtc tcgccgcccg cgtggctcgc
     1261 ccgctgcacc gacttcgagc gcaggtagta gagcgacttg cagccgcgct cccaggcctg
     1321 ccaatggagc atgtgcaggt cccacttatc gacatcgccc ggcaggaaga tgttgaccga
     1381 ctgcgactgg cagatgtccg gcgtgcggtc ggcggccagt tcgaccaccc agcgctggtc
     1441 gatctcgaag gccgtcttgt agacgtcctt gtcgtcctga ctgaggaagt cgaggtgctg
     1501 gaccgagccc tcgttctcga ggatcccgtc ccagacggcg ggcgtgttgt tgccagtctg
     1561 ctccaggatg cgctccagat agatgttctt caccgcgaaa gtgccggaga gcgtcttgtg
     1621 gctgtagata ttggccggga tcggctcgat gccggcgctg gtgccgccgc agatgatcga
     1681 gatcgaggcg gtgggcgcga tggcgagctt gtgtgagaag cgctccatga tgccgcgctc
     1741 ctcggcgtcg ggacacggac cgcgctcggc ggcgagcgtg cgggaggccg cgtcgcactg
     1801 gcggcgcagc gtcttgaaga gccgcatgtt ccagctcttg gccagcgcgc tctcgaacgg
     1861 cacgttctgc gcctgcagga aggtatggaa ccccatcagg cccaggccca ccgaccgctc
     1921 gcgcttggcg gcgtaaacgg cgttggccat ctccggcggc gcgcggtcga tgaagtcctg
     1981 cagcacgttg tcgaggaagc gcatgacgtc ctcgatgaag gtcggatggt cgcgccattc
     2041 caggaaggtc tcggcgttca ccgacgacag gcagcagacc gcggtccgtt cggcgcccag
     2101 gtgatccttg ccggtgtgca gcatgatctc ggagcagagg ttggactggc gcaccgacag
     2161 gccgagctcg cgctgatgct gcggcatcga gcggttcacg gtgtcggaga agatcaggta
     2221 gggctcgccg gtctgcaggc ggatctcgag gatcttctgc cacagcgtgc gggcgtcgac
     2281 atccttgacc acgtccttgg tcttgggcga gcgcaggccg aacatggcgc cgtcacgcac
     2341 ggcctccatg aactcgtcgg tgatcgagat gccgtggtgc aggttgagcg acttgcggtt
     2401 gaagtccccc gacggctttc gaatctccag gaactcctcg atctccgggt gatggatgtc
     2461 gaggtagacc gccgccgagc cgcggcgcag cgagccctga ctgatcgcca gcgtgagtga
     2521 gtccatcacg cggatgaagg ggatgatgcc gctggtctgg cccgcgccct tcaccttctc
     2581 gccgatggag cgcacgccgc cccagtaggt gccgataccg ccgccgttgg aggccaggtg
     2641 gacgttctcg ttccagacgc tctggatgcc ttccaggctg tccggcacgg cgttcaggaa
     2701 gcaggagatc ggcaggccgc ggcccgcccc gccgttcgac agcaccggcg tcgagggcat
     2761 gaaccacaac ttcgaaatgt agtcgtaaat ccgttgcgca tggtcggcat catcggcgaa
     2821 ggccgtggcg actcgcgcga acatgtcctg atagctctcg ccggccagga ggtagcgatc
     2881 ttccagcgtg gtcttgccga aatcggtcag caggtcatcg cgcgaacgat cgacctcgac
     2941 cttgcggacc aactgcagtt gcgggcgagc agacgcctcg acaacccgtt caatagactc
     3001 ggcaatccca actttcgccg cttcactcat cgtccctgac ccatgcccct aacaggaacc
     3061 cgactccaga gagtgcggtt cctcgcccct acatgttgtg ggcgacacgc ccgaacaacc
     3121 tacatatggg gcacccgtcc taatgactcg tcaatgaggg cggccatcgg cgcccagctt
     3181 ttttcgtaaa ccaaaggtta acgaggcgcc cctgccctcg gcagatcaag ggcttggcgg
     3241 tcattgacgc acccccgctc acgacactgt gagaatagtc gcgttgggct ctagggattg
     3301 agattgagca gcgccgggtc gccgccctgg gcggcgatgt tgacgctgac cgcgcgttcg
     3361 acggcgtagc gcagcagggc gttgggcccc ccggccttgg ggccggtgcc ggagaggcct
     3421 tcgccgccga acggctggac gccgaccacc gcgccgatca tcgagcggtt gacgtaggcg
     3481 ttgccggccg ggacggcggc gcggacctgg tcggcgaaag cctcgatgcg gctgtggacg
     3541 ccgagcgtca gaccatagcc ggcggcggcg agcggcccgg cggcggcgtc gaggtcgttg
     3601 gcgtcatagc ggaccacatg caggatcggt ccgaacacct ccttttgcag gaaggccgcc
     3661 gaggggattt ccgccaggac ggggccgaag aaatgtccgc cgccgggggc gctgag
//
LOCUS       DATAJL010000175         2134 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41736,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000175 DATAJL010000000
VERSION     DATAJL010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41736"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1690
                     /locus_tag="VHN39_03330"
     CDS             <1..1690
                     /locus_tag="VHN39_03330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEX2815399.1"
                     /translation="GGEERALTTGGTELKSWATAEFIAQEELARETGYWWSPDETKIA
                     LAHVDQSGVDVVDRVDIGAEGGTVVHQRYPRVGRPNAVVELYVADVATGARVKVDLGA
                     NPDIYLARADWAKDGGTLFVQRLTRDQKRLDLLAVDPATGAARVILSETSPHWVPLSE
                     DLKPLKDGTFLWSSERDGNKHLYLYAADGKLIRQVTHGDWPVAALEGIDEARQMAIFA
                     ASKDTPIERRLYEVSWAKPGEPKALTPAGGWWSADVAKTGGAFAGSYSDPKTPPRTGL
                     YKADGTFVRWIEENPLATGHPFQPYAAHLRPMEFGTIKAADGQMLHWSMRTPFGFDPK
                     KRYPVIVQVYGGPASALVAKHWASPSDQLLTDAGYILFSIDNRGTPNRSTAFKTAIDR
                     RTGGVDVDDQLAGAAFLKSLPYVDGGRLGVTGYSNGGYMTLMLLTVPNSPFAAGVAGA
                     PVTDWTLYDTAYTERYMGTPADNAEGYRASQVTARLANLKPGALLIVHGMADDNVIFE
                     NSTRVIYKLQALGTDFEMMTYPGLRHRTGWTSKPLMHRTIATLDFFGRKLKPAP"
     gene            complement(1687..2103)
                     /locus_tag="VHN39_03335"
     CDS             complement(1687..2103)
                     /locus_tag="VHN39_03335"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEX2815400.1"
                     /translation="MILLEPPPGRQVFRLKFEPTAADIDENGHVNNVVYLRWAQDLGV
                     AHWQSLAPAEAQATWAWVALRHEIDYRRALKPGETALGRTWVAETAEGPRFTRFIRID
                     AADGAMCAQVQTTWVLIEQTTGRPKRVPPWMVEMFA"
BASE COUNT          353 a          740 c          740 g          301 t
ORIGIN      
        1 cggcggggag gagcgggcgc tgacaaccgg cggaacggag ctcaagagct gggcaaccgc
       61 ggagttcatc gcccaagagg agctggcccg cgagaccggg tactggtggt cgccggacga
      121 gacgaagatc gcgctcgccc acgtcgatca gtccggcgtc gacgtcgtcg accgcgtcga
      181 catcggcgcc gagggcggga cggtcgtcca ccagcgctat ccgcgcgtcg ggcggcccaa
      241 cgccgtcgtc gagctctacg tcgccgacgt ggcgactggc gcccgcgtga aggtcgacct
      301 gggggccaac cccgacatct acctggcccg cgccgactgg gcgaaggacg gcgggaccct
      361 cttcgtccag cgcctgaccc gcgaccagaa gcggctggac ctgctggccg tcgatccggc
      421 gacgggcgcg gccagggtga tcctcagcga gaccagcccg cactgggtcc cgctcagcga
      481 ggacctcaag ccgctgaagg acgggacctt cctctggtcc tccgagcggg acgggaacaa
      541 gcacctctat ctctatgcag ccgacggcaa gctcatccgc caggtgaccc atggcgactg
      601 gccggtggcc gccctggagg ggatcgacga ggcccgccag atggcgatct tcgcagccag
      661 caaggacacg ccgatcgagc ggcggctcta cgaggtttcc tgggccaagc cgggcgagcc
      721 caaggccctg acgccggccg gtggctggtg gagcgccgac gtggccaaga ccggcggcgc
      781 cttcgccggc agctattccg accccaaaac gccgccgcgc accggcctct acaaggccga
      841 cgggacgttc gtgcgctgga tcgaggagaa cccgctggcg acgggccatc cgttccagcc
      901 ctacgccgcg cacctgcggc cgatggagtt cgggaccatc aaggccgccg acggccagat
      961 gcttcactgg tcgatgcgca cgcccttcgg cttcgatccc aagaagcgct atccggtgat
     1021 cgtgcaggtc tatggcggac cggcctcggc gctggtggcc aagcactggg cgtcgccgtc
     1081 cgaccagctc ctgaccgatg ccggctacat cctcttcagc atcgacaacc gcggcacgcc
     1141 caaccgctcg acagccttca agaccgccat cgaccggcgg accggcgggg tggacgtgga
     1201 cgaccagctg gcgggcgcgg ccttcctgaa gtcgctgccc tatgtcgacg gcgggcggct
     1261 cggcgtcacc ggctattcca acggcggcta catgaccctg atgctgctga cggtccccaa
     1321 ctcgccgttc gcggcggggg tggccggggc gccggtgacc gactggacgc tctacgacac
     1381 cgcctacacc gagcgctaca tgggcacgcc cgccgacaac gccgagggct accgggcctc
     1441 gcaggtgacc gcgcggctcg cgaacctgaa gccgggcgcc ctgctcatcg tccacggcat
     1501 ggccgacgac aacgtgatct tcgagaattc gacacgggtg atctacaaac tccaggcgct
     1561 aggcaccgac ttcgagatga tgacctatcc ggggctgagg caccgcacgg gctggacctc
     1621 gaaacctctg atgcaccgga cgatcgccac cctcgatttc ttcggccgca agcttaagcc
     1681 ggccccttag gcgaacatct ccaccatcca gggcgggacg cgtttgggcc ggccggtggt
     1741 ctgttcgatg aggacccagg tggtctggac ctgggcgcac atggcgccgt cggcggcgtc
     1801 gatgcggatg aagcgggtga agcgggggcc ctcggcggtc tcggcgaccc aggtgcggcc
     1861 caaggccgtt tcaccgggtt tcaaagcgcg gcgatagtca atctcgtggc gaagggcgac
     1921 ccaggcccag gtcgcctgcg cctcggcggg cgcgaggctc tgccaatggg cgacgccgag
     1981 gtcctgggcc cagcgcagat agaccacgtt gttcacatgg ccgttctcgt cgatgtcagc
     2041 ggcggtgggc tcgaacttga gccggaagac ctggcggccg ggcggcggct ccagcaggat
     2101 caagcttcga gcaggccctg ttcggccagg gcgg
//
LOCUS       DATAJL010000176         1925 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28596,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000176 DATAJL010000000
VERSION     DATAJL010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28596"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..624
                     /gene="rplI"
                     /locus_tag="VHN39_03340"
     CDS             37..624
                     /gene="rplI"
                     /locus_tag="VHN39_03340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEX2815401.1"
                     /translation="MKVILLERVEGKGALGDVVTVKDGYARNFLLPRAKALRANNANL
                     KVFEGQRAEIEARNAKAKEAAGSSGEKLDGTSYILIRQAGESGQLYGSVAGRDVADAV
                     NAAGGQKIDRAMVALDKPIKTLGMHEVKVRLHAEVTVTVTLNIARSQDEAERQARGEN
                     IIDTQFEEDRIATEEAQADLLEGGAGSIEGNYVQD"
     gene            813..>1925
                     /locus_tag="VHN39_03345"
     CDS             813..>1925
                     /locus_tag="VHN39_03345"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEX2815402.1"
                     /translation="MKSRIILFAAASAATLLATGAMAQSKPITAAAAPAAASVDELVV
                     TGSRAEPRSRLETLAPVDVVTAQTLQKRGSTELASALAATVPSLDFPRPSNTDGTDSV
                     RPLTLRGQGPDQTLVLINGVRAHTSALVNINGSVGRGSAAVDLNTIPEIAIDRIEVLR
                     DGASALYGSDAIAGVINIGLRQADHGGGATATYGEHVTRINFFNAGDKKITDGGATTV
                     EGWQGYKLGSDGFLTVSAEYRDQNHTNRSDVDPRFNPRIVDSRFGDGDVEEKTLYFNA
                     GKPLADGWEAYAWGGGQLRHSETAATFRAANDATQNIPSVYPAGYLPLINTHSNDFSV
                     GGALKGELAGWKSNFSIDYGWNNLKYGVEHTLNPSLG"
BASE COUNT          361 a          688 c          577 g          299 t
ORIGIN      
        1 ttctccccta cgttgtgaag taagggagcc aggcacatga aagtcattct gctcgaacgt
       61 gtcgaaggca agggcgccct tggcgatgtg gtcacggtga aggacgggta tgcccgtaac
      121 ttcctcctgc cccgcgccaa ggcgctgcgc gccaacaacg ccaacctgaa ggtcttcgaa
      181 ggccagcgcg ccgagatcga ggcccgcaac gccaaggcca aggaagcggc cggctcgtct
      241 ggcgaaaagc tggacgggac gtcctacatc ctgatccgtc aggctggcga aagcggccag
      301 ctctacgggt ccgtggccgg ccgtgacgtc gccgacgcgg tcaatgccgc cggcggtcag
      361 aagatcgacc gcgcgatggt cgctctcgac aagccgatca agacgctggg catgcacgag
      421 gtgaaggtcc gcctgcacgc ggaagtcacc gtcaccgtca cgctcaacat cgcccgttcg
      481 caggacgaag ccgagcgtca ggcgcgcggc gagaacatca tcgataccca gttcgaagaa
      541 gaccgtatcg ccaccgagga agcccaggcc gacctgctcg aaggcggtgc gggctctatc
      601 gaaggcaact acgttcagga ctgatcgggt ctccagtctc gctgcggcga ggcgtggggg
      661 tcacacttcg atcctataaa gatggcgcgg ggcctccccg cgccattttt cgtccatgtt
      721 gccgaaaagt catttgcaac gccccgcgac accctagcta tggatttaca gtgtccagac
      781 gatcttttgt cgtctctctc ggggtagttt tcatgaaatc tcgcataatt ctgttcgccg
      841 cagcctctgc ggcgacgctt ttggcgaccg gcgccatggc gcagtccaag cccatcaccg
      901 ccgccgccgc gcccgccgcg gccagcgtcg acgagctggt cgtcaccggc agccgcgccg
      961 agccgcgctc gcgcctggag acgctcgccc ccgtcgacgt cgtgaccgcc cagaccctcc
     1021 agaaacgcgg ctcgacggaa ttggccagcg cgctcgcggc cacggtgccc tccctcgact
     1081 tcccgcgtcc ctccaacacc gacggcaccg actccgtccg cccgctcacc ctgcggggcc
     1141 agggacctga ccagaccctg gtgttgatca acggcgtgcg ggctcacacc tccgccctcg
     1201 tcaacatcaa cggctcggtg ggccgcggct cggccgccgt cgacctgaac accattcctg
     1261 agatcgccat cgaccgaatc gaagtgctgc gtgacggcgc ctcggcgctc tacggctccg
     1321 acgccatcgc cggagtgatc aacatcggcc tgcgccaggc cgaccacggg ggcggcgcca
     1381 ccgccaccta cggcgagcac gtcacccgca tcaacttctt caacgccggc gacaagaaga
     1441 tcaccgacgg tggcgcgacc acggtcgagg gttggcaggg ctacaagctg ggctccgacg
     1501 gcttcctgac cgtctcagcc gagtaccgtg accagaacca caccaaccgc agcgacgtgg
     1561 atccccggtt caatccgcgg atcgtcgact cccgcttcgg cgacggcgat gtcgaggaaa
     1621 agaccctcta cttcaacgcc ggcaagccgc tggccgacgg ctgggaagcc tacgcctggg
     1681 gcggcgggca gctgcgccac tcggagaccg cagccacttt ccgcgcggcc aacgacgcca
     1741 cccagaatat cccgtcggtc tatcccgccg gctacctgcc gctgatcaac acccactcca
     1801 acgacttcag cgtcggtggg gccctgaagg gcgaactcgc cggctggaag tccaacttca
     1861 gcatcgacta cggctggaac aacctgaagt acggcgtcga gcacaccctc aatccgtcgc
     1921 tcggc
//
LOCUS       DATAJL010000177         5052 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54278,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000177 DATAJL010000000
VERSION     DATAJL010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5052
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54278"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(86..643)
                     /locus_tag="VHN39_03350"
     CDS             complement(86..643)
                     /locus_tag="VHN39_03350"
                     /inference="COORDINATES: protein motif:HMM:NF024895.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HEX2815403.1"
                     /translation="MKALITAASALALAALLPAAASAQTAPTTNVGTTFYGTLGYADS
                     NTDHLNLGTIQGRVGARFGQYFGVEGELGAGVTNDKTTVGGIDIKAKIQNQEAIYGVG
                     FLPLSPEFELLARIGYGDTRAKAKASAFNVADSESGNSWNYGVGGQYHFDDKNGVRAD
                     YTREEYTGSNSGAANVYALSYVRKF"
     gene            839..1954
                     /locus_tag="VHN39_03355"
     CDS             839..1954
                     /locus_tag="VHN39_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516882.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEX2815404.1"
                     /translation="MPQAVIAATGLYTPPQSLSNAELVKAFNAYVERFNAANAAAISA
                     GEVAALTPSSVEFIEKASGIKSRYVVDKSGLIDPEVMRPNIPERANEEISVLAEMAVE
                     AARQAIERWGKPASEIDAVICAASNMQRAYPAMAIEVQQALGIGGFAFDMNVACSSAT
                     FGIKTAADFVASGSARAVLMVNPEICSGHLNFRDRDSHFIFGDVATAVIVEDAAQATG
                     GWDILGTRLKTQFSNNIRNNFGFLNRAAPEGVGAVDKLFVQEGRKVFREVVPLVSEMI
                     VEHASDLGVDPTGLKRLWLHQANINMNEMIGRRVLGRDPEPGENVIILDEFANTSSAG
                     SIIAFHRANDDFAAGETGLICSFGAGYSAGTVFVRKR"
     gene            complement(1951..3183)
                     /locus_tag="VHN39_03360"
     CDS             complement(1951..3183)
                     /locus_tag="VHN39_03360"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEX2815405.1"
                     /translation="MAQGFDPAAATAAYLATLSPEAHAKATAYTQGGHWVLLWGTLVS
                     ILVSWIVIQSGVLVRVRGGVEAKKPRPWLAVLAVVVVDGIIEGVLSIPWEAYSDWWRE
                     KSYGLTSRALAGWFGEHMLKMVIGLVVSLILFSLLYWIIRRAPKTWWLWSGFAFSVAT
                     IVFFIIGIFLIEPLFNSYKPAPPGPVRDEVVAMAKQVGVPSDKILIYDGSKQSNRYTA
                     NAGGLFGFGRVAMSDVMFKKDADQAEVRGVVGHEMGHYVRKHVLIGALETGLMALIGL
                     FLVDRLFPMAARLLGAKGVTGIADPAGLPVISILLAVLGLLATPLSNTFSRWVEADAD
                     HFSVVHFNEPDGLAKALVKTIEYRADSPSKLEEFIFYDHPSVGARVRAMMDWKAAHPP
                     TPPAAPAPAPAAEPPPKP"
     gene            3280..5019
                     /locus_tag="VHN39_03365"
     CDS             3280..5019
                     /locus_tag="VHN39_03365"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047420 - N-acyl-D-amino-acid deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacylase"
                     /protein_id="HEX2815406.1"
                     /translation="MTRFAAVSFAALAATMTLGATRPATPKTEYDYVIRGGEILDGSG
                     GAPVLGDVAVKGQRIVYVGLHAPGRAAKVIDARGKAVAPGFINMLSHSEDSLIADGRG
                     QSELRQGVTLEVMGEGNSIGPLNDRMRRLGEQREHDVKYPMDWTTLDGGLQSLAKRGI
                     ALNVASFVGAGTVRIHVLGEDDVQPSPEQLAAMRKLVREAMQDGAMGVGSALIYAPST
                     FARTDELAALTTEAGKCGGIYISHMRSEGDRLIEATDELIEISRRSGAPAEIFHMKTS
                     GRDNWGKEDAFIARIEAARAKGQRITADMYTYPASSTGFDAAMPTWVQAGGVEAWIAR
                     LKDPAIRAKVLAEMHEDHPKTWENSYRQAGPDGTLLVGFKSAALKPLTGKTLAEVAKE
                     RGTTPEDTIIDLIIADGSRIQVVYSSMSEANVAKQMTLPWVSFGSDASAQAPQGVFLL
                     SSTHPRAYGNFVRVLGKYARDEHLITLPEAVRRLSALPAHNLGLHDRGMLKAGDYADI
                     VVFDPKTVTDHATFTKPQQFATGVSDVLVNGQPVLKDGEPTGASAGQLVRGRGWTGWK
                     DGGCRKSAKDWTW"
BASE COUNT          858 a         1758 c         1641 g          795 t
ORIGIN      
        1 gcgcacgcgc agcttgccgg cccgcgggtc aagaaaaagc cctcccaatc agggagggct
       61 ttccgtcgca gccagggttc ggcggctaga acttcctgac gtaggacagg gcgtaaacgt
      121 tcgccgcccc gctgttgctg ccggtgtatt cctcgcgcgt gtagtcggcg cggacgccat
      181 tcttgtcgtc gaagtgatat tgcccgccga cgccatagtt ccaggaattg ccgctttcgc
      241 tgtcggcgac gttgaaggcg ctggccttgg ccttggcgcg cgtgtcgccg tagccgatgc
      301 gcgcgagcag ctcgaattcc ggcgacaatg gcaggaagcc gaccccgtag atcgcctcct
      361 ggttctggat cttggctttg atgtcgatcc cacccaccgt agtcttgtcg ttggtgacgc
      421 cggcgccaag ttcaccctcg acgccgaaat actgcccgaa gcgggcgccg acgcgaccct
      481 ggatcgtgcc gaggttcagg tggtcggtgt tcgaatccgc atagccgagc gttccgtaga
      541 acgtcgtgcc gacattggtg gtgggcgccg tctgggccga tgccgcggcc ggcaggaggg
      601 cagccagcgc cagagcggag gcggcggtga tcaaagcttt catctgaggt tcgtccttag
      661 tctacgcaaa cagcccaacc catgtggggt tcggctccaa acgcggcccc aggttgtcgg
      721 ttcagcctta ttgatatggc gaacgccgta tgtggctctc cggccacgcg ggcatgacca
      781 ctagcccggg ggcggccggg gcgtgctatc actccgcctt cgccgccgga gacgtccctt
      841 gccgcaagcc gtgatcgccg ctaccggcct ctacactcca ccgcagagcc tgtcgaacgc
      901 cgagctggtg aaggctttca acgcctatgt cgagcggttc aacgcggcca acgcggcggc
      961 gatttccgcc ggcgaggttg cggcgctgac gccctcctcc gtcgagttca tcgagaaggc
     1021 ttcgggcatc aaatcgcgct acgtggtcga caaatccggc ctgatcgacc ccgaggtcat
     1081 gcgccccaac atcccggagc gcgccaacga ggagatctcg gtcctggccg aaatggcggt
     1141 cgaggcggcc aggcaggcca tcgagcgctg gggcaagccc gcctcggaga tcgacgcggt
     1201 gatctgcgcg gcctcgaaca tgcagcgcgc ctatccggcc atggccatcg aggtgcagca
     1261 ggcgctgggc atcggcggct tcgccttcga catgaacgtg gcttgctcgt ccgccacctt
     1321 cggcatcaag accgccgccg acttcgtggc ctccggctcg gcgcgggctg tcctgatggt
     1381 caatccggag atctgctcgg gccacctcaa cttccgcgac cgcgatagcc acttcatctt
     1441 cggcgatgtc gccaccgcgg tgatcgtcga ggacgcggcc caggccaccg gtggctggga
     1501 tatcctcggc acgcggctga agacccagtt ctccaacaac atccgcaaca acttcggttt
     1561 cctgaaccgc gccgcgcccg agggcgtcgg ggccgtggac aagctcttcg tccaggaggg
     1621 ccgcaaggtg ttccgcgagg tggtgccgct ggtttccgag atgatcgtcg agcacgcgag
     1681 cgaccttggc gtcgacccga ccgggctgaa gcgcctttgg ctgcaccagg ccaacatcaa
     1741 catgaacgag atgatcggcc gccgggtcct gggccgcgac ccggagcccg gcgaaaacgt
     1801 gatcatcctc gacgagttcg ccaacacctc ctcggccggc tcgatcatcg cctttcaccg
     1861 cgccaacgac gactttgccg ccggcgagac cggcctgatc tgctccttcg gcgccggcta
     1921 ctccgccggc acggtgttcg tccgcaagcg ctagggcttc ggcggcggct ccgccgccgg
     1981 agctggcgca ggcgccgctg gcggcgttgg aggatgggcc gccttccagt ccatcatcgc
     2041 ccgcacccgc gcgcccaccg aggggtggtc gtagaagatg aactcctcca gcttcgaggg
     2101 gctgtcagcc cggtactcga tggtcttcac cagcgccttg gccaggccgt ccggctcgtt
     2161 gaagtggact accgagaagt ggtcggcgtc ggcctcgacc cagcggctga aagtgttgct
     2221 gagcggggtc gccagcagcc ccaggaccgc cagcaggatc gagatcaccg gcagccccgc
     2281 cggatcggcg atacctgtga cccccttcgc gcccaacagc cgggcggcca tcgggaacag
     2341 gcgatcgaca aggaagagtc cgataagcgc catcaatccc gtttccagcg cgccgatcag
     2401 cacgtgcttg cggacatagt ggcccatctc gtggcccacc acgccgcgca cctcggcctg
     2461 gtccgcgtcc ttcttgaaca tcacgtcgct catggcgacc cggccgaagc cgaacaggcc
     2521 gccggcgttg gcggtatagc ggttggactg cttggagccg tcgtagatca ggatcttgtc
     2581 ggacggcacg cccacctgct tggccatggc cacgacctcg tcgcgcaccg gcccgggcgg
     2641 cgccggcttg taggagttga acaggggctc gatcaggaag atgccgatga tgaagaagac
     2701 gatggtcgcc accgagaatg cgaacccgct ccacagccac caggtcttgg gcgccctgcg
     2761 gatgatccaa tagagcagcg agaacaggat cagcgacacg acgaggccga tgaccatctt
     2821 cagcatgtgc tcgccgaacc agccggcgag ggcccggctg gtcaggccat agctcttctc
     2881 ccgccaccag tcggaatagg cctcccaggg gatcgagagc acgccctcga tgatcccgtc
     2941 gaccaccacc acggccagga ccgcgagcca cggacgcggc ttcttggcct cgacgccgcc
     3001 gcgcacgcgc accagcacgc cgctctggat cacgatccag gacaccagga tgctgaccag
     3061 cgtcccccac aggagcaccc aatgcccccc ttgcgtatag gccgtggcct tggcgtgcgc
     3121 ctcgggcgac agcgtcgcca gataggcggc cgtcgccgcg gccggatcga atccctgggc
     3181 catttcggcc tcccctgttt cctcgtggcg ggaggaggcc agagattgcc aagcttgtca
     3241 ggtccgaaac cgcgctaggc tcatgcaaag gagtcgctca tgacgcgctt tgccgccgtt
     3301 tcgttcgccg ccctcgccgc caccatgacg ctcggcgcca cgcggccggc cacccccaag
     3361 acggagtacg actacgtcat ccgtggcggc gagatcctcg acggctcagg cggcgcgccg
     3421 gtcctgggcg acgtggccgt gaagggtcag cggatcgtct atgttggcct gcacgcgccg
     3481 ggccgggccg ccaaggtgat cgacgcccgc ggcaaggcgg tcgccccggg cttcatcaac
     3541 atgctctccc actccgagga cagcctgatt gccgacggcc gtggccagtc ggagctgcgc
     3601 cagggggtga ccctggaggt gatgggcgaa ggcaattcca tcggccccct caacgatcgg
     3661 atgcgcaggc tcggcgaaca gcgcgagcac gacgtcaaat accccatgga ctggacgacg
     3721 ctggacggcg gcctgcagtc gctggccaag cgcgggatcg cgctgaacgt cgcctccttc
     3781 gtgggcgcgg ggactgtgcg catccatgtg ctgggcgagg acgacgtgca gcccagcccc
     3841 gaacagctcg cggccatgcg caagctggtg cgcgaggcga tgcaggacgg cgccatgggc
     3901 gtgggctcgg cgctgattta cgccccgtcc accttcgcca ggaccgacga gctggccgcg
     3961 ctcaccaccg aagccggcaa gtgcggcggc atctacatca gccacatgcg ttccgagggc
     4021 gatcggctga tcgaggcgac ggacgagctg atcgagatct ccaggcgctc cggcgcgccc
     4081 gccgaaatct tccacatgaa gacctccggt cgcgacaact ggggcaagga agacgcgttc
     4141 atcgcccgca tcgaggccgc ccgcgccaag ggccagcgga tcaccgcgga catgtacacc
     4201 tacccggcgt cctccaccgg cttcgatgcg gccatgccca cctgggtcca ggcgggcggc
     4261 gtggaggcgt ggatcgcgcg gctgaaggat cctgccatcc gggccaaggt gctggccgag
     4321 atgcacgagg accaccccaa gacctgggag aactcctacc gccaggcggg cccggacggc
     4381 acgctgctgg tcggcttcaa gtccgccgcg ctaaaaccgc tcacaggcaa gaccctggct
     4441 gaggtcgcca aggaacgcgg gacgaccccg gaagacacca tcatcgacct gatcatcgcc
     4501 gacggatcgc gcatccaggt ggtctattcc tcgatgagcg aggccaatgt ggccaagcag
     4561 atgaccctgc cctgggtcag cttcggctcc gacgcctcgg cccaggcgcc gcagggcgtc
     4621 ttcctgctct cctcgaccca cccacgggcc tacggcaact tcgtgcgcgt gctgggcaaa
     4681 tacgcccgcg acgagcatct gatcaccctg ccggaggcgg tgcggcggct ctccgccctg
     4741 cccgcccaca acctgggcct ccacgaccgc gggatgctca aggccggcga ctacgccgac
     4801 atcgtggtgt tcgaccccaa gacggtcact gaccacgcca ccttcaccaa gccccagcag
     4861 ttcgccaccg gcgtcagcga cgtcctggtc aacggccagc cggtgctgaa ggacggcgag
     4921 cccaccggcg cgtccgccgg ccagttggtc cgcggccgcg gctggaccgg ctggaaggac
     4981 ggcggctgcc gcaaatcggc gaaagactgg acctggtgac gctacggaat atcgtgccgc
     5041 ccatgcgtgt ac
//
LOCUS       DATAJL010000178         5569 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28612,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000178 DATAJL010000000
VERSION     DATAJL010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5569
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28612"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(312..1373)
                     /locus_tag="VHN39_03370"
     CDS             complement(312..1373)
                     /locus_tag="VHN39_03370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815407.1"
                     /translation="MFRALATLGILALAAAPQARAQPVRSEAEIHQSVLSNGARRYAV
                     AVQVGGTSLLAALDTGSTGLRILPGVLAPRDVTATPEAETYGYASGSRYEGVVGEAAL
                     AIGGAKGRGPVHLIRSIGCFVYLPHCPASRTTLDKYGIASDGLPDEGFKAILGIDMAP
                     GRVGNPLRFLGAQRWIVDLPRPGEGPGRLILNPTPEETRGYIMVPLAAPYAHERGGGL
                     HDAVPGCLSNPAARARACGVVLMDTGAPGLAVANASLGAEPWPDGATAALELFDTSGG
                     LAVREALTLGLRDQGTRLTYRRETRVFGVVIYAGIAPYFAYSVLYDPRRQMIGLKPRP
                     PGPAPDGPRAVAVDAASSP"
     gene            1421..2350
                     /locus_tag="VHN39_03375"
     CDS             1421..2350
                     /locus_tag="VHN39_03375"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEX2815408.1"
                     /translation="MNPLHHVTPYWPLRGLAAGGARETFVKMDGYQPTGSFKIRGIGL
                     LCQRLKAEGARAFISSSGGNAGLAAAYAGRALGVPVTVLVPSTTPGFMRDRIEALGAQ
                     VTVEGDVWDVADALAQAMVAGGEGAYVPPFDHPLLWEGHATLIDEIVAEGPVPDAIVV
                     AVGGGGLLCGVAEGLARHGLDDVAILAVETAGAACLARAMEAGGPVTLERLDTIASSL
                     GARRIADAAFAWSERRPIVPIVVSDADALSACLRFADDHLALVEPACGAALSVAYDNH
                     PALGAFGRVAVIACGGVVVSLEKLAAWRAQFGV"
     gene            2388..2888
                     /locus_tag="VHN39_03380"
     CDS             2388..2888
                     /locus_tag="VHN39_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEX2815409.1"
                     /translation="MPADATAANVGEEVVVAETGRGRLQVEARTTTGALLIDEPVSVG
                     GLSSGPNPYDLLSAALGACTSMTLRLYAERKGWPLSRVQVSVRHHRAALDARDLFELA
                     IRLEGPLDDAQKAQLMHIAEHCPVHRTLDHGSEVTATLAAAPSAEPSLAVPPEHMRDM
                     ETACAA"
     gene            complement(2905..2979)
                     /locus_tag="VHN39_03385"
     tRNA            complement(2905..2979)
                     /locus_tag="VHN39_03385"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2945..2947),aa:Gly,seq:ccc)
     gene            3138..4232
                     /locus_tag="VHN39_03390"
     CDS             3138..4232
                     /locus_tag="VHN39_03390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase"
                     /protein_id="HEX2815410.1"
                     /translation="MSDLFEPLTLAHGPALKNRLVLAPLTNSQSHPDGTLSDDEFNWL
                     TYRAEGGFALTMTCAAHVQRVGQGFPGQLGVFGDEHLPGLTRLAARIKALGSVAVAQL
                     HHAGMRSPAPLIGEAPHCPSDNAEFGARALTLAEVEQLREDFIAAAVRCETAGFQGVE
                     IHGAHGYVLAQFLSPEVNQRTDRYGGSLENRARIVHEIIDGIRERTGADFSLGLRLSP
                     ERFGLKLGEIVDVARKILADGKIDYLDMSLWDYAKEPMDEDFQGRSLMSYFTDLPRGK
                     VRLGCAGKVMTPDDARTCLAQGMDFVLLGRAAILHHDWPQRLAADPAFTPVKVPVSID
                     YLRNERLSPNFVKYMQGWKGFVEEPQTEPA"
     gene            4312..4899
                     /locus_tag="VHN39_03395"
     CDS             4312..4899
                     /locus_tag="VHN39_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX2815411.1"
                     /translation="MADGEVVLDRAKFHAMTEGTQEDWAAIGRAAAPHRGELADRLLA
                     HLKLLDNDHGGFAVDRLEHSLQTATRAHRAGQDEEYVVCALMHDIGDILMPANHAELG
                     ATILKPYISEANHWMMEKHGVFQGYYFFHYIGLDRDMREQFRGHPHYEYCAQFCHLYD
                     QNSFDPAYDTMPLKEFEPMLRRVTAAPKQSIYKRD"
     gene            5088..>5569
                     /locus_tag="VHN39_03400"
     CDS             5088..>5569
                     /locus_tag="VHN39_03400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815412.1"
                     /translation="MSFLNRAALVAVGLALAAPVLMAGSAKAVPMVTYSWTTTSQGFG
                     PHVDQPTSATFQVALSAVQTGTISFFDITNIQLTYPGLTFDTFETSSIGFDNAVFVNP
                     LTGALVFHDADEGLAVIGVDSSDPNFSTFLSILVDNQVGGVVSDQFNALDHGTPFAGF
                     P"
BASE COUNT          880 a         1939 c         1887 g          863 t
ORIGIN      
        1 ggggaagatg gcgtgcagca ggcaggccac gccgcccacg aacatggtca tggcgaacca
       61 tgaggccgag tgcatgtgct cgaagtaggt ctcgccgacc gtttccgggt ggtcagtgaa
      121 cgcgcgaaac atggctatcc gtccctcgaa gcagcttgac cccaaggatg gcggaccgtc
      181 ggagaaaatc attatcgcgt tcgcggcgat tgcagccccg gatggaactt aattgtggtc
      241 atatgcgaca ttcggagaat ttaattctcc tttcggcgag tattaatcag atcctaaggc
      301 gataaccgac cttatggaga actggccgcg tcgaccgcga cggcgcgcgg gccgtccggc
      361 gcggggccgg gcgggcgcgg cttcagcccg atcatctgcc gcctcggatc atagagcacc
      421 gaataggcga agtagggcgc gatgcccgcg tagatcacca ccccgaacac ccgcgtctcc
      481 cgacggtagg tgagccgtgt gccttggtcg cgcaggccga gggtcagggc ctcgcgtacg
      541 gccaggccgc ccgatgtgtc gaagagctcc agggccgccg tcgcgccgtc gggccagggc
      601 tcggcgccca ggcttgcgtt ggccaccgcc aggcccggcg ccccggtatc catcaggacc
      661 acgccgcagg cccgcgcccg ggccgcggga ttgctgaggc agcccggcac ggcgtcatgg
      721 agaccgccgc cccgctcgtg ggcatagggc gcggccagcg ggaccatgat gtagccccgc
      781 gtctcctcag gtgtcggatt gaggatcagc cggcccgggc cctcgccggg ccgcggcagg
      841 tcgacgatcc agcgctgggc gcccaggaac ctcaagggat tgcccacccg ccccggggcc
      901 atgtcgatgc cgaggatcgc cttgaagcct tcatccggca ggccgtcgct ggcgatgccg
      961 tacttgtcga gtgtggtgcg cgaggcgggg caatgcggca gatagacgaa gcagccgatg
     1021 ctgcggatca ggtgcaccgg ccccctgccc ttcgcgccgc cgatggcgag cgccgcctcg
     1081 cccaccacgc cctcgtagcg ggagcccgac gcgtagccat aggtctcggc ctccggggtc
     1141 gccgtcacgt cgcgcggcgc gagcacgccc ggcaggatgc gcaggcccgt ggacccggtg
     1201 tccagcgcgg ccagaaggct cgtcccgccc acctggaccg ccacggcgta gcggcgcgcg
     1261 ccattgctga gcacggactg gtggatctcc gcctcgctgc gcaccggctg ggcgcgcgcc
     1321 tgcggagctg cggccagggc cagaatccct agggttgcga gcgcgcggaa catggccaca
     1381 tctggcgcca tcccgccgcg cgccgccaga ggacccgagg ttgaatccac tgcaccacgt
     1441 gaccccctac tggcccctgc gcgggctggc cgccggcggg gcccgcgaga ccttcgtgaa
     1501 gatggacggc tatcagccga cgggatcgtt caagatccgc ggcatcggtc tgctctgcca
     1561 gcggctgaag gccgagggcg cacgggcttt catatcgtcc tccggcggca acgccggcct
     1621 tgcggcggcc tatgccgggc gcgcgctggg ggtcccggtc accgtcctgg tgccctcgac
     1681 cacacccggc ttcatgcgcg accggatcga ggccctgggc gcgcaggtga ccgtggaggg
     1741 cgacgtctgg gacgtggccg atgcgctggc ccaggccatg gtggcgggcg gcgaaggcgc
     1801 ctatgtcccg cccttcgacc atccgctgct ctgggagggc cacgcgaccc tcatcgacga
     1861 gatcgtggct gaggggcccg tccccgacgc catcgtggtg gcggtgggcg gcggcggcct
     1921 gttgtgcggg gtcgccgagg gcctggcccg ccacggcctg gacgatgtgg cgatcctcgc
     1981 ggtggagacc gcgggcgcgg cctgcctcgc ccgggccatg gaggccggcg ggccggtcac
     2041 tctggaacgc ctcgacacca tcgcctccag cctgggcgcc cggcggatcg ccgacgcggc
     2101 cttcgcctgg tccgagcggc ggccgatcgt cccgatagtg gtgtccgacg ccgatgcgct
     2161 cagcgcctgc ctgcgcttcg ccgacgacca tctggcgctg gtggagccgg cctgcggggc
     2221 ggcgctcagc gttgcttacg acaatcaccc ggcgctcggc gcattcggcc gcgtggcggt
     2281 gatcgcctgc ggcggggtag tagtcagcct ggaaaagctg gccgcctggc gcgcccagtt
     2341 cggcgtctga cgccctgtct gttggattcg agacctaagg agccgccatg cccgcagatg
     2401 caaccgccgc caacgtcggc gaagaggtcg tggtcgccga gaccgggcgg ggacgactgc
     2461 aggtcgaagc ccgcaccacg accggggcct tgctgatcga cgagccggtc tcggtcggtg
     2521 gcctgagctc cggccccaat ccctatgatc tgctgagcgc ggcgctcggc gcctgcacct
     2581 cgatgacgct caggctctat gccgagcgca agggctggcc cttgagccgc gtgcaggtga
     2641 gcgtccgcca ccaccgcgcc gctctggacg cgcgcgacct tttcgaactg gcgatccgtc
     2701 tggaggggcc gctggacgac gcgcagaagg cccagctgat gcacatcgcc gagcattgcc
     2761 cggtgcaccg gaccctcgac cacggctccg aggtcacggc gacgctcgcc gccgctccgt
     2821 ccgccgagcc gtcgctggcc gtcccgcccg agcacatgcg cgacatggag acggcctgcg
     2881 cggcgtgatg gcggcgtggg gaattggagc gggcgatggg attcgaaccc acgacaccta
     2941 gcttgggaag ctagtgctct acccctgagc tacgcccgcg tctcgtcgag gtgcggttcc
     3001 ttagccggtc ttccagcggc cctcaagcgc gcgcgctgcg acagaaggcg tgggggcgct
     3061 gtcaggtccg ctggattgcg agagcgtgcg cgggtccgct aagaggggtc caaacgcctg
     3121 tttgaggatt gccgcccttg tccgacctgt tcgagcccct gaccctggcc cacggccccg
     3181 ccctgaagaa ccgcctggtg ctggcgcccc tcaccaacag ccagagccat cccgacggga
     3241 cgctgtcgga cgacgagttc aactggctga cctatcgcgc cgagggcggc tttgccctga
     3301 ccatgacctg cgcggcgcat gtgcagcggg tgggccaggg cttccccggc cagctcgggg
     3361 tgttcggcga cgagcacctg cccggtctca cccgcctggc cgccaggatc aaggccctgg
     3421 gcagcgtggc ggtggcgcaa cttcaccacg ccggcatgcg gtcgccggcg ccgctgatcg
     3481 gcgaggcgcc gcactgcccg tccgacaacg cggaatttgg cgcgcgcgcg ctcaccctgg
     3541 ccgaggtcga acagctgcgg gaggatttca tcgccgccgc cgtccgctgc gagaccgcgg
     3601 gcttccaggg cgtcgagatc cacggcgccc acggctatgt cctggcccag ttcctcagcc
     3661 ccgaggtcaa tcagcggacg gaccgctacg gcggcagcct cgaaaaccgg gcgcggatcg
     3721 tccacgaaat catcgacggc attcgcgagc gcaccggcgc cgacttcagc cttggcctgc
     3781 gcctgtcgcc cgagcggttc ggcctgaagc tgggcgagat cgtcgacgtg gcccgcaaga
     3841 tcctggccga tggcaagatc gactatctgg acatgtcgct ctgggactac gccaaggagc
     3901 cgatggacga ggatttccag ggccgcagcc tgatgagcta tttcaccgac ctgccgcgcg
     3961 gcaaggtgcg cctgggctgc gcgggcaagg tgatgacgcc ggacgacgcg cggacctgcc
     4021 tggcgcaggg catggacttc gttctgctgg gccgcgcggc gatcctgcac cacgactggc
     4081 cacaaaggct ggcggccgat ccggccttca ccccggtgaa ggtcccggtg agcatcgact
     4141 acctgcgcaa tgagcgcctc agccccaact tcgtgaagta catgcagggc tggaagggct
     4201 tcgtcgaaga gccccaaacc gagccggcat gaccgaaccg gcctgaccgc cttcgttgac
     4261 gacgcggccg cttggccgca ccctgtgggc gacagatcag aggagaccgc catggccgac
     4321 ggcgaagtgg tcctggaccg cgcgaagttt cacgcgatga ccgagggcac gcaggaggac
     4381 tgggccgcca tcggccgcgc ggccgccccg caccggggcg aactggccga ccggctgctc
     4441 gcccacctga agctgctcga caacgaccac ggcggcttcg cggtcgaccg gctggagcat
     4501 tctctgcaga ccgcgacccg ggcgcatcgg gccggtcagg atgaggaata cgtcgtctgc
     4561 gccctgatgc acgacatcgg cgacatcctg atgccggcga accacgccga gctcggggcc
     4621 acgatcctca aaccctacat ctccgaggcc aaccactgga tgatggagaa acacggagtt
     4681 ttccagggct actacttctt ccattacatc ggcctggacc gtgacatgcg cgagcagttc
     4741 cgcggtcacc cgcactacga atactgcgct cagttctgcc atctctatga tcagaacagc
     4801 ttcgacccgg cgtacgacac tatgccgctc aaggaatttg agcccatgct gcgccgggtg
     4861 acagcagctc cgaagcagtc gatctacaaa cgcgactgag ataccgggcg aaatctgtca
     4921 cctgaccgtc acatcgcgtg gcgtcagcgt gtgcgctcga agctctacta tagtatcacg
     4981 agaatgtgtg cgggaatgtc tcccctcaca ggcgagtccg cttgcccgcc gcaggggaag
     5041 tggcgcgggc tgcggcggag cttgtccgtc aacccagtga ggcctccatg tcgttcctga
     5101 accgcgccgc ccttgtcgcc gtgggcctcg cgctcgcggc ccccgtactc atggccggat
     5161 ctgcaaaagc cgttccgatg gtcacgtact cctggacgac gacgagtcag ggttttggcc
     5221 ctcacgtcga ccaaccgacg tcggcgacct tccaggttgc gctgagcgcc gtgcagacgg
     5281 gcacgatctc gttcttcgat atcaccaaca tccagctcac ctatcccggg ctaacgttcg
     5341 acaccttcga gacgagcagc atcgggttcg acaacgccgt cttcgtgaac ccgctgaccg
     5401 gcgccctggt tttccacgac gctgacgaag gcctggcggt gatcggcgtg gacagcagcg
     5461 acccgaactt cagcacgttc ctgtccatcc tggtcgacaa ccaggtcggc ggcgtcgtga
     5521 gcgatcagtt caacgccctg gaccacggca ctccgttcgc cggcttccc
//
LOCUS       DATAJL010000179         4841 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_3041,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000179 DATAJL010000000
VERSION     DATAJL010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4841
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3041"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(58..468)
                     /gene="rplQ"
                     /locus_tag="VHN39_03405"
     CDS             complement(58..468)
                     /gene="rplQ"
                     /locus_tag="VHN39_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018083952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005762 - mitochondrial large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEX2815413.1"
                     /translation="MRHGSAHRKLGRTSAHRTAMFANMAASLIKHEQIVTTLPKAKEL
                     RPFVEKLVTLGKRGDLHARRQAISAVRDVEQVGKLFAVLGPRYQERQGGYIRVLKAGF
                     RHGDNAAMAVIEFVDRDPAEKGKDSGPVAEAYGD"
     gene            complement(654..1670)
                     /locus_tag="VHN39_03410"
     CDS             complement(654..1670)
                     /locus_tag="VHN39_03410"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEX2815414.1"
                     /translation="MIERNWNELIRPEKPQIETGADANRKARLVAEPLERGFGVTLGN
                     SLRRVLLSSLQGAAVTAVQIDGVVHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKR
                     MTLRATGPGIVTASQIEAPSDIEILNGDHVLCTLDDGAQVRMEFTVQTGKGYVPAEMN
                     RPEDSPIGLIAVDALYSPVKRVAYRVEPTRQGQSLDYDKLIMEVETNGAVTPVDAVAY
                     AARILQDQLQIFITFEEPKKKVEGEAKPELPFNPALLKKVDELELSVRSANCLKNDNI
                     VYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLAGMGLHLGMDVPNWPPENIEELAKKF
                     EDQM"
     gene            complement(1746..2135)
                     /gene="rpsK"
                     /locus_tag="VHN39_03415"
     CDS             complement(1746..2135)
                     /gene="rpsK"
                     /locus_tag="VHN39_03415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEX2815415.1"
                     /translation="MAKEPGRVKRRERKNITSGVAHVNASFNNTMITITDAQGNTISW
                     SSAGAMGFKGSRKSTPYAAQMAAEDAGRKAAEHGVKTLEVNVSGPGSGRESALRALQA
                     VGMTITTIRDVTPIPHNGCRPPKRRRV"
     gene            complement(2148..2516)
                     /gene="rpsM"
                     /locus_tag="VHN39_03420"
     CDS             complement(2148..2516)
                     /gene="rpsM"
                     /locus_tag="VHN39_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEX2815416.1"
                     /translation="MARIAGVNIPTNKRVVIALQYIHGIGPAKARDIVAKVGIEDARR
                     VNQLTDAEVLQIREAIDRDFTVEGDLRRETAVNIKRLMDLACYRGLRHRKGLPVRGQR
                     THTNARTRKGPAKPIAGKKK"
     gene            2871..3884
                     /locus_tag="VHN39_03425"
     CDS             2871..3884
                     /locus_tag="VHN39_03425"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000034 - adenine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006146 - adenine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HEX2815417.1"
                     /translation="MTTNAQFIRGLPKAELHLHIEGSLEPELMFELARRNRITLPFAS
                     VEAVRAAYAFSNLQDFLDIYYQGAGVLMTEQDFHDLAMAYFRRVAGDGCRHVELFFDP
                     QTHTDRGLPFSVAIDGLLSGMAEAKASLGVTSKLILCFLRHLDEDAAFATLKAADPYL
                     SQIAAVGLDSSELGHPPSKFARVYQAARARGLKLVAHAGEEGPPEYVWEALDVLGVDR
                     IDHGNRALEDQGLIARLAGSGMTLTVCPLSNLKLCVVDDLKAHPLKRMLDLGLHATIN
                     SDDPAYFGGYLAENWLQTAAALNLGRVDLITLARNSFTGSFLTPAEVAPQLAAIDAYA
                     ASH"
     gene            complement(3894..>4841)
                     /locus_tag="VHN39_03430"
     CDS             complement(3894..>4841)
                     /locus_tag="VHN39_03430"
                     /inference="COORDINATES: protein motif:HMM:NF018684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
                     /protein_id="HEX2815418.1"
                     /translation="VFDSEPNAETLRICKSVRDLRPPAADLPTAAEEKALKDCDSQSF
                     YYGLGGPRDLGKARKCALLELRNDPDPNPGRLLTGAGVLMNIYANGAGVPRNLDLATH
                     MACSIPSAVAEIEGRVGRLQALKTQPGPAEPFDYCDNITSGIAGGECTGVTTTLAAMA
                     RDKRLGGVTAAWTPAQRQALANLRVAQRAFSDAHQGEVDASGTGRYAFWIEATEEVDK
                     FSDKLVAQLARGGLPAGDAVSADRALNLAYRKALAEDVEGTTVKPRDIRKAQRAWLKY
                     RDAWIALSLALRPGQPTGAVTAAVTRERARQLRDGPTYD"
BASE COUNT          728 a         1620 c         1617 g          876 t
ORIGIN      
        1 gaaaaacccc ggagggtcgc tccggggtgt ttgcttgacc tcagctttgc tactggatca
       61 gtcgccgtag gcctcggcca ccgggccgga atccttgccc ttttcggccg gatcgcgatc
      121 cacgaactca atgaccgcca tggccgcgtt gtcgccgtgg cggaaacccg ccttcagcac
      181 gcggatgtaa ccgccctggc gttcctgata gcgcgggccg agcacggcga agagcttgcc
      241 gacctgctcg acgtcacgca ccgcgctgat cgcctggcgg cgcgcatgca gatcgccgcg
      301 cttgccgagc gtcaccagct tctcgacgaa ggggcgcagc tccttggcct tcggcagcgt
      361 ggtcacgatc tgctcgtgct tgatcaggct ggccgccatg ttggcgaaca tggccgtccg
      421 gtgggcggac gtccgcccca gtttgcggtg cgcggaaccg tgacgcatct cgatatctcc
      481 tgggccgact ggcccaccag ggacgctccc gatccattgg gaagccgtcc tgcctaacca
      541 aatcccagcc ggctcccgcc cgggtcactg cgatgcgccg gagcccttca ccgctgttgc
      601 ggcttcatcg ggcccaggcc gccgaagcgg ccccggagtc ggcgcggaag gctctacatc
      661 tggtcttcga acttcttggc cagctcttcg atgttctcgg gcggccagtt gggcacgtcc
      721 atcccgaggt gcagacccat gccggccaac acttccttga tttcgttcaa ggacttgcgg
      781 ccgaagttcg gggtgcggag catctcggct tcggtcttct ggatcaggtc gccgatgtag
      841 acgatgttgt cgttcttcag gcagttggcc gagcggaccg agagttccag ctcgtcgacc
      901 ttcttcagca gcgccgggtt gaacggcagt tccggcttgg cttcgccttc gaccttcttc
      961 ttcggctctt cgaaggtgat gaagatctgc agctggtcct ggaggatgcg cgcggcatag
     1021 gccaccgcat ccaccggcgt gaccgcgccg ttggtttcga cttccatgat cagcttgtcg
     1081 tagtcgaggc tctggccctg gcgggtgggc tcgacgcggt aggcgacgcg cttgaccggg
     1141 gaatagaggg cgtcgacggc gatcaggccg atgggcgaat cttccggacg gttcatttcg
     1201 gcggggacat agcccttgcc ggtctggacg gtgaattcca tgcggacctg agccccgtcg
     1261 tccagggtgc agagcacgtg gtcgccgttg aggatctcga tgtccgaggg ggcctcgatc
     1321 tggctggcgg tgacgatgcc ggggccggtg gcgcgcaacg tcatgcgctt ggggccctcg
     1381 gcgtgcatgc gcacggccag ctgcttgatg ttcagcacga tgtcgacgac gtcctcgcgc
     1441 acgccctcga gcgaggagaa ctcgtgcacg acgccgtcga tctgcacggc ggtcacagcg
     1501 gcgccttgca gggaggagag aagcacgcgg cgcaggctgt tgcccagggt cacgccgaac
     1561 ccgcgttcga gaggttcggc caccagacgc gccttgcggt tcgcgtcagc gccggtctcg
     1621 atttgcggct tctcgggacg gataagctcg ttccagtttc gttcgatcac ggatggatgt
     1681 ccctcgaaaa cgcaggatca ccggccgcca acgcggtccg gcgcagggaa ttgggtactt
     1741 aaactctaga ctcgccggcg cttgggcgga cggcagccgt tgtgcgggat gggggtcacg
     1801 tcgcggatgg tcgtgatggt catgccgacg gcctgcaggg cgcggagcgc cgactcacgt
     1861 ccggaacccg gacccgagac attgacttcc agcgtcttga cgccgtgttc ggcggccttc
     1921 cggccggcgt cctcggccgc catctgcgcg gcatagggcg tcgacttacg tgaacccttg
     1981 aagcccatcg cgccggcgct ggaccaggag atggtgttcc cctgagcgtc ggtgatggtg
     2041 atcatggtgt tgttgaacga ggcgttcacg tgcgccacgc ccgaagtgat gttcttacgt
     2101 tcgcggcgtt taacgcgacc cggttccttg gccatcgata cgctctctta cttcttcttg
     2161 ccggcgatcg gcttggcagg acccttgcgg gtgcgtgcgt tggtgtgggt gcgctggccg
     2221 cggaccggca ggcccttgcg gtgacgcagg ccgcgatagc aggccagatc catcagccgc
     2281 ttgatattga cggcggtctc gcggcgcagg tcgccctcga cggtgaagtc gcggtcgatg
     2341 gcttcgcgga tctgcagcac ttcggcatcg gtcagctgat tgacgcggcg agcgtcctcg
     2401 atgccgacct tggcgacgat gtcccgcgcc ttggccgggc cgatgccatg gatgtactgc
     2461 agcgcgatga cgacgcgctt gttggtcgga atattgacgc cagcgatacg ggccacgtga
     2521 agatctctcc tggtcacgca agagaagcgc gaacggcgcc ccggcccctc gccccgaagg
     2581 tcaagccggt tcgtccttcg cgctctttcg cggaagcgct tcgttatagg gatcgttgcg
     2641 cttccgtcaa caacggaaac gcccatttat gaacggaaaa gggcgggcgc aaggggtact
     2701 cccccgcccg cgtccgtacg cataagaccc cgcgactctg ctccgggatg attgaggaaa
     2761 gcatgaagac ggccaggggc gcaatcgcgc gcgtcgcgtc gggtgcgatt cggccgtctg
     2821 acgcctcgcc aggcttgacg tcaggggccg cgcctcccga caatcggcgc atgaccacca
     2881 acgcccagtt catccgcggc ttgcccaagg ccgagctcca tctgcacatc gagggcagcc
     2941 tggagcccga gctgatgttc gagctcgcgc gccgcaaccg gatcaccctg cccttcgcct
     3001 cggtagaggc ggtgcgcgcg gcctacgcct tctccaacct gcaggacttc ctggacatct
     3061 attaccaggg ggccggcgtc ctgatgaccg agcaggactt ccacgacctg gccatggcct
     3121 atttccgccg ggtcgccggg gacggctgcc gccatgtgga gctgttcttc gatccccaga
     3181 cccacaccga ccgcggcctg cccttttcgg tggccatcga cgggctcctg tcgggcatgg
     3241 ccgaggccaa ggcctcactg ggcgtgacgt cgaagctgat cctctgcttc ctgcgccacc
     3301 tggacgagga cgccgcgttc gcgacgctca aggccgccga cccatacctc agccagatcg
     3361 ccgccgtggg cctggattcc tccgagctcg gccacccgcc gtccaagttc gcccgcgtct
     3421 accaggcggc ccgcgcgcgc gggctcaagc tggtggccca cgccggcgag gaaggcccgc
     3481 cggaatatgt ctgggaagcc ctggacgtcc tgggcgtcga ccgcatcgac catggcaacc
     3541 gcgcgctgga ggaccagggc ctgatcgcgc ggctcgctgg atccggcatg accttgaccg
     3601 tctgcccgct ctccaacctg aagctctgcg tggtcgacga cctgaaggcc cacccgctga
     3661 agcgcatgct ggacctgggg ctccacgcca ccatcaactc cgacgacccg gcctatttcg
     3721 gcggctacct ggcggagaac tggctgcaga ccgccgcggc tctgaacctc ggccgcgtgg
     3781 acctgatcac gctggccagg aacagcttca ccggctcgtt cctgacgccg gccgaggtcg
     3841 cgccgcagct ggcggcgatc gacgcctatg cggcgagcca ctgaacgcgg cggtcaatcg
     3901 taggtaggac cgtccctgag ctggcgcgcg cgctcgcggg tcacggcggc ggtgacggcg
     3961 ccggtcggct ggcccggccg caaggcgagc gacagagcga tccacgcatc gcggtacttg
     4021 agccaggccc gctgcgcctt gcggatgtcc cgcggcttga cggtggtccc ctcgacgtcc
     4081 tcggcaaggg ccttcctgta ggccaggttg agcgcccgat ccgcgctgac tgcgtcgccg
     4141 gctggaaggc ccccgcgcgc caactgagcg acgagcttgt cggagaactt gtccacctcc
     4201 tcggtcgcct cgatccagaa ggcgtagcgg ccggtgccag acgcatccac ctcgccttga
     4261 tgggcgtcgc tgaaagcccg ttgcgccacc ctcaggttcg caagggcctg gcgctgagcg
     4321 ggcgtccagg ccgcggtgac gccgcccagc cgcttgtccc tggccatcgc cgccaaggtc
     4381 gtcgtcacac ccgtacactc cccgccggcg ataccgctcg tgatgttgtc gcagtagtcg
     4441 aacggctcag ccggccccgg ctgggtcttg agcgcctgca ggcgcccgac tcggccttcg
     4501 atctccgcga ctgccgaggg gatcgagcag gccatgtggg tcgccaggtc gaggttgcgc
     4561 gggacgcccg cgccattggc gtagatgttc atcaagacgc ccgcgccggt cagcaatcga
     4621 cccgggttcg ggtcgggatc gttgcgaagc tcaagaaggg cgcacttgcg ggccttcccc
     4681 aggtcccggg ggccgccgag accgtaatag aagctctgcg agtcgcagtc tttgagcgcc
     4741 ttttcctcgg cggcggtcgg cagatcggcc gcgggcggac gcaggtcccg gacggatttg
     4801 cagatgcgca gggtctcggc gttgggctcg gagtcaaaga c
//
LOCUS       DATAJL010000180         3147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28639,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000180 DATAJL010000000
VERSION     DATAJL010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28639"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1898
                     /gene="xdhB"
                     /locus_tag="VHN39_03435"
     CDS             <1..1898
                     /gene="xdhB"
                     /locus_tag="VHN39_03435"
                     /EC_number="1.17.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004854 - xanthine dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="xanthine dehydrogenase molybdopterin binding
                     subunit"
                     /protein_id="HEX2815419.1"
                     /translation="ARAANSLIEDSQTMRLGDAHAAIASAPHGLSGTLAIGGQDHFYL
                     EGQVALVLPGEDGDLHVWSSTQNPTETQHLIARCLGLRDNAIVVEVRRMGGGFGGKET
                     QSVHYAALAALVVTRTGRPAKVRLDRDDDMVMTGKRHAFVTDWQVGFDGDGVLRGAAF
                     DLASRCGHSADLSIAINDRAMFHSDNAYALQAAEIVSHRLRTNTVSDTAFRGFGGPQG
                     MMGIERAMDAIALRLGKDPLDVRLANLYGVAGDQTPYGQTVTDAVAFEIMTELEASCG
                     YRARRKAVAAWNARNTILKRGLALTPVKFGISFTANHLNQAGALVHVYTDGSIHLNHG
                     GTEMGQGLNIKVAQVVAHAFQVPLETVKISATRTDKVPNTSATAASSGSDLNGMAAQA
                     ACQIIKDRLVAFAAKAFSCAPAAVTFGPDGVQAGDVNLTFTELVRRAYFERISLSATG
                     YYRTPDIHYDRANHHGRPFYYFAYGAACSEVVIDTLTGENKVTRVDILHDAGRSLNPA
                     VDLGQVEGGFIQGMGWLTTEELVFDDKGVLRTHAPSTYKIPAAGDRPDAFNLELWQPG
                     ENREATIHKSKAVGEPPLMLAISVFSALTDAVASVADHRVMPKLDAPATPERILAACD
                     DTKRRAE"
     gene            1895..2845
                     /gene="xdhC"
                     /locus_tag="VHN39_03440"
     CDS             1895..2845
                     /gene="xdhC"
                     /locus_tag="VHN39_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0009115 - xanthine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0065003 - protein-containing complex
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase accessory protein XdhC"
                     /protein_id="HEX2815420.1"
                     /translation="MSEWIGQALAAVTRGERLAMVSVVGAQGSTPREIGARMLVWPER
                     FTGTIGGGSLERQALDQARKFLTQTQRRHALQDYPLGPLLGQCCGGHVRLLVEALDAE
                     SQGWLTDAGARREPFRLQADFDAEGIKRTVAPASADAPPDGPRTPIPEVRRLSELMQP
                     AKPKLVIFGAGHIGQAVARAFAPLPFDLEWLASREDLRPEAGGTHAEILSEDDLEACI
                     EAAAPQTLFAIFTHSHDLDYRLTRAALARRDFGYLGLIGSRTKRVRFESRLKTDGFTD
                     ADLARLTCPIGIASLKSKAPAVIAVALAAQLLQLTEDPQT"
     gene            2870..>3147
                     /locus_tag="VHN39_03445"
     CDS             2870..>3147
                     /locus_tag="VHN39_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urate hydroxylase PuuD"
                     /protein_id="HEX2815421.1"
                     /translation="MTFEWAAWANLAIRWLHLTAGIAWIGSSFYFMWLDSHLKPPAEE
                     REGVAGELWSVHSGGFYHQTKFMVAPAGMPDELHWFKWEAYTTWISGFL"
BASE COUNT          499 a         1181 c         1003 g          464 t
ORIGIN      
        1 ccgcccgcgc cgccaactcc ctgatcgagg acagccagac catgcgcctg ggcgacgctc
       61 acgcggcgat cgcgtccgcg ccgcatgggc tctccggcac attggccatc ggcggccagg
      121 accacttcta cctggagggc caggtggcgc tcgtcctgcc gggcgaggac ggcgacctgc
      181 acgtctggtc ctccacccag aaccccaccg agacccagca cctgatcgcc cggtgcctgg
      241 gcctgcgcga caacgccatc gtcgtggagg tgcgccgcat gggcggcggc ttcggcggca
      301 aggagaccca gtcggtccac tacgcggccc tggcggcgct cgtcgtgacc aggaccgggc
      361 gccccgccaa ggtgcgtctc gatcgcgacg acgacatggt gatgaccggc aagcgccacg
      421 ccttcgtcac cgactggcag gtgggcttcg acggcgacgg ggtcttgcgc ggcgcggcct
      481 tcgatctcgc ctcgcgctgc ggccactccg ccgacctctc catcgccatc aacgaccggg
      541 cgatgttcca ttccgataac gcctacgcgc tgcaggccgc cgagatcgtt tcacaccgtc
      601 tacggacgaa taccgtctcc gacaccgcct ttcgcggctt cggcggcccc caggggatga
      661 tggggatcga gcgggcgatg gacgccatcg ccctccgcct gggcaaggat ccgctggatg
      721 tgcgcctggc caatctctac ggcgtcgctg gcgaccagac tccctacggc cagaccgtta
      781 ccgacgccgt ggccttcgag atcatgaccg agctggaggc gagctgcggc taccgcgccc
      841 gtcggaaagc cgtagcggcc tggaacgcgc ggaacaccat cctcaagcgc ggcctcgcgc
      901 tgacgccggt caagttcggc atctccttca ccgccaacca cctgaaccag gccggcgcgc
      961 tggtccacgt ctacaccgat ggctcgatcc acctgaacca cggcgggacc gagatgggcc
     1021 aggggctcaa tatcaaggtc gcccaggtgg tcgcccacgc gttccaggtc ccgctggaga
     1081 ccgtgaagat cagcgccacg cgcaccgaca aggtgcccaa cacctcggcc actgccgcct
     1141 cttccggcag cgacctcaat gggatggccg cccaggccgc ctgccagatc atcaaggacc
     1201 ggctcgtcgc cttcgccgcc aaggcgttca gctgcgcgcc cgccgccgtc accttcggcc
     1261 ccgatggcgt ccaggccggt gatgtgaatc tgaccttcac cgagctggtt cgccgcgcct
     1321 atttcgagcg catttcgcta tcggccaccg gctactaccg cacgccggat atccactacg
     1381 accgggccaa ccaccacggc cggcccttct actatttcgc ctatggcgcg gcctgttcgg
     1441 aggtcgtcat cgacaccctg accggcgaga acaaggtcac ccgcgtcgat atcctgcacg
     1501 acgcgggccg ctccctgaac ccggcggtgg acctgggcca ggtggagggc ggcttcatcc
     1561 agggcatggg ctggctcacc accgaggagc tggtgttcga cgacaagggc gtcttgcgca
     1621 cccatgctcc gtccacgtac aaaatccccg cggccggcga ccggcccgac gccttcaacc
     1681 tggagctctg gcagcccggc gagaaccgcg aggccaccat ccacaagtcc aaggcggtcg
     1741 gcgagccgcc gctgatgctg gcgatctcgg tcttctccgc cctgacggac gcggtggcga
     1801 gcgtcgccga ccacagggtc atgcccaagc tcgacgcccc ggccacgcct gagcgtatcc
     1861 tggccgcctg cgatgacacc aagaggaggg ccgaatgagc gagtggatcg gccaggccct
     1921 ggcggcggtg acccgcggcg agcggctcgc catggtcagc gtggtgggcg cgcaaggctc
     1981 caccccgcgc gagatcggcg cccgcatgct ggtctggccg gagcggttca ccggcaccat
     2041 cggcggcggc tcgctggagc gccaggcgct ggaccaggcc cgcaaattcc tgacccagac
     2101 gcagcgccgc cacgccctgc aggactatcc gctgggcccg ctgctcggcc aatgctgcgg
     2161 cggtcacgtc cgcctgctcg tcgaggcgct ggacgccgag agccagggct ggctgaccga
     2221 cgccggcgcg cggcgcgagc ccttccgctt gcaggccgac ttcgatgcag agggaatcaa
     2281 gcgaacggtg gcccccgcct cagccgacgc gccgcccgac ggcccgcgca ccccgatccc
     2341 cgaggtccgg cggctctccg agctgatgca gccggccaag cccaagctgg tgatcttcgg
     2401 cgccggccat atcggccagg ccgtggcgcg cgccttcgcg ccgctgccct tcgacctgga
     2461 gtggctggcc agccgcgagg acctgcggcc cgaggccggc ggcacgcatg ccgaaatcct
     2521 cagcgaggac gacctggagg cctgcatcga ggccgccgcg ccccagaccc tcttcgccat
     2581 cttcacccac agccacgatc tcgactaccg gctgacccgc gcggcgctgg cccggcgcga
     2641 cttcggatac ctcggcctga tcggttcgcg gaccaagcgc gtccggttcg aaagccggct
     2701 caaaaccgac ggcttcaccg acgccgatct cgcccgcctc acctgcccga tcggcatcgc
     2761 cagcctgaag agcaaggcgc cggcggtcat cgccgtggcg cttgcggccc aactccttca
     2821 gctaacggag gatccccaga cgtgaccttc gcccaatgac ctccgccaaa tgacctttga
     2881 atgggccgcc tgggccaatc tggcgatccg ctggctgcac ctgacggccg gcatcgcctg
     2941 gatcggttcg tccttctatt tcatgtggct ggacagccac ctgaagccgc ctgccgaaga
     3001 gcgggaaggc gtggcgggcg aactctggag cgtccactcc ggcggcttct atcaccagac
     3061 gaagttcatg gtggccccgg ccggcatgcc ggacgagctg cactggttca agtgggaggc
     3121 ctacaccacc tggatctccg gcttcct
//
LOCUS       DATAJL010000181         1608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54309,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000181 DATAJL010000000
VERSION     DATAJL010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54309"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VHN39_03450"
     CDS             <1..466
                     /locus_tag="VHN39_03450"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX2815422.1"
                     /translation="RTPDGLSPGDCADASNLPASGKPGHGAVCFHERKIGTTHDEILG
                     ICPQYDPAKPYPAACPSYDQLGFRAPLLVISPFAKRAYVSHRVADHTSLLALIEKRFL
                     TGPDGRTQHLTLRDANAWTLEDMFDFKSSPSLNTELAPPAPPPSQDCTPPKF"
     gene            559..987
                     /locus_tag="VHN39_03455"
     CDS             559..987
                     /locus_tag="VHN39_03455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2815423.1"
                     /translation="MLVSQILRSKGDTVFTVAPAETIAAVAALLHSRRVGALVVLEAE
                     RVVGIVSERDVVRALAEGGAAALGQPVSGVMTRDVLFAAPGETVDSLLTRMTDRRIRH
                     LPVCQKERLVGIVSIGDLVKSKISEVEAEADGLKAYIAAS"
     gene            complement(984..1415)
                     /locus_tag="VHN39_03460"
     CDS             complement(984..1415)
                     /locus_tag="VHN39_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEX2815424.1"
                     /translation="MLSQKARYALRALVELARADGAQLTAGELALRADAPRKFLEAIL
                     LELSRNRLVTSRRGKFGGYTLARGPAEISFAEVIRVIDGPLALAPCVSPRLHFRKCDD
                     CPDLAACTLREALARARDATAEVLEAYSLADAAQSGSDSVG"
BASE COUNT          249 a          533 c          575 g          251 t
ORIGIN      
        1 gcgcacgccg gacggcctga gtcccgggga ctgcgccgac gcctcgaacc tgccggccag
       61 cggcaagccc ggccacggcg cggtctgttt ccatgagcgc aagatcggca ccacccatga
      121 cgagatcctg ggcatctgcc cgcaatacga cccggccaag ccctatccgg ccgcgtgccc
      181 gagctatgac cagctgggct tccgcgcgcc gttgctggtg atctcgccct tcgccaagcg
      241 agcctacgtt tctcacaggg tggcggacca cacgtcgctg ctggcgttga tcgagaagcg
      301 cttcctcacc gggccggacg gcaggacgca gcatctgacc ctgcgcgacg ccaacgcctg
      361 gacgttggag gacatgttcg acttcaagtc ctcgccgtcg ctgaacaccg aacttgcgcc
      421 gcccgcgccg ccgccgtccc aggactgcac gccgcccaag ttctaagggc ggagccacct
      481 cacgctcgcg tgcgttgatg ctccggtggt tctgggtgac gctgttctca acaaataaga
      541 gagagcgagg gacgtccgat gcttgtctcc cagattctgc ggtccaaggg cgacaccgtc
      601 ttcacggtgg ccccggccga aaccatcgcg gcggtggcgg cgcttctcca ttccagacgg
      661 gtcggcgcgc tggtcgtgct cgaggccgag cgtgtggtgg gcatcgtctc tgaacgtgac
      721 gtggtgcgcg cgctggccga aggcggggcc gcggcgcttg gccagccggt ctcgggcgtc
      781 atgacccgcg acgtgctgtt cgcggcgccg ggggagacgg tcgattcgct gctgacccgg
      841 atgaccgacc ggcgcatccg gcatctgccg gtctgccaga aggagcggct ggtgggcatc
      901 gtctcgatcg gcgacctggt gaagtcgaag atctccgagg tcgaggctga ggcggatggg
      961 ctgaaggcct atatcgcggc gagctagccc acagaatcgc tgccggactg ggcggcgtcg
     1021 gccagggaat aggcctcaag cacctcggcc gtggcgtcac gggcgcgggc cagcgcctcg
     1081 cgaagggtgc aggcggccag atccgggcag tcgtcgcatt tgcggaagtg gagcctggga
     1141 ctgacgcagg gcgccagcgc caggggccca tcgatcacgc ggatcacctc ggcgaagctg
     1201 atctcggcgg gaccgcgggc cagggtgtag ccgccgaact tgccgcggcg gctggtgacc
     1261 aggcggttgc gggagagctc cagcaggatg gcttccagga acttgcgcgg cgcgtcggcg
     1321 cgcagcgcca gttcgccggc ggtgagctgg gcgccatcgg cgcgggccag ctccacgagc
     1381 gcgcgcaggg cgtatctggc tttctgcgag agcatcgcgt ctcctctggc tccttcttaa
     1441 gcggcgctgg cgcgggcgca aggcaaggcg cgggagaggg gaatttcact ccgtctacag
     1501 ccttcaccga agacggtgat tgacagggac cgggctcgcc cctagatagc gcctcccgct
     1561 cgggcggggc caattccagg cggctcggaa ggggggaaat accccccc
//
LOCUS       DATAJL010000182         2984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54312,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000182 DATAJL010000000
VERSION     DATAJL010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54312"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            209..1105
                     /locus_tag="VHN39_03465"
     CDS             209..1105
                     /locus_tag="VHN39_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX2815425.1"
                     /translation="MRQTVLWRFEAWLYDLAEFLARLFPIDAVSDFGAWLFRNLGPLT
                     SPHRVAETNLRIVFPNASEAEIAALLAAQWDQLGRWAAEFPILDRIIADPARVEVVGA
                     ERLAAIRDGAGPVVFISGHFSSFEIMPAVILHAGINCWITGRATNNPYVDANIRKSRW
                     RYGVRQFAPKGAKGTRELLRALGRGECVALMNDQKFNDGVAAPLFGVMAHTAPGPASF
                     ALRFGIPLQPFSVQRLEKARFRVIVHDPIRLQDTGDRDADIAAGVRRINSFIEERVRE
                     RPTEWFWVHKRWPNETYKKRQR"
     gene            complement(1102..1320)
                     /locus_tag="VHN39_03470"
     CDS             complement(1102..1320)
                     /locus_tag="VHN39_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2093 domain-containing protein"
                     /protein_id="HEX2815426.1"
                     /translation="MNAHDRDLTGSDLAKLHYGDGDFAVLKPGRYVVCAVTGKKVPLE
                     QLRYWSAPLQEAYIGPAEALQRWKETNT"
     gene            complement(1367..2848)
                     /gene="xseA"
                     /locus_tag="VHN39_03475"
     CDS             complement(1367..2848)
                     /gene="xseA"
                     /locus_tag="VHN39_03475"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEX2815427.1"
                     /translation="MSDVTPDTPAEDAPPAEDGNAKPYSVSELAFALKRTLEDAYGFV
                     RLRGEISKVTNHSNGHIYLTLKDERAAIDGVVWKGPVRGLSIRPEQGLEVIVTGKITA
                     YPQGSRYQIVIETMEAAGVGALLAQLERLKARLAEEGLFAAERKQALPSLPAVVGVIT
                     SPTGAVIRDILHRIRDRWPCRVIVWPVVVQGDAAAAQVAAAIRGFDALEPGGAIPRPD
                     VLIVARGGGSVEDLWAFNDEALARAVVECSIPLISAVGHETDTTLIDFVSDRRAPTPT
                     AAAEMATPVLAELKALVSDFGTRMHRTGGRAVEDRRGRVEAAGRALTRVTDLVELAAQ
                     RFGIVAGRLAAGLARNAAAHERDLVRISGRLSPLLLQRPQAVQRQRLDGFVSRLQPGV
                     LRGLERASERLAALAKLYIAVDPERPLQRGFARVTRADGSIVHAGAALASGEEVAIKF
                     GDQVTRQAVIEGAVIEDAAAEGPAPKPARPKPKAPPPPQGDLF"
BASE COUNT          457 a         1060 c          996 g          471 t
ORIGIN      
        1 agacccagga tccggcggcg gcggcgaagc cgacgaccca gatgaatatc gatcacatcc
       61 atcatgacgc gacgcccatc tcctaaaacc ccatgtcccg aagcgggacg agacgcaggg
      121 ctcgtcgcaa gctctgcgcc acatccacgc gttgctaagg ttacgacgcc agccttagta
      181 aagatgcatg acagaatccc ctctccagat gcggcagacg gtcctgtggc gttttgaagc
      241 ttggctgtat gatttagctg aatttttggc ccgtttgttt cccatagatg cagtttctga
      301 cttcggcgcg tggctgtttc gcaacctggg cccgttaacc agcccccacc gtgtcgccga
      361 gacaaatctg cggattgtct ttcccaacgc ctccgaggcc gagatcgccg ccctgctcgc
      421 cgcccagtgg gaccaacttg gccgctgggc ggcggaattc ccgatcctgg accggatcat
      481 cgccgatcct gcccgcgtcg aggtggtcgg cgccgagcgg ctggcggcga tccgcgacgg
      541 ggccgggccg gtggtcttca tctccggcca cttctccagc ttcgagatca tgccggcggt
      601 gatcctccac gccgggatca actgctggat caccggcagg gccaccaaca atccctacgt
      661 cgacgccaac attcgcaaga gccgctggcg ctacggggtg cgccagttcg cgccgaaggg
      721 ggcgaaaggc acgcgcgagc tgttacgcgc gctcggccgc ggcgaatgcg tcgccttgat
      781 gaacgaccag aagttcaacg acggcgtggc cgcgccgctg ttcggcgtca tggcccatac
      841 cgcgcctggg cccgcgagct ttgcgctgcg cttcgggatt ccgctccagc ccttcagcgt
      901 ccagcggctc gaaaaggcgc ggttccgggt gatcgtccac gacccgatcc gcctccagga
      961 taccggcgac cgcgacgccg acatcgcggc gggcgtccgc cgtatcaaca gcttcatcga
     1021 ggagcgggtt cgcgagcgcc cgaccgagtg gttctgggtg cacaaacgct ggccgaacga
     1081 gacctacaag aagcgccagc gctaggtgtt ggtctctttc caacgctgca gggcttcggc
     1141 ggggccgatg taggcctcct gcagcggcgc gctccagtag cggagctgtt ccaggggcac
     1201 cttcttgccg gtcaccgcgc agaccacata gcggccgggc ttcaggacgg cgaagtcgcc
     1261 gtcgccgtag tgcagcttgg ccaggtccga gccggtgagg tcgcggtcgt gagcgttcat
     1321 gggcgtctat ttagcgcgcc ggccctttcc agaacagggg tgggcgtcag aacaggtcgc
     1381 cctgcggcgg cggcggcgct ttcggcttcg gcctagcggg tttcggcgcg ggcccctcgg
     1441 ccgccgcgtc ttcgatcacc gcgccttcga tcaccgcctg gcgggtgacc tggtcgccga
     1501 acttgatcgc cacctcctcg ccgctcgcca gcgccgcgcc ggcgtggacg atggagccgt
     1561 cggcgcgggt gacgcgggcg aagccgcgct gcaggggccg ttccggatcg accgcgatat
     1621 agagcttggc gagcgccgcc agccgctcgg acgcgcgctc caggccgcgc agcacgcccg
     1681 gctgcaggcg gctcacgaag ccgtccagcc tctgccgctg gaccgcctgt ggcctctgca
     1741 gcagcagcgg ggagagccgg cccgaaatcc gcaccagatc gcgctcatgg gccgcggcgt
     1801 ttctggccag gcccgccgcc agccggccgg cgacgatgcc gaaccgctgg gcggccagtt
     1861 ccaccaggtc ggtgacccgg gtcagcgccc ggcctgccgc ctcgacgcga ccccggcgat
     1921 cctccaccgc gcgcccgccg gtgcggtgca tcctggtccc gaagtcgctg accagcgcct
     1981 tcagttcggc caacaccggc gtcgccatct cggccgccgc ggtcggggtc ggcgcccgtc
     2041 ggtcggagac gaagtcgatg agggtggtgt cggtctcgtg ccccaccgcg ctgatcagcg
     2101 ggatcgaaca ttcgaccacg gcgcgggcca gcgcctcgtc gttgaacgcc cagaggtcct
     2161 ccaccgagcc cccgccgcgc gccacgatca gcacgtcggg cctggggatc gccccgccag
     2221 gctccagggc gtcgaacccg cggatcgccg cggcgacctg ggccgcggcc gcatcaccct
     2281 gcaccaccac cggccagacg atcacccggc acggccagcg gtcgcggatg cggtgcagga
     2341 tgtcgcggat gaccgccccg gtcgggctgg tgatcacgcc caccaccgcc ggcagggagg
     2401 gcagggcctg tttccgctcg gccgcgaaca ggccctcctc ggccagccgc gccttcagcc
     2461 gttcgagctg cgccagcagg gccccgacgc cggcggcctc catggtctcg atgacaatct
     2521 ggtagcgcga gccttgcgga taggcggtga tcttgccggt gacgatcacc tccagcccct
     2581 gttcgggtcg gatcgaaagc ccgcgcaccg ggcctttcca gaccaccccg tcgatggcgg
     2641 cgcgctcgtc cttcagcgtc agatagatgt ggccgttgga atggttggtg accttggaga
     2701 tctcgccccg cagccgcacg aacccatagg cgtcctccag cgtccgcttc agcgcgaacg
     2761 ccagctccga gacggaatag ggcttggcgt tgccgtcttc ggcaggcggg gcgtcttccg
     2821 cgggagtgtc gggcgtgacg tcgctcatgg gtgcagggta gcgaccccct cagacaagga
     2881 aaaggacgcg cccggccctg cgagcggaaa accgccgcgg gccggacgcg tccccatccc
     2941 caacggataa gtaagccgcg tcgtactttg acgcggggat caga
//
LOCUS       DATAJL010000183         2159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117264,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000183 DATAJL010000000
VERSION     DATAJL010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117264"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..737
                     /locus_tag="VHN39_03480"
     CDS             <1..737
                     /locus_tag="VHN39_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815428.1"
                     /translation="HGMLYLSEDVLLGGRLLPVPLLCTGASARGLGNPASRVQAGALM
                     RAHLKTVERQLGEDRLGEALVLLKFGQVDLEFVYDYRRVRDGRRAFDLADAEAFARDS
                     ARRYAAFVRDLASETPLKLVVTAALPPALNDAALREGYMNAHIVEMHAEIGPEALRDE
                     LQKLEMPDWRVRTDLARTYNRELAAACAEYGLIFFDDFTPLIGPDGLIDPELLIWHGG
                     TDHHLCATSVAGRRAASALAVDLAKL"
     gene            complement(741..>2159)
                     /locus_tag="VHN39_03485"
     CDS             complement(741..>2159)
                     /locus_tag="VHN39_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018079804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2815429.1"
                     /translation="MLGRILGAALALTSGLGLAQAAAAADLRPDQLRFREIYKELVET
                     NTSLSVGSCTVAAAKMGARLKSAGFTDADLTYFSVPDHPKEGGVVAILKGSSKTAKPM
                     LLLGHLDVVEAKRADWTRDPFVFIEENGVYYGRGVADMKVIDATWVDTLMRFKETRYV
                     PKRTIKLALTCGEETLAAFNGADYLARNKRDLIDAEFALNEGGGGRADKDGKLQSQGV
                     QVGEKVVQQFRMETTNAGGHSSVPIRDNAIYQLAQGLLRVRDYEFPVTLNDTTRAFFA
                     KAGAGRTDPTGLAMVAISKDPADKAAEAELNKDRGFHSMLRTTCVATLLDGGHAENAL
                     PQRAGANINCRMFPGSTMEDTKARLEAAIGDPGVKLIPLQPIRAKSTPAPLDAKVLGP
                     MEKVAAKYFPGVPVIPTMSTGASDALYLIPVGIPTYGVPGFWSGPEGSGAHGLNEHMS
                     VISVMTGRDYLADLVKTLADQG"
BASE COUNT          298 a          691 c          815 g          355 t
ORIGIN      
        1 gccacgggat gctctatctg tcggaggacg tgctgctggg cggccggctg ctgcccgtgc
       61 ccctgctgtg caccggagcc tcggcgcgcg ggctgggcaa cccggcgtcg cgcgtgcagg
      121 cgggcgcgct gatgcgcgcg catctgaaga ccgtcgagcg ccagctgggc gaggatcggc
      181 tgggcgaggc cctggtgctc ctgaagttcg gccaggtgga cctggagttc gtgtacgact
      241 accggcgggt tcgcgacggg cggcgagcct tcgacctggc cgacgccgag gccttcgccc
      301 gcgacagcgc ccgccgatac gccgccttcg tgcgcgatct ggccagcgag acgccgctga
      361 agttggtggt gaccgcggcc ctgccgcccg cgctgaacga cgcggcgctg cgcgagggct
      421 acatgaacgc ccacatcgtc gagatgcacg ccgagatcgg gcccgaggcc ctgcgcgacg
      481 agctgcagaa gctggagatg ccggactggc gggtccgcac ggacctggcg cggacctata
      541 accgagagct ggcggcggcc tgcgccgagt acggcctgat cttcttcgac gacttcaccc
      601 cgctgatcgg accggacggg ctgatcgatc cggagctgct gatctggcac ggcggcacgg
      661 accaccacct gtgcgccacc agcgtcgccg ggcgccgggc ggccagcgcc ctcgcggtgg
      721 atttggccaa gctctaagcc tcagccctgg tcggccagcg tcttgaccag gtcggcgagg
      781 tagtcgcggc cggtcatcac cgagatcacc gacatgtgct cgttgaggcc gtgggcgccg
      841 gagccctccg ggccggacca gaagccggga acgccgtagg tcgggatgcc caccgggatc
      901 aggtagagcg cgtcgctggc gccggtggac atggtgggga tcaccggcac gccggggaag
      961 tatttggcgg cgaccttctc catcgggccc agcaccttgg cgtcgagcgg cgcgggcgtg
     1021 gacttggcgc ggatcggctg cagcgggatc agcttcacgc ccgggtcgcc gatggcggct
     1081 tcgagcctgg ccttggtgtc ctccatggtc gagcccggga acatccggca gttgatgttg
     1141 gcgccggccc gctggggcag ggcgttctcg gcatggccgc cgtccagcag ggtggcgacg
     1201 caggtggtgc gcagcatgga gtggaagccg cggtccttgt tgagctcggc ttcggcggcc
     1261 ttgtcggcgg ggtccttcga gatcgcgacc atggccaggc ccgtggggtc ggtgcgaccg
     1321 gcgccggcct tggcgaagaa ggcgcgggtg gtgtcgttca gggtcacggg gaattcgtag
     1381 tcgcgcaccc tcaagagacc ctgggcgagc tggtagatgg cgttgtcgcg gatcggcacg
     1441 gaggagtggc cgccggcgtt ggtggtctcc atgcgaaact gctggacgac cttttcgccg
     1501 acctgcacgc cttggctctg cagcttgccg tccttgtcgg cccggccgcc gccgccctcg
     1561 ttgagcgcga actcggcgtc gatcaggtcg cgcttgttgc gggccaggta gtcggcgccg
     1621 ttgaaggccg ccagggtctc ctcgccgcag gtgagcgcca gcttgatggt gcgtttgggg
     1681 acgtacctgg tctccttgaa gcgcatcagg gtgtcgaccc aggtggcgtc gatcaccttc
     1741 atgtcagcga cgccgcggcc gtagtagacg ccgttctcct cgatgaagac gaaggggtcg
     1801 cgggtccagt cggcgcgctt ggcctcgacc acatcgaggt ggccgagcag cagcatgggt
     1861 ttggcagtct tgctggagcc cttgaggatg gcgacgacgc cgccttcctt gggatggtcg
     1921 gggacggaga agtaggtgag gtcggcgtcg gtgaagccgg cggatttcag ccgcgcgccc
     1981 atcttcgccg cggcgacggt gcaggagccc acggagagcg aggtgttggt ctccaccagc
     2041 tccttgtaga tttcgcggaa gcggagctgg tcggggcgga ggtcggcggc tgcggcggcc
     2101 tgcgccagcc caagccccga cgtcagcgcc agagcggcgc ccaaaatcct gcccaacat
//
LOCUS       DATAJL010000184         4148 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91533,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000184 DATAJL010000000
VERSION     DATAJL010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4148
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91533"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..768
                     /locus_tag="VHN39_03490"
     CDS             <1..768
                     /locus_tag="VHN39_03490"
                     /inference="COORDINATES: protein motif:HMM:NF012863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEX2815430.1"
                     /translation="PCAALAPMPVEVGAYLAEAAKARAAHQPEPAASAQGRALYDAWQ
                     NLRLTQDFAGLCHYADQNAALPPATDRRVVFFGDSITELWDRLDPSLFTHDVINRGIS
                     GQTTAQMVGRFQEDVIALHPRAVLILAGTNDIAGNTGPTTLTWIEANIRTMAQAAKAN
                     HVRVVLASVLPAARYSWRPALEPVPQIHALNDWMAAYAKAQRLIFLDYRPPLDDGHAG
                     FKTELSPDGVHPNAKGYALMRPLAERAMREALSRKAP"
     gene            complement(778..2049)
                     /locus_tag="VHN39_03495"
     CDS             complement(778..2049)
                     /locus_tag="VHN39_03495"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2815431.1"
                     /translation="MTKGYLSARAVGLALAAGLALASVGPASGAPKGHVDPKVSSIVK
                     GDPAALGFDPAKLAAASDGLKADVAAGKIAGALLIVGRHGKVAYEQSFGTQGPGQTAP
                     ITDETIFRVFSMSKPIVSVTAMTLVEEGKLDLDAPVSKYLPEYANLRVWQADGTSVPA
                     TKPMLVRNLMSHTSGLIYGFIQPTTPISKAWAAGGENNDQVTVREYAKVIAKLPLRSE
                     PGTAWYYSRSTDVLGAVVEVAGGKPLDVLVKERVTGPLGMTDTGFWQPESQRKRFAEP
                     AKGDATVYYDYAKKPLLLSGGGGISSTAEDYLRFVLMLEGGGQYKGVRIIKTATLARM
                     RQDETTPEMQKAGLFFPGPGMGFGLGFSLVKGPPQLPGVGTFSWWGIAGTEFWVDPTN
                     DVFMVFMVQSRDLAMEYQRKNRKWIYDALVK"
     gene            complement(2148..2813)
                     /locus_tag="VHN39_03500"
     CDS             complement(2148..2813)
                     /locus_tag="VHN39_03500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815432.1"
                     /translation="MRRASLLALLALPLVVAGCGGGGGGDSAPTPVVTPLPTHFDVQP
                     CLDQVATPGATVANLVIPDTLKLDLSKPSAFPNGRTLSDPVVDIMIAYAFIDLTKHSP
                     RALADLPLDPSGNDVPLRADFPYLGLPQGTHLAPPPSGPNYNFRTDPVSMYVRVDRMG
                     MPAVATLLIGTSAKTAYNDDDPSTDATRKYVSEIQNDLTGLTNALAKDFVARGFALCA
                     KGA"
     gene            complement(2813..3445)
                     /locus_tag="VHN39_03505"
     CDS             complement(2813..3445)
                     /locus_tag="VHN39_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815433.1"
                     /translation="MALAGVLAVATAFWANDWTVLAADHLDPPARTDPAVDSTPDKAA
                     DIADVYMWHTDTDLVIAVTFAGPSSATLPATYDRDILYTINISNAGFPTDPEIQVRFR
                     FGQDANGNWGIQLVGLPDSPDPLVGPVEQTLTRSGMLIRAGLYDDPFFFDLQGFRDTK
                     STGNLSIRNDRNFFAGLNDTAIVLQFPIPLVKGTAPLNVWVTTARFGGQI"
     gene            3660..>4148
                     /locus_tag="VHN39_03510"
     CDS             3660..>4148
                     /locus_tag="VHN39_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815434.1"
                     /translation="MIVRAVLLAIVTAGLLVAAQALVRHPAPAGAPGAHRRPSHGAPL
                     DYAQALAHADESLAGGQELARTRAAEWLVQEKIANAYMSRARLTGSFDDYAAAQAALD
                     VGFAHAPPGGGPQLTQAVLAFSLHRLGRTAQALDVIDHYAVPAEFEIAEEANAMHGDV
                     AFY"
BASE COUNT          623 a         1507 c         1382 g          636 t
ORIGIN      
        1 ccctgcgcgg cgctcgcgcc catgccagtg gaagtcggcg cctacctggc cgaggccgcc
       61 aaggcccgcg ccgcccacca gccggagccc gccgcctcgg cccagggccg cgcgctctac
      121 gacgcctggc agaacctgcg cctcacccag gacttcgccg gcctttgcca ctacgccgat
      181 cagaacgccg ccctgccgcc ggccaccgat cgccgcgtcg tcttcttcgg cgactcgatc
      241 accgagctct gggaccggct cgacccgagc ctcttcaccc atgacgtcat caaccgcggg
      301 atcagcggcc agaccaccgc ccagatggtc ggccgcttcc aggaggacgt gatcgccctt
      361 cacccgcgcg cggtcctgat cctggcgggg accaacgaca tcgccggtaa caccggcccc
      421 acgacgctca cctggatcga agccaacatc cgcacgatgg cgcaggccgc caaggccaac
      481 cacgtgcgcg tggtcctggc atcggtcctg cccgccgccc gctacagctg gcgcccagcg
      541 ctggagcccg tgccgcagat tcacgcgctc aacgactgga tggccgctta cgccaaggcc
      601 cagcgcctga tcttcctgga ctaccgcccg ccactggacg acgggcacgc cggcttcaaa
      661 accgaactca gccccgacgg cgtacacccc aacgccaagg gttatgcgct gatgcgtccg
      721 ctggccgagc gcgccatgcg cgaagccctg agccggaagg cgccctgaac cgcgccgcta
      781 cttcaccagc gcgtcgtaga tccacttccg gttcttgcgc tggtactcca tggcgaggtc
      841 ccggctctgc accatgaaga ccatgaagac gtcgttcgtc gggtccaccc agaactcggt
      901 cccggcgatg ccccaccagg agaaggtgcc gacgcccggc agttgcggcg ggcccttcac
      961 caggctgaag cccaggccga agcccatgcc gggacccggg aagaacaggc ccgccttctg
     1021 catctccggc gtcgtctcgt cctgccgcat ccgcgccagc gtcgcggtct tgatgatgcg
     1081 gacgcccttg tattgcccgc cgccctccag catcagcacg aagcgcagat agtcctccgc
     1141 ggtggacgaa atcccgccgc cgcccgacag caacagcggc ttcttggcgt agtcatagta
     1201 gacggtcgca tcgcccttcg ccggctcggc gaagcgcttg cgctggctct ccggctgcca
     1261 gaagccggtg tcggtcatgc ccaggggccc ggtcacccgc tccttcacca acacgtccag
     1321 cggcttgccg ccggccacct ccaccaccgc gcccaggacg tcggtggagc gcgaatagta
     1381 ccaggccgtc ccgggctcgc tgcgcagcgg cagcttggcg atcaccttgg cgtactcgcg
     1441 caccgtcacc tggtcgttgt tctcgccgcc cgccgcccag gccttggaga tcggcgtggt
     1501 cggctggatg aacccataga tcaggccgga ggtgtggctc atcaggttgc gcaccagcat
     1561 cggcttggtg gccgggacgc tcgtcccgtc cgcctgccag acccgcaggt tcgcgtactc
     1621 cggcaggtac ttggagaccg gggcgtcgag gtcgagcttg ccctcctcaa ccagggtcat
     1681 ggccgtcacc gagacgatcg gcttcgacat cgagaagacg cggaagatcg tctcgtccgt
     1741 gatcggcgcc gtctggcccg gcccttgggt cccgaagctc tgttcgtagg ccaccttgcc
     1801 gtgccgtccg acgatcagaa gggcgccggc gatcttgccc gcggccacgt ccgccttcag
     1861 gccgtcgctg gccgccgcga gcttcgcggg atcgaagccc aacgccgccg gatcgccctt
     1921 gacgatcgac gagaccttcg gatcgacatg ccccttcggc gcccccgaag ccggccccac
     1981 cgaggccagc gccagccccg ccgccagcgc caggcccacg gcccgcgcgc tcagatatcc
     2041 cttggtcatg tgatgtgcct cccgccgcga cagttggccc ggttcgggcg ccgctggcaa
     2101 cggtcgggtg tgcagccgcc tcgcctcgga ggacgggccg cgcggcctca ggcgcccttg
     2161 gcgcacaggg cgaagcccct ggcgacgaag tccttcgcca gcgcattggt gagcccggtc
     2221 aggtcgttct gtatctccga cacatatttg cgcgtcgcgt cggtcgacgg gtcgtcgtcg
     2281 ttgtaggcgg tcttggctga ggtgccgatc aggagggtgg ccacggccgg catgcccatc
     2341 cggtcgaccc gcacgtacat cgacacggga tcggtgcgga agttgtagtt gggcccgcta
     2401 ggcggtggcg cgaggtgggt tccctgcggt aagccgaggt aggggaaatc ggcgcgcagc
     2461 ggcacgtcgt tgcccgacgg atcgagcggc aggtcggcca gcgccctcgg cgaatgcttg
     2521 gtcaggtcga tgaaggcata ggcgatcatg atatcgacga ccgggtccga gagcgtgcgc
     2581 ccgttgggga aagccgaggg tttgctgagg tcgagcttca aggtgtcggg gatgaccaga
     2641 ttggccaccg tggcgcctgg ggtcgccacc tggtccaggc agggctggac gtcgaagtgg
     2701 gtcggcagtg gcgtgacgac cggcgtcggg gcgctgtctc ccccgccgcc cccgccgcat
     2761 ccggccacga cgagcggcag cgccaggagc gccagcaggg aggcgcggcg catcagatct
     2821 gccctccgaa gcgcgcggtg gtcacccaga cgttcaaggg cgccgtgccc ttgaccaggg
     2881 ggatcgggaa ctgaagcacg atggcggtgt cgttcaggcc ggcgaagaag ttgcggtcgt
     2941 tgcggatgct gaggttgccc gtggacttgg tgtccctgaa cccctgaagg tcaaagaaga
     3001 acgggtcgtc atagaggccg gcccggatca gcatgccgct gcgcgtcagg gtctgctcga
     3061 ccgggcctac cagcggatcg ggactgtccg gcaggccgac gagctggatg ccccagttgc
     3121 cgttggcgtc ctggccgaac cggaagcgga cctggatttc gggatccgtg gggaaacccg
     3181 cgttggagat gttgatcgtg tagaggatgt cgcggtcgta ggtggccggc agggtggcgg
     3241 acgacggccc ggcgaaggtc accgcgatca ccaggtccgt atctgtgtgc cacatgtaga
     3301 cgtcggcgat atcggcggcc ttgtcgggcg tggagtcgac ggccgggtcg gtgcgggccg
     3361 gtgggtccag gtggtcggcc gccagcactg tccaatcgtt ggcccagaac gccgtggcca
     3421 ccgccagcac gccggctaag gccaagctcc gcttcaatgg ttgcacgtgg acccccccac
     3481 atatcgcggc gtgcatcgcc cgccaccgat aacgctagtc accgaccgtg gttggcgcaa
     3541 cggtttcgag tccgcgcggg atggctgaca cgccggcctg ggctgctatc gtggcgctgg
     3601 gcgccgcttg cccggagcct tgaaccgccc tggccgcgcc cgctttcctc cgcaagcctg
     3661 tgatcgtccg ggccgtcctg ctggcgatcg tcaccgccgg gctgctcgtc gcggcgcagg
     3721 cgctggtccg ccatccagcg cccgctggcg cgcccggcgc ccaccgccga ccgagccacg
     3781 gggcgccgct cgactacgcc caggccctgg cccacgccga cgaatccctg gcgggcggcc
     3841 aggagctcgc ccgcacccgc gccgcggaat ggctggtgca ggagaagatc gccaacgcct
     3901 acatgtcacg cgcgcgcctc accggctcct tcgacgacta cgccgccgcc caggccgccc
     3961 tggacgtcgg cttcgcccac gcccctcccg gcggcggccc gcagctcacc caggcggtcc
     4021 tggccttcag cctgcacagg ctcggccgca cggcgcaggc cctcgacgtc atcgaccact
     4081 acgccgtccc ggccgagttc gagatcgccg aagaagccaa cgccatgcat ggcgacgtgg
     4141 ccttctac
//
LOCUS       DATAJL010000185         3272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54355,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000185 DATAJL010000000
VERSION     DATAJL010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3272
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54355"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..415
                     /locus_tag="VHN39_03515"
     CDS             <1..415
                     /locus_tag="VHN39_03515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815435.1"
                     /translation="MQVQLSGKIHAVPSRMPGQVEVHHLPAGKYEVYKVMVSRSTYLG
                     HGALVVSKFSVPFEIQPGKTTYVGSFEAAPTLDHTPEHTILFREIAKGIRIFHRDAHE
                     RDVALAQAKKPILGELIVQVADAAEPEQDEYAPLP"
     gene            complement(433..1158)
                     /locus_tag="VHN39_03520"
     CDS             complement(433..1158)
                     /locus_tag="VHN39_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2815436.1"
                     /translation="MQPADVERLERDTVAAVAPPEVLEIGGWLVPLDNGTIGRAKSAV
                     PLRHDIGPDAIGEIEAVYRDRGLKPRFRIADVPSLDAVCAELSRRGFAPEQPTIFETG
                     SIVQLAVFSEASARILDKPDDAWAAVFLGDGFDPGDGAHRVAALTRSPGAIYGAAGAG
                     GATQAVGVMSFGAAWAGVHGMRTAPAHRGQGLAAAILGAMGREARARGVEQVFLQVEE
                     ANPARRIYRKAGFSAAWRYHYWR"
     gene            1302..1532
                     /locus_tag="VHN39_03525"
     CDS             1302..1532
                     /locus_tag="VHN39_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815437.1"
                     /translation="MRTRIAIAALIYMLVQGVLFGIGVIAILASPLVSSAQTLIPWMI
                     VATIPISVPIAWMIAPRLRARFGRTHPAVSPR"
     gene            complement(1529..1984)
                     /gene="smpB"
                     /locus_tag="VHN39_03530"
     CDS             complement(1529..1984)
                     /gene="smpB"
                     /locus_tag="VHN39_03530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEX2815438.1"
                     /translation="MAKPIAENRRARFDYFLEQTFEAGLALTGSEGKSLRNGKANIAE
                     SYAAVEGDEIILVNADIPPYAQSGPHFNHEPRRHRKLLLKRKEIDKLIGAVQRDGRTI
                     IPLKLFWNERGLAKLEVALAKGKKDHDKREATAARDWQRDKARLMKDHS"
     gene            complement(1984..2868)
                     /gene="dapA"
                     /locus_tag="VHN39_03535"
     CDS             complement(1984..2868)
                     /gene="dapA"
                     /locus_tag="VHN39_03535"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEX2815439.1"
                     /translation="MSDPMLKGVLPALVTPFRDGVVDEDAFVRLVERQIAGGVHGLVP
                     VGTTGESATLSHDEHRRVVELCIKTAAGRVPVVAGAGSNSTAEAIELVRHAKTVGADA
                     ALVVTPYYNRPSQEGLYAHYAAINEAVQLPVLVYNVPSRTAGDISNDTLARLSKLPNI
                     VGIKDATGDLARASQQRLMCGEGWTMLSGNDDSALGYLAHGGHGCISVTANVAPEQVA
                     AFYNDALSGQWQGALQGQDRLIRLHKALFADASPSPTKFALAHLGLCAEDARLPIVAA
                     SEASRTEVLAAMRDAGVI"
     gene            2994..>3272
                     /locus_tag="VHN39_03540"
     CDS             2994..>3272
                     /locus_tag="VHN39_03540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815440.1"
                     /translation="MHKIARKAFLIAGVAVMASVAARAQPADPLGDLIASASKSTPLD
                     TPAPSHTLSHALSDRDVTLFRQALEAARRANVNEARSAIAEMTDPLARK"
BASE COUNT          501 a         1109 c         1131 g          531 t
ORIGIN      
        1 gatgcaagtc cagctttccg gtaaaataca cgcggtgcct tcaaggatgc ccggccaggt
       61 cgaggtccat cacctgccgg cgggcaagta cgaggtctac aaggtcatgg tgagcagatc
      121 gacctaccta ggccacggcg cgcttgtcgt gagcaagttt tccgtcccgt ttgagattca
      181 gcccggaaaa acgacctacg tcgggagttt cgaagccgcc cctacgctcg accacacgcc
      241 ggaacacacc atattgttcc gggagatcgc caaaggcatc cggatctttc atcgcgacgc
      301 ccatgaacgc gacgtcgcgc tggcgcaggc caagaagccg atacttggcg agctcattgt
      361 ccaggtggct gatgccgccg agccggagca ggacgagtac gccccgctgc cttagggcgg
      421 aatagcggtg agctaccgcc agtagtggta gcgccacgcc gcgctgaaac cggccttgcg
      481 atagatacgc cgcgcgggat tggcctcctc gacctgcagg aagacctgct cgacgccgcg
      541 cgcgcgggct tcccggccca tggcgcccag gatggcggcg gccaggccct ggccgcgatg
      601 ggccggcgcg gtgcgcatgc cgtggacgcc cgcccaggcc gcgccgaaac tcataacgcc
      661 caccgcctgg gtcgctccgc ccgcgcccgc cgcgccatag atcgcgcccg gcgagcgggt
      721 gagcgccgcg acgcggtgcg cgccgtcgcc cggatcgaag ccatcgccca ggaagaccgc
      781 ggcccaggca tcgtcgggct tgtcgaggat gcgcgcagaa gcctctgaaa agacggcgag
      841 ttggacgata gagccggtct cgaagatagt cggctgctcg ggcgcgaacc cccgccggct
      901 gagctcggcg cagaccgcgt ccagcgacgg gacatcggcg atgcggaagc ggggcttcag
      961 gccccggtcg cggtagaccg cctcgatctc gccgatggcg tcggggccga tgtcgtggcg
     1021 caagggaacc gcgctcttgg cccggccgat ggtcccgttg tcgaggggga ccagccagcc
     1081 gccgatctcc agcacttcgg gcggagcgac cgcggccacg gtgtcgcgtt ccaggcgctc
     1141 gacgtccgca ggctgcatcc ggaggagtcc tcgaatccgt gacccgcctc ttctgaccgt
     1201 tccgcccctt cgagaaaata gggatcgcgg gttttccagc gacggaactg ccaggcccgg
     1261 ccccccgttc ggtgaagggc agccaaggaa ggccatccgc catgcgtacc cgaatagcca
     1321 tcgcggccct gatctacatg ctggtgcagg gcgtgctgtt tggcattggc gtgatcgcga
     1381 tcctcgcctc gccgctcgtg tcgagcgccc agacgctcat tccgtggatg atcgtggcga
     1441 ccatcccgat ttcggttccg atcgcctgga tgatcgcccc gcggctgcgg gcccggttcg
     1501 gccgcacgca cccggccgtc agtccccgct agctgtgatc cttcattagc cgggccttgt
     1561 cgcgctgcca gtcgcgggcc gcggtggctt cgcgcttgtc gtggtccttc ttgcccttgg
     1621 ccagcgccac ctcgagcttg gccagaccgc gttcgttcca gaacagcttc agcgggatga
     1681 tcgtgcgacc gtcgcgctgg acggcgccga tcagcttgtc gatctccttg cgcttcagca
     1741 gcagcttccg atgacggcgc ggctcgtgat tgaagtgcgg gccgctctgc gcatagggcg
     1801 ggatatcggc gttgacgagg atgatctcgt cgccctccac cgccgcatag ctctcggcga
     1861 tgttggcctt gccgttgcgc agggatttgc cctcggagcc ggtgagcgcc aggcccgcct
     1921 cgaaggtctg ctccaggaag tagtcgaacc gcgcgcgccg gttctcggcg atgggcttgg
     1981 ccatcagatc acgccggcgt cccgcatggc ggcgagcacc tcggtgcggg aggcctcgga
     2041 cgccgcgaca atcggcaggc gggcgtcctc ggcgcagagg cccaggtggg cgagcgcgaa
     2101 cttggtgggc gacggcgagg cgtcggcgaa cagcgccttg tgcagccgga tgaggcggtc
     2161 ctggccctgg agagcgccct gccactggcc ggagagcgcg tcgttgtaga aggcggcgac
     2221 ctgctcgggc gccacattgg cggtcaccga gatacagcca tggccgccgt gggccaggta
     2281 gcccagggcg gaatcgtcgt tgcccgagag catggtccag ccctcgccgc acatcagccg
     2341 ctgctggctg gcgcgggcga ggtcgccggt ggcgtccttg atgccgacga tgttcggcag
     2401 cttggaaagg cgggccaggg tgtcgttgga gatatcgccc gcagtccgcg agggcacgtt
     2461 gtagaccagc accggcagct gaacggcctc gttgatcgcc gcgtagtggg cgtagaggcc
     2521 ctcctggctg ggacggttgt agtacggcgt caccaccagg gcggcgtccg cgcccacggt
     2581 cttggcgtgg cggaccagct cgatggcctc ggcggtcgag ttggagcccg cgccggccac
     2641 caccggcacg cggccggcgg cggtcttgat gcagagctcc accacccggc gatgctcgtc
     2701 atggctgagg gtggcggact cgccggtggt gccgaccggc accaggccat gcacgccgcc
     2761 ggcgatctgg cgctccacca ggcgcacaaa ggcgtcctcg tcgacgacgc cgtcgcggaa
     2821 cggggtcacg agggccggga gcacgccctt gagcatcggg tctgacatgg aaagcaaatt
     2881 gccgtgattg ggcgcttgtt gaagcggtgt tcagattctc cgcgacaata tggtggggtg
     2941 ggcatcgccc gcaatgtcct attgattcgg ctggagttct gttgggacgt ccgttgcaca
     3001 agattgctcg caaggccttt ctgatcgccg gcgtcgccgt gatggcgagc gtggccgcgc
     3061 gcgcccagcc ggccgatccg ctgggcgacc tcatcgcgag cgccagcaag tcgaccccgc
     3121 tggacacgcc ggcgccgtcg cacaccttgt cccacgccct ctccgaccgc gacgtgaccc
     3181 tgttccgcca ggcgctcgag gccgcgcggc gcgccaacgt caacgaggcg cgctccgcca
     3241 tcgccgagat gaccgatccc ctcgcccgca ag
//
LOCUS       DATAJL010000186         3034 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28701,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000186 DATAJL010000000
VERSION     DATAJL010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28701"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1100
                     /locus_tag="VHN39_03545"
     CDS             <1..1100
                     /locus_tag="VHN39_03545"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2815441.1"
                     /translation="PEQFFKGKIAFIGSVSRSAHADSDTVKEDMHSTPLRFTAGHYDG
                     TPGVEVHVHALSQMLAGDRIRMPSALLTGLIVFVAALGGAALGQGATRWWLTIVVVLG
                     GLAAATAVSFAVFHFFAFIAPMTAPSLSFAFAFFVMSRLEAAELQSQRAFYSSTLERY
                     LAPQVIDRIVEGREAVKIGAEAREITVMVSDLENFSNLVATLPVDTFATVINAYFDGL
                     IEILWKHEAMIDKMTGDGLIVLFGAPVAFTDHADRALACVREIDLWAEEYRKQMLEAH
                     GIFGHTRMGLDSGVGLVGNFGGERRFNYTAYGEVVVIAARLEAANKTFGTRILFSAET
                     LRLAPGAGDTRPVGEIDLKGVPIPIEAYTLI"
     gene            complement(1085..2080)
                     /locus_tag="VHN39_03550"
     CDS             complement(1085..2080)
                     /locus_tag="VHN39_03550"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX2815442.1"
                     /translation="MKIWSLQALRFWAALGVVFFHSYVATLQMSHRLGMFGEAGAAFG
                     RVGVDVFFVLSGVIITLTSQGLTAGEFMRRRALRILPIYGLLTVVYLTAGAFYGGVGW
                     REAFTSLTLWPALDRIVEPRLQVAWTLCFEMLFYAATALVLWRRKLVWLVLAVFAAAL
                     AIRSGPVLRYVGNPIIIEFLMGVALARLPKWRGAVAFIPVGLAVIWVFGTTGYPLELG
                     VTDFLNGTMAWRRVLLLGLPAALIVWGALQIDVRQGLLTYLGDASYSLYLTHLPVVVS
                     VAWVLCRYTSAPPDAVAIVAAAASILLAWRFHELFEKPMLAWFRRPREAGVQIRV"
     gene            complement(2133..>3034)
                     /locus_tag="VHN39_03555"
     CDS             complement(2133..>3034)
                     /locus_tag="VHN39_03555"
                     /inference="COORDINATES: protein motif:HMM:NF019912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815443.1"
                     /translation="FHPLYHYAFVTDAEEGLIAVNVDTLSDGDPRNNSLRRAMTWNPG
                     GLLKGARHITLGGHYAYIAADAGLVVVDLNDPLKPRHVTTLALPDMRASALQFRYLFV
                     TDARGLEVVDVTRLEHPVLVAGATVPLADARRVYVARTYAYVAAKKDGLVILDVKQPE
                     HPRLYQKVDFGGRLNDAEDVVVGSTNASLFAYVADGRNGMKVIQLTSPATQPNFYGFS
                     PGPKPELIAWAKTAAPALALSKGLDRDRAVDETGHQIAVFGRLGARPFNRPEMERFFI
                     DAFDQPYRVSDDPDLAAWLSAGR"
BASE COUNT          531 a         1009 c         1036 g          458 t
ORIGIN      
        1 tgccagagca gttcttcaag gggaagatcg ccttcatcgg ctcggtgagc cgctcggccc
       61 atgccgattc cgacactgtg aaggaggaca tgcattccac gccgctgcgc ttcaccgccg
      121 gccactatga cgggacgccc ggcgttgagg tgcacgtgca tgcgctatcg cagatgctgg
      181 ccggcgaccg gatcaggatg ccgagcgcgc tgctgaccgg gctgatcgtc tttgtcgcgg
      241 cgctcggcgg cgcggccctg ggtcagggcg ctacgcgctg gtggctgacg atcgtggtcg
      301 ttctgggggg actggcggcc gcgaccgcgg tctccttcgc ggtcttccat ttcttcgcct
      361 tcatcgcgcc gatgaccgcg ccgtccttga gcttcgcctt cgccttcttc gtgatgagta
      421 ggctcgaggc cgccgagctg cagagccagc gggccttcta ttcctcgacg ctcgaacgct
      481 atctcgcacc gcaggtcatc gaccgcatcg tcgagggccg cgaggcggtg aagatcggcg
      541 ccgaagcccg cgagatcact gtgatggtct ccgacctgga gaacttctcg aacctggtgg
      601 cgactctgcc ggtcgacacc ttcgccacgg tgatcaacgc ctacttcgac ggcctgatcg
      661 agatcctgtg gaagcacgag gcgatgatcg acaagatgac cggcgacggc ctgatcgtgc
      721 tgttcggggc ccctgtcgcc ttcaccgacc acgccgaccg ggcgctggcc tgcgtgcgcg
      781 agatcgacct ctgggccgag gaataccgca agcagatgct ggaggcgcac ggcatcttcg
      841 gccacacacg catggggctg gattccggcg tcggcctggt cggcaacttc ggcggcgagc
      901 gccgcttcaa ctacaccgcc tatggcgagg tggtggtgat cgccgcgcgc ctggaggccg
      961 ccaacaaaac cttcggcacc cgcatcctgt tctccgccga gacccttcgg ctggccccgg
     1021 gcgccggcga cacccgcccc gtgggcgaga ttgacctcaa gggtgtcccg atccccatcg
     1081 aggcctacac cctgatctga actccagcct cgcgcggcct gcggaaccag gcgagcatcg
     1141 gcttctcgaa cagttcatgg aaacgccagg cgagcaggat gctggcggcg gcggctacga
     1201 tcgcgaccgc gtccggcggc gctgaggtgt accggcaaag cacccaggcg acggacacca
     1261 cgaccgggag gtgcgtgaga tagagcgaat aggaggcgtc tccgagatag gtgagcagcc
     1321 cctgccggac gtcgatctgc agcgcgcccc agacgatcag ggccgccgga agacccagca
     1381 acagcacgcg gcgccaggcc atggtcccgt tcaggaagtc cgtcaccccg agctccagcg
     1441 gatagccagt cgttccgaag acccagatca cggcgagacc cacagggatg aacgcaacgg
     1501 cgccgcgcca tttcggcagg cgcgccaggg cgacccccat cagaaactcg atgatgatgg
     1561 ggttcccgac gtagcgcagg acaggacccg agcggatcgc cagcgcggcc gcgaagacgg
     1621 cgagcaccag ccagaccagc ttgcgtcgcc acaggacgag cgcggtcgcc gcatagaaca
     1681 gcatctcgaa gcagagcgtc caggcgacct gcagcctggg ctcgacgatc cggtcgagcg
     1741 ccggccacag ggtgaggctc gtgaacgcct cgcgccaacc gacgccgccg tagaaggcgc
     1801 ctgcggtcag atagacgacg gtcagcagtc cgtagatggg caggatccgc agggcccgcc
     1861 gcctcatgaa ctctccggcg gtgaggcctt gcgaggtcag ggtgataatc acgcccgaga
     1921 gcacgaagaa cacatccacg cccacacgac cgaacgccgc cccagcctcc ccgaacatgc
     1981 cgagcctgtg ggacatctgc agggtcgcga catagctgtg gaagaagacg acgccgagcg
     2041 ccgcccaaaa cctcagagcc tgcagggacc agatcttcat tcggggatcg tatcccgcaa
     2101 acctgaccac atcgctgacg gacagcgctt atctaccgcc cggccgaaag ccacgccgcg
     2161 aggtcggggt cgtcgctgac ccggtacggc tggtcgaagg cgtcgatgaa gaagcgctcc
     2221 atctccggcc ggttgaaggg ccgggcgccg aggcgtccga acaccgcgat ctggtggccg
     2281 gtctcgtcga cggcgcggtc gcgatcgagg cccttggaga gggcgagcgc cggggccgcg
     2341 gtcttcgccc aggcgatcag ctcgggcttg ggcccaggcg agaagccgta gaagttgggc
     2401 tgggtggccg ggctggtgag ctggatcacc ttcatgccat tcctgccgtc agccacataa
     2461 gcgaagagcg aggcgttggt ggagcccacc accacgtcct cggcgtcgtt cagccggccg
     2521 ccgaaatcga ccttctgata gaggcgggga tgctccggct gctttacgtc gaggatgacc
     2581 aggccgtcct tcttggcggc cacgtaggcg taggtgcggg ccacgtagac gcgccgcgcg
     2641 tcggcgaggg gcacggtggc gccggcgacc aggaccggat gctccaggcg ggtgacgtcc
     2701 accacttcca ggccccgcgc atcggtgacg aagaggtagc ggaactgcag ggccgaggcg
     2761 cgcatgtcgg gcagcgccag cgtcgtcacg tgccggggct tcagcgggtc gttcagatcc
     2821 accaccacca ggccggcgtc ggcggcgata taggcgtagt ggccgcccag ggtgatgtgc
     2881 cgcgcgccct tcaagaggcc gcccgggttc caggtcatgg cgcgccgcag gctgttgttg
     2941 cgcgggtcgc cgtccgacag cgtgtcgacg ttgaccgcga tcagcccttc ctcggcatcg
     3001 gtcacgaagg cgtagtggta gagcgggtgg aagg
//
LOCUS       DATAJL010000187         1949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_15951,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000187 DATAJL010000000
VERSION     DATAJL010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15951"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1949
                     /gene="glnD"
                     /locus_tag="VHN39_03560"
     CDS             <1..>1949
                     /gene="glnD"
                     /locus_tag="VHN39_03560"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008773 - [protein-PII]
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0018177 - protein uridylylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="[protein-PII] uridylyltransferase"
                     /protein_id="HEX2815444.1"
                     /translation="FLKEVQAGTAAQFVAAKLKERDDRHAKAGSTRYMVEPNVKEGKG
                     GLRDLNTLFWIAQYLHPGQSIEKVLQLEMFERREVRAFIQAFDFLWAVRAHLHFTTGR
                     PEERLTFDLQPELARRMGYGDRGDAPAVERFMRRYFLIAKEVGALTRVFAAKLEAERV
                     KVAPRGLSRLLPARRAKRKPLDEPGFHEISGRLNIDDAGIFEHDPVNLLRMFKIADER
                     NLDLHPDAFTAATRSLPLITSAVRRDRHAAKVFLSILAHGRDPQRTLTLMTEAGVLGR
                     YLPEFGRIVAQMQFNMYHSYTVDEHTLRAVGVIAEIDAGRFAEDHPLSTAVMPLIVDR
                     EALFLAMLLHDTGKGGAGGQEKAGARAARSACERLGLERSKIELVAWIVEHHLVMSDT
                     AQKRDISDPRTVTDFAGIVATPERLRLLLVLTVADIRAVGPGVWNGWKGQLLRELYGA
                     TEAVFRGGRGSDSAAALKRYHENAAYDARVRVAKADPASEAWADAMEDAYFSAFSEAE
                     VLAHAALSRRAGNGAAAEGRVRADRDAAEVVVAATDRQRLFVDLAAAIVGAGANVVGA
                     RVFTSNFGQALDVFYLQDAAGQPYGADNARSLTRLIEALEAAARGEAVRQEARRPTDL
                     GRAAAFSIEPAVMLDNDASETSTVV"
BASE COUNT          284 a          690 c          680 g          295 t
ORIGIN      
        1 gtttctgaag gaggtgcagg ccggcaccgc cgcccagttc gtcgccgcca agctgaagga
       61 gcgggacgac cgtcacgcca aggccggctc gacccgctac atggtcgagc ccaatgtgaa
      121 ggagggcaaa ggcgggcttc gcgacctcaa caccctgttc tggatcgccc agtacctgca
      181 ccccggccag tcgatcgaga aggtgctgca gctggagatg ttcgagcgcc gcgaagtgcg
      241 ggccttcatc caggccttcg atttcctgtg ggccgtgcgc gcccacctgc acttcaccac
      301 cggccggccc gaagagcgcc tgaccttcga cttgcagccg gagctggcgc gccggatggg
      361 ctatggcgac cggggcgacg cgccggcggt cgaacggttc atgcgccgct acttcctgat
      421 cgccaaggag gtcggagcgc tgacccgggt cttcgccgcc aagctggagg ccgagcgggt
      481 gaaggtggcg ccgcgcggcc tctcgcgcct gctgccggcg cggcgggcga agcgcaaacc
      541 gctcgacgag cccggcttcc acgagatttc cggccgcctc aacatcgacg acgccggcat
      601 cttcgagcac gacccggtca acctgttgcg gatgttcaag atcgccgacg agcgcaatct
      661 ggatctgcat ccggacgcct tcacggccgc cacgcggtcc ctgccgctga tcacctcggc
      721 ggtgcgccgg gatcgccatg cggccaaggt gtttctgtcg atcctggccc acggccgcga
      781 tccgcagcgg acgctcacgc tcatgaccga ggccggggtg ctcggccgct acctgccgga
      841 gttcgggcgt atcgtcgccc agatgcagtt caacatgtac cactcctaca cggtggacga
      901 gcacacgctc agggccgtgg gcgtgatcgc cgaaatcgac gctgggcgct tcgccgagga
      961 ccacccgctc tccaccgccg tcatgccgtt gatcgtcgac cgcgaggccc tgttcctggc
     1021 catgctgctg cacgacaccg gcaagggcgg cgcgggcggc caggagaagg ccggcgcccg
     1081 ggcggcgcgg tcggcctgcg aacggctggg tctggagcgc tcgaagatcg agctggtggc
     1141 ctggatcgtc gagcatcacc tggtgatgag cgacaccgcc cagaagcgcg acatctccga
     1201 cccgcgcacg gtcaccgact tcgccgggat tgtcgccacg ccggagcggt tgcgcctttt
     1261 gctggtgctg accgtggccg atatccgcgc tgtcggcccc ggcgtctgga acggctggaa
     1321 gggccagctg ctgcgcgagc tctatggcgc caccgaagcc gtcttccgcg gcggccgggg
     1381 ctcggactcg gcggcggcgc tgaagcgcta tcacgagaac gccgcgtacg acgcccgcgt
     1441 gcgcgtcgcc aaggccgatc ctgcgtccga ggcctgggcc gacgccatgg aggatgccta
     1501 tttctccgcc ttctcggagg ccgaggtgct ggcccacgcc gcgctgtccc ggcgcgccgg
     1561 gaacggggcc gcggccgagg ggcgggtccg cgccgaccgt gacgccgccg aggtggtagt
     1621 ggccgccacc gaccgccaac ggctcttcgt cgatctggcg gcggccattg tcggagccgg
     1681 ggccaatgtg gtgggggcgc gggtcttcac ctccaacttc ggccaggcgc tggacgtctt
     1741 ctatctgcag gacgcggccg gccagcccta tggcgccgac aatgcgcgct cgctcacccg
     1801 cctgatcgag gccctggagg cggccgcccg cggcgaggcc gtacggcagg aggctaggcg
     1861 ccccaccgac ctcggccgcg ccgcggcctt ctccattgaa cccgcggtga tgctcgacaa
     1921 tgacgcgtct gagacctcga ccgtggtgg
//
LOCUS       DATAJL010000188         2026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28739,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000188 DATAJL010000000
VERSION     DATAJL010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28739"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            123..812
                     /locus_tag="VHN39_03565"
     CDS             123..812
                     /locus_tag="VHN39_03565"
                     /inference="COORDINATES: protein motif:HMM:NF012705.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="squalene/phytoene synthase family protein"
                     /protein_id="HEX2815445.1"
                     /translation="MSEDAPDPDTGDLDAQIRRVDPDRWLSSRFIGNVEARADVIALY
                     AFDYELARAPKVASNALLGEMRLTWWREALEEMFEDRAVRQHPAAQALARAVARRGLK
                     REGLETLIDARYRELDPAAMSEAEVLDWARDTGGLVAQLAAQVLDPATEARMALAGGS
                     AWALGKRLAEAPDLRPTFLKVIHAARSASRNLSVAAFPAVAHAALAGRPASNNFARRL
                     RLTIAVARGKI"
     gene            complement(850..1179)
                     /locus_tag="VHN39_03570"
     CDS             complement(850..1179)
                     /locus_tag="VHN39_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815446.1"
                     /translation="MTTKFEAELIRHLAEPAEMAGIDVSRDLAARLERQAGTRRRVAL
                     AAGGACTILTALAVVAGFGIADHGMPRAGLDPANASLLWLPFAILSTLLTLAGATLSA
                     SLIRTMR"
     gene            complement(1136..1711)
                     /locus_tag="VHN39_03575"
     CDS             complement(1136..1711)
                     /locus_tag="VHN39_03575"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2815447.1"
                     /translation="MLPADPERTRVLLAASGDIAAFTRLVRDHQGYIGGLLRRACGDA
                     ALAEDLTQMAFFKAWRRLGSLRDPDAFRTWLRRIALNLLTDAMRRGSIAAVTFHDEIA
                     QAAQPSPEPALLRGLAIDRALARLAIAPRSCIVLAYGEGMSHGEIAAALRLPLGTVKS
                     HITRGLATLRLILEAQDDDHEVRSRAHSPSG"
     gene            complement(1723..>2026)
                     /locus_tag="VHN39_03580"
     CDS             complement(1723..>2026)
                     /locus_tag="VHN39_03580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815448.1"
                     /translation="HEALGRTQPGGLAIEKGLLTDANSIADLRQPAGLSSAERLMVLG
                     MLVLFASGGLVAGGFALIVLTGARPAPLFALAAFSTALGAGLIYCGRWVRRTRARP"
BASE COUNT          314 a          696 c          734 g          282 t
ORIGIN      
        1 gccgatgctg gtcgccatga ccatgtcgca gaccatcttc ggctgaatcg gctggaaaac
       61 gacgatgtga aggcccgcct taaccggcgg gccttttcat aggcgatatg tcgatgagcc
      121 agatgagcga agacgcgccc gaccccgaca ccggcgatct cgacgcccag atccgcaggg
      181 tcgaccccga ccgctggctc tccagccggt tcatcggcaa tgtcgaagcc cgcgccgacg
      241 tgatcgcgct ctacgccttt gactacgaac tggcccgcgc acccaaggtg gcctccaacg
      301 ccctgctggg cgagatgcgg ctgacctggt ggcgcgaggc cttggaggag atgttcgagg
      361 atcgtgctgt gcggcagcac cccgcggccc aggccctggc ccgcgccgtc gcccgtcggg
      421 gcctgaaacg agagggcctg gagaccctga tcgacgcccg ctaccgggag ctcgatcccg
      481 ctgcgatgag cgaggccgaa gtgctggact gggcgcgcga caccggtggg ctggtggccc
      541 agctggcggc ccaggtgctt gatccggcga cggaggccag gatggcgctg gccggcggat
      601 cggcctgggc gctcggaaag cggctggccg aggcccccga tcttcgcccc acctttctga
      661 aagtgatcca cgcggcgcgc agcgcctcgc ggaacctgag cgtcgcggcc tttccggcgg
      721 tggcccatgc ggcgctggcg gggcgtccgg ccagcaacaa cttcgcgcgt cggctgcggc
      781 tgacgatcgc cgtggcgcgc gggaagatct gagcggcgct acgcggtcgc caacgccgga
      841 ggaccgctgc taccgcatcg tccgtatcag cgaggcggac agcgtggcgc cggcaagggt
      901 gagcaaggtc gacaggatcg cgaatggcag ccacaggaga ctggcgttgg ccgggtcgag
      961 cccggctctt ggcatgccgt ggtcggcgat gccgaagcca gcgacgacgg ccagcgcggt
     1021 caggatcgta caggcgcccc ccgccgccag ggccacgcgc cgcctggtcc cggcctgacg
     1081 ctctaggcgc gcggccaggt cgcggctgac gtcgatcccg gccatctccg ccggctcagc
     1141 cagatggcga atgagctcgg cttcgaactt cgtggtcatc gtcttgcgcc tccaggatca
     1201 gccgcaacgt ggcgaggccg cgggtaatgt gcgatttgac cgtgcccagg ggaagcctga
     1261 gcgcggcggc gatttcgccg tggctcatgc cctcgccata ggcgagcacg atgcagctgc
     1321 ggggcgcgat cgccaggcgc gccagtgcgc ggtcgatcgc caggccgcgc agcagggccg
     1381 gctccggcga gggctgggcg gcctgggcga tctcgtcgtg aaacgtcacc gcagcgatgg
     1441 agccgcgacg catggcgtcg gtcagcaggt tgagcgcgat gcgtctcagc caggtgcgaa
     1501 aggcgtcggg gtcgcgcaac gatcccagcc ttcgccaggc cttgaagaac gccatctggg
     1561 tcaggtcctc ggccaatgcg gcgtcgccgc aggcgcggcg caacaggccg ccgatatagc
     1621 cctgatggtc gcggaccagc ctcgtgaacg ccgcgatgtc gccgctggcc gcgagcagga
     1681 ctcgggttcg ctccggatcg gcggggagca cgttcgccgc acctagggcc gggcgcgggt
     1741 ccgtcgcacc cagcgcccgc agtagatgag gccggctccc agcgccgtgg aaaacgccgc
     1801 cagtgcgaac agcggcgcgg gtcgcgcgcc cgtcaggacg atcagcgcga accccccggc
     1861 gaccaggccg ccgctggcga acaggaccag catccccagc accatgaggc gctcggccga
     1921 actcagcccg gcgggctggc gtaggtcggc aatcgagttg gcgtcagtca gcaggccttt
     1981 ttcgatcgcc agcccgccgg gctgagttcg gccgagcgcc tcatgg
//
LOCUS       DATAJL010000189         1805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_15958,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000189 DATAJL010000000
VERSION     DATAJL010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1805
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15958"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1186
                     /locus_tag="VHN39_03585"
     CDS             <1..1186
                     /locus_tag="VHN39_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEX2815449.1"
                     /translation="KEAADGVGMTSRQRLYQVELPLAAPVIMAGIRTATVWTIGAATL
                     STPIGQTSLGNYIFSGLQTENWVFVLFGCAASAVLALAADQLLGLIEAGTRLRSARLV
                     LVGAAGLLIGVSLAVAPLLGLGKAGSYVVGAKNFSEQYILAELMAGRLEKAGAQVSRK
                     EDLGSAVAYRALAAGELDVYVDYSGTLWTNILNRKDNPGRAEVLKQLTAELKRRDGVV
                     VLGSLGFENAYAFVMRPDRARALGVASIADLAHAAPKLILGSDLEFLSRPEWQAVESA
                     YDLNFKTKRSYQPTFMYRALEGGEADVISAFSSDGRIAADKLVILTDPKGAIPPYDAV
                     VLISPKRAGDKLLLGALNPLIGKIGVAAMQGANYSVDRDQQKASPAEAAKALERQILP
                     SP"
     gene            1265..1528
                     /gene="fliQ"
                     /locus_tag="VHN39_03590"
     CDS             1265..1528
                     /gene="fliQ"
                     /locus_tag="VHN39_03590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018113289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEX2815450.1"
                     /translation="MNSAEVLDVGRDAIWLTLQLCAPVLIVGLVVGVGIGLLQALTQI
                     QEATLVFAPKIVAIFVSLLLFLPLMGALLSGFMHHIAARIASL"
     gene            1551..>1805
                     /locus_tag="VHN39_03595"
     CDS             1551..>1805
                     /locus_tag="VHN39_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HEX2815451.1"
                     /translation="MEHYATAQQVFAGGLVFARLASILMLIPGIGETFVPVRIRLSLA
                     LLLALMLFPIVGATVPPIPANVSGVGGAVIKETLIGLMIGT"
BASE COUNT          276 a          613 c          596 g          320 t
ORIGIN      
        1 caaggaggcg gcggacgggg tcggcatgac ctcgcgccag cggctctacc aggtggaact
       61 gcccctggcc gcgccggtga tcatggccgg gatccgcacc gccacggtct ggaccatcgg
      121 ggctgcgacc ctttccaccc cgatcggcca gaccagcctc ggcaactaca tcttctccgg
      181 cctccagacc gagaactggg tcttcgtgct gttcggctgc gcggcctcgg cggtgctggc
      241 tctggccgcc gaccagcttc tgggcctgat cgaggccggg acgcggctgc gcagcgcgcg
      301 ccttgtgctg gtgggtgcgg cgggcctctt gatcggggtt tccctcgcgg tcgcgccgct
      361 gctgggcctt ggcaaggccg gctcctatgt ggttggggcc aagaacttct ccgagcagta
      421 catcctggcc gaactgatgg ccggacgcct cgaaaaggcc ggcgcccagg tgagccgcaa
      481 ggaggacctg ggctcggcgg tggcctaccg ggcgctcgcg gcgggcgaac ttgacgtcta
      541 tgtcgactat tccggaacgc tctggaccaa catcttgaac cgcaaggaca atcctggccg
      601 cgccgaggtg ctgaagcagc tgaccgccga gctgaaacgg cgcgacggcg tcgtggtgct
      661 gggctccctc ggcttcgaga acgcctacgc cttcgtcatg cgtccggacc gcgccagggc
      721 gctgggcgtg gcctctatcg ccgacctcgc ccacgccgcg ccgaagctga tcctggggtc
      781 ggacctggag ttcctgtcac gcccggaatg gcaggcggtg gagagcgcct acgacctcaa
      841 cttcaagacc aagaggtcct accagcccac tttcatgtac cgggcgctgg aaggcggcga
      901 ggccgacgtg atctcggcct tctcctccga cggccgcatc gccgccgaca agctggtgat
      961 cctcaccgat cccaaggggg ccatcccgcc ctatgacgcc gtcgtgctga tctcgccgaa
     1021 acgggcaggc gacaagctgc tcctgggcgc gctcaatccg ctgatcggca agatcggcgt
     1081 cgcggcgatg cagggcgcca attacagcgt cgaccgcgac cagcagaagg cttcgcccgc
     1141 agaggccgcc aaggcgctgg agcggcagat tctgcccagt ccgtagccat tcattaacca
     1201 tgccggaccg atggtggcga ggttcgcagg agcgcgaatt cgtcaagctt tccaagaggt
     1261 ctatatgaac agcgccgagg ttctggacgt cggccgagac gccatctggc tgaccctgca
     1321 gctctgcgcg ccggtgctga tcgtgggtct cgtggtcggc gtcggaatcg gccttttgca
     1381 ggctctgacc cagatccagg aagcgacgct cgtcttcgct ccgaagatcg tggcgatctt
     1441 cgtctcgctc ctgctcttcc tgccactgat gggcgccctg ttgagcggct tcatgcacca
     1501 catcgccgcc cgcatcgcca gtctctgagg ccagggcagg accggcccag atggaacact
     1561 acgccaccgc ccagcaggtg ttcgcaggcg gcctggtgtt cgccaggctg gcgtccatcc
     1621 tcatgctgat cccgggcatc ggtgaaacct tcgtgcccgt acgcatccgc ctgtcgctgg
     1681 cgcttctgct ggcgctgatg ctgttcccga tcgtcggggc caccgtgccg ccgatcccgg
     1741 ccaatgtctc gggcgtgggg ggcgcggtga tcaaggagac cctgatcggt ctgatgatcg
     1801 gcacc
//
LOCUS       DATAJL010000190         1899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_3145,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000190 DATAJL010000000
VERSION     DATAJL010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3145"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1029)
                     /locus_tag="VHN39_03600"
     CDS             complement(<1..1029)
                     /locus_tag="VHN39_03600"
                     /inference="COORDINATES: protein motif:HMM:NF017885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEX2815452.1"
                     /translation="MAKDRRLYVGPRLRRLRRDLGLTQADMAADLEISASYVALLERN
                     HRPLTADLLVRLATTYNADMAVLAGDGVDEATRLQAVLKDPIFTDIDLPALETADVAT
                     NFPGITEALLRLYTTYQHEQLALADRGAESRADPDGPSAEAADPVDESRAFLAARRNC
                     FPTLDDAAERLARAVEEHESLAGYLKARHNLCTRRLPPERMVGSIRRLDRHGKQVLLS
                     DGLDAASQKFQLALQVAYLEMGAEIAEVLASASFATDSGERLTRRALASYAAAALLMP
                     YSAFARAVEARRYDVEALARQFGASFEQTAHRLTTLQKPGHERVPFFFIRVDPAGNVS
                     KRLDGAGFR"
     gene            1161..>1899
                     /locus_tag="VHN39_03605"
     CDS             1161..>1899
                     /locus_tag="VHN39_03605"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004451 - isocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HEX2815453.1"
                     /translation="MAYQDHIIEMGQLIKSKGGTWDGISAEAVARMRVQNRFKTGLEI
                     ARYTADIMRTDMAAYDADPANYTQSLGCWHGFVAQQKMISIKKHFGTTKGKYIYLSGW
                     MVAALRSDFGPLPDQSMHEKTSVPALIEEIYTFLKQADARELSLIFRDLDAARAAGDK
                     AKEQKLLDAVDSFETHVVPIIADIDAGFGNAEATYLLAKKMIEAGACALQIENQVSDE
                     KQCGHQDGKVTVPHEDFLAKVRACRYAF"
BASE COUNT          335 a          642 c          631 g          291 t
ORIGIN      
        1 gcggaagccc gccccatcca gccgcttgga gacattgccg gccggatcga cgcggatgaa
       61 gaagaacggc acccgctcgt ggcccggctt ctgcagcgtg gtgagccggt gcgcggtctg
      121 ctcgaagctg gccccgaact ggcgggccag cgcctccaca tcgtagcgtc gcgcttccac
      181 ggcccgggca aaggcggaat agggcatgag cagcgccgcg gccgcatagc tggccagcgc
      241 ccggcgggtg agccgctcac cgctgtcggt ggcgaaggac gctgaggcca ggacctcggc
      301 gatctcggcg cccatctcca gataggcgac ctgcagagcg agctggaact tctggctggc
      361 cgcgtccagc ccgtcggaca acaggacctg cttgccgtgc cggtcgagcc gccggatcga
      421 accgaccatc cgctcgggcg gcagccggcg ggtgcacagg ttgtgccgcg ccttcagata
      481 gccggcgagg ctctcgtgct cctccacagc gcgcgccagg cgctctgcgg cgtcgtcaag
      541 ggtcgggaag cagttgcgtc gcgccgccag gaacgcccgc gactcgtcca ccgggtcggc
      601 ggcctccgcg ctcgggccgt cgggatccgc gcgcgactcg gcgccccggt cggcaagggc
      661 cagctgctca tgctgatagg tcgtgtagag gcgcaagagc gcctcggtga tgcccgggaa
      721 gttggtcgcg acatccgccg tctccagcgc cggcaggtcg atgtcggtga agatcgggtc
      781 cttcaggacc gcctgcagtc ttgtggcctc gtcgacgcca tcgccggcca ggaccgccat
      841 gtcggcgttg taggtggtcg ccagccgcac cagcaggtcg gcggtcagcg gccgatggtt
      901 gcgctccagc agcgccacgt aggaggcgga aatttccaga tcggcggcca tgtcggcctg
      961 ggtcaggccg aggtcgcggc gcagccgcct caggcgggga ccaacataca ggcggcggtc
     1021 tttggccatc ttcctcggcg ctcgtgagtc cgatccttac aacattacaa cgaatttctg
     1081 taaagtttgc gctgcacaat gtaggcacac gctcacggtt ccgggtgcgt tcgaggcccc
     1141 gacactcgcg gaagaggcag atggcatacc aggatcacat catcgagatg ggccagctca
     1201 tcaagagcaa gggcggcacg tgggacggga tcagcgccga ggccgtggcc cggatgcgcg
     1261 tccagaaccg cttcaagacc ggcctggaga tcgcccgcta caccgccgac atcatgcgta
     1321 cggacatggc tgcctacgac gccgatccgg ccaactacac ccagtcgctg gggtgctggc
     1381 acggcttcgt ggcccagcag aagatgatct ccatcaagaa gcacttcggc acgaccaagg
     1441 ggaagtacat ctacctctcc ggctggatgg tcgccgcgct ccgctccgac ttcggtccgc
     1501 tgccggacca gtcgatgcat gagaagacct ctgtgccggc cttgatcgaa gagatctaca
     1561 ccttcctgaa gcaggccgac gcccgcgagc tcagcctgat cttccgcgac ctcgacgccg
     1621 cgcgcgccgc tggcgataag gccaaggagc agaagctgct ggacgccgtc gacagcttcg
     1681 aaacccacgt cgtgccgatc atcgccgaca tcgacgcggg cttcggcaac gccgaggcca
     1741 cctatcttct ggccaagaag atgatcgaag ccggcgcatg cgcgctgcag atcgaaaacc
     1801 aggtctccga cgaaaagcag tgcgggcacc aggacggcaa ggtcaccgtg ccgcatgagg
     1861 actttctcgc caaggtgcgc gcctgccgct acgccttcc
//
LOCUS       DATAJL010000191         4298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28746,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000191 DATAJL010000000
VERSION     DATAJL010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28746"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..958)
                     /locus_tag="VHN39_03610"
     CDS             complement(<1..958)
                     /locus_tag="VHN39_03610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucoamylase family protein"
                     /protein_id="HEX2815454.1"
                     /translation="MDRRFFLRGSAAATAAASWATSATAASQVDPFLDDLQARTFRFF
                     WETTNPANGLTPDRYPDPPFCSIAAVGFALTAYPIGVERGWVSRRAARRRVLTTLRFF
                     NEAPQGPAATGVTGYNGFFYHFLDMALGARFETVELSTVDTALLVAGMLFCQSYFDDP
                     APEEAEIRRLAEAIYSRIDWVWAQQPAEQSPAISMGWKPEADTPPPAEPRPALNPDAQ
                     PEEDSPPPAGESPAVSLSGMPEGGFLPYSWRGYNEAMIVYLLALGSPTHPVAPDAWAA
                     WQRDFDTTWGLNGGPLPHLGFGPMFGHQYPHVWIDLRGIRDDY"
     gene            complement(1044..3995)
                     /locus_tag="VHN39_03615"
     CDS             complement(1044..3995)
                     /locus_tag="VHN39_03615"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815455.1"
                     /translation="MKSISTDARRGRLLASCAAFALGLGLTGAAHAQLSTATVNGRVS
                     ENAAVQAGAKVVATQAGTGFVTRATSDQTGAYVLPGLRPGRYQITATAPDGRSVSETL
                     DVQVGQSATLDLAVAPPAAAVSELVVTGAPTHARETKTSEVATNITIQQIDNLPQADR
                     NFLNFAQLAPGIRLSTNPLRKTFSGGANGSPNGDSLASSQTNVFIDGVSLKSNVQQGG
                     LVGQDSSRGNPFSQLAVQEFRVSTQNFKAEYEDAGTSVITAVTKSGSNEFHGELFGTF
                     ENQNMMATDAITKRNGLSKPPVREEQYGVSLGGPIIQDKLFFFGSYEANDQVRSGQVV
                     AQGDAARQAQLPFPVSQFTGTFASPFHEDLFFGKLTWRVSDDNTLEVSANYRKEHEIT
                     GFGNQGGGSNVGFEQAQNNRNTVFTLQAKDTWQGSNWLNELTADLLTSEFNPSIANPN
                     LPGRNFFGVIEVGGFSTDQDVRERDITLRDNLTFTGFDWHGAHVVKVGAKVSIDQFKV
                     ENGQNTNPQFNFDINPALNESFAQPFEAIFGTGVPHMNANDTQFGMFIQDDWKPTAQL
                     TVNLGLRWDYESNANDENFVTPPDAVAALRGLEATLSTQPGNFFHANDYISTGSNRKA
                     YLGEFQPRIGVSYDLFNDQRTVLFAGYGRYYDRTLFRNAAEENLFRQFTLRSFEFSPD
                     GLPRNGQPTIQFQPQFLTAAGLNALIASNQAPNGELRVLRNDQKPPFTDQFSVGVRQR
                     VGDWNTSATLSEELGRDDIGYFPANRTVARNAGGFLDFIPVPGFGNVVASSNARQTKY
                     TALYLYAEKPYTEESRWGATLAYTYAHSKQKGYTFNFDFPNIATDPFYPNDADVRHQF
                     VGTGTVGLPWGIRASTVVTLTSGAPYSVTDASRGFGDTGNGNMLRIGDFAHAGMFQQV
                     DLSFAKDIQVISGQKIELDANIFNVFNHSNLGCNDGFKPPLPDTNANFGNPGCTVGPP
                     LTVQVGAKYKF"
     gene            complement(3992..>4298)
                     /locus_tag="VHN39_03620"
     CDS             complement(3992..>4298)
                     /locus_tag="VHN39_03620"
                     /inference="COORDINATES: protein motif:HMM:NF024770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX2815456.1"
                     /translation="AIGCLMALNERGVRVPQEMAVAGFDDIPVARLIRPALTTVRINI
                     AELSRRAFKRLVAVIDGDNSENVPETVHPLLVVRESSVSQTAAAKTALEKRNGKRSR"
BASE COUNT          658 a         1308 c         1562 g          770 t
ORIGIN      
        1 tgtagtcatc gcggatgccg cgcaggtcga tccagacatg cggatactgg tggccgaaca
       61 tcggtccaaa gcccaggtgc ggcagcggcc cgccattgag gccccaggtc gtgtcgaagt
      121 cccgctgcca ggcggcccag gcgtccggcg cgaccgggtg ggtcggcgag ccgagcgcca
      181 gcaggtagac aatcatggcc tcattgtagc cgcgccagct gtagggcagg aatccgccct
      241 ccggcatccc gctcaggctg acggcggggc tctccccggc tggcggcggc gagtcttcct
      301 ccggctgcgc gtccgggttg agggcaggcc tcggctcggc cggcggcggc gtgtccgcct
      361 cgggcttcca gcccatgctg atggcgggac tctgctcggc cggttgctgc gcccagaccc
      421 agtcgatgcg cgaatagatg gcctcggcga ggcgccgaat ctcggcctcc tccggggccg
      481 ggtcgtcgaa gtacgactgg cagaacagca tgcccgccac cagcagggca gtgtcgaccg
      541 tcgagagctc gacggtctcg aaccgcgcgc cgagggccat gtcgaggaaa tgatagaaga
      601 agccgttgta tcccgtgacc ccggtcgccg ccggaccctg gggggcctcg ttgaagaacc
      661 ggagcgtggt cagcacgcgc cgccgcgccg cgcgccggct gacccatcct cgctcgacgc
      721 cgatcggata ggcggtgagt gcgaagccga cggcggcgat gctgcagaac ggcgggtcgg
      781 gatagcggtc cggcgtcagg ccgttggccg gattggtggt ctcccagaag aaccggaagg
      841 tccgcgcctg caggtcgtcg aggaaggggt cgacctggga cgccgccgtc gccgaggtcg
      901 cccacgatgc cgccgctgtg gctgcggcgg aacctcgaag gaagaaacgt ctgtccatcg
      961 gcgcgctata ggctccggaa agcgtcggag gagaaggcgg gaaccgcccg gatcgaccgg
     1021 acggttccct ttttcgcggc cgtctagaac ttgtacttgg cgcccacctg caccgtcagc
     1081 ggcggcccaa ccgtgcaacc cggattgccg aagttggcgt tggtatcggg cagcggcggc
     1141 ttgaagccgt cgttgcagcc gaggttggag tggttgaaga cgttgaagat gttggcgtcg
     1201 agttcgatct tctggccgct gatcacctgg atatccttgg cgaagctcag gtccacctgc
     1261 tggaacatac cggcgtgggc gaagtcgccg atgcgcagca tgttgccgtt gcccgtgtca
     1321 ccgaacccgc ggctggcgtc ggttaccgag tacggcgcgc cggaggtcag ggtaacgacg
     1381 gtggaggccc tgatgcccca cggcaggccc acggtcccgg tgcccacgaa ctggtgccgc
     1441 acgtccgcat cgttcggata gaacgggtcg gtggcgatgt tcgggaagtc gaagttgaag
     1501 gtgtaaccct tctgcttcga gtgggcgtag gtgtaggcca gcgtcgcccc ccagcgcgac
     1561 tcctcggtgt agggcttctc ggcatacaga tagagagcgg tgtacttcgt ctggcgcgcg
     1621 ttgctggagg ccacgacgtt gccgaagccg ggcaccggga tgaagtccag gaacccaccg
     1681 gcgttgcggg ccaccgtgcg gttggccggg aaatagccga tatcgtcgcg gcccagttcc
     1741 tcgctgagcg tcgccgaggt gttccagtcg ccgacccgtt ggcgcacgcc gacgctgaac
     1801 tggtcggtga agggcggctt ctggtcgttg cggaggacgc ggagctctcc gttcggagcc
     1861 tggttcgagg cgatcagcgc attcaggccc gccgcggtca ggaactgagg ctggaactgg
     1921 atggtgggct ggccattgcg cggcaggccg tctggggaga actcgaagct gcgcagggtg
     1981 aactggcgga ataggttctc ttcggcggcg ttgcggaaca gggtgcggtc gtaatagcgg
     2041 ccgtagcccg cgaacagcac ggtgcgctgg tcattgaaca ggtcgtagga gacgccgatc
     2101 cgcggttgga attcgccgag gtaggccttc cggttcgagc ccgtcgagat gtagtcgttg
     2161 gcgtggaaga agttgcccgg ctgggtcgac agggtcgcct ccagcccccg caaggccgcc
     2221 accgcatcgg gcggcgtcac gaaattctcg tcgttggcgt tactctcgta gtcccacctc
     2281 agacccaggt tgacggtcag ctgggcggtt ggcttccagt cgtcctggat gaacatgccg
     2341 aactgggtgt cgttggcgtt catgtgcggc acgccggtgc cgaagatggc ctcgaacggc
     2401 tgggcgaagc tctcgttcag cgctgggttg atgtcgaagt tgaactgcgg attggtgttc
     2461 tggccattct cgaccttgaa ctggtcgatc gacaccttcg cgccgacctt gacgacgtgc
     2521 gcgccgtgcc aatcgaagcc ggtgaaggtg aggttgtcgc gcaaggtgat gtcccgctcg
     2581 cgaacgtcct ggtcggtgga gaagcctccc acctcgatca cgccgaagaa gttgcgcccc
     2641 ggcaggttcg ggttggcgat cgagggattg aattccgagg tcaggaggtc ggcggtgagt
     2701 tcattcagcc agttcgaccc ctgccaggtg tccttagcct gcagggtgaa caccgtgttg
     2761 cggttgttct gcgcctgctc gaagccgacg ttggaaccgc cgccctggtt cccgaagccg
     2821 gtgatctcgt gctccttgcg gtaattggcc gagacctcca gcgtgttgtc gtcactcacc
     2881 cgccaggtca gcttcccgaa gaagagatcc tcgtggaagg ggctggcgaa ggtgccggtg
     2941 aactggctga cgggaaacgg cagctgcgcc tggcgcgccg cgtcgccctg ggccacgacc
     3001 tggccggagc gaacctggtc gttggcttcg tacgagccga agaagaacag cttgtcctgg
     3061 atgatcgggc cgccgagcga gacgccatac tgctcctcgc gcaccggcgg cttcgacagg
     3121 ccgttgcgct tggtgatggc gtcggtggcc atcatgttct ggttctcgaa ggtgccgaag
     3181 agttcgccgt ggaattcgtt ggaccctgac ttggtcacgg ctgtgatcac agaggtgccg
     3241 gcgtcttcgt actcggcctt gaagttctgc gtcgagacgc ggaattcctg cactgccagc
     3301 tggctgaacg ggttgccccg gctggagtcc tggccgacca ggccgccctg ctggacgttg
     3361 ctcttcaggc tgacgccgtc gatgaacaca ttggtctggc tggaggcgag ggagtcgccg
     3421 ttgggcgagc cgttggcgcc gccggagaag gtcttgcgca gcggattggt cgacagccgg
     3481 atgcccggcg ccagttgcgc gaaattgagg aagttgcggt cggcttgcgg caggttgtcg
     3541 atctgctgga tggtgatgtt ggtggcgacc tcggaggtct tggtctcgcg ggcatgagtc
     3601 ggggcgccgg tgaccaccag ctccgagacg gcggcggcgg gcggggcgac cgcgaggtcg
     3661 agggtcgccg actggccgac ctggacgtcg agcgtctcgc tgacggagcg cccgtcgggc
     3721 gcggtggcgg tgatctggta gcgtccgggg cgaaggccgg ggagcacata ggcgccggtc
     3781 tggtcggagg tcgcgcgggt gacgaagccg gtgccggcct gcgtggcgac caccttcgcg
     3841 cccgcctgga ccgcggcgtt ctcgctgacg cggccattga cggtcgcggt gctgagctgc
     3901 gcgtgcgccg cccccgtgag gcccaatcca agggcgaagg cggcgcagga cgccaatagc
     3961 cggccacgac gcgcgtcggt gctgatgctc ttcatctgga tctcttccca ttcctttttt
     4021 cgagcgcggt cttcgccgcg gccgtctgcg acaccgagga ctcgcgcacc accaggaggg
     4081 gatgcacggt ctccggaacg ttctctgagt tgtccccgtc gatcaccgcc accaggcgct
     4141 tgaaggcgcg gcggctgagc tcggcgatgt tgatccgcac cgtggtcagg gcgggccgga
     4201 tgagccgggc gacggggatg tcgtcgaagc cggcgacggc catctcctgg gggacgcgga
     4261 cgccccgctc gttgagcgcc atcaagcagc cgatggcc
//
LOCUS       DATAJL010000192         3747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41904,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000192 DATAJL010000000
VERSION     DATAJL010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41904"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1108
                     /locus_tag="VHN39_03625"
     CDS             <1..1108
                     /locus_tag="VHN39_03625"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2815457.1"
                     /translation="AWGASGRNGGFVSPGYSARYESIERQVGADHAKALHRLSIEGAS
                     AVAANLEALGVADADRVDGILSTSRYEAADELKTRRDWLEREFDYRLEFRTRDEVQAD
                     LVSPRYFQGLYNPQGFHLNPLNYARALAREVERLGGAVYEASPARALSRESGAGVVVT
                     DAGHVRARDVVIACGGYTGELAPRLRRSYLPIATYVMLTRPDKALIGGAIHTRAAVGD
                     GRRAGDYYRLVDGGTRILWGGKITTRTSEPRRLGALLRQTMAATFPQLAELEVDIAWS
                     GLMAYARHLMPQIGRLEEGVWYCTAFGGHGLNTTAIGGGLIAEAIAGDSDRYQLFAPF
                     GLAWNGGLAGRGAVQGAYWAMQAGDRLRERRWAS"
     gene            1148..2170
                     /locus_tag="VHN39_03630"
     CDS             1148..2170
                     /locus_tag="VHN39_03630"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEX2815458.1"
                     /translation="MPEIALDRARARPAAATHFADNVDYPPLLGRPIVFLPGLALLFE
                     ALRWWGFGSTAIGRGLSDLLGLSGLSPAADNIAVAALATLVVGLNLGVVMRLKLRWQV
                     YVVWLELALLILVFFHSFNLSFEFIRRKIGFLLTQGLTMTLYISVVSIAIASVLALLG
                     AMAKLSSNGIAIGIANFYTSLFRGIPLLMQIYLIYMGLPQLGYVVNAVPAGIAALSLC
                     YGAYMTEIFRAGIESIPKGQWEAARALGLKPTATLTRIILPQAMRVIIPPTGNQFIAM
                     LKDSSLVSVVGVWELMYLARTQGQTEFRHIEMMITASMIYWLFSIVLELIQARIERHY
                     GRAHAR"
     gene            2160..2927
                     /locus_tag="VHN39_03635"
     CDS             2160..2927
                     /locus_tag="VHN39_03635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEX2815459.1"
                     /translation="MRAKASPEADAPAVDIRGLSKWFGAFKALDGLDLSVARGERLVI
                     CGPSGSGKSTLIRTINALEGFEEGEIRVEGIRLTREPAAVEAIRLRVGMVFQGFNLFP
                     HLTVLENCALPLRLVRGLPAAEARERALHYLSKVRIPEQADKFAAQLSGGQQQRVAIA
                     RALAMEPGIMLFDEPTSALDPEMVKEVLDTMVQLAAEGMTMMVVTHEMGFARQVADRV
                     IFMDRGKIVEQAPPEDFFSHPREERTRAFLQQILRLH"
     gene            complement(3135..3425)
                     /locus_tag="VHN39_03640"
     CDS             complement(3135..3425)
                     /locus_tag="VHN39_03640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815460.1"
                     /translation="MQIKNPRLQLFAAVTLAATLLMSASPSAAAGGPGGGGGGGGGGG
                     ATTVNPGTGQIVPVKGGHVNCVPVPPGTVCTGVLACIIVNTPAGLVQCTARI"
BASE COUNT          553 a         1258 c         1316 g          620 t
ORIGIN      
        1 cgcctggggc gcgtcggggc ggaacggcgg cttcgtcagt cccggctatt ccgcgcgtta
       61 cgagagcatc gaacgccagg tgggggcgga ccacgccaag gccctgcatc ggctgtcgat
      121 cgagggggcg agcgcggtcg cggcgaacct ggaagccctg ggcgtcgccg atgcggaccg
      181 ggtggacggg atcctgtcga cctcgcgcta cgaggctgcc gacgagctca agacccgccg
      241 cgactggctg gaacgcgagt tcgattatcg tctggaattc cgcacccgcg acgaggtgca
      301 ggccgacctg gtgtcgccgc gctacttcca ggggctctac aatccgcaag gctttcatct
      361 caatccgctg aactacgcca gggcgctcgc ccgcgaggtc gagcggctgg gcggggcggt
      421 ctatgaggcc tcgccggcgc gggcgctttc gcgggagagc ggggccggcg tggtggtcac
      481 ggacgcaggc catgtgcggg ccagggacgt ggtgatcgcc tgcggtggct atacgggcga
      541 gctcgcgccc cggctgcggc gcagctacct gccgatcgcc acctatgtga tgctgaccag
      601 gcccgacaag gcgctgatcg gcggcgcgat ccacacccgc gccgcggtcg gcgacgggcg
      661 gcgcgccggg gactactatc gcctggtgga tggggggacg cgcatcctgt ggggcggcaa
      721 gatcaccacg cggacatccg agccgcggcg gctgggcgcg ctgcttcgcc agaccatggc
      781 agccaccttt ccgcagctgg ccgagcttga ggtcgacatc gcctggtcgg gcctgatggc
      841 ctatgcgcgc cacctgatgc cgcagatcgg ccggctcgaa gagggcgtct ggtactgcac
      901 cgcgttcggc ggccacgggc tcaacaccac cgccatcggc ggcgggctga tcgccgaggc
      961 gatcgcgggc gacagcgacc gctatcagct gttcgcgccg ttcggcctgg cctggaacgg
     1021 cggcctggcc ggacgtggcg ccgtgcaggg cgcctactgg gcgatgcagg cgggcgaccg
     1081 gctgcgcgaa cgccgatggg cctcgtgagg tccccgcgca cgcgcaccac caggacgggg
     1141 gccgatcttg cctgagatcg ccctcgaccg agcccgcgcg cgcccggcgg cggcgacgca
     1201 cttcgccgac aacgtcgatt atccgccgct gctcggccgg ccgatcgttt tcctgccggg
     1261 cctggccctg ctgttcgagg cgctcagatg gtgggggttc gggtcaacgg cgatcgggcg
     1321 gggcctgagc gacctgcttg ggctttcggg tctgtcgccg gcggcggaca acatcgcggt
     1381 ggccgcgttg gcgacgctgg tggtcggcct caacctgggc gtggtcatgc gcctgaagct
     1441 gcgctggcag gtctatgtgg tgtggctcga actggccctg ctgatcctgg tgttcttcca
     1501 ctcgttcaac ctgagtttcg agttcatccg gcggaagatc gggttcctgc tgacccaggg
     1561 cctgacgatg accctctaca tttcggtggt ctcgatcgcc atcgcctcgg tgctggccct
     1621 gctcggcgcc atggccaagc tgtcgtcgaa cggcatcgcg atcggcatcg ccaatttcta
     1681 cacctcgctg ttccggggca ttccgctgct gatgcagatc tacctgatct acatgggcct
     1741 gccgcagctg ggctatgtgg tgaacgccgt cccggccgga atcgcggcgc tctcgctctg
     1801 ctacggcgcc tatatgacgg agatcttccg ggccggcatc gagagcattc ccaagggcca
     1861 gtgggaggcc gcgcgcgcgc ttggcctcaa gcccaccgcg acgctcacgc ggatcatcct
     1921 gccccaggcc atgcgggtga tcattccgcc gaccggcaac cagttcatcg ccatgctcaa
     1981 ggacagctcc ctggtctccg tggtcggggt ctgggagctg atgtacctgg cgcgcacgca
     2041 aggccagacc gagttccggc acatcgagat gatgatcacc gcctcgatga tctactggct
     2101 gttctccatt gtgctcgagc tcatccaggc gcgcatcgaa cgccactacg gccgggcgca
     2161 tgcgcgctaa ggcctccccc gaggcggacg cgccggcggt ggatatccgg ggcctgagca
     2221 aatggttcgg cgccttcaag gcgctcgatg gcctggacct gagcgtcgcg cgcggcgagc
     2281 ggctggtgat ctgcggcccg tccggttcgg gcaagtcgac gctgatccgc acgatcaacg
     2341 ccctcgaagg ctttgaggag ggcgagatcc gggtcgaggg gatccggctg acccgcgagc
     2401 ccgccgccgt cgaggcgatc cggctgcggg tgggcatggt gttccagggg ttcaacctct
     2461 tcccgcacct gacggtgctg gagaactgcg ctctgccgct gcgcctggtg cgcggcctgc
     2521 ccgccgccga ggcgcgcgag cgcgccctgc actacctgtc gaaggtgcgc attccggaac
     2581 aggcggacaa gttcgccgcc cagctgtccg gcgggcagca gcagcgcgtg gcgattgcgc
     2641 gcgcgctggc catggagccg ggcatcatgc tgttcgacga gccgacctcg gcgttggacc
     2701 cggagatggt caaggaagtg ctcgacacca tggtccagct cgcggccgag gggatgacga
     2761 tgatggtcgt cacccacgaa atgggcttcg cacgtcaggt cgccgatcgg gtgatcttca
     2821 tggaccgcgg aaaaatcgtc gagcaggcgc cgccggagga cttcttctcg cacccgcgcg
     2881 aagagcggac gcgggcgttc ctgcagcaga tcctgcggct gcactgacct cgcggttaaa
     2941 gcagatgcag cgccgcgccg atcccgccaa atcccgcgat catcatgagc cacgcggagg
     3001 cttcgggcgc tgcgccgctc ggatggcgtg cgtggccgtg gcgtcgccat ggagtatctg
     3061 gcccataggt cctcccggaa tgaaggatca gcttgacgga ttcccccaca ctccgggacc
     3121 agacacctag gccgctagat gcgcgcggtg cactgaacaa ggcccgcggg cgtgttcacg
     3181 atgatgcagg cgaggacgcc ggtgcagacc gttcctggcg gcacgggcac gcagttgacg
     3241 tggccgccct tcaccggaac gatctggccg gtgcccggat tgaccgtggt ggctccgccg
     3301 ccgccgccgc cgccaccgcc gccgcctggg ccaccggccg cagcgctcgg cgacgcagac
     3361 atcagaagag tcgccgccag ggtgacggca gcgaacagtt gcagcctggg gttcttgatc
     3421 tgcacgtttc atctcccaaa accgcgtgcg cttggcacgc tcagacggtc ggcggaatgc
     3481 cggccgaatt cgaaaccacc gcgggcgggc gagcatcgtc gtgcgctcgc gaaccttcaa
     3541 atcgacaacg atccggtcct ggagattatt ccccggacct ccggccgatc ggcgccggcc
     3601 ggtcgtgacc tggcctggct taccgcctag gctgcgcggt gttgatctgg gggaaccaca
     3661 tggaccatcg gctggcggcg gcgatcgctt tcgttttcgt gtctgggcag gccttggcgc
     3721 agacaccgcc cgctccgcca gccagca
//
LOCUS       DATAJL010000193         1850 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_3181,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000193 DATAJL010000000
VERSION     DATAJL010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1850
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3181"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VHN39_03645"
     CDS             <1..317
                     /locus_tag="VHN39_03645"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEX2815461.1"
                     /translation="FADVLARLAAVIEARKGGDPSASYTAKLLADPSLAAKKLGEEAV
                     ETVIAATQGDNAAIAAESADLIYHWLVVLAAAGVPLDEVAARLEAREGTSGLDEKASR
                     KP"
     gene            complement(314..841)
                     /locus_tag="VHN39_03650"
     CDS             complement(314..841)
                     /locus_tag="VHN39_03650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Smr/MutS family protein"
                     /protein_id="HEX2815462.1"
                     /translation="MKRPLKPEERHIWGMVAATVHPLPGRGTPKAEPSDAIPPPTMAA
                     AVARIAPPPSTPGAKRPKPRADLDPIEPRRKHSIAKAREPIGARLDLHGLDQDRARGV
                     LERFLARAWDEGFRAVLVITGKGVQGDGILKRRAPEWLAAPHLAHMVAGISDAARHHG
                     GEGALYVALKRKARG"
     gene            complement(838..>1850)
                     /locus_tag="VHN39_03655"
     CDS             complement(838..>1850)
                     /locus_tag="VHN39_03655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MltA domain-containing protein"
                     /protein_id="HEX2815463.1"
                     /translation="LPLSALRGWEAEDHAAALAAFRETCGVARDPAMAQVCRSARAVG
                     PLDRETSERFFEANFRAERIAGDGVLTAYFSPEYPARHRASDEFSAPLRAKPADLRVV
                     DAGTFDPSQSGRQTAARDTGSGPLTPYPDRTTIEAAPPDKALAWMRPEDLFFLQIQGS
                     GVLTFDDGKRQKAVYAANNGWPFLGIANPMRDRGLLARDNTSAETIRAWLADHRGPDA
                     QAIMQLNPRYAFFSLVADDSRQPVGTANVPLAAGRALAVDPAYHPMGDYLWIDASAPM
                     LNGAFPAYRRLATALDTGGAIKGEVRADLYLGVGPAAGLEAGRVRHTLHLYRLVPKVA
                     AP"
BASE COUNT          249 a          636 c          705 g          260 t
ORIGIN      
        1 gttttgcaga cgtcctcgcg cgcctggccg ccgtgatcga ggcccgcaag ggcggcgacc
       61 cgtccgcctc ctacaccgcc aaactgctgg ccgacccgtc gctcgccgcc aagaaattgg
      121 gcgaggaagc cgtcgaaacc gtcatcgccg ccacccaggg cgacaacgcc gccatcgccg
      181 ccgaaagcgc cgacctgatc taccactggc tggtggtgct ggccgccgcc ggagtgccgc
      241 tggacgaggt cgccgcgagg ctggaggccc gcgagggaac ctcgggcctc gacgaaaagg
      301 cttcgcggaa accctagcct cgcgccttgc gcttcagcgc cacatagagc gcgccttcgc
      361 cgccgtggtg gcgggcggcg tcggagatgc cggcgaccat gtgggccagg tgtggggcgg
      421 cgagccattc gggcgcgcgg cgtttcagga ttccatcgcc ctggacgccc ttgccggtga
      481 tcaccaggac ggcgcggaag ccctcgtccc acgcgcgagc caggaaccgc tccagcacgc
      541 cgcgggcccg atcctgatcc aggccgtgca ggtcgagacg ggcgccgatc ggctcgcgcg
      601 ccttggcgat actgtgtttg cggcggggct cgatcgggtc gaggtcggcg cggggtttcg
      661 ggcgtttcgc cccgggcgtg gacggcggcg gagcgatccg ggcgacggcc gcggccatgg
      721 tcggcggcgg aatggcgtcc gacggctcgg ccttgggcgt cccgcggccg ggcagaggat
      781 gcacggtggc cgcgaccatc ccccagatgt gccgctcctc gggcttcagc ggccgtttca
      841 cggcgcggcg accttgggga ccaggcggta gaggtgaagg gtgtggcgca cccggccagc
      901 ttccaggccc gccgccggcc caacgcccag atagaggtcg gcgcggacct cgcccttgat
      961 ggcgccgccg gtgtcgagcg ccgtggcgag gcggcggtag gcggggaagg cgccgttgag
     1021 catcggcgcg ctggcgtcga tccacagata gtcacccatc gggtggtagg ccgggtcgac
     1081 cgctagcgcc cggccggccg ccagcgggac gttggccgtc cccaccggct ggcggctgtc
     1141 gtccgcgacc aggctgaaga aggcgtagcg cgggttgagc tgcatgatcg cttgggcgtc
     1201 cggccctcgg tggtcggcca gccaggcgcg gatcgtctcg gccgaggtgt tgtcgcgggc
     1261 gagcaggccc cgatcgcgca tcggattggc gatgccgagg aacggccagc cgttattggc
     1321 ggcgtaaacc gccttttgcc gcttgccgtc gtcgaaggtg agcacgcccg agccctggat
     1381 ctgcaggaag aacaggtcct ccggccgcat ccaggccagg gccttgtccg gtggggccgc
     1441 ctcgatggtc gtacggtcag ggtagggcgt cagcgggccg gagcccgtgt cgcgcgccgc
     1501 ggtctggcgg ccggactggc tggggtcgaa ggtcccggcg tcgacgaccc tcaggtccgc
     1561 cggcttggcg cgcagggggg cgctgaattc gtcgctcgcc cgatggcgcg cgggatactc
     1621 cggcgagaaa taggcggtga gcacgccgtc gcccgcgatc cgctcggcgc ggaaattggc
     1681 ctcgaagaac cgttcggagg tctcgcggtc cagcggtccg acggcgcgcg cgctgcggca
     1741 gacttgcgcc atcgccggat cgcgggccac gccgcaggtc tcacggaagg cggccagggc
     1801 cgcggcgtga tcttccgcct cccagcccct cagcgccgaa agcggcagaa
//
LOCUS       DATAJL010000194         3095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_15998,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000194 DATAJL010000000
VERSION     DATAJL010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3095
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15998"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..509
                     /locus_tag="VHN39_03660"
     CDS             120..509
                     /locus_tag="VHN39_03660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815464.1"
                     /translation="MTPALTGGFFVLASVITLAAGASLLAPGRGLDWMWAAKPAGHAQ
                     LLAMEPWAGLGFLGFSAVAGATSAGCFQRRRWAWRLAIAVFLVNGLSDAARIPFGAVG
                     EGVLGVVATSLIVWGLTRPRVRALFSL"
     gene            506..970
                     /locus_tag="VHN39_03665"
     CDS             506..970
                     /locus_tag="VHN39_03665"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2815465.1"
                     /translation="MSQPITLRAARREDVAVIVALLADDDLGAGREVVSDPPLPGYLE
                     AFERIAANPRTLLAVAEDTAGAVVGTLELTFIPGLSNQGAELALVSAVRVSSSLRGQG
                     LGETMMAWAMDEARRRGCRDMELLSHLSRVAAQRFYERLGFAKSHAGMRIRL"
     gene            complement(967..1494)
                     /locus_tag="VHN39_03670"
     CDS             complement(967..1494)
                     /locus_tag="VHN39_03670"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX2815466.1"
                     /translation="MLRILMISVAALSLTACQAKKPALADAQDQAQGPVAPDQSKAAK
                     AFLAKNAKEPGVVTLPDGLQYKIVTSGPAAGLKPHIQDEVKVNYEGKLIDGTVFDSSY
                     ERGQPAAMPLKNLVKAWQEAIQLMRPGDVWMLYVPPELGYGAEGQGPIPPGAALIFKI
                     ELIDSLPGPGTVERG"
     gene            complement(1506..2714)
                     /locus_tag="VHN39_03675"
     CDS             complement(1506..2714)
                     /locus_tag="VHN39_03675"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017506423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEX2815467.1"
                     /translation="MTLAFDDILAARDRLQGHIERTPCRHSRTLSEITGADVWVKFEN
                     LQFTAAYKERGALNKLLQLTAAEKKRGVIAASAGNHSQGLAYHAARLGIPVTIVMPRG
                     TPFVKVQQTRAHGAEVVIEGEGYDEASAVAMRLREERDLVFVHPFNDLDVMAGQGTVA
                     LEMLEDEPELEVLPIPIGGAGLIAGMATAAKHAKPSIHIVGLEPAMYPSFTARMRGVN
                     AGAASGGATIAEGIAVKQVGDLSYSVARPLVDEVLLVEEPFFERAIALYCNVEKTVTE
                     GAGAGSLAALLAFPEKFRGKTCGLVITGGNIDTRLLASVLTRELVREQRIVSLRIIGD
                     DRPGLLGTVSAIIGRMGANIIEVAHNRLALDVPAKGAEFDILIETRDAQHTQEIMDAL
                     REAGYPPRAV"
     gene            complement(2801..>3095)
                     /locus_tag="VHN39_03680"
     CDS             complement(2801..>3095)
                     /locus_tag="VHN39_03680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="mannose-1-phosphate guanylyltransferase"
                     /protein_id="HEX2815468.1"
                     /translation="AMVVAADIGWSDVGAYDALWAEGAKDPADNVLQGPAIAADSSGS
                     LVISDGPTVVLAGVEDLAVIVENGVVLVTRRDAPGAVRAAVEAVKKAGREDLL"
BASE COUNT          410 a         1043 c         1133 g          509 t
ORIGIN      
        1 tggatggcct ggtcgcgggc gggctcgtgg gggtgctgct ggccttcatg atcgtcgggg
       61 tcagccggcg cgcggcggcc taggacgggg tgagcgaggc gcctccagcc cgggcgccgg
      121 tgacgcctgc cctcacgggc ggtttcttcg tcctggcgag cgtgatcacg ctggcggccg
      181 gcgccagcct cctggcgccc ggccgcggac tggactggat gtgggcggcc aagcccgccg
      241 gacacgcgca gctcctggcc atggagccgt gggcaggcct ggggttcctg ggattctcgg
      301 cggtcgccgg ggccaccagc gccggctgtt tccagcgccg ccgctgggcc tggcgcctcg
      361 ccatagcggt gttcctcgtc aatggcctta gcgacgcggc gcgcatcccc tttggggccg
      421 tgggtgaagg ggtcctgggc gtggtggcga ccagcctgat cgtctggggg ttgacccgtc
      481 cacgggtccg ggcgctgttt tcgctatgag ccagcccatc accctgcgcg ccgcccgccg
      541 ggaggacgtg gcggtcatcg tggcgctgct ggccgacgac gacctgggcg cggggcggga
      601 ggtcgtctcc gacccgccgc tgcccggtta cctggaggcc ttcgagcgga tcgccgccaa
      661 cccgcgcacc ctgctggcgg tggcggagga tacggccggc gcggtggtgg gcaccctgga
      721 gctgaccttc atcccgggcc tttccaacca gggcgccgag ctggcgctgg tgtcggcggt
      781 gcgggtgagt tcaagcctgc gcggccaggg gctcggcgag accatgatgg cctgggccat
      841 ggatgaggcg cgccggcgcg gctgccgcga catggagctg ctgagccacc tcagccgcgt
      901 cgcggcgcag cggttctacg aacggctcgg cttcgcgaag agccacgccg ggatgcggat
      961 ccggctctag ccgcgctcga ccgtgccggg gcccggcagg ctgtcgatga gctcgatctt
     1021 gaagatcagc gcggcgccgg gcgggatcgg accctggccc tcggcgccgt agcccagctc
     1081 cggcgggacg tagagcatcc agacgtcgcc agggcgcatg agctggatgg cctcctgcca
     1141 ggccttgacc aggttcttca gcggcatggc ggcgggctgg ccgcgttcgt aggaactgtc
     1201 gaagaccgtg ccgtcgatca gcttgccctc gtagttgacc ttcacctcgt cctggatatg
     1261 cggcttcagg ccggcggccg ggccagaggt gacgatcttg tactgcaggc cgtcgggcag
     1321 ggtgacgacg cccggttcct tggcgttctt ggccaggaag gccttggccg ccttggactg
     1381 gtcgggggcg accgggccct gggcctggtc ctgcgcatcc gccagcgcgg gcttcttggc
     1441 ctggcaggcc gttaggctga gggcagccac ggaaatcatc agaatacgga gcatctgcgg
     1501 tcctgttaaa cggcgcgggg cgggtagccc gcctcgcgga gggcgtccat gatttcctgg
     1561 gtgtgctggg cgtcgcgggt ctcgatcaat atgtcgaact ccgcgccctt ggccggcacg
     1621 tccagcgcga gacgattgtg cgccacctcg atgatgttgg cgcccatgcg gccgatgatg
     1681 gcggataccg tgcccagcag gcccggccgg tcgtcaccaa tgatccgcag actgacgatc
     1741 cgttgctcgc ggaccagttc gcgggtcagt acggaggcca gcaggcgcgt gtcgatattg
     1801 ccgccggtga tgacgaggcc gcaggtcttg ccgcggaact tctcggggaa ggccaggagg
     1861 gcggcgagcg agcccgcgcc cgcgccctcg gtcacggttt tctcgacatt gcagtagagc
     1921 gcgatggcgc gctcgaagaa cggctcctcg accagtagca cctcgtccac cagcggccgg
     1981 gccaccgagt agctgaggtc gcccacctgc ttgaccgcga tgccctcggc gatggtcgcc
     2041 ccgcccgagg ccgcgccggc gttgacgccg cgcatgcggg cggtgaacga ggggtacatg
     2101 gccggttcca gccccacgat gtgaatcgag ggcttcgcgt gcttggccgc cgtcgccatg
     2161 ccggcgatca ggccggcgcc gccgatcggg atgggcagca cctccagctc cggctcgtcc
     2221 tccagcatct ccagcgccac cgtgccctgg ccggccatga cgtcgaggtc gttgaacggg
     2281 tggacgaaga ccaagtcacg ctcctcccgg agccgcatgg ccacggcgga ggcctcgtca
     2341 tacccctcgc cctcgatcac cacctcggcg ccgtgggcgc gggtctgctg caccttcacg
     2401 aagggggtgc cgcgcggcat gacgatggtc accgggatgc cgaggcgcgc cgcatgatag
     2461 gccaggccct ggctgtggtt gccggcggag gcggcgatga cgccgcgctt cttctcggcg
     2521 gccgtgagct gcagcagctt gttgagcgcg ccgcgctcct tgtaggccgc cgtgaactgc
     2581 aggttctcga acttcaccca gacgtcggcg ccggtgatct cagagagcgt ccgcgaatgc
     2641 cggcacggcg tgcgctcaat atgaccctgc agccggtctc tggctgcgag gatgtcatcg
     2701 aaggccaatg tcataggaag aacggggtca tggcggcgcc ggggtctttc ggaaaaggcg
     2761 cgcaacctaa cggcggtgcg gtcctgctgc aatgcagcgt ctagaggagg tcttctcttc
     2821 ccgccttctt taccgcctcg acggccgccc gcacggcgcc cggcgcgtcg cggcgggtga
     2881 ccaggacgac gccgttctcg acgatcacgg ccaggtcctc gactccggcc agcaccactg
     2941 tggggccgtc ggagatgacc agggacccgg agctgtctgc ggctatggcc gggccctgca
     3001 gcacattgtc ggccgggtcc ttggcgccct cggcccagag tgcgtcatag gcgcccacgt
     3061 cgctccagcc gatgtcggcg gcgaccacca tggcc
//
LOCUS       DATAJL010000195         5330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41934,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000195 DATAJL010000000
VERSION     DATAJL010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5330
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41934"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1130
                     /locus_tag="VHN39_03685"
     CDS             <1..1130
                     /locus_tag="VHN39_03685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815469.1"
                     /translation="ALSVCATVAETPAGSGYGQALAALAPAYQMKPEMVEAEAPGGLA
                     VIQDETFQSETPPAWLHKPTAHDLLAVWPKSAWAKHLSGKATISCLVGLQGAIYDCAP
                     IWETPPGESFGAAAIALTPQLLMKPGTVNGQPVVTAVNIPFVFMMPPGGGGGHGEPDG
                     GRPTAPAAMAWLQAPSYADMAAAYPKKAREGHLSGHVTVDCSFTNLGFLSDCMTISEE
                     PKGQGFGAAAHNLAGRFKAPAELPLKTRQAANVQLPFSFDAAVLTDATPAIGKPQWAV
                     LPTAQETAAAFEAVIKGGVTGTVRVMLHCTVQPGGGVSGCTVAREDPAGQGVGEAALS
                     LIPHFKITTWTIEGLPTVGGTINIPLRYEGPGKEPAPAAKP"
     gene            complement(1137..1715)
                     /locus_tag="VHN39_03690"
     CDS             complement(1137..1715)
                     /locus_tag="VHN39_03690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018080243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005267 - potassium channel activity
                     [Evidence IEA];
                     GO_function: GO:0015252 - proton channel activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEX2815470.1"
                     /translation="MGKERLTAFTDGVVAIIITIMVLELKLPSGVAAADLLAVVPRLL
                     IYLLSFVYVAIYWNNHHHMMHLANSVNGAILWANMHLLFWLSLTPFATAWIGESHLAA
                     LPVALYGGMMLMTAIAYTILMTVLVTNEGPDSALAQAMGRDIKGKLSLAIYAAGAGLA
                     FVQPWASIGCYALVSLIWFIPDRRVERTLQTP"
     gene            complement(1725..2933)
                     /locus_tag="VHN39_03695"
     CDS             complement(1725..2933)
                     /locus_tag="VHN39_03695"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2815471.1"
                     /translation="MTYAPEGRPCYDADSHIMELPTFLKAYADPALRDEIPEVSYSAS
                     IVTDEEVAVLMAQGGRHSAEHVAAQIALGDKLIESSKEIQALGAFNSADRTKALDLLG
                     FKKQLVFATHSVVMPFSASSKLEPRLRYGAARAHNRHMADFCKSDDRLMGVAVVPLDD
                     PDLAMAELDFALESGLKAAWIPHRPCGERSPGHLDLDPFWARLAESGAPFVLHVGGAP
                     LQLARAWMNNGRAPTKDWLGGGENLRTKDIALLHEGPEQFLTMMVLDGVFERHPTLRG
                     ASVELGAGWVPELLRRLDWVVKHWSRNDANLQAWKRTPSEQITQQLAFTPFVFEAVGD
                     LIDQSNEDLYLFSTDYPHIEGGRNPIGRFETALGDRSEAVREKFYAENFLRIFPGARV
                     GAAPRQAVTA"
     gene            complement(2969..4459)
                     /gene="tcuA"
                     /locus_tag="VHN39_03700"
     CDS             complement(2969..4459)
                     /gene="tcuA"
                     /locus_tag="VHN39_03700"
                     /inference="COORDINATES: protein motif:HMM:NF006130.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent tricarballylate dehydrogenase
                     TcuA"
                     /protein_id="HEX2815472.1"
                     /translation="MADVVVVGAGNAAFAAAVSAAEQGARVSVLERSPRALAGGNTAF
                     TAGAMRFAYDGVDDLRRLMPDLTDAEVAATDFGAYPESQFFEDMGRVTEYRTDPELCE
                     LLVTRSRETMFWMRDQGVRFAPIWGRQAFKVDGRFRFWGGLTVEAWAGGPGLVEAWTQ
                     IAERAGIEVLYGARAVSLIADDGGVHGVRVKQYGVTRDVPARAVVLAAGGFQANTEWR
                     TRYLGPGWDLAKVRGSRFNTGDGLRMALDIGAMPTGQWSGSHAVQWERNAPEFGDLAV
                     GDGFQKHSYPFGILLNAKGKRFLDEGADFRNYTYAKYGREVLAQPRQFAWQVFDAKVV
                     HLLRDEYRIRQVTRVTADTLEELAGKLEDVDATRALETMTAYNSAVRTDIPFDPNVKD
                     GRGTVGLEIPKSNWANTLDTPPYEAYAVTCGITFTFGGLRIDPGAQVLDVDLAPIPGL
                     YAAGEMVGGLFYENYPGGTGLMAGAVFGRIAGASAAKSAARVTHAG"
     gene            4719..>5330
                     /locus_tag="VHN39_03705"
     CDS             4719..>5330
                     /locus_tag="VHN39_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815473.1"
                     /translation="MNRNLRAVAALASLAFVALAAAPALASGFCDPEEGPCGPPPPPP
                     PPTLPGTVGTFGNYAVSLGTIQNSVFRQGVYQNGLTTFNGGGPLVPVGNNGVLTVGQP
                     NNTVTLAPTLSPLGSVMVAAVATTPQDPVFPGFDLVARGSLELSYLVDLHANNQAAAD
                     ALTNLLSVNGGIARINGDYSLTATGPSWGSVIASTGTSELANGL"
BASE COUNT          827 a         1834 c         1838 g          831 t
ORIGIN      
        1 gcgccctatc ggtctgcgcc accgttgccg aaacgccggc cgggtcgggc tacggccagg
       61 cgctggccgc gctcgcgccc gcctaccaga tgaagccgga gatggtggag gcagaggccc
      121 ccggagggct ggcagtcatc caggacgaga ccttccagtc cgagacgccg ccagcgtggc
      181 tgcacaagcc gaccgcgcac gacctgctgg ccgtctggcc gaagtcggcc tgggccaagc
      241 acctttcggg caaggccacg atcagctgcc tggtcggcct gcagggagcc atctacgact
      301 gcgcgcccat ctgggagact ccgcctggcg agagcttcgg ggccgcggcc atcgcgctga
      361 cgccgcagct cctgatgaag cctgggaccg tcaacggcca accggtggtc actgcggtga
      421 acatcccctt cgtcttcatg atgccgccgg gcggcggggg cggacatggc gagccggacg
      481 gtggtcgccc gacggcgccg gccgccatgg cctggctaca ggcgcccagc tatgccgaca
      541 tggccgcggc ctatccgaag aaagcgcgtg aggggcatct gtccggccac gtcaccgtcg
      601 actgcagctt caccaatctg ggcttcctga gcgactgcat gacgatctcg gaggagccca
      661 agggccaggg cttcggcgcc gccgcccaca atctggccgg ccgtttcaag gcgcccgccg
      721 aactgcccct caagacccgc caggccgcca atgtccagct ccccttcagc ttcgacgcgg
      781 ccgtgctgac cgacgccacg ccggcgatcg gcaagccgca gtgggcggtg ctgcccaccg
      841 cccaggaaac cgccgcggcc ttcgaggcgg tcatcaaggg cggcgtcacc gggacggtgc
      901 gggtaatgct tcattgtacg gttcagccgg gcggcggggt ttccggttgc acggtggcgc
      961 gcgaggaccc ggcgggccag ggcgtgggcg aggccgcgct cagcctcatc ccgcatttca
     1021 agatcaccac ctggacgatc gagggcctgc ccacggtggg cgggacgatc aatatccctc
     1081 ttcgttacga aggccccggc aaggagcccg cgccggccgc caagccctga ggcggatcac
     1141 ggcgtctgca gcgtccgttc caccctgcgg tcggggatga accagatcag cgacaccagg
     1201 gcgtaacagc cgatcgaggc ccagggctgg acgaaagcca ggcccgcgcc cgcggcgtag
     1261 atcgccagcg acagcttgcc cttgatgtcg cggcccatgg cctgggcgag cgcggagtcc
     1321 gggccctcgt tggtcaccag cacggtcatc aggatcgtgt aggcgatcgc ggtcatcagc
     1381 atcatgccgc cgtagagcgc cacaggcagg gccgccagat ggctctcgcc gatccaggcg
     1441 gtcgcgaagg gggtcagcga cagccagaac agcagatgca tgttcgccca caggatcgcg
     1501 ccgttcaccg agttggccag gtgcatcatg tggtggtgat tgttccagta gatcgccacg
     1561 tagacgaagc tgagcagata gatcagcagg cgcggcacga ccgccagcag gtcggccgcc
     1621 gcgacgccgg agggcagctt cagctccagc accatgatgg tgatgatgat cgccaccacc
     1681 ccgtcggtga aggccgtcag acgctccttg cccacgccgc ctgactacgc cgtcacggcc
     1741 tggcgaggcg ccgccccgac ccgggcccca gggaagatcc gcaggaagtt ttcggcgtag
     1801 aacttctccc gcaccgcctc gctgcggtca ccgagcgcgg tctcgaaccg gccgatgggg
     1861 tttcggccgc cctcgatgtg cggatagtcg gtggagaaca ggtagaggtc ctcgttggac
     1921 tggtcgatca ggtcgcccac cgcctcgaag acgaaggggg tgaaggccag ttgctgagtg
     1981 atctgctcgg acggcgtgcg cttccaggcc tgcaggttgg cgtcgttgcg gctccagtgt
     2041 ttcaccaccc agtccaggcg ccgcagcagt tcgggaaccc agccggcgcc cagctcgaca
     2101 ctggcgccgc gcagggtcgg gtgacgctcg aacaccccgt ccagcaccat catggtcagg
     2161 aactgctcgg gcccctcgtg cagcagggcg atatccttgg tccgaaggtt ctcgccgccg
     2221 cccagccagt ccttggtggg cgcgcgacca ttgttcatcc aggcccgcgc cagctgcagc
     2281 ggtgcgccgc ccacatgcag gacgaagggc gcgccgcttt cggcgagccg cgcccagaag
     2341 gggtcgaggt ccaggtggcc gggcgaacgt tcgccgcagg gccggtgcgg aatccaggcg
     2401 gccttcagtc cgctttccag cgcgaagtcg agctccgcca tggccaggtc cggatcgtcc
     2461 agcggcacga cggcgacgcc catcagccgg tcgtcggatt tgcagaagtc ggccatgtgc
     2521 cggttgtgcg cgcgggccgc gccatagcgc aggcggggtt ccagcttcga tgaggcggag
     2581 aacggcatga cgaccgagtg ggtggcgaag accagctgct tcttgaagcc gagcaggtcg
     2641 agcgccttgg tgcggtcggc gctgttgaag gcgcccagcg cctggatctc cttggaggat
     2701 tcgatcagct tgtcgccgag cgcgatctgc gcggccacgt gctcggcgct gtgccggccg
     2761 ccctgggcca tcagcacggc cacctcctcg tcggtgacga tggaggccga gtagctgacc
     2821 tcggggatct cgtcgcggag cgccgggtcg gcgtaggcct tgaggaaggt cggcagctcc
     2881 atgatgtggc tgtcggcgtc gtagcacggc cggccctcgg gcgcgtaggt catgggatcc
     2941 tcctgctttt tcttcagact atgggccgtc agccggcgtg agtcacacgg gcggcgctct
     3001 tggccgcgga cgcgccggcg atgcggccga agacggcgcc ggccatcagg cccgtgccgc
     3061 ccggatagtt ctcgtagaag aggccgccca ccatctcgcc cgccgcgtag aggccaggga
     3121 tgggcgcgag gtcgacgtcg agcacctggg cgcccggatc gatcctgagg cctccgaagg
     3181 tgaaggtgat gccacaggtc acggcgtagg cctcgtaggg cggggtatcc agcgtgttgg
     3241 cccagttgga tttggggatc tccagcccga ccgtcccacg cccgtccttc acattgggat
     3301 cgaaggggat gtctgttcgc acggcggaat tgtaggcggt catcgtctcc agcgcgcggg
     3361 tggcgtccac gtcctccagc ttgccggcaa gctcttcgag tgtgtcggcg gtgacgcggg
     3421 tcacctggcg gatgcggtat tcgtcgcgca gcaggtggac caccttggcg tcgaagacct
     3481 gccaggcgaa ctggcgcggc tgggccagca cctcgcggcc gtatttggcg taggtgtagt
     3541 tgcggaaatc ggccccctcg tcgaggaacc gctttccctt cgcattgagc agaatcccga
     3601 acgggtagga gtgcttctgg aagccgtcgc cgacggcgag gtcgccgaac tcaggcgcgt
     3661 tgcgctccca ctgcaccgcg tggctgcccg accactggcc ggtcggcatg gccccgatgt
     3721 cgagcgccat gcgcaggccg tcgccagtgt tgaaccgcga gccccgcacc ttggccaggt
     3781 cccagccggg gccgaggtag cgggtgcgcc attcggtgtt ggcctggaag ccgccggcgg
     3841 ccaggaccac ggcgcgggcg gggacgtcgc gggtcacgcc gtactgcttg acgcggaccc
     3901 cgtggacgcc gccatcgtcg gcgatcagcg agaccgcccg cgcgccgtag agcacttcga
     3961 ttccggcgcg ctcggcaatc tgtgtccagg cctccaccag ccccggcccg ccggcccaag
     4021 cctcgacggt cagccctccc cagaacctga accggccatc gaccttgaag gcctggcgtc
     4081 cccagatcgg ggcgaagcgg acgccctggt cgcgcatcca gaacatcgtc tcgcggctgc
     4141 gggtcacgag caattcgcag agctccggat cggtgcggta ttcggtgacc cgtcccatgt
     4201 cctcgaagaa ctggctctcc ggataggcgc cgaagtcggt ggccgccacc tcggcgtcgg
     4261 tgaggtccgg catcagtcgg cgcaggtcgt ccaccccgtc ataggcgaag cgcatggcgc
     4321 cggccgtgaa ggccgtgttg ccgccggcca gcgcgcgcgg gctgcgctcc aggacggaga
     4381 cccgggcgcc ctgctcggcg gccgaaaccg ccgccgcgaa cgccgcgttg cctgcgccca
     4441 ccaccaccac gtcggccatg cgtcgctatt tccctcgccg cgcgttcgga gcttagggcg
     4501 cgaggcccgg ggatgcgaag cgtgaaacgg gacagcggcg ccgtcccggc ccgccatcga
     4561 ctcccgccac aggcttgaaa tacccctgtg aggcgaattt ccgtaataaa atccgataga
     4621 catgcctttt taggcaatag agacgccctg ccgcctcctg tagtcctcct ggccggactg
     4681 gggccttcgg cgcccctggg tgttggagat ctgcacggat gaacaggaat ttgcgggccg
     4741 tcgcggccct ggccagcctc gcctttgtgg cgcttgcggc cgcaccggcg ctcgcgagcg
     4801 gcttctgcga cccggaggag ggtccgtgtg gtccgccgcc gccgccgccg ccgccgaccc
     4861 tgcccggcac ggtcgggacg tttggcaact atgccgtcag cctcggcacg atccagaaca
     4921 gcgtgttccg gcaaggcgtc tatcagaacg gtctgaccac cttcaacggt ggcggcccgc
     4981 tggttccggt gggaaacaac ggcgtgctca cggtcggtca gcccaacaac accgtcacgc
     5041 tcgccccgac cctgtcgccg ctgggctcgg tgatggtcgc ggcggtggcg acaacgccgc
     5101 aggatcctgt cttccccggt ttcgacctgg tggcccgtgg cagccttgag ctcagctatc
     5161 tcgtcgatct ccatgccaac aaccaggcgg cggccgacgc gctgaccaac ctcctgtccg
     5221 tgaacggcgg catcgccagg atcaacgggg actacagcct gacggcgacc gggccctcct
     5281 gggggtcggt gatcgcctcg actggaacca gcgagctggc caacggcctg
//
LOCUS       DATAJL010000196         4004 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117328,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000196 DATAJL010000000
VERSION     DATAJL010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4004)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4004)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4004
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117328"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..273)
                     /locus_tag="VHN39_03710"
     CDS             complement(<1..273)
                     /locus_tag="VHN39_03710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEX2815474.1"
                     /translation="MTEPTLDRRMLLGGVALAGAVAATSVAAQTPPPAAPAYAPQPLP
                     FDPKAVAGLSEKLLVSHHDNNYVGAVKRLGAIRAEFGKLDPATAPVF"
     gene            497..964
                     /locus_tag="VHN39_03715"
     CDS             497..964
                     /locus_tag="VHN39_03715"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX2815475.1"
                     /translation="MAIETRPRKTLRTDARALVEACPGCNSRIAARRITQFLDREIAS
                     IGLSVGQLGLMAQIAVAADDTLRALAQRTGLDQSTLSRNLRTLESAGLVEIAVIETDL
                     RRRSAWLTETGARRLEAAIPLWRKAQARLAKRLSPDLARRLADEAETLAGDPA"
     gene            961..1563
                     /locus_tag="VHN39_03720"
     CDS             961..1563
                     /locus_tag="VHN39_03720"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2815476.1"
                     /translation="MSSRAAAAAAPFPPPARTDSFHGWVTELVHRHRARLIRVARREG
                     VRADDALDCVQESFVSFLSLPQARLLVGLPEDSARMLVILARNIARNRRRRHDYARPH
                     VADDATVLGLAADTASADELIAAAERHAMALGCMVTLSEVQRAVVGLRLIDEVSGEDV
                     ARELGVSPGHVAVLLFRAKQHLRACVSGAEAALGPKLAPA"
     gene            complement(1622..1933)
                     /locus_tag="VHN39_03725"
     CDS             complement(1622..1933)
                     /locus_tag="VHN39_03725"
                     /inference="COORDINATES: protein motif:HMM:TIGR02118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EthD family reductase"
                     /protein_id="HEX2815477.1"
                     /translation="MSVQLLVIYPPPKDPAEFDRAYREEHLPYAGPRLVGATGVTTRK
                     VLGAPGGAPFAYNISFVEFPSAEAAKACAQSASGQEALKHAASISSGGPPQFLLIDDA
                     A"
     gene            complement(2022..2372)
                     /locus_tag="VHN39_03730"
     CDS             complement(2022..2372)
                     /locus_tag="VHN39_03730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3147 family protein"
                     /protein_id="HEX2815478.1"
                     /translation="MLYLILKAAISGVIIAIVSETAKRSPGAGALIASLPLVSILGMI
                     WLWRDTGDPVRMESHVGATFWYVLPSLPMFLLIPALLKRGVPFWAALGAGCVLTIGLY
                     LGMTAIGPRFGLRL"
     gene            complement(2382..2939)
                     /locus_tag="VHN39_03735"
     CDS             complement(2382..2939)
                     /locus_tag="VHN39_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815479.1"
                     /translation="MAAASAVTVVAGLPIPSTSPVFLAVVAVHVAVALGCVIAGAVAM
                     LSRKRTGRHPTFGTIYFWGLAVVFATAGALSALRWAEDRLLFALAVLALGAAWFGRTA
                     MRRRWSGWPRLHIAGMGSSYILLLTAFYVDNGKNLPLWRDLPPIAYWLAPAAIGLPLM
                     IYAMLRHPVVRAHGDQQGWRTPPGA"
     gene            complement(2926..3624)
                     /locus_tag="VHN39_03740"
     CDS             complement(2926..3624)
                     /locus_tag="VHN39_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MIP/aquaporin family protein"
                     /protein_id="HEX2815480.1"
                     /translation="MSADASLEPPLGDFSVGRRLAAEALGTALLLAVVVGSGIMGERL
                     AGGNAAIALLANTLATGTGLVVLITVFGPISGAHFNPAVTLVFAIRRELGARMAAAYV
                     AAQIASGVLGVWAAHAMFAEPIWQVSTKLRDGPAQAWSEAVATFGLILTILGTIRFRP
                     QATPAAVGLYIAAAYWFTASTSFANPAVTLARSLSDTFAGIAPSSAPAFIAAQLAGAL
                     AAASLCKWLLDGRR"
     gene            complement(3621..>4004)
                     /locus_tag="VHN39_03745"
     CDS             complement(3621..>4004)
                     /locus_tag="VHN39_03745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HEX2815481.1"
                     /translation="NPHALTLLSRLNHGIQGLRSKPWEEFSRANNPEAPELQFVFTVC
                     DNAAGEVCPIWPGQPMTAHWGIPDPAAATGSEAEIGIAFADAYRQLNNRIMLFVNLPM
                     TSLDRLALQERLDRIGAARDAPERA"
BASE COUNT          615 a         1378 c         1473 g          538 t
ORIGIN      
        1 gaagaccggc gcggtcgccg ggtcgagctt gccgaactcc gcccggatcg ctcccagccg
       61 cttcaccgca cccacgtagt tgttgtcgtg gtggctcacg agcagcttct cggagagccc
      121 ggccaccgcc ttgggatcga agggcagggg ctgcggcgcg taggccggcg cggcgggcgg
      181 cggggtctgc gcggccacgc tggtggcagc gacagcgccg gccagggcga cgccgcccag
      241 cagcatgcgg cggtcgaggg tcggttcagt catggggagt ctccaggatg tcgatcatgc
      301 gcatgctccc tcccggcgca tcggccggat ctacgggagc gggtcttgga cggcgcgccg
      361 tctcagctcc gggcgcccgc gtcggcccgg aagacgccag actatgccca tcgccgccgg
      421 gttcaagcct cgctccgccg gcgcggccac caacggggct tccatgtatc tacatattat
      481 gtatatacat gtttcaatgg caattgagac ccggccgcga aagactctgc gcaccgacgc
      541 ccgcgccctg gtggaggcct gcccgggctg caacagccgc atcgccgcgc ggcgcatcac
      601 ccagttcctc gaccgcgaga tcgccagcat aggcctgagc gtcggccagc tcggcctgat
      661 ggcccagatc gccgtcgctg ccgacgacac cctgcgggcg ctggcccagc gcacgggcct
      721 cgatcagtcg acgctctcac gcaatctgcg caccctggag agcgcgggcc tggtggagat
      781 cgcggtcatc gagaccgatc tgcgccgccg ctcggcctgg ctcacggaaa cgggcgcacg
      841 ccggctggag gccgccattc cgctctggcg caaggcgcag gccaggctgg cgaagcgtct
      901 gtccccggac ctggcccggc gcctggccga tgaggccgag actctggcgg gggatccggc
      961 atgagctcgc gcgccgccgc ggctgcggcg ccgttccccc cgccggctcg cacggacagc
     1021 ttccacggat gggtcacgga actggtgcac cggcatcggg cgcggctcat ccgggtggcg
     1081 cggcgcgagg gcgtgcgggc cgacgatgcg ctggactgcg tgcaggagtc cttcgtgagt
     1141 ttcctgagcc tgccccaggc ccggctgctt gtcgggctgc cggaggattc ggcccggatg
     1201 ctggtcatcc tggcccgcaa catcgcgcgc aatcgaaggc ggcgccacga ctacgcccgg
     1261 ccgcatgtgg ccgacgacgc gacggtcctg ggactggccg cggacacagc gtccgccgac
     1321 gagctgatcg ctgccgccga gcggcacgcg atggcgctgg gctgcatggt gacgctgtcg
     1381 gaggtccagc gcgcggtggt ggggctccgc ctgatcgacg aggtctcggg cgaggacgtc
     1441 gcccgcgagc tgggggtgag cccgggccac gtggcggtgc tgctgttccg ggccaagcag
     1501 catctgcggg cctgcgtcag cggcgccgag gcggcgctgg ggccgaagct ggcgccggcc
     1561 tgagccgggc tgccaaggga tcgcgccctt gccgcgcgac cccccgaagc aggcctttcg
     1621 tctaggccgc gtcgtcgatc agcaggaact gtggcggccc gccgctggaa atcgaggcgg
     1681 cgtgtttcag cgcttcctgg ccgctggccg attgcgcgca ggccttggcc gcctcggcgc
     1741 tcggaaactc cacgaaggag atattgtagg cgaagggggc gccgcccggc gcgcccagca
     1801 ccttgcgggt ggtcaccccg gtggcgccga caagccgcgg cccggcgtag ggcaggtgtt
     1861 cctcgcggta ggcgcggtcg aactccgcgg ggtccttggg cggcgggtag atgacgagca
     1921 gttgcacgga catggtcggt ctccttgggt tgggggctac ccctccctag gtgtcggccg
     1981 gcccggacat tacaggcgcc gcgcgaaatt ccgccggcgg cctagaggcg cagcccgaac
     2041 cttggaccga tcgccgtcat gcccagatag aggccgatag tcaggacgca gccggccccc
     2101 agggcggccc agaagggaac gccgcgcttc aggagcgccg ggatcaggag gaacatcggc
     2161 agcgacggca gcacgtacca gaaggtcgcg cccacgtggc tctccatgcg caccggatcg
     2221 ccggtgtcgc gccacagcca gatcatcccc aggatcgaga ccaggggcag ggaggcgatc
     2281 agcgcgcccg cgcctggcga gcgtttggcg gtctccgaga cgatggcgat gatcacgccg
     2341 gagatcgcgg ccttgaggat cagatagagc atggcgcaag cttacgcgcc gggcggcgtt
     2401 cgccaaccct gctggtcgcc atgggcgcgc acgaccggat ggcgaagcat ggcgtagatc
     2461 atcagcggca ggccgatggc cgccggcgca agccaatagg cgatcggcgg caggtctcgc
     2521 cagagcggca ggttcttgcc gttgtccacg tagaaggcgg tcagcagcag gatataggac
     2581 gaccccatgc ctgcgatgtg caggcgcggc cagccggacc atcggcggcg catcgccgtg
     2641 cgcccaaacc acgccgcgcc gagggccagg acggccaggg cgaacagcag ccgatcctcc
     2701 gcccagcgca gggccgagag cgcgcctgcc gtggcgaaga cgaccgccag cccccagaag
     2761 tagatcgttc cgaaggtcgg gtggcggccc gtccgcttgc ggctcagcat cgccacggcg
     2821 ccggcgatta cgcagcccaa tgccacggcg acatgaacag ccacgaccgc caggaagacc
     2881 ggcgatgtcg aaggtatcgg caaccccgcc acgacggtga cggcgctagc ggcggccatc
     2941 gaggagccat ttgcagaggc tcgccgccgc cagggccccg gccagctgcg ccgcgatgaa
     3001 ggccggagcc gagctgggcg cgatgccggc gaaggtgtcc gacaggctgc gggccagggt
     3061 caccgccgga ttggcgaaag acgtcgaggc ggtgaaccag taggccgcgg cgatatagag
     3121 gcccaccgcc gccggcgtcg cctggggccg gaaccggatc gttccaagga tggtcaggat
     3181 caggccgaag gtcgccaccg cctccgacca ggcctgggcc ggtccgtcgc ggagcttggt
     3241 cgagacctgc cagatcggct cggcgaacat ggcgtgggcc gcccagacgc ccagcacgcc
     3301 gctcgcgatc tgcgccgcca cataggccgc cgccatgcgc gcgccgagct cgcggcggat
     3361 cgcgaagacc agggtcaccg ccgggttgaa gtgcgcgccg gagatcgggc cgaagacggt
     3421 gatcagcacc accagccccg ttccggtggc cagcgtattg gcgagcagcg caatggcggc
     3481 gttcccgccg gccaaccgct cgcccatgat ccccgagccc accacgacgg cgagcagcag
     3541 ggccgtgccc agcgcctcgg cggcgaggcg gcggcccacg ctgaaatccc cgagcggcgg
     3601 ctcgagactg gcgtcggcgc tcatgcccgc tccggcgcgt cgcgcgcggc gccgatgcgg
     3661 tcgagccgct cctgcagcgc cagccggtcg agggatgtca tcggcaggtt gacgaacagc
     3721 atgatgcggt tgttgagctg gcggtaggcg tcggcgaagg cgatgccgat ttcggcctcg
     3781 gatcccgtgg ccgccgccgg atcgggaatg ccccagtgcg cggtcatcgg ctggcccggc
     3841 cagatcggac agacctctcc ggcggcgttg tcgcagacgg tgaagacaaa ctgcagctcg
     3901 ggcgcctcgg gattgttcgc gcgggagaat tcctcccagg gtttggagcg caggccctgg
     3961 atcccgtggt tcagccggct gagcaaggtg agcgcgtggg gatt
//
LOCUS       DATAJL010000197         4066 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54515,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000197 DATAJL010000000
VERSION     DATAJL010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4066
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54515"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..919)
                     /locus_tag="VHN39_03750"
     CDS             complement(209..919)
                     /locus_tag="VHN39_03750"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2815482.1"
                     /translation="MSAVAQQKSTQNWEEYYANLKASYLFPNEFVVRTFLAHYPNLDM
                     PHNYQGAKVCDVSCGDGRNLVLLNKLGLELFATEVSPSICEVTRQKLAQHSDRIAADI
                     RPGVNYDLPFEDDAFDYLLSWNAIYYMRDAESDFREHVREHARILKPGGYLVCSVPGP
                     NCFSLAGAEELGNDLIRIKTNSKWNMLNGTIYRRFRDFDDIESTFGECFEGFRRASIQ
                     DDCYGLPLEYSIFVCRKK"
     gene            complement(968..2683)
                     /locus_tag="VHN39_03755"
     CDS             complement(968..2683)
                     /locus_tag="VHN39_03755"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2815483.1"
                     /translation="MSALAALDGLETPDRLTQGLAAFQAGDFAAAIGHFQTRVMQAPD
                     DYEARYWLASAAGAAGATDEAAGILSDARAVHAQAFLAAAGVDIIRLRTDKAYAFQIG
                     NNCYVQKFMAAATECFGRALDFDNLDPTMMLSYGLSLQHQGRVQEAVDVFTAASEVFA
                     IPSVHQFLLYPLLLVEDRAARVFAESRRWGELYAPAPTEPPPTFANPRTAERRLRIGY
                     LGPSFTKNQVAPSTVPVFEAHDPQAVEVFLYTPDPDAEGPLPATCTVRKIGGLSDEDA
                     AALIRRDKIDILVDVWGHTSGSRLRVFTLRPAPVQFGWINFMQSTGLTCMDYVMHADS
                     LEVPGDEAYFTEEIWRTGEIMAPYRPSPDRHPPVPTPALRNGYVTFGSFNNPAKLNDA
                     TVAAWAKILKARPNDRLVLKYSMFVDPVLQRVTQARFAAHGAGPHQLEFRGHSTGADY
                     TREFQDIDLALDPSPTPGGTTTVDAIANGTPVLALKGDDFYSRSPLALLLPCGLGELV
                     AESWDGYVEKALALTADLGALDALRARIRPAFDNSPYRDEVGFTRRLEADYRRMFQRW
                     VDKTA"
     gene            complement(2737..3390)
                     /locus_tag="VHN39_03760"
     CDS             complement(2737..3390)
                     /locus_tag="VHN39_03760"
                     /inference="COORDINATES: protein motif:HMM:NF020463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WbqC family protein"
                     /protein_id="HEX2815484.1"
                     /translation="MTAIAIMQPYFLPYAGYFRLIAQTDIFVIYDCVQFPRRGWVHRN
                     KLADAQGQDQWLTLPLTPAPQDTLIRDLAFPDDAASALAERLRPFPVAARVGPHTPLL
                     ERVRRVEGRPVNYISGLLEEATRLLDLPWNVVRSSSLDVPDHFRAQARILEIARRLGA
                     TRYLNAPGGRDLYETQTFADAGIELGFLEPWAGAGGSILQRLADDDLPALAHQVRHG"
     gene            complement(3400..>4066)
                     /locus_tag="VHN39_03765"
     CDS             complement(3400..>4066)
                     /locus_tag="VHN39_03765"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX2815485.1"
                     /translation="ANAARLLAVDVEAYINTARMTQMLASAHQLMASDAIVDIVRALG
                     LGFPVISTRLSNHIMSDVLRIPGGYHKSPPHQDWRSMQGSLDSVVLWAPTTPVTERSH
                     PLQVAPGSHLLGLLDTVEHIMTPMVSDPRITEDSYVSLPMQPGDVVAFSSFLVHRTGE
                     TGDGQLRIAFSTRYNNAEEPAYVEHGYPTPYKYSYRTDLMVPDFPKPADIARIFPDAA
                     SGD"
BASE COUNT          662 a         1266 c         1447 g          691 t
ORIGIN      
        1 ctggcgtggt tgaaggtgat gatcatcacc gtcaccttcg gccgaccggc ctggccttct
       61 tgggcgagag gcggcggcag acccgccgcc gggcgtggcg cttcggtggc gccccgcgcc
      121 tcgatgacgt ccaggtcggt cgaggttgaa atcatgcctg gcgcccctgc gaggttacag
      181 agccgcgatt ctgttccttg gcgtgatgct atttctttcg gcagacgaag atggagtatt
      241 cgagaggcag gccgtagcag tcgtcctgga tgctggcgcg gcggaagccc tcaaagcact
      301 cgccgaacgt cgactcgatg tcgtcgaagt cccggaagcg gcgatagatc gttccgttga
      361 gcatgttcca ttttgaattt gttttgatcc tgatcagatc gttcccaagc tcttccgcgc
      421 cggccaggga gaagcagttc ggtccgggga ccgagcagac gagatagccg cccggcttga
      481 ggatccgggc atgttcccgg acgtgctctc gaaaatcgct ctcggcgtcc cgcatgtaat
      541 agatggcgtt ccaggacagc aggtagtcga aggcgtcgtc ttcgaacggc aggtcgtagt
      601 tgaccccggg gcggatatcc gcggcgatgc ggtcgctgtg ctgcgccagc ttctggcggg
      661 tcacctcgca gatcgaggga ctaacctcgg tggcgaacag ctccagcccc agcttgttca
      721 gcagcacaag gttgcggcca tcgccgcaac tcacgtcgca gaccttcgcg ccctggtaat
      781 tgtgcggcat gtcgaggttg gggtagtggg cgaggaaggt ccgcaccacg aactcgttcg
      841 ggaagaggta cgacgccttc aagttggcgt agtactcttc ccaattctgc gttgatttct
      901 gttgagctac tgcgctcacg ggctgtctcc ttgcaggcct cggctaagag ccaagggcct
      961 tttcatctca agccgtcttg tccacccaac gctggaacat gcggcggtag tcggcctcca
     1021 gccggcgggt gaagccgacc tcgtcgcgat agggcgagtt gtcgaacgcc gggcggatgc
     1081 gggcccgcag cgcgtccagc gcgcccaggt cggcggtgag cgccagggcc ttttcgacgt
     1141 acccatccca gctttcggcc accagctcac cgagcccgca gggcaggagc agggccaaag
     1201 gcgagcgcga atagaagtcg tcgcccttca gcgccagcac cggcgttcca ttggcgatgg
     1261 cgtccaccgt ggtggtgccg ccgggcgtcg gcgacggatc gagcgccagg tcaatgtcct
     1321 ggaactcgcg ggtgtagtcc gcccccgtgc tgtggccgcg gaactccagt tggtgcggcc
     1381 ccgcaccgtg cgcggcgaac cgcgcctggg tcacccgttg cagcaccggg tcgacgaaca
     1441 tgctgtactt cagcaccagc cggtcgttcg gccgcgcctt caggatcttc gcccaggccg
     1501 ccactgtggc gtcgttcagc tttgccggat tgttgaatga gccgaaggtg acgtaaccgt
     1561 tccggagcgc cggagtcggg accggcggat gccggtctgg gctcggccgg tagggcgcca
     1621 tgatctcgcc ggtgcgccag atctcctctg tgaaataggc ctcgtcgccg ggaacctcca
     1681 gggagtcggc atgcatgacg tagtccatgc aggtcaggcc cgtggactgc atgaagttga
     1741 tccagccgaa ctgcaccggc gcgggccgca gcgtgaacac ccgcagtcgg ctgcccgagg
     1801 tgtgtcccca gacgtccacc aggatgtcga tcttgtcgcg ccggatcagc gcggcggcgt
     1861 cctcgtcgga gaggccgccg atcttgcgga cggtgcaggt cgcgggaagg gggccctcgg
     1921 cgtccggatc cggagtgtag aggaagacct ccaccgcctg cggatcatgc gcctcgaaca
     1981 ccggcacggt ggacggcgcc acctgattct tggtgaagct cgggccgaga tagccgatcc
     2041 gcaggcgccg ttctgcggtt cgcgggttgg cgaaggtcgg cggcggctcg gttggggcag
     2101 gggcgtagag ctcgccccag cgccggctct ccgcgaacac cctcgccgcg cgatcctcca
     2161 ccagcaacag cggatataga aggaactggt gcaccgacgg gatggcgaac acttcggagg
     2221 ccgccgtgaa gacatcgacc gcctcctgga cccggccctg gtgctgcagg gacagcccgt
     2281 agctcagcat catggtcgga tcgagattgt cgaaatccag cgcacggccg aagcactcgg
     2341 tggccgcggc catgaacttc tggacgtagc agttgttgcc gatctggaag gcgtaggcct
     2401 tgtcggtccg cagccggata atgtccacgc cggcggcggc cagaaaggcc tgggcgtgaa
     2461 cggcgcgcgc gtcgctcagg attcccgcgg cctcgtcggt cgcgcctgcg gcgcccgcgg
     2521 cgcttgccag ccagtagcgc gcttcgtagt cgtccggggc ctgcatgacc cgcgtctgga
     2581 agtggccgat ggcggcggcg aagtcaccgg cctgaaacgc agcgaggccc tgggtcagcc
     2641 gatcgggagt ctcaaggcca tccaaggccg ccaacgcgct catcaatgtc tccgggtcct
     2701 gcgcggcgac tatcggcgga cccgattgat gaggcgttaa ccatgtcgca cttggtgggc
     2761 gagcgccggc aggtcgtcgt cggcgagccg ctgcaggatc gagccgccgg ccccggccca
     2821 gggttcgagg aaaccgagct cgatccccgc gtcggcgaag gtctgcgtct cgtagaggtc
     2881 gcgcccgccg ggggcgttca ggtaccgtgt cgccccaaga cgccgggcga tctccaggat
     2941 gcgcgcctgg gcgcggaagt gatcgggcac gtccaatgac gaggaccgca ccacgttcca
     3001 cggcaggtcc aagagccgag tggcttcctc caggaggccg ctgatgtagt tgacggggcg
     3061 cccctccacg cgccggaccc gctccagcag gggcgtgtgg ggcccgaccc gcgcggccac
     3121 cggaaaggga cgcaggcgct cggccagggc agacgccgcg tcatcgggaa acgccaggtc
     3181 gcggatcagc gtatcctgcg gggccggcgt gaggggcagg gtgagccact ggtcctgccc
     3241 ttgggcgtcg gccagcttgt tccgatgcac ccagccgcgc cgcggaaact gcacgcagtc
     3301 gtagatgacg aagatgtcag tctgggcgat cagccggaaa tagcccgcat agggcaggaa
     3361 gtagggctgc atgatcgcga tggccgtcat ggccggcggt cagtccccgg aggcggcatc
     3421 ggggaagatg cgcgcgatgt ctgcaggctt ggggaagtcc gggaccatca gatcggtgcg
     3481 gtaggagtat ttgtacggtg tcgggtagcc gtgctcgacg taggccggct cctcggcgtt
     3541 gttgtagcgg gtgctgaacg cgatccgcag ctggccgtcg ccggtctcgc ccgtgcgatg
     3601 caccaggaac gacgagaagg ccaccacgtc gccgggttgc atgggaaggg agacgtaact
     3661 gtcctcggtg atgcgcgggt cgctgaccat gggcgtcatg atgtgttcga cggtgtcgag
     3721 caggcccagg aggtgcgagc cgggcgccac ctgcaacggg tgcgaacgtt cggtcaccgg
     3781 cgtggtcggc gcccacagga cgacagagtc caggctgccc tgcatgctgc gccagtcctg
     3841 gtgcggcggc gacttgtggt agccgccggg gatgcgcagg acgtcggaca tgatgtggtt
     3901 ggagagccgc gtcgagatga cagggaagcc gagccccagg gcgcgcacga tgtcgacgat
     3961 ggcgtccgac gccatcagtt ggtgcgcgga ggccagcatc tgggtcatgc gggcggtgtt
     4021 gatgtaggcc tcgacgtcga cggccagcag gcgcgcagcg ttggcc
//
LOCUS       DATAJL010000198         4401 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_16030,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000198 DATAJL010000000
VERSION     DATAJL010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4401
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16030"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VHN39_03770"
     CDS             complement(<1..344)
                     /locus_tag="VHN39_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815486.1"
                     /translation="MAGANETDMDALSELWRRNEPSTEGLRTEVRARGRFMAVVVAVE
                     VLLGLGAAGIGVWAISLGTSYSLLAGAFALAFAGFSVAVSWGAHRGEAWGADALAVSD
                     QLDAAIRQTQAIR"
     gene            complement(349..855)
                     /locus_tag="VHN39_03775"
     CDS             complement(349..855)
                     /locus_tag="VHN39_03775"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2815487.1"
                     /translation="MDASRAETPSFETVARAHGGMLWRIAASYELDPDRRRDLHQDIL
                     FALWKALPRFRGDCPLAAFAARVAHNRGVSHVAREVARPRARELDPQTPLGDPSPEEE
                     LADRDRRERLMSAVHALPLGLRQPTVLTLEGFHPREIADILGLEVNAVSIRLTRAKAL
                     LRTALKED"
     gene            985..1227
                     /locus_tag="VHN39_03780"
     CDS             985..1227
                     /locus_tag="VHN39_03780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815488.1"
                     /translation="MRWKPLILTAAALTVLAAWTTVAVTYFLGFKVGAWTVVVTIACL
                     ATEGAFWVSAAILGVTVIQARRDIWRWLTRPLRSDA"
     gene            1417..2658
                     /locus_tag="VHN39_03785"
     CDS             1417..2658
                     /locus_tag="VHN39_03785"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2815489.1"
                     /translation="MRFGIFYEHQLPKPWNDGDEARLFHQALEQVVLADRLGYDYAWE
                     VEHHFLEEYSHSSAPEVFLAACAALTKTIRVGHGIRQVIPNYNHPARTAEGLATLDII
                     SNGRLDFGIGEGATRLELGGFAIPAKEKRALALEAAEQIANMMVMDPYPGFEGRGFSF
                     PCRNVVPKPVQKPHPPMWMACTNRDTIKVAAANGVGALAFSFVNPEEARDWAEIYYGI
                     IKSDECVPLGRSVNANMAMVSNFSVHPDRAEAVRRGQEGFEFFSYAVNALVAHDAIPG
                     RSSLFADFQASRARSDEEIIAATRAAARNANGIGTPADIRDHIRAFSDAGVDQVIFLQ
                     QAGRNKHEHICQSLELFAAEVMGEFKAEVAEREAKKAAELAPYIAAAMARKVWMQPLA
                     DGDIPVVPASRAKAQINEVAK"
     gene            complement(2755..3261)
                     /locus_tag="VHN39_03790"
     CDS             complement(2755..3261)
                     /locus_tag="VHN39_03790"
                     /inference="COORDINATES: protein motif:HMM:NF038126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxDxF family PEP-CTERM protein"
                     /protein_id="HEX2815490.1"
                     /translation="MAASLAILMLAAAPAANAAQMITLNPAEPDGSISGAFMDSGIAG
                     GSFTDTFTFVFPQSGISAATISSILTTQMNNVSFTAVTLDGAAFTTDSTGAFESRHLP
                     GMETLAGTQTLIVSGTSGGSGAFAGTLAFAPLAFVPEPASWSLMIIGFGGLGAVLRTR
                     KRAQPATA"
     gene            3644..>4401
                     /locus_tag="VHN39_03795"
     CDS             3644..>4401
                     /locus_tag="VHN39_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815491.1"
                     /translation="MPFTVTETGDDTFLLSPGQSQHVDLQKVLALTQATTVDLFTSAD
                     APGVSIWAVDPANAQLLSQGAAFQGTLLNPQGQFGLTTVALPAGEWLFGATDNSLTGA
                     QSTHAFIDASTLSFPGVPAAGNVPMAVFGNPGAWRSVGFTVSDHPQGFIETEATGGQF
                     VIMTDTQFHTFQTEFPHGYVGGDFAFVATAGAPGTDLQTDVILPAGNYDVVWLNDTSS
                     WAGGAANVSFFANTTGTAGASFTGSGTPNGTGSNV"
BASE COUNT          731 a         1590 c         1392 g          688 t
ORIGIN      
        1 cggatggcct gggtctgacg gatggccgcg tcaagctggt cgctgaccgc cagggcgtcg
       61 gcgccccagg cctcaccgcg atgcgcgccc cagctgaccg ccaccgaaaa gcccgcgaag
      121 gccagggcga aggcgccggc cagcagtgaa tagctggtcc ccaggctgat cgcccagacg
      181 ccgatccccg cggcgcccaa ccccagcagg acttcgaccg cgaccacgac ggccatgaac
      241 cgccctcgcg ccctcacctc ggtccgaagg ccttccgtcg acggctcgtt gcgccgccag
      301 agttcgctga gcgcgtccat atccgtctcg tttgcgccgg ccatggtctc agtcctcctt
      361 cagcgccgtt ctgagcagag ccttggcgcg ggtcaggcgg atcgagaccg cattgacctc
      421 caggcccagg atgtccgcga tctcgcgggg gtggaaacct tccagcgtca acaccgtcgg
      481 ctggcgcagg cccagcggca gggcgtggac cgccgacatc aaccgttccc gccgatcacg
      541 gtccgccagc tcttcctcag gcgacggatc gccgagcggc gtctgcggat cgagttcccg
      601 cgcccgcggc cgcgccacct cgcgcgccac atggctcaca ccccggttgt gcgccacccg
      661 ggcggcaaag gccgccagtg ggcagtcgcc gcggaagcgc ggcagggcct tccacagggc
      721 gaacaggatg tcctggtgca gatcgcgccg gcgatcgggg tccagctcgt agctcgccgc
      781 gatccgccaa agcatgccgc cgtgggcgcg cgccacggtc tcgaagcttg gcgtctcggc
      841 gcgcgatgcg tccacggggg tccttccggc agtcgctcaa cctagtccgc cccggacagg
      901 gactctttca gtatcgccga tgaaagagac gccgagcgca tcggactagt cccgcatcac
      961 cgcaaccctg caaaggaagc caagatgcgc tggaagcccc tcatcctcac cgccgccgcc
     1021 ctcaccgtcc tggccgcctg gacgaccgtc gccgtcacct acttcctggg cttcaaggtg
     1081 ggcgcctgga cggtcgtcgt gaccatcgcc tgcctggcga ccgagggggc gttctgggta
     1141 tccgccgcca tcctcggcgt cacggtcatc caggcgcggc gcgacatctg gcgctggctc
     1201 acccgcccct tgcgttcgga cgcctagccg ggccgcgccg cctagaacgt cggccttccc
     1261 ctcgaaatcg cgctcacggc gctgatccct gcgaacggcg ccgttttcgt atcgcgcccg
     1321 atcctcgcgc tccgcgaccc cttgcaaaac ccatcgcccc ggcgggcagt aatcgccagg
     1381 acctgcgcca gacgggtcgg acggagactt caggcgatgc gcttcggcat tttctatgag
     1441 caccagctcc ccaagccctg gaacgacggc gacgaggcgc gcctcttcca ccaggccctg
     1501 gagcaggtcg tcctcgccga ccgcctcggc tacgactacg cctgggaggt cgagcaccac
     1561 ttcctggagg aatattccca ctcctccgcg ccggaggtgt tcctggcggc ctgcgcggcg
     1621 ctcaccaaga ccatccgcgt cggccacgga atccgccagg tgatccccaa ctacaaccac
     1681 ccggcccgca ctgccgaggg cctggcgacg ctggacatca tctctaacgg gcggctcgac
     1741 ttcggtatcg gcgagggcgc cacgcggttg gaactcggcg gcttcgccat ccccgccaag
     1801 gaaaaacggg cgctggcgct ggaagcggcc gagcagatcg ccaacatgat ggtcatggac
     1861 ccctaccccg gcttcgaggg gcgaggcttc tccttcccct gccgcaacgt ggtgcccaag
     1921 ccggtccaga aaccgcaccc gcccatgtgg atggcctgca ccaaccgcga caccatcaag
     1981 gtggccgccg ccaacggcgt gggggccctg gccttctcct tcgtcaatcc ggaggaggcc
     2041 cgcgactggg ccgaaatcta ctacggcatc atcaagtccg atgagtgcgt accgctgggc
     2101 cgcagcgtga acgccaacat ggccatggtc tccaacttct ccgttcaccc cgaccgggcc
     2161 gaggcggtcc ggcggggcca ggaggggttc gagttcttca gctatgcggt caacgcgctg
     2221 gtggcccacg acgcgatccc cggccgctcc agcctgttcg ccgacttcca ggcctcccgc
     2281 gccaggagcg acgaggagat catcgccgcc accagggccg ccgcgcgcaa cgccaacggc
     2341 atcggcacgc ccgccgacat ccgcgaccat atccgcgcct tctccgacgc cggcgtcgac
     2401 caggtcatct tcctgcagca ggccggccgc aacaagcacg agcacatctg tcagtccctc
     2461 gagctcttcg ccgccgaggt gatgggtgag ttcaaggcgg aggtcgccga gcgcgaggcg
     2521 aaaaaggccg ccgagctcgc gccctatatc gccgcagcca tggcccggaa ggtgtggatg
     2581 cagccgctgg cggatggcga catcccggtc gtgcctgcgt cacgcgcgaa ggcgcagatc
     2641 aacgaagtcg ccaagtaacg atatgcctcg ctggagtgct catcgtggcc ccgctggcca
     2701 gacgccgccg gcttgcggac cggcggcgtc cccagagcgc tcggttctga aaacctaggc
     2761 ggtggccggt tgcgcgcgct tgcgggtccg cagcaccgcg cccagaccgc cgaagccgat
     2821 gatcatcagg ctccatgacg caggttccgg cacgaaggct aggggcgcga aggccaaggt
     2881 gccggcgaag gcgccggagc cgccgctggt cccgctgacg atcagagttt gagtgccggc
     2941 aagagtctcc atgcccggga ggtggcgcga ttcaaaggcg cctgtgctgt ccgtggtgaa
     3001 cgccgcgccg tcgagcgtca ccgccgtgaa ggagacattg ttcatctgcg tggtcaggat
     3061 cgaggagatc gtggcggctg aaatcccgga ttggggaaac acaaacgtga aggtgtccgt
     3121 gaaactccca ccggcgatcc cgctgtccat gaacgccccc gagatggaac cgtccggctc
     3181 agccggatta agcgtgatca tctgagccgc attggccgcc ggcgccgccg ccagcatcag
     3241 gatggccaac gacgcggcca tcgtaagaat tttcataact acagtccttt tttgtccaat
     3301 cccctgggcg cccaagccaa ggcgggccgc catggttccg cccccggttc gccttttttc
     3361 cgaaagctgg aaatcgtggg ccacaggacc aattcagcca caccaaccaa gccccactcg
     3421 cgctggaagc ctggagcttc gttcctggcc ccgggtgcgc tgcagtttgg cggcccgggc
     3481 ggccgggcgc agaaaatcgc cttcttccgg ccttggcggc gagagcggag ccttagcgag
     3541 gctggggcgt tccgccaccc gacgaaggat cgacgccgct gacgctcagt tcgcgtccgt
     3601 gacgtcgggg ccctcgtgaa ccgccatcca aggggaggct gatttgccct tcacagtcac
     3661 agagaccggc gacgacacgt tcctgctgtc gccgggtcag tcgcagcatg tcgacctcca
     3721 gaaggtgctg gcgctcaccc aagcgaccac agtcgatctg ttcacctccg ccgacgcccc
     3781 cggcgtttcg atctgggcgg tcgatccggc caacgcccag ctactctccc aaggcgccgc
     3841 ctttcagggg accctgctca atccgcaggg ccagttcggc ctgaccacag tggccttgcc
     3901 cgccggcgag tggctgttcg gcgcgaccga caacagcctc acgggcgcgc agtcgacgca
     3961 cgcctttatc gacgcttcca cgctcagctt ccccggcgtg cccgccgctg gaaatgttcc
     4021 catggccgtg ttcggcaatc cgggcgcgtg gcggagcgtc gggttcaccg tttccgacca
     4081 tcctcagggg ttcatcgaga ccgaggcgac gggtggccag ttcgtgatca tgacggacac
     4141 tcagttccac accttccaga cggagttccc ccacggctat gtgggtgggg actttgcctt
     4201 tgtcgcgacc gctggcgcgc cggggaccga cctgcagacc gacgtgatcc tgccggccgg
     4261 caattatgac gtcgtctggc tcaacgacac cagcagttgg gcgggcggcg cggcaaacgt
     4321 ttcgttcttc gccaacacca ctggaaccgc cggcgccagc ttcacgggga gcgggacgcc
     4381 aaacggcacc ggcagcaacg t
//
LOCUS       DATAJL010000199         2778 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_41995,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000199 DATAJL010000000
VERSION     DATAJL010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_41995"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1419)
                     /locus_tag="VHN39_03800"
     CDS             complement(<1..1419)
                     /locus_tag="VHN39_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2815492.1"
                     /translation="MFQRFFGSSNDRKVKSMQARVLKINALEPQIHALTDEALRAKTV
                     EFRERLAQGATLDDLLEEAFAVVREAARRVLGQRHYDVQLVGGMVLHQGGIAEMRTGE
                     GKTLVATAPVYLNALAGKGVHLITVNDYLAQRDAEWMGQVYEFLGLTVGTIVHGLSQE
                     QRQRSYQSDVTYGTNNEFGFDYLRDNLVYEAGEMVQRGHNFAIVDEVDSILIDEARTP
                     LIISGPTEDRSEFYKTIDLLVKELIKDPTNYDFDEKQRQVILTEEGSERIEEILLEGG
                     HLAPDTAGLYDAANVSSVHHVNQALRANILYQLDKDYIVRAGEVILIDEFTGRMMHGR
                     RLSEGLHQAIEAKEGAVIQPENQTLASVTIQNYFRLYQKLSGMTGTAATEAQEFLDIY
                     KMDVAEIPTNRPVIRIDDDDEVYRTSAEKHVAILGLIEDCYRRGQPILVGTVSIEKSE
                     QLSEMLKAHKFEIDGKKKNGVPH"
     gene            1958..>2778
                     /locus_tag="VHN39_03805"
     CDS             1958..>2778
                     /locus_tag="VHN39_03805"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEX2815493.1"
                     /translation="MTSVAKKPQQVDEVAAAVFVIDQEDIRRSGATTVPDLLRMVPGM
                     EVADLGSGGSAVSARGFNGLSANKLLILVDGRAIYLSVLSGVFWDQQLVPVEDIQRIE
                     VVRGPGATLWGANAVNGVINIVTKHAVDTLGAAATVQADTGEGGRFDARYGVQLGSAG
                     AIRLYATGRTQDRPAQFMGAQFNDHTQALQGGFRFDVDTSQIDALTLQGDAQSGSFHY
                     PPDRAVAPGLPLPTGGDFSGGDLLGRWTRTWDPKTGMSLQLYWDHVQRVTSGLTGA"
BASE COUNT          462 a          873 c          914 g          529 t
ORIGIN      
        1 gtgcgggaca ccgttcttct tcttgccgtc gatttcgaat ttgtgggcct tgagcatctc
       61 cgagagctgc tcggacttct cgatggagac cgtgcccacc aggatcggct ggccgcggcg
      121 gtagcagtcc tcgatcaggc cgaggatcgc cacgtgcttc tcggcggagg tgcggtagac
      181 ctcgtcgtcg tcgtcgatgc ggatcaccgg ccggttggtc gggatctcgg ccacgtccat
      241 cttgtagata tccaggaact cctgggcctc ggtggcggcc gtgccggtca tgcccgagag
      301 cttctggtag agccggaagt agttctggat ggtgaccgag gccagcgtct ggttctccgg
      361 ctggatcacc gcgccttcct tggcctcgat cgcctggtgc aggccctccg acaggcgccg
      421 gccatgcatc atgcggccgg tgaactcgtc gatcaggatc acctcgccgg cgcggacgat
      481 gtagtccttg tccagctggt agagaatgtt ggcgcgcagc gcctggttca catggtgcac
      541 cgaagaaacg ttcgcggcgt cgtagagccc ggccgtgtcg ggggccaggt ggccgccctc
      601 cagcaggatc tcctcgatcc gctcggagcc ctcctcggtc aggatcacct gccgctgctt
      661 ctcgtcgaag tcgtagttgg tggggtcctt gatcagctct ttcacgagca gatcgatggt
      721 cttgtagaat tcggaacgat cctcggtggg gccggagatg atcagaggcg tccgcgcctc
      781 gtcgatcagg atcgagtcca cctcgtcgac gatcgcgaaa ttgtggcctc gctggaccat
      841 ctcgccggcc tcatagacca ggttgtcgcg cagatagtcg aagccgaact cgttgttggt
      901 gccgtaggtg acgtcggact ggtaggaccg ctggcgctgc tcctgcgaca ggccgtggac
      961 gatggtgccg acggtcaggc ccaggaactc atagacctgg cccatccact cggcgtcgcg
     1021 ctgcgccaga tagtcgttga cggtgatcag gtgcacgccc ttgccggcga gcgcgttcag
     1081 atagaccggc gccgtggcga ccagggtctt gccttcaccg gtccgcatct cggcgatgcc
     1141 gccctggtgc aggaccatgc cgcccaccag ctgaacgtcg tagtggcgct ggccgagcac
     1201 ccgtcgggcg gcctcgcgga cgaccgcgaa ggcttcttcc agcaggtcgt ccagggtcgc
     1261 gccctgagcc agccgctccc ggaattcgac ggtctttgcg cgaagcgctt cgtcggtgag
     1321 ggcgtgaatc tggggttcga gcgcgttgat cttcaggacg cgcgcctgca tcgacttgac
     1381 cttgcggtca ttggaagagc cgaagaaccg ttggaacatg ctcaaggggg taggtccggt
     1441 tgatgcggtg ggcgcggctc tcgcccttcg cctgccggga gaaattcgct cttttcaggg
     1501 cgcgggagac ttaagcagcg caccccccag tgtcaacgcg accgcggggc gcggccaggg
     1561 tgaatcaagg cctctatctg ggtaatatcg agccacaatg aaggcctggt cgctcgcaaa
     1621 cgcccgttca ttcgcaggca atgccatccg ccggaacgat ttggctcgat ggatcgcgcc
     1681 tgaaattgag gtcgcgggct tggtccggcc ctgcgacgta atgtccgtat gatctgaacg
     1741 aacagatgat ccgatgaact tagtagttgc ttagaaaatc tgtgaaagat tgagttcgtc
     1801 atccgctcca gaacagtttg gatggggcgg agataccatg aaactactaa atataaccgc
     1861 gttcgtctta atgtcttttt gtgtcttggc gccgcgagcg caggcgcaag gcgtcgatct
     1921 aacgaagctt agcctggaag aactgctctc caccgaagtg acatcggtcg ccaagaagcc
     1981 gcagcaggtc gacgaggttg cggccgcggt gttcgtcatc gaccaggagg acatccgccg
     2041 ctcgggcgcc accaccgttc cagacctgct gcgcatggtt cccggcatgg aggtcgcgga
     2101 tctgggctcg ggcggctcgg cggtgtccgc acgggggttc aacggcctct cggcgaacaa
     2161 gctcctgatc ctggtcgacg gacgcgccat ctacctgtcg gtgctgtccg gggtgttctg
     2221 ggaccagcaa ctggtccccg tggaggatat ccagcgcatc gaggtcgtcc gcggaccggg
     2281 ggccaccctg tggggcgcca acgccgtcaa tggcgtgatc aacatcgtca ccaagcacgc
     2341 ggtggacacc cttggagccg cggccacggt ccaggccgac acgggcgagg gcggccggtt
     2401 cgacgcgcgc tacggagtcc aactcggctc ggcgggcgcg atccgcctct acgcgactgg
     2461 ccgcacccag gaccgacccg cccagttcat gggcgcgcag ttcaacgatc acacccaagc
     2521 gctccagggc ggctttcgct ttgacgtcga cacctcgcag atcgacgccc tgacgctcca
     2581 aggcgacgcc cagagcggca gcttccacta tccgcccgac cgggcggttg cgccgggcct
     2641 gccgctgccg accggcggcg acttcagcgg cggcgacctg ctcggccgct ggacccgcac
     2701 ctgggatccg aagaccggca tgtcgctgca gctctattgg gaccacgtgc agagggtcac
     2761 ctcggggcta acgggcgc
//
LOCUS       DATAJL010000200         1606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_3261,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000200 DATAJL010000000
VERSION     DATAJL010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3261"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..336)
                     /locus_tag="VHN39_03810"
     CDS             complement(<1..336)
                     /locus_tag="VHN39_03810"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815494.1"
                     /translation="MSTRAEEVLKGDVLDEGGADAAAILNEGRDATLRGWVIPAIIGS
                     ALLMQTLNATSINNALPAMARALHVEPLRLNVAITMYLLASAVFLPISGWMADRFGAK
                     RILMIAMVLY"
     gene            complement(333..782)
                     /locus_tag="VHN39_03815"
     CDS             complement(333..782)
                     /locus_tag="VHN39_03815"
                     /inference="COORDINATES: protein motif:HMM:NF024854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX2815495.1"
                     /translation="MAAAAIKTDDVSALAEALRAPLLRVSRRLRQEAQKVGLSAQDAV
                     ILGYLKKNPGAGVSELADFEQISRPTMSSHVKRLAAAGWVARTDDAEDGRRQGLTVTA
                     AGLRKHDALQRHRNDWLAARLVRLTPAERERLAEAAAPLLKLVSLDG"
     gene            969..>1606
                     /locus_tag="VHN39_03820"
     CDS             969..>1606
                     /locus_tag="VHN39_03820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815496.1"
                     /translation="MALPSESVTLAGSGLVFVNGYGPGVDATFRSEAIAAENFLQSQF
                     TNPVTIDVTFDLRALGPSFTAHNEFDVTKVSYAQFTAALQAHATTADDQLAVAGLPAD
                     PSGGLGFTLPTPYAIMLGLAPQTNLDDLSVELNNDGPLTFADAVGALEHELSEGGFGR
                     LAGLGVQGGWQPEDLFRFTAAGQRDFSGGADGVPTFFGLDATHLTSLQFHNAV"
BASE COUNT          249 a          550 c          541 g          266 t
ORIGIN      
        1 gtagagcacc atggcgatca tcaggatgcg cttggcgccg aaccggtcgg ccatccagcc
       61 gctgatcggc aggaacaccg ccgaagccag caggtacatg gtgatggcca cgttgagcct
      121 gagcggctcg acgtgcagcg cgcgggccat ggcggggagc gcgttgttga tcgaggtggc
      181 gttcagcgtc tgcatcagca gggccgaacc gatgatcgcc gggatcaccc agcctcgcag
      241 ggtggcgtcg cggccctcgt tgaggatcgc cgcggcgtcg gcgccgcctt cgtcgaggac
      301 gtcgcccttc aggacctctt cggcgcgggt gctcatccgt cgaggctcac gagcttgagc
      361 aacggggcgg cggcctcggc caggcgttcg cgttcggcag gcgtgaggcg caccaggcgc
      421 gcggccagcc agtcgttgcg atggcgctgc agcgcgtcgt gcttgcgcag ccccgcggcc
      481 gtaaccgtca ggccctggcg gcgaccgtcc tcggcatcgt cggtgcgcgc cacccagccg
      541 gcggcagcca ggcgctttac gtggctggac atggtcgggc gcgaaatctg ctcgaaatcg
      601 gcgagctcgc tgacccctgc gccggggttc ttcttcaggt agcctaggat cacggcgtcc
      661 tgggcggaga gtccgacctt ctgcgcctcc tggcgcagtc tccgcgagac ccgcagcagc
      721 ggcgcgcgca gggcctcagc cagggcggag acgtcatcag tcttgattgc ggcggcggcc
      781 aaggaagtca cgcgaggtag ttaggttgtc taactatcta taggtagagc gggccccttt
      841 caagccgctc gtcgcgaaaa tcgaaccctc catatcaagg cgggccgcgc gcccaggcgt
      901 ttcgttgaca ggctccgacc ttccgcgctc actccgcgcg gacttccagt cgaggctggc
      961 tacggaccat ggcgctcccc agtgaaagtg taacgctcgc gggcagcggc ctcgttttcg
     1021 tcaacggcta tgggccgggc gtcgacgcga cgttccgcag cgaagccatc gccgcggaga
     1081 acttcctcca gagccagttc accaatcccg tcaccataga cgtcaccttc gaccttaggg
     1141 cgctcggccc tagcttcacg gcgcacaacg agttcgacgt gacgaaagtg agctacgcgc
     1201 agttcacggc cgccctgcag gcgcacgcca cgaccgccga cgaccagttg gcggtggcgg
     1261 gcctgccggc cgatccttcc ggaggtctcg gcttcaccct gcccacgccc tacgcgatca
     1321 tgctgggcct ggcgccgcag accaacctcg acgacctcag cgtcgagctc aacaacgacg
     1381 gccccctaac cttcgccgac gcggtgggcg cgctcgagca tgagctgtcg gaaggcggtt
     1441 tcggacgcct tgccgggctc ggggtgcagg ggggctggca gcccgaggac ctgttccgtt
     1501 tcacggccgc cggtcagcgc gacttcagcg gtggcgccga cggtgtgccg acctttttcg
     1561 ggctcgacgc cacccacctg acgtcgttgc aatttcacaa cgcggt
//
LOCUS       DATAJL010000201         2439 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104557,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000201 DATAJL010000000
VERSION     DATAJL010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104557"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VHN39_03825"
     CDS             <1..211
                     /locus_tag="VHN39_03825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2815497.1"
                     /translation="GDYGHAFQPHATAPGGPTPGYPPPADQGYVGPDHSLTAAAKYLN
                     DRAASIYAGTNEIQRNIIAKAVLGL"
     gene            complement(274..960)
                     /gene="rplA"
                     /locus_tag="VHN39_03830"
     CDS             complement(274..960)
                     /gene="rplA"
                     /locus_tag="VHN39_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEX2815498.1"
                     /translation="MATSKRIKAWTGDRTVSHPVEEAVKLVKANATAKFDESVEIAVN
                     LGVDPRHADQQVRGVVSLPSGTGRDVRVAVIAKDAKAAEATAAGADIVGAEDLVERIQ
                     GGFMDFDRVIATPDMMALVGRLGKVLGPRGLMPNPRVGTVTPNVAQAVKDAKGGSIEF
                     RTEKTGIIHAGIGKASFTEDQLLINVKALIDALNKAKPSGAKGIYIKKISLSSTMGPG
                     FKVDTVSAGA"
     gene            complement(964..1395)
                     /gene="rplK"
                     /locus_tag="VHN39_03835"
     CDS             complement(964..1395)
                     /gene="rplK"
                     /locus_tag="VHN39_03835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEX2815499.1"
                     /translation="MAKKILGYIKLQVPAGAATPSPPIGPALGQRGVNIMGFCKEFNA
                     RTEKEAKGTPLPTVITVYQDKSFTFVTKTPPASFYIKQAIGLKSGSKEPGRSVAGKIT
                     RTQLRDIATKKMKDLNANDVEAAAKIIEGSARSMGLEIVER"
     gene            complement(1609..>2439)
                     /locus_tag="VHN39_03840"
     CDS             complement(1609..>2439)
                     /locus_tag="VHN39_03840"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2815500.1"
                     /translation="AVQDQYEANPYPRWRRPGPGSMLTYVQGRALPPEPLVLVAGCGT
                     GKQAVQATLMISGARTLAVDLSRTSLAYAVRKTRELGLDQRITYAQADLMELHGEAQF
                     DMVQSAGVLHHMADPFEGARRICRLAKPGGLIALGLYSARARVGLGPARALAKAYTPQ
                     TVRALRQAIINLPDDDPVRRRIVASADFYSTSGCRDLLMHVQEHHLTIADLRRILDEN
                     GLTFLGFLQFEFKGIRDAYRARFPHDPAGLDLDAWDIFEAERPTTFARMYQFWAGKRA
                     "
BASE COUNT          377 a          827 c          813 g          422 t
ORIGIN      
        1 cggcgactac ggccacgcct tccagccgca cgccacggcg ccgggcgggc cgacgcccgg
       61 ttatccgccg cccgccgacc agggctacgt cggccccgac cacagcctga ccgcggccgc
      121 taaatatctg aacgaccggg ccgcctcgat ctacgccggc accaacgaga tccagcgcaa
      181 catcatcgcc aaggcggttc tggggctttg agccacgaaa aaggagcgcc gcgtcgccgc
      241 ggctcccctg atcgatgtcg atatggccgc ggcttaggcg ccggccgaga ccgtatccac
      301 cttgaagccc gggcccatcg tcgaggagag gctgatcttc ttgatgtaga tgcccttggc
      361 gccgctcggc ttggccttgt tcagcgcatc gatgagcgcc ttcacgttga tgagcagctg
      421 gtcctcggtg aagctcgcct tgccgatgcc ggcgtggatg atgccggtct tctcggtgcg
      481 gaactcgatc gaaccgccct tggcgtcctt cacggcctga gccacgttcg gcgtgaccgt
      541 gccgacccgc gggttcggca tcaggccgcg cgggcccagc accttaccca aacggccgac
      601 cagggccatc atgtcgggcg tcgcgatgac gcggtcgaag tccatgaagc cgccctggat
      661 gcgctccacc aggtcctcgg cgccgacgat gtcggccccg gcggcggtgg cttcggcagc
      721 cttggcgtcc ttggcgataa ccgccacgcg gacgtcgcgc cccgtgcccg atggcagcga
      781 gaccacgcca cggacctgct ggtcggcgtg acgcgggtcg actcccaggt tgacggcgat
      841 ttcgacggac tcgtcgaact tggcggtggc gttggccttc accagtttga cggcctcttc
      901 aaccgggtgg gagaccgtgc ggtcgccggt ccaggccttg atgcgcttgc tcgtcgccat
      961 gtcctagcgc tccacgatct caagacccat cgaacgggcg gagccctcga tgatcttggc
     1021 ggcggcctcg acgtcgttgg cgttgaggtc cttcattttc ttggtggcga tgtcgcgcag
     1081 ctgggtgcgg gtgatcttgc ccgccaccga acggcccggc tccttggagc ccgatttcag
     1141 gccgattgcc tgcttgatgt agaagctcgc cggcggggtc ttggtgacga aggtaaagct
     1201 cttgtcctga tagacggtga tcaccgtcgg caggggcgtc cccttggctt ccttctcggt
     1261 gcgggcgttg aattccttgc agaagcccat gatgttgact ccgcgctggc ccagcgccgg
     1321 cccgatgggc ggcgaaggcg tcgcggcgcc cgcgggcacc tgcagcttga tatagcccaa
     1381 gattttcttg gccatgcctg tctccaatgc ggcggctggc gaaagccgcc tatgtggccg
     1441 tggtgcgggc agcccctccc acggatttga attcgcagcg aaccgcgaag cgggcgcgtg
     1501 tagcagttga ccgggtcggc ggcaacctcc cctcccttaa tgcggagggc ggcgagcgcc
     1561 atcgagacgg gtgggactgt gtaggccaac gtgctgagtc agcactcgtc aggcccgctt
     1621 cccggcccag aactggtaca tccgcgcgaa ggtcgtcggt cgctcagcct caaaaatgtc
     1681 ccacgcgtcg aggtccaggc cggccggatc gtgcgggaac ctcgccctgt aggcgtcacg
     1741 aatccccttg aactcgaact ggaggaaacc caggaaggtc aggccgttct cgtccaggat
     1801 ccggcgcaaa tcggcgatgg tgaggtgatg ctcctgcacg tgcatgagca ggtcgcgaca
     1861 gccgctcgtc gaatagaaat ccgccgaggc gacgatgcgg cgccgcaccg gatcatcgtc
     1921 cggcaggttg atgatcgcct gacgcaaggc gcgcacggtc tgcggcgtgt aggccttggc
     1981 gagcgccctg gccggcccca gtcccacccg ggcgcgtgcg ctgtagaggc caagcgcgat
     2041 caggccaccg ggcttggcca ggcggcagat ccggcgcgcg ccctcgaacg ggtcggccat
     2101 gtggtgcagc accccggccg actggaccat gtcgaactga gcttccccat gcagttccat
     2161 gagatcggcc tgggcgtagg tgatgcgctg gtccagaccc agctcgcggg tcttgcgcac
     2221 cgcataggcc aggctggtgc ggctcaggtc cacggccagg gtccgggcgc ccgaaatcat
     2281 gagcgtcgcc tggaccgcct gcttccccgt gccgcatccg gcgaccagca ccagcggctc
     2341 cggcggcaag gcccggccct ggacatacgt cagcatcgag cccgggcctg gacgccgcca
     2401 ccgaggatac ggattggcct cgtactggtc ctgcaccgc
//
LOCUS       DATAJL010000202         2462 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42021,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000202 DATAJL010000000
VERSION     DATAJL010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42021"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..1932)
                     /locus_tag="VHN39_03845"
     CDS             complement(100..1932)
                     /locus_tag="VHN39_03845"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2815501.1"
                     /translation="MSIPAELAEIVGEIDFDPDALHAKYLAERDKRLREDGAGQYVEV
                     KAEYSHYVDDPYVDPGFTREPVTDEVEFAIIGGGFGGLLMGARLREAGFESIRMVENA
                     GDFGGTWYWNRYPGAMCDVESYVYLPLLEELGYMPKHKYSFAPEILEHSRNIARHYRL
                     YDDALLQTGVTELRWDEAGQHWIISTDRGDRFRARYVAMANGPLSRPKLPGIPGINDF
                     KGHTFHTSRWDYRYTGGDSSGGLTGLADKRVGIIGTGATAIQCIPHLGASAKELYVFQ
                     RTPSSVDVRNNAPTDPAWAASLTPGWQMRRRENFNILVSGGDADEDLVHDGWTDIFRN
                     LTGAAAKQASQTLGRRLTGSERGELMALADYRKMNQVRARVDAIVQDPATAAALKPWY
                     RQFCKRPCFHDEYLATYNRPNVTLVDTHGQGVERLTETGVVAGGVEYPVDCLIFATGF
                     EVGTSYTRRAGYDIIGRGGVTLSEHWANGLRTLHGLTTHGFPNCFFLGFTQTAITISV
                     PQALNEQANHVAHLVSQARARGRQVLEPTAEAEAAYVEEIRSLARVGERFYMECTPGY
                     YNSEGAAGNRTGFFSEMYGAGPLKFFEKLQAWRADGRLEGLDLR"
     gene            complement(2044..>2462)
                     /locus_tag="VHN39_03850"
     CDS             complement(2044..>2462)
                     /locus_tag="VHN39_03850"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815502.1"
                     /translation="LGGSFGKFCSLIGYSGTPDGCGSGSYSLALNFVAGSVYANGNPL
                     DFYSVISLSASANAGPPDLGYAPGTMTAFIDPQITFGPGINLNDYSLSVGGVGTALVG
                     APSNGVPEPAAWAMMLVGFGGIGAMMRRRRPRAALA"
BASE COUNT          379 a          805 c          867 g          411 t
ORIGIN      
        1 aactctgaga gtcgaagagg atccgagaaa taggcctctg tcgcttagtg gcgacggtgc
       61 gattgaaatc aattgcgcga aagtcgtcgt tcgccgcccc tagcgcagat cgagcccttc
      121 cagccgcccg tccgcgcgcc aggcctggag tttttcgaag aacttcagcg ggcccgcacc
      181 gtacatttcg gagaagaagc cggtgcggtt cccggcggcg ccctccgagt tgtaatagcc
      241 gggggtgcat tccatgtaga accgctcccc gacgcgggcg aggctgcgga tctcctccac
      301 ataggcggct tccgcctcgg ccgtgggttc cagcacctgg cgaccacgcg cccgcgcctg
      361 gctcaccaga tgcgccacgt ggttggcctg ttcgttcagc gcctgcggca cgctgatggt
      421 gatcgccgtc tgggtgaagc ccaggaagaa gcagttggga aagccatggg tggtcaggcc
      481 gtgcagggtc cgcaggccgt tcgcccaatg ctccgaaagg gtcacgccgc cgcggccgat
      541 gatgtcgtag ccggcgcggc gcgtgtagga ggtgccgacc tcgaagccgg tggcgaagat
      601 caggcaatcg acgggatact cgacgccgcc cgccaccacg ccggtctcgg tgagccgctc
      661 gacgccctgg ccgtgggtgt ccaccagcgt gacgttcgga cggttgtagg tcgccagata
      721 ctcgtcgtgg aaacacggcc gcttgcagaa ctggcgatac cagggcttca gcgccgccgc
      781 ggtcgccggg tcctggacga tggcgtccac gcgggcgcgg acctggttca tcttgcggta
      841 gtcggcgagc gccatgagct cgccgcgctc gctacccgtc agccggcggc cgagcgtctg
      901 cgacgcctgc ttggcggcgg cgcccgtgag gttgcggaag atgtcggtcc agccgtcgtg
      961 gaccaggtcc tcgtcggcgt cgcccccgct gaccaggatg ttgaagttct ctcgccgccg
     1021 catctgccag ccgggcgtga gcgacgcggc ccaggccggg tcggtcggcg cattgttgcg
     1081 cacgtcgacc gaggagggcg tgcgctggaa gacgtagagt tccttggcgc tcgcgcccag
     1141 gtgcgggatg cattggatgg cggtggcgcc ggtgccgatg atgccgaccc gcttgtccgc
     1201 aaggcccgtg aggccgcccg aggagtcccc gccggtgtag cggtagtccc agcggctggt
     1261 gtggaaggtg tggcccttga agtcgttgat gccgggaatg ccgggcagtt tcggccggct
     1321 cagcggaccg ttggccatgg ccacatagcg cgcgcggaac cggtcgccgc gatcggtcga
     1381 gatgatccag tgttggcccg cctcgtccca gcgcagctcc gtgacgccgg tctgcagcag
     1441 ggcgtcgtca tagagccggt agtggcgcgc gatgttgcgg ctgtgctcga ggatctcggg
     1501 cgcgaaggag tatttgtgct tcggcatgta gccgagctct tccagcagcg gcaggtagac
     1561 gtagctctcc acgtcgcaca tggcgccggg atagcggttc cagtaccagg tgccgccgaa
     1621 gtcgccggcg ttctccacca tgcggatgct ctcgaacccg gcctcgcgca ggcgcgcacc
     1681 catcaggagg ccgccgaaac cgccgccgat gatggcgaac tccacctcgt cggtgaccgg
     1741 ctcgcgggtg aagcccgggt cgacgtaggg gtcgtcgacg tagtgcgaat attccgcctt
     1801 gacctcgacg tactgtcccg cgccgtcctc gcgcaggcgc ttgtcacgct cggccaggta
     1861 cttcgcgtgc agggcgtcgg gatcgaaatc gatctcgccg acgatctcgg ccagttccgc
     1921 tgggatgctc atggccgcca tcttggggtg aaaaggaccc catacgtcaa caggggccgc
     1981 gccccggcgg gccttagccc cctctcccca ccgcaaagcc gacggggaga ggaggggtgt
     2041 tcctcaggcg agcgcggccc gcgggcggcg gcggcgcatc atcgcgccga tcccgccgaa
     2101 gcccaccagc atcatggccc aggctgccgg ttccggcacg ccgttggatg gcgcgccgac
     2161 cagcgccgtg ccgactccgc ccaccgacag gctgtagtca ttcaggttga tccccggccc
     2221 gaaggtgatc tgggggtcga tgaaggcggt catggtccca ggcgcgtagc cgagatcggg
     2281 cgggccggcg ttggcggagg ccgagagcga gatcacgctg tagaagtcca gcggatttcc
     2341 gttggcgtac actgagccgg cgacgaagtt gagcgccagg ctgtagctcc cgcttccgca
     2401 gccgtccggc gtgccggagt aaccgatcag cgagcagaat ttaccgaagc tgccccccag
     2461 gc
//
LOCUS       DATAJL010000203         1898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42030,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000203 DATAJL010000000
VERSION     DATAJL010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1898
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42030"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(182..1435)
                     /locus_tag="VHN39_03855"
     CDS             complement(182..1435)
                     /locus_tag="VHN39_03855"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815503.1"
                     /translation="MPHVFSRYQKFVIAVLAFLQFTIILDFMIIGPLGALLLRDMHIT
                     TRQFGLVVSAYAFSAGVSGLLAAGFADKFDRKKLLLFFYAGFLLGTLLCGVAGSYGFL
                     LGARIVTGVFGGVIGSVSMAIIADLFPLAVRGRVMGIVQTAFAASQVMGLPLGLILSN
                     RWGWHAPFMMIFVVAAAVGLVIALRLRPIVEHLKVPSTKDPVAHLLATVRQGRYLRTF
                     AATMMLATGGFMLMPFGSTFTVHNLGIPFEKIKWIYLTTGVVTLAAGPLLGKLSDAIG
                     KYRVFTIGSLAAGAIVCFYCNLGVTPIGVVQVVSALLFVAITARIISASALISAVPDM
                     QDRGAFMSINAAMQQFSGGVAAMLSGLIVVQEPGGHLLHYDRLGYVVTGAMTLVIVLM
                     YPINQAVMRKAAAAAQPEAVAVAAG"
     gene            1543..1665
                     /locus_tag="VHN39_03860"
     CDS             1543..1665
                     /locus_tag="VHN39_03860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815504.1"
                     /translation="MPVVKLPSKVLPWVVIVLCIAALAGLVGIMTDNHIWPFNH"
     gene            complement(1698..>1898)
                     /locus_tag="VHN39_03865"
     CDS             complement(1698..>1898)
                     /locus_tag="VHN39_03865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815505.1"
                     /translation="LTRDNYAGATAFVALQEQNLAVPRPGRLYKLFRASHPPIGERVD
                     FINSYRPWERGELDRYRARVRR"
BASE COUNT          357 a          640 c          634 g          267 t
ORIGIN      
        1 cgctggctag ccggccagca cacccgccgc ctcggccgct cgtgcaccgc cgccttggcc
       61 ctctgtatgg cctcgacggc ggtcttcacg ctcttacttg cagacggtgg tcaggttcgc
      121 ccagcggcga tcgttgaccg atcgccggcc gatcgccctg ccccaaaatg aatagccagg
      181 ctcagcccgc ggcgaccgcg accgcctccg gctgcgcggc ggcggccgcc ttgcgcatga
      241 ccgcctggtt gatcgggtac atgagaacga tcaccagggt catcgcgccc gtcacgacgt
      301 agccgagccg gtcgtagtgc agcaggtgcc cgcccggctc ctgcacgacg atgaggcccg
      361 acagcatcgc ggcgacgccg cccgagaact gctgcatggc cgcgttgatc gacatgaagg
      421 caccgcggtc ctgcatgtcg ggtaccgccg aaatgagcgc gctggccgag atgatccgcg
      481 cggtgatggc cacgaacaga agcgcgctca ccacctgcac cacgccgatc ggcgtgacgc
      541 ccaggttgca gtagaagcac acgatcgctc cagcggccag cgagccgatc gtgaagactc
      601 tgtacttgcc aatggcgtcg ctcagcttcc ccaggagcgg ccccgcggca agcgtgacca
      661 cgccggtggt cagatagatc cacttgatct tctcgaacgg gattccgagg ttgtgaaccg
      721 tgaacgtgct gccgaatggc atcaacatga agccgccggt cgccagcatc atcgtcgccg
      781 cgaacgtgcg cagatagcgc ccctgccgca ccgtcgccaa gaggtgcgcc accgggtcct
      841 tggtcgacgg caccttcagg tgctcgacga tcggccggag gcgcagcgcg atcaccagcc
      901 cgacggcggc ggcaacgacg aagatcatca tgaacggggc gtgccaaccc cagcggttcg
      961 ataggatcag accgagcggc aagcccatca cctggctggc cgcgaaggcc gtctggacga
     1021 tccccatgac ccgcccgcgc accgcgagcg gaaacagatc ggcgatgatg gccatggaga
     1081 cagacccgat gacgccgccg aagacgcctg tcacgatacg ggcgccgagc aggaagccgt
     1141 agctgccggc cacgccgcag agcaacgtgc cgagcaagaa gcccgcgtag aagaacagca
     1201 gcagcttctt gcggtcgaac ttgtcggcga aaccggccgc cagcaggccc gagacacccg
     1261 cgctgaaggc gtacgccgag acgaccagcc cgaactggcg ggtggtgatg tgcatgtccc
     1321 gcaagaggag ggccccgagc ggcccgatga tcatgaagtc gaggatgatc gtgaactgca
     1381 ggaaggccag aacggcgatg acaaacttct gatagcggct aaagacgtgc ggcatggacg
     1441 ggggcgaagg gtagacggcg gttggcctgg gggccagccc cccgaacgtc acgacgggat
     1501 atgcccgggc gaccagggcc aaggacgtgg tagacgtccg gaatgccggt cgtcaagctg
     1561 ccctcgaagg tgctcccgtg ggtggtgatt gtgctctgca tcgcggccct cgccgggctg
     1621 gtcggcatca tgaccgacaa ccacatctgg ccgttcaacc actgaggggt cggcccaccg
     1681 agagcttcgg cggagggcta ccgccgaacc cgagcccggt accggtcgag ctcgcccctc
     1741 tcccacggcc ggtagctgtt gatgaagtcg acgcgctcgc cgatcggcgg gtggctggcg
     1801 cgaaacagct tgtagaggcg ccccggacgc ggcaccgcca ggttctgctc ctgcagcgcc
     1861 acgaacgcgg tcgctccggc gtagttgtcg cgggtcag
//
LOCUS       DATAJL010000204         1965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78925,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000204 DATAJL010000000
VERSION     DATAJL010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1965
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78925"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..855
                     /locus_tag="VHN39_03870"
     CDS             <1..855
                     /locus_tag="VHN39_03870"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX2815506.1"
                     /translation="NFAIPLARGRYFNDADNQTAAPVAIVNQAFVKRFFKSDEDPIDQ
                     HFGMNQPENATTFRIVGVVRDAKFAGWGLSRPARPMLFVPLAQAVAYPPGNSLRQVEL
                     RSHFIHGLMLTTSQAPGALEPVLTRLLAGIDPNLTINAVRAMREQVALRFDQERAVAS
                     LAGLFGIVALLLAAVGLYGVTAYAVAQRKNEIGIRMALGADRASVVALVLRGTSARVL
                     VGLLLGVPLAIGAGRLISSELYGVVSWDPVALTVAAAALAVSAFFAAIIPARRAASVS
                     PLDALKVE"
     gene            1132..1884
                     /locus_tag="VHN39_03875"
     CDS             1132..1884
                     /locus_tag="VHN39_03875"
                     /inference="COORDINATES: protein motif:HMM:NF014635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF169 domain-containing protein"
                     /protein_id="HEX2815507.1"
                     /translation="MSNSAIAETLTQSLDLTQPPIAVCLLDELPRGVELWSGAAPAGC
                     RFWQEASTRVFATAPADHANCAIGQYTHNLAMTPVSEKDLGDALRIFDSLSYVREQDI
                     PSIPVLQSRPKYVLYGPLALVPAAPDVVLLFVKAGQTLILSEASWQVEGGMPPAMGRP
                     ACAVVAQAANSARSALSLGCCGARAYLDVLTDDVALYALPGRGLEALAERIAALASAN
                     EILTKFHQIRRSDIESGKSPSVMDSLATLQGV"
BASE COUNT          317 a          702 c          597 g          349 t
ORIGIN      
        1 aacttcgcta tcccgctcgc ccgcggccgt tacttcaacg acgccgataa ccagaccgca
       61 gcacccgtcg cgatcgtgaa ccaggccttc gtgaagcgct tcttcaaaag cgacgaagac
      121 ccgatcgatc agcacttcgg catgaaccag ccggaaaacg ccaccacctt ccgcattgtc
      181 ggcgtcgtgc gcgatgccaa gttcgccggc tggggcctga gccgccccgc ccgcccgatg
      241 ctcttcgtcc cgctcgccca ggcggtcgcg tacccgcccg gcaactcgct gcgtcaagtc
      301 gaactgcgct cccatttcat ccacggcctc atgctcacta ccagccaggc tcccggcgcg
      361 ctcgaacctg ttttgaccag gctcctcgcc ggtatcgacc cgaacctgac catcaacgcc
      421 gtccgcgcca tgcgcgagca ggtcgccctc cgcttcgacc aggagcgcgc cgtcgccagt
      481 ctcgccggcc tcttcggcat cgtcgccctc ctgctcgccg ccgttggact ctacggcgtc
      541 accgcctatg ccgtcgcgca gcgcaagaac gaaatcggca tccgtatggc gctaggcgcc
      601 gaccgcgcca gtgtcgtcgc cctcgtcctg cgcggcacct ccgcccgcgt cctcgtcgga
      661 ctcctgctcg gcgtcccgct cgccatcggc gccggccgcc tcatctcctc cgaactatac
      721 ggagtcgtca gttgggaccc cgtcgcgctc accgtcgccg ccgcggccct cgccgtcagc
      781 gccttcttcg ccgccatcat ccccgcccgc cgcgccgcgt cggtctcccc gttggacgcc
      841 ctgaaggtcg agtagcccac cgtctcggta tcattttcac tgcgttgctg taccttgcaa
      901 cgatcttgtg gggccgccaa tccacatccg gaagcagtcg ccatgccgac ttcccgttac
      961 taatcgagca ggaggtccgg ccggccaact tccagaagcc cgacaacccg cctaggcagc
     1021 cacgatccgg tgacgggacc gtccagtaac gagttcacag gcgcatttgc gcggtaggcc
     1081 cgaagggata ggacgaacga atcgacccac ctgtgagcta gactgtgagg catgtccaat
     1141 tccgcaatcg ccgaaacctt gacgcaatca ctcgatctga ctcagcctcc aatcgccgtc
     1201 tgcctgctcg acgaactgcc tcgcggggtc gaactgtgga gcggcgcggc gccagctgga
     1261 tgccggttct ggcaggaagc ctccacgcgc gtcttcgcca ccgcgccggc cgaccacgcc
     1321 aattgcgcga tcgggcagta tacgcacaat ctggcgatga cgccggtatc cgagaaggac
     1381 ctgggtgatg cgcttcggat cttcgattcg ctttcgtacg tgcgggagca ggacatcccg
     1441 tcgatcccgg tgctgcagtc gcggccgaag tacgtcctgt acgggccatt ggcgttggtg
     1501 ccggccgcgc cggacgtcgt gctgcttttc gtgaaagcgg gccagaccct cattctgtcc
     1561 gaggcttcgt ggcaggtgga gggcgggatg ccgccggcga tgggccggcc cgcatgcgcg
     1621 gtggtggcgc aggcggcgaa ctcggcgcgt tcggcgctga gcctggggtg ctgcggtgcg
     1681 cgggcgtacc tggacgtgct cacggacgac gtggcgctgt acgcgctgcc gggtcgcggt
     1741 ctggaggcgc tggcggagcg gatcgcggca ctggcgtcgg cgaatgagat cctgacgaag
     1801 tttcaccaga tccgtcggag cgacatcgaa tccggtaagt cgccgagcgt gatggactcg
     1861 cttgcaactc tgcagggcgt ctgagcatac aagaagcgct ctggccgagt aacgcgccac
     1921 acggacaaag atttgcactg cggctcgcat cgatattaga cgtcg
//
LOCUS       DATAJL010000205         2783 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54632,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000205 DATAJL010000000
VERSION     DATAJL010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2783
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54632"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..896
                     /locus_tag="VHN39_03880"
     CDS             141..896
                     /locus_tag="VHN39_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815508.1"
                     /translation="MSGAREPAAVLDRFPKTRPALPPRLEAIYTQQYLENRGGKTPAA
                     SLAQRLETWLHHQVAADVKAAATSGETLELGAGTLNQLAYEPAGPAYDIVEPFAELFS
                     DSPLKGGVRTTYRDIREVPAGRAYARITSVASLEHICDLPFVLARAARLLAPGGTLRA
                     AIPSEGGFLWTLGWMATTGLEFRLRHGLDYGLLMAHEHVNDAREIETLVRALFEEVEV
                     KSFGLGRQLSLYRFLAARKPRLDVAAGWEARFA"
     gene            complement(893..2284)
                     /locus_tag="VHN39_03885"
     CDS             complement(893..2284)
                     /locus_tag="VHN39_03885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815509.1"
                     /translation="MTGLRLQINPRSALRAVLAIGLLVMLGANLPGHLSYDSVAQLYE
                     GHFHLRETWGPALYAWILGVFDAVVPGTALYVTVSGLILFASLASLSDLRPRTSWWAV
                     PVAALAVLTPQMLVYQAIVWKDIAFANTAIAGLVCLAHAARIWPRTGRRWLFLTAALL
                     LLAVASQVRQNGIVVAFLGAIALGWIAGAAQVSQKGRWRKGLAYGVGGFLAVAMAGQV
                     MTVLSVPPHGPPEPGVKTGLRIVQNYDLIGAVALDPSYRLPIMGAADAVDTAMILERS
                     PLEYSGRRVDFIDRDQALSDALWKVPEAASGKQWFDLIFKHPALYLKVRWEDFRWLVA
                     PPVIDWCLPVYVGVDAPADKMEPLKLVHRYVQSDIELSNYSSWFLDTPVDSHLFYGAI
                     SLVLAGLFLWRRQPADIALAALQLSGVGFMSSFFIISIACDYRYLYFTDVAALAGLIY
                     AAVDPPLPWRKAP"
     gene            2401..>2783
                     /locus_tag="VHN39_03890"
     CDS             2401..>2783
                     /locus_tag="VHN39_03890"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEX2815510.1"
                     /translation="MTVVYVLAHFDDEYCALPLIRRAVAEGREHLFIHVVDYRNPKMG
                     ARRRRETVAFLAAQGVPATSQIHLGAGTGWWDGELHRHAGPAYEALKAAVTGPVERVV
                     VPAWEGGHPDHDICAALGAKLAAEHG"
BASE COUNT          469 a          963 c          980 g          371 t
ORIGIN      
        1 cgctcaaccg cccgcccccg ttcgcggccc acaggtaaaa ggctgcccgg cggttgggaa
       61 gcggcaaaag gcttgggagg cgacgcggcg gcttgctaag gattcggcca agagaaacaa
      121 atacggggag gagccttcgg atgagcggtg ctcgcgaacc tgcggccgtg ctcgaccgat
      181 tccccaagac ccgcccggcg ctgccgccaa ggctggaggc gatctatacc cagcagtacc
      241 tggagaaccg cggcggtaag acaccggcgg cctcgctggc ccagcggctg gagacctggc
      301 tgcatcacca ggtcgccgca gacgtgaagg cggccgccac ctccggcgag accctcgaac
      361 tgggcgcggg caccctcaac cagctcgcct atgagccggc gggcccggcc tacgacatcg
      421 tcgagccctt cgccgagctc ttcagcgatt cgccgctgaa gggcggcgtg cggaccacct
      481 accgcgacat ccgcgaggtt cccgccggcc gggcctacgc gcgaatcacc agtgtcgcgt
      541 ccctggagca catctgcgac ctgcccttcg tcctggcgcg cgccgcgcgc ctgctggcgc
      601 ctggcgggac gctgcgcgcg gcgatcccca gcgagggcgg cttcctgtgg acgctcggct
      661 ggatggccac cacaggcctg gagtttcgcc tgcgccacgg cctcgactac ggcctgctga
      721 tggcccacga gcacgtcaac gacgcccggg agatcgagac cctggtccgg gccctgttcg
      781 aggaggtcga ggtcaagagc ttcggcctcg gccggcagct gtcgctctat cgcttcctgg
      841 ccgcgcgcaa gccccggctg gacgtcgccg ccggctggga agcccgcttc gcctagggcg
      901 ccttgcgcca aggtagaggc ggatcgaccg ccgcgtagat cagccccgcc agcgccgcca
      961 cgtcggtgaa gtagaggtag cggtagtcgc aggcgatcga gatgatgaag aagctcgaca
     1021 tgaagccgac acccgagagc tgcagggcgg ccaaggcgat gtcggccggc tgccggcgcc
     1081 agaggaagag gcccgccagc accagcgaga tcgcgccata gaacaggtgc gaatcgaccg
     1141 gtgtgtcgag aaaccagctc gaatagttgc tgagctcgat gtcggactgc acgtagcggt
     1201 ggacgagctt cagcggctcc atcttgtcgg ccggcgcgtc gacgccgacg tagaccggca
     1261 ggcaccagtc gatcaccggc ggggccacca gccagcggaa gtcctcccag cgcaccttca
     1321 gatagagcgc cgggtgcttg aagatcagat cgaaccactg cttgccggaa gcggcttccg
     1381 ggaccttcca gagcgcgtcg ctcagcgcct ggtcgcggtc gatgaagtcc acccggcggc
     1441 cggaatattc cagcggcgat cgctccagga tcatcgcggt gtcgacggcg tcggcggcgc
     1501 ccatgatcgg gagccggtag ctggggtcga gcgccacggc gccaatcagg tcgtagttct
     1561 ggacgatccg caggcccgtc ttgacgcctg gctcgggtgg cccatgcggc gggaccgaga
     1621 gcacggtcat gacctggccc gccatggcga cggccaggaa gccgccgacg ccgtaggcca
     1681 ggcccttgcg ccaacggccc ttttgcgaga cctgggctgc cccggcgatc cagcccagag
     1741 cgatggcgcc caggaaggcc acgacgatgc cgttctggcg gacctggctg gccaccgcca
     1801 gcagcagcag ggcggcggta aggaacagcc agcgccggcc agtcctcggc cagatccgcg
     1861 cggcgtgagc gaggcagacg aggccggcga tcgcggtgtt ggcgaaggcg atgtccttcc
     1921 agacaatcgc ttgatagacc agcatctgcg gggtgagcac ggccagggcc gcgacgggaa
     1981 ccgcccacca gctcgtccgg ggccgcaggt ccgagagcga ggccaggctc gcgaagagta
     2041 tgaggccgct caccgtgacg tagagcgccg tccccggcac caccgcgtcg aacaccccca
     2101 ggatccaggc gtagagcgcc gggccccagg tctcgcgcag gtggaaatgg ccctcgtaca
     2161 gctgagcgac ggagtcgtag gaaaggtgcc cgggcaggtt ggcgcccagc atgaccagga
     2221 gcccgatcgc cagcaccgcg cgcaacgccg agcgcggatt gatctgcagt cgaaggcccg
     2281 tcatccgtcc gtcaaaaccc ccagcgcaca ggagtttggt acggcgcttg gccatcgatg
     2341 agaagcgcga atgcgcgtgc gccttggcgg gggccggcaa tcgtggtgag ttgcccgcgc
     2401 atgaccgtcg tctatgtcct cgcccacttc gacgacgaat actgcgccct gcccttgatc
     2461 cggcgcgcgg tcgcggaggg ccgcgagcac ctgttcatcc acgtggtcga ctaccgcaac
     2521 cccaagatgg gcgcgcggcg gcgccgcgag acggtggcct tcctggccgc ccagggcgtt
     2581 ccggcgacct cgcagatcca cctcggcgcg gggaccggct ggtgggacgg cgagctgcac
     2641 cgccatgcgg ggccggccta cgaggccctg aaggccgccg tgaccggccc ggtcgagcgg
     2701 gtcgtcgtgc cggcctggga gggcggccac cccgaccacg acatctgcgc ggccctgggc
     2761 gccaagctgg cggccgagca cgg
//
LOCUS       DATAJL010000206         4000 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_28921,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000206 DATAJL010000000
VERSION     DATAJL010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4000
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_28921"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1832
                     /locus_tag="VHN39_03895"
     CDS             <1..1832
                     /locus_tag="VHN39_03895"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2815511.1"
                     /translation="GFWLWSGRAGPPGPSKVVVLAEFENLTGEPLFDRTFAEATRIDL
                     FPSPYLTVLAEPKVQNTLALMTRSKDERLVPAVAQEVCARNNGMAAVRGSVAKVGTRY
                     LLTVTAADCASGDTLDAEKAEVSGHDGLLPALDAMVKHLRRRLGESAGSVRRFSVPLV
                     RVRTASLDAVKSYSDAQFQFNHGRRIEAIPLFQRAIALDPNFATAYGALSVVYANLRE
                     NDLAAANATKAYALRDSVDERERFFIAYRYNTFVTQDVPEGLRLLRGWTQSYPADGPA
                     WANLSNKENWVGQYALAIADGRRALSLEPDVETAYVVLARAALHAGQWDLAQRTCAQA
                     IAHGVDGDDLHGVLFQLAIARGDAAGALRQMQWAEGKPGERSMLIEAGQAAFRGGQVR
                     RGLDLFQRALDLGKGLGLSNFMAAPNAQLLQDLGRTDLARQSLAQVPDGFDSADYRFT
                     LAEIGDTARAEALLRHDLAKSPTDTLLTQVFAPEQRAAAALRQGRPVEALKALRSTLP
                     YDLRTYDVPYLRGRAYLAEGDGAQAAAEFRKILENPGVEPVSEHYPLAELGLARAYRI
                     QRDVAASRGAYQRFFIAWKDADPDQPLLRAAEAEYVKLPPITR"
     gene            1883..2144
                     /locus_tag="VHN39_03900"
                     /pseudo
     CDS             1883..2144
                     /locus_tag="VHN39_03900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007674967.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing N-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2233..2874)
                     /locus_tag="VHN39_03905"
     CDS             complement(2233..2874)
                     /locus_tag="VHN39_03905"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815512.1"
                     /translation="MKAKFRWLAIALASVAASGASATTYLYHYTGQDLTNVTSSCCGA
                     DTPFTTSDFIDFRFTSTGVLAPNQDDVGFAAPITAWSLSVGPLHYSNTDPGSVLYSIN
                     FSTDGLGRITDYQFTTQTDVGAPNLLPAEYPPTIYEEEVFSFNIPPIGYGPEDGIYIP
                     SIFQDSAYASNVGSPGSWTISAAPEPARWILMLIGFGGLGAALRTRRRSAAVA"
     gene            complement(3013..>4000)
                     /locus_tag="VHN39_03910"
     CDS             complement(3013..>4000)
                     /locus_tag="VHN39_03910"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018082692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2815513.1"
                     /translation="FRVAADGCQVAAFAAHSTERLGLLLAHRPGFVAPTLAARQLASL
                     DQFSDGRLAVHVITGGSDADQARDGDFLEKAERYARTDDYLDVVKKAWTSPEPFDHDG
                     PYYRVKGGTSAVRCLQDPHIPVYFGGSSDEAIEVAGKHADVYALWGESLSAVAETIGR
                     VRASAARHGRADRTRFSLSLRPILGRTEDEAWARAQLILEQAKALRATGARIAPTSAG
                     PGGAGPRPNNPQNAGSQRLLAEAAKGAVVDKRLWTELAALTGAQGNSTSLVGTPEQVC
                     DAMLDYWDLGVTTFLIRGFDPLEDALEYGRDLIPLVREATAARATPLALGVA"
BASE COUNT          685 a         1333 c         1366 g          616 t
ORIGIN      
        1 tgggcttctg gctctggtcc gggcgcgccg ggccgccggg gccgtcgaag gtggtcgttc
       61 tcgccgagtt cgagaacctg acgggcgagc cactgttcga ccggaccttc gccgaagcga
      121 cccggatcga cctctttcca tcgccctatc tgacggtcct ggccgagccg aaggtccaga
      181 acaccctggc gttgatgacc cggtccaagg acgaacggct ggtcccagcg gtggcgcagg
      241 aggtctgcgc ccgcaacaac ggcatggcgg cggtgcgcgg cagcgtcgcc aaggtcggga
      301 cccggtacct gctgaccgtg accgccgccg attgcgccag cggagacacg ctcgacgccg
      361 agaaggcgga ggtctccggt catgacggtc tgctgccggc gctcgacgcc atggtcaaac
      421 acctgcggcg ccggctaggg gaatcggcgg gctcggtacg gcgcttcagc gtgcccctgg
      481 tccgcgtccg caccgcctcg ctggatgcgg tgaagagcta ttcggatgcc cagttccagt
      541 tcaatcacgg cagacggatc gaggcgatcc cgctgttcca gcgagccatc gcgctcgatc
      601 ccaacttcgc gaccgcctac ggcgcgctct cggtcgtcta cgccaacctg agggagaacg
      661 acctggcggc ggccaacgcg accaaggcct atgccctgag agacagcgtc gacgagcgcg
      721 agcggttctt catcgcctat cgctacaaca ccttcgtcac ccaggatgtg ccggagggcc
      781 tgaggctcct gcgcggctgg acgcagtcct atccagcgga tggtccagcc tgggccaacc
      841 tctccaacaa ggaaaactgg gtcgggcagt atgcgctcgc cattgccgat ggccgccgcg
      901 cgctcagcct ggagccggac gtcgagaccg cctatgtggt cctggcccgc gccgccctgc
      961 acgccggcca atgggacctg gcgcagcgga cctgcgcgca agctatcgcc cacggggtcg
     1021 acggagacga cctgcacggc gtcctcttcc agctcgcgat cgcccgagga gacgccgccg
     1081 gcgccctgcg ccagatgcag tgggcggagg gaaagcccgg cgaacgctcg atgctgatag
     1141 aggcggggca agccgccttc cgcggcggac aggtgcgccg cggcctcgac ctgttccagc
     1201 gcgcgctgga cctcggcaag ggcctggggc tcagcaattt catggccgcg cccaacgccc
     1261 agttgctgca ggacctgggc cgcaccgacc tggcccgcca gagcctcgct caggtcccgg
     1321 acggcttcga ctccgcggac taccgcttca ccctggcgga gatcggcgac accgcccgcg
     1381 ccgaggccct gttgcgccac gacctcgcaa agtcccccac cgacaccttg ctgacccagg
     1441 tcttcgcgcc ggagcagcgc gcggcggcgg cattgcggca ggggcggccc gtcgaagcgc
     1501 tgaaagccct gcggtcaacc ctgccgtacg acctgcgcac ctacgacgtt ccctatctgc
     1561 gtggtcgggc ttatctggcg gaaggcgacg gcgcgcaggc cgcggcggag ttccgaaaga
     1621 tcctggaaaa ccccggcgtg gagccggtct ccgagcacta tccgctggcc gaactcggct
     1681 tggcgcgggc ctataggata cagcgcgacg tcgcagctag ccgaggcgcc tatcagcggt
     1741 tcttcatcgc gtggaaagac gccgatccgg accagccgct gctgcgcgcc gctgaggcgg
     1801 aatacgtcaa gctgccgcca atcacccgct gaggcttaca gagctccatt ccgtccgcgg
     1861 gggcgagagg ccaggcggga tgcgttagaa caatcgggcg gaaaactcac atctgccgat
     1921 ccgaccgcga gcgaaagcgg caaaagttca aatcccgacc cccggcccag aggttcctcg
     1981 ccacccacgc cgccgtcgac aacgtcttca atctccagcc acacctgatc cgacgaccca
     2041 ccctcaccaa ttccgggcgc aggctcatcg gacgggggcg gcggcgaccg ccgctgcatg
     2101 atcacagcgc tggggcaggg tctttagcgg ttccgcggag ttaagctgac agaaccggtc
     2161 gaaactcagt ttgaggtggc gcgggacgcc atcaacaagg tctggccggt cgtccgagac
     2221 tccgcggacg gtttaggcga cagcggccga tctgcgccgg gtgcgcaggg ccgcaccgag
     2281 gccaccgaag ccgatcagca tcagaatcca gcgcgccggc tctggcgcag cggagatcgt
     2341 ccagcttccc gggctgccga cattggaggc gtaggcgctg tcctggaaga tcgacggaat
     2401 atagatgccg tcctccggcc cgtagccgat cgggggaatg ttgaagctga acacctcctc
     2461 ctcatagatc gtcggcgggt attcggcggg tagcaggttc ggcgcgccca cgtccgtctg
     2521 agttgtgaac tggtagtcgg taatccggcc gagcccgtca gtcgagaagt tgatgctgta
     2581 gagcacactg ccggggtcgg tgttcgaata gtgcagcggg ccgaccgaga gcgaccaggc
     2641 ggtgatcggc gcggcgaacc ccacgtcgtc ctggttcgga gccaggacgc cggtcgaggt
     2701 gaaccggaag tcgatgaagt cggacgtcgt gaacggcgtg tcggcgccgc agcatgagct
     2761 ggtcacgttc gtcaggtcct ggcccgtata gtgatagagg taggtcgtcg ccgatgcgcc
     2821 cgacgcggcc acactcgcca gcgcgatcgc cagccaacgg aatttcgcct tcatgtccaa
     2881 tctccactct tggtggttgc cgatagaagg agagaaggcg cctcgcgacc ggcgaaagtc
     2941 gtcaagaccg ggatcaaaag ttctcaaaat ggttcggcag tcagaagccg ccggtcgcac
     3001 agccgcatcc cctcacgcta cccccagagc cagcggcgtt gctcttgccg cggtggcctc
     3061 ccgcaccagc ggtatcaggt cgcggccgta ttcaagggcg tcctccaacg ggtcgaagcc
     3121 acgtatcagg aaggtggtga ccccgaggtc ccaataatcg agcatggcgt cgcagacctg
     3181 ctctggcgtt cccaccagag aggtcgagtt gccttgagcg cccgtcaggg cggcgagctc
     3241 ggtccacagg cgcttgtcga cgacggcgcc cttggcggcc tcggcgagca accgctgcga
     3301 tccggcattc tgcgggttgt tcggacgagg gcccgcgccg ccaggaccgg ccgatgtcgg
     3361 ggcgatgcgg gcgccagtgg cccgcaaggc cttggcctgc tccaggatca gctgcgcgcg
     3421 cgcccaagct tcgtcctccg tccggccgag gatggggcgc aaggagaggc tgaagcgggt
     3481 gcggtcggca cggccgtggc gagcggctga ggcgcggacg cgccctatgg tctctgcgac
     3541 agcggagagg ctctctcccc aaagcgcgta gacatcggca tgtttgccgg cgacttcgat
     3601 ggcctcgtcc gacgaacccc cgaagtagac ggggatgtgg gggtcctgca ggcaccgcac
     3661 cgcggaggtc ccgcccttga cgcgatagta ggggccgtcg tgatcgaagg gttcggggct
     3721 ggtccacgcc ttcttgacca cgtcgaggta gtcatcggtg cgggcgtaac gctcggcctt
     3781 ctcgaggaag tcgccgtcgc gggcctggtc ggcgtccgag cctccggtga tgacgtgaac
     3841 cgccaggcgt ccgtctgaga actggtcgag ggaggcgagt tgccgagcgg cgagcgtcgg
     3901 cgcgacgaat ccggggcgat gagcgagcaa tagaccgagg cgctcggttg agtgcgcggc
     3961 aaaagcggcg acctgacaac cgtcggcggc gactctaaag
//
LOCUS       DATAJL010000207         2073 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_16143,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000207 DATAJL010000000
VERSION     DATAJL010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16143"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1063
                     /locus_tag="VHN39_03915"
     CDS             <1..1063
                     /locus_tag="VHN39_03915"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004451 - isocitrate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HEX2815514.1"
                     /translation="VPVIADIDAGFGNAEATYLLAKKMIQAGACALQIENQVSDEKQC
                     GHQDGKVTVPHEDFIAKVRACRYAFLELGVDNGIVVTRTDSLGAGLTKQIAVSHTPGD
                     IGDQYNSFLDCEEISPAEMKNGDVVLNRGGKLLRPKRLPSNLFQFRAGTGEDRCVLDS
                     ITSLQNGADLLWIETEKPHVEQIAGMMDRIRTVVPNAKLAYNNSPSFNWTLNFRQQVY
                     DAWKTAGKDVSAYDRAGLMSVDYDATALAIEADEKIRTFQADAAKRSGIFHHLITLPT
                     YHTTALSTDNLAKEYFGSQGMLGYVLNVQRQEIRQGIACVKHQNMSGSDLGDDHKEYF
                     AGEAALKAGGAHNTMNQFA"
     gene            1193..>2073
                     /locus_tag="VHN39_03920"
     CDS             1193..>2073
                     /locus_tag="VHN39_03920"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270511.1"
                     /note="catalyzes the formation of malate from glyoxylate
                     and acetyl-CoA; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HEX2815515.1"
                     /translation="MDITSRLSVDDILHAFVEDELLPGTGIGSAAFWASLEAILTDFT
                     PRNATLLARRDELQGKIDGWWRARRGQAFDVTAETTFLREIGYLLPEPPAFQIATENV
                     DPEIARLAGPQLVVPVSNGRFALNAANARWGSLYDALYGTDALEPPTGGKGYDPLRGA
                     KVVAFARQFLDRAAPLSTGSHADAVGYFVGQGGLIVRLRGGQESVLADPDQFVGWRGE
                     AGTPQAALLVHNSLHLEIQIDRDHPIGKDDPAGVADVLVEAALTTIQDCEDSVAAVDA
                     EDKVGVYRNWLGLMRGDL"
BASE COUNT          363 a          734 c          664 g          312 t
ORIGIN      
        1 cgtgcccgtc atcgccgaca tcgacgccgg cttcggcaat gccgaggcga cctatctgct
       61 ggccaagaag atgatccagg ccggcgcctg cgcgctgcag atcgaaaacc aggtctccga
      121 cgagaagcag tgcggccacc aggacggcaa ggtcacggtc ccgcacgagg acttcatcgc
      181 caaggtgcgc gcctgccgct acgccttcct ggagttgggc gtcgacaacg gcatcgtggt
      241 cacccgcacc gacagcctgg gcgcgggcct gaccaagcag atcgcggtca gccacacccc
      301 gggcgacatc ggcgaccagt acaactcctt cctcgactgc gaggaaatct cgccggccga
      361 gatgaagaac ggcgacgtgg tgctgaaccg cggcggcaag ctgctgcgcc ccaagcgcct
      421 gccgtcaaac ctgttccagt tccgcgccgg caccggcgag gaccgttgcg ttctggactc
      481 gatcacctcg ctgcagaacg gcgcggacct gctgtggatc gagaccgaga agccgcacgt
      541 cgagcagatc gccggcatga tggaccgcat ccgcacggtc gtccccaacg ccaagctcgc
      601 ctacaacaat tcgccctcgt tcaactggac cctcaacttc cgtcagcagg tctacgacgc
      661 ctggaaaaca gccggaaagg atgtgtcggc ctatgaccgg gccggcctga tgagcgtcga
      721 ctatgacgcc acggctctgg cgatcgaagc cgacgagaag atccgcacct tccaggccga
      781 cgccgcgaag cggtcgggca tcttccacca cctgatcacg ctgccgacct atcacacgac
      841 ggcgctcagc accgacaacc tggccaagga gtacttcggc agccagggca tgctgggcta
      901 cgttctgaac gtccagcgcc aggaaatccg ccagggcatc gcctgtgtga agcaccagaa
      961 catgtccggc tccgacctgg gcgatgacca taaggaatac ttcgccggcg aggcggccct
     1021 caaggccggc ggcgcgcaca acacgatgaa ccagttcgcg taaagacgcg ggtcccggtt
     1081 cgtccgacga gacttgggct cccgccgcct ggcgggggcc tttcttttct ccggccgccc
     1141 tgcaatttgc gcgggccctg tcgccaagcc ctcctggagc ccggtcacgc cgatggacat
     1201 cacgagccgc ctctcggtcg acgacatcct gcacgcgttc gtggaagacg agctgctgcc
     1261 cggaacgggc atagggtccg ccgccttctg ggcgtcgctg gaggcgatcc tgacggactt
     1321 caccccgcgc aacgccaccc tgctcgcgcg ccgtgacgag ctgcagggca agatcgacgg
     1381 ctggtggcgc gcgcgccgcg gacaggcctt cgacgtcacc gcggagacca ccttcctgcg
     1441 cgagatcggc tacctgctgc ccgagccgcc tgccttccag atcgccaccg agaacgtcga
     1501 ccccgagatc gccaggctgg ccgggccgca gttggtcgtg cccgtgtcca acggccgctt
     1561 tgcgctgaac gccgccaatg cgcggtgggg cagtctctac gacgccctct atggcaccga
     1621 cgccctggag ccgcctactg gcggcaaggg ctatgacccc ctgcgcgggg ccaaggtggt
     1681 ggccttcgcg cggcagtttc tggaccgcgc cgcgccgctt tccaccggct cccacgcgga
     1741 cgccgtgggc tatttcgtcg gtcagggcgg gctcatcgtg cggctacggg gcggtcagga
     1801 aagtgtgctc gccgatcccg accagttcgt cggctggcgc ggcgaggccg gaacgcccca
     1861 ggcggcgctg ctggtccaca acagcctgca ccttgagatc cagatcgacc gcgaccatcc
     1921 gatcggcaag gacgacccgg ccggcgtcgc cgatgtgctg gtggaggccg cgctcaccac
     1981 catccaggac tgcgaagact ccgtcgccgc cgtggatgcg gaggacaagg tgggcgtcta
     2041 ccgcaactgg ctggggttga tgcgcggcga cct
//
LOCUS       DATAJL010000208         3916 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104631,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000208 DATAJL010000000
VERSION     DATAJL010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3916
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104631"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            60..401
                     /locus_tag="VHN39_03925"
     CDS             60..401
                     /locus_tag="VHN39_03925"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX2815516.1"
                     /translation="MVRGFLAAASLTALVAACASMGGRVGGLPPSAAARGHEVARRAC
                     AACHAVEAQGVSPRVKAPAFASQEMRHTASLQDRVADLTRRGHYDMPPLKLSPDEVRD
                     LVSYIASLEGR"
     gene            475..696
                     /locus_tag="VHN39_03930"
     CDS             475..696
                     /locus_tag="VHN39_03930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815517.1"
                     /translation="MALTRKALIVDVPDGKGHMVLFGLRPYWRWQTQGSYFLGFNAIL
                     NWDHLDAGTPPPPKADEKAADKPAAKPAP"
     gene            773..1912
                     /locus_tag="VHN39_03935"
     CDS             773..1912
                     /locus_tag="VHN39_03935"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HEX2815518.1"
                     /translation="MLPAMTTRRRLLMQCAALAAAGAAHGANAARPEFTDADYRRAIV
                     IDGLGGVDDPYSPPEATVMDPRAIADLRASGLTMSRFTVNAVGNGPDVWAQTIATIAQ
                     TDQLIADNPDVLIKVGKADDIGRAKREGKSAILYGTQDTSLVGADLDRLALLKGLGVR
                     CVQLTYNLRNLCGDGSLESGNAGLSKLGHATIARIEKEKMLVDFSHGGQRTIAEGLAA
                     TTRPPVISHTGCRSLYDNPRNVWDAEMKACADRGGVIGIYWMPFLVPNSRPTGADLVR
                     HMDHVKTLCGEDHVSIGTDGGLSKTQLNDKTRAAQKKFYDDRAAQGIAAPGEGPDIFN
                     IVAEWDDDMRYRRLADGLSKAGWTAVQIEKALGGNLVRVYGEAFG"
     gene            2162..2941
                     /locus_tag="VHN39_03940"
     CDS             2162..2941
                     /locus_tag="VHN39_03940"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HEX2815519.1"
                     /translation="MAAIGVDREAEAPGAGHAAWVRACHWALAATVLALAYSGLVILM
                     AHPRLYWGQTGNDLTHAWIELPLGRNYRHGGWAAPLSFFGDSGPVSRVRTYDIFNQNG
                     WARSLHFLLAWLFAAALGLYLALGLASGHLRRAVVPGVRELAPRHILADLAAHLRLPM
                     PRAPAGPPYNLSQKLAYAGVVLVALPVMILSGLAMSPAVNAAWPILSTIFGGTQSARS
                     IHFLVLCGLALFLAVHLAMVALTGFWRQLRAMTFGSRHEGS"
     gene            2943..3713
                     /locus_tag="VHN39_03945"
     CDS             2943..3713
                     /locus_tag="VHN39_03945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX2815520.1"
                     /translation="MDREDIVLPRRALIGGLASLGGLGLAGCGEENQPTYGNLLRMGD
                     DLTYRAQRLLLPRRARVREYDHADITSIVAIGTTDPGNAKEAAFDVDHGEAYAQLRSG
                     GFAAWGLSVEGKVARPGVYSLADLKRLPQKSQITKHTCEEGWSAIAQWTGTPLSALLL
                     AAGVAPSARFVNFECYDAYADSIDMVDALHSQTILAYGMNGRDLPVQHGAPVRLRVET
                     QLGYKSMKYLRRIVVTDHFADPGKTGNIQNGWSWYAGI"
BASE COUNT          621 a         1370 c         1343 g          582 t
ORIGIN      
        1 gaaatggacg gcaaccgggg ccgggtgaag gaagagggcg agaagtaggg ccgcgtcaga
       61 tggtccgcgg cttcctcgcc gccgcttcgc ttacggccct cgtcgccgcc tgcgccagca
      121 tgggcgggcg cgtgggtggc ctgccgccgt cagcggcggc gcgcggccat gaggtggccc
      181 ggcgcgcctg tgcggcctgc cacgccgtcg aggcccaagg cgtaagcccg agggtcaagg
      241 cgcctgcgtt cgcaagccag gagatgcgcc acaccgcgag cctgcaggac cgggtggcgg
      301 acctcacccg ccggggccac tacgacatgc cgccgctcaa gctttccccc gacgaggtgc
      361 gcgatctggt gagctacatc gccagcctgg aaggccggta agggccctgg gcgggacccc
      421 cttgcgccgg cccagacgga caacatcctg ctgagcggcg tgctggaggg cggggtggcg
      481 ctcacccgca aggcgctgat cgtcgacgtg ccggacggca agggccacat ggtgcttttc
      541 ggcctcaggc cctactggcg ctggcagacg caagggtcct atttcctggg cttcaacgcg
      601 atcctcaact gggatcacct tgatgccggg accccgccgc cgccgaaggc cgacgagaag
      661 gcggcggaca aacctgccgc gaagccggct ccttgaatgt cgccaacggg tggacggccg
      721 ccgttgcggt gctagcttcg ccctaaggat tcctggcccg aaagcctccg caatgcttcc
      781 cgcgatgacc acccgacgtc gtctcctcat gcagtgcgcg gcgctcgccg ccgccggcgc
      841 cgcacacggc gccaacgccg cgcgaccgga gttcaccgac gcggactatc gccgcgccat
      901 cgtcatcgac ggtctgggcg gggtcgacga tccgtacagc ccgccggaag ccaccgtgat
      961 ggacccgcgt gcgatcgccg acttgcgggc gtccggcctg accatgtcgc ggttcacggt
     1021 gaacgcggtc ggcaacgggc ccgatgtctg ggcgcagacc atcgccacga tcgcgcagac
     1081 cgaccagctg atcgccgaca accccgatgt gctgatcaag gtcggcaagg ccgacgacat
     1141 cggccgcgcc aagcgcgagg gcaagtcggc catcctctat ggcacgcagg acaccagcct
     1201 ggtgggcgcc gacctcgacc ggcttgcgct gctcaagggc ctgggggtgc gctgcgtcca
     1261 gctgacctac aacctgcgca acctgtgcgg cgacggctcg ctggagtcgg gcaacgccgg
     1321 cctctccaaa ctggggcacg cgaccatcgc gcggatcgag aaggagaaga tgctggtgga
     1381 cttcagccac ggcggccaaa ggaccatcgc cgagggcctg gcggcgacca ctcgcccgcc
     1441 ggtcatcagc cacaccggct gccgctcgct gtacgacaat ccgcgcaacg tctgggacgc
     1501 cgagatgaag gcctgcgccg atcggggcgg cgtgatcggc atctactgga tgccgttcct
     1561 tgtgccgaac agccggccca cgggggctga cctcgtgcgc cacatggacc acgtgaagac
     1621 cctctgcggc gaggaccacg tgagcatcgg caccgacggc ggcctcagca agacccagct
     1681 caacgacaag acccgcgccg cccagaagaa gttctacgat gaccgcgccg cgcagggaat
     1741 cgcggcgcca ggtgaggggc cggatatctt caacatcgtc gccgagtggg acgatgacat
     1801 gcgttaccgc cgcctggccg acggtctgtc gaaggccggc tggacagccg tccagatcga
     1861 gaaggcgctg ggcgggaacc ttgtgcgcgt ctacggtgaa gccttcggat agggcggagt
     1921 tcgcgtcggc tcggaactcg ggcgcgcagt gcggccacgc ttgtgagcgc gccccgctag
     1981 ccggctggtc ggcgtagatt ttcatcagac ggtagaggca gtcgcggctg tcgtacgcac
     2041 cttgggatcg agtggcgggg ccaggggcga acgcgggccc gagcacaatt ccgttcgcca
     2101 gatccggcga gtgcgcctag ccttccgccc acggatcaga ggctgtcgca acgggggcga
     2161 gatggcggcc ataggcgtcg atcgagaggc cgaggcgcca ggcgcgggtc acgcggcctg
     2221 ggtgcgggcc tgccactggg cgctggcggc caccgtgctc gccctggcct attccgggct
     2281 cgtcatcctg atggcccacc cgcgcctcta ttggggccag acgggcaacg acctgaccca
     2341 cgcctggatc gagctgccgc tggggcgcaa ctaccggcat ggcggctggg ccgcgccgct
     2401 cagcttcttc ggggactcag ggccggtcag ccgggtgcgg acctacgaca tcttcaatca
     2461 gaacggctgg gcgcgcagcc tgcacttcct cctggcctgg ctgttcgccg ccgcgctcgg
     2521 cctctacctc gccttggggc tggcgagcgg gcacctgcgg cgcgcggtgg tgccgggcgt
     2581 ccgcgaactg gcgccgcgcc acatcctggc cgacctcgcc gcccacctgc gcctgccgat
     2641 gccccgggcg ccggccggac cgccctacaa cctttcgcag aaattggcct acgccggcgt
     2701 cgtccttgtg gcgctgccgg tgatgatcct cagcggcctg gccatgtcgc cggcggtgaa
     2761 cgccgcctgg ccgatcctct cgacaatctt cggcgggacc cagtcggccc gctcgatcca
     2821 cttcctggtc ctgtgtggac tggccctgtt cctggcggtc cacctggcga tggtggcgct
     2881 caccggtttc tggcgacagc tgcgcgccat gacctttggt tcgcggcatg aggggagctg
     2941 agatggaccg cgaagacatc gtgcttccga ggcgcgccct gatcggcgga ttggcgagcc
     3001 tgggcggcct ggggctggcc ggctgcggcg aggagaacca gcccacctac ggcaacctcc
     3061 tgcggatggg cgacgacctg acctaccgcg ctcagcgcct gctcctgccc aggcgcgccc
     3121 gcgtccgcga atacgatcac gccgacatca cctcgatcgt ggccatcggc accaccgacc
     3181 cgggcaacgc caaggaagcc gccttcgatg ttgaccatgg cgaggcctac gcccagcttc
     3241 ggtcgggagg cttcgcggcc tggggcctgt cggtggaggg caaggtggcc cgacccggcg
     3301 tctattccct ggcggacctg aagcgccttc cgcagaagag ccagatcacc aagcacacct
     3361 gcgaggaggg ctggtcggcg atcgcccagt ggaccgggac gccgctcagc gccctgctgc
     3421 tggccgccgg cgtcgcgccc agcgcgcgct tcgtcaattt cgagtgctac gacgcctatg
     3481 ccgacagcat cgacatggtc gacgcgctgc attcccagac gatcctggcc tacggcatga
     3541 acggccgcga cctgccggtg cagcacggcg cgccggtgcg cctgcgcgtc gagacccagc
     3601 tcggctacaa gtccatgaag tacctgcgcc gcatcgtggt gaccgaccat ttcgccgacc
     3661 ccggaaagac cgggaacatc cagaacggct ggtcgtggta cgccggtatc tgaggccggc
     3721 gcccgtctaa atctgacggg aacgaccagg ctatcctttt caagacgaca cccgccggcg
     3781 ctctggccgc gcggcgatgc gcgggtcttc aacggcgccc cgttggcggg caggcctcgt
     3841 tcaacacccc tgcgacgccg ggtgaaatcc caacgcggaa agtccgggat tagacattca
     3901 ctcatgtgtg aatgaa
//
LOCUS       DATAJL010000209         2924 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29007,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000209 DATAJL010000000
VERSION     DATAJL010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2924
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29007"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            376..702
                     /locus_tag="VHN39_03950"
     CDS             376..702
                     /locus_tag="VHN39_03950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815521.1"
                     /translation="MRKLMAAIGLLALVAAVPARAGTLEEITTHGMVITLGDMDIDLT
                     FTPDGKFSGLDGQITGTWKIDGDKMCTTSNFDPNETCAVYPKDKKSGDSFDLTGPQGT
                     AKVKIK"
     gene            complement(737..1414)
                     /locus_tag="VHN39_03955"
     CDS             complement(737..1414)
                     /locus_tag="VHN39_03955"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815522.1"
                     /translation="MNKVRGAAFAAMLLGGVAAGQAQAANLVTNGDFETVDLSNPLHR
                     PVGWTVDLDQALIDARGSDLVACCGVTGTPAELANHMIVFDGADPGETRISQDLHTIA
                     GAAYDLVYFLGALGEGETTVLARLYDDAPGGGEIIGRSVLVPVISSEYAAQFAIDVPF
                     VAVSDLTRLSFSYTGTGRFIDPVLDNVTVTGPAGVPEPASWALMLVGFGGLGVLLRRR
                     RAEAVAA"
     gene            complement(1673..2341)
                     /locus_tag="VHN39_03960"
     CDS             complement(1673..2341)
                     /locus_tag="VHN39_03960"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815523.1"
                     /translation="MITKRLMKSLLAASALAVVATGSTASHAATFDVAFTASATGFVE
                     GGTDFDGFHFDQFSVFLSPATPTDLPITVAQGDTINTTVTFDGLVTIPVSEVRTDLVQ
                     FLSGDGFPATGTQVDGTYKFFNGSDLVNTFGFESTTSGGLASFAAVFPPSNGAFTFDS
                     FTDDFVVTTLSAPATIDHSSFTYSLVSNLPAVPEPATWSLMLVGFGGLGALLRRRRAE
                     AVAA"
     gene            2634..2852
                     /locus_tag="VHN39_03965"
     CDS             2634..2852
                     /locus_tag="VHN39_03965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815524.1"
                     /translation="MMTMPNTVDWVPLDHAAREPVKAGDLVSADAGGLPIYRVMALEE
                     GRAWVATSRGAPARAMPLTCFRWRGADG"
BASE COUNT          527 a          953 c          990 g          454 t
ORIGIN      
        1 gtctccagct ggtcaaggaa agcctgggcc gaggcataga tccgcacccc gaagccggcc
       61 gacgccagga ggcgggccag ggcgccgcga agcgcgtcgt cgtcgtcgac cacatgcacc
      121 aggggctcgg cgctcatggc tcggcgcccg ccagcgcgct ccgatccagt cgaaccaacg
      181 aaaaccatat gttgccgagc cttagcccaa gggcccttga gcgatcacca tactcccgct
      241 tgtggtgact gcaatcgggg gttgtctccg tgcggcaatg tgcacttctt tcgcaggccc
      301 ggccactggc gagcgggcgc gtcgggcctt agactggcgg cttcaatggg gcgcttgaag
      361 atggggagat tggacatgcg caaactgatg gccgctatcg gccttctagc cctggtcgcc
      421 gccgttccgg cccgcgccgg cacgctggag gaaatcacca cccatgggat ggtcatcacc
      481 ctgggtgaca tggacatcga cctcacattc acgccggacg gcaagttctc cggcctcgac
      541 ggccagatca ccggcacctg gaagatcgac ggcgacaaga tgtgcaccac ctcgaacttc
      601 gatccgaacg agacctgcgc ggtctacccc aaggacaaga agtccggcga cagcttcgac
      661 ctgaccggcc cgcagggcac ggccaaggtg aagatcaaat aggcgacgcc ggaccccgaa
      721 gagtccgggg ttgggctcag gccgcgacag cctcggcgcg gcggcggcgc aggagcacgc
      781 ccagaccgcc gaagccgacc agcatcagcg cccaactcgc cggctcagga acgcccgccg
      841 ggcccgtcac ggtgacgttg tccagcacgg gatcgatgaa ccgtccggtg ccggtgtagc
      901 tgaaggacag ccgcgtcagg tcgctgacgg ccacgaacgg gacatcgatc gcgaattgcg
      961 cggcgtattc gctgctgatg acgggcacca ggacagaacg cccgatgatc tcaccgcccc
     1021 ctggagcgtc gtcgtagagg cgggccagca cggtggtctc cccctcgccc agggctccga
     1081 ggaagtagac gaggtcgtag gccgcgcccg ctattgtgtg cagatcctgg ctgatccggg
     1141 tctcgccggg atcggcgccg tcgaacacga tcatgtggtt ggcgagttcg gccggcgtgc
     1201 cggtcacccc gcagcaggcg acgaggtccg agcctcgcgc gtcgatgagg gcctggtcca
     1261 ggtccacggt ccagcccacc ggccgatgca gggggttgct cagatcgaca gtttcgaaat
     1321 cgccgttggt gaccaggttc gcggcctgag cctgacccgc cgcaacgccc ccgagcagca
     1381 tggccgcgaa cgcggcgcct cggaccttgt tcacgatctg cttccttccc tcgccgggac
     1441 gccgcttggg gtgtcctcaa cctgttggcc gacgcaatcg cgccgggtgt cggcaagggg
     1501 ttagaggcga gtggggcgcg caagaagatg catcgtctgt cgtcagacgt cgccgagttg
     1561 caagccgtct ttgggacgtg cgtcgtgggt cggccgccgc cggcttcccg ccaagcaacg
     1621 accgtcgcca gcgccctcag gcgctgaaga cggccgaaat catgagtaga tgctaggccg
     1681 cgacagcctc ggcgcggcgg cggcgcagga gcgcgcccaa gccgccgaag ccgaccagca
     1741 tcagcgacca tgtcgccggt tccggcacgg cgggaaggtt gctgaccagg gaataggtga
     1801 atgacgaatg gtcgatcgtt gccggggccg agagggtcgt cacgacgaaa tcatccgtga
     1861 agctgtcgaa ggtgaaggcc ccattggagg gcggaaagac agccgcgaaa ctcgcaagtc
     1921 cgcccgaggt ggtgctctcg aaaccaaacg tattgaccag gtccgagccg ttgaagaatt
     1981 tgtaggttcc atcgacctgg gtgccggtgg ccggaaaccc atcccccgac aggaactgaa
     2041 ccagatccgt gcggacttcg gagacgggga tcgtcaccag accgtcgaag gtgacggtgg
     2101 tgtttatggt gtcgccctgg gcgacggtga tcggcaggtc cgtcggggtt gcagggctca
     2161 agaagaccga gaactggtcg aagtggaacc cgtcgaagtc ggtcccgcct tccacgaagc
     2221 cggtggcgct tgcagtgaat gcgacatcga acgtcgcggc atgcgaagcc gtcgaacccg
     2281 tcgcgaccac cgccagggcg gaggctgcca gcagagactt catcagacgc ttggtgatca
     2341 ttgtacgttt ccctaaaatc cactgacgcg cgctcggctc aggcctgagc tgctttcata
     2401 agaaagttat cagggcggcc cgggcgcggc atggctcaga tgcgctatgt ttcgagggga
     2461 aatggggctt ccggcgcccg gaattcccct gtcaggcgac taatccgccc gccgttcgcg
     2521 tctcaggcga acccgccacc tgaacggcgg ctaaacgacc ggctcagctt cgcctcacgc
     2581 ccgccggcgc atccttgcgc tcgatccgcc ccttcgcggc ggagcgctag gtgatgatga
     2641 cgatgccaaa caccgtggac tgggttcccc tggaccatgc cgcccgcgag ccggttaagg
     2701 ccggcgacct ggtctccgcc gacgccggcg gcctgccgat ctaccgggtc atggcgctgg
     2761 aggagggccg cgcctgggtg gccacgagcc ggggcgcgcc ggcccgggcc atgccgctca
     2821 catgcttccg ctggcgcggc gccgacggtt aggctggatc gccgcgcggc cccgtgacat
     2881 gcaggaggtc aacgattggc gacctcagag ggacggctgt gcgg
//
LOCUS       DATAJL010000210         4171 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104635,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000210 DATAJL010000000
VERSION     DATAJL010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4171
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104635"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VHN39_03970"
     CDS             complement(<1..445)
                     /locus_tag="VHN39_03970"
                     /inference="COORDINATES: protein motif:HMM:NF042769.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase fold domain-containing
                     protein"
                     /protein_id="HEX2815525.1"
                     /translation="MPLDPACEAMLAAAAPSDISVEDFRAREPAHVEALRPFRQPVAR
                     IEDRTIPGPAGEVPIRIYTPPGEGPHALVVMAHGGGWIVGSIETHEVKARDLCVALDA
                     VVVSIEYRRAPEHPFPAAFDDCWAALVWASDHAVELGADPRRVAVE"
     gene            537..1553
                     /locus_tag="VHN39_03975"
     CDS             537..1553
                     /locus_tag="VHN39_03975"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX2815526.1"
                     /translation="MTGPLRIGVLSTARIVRQAMIEAAGEVPEVRIVAVASRDRARAA
                     AFAQAHGIPRVHDGYADLLDDPEVEVVYNPLPNSLHAYWSIAAIEAGKAVLCEKPLAS
                     NAAEARRMADAAARTGSPLIEAFHYRHHPMALSIARRLREGAVGELLEVRAEMKVPRR
                     LLADDDIRFDPSLAGGAAMDLGVYGVNILRAMTDEEPRVTAARATILAAPDVDGAMEA
                     TLAFPSGAAGAISCSLVHDALVARLTVRGTRGELVAENPFLPQLGNRLTTTAEGVATV
                     TRFPRTATYVHQLRALARTLREGAPTPTTAEDGVRTMAVIDDIYRLSGLGVRRAPVPA
                     EPAQ"
     gene            complement(1547..2305)
                     /locus_tag="VHN39_03980"
     CDS             complement(1547..2305)
                     /locus_tag="VHN39_03980"
                     /inference="COORDINATES: protein motif:HMM:NF019349.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX2815527.1"
                     /translation="MERRAALSSSVVQIPKAAQVIADTLRRRIVLGALAPGDALPNEP
                     ELMSEFGVSRASLREALRILETEALIEVRRGAKGGVRIRRPSDEVAANAMGALLQMRG
                     ATLDEVLEALEIIEPPLMGTLAARRSEADLEVFRAHIERERALIDDFPAFSQATTDLH
                     RILAERSKNAVLALILVMLDEIFRRHAPHFVARARPDQLKLNERGFANHAALVDMIAA
                     RNAAAAEAVWRAHMAEVKAVILSELGGTMVLDLY"
     gene            complement(2538..2738)
                     /locus_tag="VHN39_03985"
     CDS             complement(2538..2738)
                     /locus_tag="VHN39_03985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815528.1"
                     /translation="MQSSEYCLAKSAELLRLSDAAEDAAMRAAWMAKAREWLGAAVVA
                     AFEEEVEVAAAARRAQAASSSA"
     gene            complement(3043..>4171)
                     /locus_tag="VHN39_03990"
     CDS             complement(3043..>4171)
                     /locus_tag="VHN39_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815529.1"
                     /translation="SSSATSARLLNLAAVAAQHSEVVEIQSEKLGFQANPFFETPLLN
                     TSLVLKHSPRTHERPLFDRPPSIATKIIIPFDPKNLAIGGRSVFVGQKRWIEQLESLS
                     NEAPTLQRDCEVLRALDELPSLDPFLVRAHLSRRGFVVARRYLKISEADVDRMRKTVA
                     AEVDQLVGQAFSGGGTADHTDKLALLLLTNGADARLEPLRLTLRLDGEAYEEGIFAWR
                     GFLYYKWAVESLHLRLMRLMIEIGHLKADAKSDPGTATEIERAKRRLLARIEATELSA
                     VQALGVYDSAFYGLVRHNEPSVFRDFLLASPRMFMKLGEAVGGLSHITSYWRYRFPDG
                     APLDVGGLEALEIINEFEASLPAVLADHSSAGWMQDNLETT"
BASE COUNT          697 a         1426 c         1363 g          685 t
ORIGIN      
        1 cttcgacggc cacgcgccgc ggatcggcgc cgagctccac cgcgtggtcc gacgcccaga
       61 cgagcgcggc ccagcaatcg tcgaaggcgg ccgggaacgg atgctccggc gcccggcggt
      121 actcgatgga cactaccacg gcgtccagcg ccacgcagag gtcgcgggcc ttcacctcat
      181 gggtctcgat ggagccgacg atccagccgc cgccgtgagc catgaccacc agggcgtgag
      241 gtccctcgcc cggcggcgtg tagatccgga tcggaacctc gccggcggga cccgggatcg
      301 tgcggtcttc gatccgcgcc acaggctggc ggaagggccg cagcgcctcg acgtgcgccg
      361 gctcccgcgc ccggaaatcc tccaccgaga tatcggacgg tgcggcggcg gcaagcatgg
      421 cttcacaggc gggatcgagc ggcatggccg gactcctttg gatccatcta atagtataac
      481 tattgcacct aaatgaggtt tgcgccacaa caacgcgagg caaggaggga cagcttatga
      541 caggtccgct gcggatcggc gtgctgagca cggcccggat cgtccgccag gcgatgatcg
      601 aggcggcggg cgaggttccc gaggtccgca tcgtcgccgt ggcctcgcgc gatcgcgccc
      661 gggcggcggc tttcgcccag gcccacggca ttccccgtgt ccacgacggc tatgccgacc
      721 tgctggacga tccggaggtg gaggtggtct acaaccccct gcccaacagc ttgcacgcct
      781 actggtcgat cgccgcgatc gaggccggca aagcggtgct ctgcgagaag ccgctggcgt
      841 cgaacgcggc ggaggcgcgc cgcatggcgg acgccgcggc gcgcaccggc tcgccgctga
      901 tcgaggcctt ccactaccgg catcatccga tggcgctttc cattgcccgg cgcctgcggg
      961 agggcgcggt gggcgagctt ctggaggtcc gcgccgagat gaaggtcccg cgccgcctgc
     1021 tggccgatga cgacatccgc ttcgatccca gcctcgccgg cggcgccgcc atggatctcg
     1081 gcgtctatgg ggtgaacatc ctgcgcgcca tgaccgacga agagccgcgg gtgacagccg
     1141 cccgggcgac catcctggcc gcgcccgacg tcgacggcgc catggaggcg accctggcgt
     1201 tcccgagcgg cgcagccggc gcgatcagtt gttctcttgt ccacgacgcc ctggtcgcgc
     1261 gactgaccgt gcgcgggacg cgcggggagc tggtcgccga gaaccccttc ctgccccagt
     1321 tgggcaaccg cctgaccacg acggcggagg gggttgcgac cgtcacccgc ttcccgcgca
     1381 cggcgaccta tgtccatcag ttgcgcgccc tggcccgcac cctgcgcgag ggcgcgccga
     1441 ccccgaccac ggcggaggac ggcgtgcgga cgatggcggt gatcgacgac atctatcggc
     1501 tcagcggcct gggcgtgcgc cgcgcgccgg tcccagccga gccggctcaa tagaggtcga
     1561 gcaccatcgt cccgcccagt tccgacagga tcactgcctt cacctcggcc atgtgcgccc
     1621 gccagaccgc ctcggcggcg gcggcgttgc gggccgcgat catgtccacc agggcggcgt
     1681 ggttggcgaa accccgctcg ttgagcttga gctgatcggg ccgcgcgcgg gccacaaagt
     1741 gcggcgcgtg gcggcggaag atctcgtcca gcataaccag gatcagggcc aagaccgcgt
     1801 tcttcgaccg ctcggccagg atccggtgca ggtcggtggt cgcctggctg aaggccggga
     1861 agtcatcgat cagcgcccgc tcgcgctcga tgtgcgcccg gaacacctcc agatccgcct
     1921 cgctgcggcg cgcggccaag gtccccatca gcggcggctc aattatctcc agcgcctcca
     1981 gcacctcatc gagggtcgcc ccgcgcatct gcagcagcgc gcccatggcg ttggccgcca
     2041 cctcgtcgga gggccggcgg atgcgcactc cgcccttggc gccgcggcgc acctcgatca
     2101 gcgcttcggt ctccaggatg cgcagcgctt cgcgcagcga cgcccgcgag accccgaact
     2161 ccgacatcag ttccggctcg tttggcaagg catcgcccgg cgccagcgcg cccagcacga
     2221 tgcgccggcg caaggtgtcg gcgatcacct gggcggcctt cggaatctgg acaacggagg
     2281 aggagagcgc ggcgcgacgt tccatgggga ctcttgcgag acgctatgtt ggacgcatac
     2341 ccgcctcgcg tcgaggcgtc tcacacaggc tcggggattc cagtctagcg gcggtcagat
     2401 cagcaattct ggctcgcggc gccttatatc gccagtaagc ggaccattta gacatccgct
     2461 agggatcgcc gcgcctggct ctagcaggac acgattttca atcgcgctgg cgagcagacc
     2521 aacagcctgt ccgcggctca tgccgatgag ctcgccgcct gggcgcgacg tgctgcggcc
     2581 gccacctcaa cttcttcttc gaacgcggca accacggcgg cgccaagcca ctctcgagcc
     2641 ttcgccatcc atgcggcgcg catggcggca tcctccgcag cgtcggacag ccgcagaagc
     2701 tctgcggatt tcgccaggca atactccgat gactgcatgc ggcggcgtca atagcatcgg
     2761 aagaacaatg atcgatgaac atccgcccga atgcgagatg aggcctggga gttcagaccg
     2821 cactggactc attgaggttc gcgatcgggc gtctccgtcc atcgtcggca actccgtcgc
     2881 ccaccttcgc cgccgcaccg ccgccgcggc cgcaggattt gctcgccatc gctgatccgg
     2941 gaagtaatac cgaaccgcta gtcggttatc ggtcgctagg agcatccggt ccgaggcgcc
     3001 aactgtaagc tccgggctga acggcgcgag ttcctgaggc tcttaggtcg tctcgagatt
     3061 gtcctgcatc caaccggctg agctatgatc ggcgagaaca gccgggaggg acgcctcgaa
     3121 ctcgttaatg atctcaagcg cctccaaacc gcccacgtcc agcggcgcgc catcgggaaa
     3181 gcggtacctc cagtaacttg tgatatggga aagtcctcct acagcttcgc ccagcttcat
     3241 aaacattcgg ggtgacgcga ggaggaagtc acggaagacg ctcggctcat tgtgccgcac
     3301 cagcccgtag aacgcgctgt cgtagacccc cagcgcctgc accgcggaca gttcggtcgc
     3361 ctcgatcctg gctagaaggc gacgcttcgc cctctcgatt tctgtcgcgg ttccggggtc
     3421 actctttgcg tcggccttca ggtgaccgat ttcaatcata aggcgcataa ggcgcaggtg
     3481 cagcgattcg accgcccatt tgtagtagag gaagccgcgc caggcgaaga tcccctcttc
     3541 gtaggcttcc ccgtccaggc ggagggtcaa acgcagtggc tcaaggcggg cgtccgcccc
     3601 gtttgtgagc agcaacagcg ccagcttgtc ggtatggtct gcggtgccac cgcctgagaa
     3661 cgcctgcccg acgagttgat cgacctcggc cgcgacggtc tttcgcatgc ggtcgacgtc
     3721 ggcttccgaa atcttcaggt agcgtcgggc gacaacgaag cctctgcggc tgaggtgcgc
     3781 gcgcaccagg aagggatcaa gggagggtag ttcgtctagc gcccgcagca cctcgcaatc
     3841 gcgttggagc gtcggggctt cattgcttag ggactccaac tgttcgatcc aacgcttttg
     3901 ccccacaaac accgagcgcc cgccgatcgc caggttcttc gggtcgaacg ggataatgat
     3961 cttcgtcgcg atgctcggag gccgatcgaa gaggggccgc tcgtgcgtcc tgggactgtg
     4021 ttttagcacc agcgatgtgt tgagcagcgg ggtctcgaaa aacggattcg cctggaatcc
     4081 cagcttttca gactggattt ccaccacttc agaatgctgc gctgcaaccg cggccagatt
     4141 caggagcctg gcgctagtcg cgctgctgct c
//
LOCUS       DATAJL010000211         5275 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_54746,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000211 DATAJL010000000
VERSION     DATAJL010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5275
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_54746"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..1121)
                     /locus_tag="VHN39_03995"
     CDS             complement(30..1121)
                     /locus_tag="VHN39_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEX2815530.1"
                     /translation="MNFQPTADTEAKSPLSLEISGISKSFGRFPALNDVSLQARDKEF
                     LALLGPSGSGKTTLLRVLAGLERPDAGEVRFDGEDFLSIPVRRRKVGMVFQHYALFRH
                     MTVAQNIAFGLTVRPRRERPSRSETADRVADLLSLVQLEGLGTRFPAQLSGGQRQRVA
                     LARALAIEPRMLLLDEPFGALDAQVRRELRRWLRDLHDRAGVTTVFVTHDQEEALDLA
                     DRVAILKGGELIQLGTPNEVYENPADPFVYDFLGAACRLSGTVDGGRLTVADWETKAP
                     KDAPQGRVDVFFRPDEVAFAPSDGAGLGAEVKAVVARGPDARIECLIEGKLFELEARG
                     PGIPSGVAPGLSLRIKPLRPRVYAAKAAA"
     gene            complement(1093..1962)
                     /gene="cysW"
                     /locus_tag="VHN39_04000"
     CDS             complement(1093..1962)
                     /gene="cysW"
                     /locus_tag="VHN39_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysW"
                     /protein_id="HEX2815531.1"
                     /translation="MTVRRAVVGARPISATRLPGLAFLLVVASAMVMAVLVLMPLFVV
                     FHDAFAKGIGKYLAAISDPDAISAMKLTLLVAAIAVPLNAVFGIAAAWCIAKFEFRGK
                     GALLTLIDLPFSMSPVVSGLVWVLLFGAQGWFGTWLIDHDVKIIFATTGLVLATILVT
                     FPFVARELIPLMQDQGADEEAAALTLGAGGFTTFFRITLPNIRWALMYGVLLCNARAM
                     GEFGAVSVVSGHIRGLTTTLPLHVEVLYNDYDFVGAFAAASLLASLGLVTLVLKTGLE
                     WRHAGELSANRRH"
     gene            complement(1959..2777)
                     /gene="cysT"
                     /locus_tag="VHN39_04005"
     CDS             complement(1959..2777)
                     /gene="cysT"
                     /locus_tag="VHN39_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015419 - ABC-type sulfate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0008272 - sulfate transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter permease subunit CysT"
                     /protein_id="HEX2815532.1"
                     /translation="MQHSILPGFGLSLGITLTYLGAIVVLPLIALAVRPWELGLSGVW
                     HELSAPRVAAALRLSFGLSALAALLNAPLGILLAWTLTRYEFPGRRILDALVDLPFAL
                     PTAVAGIALTALYGPHGPLGELAARVGIKTAYSPLGIFIALVFIGLPFVVRSLQPVLQ
                     ELDHEVEEAATTLGANSLQRAVRVILPALAPSLISGVSLAFARAVGEYGSVVFIAGNL
                     PGKTEIAPLLIVIKLEQYDYAGAAAVGLAMVAISFGSLVVINWLQLALAKRGRA"
     gene            complement(2846..3901)
                     /locus_tag="VHN39_04010"
     CDS             complement(2846..3901)
                     /locus_tag="VHN39_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX2815533.1"
                     /translation="MTSTAEAGKGVTRRGLIAAGGSLAAGAVAAPLMLGGHARAESKA
                     ITLLNVSYDPTRELYKEINAAFATFWKGKTGEVLDIKQSHGGSGKQARAVIDGLQADV
                     VTLALAGDIDEIAARAKLLPANWQSRLPNNSTPYTSTIVMLVRKGNPKAIRDWGDLVK
                     PGVGVITPNPKTSGGARWAYLAAYAYGLKQGGPAAAKDYISKLFKNVPVLGAGARDAT
                     TTFAQRGIGDVLLSWENEAFLTLDEFGPNFDIVYPSSSILAEPPVALLDKNVDRHKTR
                     LVATGYLNFLYSPLAQDIIGKHHYRPRDPKAVAKYAASFKQIPLVTIDQAFGGWTKAT
                     AVHFAEGGLFDQIYKPT"
     gene            complement(4178..5182)
                     /locus_tag="VHN39_04015"
     CDS             complement(4178..5182)
                     /locus_tag="VHN39_04015"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase family protein"
                     /protein_id="HEX2815534.1"
                     /translation="MALPPVLRDRLRLPVIGSPLFIISNPDLVIAQCKAGIVGSFPAL
                     NARPASMLDEWLHRITEELAAWDRDNPDMPAAPYAVNHIVHKSSDRLEHDVEATTKWK
                     APIVITSLGAREDVNAAVHSYGGTVLHDVINDRFARKAIEKGADGLIPVAAGAGGHAG
                     HLSPFALIQGLREWFDGPIALSGSIAHGRAVLGAQAMGADLAYVGSAFIATKEANADP
                     AYQAMIVASSGEDITYTNLFTGVHGNYLTPSIVAAGLDPANLPVSDASAMNFGSGGNS
                     KAKAWRDIWGCGQGIGAVKEIPSAAELVARLSAEYEEAKAELAAKTAFTSGRVLMAAE
                     "
BASE COUNT          900 a         1803 c         1790 g          782 t
ORIGIN      
        1 gcccatcccg gctaggcgcc ccaagagggc taggcggcgg ccttggcggc gtagaccctg
       61 ggccgcaggg gcttgatgcg aagcgacagc cccggcgcga caccgctcgg aatgccgggg
      121 ccgcgggcct ccagctcgaa cagcttgccc tcgatcaggc actcaatccg cgcgtcaggg
      181 ccgcgggcga cgacggcctt cacctcagcg cccaggccgg ccccgtcgga gggcgcgaag
      241 gccacctcgt cgggacggaa gaagacgtcg acgcggccct gcggtgcgtc cttcggcgcc
      301 ttggtctccc agtcggcgac ggtcagccgg ccgccgtcga ccgtccctga cagccggcag
      361 gccgcgccca ggaagtcgta gacgaagggg tcggcgggat tctcatagac ctcattgggc
      421 gtgccaagct ggatcaactc cccgcccttc aggatcgcca cccggtcggc gaggtccagc
      481 gcctcctcct ggtcgtgggt gacgaagacc gtggtgacgc ccgcccggtc gtgcaggtcg
      541 cgcagccagc ggcgaagctc gcgccgcacc tgggcgtcca gcgccccgaa gggctcgtcc
      601 agcaggagca tccggggttc gatggccagg gcccgggcca gcgccacccg ttgccgctgc
      661 cccccggaaa gctgggcggg aaaccgcgtc cccaggccct cgagctgaac cagcgacagc
      721 agatcggcca cccggtccgc cgtctccgac cgcgagggcc gctccctgcg cggccgcacg
      781 gtcaggccaa aggcgatgtt ctgcgccacg gtcatgtggc ggaagagggc gtagtgctgg
      841 aagaccatcc ccaccttgcg gcggcgcacg gggatcgaga ggaagtcctc accatcgaag
      901 cgcacctcgc cggcgtcggg ccgctccagc cccgccagca cgcgcagcag cgtggtcttg
      961 cccgagcctg aagggcccag cagcgccagg aactccttgt ctctcgcctg cagcgatacg
     1021 tcgttcagcg ccgggaagcg gccgaaggac ttcgatatgc cgctgatttc cagcgacagc
     1081 ggtgacttgg cttcagtgtc ggcggttggc tgaaagttca ccggcgtgac gccattcgag
     1141 acctgtcttg aggaccaggg tgacgagtcc gagggaggcc aggagcgagg ccgccgcgaa
     1201 ggcgccgacg aagtcatagt cattgtagag cacctcgacg tgaagcggga gcgtggtggt
     1261 gaggccgcga atgtggccgg agacgacgga gacggcgccg aactcgccca tcgcccgcgc
     1321 attgcacagc aggaccccgt acatcagcgc ccagcggatg ttcggcaggg tgatccggaa
     1381 gaaggtggtg aacccgccgg cccccaacgt gagcgccgcg gcctcctcgt cggcgccctg
     1441 atcctgcatc agagggatca gttcgcgggc gacgaagggg aaggtcacca ggatggtcgc
     1501 cagcaccagg cccgtggtgg cgaagatgat cttgacgtcg tggtcgatca gccaggtccc
     1561 gaaccagccc tgggccccga acagcagcac ccagaccaaa cccgacacca ccggcgacat
     1621 ggagaacggc aggtcgatga gcgtcagcaa ggcccccttc ccgcggaact cgaacttggc
     1681 gatgcaccag gccgccgcga tcccgaagac cgcgttcagc ggcacggcga tggccgccac
     1741 cagcagcgtc agcttcatgg ccgagatggc gtccgggtcg ctgatcgcgg ccaggtactt
     1801 gccgatcccc ttggcgaagg cgtcgtggaa caccacgaac agtggcatca gcacgagcac
     1861 cgccatgacc atggccgagg ccaccaccag caggaaggcc aggcccggca gccgggtggc
     1921 cgagatcggg cgcgcgccca caactgcacg gcggacggtc atgccctccc ccgtttggcc
     1981 agcgcgagtt gcagccagtt gatcaccacc agcgagccga aggagatcgc caccatggcc
     2041 aggcccacgg ccgcggcccc ggcatagtcg tactgctcca gcttgatgac gatcagcagg
     2101 ggcgcgatct cggtcttgcc gggcaggttc ccggcgatga acaccacaga gccgtactcc
     2161 ccgaccgccc gggcgaaggc caggctgacg ccggagatca gcgagggcgc cagggccggc
     2221 aggatcacgc gcaccgcgcg ctgcaggctg ttggccccga gcgtcgtcgc cgcctcctcc
     2281 acctcatggt cgagttcctg cagcaccggc tgtaacgacc gcacgacgaa cggcaggccg
     2341 atgaagacca gcgcgatgaa gatgccgagc ggcgaatagg ccgtcttgat cccgaccctg
     2401 gccgccagct cgcccaaggg accgtgcggc ccgtagagcg cggtcagcgc gatgcccgcc
     2461 accgcggtcg ggagcgcgaa cggcaaatcg accaaggcgt cgaggatccg tcggccgggg
     2521 aattcgtagc gggtcagcgt ccaggccagc aggatgccca ggggcgcgtt cagcaacgcg
     2581 gccagcgccg acaggccgaa gctgaggcgc agcgccgcgg ccacccgcgg cgccgacagc
     2641 tcatgccaga cgccactgag gcccagttcc cagggccgca cggccaaagc gatcagcggc
     2701 aggacgacga tcgcgcccag gtaagtcagc gtgatcccca gggacagtcc gaaccccggc
     2761 aggatcgagt gctgcaccca cggccggcgc cgcggcctcg ccgccgcgcg ggtccggatc
     2821 gggccggctg ggatcgcctg gtctgtcacg tgggcttgta gatctggtcg aagaggccgc
     2881 cctcggcgaa gtggacggcg gtcgccttgg tccagccgcc gaacgcctga tcgatggtga
     2941 ccagcgggat ctgcttgaag gacgccgcat acttcgccac ggccttgggg tcgcgcggcc
     3001 gatagtggtg cttgccgatg atgtcctggg ccagtgggct gtagaggaag ttgaggtagc
     3061 cggtggcgac cagcctggtc ttgtgccggt cgacgttctt gtcgagcaac gccaccggcg
     3121 gctcggccag gatcgagctc gacggataga caatgtcgaa gttgggcccg aactcgtcca
     3181 gtgtcaggaa ggcctcgttc tcccaggaga gcagcacgtc gccgatgccg cgttgggcaa
     3241 aggtcgtggt ggcgtcccgc gcgcccgcgc ccagcaccgg cacgttcttg aagagcttgc
     3301 tgatgtagtc cttggcggcc gcgggcccgc cctgcttcaa cccataggca taggcggcca
     3361 gataggccca gcgcgcgccg ccggaggtct tcggattggg ggtgataacg cccacgcctg
     3421 gcttcaccag atcgccccag tcgcggatgg ccttgggatt tcccttccgc accagcatca
     3481 cgatggtcga ggtgtagggc gtcgaattgt tcggcaggcg cgactgccag tttgccggca
     3541 agagcttggc gcgggccgcg atctcgtcga tgtcgccggc cagcgccagc gtcaccacgt
     3601 cggcctgcag cccgtcgatc accgcgcgcg cctgtttgcc ggagccgccg tggctctgct
     3661 tgatgtccag cacctcgccg gtcttgccct tccagaaggt ggcgaaggcg gcgttgatct
     3721 ccttgtagag ctcccgggtc gggtcgtagc tgacgttgag cagggtgatc gccttgctct
     3781 cggcccgggc atggccaccc agcatcaggg gcgcggccac ggcgccggcc gcgaggcttc
     3841 cgcccgccgc gatcaggcct ctgcgcgtga ccccttttcc ggcttcggcg gtgctcgtca
     3901 tgatctcaag tcctcaggaa cgggggctcg caacgcgtac gtctgaccag cgaccggaga
     3961 tccagctgcc aaaccaaccc gcgactcaag ccttgggttc agcggcggtc ttacgaattt
     4021 ctatccgcca ctgggcgtgg cgcaggcgca gtcgggcccg gtctctcgcc cgagccaggg
     4081 aaaactaggc cgcttaatcc tattcatcga ctaggattaa gctacagcag cccgcagaaa
     4141 atctgaaagt cacaaaggcg agatcaggcg tgtctgccta ttccgcggcc atcagcaccc
     4201 ggccggaggt gaaggccgtc ttggcggcga gctcggcctt ggcctcttcg tattccgccg
     4261 agagccgcgc cacgagctcc gcggcggaag ggatttcctt caccgccccg atgccctggc
     4321 cgcagcccca gatgtcgcgc caggccttgg ccttggagtt gccgccggag ccgaagttca
     4381 tggccgacgc gtccgacacc ggcaggttcg ccgggtccag tcccgcggcg acgatcgagg
     4441 gcgtcagata gttgccgtgc accccggtga acaggttcgt gtaggtgatg tcctcgccgc
     4501 tcgaagcgac gatcatcgcc tgataggcgg ggtcggcgtt ggcctccttg gtggcgatga
     4561 aggcggagcc cacataggcc aggtccgccc ccatggcctg ggcccccagc accgcgcggc
     4621 cgtgggcgat ggagcccgac agtgcgatcg gcccgtcgaa ccattcccgc aggccctgga
     4681 tcagggcgaa gggcgacaga tggcccgcgt gcccaccagc gcccgccgcc accgggatca
     4741 ggccgtcggc ccccttctcg atggccttcc tggcaaagcg gtcgttgatc acgtcgtgca
     4801 gcacggtccc cccataggaa tggaccgccg cgttgacgtc ctcccgcgcg cccagggagg
     4861 taatgacgat cggcgccttc cacttggtgg tggcctccac gtcgtgctcc aggcggtcgg
     4921 acgatttgtg gacgatgtgg ttcacagcat agggcgctgc cggcatgtcg ggattgtccc
     4981 ggtcccaggc ggccagctcc tcggtgatcc gatgcagcca ctcatccagc attgaggccg
     5041 gcctggcgtt cagcgccggg aacgagccca cgatgcccgc cttgcactgg gcgatcacca
     5101 ggtccgggtt ggagatgatg aacagcggcg atccgatcac cggcaggcga aggcggtcac
     5161 gcagaacggg cggaagggcc atggcaatcc tcaggcttgt taatatttac gtcgtataat
     5221 caaaaacgca gctcatgcaa ccttacccaa aacgtcgcgt ccgtcagacc gcgaa
//
LOCUS       DATAJL010000212         5047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91692,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000212 DATAJL010000000
VERSION     DATAJL010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5047
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91692"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VHN39_04020"
     CDS             complement(<1..224)
                     /locus_tag="VHN39_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEX2815535.1"
                     /translation="MPPDASAAATAESLLAFWADAGVDAMLLDEPVDRIAAGRIAPPK
                     APERKTAPAAAPAPARPAQPDVSGAVALAQ"
     gene            338..1609
                     /locus_tag="VHN39_04025"
     CDS             338..1609
                     /locus_tag="VHN39_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2815536.1"
                     /translation="MHDGSVDLKAEARARVYALPIEAVDPAQPDLFAQDAMWPIFERL
                     RAEDPVHLIDSPTHGPFWSVTRWNDIMAVDSNHQTYSSADGITLQSLESKAETAKRGT
                     RPSFISMDPPRHDEQRKTVSPVVAPSNLVNMAPVIRERAGQILDSLPIGEEFDWVELV
                     SKELTAMTLATLFDFPQEERGLLPYWSDMMTNAPGHGPVESWEHKRVEIDKMVARFTG
                     LWNERVNAPPSGDLISMLAHGEATRNMDRLEYAGNLGLLIIGGNDTTRNTISGSVYAL
                     NKNQGEYAKLRADPSLITSMVSETIRWQTPLAHMARTATEDTELGGKTIKAGDRVAMW
                     YVSGNRDASMVEAPDSYVIDRARPRQHMSFGFGIHRCVGNRLAELQLTIIWEEIMKRF
                     PMIELTAEPLRTHSIFVKGYETLPVVIPQRH"
     gene            1640..2158
                     /locus_tag="VHN39_04030"
     CDS             1640..2158
                     /locus_tag="VHN39_04030"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX2815537.1"
                     /translation="MSLKLPALALAALTLSGCAMLNAPPPKPVAYSGTPQEQWVQGQK
                     AYEAWSAARHGWATTPSGLQYHVLKAAPASAAKPAPGATVTIHYVGRFIDGRVFDSSR
                     ARNEPATFPLPRLIKGWQEGVPMMRVGETWEFVIPSTIAYGERDRPPIPPGSTLLFEI
                     ELIAIPAADAAG"
     gene            complement(2155..3342)
                     /locus_tag="VHN39_04035"
     CDS             complement(2155..3342)
                     /locus_tag="VHN39_04035"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2815538.1"
                     /translation="MSDPATDPHDAPVRQSVFWLRNNFLNQAEETLRAVLAEAPGHTH
                     ARRFHGIALFQLGRRDEGIADLAAAAVQDSGNPRAWSDLSVALRDAGRVEAADKAYAQ
                     ALAAQSAGIIAPPLAEQAFCTELGQHEFKVVDYSYKAEIRYGAGRPAHPELLDLIGQG
                     RERYSAFLTGLGEIQADFAQVPMKGRYDRLTPFWLNTWFPPLDGMALTGMLRALNPAR
                     FVEVGSGVSTKFARRAVQMYGLRTQLTSIDPEPRNEIDRLCNHVIRRPLEQCRMAMFE
                     DLEPGDIFFLDSSHRCFQGSDVTVFFLEILPRLKPGVIVHIHDIYLPFDYIVGHLHRI
                     WNEQYLLATALMFGASRFEILFPAWFIGRDPELAAHAGAMLRRGALAELDLYGASFWM
                     RMV"
     gene            complement(3365..4504)
                     /locus_tag="VHN39_04040"
     CDS             complement(3365..4504)
                     /locus_tag="VHN39_04040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX2815539.1"
                     /translation="MANGNPGSGLQLRSLIKASGELELSLAKVDIPDPAADEILVRVE
                     GSPINPSDLGLLLGAADMSTAKAGAGPLLTASVPPQFMRAMAGRADQSMPVGNEGAGT
                     VVAAGSDPAAQALLGKLVAGIGGAMYAQYRTLKAADVLPLPAGASAADGASCFVNPLT
                     ALGMVGTMRAEGHTGLVHTAAASNLGQMLNKICLADGVPLVNIVRSRAQAHILTDIGA
                     THVVDSTSETFLDDLTKALADTGATLAFDAIGGGKLAGQILGAMEVAINQRATVYSRY
                     GSSVHKQVYIYGGLDTGPTQLQRSYGMAWGLGGWLLTPFLMKIGAAEGQKLRQRVADE
                     LKTTFASHYTAEIGLAEVLDPKVAAAYNKRATGEKYLINPNKGLG"
     gene            4631..>5047
                     /locus_tag="VHN39_04045"
     CDS             4631..>5047
                     /locus_tag="VHN39_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF938 domain-containing protein"
                     /protein_id="HEX2815540.1"
                     /translation="MSDTLPDGARTSPSTARNREPILEVLRPRLADGSRVLEVASGAG
                     EHAMFLAAALPGVRWQPTDRDSDALASIAAWRAVSGLEGLAEPIQLDAADLALWPKGP
                     FEAVVCINMVHISPWAATEGLMAGAGRVLTPGGRLFL"
BASE COUNT          804 a         1649 c         1825 g          769 t
ORIGIN      
        1 tcctgcgcca gcgcgacagc gccggagaca tccggctggg ccgggcgtgc gggagcaggg
       61 gcggctgcgg gcgccgtctt gcgttcgggc gccttgggcg gcgcgatccg tccggcggcg
      121 atgcggtcga cgggctcgtc cagcagcatg gcgtcgacgc cggcgtcggc ccagaaggcg
      181 agcagcgatt cggcggtcgc ggcggcggag gcgtcgggcg gcatcggaga agtcttggcg
      241 gctgaagcgg gggctgtcac ccgccgaatg ctgtttgact tgcgccacgg ctcgcgcggg
      301 tcctgaatgg cgataacaaa tgacccggga ggtcgcgatg cacgatggtt cggtggactt
      361 gaaagcggag gcccgcgcgc gggtttacgc cctgccgatc gaggcggtgg acccggcgca
      421 gccggacctg ttcgcccagg acgccatgtg gccgatcttc gagcggctgc gggccgaaga
      481 cccggtgcac ctgatcgact cgcccaccca cggcccgttc tggtcggtga cccggtggaa
      541 cgacatcatg gcggtggact ccaaccacca gacctattcg tcggccgacg gcatcacgtt
      601 gcagagtctg gaatccaagg cagagaccgc caagcgtggc acgcggccca gcttcatctc
      661 gatggacccg ccgcgtcacg acgagcagcg caagacggtg agcccggtcg tggcgccctc
      721 gaacctggtc aacatggctc ccgtgatccg cgagcgggcg ggccagatcc tcgacagcct
      781 gccgatcggc gaggaattcg actgggtcga gctggtctcg aaggagctga cagccatgac
      841 cttggccacg ctcttcgact tcccgcagga ggagcgaggc ctcctgccct attggtcgga
      901 catgatgacc aacgccccgg gccacgggcc ggtggagagc tgggagcaca agcgcgtcga
      961 gatcgacaag atggtcgcca ggttcacggg cctgtggaac gagcgggtga acgcgccgcc
     1021 ctcgggcgac ctgatctcca tgctggcgca cggcgaggcg acgcgaaaca tggaccggct
     1081 ggagtacgcc gggaacctgg ggctgctgat cattggcggc aacgacacca cgcggaacac
     1141 catctccggc tcggtctacg cgctgaacaa gaaccagggc gagtacgcca agctgcgcgc
     1201 ggatccctcg ctgatcacct ccatggtgtc ggagaccatc cgctggcaga cgccgcttgc
     1261 gcatatggcg cgcacggcga ccgaggatac cgagttgggc ggcaagacca tcaaggccgg
     1321 cgaccgggtg gccatgtggt acgtctcggg caaccgcgac gccagcatgg tcgaggcgcc
     1381 cgacagctac gtcatcgacc gcgcgcggcc ccgccagcac atgtcgttcg gcttcggcat
     1441 ccatcgctgc gtcggcaacc ggctggccga gctgcagctg acgatcatct gggaggagat
     1501 catgaagcgc ttcccgatga tcgaactcac cgccgagccg ctgcggaccc actcgatctt
     1561 cgtgaagggt tacgagaccc tgccggtggt gattccgcag cgccactagg gcggacgggt
     1621 cttgggtttt gggggttcga tgtctttgaa gttgcccgct ctggcgctgg ccgcgctgac
     1681 gctgtccggc tgcgccatgc tcaacgcgcc gccgcccaag ccggtcgcct acagcggcac
     1741 gccgcaggag cagtgggttc agggccagaa ggcctatgag gcctggagcg cggcgcgcca
     1801 cggctgggcg accacgccca gcggcctgca gtaccacgtc ctcaaggccg cgccggccag
     1861 cgccgccaaa cccgcgcccg gggccacggt caccatccac tatgtgggcc gcttcatcga
     1921 cggccgggtc ttcgacagct cccgcgcccg caacgagccc gccaccttcc cgctgccccg
     1981 cctgatcaag ggctggcagg agggcgtgcc gatgatgcgg gtgggcgaga cctgggaatt
     2041 cgtcatcccg tcgaccatcg cctacggaga gcgcgaccgc ccgccgatcc cgcccggcag
     2101 caccctgctc ttcgagatcg aactgatcgc gatcccggct gcggacgcgg cgggctagac
     2161 catccgcatc cagaagctcg cgccatagag gtcgagctcg gcgagggcgc cccggcgcag
     2221 catggccccg gcgtgcgcgg cgagctccgg atcgcggccg atgaaccagg cgggaaacag
     2281 aatctcgaag cgcgaggctc cgaacatcag agcggtcgcc aggaggtatt gctcgttcca
     2341 aatccggtgc aggtggccga cgatgtagtc gaaggggagg tagatgtcgt ggatgtggac
     2401 gatcacgccg ggtttcagcc gtggcaggat ctccaggaaa aagaccgtga cgtccgaacc
     2461 ctggaagcac cggtgagagg aatccaggaa gaagatgtcg ccaggttcca ggtcctcgaa
     2521 catcgccatc cggcactgtt ccaagggccg gcggatgacg tgattgcaga gccggtcgat
     2581 ctcgttgcgc ggctccgggt cgatggacgt gagctgggtt cgaaggccgt acatctgcac
     2641 ggctcggcgg gcgaacttgg tggagacgcc ggaaccgacc tcaacgaagc gggccgggtt
     2701 cagggcgcgc agcatgccgg tgagcgccat accgtcgagc ggagggaacc aggtgttgag
     2761 ccagaagggc gttagcctgt catagcggcc cttcatggga acctgggcga agtccgcctg
     2821 gatttcgccg agcccggtga ggaaggcgct gtaacgctcg cgaccttgcc cgatcaggtc
     2881 cagcagctcc ggatgagccg ggcggccggc gccgtagcga atctcggcct tgtaagaata
     2941 gtcgacgacc ttgaactcgt gctggccaag ctcggtgcaa aaggcctgct ccgccagggg
     3001 tggagctatg atcccggcgg actgggcggc gagggcctgt gcgtaggcct tgtccgccgc
     3061 ctcgacgcgg cctgcgtcgc gaagcgcgac ggacagatcg gaccaggcgc gcgggttccc
     3121 ggaatcctgt accgccgccg cggcgaggtc ggcgatgccc tcgtcccggc gaccgagctg
     3181 gaaaagggcg atgccgtgga atcgccgggc gtgcgtatgg ccaggcgctt cggccagcac
     3241 ggcgcgcaga gtctcctcgg cctggttcag gaagttgttc ctcagccaga acacgctctg
     3301 cctcaccggg gcgtcgtgcg gatcggtagc gggatctgac atggcctgcc gaggatagct
     3361 gaacctagcc caggcccttg ttggggttga tcaggtactt ctcgccggtg gcgcgcttgt
     3421 tgtaggcggc ggccaccttg ggatcgagca cctcggccag gccgatctcg gcggtgtagt
     3481 ggctggcgaa ggtggtcttc agctcgtcgg ccacgcgctg gcgcagcttc tggccctcgg
     3541 cggcgccgat cttcatcagg aagggcgtca ggagccagcc gcccaggccc caggccatcc
     3601 cgtagctccg ctgcagctga gtggggccgg tgtcgaggcc gccatagatg tagacctgct
     3661 tgtgcacgga cgagccatag cggctgtaga ccgtggcgcg ctgattgatg gccacctcca
     3721 tggcgcccag gatctggccg gccagcttgc cgccgccaat cgcgtcgaag gcgagcgtcg
     3781 cgccggtgtc ggccagcgcc ttggtgagat catcgaggaa ggtttccgag gtcgagtcca
     3841 ccacgtgggt cgcgccgatg tcggtgagga tgtgggcctg cgcgcggctg cgcacgatgt
     3901 tcaccagcgg cacgccgtcg gccaggcaga tcttgttgag catctggccg aggttggagg
     3961 ccgcggcggt gtggacgagg ccggtgtgcc cctcggcgcg catggtgccg accataccca
     4021 gcgcggtcag cggattgacg aagcaggagg cgccgtcggc ggcgctggcg ccggcgggca
     4081 gcggcaggac gtcggcggcc ttcagcgtgc ggtactgggc gtacatggcg ccgccgatgc
     4141 cggccaccag cttgcccagc agggcctggg cggccggatc cgacccggcg gccacgacgg
     4201 tccccgcgcc ctcgttgccc accggcatcg actgatctgc gcggccggcc atggcgcgca
     4261 tgaactgggg cgggacggac gcggtcagca gcggcccggc gccggccttg gcggtagaca
     4321 tgtccgccgc gcccagcagg agcccgaggt cggaggggtt gatcggcgag ccctccacgc
     4381 ggaccaggat ctcgtcggcg gccggatcgg ggatgtcgac cttggccagc gacagttcca
     4441 actcgccgct cgccttgatc agggagcgca gctgcaggcc ggagcccggg tttccgttgg
     4501 ccatgatgtt catcctcgtc ggtcgcgttg aagcgcgcgc acagaaccgc tttgctggcg
     4561 tcggggcaat acagaagccg tcaccgcgcc atgagcggcg ctggacggcg atccggtcta
     4621 gtcttgagcc atgagcgaca ctcttcccga cggcgcccgc acctcgccct ccaccgcgcg
     4681 caaccgcgag ccgatcctgg aggtgctgcg gcctcggctg gcggacggct cgcgggtgct
     4741 ggaggtggcg agcggggccg gtgagcacgc gatgttcctg gctgcagccc ttccgggcgt
     4801 ccgctggcag ccgaccgacc gggactcaga cgccctggcc agcatcgcgg cgtggcgggc
     4861 ggtaagcggt ctggaaggcc tggccgagcc gatccagctc gacgcggcgg acctcgcgtt
     4921 gtggcccaag ggtccgttcg aggccgtggt ctgcatcaac atggtccaca tctcgccctg
     4981 ggcggcgacg gaaggcctga tggccggggc gggccgggtg ctgacgccgg gcgggaggct
     5041 cttcctc
//
LOCUS       DATAJL010000213         1983 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_78998,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000213 DATAJL010000000
VERSION     DATAJL010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1983)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1983)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1983
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_78998"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1137
                     /locus_tag="VHN39_04050"
     CDS             <1..1137
                     /locus_tag="VHN39_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HEX2815541.1"
                     /translation="DSPRGRIELIRAMLEDGGAPSKETVTHVDRCLSCLACVTACPSG
                     VDYAQLIDHGRAHIEAHYRRPLGERLLRWAIPHVMTRPRHLRGALALGRLARPLEPAL
                     RALKLSPLAALLRLVPQSAPAAQAQASYPAEGVSRGRVALLQGCVEPAMAPSIREAAI
                     RLIRRAGFEVVLASGEGCCGALSEHLGRTDEAAAFASANVAAWTRAGPFDAIVATAAG
                     CGTSLKAYGHRLGGDPAAVDAAARTRDVLEFIGEVGLPPVTRPGKLAVAYHAPCSLQH
                     GQRINARPAALLAEAGFEVRAIPEGHLCCGSAGVYNILQPELATRLRDRKAANIARTG
                     AAVVAAGNIGCIAQIAPAVGMPVVHPVELLDWATGGPRPPTLTQ"
     gene            complement(1150..1371)
                     /locus_tag="VHN39_04055"
     CDS             complement(1150..1371)
                     /locus_tag="VHN39_04055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815542.1"
                     /translation="MADRQFKPDLTGSDETLEHLLARLRSTLRRPVRPRRDGPWESFV
                     TSRRPLGGAGGAEAPIPDDKPLSDAYAPI"
     gene            1499..>1983
                     /locus_tag="VHN39_04060"
     CDS             1499..>1983
                     /locus_tag="VHN39_04060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HEX2815543.1"
                     /translation="MKLHTSVGPNPRVVKMFLAEKGLAMDFVTVDLRAGENRQPPYST
                     TVNPAGQTPALELDNGDCLTEITAICEYLEERQPSPPLIGTTAEERAATRMWTRRVDI
                     KVCEPLANGFRYAEGLPLFQNRMRCLPDAAPGLKLTARDGLEWLERQFTGPWIAGARF
                     T"
BASE COUNT          288 a          713 c          706 g          276 t
ORIGIN      
        1 gacagcccgc gcggccggat cgaactgatc agggccatgc tggaggatgg cggcgcgccg
       61 tccaaggaga ccgtcaccca cgtcgaccgg tgcctgtcgt gcctggcctg cgtcaccgcc
      121 tgcccgtcgg gcgtggacta cgcccagctc atcgaccacg gccgcgccca tatcgaggcg
      181 cactaccgcc ggccgctagg cgaacgcctc ctgcgctggg cgatcccgca tgtgatgacc
      241 cggccccgtc acctgcgcgg ggccctggcg ctcggccgac tggcgcggcc gctggagccg
      301 gcgctcaggg cgctgaagct ctcgcccctg gcggccctgc tgcgcctcgt cccgcaatcc
      361 gcgcccgccg cccaggccca ggcgtcctat cccgccgagg gcgtgagccg cggccgggtc
      421 gcgctgctgc aaggctgcgt ggagcccgcc atggcgccat ccatccgcga ggcggccatt
      481 cgcctgatca gacgggccgg gttcgaggtg gtgttggcgt cgggcgaagg gtgctgcggg
      541 gcgctttcgg aacacctggg ccggaccgac gaggcggccg cgttcgcgtc ggccaatgtc
      601 gcggcctgga cgcgggccgg cccgttcgac gccatcgtcg ccacggcggc cggttgcggc
      661 acgagcctga aggcctatgg ccaccggctg ggcggcgacc cggccgccgt ggacgccgcc
      721 gcgcgcaccc gcgatgtcct ggagttcatc ggcgaggtcg gcctgccgcc ggtgacgcgg
      781 cccggcaaac tcgccgtcgc ctatcacgcg ccttgctccc tgcagcatgg ccagaggatc
      841 aatgcccggc ccgcggccct gttggcggag gcgggcttcg aggtgcgcgc catccccgag
      901 ggccacctct gctgcggctc ggccggagtc tacaatatcc tgcagccgga actggcgacc
      961 cgcctgcgcg accgcaaggc ggccaatatc gcgcgcacgg gagcggccgt cgtggcggcg
     1021 ggcaacatcg gctgcatcgc ccagatcgcg ccggcggtgg gcatgccggt ggtccacccc
     1081 gtcgagttgc tcgactgggc gacgggcggg cctaggccgc ccacactcac tcagtaggag
     1141 cctgacgcct cagatgggcg cgtaggcgtc gctgagcggc ttgtcgtcgg ggatcggcgc
     1201 ttcggctccg ccggcgccgc cgagcgggcg ccgcgaggtg acgaagctct cccaagggcc
     1261 gtcgcggcgc ggacgcacgg ggcgacgcag ggtggagcgg agacgggcga ggaggtgctc
     1321 gagcgtctcg tcagatcccg taaggtcggg tttgaactgt cggtcagcca tggggcgctt
     1381 ccatactcca aaccgcgtcg aaacgccaca tccagatatg aaaaaatgat taacgcctga
     1441 ttcgttgacg ccccttgcgg cgccctccta gggtcttggc cacatcaggg gaaacaccat
     1501 gaagctccat acctcggtcg gcccgaaccc tcgggtggtg aaaatgttcc tggccgagaa
     1561 gggcctggcc atggacttcg tgacggtcga cctgcgggcc ggcgagaacc gccagccgcc
     1621 ctacagcacc acggtcaatc cggccgggca gacgccggcg ctggaactgg acaacggcga
     1681 ctgcctcacc gagatcaccg ccatctgcga gtatctggag gagcgccagc cgagccctcc
     1741 gctgatcggg acgacagcgg aagagcgcgc agcgacccgg atgtggaccc gccgcgtgga
     1801 catcaaggtc tgcgagcccc tggccaacgg cttccgctac gccgagggac tgccgctgtt
     1861 ccagaaccgc atgcgctgcc tgccggacgc cgcgcccggc ctgaagctga ccgcccgcga
     1921 cgggctggag tggctggagc gccagttcac cgggccctgg atcgccggcg cgcggttcac
     1981 gat
//
LOCUS       DATAJL010000214         2966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42267,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000214 DATAJL010000000
VERSION     DATAJL010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2966
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42267"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VHN39_04065"
     CDS             complement(<1..239)
                     /locus_tag="VHN39_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HEX2815544.1"
                     /translation="MADFAAARLNMVESQVRPADVTDVRIHDAMRILPRDSFLPPAKA
                     YLAYADIEVEYAPGRSLLKPRDVAKLLQSVRPMPG"
     gene            424..497
                     /locus_tag="VHN39_04070"
     tRNA            424..497
                     /locus_tag="VHN39_04070"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:456..458,aa:Cys,seq:gca)
     gene            complement(586..>2966)
                     /locus_tag="VHN39_04075"
     CDS             complement(586..>2966)
                     /locus_tag="VHN39_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018113283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0015891 - siderophore transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815545.1"
                     /translation="RITGVKAEDSAAPVQVVGAGALKRVGQPDLIQALSQNLPSFNAE
                     GYAADTAALTLSAALRGLNPNDTLVLVDGKRRHPTANLHVDPSSFQGAATADLSFIPV
                     GAIDHVEVLTDGAAAQYGSDAIAGVVNIILKGANHGGAASVTGGQYFEGDGDTGAWSL
                     NNGFALGDKGFINATVEQRYHGFSRQGGADRRVFNLDGTLAAGISAIDRAGLPGAAGS
                     PNVNNIYGDTQSNTYDGFYNAGYDLGDGIELYSMGSYGHRKASAFENFRLPSKVTGTV
                     AGVTTVPFPHGFEPREQIVEDDYALTGGIKGVAAGWNWDLSTTYGRDKDDVSTINSAN
                     ASLFADTGQTPRNFFDGTFASSEWTTTLDLDRAFDVGMASPLNVALGAENRQSKFTIA
                     QGDPLSTYKEGGQSYPGFQASDAGTHTRTNYAGYGDFALSPVEGLKLDLAGRYEHYSD
                     FGSTTVGKLTARYDFNPAFALRGTVSNGFRAPTQAEEFYSATNVAPTFAVVQLPANSA
                     AAHLAGFPSLKPEKSTNYSVGFVSHLADGLQMTLDAYQIDIRSRIVATGTLLGLNNGT
                     VVSQGVLNAIAAHGNVLDPGVTYVGISVFTNGANTKTQGVEFTANYASDFGDMGHVDW
                     SAGVNYNKTTLSKQAPLPAAVTSVAIGQTVLLGANAVDTLTTAVPREKVVLGAYWTLG
                     KWSANLRDTVFGEASERYSLDGTGNNGVNTKIPVTSITDLEVDYAIRDDTKVAIGANN
                     LFNHRPPSMPNVSNGAGGVRPADGNNVYGEPLQYSPWGINGGYYYGRITFTF"
BASE COUNT          433 a          926 c         1072 g          535 t
ORIGIN      
        1 tcgcccggca tgggacgcac cgactgcagc aatttcgcca catcgcgcgg cttcagcagg
       61 ctgcggcccg gcgcgtattc cacttcgatg tcggcgtagg cgaggtaggc cttggcgggc
      121 ggcaggaagc tgtcgcgagg caggatgcgc atggcgtcgt ggatgcgcac atcggtgacg
      181 tcggcggggc gcacctggct ctccaccatg ttcaggcggg cggcggcgaa gtcggccatt
      241 cagaagtcct tgggcgcgcg ggaaatcacg cccggcttat aggtctgccc cgcggcccaa
      301 ggcaatcgcg cccgttgctc cgaggcaggc cttctgttag ccatccgcgc ctccgggtcg
      361 tggcggctgc cgccacgacc cgttatgttt gctaaagatc gagccccgct tggggctcgt
      421 ggtggcctga tggcggagtg gttacgcagc ggactgcaaa tccgtgcacc cgagttcgat
      481 tctcggtcag gcctccaacc ctcccagcac tcgatagcgc gaactcgaac ggccgcgggc
      541 ggccggggtc gcccccggcc gcccgcaatc cgtcagaacg ccgggtcaga acgtgaaggt
      601 gatccgcccg tagtagtagc cgccgttgat cccccacggg gagtactgca gcggctcgcc
      661 atagacgttg ttgccatcgg ccggccgcac gccgccggcg ccgttcgaga cgttcggcat
      721 gctcggcggg cggtggttga agaggttgtt ggcgccgatc gccaccttgg tgtcgtcccg
      781 gatcgcgtag tcgacttcca ggtcggtgat gctggtgacc gggatcttgg tgttcacgcc
      841 gttgttgccg gtgccgtcga ggctgtagcg ctccgaggct tcgccgaaca cagtgtcgcg
      901 caggttggcg ctccacttgc ccagggtcca ataggcgccc agcaccacct tctcgcgggg
      961 aaccgcggtg gtcagggtgt cgacggcgtt ggcgccgagc aacaccgtct ggccgattgc
     1021 gaccgaggtc acggccgccg gcaggggggc ctgcttggac agggtcgtct tgttgtagtt
     1081 gacccccgcc gaccaatcca cgtggcccat gtcgccgaaa tcggaggcgt agttggcggt
     1141 gaactcgacg ccctgggtct tggtgttggc cccgttggtg aagacgctga tgcccacata
     1201 ggtgacgccg gggtcgagca cattgccgtg cgcggcgatc gcgttgagca cgccctgaga
     1261 gaccaccgtc ccgttattga ggcccaggag ggtgccggtg gcgacgatcc ggctgcggat
     1321 gtcgatctga taagcgtcaa gcgtcatctg caggccgtcg gccaggtggc tgacgaagcc
     1381 cacgctatag ttggtggatt tctcgggctt caggctcggg aagccggcca ggtgggcggc
     1441 ggccgagttg gccggcagct gaaccaccgc gaaagtcggc gccacgttgg tggccgaata
     1501 gaattcttcg gcctgggtcg gcgcgcggaa gccgttgctc acggtgccgc ggagcgcgaa
     1561 ggcggggttg aagtcgtacc gggcggtcag cttgccgacg gtggtcgagc caaagtcgct
     1621 gtagtgctca tagcgtccgg cgaggtccag cttcaggccc tcgaccgggg aaagcgcgaa
     1681 gtccccatag cccgcatagt tggtgcgggt gtgggtccct gcatccgacg cctggaagcc
     1741 cgggtaggac tgcccgcctt ccttgtaggt cgaaagcgga tcgccctggg cgatggtgaa
     1801 tttgctctgc cggttctcgg cgccgagcgc cacgttcaga ggcgaggcca tgccgacgtc
     1861 gaaggcccgg tcgaggtcga gcgtcgtggt ccattccgaa gacgcgaagg tcccgtcgaa
     1921 gaagttgcgc ggcgtctgcc cggtatcggc gaacagcgag gcgttggccg aattgatcgt
     1981 cgagacatcg tccttgtcgc gcccgtaggt cgtcgacaga tcccagttcc agccggcggc
     2041 gacgcccttg atgccgccgg tcagcgcgta atcgtcctcg acgatctgct cgcgcggctc
     2101 gaagccgtgc gggaaaggaa ccgtcgtcac gccggcgacg gtccccgtga ccttgctggg
     2161 gaggcggaaa ttttcaaagg ccgaggcctt gcggtgtccg tagctgccca tgctgtagag
     2221 ttcgatgccg tcgccgaggt cgtagccggc gttgtagaag ccatcgtagg tgttcgactg
     2281 agtgtcgccg tagatgttgt tgacgttggg cgagcccgcc gcgcccggca agccggcgcg
     2341 gtcgatcgcg ctgatgcccg cggccagggt gccgtcgagg ttgaacaccc ggcggtccgc
     2401 gccgccctgg cggctgaacc cgtgatagcg ctgctcgacc gtcgcgttga tgaagccctt
     2461 gtcgcccagt gcgaagccgt tgttgagcga ccaggcgccg gtgtcgccgt cgccttcgaa
     2521 gtattggccg ccggtcacgc tggcggcccc gccgtggttg gcgcccttga ggatgatgtt
     2581 gacgacgccg gcgatggcgt cggagccgta ttgcgcggcg gcgccgtcgg tcaggacttc
     2641 cacgtggtcg atcgcgccca ccgggataaa gctgaggtcg gcggtcgccg cgccctggaa
     2701 ggagctgggg tcgacgtgca gattggcggt ggggtggcgg cgcttgccgt ccaccagcac
     2761 cagggtgtcg ttcggattga ggccgcgcag ggccgcggaa agcgtgagtg cggcggtgtc
     2821 cgccgcatag ccttcggcgt tgaaggacgg caggttctgc gagagcgcct ggatcaggtc
     2881 gggctgtccg acccgcttca gcgcgccggc gcccacgacc tgcactggcg cagcgctgtc
     2941 ctccgccttg accccggtga tccggg
//
LOCUS       DATAJL010000215         3047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104675,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000215 DATAJL010000000
VERSION     DATAJL010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104675"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            167..652
                     /locus_tag="VHN39_04080"
     CDS             167..652
                     /locus_tag="VHN39_04080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2815546.1"
                     /translation="MSLSGGCQCGAVRFRVERWERASICHCRMCQKASGGFFGPFADV
                     EGLTWTRGQPKSFQSSNMVRRGFCEVCGTPLSFEAEGGKPSLSIGAFDDPSAIAPALQ
                     MGEAGKLPYADGLAELPGIPPSDQQRAAAHFARIVSYQHPDHDTEAWPPKAGDGPGEG
                     G"
     gene            663..1607
                     /gene="ftsY"
                     /locus_tag="VHN39_04085"
     CDS             663..1607
                     /gene="ftsY"
                     /locus_tag="VHN39_04085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEX2815547.1"
                     /translation="MTEPKRGWFQKLTAGLSRSSKQMTEQITQVFVAKEPLDQAKLDE
                     LEEMLIEADLGPHSAARITKRFSDEKFGKSVSEDEIKESLAAAIGDELSARQGDFDAL
                     AGPRPYVVLFIGVNGSGKTTTLGKIAADLTRRGAKVLVVAGDTFRAAAVEQLKIWADR
                     AGADFMSRPMNSDAAGLAFEAVERAKAQNYDVVLIDTAGRLQNKQGLMDELLKIIRVV
                     KKVDPDAPHETLLVLDATVGRNALAQENIFGNQIGVSGIVMTKLDGTARGGVLVPVAQ
                     ASDSPIKLIGVGEGIDDLQPFNARAFARSLVGLEEPVR"
     gene            1604..2233
                     /locus_tag="VHN39_04090"
     CDS             1604..2233
                     /locus_tag="VHN39_04090"
                     /inference="COORDINATES: protein motif:HMM:NF016189.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane-spanning protein YciB"
                     /protein_id="HEX2815548.1"
                     /translation="MSGEITTPAKLPKWVHHTIDYGGLVAWILTLVVLSLMHRSDAAV
                     TSSWVIVGASLLALAVGLIVERRLAPMPLVTAVLGLIFGGLTLFFHDERFIKVKPTIL
                     YTLFGLFLITGALRGKNPLKVLMGDAFHLPDPVVRTLTLRYALFFFALAIANEVVWRT
                     QTTLFWGLFKVPGVPIVIFLFAMSQAPLMMKHMPDDEAEAQAKPPADAP"
     gene            2322..2912
                     /locus_tag="VHN39_04095"
     CDS             2322..2912
                     /locus_tag="VHN39_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX2815549.1"
                     /translation="MAKSKSGAKGGIAALDQSPSHLLHRALQRALDIYAEAFGESGIT
                     QRQFALLAAADEREGATQADLVRITGIDRSTLADMARRMIGKGLLERERSNVDARANA
                     VRLTDAGREVLADARPKMAGADAKLLKLISGHGRRTTFVSLLRDLAKSAAADAAPKTK
                     TPKPKAPKPKLAKAKPVKPDKPRKGGKKAKKKAAAT"
BASE COUNT          528 a         1029 c         1032 g          458 t
ORIGIN      
        1 gcatggtgat gggcctggtg gaacgagacg gcctcgcccg gggcgaggat ttcaccgaga
       61 tcgccttcac cggcgaagcg gaaatcggga gcatcgtggc gctgaaggta accgaccacg
      121 atggcaagcg ggtcatcgcc aggacgatgg tcctggaggt ggctgaatga gcctgagcgg
      181 cggttgccag tgcggcgcgg tgcggttccg ggtcgagcgc tgggagcggg cgagcatctg
      241 ccattgccga atgtgccaga aggcctccgg cgggttcttc gggccgttcg cggacgtcga
      301 gggtctcacc tggacgcgcg gtcagccgaa gtccttccag agctccaaca tggtgcgccg
      361 tgggttctgc gaggtctgcg gcacgccgct cagcttcgag gccgaagggg gcaagcccag
      421 cctttccatc ggagccttcg acgacccgtc cgcaatcgcc ccggccctcc agatgggcga
      481 ggcgggcaaa ctgccctacg ccgacggcct cgccgagctg cccgggatcc cgcccagcga
      541 tcagcagcgc gcggcggcgc acttcgcccg catcgtctcc tatcagcacc cggaccacga
      601 caccgaggcc tggccgccga aggccggtga cggccccggc gagggcggct agaagcgcct
      661 ccatgaccga acccaaacgc ggctggttcc agaagctcac ggccggcctc tcgcgctcgt
      721 ccaagcagat gaccgagcag atcacccagg tcttcgtcgc caaggagccg ctggaccagg
      781 ccaagctgga cgagctggag gagatgctga tcgaggccga tctcggcccg cactcggccg
      841 cccgcatcac caagcgtttc tccgacgaga agttcggcaa gagcgtctcc gaggacgaga
      901 tcaaggagtc gctggccgcc gccatcggcg acgagctctc cgcgcggcag ggcgatttcg
      961 acgcgctcgc cgggccccgg ccctacgtcg tcctgttcat cggggtgaac ggctcgggca
     1021 agaccacgac gctgggcaag atcgccgccg acctcacccg ccgcggcgcc aaggtgttgg
     1081 tggtggccgg cgacaccttc cgcgccgccg ccgtcgaaca actgaagatc tgggccgaca
     1141 gggccggcgc cgacttcatg tcgcgtccga tgaactccga cgcggccgga cttgctttcg
     1201 aggccgtcga gcgcgccaag gcgcagaact acgacgtcgt cctgatcgac accgccggcc
     1261 ggctgcagaa caagcaggga ctgatggacg agcttctgaa gattatccgc gtggtgaaga
     1321 aggtcgatcc ggacgcgccg cacgagaccc tgctggtgct cgacgccacc gtgggccgca
     1381 atgcgctggc ccaggagaac atcttcggaa accagatcgg ggtgagcggc atcgtgatga
     1441 ccaagctgga cggcacggcg cgcggcggag tgctggtgcc ggtggcccag gcgtccgaca
     1501 gtccgatcaa gctgatcggc gtcggcgagg gcatcgacga cctgcagccg ttcaacgcgc
     1561 gggccttcgc ccgatcgctc gtgggtcttg aggagccggt gcgatgagcg gggagatcac
     1621 cacgccggcg aaactcccca agtgggtgca ccacaccatc gactacggag gcctcgtcgc
     1681 ctggatcctg accctggtgg tcctgagtct gatgcacagg agcgacgccg ccgtcacctc
     1741 cagctgggtg attgtcggcg cctctctgct ggcgctcgcg gtgggcctga tcgtcgagcg
     1801 ccgcctcgcg cccatgccgc tggtcacggc cgtccttggg ctgatcttcg gcggcttgac
     1861 gctgtttttc cacgacgagc ggttcatcaa ggtcaagccg accattctct acacgctctt
     1921 cggcctcttc ctgatcaccg gcgcgctgcg cggcaagaac ccgctgaagg tgctgatggg
     1981 cgacgccttc cacctgcccg atccggtggt ccgtaccctg accctgcgct atgccctgtt
     2041 tttcttcgcg ctcgccatcg ccaacgaggt ggtctggcgc acccagacca cgctcttctg
     2101 gggccttttc aaggttcccg gcgtgccgat cgtcatcttc ctgttcgcca tgagccaggc
     2161 gcccctgatg atgaagcaca tgcctgacga cgaggcggaa gcgcaggcca agccaccggc
     2221 ggacgcaccc taggcttgca tctgcgccgc tcacggagcg tctgttatga aatcgacgca
     2281 atcgctgtct aggaaggcgt gagcctcgcg ggggacgacg gatggccaag agcaagtcag
     2341 gcgccaaggg cggtatcgcc gctctcgatc agtcgcccag ccacctgttg catcgcgccc
     2401 tgcagcgcgc gctggacatc tacgccgagg cgttcggcga aagcgggatc acccagcgcc
     2461 agttcgccct gctggccgcc gccgacgagc gcgaaggcgc gacacaggcc gaccttgtgc
     2521 ggatcaccgg gatagaccgc tcgacgctgg ccgacatggc ccggcggatg atcggcaagg
     2581 gtctgttgga gcgcgaacgc tcaaacgtcg atgcgcgcgc caacgcggtg cgcctcaccg
     2641 acgccggccg cgaggtgttg gctgacgcgc ggccgaagat ggcgggcgcc gatgcgaagc
     2701 tgctcaagct gatctcaggc cacggccgcc ggacgacctt cgtcagcctg ctgcgcgacc
     2761 tggcgaaatc cgctgcggcg gacgctgcgc cgaagacaaa gacgcccaag ccgaaggccc
     2821 cgaagcccaa gctcgccaag gcaaagcccg tgaagccgga caagccgcgc aaaggcggca
     2881 agaaggcgaa gaagaaggcg gcggcgacct aacgcaggcg cgctgagtcc ctgggttgcc
     2941 ccggcccgac gatcgtcgag gggcgcaaat gcggcgagcg cagccgctca taggatttat
     3001 cgccaaggct gcgggtgatg atggacagca gcgtcgcccc gtcggcc
//
LOCUS       DATAJL010000216         1588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91727,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000216 DATAJL010000000
VERSION     DATAJL010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91727"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..143)
                     /locus_tag="VHN39_04100"
                     /pseudo
     CDS             complement(1..143)
                     /locus_tag="VHN39_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919399.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            142..963
                     /locus_tag="VHN39_04105"
                     /pseudo
     CDS             142..963
                     /locus_tag="VHN39_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516966.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M24B family metallopeptidase"
BASE COUNT          270 a          533 c          494 g          291 t
ORIGIN      
        1 cgcaccacct cgacctcatc gggcaggctt tcttgcgcct ctgtcgccac ccagtgcagg
       61 aagcgggtca gggcggcgcc gtcgcggatg tgggcgcggc gggttccctc gatctcgacg
      121 gcgttcttgc aggcgcgcgg catcacgcgc ttcctccact gggtcgccac cgagggccag
      181 atcagcccgc ccgacgagat cgaggcggtc tccaagctgg agggcttccg cgaggcgacg
      241 ggcgcgctca aggacctctc cttcgacacc atcgccggcg ccgcctccaa cggggccatc
      301 gttcactatc ggccgacccg gcggctcaac aagcgcaccg aaaagggctc gctgctgctg
      361 gtggattccg gcgcccagta cctggacggc accaccgatg tgacccgcac cgtggcgatc
      421 ggcgaaccct cggcggagat gtgcgagcgc ttcaccctgg tgctcaaggg ccatctggcg
      481 ctggcccggg tgcggttccc cgccggcacc accggctcgg ccctggacgc gctggctcgt
      541 atggcgctgt gggctcacgg gctggactac gaccacggca ccggccacgg cgtcggctcc
      601 tacctcggag tccacgaggg gccgcatcgg atcgccaaat tgccgaatat ggtggccctg
      661 cgcccgggga tgatcgtctc caacgagccc ggcttttaca aggaaggcgc ctacggcatc
      721 cgcatcgaga ccctgcaatt cgtcaccgag gccgcgatga ttcccggcgg cgagcggccg
      781 atgctgggct tcgagaccct gacgctcgcg cccatcgacc ggcggctggt ggtcaaggcg
      841 atgatgaccg ccgaggagat cgcccagctc gacgcctatc acgcccgggt cctggcggtg
      901 gtcgggccgc aggttcccgc cgacgtcgcc gcctggctca aagacgcctg cgcgcccctc
      961 tgaccggggc ggcgacactc ttcagaacat caccgacctg cggcgccctg tcgcaggtct
     1021 tcgacgcgct tgtggcggcg gccgcagtct agagccgccg cagcaccgtc cttcgaaatt
     1081 tccagggtca gaatcatcta gccggcgctg tcgtttttcc gatgcccgcg acgcgacgac
     1141 acgatctctc agtcgattta gttcgctcta cttcattgct gaaatttaac gtgcaggtat
     1201 attaagaaga ctcaaagagc atccataagc ttaggttacg gacgtaacgc tgaagtccga
     1261 gattgttccg tggtctcggc gatccatgct cgcctgccac agcgagtatt tggtcggggt
     1321 gacttcgtcc gaccctagat taccaagcgt aacgcagggt cgttatgtgg ccattatgcg
     1381 acatattggc gaacgcatcg cgcaagactt tgaaatccgc gttgaccctg cattgcagtc
     1441 gtcgctaact ccaacacaat cagcgccgac ttggctctgg gctggcaact gttggggagc
     1501 ggacccgcct taattggccg gccgctggag gatttagacc ttgaatatcc ggaacacgcg
     1561 ggagcgcctg ctggcctcct caatgatc
//
LOCUS       DATAJL010000217         4454 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29163,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000217 DATAJL010000000
VERSION     DATAJL010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4454
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29163"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VHN39_04110"
     CDS             complement(<1..698)
                     /locus_tag="VHN39_04110"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX2815550.1"
                     /translation="MSAYKGVRIADFSQGVSGPMAAMLLGDFEAEVVKVEPPGGDRLK
                     DHPGYHAWNRNKQVVTLDLDAPEGLAAARELIAGADVALFSDPPGRLEALDLDAATLT
                     HVHPGLIHAWMPPYGVRGDWSNIPPHHSLLTALSGVAFRQGCYADQPVHLVLPLIWYG
                     QGVLGASAIGAALLERQRSGKGQAVTVSGLHGLSEVSGPVRVLDQPPLPRGAPLGASP
                     SYRLYECADGQWFFL"
     gene            complement(767..1615)
                     /locus_tag="VHN39_04115"
     CDS             complement(767..1615)
                     /locus_tag="VHN39_04115"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815551.1"
                     /translation="MIGRMMALACGLALMAGAARAEMVDVDGGQIYYETCGKGPQAIV
                     LIHDGVVNSASFDDMWPILCRDFRVVRYDRRGYGKSPAAKAAYSPQEDLAAVIAAAKM
                     DHVSLVGFSFGGGLAVSYAVLHPEQVDRLVISGAAINGFQPSPSFGKHVSRIMLPMII
                     GDMDAVVANAEKSGWVLAPGHPAAKAKALSILKESPQDLRHQMHDPIKGWPSDLPRLP
                     SLQVPTLIMTGDHDIADNQATSGAAQALIPGSRRIVIDDAGHLMQLEHPKEIAELIAD
                     FVRKGR"
     gene            complement(1666..1917)
                     /locus_tag="VHN39_04120"
     CDS             complement(1666..1917)
                     /locus_tag="VHN39_04120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2815552.1"
                     /translation="MAIVIRLDVMMARRKVRSNVLARAIGITEANLSLLKSGKVKGLR
                     FSTLEAICRFLDCQPGDILEFVPDETSKAEGFEALRRAS"
     gene            complement(1917..2513)
                     /locus_tag="VHN39_04125"
     CDS             complement(1917..2513)
                     /locus_tag="VHN39_04125"
                     /inference="COORDINATES: protein motif:HMM:NF022636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEX2815553.1"
                     /translation="MASVVDIAPPRPAPMPSFRKIRTASRAFEALFTALFVFFILLAV
                     LSLGMLLFYQGEVISFGPRGGMITTSGHPPPDFTPLGDWRVDQRLAYVPDVIVRAIPS
                     IYLFWCLRSLFRLYGQGQVFTARNATLIKAMGVCLIADAALPFLCHLVLSATGYEIDK
                     AWAHMAAVQELVLGAVVFVIALVMQAGREIEEDREGFV"
     gene            2626..3600
                     /locus_tag="VHN39_04130"
     CDS             2626..3600
                     /locus_tag="VHN39_04130"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2815554.1"
                     /translation="MRTATLGSLGEVSRLTLGGGGIGQIWGDTSHDEATATLRAALDA
                     GITVLDAAPMYRNCEAFIGETFAGRLPAGIKVTTKHQLGTPPPAEVEARLTASLEVSL
                     AAMKLERIDLFFLHSNIHLDDFTYAHGDANKDAFSTAWSTYVEAAAPAFARLKAQGRI
                     GGWGITGIGVPTAVLQAIGHTPRPDAIQAIANLMDSPGALKRYAEPARPREIAAAAKA
                     KGLGVMGIRAVQAGALTAAIDRTLSPNYPDSRDFDRAASFRALCARWGEDPALVAHRY
                     ALSMPNIDTVVLGVKNRQELAQCVAAEAMGDLDPAQMAAIDALGLAAV"
     gene            complement(3597..>4454)
                     /locus_tag="VHN39_04135"
     CDS             complement(3597..>4454)
                     /locus_tag="VHN39_04135"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEX2815555.1"
                     /translation="GLMEGLQPFLDDHEAKKFPADKVLYLCTGSQGEGRAALSRIADG
                     THPHVNLGAGDACVFSSRIIPGNEIPIRNLQDKLADRGVRLYTERDHPGIHVSGHPCR
                     DELAEMYRWARPEISVPTHGERRHLLEHAAFARDLQVPQQVTPRNGDMVRLAPGRAAI
                     VDEVPAGRLYVDGGMVTVENGDALRERRHAASNGVVAVSVVLDGKNKIVSGPQVRALG
                     LPSEPDYSLDDILDDLADEAEQALNRLKGQDRELDETVEAAMSRAVKKASQRIWGRRP
                     VVETTVLRL"
BASE COUNT          721 a         1522 c         1530 g          681 t
ORIGIN      
        1 aggaagaacc actggccgtc ggcgcattcg tagagccggt agctgggcga ggcccccagc
       61 ggcgcgccgc gcggcaaggg cggctgatcc agcacccgca ccggcccgga gacctccgac
      121 aggccgtgca ggccgctgac ggtaaccgcc tggcccttgc cgctgcgctg gcgttcgagg
      181 agcgcggcgc caatggccga agcgcccagc acgccctggc cgtaccagat gagcggcagg
      241 accaggtgta ccggctggtc ggcgtaacag ccttggcgga aggcgacgcc gctcagcgcg
      301 gtgagcaggc tgtggtgggg cggtatgttg ctccagtcgc cgcgcacgcc atagggcggc
      361 atccaggcat ggatcaggcc cggatggacg tgggtcaggg tggcggcgtc aaggtccagg
      421 gcttccaggc gtcctggcgg gtcgctgaac aaagcgacgt ccgccccagc gatcagctcc
      481 cgcgccgcgg cgagaccctc gggcgcgtcg aggtcgaggg tcaccacctg cttgttgcgg
      541 ttccaggcgt gatagccggg gtgatccttc agccgatcgc cgcccggggg ctcgaccttg
      601 accacctcgg cctcgaagtc gcccaacagc atcgccgcca tggggccgga caccccctgg
      661 ctgaaatcgg cgatgcggac tcctttgtag gcggacaccg gcgcggcctc ccctgccgct
      721 tgggctcatg aaagccgccc gcgcccggtt cggcaagcgc ccctgactac cggcccttgc
      781 gcacgaagtc ggcgatcagc tccgcgatct ccttgggatg ctccagctgc atcaggtgcc
      841 cggcgtcgtc gatcacgatc cgcctggacc ctgggatcag cgcctgggcc gccccggacg
      901 tggcctggtt gtcggcgatg tcgtggtcgc ccgtcatgat caatgtggga acctggaggc
      961 tgggcagccg cggcaggtcg gacggccagc ccttgatcgg atcatgcatc tggtgccgca
     1021 ggtcctgcgg gctttccttc aggatcgaca gcgccttggc cttcgccgct gggtggcccg
     1081 gcgccagcac ccagccggac ttctcggcgt tcgcgacgac ggcgtccatg tcgccgatga
     1141 tcatgggcag cattatgcgg ctgacgtgct tgccgaagct ggggctgggc tggaaaccat
     1201 tgatcgccgc cccggagatc accagccggt ccacctgctc cgggtgcagc acggcgtagc
     1261 tgaccgccag gccgccgccg aatgagaagc ccaccaggct gacgtggtcc attttcgccg
     1321 cggcgatcac ggcggccagg tcttcctgcg gcgaataggc cgccttggcc gccggcgact
     1381 tgccgtagcc gcgccggtca tagcggacga cgcggaagtc tcggcaaagg atcggccaca
     1441 tgtcgtcgaa gctggcggaa ttcaccactc cgtcatggat caggacgatg gcctgggggc
     1501 ccttgccaca ggtctcgtag tagatttggc cgccgtccac atcgaccatc tcggcccgcg
     1561 ccgcgccggc catcagggcc agtccgcagg caagcgccat cattcgcccg atcatcggtc
     1621 gttctccttg gttcaggtca ggggttcagg tctcggggta agagatcagc tggctcttcg
     1681 gagcgcttcg aaaccctcgg ctttcgacgt ctcgtcaggc acgaattcca ggatgtcgcc
     1741 cggctggcag tcgaggaagc ggcagatcgc ctccagggtg gagaagcgca gccccttcac
     1801 cttgccggac ttcagcagcg acaggttggc ctcggtgatc ccgatggcgc gggccagcac
     1861 attggagcgc accttgcgcc gggccatcat cacgtcgagg cggatcacaa tggccatcag
     1921 acgaacccct cgcggtcttc ctcaatctcg cggccggcct gcatgaccag cgcgatgacg
     1981 aacaccacgg cgcccagcac cagctcctgc accgccgcca tatgggccca cgccttgtcg
     2041 atctcgtagc ccgtggcgct cagcaccaga tggcagagga agggcagggc tgcgtcggcg
     2101 atcagacaga ctcccatggc cttgatcagg gtggcgttgc gggccgtgaa aacctgcccc
     2161 tggccgtaga gccggaacag cgaacggagg caccagaaca gatagatcga cgggatcgcg
     2221 cggacgatga cgtcgggcac ataggccagc ctctggtcga cgcgccagtc gccgagaggg
     2281 gtgaagtccg gcggcggatg gccggaagtg gtgatcatgc cgccgcgcgg gccgaacgag
     2341 atgacctccc cttggtagaa cagcagcatc cccaggctga ggacagccag gaggatgaag
     2401 aagacgaaca gcgccgtgaa cagcgcctcg aaagcccggc tcgcggtgcg gatcttgcgg
     2461 aagctgggca tgggcgccgg gcgcggcggg gcgatatcga cgacagaggc catggccggt
     2521 ctccttggga ctgaccgcag cgtcccgtat caattagttt ctgtcaaacg ataatctccg
     2581 cacatcgcct ggcgtgctaa ccttctgcga aacgggagga ccagaatgcg caccgccacc
     2641 ctcggaagtc tgggcgaggt cagccggctg acgctgggcg gcggcgggat cggccagatc
     2701 tggggcgaca cctcgcatga cgaggcgacg gcaacgctcc gggccgcgct ggacgccggg
     2761 atcacggtgc tggacgcagc cccgatgtac cgcaactgcg aggccttcat cggcgagacc
     2821 ttcgccggcc gcctgcccgc cgggatcaag gtcaccacca agcatcagct gggcacgccg
     2881 ccgccggccg aggtcgaggc gcggctcacg gcctccctcg aggtcagctt ggcggcgatg
     2941 aagctggagc ggatcgacct cttcttcctc cactccaaca tccacctcga cgacttcacc
     3001 tatgcccacg gcgacgccaa caaggacgcc ttctccaccg cttggtcgac ctatgtggag
     3061 gccgccgcgc cggccttcgc gcggctcaag gcccagggcc gcatcggcgg ctgggggatc
     3121 accggcatcg gggtcccaac cgcggtgctg caggcgatcg gccacacgcc gcggcccgac
     3181 gcgattcagg ccatcgccaa cctgatggac agccccggcg ccctcaagcg ctacgctgaa
     3241 ccggcccgcc cccgcgagat cgccgccgcc gccaaggcca agggtctggg cgtcatgggc
     3301 atccgcgccg tgcaggcggg cgcattgacc gccgccatcg accgcacgct gtcgccaaat
     3361 tatcccgaca gccgcgactt cgaccgcgcc gcaagcttcc gtgcgctttg cgcccgctgg
     3421 ggcgaggacc cggcgctggt ggcgcaccgc tacgcgctca gcatgcccaa tatcgacacc
     3481 gtggtgctgg gcgtgaagaa ccgccaggag ctggcgcaat gcgtggcggc cgaggccatg
     3541 ggtgacctgg atccggcgca gatggcggcg atcgacgccc tgggcctggc ggccgtctag
     3601 agtcgaagca ccgtcgtctc gacgaccggg cgccggcccc agatacgctg gctggccttc
     3661 ttcacggcgc gggacatggc cgcctcgacg gtctcgtcca gttcgcggtc ctgccccttg
     3721 agccggttca gggcctgttc ggcctcatcg gccaggtcgt cgaggatgtc gtcgagggaa
     3781 tagtcgggct cagacggcag gccgagcgcg cggacctggg gcccggagac gatcttgttc
     3841 ttgccgtcga gcacgaccga aacggcgacc accccatttg aggccgcgtg ccggcgttcg
     3901 cgcagggcgt caccgttctc cacggtcacc atgccgccgt cgacatacag ccgacccgcc
     3961 ggcacctcgt cgacgatcgc cgcgcggccg ggagccaggc ggaccatgtc gccgttgcgc
     4021 ggcgtcacct gctgcggaac ctgcaggtcg cgggcgaagg cggcgtgttc caagaggtgg
     4081 cgccgctcgc cgtgcgtggg gacagagatc tcgggcctgg cccagcggta catctcggcg
     4141 agctcgtcgc ggcacgggtg gccggagacg tggatgcccg ggtggtcgcg ctcagtgtag
     4201 agtcgcaccc cgcggtcggc gagcttgtcc tgcaggttac ggatcgggat ctcgttgccc
     4261 ggaatgatcc gcgaggaaaa gacacaagcg tcgcccgcgc ccaggttcac gtgcggatgg
     4321 gtgccgtcgg cgatgcgcga cagggcagcc ctgccctcgc cctggctgcc ggtgcagagg
     4381 tagaggacct tgtcggcggg aaacttcttg gcttcgtgat cgtcaaggaa gggctgcagg
     4441 ccctccatca ggcc
//
LOCUS       DATAJL010000218         3470 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117481,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000218 DATAJL010000000
VERSION     DATAJL010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3470
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117481"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..583
                     /locus_tag="VHN39_04140"
     CDS             <1..583
                     /locus_tag="VHN39_04140"
                     /inference="COORDINATES: protein motif:HMM:NF013858.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HEX2815556.1"
                     /translation="FSYSHGLETVIRDGTIADADTLSAWIAGLIEHGSGWTDAVLFKA
                     AWEANAEGLAEVAELAAALMPCLERRRETLGQGEAFLIAARAWGPPPLSGAVAYPVAV
                     AAVTAAANIPLETALTAWLHAFAANLVSVAVRAVPLGQTYGVAVIADLEPVILAAAAR
                     AAASSLDDLGASALLSDIAAMRHETLGVRLFIS"
     gene            580..1230
                     /gene="ureG"
                     /locus_tag="VHN39_04145"
     CDS             580..1230
                     /gene="ureG"
                     /locus_tag="VHN39_04145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HEX2815557.1"
                     /translation="MSRPPSSRNGPLRVGIGGPVGSGKTTLVEKLCKQMRDRWSVAVV
                     TNDIYTQEDALILNRLQALPEDRILGVETGGCPHTAIREDASINLAAIAEMNRRHPDL
                     DVIFIESGGDNLAATFSPDLADLTIYVISVCQGEKIPRKGGPAITRSDLLVINKTDLA
                     PHVGADLSVMRSDTAKARGERPYVFTDLTRLVGVGEVAGFIAQAGGLPTPLVSEVA"
     gene            1232..2260
                     /locus_tag="VHN39_04150"
     CDS             1232..2260
                     /locus_tag="VHN39_04150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815558.1"
                     /translation="MRAAALILAAVLTLATAASAAPAKLFSPPRTADGHPDLSGVWSN
                     ASITKLTRASGMTKLALTAAEAKKLATADPMVRRQSADATPSDAAEGAPTPGNPGGYN
                     GFWLDPGSTYGQVKGEYRTSWIVDPADGQLPFSDAGKKLVREANTYARLADTPAGPDS
                     LEPWDRCLISSRGSGGPGMLNNIYNSNLQIVQTPGSVAIVIEMIHDARNVPIFPSKAA
                     AQAAHGPAVLHLWLGDSVGWWEGDTLVVETINVNAEQGRAGPIFLTPRARVTERFSRA
                     SAGQIFYEFQVEDPVYYTKPWRAEMSLNALKDQLFEYACHEGNYALVDILRGVRAAET
                     KSAATGGR"
     gene            2260..3201
                     /locus_tag="VHN39_04155"
     CDS             2260..3201
                     /locus_tag="VHN39_04155"
                     /inference="COORDINATES: protein motif:HMM:NF015056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HEX2815559.1"
                     /translation="MATPAYTIHRDCCHLGWDNALPPVLTVAPGTTIAFECQDASAGQ
                     LTAASTVADVATLDFGRINPVTGPVFIDGAEPGDAVKITLDAFAPSGFGWTANIPGFG
                     LLADQFPDPALHLWTYDKVGMGPAAFSPVGRVPLKPFAGTIGLALAEPGLHSVVPPRR
                     VGGNLDIRDLSAGVTLYLPVEAPGGLFSIGDTHAAQGDGEICGTAIESPMSVTLTLDL
                     IKDARLAAPRFTTAGPVTRHLDTRGYEVTTGVGPDLMTGAREAVSRMVDLLCATQGLQ
                     PVEAYMLCSVCGDLRISEIVDLPNWIVAFYFPRIVFD"
BASE COUNT          534 a         1327 c         1104 g          505 t
ORIGIN      
        1 cttcagctat tcgcatgggc tggagacggt gatccgcgac gggaccatcg ccgacgccga
       61 caccctctcg gcctggatcg ccggcctgat cgagcacggc agcggctgga ccgacgcggt
      121 gctgttcaag gccgcctggg aggccaatgc cgagggcctg gcggaagtcg ccgaactggc
      181 cgccgcgctc atgccctgcc tcgaacgccg ccgcgagacg ctcggccagg gcgaggcctt
      241 cctgatcgcc gcgcgggcct gggggccgcc gccgctcagc ggcgccgtgg cctatcccgt
      301 cgcggtcgcc gccgtgacgg ccgccgccaa catcccgctg gagacggcgc tgaccgcctg
      361 gctccacgcc ttcgccgcca atctggtcag cgtcgccgtg cgcgccgtac ccctgggaca
      421 gacctatggc gtggcggtca tcgctgacct ggaaccagtc atcctggccg ccgcggcccg
      481 cgcggccgca tcttcactgg acgacctcgg cgcatccgcg cttttgtccg acatcgccgc
      541 catgcggcac gaaaccctcg gcgtaaggct cttcatctca tgagcaggcc cccctccagc
      601 aggaacggcc ccttgcgcgt cggcatcggc ggcccggtgg gctccggcaa gaccacgctg
      661 gtcgaaaagc tctgcaagca gatgcgcgac cgctggtccg tcgccgtcgt caccaacgac
      721 atctacaccc aggaggatgc gctcatcctc aaccgcctgc aggcgctccc ggaagaccgc
      781 atcctgggcg tcgagaccgg cggctgcccg cacaccgcca tccgcgagga cgcctccatc
      841 aacctggcgg ctatcgccga gatgaaccgg cgccatcccg acctcgacgt gatcttcatc
      901 gagagcggcg gcgacaacct ggccgccacc ttttccccgg acctcgcgga cctgacgatc
      961 tatgtgatca gcgtctgcca gggggagaaa atcccccgca agggcggccc ggccatcacc
     1021 cgatcggatc tgctggtgat caacaagacc gacctcgccc cgcatgtggg cgccgacctt
     1081 tccgtcatgc gcagcgacac ggccaaggcc cgcggcgagc gcccctacgt cttcaccgat
     1141 cttacccgac tggtgggggt gggcgaggtc gcgggcttca tcgcccaggc tggcggcctg
     1201 ccgacgccgc tcgtgagtga ggtggcctga gatgcgcgcc gcagccctga tcctcgccgc
     1261 cgtcctgacg ctcgcaaccg cggcgtccgc cgccccagcg aaactgttct cgccgccccg
     1321 cacggctgac ggccacccgg acctttccgg cgtctggagc aacgcctcga tcaccaagct
     1381 gacccgcgcc tccggcatga ccaagctcgc gctcaccgcc gccgaggcca agaagctggc
     1441 taccgccgac cccatggtgc gccgccagtc cgccgacgcc acgccctccg acgccgccga
     1501 aggcgcgccc acccccggca accccggcgg ctacaacggc ttctggctcg accccggttc
     1561 cacctacggg caggtgaagg gcgaatatcg cacctcctgg atcgtcgacc ccgcggacgg
     1621 ccagctgccc ttttccgacg ccggcaagaa gctggtgcgc gaggccaaca cctacgcccg
     1681 tctggccgac acgccggccg gccccgattc cctcgagccc tgggaccgct gcctgatctc
     1741 ctcgcggggc tccggcggcc cgggcatgct caacaacatc tacaattcga acctgcagat
     1801 cgtgcaaacc ccgggctcgg tggcgatcgt catcgagatg atccacgacg cccgcaacgt
     1861 cccgatcttt ccctccaagg ccgccgcgca ggccgcgcac ggccccgccg tcctgcatct
     1921 ctggctgggc gattccgtcg gctggtggga aggcgacacc ctggtggtcg agacgatcaa
     1981 cgtgaacgcc gaacagggcc gcgccgggcc gatcttcctg acccccaggg cccgggtgac
     2041 cgagcgcttc agccgcgcct cggcgggcca gatcttctac gagttccagg tcgaggaccc
     2101 ggtctactac accaagccct ggcgggcgga gatgagcctc aacgcgctca aggaccagct
     2161 cttcgaatac gcctgtcacg agggcaacta cgcgctggtg gacatcctgc gcggcgtccg
     2221 cgcggcggag accaagtcgg cggcgaccgg cggccgctga tggcgacgcc cgcctacacg
     2281 atccaccgcg actgctgcca cctgggctgg gacaacgcct tgccgccggt gctgaccgtg
     2341 gcgccgggga ccaccatcgc cttcgagtgc caggacgcct cggccggcca actcaccgct
     2401 gccagcaccg tggccgacgt ggccaccctc gacttcggcc ggatcaatcc ggtcaccggc
     2461 cccgtgttca tcgacggcgc cgagccgggc gatgcggtga agatcacact cgacgccttc
     2521 gcgccctccg gcttcggctg gaccgccaac atcccgggct ttggcctgct ggccgaccag
     2581 ttcccggacc ctgccctgca cctgtggacc tacgacaagg tgggcatggg cccggcggcc
     2641 ttctcgccgg tcggtcgtgt gccgctgaag cccttcgccg gcaccatcgg cctcgccctg
     2701 gcagagcctg gcctgcactc ggtcgtgccg ccccggcgag tgggcggcaa cctcgacatc
     2761 cgcgacctct cggccggcgt caccctctac ctgcccgtcg aggcgcccgg cggcctcttc
     2821 tccatcggcg acacccacgc ggcacaaggc gacggcgaga tctgcggcac cgccatcgag
     2881 agcccgatgt cggtcaccct gaccctggac ctgatcaagg acgcccggct cgccgcgccg
     2941 cgcttcacga cagctgggcc cgtcacccgc cacctggaca ccaggggcta cgaggtcacc
     3001 accggcgtcg gccccgacct gatgaccggc gcccgcgaag cggtgagccg catggtcgat
     3061 ctcctctgcg cgacccaggg cctgcagccg gtcgaggcct acatgttgtg ttcggtctgc
     3121 ggggacctga ggatcagcga gatcgtcgac ctgcccaact ggatcgtcgc cttctatttc
     3181 ccgcgcatcg tattcgacta ggtcgcgcac tcataaggtg accgcggcga cggcggcgcg
     3241 ggcgtgcgac cgggcccggc gcgtggccgg caagcggaca atctgaatga ccaaggtggg
     3301 tggatagcgg acagtggctc cgcacccgaa agcggacccg ctgagcgtcc gctttggggg
     3361 gaaagcggac gttggctgct ccgagccctc agggcgaatg tggacggctg ggccgtgcgg
     3421 gcttaaattc ccgcgcagcc caacggaaaa tgggagcccc tgatgcgtgc
//
LOCUS       DATAJL010000219         1779 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_3586,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000219 DATAJL010000000
VERSION     DATAJL010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3586"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1528)
                     /locus_tag="VHN39_04160"
     CDS             complement(<1..1528)
                     /locus_tag="VHN39_04160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX2815560.1"
                     /translation="MVFLSGDRPGARPLARFLRAGVAPSWADVIAFVLLAATAVLIVR
                     GAGEMSEPLSRLRTTPVTLDPARLPEYALLTTLRMFAALGASLLFTFTVATLAAKNAK
                     AGLIIVPALDILQSVPILGFLTFTVTFFMGLFPGRQLGVECAAIFAIFTSQAWNMAFS
                     FYQSLRTIPNDLDEVSRQFGFSPWRRFVRLELPFATPGLVWNVMMSMSGGWFFVVASE
                     AITVGKTTIALPGIGSWLALAILRQDMRSVAIGVGAMAVVILLYDQLVFRPIVAWADK
                     FRFEQTASQDRPGSWVYDLVRRVRWLRMAVAPLSWPARALTAIDWPIPRLKLQPVRLG
                     PQTSRVLDGLWLALVGVAAVAAVWFLWTFLARSLNWRDAYVAFGYGLATLTRVVVLIA
                     LTSLIWVPIGVWIGLRPAWAERLQPIAQFLAAFPANVLFPFVVVLIVATHADPNIWLS
                     PLMVLGTQWYILFNVIAGASAIPSDLKEAAGIFGVRGWQWWRQVALPGIFPYYVTGAI
                     T"
BASE COUNT          341 a          576 c          647 g          215 t
ORIGIN      
        1 cggtgatggc gccggtcacg tagtagggga agatgccggg caaggcgacc tgacgccacc
       61 attgccagcc gcgcaccccg aagatgccag cggcctcctt gaggtcgctg gggatggcgc
      121 tggcgcctgc gatgacgttg aacaggatgt accactgggt gcccagcacc atcagcggcg
      181 acagccagat attggggtcg gcgtgggtcg ccacgatcag cacgacgacg aacgggaaga
      241 gtacgttggc cgggaaggcg gccaggaact gggcgatggg ctgcaggcgc tcggcccagg
      301 cgggcctgag gccgatccag acgccgatgg gcacccagat gaggctggtc agcgcgatca
      361 gcacgaccac gcgcgttaac gtcgccaggc cgtagccgaa ggccacatag gcgtcgcgcc
      421 agttcaggct gcgggccagg aaggtccaga ggaaccagac ggccgcgacg gccgccacgc
      481 cgaccagggc cagccacagg ccgtcgagga cgcgcgaggt ctgcggcccc aggcgcaccg
      541 gctgcagctt cagccgcggg atcggccagt cgatcgcggt gagcgcgcgg gcgggccagg
      601 agagcggcgc cacggccatc cgcagccagc gcacacggcg cacgagatca tagacccacg
      661 agcccggccg gtcctgcgag gcggtctgct cgaagcggaa cttgtcggcc caggcgacga
      721 tggggcggaa aaccagctgg tcatagagca ggatcaccac cgccatggca ccgaccccga
      781 tggccacgga ccgcatgtcc tgccgtagga tggcgagcgc cagccaggac ccgatgcccg
      841 ggagcgcgat ggtggtcttg ccgaccgtga tcgcctccga cgccacgacg aagaaccagc
      901 cgcccgacat cgacatcatc acgttccaga caaggcccgg tgtcgcgaac ggcagctcca
      961 gccgcacgaa ccgccgccag ggcgagaagc cgaactggcg ggagacctcg tccaggtcgt
     1021 tcgggatggt gcgcagcgac tggtagaagc tgaaggccat gttccaggcc tggctggtga
     1081 aaatcgcgaa gatcgcggcg cactcgacgc ctagctgacg gccgggaaac agccccatga
     1141 agaaggtgac cgtgaaggtc aggaacccca ggatcggcac cgactgcagg atgtccagcg
     1201 ccggcacgat gatcagtccg gccttcgcgt tcttggccgc tagggtggca acggtgaagg
     1261 tgaacagcag agaggcgccg agcgcggcga acatgcgaag cgtggtgagc agggcgtatt
     1321 ccggcaggcg cgccggatcg agggtgaccg gggtggtgcg cagccgcgac aggggctcgc
     1381 tcatctcgcc cgcgccgcgc acgatcagga ccgccgtggc ggccagcagc acgaaggcga
     1441 tgacgtccgc ccaggagggc gcgacacccg cgcgcaggaa ccgcgcgagc gggcgcgctc
     1501 caggccggtc tccggagagg aataccatgg ctcacctcgt ggacgccgcc gacgtgcgcc
     1561 acgggtcgag cctgatgcca ggccctagcg ggacgctctc ggcggcgcgt tagatcgact
     1621 gctactgtcg cttggcatca gtgggattcc ggtgggatcg gccatccccc tggggaggat
     1681 actcgacaag gggcgaaatg agcctcatcg cggcgactgt caaggcgcat tcggcgctgt
     1741 cgcgcaggct caccaatggc gcgcagggag ccgttccga
//
LOCUS       DATAJL010000220         2525 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79050,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000220 DATAJL010000000
VERSION     DATAJL010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79050"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1..108
                     /locus_tag="VHN39_04165"
                     /pseudo
     CDS             1..108
                     /locus_tag="VHN39_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004279658.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
     gene            complement(146..955)
                     /gene="rutA"
                     /locus_tag="VHN39_04170"
                     /pseudo
     CDS             complement(146..955)
                     /gene="rutA"
                     /locus_tag="VHN39_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518261.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
     gene            complement(1028..1957)
                     /locus_tag="VHN39_04175"
     CDS             complement(1028..1957)
                     /locus_tag="VHN39_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2815561.1"
                     /translation="MPQGSTRVVLTALAGNGAIALAKFVAAGLSGSTAMFTEAIHSLV
                     DTGDQLLLLVGQTRGRRKPDDSHPLGYGMEVYFWSFVVALMVFVLGGMFSIYEGVRHI
                     IQPSPLVSPWISLGVLAVSAVFEGISFRVGYREYKRVVRGSPIRLWAFIKGSKDPGLV
                     SVLLEDSAALIGIVLAAVGVAASSFLHIAWADGAASVAIGLLLTGVAFVLANETRSLI
                     AGESVAPIVMERLKETLDRISCITHLDEIATLHLGPGAILVALTLAFRPKATSTSIDA
                     AIVEITQCLQATDGRVAYVYVRPSRKDQAKTGG"
     gene            complement(2041..2496)
                     /locus_tag="VHN39_04180"
     CDS             complement(2041..2496)
                     /locus_tag="VHN39_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815562.1"
                     /translation="MRSVILAAGLFAALGLSACDSSKTADTAAPAAPAPPKYVGRSQQ
                     MYAGQEMISKVATASIKVGNGALEMTASGSAASPGYTKSGFLNRINAGAPKDGIYEVD
                     VVADKPATAAAAETPIEVKGAWSGYPADHLKGVKFISKTNSVVAMLPAG"
BASE COUNT          429 a          827 c          852 g          417 t
ORIGIN      
        1 atcctcttca tgatcatcgc cgatgagacc gacgagaagg ccatggccaa gtggcagctc
       61 taccgcgagg gcgccgacca gggcgcgctg gcgtggctca cgaaccaggc ggcgcccaac
      121 gcccagggcg gcgccaacac caacaccacg ccagcgcgcc ctggtcggcg ccctcgcggt
      181 agagctgcca cttggccatg gccttctcgt cggtctcatc ggcgatgatc atgaagagga
      241 tgtaggagcc aacatcgcgg ccggtcttgg ccttggccgc cgccagccgg gtgttgacgg
      301 gggcgaaggc ggcgggcgtg ttggtccctt tgccgagcgc gaaggaatag tccgcatact
      361 gagcggtgaa ggccaggccc tcgtcgctgg agccggcgca gatgatcttc acgccgtgcg
      421 gcctggggct gacgcggcag tcctgcatct gcaggtactg gcccttgaag tcgctgacgc
      481 cggtttccat cagctccttc agcacggtcg cgtattcggc caggtagttg tagcggtcct
      541 tgtagtggct ctcgccgggc cacaggccca tctggtcgta ctcggccttc tgccagccgg
      601 tgatcagatt gatgccgaag cgcccgggtc ccgcgatgga atcgatggtc gacgccatgc
      661 gcgccacgat cggcgccggc atggtgagcg tcgcggcggt ggcgaagatc ttgatcttgc
      721 tggtgaccgc ggccagaccc gccatcaggg tgaagctctc caggttgtgt tcccagaact
      781 ccgtcttccc gccgaaaccg cgcagcttga tcatcgagag cgcgaagtcg aagccgtact
      841 tctccgcctt ctgaacgatg gtcttgttga gctcgaagga cggcatgtac tgcggcgacg
      901 tctcggagat cagccagccg ttgttgccga taggaatgaa gacgccgatg tccatttgag
      961 cccttgtcgt aggtgcgcgg acgccgatca cgcacgcaat tgaacgacat ttgcaagccg
     1021 ccaggagtca gccgccggtc tttgcctgat ccttgcgcga tggacggaca tagacgtagg
     1081 cgacccggcc gtccgtcgcc tgcaggcact gggtaatctc gacgatcgcc gcgtcgatcg
     1141 aggtgctggt ggccttgggc cggaaggcca gcgtcagggc caccaggatc gcgcccgggc
     1201 ccagatgcag ggtggcgatc tcgtcgaggt gggtgatgca gctgatccgg tccagggtct
     1261 ccttgagccg ctccatgacg atcggcgcca cgctctcgcc ggcgatcagg ctgcgggtct
     1321 cgttggcgag cacgaaggcg acgccggtca agagcaggcc gatggcgacc gacgccgccc
     1381 cgtcggccca ggcgatatgc aggaagcttg aggccgcgac gccgacggcc gccaggacga
     1441 tgccgatcag ggccgcggaa tcctccagaa ggaccgagac caggcccggg tccttggacc
     1501 ccttgatgaa cgcccagagc cggatcgggc tgccgcgcac cacgcgcttg tactcgcggt
     1561 agccgacccg gaaggagatc ccctcgaaga ccgccgagac cgccagcacc cccaggctga
     1621 tccagggcga gaccaggggc gagggctgga tgatgtgccg cacgccctcg tagatcgaga
     1681 acatcccgcc cagcacgaag accatcaggg cgacgacgaa cgaccagaag tagacctcca
     1741 tgccgtagcc cagggggtgg ctgtcgtccg gcttgcgccg cccgcgcgtc tggccgacca
     1801 gcagcagcag ctggtcgccg gtgtcgacca gggagtggat cgcctcggtg aacatcgcgg
     1861 tcgagccgga aaggccggcg gcgacgaact tggcgagcgc gatggccccg ttgccggcca
     1921 gcgcggtcag aaccacccgt gtcgagccct gaggcatgat ccgctccgcg atcccgccca
     1981 atctcaagaa aggggatcac gacgcgatca gggcgccggc gtcaacggcc ctgtgggccc
     2041 tcagccggcc ggcagcatgg cgaccaccga attggtcttg gagatgaact tcacgccctt
     2101 caggtgatcg gccggatagc ctgaccaggc gcccttcacc tcgatgggcg tctcggccgc
     2161 ggcggcggtc gccggcttgt cggcgaccac gtccacctca tagattccgt ccttgggcgc
     2221 gccggcgttg atgcggttga ggaatcccga cttggtatag ccgggtgagg ccgcgcttcc
     2281 gctggccgtc atctccagcg ccccattgcc caccttgatg gacgcggtgg cgaccttgga
     2341 gatcatctcc tggcccgcgt acatctgctg cgagcggccc acatatttgg gcggcgccgg
     2401 cgcagcgggc gcggccgtgt cggcggtctt ggatgagtca caggctgaaa ggccgagcgc
     2461 ggcaaagaga ccggcggcca ggatcacgct acgcatggat atcctcccct ttttccctat
     2521 tgggc
//
LOCUS       DATAJL010000221         3119 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_16398,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000221 DATAJL010000000
VERSION     DATAJL010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3119
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16398"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..388
                     /locus_tag="VHN39_04185"
     CDS             <1..388
                     /locus_tag="VHN39_04185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0031992 - energy transducer activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEX2815563.1"
                     /translation="PPLPVPPVEHRIEQPKPPAPPPPEPPRPSVITNADWLRKPTSDD
                     MAKYYPERATRMNIEGRATLSCTVNARGTLDSCSVSAEEPSEAGFGDAAMKLSKLFKM
                     RPQTKDGAPVDGGKINIPIRFQLPKG"
     gene            526..1365
                     /locus_tag="VHN39_04190"
     CDS             526..1365
                     /locus_tag="VHN39_04190"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX2815564.1"
                     /translation="MSQAEDARPIGGLDRVAADARADLTFTGVVAAVLVIFLYFNALN
                     VADEYRRGGHALGLWEPMVWEGTSGIFFLAVSPLVTALTRRNWPTRPPWVRKIAVHAI
                     AAVLMSLAHVLAIGAARWSVYRLVGGYYDPFGPLGNWPYEFRKDLLVYASMVTIYVVW
                     RTLRSRAQPVGEASPDVLEVRDGARRHFVPLSDVVWVEAAGNYVELHRGGAGLLHRAS
                     LSEMERRLHSAGFVRIHRSRLVRREAVADVESKPTGDFVVRLRDGRELAGSRRYRRPL
                     LAD"
     gene            1456..1532
                     /locus_tag="VHN39_04195"
     tRNA            1456..1532
                     /locus_tag="VHN39_04195"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1490..1492,aa:His,seq:gtg)
     gene            complement(1556..2836)
                     /locus_tag="VHN39_04200"
     CDS             complement(1556..2836)
                     /locus_tag="VHN39_04200"
                     /inference="COORDINATES: protein motif:HMM:NF016150.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HEX2815565.1"
                     /translation="MATTTSAAPSDRHLSIDAVRGFAVLGILLMNIVGMGLPSFAYID
                     PTYAGGSTGADFWTWAVNNVLTDGKMRALFTMLFGASTVLIAERAEGGQPGPAQTHYR
                     RMFWLFVFGMVHAYFLWWGDILVTYALAGLVIFPFRRLAPRMQIGIGVAVLAALLGLN
                     LLEAHQLTAMHAAAVAPGATAAAVKGWQEASQIVAPPLAMKGQEIAGFGGGFMDALRA
                     RTKVALLLQTILMPTGEIPEAIGQMFLGMALFRMGFFTLKWSSRAYGWMIAVGYLAAV
                     PATAWLAWKIAQSDFDPLVLNRLEAWQQVTRPLIGLAHASVILLLCRAAVAPAVVNRL
                     AAAGRMAFSNYLMTSIITTLVFCGFGFGLYGRLSRFGELAVVAGVWVFILVWSKPWLA
                     RFHYGPFEWAWRSLVRWSPQPFVRTNSAAAEAAV"
BASE COUNT          523 a         1074 c         1037 g          485 t
ORIGIN      
        1 cccgcccctg ccggttccgc cggtggaaca caggatcgag cagccgaagc cgccggcccc
       61 gccgccccct gagccgccgc gtccgtcggt gatcaccaac gcggactggc tgcgcaagcc
      121 gacatcggac gatatggcca agtattatcc ggaacgtgcg acccggatga acatcgaggg
      181 aagggcgacg ctgagctgca cggtcaacgc ccgtggcacg ctcgactcct gttcggtttc
      241 cgcggaggag ccgtctgagg caggcttcgg cgacgccgcg atgaagctga gcaagctctt
      301 caagatgcgt ccgcagacca aggacggcgc gcctgtggat ggaggcaaga tcaacattcc
      361 gatccgcttc cagctgccga agggctgata cgctccaaga cgatcaggaa caggccccgg
      421 agcgcgagct ccggggcttt ttctttgttc ggatggtccc ttcacagggg atcgcaggcg
      481 aaccattctg ctccccgcgt cgaatcccgg tgtgaaggaa cggcattgag ccaggcagag
      541 gacgctcgac ccatcggcgg cctggatcgc gtcgcggccg acgcgcgcgc ggacctgacc
      601 ttcaccggcg tcgtcgccgc ggtgctggtg atcttcctct atttcaacgc cctgaatgtc
      661 gccgacgagt accggcgcgg cggccatgcg ctcggcctat gggagcccat ggtctgggag
      721 ggaacgagcg ggatcttctt cctggcggtc tcgccgctgg tgacggccct cacgcgccgc
      781 aactggccga cccggccccc atgggtccgg aagatcgccg tccatgcgat cgccgccgtc
      841 ctcatgtcac tcgcccatgt cctggcgatc ggtgcggccc gctggagcgt ctatcgcctc
      901 gtgggcgggt actacgatcc cttcggcccg ctcggcaact ggccctacga attccgcaag
      961 gacctgctgg tctacgcttc catggtgacc atctacgtcg tctggcggac ccttcgttcg
     1021 cgcgcccagc ccgtcggaga ggcctcgccc gacgtccttg aggtgcgcga cggcgcccgg
     1081 cgtcatttcg tgccgctgag cgacgtggtc tgggtcgagg ccgccggcaa ctatgtcgag
     1141 ctgcaccgcg gcggcgccgg actgctgcat cgcgcctcgc tgtcggagat ggagcgccgg
     1201 ctgcattcgg cgggcttcgt gcgcatccat cgctcgcgcc tggtgcgccg tgaggcggtg
     1261 gcggatgtgg agtcgaaacc caccggggat ttcgtcgtgc gcctgcgtga cgggcgcgaa
     1321 ctggccggca gccgccgcta tcgccgcccg ctgcttgccg attgaatcgc cgcagggaat
     1381 ggccgatccc ccagagactt gatggggcga cttgatcgca aagcggcgcg cgactagaaa
     1441 cccccctcgc gatgcgccgg cttagctcag ttggttagag cgctagattg tggatctaga
     1501 ggtcctcggt tcgagcccga gagctggtac catcgcgaag accccaacat cgccctcaaa
     1561 cagccgcctc agccgcggct gagttcgtgc gcacgaacgg ctgcgggctc cagcggacca
     1621 gcgagcgcca ggcccattcg aacgggccat agtggaagcg cgccagccag ggtttgctcc
     1681 agaccaggat gaagacccag acgccggcca ccaccgccag ctccccgaac cgcgacaggc
     1741 ggccatagag cccgaagccg aacccgcaga acaccagcgt cgtgatgatc gaggtcatta
     1801 gatagttcga gaacgccatc cgcccggccg ccgccagccg gttgaccacg gccggcgcca
     1861 cggcggcgcg gcagagcaac aggatgacgc tggcgtgcgc caggccgatc agtggccggg
     1921 tgacctgctg ccaggcctcc aggcggttca gaaccaaggg atcgaaatcg gactgggcga
     1981 tcttccaggc gagccacgcg gtggcgggaa cggcggccag gtaccccacg gcgatcatcc
     2041 agccataggc gcggctcgac cacttcaggg tgaagaagcc catcctgaag agggccatcc
     2101 ccaagaacat ctggccgatc gcctcgggga tctcgccggt cggcatgagg attgtctgca
     2161 gcagcagggc gaccttggtc cgcgctctca gcgcatccat gaagccgccg ccgaacccgg
     2221 cgatctcctg gcccttcatg gcgagcggtg gggcgacgat ctgcgacgct tcctgccagc
     2281 ccttcaccgc cgccgctgtg gcgccgggcg cgaccgccgc ggcgtgcatg gcggtgagct
     2341 ggtgcgcctc gagcaggttg agccccagca gcgccgccag gacggccacg ccgatgccga
     2401 tctgcatgcg cggagccagc ctccggaaag gaaagatgac aagtccggcc agcgcatagg
     2461 tgaccaggat gtcgccccac cacaggaagt aggcgtgaac catgccgaac acgaacagcc
     2521 agaacatccg tcggtagtgg gtttgcgcag gaccgggctg gccgccctcg gcccgctcgg
     2581 cgatcagcac cgtgctggcc ccgaaaagca tggtgaacag cgcccgcatc ttgccgtcgg
     2641 tcagcacatt gttgaccgcc caggtccaga agtccgcgcc cgttgatcca cccgcgtagg
     2701 tcgggtcgat gtaggcgaac gacggcaacc ccatcccgac gatgttcatc agcaggatgc
     2761 ccagcacggc gaagccgcgc accgcgtcga tggacaggtg gcggtcgctt ggcgccgcgc
     2821 tggtcgttgt ggccatctgc gaattccccc gcaacttcct agggcgccga ggatgggcgc
     2881 tcgccggatg ctgtcaacgg atacggccgc gccggttttt gagggcgcgg cgtggccgag
     2941 gcgtcgcgcc atgctaaacc catgcgcgaa tccggctgcc gtggcggcca ccgcaacgga
     3001 gatcgcccgg tgaagcgtct gccctggatc ggacttgccg ccgcggccgc cctgttggcg
     3061 tcctgtaatc gccccgccga tccgaccagg gcgtcgtccg cgcctgtcgc cgtaggccc
//
LOCUS       DATAJL010000222         2951 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91760,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000222 DATAJL010000000
VERSION     DATAJL010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91760"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..1556
                     /locus_tag="VHN39_04205"
     CDS             117..1556
                     /locus_tag="VHN39_04205"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEX2815566.1"
                     /translation="MSQADRKAASLDPDDWGDLRAQGHRMLDDMFDNLETVAQRPLWQ
                     APTSDQRARYRAELPRTPGRLEDAHAQFMADVAPYGSGNRHPGFMGWVQGGGTAVGML
                     AEMLAGGLDANLGGRDHMPIEVERQVALWMAELFGFGPEASGIFLTGTSLANLCAVLV
                     ARDRALGADVRHTGVRDVRVVAYASKGVHSCIVRAMDMTGLGWDRLRLIETDADHAIS
                     LPALEAAIAADRAQGLKPFLIVGTAGSVDVGAIDDLSGLADIAAREGAAFHVDGALGA
                     LGVLTPEVAPRLKGIERADSLALDFHKLAQVPYDAGFLLVRDAAAHKRTFTYSEAAYL
                     RHAERGLAGGEWWPCDFGPDLSRGFRALKVWFSLKTYGLDALGAVIGRACDLAAELAA
                     RIEASPELELLAPVGLNIVCFGYVGGDNAAIAADLQEAGRVAPSTTTLNGKTAIRAAI
                     VNHRTGPEDIAALVEGVLALGRARAAAKA"
     gene            complement(1524..2741)
                     /locus_tag="VHN39_04210"
     CDS             complement(1524..2741)
                     /locus_tag="VHN39_04210"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing
                     glycosyltransferase family protein"
                     /protein_id="HEX2815567.1"
                     /translation="MQVEIEDGSFEQGAELQKASQFAEAAEVYQRLADKVLTVNLAIN
                     LGICLTEIGAFPRAQHYLGLAVRERPNNVDVRRLLGFAYAEGGRTDLAEAEYLTVLAA
                     KPGDERTMLALGGLYLSLGRYAEGWPLLATRVALHPDVVPPIALAFPEWRGEPLTGKS
                     VLIWTEQGFGDQIQMARFTRDLKARGASRVTLGCRPPLAHLFSTLESVDVVIPVAAHT
                     KVAVGVHDYWSRCFSLPERLGVTLETLPTQPYLSAPADRRARWAGFGKGARAGLIWQV
                     SATGFNAPHKRLPRDVAQRLLDRGVISLEPEDTGAQDFADTAAIIEGLDLVISVDTAT
                     AHLAGAMGKPCWTLLPYVRCDWRWLRDRTDSPWYPTMKLYRQTTPRDWTGSVDQVLRD
                     LAASGLGGGSGAA"
BASE COUNT          429 a         1034 c         1066 g          422 t
ORIGIN      
        1 ggcctgtgca agcgcctgag acgatcccag gggtttcggc gcgcggcggc cacggatatt
       61 gggtctgcgc ggatcgatcg taatcggaac cgcagcgatt cgaacctgga gcgcccatga
      121 gccaagcgga ccgcaaggcg gccagcctcg accccgacga ttggggcgac ctgcgcgcgc
      181 agggccaccg gatgctggac gacatgttcg acaacctcga gacggtggcg cagcggccgc
      241 tctggcaggc gccgacgagc gaccagcggg cccgctaccg cgccgaactg ccgcgcaccc
      301 cgggccggct ggaggacgcc cacgcccaat tcatggccga cgtggcgccc tatggctctg
      361 gcaaccgcca tccgggcttt atgggctggg tgcagggcgg cggcacggcg gtgggcatgc
      421 tggccgagat gctggcgggc ggtctcgacg ccaacctcgg cggccgcgac cacatgccca
      481 tcgaggtgga gcgccaggtg gcgctgtgga tggccgagct gttcggcttc ggccccgagg
      541 ccagcggcat cttcctgacc ggcacctcgc tggccaacct ctgcgccgtg ctggtggccc
      601 gcgaccgggc gctgggggcc gatgtgcggc ataccggcgt gcgcgacgtg cgcgtggtcg
      661 cctatgcctc caagggggtc cacagctgca tcgtccgcgc catggacatg acgggcctgg
      721 gctgggaccg gctgcgactg atcgagaccg acgccgacca cgcgatcagc ctgccggcgc
      781 tggaggcggc catcgccgcg gaccgcgccc agggcctgaa gcccttcctg atcgtcggca
      841 ccgccggctc cgtggacgtg ggcgccatcg acgacctctc gggtctggcc gacatcgccg
      901 cgcgcgaggg cgcggccttc cacgtggacg gagcgttggg ggcgctaggg gttctgacac
      961 ccgaggtcgc gccgcggctc aaggggatcg agcgggccga cagcctggcg ctggatttcc
     1021 acaagctggc gcaggtgccc tatgacgccg gcttcctgct ggtccgcgac gccgcggccc
     1081 acaagcgcac cttcacctat tctgaggccg cctacctgcg ccacgccgag cggggtctgg
     1141 cgggcggcga gtggtggccc tgcgacttcg gccctgacct gtcgcggggg ttccgggcgc
     1201 tgaaggtctg gttctcgctg aagacctacg ggctcgatgc gctgggcgcg gtcatcggcc
     1261 gggcctgcga cctggcggcg gagctggcgg cgcggatcga ggcgagcccg gagctggagc
     1321 tcctggcgcc ggtgggcctc aatatcgtct gcttcggcta tgtgggcggc gacaacgccg
     1381 ccatcgccgc ggacctgcag gaagcgggca gggtggcgcc ctccaccacg acgctcaatg
     1441 gcaagaccgc gatccgcgcg gccatcgtca accaccgcac ggggcctgag gatatcgcgg
     1501 ccctggtcga gggcgtcctg gctctaggcc gcgcccgagc cgccgccaag gcctgacgcg
     1561 gccaggtcac gcagcacctg gtccacggag ccggtccagt cgcgcggcgt cgtctgccga
     1621 tagagcttca tcgtcgggta ccagggcgaa tccgtgcggt cccgcagcca gcgccagtcg
     1681 cagcggacgt aagggagcag cgtccagcag ggcttgccca tggcgccggc caggtgagcc
     1741 gtggccgtat cgacggagat caccagatcg aggccctcga tgatcgcggc ggtgtcggcg
     1801 aagtcctggg cgccggtgtc ctccggttcg agactgatca cgccgcggtc cagcagccgc
     1861 tgggccacgt cgcgcggcag gcgcttgtgg ggggcgttga agccggtggc gctgacctgc
     1921 cagatgaggc ctgcgcgcgc gcccttccca aagccggccc agcgcgcgcg ccggtcggcg
     1981 ggggcggaga gatagggctg ggtcggcagg gtctccaggg tgacgcccag tcgctcgggc
     2041 agggagaaac agcggctcca gtagtcgtgg acgcccaccg cgaccttggt gtgggccgcc
     2101 accgggatca ccacgtcgac gctctccagg gtcgagaaca gatgcgccag cggcgggcgg
     2161 catccgagcg tcacccggga cgcaccccgc gctttcaggt cgcgcgtgaa ccgcgccatc
     2221 tggatctggt cgccgaaccc ctgctcggtc cagatcagca ccgacttgcc ggtcaggggt
     2281 tcaccgcgcc actccgggaa ggcgagtgcg atcggtggca cgacgtcggg gtggagtgcg
     2341 acccgggtgg ccaacaacgg ccagccttcg gcgtagcgtc ccagcgacag gtagagcccg
     2401 cccagcgcca gcatcgtccg ctcgtcgccg ggcttggccg cgagcacggt cagatactcc
     2461 gcctcggcca ggtcggttcg gccgccctcg gcataggcga agcccagcaa gcggcggaca
     2521 tcgacgttat tcggccgctc acgcaccgcc aggccgaggt agtgctgggc gcgggggaag
     2581 gcgccgatct cggtcaggca gatgcccagg ttgatcgcca ggttgacggt cagcaccttg
     2641 tcggcgaggc gctggtagac ctccgccgcc tcggcgaatt ggctcgcctt ctgcagctct
     2701 gcgccctgct cgaaactgcc gtcctcgatc tcgacctgca tccgccctct ggccgccccg
     2761 cgcccgcatt gtccgaagcg cacgcagtat ctaacctcga agttcaagga cagggagccc
     2821 aagtgacagc tttcggccaa gcgcccgcca ccgaccgaac ctccccgacc gcgcggcgcg
     2881 ccgggagccc ccgtggcgtc taggctttcg atcctgcatc ccaagggcga tatgggcctt
     2941 ggccagaatc c
//
LOCUS       DATAJL010000223         1897 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79081,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000223 DATAJL010000000
VERSION     DATAJL010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1897)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1897)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1897
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79081"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..1331
                     /locus_tag="VHN39_04215"
     CDS             42..1331
                     /locus_tag="VHN39_04215"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815568.1"
                     /translation="MAEGIGAAATLPAAERAKLLGYTGLLMTLVMLALPYGAGLIAIP
                     VVFFLKNRLHLQAHEMAVFNAWTSVPLYVAAAFGLLRDRWSPFGLGDRGHLLLFGLLT
                     AAIYAAAAFVTPTYGLLLAGLMLLTASIQTVLSSANGLFSAVGQAHLMPGQASAVLNI
                     AVTIPAVAGFFLGGVFSQMLDGQNAVVAARSLFLAGAGLMAAIALLGAFGPRRLFTAH
                     AEPRETHIAGDIVRLLKHGPIYAPLILWLLWNFAPSFGTALQYHLANTLHATDAQVGA
                     FYAIFFGLYAPSFIAYGYLCQRVRLSKLLFWSTALAVPQMIPLLVVHTAVGALWAAVP
                     MSLMGGLASAAYIDLAIRSCPKGLQGTMMILMASTAYFVALRFGDLLGTDIYDHWGGF
                     TMTIVVATAVYALMLPTLLLAPRHITATTDGEASLAA"
     gene            complement(1317..>1897)
                     /locus_tag="VHN39_04220"
     CDS             complement(1317..>1897)
                     /locus_tag="VHN39_04220"
                     /inference="COORDINATES: protein motif:HMM:NF015382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carcinine hydrolase/isopenicillin-N
                     N-acyltransferase family protein"
                     /protein_id="HEX2815569.1"
                     /translation="ARHQIGSLGETLRLQQAPQGLPVAFVLRRLLQAKSLAEAADLVT
                     SLPHATNQHYLIAAPGGVRSFEASAAGVTEYRPPDRSRVLHTNHPLAAEGAPEPASAR
                     VNTVARLESLRARLSAGAPGLDEIKAALSSCDDPENPVCRIRGEPGGMIAFTTGSMIS
                     ALDPARIETWVSPGPPSRAGYTRFDLAASGGQ"
BASE COUNT          240 a          672 c          666 g          319 t
ORIGIN      
        1 ggcgcctagt cgcgagggtg tgagccggcc ctggggggat catggctgag gggatcgggg
       61 ctgccgcgac gctgccggcg gccgagcggg cgaagctcct gggctacacc gggcttctga
      121 tgacgctggt catgctggcg ctgccctatg gcgctggcct gatcgccatt ccggtggtgt
      181 tcttcctcaa gaaccggctg cacctgcagg cccacgagat ggcggtgttc aacgcctgga
      241 cctccgtgcc gctctatgtc gccgccgcgt tcggcctgtt gcgggaccgc tggagcccgt
      301 tcggcctggg cgaccgcggc cacctgctgt tattcggcct gctgaccgcg gcgatctatg
      361 cggccgcggc cttcgtcacc ccgacctacg gcctgttgct ggccggcctg atgctgctga
      421 cggcctcgat ccagaccgtg ctgagctcgg ccaacggcct gttctccgcc gtcggccagg
      481 cgcacctgat gccgggccag gccagcgccg tgctcaatat cgccgtgacc atccccgctg
      541 tggccggctt cttcctgggc ggcgtgttca gccagatgct ggacggtcag aacgccgtcg
      601 tcgccgcgcg cagcctgttc ctggccggcg ccggcctgat ggcggccatc gcgctgctcg
      661 gcgcattcgg gccccggcgg ctgttcacgg cccacgccga accgcgcgag acccatatcg
      721 ccggcgacat cgtccgcctg ctgaagcacg ggccgatcta tgcgccgctg atcctgtggc
      781 tgctctggaa cttcgcgccc agtttcggca cggctttgca gtaccacctg gccaacacgc
      841 tgcacgccac cgatgctcag gtgggcgcct tctacgcgat cttcttcggc ctctatgcgc
      901 cgagcttcat cgcctacggc tacctctgcc agcgggtgcg gctctcgaag ctgctgttct
      961 ggagcacggc gctggcggtt ccccagatga tcccgctgct ggtcgtccac acggccgtcg
     1021 gggcgctgtg ggcggcggtt cccatgagcc tgatgggcgg gctggcctcg gccgcctaca
     1081 tcgacctggc gatccgctcc tgccccaagg gcctgcaggg caccatgatg atcctgatgg
     1141 ccagcaccgc ctacttcgtg gcgctgcgct tcggcgacct cctgggcacc gacatctatg
     1201 accactgggg cgggttcacg atgacgatag tcgtggcgac ggcggtctac gccctgatgc
     1261 tcccgacgct gctgctggcg cccaggcaca tcaccgccac gacggacgga gaggcctcac
     1321 tggccgcctg acgccgccag gtcgaagcgc gtgtagcccg cgcggctggg cggtcccggg
     1381 ctgacccagg tctcgatgcg ggcggggtcc agcgccgaga tcatcgagcc ggtggtgaag
     1441 gcgatcatgc cgccgggctc gccgcggatg cggcacaccg ggttctccgg atcgtcacag
     1501 gaggagagcg cggccttgat ctcgtcgagg cccggcgcgc cagccgagag acgcgcccgc
     1561 agcgactcca gccgggccac ggtgttgacc cgcgccgagg ccggctccgg cgcgccctcg
     1621 gcagccagcg gatggttggt gtgcagcacc cgggaccgat cgggcgggcg gtattcggtg
     1681 acgccggcgg ctgacgcctc gaaggagcgg accccacccg gggcggcgat caggtagtgc
     1741 tggttggtgg cgtgcggcag gctcgtcacc agatcggcgg cctcggcgag actcttcgcc
     1801 tgcagcaggc gccgcagcac gaaggccacc ggcaggccct gcggcgcctg ctgcaggcga
     1861 agggtctcgc cgaggctgcc gatctggtga cgagcct
//
LOCUS       DATAJL010000224         3625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_3682,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000224 DATAJL010000000
VERSION     DATAJL010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3682"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..1851
                     /locus_tag="VHN39_04225"
     CDS             91..1851
                     /locus_tag="VHN39_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HEX2815570.1"
                     /translation="MSEAPLPAGWPAMSIEQAHAILSGPGMPTEVAEVDIRGVKTKVW
                     KNLPPSLRSVVEASRAHGERIFLVYEDERVSFEAFHRAVAALAAELSAQGVVKGDRVA
                     VVMRNIPEWVVAFYAAASLGAVVTPLNAWWTGPELEYGLTDSGTKVLLVDRERFERMT
                     EHLPNCPDLIRVYVTRERDEIAHPLVTKLEDVIGAPESWKDLPDTALPTVEIAPDDDA
                     TIFYTSGTTGKPKGALGTHRGVNSNIMAAVCGGARSFLRRGETPPAPDPNGPQRSSLI
                     SVPFFHVTGCMAVLNASLFGGAKLVMMRKWDAIRAFELIEREKIQSAGGVPTIAWQLI
                     EHPARKNYDLSSLEAVAYGGAPSAKELVQALRETFPKSMPGQGWGMTETCATVTSNGA
                     EDYWNRPESCGVAVPVSELQIRDPVDGVTVLGVGEVGELWSNGPQVVKGYWNKPEATA
                     QTFVDGWVRTGDLAKVDDEGFCYIIDRAKDMLIRGGENIYCIEVENALYDHPAVMDAA
                     VVGIPHRTLGEEPGAVVTLKPGAHATEDELRAHVAERLAAFKVPVAVKFWHEVLPRNA
                     NGKIMKNELKKLFEDEPAKA"
     gene            complement(1852..2976)
                     /locus_tag="VHN39_04230"
     CDS             complement(1852..2976)
                     /locus_tag="VHN39_04230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815571.1"
                     /translation="MRSATILALGTALIAAAAVAAPRPGASNSAAPADPTLETPGWKA
                     PRNAAGQPDLSGFWSSATMTPTTRNLQIGREASLPAEKVKVMEARFAAALAQRDETKD
                     PNHLPGSAEDKAKDAKLFAVRPDFEFAGGDVGGYNIFWLDPGNHILEVNGQFRTSIVT
                     TPDGQIPPRKDGKSAARFNYNLDEGATSYLGSFDSYESRPEGERCITFARNAPPPMLP
                     NGYYNNNYQILQTRDAAVIVAEGIHDARIVRLNAPHRTDGLRPRLGDSIGHYEANTLV
                     VETTNLPQPDNFYGAWKDLKVTEWFTRVSPTRVKYRFQIEDPGVWAKPWGGEYEFFPL
                     HGIVYEYACHEGNYALPAILAGARRQEKEAQAGKAKSGGD"
     gene            3142..>3625
                     /locus_tag="VHN39_04235"
     CDS             3142..>3625
                     /locus_tag="VHN39_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEX2815572.1"
                     /translation="MKTRADLLLVARGFCESRAKARAAIEAGGVTAAGRPVARPSDLL
                     ANDVALTVTPAHPWVGRGALKLEHALVTWPIPVEGRVVLDVGASTGGFTEVCLAAGAG
                     RVYAVDVGRGQLHASLAGDPRIVILEAVDARNLTAAEIPESPQLIVCDVSFIGLAKAL
                     P"
BASE COUNT          549 a         1200 c         1306 g          570 t
ORIGIN      
        1 gagagcttcc atccggcgct gggttatggt tgttcaccta cgagaccgcg cgggcggaag
       61 acccgggtga gagcatagga gaaacgaccg atgtccgagg ccccgctacc cgccggctgg
      121 cccgccatgt ccatcgaaca ggcccacgcc atcctgagcg ggcccggcat gccgaccgag
      181 gtcgccgagg tggatatccg aggggtcaag accaaggtct ggaagaacct gccgccgtcg
      241 ctgcgctcgg tggtcgaggc ctcccgggcg cacggcgagc gcatcttcct ggtctacgag
      301 gacgagcggg tgagcttcga ggccttccac cgcgccgtcg cggcgctggc cgccgagctc
      361 agcgcccagg gcgtcgtcaa gggcgaccgg gtcgcggtgg tcatgcgcaa tatcccggag
      421 tgggtggtgg ctttctatgc cgccgcgtcg ctcggcgccg tggtgacgcc gctcaacgcc
      481 tggtggacgg ggcccgagct ggaatacggc ctgaccgatt ccgggaccaa ggtgctgctc
      541 gtcgaccgcg aacgcttcga gcggatgacc gagcacctgc ccaactgccc cgacctgatc
      601 cgcgtctacg tcacccgcga gcgcgacgag atcgcccatc cgctggtcac caagctggag
      661 gacgtgatcg gcgcgcccga gagctggaag gacttgccgg acaccgctct gccgaccgtc
      721 gagatcgcgc cggacgacga cgcgacgatc ttctacacct ccggcacgac ggggaagccg
      781 aagggcgcgc tcggcactca tcgcggggtc aattccaaca tcatggcggc cgtctgcggc
      841 ggcgcgcgtt ctttcctgcg gcgcggcgag acgccgccgg cgcccgatcc gaacggcccg
      901 cagcgcagct cgctgatctc ggtgccgttc ttccatgtga ccggctgcat ggcggtgctg
      961 aacgccagcc tgttcggcgg ggccaagctg gtgatgatgc gcaaatggga cgcgatccgc
     1021 gccttcgaac tgatcgagcg cgagaagatc cagtcggcgg gcggtgtgcc gaccatcgcc
     1081 tggcagctga tcgagcatcc ggcgcgcaag aactacgacc tgtcgtcgct ggaggcggtg
     1141 gcctatggcg gcgcgccctc ggccaaggag ctggtccagg cgctcaggga gacattcccc
     1201 aaatccatgc ccggccaggg ctggggcatg accgaaacct gcgccacggt gaccagcaac
     1261 ggcgccgagg actactggaa ccggccggaa agctgcggcg tggcggtgcc ggtctccgag
     1321 ctgcagatcc gcgatcccgt cgatggcgtc accgtgctcg gcgtgggcga ggtgggcgag
     1381 ctgtggtcca acgggccgca agtggtgaag ggctactgga acaagccgga ggccacggcc
     1441 cagaccttcg tcgatggctg ggtgcgcacc ggcgacctgg ccaaggtcga cgacgagggc
     1501 ttctgctaca tcatcgaccg ggccaaggac atgctgatcc ggggcggcga gaacatctac
     1561 tgcatcgagg tggagaacgc cctctacgac cacccggcgg tgatggacgc ggccgtggtt
     1621 ggcatcccgc accggacgct gggcgaggag ccgggcgccg tggtgacgct caagcccggc
     1681 gcgcacgcca ccgaggacga acttcgcgcg catgtggccg agcggctggc ggcgttcaag
     1741 gtgccggtgg cggtgaagtt ctggcacgag gtgctgccgc gcaacgccaa cggcaagatc
     1801 atgaagaacg agctcaagaa gctgttcgaa gacgagccgg cgaaggcctg atcagtcgcc
     1861 gccgctcttg gcctttccgg cctgagcctc cttctcctgc cggcgcgcac cggccaggat
     1921 ggcgggcagg gcatagttgc cctcatggca ggcgtactcg tagacgatgc cgtgcagcgg
     1981 gaagaactcg tattcgccgc cccagggctt cgcccagacg ccggggtcct cgatctggaa
     2041 gcggtacttg acgcgggtgg gcgagacccg ggtgaaccac tcggtgacct tcaggtcctt
     2101 ccaggcgccg tagaaattgt ccggctgcgg caggttggtg gtctccacga ccagcgtgtt
     2161 ggcctcgtag tggccgatgg agtcgcccag gcgcgggcgc aggccatcgg tccgatgcgg
     2221 cgcgttcagc cgcacgatgc gcgcatcgtg gatcccctcg gccacgatca cggcggcgtc
     2281 gcgcgtctgc aggatctggt agttgttgtt gtagtagccg ttgggcagca tcggcggcgg
     2341 cgcgttgcgc gcgaaggtga tgcagcgctc gccctccggc cgcgattcgt agctgtcgaa
     2401 ggagcccagg tagctggtgg cgccctcatc gaggttgtag ttgaaccggg ccgccgactt
     2461 gccgtccttg cgcggcggga tctggccgtc gggcgtggtc acgatcgagg tgcggaactg
     2521 accgttgacc tccaggatgt ggttgcccgg atccagccag aagatgttgt agccgccgac
     2581 gtcgccgccg gcgaactcga agtcggggcg cacggcgaac agcttggcgt ccttggcctt
     2641 gtcttcagcg ctgccgggca gatggttcgg gtccttggtc tcgtcgcgct gggcgagggc
     2701 ggcggcgaac cgcgcctcca tgaccttgac cttctcggcc ggcaggctcg cctccctgcc
     2761 gatctgcagg ttgcgggtgg tgggcgtcat ggtggcgctg ctccagaacc ccgagaggtc
     2821 gggctggccc gcggcgtttc tcggcgcctt ccagccgggc gtctcgaggg tcggatcggc
     2881 cggcgccgcc gaattggatg cccccggcct gggcgccgcg accgccgccg ccgcaatgag
     2941 cgccgttcca agcgccagaa tcgtcgcgct acgcatatcc gaagcctccc attcgcggct
     3001 tcgagggcgc atcggggcct tgagcccagc gccgtggcgg ccgcctgaag gggactccat
     3061 cacagtccgg cggcgggctc aacattctcg gcgaggcaag cccggttgac cgcgccccgc
     3121 gctctcacgt cttctgcgga aatgaagacg cgcgcggacc tattgcttgt ggcccggggg
     3181 ttctgcgaga gccgggccaa ggcgcgcgcg gcgatcgagg cgggcggcgt cacggccgct
     3241 ggccgtcccg tcgccaggcc ctccgatctc ctcgccaatg acgtagcgct gacggtgacg
     3301 ccggcgcatc cctgggtcgg gcgcggcgcg ctgaaactgg agcatgcgct ggtgacctgg
     3361 ccgatcccgg tcgagggccg ggtggtgctg gacgtgggcg cctccaccgg cggcttcacc
     3421 gaggtctgcc tggcggcggg cgcgggccgc gtctacgccg tcgatgtggg gcgcggccag
     3481 ctgcacgcca gcctggccgg cgacccgcgg atcgtgatcc tcgaggccgt cgacgcacga
     3541 aacctgacag cggcggaaat cccggaaagc ccgcaactga tcgtctgcga cgtcagtttc
     3601 atcggtctgg ccaaggccct gccgg
//
LOCUS       DATAJL010000225         6872 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42396,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000225 DATAJL010000000
VERSION     DATAJL010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6872)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6872)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6872
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42396"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..487)
                     /locus_tag="VHN39_04240"
     CDS             complement(<1..487)
                     /locus_tag="VHN39_04240"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX2815573.1"
                     /translation="MATNLTSDPAPPKLSSSWLEHAPAPMATVEGATHRVTDINAAFC
                     RLIGKARDEVVGRTFGELLPDNDEGLALLDHVYHTGDPVSHMEQQRSDPAPTFWSYML
                     WPMMADGRPMGVVIQVTETAPPQERTLAMNEALLLGSLRQHELTAAADLSNVRLQTEI
                     GQ"
     gene            complement(501..2036)
                     /locus_tag="VHN39_04245"
     CDS             complement(501..2036)
                     /locus_tag="VHN39_04245"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HEX2815574.1"
                     /translation="MPTPAEPNSARVKIHNLPTGVRGLDEILGGGVPEFSFNLIGGSP
                     GCGKTTLAHQFAFANATPSRPALYFTVLGEPVIKMLRYQQQFAFFDDSKVGEAVRFIN
                     LSDLVLEKDLSAVLEEIIAQVTAANAGVVVVDSFRTLARKASSAVDELEVQSFIHRLS
                     QFLTSSEATTFLVGEYVQEEIRDNPLFTMVDGILWLSQVTERNSVVRKLQVMKLRGQA
                     SVPGLHTIRITGDGLQAFSRTLGLDIAKPRPSKRKRLSVGIEELDQMLGGGIMEGDSL
                     LVAGPSGTGKSALATQFIAEGLRQGEPGIMAIFEERPDGYIKRADAFGLKLDAAEKKG
                     TLETLYLRPLDLSVDETMLAILDAIVRVGAKRVVIDSLVGFEMALAPGFRADFRESLY
                     RMIGALTGAGITILSTVEVEDNFTSLQFSHYAISFLTDDIVRLRYVEIDGQLRKTMVV
                     IKMRGGNHSKDIREYVITDKGVVVIHPRRTDYSKLSTGIPKRTGPRRAQENEIPPEAK
                     AIE"
     gene            complement(2053..2469)
                     /locus_tag="VHN39_04250"
     CDS             complement(2053..2469)
                     /locus_tag="VHN39_04250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815575.1"
                     /translation="MRSIAEGLMVFEAAAAGPGGAAFPVTGKLAPHLATLVGRGGVRA
                     LMSRALVLAATEVAWLQAAQVNADGDVEGLKALGADLDPADFLEGRVVLLAQLLWLLV
                     VFIGPSLTSRLVGEIWPDVPLKARNFGKEHRREKAK"
     gene            2720..4255
                     /locus_tag="VHN39_04255"
     CDS             2720..4255
                     /locus_tag="VHN39_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S10"
                     /protein_id="HEX2815576.1"
                     /translation="MRKLMIAAVAAVVLSFGLSMAANAWADDAPAKSDSKGKEAGDKD
                     KIDLPPFPADASVKQVTHVAGKTLNYTATVGSLPVRDEKGKKIAEVVFTAYVLDGPRD
                     PNRPVTFAFNGGPGAASVYLNLGAIGPKRVQFGAQGDSPSDPAVLVDNPGTWMDFTDM
                     VFIDPVGTGFSRSLVDKDESKKRFYSIKPDIEYLSRTVYDWLLKNGRMASPKYITGES
                     YGGYRVPRITYFLQTRLGVGISGMVMVSPYLEPPMDQAPDFSPMTWVTTLPSMAAANY
                     ERQGKALSPAQMKDVEDYARGEFVSDLMKGRRDPAAVDRLVGRVTGYTGLDPTFVKRS
                     GGRIEIGPFLRELYRDTGKIASVYDSNVTQEDPFPWSANGRRGDPILDAIIAPTTSAM
                     VDFDTRIVGWKAEGRFNALSYEVGADWEPGVELTEATTDLRQAIAADARMKVLIVHGY
                     DDLSCPYFVSRLVIDQMPISGDVGRVKLAIYPGGHMFYSRPASQAAFREDVKQVFGVR
                     SDR"
     gene            complement(4412..5587)
                     /locus_tag="VHN39_04260"
     CDS             complement(4412..5587)
                     /locus_tag="VHN39_04260"
                     /inference="COORDINATES: protein motif:HMM:NF013402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815577.1"
                     /translation="MSLATLATYSVTAERGFLCPYDAPSVGFEGDFVEVRDLALRLPE
                     ILPTGAVRTVLDTLTVISPDLIAELDDVQARMAMVHYSFLAQAYIWGAETPASFLPAA
                     LAIPIVALADRLGQQPLLQYSGYVLDNWGLLDPAKGVSLDNIYMIQKFAAGTDEAWFV
                     LVHVAIEARAGAALALFGPLIDAAANGDTAQAEGLLGQIVAIWAEINALFDRMPEQCD
                     PYIYFRRVRPYIHGWKDNPALGAGVVYRGVERFHDLPQAFRGQTGSQSSIVPSMDALL
                     GVGHASDPLRTFLDELHTYRPPGHRRFVDDVRAESDVRAFVKRAGHRGLTQAYNAAVQ
                     AVADFRSRHLEYAASYIHSQGRKSAGNDTEIGTGGTPFMKYLKKHRDETKAYLLSFK"
     gene            5689..6132
                     /locus_tag="VHN39_04265"
     CDS             5689..6132
                     /locus_tag="VHN39_04265"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2815578.1"
                     /translation="MDAIDDNILRQLQRDGRVTNLELAERVGLSPSACLRRVQALEAA
                     GVIKGYRAILDRTKFGAGLTVFVMVGLSGQLQRDSLAFERAMANAPEVLECHNITGSV
                     EYLLRVEVSDLSAYKHFHSDVLGTLGQVSSITSHVCLGSSKDLRD"
     gene            complement(6327..6518)
                     /locus_tag="VHN39_04270"
     CDS             complement(6327..6518)
                     /locus_tag="VHN39_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815579.1"
                     /translation="MIRLQRLEEMESLNHGAGFQFLDQIRELGVRADWNRARRGIAEQ
                     NETWRFCGPGELDFTELPR"
     gene            6648..>6872
                     /locus_tag="VHN39_04275"
     CDS             6648..>6872
                     /locus_tag="VHN39_04275"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HEX2815580.1"
                     /translation="MSDVFISYARSTEPEAHAIAEALRALGHEVWRDDQIAAHQAFGK
                     VIEQRLAEAKVVLVLWSADAAESEWGRSEAS"
BASE COUNT         1159 a         2287 c         2246 g         1180 t
ORIGIN      
        1 gctgcccgat ctcggtctgc agtcggacgt tcgacaggtc ggccgcggcg gtgagttcgt
       61 gttggcgcag ggagcccagc agcagcgcct cgttcatggc cagcgtccgt tcctgcggcg
      121 gcgcggtctc ggtcacctgg atcaccacgc ccatcgggcg gccgtcggcc atcatcggcc
      181 acagcatata ggaccagaag gtgggcgccg ggtcggagcg ttgctgctcc atgtggctca
      241 ccggatctcc cgtgtgatag acgtggtcca gcagcgccag gccttcgtcg ttgtccggca
      301 gcagttcgcc gaacgtccgt cccaccacct cgtccctggc cttgccgatc agccggcaga
      361 acgccgcatt gatgtcggtc acccggtgag tcgcgccctc gaccgtcgcc atgggcgcag
      421 gcgcgtgttc gagccaggag ctcgacagct tcgggggcgc cggatccgat gtcaggttgg
      481 tggccatgga ccgcgcaacc ctattcgatt gccttcgcct ccggtgggat ttcgttttcc
      541 tgcgcccgtc gcgggccggt tcgcttggga atcccggtgc tcagcttgct gtagtcggtg
      601 cgccgcgggt ggatgaccac tacgcccttg tcggtgatga cgtattcccg gatgtccttg
      661 ctgtggttgc cgccccgcat cttgatgacc accatggtct tccggagctg cccgtcgatc
      721 tccacgtagc gcaggcgcac gatgtcgtcg gtgaggaacg agatcgcgta gtggctgaac
      781 tgcagcgagg tgaagttgtc ctccacctcc accgtcgaca ggatggtgat tccggcgccg
      841 gtcagcgccc cgatcatccg gtagagcgac tcccggaagt cggcgcggaa gccgggcgcc
      901 agcgccatct cgaacccgac cagggaatcg atcaccaccc gtttggcgcc gacccttacg
      961 atggcgtcca ggatcgccag catcgtctcg tccaccgaaa ggtcgagcgg acgaagatag
     1021 agggtttcca gggtcccctt cttttcggcc gcatcgagtt tcaggccgaa ggcgtccgcc
     1081 cgcttgatgt agccgtccgg ccgctcctcg aagatcgcca tgatcccggg ttcgccctgg
     1141 cgcaggccct cggcgatgaa ctgcgtcgcc agcgccgact tgccggtgcc ggagggcccg
     1201 gccaccagca ggctgtcgcc ctccatgatt ccaccgccca gcatctggtc cagctcctcg
     1261 atgccgacgg aaagccgctt gcgcttcgac ggccgcggct tggcgatgtc cagtcccagc
     1321 gtgcgtgaga aggcctgcag gccgtcgccg gtgatccgga tggtgtgcag gcccggcacc
     1381 gaggcctggc cgcgcagttt catgacctgc agcttgcgca ccacggagtt acgctcagtg
     1441 acctgtgaca gccacaggat gccgtcgacc atggtgaaca gcggattgtc gcggatctcc
     1501 tcctggacgt attcgcccac caggaaggtc gtcgcctccg aactggtcag gaactggctg
     1561 aggcggtgga tgaacgactg cacttccagc tcatccaccg cgctcgacgc cttgcgcgcc
     1621 agggtgcgga aggaatccac caccaccacg cccgcgttgg cggccgtgac ctgggcgatg
     1681 atctcctcca gcaccgcgct caggtccttc tccagcacga ggtcggagag gttgatgaac
     1741 cgcacggcct cgccgacctt ggaatcgtcg aagaacgcga actgctgctg gtagcgcagc
     1801 atcttgatca ccggctcacc gagcaccgtg aagtagagcg ccggccggct gggcgtcgca
     1861 ttggcaaacg cgaactggtg cgccagcgtg gtcttgccgc acccggggga gccgccgatc
     1921 aggttgaagg agaattccgg gaccccgccg cccagaatct cgtcgagccc acgtacgcct
     1981 gtcggcagat tgtggatctt gaccctcgcc gaattgggct cggcgggcgt cggcaaagcg
     2041 gccttcgccc tcttacttgg ctttttcacg tctatgctcc ttgccgaaat tccgcgcttt
     2101 gagcggaacg tccggccaaa tttcgccaac caggcgggag gtcagactcg ggccgatgaa
     2161 caccaccagc agccagagaa gttgggcgag cagaacgact ctgccttcaa ggaaatcggc
     2221 ggggtcgagg tctgcgccga gcgccttcag accttccacg tcgccgtcgg cgttcacttg
     2281 cgcggcctgc agccaggcaa cctccgtcgc cgccagcaca agcgcgcgcg acatcagcgc
     2341 tcgaacgccc ccccggccga ccagggtggc caagtgcgga gcgagcttgc cggtcacggg
     2401 aaacgccgcg ccccctggcc cggcggcggc ggcctcaaag accatcagcc cctcggcgat
     2461 gctccgcatc tgcggagtgg ctctgttcat ctgccctgcc caaggcgccg accacgacgc
     2521 agtcgcacgc caaggtcggg cgcggtgggg cgaaccatcg aactctccgg tctcctctac
     2581 aacagatgac atgctggacc gttcccggcg acgggctggc atgggtccgc gcggcccgca
     2641 aacccgcgaa atccatcgcg ggtttaactt gcggcggctc cggtcttcgc catcttggcg
     2701 agatcgggga gattccttca tgcgtaagct gatgatcgcg gccgtggccg ctgtggtgct
     2761 gtcgttcggg ctttcgatgg cggcaaacgc ctgggccgac gacgcgcccg ccaagtcaga
     2821 ctccaagggc aaggaggccg gcgacaagga caagatcgac ctgccgccgt tcccggccga
     2881 cgccagcgtg aagcaggtga cccatgtggc cggcaagacg ctgaactata ccgccaccgt
     2941 cggctcgctg ccggtgcgcg acgagaaggg caagaagatc gccgaggtgg tgttcacggc
     3001 ctatgtgctc gacgggccgc gcgatccgaa ccggccggtg accttcgcct tcaacggcgg
     3061 cccgggcgcg gcctcggtct atctgaacct cggcgccatc gggcccaagc gcgtgcagtt
     3121 cggcgcccag ggcgacagcc cctccgaccc ggcggtcctg gtggacaatc cggggacctg
     3181 gatggacttc acagacatgg tgttcatcga cccggtcggc accggcttct cccggtcgct
     3241 ggtggacaag gacgagagca agaagcggtt ctattcgatc aagccggaca tcgaatatct
     3301 gtcgcgcacc gtctacgact ggctgctgaa gaacggccgg atggcctcgc ccaagtacat
     3361 caccggcgag agctacggcg gctatcgcgt gccgcgcatc acctacttcc tgcagacccg
     3421 gctgggcgtc gggatcagcg gcatggtgat ggtctcgccc tacctggagc cgcccatgga
     3481 ccaggcgccg gatttctcgc cgatgacctg ggtcacgacg ctgccgtcga tggccgccgc
     3541 caactatgag cggcagggca aggcgctgtc gccggcccag atgaaggacg tcgaggacta
     3601 tgcccgcggc gagttcgtgt ccgacctgat gaagggccgg cgcgacccgg cggcggtgga
     3661 ccggctggtg ggcagggtga ccggctacac cggcctcgac ccgaccttcg tcaagcgctc
     3721 cggcgggcgg atcgagatcg gccccttcct gcgcgagctc tatcgcgaca ccggcaagat
     3781 cgcgagcgtc tacgattcca acgtcaccca ggaggatccc ttcccgtggt ccgccaacgg
     3841 ccggcgcggc gacccgatcc tggacgccat catcgcgccc accaccagcg ccatggtcga
     3901 cttcgacacc cgcatcgtcg gctggaaggc cgaaggccgg ttcaacgccc tcagctacga
     3961 ggtcggcgcc gactgggagc cgggcgtcga gctcaccgag gccaccacgg acctgcgcca
     4021 ggccatcgcg gcggacgcca ggatgaaggt gctgatcgtc cacggctacg acgacctcag
     4081 ctgcccctat ttcgtctcac ggctggtcat cgaccagatg ccgatctctg gcgatgtggg
     4141 ccgggtgaag ctggcgatct atcccggcgg gcacatgttc tattcacgcc ccgccagcca
     4201 ggccgcgttc cgcgaggacg tgaagcaggt gttcggggtg aggagcgacc gatagcggaa
     4261 cgctaccggt atctgatcgg tccgggggac tgatcagcgc gacgaacgcc cgcgtccacg
     4321 acgcgggccg gggtcgccga ccccggcgaa agccggggga agagcgacgg gaggtagccc
     4381 tgcctcctcc ttcagtgtca acgcgatgcg gctatttgaa actgaggagg taggccttcg
     4441 tttcgtcccg gtgcttcttg agatacttca tgaaaggcgt gccgcccgta ccgatctcgg
     4501 tatcgttgcc ggctgatttt cgtccctggc tatggatgta gctggcggcg tattcgaggt
     4561 ggcgcgagcg gaagtccgcg acagcttgca ccgcggcgtt ataggcctgc gtcaggcccc
     4621 tgtggcccgc ccgcttcacg aaggcgcgca cgtcgctctc ggctcggacg tcgtcgacga
     4681 aacgccggtg ccctggggga cggtaggtgt gcaattcgtc caggaacgtc cgaagaggat
     4741 ccgacgcatg cccgacgccg agcaaggcgt ccatggacgg aacgatcgac gactgtgacc
     4801 ccgtctgccc acggaaggct tgcggtaggt cgtggaaccg ctcgacaccc cggtacacga
     4861 cgccggcgcc gagcgccgga ttgtccttcc agccatggat gtagggccgg acccggcgga
     4921 agtagatgta cgggtcgcac tgctcgggca tgcgatcgaa gagggcgttg atctcggccc
     4981 agatcgcaac gatttgccca agcagccctt ccgcctgggc cgtatcgccg ttcgccgccg
     5041 cgtcgatcag cggtccaaag agcgcgagcg ccgcgccggc cctggcttcg atcgcgacat
     5101 ggacaaggac gaaccaggcc tcgtccgtgc ccgccgcgaa cttctggatc atgtagatgt
     5161 tgtcgagcga aacgcctttg gcggggtcga gcaggcccca attgtccagc acgtagccgc
     5221 tgtactgcaa gagcggctgc tgcccgagcc gatcggcgag cgccacgatc ggaatggcca
     5281 gggccgcggg caagaacgac gccggcgttt ccgcgcccca gatgtaggcc tgcgccagga
     5341 aggaatagtg caccatcgcc atccgagcct ggacgtcatc gagctcggcg atcaggtccg
     5401 gcgagatcac ggtcaaggtg tcgagcaccg tgcgcaccgc ccctgttggc aggatttcgg
     5461 gcagtcgaag cgccaggtcg cgcacctcaa cgaagtcccc ctcgaacccc acggaaggcg
     5521 catcgtaggg acagagaaat ccacgctcgg ccgtgacgct gtaggtcgcc agtgtcgcca
     5581 gactcatcac gagctccctg atttgccgac acaactctat tctcacatct acggcgcctg
     5641 attgtgaatt gacgagacgg aggaacattc acgcaatatc ctcccgtgat ggatgccatc
     5701 gacgacaata tattgcgtca gctgcaacgt gacggacggg tgaccaatct ggaactcgcc
     5761 gagcgtgttg gcctatcgcc gtcagcctgc cttcgccggg tccaggcgct ggaggcggcg
     5821 ggcgtcatca agggctacag ggcgatcctc gatcgaacga agtttggcgc cgggctgacc
     5881 gtcttcgtga tggtgggact gtcgggtcag cttcagcgcg attccctcgc ctttgagcgg
     5941 gccatggcga acgcccccga agtgcttgag tgccacaaca tcacaggctc ggtcgaatac
     6001 ctgctgcggg tcgaggtttc cgacctctcg gcctacaagc atttccattc cgacgttctt
     6061 gggaccctcg gtcaggttag cagcatcacc tcgcacgtgt gcctcggctc ctcgaaagac
     6121 cttcgggact gatcaacgac agcgacgatc tgcatgggcg cccgcttggc gccaggaaca
     6181 gccggtggtt tgccgccgag aagcggactc gccgcaggtc cgctatgggg ggaaagcgga
     6241 catccgctca gggcttggta gcggacattc aaatcatccg ctgaggggag gccgttggcc
     6301 cctggcgatg ggatcacgcc gcccgctcag cgcgggagtt cggtgaaatc cagctcgccc
     6361 ggcccgcaga accgccatgt ctcattctgc tcggcgatac cccgcctcgc gcggttccag
     6421 tcggcgcgga cgcccaattc cctaatctgg tccaggaact ggaacccggc gccgtggttg
     6481 aggctctcca tctcctcgag cctctgcaga cggatcaaat agccgcgcct ctcagcctcg
     6541 gggagcgcgt ctcaggggca ccccctgggc gccgaccttt cccgtggcta cggccgtctc
     6601 ccgtcgctag ggtcagcgag aggctgatcg ggaggagccg cgccgggatg tcggatgtct
     6661 tcatctccta cgcgcgttcg acggaacccg aggcccacgc gatcgctgag gcccttcggg
     6721 cgctggggca cgaggtgtgg cgcgacgacc agatcgccgc ccaccaggcg ttcggcaagg
     6781 tgatcgagca gcggctggcc gaagccaagg tggtccttgt gctgtggtcg gctgacgcgg
     6841 cggagtccga gtgggggcgt tccgaagcca gc
//
LOCUS       DATAJL010000226         7428 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79091,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000226 DATAJL010000000
VERSION     DATAJL010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7428
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79091"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VHN39_04280"
     CDS             complement(<1..231)
                     /locus_tag="VHN39_04280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815581.1"
                     /translation="MRIKTNVRGGSGRSSSLTLKAALAGGLLLLACSQPAGATVAVTN
                     FDPPTVKQGPSTYVAAGARQTIVTTPATFTGGV"
     gene            complement(439..849)
                     /locus_tag="VHN39_04285"
     CDS             complement(439..849)
                     /locus_tag="VHN39_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallopeptidase family protein"
                     /protein_id="HEX2815582.1"
                     /translation="MSEHPQFGTAPSLDDLAAMAEAAFLTLPEGFRKLTGDVVFRVDD
                     FPSDEVLDELGIEDPFGLTGLYQGVDIGHRDGFGPAPQPSMIFLYRRPILDEWAERGE
                     VSLEELVTHVLVHEIGHHMGLSDADIDAIEASVG"
     gene            complement(874..1419)
                     /locus_tag="VHN39_04290"
     CDS             complement(874..1419)
                     /locus_tag="VHN39_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815583.1"
                     /translation="MIGEMTAILYPVAANAEQAMAMPLGRAAREREALGVAEEAVIFT
                     TDPTGPAFATREAAVAAYGNLLDEPWRRLAEQILPGQKIAHANPNYEGGRRWPAAPAT
                     PPRTAWRLMVCYWRIATAERPIEAPQARTARRARQPLDRETLSAMTRQPLRPVEPQQP
                     LDIGLFEVRPPDAPHIVMPDE"
     gene            1523..3847
                     /locus_tag="VHN39_04295"
     CDS             1523..3847
                     /locus_tag="VHN39_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS-domain containing protein"
                     /protein_id="HEX2815584.1"
                     /translation="MSPPELILAAAAGAVSLAICAVLWALTQRSQAQDRVDAITQRLA
                     AIESRADAAAASAEAFDSALLAVEDGRALLASGEESLAICAEALGLAEPDPQGVVNAL
                     MRADPDHARRLRALFERGEACAFEVQGEGGLVAVEGRAAGAMAWLRLSTAAGDDAGLP
                     TAPRFAALLNARMTPAWIAAADGSPVWVNAAWLKAVDAASLDEAAARGAAFDKSADAL
                     ASEAANLGQRRDAIRWATVAGKRRAFHVTAQPLEGGGVGVWTEDVSEQEDLRELLKRN
                     VEAHDETLNHIAEAVAVFDKGKKLMFHNTAFAELWGLEPAWLAEQPSHSEVLDRLRQR
                     RRLPETADYTKWKAAELGRYEHLAGGPDEMWSLPDGRTLKVVRQPHPMGGLLLLYSDI
                     TDELKLTSQYNAQIQVQQATLDKLSDAVTVFGSDGRLRLHNEAFARFWNVTPEQVEAA
                     GDFEGVVELCIPKLHDRSFWAELKGRVADPDPQARAPTTGEVKTSDSRIVVYQSRPLP
                     DGATLIAFTDVTDARKLEGALEAKEQALADAERLKRDFVGNVSYELRTPLTTIIGYSE
                     LLERSGEGLSERGRSHAAAVKQAATQLARSIDDVLDMAQIDADEMALDLEDVRVADLL
                     NAQAERWKPEAEAANVKIVVEYPADLGLIRGDARRLGQILEHLVENALSQTPADGTVT
                     IAAKKALGEIQLQVSDTGRGIPFHVQAHIFDRFIGRERGGPGLGLALVKALTELHGGW
                     VALESEPGAGATFTCHLPEEAMAGAAQPELGLRA"
     gene            3875..6034
                     /locus_tag="VHN39_04300"
     CDS             3875..6034
                     /locus_tag="VHN39_04300"
                     /inference="COORDINATES: protein motif:HMM:TIGR03075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent dehydrogenase, methanol/ethanol
                     family"
                     /protein_id="HEX2815585.1"
                     /translation="MPFEKTRAMMGAAILLALGATQVAAAPAATPMAHPMGAAAVDSA
                     RQLAADKEPGTWMSSGRTYSEQRYSPLTGVNKTNVKQLGLAWYGDVDTERGQESTPVV
                     VDGVLYITSAWSMVKAYDAATGKKLWEYDPKVDRATGQVACCDVVNRGVGAWKGKIYL
                     GALDGRLIALDGKTGKVAWQVQTTDPKQPYTITQVPRIVKGMVIIGNAGAEYTCRGYV
                     SAYDAATGKMKWRFYTVPAAPGDPTNTPMLDKAAKTWTGDFWKYGGGATAWDTILYDP
                     KTDLIYFGTGNGLSWSQEIRSPGGGDNLFVSSVIAVKPETGKYVWHFQEVPGDEWDYD
                     VTNPLMTADLKIKGVMRHVLMQAPKTGFYYVWDARTGKLISAEKFAPANWASKIDLKT
                     GRPVENPAVRYTDTKAAIVQPAPLGAHNWHPMSYSPRTGLVYIPVTESSTGFASAKPD
                     TFKINERMYNTGTVSGSDKITELYGLPGAPARGNIRSYLEAYNPVTQKEVWRVPDVVY
                     GATGTMVTASDIVFRGNWSGEFAAYDARTGAKLWSAPTGANVVAAPSTYTIGKDQYVA
                     ILVGARGLPPNVVRTSPVSANNSRILVFKLGATGTLPATPFQAANSAPRTLNPPLMTG
                     TNEQVIDGQGAYGRFCAGCHGAGGVADKSIPDLRLSPVLKSLPDWNDIVLGGSRKFNG
                     MVSFKTTLADGQSEAIFHYIISQANKDKATAEAAAKK"
     gene            6175..6786
                     /locus_tag="VHN39_04305"
     CDS             6175..6786
                     /locus_tag="VHN39_04305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEX2815586.1"
                     /translation="MIQRGSKLLIAGAMALGVVSLGGCATKKFVNEQVGQVSTRVDDA
                     NSKITDVNARVADHDTKLASLDQTSRDALQRATAAGKLAEGKFLYQEVLTDDSMKFGV
                     SKAKLSPEAQARLDTFVEKLKTDNRNVYGEVQGHTDATGSKEANYRLGEERAEAVRRY
                     LNEHGVALNRISTISYGADVPAAPNTKRTGREANRRVVLIVLA"
     gene            6788..>7428
                     /locus_tag="VHN39_04310"
     CDS             6788..>7428
                     /locus_tag="VHN39_04310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815587.1"
                     /translation="MTARAARRRNGLAAALSLVGHLALILAFLATRRAPPTPAEIRPM
                     EVALVAPGPTDQPKGPSTPAPPAAQPPPPKQLARPTKVRPDVKPLPAGEGRSNDTGVQ
                     LSEAQLAGAASAGSGGDGRPCDMARRLQAALRKDTRVQAAVADASSPQGSGGKALYVW
                     NGDWIRSHGQDGNGLGIVREAIMWEVAFAPEACRAEPMHGLLAFSLDDASGSAR"
BASE COUNT         1255 a         2622 c         2500 g         1051 t
ORIGIN      
        1 cacgccgccg gtgaaggtcg cgggcgtcgt tacaatcgtc tgtcgggcgc ctgccgcgac
       61 ataggtgctg ggcccctgct tgacggtggg cgggtcgaaa ttggtcaccg cgacggtcgc
      121 gcccgccggc tgtgaacagg ccaggagtaa gagcccgcca gctaaggcgg ccttcagcgt
      181 cagcgacgat gacctcccgg aacctccacg aacattggtc ttgatacgca tactattttc
      241 cccagtaccc cgtgccgatt gcacgctagt ccggcaaccc aacgccgccg ctcacttccg
      301 acaacgcggc atggcggcgc ttattcctgg gcctggaaaa agctttgcca tggcggcgga
      361 atgccgcggg cgcggggccg tggacggggt ccggtcggcg aacggcgacg gaggccggct
      421 taccgggccg cgcggcgctc agccgacgct cgcctcgatg gcgtcgatgt cggcgtcgga
      481 gaggcccatg tggtggccga tctcgtggac caggacgtgg gtgaccagtt cctccaggct
      541 cacctcgccg cgctcggccc attcgtcgag gatcgggcgg cgatagagaa agatcatcga
      601 gggctggggc gccgggccga acccatcgcg atggccgatg tcgacgccct ggtagagccc
      661 cgtcaggccg aacgggtcct cgatgccgag ctcgtccagc acctcgtcgg aggggaagtc
      721 gtcgacccgg aagaccacat cgccggtcag cttgcggaac ccctccggca gggtcaggaa
      781 ggcggcctcg gccatcgccg ccaggtcgtc cagcgacggc gccgtcccga actggggatg
      841 ctcactcatc gggcccatcg ctcatcgggc cgatcactca tcgggcatga cgatgtgcgg
      901 ggcgtccggc ggtcggacct cgaagaggcc gatatccagc ggctgttgcg gctcgacggg
      961 ccggagcggc tggcgggtca tggcgctcag ggtctcgcgg tccagtggct ggcgggcgcg
     1021 gcgcgcggtg cgggcctggg gcgcctcgat gggccgctcc gccgtcgcga tccgccaata
     1081 gcaaaccatg agcctccagg cggtgcgcgg cggcgtcgcc ggcgcggcgg gccaacgccg
     1141 tccgccctcg tagttcgggt tggcgtgggc gatcttctgt ccggggagga tctgttcggc
     1201 gagccttcgc cagggctcgt ccagcagatt gccataggcc gcgacggcgg cctcgcgcgt
     1261 cgcgaaggcc ggacccgtgg gatcggtggt gaagatcacg gcctcttcgg ccacccccaa
     1321 ggcctcgcgc tcgcgcgccg cgcggccgag gggcatggcc atggcctgct cggcgttcgc
     1381 cgccacgggg tagaggatcg cggtcatctc tccgatcatg cgccaactta gcgtaggttc
     1441 tcaaacgcgg cgcgggtgcg gcgaggtccg ctgcggctta gggtgcgaac gagatgattc
     1501 ggagcgcggc caagaagcca ggatgagccc cccagaactg atccttgcgg cggcggcggg
     1561 cgcggtctcc ctggcgatct gcgccgtctt gtgggcgctc actcaacgca gccaggctca
     1621 ggaccgtgtc gacgccatta cccaacgtct ggccgccatc gagtcccgcg ccgatgcggc
     1681 ggcagcctcc gccgaggcct tcgactccgc cctgctggct gtcgaggacg gccgcgcttt
     1741 gttggcctcc ggcgaggagt ccctggcgat ctgcgccgag gccctgggcc tggccgaacc
     1801 cgacccgcaa ggcgtcgtca acgccctgat gcgcgccgac cccgaccacg cgcggcgcct
     1861 gcgggccctc ttcgagcgcg gcgaggcctg cgccttcgag gtgcagggcg agggtgggct
     1921 tgtggcagtg gagggccgcg cggccggcgc catggcctgg ctcaggctct ccacggcggc
     1981 cggcgacgac gcgggcctgc ccacagcccc tcgctttgcc gccttgctca acgcgaggat
     2041 gacgcccgcc tggatcgccg cggccgacgg ctctccggtc tgggtcaacg ccgcctggct
     2101 gaaggccgtg gacgccgcca gcctggacga ggccgccgcc cgcggcgcgg ccttcgacaa
     2161 gtcagccgat gcgctggcca gcgaggccgc caacctcggc cagcgtcgcg acgccatccg
     2221 ctgggccacc gtcgccggca agcgccgcgc ctttcatgtc accgcccagc ccctggaggg
     2281 cggcggggtc ggcgtctgga cggaggatgt cagtgaacag gaggacctgc gcgaactcct
     2341 caagcgcaat gtcgaggccc acgacgagac gttgaaccac atcgccgagg cggtggcggt
     2401 gttcgacaag ggcaagaagt tgatgttcca caatacggcc ttcgccgaac tgtgggggtt
     2461 ggagcccgcc tggctcgccg aacagcccag ccattccgag gtgctcgacc gcctgcgtca
     2521 gcgccgccgc ctgccggaaa cggcggacta caccaagtgg aaggccgccg agcttggccg
     2581 ctacgagcat ctggccggcg gccccgacga gatgtggagc ctgcccgacg gccgcacgct
     2641 gaaggtggtc cgtcagccgc accccatggg cggcctcttg ctgctctatt ccgacatcac
     2701 cgacgaactg aagctgacca gccagtacaa cgcccagatc caggtgcagc aggcgacgct
     2761 cgacaagctc tctgacgcgg tgaccgtgtt cggctcggac gggcgcttgc gcctgcacaa
     2821 cgaggccttc gcccgcttct ggaacgtcac gcccgaacag gtggaggccg ccggcgactt
     2881 cgaaggcgtg gtcgagctct gcattcccaa gctgcacgac agaagtttct gggccgagct
     2941 caagggtcgc gtagcggatc ccgaccctca ggcgagggcc cccacgacgg gcgaggtgaa
     3001 gacctccgac agccgcatcg tggtctacca gtcgcggcct ctgccggacg gcgcgaccct
     3061 gatcgccttc accgacgtca ccgacgcccg caagcttgag ggcgcgctgg aggccaagga
     3121 acaggcgctg gccgacgccg agcggctgaa gcgcgatttc gtgggcaacg tctcctatga
     3181 actgcgcacg ccgctcacca ccatcatcgg ctattccgaa ctgctggaac gttccggcga
     3241 gggactgtcg gagcgtggcc gcagccatgc cgcggcggtg aaacaggccg ccactcagct
     3301 cgcgcggtcc atcgacgacg tgctcgacat ggcccagatc gacgctgacg agatggcgct
     3361 cgacctggag gacgtccgcg tcgccgacct cctgaacgcc caggccgagc gctggaagcc
     3421 cgaggccgag gccgccaacg tcaagatcgt ggtggaatat ccagcggacc ttggcctgat
     3481 ccgtggcgat gcgcgtcggc ttggccagat ccttgagcac ctggtggaaa acgcgctcag
     3541 ccagacgccc gccgatggca cggtgaccat cgcggcgaag aaagcgctgg gcgaaatcca
     3601 gctgcaggtt tccgataccg gccgcggcat ccccttccac gtccaggccc acatcttcga
     3661 ccgcttcatc ggccgcgagc gcggtgggcc gggcctcggc ctggcgctgg tcaaggcgct
     3721 taccgaactg catggtggct gggtggcgct ggagagcgag cccggggcgg gcgccacctt
     3781 cacctgccac ctgcccgaag aggcgatggc cggcgcggct cagccggagc taggacttcg
     3841 ggcgtaacga aaagaccaga cgggggagcg accaatgcca ttcgaaaaga cccgcgccat
     3901 gatgggcgcc gccatcctgc tggccttagg cgcgacgcag gtcgccgccg cgcccgccgc
     3961 cacgcccatg gctcacccca tgggcgccgc cgcggtggac tccgcccgcc agcttgccgc
     4021 ggacaaggag ccggggacct ggatgtcctc cggccggacc tattcggagc agcgctacag
     4081 cccgctgacc ggcgtcaaca agaccaacgt gaagcaactc ggcctcgcct ggtacggcga
     4141 cgtcgacacc gagcgcggcc aggaatccac cccggtggtg gtcgacggtg tcctctacat
     4201 cacctcggcc tggtccatgg tgaaggccta tgacgcggcc accggcaaga agctctggga
     4261 gtacgatccc aaggtcgacc gcgccaccgg ccaggtcgcc tgctgcgacg tggtcaaccg
     4321 aggcgtcggc gcctggaagg gcaaaatcta tctgggcgcg ctggacggtc ggctgatcgc
     4381 gctcgacggc aagaccggca aggtcgcctg gcaggtccag accaccgatc ccaagcaacc
     4441 ctacacgatc acccaggttc cgcggatcgt gaagggcatg gtgatcatcg gcaacgccgg
     4501 cgccgaatac acctgccgcg gctacgtctc cgcctacgac gcggccaccg gcaagatgaa
     4561 gtggcgcttc tataccgtgc ccgccgcgcc cggcgatccg accaacacac ccatgctcga
     4621 caaggccgcc aagacctgga ccggcgactt ctggaaatac ggcggcgggg ccacggcctg
     4681 ggacaccatc ctctacgatc ccaagaccga cctgatctac ttcggcaccg gcaatggcct
     4741 ttcctggagc caggagatcc gcagccccgg cggcggcgac aatctcttcg tttcctcggt
     4801 catcgcggtg aagcccgaga ccggcaaata cgtctggcac ttccaggagg tgccgggcga
     4861 cgagtgggac tacgacgtca ccaatccgct gatgaccgct gacctgaaga tcaagggcgt
     4921 catgcgccac gtcctgatgc aggccccgaa gaccggcttc tactacgtgt gggacgccag
     4981 gaccgggaag ctgatctcgg ccgagaagtt cgcgccggcc aactgggcct cgaagatcga
     5041 cctgaaaacc ggccgcccgg tggagaaccc cgcggtccgc tacaccgaca ccaaggccgc
     5101 catcgtccag ccggccccgc tgggggccca caactggcac ccgatgtcct acagcccgag
     5161 gaccgggttg gtgtacatcc cggtcaccga gagctcgacc ggcttcgcca gcgccaagcc
     5221 cgataccttc aagatcaacg agcggatgta caataccggc accgtctccg gctccgacaa
     5281 gatcaccgag ctctacggcc tgccgggcgc accggcccgc ggcaatatcc gcagctacct
     5341 ggaagcctac aatccggtga cccagaagga ggtctggcgc gtgccggacg tggtctatgg
     5401 cgccaccggc accatggtca ccgccagcga tatcgtcttc cgcggcaact ggtcgggcga
     5461 gttcgcggcc tatgacgcca ggaccggcgc caagctctgg tcggccccga ccggcgccaa
     5521 tgtggtggcc gcgccttcga cctacaccat cggcaaggac cagtacgtgg cgatcctggt
     5581 gggcgcccgc ggcctgccgc ccaacgtggt gcggaccagc ccggtcagcg ccaacaactc
     5641 gcgtatcctg gtcttcaagc tgggggctac gggaaccctg ccagccacgc cgttccaggc
     5701 cgccaactcc gcgccgcgca ccctcaaccc gccgctgatg accggcacca acgagcaggt
     5761 gatcgacggc cagggcgcct acggccgctt ctgcgccggc tgccacggcg cgggcggcgt
     5821 cgccgacaag tcgatccccg acctgcgcct gtcgccggtg ctgaagagcc tcccggactg
     5881 gaacgacatc gtcctcggcg gcagccgcaa gttcaacggc atggtctcct tcaagaccac
     5941 gctggccgac ggccagtcgg aggcgatctt ccattacatc atcagccagg cgaacaagga
     6001 caaggcgacg gccgaggcgg cggccaaaaa gtgagctgat ccaactccct acggtcaagc
     6061 tacgcccaca aacggccctc ttcgggttca caaaccgccc tcttctcccc cgattgaatc
     6121 cctcgggtcg gggtttcacg gcggttcgca ggaaccggaa tggagggact tcgcatgatc
     6181 caacgtggat cgaagctatt gatcgccggc gccatggccc tgggggtcgt cagcctgggc
     6241 ggctgcgcca ccaagaaatt cgtcaacgag caggtgggcc aggtctccac ccgcgtcgat
     6301 gacgcgaact ccaagatcac agacgtgaac gcccgcgtgg ccgaccatga caccaagctg
     6361 gcgagcctcg accagacttc ccgcgacgcc ctgcagcggg cgacggcggc cggcaagctg
     6421 gctgagggca agttcctcta ccaggaggtc ctgaccgacg actcgatgaa gttcggcgtg
     6481 tccaaagcca agctctcgcc cgaggcccag gcccggctcg acacgtttgt cgagaagctg
     6541 aaaacggaca accgtaatgt ttacggggaa gttcaaggac atacggacgc caccggatcg
     6601 aaggaagcca actaccggct gggcgaagaa cgtgccgagg cggtgcggcg ctatctgaac
     6661 gaacacggcg tggcgctgaa ccggatctcg acgatctcct acggcgccga cgtaccggcg
     6721 gcgcccaaca ccaagcggac aggccgggag gccaaccgcc gggtggtgct gatcgtcctg
     6781 gcataaggtg accgcccgcg ccgcgcgccg ccgcaacggg ctggccgcgg cgctgagcct
     6841 ggtaggccat ctggcgctca tcctggcgtt cctggcgaca cgccgggcgc cgccgacgcc
     6901 ggccgagatt cggccgatgg aggtggccct ggtggcgccg gggcccacgg atcagccgaa
     6961 gggaccctcg acgccagccc cgccggcggc ccagccgccg ccgcccaagc agctcgcccg
     7021 gccgaccaag gtgcgtccgg acgtgaagcc ccttccggcc ggcgagggcc ggtcgaacga
     7081 cacgggcgtg cagctcagcg aggcccagct cgccggcgcg gcctccgccg gctccggcgg
     7141 agacggccgg ccctgcgaca tggcccgacg cctccaggcg gcgctcagga aggacacccg
     7201 cgtccaggcc gccgtcgccg acgcgagctc cccgcaaggc tctggcggca aggccctcta
     7261 tgtctggaac ggggactgga tccgcagcca cggccaggac ggcaatggcc tgggcatcgt
     7321 gcgcgaggcg atcatgtggg aggtggcctt cgcgccggaa gcctgccgcg ccgagccgat
     7381 gcacggcctg ctggccttct ccctggacga cgcctccggc tccgcccg
//
LOCUS       DATAJL010000227         1910 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29313,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000227 DATAJL010000000
VERSION     DATAJL010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29313"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..1522)
                     /gene="hemL"
                     /locus_tag="VHN39_04315"
     CDS             complement(212..1522)
                     /gene="hemL"
                     /locus_tag="VHN39_04315"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: protein motif:HMM:NF000818.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEX2815588.1"
                     /translation="MPTNPGAKRPRSSTLFERACALFPGGVNSPVRAFKSVGGTPVFI
                     DRGVGPFVHDVDGNRYTDFVCSWGALILGHADPDVLAAVIHAAAGGTSFGAPTAREVE
                     LGELIRFMMPALEKMRFVSSGTEATMSALRAARGFTGRHRIIKIDGGYHGHADSLLAK
                     AGSGVVSLGLPGSSGVTPAAVADTLVVPYNDLDAMRAAFEEHREEIAALIIEPIPANM
                     GVVMPRPAYLPLLRALCDEHGALLIFDEVITGFRVARGGAQQMFGVRPDLTCLGKVAG
                     GGLPFGVYGGRADVMDVIAPVGPVYQAGTLSGNPVAVAAGLATLRRLDDHAYVALEGL
                     GRVLEDDLSRAVRRTGVTARVQRVGSAFTLFFAPEEVVDLASAKQSNTDHYSKFFHGM
                     LERGFLLPPAQFEAAFVSLAHTLDEINAFTAAAREALAEVAAGK"
     gene            complement(1591..>1910)
                     /locus_tag="VHN39_04320"
     CDS             complement(1591..>1910)
                     /locus_tag="VHN39_04320"
                     /inference="COORDINATES: protein motif:HMM:NF015922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HEX2815589.1"
                     /translation="LMLITDGGKLIRMPVDGIPTIGRNTQGVRLIRLEPEEKVVAMER
                     MAEKEEGESEVAPEVAAARAELQAEALGAEDLGDEAVADEAEEDDDDEDKDGTDEVPG
                     DDS"
BASE COUNT          293 a          645 c          685 g          287 t
ORIGIN      
        1 tttccgaggt aaccgaggca gaggtaagcg acgatctcca ggccgagggc gccggcgctc
       61 ccggcggcct gaatcatttt tttcgcgtcc ggatcgatga gtggcgttcg ggtaacacgc
      121 ccaagccctg aaatcaaggc agatcacgcc caagagccga cgatgctcga tgcccgcgaa
      181 tcggacgccc gcggatcggg caggtgatcg ttcacttgcc ggcggcgact tccgccagcg
      241 cctcgcgcgc ggcggcggtg aaggcgttga tctcgtcgag cgtgtgcgcc agcgagacga
      301 aggcggcctc gaattgggcg ggcggcagca ggaagccgcg ctccagcatc ccatggaaga
      361 acttggagta gtggtcggtg ttggattgtt tcgcgctggc taagtcgacg acctcttcgg
      421 gggcgaagaa gagcgtgaag gccgagccga cccgctgcac gcgggcggtc accccggtgc
      481 ggcgcaccgc gcgggagaga tcgtcctcca gcacgcggcc gagcccctcg agcgccacgt
      541 aggcgtggtc gtcgagccgc cggagcgtgg ccagcccggc ggcgaccgcc accggatttc
      601 ctgacagagt ccccgcctga tagaccggcc cgaccggggc gatcacgtcc atcacgtcgg
      661 cccgcccgcc gtagacgccg aagggcaggc cgccgcccgc caccttgccg aggcaggtga
      721 gatcggggcg gacgccgaac atctgctggg cgccgccgcg tgcgacccgg aagccggtga
      781 tcacctcgtc gaagatcagc agcgcgccgt gctcgtcgca gagcgcccgg aggagcggca
      841 gataggccgg gcgcggcatg accaccccca tgttggcggg gatcggctcg atgatgagcg
      901 cggcgatctc ctcgcggtgc tcctcgaacg ccgcccgcat ggcgtcgaga tcgttgtagg
      961 ggacgaccag cgtgtcggcg accgccgccg gcgtgacgcc gctcgatccc ggaagcccca
     1021 gcgacaccac ccccgagccg gccttggcca gcagcgagtc ggcgtggccg tggtagccgc
     1081 cgtcgatctt gatgatgcgg tggcgcccgg tgaagccgcg cgccgcccgc agcgccgaca
     1141 tcgtcgcctc ggtgccggag gagacgaagc gcatcttctc gagcgccggc atcatgaatc
     1201 ggatgagctc cccgagctcc acctcgcgcg cggtcggcgc gccgaagctg gtcccgcccg
     1261 cggcggcgtg gatgaccgcg gccaaaacgt cgggatcggc gtgaccgagg atcagcgccc
     1321 cccacgagca gacgaagtcg gtgtaacggt tgccgtcgac gtcatgcacg aacggcccga
     1381 cgccgcgatc gatgaagacc ggcgtgccgc ccaccgactt gaaggcgcgc acgggcgagt
     1441 tcacaccgcc gggaaagagc gcgcaggccc gctcgaagag ggtggaggag cgggggcgtt
     1501 tggcgccggg attcgtgggc atgcttcggg atctgctgtt ggagtgtggg gggttggagt
     1561 gtggcagtgt gaattgccga ggcgagcggg ctaggagtcg tctccaggaa cctcgtcggt
     1621 cccgtcttta tcctcgtcgt cgtcgtcttc ttcggcctcg tcggcgaccg cttcgtcgcc
     1681 gagatcctcg gcgcccagcg cctcggcctg cagctctgcg cgcgcggcgg ccacctcagg
     1741 ggcgacctcg ctctccccct cctccttctc ggccatccgc tccatggcga cgaccttctc
     1801 ctccggctcg aggcggatga ggcgaacgcc ctgggtgttg cggccgatgg tggggatgcc
     1861 gtcgaccggc atccggatca gcttgccccc gtcggtgatg agcatgagat
//
LOCUS       DATAJL010000228         1915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91810,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000228 DATAJL010000000
VERSION     DATAJL010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91810"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..782
                     /gene="dapF"
                     /locus_tag="VHN39_04325"
     CDS             <1..782
                     /gene="dapF"
                     /locus_tag="VHN39_04325"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEX2815590.1"
                     /translation="SAPFEPSAEAVRAIADRATGVGCDQLIVIEPPSPEKRGEGVDAR
                     VRFWNSDGEEIGACGNGTRCVGWLLMQASGKDHAVMESRAGLLVASRAGERLVSVDMG
                     KPGLDWTQIPLAHEQDTRALDVKLSDDPALATSPGSVSMGNPHVVFFVDDLDAAPVAT
                     AGPAIEHHPLFPEAVNVGFAQVLSRDRIRLRVWERGAGLTKACGTGACAALVAAVRRD
                     LTDRSAVVVTDGGELLIEWRAEDDHVIMTGPAAVDFAGELP"
     gene            779..>1915
                     /gene="mtaB"
                     /locus_tag="VHN39_04330"
     CDS             779..>1915
                     /gene="mtaB"
                     /locus_tag="VHN39_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEX2815591.1"
                     /translation="MSAPGTNDVDVITFGCRLNAYESEIIRKQAAADGLTDAIVFNTC
                     AVTGEAVRQARQAIRKARRERPGAKLIVTGCAAQIDPAAFAAMAEVDLVLGNAEKSAA
                     GAYLPQPELGRVRVNDIMSVRETAGHLIDGLKDRARAYVEVQNGCDHRCTFCIIPYGR
                     GNSRSAPAGEVVAQVARLAAQGYREVVLTGVDVTSWGSDLPGQPTLGQLVARILKLVP
                     ELPRLRLSSIDAAEIDPDLMRCLAEEPRLMPYLHLSLQAGDDMILKRMKRRHLRADAL
                     RLIADVRAARPDTAFGADFIAGFPTETEAMFENTLSLVEEAGLSFLHVFPFSPRPGTP
                     AARMPAVKGGVVKERAARLRAAGDAALVRHLQRQVGGMVMGLVER"
BASE COUNT          274 a          683 c          685 g          273 t
ORIGIN      
        1 gcagcgcgcc gttcgagccg agcgccgagg ctgtgcgcgc catcgccgac cgcgcgaccg
       61 gcgtcggctg cgaccagctg atcgtcatcg agcccccaag tcctgaaaag aggggcgaag
      121 gggtcgatgc gcgggtgcgc ttctggaatt ccgacggcga ggagatcggc gcctgcggca
      181 acggcacgcg ctgcgtcggt tggctgctga tgcaggccag cggcaaggac catgcggtga
      241 tggaatcccg cgccggcctg ctggtcgcca gccgcgccgg cgagcggctg gtcagcgtcg
      301 acatgggcaa gcccggcctc gactggacgc agatcccgct ggcccacgag caggataccc
      361 gggccctcga tgtgaaactc tcggacgatc cggcgctggc gacatcgccg ggctcggtct
      421 ccatgggcaa tccgcacgtg gtgttcttcg tggacgatct cgacgcggcc ccggtcgcga
      481 ccgctggtcc ggccatcgag catcacccgc tgttccctga ggccgtgaac gtcggcttcg
      541 cccaggtgct gagccgcgac cggattcgcc tgcgggtctg ggagcgcggc gcgggcctga
      601 cgaaggcctg cggcaccggc gcctgcgcgg cccttgtggc cgccgtgcgc cgtgacctga
      661 ccgatcgctc ggcggtggtg gtcaccgacg gcggcgagct gctgatcgaa tggcgcgccg
      721 aggacgacca cgtgatcatg accggccccg ccgccgtcga tttcgcgggc gaactgccat
      781 gagcgcgccc ggcacaaacg acgtggacgt catcacgttc ggctgccggc tgaacgccta
      841 cgagagcgag atcatccgca agcaggcggc cgccgatggc ctgaccgacg ccatcgtctt
      901 caacacctgc gcggtgaccg gcgaggccgt gcgccaggct cgccaggcga tccgcaaggc
      961 caggcgtgaa cggccgggcg cgaagctgat cgtcaccggc tgcgcggccc agatcgaccc
     1021 ggccgccttc gccgccatgg cggaggtcga cctcgtgctg ggcaacgcgg aaaagtccgc
     1081 tgccggcgcc taccttccgc agccggaact cggccgggtc cgggtcaacg acatcatgag
     1141 cgtgcgcgag accgcgggcc acctgatcga cgggttgaag gatcgggcgc gggcctacgt
     1201 cgaggtgcag aacggctgcg accaccgctg caccttctgc atcatcccct atggccgcgg
     1261 gaattcgcgc tcggcgcccg ccggcgaggt ggtggcccag gtcgcccggc tggccgccca
     1321 gggctaccgc gaggtggtgc tgaccggcgt cgacgtgacc agctggggct cggacctgcc
     1381 gggccagccg acgctgggcc agctcgtcgc gcgcatcctg aagctggtcc cggagctgcc
     1441 gcgcctgcgc ctgtcgtcca tcgacgccgc ggagatcgat ccggacctga tgcgctgcct
     1501 cgccgaagag ccccgcctga tgccctatct gcatctgtcc ctgcaggccg gcgacgacat
     1561 gatcctcaag cggatgaagc gccgccacct tcgggccgac gccctgaggc tgatcgccga
     1621 tgttcgcgcc gcgcgcccgg acaccgcctt cggcgccgac ttcatcgcgg gcttccccac
     1681 cgagaccgag gcgatgttcg agaacaccct ctcgctcgtg gaagaggcgg gcctgtcgtt
     1741 cctgcatgtc ttcccgttca gtccgcgccc cggaacgccc gccgcgcgga tgccggcggt
     1801 gaagggcggg gtggtcaagg aacgggcggc ccgcctgcgc gcggccggcg acgccgcgct
     1861 cgtccggcac ctgcagcgcc aggtcggcgg catggtgatg ggcctggtgg aacga
//
LOCUS       DATAJL010000229         2481 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_55157,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000229 DATAJL010000000
VERSION     DATAJL010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2481
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55157"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..357)
                     /locus_tag="VHN39_04335"
     CDS             complement(<1..357)
                     /locus_tag="VHN39_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HEX2815592.1"
                     /translation="MSVRFGVSPIAWVNDDMPELGGDTPLETILADARDIGFDGVELG
                     GKFPRDAAVLKPLLAGYGLDLIGGWYSGELLIRDVEAEIAAAQDHVALLKAMGSTVFV
                     HAETSNAIHGQRATPLS"
     gene            complement(361..2196)
                     /gene="iolD"
                     /locus_tag="VHN39_04340"
     CDS             complement(361..2196)
                     /gene="iolD"
                     /locus_tag="VHN39_04340"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016823 - hydrolase activity, acting on
                     acid carbon-carbon bonds, in ketonic substances [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019310 - inositol catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HEX2815593.1"
                     /translation="MTMVRLTAAQAMVRYIAAQDVQLDGATVPFFAGVWAIFGHGNVA
                     GLGEALHAAQEILPTFRAHNEQAMAHAAIAYAKQMRRSRAMICTTSIGPGATNMVTAA
                     ALAHVNRLPVLLLPGDVYASRGPDPVLQQIEDFADGTVSANDCFRPVSRYFDRITRPG
                     QLLAALPRAMAVLTDPGSCGPVTLAFCQDVQAEAYDWPEAFFRRRLWTTRRQPADPRE
                     IEALTRRLREAKAPLIVAGGGVLYARADTALAEFAARTGVPVAETQAGKGALAWDHPQ
                     ALGAIGVTGTSAANAAAGAADLVVGIGTRLQDFTTGSRALFANPDCVLAQVNVATFDA
                     YKHGAEPVVGDAGAVLEALSDGLGDWRAPRAWTDRATADVAIWTAQAGAAMAATDAQR
                     PSDAQIIGAVWREMDRDMIVVCAAGGLPGELHKLWRVRRPGGYHVEYGYSCMGYEIAG
                     GLGVKLAEPGRDVVVMVGDGSYLMLNSEIATSVAMGCKLILTVLDNRGFGCINRLQQE
                     TGGAPFNNLLGEAAPAIDFAAHAASLGARSEKVVGIAALKDALARARASDRTYVIVID
                     TDPAISTEAGGAWWDVAVPEVSERAEVRAARAAYDGARQDQRRRD"
     gene            complement(2193..>2481)
                     /locus_tag="VHN39_04345"
     CDS             complement(2193..>2481)
                     /locus_tag="VHN39_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2090 domain-containing protein"
                     /protein_id="HEX2815594.1"
                     /translation="RKVAQVIEGRDPFCRGVVLLGLSQPTKTLVAAFEATAAVPMVKG
                     FAVGRTIFNDAARAWLGGEIDDAAAIDMLRSNLSTLVEAWRRARGAVGQAA"
BASE COUNT          374 a          893 c          862 g          352 t
ORIGIN      
        1 gctgagcggg gtggcgcgct ggccgtgaat ggcgttgctg gtctcggcgt ggacgaagac
       61 cgtggaaccc atggccttca gcagcgccac gtgatcctgc gccgcggcga tctcggcctc
      121 gacgtcgcgg atcaacagct cgccgctata ccagccgccg atcaggtcga ggccatagcc
      181 ggccagcagc ggcttcagga cggccgcatc cctggggaac ttgccgccca gctcgacgcc
      241 gtcgaatccg atgtcgcggg cgtcggccag gatggtctcg agcggcgtgt cgccgccgag
      301 ctcgggcatg tcgtcgttga cccaggcgat cggactgacc ccgaaacgga cggacaaggc
      361 tcagtccctc cgacgttggt cttggcgcgc gccgtcatag gccgcgcggg cggcccgcac
      421 ttccgcgcgc tccgacacct ccggaaccgc gacgtcccac caggcgccgc cggcctcggt
      481 ggaaatcgcc gggtcggtgt cgatgacgat gacataggtc cggtcgctgg ccctggcgcg
      541 cgccagcgcg tccttcagcg ccgcaatccc caccaccttc tccgaccgcg cgccgaggct
      601 cgcagcatgg gcggcaaagt cgatcgccgg cgccgcctcg cccagcaggt tgttgaaggg
      661 cgcgccgcca gtctcctgct gcaggcggtt gatgcagccg aagccgcggt tgtcgaggac
      721 cgtgaggatc agcttgcagc ccatcgccac cgaggtcgcg atctcggaat tcagcatcag
      781 gtaggagccg tccccgacca tcaccacgac gtcgcggccg ggctcggcca gcttcacgcc
      841 caggccgccg gcgatctcgt agcccatgca ggaatagccg tactcgacgt ggtagccacc
      901 gggccgccgc acacgccaga gcttgtgcag ctcgcccggc aggccacctg cggcgcagac
      961 cacgatcatg tctctatcca tctcccgcca gaccgcgcct atgatctggg cgtcggaggg
     1021 ccgttgcgca tcggtggcgg ccatagcggc gccggcctgg gcggtccaga tcgcgacatc
     1081 tgccgtcgcg cgatccgtcc aggcccgcgg cgcccgccag tcgcctagcc catccgacag
     1141 ggcttccaga accgcacccg cgtcacccac caccggctcg gcgccgtgct tgtaggcgtc
     1201 gaaggtcgcg acattgacct gcgccagcac gcagtcggga ttggcgaaca gggcccgcga
     1261 gccggtggtg aagtcctgca accgcgtgcc gattcccacc accagatcgg cggcgccggc
     1321 ggcggcgttg gcggcgctcg ttccggtgac gccgatggcg ccaagggctt gggggtgatc
     1381 ccaggccagc gcccccttgc cggcctgggt ctcggccacc gggacgccgg tacgagctgc
     1441 aaactcggcc agcgccgtgt ccgcgcgcgc atagagcacc ccgccgccgg ctacgatcag
     1501 cggcgccttg gcttcgcgca gacgccgcgt cagagcctcg atctcgcgtg ggtccgccgg
     1561 ctggcggcga gtggtccaca ggcggcggcg gaagaaggcc tccggccagt cataggcctc
     1621 ggcctggacg tcctggcaga aggcgagcgt caccggcccg caagaccccg gatcggtcag
     1681 caccgccatg gcccgcggca gggcggcgag cagctggccg ggccgggtga tgcggtcgaa
     1741 gtagcgggag accggccgga agcaatcgtt ggcgctcacc gtcccgtcgg cgaaatcctc
     1801 gatctgctgc agcaccggat cgggcccgcg gctcgcgtag acgtcgccgg gcaggagcag
     1861 caccggcagg cggttcacat gcgccagcgc ggcggccgtc accatgttgg tggcgcctgg
     1921 cccgatggac gtggtgcaga tcatggcccg cgaacggcgc atctgcttgg cgtaggcgat
     1981 ggcggcgtgg gccatggcct gctcattgtg ggcgcggaag gtcggcaaga tctcctgcgc
     2041 ggcgtggagc gcttcgccca ggcccgcgac attgccgtgt ccgaagatcg cccagacgcc
     2101 ggcgaagaac gggaccgtgg cgccatccag ctggacatcc tgggctgcga tgtagcgcac
     2161 catcgcctgg gcggctgtca gcctgaccat agtcacgccg cctgtcccac cgcgccgcgc
     2221 gcgcgccgcc aggcttcgac aagcgtcgaa aggttcgatc gcaacatgtc gatcgccgcc
     2281 gcgtcgtcga tctcgccgcc aagccaggcg cgggccgcgt cgttgaagat ggtgcggccg
     2341 accgcgaaac ccttgaccat gggcacggcc gcggtcgcct cgaacgccgc gaccagagtt
     2401 ttcgtcggct gggaaaggcc cagcaggacc accccgcggc agaagggatc gcggccctcg
     2461 atcacctggg cgaccttgcg c
//
LOCUS       DATAJL010000230         3580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_55162,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000230 DATAJL010000000
VERSION     DATAJL010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3580
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55162"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..643
                     /locus_tag="VHN39_04350"
     CDS             <1..643
                     /locus_tag="VHN39_04350"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX2815595.1"
                     /translation="ANPGNPTGTWIPFSEVRRLHEALPPSVVLVLDGAYGEFATDASF
                     SDGLDLARGSSNVVVTHTFSKLHGLAALRIGWGYAPLEIAQACDRIRLPFNTSIAAQR
                     AAVAALADEDFQKASLDLVETWRPWLNQQLGGLGLEVVQPSATNFVLVGFPGTPGRTA
                     ADADAYLTSRGLLVRAVGLYGLPNHLRVTIGLEAHNRALVDALADFMAIQPAQ"
     gene            640..1641
                     /locus_tag="VHN39_04355"
     CDS             640..1641
                     /locus_tag="VHN39_04355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate/arogenate dehydrogenase family
                     protein"
                     /protein_id="HEX2815596.1"
                     /translation="MSTPPSAGKQVYAKMAVIGCGLIGASVILAARASGAVGEVAVAD
                     ASPAARERITALGLADLVTADPAEAVRGADLVVFAVPVMAMGEAARAAAPALKPGATA
                     TDVGSVKAAVGEALLEALPASCFIVPGHPIAGTEQSGPDAGFAELFQNRWVILTPQDR
                     DDEPYADAVQRLRDFWTALGSNVELMDDKHHDLVLAVTSHLPHLIAYNIVGTAADLEG
                     VTRGEVMKYSAGGFRDFTRIAASDPTMWRDVFLANKDAVLEVLGRFTEDLQALSRAIR
                     WSEGDKLFELFSRTREIRRGIIAAGQESAEPNFGRDHRHPSEADADSPQAAPDTKAQ"
     gene            1696..2664
                     /locus_tag="VHN39_04360"
     CDS             1696..2664
                     /locus_tag="VHN39_04360"
                     /inference="COORDINATES: protein motif:HMM:NF016879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Coq4 family protein"
                     /protein_id="HEX2815597.1"
                     /translation="MSDDQERAGFEALTQAGADEDAARGLGARLKASPQPNDLKALAA
                     LWIHGAVAAPESIPGIYDAAAEGYLGEPVGAKPVPTDTTQPPEPIPAAFWAGLWELLE
                     EPRGGLEAVNLTTKTAALAGLTSPGVQARVGKASLAYPGVPAAVAQGYPHKFKLETLA
                     RCPPDSLGGQFHALIVDNGFDLEVLDRSALGLDKLPAPLDYLNARILQCHDLWHIVGG
                     YQTTALHEVAISAFQLAQFGHHYSSMFLGMVLTRIAFERPEGGAIMLPIILTAWAHGR
                     RTPPLLGVNWESVWNKPLADVRKQLGVTPYVSPFPADLFEQLSVAA"
     gene            2700..3014
                     /locus_tag="VHN39_04365"
     CDS             2700..3014
                     /locus_tag="VHN39_04365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX2815598.1"
                     /translation="MMLDATLIAIADPTRRAILSRLAEGEARVTELARPFAISLNSVS
                     KHIRMLERGQLVRRRIEGREHILALNREGLDEAARWIEEQRALWAWRLGKLDDILKET
                     TP"
     gene            3011..3472
                     /locus_tag="VHN39_04370"
     CDS             3011..3472
                     /locus_tag="VHN39_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2815599.1"
                     /translation="MSVTEKTGQVVVTKHYDVSPEQVFDAFLNVETARRFLFATATGE
                     MLVAEIDPRVGGRFTFTERRPEMGDVLHTGEYLEIDRPRRLVFTFGVPQFNPAYTRVT
                     VEIVASGSGCALTLTNDDVPAEYAEGNQDGWSRILASLVPAISGVKAAGWA"
BASE COUNT          535 a         1385 c         1151 g          509 t
ORIGIN      
        1 ggccaacccc ggcaacccca ccggaacctg gatcccgttc tccgaggtcc gccgcctgca
       61 cgaggccctg ccgcccagcg tggtgctggt gctggacggc gcctatggcg agttcgccac
      121 cgacgcgtcc ttcagcgatg gcctggacct ggcgcgcggg tcgtccaacg tcgtggtcac
      181 ccacaccttc tccaagctgc acggcctggc ggccttacgc atcggctggg gctatgcgcc
      241 gctggagatc gcccaggcct gcgaccgcat ccgcctgccg ttcaacacct cgatcgccgc
      301 ccagcgtgcg gccgtggcgg cgctcgccga cgaggacttc cagaaggcct ccctcgacct
      361 cgtcgagacc tggcggccct ggctcaacca gcagctcggc ggcctgggcc tcgaggtcgt
      421 ccagccgtcg gcgaccaact tcgtcctggt gggctttccg ggaacccccg gccgcaccgc
      481 cgccgacgcc gacgcctatc tgacctcgcg cggcctgctg gtccgcgccg tcggcctcta
      541 cggcctgccc aaccacctgc gcgtcaccat cggcctggag gcgcacaacc gcgcgctggt
      601 cgacgcgctc gccgacttca tggcgatcca gcccgcccaa tgagcacgcc cccttccgca
      661 ggcaaacagg tctacgccaa gatggccgtg atcggctgcg gcctgatcgg cgcctcggtg
      721 atcctggccg cgcgggcctc cggggccgtg ggcgaggtcg ccgtggccga cgcctcgccc
      781 gccgcccgcg agcggatcac agcgctgggc ttggccgacc tcgtcaccgc cgacccggcc
      841 gaggccgtcc gcggcgctga tctggtggtc ttcgccgtgc cggtcatggc catgggcgag
      901 gccgcccgcg ccgccgcgcc cgcgctcaag cccggcgcta cggccaccga tgtgggctcg
      961 gtcaaggccg cggtcggcga ggcgctgctg gaggctctcc ccgcgtcgtg cttcatcgtc
     1021 cccggccacc cgatcgccgg cacagagcag tcgggccccg acgccggctt cgccgagctc
     1081 ttccagaacc gctgggtgat cctcacgccc caggaccgcg acgacgagcc ctacgccgac
     1141 gccgtccagc gcctgcgcga cttctggacc gcgctgggct ccaacgtcga gctgatggac
     1201 gacaagcacc acgacctggt cctggccgtc accagccacc tgccccacct gatcgcctac
     1261 aatatcgtgg gcacggcggc cgatctggaa ggcgtcaccc gcggtgaggt gatgaagtat
     1321 tccgccggcg gcttccgcga cttcacccgc atcgcggcgt ccgaccccac catgtggcgc
     1381 gacgtgttcc tggccaacaa ggacgcggtg ctggaggtcc tgggccgctt taccgaggac
     1441 ctgcaggcgc tcagccgcgc catccgctgg agcgagggcg acaagctgtt cgagcttttt
     1501 tcccggaccc gcgagatccg ccgcggcatc atcgccgccg gccaggaaag cgccgagccg
     1561 aacttcggcc gcgatcatcg gcacccctcg gaggcagacg cggacagccc ccaagctgcg
     1621 ccggacacaa aagcgcaata gaggcagcgc cccatcgggg ccgactcacc ttccgcgagc
     1681 cgcaggcaag catgcatgag tgacgaccag gaacgcgccg gcttcgaagc cctgacccag
     1741 gccggcgccg acgaggacgc cgcgcggggc ctgggggccc ggctgaaggc cagtcctcag
     1801 cccaacgacc tcaaggccct ggccgcgctc tggatccacg gcgcggtcgc ggcgcccgag
     1861 agcattcccg gcatctatga cgcggccgcc gagggctatc tcggagagcc cgtgggcgcc
     1921 aagcccgtgc ccaccgacac cacccagccg ccggagccga tcccggccgc cttctgggcg
     1981 ggcctgtggg agctgctgga ggaaccccgc gggggcctgg aggccgtcaa cctcaccacc
     2041 aagaccgcgg ccctggccgg cctgacttcg ccgggcgttc aggcccgggt cggcaaggcc
     2101 agcctcgcct atccgggcgt gccggccgcc gtggcccagg gctatccgca caagttcaag
     2161 ctcgagaccc tggcccgctg cccgccggac tcgctggggg gccaattcca cgcgctcatc
     2221 gtcgacaacg gcttcgacct ggaggtcctc gaccgctcgg cgctcggcct cgacaagctg
     2281 ccggcgccgc tggactacct caacgcccgc atcctgcagt gccacgacct gtggcacatc
     2341 gtcggcggct accagaccac cgccctgcac gaggtggcga tctcggcctt ccagctggcc
     2401 cagttcggcc accactattc gtcgatgttc ctgggcatgg tgctgacccg catcgccttc
     2461 gagcggccgg agggcggggc gatcatgctg ccgatcatcc tgaccgcctg ggcccacggc
     2521 cgccgcaccc cgccgctgct gggcgtcaac tgggagtcgg tctggaacaa gcccctggcc
     2581 gacgtccgca agcagctcgg cgtcaccccc tacgtctcgc ccttccccgc cgacctcttc
     2641 gagcagctgt cggtcgccgc ctagggcttg cctttcgcga cattcacctc taggggtgaa
     2701 tgatgcttga cgcgacgctc atcgccatcg ccgaccccac ccgccgcgcg atcctcagcc
     2761 ggctcgctga gggcgaggcc cgcgtcaccg agctcgcccg gcccttcgcc atctcgctga
     2821 attcggtctc caagcacatc cgcatgctgg agcgtggcca gctcgtccgc cgccgcatcg
     2881 agggccgcga gcacatcctg gccctcaacc gcgaaggcct cgacgaggcc gcccgctgga
     2941 tcgaggaaca gcgcgcgctc tgggcctggc gcctgggcaa actcgacgac atcctcaagg
     3001 agacaacgcc atgagcgtga cggaaaagac cggccaggtg gtggtgacca aacactacga
     3061 cgtaagcccc gagcaggtgt tcgacgcctt cctgaacgtg gagaccgcgc ggcgcttcct
     3121 gttcgccacc gcgaccggcg agatgctggt cgccgagatc gacccacgcg tcggcggccg
     3181 cttcaccttc accgagcgcc ggccggagat gggggacgtc ctgcacaccg gcgaatatct
     3241 ggagatcgac cggccgcgcc gcctggtctt caccttcggc gtcccgcagt tcaacccggc
     3301 ctacacccgc gtcaccgtcg agatcgtcgc ctcaggctca ggctgcgccc tcaccctgac
     3361 caacgacgac gtccccgccg aatacgccga aggcaaccag gacggctgga gccgcatcct
     3421 ggccagcctc gtcccggcga tatcaggcgt caaggcggcg ggctgggcgt gatctcatag
     3481 atcctcccct cagggggagg tggcccgaag ggccggaggg gtcagagact cacggtccgc
     3541 tgaacttccc gaagctgcgg tcgggcgtgc cgcggaacag
//
LOCUS       DATAJL010000231         5347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42566,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000231 DATAJL010000000
VERSION     DATAJL010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5347
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42566"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..307
                     /locus_tag="VHN39_04375"
     CDS             <1..307
                     /locus_tag="VHN39_04375"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF018884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEX2815600.1"
                     /translation="VRELRLDGGPALCVADHFPFPVETHRLEPGETLIAYTDGITEAQ
                     DAAGQLFGREGAMKIVGAFATRPLTELVDGLVAAVLAFEAGGEPSDDVTVLALRRRA"
     gene            complement(304..885)
                     /locus_tag="VHN39_04380"
     CDS             complement(304..885)
                     /locus_tag="VHN39_04380"
                     /inference="COORDINATES: protein motif:HMM:NF012894.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEX2815601.1"
                     /translation="MRACALAALLPLLAACATAGGSVTLLPGEPGMNTGAVAVFDPKS
                     GAEQGSLTDANTQAQLNGKFAAKAADPKLYAALTDALPPPAAHFTLYFIEGATKLTPE
                     SEPELKKVFAELAKRAGAEVQITGHTDTVGSEGDNDMLSLKRAREIREALIAQGLNPT
                     ISRAVGRGEREPLVPTPDNTAEPRNRRVEITVR"
     gene            complement(882..1316)
                     /locus_tag="VHN39_04385"
     CDS             complement(882..1316)
                     /locus_tag="VHN39_04385"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEX2815602.1"
                     /translation="MLKSIAAGLLIAAAMSTQALAADIGRIKTVVGQASVVRGTSTLP
                     ATPGQTLSVKDVLTTGPDGRIGVTFIDNSRFAVGPNARVALTEFQFDDTTHKGSSLTQ
                     VDRGSLAIVSGQIAKENKDGMKVKTPTSLLAARGTRFVVDVP"
     gene            1389..1775
                     /locus_tag="VHN39_04390"
     CDS             1389..1775
                     /locus_tag="VHN39_04390"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: protein motif:HMM:NF024970.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815603.1"
                     /translation="MTARLPVGGGTVARAIAVARRFAAAVALPPESADRLVVIVEEWV
                     ANIVEHGRAPAGSLVVLRLERVGQGVRVAVSDAGVAFDSRTAEDQGPNLERGGGAGLA
                     LIRSWSEVEDYRRSGGRNRLVLRSRS"
     gene            complement(1759..2091)
                     /gene="erpA"
                     /locus_tag="VHN39_04395"
     CDS             complement(1759..2091)
                     /gene="erpA"
                     /locus_tag="VHN39_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HEX2815604.1"
                     /translation="MTSSELTLSPSAARRIHAIGKSEGKALMLRVAVEGGGCSGFQYL
                     FDLVDEAQPDDLRIERDGAAALVDELSLVLLKGSEIDFVDELAGAEFRVRNPNAKTSC
                     GCGVSFSI"
     gene            2176..3354
                     /locus_tag="VHN39_04400"
     CDS             2176..3354
                     /locus_tag="VHN39_04400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016793 - triphosphoric monoester
                     hydrolase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HEX2815605.1"
                     /translation="MAATIPTRAPYAEDAAKSRGRKVAESESATRTPFARDRDRIIHC
                     TAFRRLKEKTQVFVAHEGDHFRTRLTHSLEVAQIARSLATALGLDADLAETIALAHDL
                     GHPPFGHAGEDELQVQMQPYGGFDHNVQTFRVVTKLERRYPRWEGLNLTWETLEGIIK
                     HNGPVIDKLEKPSWSAIAEFDAEYDLKLGGWASAEAQVAALADDIAYNNHDVDDGVQA
                     GLFQLEELREIPLIGPHVASAAADYPNCDVGILRLEAVRRMIGAMVGDVLAETRRRAA
                     ADKVGSPEDVRALGHGLVAFSREMVEDLSQLRAFLMERMYRHWRVNRTRSQARRMLAE
                     MFQLFLGEPDVLPGEWYARTEGRDEAGKARVVCDYIAGMTDRYAIEEHRKLFHLDSLH
                     "
     gene            complement(3408..4652)
                     /locus_tag="VHN39_04405"
     CDS             complement(3408..4652)
                     /locus_tag="VHN39_04405"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HEX2815606.1"
                     /translation="MAAQALAGGRGLDAGQLLRQAEAEAPRHPLVLNEIGKRRLMAGD
                     PTGAFQVLDEAMEAAPEEPALWLNLAAALRGLNRRDEELRALNKALQFEPTNIRALLQ
                     VASLHELQGDVRTAAAAYRKALQAISPSADLPPEMRPVLDHAKRTVDADAAALEAFIE
                     DRITDLRARHANSTLSRFDKSLATLLRKRRVYRPQPTFIYVPELPAIEFFPREDFPWL
                     DQVEASADDIRAELTQALADGPQTLEPYVSVDVTPDEKWRALNKSRSWAVFFLWKAGE
                     AITANMARCPKTVKALSAWPKCELPGSAPTAVFSILEPRTRIPPHTGVNNARLICHLP
                     LIVPPGCGFRVGAETREWEPGKAFVFDDTIEHEAWNDSDQARAVLIFDIWNPYTTDAE
                     REMVSAVTTGVEQYYGSLPAYL"
     gene            4981..>5347
                     /locus_tag="VHN39_04410"
     CDS             4981..>5347
                     /locus_tag="VHN39_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEX2815607.1"
                     /translation="MSDHERGAYTPPTDAPLSFDARQPVRGSRPIPFTLIISILVLLG
                     LAAAIFVFYRSGVRQAGQPPQTVGAPVAGMKTPAPAEAQPQDPAAGLQIYKTEGGKGA
                     LGPSAPQFTAPPEQPQARAE"
BASE COUNT          811 a         1810 c         1862 g          864 t
ORIGIN      
        1 ggtccgcgaa ctgcgcctcg acggcggccc agccctctgc gtcgcagacc atttcccgtt
       61 ccctgtggag acccatcgcc tggagcccgg agagactctg atcgcctaca ccgacgggat
      121 caccgaggcg caggacgcgg cgggccagct cttcggccgc gagggcgcaa tgaagatcgt
      181 cggcgctttc gccacgcgcc cgctgacgga actggtcgat ggccttgtcg ccgcagtgct
      241 ggccttcgag gccggtgggg agcccagcga cgacgtgacg gtgctggccc tgcggcgccg
      301 tgcctagcgg acggtgatct ccacccggcg gttgcgcggc tcagcggtgt tgtcgggggt
      361 cggcaccagg ggctcgcgct cgccgcggcc gaccgcgcgg ctgatcgtcg ggttcaggcc
      421 ctgggcgatt agggcctcgc ggatctcccg ggcgcgcttc agggacagca tgtcgttgtc
      481 gccttccgat cccaccgtgt cggtgtggcc ggtgatctgc acctcggcgc ccgcgcgctt
      541 ggcgagttca gcaaacacct tcttcagttc cggctcggac tccggggtga gcttggtggc
      601 gccctcgatg aaatagaggg tgaagtgggc cgctggcggc ggcagggcgt cggtcagggc
      661 cgcatagagc ttggggtcgg cggccttggc ggcgaacttg ccgttgagct gggcctgggt
      721 gttggcgtct gtgagggagc cctgttccgc gccgctcttg gggtcgaaca cagccacggc
      781 gccggtattc atcccgggct cgccgggcaa cagggtcacc gagccaccgg cggtggcgca
      841 ggcggcgagc agcggcagca gggcggccag tgcgcaagcc ctcacggaac gtcgaccacg
      901 aagcgcgtgc cgcgggcggc gagcagcgag gtcggtgtct tcaccttcat gccgtccttg
      961 ttttccttgg cgatctggcc ggagacgatg gccagcgagc cgcggtcgac ctgggtcagg
     1021 gaactgccct tgtgtgtcgt gtcgtcgaac tggaactcgg tcagcgcgac acgggcgttg
     1081 gggccgaccg cgaagcggct gttgtcgatg aaggtcacgc cgatccgccc gtccgggccg
     1141 gtggtcagca catccttgac gctgagcgtc tggccgggcg tggcgggcag cgtgctcgtt
     1201 ccgcggacaa cactggcctg gccgacaacc gtcttgatgc gtccgatgtc ggcggcgagc
     1261 gcctgcgtcg acatggcggc cgcgatcagc aatcctgccg cgatcgattt cagcatcttc
     1321 aggtcccccc agacataagg ccgcctgtca tagcaaagag ccgcgccggt tccgactccc
     1381 aacccgcgat gacggcccgc ctgcccgtgg gcggcgggac cgtggcgcgc gccatagccg
     1441 tcgcccggcg gttcgcggcg gctgtggccc tgccgccgga gagcgctgac cgcctggtgg
     1501 tgatcgtcga ggagtgggtg gccaatatcg ttgaacatgg gcgcgcgccg gccggcagcc
     1561 tggtggtcct tcgcctggag cgggtcgggc agggcgtgcg cgtggccgtc agcgacgccg
     1621 gcgtcgcctt cgattcgcgg acggcggagg accaggggcc gaacctggag cgcggcgggg
     1681 gcgcagggct cgcgctgatc cgcagctgga gcgaggtcga ggactatcgc cgcagcggcg
     1741 gccgcaaccg gctggttctc agatcgagaa gctgacgccg cagccgcagc tggtcttggc
     1801 gttggggttg cgcacgcgga attcggcgcc ggcgagctcg tcaacgaagt cgatctccga
     1861 gcccttcagc agtaccagcg acagctcgtc caccagggcc gcggccccgt cgcgttcgat
     1921 ccgcagatcg tcgggctggg cctcgtccac caggtcgaac aggtactgga agcccgaaca
     1981 cccgccgcct tccaccgcca cgcgcagcat cagcgccttg ccctcggact tgccgatggc
     2041 gtggatccgt cgcgcagccg agggggaaag tgtgagttcg cttgaggtca tgacggttag
     2101 acgaatgaaa cgcctcgact atatgagggt gcgcgcggct tcgaccaagc cccagccgcc
     2161 cgatagatgg atttgatggc cgccacgatc ccgaccagag ctccttacgc cgaagacgct
     2221 gcgaagtccc gcggtcggaa ggtcgcggag tccgagagtg cgacgcggac acccttcgcc
     2281 cgtgaccgcg accgcatcat ccactgcacg gctttccgaa ggctgaagga gaagacccag
     2341 gtcttcgtgg cccacgaggg cgaccacttc cgcacccgcc tgacccacag tctcgaagtg
     2401 gcgcagattg cgcggtccct ggccacggcg ctgggcctgg acgccgacct cgccgagacc
     2461 atcgcgctcg cccacgacct cggccacccg cccttcggcc acgccggcga ggacgagctt
     2521 caggtgcaga tgcagcccta cggcggcttc gaccacaatg tgcagacctt ccgggtggtg
     2581 accaagctgg agcgccgcta tccgcgctgg gagggcctga acctcacctg ggagaccctg
     2641 gaagggatca tcaagcacaa cggcccggtg atcgataagc tcgaaaagcc ctcctggagc
     2701 gctatcgccg agttcgacgc cgaatatgat ctcaagctcg gcggctgggc ctcggcggag
     2761 gcccaggtgg ccgccctggc cgacgacatc gcctacaaca accacgacgt ggatgacggg
     2821 gtgcaggccg ggctcttcca gctagaggag ctgcgcgaaa tcccgctgat cgggccgcat
     2881 gtggccagcg ccgcggccga ctatcccaac tgcgacgtcg gcatcctcag gcttgaggcc
     2941 gtgcgtcgga tgatcggggc catggtcggc gatgtgctgg ccgaaacccg ccgccgcgcc
     3001 gccgccgaca aggtgggctc gcccgaagac gtccgcgcgc tgggccacgg cctggtcgcc
     3061 ttttcccgcg agatggtcga ggacctctcg cagctccggg ccttcctgat ggagcggatg
     3121 taccgacact ggcgggtcaa ccgcacccgc agccaggccc ggcgcatgct ggctgagatg
     3181 ttccagctgt tcctgggcga gcccgacgtc ctgcccggcg aatggtacgc ccgcaccgaa
     3241 gggcgcgacg aggctggcaa ggcccgggtg gtctgcgact acatcgccgg catgaccgac
     3301 cgctacgcga tcgaagagca ccgcaagctc ttccacctgg actcgctgca ctagccgcct
     3361 acctcctgcc gcttcgcggg ggaggtaggg gcgctaccag cgaagcctca gagataggcc
     3421 ggcagcgagc cgtagtattg ctcgacgccg gtcgtcaccg cgctgaccat ctcgcgctcg
     3481 gcgtcggtgg tgtaggggtt ccagatgtcg aagatcagga cggcgcgggc ctggtcgctg
     3541 tcgttccagg cttcatgttc gatggtgtcg tcgaagacga aagccttgcc gggctcccat
     3601 tcgcgggtct cggccccgac cctgaagccg cagccggggg gaacgatcag cggcaggtgg
     3661 cagatcaggc gggcgttgtt gacgccggtg tgcggcggaa tacgagtcct gggctcaagg
     3721 atcgaaaaca cggccgttgg cgctgagccc ggcagttcac acttgggcca ggcggagagc
     3781 gccttcacgg tcttggggca gcgagccatg ttcgcggtga tcgcctcgcc cgccttccac
     3841 aggaagaaga ccgcccagct gcgagacttg ttcagcgccc gccacttctc atccggcgtc
     3901 acgtcgaccg agacgtaggg ctcgagggtc tgcggcccgt cagccagcgc ctgggtcagt
     3961 tcggcgcgga tgtcgtcggc ggaggcctcg acctgatcaa gccaggggaa gtcctcgcgc
     4021 ggaaagaact cgatagccgg gagctccggg acatagatga aggtcggttg cggccggtag
     4081 acgcgccgtt tccgcagcaa ggtggcgagc gacttgtcga accggctgag cgtcgagttg
     4141 gcgtggcgcg cccgcaggtc cgtaatgcgg tcctcgatga aagcttcgag ggcggcggcg
     4201 tcggcgtcga cggtgcgctt ggcatggtcg agcactggac gcatctccgg cggcaggtcg
     4261 gcgctgggcg agatcgcctg cagcgccttg cggtaggcgg cggctgcggt gcgaacgtca
     4321 ccttgcagct cgtgcagcga agcgacctga agcaaggcgc gtatgttggt cggctcgaac
     4381 tgaagggcct tgttgagcgc cctcagctcc tcgtccctgc ggttcaagcc gcgcaaggcg
     4441 gcggcgaggt tcagccacaa ggccggctct tccggcgcgg cttccatcgc ctcatcgagg
     4501 acctggaagg ccccggtggg atcgccggcc atgagccttc gcttgccgat ctcgttcagc
     4561 accagcggat gcctgggcgc ctccgcctcg gcctgccgca gaagctgccc cgcgtccagc
     4621 ccgcgcccgc ccgccaaggc ctgtgcggcc atggtcagga gttggcggat ccgccggtcg
     4681 tcgcccctgt caaggcggtc tccacttgaa tccacgcgaa cctgccgacc tcaatccgta
     4741 cagcctcacc atgagacggc ttctcaattg ctccgcggat atttcttata tgtttcttat
     4801 aaagataaat cggtccggag accggtggtt tccagggctg tcgccgcgcg gccctaattc
     4861 cggcgcggtc cgcccacaga aaatgcccct cttggcgggt cgccgggcgc gcgctcgtct
     4921 agactgccgc ctcaagtacg cgattcggtt tgccggacgc gccgtctgcg ggagccttcg
     4981 atgtccgatc atgagcgcgg cgcctacacg ccccccaccg atgcgcctct gagctttgac
     5041 gcccgccagc cggtgcgcgg atcgcggccg atccccttca ccctgatcat ctcgatcctg
     5101 gtcctgttgg ggctggcggc ggcgatcttc gtcttctacc gctccggcgt ccgccaggcg
     5161 ggccagccgc cgcagacggt gggcgccccg gtggccggca tgaagacccc ggcgcccgcc
     5221 gaggcccaac cgcaggaccc ggccgccggc ctgcagatct acaagaccga gggcggcaag
     5281 ggcgcgcttg gcccctcggc gccgcagttc accgccccgc cggaacagcc ccaggcccgc
     5341 gccgagc
//
LOCUS       DATAJL010000232         2936 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29499,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000232 DATAJL010000000
VERSION     DATAJL010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29499"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1705
                     /locus_tag="VHN39_04415"
     CDS             <1..1705
                     /locus_tag="VHN39_04415"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEX2815608.1"
                     /translation="GVSEADIETAEKRGYDSGLKVTHPFDPDQRLPVWIANFILMDYG
                     TGAIFACPAHDQRDLDFCRKYKLPVIPVVLPPGEDPATFAVGDEAYTGPGVIYHSQFL
                     DGLDIETAKAAAISRIEAQKQGEGATVYRLRDWGVARQRGWGCPIPVVHCPIDGVVPL
                     PKTALPIALPADPDFGKPGNALERHPTWKHTVCPKCGGAAIRETDTLDTFVDSSWYFA
                     RFANPDFPRPIDKAAADYWLPVDQYIGGIEHAVLHLLYARFVTKALADDGQLSVREPF
                     AGLFTQGMVTHETYRRQDGEWLEPHEVEVIVEGSSRRAKLLENGADVVIGDVEKMSKS
                     KKNTVPPGEIFEAYGVDAARLFVLSDSPPERDAQWSNAGVAGAWRFVNRVWDEFDSQP
                     ASATAGADDEAATALRRATHRLTKQVTEAIDSFRFNSGIARLYEFLNLLKANPASGAS
                     PALLAARQEALSAFSRLIAPFTPHLAEECWVRVGGQGMVAMAPWPAFDPALTEDAVRV
                     LPVQVNGKRRGEISAPAGASAADVEKIVLDDPEIARRLEGLTIRKVIVVPDRIVNIVA
                     A"
     gene            1705..2286
                     /gene="lptE"
                     /locus_tag="VHN39_04420"
     CDS             1705..2286
                     /gene="lptE"
                     /locus_tag="VHN39_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HEX2815609.1"
                     /translation="MRRALALGAVAASLALTCVGLGGCGFTPLYGAPGVTSKLASIKV
                     IAPDGRTGFLVRQHLEDAFATNRGAPAAYAMKLSLSEARYPRGIRTDNVATRYEYVIT
                     ADYSLANQPSGDVAKKGRVRVEVTYDSADQPYASIAAQQDAQDRAAEEAARRIQLEVA
                     AWLATGEPSAKKPQKVTPAPANSVTPSGLPAGL"
     gene            2290..>2936
                     /locus_tag="VHN39_04425"
     CDS             2290..>2936
                     /locus_tag="VHN39_04425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEX2815610.1"
                     /translation="MILGKRPDIERFLSRPDADIRAALIYGRDLGVVRDRGHQLAGKI
                     AKDPNDPFDVAQLTDGDLDNDAARLESELSAQSLMGGRRLVRLRFGTEKASLDKLAAE
                     ALTRHAAGELNPDAFLLIEAGALGRDSALRKAAEKAAGAATIPCYEDEPGDVARQVRE
                     ALAKDGLSLNAEALAVFVARMPKERGVARQEIERLALFLGPGSGAVATPADLEPFL"
BASE COUNT          451 a         1078 c          998 g          409 t
ORIGIN      
        1 cggcgtttcg gaggcggaca tcgaaaccgc cgaaaagcgc ggctacgaca gcggcctcaa
       61 ggtcacccat ccgttcgacc ctgaccagcg cctgccggtc tggatcgcca acttcatcct
      121 gatggactac ggaaccggcg cgatcttcgc ctgtccggcc catgaccagc gcgacctgga
      181 tttctgccgc aaatacaagc ttccggtgat cccggtggtg ctgccgcccg gcgaggaccc
      241 tgcgacgttc gcggtgggtg acgaggccta caccgggccg ggcgtgatct accactcgca
      301 gttcctggac ggcctggata tcgagaccgc caaggccgcg gctatttcgc gtatcgaggc
      361 ccagaagcag ggcgagggcg cgacggtcta tcgcctgcgc gactggggcg tggcccgcca
      421 gcgcggctgg ggctgcccga ttcccgtggt ccactgcccg atcgacggcg tggtgccgct
      481 gccgaagacc gcgcttccca tcgccctgcc ggcggaccct gacttcggca aacccggcaa
      541 tgcgctggag cggcatccga cctggaaaca caccgtctgc cccaaatgcg gcggcgcggc
      601 gatccgcgag acggacacgc tggacacttt cgtcgacagt tcctggtact tcgcccggtt
      661 cgccaacccg gacttccccc ggccgatcga caaggcggcg gccgactact ggctgccggt
      721 cgaccagtac atcggcggca tcgagcacgc cgtcctgcac ctgctctatg cccggttcgt
      781 caccaaggcg ctggctgacg acggccagct cagcgtgcgc gagccgttcg cggggctctt
      841 cacccagggc atggtcaccc acgagaccta ccgccgacag gacggcgagt ggctggagcc
      901 gcacgaggtc gaggtcatcg tcgagggcag ttcgcggcgc gcgaagctcc tggaaaacgg
      961 cgcggacgtg gtgatcggcg acgtcgagaa gatgtcgaag tcgaagaaga acacggtgcc
     1021 gccaggggag atcttcgagg cctatggcgt ggacgccgcg cggctgttcg tgctctccga
     1081 cagcccgccg gagcgcgacg cccagtggtc caacgcgggc gtcgccggcg cctggcgctt
     1141 cgtgaaccgg gtctgggacg agttcgacag ccagccggcc tcggcgacgg cgggcgccga
     1201 cgacgaggcg gcgacggcgc tccgccgcgc cacgcaccgg ctgaccaaac aggtcaccga
     1261 ggccatcgac agcttccggt tcaactccgg catcgcgcgg ctctacgagt tcctgaatct
     1321 gctaaaggcc aatccggcct ccggggcctc gccggccctg ctggccgccc gccaggaggc
     1381 cctgtcggcc ttctcccgcc tgatcgcccc cttcaccccg cacctggcgg aagaatgctg
     1441 ggtccgggtc ggcggacagg gcatggtggc catggcgccc tggcccgcgt tcgacccggc
     1501 gctgacggaa gacgctgtcc gcgtcctgcc ggtgcaggtg aacggcaagc gtcgaggcga
     1561 aatctcggct ccggcggggg cttcggcggc ggacgtggag aagatcgtgc ttgacgatcc
     1621 ggagatcgcg aggcgcctag agggcctgac catccgcaag gtgatcgtgg tgcccgaccg
     1681 catcgtcaac atcgtggccg cctgatgcgg cgcgccctcg ccctcggcgc cgtcgccgcc
     1741 agcctggcgc tcacctgcgt gggcctgggc ggttgcggct tcacgccgct ctacggcgcg
     1801 cccggcgtca cctcgaagct cgccagcatc aaggtgatcg cgccggacgg ccgcacgggc
     1861 ttcctggtgc gccagcacct ggaggacgcc ttcgccacca accgcggcgc gccggcggcc
     1921 tacgccatga agctgtcgct gtccgaggcg cgctatccgc gcggcatccg caccgacaac
     1981 gtcgccaccc gctacgagta tgtgatcacc gcggactaca gcctggccaa ccagccctct
     2041 ggcgacgtgg ccaagaaggg ccgggtccgc gtcgaggtca cctacgactc cgccgaccag
     2101 ccctacgcct ccatcgccgc ccagcaggac gcccaggacc gggccgccga ggaggccgcc
     2161 cggcgcatcc agctggaggt cgccgcctgg ctggccaccg gcgagccctc ggccaagaaa
     2221 ccgcagaagg tgacgccggc gccggccaac tcggtcaccc cgtcagggct tccggcaggc
     2281 ctttagcctg tgatcctcgg caagcgcccc gatatcgaac gcttcctcag ccggcctgac
     2341 gcggacatcc gcgcggccct gatctatggc cgcgacctgg gggtggtgcg cgaccgcggc
     2401 caccagctgg ccgggaagat cgccaaggac cccaatgacc ccttcgacgt cgcccagctc
     2461 accgacggcg acctggacaa tgacgccgcg cgcctggaga gcgagctctc ggcccagtcg
     2521 ctgatgggcg ggcggcggct ggtccgcctg cggttcggga ccgaaaaagc cagcctcgac
     2581 aagctggccg ccgaggctct gacccgccac gccgccggcg aactcaatcc cgacgccttc
     2641 ctgctgatcg aggcgggggc gctcggccgc gattccgcgc tgcgcaaggc cgccgagaag
     2701 gcggcgggcg cggcgaccat cccctgctac gaggacgagc ccggcgacgt ggcccgtcag
     2761 gtccgcgagg ccctggccaa ggacggtctg tcgctcaacg ccgaggcgct cgccgtcttc
     2821 gtggcccgca tgcccaagga gcgcggcgtc gcgcgccagg agatcgagcg gctggcgctg
     2881 ttcctgggcc ccggcagcgg cgccgtcgcc acgcccgccg atctggagcc gttcct
//
LOCUS       DATAJL010000233         2836 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29522,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000233 DATAJL010000000
VERSION     DATAJL010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29522"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VHN39_04430"
     CDS             <1..655
                     /locus_tag="VHN39_04430"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX2815611.1"
                     /translation="VYTLIARGKVFEDLATDARLMALISRFLEGNFLLSATHAINLRP
                     GETAQGIHTDDGFYRQPRSSPAVGISVIGAIDPFTEENGATQVIPGSHLWSEEEIAER
                     RKGPGGLEALLVPLEVPAGACFVFPGKLLHQGGANRTDKPRLAFTNQYCAGWARPQEN
                     FFLSVPKEVVRAMSPRAQALLGYELWPSFMGMVTASHPAKSLEPGWVPPIVAQARRP"
     gene            complement(706..1041)
                     /locus_tag="VHN39_04435"
     CDS             complement(706..1041)
                     /locus_tag="VHN39_04435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018082066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RcnB family protein"
                     /protein_id="HEX2815612.1"
                     /translation="MKRLLTGALALTLLTGTAAMAQPDHRDDQRGQDQQANDHRGADQ
                     RQAQHHWGRGERLPTAYYQDRSHDVDYRAHHLRAPPRGYRWVQTDDNNFAMVALTTGL
                     IASIIASNH"
     gene            complement(1159..1899)
                     /locus_tag="VHN39_04440"
     CDS             complement(1159..1899)
                     /locus_tag="VHN39_04440"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2815613.1"
                     /translation="MIEQTVDIPTKHGATTTFIVHPERDGAHPVVLFFMDAPAIREEL
                     RDMARRIASAGYYVMLPNLYYRSGVMELADLPPPATPEAGRARMFELMGSITIPLVMD
                     DGDALLEFADRDPAASKGKIATLGYCMSGQYAISFAARYPDRVAAAASIYGVQLVTDK
                     ADSPHLAAQKTKGELYFACAETDHWAPLEMVQALDQSVKANNLNAEVELYAGVEHGFA
                     FPQRAAYDKAAAERHWERLFALWRRQLG"
     gene            complement(1912..2730)
                     /locus_tag="VHN39_04445"
     CDS             complement(1912..2730)
                     /locus_tag="VHN39_04445"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815614.1"
                     /translation="MSEPRINPNGSLKGKNALVTGASRGIGEAIAARLAMEGANVVVS
                     ARTAESGESRLSGTLHETVDRIKRAGGQAMFIKADLAQSVERERLVEEAAAAYGPIDI
                     LVNNAAITYFMPVADFPEKRFKLMMEVQVYAPFHLAQLVLPSMRAKKQGWIVNISSGA
                     GIHPKAPYTRRGGGTVYGMCKAALERFTTGLASEVYDDGIAVNVVSPGLVDTPGVAVH
                     GLITEATKDRVQPIKFIAEAVYQLASGDPKTLTGTINYAEPFLKAQGVEPAELV"
BASE COUNT          437 a          938 c          969 g          492 t
ORIGIN      
        1 ggtctacacc ctgatcgccc gcggcaaggt gttcgaggac ctggcgaccg acgcccgcct
       61 gatggcgctt atcagccgct tcctggaagg gaacttcctg ctctcggcca cccacgccat
      121 caacctcagg cccggtgaga ctgcgcaagg catccacacc gacgacggct tctatcgcca
      181 gccgcggtcg agccccgcgg tgggcatctc cgtgatcggc gccatcgacc ccttcaccga
      241 agagaacggc gccacgcagg tgattcccgg cagccacctg tggagcgaag aggagatcgc
      301 cgagcggcgg aagggccccg gcggtcttga ggccctgctc gtcccgctgg aagtccccgc
      361 cggcgcctgt ttcgttttcc cgggcaagct gctgcaccag ggcggggcga accggacgga
      421 caaaccacgc ctggccttca ccaatcagta ctgcgccggc tgggcccggc cgcaggagaa
      481 cttcttcctc tccgtgccca aggaggtcgt gcgggcgatg tcgccccgcg cccaggcgct
      541 gctgggctac gagctgtggc cgagtttcat gggcatggtc acagcctcgc atccggccaa
      601 gtcgctggag ccaggctggg tcccaccgat cgtggcccag gccaggcgcc catagcaaag
      661 tccccccgcc ttgcggcgga gggacttcga gcttggctgg gtcgcctagt ggttagaggc
      721 gatgatcgag gcgatcagac ccgtggtcag ggccaccatg gcgaagttgt tgtcatcggt
      781 ctggacccag cgatagccac ggggcggcgc gcgcagatga tgggcgcggt agtccacgtc
      841 gtggctgcgg tcctgataat aggcggtcgg cagccgctcg ccgcgacccc agtggtgttg
      901 ggcctggcgc tggtcggcgc cccggtgatc gttggcttgt tggtcttggc cgcgctggtc
      961 gtcacgatgg tccggttggg ccattgcggc ggtcccggtc agtagggtga gcgcgagggc
     1021 gccggtgagc agacgtttca tggttggact cctatccagg accgcgaaac taatgctcgc
     1081 ggcctgagcc cgacctgaac gccacgcctc agcctaggtt caccttatgt cagccaggaa
     1141 acacaataag tccggacgct agccgagctg gcgtctccag agcgcgaaca gccgttccca
     1201 atgccgctcg gccgcggcct tgtcgtaggc cgcgcgctgc ggaaaagcga aaccgtgctc
     1261 gacgccggcg tagagctcca cctcggcgtt gaggttgttg gccttcaccg actggtcgag
     1321 cgcctggacc atctccagcg gcgcccagtg gtcggtctcc gcgcaggcga aatagagttc
     1381 gcccttggtc ttctgggccg cgaggtgcgg gctgtcggcc ttgtcggtga ccagttgcac
     1441 cccgtagatc gaagccgccg cggcgacccg gtccggatag cgcgcggcga agctgatcgc
     1501 gtactgccca ctcatgcagt agccgagggt ggcgatcttg cccttgctgg cggccgggtc
     1561 gcggtcggcg aactccagca gcgcgtcgcc gtcgtccatg accagcggga tggtgatcga
     1621 gcccatcagc tcgaacatcc gcgcccgccc ggcctccggc gtggccggcg gcggcaggtc
     1681 ggccagctcc atcacgccgg agcggtaata gaggttgggc agcatgacgt agtagccggc
     1741 cgaggcgatc cgccgggcca tgtcgcgcag ctcctcgcgg atggccggcg cgtccatgaa
     1801 gaacaacacc accgggtgcg ccccatcccg ttccggatgg acgatgaagg tggtggtcgc
     1861 cccgtgcttg gtggggatgt cgacggtctg ctcgatcacg cggcccctcc ttcagaccag
     1921 ttcggccggt tcgacgccct gcgccttcag gaagggctcg gcgtagttga tggtgccggt
     1981 gagcgtcttc ggatcgccag acgccagttg atagacggcc tcggcgatga acttgatcgg
     2041 ctggacgcgg tccttggtgg cctcggtgat caggccgtgg acggcgacgc ccggggtgtc
     2101 gacgaggccg ggcgaaacca cgttcaccgc gataccgtcg tcatagacct cggaggccag
     2161 gcccgtcgtg aaccgctcga gggctgcctt gcacatgccg tagaccgtgc cgccgccgcg
     2221 ccgggtgtag ggcgccttgg gatgaatccc cgcccccgag gagatgttga cgatccagcc
     2281 ctgcttcttc gcccgcatcg acggcaggac cagctgggcc agatggaacg gcgcatagac
     2341 ctgcacctcc atcatcagct tgaaacgctt ctccggaaaa tccgcgaccg gcatgaaata
     2401 ggtgatggcg gcgttgttca cgaggatatc gatcgggccg taggcggccg cggcctcctc
     2461 caccaggcgc tcgcgttcca ccgactgagc gaggtcggcc ttgatgaaca tcgcctggcc
     2521 gccggcgcgt ttgatgcgat ccacggtctc gtgcagcgta cccgacagcc ggctctcgcc
     2581 gctctcggct gtgcgcgcgg agaccacgac attggcgccc tccatggcca agcgcgcggc
     2641 gatcgcctcg ccgatgccgc ggctggcgcc ggtgaccagg gcgttctttc ccttcaggga
     2701 gccattggga ttgatgcggg gctcgctcat ggccgtctcc tccaaatgtc ttttgttcta
     2761 atgggcgaaa gctcgcgcgg ctgacggcga gacgcaaggc tggttgcgca ggggctcggc
     2821 tggcggttca ctggag
//
LOCUS       DATAJL010000234         2370 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29565,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000234 DATAJL010000000
VERSION     DATAJL010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29565"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VHN39_04450"
     CDS             <1..232
                     /locus_tag="VHN39_04450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815615.1"
                     /translation="VTFSAIDSSGQYQLALSWKVQGTAPLWTYPLIVFEQTARFQGSL
                     SQKDGEGWKQIATFDTLGFCEYTSKWIGGGPE"
     gene            271..1467
                     /locus_tag="VHN39_04455"
     CDS             271..1467
                     /locus_tag="VHN39_04455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815616.1"
                     /translation="MSGWLPAWRAQFLDIENGLPLNRPAGMNVDRIMSHRTLMLMALA
                     VACGGQPLSSLPAKTADSAGFIPAPHDPLPALERGQGRVLQAPRLVTVTFAGYELQAE
                     AEAFGSFLAGSQWLRTIGAEYGVGAGSSTAIRLSDKPPPTLDANSLNALLAARIADGT
                     LPPPDGNTLYVVYTSTLTWFLQQGGLICPGGSGHVQGVGATAQGTPFPWIVGADCFGD
                     LDDLVLDVSLAVADAVTDPFLDSYRLPVPAPASAPQQLGAGAACLGTAPAAEGSYKLA
                     RSYSSQAASAGKNPCLPVVAGEVFYSVSASPALVQEAAAGSTVTVDLTGWSDAAIDSW
                     VLIPSAAATDFDPQMALDRVTMTNGGHATATFTVPATAQPGQVGLMALFSAPFESQVV
                     LGVVVR"
     gene            1464..>2370
                     /locus_tag="VHN39_04460"
     CDS             1464..>2370
                     /locus_tag="VHN39_04460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815617.1"
                     /translation="MSARIALFAALAAIGCGSAHEPLPLLTTHGSSLVLQKPRLVSIT
                     YADYEYRQQVDAFGDFIVGSNWLETVVGEYGVQKGSHVAAHIDGPAPAVTSDFDEEKA
                     LQAWIESGQVPAPDAQTLYMIYVSSRTTASDHEGDRSCTSEGGYHSVAQLAAQTAFIY
                     AVVYDCSGLDDVTAAASHELIEAAIDPDLDSYYLTYDPKLPVSQENADLCENLPAIDE
                     GGFKVVRAWSNAAARAGTDPCVGAPTAPYAQGVPDQLDDATIDLFGGNVATKGTKVAV
                     GATGMIQVRVAGSGPGPFRVTAVDVA"
BASE COUNT          377 a          797 c          800 g          396 t
ORIGIN      
        1 ggtcaccttc tcggccattg actccagcgg gcagtatcag ctggcgttga gctggaaggt
       61 gcaaggcacg gcaccgctct ggacataccc gctcatcgtc ttcgagcaga ccgcgcgctt
      121 ccagggctct ctcagccaga aggacggcga gggttggaaa cagatcgcca ccttcgacac
      181 actgggcttc tgcgagtaca cgagcaagtg gatcggcggc ggcccggagt agactcaggc
      241 gatggcccag cgggtcacgg gacgacggcg atgtccgggt ggctgccggc ctggcgtgcg
      301 caatttttgg acattgaaaa tggcttgcct ttgaatcggc cggccggcat gaacgttgat
      361 cgaatcatga gtcatcggac cctgatgctg atggcgctgg ccgtggcttg cggcggccag
      421 cctctctcct cgcttccggc aaaaaccgcc gattcagcgg ggttcatccc tgcgccacac
      481 gacccgctgc cggcgctcga gcgcggccag ggaagggtgc tgcaggcgcc aaggttggtc
      541 acggtcacct tcgccggata cgaactccag gcggaggccg aggcctttgg cagcttcctg
      601 gcgggctcgc aatggctgcg caccatcggc gcggagtacg gcgtgggcgc cgggagcagc
      661 acggcaatcc gcctctccga caaaccgccg ccgacgctcg acgccaactc cttgaacgcc
      721 ctgctcgcgg cccggatcgc ggatggaacg ctgccgccgc cggatggaaa caccctctac
      781 gtcgtctaca cctcgacgct cacctggttc ctgcagcagg gcgggctgat ttgcccgggc
      841 ggatccggcc acgtgcaggg cgttggcgcc acggcgcaag gcacgccttt tccctggatc
      901 gtgggggcag actgtttcgg agatcttgac gatctcgtcc tcgacgtgtc gctggcggtg
      961 gccgatgctg tcacggatcc attcctggat tcgtatcggc tgccggtgcc ggcgcccgca
     1021 tcggcgccgc agcagctggg cgccggggcg gcatgcctgg gcaccgcacc ggccgccgaa
     1081 ggaagctaca agctggcgcg gagctattcg agccaggcgg cctcggcggg caagaacccg
     1141 tgccttccgg tggtcgcggg ggaggtgttc tacagcgtct cggcgagccc agcgctggtg
     1201 caggaagccg ccgccgggag caccgtgacg gtggacctga ccggctggtc cgacgcggcg
     1261 atcgactcct gggtgctgat tccctccgcc gccgcgaccg acttcgaccc gcagatggcg
     1321 ctcgaccggg tgacgatgac gaacggcgga cacgccacgg cgaccttcac ggtgccggcg
     1381 accgcccagc cgggacaggt cggcctcatg gctttgttct ctgcgccgtt cgagagccag
     1441 gtcgtgctcg gggtggtggt tcgatgagcg ccaggatcgc gctgtttgct gcgctcgccg
     1501 ccatcggctg cggatctgcg cacgagccgt tgccgctcct gaccacgcac ggcagcagcc
     1561 tcgtgctgca gaagccgcgg ctggtgagca tcacctatgc ggattacgaa tatcgacagc
     1621 aggtcgacgc gttcggagac ttcatcgtcg gctccaactg gctcgagacg gtggtcggcg
     1681 agtatggcgt tcaaaagggc tctcacgtgg cagcccacat cgacggtccc gcgcccgcgg
     1741 tcaccagcga cttcgatgaa gagaaggcgc tgcaggcctg gatcgagtcc ggccaggtgc
     1801 ccgcgccgga cgcccagacg ctctacatga tctacgtttc gtcgcggacc accgccagcg
     1861 atcacgaggg tgatcggtcc tgcacatcgg aaggcggcta tcactcggtc gcccagctgg
     1921 ccgcccagac cgccttcatc tacgcggtcg tctacgactg cagcggtctc gatgacgtca
     1981 ccgcggccgc gtctcacgag ctgatcgagg ctgcgatcga tcccgatctc gattcctact
     2041 acctgactta tgatccaaag ctcccggtgt cccaagagaa tgcggacctg tgcgagaacc
     2101 tccccgccat cgacgaggga gggttcaagg tggtgcgcgc ctggtcgaac gcggcggcgc
     2161 gcgccggcac cgatccgtgc gtcggcgcgc cgacggcgcc gtacgcgcag ggcgtccccg
     2221 atcaactcga cgacgccacg atcgatctgt tcggcggtaa cgtcgcgacc aaggggacca
     2281 aggtcgccgt cggcgcgacc ggcatgatcc aggtccgcgt cgccggctcc ggccctggcc
     2341 cgtttcgcgt gaccgcggtc gacgtcgcgc
//
LOCUS       DATAJL010000235         2989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42639,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000235 DATAJL010000000
VERSION     DATAJL010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42639"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..996)
                     /gene="mnmH"
                     /locus_tag="VHN39_04465"
     CDS             complement(<1..996)
                     /gene="mnmH"
                     /locus_tag="VHN39_04465"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043828 - tRNA 2-selenouridine synthase
                     activity [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEX2815618.1"
                     /translation="MSGIEILQTADTESLARFGAVIDVRSPGEFAEDHAPGAINLPVL
                     TDEERAEVGTIYVQESRFRARRIGAAYIARNIARHLETALAGEPGSFQPLIYCWRGGQ
                     RSHAMATILSQVGWRTTVLEGGYKTWRRHVTARLYDAPLPLRLVLLDGNTGSGKTEVL
                     QRLAALGQQVVDLEGLAAHRGSLLGGFADRPQPSQKMFESRLLGVLDGLDPARPVIVE
                     AESSKVGERMVPPALWQAMAEAPRIELSASPDARARYLVRAYRDIIEDRAALDEALRR
                     LPTPPGRKRLEAWGQLADAGEFEALALALMELHYDPAYRRSSRKDERRSLGAVDAR"
     gene            1044..2108
                     /gene="selD"
                     /locus_tag="VHN39_04470"
     CDS             1044..2108
                     /gene="selD"
                     /locus_tag="VHN39_04470"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0016260 - selenocysteine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEX2815619.1"
                     /translation="MTAIVADATPQAVRLTSLAHGGGCGCKLAPAVLQEILKGMPATA
                     AFSNLLVGTDTSDDAAVWRLNETQALVATTDFFMPVVDDPFDFGRIAATNALSDVYAM
                     GGTPILALAIVGMPIDKLAPETIRAILEGGASVCAEAGVPIAGGHSIDSVEPIYGLVA
                     LGLVHPDKVLTNRTAQAGDVLILTKALGVGVLSAAFKQERLGDAGYAALIASTTQLNA
                     VGRELGEAPGVHAVTDVTGFGLLGHTLELCRGSGLTAEIGADPPLLAGVEALARDGVR
                     TGASTRNWASYGADVRLPADLPDWRRDLLTDPQTSGGLLIAVAPEAAEAVLSLVRARG
                     FAFAAVVGGLSRGAPEIRVG"
     gene            2189..2560
                     /locus_tag="VHN39_04475"
     CDS             2189..2560
                     /locus_tag="VHN39_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HEX2815620.1"
                     /translation="MARISAAESQVMEAVWGKGPLAADEIVAEVGAPQGWGEATVKTL
                     INRLLKKKALVSERSEGRTRYRALVTRADYVQGESQGLLDRLFGGELAPLVAHYAKHR
                     NLSASEVARLKRLIEGLDNGE"
     gene            2550..>2989
                     /locus_tag="VHN39_04480"
     CDS             2550..>2989
                     /locus_tag="VHN39_04480"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HEX2815621.1"
                     /translation="MANDLLTAFIHLNLAAAVAILAVLAVRPLVCRHFGPAIAYRLWL
                     CVPIAAGAALFPAAAATRIVPPGDGPHFDPLFLASQGLTNAPTGLLFGVWVLGAALAA
                     TAIALCQLRFLDMARRGLAGPAVAGFFTPRIVMPADAAELYSAE"
BASE COUNT          412 a         1116 c         1014 g          447 t
ORIGIN      
        1 cctggcgtcg actgcgccga ggctgcgccg ttcgtccttg cggctcgacc ggcggtaggc
       61 ggggtcgtag tgcagctcca tcagcgccag cgccaacgct tcgaactcgc cggcgtcggc
      121 aagctggccc caggcctcca gccgcttgcg ccccggcggg gtgggcaggc gccgcagcgc
      181 ctcgtccagc gcggcgcggt cctcgatgat gtcgcgatag gcgcggacca gatagcgcgc
      241 gcgggcgtcg ggggacgccg acagctcgat ccgcggcgcc tcagccatcg cctgccagag
      301 cgccggcggc accatccgct cgccgacctt gctggactct gcctcgacga tgaccgggcg
      361 cgccggatcc agcccgtcga ggacccccag cagccggctc tcgaacatct tctggctggg
      421 ctgcggccgg tcggcgaagc cgcccagcag cgagccccgg tgcgccgcca gtccttcaag
      481 gtcgaccacc tgctggccga gcgccgccag cctctgcagc acctcggtct tgccggaccc
      541 cgtattgccg tcgagcagca ccagcctgag cggcagcggc gcatcgtaga gccgcgccgt
      601 cacatgcctg cgccaggtct tgtagccgcc ctccagcacc gtggtccgcc agccgacctg
      661 cgacaggatc gtggccatgg cgtgcgaccg ctgtccgcca cgccagcaat agatcagcgg
      721 ctggaacgat ccgggctcgc cggccagcgc ggtctccagg tgccgggcga tattgcgggc
      781 gatataggcc gcgccgatcc ggcgggctcg aaagcggctc tcctgcacat agatggtccc
      841 gacctcggcg cgctcttcgt cggtcagcac cggcaggttg atggcgcccg gcgcgtggtc
      901 ctcggcgaac tcgccagggc tgcgcacgtc gatcaccgcc ccgaagcggg cgaggctctc
      961 cgtgtcggcg gtctgcagga tctcgatgcc ggacagggga ttggccttcg ggttggacga
     1021 ggagccgcgt taggatcgag cctatgacag cgatcgtagc cgatgccacc ccccaggccg
     1081 tccgcctcac ctcgctcgcc cacggcggcg gctgcggctg caagctcgcg cctgcggtcc
     1141 tgcaggagat tctgaagggc atgccggcca ccgccgcctt ctccaacctg ctggtcggga
     1201 ccgacacctc cgacgacgcg gcggtctggc gcctcaacga gacccaggcc ctggtggcga
     1261 ccaccgactt cttcatgccg gtggtggacg accccttcga cttcggacgg atcgcggcca
     1321 ccaacgcgct ctccgacgtc tacgccatgg gcgggacccc gatcctggcg ctggccatcg
     1381 tcggcatgcc catcgacaag ctggcgcctg agaccatccg tgcgatcctg gaaggcggcg
     1441 cctcggtctg cgctgaggcg ggcgtgccga tcgccggcgg ccattccatc gatagcgtcg
     1501 agccgatcta cggcctggtg gcgctgggcc tcgtccaccc cgacaaggtg ctgaccaacc
     1561 gtaccgccca ggccggtgac gtcctgatcc tcaccaaggc gctgggcgtc ggggtcctga
     1621 gcgccgcctt caagcaggaa cgcctgggcg acgccggcta cgcggccctc attgcctcga
     1681 ccactcagct gaacgccgtt gggcgcgaac taggcgaggc gcctggggtg catgcggtca
     1741 ccgacgtcac cggcttcggc ctgctgggcc acactctgga gctctgccga ggctccggcc
     1801 tcaccgccga gatcggcgcc gatccacccc tgctggccgg cgtcgaggcc ctggcgcgcg
     1861 acggcgtcag gaccggcgcc tcgacccgca actgggcgag ctatggcgct gacgtgcgcc
     1921 tgcccgcgga cctgccggat tggcggcgcg acctcctgac cgatccccag accagcggcg
     1981 gcctgctgat cgcagtcgcg cccgaggccg ccgaggccgt gctcagcctg gtccgcgcgc
     2041 gggggttcgc cttcgccgcc gtggtcggag gcttgagcag gggagccccg gaaatccgcg
     2101 tgggctgaca gcccagccat cgcgaatgcg tgacttgacg gagacattta cgggcgtaag
     2161 ttcagcgtgc aattacggac gtaaagctat ggcgcgaatc tcggcggcgg aaagccaggt
     2221 gatggaggcg gtttggggca agggcccgct cgccgccgac gagatcgtgg ccgaggtcgg
     2281 cgcgccgcag ggctggggcg aagccaccgt caaaaccctg atcaaccggc tcctgaagaa
     2341 aaaagccctg gtctccgagc gcagcgaggg ccgcacccga taccgggcgc tggtcacccg
     2401 cgccgactat gtccagggcg agagccaggg cctgctggac cgcctgttcg gcggcgagct
     2461 cgccccgctg gtcgcccact acgccaagca ccgcaacctg tcagccagcg aggtggcgcg
     2521 cctgaagcgc ctgatcgaag gcctcgacaa tggcgaatga cctgctcacc gccttcatcc
     2581 atctgaacct cgccgccgct gtggcgatcc tcgccgtgct ggcggtccgc ccgctggtgt
     2641 gcaggcactt cggccccgcg atcgcctacc gcctgtggct gtgcgtcccc atcgccgccg
     2701 gcgcggccct gttccccgcc gctgcggcca cccgcatcgt gcccccgggc gacgggccgc
     2761 atttcgatcc gctgtttctg gcctcccaag gcctgaccaa cgcccccacc ggcctgctgt
     2821 tcggcgtctg ggtgctgggc gccgccctcg ccgccacggc catcgcgctc tgccagctcc
     2881 gcttcctgga catggcccgg cgcggcctgg cggggccggc ggtcgcgggc ttcttcacgc
     2941 cgcgcatcgt catgccggcc gatgccgccg agctctattc ggccgagga
//
LOCUS       DATAJL010000236         2417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_3904,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000236 DATAJL010000000
VERSION     DATAJL010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2417
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3904"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..904
                     /locus_tag="VHN39_04485"
     CDS             <1..904
                     /locus_tag="VHN39_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HEX2815622.1"
                     /translation="FGIAIATTSMLSLAGFIVALDAFGPVTDNAGGIAEMAGLPPEVR
                     VTTDALDAVGNTTKAVTKGYAIGSAGLGALVLFACYTQDLKFFAANAAPGSFFDNLGP
                     VAFDLSNPYVVVGLLFGGLLPFLFGGLSMTAVGRAAEAVVEEVRRQFRENPGIMTYDV
                     KPEYGRAVAILTQAAIKEMIVPSLLPVVSPILLFFVIKAIAGKVDAFASLGAMLMGVI
                     VTGLFVAISMTSGGGAWDNAKKLIEEGHYGGKGSEAHKAAVTGDTVGDPYKDTSGPAV
                     NPMIKITNIVALLLLAVLAHGVIH"
     gene            complement(1002..1463)
                     /gene="bamE"
                     /locus_tag="VHN39_04490"
     CDS             complement(1002..1463)
                     /gene="bamE"
                     /locus_tag="VHN39_04490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HEX2815623.1"
                     /translation="MIPAAAAGLSACAPITSYSGFQAIESDPKDVKIGTDTKSTVRTR
                     LGSPSATGTFDGNTWFYMNQLKSRVAFKQPEVIQRNVTAITFNKDSELVESVNSYTLK
                     DGKVVAFNGRETPTRGRELTILEQILGNVGRGGVLPNSNENVPGQRPGQQP"
     gene            1640..2170
                     /locus_tag="VHN39_04495"
     CDS             1640..2170
                     /locus_tag="VHN39_04495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome C chaperone family protein"
                     /protein_id="HEX2815624.1"
                     /translation="MLLDRLFRPRPALSAGRALYVRAVDQSRTPALYAELGAPDTVEG
                     RFEIYSLHVVLLLDRLRGEGEAAAEVSQALFDTYVKALDNALREMGVGDLSVGRKMRK
                     LGEAFYGRGKSYEAAFAALPDQAPLQALVTRTVYAEADAGLAPRMVSYVLAQRAALTD
                     QPAERLVAGEVDWAPA"
     gene            2167..>2417
                     /locus_tag="VHN39_04500"
     CDS             2167..>2417
                     /locus_tag="VHN39_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEX2815625.1"
                     /translation="MNQDWTSKVRLHELGRGTLSVRLEPDAAERAKIAKALGLAALPS
                     LSANLTLKGWMDGAEITGRFDAVVEQVCAVSLDNFEQPLS"
BASE COUNT          376 a          784 c          827 g          430 t
ORIGIN      
        1 gttcggcatc gccatcgcca ctacctcgat gctgtcgctg gccggcttca tcgtggcgct
       61 ggacgccttc ggcccggtga ccgacaacgc cggcggcatc gccgaaatgg ccggtctgcc
      121 tccggaagtc cgcgtcacca ccgacgccct cgatgccgtc ggcaacacca ccaaggctgt
      181 gaccaagggt tatgcgatcg gttccgccgg cctgggcgcc ctggtgctct tcgcctgcta
      241 cacccaggat ctgaagttct tcgcggccaa cgcggccccg ggcagcttct tcgacaacct
      301 gggcccagtg gccttcgacc tctccaaccc ctacgtcgtg gtgggccttt tgttcggcgg
      361 cctgctgccc ttcctgttcg gcggtctctc gatgaccgcc gtgggccgcg cggccgaagc
      421 cgtcgtcgag gaagtccgcc gtcagttccg cgaaaatccg gggatcatga cctatgacgt
      481 gaagcccgag tacggccgcg ccgtcgcgat cctgacccag gccgcgatca aggaaatgat
      541 cgtgccctcg ctcctgccgg tcgtgagccc gatcctgctg ttcttcgtga tcaaggcgat
      601 cgccggcaag gtcgacgcct tcgcctccct cggcgccatg ctgatggggg tgatcgtcac
      661 cggcctcttt gtcgccatct cgatgacttc gggcggcggc gcctgggaca acgccaagaa
      721 gctgatcgaa gagggccact acggcggcaa ggggtcggag gctcacaagg ctgccgtcac
      781 cggcgacacc gtcggcgacc cctacaagga cacctcgggt cccgccgtga acccgatgat
      841 caagatcacc aacatcgtgg ccctgctgct gctggcggtc ctggcccacg gcgtgatcca
      901 ctagcctcag ccacaggctg aatacaaaga cgccccggaa agcgatctcc ggggcgttct
      961 tgattccagc cctcccgatg aaggagaggg aaaagaggcc gctacggttg ctggccgggg
     1021 cgttggccgg ggacgttttc gttgctgttg ggtaggacgc cgccacggcc gacgttgccg
     1081 aggatctgtt cgaggatggt cagctcgcgt ccgcgggtcg gggtttcgcg gccgttgaag
     1141 gccacgacct tgccgtcctt cagggtgtag ctgttgacgc tctccaccag ctcggagtcc
     1201 ttgttgaagg tgatggcggt cacgttacgc tggatcacct cgggctgctt gaaggccacg
     1261 cgggacttca gctggttcat gtagaaccag gtattgccat cgaaggtgcc ggtggccgac
     1321 ggcgagccca ggcgggtgcg cacggtggac ttggtgtcgg tgccgatctt gacgtccttc
     1381 gggtcggact cgatggcctg gaaaccggaa tagctggtga tcggggcgca ggccgaaagg
     1441 ccggcggccg ccgccgggat caacagaacc gcggcgaggg cggcgaaggc agttcgtgag
     1501 gacgcagttc ttgaaggcat gggaacgcga aaacctgctc ttggcgcctg acggctttga
     1561 cctggggctt tgacctatcg tcgctcgccc cttagttcaa tgcggcttta tggaacggat
     1621 cgggcgaaat cgaggcgtca tgctgctgga ccgactgttt cgaccccgcc cggcgctcag
     1681 cgcggggcgc gcgctctatg tccgggccgt cgatcaatcg cgcacgccgg cgctctatgc
     1741 ggagcttggc gcgcccgaca ctgtcgaggg gcgattcgag atctacagcc tgcatgtggt
     1801 cctgctgctc gaccgcctgc gcggggaggg cgaggcggcg gcggaggtct cccaggcgct
     1861 tttcgacacc tatgtgaagg ccctggacaa cgccctgcgt gaaatggggg tgggcgacct
     1921 ttcggtcggc cgcaagatgc gcaagctggg cgaggctttt tacggccgcg gcaaatccta
     1981 cgaggccgcc ttcgcggcct taccggacca ggcgcccctg caggcgctgg tcacgcgcac
     2041 ggtctatgcc gaggcagatg ccggcctcgc gccgcggatg gtgagctacg tgctggccca
     2101 gcgcgcggcg ctcacggacc agccggcgga gcgccttgtg gccggcgagg tcgattgggc
     2161 gccggcatga accaggactg gaccagcaag gtgcgcctgc acgagctcgg ccgcgggacg
     2221 ctcagcgtcc gtctggagcc ggacgcggct gaacgggcga agatcgccaa ggcgctgggc
     2281 ctggcggcgc tgccctcgct cagcgccaac ctgaccctca agggctggat ggacggggcg
     2341 gagatcaccg ggcgcttcga cgccgtggtg gaacaggtct gcgccgtctc gctggacaat
     2401 ttcgagcagc cgctctc
//
LOCUS       DATAJL010000237         2615 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_55270,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000237 DATAJL010000000
VERSION     DATAJL010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55270"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VHN39_04505"
     CDS             complement(<1..285)
                     /locus_tag="VHN39_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815626.1"
                     /translation="MDTRWAHSLGLALGLAMALAPAAGRAAGVEWLQKPTVKDFVAAY
                     PPRAATEFMAGKASIGCKANPDGYLIDCKVISETPADYGFGDAAVTLSAKI"
     gene            630..1523
                     /locus_tag="VHN39_04510"
     CDS             630..1523
                     /locus_tag="VHN39_04510"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815627.1"
                     /translation="MGILIAGAVLFCAAPPAAAAPSVKYVAVDGARLAYVEAGHGEPL
                     VLVHGGMQDYRLWAPHMAALGKHFHVIAYSRRNHYPNDISLDGWADTAADLHAKDLAD
                     LIIALRLGPVNLVAHSSGAHAALFLVDQHPELVRRLVVNEPPASGLLARDPVLAEVGR
                     AFNGSLGASREAFRRGDLPDGVKLFTEAVSGPGAFEARTAEQKAMLMDNAVAHQVDAI
                     STRPRPIYTCEMAKRISVPVLISNGQRSPHFFHAVTDELARCVGHAERAAFPASHGVP
                     LEAPAEFDEAVLSFLAQPAVK"
     gene            2324..2542
                     /locus_tag="VHN39_04515"
     CDS             2324..2542
                     /locus_tag="VHN39_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815628.1"
                     /translation="MLKTTTVERELAALADIRLRWRGRPEVVELIDAAMTTLTSLARA
                     YGSDPIEGIDADALRLASLVTRALATVS"
BASE COUNT          449 a          853 c          864 g          449 t
ORIGIN      
        1 gatcttggcc gacagggtca ccgccgcgtc gccgaagcca tagtcggcgg gcgtctcact
       61 gatcaccttg cagtcgatga ggtagccgtc ggggttggcc ttgcagccga tcgaggcctt
      121 gccggccatg aactcggtgg cggcccgcgg cgggtaggcg gcgacgaagt ccttgaccgt
      181 gggcttctgc aaccactcca cgcccgcggc gcggccggct gccggggcga gcgccatcgc
      241 caggcccagg gcaaggccga ggctgtgcgc ccaacgcgtg tccatctgca aaccccgtcc
      301 tgttgacccg tccggcaagc tagcccgccg gcccgcccgg cgaaaggcgc tgcggctttg
      361 ccccgggacc cgcatcaccc ggcctgggcc gcgactcata gagtgatcgc acgacggcgg
      421 cgcaggcgtc ggaccagccg ccgcgcgtag ccggcaagcg gacattctgg atgaccgcta
      481 tgggtcgaaa gcggtccttg gcgcctcgcc tgaaagcgga ctcgctggac gtcggctgag
      541 ggggagccag actcttcgct tgaacctgct caagagatgg ctgtgagttg atgatgagcg
      601 gaattatcgg ctggaggcag gctgtgaaga tggggatcct gatcgcgggg gcagtattgt
      661 tttgcgccgc gccgccggcg gcggccgcgc cgtccgtgaa gtatgtcgcc gtcgatggag
      721 cgcgattggc ctacgtggag gcgggacatg gcgaaccgct ggttctggtc catggcggca
      781 tgcaggacta tcggctctgg gctccccaca tggccgcgct tgggaagcat ttccacgtga
      841 tcgcctacag ccgccgaaac cactacccga atgacatcag cctcgatggc tgggctgaca
      901 ccgccgcgga cctgcacgcc aaggacctgg ctgatttgat catcgccctg cgcctcggcc
      961 ccgtgaatct ggtcgcccat tcttccggcg cgcacgccgc cctcttcctt gtcgaccagc
     1021 atcccgaact cgtgcggagg ttggtggtga atgagccgcc ggcctccggc cttctcgccc
     1081 gggaccccgt gctggcggaa gtcggccgcg cgttcaacgg atcgctcggg gcgtcgcgag
     1141 aggctttccg gcgtggcgat ctaccggacg gcgtgaagct gttcacggaa gcggtgagcg
     1201 gcccaggcgc gttcgaggcg cgcaccgccg agcagaaggc catgctgatg gacaatgccg
     1261 tggcgcatca ggtggacgcc atctcgacgc gtccgcgccc gatctatacc tgcgagatgg
     1321 ccaagcgcat ttccgtgccg gtgctgatca gcaacggcca acgcagtccg catttcttcc
     1381 acgccgtcac cgacgaacta gcacgctgtg tgggacatgc agaacgcgcg gcgtttccgg
     1441 cgtcacatgg cgtcccgctg gaagctccgg cagagttcga cgaggccgtg ctgtcatttc
     1501 tcgcccagcc tgccgtgaaa tagagggccc atccgaatgt ccgctttgga tcgaaagcgg
     1561 tcagtacctc cgaacccgaa agcggacctt aggcagacca cgcgccgttt tgcaggacta
     1621 cccgatatcc gtccggatcc tcaaaggtcg caccctgccg atcccagtat gggttgaagg
     1681 ccgcaacagg ctcgaaaccc agtgtcgtca tgcgttccac cctcgcgcgc cactcggcgt
     1741 cttggggcag gtagaagact acgaggtggt cttggctcgg cgcgcgcccg tatgaatgtc
     1801 ccgcggcgcg cgtaaactcg aagtggtacg gcgcgccact cgttccaagc atcacaccgt
     1861 cgaagccatc gtggccctca aatcggtaga gcacggtcag tcccagtcca tcccgataga
     1921 acgggagaag ccgatcgatg tcgcccgtcg gccgcgccac acgcagggtt ggaacttgat
     1981 gcatgcgaga gactagctgc cggtccgacc cgtctcaacg tccgctttgg gtcgaaagcg
     2041 gacttgggct ccgcccggca aagcggactc tccgaacgtg accgctatag ctcccgaacc
     2101 ctgccgaatt gtcggtggtg accatgaaca cggcgcctgg gtcagcgccc aggcggcgat
     2161 tgtccatccg agctatcggc gcttgttcgt cggggaccac atcgatggcg gtcgcgccat
     2221 tcgccgcgat caacagggcg atgctcaact cgtgccctat cgaagacgat tcttcctcgc
     2281 gcgggtcttg ccttccccgc cgtgagcaga cccaattaac gttgtgctga aaaccaccac
     2341 cgtagagcgc gagctagctg ccctggccga catccggctg cggtggcggg gaaggcccga
     2401 ggtcgtcgaa ctgatcgacg ccgccatgac gacgctgact agcttggcga gagcgtatgg
     2461 ctcagacccg atcgagggga tcgacgccga tgcgctgcgg ctggcgtcgc tggtgacgag
     2521 ggcgttggcg acggtgtcgt aggcggaaca agtataaggg tgccgtcggc cgcgtggccg
     2581 gctcgaagac tcgacccggg agccaagtcc gcaag
//
LOCUS       DATAJL010000238         7226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_104865,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000238 DATAJL010000000
VERSION     DATAJL010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7226
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_104865"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            94..1089
                     /locus_tag="VHN39_04520"
     CDS             94..1089
                     /locus_tag="VHN39_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HEX2815629.1"
                     /translation="MRHEKAGRLLELARMLAATAEGLTLDEMAERLGVGRRTAERMRD
                     AVRDVFPQLEEVDDPPTRRFRIPAGLDGLYQAPTAEELAALAAAAEVFAQQGAATRSG
                     ALKSLEQKVLSATRAAARRKLAPDLEALLQAETIAVQAGPRPFEDEVVLATVREALLS
                     LRALRFRYEGGATPGRLREVTPFGVLFGRSNYLVADEGAGPRNWRLDRIQDIAVAERA
                     AARPQGFSLQAYADESFGIYQDDTADVVLRVTPAGAEDALRWRFHANQSVEPQADGSV
                     IVRFRASGMLELAWHLFTWGDRVAVLAPDVLRVTLVEQIDIARRAHASEPVVGDL"
     gene            1120..1287
                     /locus_tag="VHN39_04525"
     CDS             1120..1287
                     /locus_tag="VHN39_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815630.1"
                     /translation="MSVIADYANLYETQIRPRRSRRQRRGLRYLGVLLVWSALFVVRP
                     GLALSIWRERR"
     gene            1452..1895
                     /locus_tag="VHN39_04530"
     CDS             1452..1895
                     /locus_tag="VHN39_04530"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2815631.1"
                     /translation="MNAVRLAPQDHKGRSRGRVLLIDDDAALLGLMAHAFAAAGYTIL
                     TAENGRKGLNLVDSYKPDLVVTDIVMPEMEGIGAILQIRRKPKPPKIIAISGAGPGGR
                     RDYLSWAKHLGADEVLAKPFRMSQIVALSNRLIDNKINHLTGHGS"
     gene            1898..2605
                     /locus_tag="VHN39_04535"
     CDS             1898..2605
                     /locus_tag="VHN39_04535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017505852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2815632.1"
                     /translation="MHILLVEDNPVTSKSIELKLTAEGHNVFATDLGEDAIELAGLYD
                     YDVVLLDLDLTDMEGLDVLRAVRAKKIRTPVIILTASADVETKVKSLSAGADDFITKP
                     FHKAELAARINAVVRRSRGHSESIIRTGNIALNLDTRTTEVGGVPVHLTPSEYKVLEL
                     LSLRKNSVLTKEMCLNHLYNGLREPEVKIIDVFICKLRKKLAQAHDGGNQIETVWGGG
                     YMLRDTPDLPQALPLAA"
     gene            complement(2859..3629)
                     /locus_tag="VHN39_04540"
     CDS             complement(2859..3629)
                     /locus_tag="VHN39_04540"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815633.1"
                     /translation="MTPLPANTGEASQAHRLDALHRMSGEITHDLNNLLGVILSANER
                     LAEELGDGGEQQKLALLSLEAAERAAELLRRALTLTQAPAAPQPDAIDGAEALGTLER
                     LAGQAMGPGVRLRIFASALPLLCLGDRTGLEMALLNLCLNADQAMPGGGRIFVQARRM
                     LVSETESRRLGVTPGLFIAFTVRDTGPGMSAETLARATDPLFTTKATGTGLGLSSVLD
                     FVTSCGGAFALQSREGLGTAATLYLPAAASADQDAVAA"
     gene            complement(3749..4366)
                     /gene="fixJ"
                     /locus_tag="VHN39_04545"
     CDS             complement(3749..4366)
                     /gene="fixJ"
                     /locus_tag="VHN39_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0045893 - positive regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator FixJ"
                     /protein_id="HEX2815634.1"
                     /translation="MTSAADRTVFVVDDDAAALDSLVMLLRSDGLNPRGFSSAASFLE
                     TLTPESRGCVISDVRMPGMDGVQLLKTLKTMGCMLPVIVITGHADVTVAVQAMKAGAA
                     EFVQKPFESELILRMVRACLEDNDDAVDANSKRTRVVRRIESLTARERQVLDLIMEGA
                     SNKAVASNLAISPRTVEIYRANVMSKMRADSLSELIRMTLSSGAA"
     gene            complement(4326..5753)
                     /locus_tag="VHN39_04550"
     CDS             complement(4326..5753)
                     /locus_tag="VHN39_04550"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX2815635.1"
                     /translation="MAAHLLAGSLFSHSVYLFCLPALLVCAGLGGFPSGMSATVILAV
                     GAFVADIDGGLPVPERLGRVAIFLLLGAAVAYAGGRLRRSVGDWRQRLGQIEDRAAIL
                     HASLNAVPDASVVIDETGMIINFNHAAELLFGWASDDICGQNIEALMPLSYAEKHDDY
                     VQRYLQTGERRVIGSSRQVGGRRKDGAEFPMELRVGEVRMGKQRYFTGVVRDLSTIRE
                     AERRSDELHAQLTQIWSLNSMGEMASVLAHELNQPLSAVANYLRAARTLIANLEIGDD
                     DLIDAVSRAGDQAVRAGEIIRTMRDLATRGGTEQKPESLSAILAEIEFIIGLMVRDAG
                     ARVTYDLYQGSDIVLADRIQIQQLVVNLVRNAVDAVAKFPDREIKISTRQDADGKLLT
                     TVEDSGPGVDTTVMGRVFQPLASTKPTGMGLGLSICRAIVENHGGRIWVEPSSLGGAA
                     FSFVLTRVGASGDDVSGRPDRVRRR"
     gene            6242..>7226
                     /locus_tag="VHN39_04555"
     CDS             6242..>7226
                     /locus_tag="VHN39_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX2815636.1"
                     /translation="MGAAPTSDPYVYMEEAEGAKALDFARAENARSLPQLQNDPRYAG
                     FYADALKIATAKDRIPGVAIAGDGTLRDFWQDAEHVRGVWRTTSLASYRTATPAWKTI
                     LDVDALAKAEGKNWVFKGAQCLKPADRYCLVSLSNGGKDAVEAREFDTQTGKFVDGGF
                     RLPEAKANFSWIDKDTLAVATEWAPGDLTESSYPYILKILKRGQALGDAHEVFRGVKA
                     DVSVNPVVLREPDGAVAAVLAQRGLDFFNSEHQLITPAGPRKIGLPTKSTIQAYVGGQ
                     LVVTFEQDWPQKGFKQGDLVAFDLAAVKARPADLKGKLILRPSQSQAIDEVA"
BASE COUNT         1266 a         2382 c         2402 g         1176 t
ORIGIN      
        1 aagccatggt gaagtctcca gttgcggaat gtccgtggct cggttctgtt cctccggtgc
       61 gacagaagcg gacgtaggtg tcctgggggc gagatgcgac acgaaaaggc ggggcggctg
      121 ctggagttgg cgcggatgct ggccgcgacc gccgagggcc tgaccctcga cgaaatggcc
      181 gagcggctgg gggtcgggcg gcggaccgcc gaacggatgc gcgacgccgt gcgcgacgtc
      241 tttccgcagc tcgaggaggt ggacgatccg cccacccggc gcttccgcat tccagcgggg
      301 ctggatggcc tctaccaggc gccgaccgcc gaagagctgg cggcgctggc cgccgccgcc
      361 gaggtcttcg cccaacaggg cgcggccacg cgctcaggcg ccctgaaatc gctggaacag
      421 aaggtgctgt cggccacccg ggcggcggcc cggcgcaagc tcgcgccgga cctggaggcc
      481 ctgctccagg ccgaaaccat cgccgtgcag gccggtcccc ggccgttcga ggacgaggtg
      541 gtgctggcca cggtgcgcga ggccctgctc tcgctgcgcg cgctccggtt ccggtacgaa
      601 ggcggtgcga cgcccgggcg gctgcgggag gtgacgccgt tcggagtgct gtttgggcgg
      661 tcgaactatc tggtggccga cgagggcgcg ggcccccgca actggcggct ggaccgcatc
      721 caggacatcg cggtcgccga gcgagccgcc gcccgaccgc agggcttttc gctgcaagcc
      781 tatgccgacg agagcttcgg catctatcag gacgacaccg ccgacgtggt gctgcgggtg
      841 accccggcgg gggcggagga tgcgctccgc tggcgtttcc acgccaacca gagtgtcgag
      901 ccgcaggctg acggctcggt gatcgtccgc ttccgggcca gcggcatgct ggaactggcc
      961 tggcacctgt tcacctgggg cgacagggtc gcggtgctgg cgccggacgt cctgagggtg
     1021 accctggtgg agcagatcga catcgcgcgc cgcgcccatg cgtccgaacc tgtcgtaggg
     1081 gacctctagc cctcgcctga tcaccaccag gagagcgtca tgagtgtcat cgccgactac
     1141 gccaatctct atgaaaccca gatccgcccc cggcgcagtc gccggcaaag gaggggcctg
     1201 cgctacctgg gcgtgctcct ggtctggagc gcgctgttcg tggtgcggcc cgggctcgcc
     1261 ctatcgatct ggcgcgagag gcgttgaaaa cactttgaga atgggtctcc cagacccaac
     1321 gcccgcgccc gggcgaatct gccacctcta cccatacggg aatccacgta ggtaatcgtc
     1381 tcaggatgca gcctgcgaat cagcgtggtc tatggcgtta accataagtc aacacgccga
     1441 gttcgccgcc gatgaacgcc gtccgcctcg ctccgcaaga ccacaaaggc cgctctcgcg
     1501 gccgggtcct gctgatcgat gacgacgcgg ccctgctggg cctgatggcc cacgctttcg
     1561 cggccgccgg ctacaccatt ctcaccgccg agaacggccg caagggcctg aacctcgtgg
     1621 acagctacaa gcctgacctc gtcgtcaccg acatcgtcat gccggagatg gagggcatcg
     1681 gcgcgatcct gcagatccgc cgcaagccca agcccccgaa gatcatcgcc atctccggcg
     1741 cggggccggg cggacggcgc gactacctga gctgggccaa gcatctgggg gccgacgagg
     1801 tcctggcgaa gccctttcgg atgtcacaga tcgtggcgct ttcaaatcgt ttgatcgaca
     1861 ataaaatcaa tcatttaact gggcatggga gttgacgatg catatccttc tggtggaaga
     1921 caatccggtg acgtccaaga gcatcgagct gaagctcacg gccgaaggcc acaacgtctt
     1981 cgcgaccgac ctgggcgaag acgcgatcga gctggcgggc ctctacgact atgacgtggt
     2041 gcttctcgac ctcgacctca ccgacatgga gggcctggac gtgctccgcg ccgttcgcgc
     2101 caagaagatc cgcaccccgg tgatcatcct gaccgcctcg gccgatgtcg aaaccaaggt
     2161 gaagtcgctc tcggccggcg ccgacgactt cattaccaag cccttccaca aggccgagtt
     2221 ggccgcgcgg atcaatgcgg tggtgcggcg ctcgcgcggc cattcggaat cgatcatccg
     2281 cacggggaac atcgcgctca acctcgacac ccgcacgacg gaagtcggcg gcgttccggt
     2341 ccatctgacc cccagcgaat acaaggtgct ggagctgctc tcactcagga aaaactccgt
     2401 cctgaccaag gagatgtgcc tcaaccacct ctacaacggc ctgcgcgagc cggaggtgaa
     2461 gatcatcgac gtgttcatct gcaagctgcg caagaagctc gcccaggccc acgacggcgg
     2521 caaccagatc gagacggtct ggggcggcgg ctacatgctg cgcgacaccc ccgacctgcc
     2581 gcaggcgctg cccctggccg cctgatccga cgcaagagga ttgcgaaagg gaccggacgc
     2641 ctcgcggcgc ccggtccttt tgctgtgggc gccccatccc ggtgtcatcc cggaaagcgc
     2701 ccccgggctc ggccgaaggc cgacccgagg acaggctccg ttcctgtccg gaacccatag
     2761 acacgaagcg ctgggactag ccgctgatcg ccggcattca cggatctcgg tcttcgcgtt
     2821 ccgcgaagcc gggatcatgc tgtgaggcag gggcggcctt aggccgcgac ggcgtcttgg
     2881 tcggcgctgg cggcggccgg caggtacagc gtcgcagccg tgccgaggcc ttcgcgggac
     2941 tggagcgcga acgcgccgcc gcacgacgtc acgaagtcga ggactgagct caggccaagg
     3001 cccgtgccgg tcgccttggt ggtgaacagc gggtcggtgg cgcgcgccaa cgtctcggcc
     3061 gacatgccag ggccggtgtc gcgcacggtg aaggcgatga acaggccggg ggtcacgccc
     3121 aggcggcggc tttcggtttc gctgaccagc atgcggcgcg cctgaacgaa aatgcggccc
     3181 ccgcccggca tggcctggtc cgcgttcagg cagagattca acagcgccat ttccaaaccg
     3241 gtgcggtcgc cgaggcatag caggggcagg gcggaggcga agatcctcag ccggacaccg
     3301 gggcccatgg cctggcccgc cagtcgctcc agggtcccca gggcttcggc gccgtcgatg
     3361 gcgtccggtt ggggcgccgc gggcgcctgg gtgagggtca gcgcgcggcg gagcagttcg
     3421 gcggcgcgct cggcggcctc cagggacagg agcgcaagct tctgctgttc gccgccgtcg
     3481 cccagctctt cagccagccg ctcgttggcg ctcaggatga cgcccagaag gttgttgagg
     3541 tcgtgggtga tttcgcccga catccgatgc agcgcatcga ggcggtgagc ctgggaggcc
     3601 tcgccggtgt tggcgggaag gggcgtcaat ggccgcccgt tcgtgaaagc tacgctaccc
     3661 atttcaaacg cgaatcaaac acaaagcagc cccgttttca tccgggcgcg aatacctagg
     3721 tagcactacc taggcggctg gtcccagatc aggccgcgcc actcgacagc gtcatccgga
     3781 tcagttccga caggctgtcg gcgcgcattt tcgacatcac gttggcccgg taaatctcca
     3841 ccgtccgtgg gctgatcgcc aggttggagg ccaccgcctt gttgctcgcc ccttccatga
     3901 tcaggtcgag gacctggcgc tcgcgggccg tgagactctc gatgcggcgc accacccggg
     3961 tgcgtttgga gttggcgtcg accgcgtcgt cgttgtcttc aaggcacgcg cggaccatgc
     4021 gcaggatcaa ttcgctctcg aacggcttct gcacaaactc cgcggcgccg gccttcatgg
     4081 cctggaccgc gacggtgacg tcggcgtggc cggtgatgac gatcacgggc agcatgcagc
     4141 ccatggtctt cagcgtcttg agcagctgga ccccgtccat gccgggcatg cgcacgtcgc
     4201 tgatgacgca gccgcgagac tccggagtca gggtttccag aaaggaggcc gccgaagaaa
     4261 acccgcgtgg gttgagcccg tctgagcgca gcaacatgac aagcgaatcc agcgcggcgg
     4321 cgtcgtcatc gacgacgaac acggtccggt cggccgctga cgtcatcacc actcgcaccc
     4381 acccgtgtca gcacaaaact gaacgcggcg cctcccaacg agctgggttc gacccaaatg
     4441 cgcccgccgt gattttcgac tatagctcga caaatcgaaa ggcctagtcc cattccggtg
     4501 ggcttggtgc tggccagagg ttgaaagacc cgtcccataa cggtggtatc gaccccgggg
     4561 ccgctatcct cgactgtcgt caggagcttg ccgtctgcat cttgccttgt ggaaattttt
     4621 atttctcgat ccgggaactt ggcgactgca tcgacggcgt tgcgcaccaa gttaaccaca
     4681 agctgttgaa tctggatgcg gtcggcgagg actatatcgg acccttggta gaggtcgtag
     4741 gttacccttg ccccagcgtc acgcaccatc agtccgatga tgaattcgat ctccgccaag
     4801 atggcggaca ggctctccgg cttttgttcc gtgccgccgc gcgtcgccag atcgcgcatt
     4861 gtacggatga tttccccagc ccggaccgcc tggtctccgg cccgcgatac agcgtcgatc
     4921 aggtcgtcgt cgccgatctc cagattggcg atcagggtcc gggcggcgcg aaggtagttg
     4981 gccaccgcgg acaacggctg gttgagttca tgggcgagga ccgaggccat ttcccccatg
     5041 gagttcaggc tccagatctg ggtcaactgg gcgtgcagtt catcggatcg ccgctcggct
     5101 tcgcggatgg tggagaggtc ccgcacaacg ccggtgaagt agcgctgctt gcccatccga
     5161 acttcgccga cccgcagctc catggggaat tccgcgccgt ccttgcgtcg cccgccgacc
     5221 tggcgcgaac tgccgatcac ccggcgctcg ccggtctgaa ggtagcgctg gacatagtcg
     5281 tcatgctttt cggcgtacga tagaggcatc agggcctcga tgttctggcc gcagatgtcg
     5341 tcgctggccc agccgaacag cagttcggcc gcgtggttga agttgatgat catgcccgtc
     5401 tcgtcgatca ccacactggc gtcgggcacc gcgttgaggc tggcgtgcag gatcgccgcg
     5461 cgatcctcga tctggcccag ccgctggcgc caatctccca cggaacgccg cagccgcccg
     5521 cccgcatagg ccaccgccgc gcccagcagc aggaagatcg caacgcgtcc caaccgctca
     5581 gggacgggca ggcccccgtc gatgtcggcg acgaaggccc cgacggccag gatcacggtg
     5641 gcgctcatgc cggacggaaa accgcccagg ccggcgcaga ccagcagcgc cggcagacag
     5701 aacagataga ccgagtggct gaacagggat ccggcgagga ggtgcgccgc caaggtggtc
     5761 agcgcggcca gaagggcgag gaactggccc aggaagaagc tgcgaagcga attcgcgccg
     5821 agcatcgggc tcgggtcgaa ggcggaccac aatctattca tggacgcgcc ttcgcgctcg
     5881 cctgccgagc atcgcctatt ctgcgccact cagcgcgcgg atcaatcagg gcaaacacct
     5941 agttcggaga acatgggtcg cggccaaagg ctcttgagct tcgcggccgc atcgctctct
     6001 atcggggcta gtgtcccgat tccgaagttc gctagagctg gcggcaggag ccggacgaac
     6061 ttcggaatcg atgaggacgc tagcaagtgt atgtttctag tgtgcttttt tggatctgaa
     6121 gttcgctcgg cgcctggcct tgagtgcggc gaacttcaga tccagcacac taggtcgtcg
     6181 gggagtctca gagatcatga tcgtgcgcgc tatggcagcc cttttggcag gagccttcct
     6241 catgggcgca gcccccacca gcgaccccta cgtctacatg gaagaggcgg agggcgcgaa
     6301 agcgctggac ttcgccagag cggaaaacgc gcggtccctg ccgcaactgc aaaacgaccc
     6361 gcgctacgcg ggcttctatg ccgacgcgct gaagatcgcc acggccaagg accgcatccc
     6421 gggcgtggcc atcgccggcg acgggacgct gcgtgacttc tggcaggacg ccgagcacgt
     6481 gcgtggcgtc tggcgcacca ccagtctcgc gagctaccgg accgcgacgc ccgcctggaa
     6541 gacgatcctc gatgtcgatg cgctcgccaa ggccgagggc aagaactggg tcttcaaggg
     6601 cgcccagtgt ctgaagcccg ccgaccgcta ctgcctggtc tcgctctcaa acggcggcaa
     6661 ggacgccgtc gaagcgcgcg agttcgacac tcagaccggc aagttcgtgg acggcggctt
     6721 tcgcctgccg gaggccaagg ccaacttctc ctggatcgac aaggacacgc tcgccgtcgc
     6781 gaccgaatgg gcgccgggcg acctgacgga gtccagctac ccgtacatcc tgaagatcct
     6841 gaagcgcggc caggcgctcg gcgacgccca cgaggtgttc cgcggcgtga aggccgatgt
     6901 gtcggtgaac ccggtggtgc tgcgtgagcc ggacggcgcc gtcgccgccg tcctggcgca
     6961 gcgcggcctc gatttcttca acagcgagca ccagctcatc accccggccg ggcccaggaa
     7021 gatcggcctg ccgaccaagt cgacgatcca ggcctatgtg ggcggccagc tggtcgtgac
     7081 gttcgagcag gattggccgc agaagggctt caagcagggc gatctggtcg ccttcgacct
     7141 ggcggcggtg aaggccaggc ccgccgacct gaagggcaag ctgatcctgc ggcccagcca
     7201 aagtcaggcg atcgacgagg tcgcca
//
LOCUS       DATAJL010000239         2982 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91904,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000239 DATAJL010000000
VERSION     DATAJL010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2982)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2982)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2982
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91904"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            34..822
                     /locus_tag="VHN39_04560"
     CDS             34..822
                     /locus_tag="VHN39_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2815637.1"
                     /translation="MRVLVVANQKGGVGKTTTAINLGTALAAVGERVLLIDSDPQGNA
                     STGLGIGRAQRKNTLYDVLMGEKPMADAVVKSSVPGLDVIPSDPDLSGIEMELAQQSR
                     RSYKLRDALDAVREAGTYSYVLIDCPPSLNLLTVNAMAAADAVLVPLQCEFFALEGLS
                     QLMRTIELVRASLNPKLEIQGIVLTMFDRRNGLSGQVANDVRGHFGETVYQTVIPRNV
                     RVSEAPSFGKPALVYDLKCAGSQAYLRLAREVVLRERARRKVAA"
     gene            834..1703
                     /locus_tag="VHN39_04565"
     CDS             834..1703
                     /locus_tag="VHN39_04565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEX2815638.1"
                     /translation="MAEGRRGLGRGLSALLDEAGEGQGQAPAPGEGTRDLPIELVHRN
                     PDQPRRHFPAEEIAELEASIRDKGVLQPILVRPSPKTPGEFEIVAGERRWRAAQRAGL
                     KAIPALVRMLDDDKAFEIAIVENVQREDLNAMEEAQAYASLMRRMAYTQDKAATAVGK
                     SRSHVANTLRLLQLPESVQDHVLFGRLTAGHARAILSAAFPEALAQAIVDKGLSVRDA
                     EALAKAKGGPKKTSGPRRAPKDTDTAALETDLEDALGMSVDITDRGGAGELRIRYASL
                     EQLDELCRRLTRR"
     gene            1700..2221
                     /locus_tag="VHN39_04570"
     CDS             1700..2221
                     /locus_tag="VHN39_04570"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX2815639.1"
                     /translation="MILATGSRVRLRTIGVRDLKAATAHKYTLSITEPMTDPEWARQE
                     LDQTGFWGKDAGACAIESAVEGDGQRLVGTLQFYRSGPGIHGLEIGYILHNEDDRGKG
                     YASDALRLFSDLLFAEHPECHRLQLIIETWNDASARLAENCGYASEGILRKAGYSSPD
                     EPSDCFVYSRVRD"
     gene            complement(2218..>2982)
                     /locus_tag="VHN39_04575"
     CDS             complement(2218..>2982)
                     /locus_tag="VHN39_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815640.1"
                     /translation="GTNCNYNAAWTDPGSVVMRVNGQARSGFITSTPDGRVPMRKDVK
                     VSAFGGRTLKAGESPSDNPEGRALGERCLLSFGNSSGPVMLPGLYNNTYQFVQTKDQV
                     VIDVEMVHDARIVRMNATGHIPASVRPWMGDSIGHWEGDSLVVETTNFHPEQVFRGAS
                     EHLKVTERFTRTGKDRLHYAFWVEDPTVFAQPWGGEYEFSRITGQVYEYACHEGNYGL
                     VGILQGAREEDRTGHKTAPTNIDQKAKAAEDDGEGN"
BASE COUNT          478 a         1027 c         1004 g          473 t
ORIGIN      
        1 ggctcggccg tgcccgcaag gtctgaacct cgtttgcgtg tgctggtggt cgccaaccag
       61 aagggcgggg tgggcaaaac caccaccgcc atcaacctcg gcacggccct ggccgccgtg
      121 ggcgaacgcg tgctgctgat cgacagcgac ccccagggca acgcctccac aggccttggc
      181 atcggccgcg cgcagcggaa gaacaccctc tatgacgtgc tgatgggcga aaagccgatg
      241 gccgacgcgg tggtgaagtc ctccgtgccc ggcctcgatg tcataccgtc ggatccggac
      301 ctctccggca tcgagatgga attggcccag cagtcccggc gttcctacaa gctgcgcgat
      361 gcgctggacg ccgtgcgcga ggccgggacc tacagctacg tcctgatcga ctgcccgccg
      421 tcgctgaatt tgctgaccgt caacgccatg gccgccgccg atgcggtgct ggtgcccctg
      481 cagtgcgagt tcttcgcgct ggagggcctc tcccagctga tgcggaccat cgagctggtg
      541 cgcgcgagcc tcaatccgaa gctggagatc cagggaatcg tgctgacgat gttcgatcgc
      601 cggaacggcc tctcgggcca ggtggccaac gacgtgcggg gccacttcgg cgagacggtt
      661 taccagacgg tgattccccg gaacgtgcgg gtctccgagg cgccgtcgtt cggcaaaccg
      721 gcgctggtct atgatctgaa atgcgcgggg agccaagcct atctcaggct cgcccgtgag
      781 gtggttctgc gcgagcgcgc gcgccgtaaa gtggcggcgt aggagaggtt tcgatggccg
      841 agggccgcag aggattgggc cgggggcttt cggccctgct ggacgaggcc ggcgagggcc
      901 agggccaggc gccagcgccc ggcgagggca cgcgcgacct gcccatcgag ctcgtccacc
      961 gcaaccccga ccagccgcgc cgccacttcc cggccgaaga gatcgccgag ctggaggcct
     1021 cgatacgcga caagggtgtc ctgcagccga tcctggtgcg cccctcgccc aagacgcccg
     1081 gcgaattcga gatcgtcgcc ggcgagcggc gctggcgcgc ggcgcagcgg gccggactga
     1141 aggcgatccc ggcgctggtg cgcatgctgg acgacgacaa ggccttcgag atcgccatcg
     1201 tcgagaacgt ccagcgcgag gacctcaacg ccatggagga ggcccaggcc tacgcctccc
     1261 tgatgcgccg catggcctat acccaggaca aggccgccac cgcggtcggt aagtcccgca
     1321 gccacgtggc caacaccctg cgcctgctgc agctgcccga gagcgtgcag gaccatgtgc
     1381 tgttcggccg actgacggcg gggcacgcgc gcgcgatcct cagcgccgcc ttccccgagg
     1441 ccctggccca agctattgtc gacaaaggcc tttccgtccg cgacgcggaa gccttggcaa
     1501 aagccaaggg tggccccaag aagacctccg gcccccgccg cgcgcccaag gacaccgaca
     1561 ccgccgcgct cgagaccgac ctcgaggacg cgcttggcat gagcgtcgac atcaccgacc
     1621 ggggcggcgc cggcgagctc aggatcaggt atgccagcct tgaacagctc gacgagctct
     1681 gccgcaggct gacccgccgg tgattctggc caccggctcc cgtgtgcgcc tgcggaccat
     1741 cggcgtccgc gatctgaagg ccgccacggc gcacaaatac acgctctcga tcaccgagcc
     1801 gatgaccgac ccggaatggg cgcgccagga gctggatcag acggggttct ggggcaagga
     1861 cgccggcgcc tgcgccatcg agagcgccgt cgagggtgac ggccagcgcc tggtcggtac
     1921 cctgcagttc tacaggtccg gtccgggcat ccatggcctg gagatcggct acattctcca
     1981 caacgaggac gaccgcggaa agggctatgc ctctgacgcc cttcggcttt tctccgacct
     2041 gctgttcgcc gagcacccgg agtgccaccg cctgcagctg atcatcgaga cctggaacga
     2101 cgcctcggcg cgcctggccg agaactgcgg ctatgcctca gagggcatcc tgcgaaaagc
     2161 cggctattcc tcgcccgacg agcccagcga ctgcttcgtc tattcgcggg tgagggacta
     2221 gttcccctcg ccgtcgtcct ccgccgcctt ggccttctgg tcgatgttgg tgggcgcggt
     2281 cttgtggccg gtacggtcct cttcgcgggc gccctgcagg atgcccacca ggccgtaatt
     2341 gccctcgtgg caggcgtatt cgtagacctg cccggtgatg cgcgagaact cgtactcgcc
     2401 accccagggc tgggcgaaga cggtcggatc ctccacccag aaggcgtagt gcagccggtc
     2461 cttgccggtg cgcgtgaagc gctcggtgac cttcagatgc tcggacgccc cgcggaagac
     2521 ctgttcgggg tggaagttgg tggtctcgac caccaggctg tcgccctccc agtggccgat
     2581 cgagtcgccc atccagggcc ggaccgaggc cgggatgtgg ccggtggcgt tcatccgcac
     2641 gatgcgcgcg tcgtgcacca tctccacgtc gatgacgacc tgatccttgg tctgcacgaa
     2701 ctggtaggtg ttgttgtaga gccccggcag catcaccggg cccgacgaat tgccgaacga
     2761 caacaggcaa cgttcgccga gcgcacgccc ctcggggttg tcgctggggc tctcgccggc
     2821 cttgagtgtg cggccgccga acgcgctgac cttcacgtcc ttgcgcatcg gcacacggcc
     2881 gtcgggcgtg gaggtgatga agccgctccg ggcctgtccg ttcacccgca tgaccacgct
     2941 gcccgggtcg gtccaggcgg cgttgtagtt gcagttggtg cc
//
LOCUS       DATAJL010000240         3883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_16811,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000240 DATAJL010000000
VERSION     DATAJL010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3883
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16811"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..143)
                     /locus_tag="VHN39_04580"
     CDS             complement(<1..143)
                     /locus_tag="VHN39_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815641.1"
                     /translation="MIDKRPFAGLGGADHGWLKAKHHFSFANYYDPKRMGWGALRVWN
                     DDE"
     gene            279..1100
                     /locus_tag="VHN39_04585"
     CDS             279..1100
                     /locus_tag="VHN39_04585"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0016018 - cyclosporin A binding [Evidence
                     IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX2815642.1"
                     /translation="MSMRATGLAVAVAAVLTIGAARPAPDWLALDPTQTLVIETSKGR
                     IVVEMAPALAPLAVARVKRLAHEGVYDGLLFHRVIEGFVDQTGNPNNHDGGTSAYPDL
                     PAEFSVRLPAETPLSVVVSRGDGIEGFVGSIPVAGVSEREQGLGRDHRPRVWGAYCDG
                     VAGMGRQAGIDTANSEIFFMRAPARRLDHDYAVWGRVVQGLDVVRAIKTGEPPPDPDR
                     MIRVRLAADLPPAERPKLEVANPRGPVFRARAAALKARLGARFSVCDLQNVVRQP"
     gene            1195..1371
                     /locus_tag="VHN39_04590"
     CDS             1195..1371
                     /locus_tag="VHN39_04590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815643.1"
                     /translation="MKFEVIEGSGEWIVRRDGVELARFGEQLAALADIAERFRDTDEA
                     PSSYSLAMRYQARA"
     gene            1573..1776
                     /locus_tag="VHN39_04595"
     CDS             1573..1776
                     /locus_tag="VHN39_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815644.1"
                     /translation="MPYFCYIHRETGGVPHFEVLPETSQSGAVDRAAELLAQRADGVR
                     AEVWEDERLIFTVPRATPRPFAS"
     gene            complement(1810..2094)
                     /locus_tag="VHN39_04600"
     CDS             complement(1810..2094)
                     /locus_tag="VHN39_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815645.1"
                     /translation="MARLRKQLPAHLGAGELRFRGFSGPVDYEILGEPSTLRLGPLRL
                     RGSLTATPEVAAEAFHAGEAELKLEDGGTFRITLLGHSAGSQTAYFEMRV"
     gene            complement(2165..3091)
                     /locus_tag="VHN39_04605"
     CDS             complement(2165..3091)
                     /locus_tag="VHN39_04605"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX2815646.1"
                     /translation="MHWRSIDLNLLVVFDAVMRERSVTRAGRVIGLSQPAMSHALNRL
                     RHMLGDELFVRTPDGMAPTPRAEQLAEPVRNALSEVQLALEPLAFNPQASDRNFTLGL
                     NNFAAVVIAPPLVAATCGDAPGVRLDMRPSGALDIPACLDRGDIDLAIGGLESPGERF
                     ASELLLEDPFVLVMRRGHPASGRELSAEMLAGLPYLHISSSGEDTAFLDRWLAARGFA
                     RRVIVSSPYLSARTILAESDLVAVFSRRVAQAFARNHPLALYEPAFDSPLVRTTMLWH
                     RRQDGHPAHRWLRDHVTAVSKGLVGVARLAAR"
     gene            3196..3576
                     /locus_tag="VHN39_04610"
     CDS             3196..3576
                     /locus_tag="VHN39_04610"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2815647.1"
                     /translation="MATILVVEDEAEVRDAIAQILRAGDHTVIEAADGRDGLDQFYLR
                     QPNLIICDILMPERDGLELIGALRDAGIEVPIIAMLEQDAGQAAVLQDLAIGLGANAL
                     LAKPLLATELLETLAPLLSSVAPP"
     gene            complement(3583..3765)
                     /locus_tag="VHN39_04615"
     CDS             complement(3583..3765)
                     /locus_tag="VHN39_04615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3606 domain-containing protein"
                     /protein_id="HEX2815648.1"
                     /translation="MAGLKDKRGFIDKERLDLSERKAVEYWMKRWGVTKDQITAAHRK
                     VGRLTKDIAAELGKKR"
BASE COUNT          621 a         1248 c         1406 g          608 t
ORIGIN      
        1 atttcgtcat cgttccacac tcgaagcgcg ccccaaccca tgcgcttagg gtcgtagtag
       61 ttggcgaacg agaaatggtg cttggccttc agccagccgt ggtcggcgcc gccgaggccc
      121 gcgaaggggc gtttgtcgat catggtgtcc tttcctggcg ccgcatcctc gggacttaag
      181 ggggacttga ggaggcgccg tttcgaggct caagataagc ttccggttcg tgggggaaag
      241 accgtgatcg gcacaagatt gtttccggat tggagaggat gagcatgcgc gcaacggggc
      301 tggcagtcgc ggtcgccgcg gtcctgacga tcggagcggc caggcccgcg ccggactggc
      361 tcgcgctgga tcccactcag acgctcgtca tcgagacctc caagggccgg atcgtggtgg
      421 agatggcgcc ggcgctggcc ccgctggccg tggcgcgggt caagcggctg gcgcacgagg
      481 gcgtctatga cggcctgctc ttccaccggg tgatcgaggg cttcgtcgac cagaccggca
      541 atcccaacaa ccatgacggc gggacctcgg cctatccgga cctgccggcg gagttcagcg
      601 tgcggctgcc ggccgagacg cctctgagcg tggtggtgag ccgcggcgac gggatcgagg
      661 ggttcgtggg ctccataccg gtggcggggg tctcggagag ggagcagggc ctgggacgcg
      721 accatcgtcc gcgggtctgg ggcgcctatt gcgacggcgt ggccggcatg ggccgtcagg
      781 cggggatcga caccgccaac agcgagatct tcttcatgcg ggcgccggcg cgacggctcg
      841 accacgacta cgccgtctgg ggccgcgtgg tgcaggggct ggacgtggtc cgggcgatca
      901 agacaggcga accgccgccc gatccggacc ggatgatccg cgtgcgcctg gccgccgacc
      961 tgccgccagc cgagcggccg aagctcgagg tcgccaaccc gcgcggaccg gtattccggg
     1021 cccgggcggc ggcgctcaag gcccggctgg gcgcccggtt cagcgtctgc gatctgcaga
     1081 acgttgttcg acaaccctga cgtgcggcaa ctgggcgcag ggcggaacgg gcgcacgctg
     1141 ttggtgtatt aatcacccac gccatatcgc tgtagttgca gcggacggga ccccatgaaa
     1201 ttcgaagtga tcgagggcag cggcgagtgg atcgtccgcc gcgacggcgt cgagcttgcg
     1261 cggttcggcg aacagctggc ggcgctggcg gacatcgcgg agcgctttcg cgataccgac
     1321 gaggcgccga gcagctactc gctcgccatg cgctaccagg cgcgcgcctg agcccaggac
     1381 gccgagcttc gacgacctga cacggcgaac tcaatatctg tccgacgccg gacataggac
     1441 gcgtttttac tcgcgaattc ctgagattct ctttggcggc gcccggtaat gggtgcaacc
     1501 tttgccttgg ccgccagtgt cacctggctc cgggcggctg ggcgacgaca gcccgagccg
     1561 cgagagctgg cgatgcccta cttctgctac atccatcgcg aaaccggcgg cgtgccccac
     1621 ttcgaggtgt tgccggaaac gtcgcagagc ggcgccgtcg accgggccgc ggagctcctg
     1681 gcgcagcggg ccgacggagt tcgcgccgag gtctgggaag acgagcgcct gatcttcacc
     1741 gttccgcggg cgacgccgcg gccgttcgca agctgagcgc acatcgtacg agccagggtt
     1801 gtggtcgcgt cacacgcgca tttcgaaata ggcggtctgc gagccggccg agtggcccag
     1861 cagggtgatg cggaaggtcc cgccgtcctc cagcttcaac tcggcctcgc cggcgtggaa
     1921 cgcctcggcg gcgacctccg gcgtggcggt cagcgagccg cgtagcctga gcggccccag
     1981 ccgaagcgtc gagggctcgc ccagaatctc gtagtcgaca ggacccgaga acccgcggaa
     2041 gcggagctcg ccggcgccca gatgggccgg aagctgttta cgcaggcgcg ccatcgggtc
     2101 tccttcttga gtgaagttag ataacgccca aggccaaggt tcgatccctg gttgccgccg
     2161 gcggtcaacg cgcggcgagc cgggcgacgc cgaccagccc cttcgaaacc gcggtcacgt
     2221 ggtcccggag ccagcggtgc gccgggtgac cgtcctgccg ccggtgccag agcatggtgg
     2281 tgcgcaccag cggcgaatcg aaggccggct cgtaaagcgc caggggatgg ttgcgtgcga
     2341 acgcctgggc gacccggcgg ctgaagacag ccaccaggtc ggactcggcc aggatggtgc
     2401 gcgcggagag gtagggcgag ctcacgatga cgcggcgcgc gaaaccccgg gcggccagcc
     2461 agcggtcgag gaaggcggtg tcctcgccgc tggatgagat atgcagatag ggcaggccag
     2521 ccagcatctc cgccgacagc tcgcgcccgc tggccgggtg gccgcggcgc atgaccagga
     2581 cgaacggatc ttccagcagc aactcgctgg cgaaccgttc gccggggctc tccagaccgc
     2641 cgatcgccag atcgatgtcg ccgcggtcca ggcaggcggg gatgtcgaga gcgccgctgg
     2701 ggcgcatgtc gaggcgcacg cccggcgcat cgccgcatgt ggccgcgacc aggggcgggg
     2761 cgatgaccac ggcggcgaag ttgttcaggc cgagggtgaa gttgcggtct gaggcctgcg
     2821 gattgaacgc caggggttcg agggcgagct ggacttcgct gagcgcgttg cgcaccggct
     2881 cggcgagttg ctcggcgcga ggcgtcggcg ccatgccgtc cggcgtccgc acgaacagct
     2941 cgtcgcccag catgtggcgc aggcggttga gggcgtggct catggccggc tggctcaagc
     3001 cgatgacgcg gcctgcgcgg gtgacgctgc gctcgcgcat gaccgcgtcg aagaccacaa
     3061 gcaggttgag gtcgatcgaa cgccaatgca tgggcaacat atacctgtgc gcacaatgca
     3121 tttctataat gcggcaatcg aatccatacg caccgcgaac ggtgggggcg cccagccgca
     3181 cgaggcgcga gacagttggc gacgatactg gttgtcgagg acgaagcgga ggtgcgcgat
     3241 gcgatcgcgc agatcctgcg ggccggggac catacggtga tcgaggccgc ggacggccgg
     3301 gacgggctgg atcaattcta cctgcgccag ccgaacttga ttatctgcga catcctgatg
     3361 ccggagcgcg acggactcga gctgatcggg gccttgcgcg acgccgggat cgaagtcccg
     3421 atcatcgcga tgctggaaca ggacgcgggc caggccgccg tgttgcagga cctcgctatc
     3481 gggctggggg ccaacgccct gctcgcgaag ccgctcctgg ccaccgaact cctggaaacc
     3541 ctggcgcccc tgctttcctc ggtggcgcca ccctagcggc gcctagcgct tcttgcccaa
     3601 ttccgcggcg atgtccttgg tcaggcggcc gaccttgcgg tgggcggcgg tgatctggtc
     3661 cttggtcacg ccccagcgct tcatccagta ttcgacggcc ttgcgttccg agaggtcgag
     3721 ccgttccttg tcgatgaagc cgcgcttgtc cttcaggccg gccatggggt gatcctccgc
     3781 gattcaacgc gaccctagcc catccctccc cttcatgggg agggtcgagc cggcgcagcc
     3841 ggccgggatg ggggagtcgc gtacaagttc cgatgctcgt gct
//
LOCUS       DATAJL010000241         2203 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29638,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000241 DATAJL010000000
VERSION     DATAJL010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29638"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..490
                     /locus_tag="VHN39_04620"
     CDS             <1..490
                     /locus_tag="VHN39_04620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX2815649.1"
                     /translation="PMSGEACPMAERQAVDMGTKRFIDVVSSLDAYLDLDALTVFARW
                     ITPPLTPKRFDTWFYAVSAPAEQLAACDGRETVDAEWIAPAEALRLAAAGERKVIFPT
                     RMNLQLLAEANGAEDAVARAAARTLVTVQPQIQSRPSGRVLVLPSDAGYGVVEEPLEN
                     VM"
     gene            584..1159
                     /locus_tag="VHN39_04625"
     CDS             584..1159
                     /locus_tag="VHN39_04625"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HEX2815650.1"
                     /translation="MRLAILLTAAVLVAAPAVAAAETVVPVDKFNALELHGGGTVTIR
                     QGPIQRVTVIEDTSGSSRVEVVDHGSGGKLILSSCRGACWGRTHFEVEVQTPVMSSVS
                     IMGGGHIVAEGAFASQGAVSAAIHGGGSIDLKAMPAQSASAAIHGGGKIVVAAQNSLA
                     AEISGGGSIRYLGQPSVSTSIHGGGSVDRAY"
     gene            complement(1397..1882)
                     /locus_tag="VHN39_04630"
     CDS             complement(1397..1882)
                     /locus_tag="VHN39_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516651.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEX2815651.1"
                     /translation="MSQQNSGQLFQPPNALRLKVGGGRLGAIDPAAIAKAEAALKSLA
                     GNFAQWLADEITKLEAARQQAHVQGVTAESMENLYLRAHDLKGLGTTYGYQLITRIAG
                     SLCRMIDDRDKRAATPMELVDAHIDAIKAAVRDDIKSDEHPVGRVLVEELERRVKAMG
                     A"
     gene            complement(2010..>2203)
                     /locus_tag="VHN39_04635"
     CDS             complement(2010..>2203)
                     /locus_tag="VHN39_04635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEX2815652.1"
                     /translation="HTAKVTFEILEAPKRPVSAVADNIEVRNVLEVHIAEDREVELNM
                     LFDEGRSLEERVLAEQFSA"
BASE COUNT          330 a          721 c          774 g          378 t
ORIGIN      
        1 gccgatgagc ggcgaggcct gccccatggc ggagcggcag gcggtggaca tggggacgaa
       61 gcggttcatc gacgtggtgt ccagcctcga cgcctatctc gacctcgatg ccctgacggt
      121 gttcgcgcgc tggatcaccc cgcccttgac gcccaagcgc ttcgacacct ggttctacgc
      181 ggtgagcgcc ccggccgagc agctcgccgc ctgcgacggg cgcgagacgg tggacgccga
      241 gtggatcgcg ccggccgagg ccctgcgcct ggccgcggcc ggcgagcgca aggtgatttt
      301 ccctacgcgc atgaacctgc agctcctggc cgaggcgaac ggagctgagg acgccgtggc
      361 gcgcgccgcg gcccgaaccc tggtcaccgt ccagccgcag atccagtcgc ggccgtcggg
      421 gcgggtgctg gtcctgccca gcgacgccgg ctacggcgtc gtcgaggagc ctctggaaaa
      481 cgtgatgtga ccggggcggt cccggccggc cgcatgacca aagcttaagt tgcgcttgtt
      541 ggaggccgct ggtcacttgg tcccgaaccc aaggaacctg cccatgcgcc tcgctatcct
      601 gctcaccgcc gccgtgctgg tcgcagcccc ggccgtcgcc gcggccgaga ccgtcgtgcc
      661 ggtcgacaaa ttcaacgccc tcgagctgca tggcggcgga accgtgacga tccgccaggg
      721 tccgatccag cgcgtgacgg tgatcgagga caccagcggg tcttcgcgtg ttgaggtcgt
      781 cgatcacgga agcgggggga agctgatcct gagctcctgc cgtggcgcct gttgggggcg
      841 cacccacttc gaggtcgaag tccagacgcc ggtgatgagc tcagtgtcca tcatgggcgg
      901 cggccacatc gtggccgagg gcgcgttcgc gtcgcagggt gcggtctccg ccgctatcca
      961 cggtggcggc agcatcgatc tgaaggccat gccggcgcag tcggcgtccg ccgcgatcca
     1021 cggcgggggc aagatcgtgg tagcggctca gaacagcctg gccgcggaga tcagcggcgg
     1081 cgggtcgatc cgctatcttg gccagccgtc ggtgagcacc tcgatccacg gcggcggatc
     1141 ggtcgatcgc gcgtactagt gtgctggatt tgaagttcgc cgcagtcatg gccaagcgcc
     1201 cagcgaactt caaatccaaa gaggcacacc aggaaaacgt agacttgcta gtgtccttgt
     1261 cggttccgaa gttcatccgg cgccggccgc aagcgcttgc gaacttcgga atcgggacac
     1321 taggggcggc agacagcaaa ccgccgcccg gcgcagggcg cgaggcggcg gctcagggtc
     1381 ttcgaattgg gggtgtctag gcgcccatcg ccttgacgcg gcgctcgagc tcttcgacca
     1441 gcacgcggcc gaccgggtgc tcgtcggact tgatgtcgtc gcgcacggcg gccttgatcg
     1501 catcgatatg ggcgtcgacc agttccatcg gcgtcgcggc ccgcttgtcc ctgtcgtcga
     1561 tcatccggca gagcgagccg gcgatgcggg tgatcagctg atagccgtag gtggtgccga
     1621 ggcccttcag gtcgtgggcg cggaggtaga ggttctccat gctctcggcg gtgacgccct
     1681 ggacatgggc ctgctggcgg gcggcctcga gcttggtgat ctcgtcggcg agccattggg
     1741 cgaagttgcc ggcgaggctc ttcagcgccg cttcggcctt ggcgatggcc gcggggtcga
     1801 tcgcacccag ccgaccgccg ccgaccttca gacgcagcgc gttgggcggc tggaacagtt
     1861 gaccggaatt ctgctggctc aagggacgcc ctccaggtgt taccgtccta ggctagggcc
     1921 aacctgttaa taaccggtga gaagcaaccc tcggttttgc ttggttttcc gcgaccctgc
     1981 gccgcagcgc cgcctcagct ggggccccgt caggcggaga attgctcggc caggacccgt
     2041 tcttccaggc tgcgcccttc gtcgaacagc atgttcagct cgacctcgcg gtcctcggcg
     2101 atgtggacct ccaggacatt gcgcacctcg atgttgtcgg ccaccgcgct gaccggccgc
     2161 ttgggggctt caaggatctc gaaggtcacc ttggcggtgt ggg
//
LOCUS       DATAJL010000242         2070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_91916,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000242 DATAJL010000000
VERSION     DATAJL010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91916"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..851)
                     /locus_tag="VHN39_04640"
     CDS             complement(<1..851)
                     /locus_tag="VHN39_04640"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2815653.1"
                     /translation="MSDAIARPEVQALRTSQIREVANVGMARKDILKFWVGESDQPTP
                     AFIREATAKALMAGETYYTHNLGREDLREALSAYLSRLHGQPMAFDRLGITSAGVNAL
                     MLVSQAVVSPGDKVVVTVPAWPNIVEIPRILSARLETVALERAQGLWRLDLDKLMAAL
                     TPDTRALFLNSPNNPTGWTLPAEDRAAILERCRKYGIWLITDDPYERLIFGPGKSAPS
                     FLPLAGDDERVISTNTFSKAWRMTGWRMGWMVLPKSLVESMGVVIEYNTSCAPDFIQS
                     GAIAALN"
     gene            complement(897..1529)
                     /locus_tag="VHN39_04645"
     CDS             complement(897..1529)
                     /locus_tag="VHN39_04645"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2815654.1"
                     /translation="MMLIGQYDSPFVRRVGIALRTYGLDFEHQPWSTFGDADKIAKHN
                     PLRRVPTLVMDDRTAYVESAAILTVIDDKVGPERASLARHGEDGLALLRIAGFAAGAA
                     DKGVSLLYERVLREAAFPLWVDRCRLQIGETLDLLEAERQLRPTRYLFDDAPSHADVM
                     LTTMWSFVSEALEGEFEWSRWPALDAHAKDCEALPIFSEVRQRFQGPGES"
     gene            1713..>2070
                     /locus_tag="VHN39_04650"
     CDS             1713..>2070
                     /locus_tag="VHN39_04650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815655.1"
                     /translation="MTSSPAATVPRPQPKRSPLAFFLLTFVLTIPFLVLGAATGLSLL
                     PGLPIAALAAICPGLAALILCAREGGGGAAALLKRSFDFRRIPALAWYAPILLIAPGV
                     AALSWGVMRLTGTPVPA"
BASE COUNT          299 a          767 c          671 g          333 t
ORIGIN      
        1 tcgttcagcg ccgcgatggc gcccgactgg atgaagtccg gcgcgcagga ggtgttgtac
       61 tcgatcacca cccccatgga ctccaccagg gacttgggca gcaccatcca gcccatccgc
      121 cagccggtca tccgccaggc cttggagaaa gtgttggtgg agatcacccg ctcgtcatcg
      181 cccgccagcg gcaggaacga gggcgcggac ttccccggcc cgaagatcag ccgctcatag
      241 ggatcgtcag tgatcagcca gatgccgtat ttgcggcacc gctccaggat cgccgcgcgg
      301 tcctccgccg gcagggtcca gccggtggga ttgttgggcg agttgaggaa cagcgccctg
      361 gtgtccggcg tcagggccgc catcagcttg tcgaggtcga gccgccagag cccctgcgcg
      421 cgctccaggg ccacggtctc cagcctggcc gacaggatgc gcgggatctc cacgatgttg
      481 ggccaggccg gaaccgtcac caccaccttg tcgcccggcg agaccaccgc ctggctgacc
      541 agcatcaggg cgttgactcc ggcgctggtg atccccagcc gatcgaaggc catcggctgg
      601 ccatgcaggc gcgacaggta ggccgagagc gcctcgcgca ggtcctcgcg tcccaggttg
      661 tgggtgtaat aggtctcgcc cgccatcagc gccttggccg tggcctcgcg gatgaaagcc
      721 ggcgtcggct ggtcgctctc gcccacccag aacttcaata tgtccttgcg cgccatgccc
      781 acattggcga cctcgcggat ctgcgaggtg cgtagggcct ggacttccgg gcgggcgatg
      841 gcgtcggaca tggcccctcc tagcgggcgc cggcccgcgg aacaatcgcc gcgcgttcag
      901 ctctcgcccg gcccctggaa gcgctggcgg acttcgctga agatcggcag cgcctcgcag
      961 tccttcgcgt gggcgtccag ggcgggccac cggctccact cgaactcgcc ctccagggct
     1021 tcggagacaa agctccacat ggtggtcagc atgacgtcgg catggctcgg cgcgtcgtca
     1081 aacagatagc gcgtgggccg cagttgccgc tcggcttcca gcaggtccag ggtctccccg
     1141 atctgcaggc ggcagcggtc gacccacagc gggaaggccg cctcgcgcag cacgcgctcg
     1201 tagagcaggc tcaccccctt gtctgcggcg cccgccgcga accccgcgat ccgcaggagc
     1261 gcgagcccgt cctcgccgtg gcgcgccagc gaggcgcgct cgggccccac cttgtcgtcg
     1321 atcaccgtca ggatcgccgc ggactccacg taggcggtgc ggtcatccat caccagcgtc
     1381 gggacgcggc ggagcgggtt gtgcttggcg atcttgtcgg cgtcgccaaa cgtcgaccag
     1441 ggctggtgct cgaagtcgag cccataggtc ctgagcgcga tccccacccg ccgcacgaac
     1501 ggcgaatcgt actgtccgat cagcatcatg ccgcgccctc ccgcaccgcc accttcaccg
     1561 ccttctataa ccacccgctc accgcccgaa cccaggagtt ctggggcggc gatcaatgcg
     1621 tctggacatc ggccagttcc gttgcgccag atcacagtgc gcgacgccag accttctagg
     1681 ctccggaacc atccgcgcca ggcgaacccc agatgacaag ctccccggcc gccaccgtcc
     1741 cgcgcccgca gcccaagcgg tcgcctctgg cgttcttcct gctgaccttc gtcctgacca
     1801 tccccttcct ggtgctgggg gcggcgaccg gcctttcgct cttgcccggc ctgccgatcg
     1861 cggcgctggc ggcgatctgc ccgggcctgg ccgccctgat cctttgcgcc cgggagggcg
     1921 gcggcggcgc ggccgccctg ctcaaacggt ccttcgattt ccgacgcatc ccggcgctcg
     1981 cctggtacgc gcccatcctc ttgatcgcgc ctggcgtcgc ggcgctgtcc tggggcgtga
     2041 tgcgcctgac gggaacgccg gttcccgcac
//
LOCUS       DATAJL010000243         2868 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42751,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000243 DATAJL010000000
VERSION     DATAJL010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2868
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42751"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..296
                     /locus_tag="VHN39_04655"
     CDS             <1..296
                     /locus_tag="VHN39_04655"
                     /inference="COORDINATES: protein motif:HMM:NF045039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815656.1"
                     /translation="GNMAINVDPGLNGGEDSGTATNKPIPRGAWTCFEWEITTAGSVT
                     LYMGGTQLSTAAKTKVPALIEMRIGYEHYNADKATGDLWIDDYAVGTSRITCM"
     gene            complement(507..1937)
                     /gene="ahcY"
                     /locus_tag="VHN39_04660"
     CDS             complement(507..1937)
                     /gene="ahcY"
                     /locus_tag="VHN39_04660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX2815657.1"
                     /translation="MTDYIVRDITLADFGRKELDIAETEMPGLMATRAEFGKDKPLKG
                     ARIAGSLHMTIQTGVLIETLQALGADVRWASCNIFSTQDHAAAAIAAKGTPVFAIKGE
                     TLVEYWEYAHKIFEWSDGGYPNMILDDGGDATLLCVLGPKAEKDPSVLNNPQNEEEEA
                     LYAVMKRYLKEKPGFYSAIRDAIKGVSEETTTGVHRLYQMHERGELPFAAINVNDSVT
                     KSKFDNLYGCRESLVDAIRRGTDVMLSGKVAVVLGYGDVGKGSAASLRNGGARVIVTE
                     IDPICALQAAMEGYEVVTMEDAAPLGDIFVTATGCVDVIVADHMRVMKDEAILCNIGH
                     FDSEIQVSWLETNPEVREENIKPQVDQFVLPGGRRLTLLARGRLVNLGCATGHPSFVM
                     SNSFTNQVIAQMALWENATKGKDATTGMTFASGKVYVLPKKLDEKVARLHLKKVGVKL
                     TTLTPVQAEYLGVSAEGPFKPDHYRY"
     gene            complement(2057..>2868)
                     /locus_tag="VHN39_04665"
     CDS             complement(2057..>2868)
                     /locus_tag="VHN39_04665"
                     /inference="COORDINATES: protein motif:HMM:NF017085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAD domain-containing protein"
                     /protein_id="HEX2815658.1"
                     /translation="LAQIAANAAALRIQPGPEAVHQLRVGVRRLRSTLTTFKPLLAAG
                     GLEPLKTQLRWLSHACDAARNLDVFAGETLDPAELGESAPAGLHLLRKAIEAARRRAW
                     AEAGEAAASERFRALMIDAAAWVETGGWLDGPGAGEAIQPFAKQALKRHLKALGKRGR
                     VARGGDDEARHHLRIAAKKLRYAAEALTSLYGEKRAAPYLERLKDLQEALGALNDLAA
                     AEPLIAMLTLSPEAAFAAGELVGLKAAGKPRLLTRAEKALDRLEAARPFWG"
BASE COUNT          443 a          948 c          975 g          502 t
ORIGIN      
        1 gcggcaacat ggccataaat gtcgaccccg ggctgaatgg tggcgaggac tctggaactg
       61 ccaccaacaa acccatacca cggggagcgt ggacgtgctt cgagtgggag atcaccactg
      121 cggggtcggt cacgctctac atgggcggaa cccagctgtc gacggcggcc aagaccaagg
      181 ttcccgcttt gatcgagatg cgcatcgggt acgagcacta caatgcggac aaggccactg
      241 gcgacctgtg gatcgacgac tatgccgtcg gtacttctcg catcacctgc atgtaagagg
      301 tgaacgacga agaacggcga ccccgtcatc gggtcgccgt agtctccaga tcagaacgat
      361 gcttttagcc gaagcctcag agcgaccgga gggagcgcgt tcatagacgt gagcgcgggc
      421 tgtgcccgcg ctcgctcacc tcagcaagct cccccggggg gctcgtgggg gggcgtcttc
      481 ggccccccac ggacgccgca ggcgcctcag taccggtagt gatccggctt gaacgggcct
      541 tccgcggaga cgccgaggta ctccgcctgc accggcgtga gggtggtcag cttgacgccg
      601 accttcttga ggtggaggcg cgccaccttc tcgtcgagct tcttcggaag cacgtagacc
      661 ttgccgctgg cgaaggtcat gccggtggtg gcgtccttgc ccttggtggc gttctcccac
      721 agggccatct gggcgatgac ctggttggtg aacgagttcg acatgacgaa gctcgggtga
      781 ccggtggcgc acccgaggtt cacgaggcgc ccccgcgcca gcagcgtcag gcgacgcccg
      841 cccggcagca cgaactggtc cacctgcggc ttgatgttct cctcgcgcac ctcggggttc
      901 gtctcgagcc agctcacctg gatctcgctg tcgaagtgcc cgatgttgca caggatggcc
      961 tcgtccttca tgacgcgcat gtggtctgcc acgatgacgt ccacgcaccc ggtggcggtc
     1021 acgaagatgt ccccgagcgg ggcggcgtcc tccatggtca cgacctcgta gccctccatg
     1081 gccgcctgca gggcgcagat cgggtcgatc tcggtgacga tcacgcgggc gccgccgttg
     1141 cgcagcgatg ccgccgagcc cttgcccacg tcgccgtagc ccagcaccac ggccaccttg
     1201 ccggacagca tcacgtcggt gccgcggcgg atggcgtcga ccagactctc gcggcagccg
     1261 tagaggttgt cgaacttcga cttggtgacg ctgtcattga cgttgatggc ggcgaacggc
     1321 agttcgccgc gctcatgcat ctggtagagg cggtggacgc ccgtggtggt ctcttccgaa
     1381 acacccttga tggcgtcgcg gatcgccgaa tagaagccgg gcttctcctt cagatagcgc
     1441 ttcatcaccg catagagggc ttcttcttcc tcgttctgcg gattgttgag gacgcttggg
     1501 tccttctcgg ccttggggcc caggacgcac agcagggtgg cgtcaccacc atcgtcgagg
     1561 atcatgttcg gatagccgcc gtccgaccat tcgaagatct tgtgggcgta ctcccagtac
     1621 tcgaccaggg tctcgccctt gatcgcgaag accggcgtgc ccttggccgc gatggcggcc
     1681 gcggcgtggt cctgggtcga gaagatgttg cacgaagccc agcgcacgtc ggcgccgagc
     1741 gcctgcaggg tctcgatcag gacgcccgtc tggatggtca tgtggaggga gccggcgatc
     1801 cgggcgccct tcaggggctt gtccttgccg aactcggcgc gcgtggccat caggcccggc
     1861 atttcggtct cggcgatgtc gagttccttg cggccgaaat cggcaagcgt gatgtccctg
     1921 acgatgtagt cggtcatttc agtcctcgga gggtgtcccc agatggggaa tgggggcggg
     1981 gaattgggtt ggcggctcta taacgacggg ccggccgcga ggcaagaaat catataaaga
     2041 tttctttatg cgattgttaa ccccagaagg gcctggcggc ctccagccgg tccagggcct
     2101 tttcggcccg cgtaagcagc cgcggcttgc cggcggcttt cagacccacc agctcgcccg
     2161 ccgcgaaggc cgcctccggg gagagggtca gcatcgcgat caggggctcg gcggccgcca
     2221 ggtcgttgag cgcgcccagg gcctcctgca gatccttcag gcgctccaga tagggcgccg
     2281 cgcgcttctc gccatagagg ctggtcagcg cctcggcggc gtagcgcagc ttcttggccg
     2341 cgatgcgcag gtgatgacgg gcctcgtcgt ccccgccccg ggcgacccgg ccgcgtttgc
     2401 cgagcgcttt caggtggcgc ttcagggcct gtttcgcgaa gggctggatc gcctcgcccg
     2461 cgccggggcc gtccagccag ccaccggtct ccacccaggc cgcggcgtcg atcatcaggg
     2521 cgcggaagcg ttcggacgcc gccgcctcgc cggcctcggc ccaggcccgc cgccgcgccg
     2581 cctcgatcgc cttgcgcagg aggtgcaggc ccgccggagc actctcgccc agctccgcgg
     2641 gatcaagggt ctcgccggcg aagacatcga gattgcgcgc cgcgtcgcag gcatggctga
     2701 gccaccggag ctgggtcttc agcggctcca gtccgccggc cgccagcagc ggcttgaagg
     2761 tggtgagcgt gctccgcaga cgccggaccc cgacccgcag ctgatggacc gcctcaggcc
     2821 ccggctggat gcgcagcgca gcggcgttgg cggcgatctg ggccagcg
//
LOCUS       DATAJL010000244         1752 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_16885,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000244 DATAJL010000000
VERSION     DATAJL010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16885"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..523)
                     /locus_tag="VHN39_04670"
     CDS             complement(<1..523)
                     /locus_tag="VHN39_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815659.1"
                     /translation="MFSSVLGGGAELRRVRADDSGFLDLLYNAAVEPDLWVPVMEQFA
                     DMIGGNSAWLSRLNVGDGAGSGVLARLDPAYSAIYLEHYAGVNPFSTTPDPRAFMSGW
                     KPMITTDDQWVPKEDLVGSEYYNDFLAPQQVHSMAMVRLAAHDLDVCAITVHRSEKAG
                     AFQRAELDLANRLH"
     gene            complement(587..1225)
                     /gene="eda"
                     /locus_tag="VHN39_04675"
     CDS             complement(587..1225)
                     /gene="eda"
                     /locus_tag="VHN39_04675"
                     /EC_number="4.1.2.14"
                     /EC_number="4.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008675 -
                     2-dehydro-3-deoxy-phosphogluconate aldolase activity
                     [Evidence IEA];
                     GO_function: GO:0008700 - 4-hydroxy-2-oxoglutarate
                     aldolase activity [Evidence IEA];
                     GO_process: GO:0009084 - glutamine family amino acid
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEX2815660.1"
                     /translation="MTPPSLTIDDILARAPVVPVLIIDDVAHAVPLGRALVAGGLSVL
                     EVTLRTPAAMDCIERMAGEIEGAVVGAGTVLSGATRRAVAGVGGQFCVSPGLIGGMSA
                     DGPIPLLPGIATATELMAGLAAGFTRFKLFPANIVGGVEALRAFASPFGQAKFCPTGG
                     VNAGNAADYLALPNVVCVGGSWVAPAEAVRAGDWGKITELARAACALAPKRA"
     gene            complement(1222..>1752)
                     /locus_tag="VHN39_04680"
     CDS             complement(1222..>1752)
                     /locus_tag="VHN39_04680"
                     /inference="COORDINATES: protein motif:HMM:NF014715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - glucose binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HEX2815661.1"
                     /translation="GLARSERGDMAVATEGGHAAFAPSDDVEVEVWSQLRARHGRVSI
                     ERLLSGRGLFEIYGVLAGMRQTEATLVDEKAVYDAAAKGDALAGETLDRFCGILGSVA
                     GDLALSVGARGGVFVSGGIAPKMADRLAAGQFRARFEDKGRLTPYLKEIPTSLVLHPY
                     PALIGAARELGMMERL"
BASE COUNT          283 a          603 c          640 g          226 t
ORIGIN      
        1 ggtgcaggcg gttggcgagg tccagttcgg cgcgctggaa ggcgccggcc ttctcggacc
       61 ggtgcacggt gatggcgcag acgtcgaggt cgtgcgccgc cagccggacc atggccatgg
      121 agtgcacctg ctgaggcgcc aggaagtcat tgtaatattc cgagccgacc agatcctcct
      181 tggggaccca ctggtcgtcg gtggtgatca tcggcttcca gccgctcatg aaggcgcgcg
      241 ggtccggcgt ggtcgagaac ggattcacgc cggcgtagtg ctccagatag atcgccgaat
      301 aggccggatc gagacgcgcc aggacgcccg agccggcgcc atcccccacg ttcaggcgcg
      361 acagccaagc ggagttgccg ccgatcatgt cggcgaactg ctccatcacg gggacccaga
      421 gatcgggctc caccgcggcg ttgtagagca ggtcgagaaa accgctgtcg tccgcccgca
      481 cgcgccgcaa ctccgccccg ccgccaagga cggaactaaa cacgctgata tctcaatggc
      541 tagcggacac gcctctaagg cgacggggcg ccggaaaaac gggcgcctag gctcgcttgg
      601 gcgcaagcgc gcaggccgcg cgcgcgagct cggtgatctt gccccagtcg ccggcgcgga
      661 cggcctcggc cggggcgacc cagctgccgc ccacgcagac cacgttggga agcgccaggt
      721 agtcggcggc gttacccgca ttgaccccgc cggtggggca gaacttcgcc tggccgaagg
      781 ggctggcgaa ggccctcagg gcctcaacgc cgccgacgat attggccggg aagagcttga
      841 agcgggtgaa gccggcggcc aggcccgcca tcagctccgt ggcggtggcg atcccgggca
      901 gcagcggtat ggggccgtcg gcgctcatgc cgccgatcag gccggggctg acgcagaact
      961 ggccgccgac gccggcgacg gcgcggcgcg tggcgcctga gagaacggtg cccgcgccca
     1021 ccaccgcgcc ttcgatctca ccggccatgc gctcgatgca gtccatggcc gcgggggtgc
     1081 gcagggtgac ctccagaacc gagagaccgc cggccaccag ggcgcggccc agcggcacgg
     1141 cgtgggcgac gtcatcgatg atcaggaccg ggacgacagg ggcgcgggcc aggatgtcat
     1201 cgatggtcag cgacggaggg gtcataggcg ctccatcatg cccagctccc gcgccgcgcc
     1261 gatcagcgcc ggataggggt gcagcaccag cgaggtgggg atttccttga ggtagggggt
     1321 gagacggccc ttgtcctcga accgggcgcg aaattgcccg gcggccaggc ggtcggccat
     1381 cttgggcgcg atgccgccgg agacgaagac cccgccacgg gccccgacgc tgagcgccag
     1441 gtcgccggcc accgagccca ggatgccgca gaaccggtcg agggtttcgc cggcgagcgc
     1501 gtcgcccttg gccgccgcgt cgtagaccgc cttctcgtca accagggtgg cttcggtctg
     1561 ccgcatgccg gcaaggacgc cgtagatctc aaagaggccg cggcccgaca gcaggcgctc
     1621 gatggagacc cggccgtggc gggcgcgcag ctggctccag acctcgacct ccacgtcgtc
     1681 ggatggcgcg aaggccgcgt ggccgccctc ggtggccacc gccatgtcgc cgcgctcgct
     1741 gcgggccagg cc
//
LOCUS       DATAJL010000245         1804 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_4028,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000245 DATAJL010000000
VERSION     DATAJL010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1804)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1804)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1804
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4028"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(98..943)
                     /locus_tag="VHN39_04685"
     CDS             complement(98..943)
                     /locus_tag="VHN39_04685"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004799 - thymidylate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEX2815662.1"
                     /translation="MNAHAAIQPLYKAAPDHPERQYLDLLADILANGVQRGDRTGTGT
                     LGVFGRQMRFDLAQGFPLLTTKKLHRKSIILELLWFLRGDTNVRWLQERGVSIWNEWA
                     DDAGELGPVYGKQWRSWTAPDGRVIDQIAAVVEGLKTNPNSRRHIVSAWNPAEMEDMA
                     LPPCHCLFQFFVADGKLSCQLYQRSADVFLGVPFNIASYALLTLMVAQVTGLQPGEFV
                     HTLGDAHLYLNHLDQAKLQLSREPLPLGQMHLTPRDDLFSFEFEDFKLEGYQAHPSIP
                     APIAV"
     gene            complement(1046..1588)
                     /locus_tag="VHN39_04690"
     CDS             complement(1046..1588)
                     /locus_tag="VHN39_04690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF924 family protein"
                     /protein_id="HEX2815663.1"
                     /translation="MTAHPNDVISFWRNAGPEKWFKKVTAFDEAIRLKFEPVHHRAAR
                     GEYDAWTESPDGALALLILLDQFPRNLYRKSAHAFATDPKARSIARTAVEAGFDKQVD
                     PPFRNFFYLPFEHSEDLADQDYCLALTTEAGVPYDIKWAAIHRDIIVRFGRFPHRNAA
                     LGRVMTPEEQAFLDEGGFGG"
BASE COUNT          298 a          537 c          661 g          308 t
ORIGIN      
        1 ggccgccgtc acggccgatg acgccgttgc gggcgcgggc gatggggccg gcggtgagag
       61 tgatggaggg catggaccct ccttagcaag ccagacgcta gaccgcgatg ggcgccggga
      121 tgctcgggtg ggcctggtag ccctcaagct tgaagtcctc gaactcgaag ctgaaaaggt
      181 cgtcgcgcgg cgtcaggtgc atctggccca agggcagggg ctcccgcgaa agctgcagct
      241 tcgcctgatc gaggtggttc aggtagaggt gggcgtcgcc cagggtgtgg acgaactcgc
      301 ccggctgaag gccggtgact tgcgcgacca tcagggtcag cagggcgtag gaggcgatgt
      361 tgaacggcac gccaaggaag acgtcggccg agcgctggta aagctgacag ctcagtttcc
      421 cgtccgccac gaagaactgg aacaggcagt ggcagggcgg cagcgccatg tcctccatct
      481 cggccgggtt ccaggccgag acgatgtgac ggcggctgtt ggggttggtc ttcaggccct
      541 cgaccaccgc ggcgatctgg tcgatcaccc ggccgtccgg cgcggtccag gaacgccact
      601 gcttgccgta gaccgggccg agttcgcccg cgtcgtcggc ccactcattc cagatggaga
      661 ccccgcgctc ctgcagccag cggacattgg tgtcgccgcg caggaaccag agaagttcca
      721 ggatgatgga tttgcggtgc agtttcttcg tcgtgagcag gggaaagccc tgggccaggt
      781 cgaagcgcat ctggcggccg aagacgccca gtgtgcccgt gcccgtgcgg tcgccgcgct
      841 ggacgccatt ggccaggatg tcagccaaca ggtcgaggta ctggcgctcc ggatggtccg
      901 gggcggcctt gtagagcggc tggatggcgg cgtgggcgtt catcgcaggt gattcgcggg
      961 tgattcgcac catgtaggaa tcaacgaatg aagccgtcga taagatcgcc tcaagaacct
     1021 gtggacgctt ggccggcctc gcggctcacc cgccgaaccc gccctcgtcg aggaacgcct
     1081 gctcctccgg cgtcatgacg cggcccaggg ccgcgttgcg gtgggggaag cggccgaagc
     1141 ggacgatgat gtcgcggtgg atggcggccc acttgatatc gtagggcacg ccggcctcgg
     1201 tggtgagcgc caggcagtag tcctggtcgg cgaggtcctc ggagtgttcg aatggcaggt
     1261 agaagaagtt gcggaacggc gggtccacct gcttgtcgaa tccggcctcg acggcggtgc
     1321 gggcgatgga cctggccttg ggatcggtgg cgaaggcgtg ggcggacttg cggtaaaggt
     1381 tgcgcgggaa ctgatcgagg aggatcaaca gggccagcgc gccgtcaggg ctctcggtcc
     1441 aggcgtcgta ctctccacgc gcggcgcggt ggtgtacagg ttcgaacttc agccggatgg
     1501 cctcgtcgaa ggctgtgacc ttcttgaacc acttttccgg cccggcattc cgccagaagc
     1561 tgatcacgtc gttgggatgc gccgtcaccg tgaggtgttc ctgcttcctg accctttggg
     1621 gcgttgcgtc gttcaagcgt ggttcagggg tgggagcaat agtaggcgta cgaccaatca
     1681 agccgttggg cccttcggcc cttggagcga gaccatgaag actatcacag ccaccctcgc
     1741 ggccctcctg ctggccggcg ccggcacggc ggcgctggcg caggaccgcg agcacgaccg
     1801 cggc
//
LOCUS       DATAJL010000246         4026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29724,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000246 DATAJL010000000
VERSION     DATAJL010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4026
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29724"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            54..299
                     /locus_tag="VHN39_04695"
     CDS             54..299
                     /locus_tag="VHN39_04695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815664.1"
                     /translation="MLDRLYLPALALAAVAAVALAAVWPQGFGDRSPAPFGSTPIQRT
                     PVMQAKMQRATAAAQRRSNQARAAVRDLQSQALAPSQ"
     gene            313..1278
                     /locus_tag="VHN39_04700"
     CDS             313..1278
                     /locus_tag="VHN39_04700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEX2815665.1"
                     /translation="MTDFDAIAVGRRVLAAEAEALTAQAAGLGRPFTEAVDRLFSAKG
                     RIVCTGMGKSGHVARKIAATFASTGSPAFFVHPAEASHGDLGMIGQEDVIIALSKSGE
                     VRELADVIAYATRFSIPLIALTGDPASTLGQAVDVVLQLAPAEEATSAVNAPTTSTTL
                     QLALGDALAVALLERRGFKPQDFRVFHPGGKIGAMLSTVGDLMHGLGELPLVEAATPM
                     EEALLVMTEKRWGIVGVTDARGRLTGAVTDGDLRRHIDGLMTKTAGEVMTPGPKKTVP
                     QTMLASEALALMSDPPPAVTVLFVVEAGTPVGILHIHDLLRAGVM"
     gene            1358..2860
                     /locus_tag="VHN39_04705"
     CDS             1358..2860
                     /locus_tag="VHN39_04705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEX2815666.1"
                     /translation="MLPAPRADLVENTYDFENLPLVKATGFREYDARWLFGPEINLLG
                     IQALGLGLGTYIHELGQNRIVVGHDYRSYSLSIKQALTIGLVAAGCEVIDIGLATSPM
                     AYFAQFDLDAPCVAMVTASHNENGWTGVKMGAQRPLTFGPDEMGRLKEIVLSGTWRQR
                     PGGSLAHVSGVAERYIADAASRASLKRPLTVVCACGNGTAGAFAPEALRRMGVAVVIE
                     MDCKLDWTFPRYNPNPEDSVMLHAMAQAVRQHGADLALGFDGDGDRCGVVDDEGEEIF
                     ADKIGLMLARDLSGLHKNATFVVDVKSTGLFATDQVLHANGATTVYWKTGHSYIKRKT
                     AELGALAGFEKSGHFFFNPPIGRGYDDGIVAAAAILSMLDRNADKKLSDLKKALPVAY
                     TSLTMSPHVADEVKYGLVDEVVAEYIALRDAGGTILGRKIADLITVNGVRVALEDGSW
                     VLVRASSNKPEIVVVVESTQSEDDMRALFHKEVKPRLAKRPEVGAYNQEI"
     gene            2943..>4026
                     /locus_tag="VHN39_04710"
     CDS             2943..>4026
                     /locus_tag="VHN39_04710"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HEX2815667.1"
                     /translation="MHVAMIGTGYVGLVSGACFADFGHTVTCIDKDAGKIERLQTGGI
                     PIYEPGLDLLVAQNVKAGRLFFATDAEKAVREADAVFIGVGTPSRRGDGYADLSYVYA
                     AVEEIAAFVQGFTVVVTKSTVPVGTGDEIEAIFQRVNPKADVAVVSNPEFLREGAAIE
                     DFKRPDRVVVGTLDERAQAVMRELYRPLYLNETPILFTSRRTSELIKYAANAFLALKI
                     TYINEMADLCEAVGADVQQVARGIGLDGRIGNKFLNAGPGYGGSCFPKDTIALVRTAR
                     DAGAPLDLVETTVKVNDERKRAMARKVIKALGGDVKGKTVGVLGLTFKPNTDDMRDAP
                     SLAIIPALQDKGAKVQAFDPEGHEARG"
BASE COUNT          677 a         1397 c         1351 g          601 t
ORIGIN      
        1 tccgatgagc caacggattg gtccgttgcg ggcgaagcag ctatagaacc cccatgctcg
       61 accgcctcta cctgcccgcc ctggccctgg ccgccgtcgc cgccgtcgcc ctcgcagccg
      121 tctggcccca aggcttcggc gaccgctcgc cggccccgtt cggttcgacg ccgatacaac
      181 gcaccccggt catgcaggcg aagatgcagc gcgcgacggc cgcggcccaa aggcgcagca
      241 accaggcccg cgccgcggtg cgcgatctcc agtcccaggc gctcgcgcct tcgcaatgaa
      301 gaacctggcg caatgaccga tttcgacgcg atcgcggtcg gccgccgggt gctggccgcc
      361 gaggccgaag ctctgacggc ccaggccgcg ggccttggga ggccctttac cgaggcggtc
      421 gaccggctgt tttcggcgaa aggccggatc gtctgcaccg gtatgggcaa atccggccac
      481 gtggcgcgca agatcgcggc gaccttcgcc tccaccggct cgccggcctt tttcgtgcat
      541 cccgccgagg ccagccacgg cgacctgggc atgatcggcc aggaggacgt gatcatcgcg
      601 ctctccaagt ccggcgaagt gcgcgagctc gccgacgtga tcgcctacgc cacgcggttt
      661 tcgattccgc tgatcgcgct caccggcgat ccggccagca cgctgggcca ggccgtcgac
      721 gtggtgctgc agctggcgcc cgccgaggag gcaacctcgg cggtcaacgc tccgaccacc
      781 tcgacgaccc tgcagttggc gctcggcgac gcgctggccg tggccctgct ggagcggcga
      841 gggttcaagc ctcaggattt ccgggtcttc catcccggcg gcaagatcgg cgctatgctg
      901 agcacagtcg gcgatctgat gcatggcttg ggcgaattgc cgctggtgga ggccgcgacg
      961 ccgatggagg aggcgctgct ggtgatgacc gaaaagcgct gggggatcgt cggcgtgacc
     1021 gatgcgcggg gccgtctgac cggtgcggtc accgacggcg atctgcgccg ccacatcgac
     1081 ggccttatga ccaagaccgc tggcgaggtg atgacgcccg gccccaagaa gaccgttccg
     1141 cagaccatgc tggcgtccga agcgctggcc ctgatgagcg atccgccgcc ggcggtgacg
     1201 gtgctgttcg tcgtcgaagc gggaacgccg gtcggcatcc tgcacatcca cgacctgctg
     1261 cgcgccggag tgatgtagaa ggctcgccgt acacattcct gaaggacccg agcggtcatc
     1321 gtccgcgccc gtccgccaga gtccccccgg agtcccgatg ctgccagctc cccgcgccga
     1381 ccttgtcgag aacacctacg acttcgagaa cctgccgctg gtgaaggcca cggggttccg
     1441 cgaatacgac gcgcgctggc tgttcgggcc ggaaatcaac ctcctgggca tccaggcgct
     1501 ggggctgggc ctggggacct acatccacga actcggccag aaccgcatcg ttgtgggcca
     1561 cgactaccgg tcctattcgc tctccatcaa acaggcgctc accatcggcc tggtggccgc
     1621 cggctgcgag gtgatcgaca tcggcctggc cacctcgccc atggcctatt tcgcccagtt
     1681 cgacctcgac gcgccctgcg tcgccatggt caccgccagc cacaacgaaa acggctggac
     1741 gggcgtgaag atgggcgcgc aacgcccgct gaccttcggc cccgacgaaa tgggccggtt
     1801 gaaggagatc gtgctctccg gaacctggag acagcgtccg ggcggcagcc tcgcccacgt
     1861 gagcggggtg gccgagcgct acatcgccga cgccgccagc cgcgcgagcc tcaagcggcc
     1921 actgacggtc gtctgcgcct gcggcaacgg cacggccgga gccttcgcgc ccgaggcgct
     1981 ccgccgcatg ggcgtggccg tggtcatcga gatggactgc aagctcgact ggaccttccc
     2041 ccgctacaat ccgaacccgg aagacagcgt catgctgcat gcgatggcgc aagcggtgcg
     2101 ccagcacggc gcggacctgg cgctgggctt cgatggcgac ggcgaccgct gcggcgtcgt
     2161 cgacgacgag ggtgaggaaa tcttcgccga caagatcggc ctgatgctgg cccgcgacct
     2221 ttccggcctg cacaagaacg ccaccttcgt cgtggacgtg aagtccaccg gcctcttcgc
     2281 caccgaccag gtgctgcacg ccaacggcgc caccaccgtc tactggaaga ccggccacag
     2341 ctacatcaag cgcaagaccg ccgagctggg cgcgctggcc ggcttcgaga agtccggcca
     2401 cttcttcttc aacccgccca tcgggcgcgg ctacgacgac ggcatcgtgg cggccgcggc
     2461 gatcctctcg atgctggacc gcaacgcgga caagaagctt tccgacctga agaaggcgct
     2521 gccggtcgcc tacacctcgc tcaccatgag cccgcacgtg gccgacgagg tgaagtatgg
     2581 cctcgtcgac gaggtggtcg ccgaatacat cgcactgcgc gacgccggcg gcacgatcct
     2641 gggccgcaag atcgccgacc tgatcaccgt caacggcgtc cgtgtggcgc tcgaggacgg
     2701 ctcctgggtg ctggtccgcg cctcgtccaa caagccggag atcgtggtgg tggtggagtc
     2761 gacccagagc gaggacgaca tgcgcgccct cttccacaag gaggtgaagc cgcgcctggc
     2821 caagcgcccc gaggtcggcg cctacaatca ggaaatctga acactgtgcc gctaagggct
     2881 agcggtcggc gcggcggcgt ggtgaaagcc cgccgctaga acgttcttcg gggatactgc
     2941 gcatgcatgt ggcgatgatc gggacaggct atgtgggcct cgtcagcggc gcctgtttcg
     3001 ccgacttcgg ccatacggtg acctgcatcg acaaggatgc gggcaagatc gagcgcctgc
     3061 agaccggcgg catcccgatc tacgagccgg gtctggacct gctggtggcc cagaacgtca
     3121 aggccgggcg cctgttcttc gccaccgatg cggaaaaggc ggtgcgcgag gccgacgcgg
     3181 tgttcatcgg cgtgggcacc ccctcgcggc gcggcgacgg ctatgcggac ctctcttacg
     3241 tctacgccgc cgtcgaggag atcgcggcct tcgtgcaagg cttcaccgtg gtggtcacca
     3301 agtccaccgt gccggtgggc acgggcgacg agatcgaggc gatcttccag cgcgtgaacc
     3361 ccaaggccga cgtggccgtg gtgtcgaacc cggagttcct gcgcgagggc gcggcgatcg
     3421 aggacttcaa gcgcccggac cgtgtcgtgg tcggcaccct ggacgaacgc gcccaggcgg
     3481 tgatgcgtga gctctaccgg ccgctctacc tcaacgagac gccgatcctg ttcaccagcc
     3541 ggcgcaccag cgaactgatc aaatacgccg ccaacgcctt cctggcgctg aagatcacct
     3601 acatcaacga gatggccgac ctctgcgaag cggtgggggc cgacgtgcag caggtggcgc
     3661 gcggcatcgg cctggacggc cgcattggga acaagttcct gaacgccggg cccggctacg
     3721 gcggctcctg cttcccgaaa gacaccatcg cgctggtgcg cacggcccgc gacgccggcg
     3781 cgccgctgga ccttgtcgag accaccgtaa aggtcaacga cgagcgcaaa cgggccatgg
     3841 cgcgcaaggt gatcaaggcg ctgggcggcg atgtgaaggg caagaccgtc ggcgtgctgg
     3901 gcctgacctt caagccgaac accgacgaca tgcgcgatgc gccgtcgctc gccatcatcc
     3961 cggcgctcca ggacaagggc gcgaaggtgc aggccttcga ccccgagggt cacgaggcgc
     4021 gcggcc
//
LOCUS       DATAJL010000247         4288 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_55409,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000247 DATAJL010000000
VERSION     DATAJL010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4288
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55409"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..268)
                     /locus_tag="VHN39_04715"
     CDS             complement(<1..268)
                     /locus_tag="VHN39_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl transferase family protein"
                     /protein_id="HEX2815668.1"
                     /translation="MEPRIWLIAGPTASGKSALALRLAQATGGEIVNADSMQLYADRR
                     VVTARPSPEEEAQAPHHLFGNVDAADGWSVGRWLRAATEVLDDIA"
     gene            267..1163
                     /gene="serB"
                     /locus_tag="VHN39_04720"
     CDS             267..1163
                     /gene="serB"
                     /locus_tag="VHN39_04720"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517555.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEX2815669.1"
                     /translation="MDLVLTLVAPPNAGAFSVNLREVFASVGARGKESRKLDAGEGAA
                     TDVILEADDLMAVRAALEAPMADQQLDWCLQTLEGRKKRLLIADMDSTIINVECLDEL
                     ADFAGLKAEISAITERTMRGELPFEAALRERVAMLKGLPVTALQQTYDERVRLNPGAR
                     TLVRTMAANGARCVLVSGGFSFFTSRVAQAALFQAHRGNTLGEADGLLTGTVGEPILG
                     REAKLEALKEEAAAKQLPLSATLAIGDGANDLAMIEAAGLGVAYHAKPIVAAQADARV
                     DHTDLTSLLYFQGYSAEAFVTG"
     gene            1212..1889
                     /locus_tag="VHN39_04725"
     CDS             1212..1889
                     /locus_tag="VHN39_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEX2815670.1"
                     /translation="MSLPREVKAVIFDMDGLLVDTEVVYCEALTVQAADMGRDLPQAV
                     LRRMIGSSWAGSAAILTEHFGEGFDTDALREGSILRFYELAEGGIALKAGVREILDVL
                     MSADIPRAIATSSRRHEVEHHMGAHGLLDGFQAVVASGDYARAKPAPDPFLTAAERLG
                     VAPEDCLALEDSHNGVRAASAAGMMTIMVPDLLDATEEMHSLCVRIARDLHEVRDLLL
                     AQRSAIQ"
     gene            complement(1868..2377)
                     /locus_tag="VHN39_04730"
     CDS             complement(1868..2377)
                     /locus_tag="VHN39_04730"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2815671.1"
                     /translation="MASFVHALHEGYSRDTLRDETPETIAAIADAPEWYLRSLHNPPT
                     TVVLPDGTVGPRVPETHLWYAEGDDFLGSISARHSLTPMLEQWGGHIGYAVRPSAWGQ
                     GHASAMLGLMLDHVRQHLPLERVTLTANVKNPASIRVIEKNGGTLRDEVDHPWVPGDR
                     GRRYWIALR"
     gene            complement(2424..3332)
                     /locus_tag="VHN39_04735"
     CDS             complement(2424..3332)
                     /locus_tag="VHN39_04735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HEX2815672.1"
                     /translation="MSRSSPLIVYLVVAFVAIVVLANTLFVVEQRQEAIVVRFGEPVR
                     VIHAPGQPGAGLNFKQPFVENVIKFDRRNLDLEAAQEEIIASDEKRLVVDAFLRYRIS
                     DPLQYYRTLRNEQIAQDRLERLVNSSLRQILGSATQPDIISDRRDQLMQATKLDVENR
                     AKASRLGIEVIDLRIKRVDLPGAIQPTVFRRMQTQRQQIAAQTRAKGEQQKREIIASA
                     DKEVAITLATAQQTGETTRGEGDALRTRIFGQAYGKDPSFAAFYRSMQAYEAGLGQGD
                     TTLVLSPDSAFFKYFEAGPSGGGAKR"
     gene            complement(3329..>4288)
                     /gene="hflK"
                     /locus_tag="VHN39_04740"
     CDS             complement(3329..>4288)
                     /gene="hflK"
                     /locus_tag="VHN39_04740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0045861 - negative regulation of
                     proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HEX2815673.1"
                     /translation="IAAIAAVAFALWALSGLYVVQPNEQAVVTTFGAYSRSETPGLRY
                     HLPTPIEHVEKVPVTTLNRLDIGGTGTPDGDIPQESLMLTSDENIVDVNFSVTWRVAD
                     ASRYLFATRSPEDAVKAVAESSMREVVGKTELEPILTNGRGKVQLQTADLMQKTLDRW
                     GAGVSVVEVQIRTANPPPEVVAAFRDVSNAQQDAASAVNEGDTYRNRVVNEAKGDAAK
                     IIQSAQGYREQSVRTATGDAARFNSIYNEYKRSPQATRDRLYLETMERVLQHSNKVVI
                     SGKGVTAPVILPPDVFRPRSGPAAAPPAPATQAAPIPQPGAGQ"
BASE COUNT          646 a         1401 c         1520 g          721 t
ORIGIN      
        1 tggcgatgtc gtccagcacc tccgtcgccg cccgcagcca gcggcccacc gaccagccgt
       61 cggcggcgtc gacatttccg aacagatgat gcggcgcctg ggcctcctcc tcaggggacg
      121 ggcgggcggt caccacgcgc cggtcggcat agagctgcat ggagtcggcg ttgacgatct
      181 cgccgcctgt cgcctgggcc aaccgcaggg cgagcgccga cttgccgctt gcggtgggtc
      241 cggcgatcag ccagatgcgg ggctccatgg atctcgtgct caccctcgtg gcgcccccca
      301 acgccggggc cttctcggtc aacctacgcg aagtgttcgc cagcgtcggc gcgcgcggca
      361 aggaatctcg caagctggac gccggcgagg gcgcggccac cgacgtgatc ctggaagccg
      421 acgacctgat ggcggtgcgc gccgcacttg aagcgccgat ggccgatcag cagctcgact
      481 ggtgtctgca gaccctggag gggcggaaga agcgcctgct gatcgccgac atggattcca
      541 cgatcatcaa cgtcgagtgt ctggacgaac tggccgattt cgcgggcctg aaggcagaga
      601 tctcggcgat taccgaacgc accatgcggg gcgaactccc cttcgaggcc gcgctgcgcg
      661 agcgggtggc gatgctgaag ggcctgccgg tcacggcgtt gcaacagaca tacgacgagc
      721 gggtcaggct caatcccggc gcgcgcaccc tggtcaggac catggccgcc aacggcgcgc
      781 gctgcgtgct ggtctcgggc gggttttcgt tcttcaccag ccgggtggcg caggcggccc
      841 ttttccaggc ccaccggggc aatacgctgg gcgaggctga cggcctgctg accggaacgg
      901 tcggcgagcc gatcctcggt cgcgaggcca agctggaggc gctgaaggaa gaggcggccg
      961 ccaagcaact gccgctctcc gccacgctgg ccatcggcga tggagcgaac gatctggcga
     1021 tgatcgaggc cgccggcctg ggcgtcgcct atcacgccaa gcccatcgtg gccgcccagg
     1081 ccgacgcgcg ggtggaccac acggacctga cgagtctgct ctacttccag ggctattcgg
     1141 ccgaggcttt cgttacaggc tgaagccggc cttgatttgc accggcccgg cgactccgct
     1201 tagtccgcgc catgagcctg ccgcgcgaag tgaaagccgt catcttcgac atggacggcc
     1261 tgctggtcga taccgaggtc gtctactgcg aggcgctcac agtccaggcg gcggacatgg
     1321 ggcgcgacct gccgcaggcg gtgctcaggc gcatgatcgg ctcgtcctgg gccggcagcg
     1381 ccgcgatcct gaccgaacac ttcggcgagg gcttcgacac cgacgccctg cgtgaaggtt
     1441 cgattcttcg gttctacgag ctggcggagg gcggcatcgc gctcaaggcc ggcgtgcggg
     1501 aaatcctgga tgtgcttatg tccgctgaca ttccgcgggc catcgccact tcgtcacgtc
     1561 gccacgaggt cgagcaccac atgggggctc atgggctcct ggacgggttc caggcggtgg
     1621 tggccagcgg cgactatgcg cgcgccaagc ccgcgccaga tccgttcctc accgccgctg
     1681 agcggttagg cgtagcgccg gaggattgcc tggccctgga ggattcccac aacggggtcc
     1741 gcgccgcctc ggccgccgga atgatgacga tcatggtgcc ggacctgctc gacgccaccg
     1801 aggagatgca cagcctctgc gtccgcatcg cccgcgacct gcacgaggtg cgcgacctgc
     1861 tcctggctca gcgcagcgcg atccaatagc gccggccccg gtcgccggga acccaggggt
     1921 ggtcgacctc gtcgcgcagg gtcccgccgt tcttctcgat cacccggatc gaagcgggat
     1981 tcttgacgtt ggcggtcagc gtcacgcgct cgagcggcag gtgttggcgc acgtggtcca
     2041 gcatcaggcc gagcatggcc gaggcgtggc cctggcccca ggctgagggg cgcacggcgt
     2101 agccgatgtg gccgccccat tgctccagca tcggcgtcag gctgtggcgc gcgctgatcg
     2161 agcccaggaa gtcatcgccc tcggcgtacc agaggtgggt ctcgggaacc cgcgggccca
     2221 cggtcccgtc cggcaggaca actgtcgtcg ggggattgtg cagcgagcgc agataccact
     2281 ccggcgcatc ggcgatggcc gcgatggttt ccggcgtctc gtcgcgcagg gtgtcgcggg
     2341 aatagccctc atgcagagcg tgcacgaacg acgccatttg caccatgtcc ggccgcaaga
     2401 ggcttggcac taggcttggg gcatcagcgc ttggcgccgc cacccgaggg tccggcctcg
     2461 aagtacttga agaaggcgct gtccggcgag agcaccaggg tcgtgtcgcc ttggccgagc
     2521 cccgcttcat aggcctgcat cgagcggtag aaggccgcga agctgggatc cttgccgtag
     2581 gcttggccga agatgcgcgt tctcagcgcg tcgccctcgc cgcgggtggt ctcgccggtc
     2641 tgctgggcgg tggccagggt gatcgccact tccttgtcgg ccgacgcaat gatttcacgc
     2701 ttctgctgct cgcccttggc gcgggtttgc gccgcgatct gctggcgctg agtctgcatg
     2761 cggcggaaca cggtgggctg gatcgcgccc ggcaggtcga cgcgcttgat gcgcaggtcg
     2821 atgacctcga tgccgagtcg cgaggccttg gcccggtttt ccacatccag cttggtcgcc
     2881 tgcatcagct gatcgcggcg gtcggagatg atgtcgggct gggtcgccga gccgagaatc
     2941 tggcgcagcg aggagttcac caggcgctcc agccggtcct gcgcgatctg ctcgttgcgc
     3001 agggtgcggt aatactgaag cggatcggaa atccggtagc gcaggaaggc gtcgacgacg
     3061 aggcgcttct cgtcggaggc gatgatctct tcctgggccg cctccagatc gaggttccgc
     3121 cggtcgaact tgatcacgtt ctcgacgaac ggctgcttga aattgaggcc cgcgcccggc
     3181 tggcctggcg catggatcac ccgcaccggt tcgccaaagc ggacgacgat cgcctcctgc
     3241 cgctgctcaa cgacgaacag ggtgttggcc agcacaacga tcgcgacgaa ggccacgaca
     3301 agatagacga tcagcgggct tgagcggctc attgaccggc tcccggctgc ggaatcggcg
     3361 cggcctgggt ggccggcgcg ggcggggccg cggctggccc gctgcggggc cggaacacat
     3421 cgggcggcag gatcaccgga gcggtcacgc ccttgccgga aatgaccacc ttgttggagt
     3481 gctgcagcac gcgctccatg gtttcgaggt agaggcggtc gcgggtggcc tggggcgagc
     3541 gcttgtactc attgtagatc gagttgaagc gcgccgcgtc gccggtggcg gtgcgcacgg
     3601 actgctcgcg atagccctgg gctgactgga tgatcttggc ggcgtcgccc ttggcctcgt
     3661 tgaccacccg attgcgatag gtgtcgccct cgttgaccgc ggaggcggcg tcctgctgcg
     3721 cgttgctcac gtcgcggaag gcggcgacca cctcaggcgg cgggttggcc gtccggatct
     3781 gcacttccac gacgctgacg ccggcgcccc agcggtcgag ggtcttctgc atcaggtccg
     3841 cggtctgaag ttgcaccttg ccgcggccgt tggtcagaat cggttccagc tcggtcttgc
     3901 cgaccacttc gcgcatcgag ctctcggcga cggccttgac cgcgtcctcg ggcgagcggg
     3961 tggcgaacag gtagcggctg gcgtcggcga cccgccaggt gacgctgaaa ttcacgtcga
     4021 cgatgttctc gtcgctggtc agcatcaggc tttcctgcgg gatatcgccg tctggggtgc
     4081 cggtgccgcc gatgtccaga cggttgaggg tggtgaccgg caccttctcc acatgctcga
     4141 tcggcgtcgg caggtggtag cgcaggccag gcgtctcgga ccgtgaatag gcgccgaagg
     4201 tggtgaccac ggcctgctcg ttgggctgca ccacatagag gccggagagc gcccagagcg
     4261 cgaaggcgac cgcggcgatg gccgcgat
//
LOCUS       DATAJL010000248         1732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117690,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000248 DATAJL010000000
VERSION     DATAJL010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117690"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            48..338
                     /locus_tag="VHN39_04745"
     CDS             48..338
                     /locus_tag="VHN39_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017504504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HEX2815674.1"
                     /translation="MQTQNPFLDEMAKLSTAAMGLAQAAGEEAKAAFRAQADRMVAEL
                     DLIRRDDFDALKAEVASLRAELEALRAAPPAASKPSKAPKTSSQGPKTGGDA"
     gene            483..986
                     /locus_tag="VHN39_04750"
     CDS             483..986
                     /locus_tag="VHN39_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HEX2815675.1"
                     /translation="MDTLTSDDSVQLGSDPLDVVEHVLAAENLPFDRTEDGDLAFSLA
                     GDWKDYELWFAWRPEGDCLQLCLSMDLTVATEQRAAAQDLIAQVNPRVWLGHFELWED
                     GEVIFRHGMALMTGEQPSLAQAAAMIDVAVEGADRFYPAFDFLAKGLKSPAEAIAACM
                     FETVGEA"
     gene            1201..>1732
                     /locus_tag="VHN39_04755"
     CDS             1201..>1732
                     /locus_tag="VHN39_04755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX2815676.1"
                     /translation="MTPILMLGAGRMGGAILEGWMRAGAFAPAELIIVDPYPSEAALA
                     AASGGATLNPPDAELAAARTVVLAVKPQKWLEAAAQYAGSLADDAVIVSIAAGVGSKD
                     ISRAFGGRTVARVMPNTAAAINQGTMSLYADDPAALARAHALFEPLGTVVDLPDENLI
                     HAATAVAGSGPAYLYAF"
BASE COUNT          294 a          563 c          595 g          280 t
ORIGIN      
        1 atataaggat ggatggcggg cccgttgtcc gcctttcaga gcgtgagatg cagacacaga
       61 atcccttcct tgatgagatg gccaagctgt cgacggcggc catgggccta gcccaggcgg
      121 cgggcgaaga ggccaaggcc gcgttccgcg cccaggccga ccggatggtc gccgaactcg
      181 acctgatccg ccgcgacgac ttcgatgcgc tgaaggccga ggtggcgtcg cttcgggccg
      241 agttggaggc gctgcgggcc gcccctcctg cggcgtcaaa gccttcgaaa gcccccaaga
      301 cctcaagtca ggggccaaag acaggcggcg acgcctgaaa aaccccctgc acacgcgaat
      361 gtggctcgcc tcgggcacga accgggtgac gcaacgctcg caaatcacac taatttcagt
      421 atcgcaggcg attcgggggc ggccggctgc tccccgcgcg ctgcgaaagg atcatgggtc
      481 tcatggatac cctaacgtct gacgacagcg tccagctcgg cagcgatccg ctcgacgtgg
      541 tggagcatgt gctggccgcc gagaacctgc ccttcgaccg caccgaggac ggcgacctgg
      601 ccttctcgct ggccggggac tggaaggact acgaactctg gttcgcctgg cggcccgagg
      661 gcgactgcct gcagctgtgc ctgtccatgg atttgacggt cgccaccgaa cagcgcgcgg
      721 cggcccagga cctcatcgcc caggtgaacc cgcgcgtctg gctcggccat ttcgagctct
      781 gggaagacgg cgaggtgatc ttccgccacg gcatggcgct gatgaccggc gaacagccga
      841 gcctggccca ggccgccgcc atgatcgacg tggccgtgga aggcgccgac cgcttctacc
      901 cagccttcga cttcctggcg aagggattga agtctcccgc cgaagccatc gcagcctgca
      961 tgtttgagac ggtgggcgag gcctgaggct tcaccactga gattgcgttg ggcgcgccgg
     1021 ccgctagcgt gccggatttg aagttcggct gattgctgga cgaggctcgg cgcgaacttc
     1081 aaatccaaaa agcacgctag aaacataagc ttgctagtgt cctcttcgat tccgaagttc
     1141 ctcggagttc gccataagcg cttgcgaact tcggaatcgg gacactaggg tcggggcatg
     1201 atcacgccga tcctgatgct gggcgccggc cgtatgggcg gggcgatcct tgagggctgg
     1261 atgagggccg gggccttcgc gccggccgag ctgatcatcg tcgatcccta tccgtcggaa
     1321 gcggccctgg cggcggccag cggcggcgcg acgctcaatc cccctgacgc cgagctcgcc
     1381 gccgcgcgca ccgtagtcct ggccgtgaaa ccgcagaagt ggctggaggc ggcggcgcag
     1441 tacgccggct cgctggcgga cgatgcggtg atcgtctcca tcgcggcggg cgtcggctcg
     1501 aaggacatct cccgcgcgtt cggcgggcgg acggtggcgc gggtcatgcc caacacggcg
     1561 gcggccatca accagggaac catgagcctc tatgcggacg acccggcggc gctcgcccgg
     1621 gcgcatgcgc tgttcgagcc gctggggacg gtggtcgacc ttcccgacga gaacctgatc
     1681 catgcggcga cggcggtggc ggggtcgggg ccggcctatc tctacgcctt ca
//
LOCUS       DATAJL010000249         4032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42800,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000249 DATAJL010000000
VERSION     DATAJL010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4032
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42800"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..1193
                     /locus_tag="VHN39_04760"
     CDS             171..1193
                     /locus_tag="VHN39_04760"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEX2815677.1"
                     /translation="MAPGAFPILFITSNRIGDAVLSSGLIKRLSDEIPNARFTVVAGP
                     VAAPLFEEVPTLDRIIVLAKTKNRGHWFGLWREVRATRWGLVVDLRGSGLSRFISTRR
                     RAIWRKVPGSSVHKVIEAARILKIEDDPAPPFIFTTPETEARADELTAGFGPILALAP
                     GANWLGKTWPLERFSRVAMRLLDPEGPMKGGRLMVLGGPEEQKLAKGLRDVVMRSQFI
                     NLTEDTDLLTAYACLKRARLFIGNDSGTMHLAAAAGIPTLALFGPSDEQLYGPWGADT
                     RVARGPRTYEQIRAVDPSFGQALCHMMDLTVETVGQAAEELLAATDGGPKARMAEALI
                     VETPNG"
     gene            1186..2520
                     /locus_tag="VHN39_04765"
     CDS             1186..2520
                     /locus_tag="VHN39_04765"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEX2815678.1"
                     /translation="MAETYDLIVRGGEVVNHAGRGMADVGVRGGKIAAVGDLGQASAG
                     EVFDASGLTIMPGVIDTQVHFREPGLEWKEDLESGSRSAVLGGVVAVFEMPNTEPTTT
                     DPDALADKLARAKGRMHCDHAFYVGGTHENARWLGELERLPGCCGVKVFMGASTGSLL
                     VQDDEGIEQVLRHVNRRAAFHSEDEYRLADRRPLARTGDWTSHYEVRDAQSAIQSTER
                     LVRIATALGKRIHVLHVTTEQEIAYLAAHKDVASVELTPQHLTFAGPEIYERLKGYAQ
                     MNPPIRGAEHRAALWAGLASGVADVLGSDHSPHTSEEKARPYPASPSGMPGVQTLLPV
                     MLTHVADGKLSLERLVDLTSHGANRLFGLADKGRLAEGYDADLTIVDLKARRTITHAG
                     TASRVGWTAFDGMEAKGWPMATIIRGTVVMRDDEVIAPHRGEPVRFNETLVA"
     gene            2676..3254
                     /locus_tag="VHN39_04770"
     CDS             2676..3254
                     /locus_tag="VHN39_04770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815679.1"
                     /translation="MAHLDLGTGQDTLLAVVLGAALATVGGVLAGQIENQLIRRERER
                     NAGLLFGEILAALNMILQLADEARGRGDPYGPITMRILKAAQRETQIYDRNRELLFAV
                     RDAKLRARTHILLLQMSLTLDAIFEAASAMDPPADDRQALLAGGFDFLLELREGIPDL
                     LEKYKRIAKYSFDAHERGANPSPLAQRAPAPT"
     gene            complement(3251..3673)
                     /locus_tag="VHN39_04775"
     CDS             complement(3251..3673)
                     /locus_tag="VHN39_04775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815680.1"
                     /translation="MKLLLLAALAGATAASGGTALGATNQSLSGSPCFFVRDVGDRTV
                     GGPHTLYFKVKDVAHMHALAYYHVETSGRCLAGVDSPTEHAGFSVGIWTPAAGRAAQI
                     CSQKDLRISADGGPTCRVASFTRMTPTEVAALPRGIRP"
     gene            3826..>4032
                     /locus_tag="VHN39_04780"
     CDS             3826..>4032
                     /locus_tag="VHN39_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815681.1"
                     /translation="MLRREPGRQTLHRWRGLGLMILAQLALVSTASAAGYRTPRTPWG
                     EPNLQGQWTNFALTRLERPLGVPAR"
BASE COUNT          653 a         1374 c         1379 g          626 t
ORIGIN      
        1 tttcgacgtc ctggctgagt agaccctgca ggaaatcccg ccagtccggc ccggccagcg
       61 cgatcaggga ccggctcttc aggggcgcaa aggtcagggt ttcgctcatg cggtgcaatt
      121 tggggtctgc ggctgtggag cgccagcact gtgcgcccta tagaggattg atggcccccg
      181 gcgcgttccc cattctgttc atcacctcca accgcatcgg cgatgcggtg ctgtcctcgg
      241 ggctgatcaa gcggctgtcg gacgaaatcc ccaacgcccg cttcaccgtg gtcgcaggtc
      301 ccgtggccgc gccgctcttc gaggaggtgc cgaccctcga ccggatcatc gtgctggcca
      361 agaccaagaa ccgcggccac tggttcgggc tgtggcgcga agtgcgcgcc acgcgctggg
      421 gcctggtggt cgacctgagg ggctcgggcc tctcgcgctt catctcgacg cggcggcggg
      481 cgatctggcg caaggttccc ggatcgtccg tgcacaaggt gatcgaggcc gcccggatcc
      541 tgaagatcga ggacgatccg gcgccgccct tcatcttcac gacacccgag accgaggccc
      601 gcgccgatga gctgaccgcg ggcttcggcc cgatcctggc gctggcgccg ggcgccaact
      661 ggctgggcaa gacctggccg cttgagcgct tttcccgcgt cgccatgcgg ctgctcgacc
      721 cggaaggccc catgaagggc ggccggctga tggtgctggg cgggccggag gagcagaagc
      781 tcgccaaggg cctgcgcgac gtggtcatgc gcagccagtt catcaacctg accgaggaca
      841 ccgacctgct caccgcctac gcctgcctga agcgggcgcg cctgttcatc ggcaacgatt
      901 cggggaccat gcacctggct gccgccgccg gcatcccgac cctggcgctg ttcggcccct
      961 ccgatgagca gctctatggc ccctggggcg cggacactcg ggtggcgcga ggccctcgga
     1021 cctatgagca gatccgggca gttgacccca gcttcggcca ggcgctctgt cacatgatgg
     1081 acctgaccgt ggaaacggtc gggcaggccg cggaagagct gctggccgcc acggatgggg
     1141 gtccgaaggc gcgaatggct gaggccctaa tagtcgagac cccgaatggc tgagacctac
     1201 gacctgatcg tgcgcggcgg ggaggtggtg aaccatgcgg gtcgtggcat ggctgacgtg
     1261 ggcgtgcgcg gcggcaagat cgccgcggtg ggcgacttgg gacaggcttc ggccggcgag
     1321 gtgttcgacg cctcggggct gacgatcatg ccgggcgtca tcgacaccca ggtccatttc
     1381 cgcgaacccg gactggagtg gaaggaagac ctcgaaagcg gatcccgctc ggccgtcctg
     1441 ggcggcgtgg tcgcggtctt cgagatgccc aacaccgagc ccaccaccac cgacccggac
     1501 gcgttggccg acaagctcgc ccgcgccaag ggccgcatgc actgcgacca cgctttctac
     1561 gtcggcggca cccacgagaa cgccaggtgg ctgggcgagc tggagcgcct gcccggctgc
     1621 tgcggcgtca aggtgttcat gggagcctcg accgggagcc tgttggtgca ggacgacgag
     1681 ggcattgagc aggtgctgcg tcacgtgaac cgccgcgcgg cctttcattc cgaggacgaa
     1741 taccggcttg ccgatcgccg tcctctcgcc cgcaccggcg actggaccag ccactacgag
     1801 gtccgcgacg cccagtcggc gatccagtcc accgagcggc tggtgcggat cgccaccgcg
     1861 ctgggcaagc gcatccacgt cctgcacgtg accaccgagc aggagatcgc ctatctcgcc
     1921 gcgcacaagg atgtggccag cgttgagctc acgccgcagc acctgacgtt cgccgggcct
     1981 gagatctacg agcgcctgaa gggctatgcc cagatgaacc caccgatccg cggcgccgag
     2041 catcgcgccg cgctctgggc gggcctcgcc agcggggtcg ccgacgtgct gggctccgac
     2101 cactcgccac acaccagcga ggaaaaggcc cggccctatc ccgcgtcgcc ctccggcatg
     2161 cccggggtgc agaccctgct gccggtgatg ctgacccacg tggcggacgg caagctctcg
     2221 ctcgagcggc tggtcgacct gaccagccat ggcgcgaacc gcctgttcgg tctcgccgac
     2281 aagggccggc tggccgaagg ctacgacgcc gacctgacca tcgtcgacct caaggcgcgg
     2341 cgaacgatca cccacgccgg cacggccagc cgggtcggct ggaccgcctt cgacgggatg
     2401 gaggccaagg gctggcccat ggccacgatc atccgcggga ccgtggtcat gcgcgacgac
     2461 gaggtgatcg ccccgcatcg tggcgagccc gtgcggttca acgagaccct ggtggcctag
     2521 tgtgctgatc tgaagttcgc ctgctgattg gatggagcgc ggcgcgaacc caagaagcac
     2581 actggaaata ggagcttgct agtgtcctca tcgattccga agttcgccgg agcccgcccc
     2641 aaacgcttgc gaacttcgga atcgggacac tagacgtggc gcatctcgat ctcggcacag
     2701 gtcaggacac cctgctggcg gtcgtgctcg gcgccgcact ggcgaccgtg ggcggggtgc
     2761 tcgccggaca gattgaaaac cagctgatcc gcagggaacg cgagcgcaac gccggcctgc
     2821 tgttcggcga aatcctcgcc gcgctgaaca tgatcctgca gttggccgat gaggcgcgcg
     2881 ggcgcggcga tccctacggc ccgatcacca tgcgcatcct gaaggcggcg cagcgggaga
     2941 cccagatcta cgaccgcaat cgcgaactgc tcttcgccgt gcgcgacgcg aagctccggg
     3001 cgcgcaccca catcctgctc ttgcagatga gcctgaccct ggacgcgatc ttcgaagccg
     3061 cctcggcgat ggaccccccg gctgacgacc gccaggcttt gctggcaggg ggcttcgact
     3121 ttctgctgga gcttcgcgag ggaatccccg acctgctcga aaagtacaag cgcatcgcca
     3181 agtacagctt cgacgctcac gagcggggcg cgaaccccag cccgctcgcc cagcgcgcgc
     3241 cggcgccgac ctagggacgg atcccgcgcg gtagggccgc cacttcggtc ggcgtcatgc
     3301 gggtgaagct ggcgaccctg caggtggggc cgccgtcggc cgaaatcctg agatccttct
     3361 ggctgcatat ctgcgcggcc cggccagccg ccggggtcca gatgcccacg ctgaagccgg
     3421 cgtgctcggt cggcgagtcc acacccgcca ggcagcgccc gctggtttcc acgtggtagt
     3481 aggcgagcgc gtgcatgtgg gcgacgtcct tcaccttgaa atagagagtg tgtggacccc
     3541 cgaccgtgcg gtcgccgacg tcgcggacga agaagcaagg actaccggaa agcgattggt
     3601 tcgtggcgcc gagggccgtg ccgccggacg cggcggttgc gccggccaag gcggcgagaa
     3661 gaagaagctt catagcggtt ctcccttttt atgacgccgt tatacgtccc cgcctgttcc
     3721 ggcgatattg ctgagttgac gccaactggc cgaccttgcc ggcgcccctg acttgggttg
     3781 atctagggtc aagcttcgcg gtcggtgagg ccggggggcg acaacatgct gagacgtgag
     3841 cctgggcggc aaaccctgca tcgatggcgt ggcctgggcc tgatgatcct ggcccaactc
     3901 gcccttgtct cgacggcctc ggcggcgggc taccggacgc cgcggacccc ctggggcgag
     3961 ccgaacctgc agggccagtg gaccaacttc gccctcaccc ggcttgagcg gccgctcggc
     4021 gttcccgcca gg
//
LOCUS       DATAJL010000250         1892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_16929,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000250 DATAJL010000000
VERSION     DATAJL010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16929"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..227)
                     /locus_tag="VHN39_04785"
     CDS             complement(<1..227)
                     /locus_tag="VHN39_04785"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2815682.1"
                     /translation="MKSPVSPQNLRDRQREETREQILRAVGHQLEQGPLEDLSFAEIA
                     KDAKVGERTVYRYFPTKEALLGAFWAWMQSQA"
     gene            complement(344..1093)
                     /locus_tag="VHN39_04790"
                     /pseudo
     CDS             complement(344..1093)
                     /locus_tag="VHN39_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523857.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
     gene            1248..1883
                     /locus_tag="VHN39_04795"
     CDS             1248..1883
                     /locus_tag="VHN39_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2815683.1"
                     /translation="MDAHTYAGKATPKSLRTRARILNAAMRLFAELGYHEATNPRIAQ
                     AASLTRGAMLYHFASREELVEAAVQHIELARAALFESAAQASAAPGQDASEAAIDAYW
                     ALLHETPFVAFAELESAARTDPMLRTRLATAQTAFDRAQVGDRFGALAQAGADPRFQT
                     SRDLGRFLLEGVARGAMTYDEPARRQRLLAVVKRAVRMLNRKGGVQDLWVD"
BASE COUNT          289 a          692 c          608 g          303 t
ORIGIN      
        1 gcctggctct gcatccaggc ccagaaggcg cccagcagcg cctccttggt ggggaaatag
       61 cggtagacgg tccgctcgcc gaccttggcg tccttggcga tctccgcgaa gctgaggtcc
      121 tcgagcgggc cctgctccag ctggtggccc accgcgcgca ggatttgctc gcgcgtctcc
      181 tcgcgctgcc ggtcgcgaag gttctggggg gagaccggcg atttcatgac agccgcactg
      241 tcacgagttc ccgagacctg tcaatcgatg agcggcccgc tctagggggt caggcggcca
      301 gcggctcggc gaggccctga agcaccggcg ccgcgaactg ctcgcggacc ttcgtccatt
      361 ccaggatctc aagttcgccg tcggcgtgct caaccagcgc ggtgcagctc tccacccagt
      421 cgccgtcgtt gatgtaggcg acgccatcga tcatccggct ctcggccttg tggatgtggc
      481 cgcagatcac cccgtccacc ccgcgccggc gcgcctcgtc ggccaccgcc tgctcgaagt
      541 tctcgatgaa ctgcagggcc ttcttcaccc gggtcttggc aaaggcggag aagctccagt
      601 agccgaagcc cagcctgcgc cgcacgcggt tgatcatggt gttggacgcc agcagcgccc
      661 ggtaggccca gtcgcccagc agcgccagcc acctggcgtg ctgcaccacc gcgtcgaagt
      721 cgtcgccatg ggtcaccagg aagcggcggc cgtcggcggt ctggtggatc gcgtccctgg
      781 ccaccaccac gcccccgaaa tggacgccgc agaagtcgcg gatcacctca tcgtggttgc
      841 cgggcacata gatcaccgag acacccttgc gggccatgcg caggatcttc tgcaccacgt
      901 cattgtgcga ctgcggccag taccagccgg acttcatctt ccagccgtca acgatgtcgc
      961 ccaccaggta gagcgtctcg cattccatgt ggcggatgaa gtcgagcaac agctccgcct
     1021 ggcatccccg cgtgcccaga tggacgtcgg aaatgaagac gctgcggtag ctgcggatgg
     1081 cggcttcggt caatcgggcc cccgttcgcc cagtttccag gcactgcctg gcccgattcc
     1141 atgtcggttt tgcgaaggtc cgccctcgtg ctggcgcgcg ggcggacctt gctgctagaa
     1201 agcgcctaga gcagaccctc cccaggtcgc ccaattcagt ggtccagatg gacgcccata
     1261 cctatgccgg caaggcgacg ccgaagtcgc tgcggacccg cgcgcgcatt ctcaacgcgg
     1321 cgatgcggct gttcgccgag ctcggctatc acgaggccac caatccgcgg atcgcccagg
     1381 ccgccagcct gacgcgcggg gccatgctct accatttcgc ctcccgcgag gagctggtgg
     1441 aggccgccgt ccagcatatc gaactcgccc gcgcggcgct cttcgagtcc gccgcccagg
     1501 cctcggcggc gccgggccag gacgcctcgg aagccgccat cgacgcctac tgggccctgc
     1561 tgcacgagac gccgttcgtg gccttcgccg agctggagtc cgcggcccgc accgacccga
     1621 tgctgcgcac ccgcctggcc accgcacaga ccgccttcga ccgggcccag gtgggcgatc
     1681 ggttcggggc gctcgcccag gccggcgccg accccaggtt ccagaccagc cgcgacctcg
     1741 gccgcttcct cctggaaggc gtcgcgcgcg gcgccatgac ctatgacgag ccggcgcggc
     1801 gccagcgcct gctggcggtg gtcaagcgcg ccgtgcgcat gctcaaccgc aagggcggcg
     1861 tccaggacct ctgggtggac taagatcatc cc
//
LOCUS       DATAJL010000251         9876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42827,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000251 DATAJL010000000
VERSION     DATAJL010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9876
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42827"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            178..300
                     /locus_tag="VHN39_04800"
     CDS             178..300
                     /locus_tag="VHN39_04800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815684.1"
                     /translation="MKTYQGTMTPARRDLSDPRSSGKPIAAPRTPVLNDRRSTR"
     gene            325..429
                     /locus_tag="VHN39_04805"
     CDS             325..429
                     /locus_tag="VHN39_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815685.1"
                     /translation="MAKGQKKSNKETRKPKQPKAKPPESISLSTNQKR"
     gene            526..2649
                     /locus_tag="VHN39_04810"
     CDS             526..2649
                     /locus_tag="VHN39_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent dehydrogenase, methanol/ethanol
                     family"
                     /protein_id="HEX2815686.1"
                     /translation="MRIIKLGLALALALTVAACQKPGAGNVDGARIAAADSNNEWVSY
                     GKGYSEQRFSPLDKVSPANVGQLGLAWYAQFDTDRGQEATPLMVDGVLYTTTAWSKVY
                     AFDAATGKQIWAYDPKVDGAKGFDACCDVVNRGVAVWKGRVYVGTMDARLIALDAKDG
                     HVVWQAQVADPKKPFTITQAPRVVKDKVLIGESGAEYGVRGFLSAYDAATGKKLWRFY
                     TLPNPTGAPDGEPSDKVLKEKANATWPEGAWKIVGGGGTVWDAIVYDPQLNLIYFGVD
                     NGTPWDQEQRSGGKGDNLFLSSIVAINADTGEYVWHYQVNPGESWDYSAVQPMILADL
                     TIDGQVKKVLMQAPKNGFFYVLDRTNGKLLSAKNYVPVTWATGIDMKTGRPIETPEAR
                     YKDKLDLQQPGALGAHNWHPMSYSPKTGLVYIPAQSDPFPYQGVKDFSYKAGGWNLGV
                     NLLAGAAPMTADQAKAVAASYKGFLIAWDPIKQKAAWAIPHPYFWNAGVLSTGGGLVF
                     QGAAEGAFYAYDATNGKQLWSYQTGNGVIAAPMTYELNGEQYIALMVGSGGGGQISYS
                     ALMPQRPRLPGRLLVFKLGATAKAPDYVLPAQPQIDLKGVTTTGDKVHGYVVFNNNCQ
                     FCHGANAQGSWLPDLKRSPMITTPADFNSVVLQGVKAHNGMVSFARFLSAKDVEDVRS
                     FLISQGRGEPLPSPATVAAAAGGAK"
     gene            complement(2651..3871)
                     /gene="rocD"
                     /locus_tag="VHN39_04815"
     CDS             complement(2651..3871)
                     /gene="rocD"
                     /locus_tag="VHN39_04815"
                     /EC_number="2.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004587 - ornithine aminotransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HEX2815687.1"
                     /translation="MNDIALQRSLTADLIALEGLYGAKNYKPLDVVLTRGEGVHVWDV
                     EGNRYLDCLSAYSAVNQGHCHPKILEAMVAQASRLTLTSRAFRNDQLAPFYEELCALT
                     GSHKALPMNSGAEAVESAIKVARKWGYEVKGVPEGQAEIIVAADNFHGRTVAIVGFST
                     DPQSRGGFGPFAPGFKVVPYGDAAALEAAIGPNTVAFLVEPIQGEAGVIIPPAGYLKR
                     ARELCTEHKVILILDEIQTGLGRTGKLLAEEHEGIEADLTLIGKALSGGFYPVSAVLS
                     NCEVMDVLHPGEHGSTFGGNPLACAVARAALRVLTEEGMVENAARVGDRLQASLASIR
                     ADSVKEVRGRGLMIAVELHAEAGGARRVCEALQARGLLAKETHEHTIRIAPPLILTDA
                     QADWIAEQFAAVLR"
     gene            complement(3883..4755)
                     /locus_tag="VHN39_04820"
     CDS             complement(3883..4755)
                     /locus_tag="VHN39_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase-related protein"
                     /protein_id="HEX2815688.1"
                     /translation="MDPRPLFLMTDPSCFDVCYQINPWMRPTAWSPASLAAAQAASAQ
                     LRAALQTAGARVETIGAVRGLPDLVFPANAAVVLDGKVLLARFRHPERQGEEAIFRSV
                     FARLQARGLVDEVVDLPDGVLHEGAGDCIWDADRGHFWAGFGPRSTRSSIAAIRRTFG
                     REVVALELASDRFYHLDTCFCPLAGGQVLYYPDAFTPEAQATIRDRVPEAQRIEASAE
                     EAEAFCVNAVNLDARLIMARAPASLRAKLQAHGYRLTEVDLDPFILSGGAAYCMTLRL
                     DRTSQPHPAILAAE"
     gene            4875..5303
                     /locus_tag="VHN39_04825"
     CDS             4875..5303
                     /locus_tag="VHN39_04825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2815689.1"
                     /translation="MLDDLDRRLLALLRADSRDPVASLAAKLKVSRGTVQNRIAKMVG
                     TSGAIQAFTVRTRPEMEASRVRAIMTIAIEGERSAAVVKALRGFPEVDKVHTTNGRWD
                     LIAELDTETLAAFSQTLDQIRLIDGIASTETSILLATQKM"
     gene            complement(5340..6101)
                     /locus_tag="VHN39_04830"
     CDS             complement(5340..6101)
                     /locus_tag="VHN39_04830"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815690.1"
                     /translation="MTGASRGVGRGVVLGLVEAGFRVFATGRSIASADLPDPVLRLPC
                     DHLRDDQTAVVFDAIEAAGGGLDVLVNNAWGGYEGMVEDGEFTWAAPYWRQPMRRWTS
                     MMDAGVRAAFVCSAHAARIMTPARRGLIVNISAWAAQRRLGNAIYGIAKAATDKMTAD
                     LSLELTPHEVAVVSLYPGLVRTEAVLEAAAAGAFDLARSESPQFIGRVVAALHADSNT
                     LSRTGKVLVAAAVASELGVTDVDGSQPPILTLSDI"
     gene            6201..7991
                     /locus_tag="VHN39_04835"
     CDS             6201..7991
                     /locus_tag="VHN39_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEX2815691.1"
                     /translation="MNAPFKTDALPQWNLGDLYAGRDDPKIETDLAQAKADNDALVAL
                     KGRFTASRRDARLLGELLDNGIKLYEAATNGLWGVGAYAGLSASIARNDPAWSKFEGD
                     LRARSAQIAADSLFFTLELNELDDNEIEAAFRAHKPAARWRPWIRRVRLSRPHELSPD
                     LERMLIDRGPAVANWSRLSEETLAALTAKVGRESLSLSQVLNRLSDPDGARRKQAATG
                     LAKALAERTPTLALCFNTLAFEKQVEDRWRKYPTPAASRHIANEVHADAVAALEAAVV
                     EAYEPVSHRYYRLKAKAMGRDVLDQWDRNAPLDTAQPRTYGWDEAKGMVLESFSALAP
                     KFADTAQIFFTHPWIDARPRPGKQSGAYAHPVTANRHPYVFMNYMGERRDVLTLAHEL
                     GHAVHQTLCAPLGTLLADTPLTLAETASIFGEGLVFERLLANATKAERKGLLAGKIED
                     GINTVVRQIAFHRFETRFHAARLEGEVSHEEIGKIWMACMGESLGPAIKLNKGYEHYW
                     AYVSHFVHAPFYVYAYAFGDLLVRGLMEKRREDPASFAPLYEDLLAAGGTRTYVEALA
                     PFGLNPREKAFWAAGMKQMERLVDEFEALV"
     gene            8084..8422
                     /locus_tag="VHN39_04840"
     CDS             8084..8422
                     /locus_tag="VHN39_04840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815692.1"
                     /translation="MLVALAMSAVLSTQGGPCRTVHGRLSLWNGAPAFRIWIVGTHRV
                     LGVPQGDRTFAEWPAPLQTLLAAREAGGEWDTAIWGDFKVCPLTRERPGWMQQVRLVE
                     ASHLTVRPRP"
     gene            complement(8423..8635)
                     /locus_tag="VHN39_04845"
     CDS             complement(8423..8635)
                     /locus_tag="VHN39_04845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815693.1"
                     /translation="MTSFLYGLALVALLTAPAVWAVRFAKRQRGAAVLLTGLLLMFGM
                     DTMITPPPPPQIELVQKQAGDDEPKV"
     gene            8844..>9876
                     /locus_tag="VHN39_04850"
     CDS             8844..>9876
                     /locus_tag="VHN39_04850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815694.1"
                     /translation="MDGLCRSSLALAGVLLWIGALSWSTPASAVPAFAQQTGQPCSKC
                     HVGAFGPQLKPYGRDFKLFGYVSGDGANKLPPIAVVAITSFTHTQAAQGEAPEHFARN
                     DNFAADEVSLFYAGKLAAGAGAFIEVSYSGVDRTFTIDNIDIKRAFHFDIGDKDLVVG
                     LDLNDRPTVQDLWNSTPAWGFPYNASGLAPTPAASALIDGTLDQRVLGLGAYAMWNSL
                     IYAEVTAYNPVENRTLTRLGVASPAGTDVYDGVLPYWRVALQHDFGDDYAEVGGYGIS
                     GARFPGGDRSAGTDRLTDTALDATYQHTGNPRRFLSAHATWIHEDERLDASRVLAGTR
                     GSDHLDTMRA"
BASE COUNT         1631 a         3346 c         3452 g         1447 t
ORIGIN      
        1 ccaccgacct ggacgtcgcg gaggacgaga tcgcccggcg ggtcgaggcc ttcgcgagcg
       61 gctgaaagaa accgggtggg ccgcggcgcc tgcgtgctac aatttgcgct cacccaagac
      121 gcgccctgcc cgccgcaacc ttcggcggct ccgcccgccg gaccaaggac gcacaccatg
      181 aagacctatc agggcaccat gactccggcc cggcgcgatc tctccgatcc ccgctcgtcg
      241 ggcaagccga tcgccgcgcc gcgcacgccg gtgctcaacg accgccgcag cactcgctga
      301 tctgacaacc gaaaggagcc cgccatggcc aagggtcaaa agaagtccaa caaggaaacg
      361 cgcaagccca agcagccgaa ggccaagcct ccggaatcga tctcgctgag caccaaccag
      421 aagcgctgat cggcgtcgct tgacgtcgcg gaccgcttgc ccgcgcgcct agtccgagca
      481 tagtgccccc aaggccgagg ctacggccat tgggagaggg cgaccatgag gatcatcaag
      541 ctcggcctgg cgctggcgct ggcgctcacc gtggcggcct gtcagaagcc cggggccggc
      601 aacgtcgatg gcgcgcggat cgccgccgcc gactccaaca atgagtgggt ttcctacggc
      661 aagggctatt ccgagcagcg gttcagtccg ctggacaagg tctcgccggc caacgtcggc
      721 cagctcggcc tggcctggta cgcccagttc gacaccgacc ggggccagga agcgacgccg
      781 ctaatggtcg acggggtgct ctacaccacc accgcctggt caaaggtcta tgcgttcgac
      841 gcggcgaccg gcaaacagat ctgggcctac gatcccaagg tcgacggcgc caagggcttc
      901 gacgcctgct gcgacgtggt caaccgcggc gtcgcggtct ggaagggccg cgtctacgtc
      961 ggcaccatgg atgcgcgcct gatcgcgctc gacgccaagg acggccacgt cgtctggcag
     1021 gcccaggtcg ccgatccgaa gaagcccttc acgatcaccc aggctccgcg cgtggtgaag
     1081 gacaaggtgc tgatcggcga gtccggcgcg gaatatggcg tgcgcggctt tctgtcggct
     1141 tatgacgcgg ccacgggcaa gaagctctgg cgcttctaca ccctgccgaa ccccaccggc
     1201 gccccggacg gcgagccctc cgacaaggtg ctgaaggaga aagccaacgc cacctggccg
     1261 gaaggcgcct ggaagatcgt cggcggcggc ggcaccgtct gggacgccat cgtctacgac
     1321 ccacaactga acctgatcta cttcggcgtc gacaacggca cgccctggga ccaggagcag
     1381 cggtcgggcg gcaagggaga caacctcttc ctgtcgtcca tcgtggcgat caacgccgac
     1441 accggcgagt acgtctggca ctaccaggtg aaccccggcg aaagctggga ctattcggcc
     1501 gtgcagccga tgattctggc ggacctgacc atcgacggtc aggtcaagaa ggtgctgatg
     1561 caggcgccga agaacggctt cttctatgtg ctcgaccgca ccaacgggaa gctgttgtcg
     1621 gccaagaact atgtgccggt gacctgggcg acgggcatcg acatgaagac cggccgaccg
     1681 atcgaaacgc ccgaggcgcg ctacaaggac aagctggacc tgcagcaacc cggcgcgctc
     1741 ggcgcccaca actggcaccc gatgtcctac agcccgaaga ccgggctcgt gtacatcccg
     1801 gcccagtccg atccgttccc ctaccagggc gtcaaggact tctcctataa ggccggcggc
     1861 tggaacctgg gggtcaatct cctggccggg gccgcgccga tgacggcgga tcaggccaag
     1921 gccgtggcgg ccagctacaa gggcttcctg atcgcctggg acccgatcaa gcagaaggcg
     1981 gcctgggcga tcccgcaccc ctatttctgg aacgccggcg tgctgtcgac cggcggcggc
     2041 ctcgtcttcc agggcgcggc ggagggagcg ttctacgcct acgacgcgac gaacgggaag
     2101 cagctgtggt cgtaccagac cggcaacggc gtgatcgccg cgccgatgac ctatgagctg
     2161 aacggcgagc agtacatcgc cctgatggtg ggctcgggcg gcggcggcca gatctcgtac
     2221 tcggcgctga tgccccagcg gccgcgcctg cccggccggc tcctggtgtt caagctgggc
     2281 gcgacggcca aggcgccgga ctatgtcctg ccggcccagc cgcagatcga cctgaagggc
     2341 gtgacgacga cgggcgacaa ggtccacggc tatgtggtgt tcaacaacaa ctgccagttc
     2401 tgccacgggg ccaacgccca gggctcctgg ctgccggacc tgaaacgctc gccgatgatc
     2461 accacgcccg cggatttcaa ctccgtggtg ctgcagggtg tgaaggccca caacggcatg
     2521 gtcagcttcg ccaggttcct ctccgccaag gacgtggagg atgtgcggtc cttcctgatc
     2581 agccagggcc ggggcgagcc gctgccgagc ccggcgacgg tcgcggcggc ggccggcggg
     2641 gcgaagtagc ctaccgcagg accgccgcga actgctcggc gatccagtcg gcctgggcgt
     2701 cggtgaggat cagcggcggg gcgatgcgga tggtgtgctc gtgggtttcc ttggcgagga
     2761 ggccccgggc ctgcagggcc tcgcaaaccc ggcgggcgcc gccggcttcg gcgtgcagct
     2821 ctacggcgat catcaggccg cggccgcgga cctccttgac gctgtcggcg cggatcgagg
     2881 ccaggctggc ctgcagccgg tcaccgaccc gcgcggcgtt ttcgaccatg ccttcttcgg
     2941 tgagcacacg cagggccgcg cgggccacgg cgcaggccag cggattgccg ccgaaggtcg
     3001 agccgtgttc gcccgggtgc agcacgtcca tcacctcgca gttcgagagc accgcggaga
     3061 ccggatagaa gccgccggag agcgccttgc cgatcagggt caggtcagcc tcgatcccct
     3121 cgtgctcttc ggccagcagc ttgccggtgc ggcccaggcc ggtctggatc tcgtcgagga
     3181 tcaggatgac cttgtgctcg gtgcagagtt cgcgggcccg cttcaggtag ccggcgggcg
     3241 ggatgatgac gccggcctcg ccctggatcg gctcgaccag gaaggccacg gtgttggggc
     3301 cgatggcggc ctccagcgcg gcggcgtcgc cgtagggcac gaccttgaac cccggtgcga
     3361 aggggccgaa gcccccgcgc gactgcgggt ccgtggagaa gccgacgatg gccaccgtgc
     3421 ggccatggaa attgtcggcg gcgacgatga tctccgcctg gccctcgggg acgcccttga
     3481 cctcatagcc ccacttgcgg gcgaccttga tggcgctctc cacggcctcg gcgccggagt
     3541 tcatcggcag cgccttgtgg ctgccggtca gcgcgcagag ctcctcgtag aagggggcga
     3601 gctggtcgtt gcggaacgcg cggctggtca gtgtgaggcg cgaggcctgg gcgaccatgg
     3661 cctccaggat cttcgggtgg cagtggccct ggttcaccgc cgaataggct gagaggcagt
     3721 cgaggtagcg attgccctcc acgtcccaga catggacgcc ttcgccccgg gtcaggacca
     3781 cgtccagggg cttgtagttc ttcgcgccat agaggccctc aagggcgatc aggtcggcgg
     3841 tcaggctgcg ttgcagggcg atgtcgttca tggctcaaga cctcattcgg cggcgaggat
     3901 ggcggggtgg ggttggctgg tccggtccag gcgcagcgtc atgcagtagg ccgcgccgcc
     3961 agagaggatg aaggggtcga ggtcgacctc ggtcaggcgg tagccgtggg cctgcagctt
     4021 cgcgcggagc gaggccgggg cgcgggccat gatcagccgg gcgtcgaggt tcaccgcatt
     4081 gacgcagaag gcctcggcct cctcggcgct ggcctcgatg cgctgggctt ccggcacgcg
     4141 gtcgcggatc gtggcctgag cttcgggggt gaaggcgtcg gggtaataga gcacctggcc
     4201 gccggccagc gggcagaagc aggtgtccag gtggtagaac cggtcggacg ccagctcgag
     4261 ggccacgact tcgcggccga aggtccggcg gatcgcggcg atcgagctcc tggtcgatcg
     4321 cggcccgaag cccgcccaga aatgcccgcg atcggcgtcc cagatgcagt cgccggcgcc
     4381 ctcgtgcagg acgccgtcgg gcaggtcgac cacctcgtcc accaggccgc gggcctgcag
     4441 ccgggcgaag accgagcgga agatcgcctc ctcgccctgg cgctccggat ggcggaagcg
     4501 ggccagcagc accttgccgt ccagcaccac ggcggcgttg gccgggaaca ccaggtcggg
     4561 caggccgcgc accgcgccga tggtttcgac ccgggcgccg gccgtctgca gggccgcgcg
     4621 aagctgggcc gaggcggcct gcgcggcggc cagcgaggcg gggctccagg cggtcggccg
     4681 catccaggga ttgatctggt agcagacgtc gaaacagctg gggtcggtca tcaggaagag
     4741 cgggcgcggg tccatctggc gatccttcgt ggcggcgtgg cccccaggat cgcgcgccgg
     4801 ggcgctagcg aatagcgcac aacatgctac atttcgtgcg atctactgac gatctgatca
     4861 ataggattgg cgatatgctg gatgacctcg accgcaggct gctcgccctg ctgcgcgccg
     4921 attcgcggga tccggtggcg tcgttggccg ccaagctgaa ggtctcgcgc ggcacggtgc
     4981 agaaccgcat cgccaagatg gtggggacct cgggcgccat ccaggccttc accgtgcgca
     5041 cccgcccgga gatggaggcc agccgcgtgc gggcgatcat gaccatcgcc atcgagggcg
     5101 agcgatcggc cgcggtggtc aaggcgctgc gcggtttccc ggaggtggac aaggtgcaca
     5161 ccaccaacgg ccgctgggac ctgatcgccg aactcgacac cgagacgctc gccgccttca
     5221 gccagacgct ggaccagatc cgcctgatcg acggcatcgc gtccaccgaa acctcgatcc
     5281 tgctggccac gcagaagatg tgagggggga agctcacgcc gcagcctcgg cgccgggcgt
     5341 cagatgtccg agagcgtgag gatcggtggc tggctgccgt ccacgtcggt gacgcccagt
     5401 tcggacgcga cggcggcggc gaccagcacc ttgcccgtgc gggagagggt gttggaatcc
     5461 gcatggagcg cggcgaccac gcggccgatg aactgggggc tctcgctccg ggcgaggtcg
     5521 aaggcgcccg ccgccgcggc ctcgagcacc gcctcggtcc gcacgaggcc cggatagagc
     5581 gaaaccactg cgacctcgtg gggcgtcagc tccaggctca ggtcggcggt catcttgtcc
     5641 gtcgcggcct tggcgatccc gtagatggcg ttgcccagcc ggcgctgcgc ggcccaggcg
     5701 ctgatgttga cgatcaggcc gcggcgagcc ggcgtcatga tcctggccgc atgggctgag
     5761 cagacgaagg cggccctaac gcctgcgtcc atcatgctgg tccagcggcg catgggctgg
     5821 cgccaatagg gtgcggccca ggtgaactcg ccatcctcga ccatcccctc gtatccgccc
     5881 caggcattgt tcacgaggac gtcgaggccg ccgccggccg cctcaatggc gtcgaacacc
     5941 accgccgtct ggtcgtcacg caggtgatcg cagggaaggc gcagaaccgg gtccggcagg
     6001 tccgccgagg caatcgagcg tccagtggcg aagacccgaa agccggcctc cacgaggccc
     6061 agaacgacgc cgcgcccgac accccggctg gcgcctgtca ccagggctgt tcttgattcg
     6121 ttcatggtga tagctaaacc ctatttcccg ggtgcagcca agcctcccgt ttgccgggtg
     6181 gatggactat gtgaagcccc atgaacgcgc ccttcaagac cgacgccctg ccgcagtgga
     6241 atctcggcga cctctatgcc gggcgggatg acccgaagat cgagacggac ctggcccagg
     6301 ccaaggcaga caacgacgcc ctggtggcgc tcaagggccg gttcacggcc agccggcgtg
     6361 atgcgcggct gctgggcgag ctcttggaca atggcatcaa gctctatgag gcggcgacca
     6421 atgggctgtg gggcgtgggc gcctatgcgg ggctgtcggc gtccatcgcg cgcaacgacc
     6481 cggcctggtc gaagttcgaa ggcgacctca gggcccgctc cgcccagatc gccgccgaca
     6541 gcctgttctt cacgctggaa ctgaacgaac tcgacgacaa cgagatcgag gcggcgttcc
     6601 gggcgcacaa gccggcggcg cgctggcggc cctggatccg ccgggtgcgc ctgtcgcggc
     6661 cgcatgaact cagccccgac ctggagcgga tgctgatcga ccggggacct gcggtcgcca
     6721 actggagccg gctgtcggaa gagacgctgg ccgcgctcac cgccaaggtg gggcgcgaga
     6781 gcctgagcct gtcgcaggtg ctgaaccggc tctccgaccc ggatggcgcg cggcgcaagc
     6841 aggcggccac gggcctcgcc aaggcgctgg cggagcgcac gccgactctg gcgctctgct
     6901 tcaacacgct cgccttcgag aaacaggtgg aggaccgctg gcggaaatat cccacgcccg
     6961 ccgcctcacg ccacatcgcc aacgaggtcc acgccgacgc tgtggcggcc ctggaggccg
     7021 cagtggtcga ggcctatgag ccggtcagcc accgctatta tcggctgaag gccaaggcca
     7081 tgggccgcga tgtgctggac cagtgggaca ggaacgcccc gctggatacc gcccagcccc
     7141 gcacctatgg ctgggacgag gccaagggga tggtgctgga gagcttctcg gcgctggcgc
     7201 ccaagttcgc cgacacggcc cagatcttct tcacccaccc ctggatcgac gccaggcccc
     7261 ggcccggcaa gcagtccggc gcctatgcgc acccggtgac cgccaaccgg cacccctatg
     7321 tcttcatgaa ctacatgggc gagcggcggg acgtgctgac gctcgcccac gaactgggcc
     7381 acgccgtcca ccagacgctg tgcgcgccgc tgggcaccct gctcgccgac acgccgctga
     7441 cgctggccga gaccgcctcg atcttcggcg aggggctggt gttcgagcgc ctgctggcca
     7501 acgccaccaa ggccgagcgc aagggcctgc tcgccggcaa gatcgaggac gggatcaaca
     7561 cggtggtccg ccagatcgcc ttccaccgct tcgagacgcg gttccacgcg gcgcgcctgg
     7621 aaggcgaggt cagccacgag gagatcggga agatctggat ggcctgcatg ggcgagagcc
     7681 tgggaccggc catcaagctc aacaagggct acgagcacta ctgggcctac gtcagccact
     7741 tcgtccacgc gccgttctac gtctacgcct acgccttcgg ggacctgctg gtgcgcggcc
     7801 tgatggagaa gcggcgggaa gacccagcgt cgttcgcgcc gctctacgaa gacctgctgg
     7861 cggcgggcgg cacccggacc tacgtcgagg cgctggcgcc gttcgggctg aacccgcggg
     7921 agaaggcctt ctgggcggcc gggatgaagc agatggaacg gctggtggac gagttcgagg
     7981 cgctggtttg acgccaactc ctcaatcgct cgtcatccca cggtcagccg caggctgatc
     8041 cgggggaccc aagccggacg tctcgttcaa aggatgagcc ccaatgctcg tcgcgctcgc
     8101 catgtccgcc gtcctgtcga cgcagggcgg cccttgccgg acggtgcatg ggcgcctgag
     8161 tctctggaac ggagcgccgg cgttccggat ctggatcgtc ggaacccatc gggttctggg
     8221 cgtgccgcag ggcgaccgga cgttcgcgga atggcccgcg ccgctgcaaa ccttgctggc
     8281 tgcgcgcgag gccggcggcg agtgggacac cgccatctgg ggcgacttca aggtctgccc
     8341 gctgacccgt gagcgtccgg gctggatgca gcaggtgcgg ctcgtcgagg cctcgcatct
     8401 gacggtgcgg ccgcggccct gatcacacct tcggctcgtc gtcccccgcc tgcttctgca
     8461 ccagctcgat ctgtggcggg ggtggcggcg tgatcatggt gtccatgccg aacatcagca
     8521 ggaggccggt cagaagcacc gcggccccgc gctgacgctt ggcgaaccgc acggcccaga
     8581 ccgccggggc ggtcagcaag gccaccaggg cgaggccgta gaggaacgag gtcaagcggc
     8641 ggtccgtcct gggaagcgtc acctcatatg ggggcggcgt gacggatgcg aagctttggg
     8701 acctgggcgg cgatgagcag ccggaacaaa ctcatcatgc gcgtgcgctg acagatctgt
     8761 ttacctccca tatggcaaac tcgcgttccg gggtttgaac tgaacgcgga gcagacatgg
     8821 gcggcggggt tttggcgcgg accttggacg ggctctgccg ttcgtccctg gctctggcgg
     8881 gcgtgctgct gtggatcggc gcgcttagct ggtcgacgcc ggcgtccgcc gtaccggctt
     8941 tcgcccagca gaccggccag ccctgttcga aatgccacgt gggcgcgttc ggaccgcagc
     9001 tgaagcccta tgggcgcgac ttcaagctgt tcggctacgt cagcggcgac ggcgccaaca
     9061 agctgccgcc gatcgccgtg gtcgccatca cctcattcac ccatacccag gccgcccagg
     9121 gcgaggcgcc ggagcatttc gcgcgcaacg acaatttcgc ggcggacgag gtgagcctgt
     9181 tctacgccgg caagctggcg gccggcgccg gggccttcat cgaggtcagc tatagcggcg
     9241 tggaccggac cttcaccatc gacaacatcg acatcaagcg cgccttccac ttcgacatcg
     9301 gcgacaagga cctggtggtc ggcctcgacc tcaacgatcg gccgacggtc caggacctgt
     9361 ggaattcgac gcccgcctgg ggcttcccgt acaacgcctc tggcctcgcg ccgacgccgg
     9421 ccgccagcgc cctgatcgac gggacgctgg accagcgggt gctgggcctg ggcgcctacg
     9481 ccatgtggaa cagcctcatc tatgcggaag tcaccgccta caacccggtg gagaaccgca
     9541 ccctgacccg gctgggcgtc gcctcgccgg ccgggacgga cgtctacgac ggggtcctgc
     9601 cctactggcg cgtggccctg cagcacgatt tcggcgacga ctatgcggag gtcggcggct
     9661 acggcatctc cggcgcgcgc ttcccgggcg gggaccggtc cgcagggacc gaccgcctga
     9721 ccgacacggc gctcgacgcc acctatcagc ataccggcaa tccccggcgc ttcctgtcgg
     9781 cccacgccac ctggatccac gaggacgaga ggctggacgc cagccgggtg ctggcgggaa
     9841 cccgcgggtc cgaccacctg gatacgatgc gggcgg
//
LOCUS       DATAJL010000252         5016 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42841,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000252 DATAJL010000000
VERSION     DATAJL010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5016
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42841"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..374
                     /locus_tag="VHN39_04855"
     CDS             <1..374
                     /locus_tag="VHN39_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA lyase"
                     /protein_id="HEX2815695.1"
                     /translation="DTIGVADPWLVRKRVEAAKTAAPGTPLRMHFHDTRNTGLANAFA
                     SVEAGVDVLDASCGGLGGCPFAPDATGNIGTEDLVYMLERAGFETGYDLPGLISTAKW
                     MAGLLGKPPAASVSRAGLFPA"
     gene            complement(381..1319)
                     /locus_tag="VHN39_04860"
     CDS             complement(381..1319)
                     /locus_tag="VHN39_04860"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2815696.1"
                     /translation="MNGIAAPIVALESVELSDVLGAHPSVSVVMVVYMTGEALHESVA
                     RALSDPSVSELVIVDNGSTSADASELRALAQGDGRVVLLAGHGNVGFARGANLGARKA
                     KGEILVFLNPDAFLQPGCIAELAREIVGRPVPCIVGGRVLNADLTEQRGGRRGDITLV
                     SALLSLSRLAERVPAWRHYEVHWEGEASPDGPAPVPTISGACFCMRREDFDFVKGFDE
                     KYFLHVEDVDLCWRVRRAGGLVLFHPRAEVIHLGHTSLTSPIRVEFHKGVGLARYFRK
                     RAVGLTQSVTAWVLSPIVVVAAIARPLMWRFRGRAG"
     gene            complement(1330..3294)
                     /gene="thrS"
                     /locus_tag="VHN39_04865"
     CDS             complement(1330..3294)
                     /gene="thrS"
                     /locus_tag="VHN39_04865"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX2815697.1"
                     /translation="MIDLIFPDGSKRPFDDGVTGKDVATSIAISLAKRAVLVKLDGEL
                     LDLDRPLPHGGKFEILTRDSPEVLETIRHDASHVMAEAVQELFPGTQVTIGPSIEDGF
                     YYDFARAEPFSLDDLATIEQRMKEIVDRDEPIKREVWSRDEAIAHFKSIGELYKAEII
                     EGIPAGEDVSVYRQGNWKDLCRGPHLPSTKAVGKAFKLTKLAGAYWRGDHRNPMLQRI
                     YGTAWANETDLEAYLHRIEEAEKRDHRKIGKAMDLFHLREEAKGMIFWHTKGWKLYRT
                     VEAYMRRKLDADGYVEVKAPQLMDRELWEKSGHWQKFAHAMFTCETEEGEVLALKPMN
                     CPGHVQIFNHGQKSYRDLPLRMAEFGACHRYEPSGALHGIFRVRAFTQDDAHIFCRED
                     QIEAESTKFVHLLESVYRDCGLELHAVKLALRPELRFGTDEVWDIAEAKLERAAKAAG
                     IAEIGMLPGEGAFYGPKLEFHLRDAIGRTWQCGTLQLDYVLPERLDAEYVAEDGSKQR
                     PVMLHRAICGSLERFLGVMIENFAGAFPLWLAPVQVVVATITSDADDFALKAAAALRA
                     KGLRVETDLRNEKINLKVREHSLAKVPVIAVVGRREAEEGKVALRRLGSDGQEILDLS
                     AAANMLALQATPPDVAANAGGVESQPSNGR"
     gene            complement(3291..3587)
                     /gene="yidD"
                     /locus_tag="VHN39_04870"
     CDS             complement(3291..3587)
                     /gene="yidD"
                     /locus_tag="VHN39_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEX2815698.1"
                     /translation="MTLYERCVRGALRAYKLTLSPLIGRQCRFVPTCSEYAADALIGH
                     GPWRGTALAARRLCRCHPWGGGSGFDPVPPPRKTPPKDTPNDSGADARKWTCET"
     gene            complement(4159..4587)
                     /locus_tag="VHN39_04875"
     CDS             complement(4159..4587)
                     /locus_tag="VHN39_04875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein"
                     /protein_id="HEX2815699.1"
                     /translation="MIDDLYSAKLLKLAANMPRAGRLAAPDASSEKVAKLCGSRVVVD
                     VTVDGDRVADFAQEVKACALGQAAASVLGSNVVGASLGELETARLQLRAMLKEGAAAP
                     DGRFSELALLAPVKDYPARHASTMLAFEAVTEAVRRATGA"
BASE COUNT          804 a         1729 c         1672 g          811 t
ORIGIN      
        1 ccgacaccat cggcgtcgcc gacccctggc tggtccgcaa acgggtcgag gccgccaaga
       61 ccgcggcgcc cggcacaccc ctgcgcatgc acttccacga cacccgcaac accggcctcg
      121 ccaacgcctt cgcatccgtc gaggccgggg tcgacgtgct ggacgccagc tgcggcggcc
      181 tgggcggctg ccccttcgcg ccggacgcca ccggcaacat cggcaccgag gacctggtct
      241 acatgctgga acgcgccggc tttgagaccg gctacgacct gccgggcctg atctccaccg
      301 cgaagtggat ggccggcctg ctcggcaagc cgccggcggc ctcggtcagc cgcgcgggat
      361 tgttcccggc gtaactcgcg tcagccggcg cggccccgga agcgccacat cagcgggcgc
      421 gcgatggcgg cgaccacgac gatcggcgac agcacccagg cggtgacgct ctgggtgagc
      481 cctaccgccc gtttgcggaa gtagcgcgcc aggcccacgc ccttgtggaa ctccacgcgg
      541 atcgggctgg tcaggctggt atggcccagg tggatcacct cggccctggg atggaacagc
      601 accaggccgc cggcgcggcg cacccgccag cagaggtcga cgtcctccac gtgcaggaag
      661 tacttctcgt cgaagccctt cacgaagtcg aagtcctcgc ggcgcatgca gaaacaggcg
      721 ccggagatgg tcggcaccgg ggcgggtccg tcgggcgagg cctcgccttc ccagtgcacc
      781 tcgtagtgac gccaggccgg cacgcgctcg gccagccggc tgagcgacaa gagcgcgctg
      841 accagggtga tgtcgccgcg ccggccgccg cgctgttcgg tgaggtcggc gttcagcacc
      901 cgcccgccga cgatgcaggg cacgggccgg ccgacgatct cgcgggccag ctcggcgatg
      961 caacccggct gcaggaaggc gtcggggttg aggaagacca ggatctcgcc cttggccttg
     1021 cgcgcaccca ggttggcgcc gcgggcgaag cccacattgc cgtggccggc caacagcacc
     1081 acgcgcccgt cgccttgcgc gagcgcgcga agctccgagg cgtcggcgct cgtcgagccg
     1141 ttgtcgacga tgaccagttc gctcaccgac gggtcgctga gcgcgcgggc cacgctctcg
     1201 tgcagcgcct cgccggtcat gtagacgacc atgacgacgg agacgctggg atgcgcgccc
     1261 aggacgtctg acagctcgac agactctaaa gcgacgatcg gtgcggcgat gccgttcatc
     1321 cagccttcct taccgaccgt tcgagggctg cgattcaacg cccccggcgt tggcggcaac
     1381 atcgggcgga gtcgcctgca aggcaagcat gttcgcggcg gccgagaggt cgagaatctc
     1441 ctgaccgtcg gacccgaggc gccgcagcgc caccttgccc tcctccgcct cgcggcggcc
     1501 caccacggcg atgaccggaa ccttggccag gctgtgctcg cggaccttca gattgatctt
     1561 ctcgtttctg agatcggttt ccacccgcaa ccccttggcc ctgagcgccg ccgccgcctt
     1621 gagggcgaag tcatcggcgt ccgaagtgat cgtggcgacc acaacctgaa caggagccaa
     1681 ccagagcggg aacgcgccgg cgaagttttc gatcatcacc cccaggaatc gctccaggga
     1741 gccgcagatc gcccggtgca gcatgaccgg gcgctgcttg gaaccgtcct cggcgacata
     1801 ttcagcgtcc agccgctccg gcagcacata gtcgagctgc agcgttccgc actgccacgt
     1861 ccgtccgatc gcgtcgcgca ggtggaactc cagcttcggg ccatagaagg cgccctcgcc
     1921 cggcagcatt ccgatctcgg cgatgccggc ggccttggcg gcgcgctcca gcttggcctc
     1981 ggcgatgtcc cagacctcgt cggtgccaaa ccgcagctcg gggcgcagcg ccagcttcac
     2041 cgcgtgcagc tccaggccgc agtcgcggta gacgctctcc aggaggtgga cgaacttcgt
     2101 ggactccgcc tcgatctggt cctcgcggca gaagatgtgc gcgtcgtcct gcgtgaaggc
     2161 ccgcacccgg aagatgccgt gcagggcgcc cgacggctca tagcggtggc aggccccgaa
     2221 ctcggccatc ctgagcggca ggtcgcgata cgacttctgg ccgtggttga agatctgcac
     2281 gtggcccggg cagttcatcg gcttgagggc caggacctcg ccctcctccg tctcgcaggt
     2341 gaacatggcg tgggcgaact tctgccagtg gcccgacttc tcccagagct cgcggtccat
     2401 gagctggggc gccttgacct ccacatagcc gtcggcgtcg agcttgcggc gcatataggc
     2461 ctcgaccgtg cgatagagct tccagccctt ggtgtgccag aagatcatcc ccttggcctc
     2521 ttcccgcaga tggaagaggt ccatggcctt gccgatcttg cggtggtcgc gcttctcggc
     2581 ctcctcgatg cggtggaggt aggcctcaag atccgtctcg ttggcccagg ccgtgccgta
     2641 gatccgctgc agcatcgggt tgcggtgatc gccccgccaa taggcgccgg ccagcttcgt
     2701 cagcttgaac gccttgccca ccgctttcgt ggacggcagg tgcggcccgc ggcagaggtc
     2761 cttccagttc ccctggcggt agacgctgac gtcctccccg gccgggatgc cttcgatgat
     2821 ctcggccttg tagagctcgc cgatcgattt gaagtgggcg atggcctcgt cgcggctcca
     2881 gacctcgcgc ttgatgggct cgtcgcggtc gacgatctcc ttcatgcgct gctcgatggt
     2941 ggccaggtcg tccaggctga acggctcggc gcgggcgaag tcgtagtaga aaccgtcctc
     3001 gatcgagggg ccgatggtca cctgcgtgcc ggggaagagt tcctgcacgg cctcggccat
     3061 gacgtggctg gcgtcgtggc ggatggtctc cagcacctcg gggctgtcac gcgtcaggat
     3121 ctcgaacttg ccgccgtgcg gcagcgggcg gtcgagatcc agtagctcgc cgtcgagctt
     3181 caccagcacc gcgcgcttgg ccagcgatat ggcgatggac gtggccacgt ccttgccggt
     3241 cacgccgtcg tcgaacggtc gcttggagcc atcggggaaa atcaggtcga tcatgtctca
     3301 caggtccact tgcgcgcatc ggcccccgag tcgtttgggg tgtccttcgg aggcgtcttg
     3361 cgcgggggcg ggaccgggtc gaaacccgaa ccgccgcccc agggatgaca acggcacagc
     3421 ctgcgagcgg cgagagcagt cccgcgccac gggccgtggc cgatcagggc gtcggcggcg
     3481 tattccgagc aggtcggaac gaaccggcac tgccgcccga tcagcggcga aagcgtcagc
     3541 ttgtaggcgc ggagcgcgcc cctgacgcag cgttcgtaga gggtcatgcc ggctacggtg
     3601 atctctgagg tgggcccagc gattacgctg cgcctagcgg tggatcaagc cgcgccggcg
     3661 ggggtagttc gtgcagctgc agcctcgaac gcgcgaggcg cggaggcttg ggcggcgcgg
     3721 aggtgaagag ccggcgtcaa catgggcggc gcgaatagca cgaacgggcg cgaaacgaaa
     3781 ccttgggccg cgctcggtcg tgtcctaatt tgaatgggtg cggacctgag tcctattttg
     3841 cgtggggtac gaatagcgac acccccaaga ggactgcacc gaccacaacc agaagagccc
     3901 cggcctggac gctcctatca ctgccctcgg tacggaaccg tgtgtagatg cctaccaaag
     3961 cgagcccggc aacaatcaga actgttccca tgatcgcggg taaatcgttg atcgtcattg
     4021 catcctcctc gcttcccact attgccgctc ttacggcctc acgcggccct gtgatgcctc
     4081 ccacatgcag tacggcgaag aaccgccggt tgtcgcttcc ctcaatcaga gacttcaaat
     4141 taggacacta tccggcgctc aggcgccggt ggcgcggcgc acggcctcgg tgacggcctc
     4201 gaaggccagc atggtcgagg cgtggcgcgc gggatagtcc tttaccggcg ccagcagggc
     4261 gagctcggaa aagcgcccgt ccggggccgc agcgccctcc ttcagcatgg cccgaagctg
     4321 cagccgcgcg gtctccagct cgccgaggct cgcgcccacg acgttcgatc cgagcacgga
     4381 agccgccgcc tggccgagcg cgcaggcctt cacttcctgg gcgaagtcgg ccacccggtc
     4441 accgtcgacg gtgacgtcca ccaccacccg gctgccacac agcttggcga ccttctcaga
     4501 gctggcgtcg ggcgcggcga ggcggccggc gcggggcatg ttggccgcca gcttcagcag
     4561 tttcgccgag tagaggtcgt cgatcatggt ccctagatcg gggcccgccg cgtgcaagtc
     4621 aaatggcgcg cgccgccgac tgttgcagac tgaaacccgg ccacctcttt gtggccataa
     4681 ggccgcgcga aaggcatttg cgctttaggt gctataatat aacaacacgc ttccaacgcg
     4741 gcgggtgaga tcatgaccag aaccgtcgcc ggcatggagc cgccagctta agtgctcgtc
     4801 agcgatgaat ccccttccct gaccaggctg ggccgcggcg caattcgcgc gctggaggct
     4861 gaaggatcac gcccgccgcg catctggtcg ccgtcgaggg gcaggtctcc gtggctcgcc
     4921 gtcctggcta ctctcctggt cagcgcctgc gcggcgggac cggacttcaa aaagcccgcg
     4981 ccgccttcgg tcagcgccta tgtcgcgcac acgcca
//
LOCUS       DATAJL010000253         1646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_29814,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000253 DATAJL010000000
VERSION     DATAJL010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_29814"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VHN39_04880"
     CDS             complement(<1..207)
                     /locus_tag="VHN39_04880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEX2815700.1"
                     /translation="MPRVLIADSLSPAAIDIFKQRGVDADVKTGLSKEDLIKIIGDYD
                     GLVVRSDTKPNKDVIAAATNLKVIG"
     gene            complement(289..1470)
                     /locus_tag="VHN39_04885"
     CDS             complement(289..1470)
                     /locus_tag="VHN39_04885"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEX2815701.1"
                     /translation="MTTLAKPAMRPARPEFSSGPCAKRPGWSPENLQNAVLGRSHRSK
                     PGKARLKEAIDRTREVLEVPDDFLIGIVPGSDTGAVEMAMWSMLGARPVQLLAFESFG
                     KDWVTDVTKQLKIEAEVLDAPYGELPDLSKVRPDADLVFTWNGTTSGVRVPNADFISA
                     TREGIVICDATSAAFAQDLDWAKLDVVTFSWQKALGGEAAHGVLILSPRAVARLESYT
                     PAWPMPKLFRMTSKKDGVNKVTLDLFEGATINTPSMLAVEDAVDALKWAASIGGLSEM
                     RRRADSNLGVLESWAQKTGWVSFLAEDPAIRSNTSVCLKVIDPKITSLSEDAQADFAK
                     KLAALLEKEGVALDVGGYRDAPPGLRIWCGATVDSSDLDALTPWLDWAFAVTASELQP
                     A"
BASE COUNT          255 a          508 c          597 g          286 t
ORIGIN      
        1 gccgatgact ttcaggttcg tggccgcggc gatgacgtcc ttgttgggct tggtgtcgga
       61 gcgcacgacc aggccatcat agtcgccgat gatcttgatc aggtcttcct tggaaaggcc
      121 ggtcttcacg tcggcgtcga cgccgcgctg cttgaagatg tcgatggcgg cggggctgag
      181 gctgtctgcg atgagaacgc ggggcattgg ggatgtcctt tgaaggcgcg ccctccccgg
      241 ctcagcgggg agggtaatgt tgcgggatcg gcgcgcggcg gcgccggttc aggcgggctg
      301 aagttcggag gccgtgacgg cgaaggccca gtcgagccag ggcgtgagcg cgtcgaggtc
      361 ggagctgtcg accgtagcgc cgcaccagat ccgcaagccc ggaggggcgt cgcggtagcc
      421 gccgacgtcg agggccacgc cttccttctc caggagcgcc gccagcttct tggcgaaatc
      481 ggcctgggcg tcttcggaaa gcgaggtgat cttcgggtcg atgaccttga ggcacaccga
      541 ggtgttggag cggatcgcgg gatcttccgc caggaaggac acccaaccgg tcttctgcgc
      601 ccaggattcc aggacgccga gattgctgtc ggcgcggcgc ctcatttccg aaagaccgcc
      661 gatcgaggcg gcccacttca gcgcatcgac ggcgtcttcc acggccagca tggagggggt
      721 gttgatggtg gcgccttcga agaggtcgag ggtgaccttg ttcacgccgt ccttcttgga
      781 ggtcatgcgg aagagcttcg gcatgggcca ggccggcgtg tagctctcca gccgggcgac
      841 ggcgcgcggc gacaggatca ggaccccgtg cgcggcctcg ccgcccagcg ctttctgcca
      901 ggagaaggtc accacatcga gcttggccca gtcgaggtcc tgggcgaagg cggccgaggt
      961 ggcgtcgcag atgacgatgc cttctcgggt cgcagagatg aagtcggcgt tggggacacg
     1021 gacgcccgag gtggtgccgt tccaggtgaa caccaggtcg gcgtcgggac gcactttgct
     1081 gaggtccggc aactcgccgt agggcgcgtc gagcacttcc gcctcaatct tcagctgctt
     1141 ggtgacgtcg gtcacccagt ccttgccgaa gctttcgaag gccagcagct gaaccggccg
     1201 ggcgcccagc atcgaccaca tggccatctc cacggcgccg gtgtcggagc cggggacgat
     1261 gccgatcagg aagtcgtcgg gcacctccag cacctcgcgg gtgcggtcga tggcttcctt
     1321 cagacgcgcc ttgccgggct tcgaacggtg agaccgcccg agcacggcat tctggagatt
     1381 ttcagggctc catccgggcc gcttggcgca ggggccggat gaaaattcgg gacgcgcagg
     1441 gcgcatcgcc ggcttggcga gggtcgtcat agcaatgtct cccatcctta cagatggact
     1501 gcgccccgtt gggggggcgt ggcccgcgcg ccaaaagccc gggtttgtgc tgcggtgcaa
     1561 gaggaagttt tctcgcagcg gctacagcgg cgctaagccg cgggcgcgtc ctcggcgctc
     1621 gccaggcgca cgcgccgccg ccacgc
//
LOCUS       DATAJL010000254         3695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42848,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000254 DATAJL010000000
VERSION     DATAJL010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3695
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42848"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2380)
                     /gene="galA"
                     /locus_tag="VHN39_04890"
     CDS             complement(<1..2380)
                     /gene="galA"
                     /locus_tag="VHN39_04890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007663635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004565 - beta-galactosidase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase GalA"
                     /protein_id="HEX2815702.1"
                     /translation="MERRRFLKVAGVAAAGAALARPGATAEPVAKDATARSAWGPGER
                     LSLDLGWRFHRGDIVTSPPHSGDQTYASTKAGAAAGAASLRYDASSWRELDLPHDFVV
                     EGPFEETANVAQGYRPKGVAWYRRTLQLDPADQGKHLELQFDGIATEATVWFNGNVVA
                     HSFSGYSSLYIDVTAFARFGAELNAIAVRVDADPLEGWWYEGGGIYRHAWLVKRAPVH
                     LVTDGVYAHPRREPDGRWVLPVEATVANIGEAAAAAEVEVVLIDAAGRPVAQGRAGVS
                     IAPLERGVAHVALEVAQPALWSIETPTLYEVRTTLRLAGAVTDEAVTLCGFRTQRFDP
                     DHGFFLNDKPVKIRGVCIHQDHAGVGIALPDSIIDFRLRRLKALGCNAIRSSHNAPTR
                     ELLDAADRLGFLVMDENRLFNTSPDYMRILEWMVRRDRNHPSVILWSVFNEEPLQGRR
                     EGYEMVRRMAGLVKRLDTTRPVTAAMNSGMFSPRNVSQAVDVVGFNYQIAVYDPFHAA
                     NPGKPMTSSEDTSAVSTRGEYATDMKAHLLTSYDDEARPWGATHRAAWKAIATRPYLA
                     GGFVWTGFDYRGEPQPFEWPTVSSSFGIMDLCGFEKAAFYIHQAQWVKDRPVLHLIPH
                     WNWPGREGQPIRVVAMANTETVALMLNGKLIGEQKVDPYEMNEWKVGYAPGRLEAVGK
                     IGGKVVAHAVVETTGAPVALRLTPDRGGLAGDGRDATPVTVEALDAKGRPVPTANLPV
                     SFEISGGRIIGLGNGDANSHEPEKGDKRSLYNGLAQVIVQTEAGGAGVLSLRA"
     gene            complement(2514..>3695)
                     /gene="tuf"
                     /locus_tag="VHN39_04895"
     CDS             complement(2514..>3695)
                     /gene="tuf"
                     /locus_tag="VHN39_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEX2815703.1"
                     /translation="EKFQRNKPHCNIGTIGHVDHGKTTLTAAITFTLAKTGGAKSMSY
                     ADIDAAPEEKARGITINTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILV
                     VSAADGPMPQTREHILLARQVGVPALVVYMNKVDLVDDEELLDLVEMEVRELLSSYEF
                     PGDDIPIVKGSAKVALDGGDPVIGENSILELMTQVDAYIPQPERPIDQPFLMPVEDVF
                     SISGRGTVVTGRIEKGIVKVGEEVEIVGIREVQKTICTGVEMFRKLLDQGQAGDNVGV
                     LLRGTKREDVERGQVLCKPGSITPHTEFLAEAYILTKEEGGRHTPFFTNYRPQFYFRT
                     TDVTGIIKLKEGVEMIMPGDNAELTIELITPIAMDQGLRFAIREGGRTVGSGVVSKII
                     K"
BASE COUNT          540 a         1264 c         1248 g          643 t
ORIGIN      
        1 gcgcccgcag cgacaggacc cctgccccgc ctgcctcggt ctgcacgatc acctgggcca
       61 ggccgttgta gaggctgcgc ttgtcgccct tctccggctc atggctgttg gcgtcgccgt
      121 tgcccaggcc gatgatccgc ccgccggaga tctcgaagct gacgggcagg ttcgcggtcg
      181 gcacgggccg gcccttggcg tccagcgcct cgacggtcac cggcgtcgca tcgcgcccgt
      241 cgccggccag cccgccgcga tccggcgtca gccgcagcgc caccggggcc ccggtggtct
      301 ccacgacggc gtgggccacg accttcccgc cgatcttgcc caccgcctcc agccggccgg
      361 gcgcatatcc aaccttccat tcattcatct cgtagggatc gactttctgc tcgccgatca
      421 gcttgccatt cagcatcagg gcgaccgtct cggtgttggc catggccacg acccggatcg
      481 gctggccctc gcggccgggc cagttccagt gggggatcag gtggagcacc gggcggtctt
      541 tcacccactg agcctggtga atgtagaagg cggccttctc aaagccgcag aggtccatga
      601 ttccgaacga cgagcttacg gtcggccact cgaagggctg cggctcgccg cggtagtcga
      661 acccggtcca gacaaagccg cccgccagat agggtcgcgt ggcgatcgct ttccaggccg
      721 cccggtgcgt cgccccccag ggccgggcct cgtcgtcgta ggaggtcagc agatgggcct
      781 tcatgtcggt ggcgtattcg ccccgggtgc tcaccgccga ggtgtcctcc gaactggtca
      841 tcggtttccc gggattggcg gcgtggaacg ggtcgtagac ggcgatctga tagttgaacc
      901 ccacgacgtc gaccgcctgg gagacattcc tgggcgagaa catgccgctg ttcatcgccg
      961 ctgtgaccgg acgggtggtg tccagccgct tcaccagccc agccatgcgc cggaccatct
     1021 catagccttc gcggcggccc tgcaggggct cctcgttgaa caccgaccag aggatgacgc
     1081 tcgggtggtt gcggtcgcga cgcaccatcc attccaggat gcgcatgtag tcggggctgg
     1141 tgttgaagag ccggttctcg tccatcacca ggaagcccag ccggtcggcg gcgtcgagca
     1201 gttcgcgtgt gggtgcgttg tgcgaggagc ggatggcgtt gcagccgagc gccttcagcc
     1261 gccgcagccg gaagtcgatg atcgagtccg ggagcgcgat gccgacgccg gcgtgatcct
     1321 ggtggatgca aacgccccgg atcttcaccg gcttgtcgtt gaggaagaag ccgtgatccg
     1381 gatcgaaccg ctgggtccgg aagccgcaga gcgtcacggc ctcgtccgtc accgcgccgg
     1441 ccaggcggag cgtggtgcgc acctcataga gcgtcggcgt ctcgatggac cacagggcgg
     1501 gctgggcgac ctccagcgcc acatgcgcga caccgcgctc cagaggcgcg atggagaccc
     1561 cggcccggcc ctgcgccact ggccggccgg cggcgtcgat cagcaccacc tccacctcgg
     1621 cagcggccgc cgcctcgcca atattggcca ccgtggcctc caccggcagg acccagcggc
     1681 catctggctc gcgccgggga tgggcgtaga cgccgtcggt gaccaggtgg acgggcgcgc
     1741 gcttcaccag ccaggcgtgc cgatagatcc cgccgccctc gtaccaccag ccttccagcg
     1801 gatcggcgtc gacgcgcacg gcaatggcgt tcaactcggc tccgaaccgg gcgaaagccg
     1861 tgacgtcgat atagagcgag gaatagccgc tgaagctgtg cgctacgaca ttgccgttga
     1921 accagacggt ggcctcggtg gcgatgccgt cgaactgcag ctccaggtgc ttgccctggt
     1981 cggcggggtc gagctgcaga gtgcggcggt accaggccac gcccttgggg cggtagcctt
     2041 gggcgacgtt ggcggtttct tcgaacggcc cctcgaccac gaagtcgtgc ggcaggtcta
     2101 gctcgcgcca cgacgaggca tcgtacctga ggctggccgc cccggccgcc gcgccggcct
     2161 tggtgctggc gtaggtctgg tcgccggagt gcggcggcga ggtgacgatg tcgcccctgt
     2221 ggaagcgcca cccgaggtcc agcgacagcc gctcgcccgg gccccaggcc gatcgcgcgg
     2281 tggcgtcctt cgccaccggc tcagccgtcg caccgggacg ggccagggcc gcgccggccg
     2341 ccgccacacc cgcgaccttc agaaaccgcc gccgttccat gcgctctgcc ctctgacccg
     2401 ccggctcatc gcggcggttg gcggcagggt gacggcgacg cctgttcgcg gcaagcaaaa
     2461 ggccgccggg tcgccccgac ggcctgatgt tcagttcgag cgaggcgtga gccttacttg
     2521 atgatcttgg agaccacgcc ggagcccacc gtgcggccgc cctcgcggat ggcgaagcgc
     2581 aggccctggt ccatggcgat cggggtgatc agctcgatgg tcagctcggc gttgtcgccg
     2641 ggcatgatca tctccacgcc ctccttcagc ttgatgatcc cggtcacgtc ggtggtccgg
     2701 aagtagaact gcgggcggta gttggtgaag aacggggtgt gacggccgcc ctcttccttg
     2761 gtcaggatat aggcttccgc caggaactcg gtgtgtggcg tgatgctacc cggcttgcag
     2821 agcacctggc cgcgctcgac gtcttcacgc ttggtgccgc gcaggaggac accgacgttg
     2881 tcgccggcct ggccctggtc gagcagcttg cggaacatct ccacgcccgt gcagatggtc
     2941 ttctgcactt cgcggatgcc gacgatctcg acttcctcgc cgaccttgac gatccccttc
     3001 tcgatacggc cggtgaccac cgtgccccgg ccggagatcg agaacacgtc ttccaccggc
     3061 atcaggaacg gctggtcgat gggccgctcg ggctgcggga tataggcgtc gacctgggtc
     3121 atcagctcca ggatcgagtt ctcgccgatc accggatccc cgccgtccag cgccaccttg
     3181 gccgagccct tgacgatcgg gatgtcgtcg ccggggaact cgtaggagga gagcagctcg
     3241 cggacttcca tctcgacgag gtccaagagc tcctcgtcgt ccaccaggtc gaccttgttc
     3301 atgtagacca ccagcgccgg cacgcccacc tgacgggcga gcaggatgtg ctcgcgggtc
     3361 tgcggcatcg ggccgtcggc ggccgagacc accaggatcg cgccatccat ctgcgccgcg
     3421 ccggtgatca tgttcttcac atagtcggcg tggccggggc agtcgacgtg ggcgtagtga
     3481 cggttcttcg tctcatattc cacgtgggcg gtgttgatgg tgatcccgcg ggccttttcc
     3541 tcaggcgccg cgtcgatgtc cgcatagctc atcgacttgg ccccgccggt cttcgccagg
     3601 gtgaaggtga tcgccgccgt cagcgtcgtc ttgccgtggt caacgtgacc gatcgtgccg
     3661 atgttgcagt gcggcttatt gcgttggaat ttttc
//
LOCUS       DATAJL010000255         2480 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79281,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000255 DATAJL010000000
VERSION     DATAJL010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79281"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..930
                     /locus_tag="VHN39_04900"
     CDS             <1..930
                     /locus_tag="VHN39_04900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX2815704.1"
                     /translation="GAGFSGASALHLNIFGPMPLVKFGTAEQKQRLIPRLISGEDKMC
                     FGVTEPDAGLDTTSLTTQAVRTNEGYVIRGRKMWTTMAQRATKMLIVARTTPRAEVKK
                     ATDGISLFYVDFDREKIQATPIAKMGRKAVESNAVFIDDLEVSADALVGEEGRGFYYL
                     LEGLNPERVLIGAEAVGLGRAALKRAAGYAKERVVFGRPIGQNQGIAHPLARCWAELE
                     AANLMAFKAAALYDAGRDCGAEANAAKYLGGEAGFRACETAILTHGGMGYAREYDVER
                     YFREAMIPRIAPVSREMIFNFIAERVLGLPKSY"
     gene            complement(934..1623)
                     /locus_tag="VHN39_04905"
     CDS             complement(934..1623)
                     /locus_tag="VHN39_04905"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2815705.1"
                     /translation="MVIRQVFPFGFEARSGRRLPPHIRMAIGVSLALHASVLAYLAYA
                     KFNPPLEGAQPYDPPVIMELFRPKTPEPLKPIVEKPPVIVHNTVVREVPLIPPFETPK
                     QIETPKEDTMVQTVKFEVATADPPQPTKSHVIGNPSWLRKPTGEEMANVYPEAAVRHD
                     IAGIASLSCIVGASGTVHDCRIGAETPAGAGFGPAALKLTRFFKMSPQTLDGQPVDGA
                     TVNIPIRFALK"
     gene            1862..>2480
                     /locus_tag="VHN39_04910"
     CDS             1862..>2480
                     /locus_tag="VHN39_04910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815706.1"
                     /translation="MTYRHLLLTAAATSLMLAACNQQPAAPATGAPIASLPLAEAAPP
                     PEAAAPYADALPPAPPIPRAVKPRRPVYAYVDDAYRMGDAFADSPPDYTVAYEGEHPY
                     VWRANDGEYRVVEDTPDGEREYFYRGDSDYPFLVRDNQYSYAYDDDRLVEVYDSYGRP
                     YPNYAPSVLDIAARYLFRARVLHNAALHEQRQAAYAGDWRARRTAV"
BASE COUNT          404 a          842 c          842 g          392 t
ORIGIN      
        1 ggcgccgggt tctcgggcgc gagcgcgctg cacctgaaca tctttgggcc catgccgctg
       61 gtgaagttcg gaacggctga gcagaagcag aggctgatcc cccggctgat ctccggcgag
      121 gacaagatgt gctttggcgt caccgagccc gacgctggcc tcgacaccac cagcttgacc
      181 acccaggccg tgcgcaccaa cgagggctac gtcatccgcg gccggaagat gtggaccacg
      241 atggcgcagc gggcgaccaa gatgctgatc gtggcccgca ccacgccgcg cgccgaggtg
      301 aagaaggcca ccgacggcat cagcctgttc tacgtcgact tcgaccgcga gaagatccag
      361 gcgacgccga tcgccaagat gggccgcaag gccgtggagt cgaacgcggt gttcatcgac
      421 gacctggagg tctcggccga cgccctggtc ggcgaggagg gcaggggttt ctactacctg
      481 ctggaggggt tgaaccccga gcgggtgctg atcggggccg aggccgtcgg cctgggccgc
      541 gcggcgctga agcgggccgc cggctacgcc aaggagcggg tcgtgttcgg ccggcccatc
      601 ggccagaacc aggggatcgc ccacccgttg gcccgctgct gggccgagct cgaggccgcc
      661 aacctgatgg ccttcaaggc cgccgccctc tacgacgccg ggcgcgattg cggggcggag
      721 gccaatgcgg ccaagtacct gggcggcgag gccggcttcc gtgcctgcga gaccgcgatc
      781 ctgacccacg gcggcatggg ctacgccagg gaatatgacg tggagcgcta cttccgcgag
      841 gcgatgatcc cgcgcatcgc cccggtcagc cgcgagatga tcttcaactt catcgccgag
      901 cgggtgctgg gcctgccgaa gagctactga ggcctatttc agagcgaagc ggatcgggat
      961 gttcaccgtc gctccatcga ccggctggcc gtccagggtc tgcgggctca tcttgaagaa
     1021 ccgggtgagt ttgagggccg ccggcccgaa gcctgccccg gccggggttt ccgcgccgat
     1081 ccggcagtcg tggacggtcc cggaggcccc gacgatgcag gagaggctgg cgatgccggc
     1141 gatgtcgtgg cggaccgcgg cctcgggata gacattggcc atctcctcgc cggtgggttt
     1201 gcgcagccaa ctcgggttgc cgatcacgtg cgatttcgtc ggctggggcg ggtcggcggt
     1261 ggcgacctcg aacttcacgg tctggaccat cgtgtcctcc tttggcgtct cgatctgctt
     1321 cggagtctcg aacggcggga tcagcgggac ctcgcggacc accgtattgt ggacgatcac
     1381 cggcggtttc tcgacgatcg gcttgagcgg ctctggcgtc ttgggcctga agagttccat
     1441 gatgaccggc ggatcgtagg gttgagcccc ttcgagcggc gggttgaact tcgcataggc
     1501 gagataggcc agcacgctgg cgtgcagggc cagcgacacg ccgatcgcca tgcggatgtg
     1561 cgggggcaag cgccggccgc tgcgcgcctc gaagccgaag gggaagacct gacggatgac
     1621 cacggcgaac tccctttcct ggggcccaga ccgggtgtat ccaaggtgat gtgtctgggc
     1681 cgaaacaatt tacattcgtg ataatcctcc gaaaattaca gacgtcaagc gggagtttcg
     1741 cctcctgtcc cacaggtgaa cgagccggtt ccgcggccgt tcatgtcaaa tgaacgatgg
     1801 tcctcggcga ggttccgacg gattgatcgg aacggtgaag ctagccacgg gtttgaacgt
     1861 gatgacctac cgccatctcc tcctgaccgc cgccgccacg agcctgatgc tcgccgcgtg
     1921 caaccagcaa ccggccgcgc ccgccaccgg agcgcctatc gccagcctgc ccctggctga
     1981 ggccgcgccg ccgccggagg ccgccgcgcc ctatgccgac gccctgccgc cggccccgcc
     2041 gatcccgcgc gccgtcaagc cgcgccggcc ggtctacgct tatgtggacg acgcttaccg
     2101 gatgggggac gccttcgccg acagtccgcc ggactacacc gtcgcctatg agggcgagca
     2161 cccctatgtc tggcgcgcca acgacggcga ataccgcgtg gtcgaggaca ccccggacgg
     2221 cgagcgcgag tacttctacc gcggcgacag cgactatccg ttcctggtcc gcgacaacca
     2281 gtattcctac gcctacgacg acgaccggct ggtcgaggtc tacgacagct acggccggcc
     2341 ctatccgaac tacgccccct cggtcctcga catcgccgcg cgctacctgt tccgcgcccg
     2401 cgtcctgcat aacgccgccc tgcacgagca gcggcaggcc gcctacgccg gcgactggcg
     2461 cgcccgccgc accgcggtcc
//
LOCUS       DATAJL010000256         2496 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_42945,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000256 DATAJL010000000
VERSION     DATAJL010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42945"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..958
                     /locus_tag="VHN39_04915"
     CDS             11..958
                     /locus_tag="VHN39_04915"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018082195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEX2815707.1"
                     /translation="MQRTFSFPKRHFLSATDLNEVEVANLLDLADGFVALNRQTSKKL
                     DLLKGRTLMNLFFENSTRTQSSFELAGKRLGADVVNMSPRSSAMSKGETLIDTAVTLN
                     AMQPDLLVVRHASSGAASLLAQKVTCSVINAGDGQHEHPTQALLDALSMRRAFGRIAG
                     LKVAICGDVMHSRVARSNVALLQMLGAEVRLVGPPTLIPPQAERWNVSIFHDMREGIA
                     GCDVVMMLRLQLERMDGVMAPSHREYFRFFGLDREKLAYAAPNVRVMHPGPMNRGVEI
                     DSDVADDLSVSLIQDQVEMGVAARMAVLTSLAARLENHR"
     gene            955..2265
                     /gene="pyrC"
                     /locus_tag="VHN39_04920"
     CDS             955..2265
                     /gene="pyrC"
                     /locus_tag="VHN39_04920"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEX2815708.1"
                     /translation="MNAPSQANGRPTAFTNVRIVDPASGYDGPGGLIVTEGVIADVVK
                     GGDMGALSPDVEIIDGKGALLMPGLVDIRVKTGEPGTETKETLKSAALAAAAGGVTSI
                     VLQPDTDPVIDEPSVVDFILRRARDIELVKVHVAGAATKGAHGERMAEIGLMAEAGCL
                     YISDADRPIVDSKVLRRVLAYAKAFGVLVAHRPADPWLSAGAAASEGEFASRMGLPGV
                     PAIAEKIMLERDLALVELTGARLLVDQLTTADALESFRRGRDRGLPVTATTSINHLSF
                     NEIDIGDYRTFCKVDPPLRSEDDRQATIEAVASGLVSIVVSAHAPAPAEDKRLPYDEA
                     APGAVGLQTLLPALLTFHHEGRIPLIDLIRTVTCAPADLLGLAQGRLAKGAPADLVLC
                     DLNAPLIIDADKLISKSKNSPFDGRRLQGKVLRTVVDGRTVYGG"
     gene            complement(2277..>2496)
                     /locus_tag="VHN39_04925"
     CDS             complement(2277..>2496)
                     /locus_tag="VHN39_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815709.1"
                     /translation="LAEGPIVTREFGLWSMCARQLSPTDALILGALDQRPSFEPSDFP
                     ERVVMNLLKSVAAVHRQALTGQQTPVPT"
BASE COUNT          401 a          835 c          877 g          383 t
ORIGIN      
        1 gaacgaggtc ctgcagagga ccttctcctt tcccaaacgc catttcctgt ccgccaccga
       61 cctgaacgag gtcgaggtcg ccaatctgct ggatctggcg gacgggttcg tcgcgctgaa
      121 ccgccagacc tccaagaagc tcgacctgct caagggcagg acgctgatga acctgttctt
      181 cgagaactcg acgcgaaccc agagctcctt cgagctggcc ggcaagcggc tgggcgcgga
      241 cgtggtcaac atgagcccgc gctcctcggc catgtcgaag ggcgagaccc tgatcgacac
      301 ggcggtgacg ctgaacgcca tgcagcccga cctgctggtg gtgcggcacg cctcgtcagg
      361 ggcggcgagc ctgctggcgc aaaaggtgac ctgttcagtg atcaacgccg gcgacgggca
      421 gcacgagcac ccgacccagg cgctgctgga cgcgctctcc atgcgccgcg cctttggccg
      481 gatcgcgggg ctgaaggtgg cgatctgcgg ggacgtgatg cattcgcgtg tggcgcggtc
      541 gaacgtggcg ctgctgcaga tgctgggcgc ggaggtgcgg ctcgtgggcc cgccgacgct
      601 gatcccgccg caggccgagc gctggaacgt cagcatcttc cacgacatgc gcgagggcat
      661 cgccggctgc gacgtggtga tgatgttgcg gctacaactg gagcggatgg acggcgtcat
      721 ggcgccgtcg caccgggagt atttccgctt cttcggcctc gaccgcgaga agctggccta
      781 cgcggcgccc aatgtgcggg tgatgcaccc ggggccgatg aaccgcggcg tcgagatcga
      841 ctcggatgtg gccgacgacc tctcggtcag cctgatccag gaccaggtgg agatgggcgt
      901 cgccgcgcgg atggcggtgc tgacgtcgct cgccgccagg ctcgagaacc accgatgaat
      961 gccccctctc aggcaaatgg gcgccccacc gccttcacca atgtgcggat cgtcgatccg
     1021 gccagcggct acgacggccc gggcggcctg atcgtcaccg aaggtgtcat cgccgatgtg
     1081 gtgaagggcg gcgacatggg cgcgctatcc ccggacgtgg agatcatcga cggcaagggc
     1141 gccctgctga tgcccggcct ggtggacatc cgggtcaaga ccggcgagcc cgggaccgag
     1201 accaaggaga ccctgaaatc ggcggcgctc gcggcggcgg ccggcggggt cacctccatc
     1261 gtcctgcagc ctgacaccga cccggtgatc gacgagcctt cggtggtgga tttcatcctg
     1321 cgccgcgccc gcgacatcga gctggtgaag gtccatgtgg ccggcgccgc caccaagggc
     1381 gcgcatggcg agcggatggc cgagatcggg ctgatggccg aggcgggctg cctctacatc
     1441 tccgacgcgg accggccgat cgtggattcc aaggtgctgc ggcgcgtgct ggcctacgcc
     1501 aaggccttcg gggtgctggt agcccaccgt ccggccgatc cctggctgtc cgccggcgcg
     1561 gcggccagcg agggggagtt cgcctcgcgg atgggactgc cgggcgtgcc ggccatcgca
     1621 gagaagatca tgctggagcg ggatctggcg ctggtggagc tgaccggcgc gcggctgctg
     1681 gtcgaccagc tcaccacggc cgacgccctt gagagtttcc ggcgcggccg cgaccggggc
     1741 ctgccggtca ccgcgaccac gtcgatcaac cacctgtcgt tcaacgagat cgacatcggc
     1801 gactaccgca ccttctgcaa ggtcgacccg ccgctccgga gcgaagacga ccgccaggcg
     1861 acgatcgagg ccgtggcctc gggcctggta tcgatcgtgg tctcagccca tgcgcccgcc
     1921 cccgccgagg acaaacgcct gccctacgac gaggccgcgc ccggcgccgt gggcctgcag
     1981 accctgctgc cggcgctgct caccttccac catgagggcc gcatcccgct gatcgacctg
     2041 atccgcacgg tgacttgtgc gcccgccgac ctgctgggcc tggcgcaagg ccggttggcg
     2101 aagggcgcgc cggccgacct ggtgctctgc gacctcaacg cgccgctgat catcgacgcc
     2161 gacaagctga tctcgaaatc caagaactcg cccttcgacg gacgcaggct gcagggcaag
     2221 gtgctgcgca cggtggtgga cgggcggacg gtgtacgggg gctgaaccgt gtggacctag
     2281 gtcggcacgg gtgtctgctg gcccgtcagc gcctgcctgt gcacggcggc gaccgatttc
     2341 aacaggttca tcaccacgcg ttccgggaaa tccgacggct caaagcttgg ccgctgatcc
     2401 agagcgccga ggatcagggc gtccgtggga gatagttgtc gggcgcacat gctccagaga
     2461 ccaaattcac gggtcacgat ggggccttcc gccagg
//
LOCUS       DATAJL010000257         1792 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105006,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000257 DATAJL010000000
VERSION     DATAJL010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1792)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1792)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1792
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105006"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VHN39_04930"
     CDS             complement(<1..205)
                     /locus_tag="VHN39_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815710.1"
                     /translation="MGTKPTKRCVLLGTTLLSTLAITHAALAQTAKTTTAAAVTATDV
                     GELVVTGSRIPRPNLEEPTPVTVL"
     gene            complement(571..1050)
                     /gene="greA"
                     /locus_tag="VHN39_04935"
     CDS             complement(571..1050)
                     /gene="greA"
                     /locus_tag="VHN39_04935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEX2815711.1"
                     /translation="MAVAFTREEDYESQAANLPDRPVSPHPNLVTASGLAAIETELAA
                     ARAAYAAAQSEGGISADRTAMARATRDLRYWSARRGNAQLTEPAANPGKVQFGGTVEF
                     EREDGRRQAFRIVGEDEADPACGSVSYASPLACALLGKAVGDTALLNGAEVEVTAIR"
     gene            complement(1111..>1792)
                     /locus_tag="VHN39_04940"
     CDS             complement(1111..>1792)
                     /locus_tag="VHN39_04940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815712.1"
                     /translation="ADSFAGHPLIICPATRQVDRVALEAVAGGAQSLGALHADLAWPV
                     IVRPVGSHAGKDLEKIDGAEALAAYLASHPAQAFFVAAFFDYSGADGLYRKLRVVFVN
                     GRPFVAHMAVSERWMVHYLNADMGKPDNRREEARMMATFDQGFAIRHSAAFEALTQTF
                     GLDYVGIDCAETQDGRLVLFEADVAMIVHAMDSAELHPYKKPAMAKLFAGFVDGMTAL
                     VERRRIAA"
BASE COUNT          288 a          566 c          645 g          293 t
ORIGIN      
        1 cgagcaccgt gaccggcgtg ggctcctcca ggttcggccg cggaatccgc gagccggtga
       61 ccaccagttc ccccacatca gtagctgtca ccgccgccgc ggttgtggtc ttggccgtct
      121 gggccaaggc cgcgtgcgtt atcgccaggg tcgagaggag agtcgtgccc agaagcacgc
      181 atcttttggt cggtttcgta cccatatcag ccctccaaag cgaaaatccg gaaccttcac
      241 gccggaaaat gtcgccggga ctgtcgtctg acgcagcgtc aggccgccat aacaaatgca
      301 tctaaagtac gtcaaaatgt cgcagtgtga ccttggcaac acggctcgac cctagatagc
      361 gtcgcttttg cgaggtgttg cagtcatcaa cgcctgttgt tcgcgcaaga tgttgtagtc
      421 gtgcgtgaat gtggtctatc ggcgttcagt cgacggaaaa tgtcgcgacg cgcctgtcgc
      481 tcgcgaatcc agcccatcgc gcaattttac cgagtaaatt atcgaccaga aacgcgccaa
      541 tccggggccg aatgcgaccg cccccggacc ctagcgaata gcggtgacct cgacctcggc
      601 gccgttcagc agggcggtgt cgccgaccgc cttgcccagc agggcgcagg cgagcgggga
      661 ggcgtaggag acgctgccac aggccgggtc ggcctcgtcc tcgccgacga tccggaaggc
      721 ctggcggcgg ccgtcctcgc gctcgaattc caccgtcccg ccgaactgga ccttgccggg
      781 gttggcggcg ggttcggtga gctgggcgtt gccccgccgc gccgaccagt agcgcaggtc
      841 gcgggtggcg cgggccatgg cggtgcggtc ggcgctgatg ccaccctcgg actgggctgc
      901 ggcgtaggcc gctcgcgcgg cggccagctc ggtctcgatg gcggcgagcc cagaggcggt
      961 gaccaggttc gggtgcggcg agaccggccg gtccggcagg ttcgcggcct gggactcgta
     1021 gtcttcctct cgggtgaatg cgacggccat ggggctttag ataggccccg ggcctcggaa
     1081 ggggaagcgg cgcggcggcc ccaggcggcc ctaggcggct atgcggcggc gttccaccag
     1141 cgcggtcatg ccgtccacga agcccgcgaa gagcttggcc atggcgggtt ttttgtaggg
     1201 atgcagttcg gcggaatcca tggcgtggac gatcatcgcc acgtcggcct cgaacaacac
     1261 caggcggccg tcctgggtct cggcgcaatc gatgccgacg tagtcgaggc cgaaggtctg
     1321 ggtcagcgcc tcgaaggccg cgctgtggcg gatggcgaaa ccctggtcga aggtcgccat
     1381 catccgcgcc tcttcgcggc ggttgtcggg cttgcccatg tcggcgttga gatagtgcac
     1441 catccaacgc tcggagacgg ccatgtgggc gacgaagggg cggccgttca cgaacaccac
     1501 ccggagcttg cggtagaggc cgtcggcgcc ggagtagtcg aagaaggcgg cgacgaagaa
     1561 ggcctgggcc ggatggctgg ccaggtaggc ggcaagcgcc tcggcgccgt cgatcttctc
     1621 caggtccttg ccggcgtgcg agccgacggg gcggacgatc accggccagg cgaggtcggc
     1681 atgcagggcg ccgagcgatt gcgcgccgcc agcgacggcc tcgagcgcga cgcggtctac
     1741 ctggcgggtg gccgggcaga tgatcagcgg gtggccggcg aagctgtcgg cc
//
LOCUS       DATAJL010000258         2097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92029,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000258 DATAJL010000000
VERSION     DATAJL010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92029"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..369
                     /locus_tag="VHN39_04945"
     CDS             <1..369
                     /locus_tag="VHN39_04945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2815713.1"
                     /translation="GLVPDGGATYLLPRLVGKARAMELVLLGEKLPARTALEWGMINR
                     CVPDAELMPTAMALATQLADGPISLGYTRNLIWASLDAAWHDQVEAEAYVQGDAARTE
                     DAREGIMAFVQKRPAEFKGR"
     gene            410..1270
                     /locus_tag="VHN39_04950"
     CDS             410..1270
                     /locus_tag="VHN39_04950"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX2815714.1"
                     /translation="MSQTRPLAVFAYDFDGTLAPGNMQEHAFIPDELGMSHEDFWAET
                     KLIAHEQRGDPILAYMHLMLEKARDKGVELSRDAWRRRGANLPLFPGVEGWFERQTAR
                     AASLGLDLRHFIISSGNRELIEGSPIAKHFERIYASAFLFDARDDAIGAALAVNYTSK
                     TQYLFRINKWTLEEWDETSINKVMAKGERPVPFDRMAFFGDGLTDIPTMRLLTDQGGA
                     AVAVYNPQSERSIKAARQLREDGRARLEGVADYTEGSELDRLAEGLLVEMAARVGAYG
                     LALWPQGPAA"
     gene            complement(1275..1454)
                     /locus_tag="VHN39_04955"
     CDS             complement(1275..1454)
                     /locus_tag="VHN39_04955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815715.1"
                     /translation="MDPERPPDLDAEYRLVHGPWPRWALQISLLKLALRTAAIVVALC
                     LLTFLIAVLVLKFRR"
     gene            1611..1976
                     /locus_tag="VHN39_04960"
     CDS             1611..1976
                     /locus_tag="VHN39_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2815716.1"
                     /translation="MTTAPAGRHALIIEDEMLIALEVESLLHDFGFSSCDIVDNPADA
                     VKSALARRPDLVTADIRIVGGTGVEAMVAITERLGPVPHIYVTGNGDMLAGQTAAPVV
                     DKPLTRRALAEACERACAA"
BASE COUNT          371 a          735 c          684 g          307 t
ORIGIN      
        1 ggcctggtcc ccgacggcgg cgcgacctac ctcctgcccc gcctggtcgg caaggcccgg
       61 gccatggaac tggtcctcct gggcgagaag ctgccggcca ggaccgcgct ggagtggggc
      121 atgatcaatc gctgcgtccc ggacgccgag ctgatgccga cggccatggc gctggcgacc
      181 cagcttgccg acggcccgat ctcgctgggc tacacccgca acctgatctg ggcctccctc
      241 gacgcagcat ggcacgacca ggtggaggcc gaagcctatg tgcagggcga cgctgcgcgc
      301 accgaggacg cccgcgaggg catcatggcc ttcgtgcaga agcggcccgc cgagttcaaa
      361 gggcgctgac ctctcccgga aaccgcctgg cgccgataga agggcggcca tgagccagac
      421 ccggcccctg gccgtcttcg cctatgactt cgacggcacc cttgcgcccg gcaacatgca
      481 ggagcacgcg ttcatccccg acgagctcgg gatgagccac gaggacttct gggccgagac
      541 caagctcatc gcccacgaac agcggggcga cccgatcctc gcctacatgc acctgatgct
      601 ggagaaggcg cgcgacaagg gcgtcgagct ctcccgcgac gcctggcgcc gccgcggcgc
      661 gaacctgccg ttgttccccg gcgtcgaagg ctggttcgaa cgccagacgg cgcgcgccgc
      721 gtccctcggc ctcgacctgc gtcacttcat catctcgtcc ggcaaccggg aactgattga
      781 gggctcgccg atcgcgaagc atttcgaacg aatctacgcc tcggccttcc tgttcgacgc
      841 gcgcgatgac gccatcggcg cggctctggc ggtcaactac acgtcgaaga cccagtacct
      901 cttccgcatc aacaaatgga cgctggagga atgggacgag acgtccatca acaaggtcat
      961 ggcgaaaggc gaacggccgg tgccctttga ccgcatggca ttctttggcg acggcctgac
     1021 cgacatcccg accatgcgcc tgctcaccga ccagggcggc gctgcggtcg ccgtctacaa
     1081 cccccaaagc gagagaagca tcaaggccgc tcggcagctc cgcgaggacg gccgcgcccg
     1141 cctggagggg gtcgcggact ataccgaggg ctcggaactc gaccggctcg cggaggggtt
     1201 gctcgtcgaa atggccgccc gggtcggcgc ctacggtctg gcgctctggc cgcaaggacc
     1261 cgccgcctag ggcgttagcg ccggaatttc agcaccagga cggcgatcag aaacgtcagc
     1321 agacagagcg ccaccacgat cgcggccgtc ctcagggcca gcttcaggag actgatctgc
     1381 agggcccaac gcggccaagg cccatggacc agccggtact ccgcgtcgag atctggcggg
     1441 cgctcggggt ccatggctca tgatggcctg cccgggcccg caagtcatcg ccggctgagg
     1501 gcgacgcggc cctgaacgac ggaatccgga cgttatttgc gttgcatcaa tgccttgggc
     1561 ggtgacaatg gacacattgt cgcactcaca gacacagtat cagtagcctc atgaccaccg
     1621 cgccggccgg cagacacgcc ctgattatcg aagatgagat gctgatcgcg ctggaggtgg
     1681 aaagcctgct ccacgacttc ggcttttcga gctgcgatat cgtcgataac cccgccgacg
     1741 ctgtgaagag cgcgctcgct cgccgcccgg acctggtcac cgccgacatc cgcatcgtgg
     1801 gcggcacggg agtcgaagcc atggtggcga tcaccgagcg cctgggcccg gtgccgcaca
     1861 tctatgtcac cggcaacggc gacatgctgg ccggccagac cgcggccccc gtggtcgaca
     1921 agcccctgac ccgccgcgcg ctggccgaag cctgcgaacg cgcctgcgcg gcctgaccgt
     1981 cgccgtccag gcgactcccc agcattgcgg cgccatagct tgtggaccat gacacatggc
     2041 ctgaagttca ggtctggcgg gggctcacca tgacgacggc gcggcagcgg gcgatcg
//
LOCUS       DATAJL010000259         1839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_66199,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000259 DATAJL010000000
VERSION     DATAJL010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66199"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..619)
                     /locus_tag="VHN39_04965"
     CDS             complement(<1..619)
                     /locus_tag="VHN39_04965"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HEX2815717.1"
                     /translation="MKLVVVESPGKAKPINKYLGSDYKVLASYGHVRDLPAKDGSVRP
                     DEDFDMSWEVDAKAAKRLNDIAAAAKGCDTLILATDPDREGEAISWHVLEVLKKKKAL
                     AGMTVQRVTFNAITKTAVTEAMKAPRDIDMELVDAYLARRALDYLVGFTLSPVLWRKL
                     PGSRSAGRVQSVALRLVVDREIEIEKFNTQEYWTVEADVSAGSDPF"
     gene            778..1188
                     /locus_tag="VHN39_04970"
     CDS             778..1188
                     /locus_tag="VHN39_04970"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2815718.1"
                     /translation="MPNETPAERAEPGAIWPFFIVSNVSRALAFYCDVLGFQVQFQQP
                     PTDPFFALIYRGGAQLFLKDVGDGVVATPNPTRHRDARWDAYVYTPDPDGLAAQFAAA
                     GAAFAAPLHDNSDNLRGFELTDPDGYVLFFGRPN"
     gene            complement(1260..1523)
                     /locus_tag="VHN39_04975"
     CDS             complement(1260..1523)
                     /locus_tag="VHN39_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815719.1"
                     /translation="MKLRITLTLAALAVAGSALAQPPAPTPEMQAARQAMRQACAADM
                     KTLCDGKEGREMMQCMRGSADKLSAPCKDAMSKMPQRPPPPAG"
BASE COUNT          269 a          617 c          619 g          334 t
ORIGIN      
        1 ggaatgggtc gctgcccgcc gagacgtcgg cctcgacggt ccagtattcc tgggtgttga
       61 atttctcgat ctcgatctcg cggtcgacca cgaggcgcag agccaccgac tgcacccggc
      121 cggccgagcg cgagcctggc agcttgcgcc acagcaccgg cgagagggtg aagcccacca
      181 gatagtccag cgcgcgccgg gccaggtagg cgtccaccag ctccatgtcg atgtcgcgcg
      241 gggccttcat ggcctcggtg acggcggtct tggtgatggc gttgaaggtg acccgctgca
      301 cggtcatgcc ggccagggcc ttcttcttct tcagcacctc cagcacgtgc caggagatgg
      361 cttccccctc gcggtccggg tcggtggcca ggatcagggt gtcgcatccc ttggcggccg
      421 cggcgatgtc gttgagccgc ttggcggcct tggcgtccac ctcccagctc atgtcgaagt
      481 cttcgtccgg acgcaccgag ccgtccttgg ccggcaggtc gcgcacgtgg ccgtaggacg
      541 ccaggacctt gtaatcggag cccaggtact tgttgatggg cttggccttg cccgggcttt
      601 cgacgacgac gagtttcatg cgtgggggat ctgtcgttcc atggaggagc gcccggctgg
      661 cccgggtcgc tcaaaggacg cggaaagtgg gggtgccccc taggccctgt caacgggcca
      721 aaagcggcgc cgtacgggag cccccttaag gggctcattt tttgagggag taggtggatg
      781 ccaaacgaaa cgcctgctga gcgcgccgaa cccggcgcga tctggccctt cttcatcgtc
      841 agcaatgtca gccgggctct ggccttctac tgtgatgtgc tcggattcca ggtgcaattc
      901 cagcagccgc cgaccgatcc attcttcgcc ttgatctacc gcggcggcgc gcagctgttc
      961 ctcaaggatg tcggcgatgg cgtcgtggcc acgcccaacc ccacgcgaca ccgcgacgcc
     1021 cgctgggacg cctatgtcta cacgcccgat ccggacggcc tggccgccca gttcgccgcc
     1081 gccggcgccg ccttcgccgc gccgcttcac gacaacagcg acaacctgcg agggttcgag
     1141 ctgaccgacc cggacggcta cgtcctcttc ttcgggcgtc cgaactaggc ggcgcgcacg
     1201 aaaaggccgg cgaccctcaa ggacgccggc ccagccgtct ttaatagatg tctcggcgat
     1261 cagccggcgg gcggcggcgg ccgctgcggc atcttcgaca tggcgtcctt gcacggcgcg
     1321 ctgagtttgt ccgcggaccc gcgcatgcac tgcatcatct cgcggccttc cttgccgtcg
     1381 cagagcgtct tcatgtcggc ggcgcaggcc tggcgcatgg cttggcgggc ggcctgcatt
     1441 tccggcgtgg gcgccggcgg ctgggcgagc gccgaaccgg cgacggccag ggcggcgagg
     1501 gtaagagtaa ttctgagctt catagaggta gtctccgact tggtttttga gccttcattc
     1561 tagactcggt ccctgccggc attatttccg cgccttgcgg tcagattgcg gccctagcag
     1621 gaccgttgcg cggtgacgcc cgccgaactg gaccgtttcg gcgagcgccc ctcgcgtcag
     1681 gccacggcga gccggcggcg cttgcgcgcc agaccgccaa cagcgccgag gcccacgatc
     1741 atcatggccc agcttgcggg ctccgggatg gccgcggagt tgacggtcag cacgaaattg
     1801 tcggcccgca ggtcgttcgt ctggtcgaag gtcgagggc
//
LOCUS       DATAJL010000260         3262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117776,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000260 DATAJL010000000
VERSION     DATAJL010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3262
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117776"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..2044
                     /locus_tag="VHN39_04980"
     CDS             131..2044
                     /locus_tag="VHN39_04980"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone-dependent
                     dehydrogenase"
                     /protein_id="HEX2815720.1"
                     /translation="MRVSMRTMMLSAAVVTLTVGAARADEWGAYGRDLAGTRFSPLTQ
                     ITPANVANLKPAWTFHTGDISDGKTRGTPRSGFETTPLMLDGRMYLTTPFNRMIALDP
                     TTGKQLWAFDPKLDRAKPYGDGLINRGLAAWRDPKAGKTAACAMTLFEATLDARLVAV
                     DAATGGPCPGFGDKGEVSLRDVARYIPGQYHMTSPPIALDGVVVVGSAIDDNARTAMP
                     SGVVRGFDARTGKQLWAWEPLQAPKDATPQTWNTGAGNAWSVLSADAKRHLVLVPTGS
                     ASPDYWGGLRPGDNRWANSVVALDVRTGKLKWGFQLVHHDLWDYDTAAAPMLTSFKLN
                     GRSVQAVIAGNKTGMVFALDPATGKPVLPVEERPVPQTTLYGEKSSPTQPFPTATPAL
                     VPQSQGPEAVWAVSEPDRKFCADAINGLSGHAMFSPPSEQGILAIPGNVGGINWSGFA
                     WDGAHGRLIVSVTNLPAKVRMIPAAKYVKGDKGDLRAETTMMLGSPYAMSRDFLRAPS
                     GLPCIKPPFGELMAVDLGAGKIVWRVPLGAIEELAPGVGHIAKGSIVLGGPIVTASGL
                     IFQGGTIDRTLRAFSAESGQELWSAELPASAHATPMTYQAGGKQYVVVAAGGSAKIDE
                     ERQGDAIVAYALP"
     gene            complement(2041..2409)
                     /locus_tag="VHN39_04985"
     CDS             complement(2041..2409)
                     /locus_tag="VHN39_04985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4180 domain-containing protein"
                     /protein_id="HEX2815721.1"
                     /translation="MAGQVQDLAGQPVYVCAAVGPSLAEDRNLSDLIGELFGSGARVV
                     AVPLSRLGPEFLRLSSGVAGHVLQKLVNYRFQIAVIGDVSAAVAASGPLRDFVRESNR
                     GKTVWFVENLAALEAKLAAP"
     gene            complement(2412..2822)
                     /locus_tag="VHN39_04990"
     CDS             complement(2412..2822)
                     /locus_tag="VHN39_04990"
                     /inference="COORDINATES: protein motif:HMM:NF024139.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2815722.1"
                     /translation="MSEEVYTVEQFAERLKLHPKTVLRFIRDGRLRAVKVGKSYRILR
                     TEMEAMTGVVRGSQLGGARVTSIVDIPDVAPELAERLARTLPSMRVAQVAHPEPMSLN
                     VAYDTARSHLKVVIAGSPGDTAAMLRMIQLISES"
     gene            2891..>3262
                     /locus_tag="VHN39_04995"
     CDS             2891..>3262
                     /locus_tag="VHN39_04995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815723.1"
                     /translation="MKTALLGAISALALAGVAQAAEPTRYLLEPAAVWTAGDAAPHAG
                     WVVAVEGERITGVGPKGSVRAGAGAINIALPGQTLIPGLIELHSHLLLHAYNEVVWDD
                     QVLKEPPTYRVLRAVGRRLLQH"
BASE COUNT          512 a         1141 c         1152 g          457 t
ORIGIN      
        1 cccaccgctt gtcccgaagc gggcgccgga cggcccggcg ggaacgccgc tggtcactgg
       61 gcggtggcgg cgggacgcgg cagagtgatc ttgcggccaa cccctcgggg aatggttcag
      121 gagcgatgcg atgcgggttt cgatgcgaac gatgatgctg agcgcggcgg tggtgacgct
      181 gacggtcggc gcggcgcgag ccgacgagtg gggcgcctat ggccgcgacc tggccgggac
      241 gcggttctcg ccgctcaccc agatcacccc tgccaatgtg gcgaacctca agcccgcctg
      301 gaccttccac accggggaca tctccgacgg caaaacgcgc ggaacccccc gcagcggctt
      361 cgagaccacg ccgttgatgc tcgacggcag gatgtacctg accaccccgt tcaaccggat
      421 gatcgcgctg gaccccacca ccggcaaaca gctctgggcc ttcgacccca agctcgaccg
      481 cgccaagccc tatggagacg gcctgatcaa ccggggcctc gccgcatggc gcgatccgaa
      541 agccggcaag accgcggcct gcgcgatgac cctctttgag gcgacgctgg acgcgcggct
      601 ggtggcggtg gacgcggcca ccggcgggcc ctgccccggc ttcggcgaca agggcgaggt
      661 cagtctgcgc gacgtcgccc gctacatccc cggccagtac cacatgacct cgccgccgat
      721 cgcgctggac ggggtcgtgg tggtggggtc ggccatcgac gacaacgcgc gcaccgccat
      781 gccctccggc gtggtccgcg gcttcgacgc cagaaccggc aagcagctgt gggcctggga
      841 gccgctgcag gcccccaagg acgccacgcc gcagacctgg aacaccggcg ccggcaacgc
      901 ctggtcagtg ctgagcgccg acgccaaacg ccacctggtg ctggtcccca ccggcagcgc
      961 cagccccgac tactggggag gcctgcgccc cggcgacaac cgctgggcca actcggtcgt
     1021 ggcgctcgac gtcaggaccg gcaagctgaa gtggggcttc cagctcgtcc accacgacct
     1081 gtgggactat gacaccgccg ccgcgccgat gctgaccagc ttcaagctga acggccgcag
     1141 cgtccaggcc gtgatcgccg gcaacaagac cggcatggtc ttcgccctcg accccgcgac
     1201 cggcaagccg gtgctgccgg tggaggagcg gcccgtgccg cagaccacgc tctatgggga
     1261 gaagagctcg ccgacccagc ctttcccgac ggccaccccg gcgctcgtgc cgcaatcgca
     1321 aggcccggag gcggtctggg cggtctccga gcccgaccgc aagttctgcg ccgacgcgat
     1381 caacggcctg tcgggccacg ccatgttctc gccgcccagc gagcagggca tcctggcgat
     1441 ccccggcaac gtcggcggca tcaactggag cggctttgcg tgggacggcg cccacggccg
     1501 gctgatcgtc tcggtgacca acctgccggc caaggtgcgg atgatccccg ccgccaaata
     1561 tgtgaagggc gacaagggcg acctgcgcgc cgagaccacc atgatgttgg gatcgcccta
     1621 cgccatgagc cgcgacttcc tgcgcgcacc ctcgggcctg ccctgcatca agccgccgtt
     1681 cggcgagctg atggctgtgg acctgggcgc cggcaagatc gtctggcggg tcccgctggg
     1741 cgcgatcgag gaactcgcgc cgggcgtcgg ccacatcgcc aagggctcca tcgtgctggg
     1801 cggaccgatc gtgacggcca gcggcctgat cttccagggc ggcacgatcg accgcacctt
     1861 gcgcgccttc tcggccgaga gcggccagga gctctggagc gccgaactgc cggccagcgc
     1921 gcatgccacg cccatgacct atcaggccgg cggcaagcag tacgtggtgg tcgccgccgg
     1981 cggctcggcc aagatcgacg aggagcgcca gggcgacgcg atcgtggcct acgccctgcc
     2041 ctagggcgcg gcgagcttcg cctcgagcgc ggccaggttc tcgacgaacc acacggtctt
     2101 gccgcggttg gactcgcgga cgaagtcgcg gagcgggccg ctggcggcga cggcggcgga
     2161 gacgtcgccg atcaccgcga tctggaagcg gtagttgacc aacttctgca ggacgtggcc
     2221 ggcgacgccg gaggacaggc gcaggaactc cgggccgagg cggctcagcg ggaccgcgac
     2281 gaccctggcg ccggaaccga agagctcgcc gatcaggtcg gagaggttgc ggtcctccgc
     2341 caggctgggg ccgaccgcgg cgcagacata gaccggctgt ccggcaagat cctggacttg
     2401 tccggccatg gtcaggactc ggaaatgagc tggatcatcc gcagcatcgc cgcggtgtcg
     2461 cccggggagc cggcgatcac caccttcagg tggctgcgtg cggtgtcgta ggccacgttc
     2521 aggctcatcg gttcgggatg ggcgacctgg gccacgcgca tgctgggcag ggtgcgagcc
     2581 aggcgctcgg cgagctccgg cgcgacgtcg ggaatgtcga cgatgctggt gacgcgcgcg
     2641 ccccccaact gcgagccccg gacgacgccg gtcatggcct ccatctcggt gcgcaggatg
     2701 cggtaggact tcccgacctt gaccgcgcgc agtcggccat cgcgaatgaa ccgcagcacg
     2761 gtcttggggt gcagcttcag ccgttcggcg aactgctcga cggtgtagac ttcttccgac
     2821 atgggagtcg gggctccgga tcattgtgtc tcattgttcc ctatcactcc ctattcagga
     2881 gtcaattgcg gtgaaaacag ccttattggg ggcaatctcg gctctggcgc tggccggcgt
     2941 ggcccaggcc gcggagccga cgcgctacct gctggagccg gccgcggtct ggaccgccgg
     3001 ggacgcggcg ccgcacgctg gctgggtggt ggcggtggag ggtgagcgga tcaccggcgt
     3061 cgggccaaag ggctcggtga gggccggcgc gggcgcgatc aacatcgccc tgcccggcca
     3121 gaccctgatc cccggcctga tcgagctcca ctcgcacctg ctgctgcacg cctacaacga
     3181 ggtggtctgg gacgatcagg tgctgaagga gccgccgacc taccgcgtgc tgcgcgcggt
     3241 aggtcggcgg ctccttcagc ac
//
LOCUS       DATAJL010000261         7854 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_43014,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000261 DATAJL010000000
VERSION     DATAJL010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7854
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43014"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..961)
                     /locus_tag="VHN39_05000"
     CDS             complement(<1..961)
                     /locus_tag="VHN39_05000"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2815724.1"
                     /translation="MAGPAIELSGVEKRYGAHAALAGVSLSVAPGEFTALVGGSGSGK
                     TTLLKTINGLVRPDAGSVRVLGEDVAAAPPHLLRRRIGYVFQEVGLFPHLTVAENIAI
                     TPRLLGWDRKRIDGRVANLLGLVDLPLEVGTRAPAALSGGQRQRVGVARALAAEPKLM
                     LMDEPFGALDPLTRDALGTDYRALHDRLGLTTVMVTHDMAEAVLLADRIVVLRDGAIV
                     ADGTPADLLARTRDEGVRALLEAPKRQAALDQAEQLVRRHGETCGGAAAEQHVDPVLG
                     LEAGEDVVAERGLADRRRQCGGADGPHRGGAHAGASVERKEDLG"
     gene            complement(982..1296)
                     /gene="fliE"
                     /locus_tag="VHN39_05005"
     CDS             complement(982..1296)
                     /gene="fliE"
                     /locus_tag="VHN39_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEX2815725.1"
                     /translation="MMTALAATKAYATAQKALAVDPGEMGSQAMSPGGGFGDILKSAM
                     SDAMKSSKNAETQMANQVQGKAQLIDVVTAVSSAESSLSTVMAIRDQVISAYQEIMRM
                     PI"
     gene            complement(1310..1732)
                     /gene="flgC"
                     /locus_tag="VHN39_05010"
     CDS             complement(1310..1732)
                     /gene="flgC"
                     /locus_tag="VHN39_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018080849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEX2815726.1"
                     /translation="MADSPVSSSTTQSIAVSALRAQQARMRIIAENLANANSTSKTPG
                     GDPYRRQAPVFQAATVAGGGKGVKMMRAEPDKAPFNSTFDPNNPSADATGYVKTPNVD
                     PLIEAMDMRDAQRAYEANLNVIETIRAMDSRTLDLLKQ"
     gene            complement(1750..2175)
                     /gene="flgB"
                     /locus_tag="VHN39_05015"
     CDS             complement(1750..2175)
                     /gene="flgB"
                     /locus_tag="VHN39_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEX2815727.1"
                     /translation="MELGDIPLFAMLKSRLGYLSDRQRVIAENVANANTPGYKARDLK
                     AFSFQAQVQAASGAAAATPAGTMAVTQPGHMQPKGTGSSGMKAVKAADSEVTLDGNGV
                     VLEDEMVKLTQARMDYDAAIGFYQQSLSMLKMAVRKPGG"
     gene            2269..2544
                     /locus_tag="VHN39_05020"
     CDS             2269..2544
                     /locus_tag="VHN39_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliO"
                     /protein_id="HEX2815728.1"
                     /translation="MQPSDFLRALFALVLTLGLIGLCAVALRRFGPEALARFASPKKA
                     RRLAVVESLVLDPARRLVIVACDGKERLLLLGEGQLVSPLDLPKGRS"
     gene            2541..3338
                     /gene="fliP"
                     /locus_tag="VHN39_05025"
     CDS             2541..3338
                     /gene="fliP"
                     /locus_tag="VHN39_05025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516375.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEX2815729.1"
                     /translation="MMRELFKAIRDLPAAEWRRAFGLAVLTTVACLIFPAVAAAQALN
                     INLGTGAGLTERVVQLIGLMTVLSLAPSIVIMTTSFTRIVVVLSLLRTALGLQQSPPN
                     SVIISLSIFLTAIVMGPTLQKSYDDGIKPLMDQQIELPQAFDAAGGPLKTFMLSQVDR
                     EDLALFITLSKIPRPATAQDIPIRVVTPAFMISELKRAFEIGFLLFVPFLVIDLVVAS
                     VLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVQSFQHGAGT"
     gene            3493..4224
                     /locus_tag="VHN39_05030"
     CDS             3493..4224
                     /locus_tag="VHN39_05030"
                     /inference="COORDINATES: protein motif:HMM:NF023204.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RcnB family protein"
                     /protein_id="HEX2815730.1"
                     /translation="MKKLIATVTVVGLFAFGPAALAQDEHKRADNPAQGARQAGPGAA
                     AGHAPARASGGQGGGGQGGGGHSGGPSERASGRSQGQGAQAQSPPRQASQRQDTQRQV
                     APRQAPTERVRSEPAIGRGTSGAVNAPASGSRNIQAQGRTSNTGPARRPGDFAALRGN
                     VQASRHFQAGAYRPPQGFQSRHWGYGDRLPRAYFARNYWLTNFLIYGLLSPPPGLVWV
                     RVGPDALLIDEYSGEVIRVDYGVFY"
     gene            complement(4237..4716)
                     /locus_tag="VHN39_05035"
     CDS             complement(4237..4716)
                     /locus_tag="VHN39_05035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815731.1"
                     /translation="MPLDFGQRGKSRSLKGVWLGLLPALAIIGALLAVNAGYHRQKEL
                     AQGWAGDLPGCPAISATAYAAKGYPAGERATLYDEVTFTRQFGHVMCSDADNRGALGF
                     LTHPVCQFTGPAAIRVKAGKSETFFEPGVGQLATVSVERGRAQCALGGKFKPSAGPG"
     gene            complement(4797..6761)
                     /locus_tag="VHN39_05040"
     CDS             complement(4797..6761)
                     /locus_tag="VHN39_05040"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEX2815732.1"
                     /translation="MKRVLLATAAIAGLAFAGLAAPAGIAADTPSATPQHVDDFQLTD
                     HTRLAQHLHYFGYTPAIVIMSRSNGTAFSHTADAELQKLSDAYKARGVVVWALDSNLA
                     DSRDAVAATAAQESLTVPVLMDEQQLVGEQLKVQREGEVFVINPKTWTVAYRGPLDGH
                     ASAAVDALLAGQTPQITRVSTTAGKTIAFPAEAHAADFANISYSKDVAPILQDKCVSC
                     HIAGGIGPFAMNSYELVKGFAPMIRETVRTHRMPPYFADPHIGVFKNDQGLTADQTKT
                     LVHWIEAGAPRGNGPDPLLANANKVAPEWPPELGKPDVIVDLPTFKVPATGLVEYQNQ
                     VVDNPFKENTWLKAIAMKPGDRRVLHHVVSNHIPDPNQPAAAIPGGSVGSYTPGAQPQ
                     VMADGSGAPVPAGGKLHFQMHYTTMGKETVDKTEVGFYTLKTAPEYIKRSTVISTFAL
                     YIPAGEARHQEIAYLTFPADAYLYTLYPHSHYRGFHVELKAVTPDGKEAMLLSLPKYD
                     FNWQRDYDPVKPILVKAGTKLVATWVYDNSEHNPANPDPKRNVTWGEQTPDEMMYFRV
                     NYRWADETVTNVRNDLQQKLFASQMMGSLDSNLDGFIEPNELKGPLAYLRARFADLDT
                     NHDGKLDAAELAKAMPSRRMARAKGETPDL"
     gene            complement(6991..>7854)
                     /locus_tag="VHN39_05045"
     CDS             complement(6991..>7854)
                     /locus_tag="VHN39_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoglucanase"
                     /protein_id="HEX2815733.1"
                     /translation="ADGLEPVQALALFQDFKELTPIGSDGDLMVRKLVRRLVDVDLLD
                     QAAELLKYQADNRLDGVPRAQVATDLAVIYLMDKKPEKAIEAINGSRTTVLPNALNAE
                     RRLIESRAWAGVGRYDAALEIIEKDTTQEGQDLRAEITWKQKDWAKAGPQFEKALGAR
                     WKNPAALSADEEGKLLRAGVAYSLAGDDAALTRLSSQYKGFFDAAHNPEALRIALTGV
                     STNRLSVADFGRVSADNEAFAGWVDKMKVRFKTRPAPVGTGKPVTPPAAPIKPAGPAK
                     QAQAATGAAKG"
BASE COUNT         1163 a         2602 c         2705 g         1384 t
ORIGIN      
        1 agccgaggtc ttccttgcgc tccaccgaag ccccggcgtg cgcaccgccg cggtgtggac
       61 catcggcgcc gccacattgg cgacgccggt cggccagacc tcgctcggca actacatctt
      121 ctccggcctc cagaccgaga actgggtcta cgtgctgttc ggctgcggcg cctccgcagg
      181 tctcgccatg gcggcggacc agctgctcgg cctgatcgag agcggcctgg cgcttgggcg
      241 cctccaggag cgcgcggacg ccctcgtcac gggtccgggc cagcaggtcg gcgggcgttc
      301 cgtcggcgac gatcgcgccg tcgcgcagca ccacgatgcg gtcggccagc agcaccgcct
      361 cggccatgtc gtgggtcacc atcacggtgg tcaggcccag ccggtcgtgc agggcgcggt
      421 agtctgttcc gagcgcgtcg cgggtcagcg gatcgagcgc gccgaacggc tcgtccatca
      481 gcatcagctt gggttcggcc gcgagcgcgc gcgccacgcc gacccgctgg cgctggccgc
      541 cggaaagcgc ggcgggcgcg cgggtcccga cctccagcgg caggtccacc aggcccagca
      601 ggttcgccac ccggccatcg atgcgtttgc ggtcccagcc cagcaggcgg ggcgtaatcg
      661 cgatgttctc ggccaccgtc aggtgcggga agaggcccac ctcctggaag acgtagccga
      721 tcctgcggcg caacaggtgc ggcggcgcgg ccgcgacatc ctcgcccagc acccgcaccg
      781 agcccgcgtc ggggcgcacc aggccgttga tggtcttgag aagggtggtc ttgccggagc
      841 ccgagccgcc gaccagggcg gtgaattcgc cgggagccac tgataggctg acgccggcca
      901 gggcggcgtg cgcgccgtag cgcttttcaa cccccgaaag ctcgatcgcc ggccccgcca
      961 tcggcaaggc gtagcatgag cctaaatcgg catccgcatg atttcctggt aggcgctgat
     1021 cacctgatcg cggatcgcca tgaccgtcga caggctggat tccgcggacg agacggcggt
     1081 gaccacgtcg atcagctggg ccttgccctg cacctggttg gccatctggg tctcggcgtt
     1141 cttcgaagac ttcatggcgt cggacatggc cgacttcagg atgtcgccga agccgccgcc
     1201 gggggacatc gcctgcgaac ccatctcgcc cggatcgacg gcgagcgcct tctgggcggt
     1261 ggcgtaggcc ttggtggcgg cgagcgcggt catcatggct taggcccgcc tattgcttca
     1321 ggagatcgag ggtgcgggag tccatggccc ggatcgtctc aatgacgttg aggttggctt
     1381 cgtaggcccg ctgcgcgtcg cgcatgtcca tggcctcgat cagcggatcg acgttggggg
     1441 tcttcacata gccggtggcg tcggccgacg gattgttggg atcgaaggtc gagttgaacg
     1501 gcgccttgtc gggctcggcg cgcatcatct tcacgccctt gccgccgcca gcgacagtgg
     1561 cggcctggaa cacaggcgcc tgccggcgat agggatcgcc gcccggggtc ttggacgtgg
     1621 aattggcgtt ggccaggttc tccgcgatga tccgcatgcg cgcctgctgg gcgcgaaggg
     1681 cggagaccgc gatcgactgg gtggtgctgc tggagacggg actgtcagcc atctagaacg
     1741 cgctcctcat catccgccgg gcttccggac agccatcttc agcatgctga gcgattgctg
     1801 gtagaaaccg atggccgcgt cgtagtccat gcgagcctgg gtcagcttga ccatctcgtc
     1861 ttcaagaacc acgccattgc cgtcgagggt gacctcggag tccgcggcct tcacggcctt
     1921 catgccgctc gatcctgtgc ccttcggctg catatggccg ggttgggtga ccgccatggt
     1981 cccggccggc gtggccgccg ccgcgccgct ggcggcctgc acctgggcct ggaaactgaa
     2041 ggccttgagg tcgcgcgcct tgtagccggg cgtattcgca ttggcgacgt tctcggcgat
     2101 cacccgctgg cggtcggaga gataccccaa ccggctcttc agcatcgcga agaggggaat
     2161 gtcgccaagt tccatggccg ccatggtgaa taaacagggt taacccggac ttaagggact
     2221 cagacgtttc ctgcagcttg aactcacacc cgagccgcag aagcgcccat gcaaccctcc
     2281 gacttcctcc gagccctgtt cgccctcgtc ctgacgctgg gcctgatcgg cctgtgcgcc
     2341 gtcgcccttc ggcgcttcgg gcccgaggcg ctcgctcgct tcgcctcgcc gaagaaggcg
     2401 cgccggctgg ccgtggtgga aagcctggtg ctggatccgg cccggcggct ggtcatcgtc
     2461 gcctgcgacg gcaaggagcg cctgctgctg ctgggcgagg gccaactggt ctcaccgttg
     2521 gatctgccga agggacgttc ctgatgcgcg agctcttcaa ggccatccgc gacctccccg
     2581 ccgcggaatg gcgccgcgcc ttcggtctgg cggtcctgac caccgtcgcc tgcctgatct
     2641 ttccagccgt cgcggccgcc caggcgctga acatcaacct cggcaccggc gcaggtctga
     2701 ccgagcgcgt cgtacagctg atcgggctga tgaccgtcct gtcgctggcg ccctccatcg
     2761 tcatcatgac cacctccttc acccggatcg tggtggtgct gagcctgctg cgaacggcgc
     2821 tgggcctgca gcagagcccg cccaattcgg tgatcatctc gctgtcgatc ttcctgacgg
     2881 ccatcgtcat gggcccaacc ctgcagaagt cctacgacga cggcatcaag ccgctgatgg
     2941 atcagcagat cgagctgccc caggctttcg acgcggcggg cgggccgttg aagaccttca
     3001 tgctgagcca ggtggaccgc gaggacctgg cgctgttcat cacgctgtcg aagatcccca
     3061 ggcccgcgac ggctcaggac attccgatcc gggtggtgac gcccgccttc atgatctccg
     3121 agctgaagcg cgccttcgag atcggcttcc tgctcttcgt ccccttcctg gtcatagacc
     3181 tggtggtggc cagcgtcctg atgagcatgg ggatgatgat gctgccccct gtggtggtca
     3241 gcctgccctt caagctgatc ttcttcgtgc tcgtcgacgg ctggcggctg gtggccggca
     3301 gcctcgtgca aagcttccag cacggcgcgg gaacctaagg gccgcgtatt cgtcggggtg
     3361 gtcggcgcga gatcggccgc aacgtcttcg ccacagccgc gtttggcttc gtaggcgcgc
     3421 gccccgaaag ggcgcggttg gccgcgcgcc agcttgagac cccaagctga accgcagcgg
     3481 cgggagagga ctatgaaaaa gctcatcgcc accgtgacgg tggtcggact gttcgcgttt
     3541 gggcccgcgg ccctggcgca ggacgagcac aagcgagccg acaatcccgc ccagggcgcc
     3601 cgccaggcgg ggcccggcgc cgcagcgggc catgcgccag cgcgagcgtc cggcggacag
     3661 ggtggcggcg gccagggtgg tggcggccac agcggcgggc caagcgagcg cgcgagcggc
     3721 cgctcgcaag ggcaaggcgc tcaggctcaa tcccctccga ggcaggcctc acaaaggcag
     3781 gacacgcaaa gacaggtcgc cccaaggcaa gcccccaccg agcgcgtccg cagcgagccg
     3841 gcgattggtc gcggaaccag cggcgcggtc aacgcgccgg cctccggatc gcgcaacatc
     3901 caggcgcaag gccgcacatc caacaccggc ccggcgcgtc gacccggcga tttcgcggcc
     3961 ctgcgcggca atgtgcaggc ctcacgccat ttccaggcgg gcgcctaccg gccgccgcaa
     4021 ggcttccagt cgcgtcactg gggctatggc gaccggctgc cccgcgccta tttcgcccgc
     4081 aactactggc tcaccaactt cctgatctat ggcctgctgt cgccgccgcc ggggctggtc
     4141 tgggtccgcg tgggacccga cgccctgctc atcgacgaat actccggcga agtcatccgc
     4201 gtggactacg gcgtcttcta ctaggcgcgc ctggtctcag cccggcccgg cggaaggctt
     4261 gaacttgccg cccagggcgc actgcgcccg gccgcgttca acgctgacgg tggcgagttg
     4321 gccgacgccc ggttcgaaga aggtttcgct cttgccggcc ttcacccgaa tggcggctgg
     4381 gccggtgaac tggcagaccg gatgggtcag gaaacccagc gcgccgcggt tgtcggcgtc
     4441 gctgcacatc acatggccga actggcgggt gaaggtcacc tcgtcataga gcgtcgcccg
     4501 ctcgccggcc ggatagccct tggcggcata ggctgtggcg gagatcgccg ggcaacccgg
     4561 aaggtcaccg gcccagccct gggccagttc cttctgacga tggtagcccg cgttgacggc
     4621 caggagcgcg ccgatgatcg ccagggcggg cagcagaccc agccagacac cttttagcga
     4681 tcttgatttc ccgcgctgac caaagtcgag cggcatgggt ggctcctgac cgaccctctc
     4741 gatcggaggg tgcggtcaag agattttacg cttgtaatct ccatgtcaag cggaggctac
     4801 aggtccggcg tctcgccctt ggcgcgggcc atccggcggc tgggcatcgc cttggcgagt
     4861 tccgccgcgt cgagcttgcc gtcgtggttg gtgtcgaggt cggcgaacct ggcgcgcaga
     4921 taggccagcg gacccttcag ctcgttcggc tcgatgaagc cgtcgaggtt ggagtccagc
     4981 gagcccatca tttgcgaggc gaacagcttc tgctgcaggt cgttgcgcac gttggtcacg
     5041 gtctcgtcgg cccagcggta gttgacccgg aagtacatca tctcgtcggg ggtctgctcg
     5101 ccccaggtga cgttgcgctt cgggtccgga ttggccggat tgtgctcgga gttgtcgtag
     5161 acccaggtgg cgaccagctt ggtcccggcc ttcaccagga tcggcttcac cggatcgtag
     5221 tcgcgctgcc agttgaagtc gtacttcggc aggctcagca gcatggcttc cttgccatcg
     5281 ggcgtcaccg ccttcagctc gacgtggaag ccgcggtaat gcgagtgcgg atagagcgtg
     5341 tagaggtagg cgtcggccgg gaaggtcagg taggcgatct cctggtgacg cgcctcgccc
     5401 gcaggaatgt agagggcgaa ggtcgagatc acggtcgagc gcttaatgta ctcgggcgcg
     5461 gtcttcagcg tgtagaagcc gacctcggtc ttatcgaccg tttccttgcc cattgtggtg
     5521 tagtgcatct ggaagtgcag cttgccgcca gccggcaccg gggcgccgga gccgtccgcc
     5581 atgacctgcg gctgagcgcc cggggtatag gagccaacag agccgcccgg gatcgcggcg
     5641 gccggctggt tcgggtctgg gatgtggttg gagaccacgt ggtgcagcac tcgccggtcg
     5701 ccgggcttca tggcgatcgc cttcagccag gtgttctcct tgaacggatt gtcgaccacc
     5761 tggttctggt actcgaccag gcccgtagcc ggcaccttga acgtgggcag atcgacgatg
     5821 acgtccggct tgccgagttc gggcggccat tccggggcga ccttgttggc gttggccagc
     5881 agcgggtcgg gaccattgcc gcgcggtgcc ccggcctcga tccagtggac cagcgtcttg
     5941 gtctggtcgg ccgtcaggcc ctggtcgttc ttgaacaccc cgatgtgcgg gtcggcgaag
     6001 tagggcggca tgcgatgggt gcgcaccgtc tcgcggatca tcggggcgaa tcccttgacc
     6061 agctcatagc tgttcatcgc gaaggggcca atgccgccgg cgatgtggca ggagacgcac
     6121 ttgtcctgaa ggatcggcgc gacgtccttg gaataggaga tgttggcgaa atcggccgca
     6181 tgcgcttccg ccgggaaggc gatcgtcttg ccggcggtcg tggagacgcg ggtgatctgc
     6241 ggggtctggc cggccagcag ggcgtcgacg gccgcgctgg cgtgaccgtc cagcgggccg
     6301 cggtaggcca cggtccaggt cttggggttg atcacgaaga cctccccttc ccgctgcacc
     6361 ttgagctgtt cgcccaccag ctgctgttcg tccatcagga cggggacggt gaggctttcc
     6421 tgggcggccg tggcggcgac ggcgtcgcgg ctgtcggcga gattggagtc cagcgcccag
     6481 accaccacgc ccctggcctt gtaggcgtcg gagagcttct gcagctcggc gtctgcggta
     6541 tgcgagaacg ccgtgccgtt cgaccggctc atgatcacga tcgccggcgt gtagccgaaa
     6601 tagtgcaggt gctgcgccag ccgcgtgtgg tcggtgagct ggaagtcgtc gacgtgctgc
     6661 ggcgtcgcac tgggcgtatc ggcggcgatc ccggccggcg cggcgaggcc tgcgaacgcc
     6721 aggccagcga tcgcggcggt ggccaaaaga actcgtttca tggcgtcagc tcccagctta
     6781 gcgcggtccg gataccaccg tttccgtgca ccaatgttgc aacggccggg caaagttcgc
     6841 gccggtgaag gtctcccagg atcgcgtcag aaatcacaac ctattgataa ttaggcattt
     6901 ttcaaaaaga tccgccggtc cattgtcgac cgccgcgcag gcaagagtct gggcccattc
     6961 ggacgccagg tcaaaacctc gctgtcgccg tcagcccttg gcggctccgg tcgccgcctg
     7021 ggcctgtttg gcggggccgg caggcttgat cggcgcggcc ggcggcgtca cgggcttgcc
     7081 ggttccgacc ggcgccggac gggtcttgaa gcggaccttc atcttgtcca cccagccggc
     7141 gaaggcttcg ttgtcggcgc tgacccggcc gaagtcggcg acgctgaggc gattggtgga
     7201 gacgccggtc agcgcgatgc gcagcgcctc gggattgtga gcggcgtcga agaagccctt
     7261 gtactggctc gagaggcggg tgagcgccgc gtcatcgcca gccaggctgt aggccacgcc
     7321 agcgcgcagc agcttgccct cttcgtcggc ggagagcgcg gcgggattct tccagcgagc
     7381 gcccaacgcc ttttcgaact gcggtccggc cttggcccaa tccttctgtt tccaggtgat
     7441 ctcggcgcgc aggtcctggc cctcctgggt ggtgtccttc tcgatgatct cgagcgcggc
     7501 gtcatagcgg ccgacgccgg cccatgcgcg cgactcgatc agccgacgct cggcgttgag
     7561 cgcgttcggc agcaccgtgg tgcgcgagcc gttgatcgcc tcgatcgcct tctccggctt
     7621 cttgtccatc aggtagatga ccgccaggtc cgtggccacc tgggcgcgcg gcacgccgtc
     7681 cagccggttg tcggcctggt acttgaggag ctcggcggcc tggtccagca ggtcgacgtc
     7741 caccaggcga cgcaccagct tgcggaccat caggtcgccg tcggagccga tcggggtcag
     7801 ttccttgaag tcctggaaca gcgccagggc ctgcaccggc tccaggccgt cggc
//
LOCUS       DATAJL010000262         5492 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_30030,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000262 DATAJL010000000
VERSION     DATAJL010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5492
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30030"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VHN39_05050"
     CDS             complement(<1..324)
                     /locus_tag="VHN39_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815734.1"
                     /translation="MRFARWVFTAAGIYGLVLLTPFLFLERQIAAPAAQLPHAEYFYG
                     FALVAISCQVLFLLIGRDPVRLRPAMIAGVIEKWPFGFLVLFLWSQGRAPMPVVAFAC
                     IDIVWG"
     gene            complement(338..973)
                     /locus_tag="VHN39_05055"
     CDS             complement(338..973)
                     /locus_tag="VHN39_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2815735.1"
                     /translation="MSVAATTPRRSARKAKGDGHLRRAEILEAAERIFVAEGYEGATI
                     RKIADEVGVSSTALYMHFQDKGCILIEICERTLRLLYERNREIAAKPLDAVVRVKMML
                     DAYMRWGMEHPNAYQLVYSGRPLASVGEIPEGTRDLSTQCYEIFRNVVTEIAAAGRLR
                     TGTAESAAQTLWMCCHGVVTLLASRPNFGWAERDELIQVTLDGLLNGLVVD"
     gene            1170..2045
                     /locus_tag="VHN39_05060"
     CDS             1170..2045
                     /locus_tag="VHN39_05060"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2815736.1"
                     /translation="MRTRGWADYGLLDSGHGRKLERYGRFTVVRPEPQCLWAPALPAE
                     VWDAADAVFDPTDEEDAGRWKLKGAPPDTWPLAWGDVTFNGRFTSFRHLAFFPEQAAN
                     WEWLDAAVRGAGLSADGGQPRVLNLFGYTGVASLVMAAAGAAVTHVDASKRAVQWARE
                     NAELSGLAERPIRWITEDARKYVAREVRRGSKYEGIILDPPKYGRGPDGEVWRLFENL
                     PELAGLCAELLSENAKFLVLNAYSERISGAALSGLLADKLKGRGGTIEWGELALVQED
                     GAREIGMSFFARWQA"
     gene            2042..2830
                     /locus_tag="VHN39_05065"
     CDS             2042..2830
                     /locus_tag="VHN39_05065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX2815737.1"
                     /translation="MTSRVVTSLTNPTVKAVRALHLRKVRDETGLFVAEGLKAVTEGI
                     ETGHIPRILMHGAEGPDHPLLRLAIAATLARSGEVIEVTQEILAKVSRRDNPQAVVGV
                     FEQVFRPLSALEPQAAKVWVALHRVRDPGNLGTIVRTADAAGCGGVILVGECCDPYSV
                     EAVRATMGSIFAVPLTKASEPEFAAWRNDWPGSVVGTLLSAEIDHRQADYARPVLILM
                     GNEQQGLPSDMAALCDVNVKIPMRGRADSLNLSVATGIMIYAAS"
     gene            complement(2838..3176)
                     /locus_tag="VHN39_05070"
     CDS             complement(2838..3176)
                     /locus_tag="VHN39_05070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815738.1"
                     /translation="MRFAILAAAAALALAVGAIAAPDPGAGVTYGNNNIQPQPAPYSY
                     QVDLGSPGMRWNTAATSKEFKMACAADRETFCKGRISAGAVWECIRIRRSKLSTPCRE
                     ATYKVERAFD"
     gene            complement(3189..3527)
                     /locus_tag="VHN39_05075"
     CDS             complement(3189..3527)
                     /locus_tag="VHN39_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815739.1"
                     /translation="MKLAPVAIAIALALTGAAAAVAQSSQVPNDPGPGTNSAPTANDP
                     AYARSQIADMASASQQFRLACAADRETFCKDRKSKDDVLECIKIRRSKLTGSCRAAWD
                     NLVMASEGRL"
     gene            complement(3540..3977)
                     /locus_tag="VHN39_05080"
     CDS             complement(3540..3977)
                     /locus_tag="VHN39_05080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815740.1"
                     /translation="MKLPVLATLAVLALAGAAAAQVIQGTERGIIPQAGFGPDPVQPL
                     GSHWTNPQLWDGYDDPNRPTDRNLSPLPSGLDTRMRQQVADGLKIAVPQMRQACAADR
                     QSLCADKTSNLAADRCLEYHRLKLSKPCHQAWDKLTMAAEGRL"
     gene            4220..4696
                     /locus_tag="VHN39_05085"
     CDS             4220..4696
                     /locus_tag="VHN39_05085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815741.1"
                     /translation="MRKTGLLTLILAAARPGRRGPPTAPQRWTRVVTTAGFSLDQPLG
                     WMSIATAADQLDIVSRGCRQPGVVICDGEARITVRSESIVAKPKVLKSRACWSLEEQL
                     SEADEGPRHRSQTSVLTCDIGARRFLIVERHWKGDKRSASYGRIAIRMAKSLRYPG"
     gene            complement(4706..>5492)
                     /locus_tag="VHN39_05090"
     CDS             complement(4706..>5492)
                     /locus_tag="VHN39_05090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent helicase C-terminal
                     domain-containing protein"
                     /protein_id="HEX2815742.1"
                     /translation="RDRILLAAPLDEAELLTAFAHQLITEDRLEESGAGRLRSLRLTR
                     LGRLVVRETVDDNPDPALIAGALADRVRAEGVASLPWGESAVGLRQRLAFLRARDHAW
                     PELSDAALVERLDEWLAPLLTGVRSLAALKPDALDAALRTLIPWDLQRRLDAEAPARW
                     TAPTGNSFAIDYAAEAGPRVDVRVQEVFGSGVHPTVAGVPLTFSLLSPGHKPIQTTKD
                     LPGFWKGSWKDVRSDMRGRYPKHLWPEDPAAAEPTARAKPRGT"
BASE COUNT          860 a         1784 c         2000 g          848 t
ORIGIN      
        1 cccccagacg atgtcgatgc aggcgaacgc gaccacgggc atcggcgcgc ggccctggct
       61 ccacaggaac agcacgagaa agccgaacgg ccacttctcg atgacgccgg cgatcatggc
      121 ggggcgcagg cggaccgggt cgcggccgat cagcaggaac agcacctggc aggagatggc
      181 caccagagcg aagccgtaga aatactccgc gtgcggaagt tgcgcggccg gcgcggcgat
      241 ctggcgctcc aggaacagga acggcgtcag gaggacgagg ccgtagatcc cggcggcggt
      301 gaacacccat ctggcgaagc gcatcggcag gcgggtccta gtcgaccacc aggccgttca
      361 gcaagccgtc gagggtgacc tggatcagct cgtcgcgttc ggcccagccg aagttggggc
      421 gcgacgccag cagcgtcacc acgccgtggc agcacatcca cagcgtctgg gccgcgctct
      481 ccgcggtgcc ggtgcgcaga cgcccggcgg cggcgatctc ggtcaccaca ttgcggaaga
      541 tttcgtagca ctgggtggag aggtcgcggg tgccctcggg aatctcgccc accgaggcca
      601 gcggccggcc ggaatagacc agctgatagg cgttgggatg ctccatcccc cagcgcatgt
      661 aagcgtcgag catcatcttc acccggacca ccgcatcgag cggcttggcg gcgatctcgc
      721 ggttgcgttc gtagagcagg cgcagcgtcc gctcgcagat ctcgatcagg atgcagccct
      781 tgtcctggaa gtgcatgtag agggctgtgg aagagacccc gacctcgtcg gcgatcttgc
      841 ggatggtggc gccttcgtag ccttcggcga cgaagattcg ctcggcggcc tcaagaatct
      901 ccgcccggcg gaggtggccg tcccccttgg ccttgcgggc ggagcggcgg ggcgtggtgg
      961 ctgcgaccga caagctgact ctatcccccg gttcccgttc cgctacggga gcccaattcc
     1021 gtcccggtga caagtccgcg ttacaggtct gcaatcctca attgacgccc ccgttcttgc
     1081 gtatgggttc tggacggaac cggggccgac cgcgtaagcg cggacgggtg agcgccaccg
     1141 aacccaaggt cgccgagctg cccagcgtga tgcgcacgcg gggctgggct gactatgggc
     1201 tgttggactc cgggcacggg cggaagctgg agcgctatgg ccgcttcacc gtggtgcggc
     1261 cggaacccca gtgcctgtgg gccccggccc tgcccgccga ggtgtgggac gcggcagacg
     1321 cggtgttcga tcccaccgac gaggaagacg ccggacgctg gaagctaaag ggcgcccctc
     1381 ccgacacctg gccgctggcc tggggcgatg tgacgttcaa cggccggttc accagcttcc
     1441 ggcacctggc cttcttcccc gagcaggcgg cgaactggga atggctggac gccgccgtgc
     1501 gtggggccgg actgtctgct gacggggggc agcctcgcgt gctgaacctc ttcggctata
     1561 ccggcgtcgc gagcctggtg atggcggcgg caggcgcggc cgtcacccat gtggacgcct
     1621 caaagcgggc cgtgcagtgg gcgcgggaga acgcagagct ttccggcctc gccgagcggc
     1681 cgatccgctg gatcaccgag gatgcgcgca aatacgtggc ccgcgaggtg cggcggggct
     1741 cgaagtacga ggggatcatc ctcgaccccc cgaaatacgg ccgcgggccg gacggcgagg
     1801 tctggaggct gttcgagaac ctgcctgagc ttgccggcct atgcgccgaa cttctttcgg
     1861 aaaatgccaa attcctggtg ctgaacgcct attccgagcg gatcagcggg gcggcgctgt
     1921 cgggcctctt ggccgacaag ctgaagggcc gcggcgggac catcgaatgg ggcgaactgg
     1981 cgctggtgca ggaagacggc gcgcgcgaga tcgggatgag cttctttgcc aggtggcagg
     2041 cgtgacgagc cgcgtcgtca cctctctgac caaccctacg gtgaaggccg tccgcgcgct
     2101 ccacctgcgc aaggtacgcg acgagaccgg cctgttcgtc gccgaggggt tgaaggcggt
     2161 caccgagggc atcgagacgg gccacatccc ccgtatcctg atgcacggcg cggaagggcc
     2221 ggaccatccg ctgctgcggc tggctatcgc cgccaccctc gcccgcagcg gcgaggtcat
     2281 cgaagtcacg caggagattc tggccaaggt ctcgcggcgc gataaccctc aggccgtggt
     2341 cggcgtgttc gagcaggtgt tccggccgct gtcggcgctg gaaccgcagg cggccaaggt
     2401 ctgggtggct ctgcaccggg tgcgcgatcc ggggaatctg gggaccatcg tgcgcaccgc
     2461 cgacgcggcg ggttgtggcg gggtgatcct ggtgggcgag tgctgcgatc cttattcggt
     2521 ggaggcggtg cgcgcgacca tgggctcgat cttcgccgtg ccgctcacca aggcgagcga
     2581 gccggagttc gccgcctggc gcaacgactg gccgggatcg gtggtgggca cgctgctctc
     2641 cgccgagatc gaccaccgcc aggccgacta tgcgcgcccg gttctgatcc tgatgggcaa
     2701 cgaacagcag ggcctgccga gcgacatggc cgcgctctgc gacgtgaacg tgaaaatccc
     2761 catgcgcggc cgggccgaca gcctgaacct gtcggtggcc accgggatca tgatctacgc
     2821 ggcgagttga agccctctca gtcgaacgcc ctttcgacct tgtaggtcgc ttcccggcag
     2881 ggggtgctga gcttggaacg gcggatccgg atgcactccc agacggctcc ggcgctgatc
     2941 cggcccttgc agaaggtctc gcggtcggcg gcgcaagcca ttttgaactc tttggacgtc
     3001 gcggcggtgt tccaccgcat gccaggggag cccagatcaa cctgatagct gtagggcgca
     3061 ggctgcggtt ggatattgtt gttgccatag gtcacgccgg cccctgggtc aggggcggcg
     3121 atggcgccga cagcgagcgc cagagccgcg gcggcggcaa ggatcgcaaa tctcatcccg
     3181 agtctctctc agagccggcc ttcagacgcc atgaccaggt tgtcccaggc cgcacggcag
     3241 gagccagtca acttcgagcg gcggatcttg atgcactcca ggacgtcatc cttgctcttg
     3301 cggtccttgc agaaggtctc ccggtcggcg gcgcaggcca gcctgaactg ctgggacgcg
     3361 ctggccatgt cggcgatctg gctcctggca taggcagggt cgttcgccgt gggggcgctg
     3421 ttggtcccag ggcccgggtc attcgggacc tggctggact gggccacggc ggcggcggcc
     3481 cctgtcaagg ccagggcgat ggcgatggcg acgggcgcga gcttcatctc aggtctcctt
     3541 cagagtcggc cttcagccgc catcgtcagc ttgtcccagg cttggtggca cggcttgctg
     3601 agcttgagcc ggtggtattc gaggcagcgg tcggcggcga ggttgctggt cttgtcggcg
     3661 cagagcgact ggcggtcggc cgcgcaggcc tggcgcatct ggggtacggc gatcttcagc
     3721 ccgtcagcca cctgttgtct catgcgggtg tccaggccac tgggcagcgg cgagaggttg
     3781 cgatcggtgg ggcgattggg gtcgtcgtag ccgtcccaca gctgcggatt ggtccagtgc
     3841 gagccgagcg gttggaccgg gtctggcccg aagcccgcct ggggtatgat tccccgctcc
     3901 gtgccctgga tcacctgggc ggccgccgcg ccggccaggg ccaggaccgc gagtgtggcc
     3961 agaacgggga gcttcatggg caggtctccg gggacgaggc agcggtcagg atcggctcct
     4021 cagataccca cattatttca ggatcataag aatctcataa agacccggcg gcgagagccg
     4081 gcgccggcgc gcacgcaaat caaacatcct ttaccttgcg ctgcgaaggg aacggggcga
     4141 actccacgcg gcgggcttcg agcgcctgga cccgctcggg cgataggggc gatattcgat
     4201 gcagcgaccg ggcggaccca tgcgcaagac aggcctcctg acactgatcc tcgccgcggc
     4261 gcggcctggg cgccgaggcc caccgacagc gccgcagcgc tggacccggg tggtgaccac
     4321 cgccggcttt tcgctggacc agcccctggg ctggatgagc atcgccaccg ccgccgacca
     4381 gctggacatc gtcagccgcg gctgtcgcca gccgggcgtg gtgatctgcg acggcgaggc
     4441 ccggatcacc gtccgctcgg aatccatagt cgccaagccc aaggtgctca aatccagggc
     4501 ctgctggtcg ctggaggaac agctctcgga ggccgacgag ggcccgcgcc accgcagcca
     4561 gaccagcgtg ctcacctgcg atatcggcgc gcggcggttc ctgatcgtcg agcgccactg
     4621 gaaaggcgac aagcgctcgg cgagctatgg ccgtatcgcc atccgcatgg ccaagagcct
     4681 gcgctatccg gggtagtccg cggcgctagg tcccgcgcgg cttggcccgc gccgtaggct
     4741 ccgccgccgc cgggtcctcg ggccacaggt gcttgggata gcggccgcgc atgtcggagc
     4801 gcacgtcctt ccaggagcct ttccagaagc ccggcaggtc cttggtcgtc tggatcggct
     4861 tatgccccgg cgagagcagg gagaaggtca gcggaacgcc ggcgaccgtg ggatggacac
     4921 ctgagccgaa gacctcctgc acgcggacgt ccacacgcgg accggcctcg gcggcgtagt
     4981 cgatggcgaa gctgttgccg gtgggcgccg tccagcgggc gggcgcctcg gcgtccaggc
     5041 ggcgctgcag gtcccagggg atcagggtgc ggagcgcggc gtcgagggcg tcaggcttga
     5101 gggccgccag ggatcggacg ccggtcagga gcggcgcgag ccactcatcc aggcgctcga
     5161 ccagcgcggc gtcggaaagt tcaggccagg cgtggtcgcg ggcgcgcagg aaggccaggc
     5221 gttggcgcag gcccacggcg ctctcgcccc agggcagact cgcgacgccc tcggcgcgga
     5281 cgcggtcggc cagggcgccg gcgatcaggg ccgggtcggg gttgtcgtcc acggtctcac
     5341 ggaccacgag gcggccgagg cgggtgaggc gtaggctgcg cagccgccct gccccgctct
     5401 cctccaggcg gtcctcggta ataagctgat gagcgaaggc ggtgagcaat tcggcctcgt
     5461 ccaggggcgc ggccagcagg atacggtcgc gg
//
LOCUS       DATAJL010000263         3856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17212,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000263 DATAJL010000000
VERSION     DATAJL010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3856
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17212"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..310
                     /locus_tag="VHN39_05095"
     CDS             <1..310
                     /locus_tag="VHN39_05095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HEX2815743.1"
                     /translation="RAAEEGVQPGPIAVTEPAERELVLTLDAFEAALAEAYDKKAPNA
                     VAEHAYRLSQAFSRFYAACPILQAEPATRASRLALAQTTLAQLERALDVLGIAVPERM
                     "
     gene            complement(331..1305)
                     /locus_tag="VHN39_05100"
     CDS             complement(331..1305)
                     /locus_tag="VHN39_05100"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HEX2815744.1"
                     /translation="MKRWIRIWGIRSGAAALLGVALAFTAGAQPRQAALPDPEANIVE
                     ELVVTSRHPAPAWWRMERGGSTVWILGVLDVPLPKDVTWRKAELDQRLEGAGSLITAP
                     RLHAGLEDIFGLFKIFGMMRTKDPLEDGLDPALRARFVADREKLGKGPEPYTHWRPMI
                     AGQILLRDSRPAAVADVGRQVRAEAARRGVAVHAAGEYDLIPFAKTALGSMTPQSEGA
                     CLSAALDDAEAGEAAYRRAAVGWTRGDVGAALKAPRQFDRCLLLMAGGPELWRRSTDD
                     LAEAIVKGLETPGHSVATVSLRRLLAKDGLVDTLKARGLRVIGPNDPE"
     gene            complement(1393..1806)
                     /locus_tag="VHN39_05105"
     CDS             complement(1393..1806)
                     /locus_tag="VHN39_05105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815745.1"
                     /translation="MSSRMTNSRRALVDHFEPDDLTDPKAQKQLRGQLEQIDYTAYAA
                     NKEVLAAVIGRADALKFAHLGLATAQARARWAALALAATEGGRAPSAQQIEEIARLRM
                     AFEELSEVYDALRRMVERGYLSYAATDVTARAPGG"
     gene            complement(1928..2227)
                     /locus_tag="VHN39_05110"
     CDS             complement(1928..2227)
                     /locus_tag="VHN39_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815746.1"
                     /translation="MSMRFTSVLIIGAAFSGSLLLSAAQAADRDFCRNYAEAALRQTR
                     AAHEHGRCHEAIRDDANRWSTDFRVHMDWCKTAKLEDADREREARKHVLDECTHR"
     gene            2418..3413
                     /locus_tag="VHN39_05115"
     CDS             2418..3413
                     /locus_tag="VHN39_05115"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retroviral-like aspartic protease family
                     protein"
                     /protein_id="HEX2815747.1"
                     /translation="MKIFTLAALAAAALLAPLQASAACHLVTAEVPVTMQGLRPLVAA
                     RIGGTPVKLLLDSGAFGSSLTATFAAQEKLQPMAAKSINSLVPSSASTLTSGVRGHEI
                     TTGIVIAPTFEFGGSVFPNVKFLTIRDLGGGASGLVGQNLLHTSDNEYDLKGGMLRLV
                     RPQDCETTQLAYWATPGMTYSMVPLENTGHTSGHTMVIITVNGQPMRAYLDTGADTSF
                     ITAHAAAKAGVKTSDEGVKRAGDSHGLDGDVKTWVATFGSVKIGDEEIKNAKLAIGES
                     VANDFDVLIGADFFMAHHVYVANSQGKLYFTYSGGPVFRTAAPQAAAASGDPQPH"
     gene            complement(3450..>3856)
                     /locus_tag="VHN39_05120"
     CDS             complement(3450..>3856)
                     /locus_tag="VHN39_05120"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX2815748.1"
                     /translation="FGVPPRNSIEENVGTLTPLTIPGARTITTGELAADLRANRPFLL
                     VDVLDAPHAGLPGARRYPGVGLANPPADVLQLLDKDTRGDKAYPVVFYCQGPQCWESY
                     NAALRARDGGYANLYWYRGGLEAWSMAGLPES"
BASE COUNT          584 a         1475 c         1233 g          564 t
ORIGIN      
        1 ccgcgccgcc gaggagggtg tccagcccgg ccccatcgcc gtcaccgaac cggccgagcg
       61 ggaactcgtg ctcaccctcg acgccttcga agccgccctc gccgaggcct atgacaagaa
      121 ggcccccaac gccgtggccg agcacgccta tcgcctctct caggccttct ccaggttcta
      181 cgccgcctgc ccgatcctgc aggccgagcc ggcgacccgc gcctcacgcc tggccctggc
      241 ccagaccacg ctggcccagc tcgaacgcgc cctcgacgtc ctgggcatcg ccgtgcccga
      301 aaggatgtag gcgggcggat gtagcgcgcc tcactccgga tcgttcggcc cgatcaccct
      361 cagcccgcgc gccttcaagg tgtcgaccag cccgtccttg gccaggagcc gcctgagcga
      421 caccgtcgcc accgagtgcc ccggcgtctc cagacccttg acgatcgcct cggccaggtc
      481 gtcggtgctg cggcgccaca gctccggccc gccggccatc agcagcaggc agcggtcgaa
      541 ctgcctgggc gccttcaggg ccgcgcccac atcgccccgc gtccagccca cggccgcgcg
      601 ccgataggcc gcctcgcccg cctcggcgtc gtctagcgcc gccgacaggc acgcgccctc
      661 cgactgcggg gtcatcgaac ccagggctgt cttggcaaag gggatcaggt cgtattcccc
      721 ggccgcatgc acggccacgc cgcgccgcgc cgcctccgcg cgcacctgcc ggcccacgtc
      781 ggccaccgcc gccggccggg agtcgcgcag caggatctgc ccggcgatca tcggccgcca
      841 gtgcgtgtag ggctccggcc ccttgcccag cttctcccgg tcggccacga accgcgcccg
      901 caaggccgga tcgaggccgt cctccagcgg atccttggtc cgcatcatcc cgaagatctt
      961 gaacagcccg aagatgtcct ccagcccggc gtgcagccga ggcgccgtga tcagcgaccc
     1021 cgcgccctcc agccgctggt ccagctcggc cttgcgccag gtcacgtcct tcggcagggg
     1081 cacgtccagc acccccagga tccagaccgt cgaccctccg cgctccatcc gccaccaggc
     1141 cggcgcggga tggcgcgagg tgaccaccag ctcttcgacg atattggctt ccggatcggg
     1201 cagcgccgcc tgacgcggct gcgccccggc ggtgaacgcc agagcgacgc ccaacagcgc
     1261 ggccgctccg cttctgatcc cccaaatcct gatccaacgc ttcatctggc ctggccccct
     1321 ggcgcggcca cagtcgaagg cgcttgcggc gaaagctggg ccgcgggccc gcatgcgaac
     1381 ctggagggcg acctagccgc ccggcgcccg cgccgtgacg tcggtcgccg cgtagctcag
     1441 gtacccgcgc tcgaccatgc ggcgcagggc gtcatagacc tcgctcagct cctcgaacgc
     1501 catccgcagg cgcgcgatct cctcgatctg ctgggcgctc ggcgccctgc cgccctcggt
     1561 ggccgccagc gccagcgccg cccagcgggc gcgggcctgc gccgtggcca ggcccaggtg
     1621 cgcgaacttc agcgcgtccg cgcgcccgat gacggcggcc agcacctcct tgttcgcggc
     1681 ataggccgtg tagtcgatct gctcgagctg cccgcgcagt tgcttctggg ctttcggatc
     1741 ggtcaggtcg tccggctcga agtgatcgac cagcgcccgt cgtgaattcg tcatccggct
     1801 cgacatggca gaggcctccg tcatctcagg gcagaggacc ctagccgcgc catacctaag
     1861 atttccttgc gaaaatcccg ccgctccccc ggcgcggcgc gcgggggagc cctaggtgag
     1921 ccccgcctca gcggtgcgtg cactcgtcga gcacgtgctt gcgggcctcg cgctcgcggt
     1981 cggcgtcctc gagcttggcg gtcttgcacc agtccatgtg gacgcggaag tccgtgctcc
     2041 agcggttggc gtcgtcgcgg atggcctcgt ggcaacggcc gtgttcatgc gcggccctgg
     2101 tctggcgcaa ggccgcctcg gcatagttcc gacagaaatc ccggtcggcc gcctgggccg
     2161 ccgacagcaa gagcgacccg ctgaacgcgg cgccgatgat caatacggac gtgaagcgca
     2221 tggacatctg atcctcccga tcaatttctg cgagggagtg agcggcgatt tgcggcccac
     2281 ggcaaggttc gccaacccca aacccaagct gaggcacctc gtcacggggg gatcggaatt
     2341 cccgcccggc ggccctaact accgctcggg ggcgtgactg gttattgttg aaacgacgcg
     2401 gggcccccgg acatctcatg aaaatcttca ccctcgcggc gttggcggcg gccgcgctcc
     2461 tcgccccgct gcaggccagc gccgcctgcc acctggtgac ggccgaggtg ccggtgacca
     2521 tgcagggcct gcgccccctg gtggcggcca ggatcggcgg cacgcccgtc aagctcctgc
     2581 tggattccgg cgcctttggc agctcgctca ccgcgacctt cgccgcgcag gaaaagctgc
     2641 agccgatggc ggccaagtcg attaactccc tggtgcccag ttccgcctcg acgctgacct
     2701 ccggcgtcag ggggcatgag atcacgaccg gcatcgtcat cgcgccgacc ttcgagttcg
     2761 gcggctcggt tttcccgaac gtcaaattcc tcaccatccg cgacctcggc ggcggcgctt
     2821 ccggcctggt gggccagaac ctgctgcaca cctcggacaa cgagtacgac ctgaagggcg
     2881 gcatgctgcg cctggtccgg ccgcaggatt gcgagacgac gcaactggcc tattgggcga
     2941 cgcccggcat gacctattcg atggtcccgc tcgaaaacac gggccacacc agcggccaca
     3001 ccatggtcat catcacggtc aacggccagc cgatgcgcgc ctacctcgac accggcgccg
     3061 acacctcctt catcaccgcc cacgccgccg ccaaggccgg cgtcaagacc agcgatgaag
     3121 gcgtcaagcg ggccggcgac agccacggcc tcgacggcga cgtcaagacc tgggtcgcca
     3181 ccttcggcag cgtcaagatc ggcgacgagg agatcaagaa cgccaagctg gccatcggcg
     3241 aatccgtggc caacgacttc gacgtcctga tcggcgccga cttcttcatg gcccaccacg
     3301 tctacgtcgc caacagccag ggcaagctct acttcaccta ctccggcggc ccggtgttcc
     3361 ggaccgcggc cccgcaggcg gcggcggcga gcggagaccc gcagccccac taggccgctc
     3421 atccccacgc aggcgctcgc gcctgctcgt caggattccg gcagtcccgc catggaccag
     3481 gcctccaggc ccccgcggta ccaatagagg ttggcatagc cgccatcccg cgccctgagc
     3541 gcggcgttgt aggattccca gcactgcggg ccctgacaat agaacaccac gggataggcc
     3601 ttgtcgccgc gggtgtcctt gtccagcagc tgcaggacat cggcgggcgg gttcgccagg
     3661 ccgacgccgg gatagcggcg cgcgccgggc agtcccgcat gcggcgcatc gagcacgtcg
     3721 accagcagga acggccggtt ggcgcgaaga tcggcggcca gttccccggt ggtgatggtc
     3781 cgcgcgccgg ggatggtcag cggggtcagc gtcccgacat tctcctcgat gctgttgcgc
     3841 ggcggcacgc cgaaat
//
LOCUS       DATAJL010000264         2926 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105055,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000264 DATAJL010000000
VERSION     DATAJL010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105055"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..988)
                     /locus_tag="VHN39_05125"
     CDS             complement(65..988)
                     /locus_tag="VHN39_05125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEX2815749.1"
                     /translation="MRAIQWDPIYWLRVSLLTLGRALTRLWGRDVMLYTGGVSFFSLL
                     AIFPALAIMITLYSLLSDPAQAAKVGELLARVIPAGARDIVQSELMRLAHAPHVAMTT
                     QSAFALLIGLYAAHRGFKAMLAGLSFIHDEDEPMGFVGFNLMALLVLVATFAMLAVVS
                     AVFFGLRVMGSAFDLKPLRGVSWLYSEWTWSTFLMTLGMSLIYRWAMSRRPVNWRASL
                     LGGFSAAVLCLFASWATAFYVEQIAHLGATYGSIATVVIFLIWLSWNVNAIFFGGALA
                     TEVEISIDAHAARSILPDLRGAEPMASPPES"
     gene            1162..1602
                     /locus_tag="VHN39_05130"
     CDS             1162..1602
                     /locus_tag="VHN39_05130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX2815750.1"
                     /translation="MRVMVIVKANPESEAGTLPTPEYIERMGAYNDELIAAGVMLDGG
                     GLRPSAQGARVSLRRGKATVIDGPFAETKELLGGYWIWQVASLQEAIDWAKKAPTEGD
                     REFNLELRPFMEPEDFAEVASPELIAQEQGWRDEQARSAPKAPA"
     gene            complement(1778..2923)
                     /locus_tag="VHN39_05135"
     CDS             complement(1778..2923)
                     /locus_tag="VHN39_05135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEX2815751.1"
                     /translation="MGHGPLSGLKVLEFAGIGPGPFCGMLLSDLGADVVRIDRKGGRG
                     GAPSDITARGRRSVALDLKSPGAIEACLKLMEKADAIIEGFRPGVMERLGLSPEVALK
                     RNPKLVFGRMTGWGQTGPYANAAGHDMNYIAITGALHAIGTAEKPVPPLNLVGDFGGG
                     ALYLAFGLLAGVIQARETGQGQVIDCAMSDGAASLMAMFYGFKASGAWKEERRQNLLD
                     GGAHFYDTYQCADGKWISIGSIEPQFYALLLEKTGITDPDFARQMDRSIWPQLREKLA
                     KAIAGKTQAQWCAIMDGTDVCFAPVLDLDEAPKHPHNAARQTFVEVAGVIQPAPAPRF
                     SATPGAIQGPPPAIGAHDREALLDWGFTAGEIAALTGSDTQVKDTVS"
BASE COUNT          525 a          970 c         1008 g          423 t
ORIGIN      
        1 gtgccgcacc tcgccgccga gatcggggcc gaaatcctgg cgcgcgacga gttcgacggc
       61 ggcttcagct ttctggtggc gaagccatag gctccgcgcc ccgcaggtca ggcaggatgg
      121 accgcgccgc gtgggcatcg atggagatct ccacctcggt cgccagcgcg ccgccgaaga
      181 agatcgcatt cacgttccac gacagccaga tcaggaagat cacgacggtg gcgatcgatc
      241 cgtaggtcgc gcccagatgg gcgatctgct ccacgtagaa ggcggtggcc caggaggcga
      301 acaggcagag caccgcggcg ctgaacccgc ccaggagcga cgccctccag ttcaccggcc
      361 gccgcgacat ggcccagcgg tagatcaggc tcatgcccag ggtcatcaga aacgtcgacc
      421 aggtccattc gctgtagagc caggagacgc cgcgcagggg cttcaggtcg aaggccgagc
      481 ccatgaccct caggccaaag aacaccgccg agacgaccgc cagcatggcg aaggtcgcca
      541 ccagcaccag cagcgccatc aggttgaagc ccacgaaccc catgggctcg tcctcgtcgt
      601 gaatgaacga tagacccgcc agcatggcct tgaagccccg gtgcgccgca tagagcccga
      661 tcagcagggc gaaggcgctt tgggtcgtca tggccacgtg cggggcatgg gcgaggcgca
      721 tcagttccga ctggacgatg tcccgcgctc cggccgggat cacccgggcc aggagttcgc
      781 cgaccttggc cgcctgggct ggatcggaga gcaggctgta gagggtgatc atgatcgcca
      841 gggcgggaaa gatcgccagc aggctgaaga acgacacgcc gcccgtgtag agcatcacgt
      901 cacggcccca gagccgggtc agggcccggc caagagtcag cagcgagacc cgcagccagt
      961 agatcgggtc ccattgaatg gcccgcaagc gcgtgatgaa ttgtgatgcc gccatgcggg
     1021 cggaacctgc tgaggaacgg gccagcgcgc aaggcgccgc cgaagaattc cgctcgacgt
     1081 gtcggcgccg cccggtcttg ctcgtcctaa ggcggaaccc cggcgcgctc gccgggcgtg
     1141 gaatccaggg gagaaaccgc aatgcgggtg atggtgatcg taaaggccaa tccggagtcc
     1201 gaggccggca ccctgccgac gcccgagtac atcgagcgca tgggcgccta caacgacgaa
     1261 ctgatcgccg cgggcgtcat gctcgacggg ggcggcctgc gtccgagcgc ccagggcgcg
     1321 cgcgtcagcc tgcgccgggg caaggcgacc gtcatcgacg gccccttcgc cgaaaccaag
     1381 gagctgctgg gcggctactg gatctggcag gtggcgtcgc tgcaggaggc catcgactgg
     1441 gcgaagaagg ctccgaccga gggcgatcgc gaattcaacc tggaactccg gccgttcatg
     1501 gagccggagg atttcgccga ggtcgcctcg ccggagctga tcgcccagga acagggttgg
     1561 cgcgacgagc aggcccggag cgcgcctaag gcgccggcct gactctgaag ggtgttgagg
     1621 cccaaaaaga aacggcgcgc cacctgttca ggtggcgcgc cgccgatggg cgtgtcgttc
     1681 catcaggtag ctcgccgctt cgagggacgg gagagcgcga cgaacaacct ggggcgacat
     1741 tgtgacttgg cgcctgaacc caacctgaac gtgtccgtca ggaaacggtg tctttgacct
     1801 gggtgtccga cccagtgagg gctgcaatct cgccggccgt gaagccccag tcgagcagag
     1861 cctcgcggtc gtgagccccg atagccggcg gcggcccctg gatcgcgccg ggggtcgcgg
     1921 agaaccgcgg cgccggcgcg ggctggataa ccccggccac ctccacgaag gtctggcgcg
     1981 cggcgttgtg cggatgcttc ggcgcctcgt cgaggtcgag caccggcgcg aaacagacgt
     2041 cggtgccgtc catgatcgcg caccactggg cctgcgtctt gccggcgatg gctttggcga
     2101 gcttctcgcg cagttgcggc cagatcgaac ggtccatctg gcgggcgaag tccggatcgg
     2161 taatgccggt cttttccaac aggagcgcat agaactgcgg ctcgatggag ccgatggaga
     2221 tccatttgcc atcggcgcac tggtaggtgt cgtagaagtg ggcgccgcca tccagcaggt
     2281 tctgccggcg ttcttccttc cacgcgcccg acgccttgaa gccgtagaac atggccatca
     2341 gcgaggcggc cccgtcgctc atggcgcagt cgatcacctg gccctggcca gtctcgcgcg
     2401 cctggatcac cccggccagc aggccgaagg cgaggtagag cgccccgccc ccgaaatcac
     2461 ccactaggtt cagcggcggg accggctttt ccgccgtgcc gatggcatgc agcgcgccgg
     2521 tgatggcgat gtagttcatg tcgtgcccgg cggcgttggc gtaggggccg gtctgccccc
     2581 aaccggtcat ccggccgaac accagctttg gattgcgctt gagcgccacc tcggggctca
     2641 ggcccaggcg ctccatgacg ccgggccgaa agccctcgat gatcgcgtcg gccttttcca
     2701 tcagcttcag acaagcttcg atcgcgccgg gactcttgag atccagggcc acggatcgcc
     2761 ggccgcgcgc ggtaatgtcg ctgggcgcgc cgccgcggcc gcccttgcgg tcgatccgca
     2821 ccacgtcggc gcccagatcg gaaagcagca tgccgcagaa cggtccgggc ccgatgccgg
     2881 cgaactccag gaccttgagg cccgacaacg gtccatgacc catgac
//
LOCUS       DATAJL010000265         1567 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_4313,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000265 DATAJL010000000
VERSION     DATAJL010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1567
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4313"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..225
                     /locus_tag="VHN39_05140"
     CDS             <1..225
                     /locus_tag="VHN39_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815752.1"
                     /translation="VKIGGSGLPGNTAFCGDCGAAIYSCRGDDPPFYWLRTGAIRQRA
                     ELIPMGQGFCDTGMPWAMDLSGVRVIPTDR"
     gene            355..936
                     /locus_tag="VHN39_05145"
     CDS             355..936
                     /locus_tag="VHN39_05145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815753.1"
                     /translation="MSDTIAKRERAEQILGELAELSLMLARDLAMQARAAEDTEEKAT
                     LAAAFQKMARTARLTLALDSKLDREAARDAAAAAKTAEEAVADAAAEAAHRHLTEPSP
                     AETQKRRVKGVLNRLLWNESESDQEEYEVLLEDLDARLYEAEDAPGFADMPIEVLAQK
                     LKADMRLTGELVVTTAERIVPANTPTPPLADTG"
     gene            complement(1047..1310)
                     /locus_tag="VHN39_05150"
     CDS             complement(1047..1310)
                     /locus_tag="VHN39_05150"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX2815754.1"
                     /translation="MIRVLIPSQLIAYTDGASRVEAAGASVGAVLDDLDARFPGLKFR
                     VVDEQDRVRKHMRMFIGQDETRSVGAALSDGDELLIFGALSGG"
     gene            complement(1307..>1567)
                     /locus_tag="VHN39_05155"
     CDS             complement(1307..>1567)
                     /locus_tag="VHN39_05155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase"
                     /protein_id="HEX2815755.1"
                     /translation="SPGGRPAAYRTRDAGASWERQDKGLPAEQGWFTVKRQAFCGDAC
                     DPMGLYFGATNGEIWMSEEGEGWRQIAAHLPEIYSVVAAPLP"
BASE COUNT          257 a          577 c          508 g          225 t
ORIGIN      
        1 gtgaagatcg gcggcagcgg cctgcccggc aacaccgcct tctgcggcga ctgcggcgcg
       61 gccatctatt cctgcagagg cgacgacccg ccgttctact ggctgcggac cggcgccatt
      121 cgccagcgcg ccgaactcat ccctatgggc cagggcttct gcgacaccgg catgccgtgg
      181 gcgatggacc tgtccggggt gcgggtcatt cctacggacc gttgagccaa ggtcggcttt
      241 ccacccagct ctgacctccc gcgcgcccgc ttgaggcgcg agcgaccaac cccacgtctc
      301 cgcgagcatc gaaaatcctt gactttcgct tcgaccaatg ttctcctttt gttcatgtcg
      361 gacacaatcg cgaaacgcga acgggcggag cagatcctgg gcgagctcgc ggagctttcc
      421 ctgatgctgg ctcgcgacct ggcgatgcag gcgcgcgcgg cggaggacac ggaggagaag
      481 gcgacgctcg cggccgcctt ccagaagatg gcgcggaccg cccgcctcac gctcgccctc
      541 gattccaagc tggaccggga ggccgcccgc gacgcggcgg ccgcggccaa gacggccgaa
      601 gaggcggtgg ccgatgcggc cgccgaggcg gcgcaccgcc acttgacgga gccctcgccc
      661 gccgagaccc agaagcggcg cgtgaagggc gtgctcaacc gcctgctctg gaacgaatcc
      721 gagagcgacc aggaggaata cgaagtcctc ctcgaagacc tcgacgcgcg cctctacgag
      781 gccgaggacg cccccggctt cgccgacatg ccgatcgagg tcctggccca gaagctgaaa
      841 gccgacatgc gcctcaccgg cgaactggtg gtcaccaccg ccgagcgcat cgtccccgcc
      901 aacaccccaa cgccaccgct ggccgacacg ggatgagcct cctctccccc gcgaagcgag
      961 agggagaggg tagggagagg gctggcgccg acgtcgccct ctcctcgatt gtctcccact
     1021 cttcgcttcg cgcgggggag gtaggcctac cccccgctca acgccccaaa gatcagcaac
     1081 tcgtcgccat ctgagagcgc agcgccaacg ctgcgggtct cgtcctggcc gatgaacatc
     1141 cgcatgtgct tgcgcacccg gtcctgctcg tcgaccaccc ggaacttcag ccccggaaag
     1201 cgggcgtcga ggtcgtccag caccgcgccc acgctcgcgc ccgccgcctc cacccggctc
     1261 gcgccgtcgg tgtaggcgat cagctgcgag gggatcagga cgcggatcat ggaagcgggg
     1321 ctgcgaccac cgaatagatc tccggcaggt gagcggcgat ctggcgccag ccctcgcctt
     1381 cctcgctcat ccagatctcg ccgttggtgg cgccgaaata gagccccatg ggatcgcagg
     1441 cgtcgccgca aaacgcctgc cgcttgacgg tgaaccagcc ctgttcggcg ggcagaccct
     1501 tgtcctgccg ctcccagctc gcgcctgcgt cgcgggtgcg gtaggcggcg ggccgcccgc
     1561 ccgggct
//
LOCUS       DATAJL010000266         2253 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17257,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000266 DATAJL010000000
VERSION     DATAJL010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17257"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1207
                     /locus_tag="VHN39_05160"
     CDS             <1..1207
                     /locus_tag="VHN39_05160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007664065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEX2815756.1"
                     /translation="YVIDMGPAAGVHGGHIVAEGSPADIMASPKSLTGQYLTGAREIA
                     VPQERRPISKKNVLRVIGATGNNLKNVTGEIPVGTFTCITGVSGGGKSTFTIETLYKA
                     AARRLNNASDAPAPYERIEGLENFDKVIDIDQSPIGRTPRSNPATYTGAFTSIRDWFA
                     GLPEAKARGYGPGRFSFNVKGGRCEACQGDGLIKIEMHFLPDVYVTCDVCHGQRYNRE
                     TLEILFRGKSIAQVLDMTVDEAGEFFKAVPVLREKMQTLNRVGLGYVKVGQSSTTLSG
                     GEAQRVKLSKELSRRATGKTLYILDEPTTGLHFEDTKKLLEVLHELVDQGNTVVVIEH
                     NLDVVKTADWVVDFGPEGGDGGGEIVATGTPEQVAASSKSWTGRYLAELLERHETRRK
                     GRVKKLVSA"
     gene            1263..1874
                     /locus_tag="VHN39_05165"
     CDS             1263..1874
                     /locus_tag="VHN39_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2815757.1"
                     /translation="MILYGAPNPAPNPRRVRIFLAEKGIVLPETRVDMMKREHKSPEF
                     RAKNSMGQLPALELDDGTVISETVAICRYLDETNPEPPMFGTTPLEKAMVDMWVRRVE
                     FTVMTPVGMFWRHAHPRTAALLTQFKEFGESNKETYRGAQRYLNRELEGKTWLAGEHY
                     SMADICLLTTVDFAGWIGLPLEEEHSNLRAWHERATARPSASA"
     gene            complement(1871..>2253)
                     /locus_tag="VHN39_05170"
     CDS             complement(1871..>2253)
                     /locus_tag="VHN39_05170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815758.1"
                     /translation="LALLAWLAMRFSLAGPANFATGRFGLADSWRLTKGRFWALLGMV
                     LLALCLLVLIAVVLFILTAVIQAAIGGFQTLAPVSLADPQALAERPGAYAFALIAELV
                     ISPLYLVIGQAPFVAAYKALSAAD"
BASE COUNT          427 a          783 c          733 g          310 t
ORIGIN      
        1 ctacgtcatc gacatggggc cggccgccgg cgttcacggc ggtcatatcg tcgccgaagg
       61 ctcgccggcc gacatcatgg cttcgcccaa gtcgttgacc ggccagtacc tgaccggcgc
      121 ccgcgagatc gccgtgccgc aggaacgccg cccgatctca aaaaagaacg tgctcagggt
      181 catcggcgcc accggcaaca acctgaagaa cgtcaccggc gagattccgg tggggacctt
      241 cacctgcatc accggcgtct ccggcggcgg caagtcgacc ttcaccatcg agaccctgta
      301 caaggcggcg gcccggcggc tgaataacgc ctcggacgcg ccggccccgt acgagcgcat
      361 cgaggggctg gaaaacttcg acaaggtcat cgacatcgac caaagcccga tcgggcgcac
      421 gccgcgctcg aacccggcca cctacaccgg cgccttcacc tcgatccgcg actggttcgc
      481 cggcctgccg gaggccaagg cgcgcggcta cgggcctggc cggttttcgt tcaacgtcaa
      541 aggcgggcgg tgcgaggcct gtcagggcga cggcctgatc aagatcgaga tgcacttcct
      601 gcccgatgtc tacgtcacct gcgatgtctg ccacggccag cgctacaacc gcgagacgct
      661 ggagatcctg ttccgcggca agtccatcgc ccaggtgctc gacatgacgg tcgatgaagc
      721 tggcgagttc ttcaaggccg tgccggtgct gcgcgagaag atgcagacgc tgaaccgcgt
      781 gggcctcggc tacgtcaagg ttggccaatc ctcgaccacg ctttccggcg gcgaagcgca
      841 gcgggtgaag ctgtccaagg agctgtcccg ccgggccacc ggcaagaccc tctacatcct
      901 cgacgagccg accaccggcc tgcatttcga ggacaccaag aagctgctgg aagtgctcca
      961 cgagctggtg gaccagggca acaccgtggt ggtcatcgag cacaacctcg acgtcgtgaa
     1021 gaccgccgac tgggtcgtcg acttcggccc cgagggcggc gacggcggcg gcgagatcgt
     1081 ggccaccggc acccccgaac aggtggccgc cagctcgaag agctggaccg gccgctacct
     1141 cgccgaactc ctcgagcgcc acgagacgcg ccgcaaggga cgggtgaaga agctggtcag
     1201 cgcctagact cccgggcgtt tttccctccc cttgcgggga gggaaaccca ggaagctgaa
     1261 ccatgatcct ctacggcgcg ccgaaccccg ctcccaatcc gcgccgggtg cgcatcttcc
     1321 tggcggagaa ggggatcgtg ctgcccgaga cccgcgtcga catgatgaag cgcgagcaca
     1381 agtcgccgga gttccgcgcc aagaattcca tgggccagct ccccgccctt gaactcgacg
     1441 acggcacggt gatctccgag acggtggcca tctgccgcta cctcgacgag accaaccctg
     1501 agccgccgat gttcgggacc acgccgctcg agaaggccat ggtcgacatg tgggtccgcc
     1561 gcgtcgagtt cacggtgatg acgccggtgg gcatgttctg gcgccacgct catccgcgca
     1621 ccgcggccct gctcacccag ttcaaggagt tcggggagag caacaaggag acctacaggg
     1681 gcgcccagcg ctatctgaac cgcgaactgg agggcaagac ctggctggcc ggcgagcact
     1741 actccatggc cgacatctgc ctgctgacca ccgtcgattt cgctggctgg atcggcctgc
     1801 cgttggagga ggagcattcc aacctcaggg cctggcacga gcgcgccacg gcccggccca
     1861 gcgccagcgc ctagtcggcg gccgacagcg ccttgtaggc cgccacgaac ggggcctgac
     1921 cgatcaccag gtagagcggc gagatcacca gctcggcgat cagggcaaag gcgtaggcgc
     1981 ctggccgctc ggccagcgcc tgcgggtcgg cgaggctgac gggcgccagc gtctggaagc
     2041 cgccgatcgc cgcctgaatc acggccgtca ggatgaacag cacgaccgcg atgagcacca
     2101 gcaggcagag ggccagcagg accatcccaa gcagggccca gaagcgaccc ttggtcagac
     2161 gccacgagtc cgcgagcccg aaccggccgg tggcgaagtt cgccggtccc gccaggctga
     2221 aacgcatcgc cagccacgcg agcagcgcca gat
//
LOCUS       DATAJL010000267         2634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17288,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000267 DATAJL010000000
VERSION     DATAJL010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17288"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1306
                     /gene="glpK"
                     /locus_tag="VHN39_05175"
     CDS             <1..1306
                     /gene="glpK"
                     /locus_tag="VHN39_05175"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HEX2815759.1"
                     /translation="VQKAARSMTDVAAIGITNQRETVVVWDKASGKPIHRAIVWQDRR
                     TAATCDRLRSAGHEGRVTEISGLLLDPYFSGTKIAWLLDKVDGARARAEAGELLAGTM
                     DSWVIWKLTGGKVHATDATNASRTLLFDIRKQAWSDEMSEMLDVPLSLMPEVRDCNGD
                     FGETDAALLGRAVPIRGVAGDQQAALMGQGCIRPGEMKATYGTGCFMLINTGETAPVS
                     KARLLTTVAARVNGRTTYALEGAIFIAGAAIQWMNEGLEVGGGPQGVEKLAMEARDDQ
                     GVVLVPAFTGLGAPWWDAGARGAIVGLTRDAGLPEIARAAFDASALQTRDLIEAMRAD
                     APKAFHDKVELRIDGGMSRSLWFSQRLADLTGVTVCRATYGETTALGAALFAGVGSGL
                     YRDVEEAAGARPKTEGYAPALDAHRREAAYARWLDAVARVRS"
     gene            complement(1303..1905)
                     /locus_tag="VHN39_05180"
     CDS             complement(1303..1905)
                     /locus_tag="VHN39_05180"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX2815760.1"
                     /translation="MLRFLVAPLAGVAVIAMAGAAQSAILVYTASMTGANEVPTNASL
                     ATGFTTVTIDNALNTMGVDISFNGLTTPATAALIHCCVPAGTSGPVAVAVPAFPTVTS
                     GSHFQLFDLTSLTTYTAAFVTNSGGTAAGAEATLLAALSSGLAYSSLHDTLFPGGEIR
                     GQLAGVSATATVPEPGTWALMVLGFGLLGAGLRSRRGAFA"
     gene            2120..>2634
                     /locus_tag="VHN39_05185"
     CDS             2120..>2634
                     /locus_tag="VHN39_05185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008264051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEX2815761.1"
                     /translation="MADGSVAGVAALKGKVSAEEWQARVDLAALYRLVALYGWDDLIY
                     THISARIPGPEHHFLINPYGMLFEEMTASSLVKIDLEGNILQETPYFINPAGFTIHSA
                     IHAAREDAHYVMHLHTDQGVAVAAQKEGLLPLSQHALVILPSLAYHDYEGIALNHEEK
                     DRLVHDLGDKSV"
BASE COUNT          444 a          887 c          917 g          386 t
ORIGIN      
        1 ggtgcagaag gccgcccggt cgatgaccga cgtcgcggcc atcggcatca ccaaccagcg
       61 cgagacggtc gtggtctggg acaaggcctc gggaaagccg atccatcggg ccatcgtctg
      121 gcaggaccgc cgcacggccg cgacctgcga cagattgcgc agcgccggcc acgaagggcg
      181 ggtgacggag atctccggcc tgctgctcga cccctatttc tccggcacca agatcgcctg
      241 gcttctggac aaggtggacg gcgcccgggc ccgcgccgag gccggcgaac tgctggccgg
      301 caccatggac tcgtgggtga tctggaagct caccggcggc aaggtccacg ccaccgacgc
      361 caccaacgcc tcgcgcacct tgctgttcga tatccgcaaa caggcctggt cggacgagat
      421 gagcgagatg ctggacgtgc cgctctccct catgccggag gtgcgcgact gcaacggcga
      481 cttcggcgag accgacgccg cgctgctcgg ccgggccgtc ccgatccgcg gcgtggccgg
      541 cgaccagcag gcggcgctga tggggcaggg ctgcatccgg ccgggcgaga tgaaggccac
      601 ctacggcacc ggctgcttca tgctgatcaa cacgggcgag accgcgccgg tgtccaaggc
      661 gcgtctgctg accacggtgg cggcgcgcgt gaacggcagg acgacctatg cgctcgaggg
      721 cgcgatcttc atcgccggcg cggcgatcca gtggatgaac gaaggcctgg aggtcggcgg
      781 cgggccgcag ggggtcgaga agctggccat ggaggcccgc gacgatcagg gcgtcgtgct
      841 ggtgccggct ttcaccggac tcggcgcgcc ctggtgggac gccggcgccc ggggcgccat
      901 cgtcggcctg acgcgggacg ccggcctgcc ggagatcgcc cgggccgcct tcgacgcctc
      961 ggcgctgcag acccgcgacc tgatcgaggc catgcgcgca gacgccccca aggccttcca
     1021 cgataaggtg gaactgcgga ttgacggggg catgtcgcgc agcttgtggt tcagccagcg
     1081 gctggccgat ctgaccggcg tcaccgtctg ccgcgcgacc tacggcgaga ccacggctct
     1141 gggcgccgcg ctcttcgccg gcgtcggctc aggcctctac cgggacgtcg aggaggccgc
     1201 cggcgctcgt cccaagaccg aaggctatgc gccggctctg gacgcccacc gccgcgaggc
     1261 cgcctacgcc cgttggctgg acgcggtggc aagggtgcgc agctaggcga aggccccgcg
     1321 acggctccgt agtcctgcgc ccaggaggcc gaagccgaga accatcagcg cccatgttcc
     1381 aggctccgga acggtcgcgg tcgcggagac gcctgcaagc tggccgcgaa tttccccgcc
     1441 ggggaaaagg gtgtcgtgga ggctcgaata ggccaagccg ctggaaagcg ctgcgagcag
     1501 ggttgcttcg gcccccgccg cggtgccgcc ggagttcgtc acgaaggcgg cggtgtaagt
     1561 cgtgaggctc gtcaggtcga agagctggaa atgactgccg ctggtcaccg tcgggaaggc
     1621 cgggaccgcg acggccaccg gcccgctcgt tcccgctggg acgcagcagt gaattagagc
     1681 cgccgtcgcc ggggtggtga ggccgttgaa ggagatatcc actcccatgg tgttgagcgc
     1741 gttatcgatc gtcacggtcg tgaacccggt cgccaagctg gcgttcgtcg gaacctcgtt
     1801 cgcgccggtc atactggcgg tgtacaccag gatggcggat tgggccgctc ccgccatggc
     1861 gatgacggcg actccggcga gcggcgcgac caggaaacga agcatggcga cctcctcttg
     1921 gaccttggaa atccgacgcg cgccgaattg gcagcctccc aaaggtgagg cttggcctga
     1981 ggtcacacct tcaagttgcg ccacacaacc tgggtgtcaa gctgtcgaac agcgttccct
     2041 cagggcgacg cgtgcgcgcg cttgacgctg gatcgcccca gcgcgactct atcggcgatc
     2101 agaaatcggg agaaaccgca tggcggatgg atcggttgcc ggcgtcgcgg ccctcaaggg
     2161 caaggtgagc gccgaggaat ggcaggcccg agtggacctg gccgcgctct atcggctagt
     2221 ggcgctctac gggtgggacg acctgatcta cacccacatc tccgcccgca tcccgggacc
     2281 ggagcaccac ttcctgatca acccgtacgg catgctgttc gaggaaatga ccgcctcgtc
     2341 gctggtgaag atcgacctgg agggcaacat cctccaggag acgccctact tcatcaatcc
     2401 ggccggcttc accatccatt cggcgatcca cgccgcgcgc gaggacgccc actacgtgat
     2461 gcacctgcac accgatcagg gagtggccgt ggccgcgcag aaggagggcc tgctgccgct
     2521 gagtcagcac gccctcgtca tcctgcccag cctcgcctat cacgactatg aaggcatcgc
     2581 cctcaaccat gaggagaagg accgcctggt tcatgacctc ggcgacaagt cggt
//
LOCUS       DATAJL010000268         4939 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79352,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000268 DATAJL010000000
VERSION     DATAJL010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4939
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79352"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /locus_tag="VHN39_05190"
     CDS             <1..301
                     /locus_tag="VHN39_05190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815762.1"
                     /translation="LSAVQYEGRKKFDAFNKYADSQPPALRQSLISQRGRLFSGMDGF
                     GGKSDNAMNAAAAPKTVPIRTLGDELLRKKALATLPNDPLYASAQKWLATHGVAQ"
     gene            298..2832
                     /locus_tag="VHN39_05195"
     CDS             298..2832
                     /locus_tag="VHN39_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815763.1"
                     /translation="MNDPFAADLAAKGIGGADDNVDPETPWLKKGYKPDPFAADLAAK
                     GVGLAPDDTSRKFPNNTGPDVDLRLKEEAAAAAPPSLAHDVGQSFANFGSTVAKGAGA
                     AARLASPLGVDDKGGIGLHIPFSDLSQAPYRREGERGVSDVVTGGLAERAANSLDPAF
                     AASGETDKAAAPGVREAAQLGGSVLPSPFRWLGEQAAPVAGALAERAGAGNVVQAATR
                     GAAAYEGQAVPQAVVAAPDGRRMDAAERAAVDPAGLALAAGAPAATEAATSTDALAAA
                     KARMIQAARRYAVKDLGTDITSADGVRARVTDQKRIAEVNDRLFNTVSQLDKEQPGFR
                     NVFRKPASKAIPRVEQVLQDTMAPRDGLYQELDAASIAPKPARRANEGAVPETIENEA
                     PTGRIEDPNFSPPATTLNSGEDHFVEGANADRPESPSSLRTTATHNAVIDYPGRRAAG
                     ETGYVPVGDEVLPHRAEDAVPVDPYEVAPGDIISEADAPKGGVLLKDIIDAHHRAAED
                     AIRASKGGGTFGEPDAARFKFRAAQFDRIYGQDLPPKVDPDFVIDKKSGMTAGKMLEI
                     LNRRPDAPGIPEEIQKIEKLATVPGGRDPDVRVPALHFRKEVTESGKAAESVLGGLEG
                     TPRFEALSKLHEVGQNILNKHIDESGMDPNRIAQLRAMNDRYFLLKRAQSAMESRGWK
                     EANRPGWRLPHTIRSAEAGGLASIATYGGFHPHAIAPLLATYGIAHALPAIANRVNWR
                     IANMEPSVPGMLPPPPRGPVDGRLLLGLPNRLARTASDTSMANVAAADRVPQIVGQED
                     KENDPNLGAGPFASPDDLQDLAKQAIGDPDATPAEKARALQILRGQ"
     gene            2832..4361
                     /locus_tag="VHN39_05200"
     CDS             2832..4361
                     /locus_tag="VHN39_05200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815764.1"
                     /translation="MGKYAALFAAPPDDSLKIPTYTPPPAPPPIEYGPQPSPEETSNA
                     ALARAYPGAATVDDAALLNRIGGKYKALDPYMKNAAIVQRQPIPGDDRQLEFHHPLSS
                     ENPVPGKMTFELFRPFKGQEREDAVAADALHYLGGRTQDDSGPPVDPQWSQLRDRLWN
                     ARSASQKSIDDKTYRDEHENGQSFDDWASRNRKDAYVRGGMFPEANPEWNRGPGDPYA
                     WTPEQNATFTAMRGYLANGPKQDFKLPTYAPPEDQAGPVSPESQAWAMSPPVQTANAQ
                     ARLEGGQGTWEDRKLLGKSVPTDQDEGREFAKFAARAAAGELAAPLIGKGVSAIAARV
                     RAIQAARAGAGAMPPIEEAAPPVALNAQGSKGGAVDLASRLAAKQAAEDWAKEQATGQ
                     LDYEPAPAQPDGLAEHGLQMHTWQPFKDDEVFSKWKATPEFNGVGLVQKDDPSKFVAI
                     HRSTKEPGRWQASSFDSDGAVGDSIRDNPDELLQDYSHKRYNPVALKTVGAPVDPEEQ
                     P"
     gene            complement(4358..>4939)
                     /locus_tag="VHN39_05205"
     CDS             complement(4358..>4939)
                     /locus_tag="VHN39_05205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815765.1"
                     /translation="DLKTPPLPKHTAAIMGAFGEHADTAFAANEIADKIQTYLLGKVP
                     KRTHEGIQGPVDEMPAHSDVARFRRLWSVACDPVGVIMEAVGEYALSRDMVRAFADMY
                     PLTYARCQQGIETQLARKSGVEPKFRLSIRKEQILRILKQQEDVTSRALGVALQAMFK
                     KDMVSLAPKPPKPKTPGSASTESTETDRIMAGD"
BASE COUNT          928 a         1711 c         1589 g          711 t
ORIGIN      
        1 actcagcgcc gtgcagtacg aggggaggaa aaagttcgat gccttcaaca agtacgctga
       61 ctctcaaccg ccggcactgc gccagtccct gatctcccag cgcggccgcc tgttctccgg
      121 aatggacgga ttcggcggca agtccgacaa cgcgatgaac gccgccgccg cgccgaagac
      181 cgtcccgatt cgcacgctcg gcgatgaact gctcagaaag aaggcgctcg cgacgctgcc
      241 gaatgatccg ctctatgcgt ccgcacagaa gtggctcgcc acccatggtg tcgcgcaatg
      301 aacgacccgt tcgccgctga cctggcggcc aagggaatcg gcggcgcgga cgacaacgtc
      361 gatcccgaaa ccccttggct caaaaagggc tacaagcccg atccattcgc cgccgatctg
      421 gcggccaagg gcgtcggcct cgcgcccgac gacacctcgc gcaagttccc gaacaacacg
      481 gggccggacg tcgatctgcg cctgaaggag gaggccgcag ccgccgcgcc gccgtccctc
      541 gcgcacgacg tcggccagtc gttcgcgaac ttcgggtcaa ccgtcgccaa gggagcgggc
      601 gccgccgcgc gcctggcgtc gccactcggc gtggacgaca aggggggcat cgggcttcac
      661 atcccgttct ccgatctgag tcaggctccc taccgccggg agggcgagcg tggcgtctcc
      721 gacgtcgtca ccggcggact ggcggagcgt gccgccaact cgctggatcc tgccttcgcc
      781 gcatctggcg agaccgacaa agccgccgct ccgggcgtcc gggaagccgc ccaacttggc
      841 ggctcggtcc tcccgagccc tttccgctgg ctcggggagc aggccgcacc cgtcgcaggg
      901 gccctggcag agcgcgcagg ggctgggaac gtcgtccaag ccgctacccg cggggcggcc
      961 gcctacgagg ggcaggcggt tccccaggcg gttgtagcgg cacctgacgg tcgtcgcatg
     1021 gacgccgcgg agcgcgcggc cgtagatccg gccggcctcg ccctggccgc cggggccccc
     1081 gccgccaccg aggcagccac gagcactgat gccctcgccg ccgccaaggc tcggatgatc
     1141 caggcggcgc gccggtacgc cgtgaaggat ctgggtacgg acatcacgag cgccgacggc
     1201 gtccgggccc gcgtcacgga ccagaagcgg atcgcggagg tcaacgatcg cctgttcaac
     1261 accgtctcgc aactcgacaa ggagcagccg gggtttcgga atgtgttccg aaagccggcc
     1321 tcgaaggcga tcccgagggt cgagcaggtc ctccaggaca cgatggcccc ccgcgacggg
     1381 ctctaccagg aactggacgc ggcgtcgatc gctcccaagc cggccaggcg cgcgaacgaa
     1441 ggggccgtcc cggaaaccat cgagaacgaa gccccgactg gccgcatcga ggacccgaat
     1501 ttctcgccgc cagcaaccac gctgaacagc ggcgaggacc atttcgtcga gggcgccaac
     1561 gccgaccgcc ccgaatcccc atcgagcctc cgaacgacgg ccacgcacaa cgccgtgatc
     1621 gactatcccg ggcggcgtgc cgccggcgag accggatacg tcccggtcgg agacgaggtt
     1681 ctccctcatc gcgccgagga cgctgttcct gtcgatccgt acgaggttgc cccgggagac
     1741 atcatctcag aggctgacgc tcccaagggt ggcgtcctcc tgaaggacat catcgatgct
     1801 catcaccggg ccgcagagga cgccatccgc gcgagtaagg gcggcggcac atttggcgaa
     1861 ccggacgccg ctaggttcaa atttcgcgct gcccagttcg atcggatcta cggccaggac
     1921 ctcccgccga aggtcgatcc tgacttcgtg atcgacaaga agagtgggat gacggcaggt
     1981 aagatgctgg agatcctgaa ccgccgtcct gacgcccccg gcatcccgga ggaaattcag
     2041 aagatcgaga agctggcgac ggtccccggc ggccgagacc ccgatgtcag ggtccccgcg
     2101 cttcatttcc gcaaggaggt cacggagagc gggaaagctg ccgaatccgt cctcggtggc
     2161 ctcgaaggaa cgccgcggtt cgaggccctc tcgaagcttc acgaggtcgg ccagaacatc
     2221 ctcaacaagc acatcgacga gtcgggcatg gatcccaaca ggatcgccca gctgcgcgcg
     2281 atgaacgacc gctatttcct gctgaagcgc gcgcagagcg ccatggagtc gcgtggctgg
     2341 aaagaagcga accggcccgg ctggcggctc ccgcatacga ttcgctccgc cgaggctggt
     2401 gggctcgcca gcattgccac ctacggtggg tttcatccgc acgccatcgc acccctgctt
     2461 gcgacctacg gaatcgccca cgcactcccg gcgatcgcga accgcgtgaa ctggaggatc
     2521 gccaacatgg aaccatctgt tccagggatg ctcccgccgc cgccgcgagg tcctgtcgac
     2581 gggcgcctgt tgcttggact cccgaaccgg ctggcgcgca cagcgagcga cacctcgatg
     2641 gccaatgtcg ccgccgccga ccgcgtgcct cagatcgtcg ggcaggagga caaggagaac
     2701 gatccgaacc tgggcgccgg cccgttcgcc tccccggacg atcttcagga cctggcgaag
     2761 caggcgattg gcgatcccga cgccacgccc gccgagaagg cccgagccct ccagatcctc
     2821 cgggggcagt gatgggcaag tacgcagccc tgttcgcggc tcctcccgat gacagcctga
     2881 aaatccccac ctacacgccg ccgccagcac cgccgccaat cgagtacggt cctcagccat
     2941 cccccgagga gaccagcaac gctgcgctcg cccgagccta cccaggtgca gcgacggtcg
     3001 atgacgctgc cttgctgaac aggatcggcg ggaaatacaa ggccctggac ccatacatga
     3061 agaatgcggc catcgtccag cgccagccga tcccagggga tgatcgtcag ctcgaattcc
     3121 accatcctct ttcttccgag aacccagttc ctgggaagat gacgtttgaa ttgtttcgcc
     3181 cgttcaaggg gcaggagcgg gaagacgccg tagcagcaga tgcgctccac taccttggtg
     3241 gcaggaccca ggatgactct gggccacccg tcgatccaca gtggagccag cttcgcgatc
     3301 gcctctggaa tgctcgctca gccagccaga aaagcatcga cgacaagacc taccgtgacg
     3361 aacacgagaa cgggcaatcc ttcgacgact gggcaagtcg caaccgcaaa gatgcgtatg
     3421 tgcgcggtgg catgtttcca gaggcgaatc ccgagtggaa ccgtggcccg ggggatccat
     3481 acgcctggac ccctgaacaa aacgcgacct tcacggcgat gcgcggctac cttgccaacg
     3541 gacccaagca ggacttcaag ctccccacct acgcgccgcc agaagaccag gccggcccgg
     3601 tgagccccga aagccaagcc tgggccatgt cccccccagt gcagaccgcg aacgcccagg
     3661 cgcgcctgga gggcggccag gggacatggg aggatcgcaa actcctcggg aagtcagtcc
     3721 cgaccgacca ggacgaaggc cgggaattcg ccaagttcgc cgcccgcgcc gccgcgggtg
     3781 agttggcggc cccgctcatc ggcaaaggag tctcggccat cgccgcgagg gtcagggcca
     3841 tccaggccgc ccgcgctgga gccggcgcca tgcccccgat cgaggaggcc gctcccccgg
     3901 tcgccctcaa cgcccaggga tcgaagggcg gagccgttga cttggcctcg cgactggcgg
     3961 cgaagcaagc cgccgaggac tgggcgaaag agcaggccac cggccaactc gactatgagc
     4021 cggcgccagc ccagcccgat gggctcgccg agcatggtct ccagatgcac acgtggcagc
     4081 cgttcaagga cgacgaggtt ttcagcaagt ggaaggcgac gccagaattc aacggtgtcg
     4141 gtctcgtgca gaaggacgac ccctcgaagt tcgtcgcgat ccaccgctcg acgaaagagc
     4201 ccgggaggtg gcaggcaagc agcttcgaca gcgatggagc cgtcggcgac agcatccgcg
     4261 acaacccgga cgagctgctc caggactaca gccacaagcg gtacaacccg gtcgcgctga
     4321 agacagttgg cgccccggtc gatcccgaag aacagcccta gtcgccggcc atgatccggt
     4381 cggtctcggt gctctcggtc gatgccgagc ccggcgtctt tggcttcgga ggcttgggcg
     4441 ccaaggagac catgtccttc ttgaacatcg cctgaagcgc aaccccgagc gcacgggatg
     4501 tgacgtcctc ctgctgcttc aggattcgaa ggatctgttc cttccggatg gagagcctga
     4561 atttcggctc gacgccgctt ttgcgggcca actgggtctc gattccctgc tggcagcgcg
     4621 cgtaggtgag cgggtacata tcggcgaacg cccgcaccat gtcgcggctt agagcgtatt
     4681 cgccgaccgc ttccatgatg acgccgaccg ggtcgcaggc cacggaccag aggcgccgga
     4741 agcgggcgac atcgctgtgc gccggcatct cgtccaccgg gccctggatt ccctcgtgcg
     4801 tccgcttggg aaccttgccg aggaggtacg tctggatctt gtcggcgatc tcgttggcgg
     4861 cgaacgccgt gtcggcgtgc tccccgaacg cgcccatgat cgcggcggtg tgcttcggca
     4921 gcggcggcgt cttgagatc
//
LOCUS       DATAJL010000269         1870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_30141,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000269 DATAJL010000000
VERSION     DATAJL010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30141"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..1169
                     /locus_tag="VHN39_05210"
     CDS             240..1169
                     /locus_tag="VHN39_05210"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEX2815766.1"
                     /translation="MSAPDRPPRRLYGDELAAMFGSDAPAPFMVSRSLPHAQLAVTEL
                     RIDEPVGRISDPLPREDAYLIAHELRSVRGLEYWENGRYLTTYDTRPGENSITDLRHE
                     PMVKFETPAHCMLWLVPLAALDVLADEANVPRIDGLPHRPGVGFADETMRHLNLAAIA
                     ALQQPGQVSRLFVDCLTLAFTAHVAQVYGGMEPAARLVKGGLAPWQERRAKEFLQADL
                     AGAPPLADLAAACGLSPSHFARAFRRTTGLAPHAWLLQARVARSMTLLREPQMSLSEI
                     ALACGFVDHSHFTRVFVRRVGLTPGAWRRTVSS"
     gene            1406..1867
                     /locus_tag="VHN39_05215"
     CDS             1406..1867
                     /locus_tag="VHN39_05215"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2815767.1"
                     /translation="MSPPAEISSAEAADRLAIQELVEAYAHCADRRDAQGQMALFTPD
                     THFVVYMDAKAPAPSQELHAREDLAPVFADLNKYAATMHFIGQSTITSLTGDQAVGRT
                     YCLAHHLTVAGDGRKLMVAALRYIDRFAKADGVWRFSERRLYVDWIEERAL"
BASE COUNT          284 a          678 c          610 g          298 t
ORIGIN      
        1 acagtaatgg gtcccggccg acggggaaac tgatcgtctt caacgccgtc tctcagacgt
       61 caggcgccca ccggctcgag gccttggaat agaggtcccg gaaactttga gtttccagat
      121 tttgcacgcc ggccgggacc cattactgtt acgacaggca cactctgccg aagcggcgac
      181 gtccgtatgc gcacaatgtc gggttcaata cttagggcaa aggtcgcgtg acggccgcct
      241 tgagcgcgcc cgatcgcccg ccgcgtcggc tctatggcga tgaactggcc gcgatgttcg
      301 gctccgatgc gccagccccc ttcatggtct cccggtcgtt gccgcacgcg cagctcgcgg
      361 tgaccgagct tcggatagac gagccggtcg ggcgcatttc cgatcccctg ccgcgcgaag
      421 acgcctacct gatcgctcac gagctccggt ccgtccgggg cctggagtat tgggaaaacg
      481 gccgttacct cacgacctac gacacgcgcc ccggcgaaaa cagcatcacg gacctccggc
      541 acgagccgat ggtgaagttc gaaaccccgg cccactgcat gctgtggctg gtgccgcttg
      601 cggcgctgga cgtcttggcc gatgaggcca atgtcccgcg catcgacggg ctcccccaca
      661 ggccgggcgt cggcttcgcc gatgagacga tgcggcacct gaacctggcg gcgatcgcgg
      721 cgctgcagca gcccgggcag gtcagccggc tgttcgtgga ctgcctgacc cttgcgttca
      781 ccgcccacgt cgcccaggtc tatggcggca tggaacccgc ggcgcgcctg gtgaagggcg
      841 gcctggcgcc ttggcaggag cgccgggcga aggagttcct gcaggccgat ctggccggcg
      901 ccccaccgct ggctgacctc gccgccgcct gcggcctctc cccgagccat ttcgcccggg
      961 cgttccgccg gaccactggc cttgcccccc acgcgtggct gctgcaggcg cgcgtcgcgc
     1021 gatccatgac cctgctgcgc gagccgcaga tgtcgctctc ggagatcgcg ctcgcctgcg
     1081 gcttcgtcga ccacagccac ttcacccgcg tcttcgtgcg gcgggtgggc ctgacgccgg
     1141 gcgcctggcg gcgaacggtg tccagctagg acgcctctcg cggaggctcc agccgccgga
     1201 ttcgatctgg attcgaccga cgccgccgaa aacataccag cgccgggcgc gggaagcgcc
     1261 gaggatcggg actgtccttg ggggcgggaa cggcccctcc cgaagccgga gcgtcccatg
     1321 acggtccccg atcgtgacat cacggcccta tctgtgcgcc tcgccagccg gacgggcgcc
     1381 gcggaccgcc gcccaggagc gcgtcatgtc tccgcccgct gagatctcct ccgccgaggc
     1441 ggccgaccgg ctggctatcc aggagctcgt cgaagcttac gcgcactgcg ccgaccggcg
     1501 cgacgcgcaa ggccagatgg ccctcttcac gccggacacc cacttcgtcg tctacatgga
     1561 tgcgaaggcc ccggcgccgt cccaggagct gcacgctcgc gaggacctgg cgccggtgtt
     1621 tgcggacctc aacaagtacg ccgccacgat gcacttcatc gggcagagca cgatcacctc
     1681 gctcaccggc gaccaagccg ttggtcgcac ctattgcctg gcccaccacc tgaccgtcgc
     1741 cggcgacggg cggaaactga tggtcgccgc cctgcgctat atcgaccgct tcgcgaaggc
     1801 cgatggcgtc tggcggttct ccgagcgccg gctctacgtc gactggatcg aggagcgcgc
     1861 gctgtgagac
//
LOCUS       DATAJL010000270         3351 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92126,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000270 DATAJL010000000
VERSION     DATAJL010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3351
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92126"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(67..411)
                     /locus_tag="VHN39_05220"
     CDS             complement(67..411)
                     /locus_tag="VHN39_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-translocating transhydrogenase family
                     protein"
                     /protein_id="HEX2815768.1"
                     /translation="MEAVDPTVFRLAIFVLAIFVGYYVVWSVTPALHTPLMAVTNAIS
                     SVIIVGALLAVAAHPASGGAMTANVWISKGSGAVAAAFASVNIFGGFLVVRRMLAMYK
                     KKAPAPKKEGAA"
     gene            complement(415..1548)
                     /locus_tag="VHN39_05225"
     CDS             complement(415..1548)
                     /locus_tag="VHN39_05225"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008746 - NAD(P)+ transhydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HEX2815769.1"
                     /translation="MAVIAVTRERRAGETRVAAVPETVKKLIASGFSVVVEAGAGTAA
                     SYPDADYAAAGATIAKTAKDALAKADILFKVRAPEADEIAAIKAGTLVVATLNPYIDK
                     AALAGLAKAKATAFAMEFVPRITRAQVMDVLSSQANLAGYRAVIEGAEAYNRAMPMMM
                     TAAGTIAAAKVFIMGVGVAGLQAIATARRLGAVVTATDVRPATKEQVESLGAKFLAVE
                     DEEFKNAQTAGGYAKEMSKEYQAKQAELVSTHIAKQDMVITTALIPGRPAPKLVSAAQ
                     VASMKPGSVIVDLAIEQGGNVVGAKLGEVAVTKNGVKILGVANLPGRIATDASALYAR
                     NLMAFAGLFLDKDGKFAPDYADEILAAALVTQGGKVVHPNLKA"
     gene            complement(1650..1886)
                     /locus_tag="VHN39_05230"
     CDS             complement(1650..1886)
                     /locus_tag="VHN39_05230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aa3-type cytochrome c oxidase subunit IV"
                     /protein_id="HEX2815770.1"
                     /translation="MAGQASDYHHGDQDISEQVATFKLIMGITKWGSLLIAAFLVTAV
                     LWFCTGAGFMAGAISGAVVLGLGITLLRSGGGEH"
     gene            complement(1951..2997)
                     /locus_tag="VHN39_05235"
     CDS             complement(1951..2997)
                     /locus_tag="VHN39_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2815771.1"
                     /translation="MAEDVKPAETYDDRPVHAETPLPPEVQAPLAEYRGELPPSPQWF
                     KDAIAREPERVFVESLGSKLEVLTWGEVGKPGLLFVHGNSAHADWWSFIAPFFADDYR
                     VASMSLAGMGASDWRERYSFGDFAEDAEAVSRATGLYEGGRKPIYIGHSFGGGQVFFA
                     AVRNPERMHAAIMVDTGFGPPPEELAKRQAQMEAIRNIPTVDRPSRVYETLEAALGRF
                     RLMPPQPAGNPYIADFIARRSLKKVPLEGGKGEGWTWRFDPNMWAKLDRERAMGGDPS
                     QPVTVTTPMVHIYGAKSRIVEHRKSGAPSPFPPGLIEIEIPDAHHHIMIDQPLALVAA
                     LRALLAAWPPKSAA"
     gene            complement(2998..>3351)
                     /locus_tag="VHN39_05240"
     CDS             complement(2998..>3351)
                     /locus_tag="VHN39_05240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815772.1"
                     /translation="LVLGVVRVALRLRVLQRRPVGDKVGAGRHGVDPDVWLQRAGAER
                     SLSLTGDASLPLQLSQLSSPQWRGARHDLRLKLHFDPPQRLDEPLAIFQTLVSHDPIL
                     TGRPGLRAHRIFKDA"
BASE COUNT          521 a         1126 c         1164 g          540 t
ORIGIN      
        1 ctcccgcgcc gatcagaatc agcgccagga cgacgggaag tgcgacgatg aacgcggtat
       61 cagcgttcac gcggctccct ccttcttcgg agccggcgcc ttcttcttgt acatggccag
      121 catccgcctc acgaccagga agccgccgaa gatattgacc gaggcgaagg ccgcggcgac
      181 cgcgccggag cccttggaaa tccagacgtt cgccgtcatc gccccgccgc tggccggatg
      241 cgccgccacg gccaggagcg cgcccacgat gatcaccgag gagatggcgt tggtgaccgc
      301 catgagcggc gtgtgcaggg cgggggtcac gctccagacc acgtagtagc cgacgaagat
      361 cgccagcacg aagatcgcca ggcggaagac ggtgggatcg acggcttcca tcgctcaggc
      421 cttcaggttc gggtggacga ccttgccgcc ctgggtgacc agcgccgcgg ccagaatctc
      481 gtcggcgtag tcgggggcga acttgccgtc cttgtcgagg aagaggccgg cgaaggccat
      541 caggttgcgg gcgtagagcg cggacgcatc cgtcgcgatc cggccgggca ggttggcgac
      601 ccccaggatc ttcaccccgt tcttggtcac ggccacttcg ccgagcttgg cgcccaccac
      661 attgccgccc tgctcgatgg ccaggtcgac aatcaccgag cccggcttca tggaggccac
      721 ctgggccgcg gagaccagct tcggcgccgg ccggccgggg atcagggcgg tggtgatcac
      781 catgtcctgt ttggcgatgt gcgtggagac cagctccgcc tgcttggcct ggtattcctt
      841 gctcatttcc ttggcgtagc cgccggcggt ctgggcgttc ttgaactcct cgtcctccac
      901 cgccaggaac ttggccccga ggctttccac ctgctccttg gtggcgggac gaacgtcggt
      961 ggcggtgacc accgcgccca ggcgcctggc cgtggcgatg gcctgcaggc cggcgacgcc
     1021 gacccccatg atgaacacct tggcggcggc gatggtgccg gcggcggtca tcatcatcgg
     1081 catggcccgg ttataggctt cggcgccctc gatcaccgcg cggtagccag cgaggttggc
     1141 ctgggaggac agcacgtcca tcacctgggc gcgggtgatc ctgggcacga actccatggc
     1201 gaaggccgtg gccttggcct tggcgaggcc ggccagcgcg gccttgtcga tgtacggatt
     1261 gagggtcgcg accaccaggg tcccggcctt gatcgcggcg atctcgtcgg cctcgggcgc
     1321 gcggaccttg aacaggatgt cggccttggc cagcgcgtcc ttggcggtct tggcgatcgt
     1381 cgcgccggcg gcggcatagt cggcgtcggg atacgaggcg gcggttcccg ccccggcctc
     1441 gaccaccacc gaaaacccgg aggcgatcag tttcttcacc gtctcgggaa cagcggcgac
     1501 gcgggtttca ccagcgcggc gttccctggt gacggcgatg acagccatgg tccgcgaagt
     1561 cccccaaacg cgactgacgc gaccttacgg gcgcttcgcg gaatctgtcc agacggcccc
     1621 caaggacgtt cttggggcgc ccctcaggcc tagtgctcgc cgccgccgct gcgcagcaag
     1681 gtgatgccaa gtccgaggac gacggcgccg gagatcgcgc cggccatgaa gcccgcgccg
     1741 gtgcagaacc acaggaccgc ggtcaccagg aacgcggcga tgagcagcga gccccacttg
     1801 gtgatgccca tgatcagctt gaacgtcgcc acctgctcgg agatgtcctg gtcgccgtgg
     1861 tggtagtcgg aagcctggcc ggccatgggg cgtgctcttt cggtgatcaa tcgactctag
     1921 gccgggtgct acacgagacc cggcttccgc tcaagcggcg gacttgggcg gccaggccgc
     1981 gagcagggct ctcagggccg ccaccagggc cagcggctgg tcgatcatga tgtggtggtg
     2041 ggcgtcgggg atctcgatct cgatcagccc gggcgggaag ggcgagggcg cgccggactt
     2101 gcggtgctcc acgatgcggc tcttggcgcc atagatgtgc accatcgggg tggtgacggt
     2161 gaccggctgg ctcggatcgc cgcccatggc tcgctcgcgg tcgagcttgg cccacatgtt
     2221 ggggtcgaac cgccaggtcc agccctcgcc cttgccgcct tccagcggca ccttcttgag
     2281 tgaacgccgg gcgatgaagt cggcgatgta ggggttgccg gccggctgcg ggggcatcag
     2341 gcggaagcgc ccgagcgcgg cctccagggt ctcatagacc cggctcggcc ggtcgacggt
     2401 ggggatgttg cggatcgcct ccatctgcgc ctggcgtttg gcgagttcct ccggcggcgg
     2461 gccgaagccg gtgtcgacca tgatcgccgc atgcatccgc tcagggttgc ggacggcggc
     2521 gaagaacacc tggccgccgc cgaacgagtg gccgatgtag atgggcttgc ggccgccttc
     2581 gtagagcccg gtggcgcggc tcaccgcctc ggcgtcctcg gcgaagtcgc cgaagctgta
     2641 gcgctcgcgc cagtccgacg cgcccatgcc ggccagcgac atcgacgcca cccgatagtc
     2701 gtcggcgaag aacggcgcga taaagctcca ccagtcggcg tgggcggagt tgccgtgcac
     2761 gaacagcagg ccgggcttgc ccacctcgcc ccaggtcaag acctcgagct tcgagcccag
     2821 gctctcaaca aacacccgct ccggttcgcg cgcgatggcg tccttgaacc actgcggcga
     2881 gggcggtagc tcgcccctgt actcggccag cggcgcctgc acctcgggcg gcagcggagt
     2941 ctcggcgtgc accggccggt cgtcgtaagt ctccgccggc ttcacgtcct cagccatcta
     3001 cgcgtccttg aaaatccggt gggcccgcaa tccggggcgg cccgtcaata tagggtcgtg
     3061 actaacaagc gtttgaaaaa tggcaagcgg ttcgtccagg cgttggggcg gatcgaaatg
     3121 cagcttgagg cgcaaatcat ggcgcgcccc tctccattgc ggggaggaga gttgactgag
     3181 ctggagaggc aggctcgcat ccccggtgag gcttagggac cgctccgcgc cggcgcgctg
     3241 gagccagaca tcaggatcca ccccatgccg ccccgccccg actttatcgc ccactggtcg
     3301 gcgctggagg accctgagcc gcagcgctac ccgaacgaca ccgaggacca g
//
LOCUS       DATAJL010000271         2454 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92139,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000271 DATAJL010000000
VERSION     DATAJL010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92139"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..241
                     /locus_tag="VHN39_05245"
     CDS             <1..241
                     /locus_tag="VHN39_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5009 domain-containing protein"
                     /protein_id="HEX2815773.1"
                     /translation="FQVFGLNPLVIYLFSELFVTTLQRIDAAPGVGVYDWVGVNLFQA
                     VAPGPVGSLLCAIAYMLACWLLGYVLDRRRIVLRL"
     gene            357..2222
                     /locus_tag="VHN39_05250"
     CDS             357..2222
                     /locus_tag="VHN39_05250"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815774.1"
                     /translation="MGARDSESAGTPAPPDRSADLTLAKPPTQRFARIAILAALLLLA
                     VYTGIAITRLMHGPQSPTEQMVSLIVPLVVAFALGALLLLESRRVERAHAAYTDSEQR
                     FRMAVEAARCGIWEWDLGADQIFMSDVTAALFGWQGGVVEGQQVLERVSEGHRDGLRE
                     ALATAAVYGGFDVSFRVPSLSGGRPVWIDARGQGFGKSPEGGFARIIGVALDVTEERL
                     AQARAQAAETRLRDAIESVSEAFVLWDKQGRLLMCNKNYRSFFRLEPQVLKPGVARED
                     VEAKARLAVRQEFPALGGRKGVREAELVDGRWVQISERTTAEGGLVVTAADITALKAQ
                     EEARRVNEDELRRAVVNLERSQEQLSELARKYENEKVRAEGANQAKSEFLANMSHELR
                     TPLNAINGFSEIMVAEMYGPLGDARYKDYARDILVSGQHLLALINDVLDMSKIEAGKM
                     NLRFEPVSLDDVAEDALRLVRNRAEAAGLALRLDFNDLPEVEADYRAIKQVLLNLLSN
                     AIKFTPRGGLITVRAERREDPLGERVRISVQDTGIGIPADDLARLAKPFEQIESQHAK
                     TQQGTGLGLALTKALVEMHGGLLDLRSAPGQGTSAIFSLPVHQSSVALTAAVAAS"
BASE COUNT          381 a          867 c          823 g          383 t
ORIGIN      
        1 tttccaggtg tttgggctca acccgctggt gatctacctg ttctcggaac tcttcgtgac
       61 gaccctgcag cggatcgacg cagcccccgg cgtcggggtc tacgactggg tcggcgttaa
      121 cctgtttcag gcggtggcgc ccggccccgt gggctcgctc ctctgcgcca tcgcctacat
      181 gctggcctgc tggcttttgg gctacgtcct ggaccgccgc cggatcgtct tacggctata
      241 aggcaggggc cgaccggccc ctcaaaagcg ccaaatggcg gtgacgctgt ttacccttac
      301 cgcgtagact cgcaggcgtt cggggtgatt tgcccttcag tcgggagtag cgacccttgg
      361 gggcacgcga cagcgaaagc gcgggcacgc cagcgccgcc ggatcggtcc gccgatctga
      421 cgctggccaa gccgccgacg cagcgctttg cgcgcatcgc aatccttgcc gccctgttgc
      481 tgctcgccgt ctataccggc atcgccatca ctcggctgat gcatgggccg cagagcccga
      541 ccgaacagat ggtgtccctg atcgtcccgc tggtggtggc cttcgcgctg ggcgccctgc
      601 tgctgctgga atcccgtcgg gtcgagcggg cgcacgcggc ctacaccgac agcgagcagc
      661 gcttccgcat ggcggtcgag gcggcgcgct gcggcatctg ggaatgggac ctgggcgccg
      721 atcagatctt catgtccgac gtcaccgcgg ccctgttcgg ctggcagggc ggcgtggtcg
      781 agggccaaca ggtgctggag cgggtctcag agggccaccg cgacggcctg cgcgaggccc
      841 tggcgaccgc ggccgtctat ggcggcttcg acgtctcctt ccgggtgccc agcctttcgg
      901 gcggccggcc ggtgtggatc gacgcccgcg gccagggctt cggcaagagc cccgagggcg
      961 gcttcgcccg catcatcggc gtcgccctcg acgtcaccga ggagcgcctc gcccaggccc
     1021 gcgcacaggc cgccgagacc cgcctgcgcg acgccatcga gagcgtctcg gaagccttcg
     1081 tgctctggga caagcagggt cgcctgctga tgtgcaacaa gaactaccgc tccttcttcc
     1141 gcctggagcc gcaggtgctg aagcccggcg tcgcccgcga ggacgtggag gccaaggctc
     1201 ggctcgccgt gcgccaggag ttcccggcgc tgggcggccg caagggcgtg cgcgaggccg
     1261 aactggtcga cggccgctgg gtgcagatct ccgagcgcac caccgccgag ggcggcctgg
     1321 tggtcaccgc cgccgacatc accgcgctca aggcccagga agaggcgcgc cgggtcaacg
     1381 aggacgaact gcgccgcgcc gtggtcaatc tggagcgcag ccaggagcag ctctcggaac
     1441 tggcccgcaa atacgagaac gaaaaggtcc gcgccgaggg cgccaaccag gccaagtccg
     1501 aattcctggc caatatgagc cacgaactgc gcacgccgct caacgccatc aacggctttt
     1561 ccgagatcat ggtggccgag atgtacgggc cgctcggcga cgcccgctac aaggactacg
     1621 cccgcgacat cctggtctcc ggtcagcacc ttctggccct gatcaacgac gtcctcgata
     1681 tgtcgaagat cgaggccggc aagatgaacc tgcgcttcga gccggtgtcg ctggacgatg
     1741 tggccgagga cgcgcttcgg ctggtgcgca accgcgccga ggccgcgggc ctggcgctcc
     1801 gcctcgactt caacgacctg cccgaggtcg aggctgacta ccgcgccatc aaacaggtgc
     1861 tgttgaacct gctctccaac gccatcaagt tcaccccacg cggcggcctg atcaccgtgc
     1921 gcgccgagcg ccgcgaggac cccctgggcg agcgggtgcg gatcagcgtg caggacaccg
     1981 gcatcggcat cccggccgac gacctggcgc gcctggccaa gcccttcgag cagatcgaaa
     2041 gccagcatgc caagacccag cagggcacgg gcctgggcct ggcgctcacc aaggcgctgg
     2101 tggaaatgca cggcggcctg cttgatctgc gcagcgcgcc tggccagggc accagcgcga
     2161 tcttctcgct tcccgtccac cagtcgagcg tggccctgac cgcggcggtc gccgccagct
     2221 gaccctctcg gtacggctgt gattgacgcg ccctcgccga agggcggatc atggcgtgaa
     2281 gacgtaaggg gacgatccgt gaaacgccta ctggcctttg gtctcgccgc cttcatctgc
     2341 ggcctgcccg tttccggtct tgccggggac gccgcctaca agacaccccg caacggcttc
     2401 ggccagccgg acctgggcgg gaactggtcc aacgcgaccc tgacgcccca ggcc
//
LOCUS       DATAJL010000272         1799 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_66287,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000272 DATAJL010000000
VERSION     DATAJL010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66287"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VHN39_05255"
     CDS             <1..242
                     /locus_tag="VHN39_05255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEX2815775.1"
                     /translation="SARQLVAGYETLRPLSDLERSALPVLAHGAAMRFFLTRLADWGA
                     TPAGALVRPKDPLEYERKLAVHRSSPDLVLFGGAS"
     gene            269..721
                     /gene="rnhA"
                     /locus_tag="VHN39_05260"
     CDS             269..721
                     /gene="rnhA"
                     /locus_tag="VHN39_05260"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEX2815776.1"
                     /translation="MAPQVVIHTDGACSGNPGPGGWGAVLHYGAKEKELWGGELQTTN
                     NRMELMAAIQALEALKKPCKVELHTDSTYVMKGISEWIHAWKRRGWLTADRKPVKNDD
                     LWKRLDQARLRHEVDWRWVKGHAGHEFNERADVLARLGMTETLEANGR"
     gene            802..1278
                     /locus_tag="VHN39_05265"
     CDS             802..1278
                     /locus_tag="VHN39_05265"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX2815777.1"
                     /translation="MAAEPEDHPDIQVFDEIRYIEHLVRTAIARKLPVGLTYPQFEVM
                     NLLSRRGDGITPLEIARALQMTKSGLTNTLHRLYARKLIRVEHCEADGRRKRIWLTPE
                     GRQAYVQAMVALRPRMEGLRDGFTQKEFRDALPFLKALRTWLGEMHEERVGEMRGA"
     gene            complement(1352..>1799)
                     /locus_tag="VHN39_05270"
     CDS             complement(1352..>1799)
                     /locus_tag="VHN39_05270"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815778.1"
                     /translation="ALYFVADLAHPQTLSQLVNIVTGTSYTFGFDVYLPQNGANNGND
                     ATLSATVGGLTFADFAASATPATTWMHFAGAGTAAITGPVTFEFDFNSFGQPAKDFVV
                     DRVYFAPTADVGGVPEPATWAMMLVGFGGLGACLRRRRAGMALAAA"
BASE COUNT          316 a          571 c          647 g          265 t
ORIGIN      
        1 cctcggcgcg ccagctggtg gccggctacg agaccctgag accgctgtcc gatcttgaac
       61 gatcggcctt gccggtgctg gcgcacgggg cggcgatgcg cttcttcctg acccggctcg
      121 ccgactgggg cgcgacgccg gccggcgccc tggtcaggcc caaggacccg ctggagtacg
      181 agcgcaagct cgcggtccac cggtcgtcgc cggacctggt gctgttcggg ggtgcatcat
      241 gaccctgctt cgccaaggct tcgcagggct ggcgccgcag gtggtgatcc acaccgacgg
      301 ggcttgttcg ggcaatcccg gccccggcgg ctggggggcg gtgctgcact atggcgccaa
      361 ggaaaaggag ctctggggcg gggagcttca gaccaccaac aaccggatgg agctgatggc
      421 cgcgatccag gcgctggagg cgctgaagaa gccctgcaag gtcgagctgc acaccgacag
      481 cacctatgtg atgaagggca tctcggagtg gatccacgcc tggaaacggc gcggctggct
      541 gacggccgac aggaagccag tgaagaacga cgacctgtgg aagcgcctgg atcaggcccg
      601 attgcgtcac gaggtcgact ggcgctgggt gaagggccac gcgggccacg aattcaacga
      661 gcgggccgac gtcttggcgc ggcttggcat gaccgagacc ctggaggcca acggcagata
      721 gttcgatatc gaacttgttg ttcagcttcg aacggtatag gctgttcgaa tcgaaaccta
      781 tgcaagcctc aggaggccca catggccgcc gaaccggaag accatcccga catccaggtc
      841 ttcgacgaga tccgttacat tgaacatctg gtgaggacgg ccatcgcgcg caagctcccc
      901 gtcggcctga cctatcctca attcgaggtg atgaacctgc tatcgcggcg cggcgacggg
      961 atcacgccgc tggagatcgc gcgcgccctg cagatgacca agagcgggct caccaacacc
     1021 ctgcaccggc tctacgcgcg caagctgatc cgggtggagc actgcgaggc cgacggccgg
     1081 cgcaagcgca tctggctgac gcccgagggc cggcaggcct acgtccaggc gatggtcgcg
     1141 ctgcgccccc gcatggaggg cctgcgcgac ggcttcaccc agaaggagtt ccgcgacgcc
     1201 ctgccgttcc tgaaggcgct gcgcacctgg ctgggcgaga tgcacgaaga gcgggtcggg
     1261 gaaatgcgcg gcgcgtaaag ggcgcgcgcc caacgaaaag ccccggcgcc ttgcgacgcc
     1321 ggggctctga tttttggtat cgcggccgcg atcaggcggc ggcgagggcc attcccgcgc
     1381 ggcggcggcg caggcaggcg ccgagaccgc cgaagcccac gagcatcatc gcccaggtgg
     1441 cgggctcggg aacgccgccg acgtcggcgg tcggggcgaa gtagacccgg tcgaccacga
     1501 agtccttcgc gggttggccg aagctgttga agtcgaactc gaacgtcacc gggccggtga
     1561 tggccgcagt gccggcgccc gcgaaatgca tccaggtggt cgccggcgtc gcgctggccg
     1621 cgaagtcggc gaaggtcagg ccgccaaccg tcgcgctgag ggtggcgtcg ttgccgttgt
     1681 tggcgccgtt ctgcggcagg tagacgtcaa agccgaaggt gtagctggtc ccggtcacga
     1741 tgttgaccaa ctggctgagc gtctgcgggt gggccaggtc ggccacaaaa tagagcgcg
//
LOCUS       DATAJL010000273         2383 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_30275,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000273 DATAJL010000000
VERSION     DATAJL010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30275"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..894)
                     /locus_tag="VHN39_05275"
     CDS             complement(61..894)
                     /locus_tag="VHN39_05275"
                     /inference="COORDINATES: protein motif:HMM:NF012995.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arylamine N-acetyltransferase"
                     /protein_id="HEX2815779.1"
                     /translation="MDLQAYFNRIGYAGPARPDVATLTALHRAHLQAIPYENLDVQLG
                     RPLTIDPAAAIDKIVGRWRGGWCYEMNGVFGSALSEIGFKVTRVAGAAMREELGDIVV
                     GNHLVLLVEIDGQPWIADVGFGDGIQDPFPLRAGALTTGGYAYRVESLDDGWWRFHNH
                     EFGGAKSFDFRVEPADPDLLAGRCEWLQYDPTSHFVLNLIVQRYRGDTILQMRGRILR
                     TVTPAGVETRLLMSADELVTVLAEEFGLHVPEAAGLWPRIVARHEEVMAAEVTEAAVE
                     A"
     gene            complement(902..2119)
                     /locus_tag="VHN39_05280"
     CDS             complement(902..2119)
                     /locus_tag="VHN39_05280"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2815780.1"
                     /translation="MLPQRLRFGAFIAPFHPLDENPTLAIQRDLELVEWMDQLGFDEA
                     WIGEHHSAAYELIASPEVFIAAAAERTKHIRLGTGVSSLPYHHPLILADRINQLDHMT
                     RGRVMFGAGPGALVSDAFMMGIPVAKQRDRMDEALGCIVRLLRGEEVTHKSDWFELDK
                     ARLQMTPYSRPSVEIAVASQVSPTGARAAGQHGLGLLSLGATSTAGFNALASNWAIAT
                     EQANEHGHVMDRNAWRLVGPMHIAETREQAMEDVRFGLEKWIFYFREIANLPIVPDGD
                     EPIKAMMESGLAVIGTPDDAIARIQQLVDESGGGFGAFLLMAHNWANWGATRHSYELM
                     ARYVFPHFQTLNENRAASMAWVKENKEEFTTQVRGAVGARIVQHMMEKGADNISPQIV
                     ELITGAAAPPKAE"
     gene            complement(2173..>2383)
                     /locus_tag="VHN39_05285"
     CDS             complement(2173..>2383)
                     /locus_tag="VHN39_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815781.1"
                     /translation="VVTCVKAVAGILGNTPAVCRKAYIHPAVLAAYEARKLKLKATRS
                     DRAFELAVLKFLERVRDRRAKTSPP"
BASE COUNT          367 a          785 c          827 g          404 t
ORIGIN      
        1 ggacttcgtg gacagctatt ccgagccgcg caccttccga gtgggcttct cctaccggcg
       61 ctaggcctcg acggcggctt cggtcacctc ggcggccatg acctcttcgt ggcgggccac
      121 gatgcgcggc cacaggcccg cggcctccgg gacgtggagg ccgaattctt ccgccagcac
      181 ggtcaccagc tcatcggctg acatcagcag gcgcgtctct acgccggccg gcgtcaccgt
      241 gcgcaggatg cggccgcgca tctgcaggat ggtgtcgccg cgatagcgct ggacgatcag
      301 gttgaggacg aagtgcgagg ttgggtcgta ctgaagccac tcgcagcggc cggccaggag
      361 gtcgggatcg gcgggctcga ccctgaagtc gaaggatttc gcgcccccga attcatggtt
      421 gtggaaacgc caccagccgt catcaaggct ctcgacccgg taggcataac cgccggtcgt
      481 cagggcgccg gcgcggagcg gaaaggggtc ctggatgccg tcgccgaagc ccacgtcggc
      541 gatccagggc tggccgtcga tctccaccag caggaccagg tggttgccga ccacgatgtc
      601 gcccagctct tcacgcatgg cggcgccggc cacccgggtg accttgaacc caatttccga
      661 cagcgcggag ccgaagaccc cgttcatctc gtagcaccag ccgccgcgcc agcgcccgac
      721 gatcttgtcg atggccgcgg cggggtcgat ggtcaggggc cggcccagct ggacgtccag
      781 gttttcgtaa gggatcgcct gcaggtgggc gcggtggagc gccgtcaggg tcgccacatc
      841 cggccgcgcg gggccggcgt agccgatccg gttgaaatag gcctgcaggt ccatgcccga
      901 gctattcggc cttcggcggg gccgcggcgc cggtgataag ctccacgatc tgcgggctga
      961 tgttgtcggc gcccttttcc atcatgtgct gaacaatccg cgcgccgacg gcgccgcgca
     1021 cctgggtggt gaactcctcc ttgttctcct tgacccaggc catggaggcc gcgcggtttt
     1081 cgttgagggt ctggaagtgc gggaagacgt agcgggccat cagctcgtag gagtgccggg
     1141 tggcgcccca gttggcccag ttgtgggcca tcagcaggaa ggcgccgaac ccgccgccac
     1201 tctcgtccac tagctgctgg atgcgggcga tggcgtcgtc gggcgtgccg atgaccgcca
     1261 ggccgctttc catcatcgcc ttgatcggtt cgtcgccgtc cgggacgatc ggcaggttgg
     1321 cgatctcgcg gaagtagaag atccatttct ccaggccaaa acgaacatcc tccatggcct
     1381 gctcgcgggt ttcggcgatg tgcatggggc cgaccaggcg ccacgcgttg cggtccatga
     1441 cgtggccgtg ttcgttcgcc tgctcggtgg cgatggccca gttggacgcc aacgcgttga
     1501 atcccgccgt cgaggtcgcg cccagcgaca gcaggcccag gccgtgctgg cccgcggccc
     1561 gggcgccagt gggagagacc tggctggcca ccgcgatctc caccgagggc cgcgaatagg
     1621 gcgtcatctg caggcgcgcc ttgtcgagct cgaaccagtc ggacttgtgg gtgacctctt
     1681 caccgcgcag caggcgcacg atgcagccca gggcctcatc catgcggtcg cgctgcttgg
     1741 cgaccggtat acccatcatg aaggcgtcgg agaccagcgc gccgggaccc gcgccgaaca
     1801 tcacccgtcc gcgggtcatg tggtcgagct ggttgatccg atcggccagg atcaaggggt
     1861 gatgataggg cagcgacgag acgccggtgc ccagcctgat gtgcttcgtc cgctcggcgg
     1921 ccgcggcgat gaacacctcg gggctggcga tcagctcata ggcggcggag tggtgctcgc
     1981 cgatccaggc ctcgtcgaag ccaagctggt ccatccattc gaccagctcc aggtcccgct
     2041 ggatcgctag cgtcgggttc tcgtcgagcg gatggaacgg cgcgatgaag gcgccgaagc
     2101 gcaggcgctg gggcagcatg gggtgtcctc cgacattttg gggcgacctt aggcggcgga
     2161 cgtggcggaa ggctagggag gcgaggtctt cgcgcgcctg tcccgcaccc gctccaggaa
     2221 cttcagcacc gccaactcga acgcccggtc gctcctcgtc gccttcaact tcagcttcct
     2281 cgcctcataa gccgccagca ccgctgggtg gatgtaggct ttgcggcaga cggctggcgt
     2341 gttgccgagg atgccggcga cggccttcac gcaggtcacg acg
//
LOCUS       DATAJL010000274         4668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_30335,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000274 DATAJL010000000
VERSION     DATAJL010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4668
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30335"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VHN39_05290"
     CDS             <1..214
                     /locus_tag="VHN39_05290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815782.1"
                     /translation="RQGNPTGLGGGPFELAGHDEAGRVTLAFHETRLGRYVAHPGDRV
                     GAWDLTAKATDRKGERFTADRRLSWP"
     gene            205..2382
                     /locus_tag="VHN39_05295"
     CDS             205..2382
                     /locus_tag="VHN39_05295"
                     /EC_number="7.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015662 - P-type ion transporter activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0019829 - ATPase-coupled monoatomic cation
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEX2815783.1"
                     /translation="MALIQDLAPAPDLSAFLKRRAGARPSLDLLVKGARCAACLGKIE
                     RETAALSGVSASRLNLTTGKLTISFDTAAMADPGAVIATLERLGYPASPYDPGIAAES
                     LDREGRRLVLCLAVAAFGAMNTMMFSVPLWAGLFGQELGPATRVVMQWWCALVATPCV
                     LFAGRPFFESAWRSLKARRANMDVPISVGVLLTLAISFSETIQRGRDTYFDAAISLLF
                     LLLIGRWLDHQLKSRARSAAADLLALQAPSAVVLGPDGVEHRRPIDEVAVGDLLIVRP
                     GERIPVDGLVQSGFAELDASLLTGETRTLDAGPGQVCRAGALNLSGVLRLQALARSED
                     SAVAAVARLVEAGAQSKSRYVRLADRAAEFYVPVVHSAAALTFAGGWLLGLGPREALL
                     RAVAVLIITCPCALGLAVPAVQVAASARLFRRGILVKSGAALERLAEVNHVVFDKTGV
                     LTEGRPELVDATAATVALAAPLARASGHPLARSLAASAGPGPMADDVVEHPGLGVEGV
                     IDGRRARLGRAEFVGVTGSHVRETELWFGFDDAAKIRFGFSDRLRPDAAETVAALKAM
                     GLTVEVLSGDTPPAVAIAADGAGITQRRGGLTPIGKADAIDALQSGGHRVLMVGDGLN
                     DTAALARAHAAMAPGSALDASQNAADLVFSGQQLGAVVEALKVARSARRLALQNFGFA
                     AAYNAVAAPAAMLGLVNPFLAALAMSGSSLVVTLNALRLRSAK"
     gene            2379..2534
                     /gene="ccoS"
                     /locus_tag="VHN39_05300"
     CDS             2379..2534
                     /gene="ccoS"
                     /locus_tag="VHN39_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEX2815784.1"
                     /translation="MNIFMMLAPMSVFLGLIGIGAFWWTLRHGQYDDPAGDSARILLD
                     DPEDRPL"
     gene            2585..3961
                     /gene="hemN"
                     /locus_tag="VHN39_05305"
     CDS             2585..3961
                     /gene="hemN"
                     /locus_tag="VHN39_05305"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEX2815785.1"
                     /translation="MTVQTAITPNAAQLIAKYDGRTPRYTSYPTAVQFTPDVTAKTYR
                     QWLSELPAGDPVSLYLHIPFCARLCWYCGCNTRAVNTHQPIGDYVALMLAELDMLADA
                     LPGRLKASAVHLGGGTPNMLCADELTAIFGALKRAFRFTSDVEIAAELDPAVLTREWV
                     QAAASHGLSRASLGVQNLDHQVQAAVNRKDTIEEIEAAVGWLREAGVGSVNLDLMYGL
                     PHQTVENTLRTLDAILPLQPERLALFGYAHVPWMKAHQKLIHEAALPGPAERLDQSEA
                     AAERLLCEGYVRIGLDHFALSTDALAVAAFEGGLHRNFQGYTTDAAGTLLGLGASAIG
                     SLPQGFVQNVTQEMAWRAAVGANELPIARGVALSDDDRFRGEIIERLMCDFDVDLAAI
                     CATHGRSLAELAEPLARLEDFERDGLIRHEGVRLMVTERGRILVRSVCATFDAYLAPD
                     AQRHAKAI"
     gene            3969..4325
                     /locus_tag="VHN39_05310"
     CDS             3969..4325
                     /locus_tag="VHN39_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008264109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815786.1"
                     /translation="MANARRLWLFRALHSTIYAVMVACVLAVLYAGVTGARGRWLAVA
                     GSLVGVESLVFAANGWKCPLTAIAVRYGAEHGGLFDTFLPERLTRHTFQVFGPLIGLG
                     VVLLAARWLWFGWSGL"
     gene            complement(4322..>4668)
                     /locus_tag="VHN39_05315"
     CDS             complement(4322..>4668)
                     /locus_tag="VHN39_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2815787.1"
                     /translation="LKEHNEIRVAHQERAASLKARLVKAGLPVMPSVCHIVPVLVGDA
                     VHCKMISDILLEEHGIYVQPINYPTVPRGTERLRFTPSPAHTDEMMDHLVRSLQSLWV
                     SCNLARVGGMAA"
BASE COUNT          623 a         1662 c         1616 g          767 t
ORIGIN      
        1 acgccagggt aacccgaccg gcctcggtgg cgggccgttc gagctcgccg gtcacgacga
       61 ggccggtcgg gttaccctgg cgttccacga gactcggcta gggcgctatg tggcccatcc
      121 cggcgatcgg gtcggcgcct gggacctcac cgcgaaggcc actgaccgga aaggcgagcg
      181 cttcacggcc gaccggaggc tgtcgtggcc ctgatccagg acctcgctcc ggcccccgac
      241 ctgtccgcct ttctcaagcg ccgggctggc gcgaggccca gtctcgacct cctggtgaaa
      301 ggcgcgcgct gcgcggcctg cctcggcaag atcgagcgcg agaccgccgc gctttccggc
      361 gtcagcgcct cgcggctgaa cctgaccacg ggcaagctca cgatcagctt cgataccgcc
      421 gcgatggccg atccgggagc ggtgatcgcc acccttgagc gccttggcta ccccgcctcg
      481 ccctatgacc caggcatcgc ggccgaatcc ctggaccgcg agggccgcag gctggtcctg
      541 tgcctagccg tcgccgcctt cggcgccatg aacaccatga tgttctccgt gccgctctgg
      601 gccgggctat tcggccagga gctgggcccg gcgacccggg tggtgatgca gtggtggtgc
      661 gccctggtcg ccacgccctg cgtgctcttc gcgggccggc cgttcttcga gtccgcctgg
      721 cgttcgctga aggcgcgccg cgccaacatg gacgtgccga tctccgtggg cgtgctgctg
      781 acgctggcga tcagtttctc cgagacgatt cagcggggac gcgacaccta tttcgacgcc
      841 gcgatctcgc tgctgttcct gctgttgatc ggccgctggc tggaccatca gctaaagtcc
      901 cgcgcgcgca gcgccgccgc tgacctgttg gcgctgcagg cgccctcggc cgtggtgctg
      961 ggaccggacg gcgtcgaaca ccgccggccg atcgacgagg tggcggtcgg cgacctcctg
     1021 atcgtgcggc ccggcgagcg gataccagtg gatgggctgg tgcagtccgg cttcgcggaa
     1081 ctcgacgcct cgctcctgac cggcgagacg agaaccctcg acgccgggcc aggtcaggtc
     1141 tgccgcgccg gcgcgctcaa tctctccggc gtgctgcgcc tgcaggccct ggcccgctcg
     1201 gaggattccg ccgtcgcggc tgtcgcccgg ctggtcgagg ccggcgcgca gtcgaagtcg
     1261 agatacgtcc gcctcgccga ccgcgcggcg gagttctatg tgccggtcgt gcactcggct
     1321 gcggcgctga ccttcgccgg cggctggctt ctgggccttg gcccgcgcga ggcgctgttg
     1381 cgcgccgttg cggtgctgat catcacctgt ccctgtgcac tgggcctggc cgtgccggcc
     1441 gtccaggtcg ccgcctccgc ccgcctgttc cgccgcggga tcctggtgaa gtccggggcg
     1501 gcgcttgagc ggctggccga ggtcaaccat gtggtcttcg acaagaccgg cgtgctgacg
     1561 gagggccggc ccgagctcgt cgacgccacg gccgctaccg tcgccctggc cgcgccgctg
     1621 gcgcgcgcct cgggccatcc gctcgccagg tccctggcgg ccagcgccgg tccgggaccg
     1681 atggccgacg atgtcgtcga gcaccccggt cttggtgtgg agggcgtcat cgacgggcgc
     1741 cgcgcgcggc tgggccgcgc cgagttcgtg ggcgtcaccg gctcgcatgt ccgcgagacc
     1801 gagctgtggt tcggcttcga tgacgccgcc aagattcgct tcggcttctc ggaccgcctg
     1861 cggcccgacg ctgccgaaac cgtcgcagcc ctgaaggcca tggggctgac ggtcgaggtc
     1921 ctctcgggcg acacgccgcc ggccgtggcc atcgccgcgg acggggcggg catcacccag
     1981 cgacgcggcg gcctcacccc gatcggcaag gccgacgcga tcgacgcgct gcagtccggg
     2041 ggccacaggg tgttgatggt cggcgacggc ctgaacgaca ccgcagcgct cgcccgcgcg
     2101 cacgccgcca tggcccccgg ttcggcgctc gacgccagcc agaacgcggc tgacctggtg
     2161 ttttccggcc agcagctggg cgccgtggtc gaggcgctga aggtcgcgcg cagcgcgcgg
     2221 cggctggcgc tgcagaactt cggtttcgcc gcggcctaca acgccgtggc cgcgccggcg
     2281 gcgatgctgg gcctggtcaa tccgttcctg gcggcgctgg ccatgtcggg ctcgtccctg
     2341 gtcgtgaccc tcaatgcgct ccgactgagg tcagcgaaat gaacatcttc atgatgctgg
     2401 cccccatgtc ggtcttcctg ggcctgatcg gcatcggcgc cttctggtgg acgctgcgcc
     2461 acggccagta cgacgacccg gccggggact ccgcgcgcat cctgctggac gaccccgagg
     2521 atcggccgct ctagatttga tctgagtcac ggcgggccta acgcgatttt ggcatccatt
     2581 gcggatgacc gtccagaccg ccatcacccc gaacgccgcc cagctgatcg ccaagtacga
     2641 cggccgaacg ccgcgctaca ccagctatcc gaccgcggtg cagttcacgc ccgacgtcac
     2701 ggcgaaaacc tatcggcaat ggctgtcgga actgccggcc ggcgacccgg tctcgctcta
     2761 tcttcacatc ccgttctgcg cgcgactgtg ctggtactgc ggctgcaaca cccgcgcggt
     2821 gaacacccac cagccgatcg gcgactatgt ggcgctgatg ctggccgagc tcgacatgct
     2881 ggccgacgcc ctgccgggac gcctgaaggc cagcgccgtg catctgggcg gcggcacgcc
     2941 gaacatgctc tgcgccgacg agctgaccgc gatcttcgga gcgctgaagc gcgccttccg
     3001 cttcacctcc gacgtggaga tcgccgccga gctcgatccg gccgtcctca cccgcgaatg
     3061 ggtgcaggcc gccgcctccc acggcctgag ccgcgccagt ctcggggtgc agaacctcga
     3121 ccaccaggtg caagcggcgg tgaaccgcaa ggacaccatc gaggagatcg aggccgcggt
     3181 gggctggctg cgtgaagccg gcgtcggatc ggtcaacctc gacctcatgt acggcctgcc
     3241 gcaccagacg gtggagaaca ccctcaggac gctggacgcc atcctgccct tgcagcccga
     3301 gcgcctggcg ctgttcggct acgcccacgt gccgtggatg aaggcgcacc agaagctgat
     3361 ccacgaggcc gcccttcccg gccccgccga acgcctggac cagagcgagg ccgcggccga
     3421 gcggctgctc tgcgagggct atgtgcggat cggcctcgac cacttcgccc tttcgaccga
     3481 cgccttggcc gtggcggcct tcgagggcgg cctgcatcgt aacttccagg gctacaccac
     3541 cgacgcggcc ggaaccctgc tgggtctcgg cgcctcggcg atcgggtcgt tgccgcaggg
     3601 cttcgtccag aacgtgactc aggagatggc ctggcgcgcc gcggtgggcg ccaatgagct
     3661 gccgatcgcc cgcggcgtgg cgctcagcga tgacgaccgg ttccgcggcg agatcatcga
     3721 gcggctgatg tgcgatttcg atgtcgacct ggccgcgatc tgcgcgaccc atggccggtc
     3781 ccttgccgaa ctggccgaac ccctggcgcg gctggaggat ttcgagcgcg acggcctgat
     3841 ccgccatgag ggcgtgcgcc tgatggtcac cgagcgcggc cggattctgg tccgctcagt
     3901 ctgcgcgacg ttcgacgcct atctcgcgcc ggacgctcag cgacacgcaa aggcgatcta
     3961 gggccggcat ggccaacgcc cgtcgcctct ggctgttccg ggccctgcac tcgacgatct
     4021 atgctgtgat ggtcgcctgt gtcctcgccg tcctctacgc gggcgtaacc ggagcccgcg
     4081 gccggtggct ggcggtcgcg gggagcctcg tgggcgtcga gagcctggtc ttcgccgcta
     4141 acggatggaa atgcccgctc accgccatcg cggtcaggta cggcgccgag catggcggcc
     4201 tgttcgacac cttcctgccg gagcggttga cccggcatac cttccaggtg ttcgggccgc
     4261 tcatcggcct gggcgtcgtg ctgctggcgg cgcgctggct ctggttcggg tggtccggcc
     4321 tctaggcggc cattccgccg acgcgagcga ggttgcaact gacccacagg ctctgcagcg
     4381 acctcacaag gtgatccatc atctcgtcgg tgtgggccgg tgaaggggtg aagcgcaggc
     4441 gctcagttcc tctgggcacg gtcggatagt tgatcggctg gacgtagatg ccgtgctctt
     4501 ccagcaggat gtcggagatc atcttgcagt ggaccgcgtc gcccaccagc accggcacga
     4561 tgtggcagac ggagggcatc accggcaggc cggccttgac caggcgggcc ttcagggagg
     4621 ccgcccgctc ctggtgggcc acccggatct cgttgtgttc cttgagat
//
LOCUS       DATAJL010000275         2439 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_56008,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000275 DATAJL010000000
VERSION     DATAJL010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56008"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1543
                     /locus_tag="VHN39_05320"
     CDS             <1..1543
                     /locus_tag="VHN39_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PBP1A family penicillin-binding protein"
                     /protein_id="HEX2815788.1"
                     /translation="LTPNQTYRRKAQELILAIWLEAKFSKKQILELYLNRVYFGAGAY
                     GIEAASQRYFNKPAAQLDLKESALLAGMMKGPSRYSPVAASDRAARRATIVLDEMVRI
                     HAITPQQRDDALNSGPIRVNPVLANQRAQYFTDWVDDQVRHLVGEPTEDLVVETTLDL
                     PLQASAEQALQAGVAAAKNQGVQQAALISLDGEGRIRAYVGGVSYLQSQFDRATQARR
                     QAGSSFKPFVYLTAMEAGRTPDTPVVDEPITIGTWTPRNYTGKYLGPITLEIALRQSI
                     NTVAARLANEVGTSNVAATAHRLGISSPIQLDPSMALGAVEVSPLEMAQAYAPFSNGG
                     LFAKGYGIERIRTASGRVLYDHGVGNDERRAVIGQPALSYMIRMMRGVITSGTGTRAA
                     VKGYDLAGKSGTTSDYRDAWFMGYTGGFVTAVWVGRDDNTPMKKVTGGGVPAGIWHDY
                     MSQALPRLKTEGIPGADAPPALDQPTDALGAIINGVQDLLHGDHEADPAPAPQPRPSP
                     DEAPH"
     gene            complement(1619..2044)
                     /locus_tag="VHN39_05325"
     CDS             complement(1619..2044)
                     /locus_tag="VHN39_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815789.1"
                     /translation="MRRLIVLAALALGACGGGNKDQGARPPVPDVASNFSQPLDARGA
                     DPQWGLRIRGQQLTLDRPNQPDLVASAPGAVISAHAASWTGRLPDGRSMKVSLYASQC
                     ADAAGDLKYPFSAEVLLPDSAPLNGCAGAPASAAAVAKR"
     gene            2093..>2439
                     /locus_tag="VHN39_05330"
     CDS             2093..>2439
                     /locus_tag="VHN39_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HEX2815790.1"
                     /translation="MSRAPFSFLEFFAGGGMARLGLGPHWDCAFANDFDPVKAATYGA
                     NFADACDHFHEGDVWKLGPADLPGRADLAWASSPCQDFSLAGARAGLAGGRSGAFFGF
                     WRLIEGLAAEGRSP"
BASE COUNT          383 a          908 c          811 g          337 t
ORIGIN      
        1 cctgacgccc aaccagacct atcggcgcaa ggcccaggag ctgatcctgg ccatctggct
       61 ggaggccaag ttctccaaga agcagatcct cgaactctat ctgaaccggg tttatttcgg
      121 ggccggcgcc tatggcatcg aggccgcctc gcagcgctat ttcaacaagc ccgccgccca
      181 gctcgacctg aaggaaagcg ctctgctggc cgggatgatg aagggcccct cgcgctattc
      241 gccggtggcc gccagcgacc gcgccgcacg ccgcgcgacc atcgtcctgg acgagatggt
      301 ccgcatccac gccatcaccc cgcagcagcg cgacgacgcc ctcaactccg ggccgatccg
      361 ggtcaatccg gtgctggcca accagcgcgc gcagtacttc accgactggg tggacgatca
      421 ggtccgccat ctcgtcggcg agcccaccga ggacctggtg gtggaaacca cgctggacct
      481 gccgctgcag gcctcggccg aacaggccct gcaagccggc gtcgccgccg ccaagaacca
      541 gggggtgcag caggccgcgc tcatctcgct cgacggcgag ggccgcatcc gggcctatgt
      601 gggcggggtc agctacctgc agagccagtt cgaccgcgcg acccaggcgc gccgccaggc
      661 cggctcgtcc ttcaagccct tcgtctacct gaccgccatg gaggccggcc gcacgcccga
      721 caccccggtg gtcgacgagc cgatcaccat cggcacatgg acgccgcgca actacaccgg
      781 caaatatctg ggcccgatca cgttggagat cgcgcttcgg cagtcgatca acaccgtggc
      841 cgcgcgcctg gccaatgagg tcggcacctc caacgtcgcg gccaccgccc accggctcgg
      901 catctcctcc ccgatccagc tcgacccctc catggcgctc ggcgccgtcg aggtcagccc
      961 gctggagatg gcccaggcct atgcgccctt ctccaacggc ggcctgttcg ccaagggcta
     1021 cggcatcgag cgaatccgca cagcctcggg ccgcgtgctg tacgaccacg gggtcggcaa
     1081 cgacgagcgc cgcgcggtga tcggccagcc ggcgctctcc tacatgatcc gcatgatgcg
     1141 cggcgtgatc acgtcgggca ccggcacgcg cgcggcggtc aagggctacg atctggccgg
     1201 caagagcggc accaccagcg actaccgcga cgcctggttc atgggctaca ccggcggctt
     1261 cgtcaccgcc gtctgggtgg gccgcgacga caacaccccc atgaagaagg tcaccggcgg
     1321 cggcgtcccg gccggcatct ggcacgacta catgagccag gccctgccgc gcctgaagac
     1381 cgaaggcatc cccggcgccg acgccccgcc ggccctcgac cagcccaccg acgccctggg
     1441 cgcgatcatc aacggcgtgc aggacctgct gcatggcgac catgaggccg acccggcgcc
     1501 cgcgccgcag ccgcgcccca gccccgatga ggcgccgcac taggccgacc cagctgagcc
     1561 ctcaattccg ctcacccccg cgaaggccgg aatgagcggt ggaatgggat ttaggaccct
     1621 agcgcttcgc gacggccgcg gcggacgcgg gcgcgccagc gcagccgttc agcggggctg
     1681 agtccggcag cagaacctcg gccgagaagg gatatttcag gtcgcccgcc gcgtcggcgc
     1741 actggctggc gtagaggctg accttcatcg accgcccatc gggcagcctg ccggtccagg
     1801 aggccgcgtg cgccgagatc accgcgccgg gggccgaggc gacaagatcc ggctggttcg
     1861 gacgatccag ggtcagctgc tgcccgcgaa tcctcaagcc ccactgcgga tcggcgccgc
     1921 gcgcgtcgag cggctggctg aagttgctgg cgacgtcggg gaccggcggc cgcgcgccct
     1981 ggtccttgtt gccgcccccg catgcgccga gcgctagggc ggcaagaacg atcaaccggc
     2041 gcatgcatgt gtcctttggg attgggcggc gcaggataga ctcaaacgcg tcatgagtcg
     2101 ggcgcccttc tccttcctgg aattcttcgc cggcggcggc atggcccggc tgggtcttgg
     2161 gccgcactgg gactgcgcct tcgccaacga cttcgacccg gtgaaggccg cgacctacgg
     2221 cgcgaacttc gccgacgcgt gcgatcactt ccacgagggc gacgtctgga agctggggcc
     2281 cgctgacctg cccggccggg ccgacctcgc ctgggcttcc agtccctgcc aggacttcag
     2341 cctggccggc gcgcgcgcgg ggctggcggg cggccgctcg ggggctttct tcggcttctg
     2401 gcggctcatc gaaggcctgg ccgccgaggg gcgcagccc
//
LOCUS       DATAJL010000276         3282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_4577,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000276 DATAJL010000000
VERSION     DATAJL010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4577"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1237)
                     /gene="iolC"
                     /locus_tag="VHN39_05335"
     CDS             complement(<1..1237)
                     /gene="iolC"
                     /locus_tag="VHN39_05335"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047590 - 5-dehydro-2-deoxygluconokinase
                     activity [Evidence IEA];
                     GO_process: GO:0019310 - inositol catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HEX2815791.1"
                     /translation="MADDGKTLDLLAIGRSSVDLYGQQVGGRLEDMGSFAKYVGGSPT
                     NTAIGGARLGLKTALLTRVGADHMGRFIREQLVREGVDVTSVLTDEARLTALVILGIR
                     DRETFPLIFYREDCADMALTAADVDEAQARAARAVLINGTHLSQAGVFECSMRAAALA
                     RESGGKVVFDVDYRPVLWGLTARDMGEDRFVAASAVTGILQRVLPACDLVVGTEEEIH
                     ILGGATDTLAALRAIRERTSALLVVKRGPQGCSAFPDAIPETLDEGVVGPGFGVEVFN
                     VLGAGDAFMSGFLRGWLKDLPLERCCELANAAGAIVVSRHGCAPAMPTWPEMQAFLAS
                     PDHPFRLREDADLEHIHWATTRAGTYDQLTVLAIDHRSQFEDMARELGVDVARIPVFK
                     RLALQALHEVAGGDPRFGIL"
     gene            1352..2329
                     /gene="iolG"
                     /locus_tag="VHN39_05340"
     CDS             1352..2329
                     /gene="iolG"
                     /locus_tag="VHN39_05340"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050112 - inositol 2-dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0019310 - inositol catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HEX2815792.1"
                     /translation="MHKIALIGAGRIGQIHAANAAAHPGLTLSHVVDPVADAALAVAR
                     KTGADVASLGAVLADPDVAGVIIASATDTHLDCCLAAHAAGKAIFCEKPIDMDLARAR
                     AAAGELAGARLFLGFNRRFDPNFQALKAQLAQGAVGALETLQITSNDPAPPPIAYVKV
                     SGGLFKDMAIHDFDMARWLLGEEPVEVFAWGGCLVDPAIGEAGDIDTARTMLKTASGK
                     LCVIANSRRSGFGYDQRIEAYGSTGMARADNVLESTVQVWAEGGARADRFQNFFLDRY
                     RDAYRQEMAHFADILGGATPSVGYADGLAALALAEAAAQSLQSGLPVIL"
     gene            complement(2337..>3282)
                     /locus_tag="VHN39_05345"
     CDS             complement(2337..>3282)
                     /locus_tag="VHN39_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX2815793.1"
                     /translation="AGAGDRAQASAADLKSMRLSLQADLADDYLTLRGLDAQLRLLET
                     TTAAYERALQLTQILHDGGAAAGLDVARAQTQVSTARAQITDIGAQRALMEHAIAALV
                     GESASSFSLAPVNADLPQPRVAVSAPSVLLQRRPDIAAAERRAAAANADVGVARAALF
                     PALALDGSAGWQTAGGINLLQAPNTYWMLGPQLVGAIFDGGRRKAGVAASRAAFDQAS
                     ANYRAAVLDAFRDVEDQMALANRLAAEARDQTDAVTAARRSVELADIRYRQGVATYLD
                     VVTAQTAALTAEQGAIQLTTRRLQASVNLTRALGGAWS"
BASE COUNT          455 a         1177 c         1175 g          475 t
ORIGIN      
        1 gcaatatgcc aaaccgcgga tcgccccctg cgacctcatg cagcgcctgc agcgccaggc
       61 gcttgaagac cgggatacgg gccacgtcga cgcccagttc gcgggccatg tcctcgaact
      121 ggctgcggtg gtcgatggcg agcacggtca gttgatcgta ggtcccggcc cgggtcgtgg
      181 cccaatggat atgctccagg tctgcgtcct cgcgcagccg gaacgggtgg tcgggactgg
      241 ccaggaaggc ctgcatctcc ggccaggtgg gcatggccgg cgcgcagccg tggcgggaga
      301 ccacgatggc gcctgcggca ttggccagct cgcagcagcg ctccagcggc aggtccttca
      361 gccagccccg caggaagccg ctcatgaagg cgtcgccggc ccccagtacg ttgaacacct
      421 ctacgccgaa gcccgggccg acgacgccct cgtccagggt ctccgggatc gcgtccggga
      481 aggccgagca tccctgcggg ccgcgtttga cgaccagcag ggccgacgtc cgttcgcgga
      541 tcgcccgcag tgcggcgagg gtgtcggtcg ccccgcccag gatgtggatc tcctcctcgg
      601 ttccgaccac caggtcgcag gcgggcagga cccgctgcag aatgccggtc accgcgctgg
      661 cggccacgaa gcggtcctcg cccatgtcgc gcgcggtcag gccccagagc accgggcggt
      721 agtccacgtc gaacaccacc tttccgccgg actctcgggc cagtgcggcg gcgcgcattg
      781 agcactcgaa gacgccggcc tgcgacaggt gggtgccgtt gatcagcacc gcgcgggcgg
      841 cccgcgcctg ggcctcgtcc acgtcagcgg cggtgagcgc catgtcggcg cagtcctcgc
      901 gatagaagat cagcgggaag gtctcgcggt cgcggatgcc caggatcacc agcgccgtca
      961 gccgcgcctc gtcggtcagc accgaggtca cgtcgacgcc ctcacggacc agctgctcgc
     1021 ggatgaagcg gcccatgtgg tcggcgccaa cgcgggtcag gagtgcggtt ttcaggccca
     1081 ggcgcgcgcc gccgatggcg gtgttggtcg ggctgccgcc gacgtatttg gcgaaggagc
     1141 ccatgtcctc cagccgcccg ccgacctgct ggccatagag gtccacgctg gagcggccga
     1201 tggcgaggag gtccagggtt ttgccgtcgt ccgccaagct cgcccccgcc tcgcgcgcta
     1261 caccgcgcgc gttgcgagaa tttgtaggcc acggcgccgg cccgggccac gtcttcttgt
     1321 cttggcgcgc gtttgctccc tagaagggac gatgcacaag atcgccctga tcggcgccgg
     1381 ccggatcggc cagatccacg ccgccaacgc cgccgcgcac cccggcctga cgctgagcca
     1441 tgtggtcgat ccggtcgccg acgccgctct ggcggtggcc cggaagaccg gcgccgacgt
     1501 cgcctccctg ggcgccgtcc tggccgaccc cgacgtggcc ggggtgatca tcgccagcgc
     1561 caccgacacc catctggact gttgcctggc ggcgcatgcg gccggcaagg cgatcttctg
     1621 cgagaagccc atcgacatgg acctcgcccg ggcccgcgcg gcggcgggcg agcttgcagg
     1681 cgcgcgcctg ttcctgggtt tcaaccggcg cttcgacccg aatttccagg ccttgaaggc
     1741 gcagttggcg cagggcgccg tgggggcgct ggagaccctg cagatcacca gcaacgaccc
     1801 ggccccgccg cccatcgcct acgtgaaggt gtccggcggg ctcttcaagg acatggccat
     1861 ccacgacttc gacatggccc gctggctctt gggcgaggag cccgtcgagg tgttcgcctg
     1921 gggggggtgc ctggtcgacc ccgccatcgg cgaggccggc gacatcgaca ccgcccgcac
     1981 gatgctgaag accgcctccg gcaagttgtg cgtgatcgcc aacagccggc gttcaggctt
     2041 cggctacgac cagcggatcg aggcctatgg ctcaaccggc atggcccgcg cggacaatgt
     2101 gctggagagc acggtgcagg tctgggccga aggcggcgcc cgggccgacc ggttccagaa
     2161 cttcttcctc gaccgctacc gcgacgccta ccgtcaggag atggcccact tcgccgacat
     2221 tctcggcggc gccacaccga gcgtgggcta tgccgacggt ctcgcggcgc ttgctctggc
     2281 ggaggccgcc gcccagtcgc tgcagtcggg cctgcccgtc atactatgac gacggctcag
     2341 ctccaggctc cgcccagcgc gcgggtcagg ttcacgctgg cctgcaggcg gcgcgtggtg
     2401 agctggatcg cgccctgctc agcggtcagc gcggccgtct gtgccgtcac cacatcgagg
     2461 taggtggcga cgccctggcg atagcggatg tccgccagct cgacgctgcg acgggccgcg
     2521 gtcacggcat cggtctggtc ccgggcctca gccgccagcc ggttggcgag ggccatctgg
     2581 tcctccacgt cacggaaggc gtccagcacc gcggcccggt agttcgcgct ggcctggtcg
     2641 aaggccgcgc ggctggccgc gacgcctgcc ttgcgccggc cgccgtcgaa gatcgcgccc
     2701 accagctgag gcccgagcat ccagtaggtg ttgggggcct gcagcagatt gatcccgccg
     2761 gcggtctgcc aaccggccga gccgtcgagc gccagggccg ggaacagggc cgcgcgcgcc
     2821 acgccgacgt cggcgttggc cgccgcggcg cgacgctcgg ccgcggcgat gtcggggcgg
     2881 cgctgcagca ggaccgatgg cgcactcacc gccaccctcg gctgcggaag gtcggcgttg
     2941 accggcgcca ggctgaagct cgaggcgctc tcgcccacca gggcggcgat agcgtgctcc
     3001 atcagggcgc gctgcgcccc aatgtcggtg atctgggccc gggcggtgga gacctgggtc
     3061 tgagcgcgcg cgacgtccag gcccgcagcg gcgccgccgt cgtggaggat ctgggtgagc
     3121 tgcaacgcgc gctcgtaggc cgccgtcgtg gtctccagga ggcgaagctg ggcgtccagg
     3181 ccgcgcaggg tcaggtaatc gtcggcgagg tcggcctgca ggctgaggcg catggatttc
     3241 aggtccgccg cgctcgcctg ggcccgatcg ccggcccccg cc
//
LOCUS       DATAJL010000277         3366 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79459,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000277 DATAJL010000000
VERSION     DATAJL010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3366
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79459"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..938
                     /locus_tag="VHN39_05350"
     CDS             <1..938
                     /locus_tag="VHN39_05350"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX2815794.1"
                     /translation="PEFFDAAHVCVDRINYYPTADVVSAERRVQRGELDLNSTFQSNR
                     LQHLKAAMPGYARPHLTLASYYLGFNTRDVKPLKDIRVRRALSEAIDRDFITGKLQRA
                     GQQPAYSFVPPGVANYAYGAQTRWARESFPERQAEARTLLSQAGYGPGHSLKLEIKAP
                     NATETLLLMEAAQADWRAIGVEATIVQNEGQIAFAAYRDRDFQVGAMAWYADFNDPMT
                     FLSLLKSDTGAQNYGDYKNPAYDALLAQADQEPDAARRGRTLSQAEQIMLDDEAMAPV
                     NFIVSRSLVNPKVTGWIDNPLNFHRARWLCVKRAS"
     gene            complement(935..1240)
                     /locus_tag="VHN39_05355"
     CDS             complement(935..1240)
                     /locus_tag="VHN39_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HEX2815795.1"
                     /translation="MRNKLIATLVCSALAVTAALPTVAQAERHRVKVCRDVSSRGSRN
                     TGTVVGAVAGGLAGNALSHGGGKTGGTLIGAGLGAVAGHQIAKHNDTHVRCHWEYRD"
     gene            complement(1308..2096)
                     /locus_tag="VHN39_05360"
     CDS             complement(1308..2096)
                     /locus_tag="VHN39_05360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815796.1"
                     /translation="MKASRSRIVAAAALVLAGLAAGAARAADEEIQVYMDEIGAVHMP
                     GLDVHLNYVPDGRTRADYPGEEASGGRFRITPEWSYALNPNLELGAYLPLAEITRGGD
                     LEIGGAKARIKWVAPRPVDQDWFWGLNFEIGKVRHALDLNPWNAELKGIVGVRKGPWT
                     LAANLNVDWVVSGPDAGSAPDLQLAFKAAYSLDKETSVGFETYNGIGTTKALGPLSHN
                     DNQTFLVLDRGFGKWDLNFGVGYGYGAPEDRWIVKAVIGVPIGG"
     gene            complement(2124..>3366)
                     /locus_tag="VHN39_05365"
     CDS             complement(2124..>3366)
                     /locus_tag="VHN39_05365"
                     /inference="COORDINATES: protein motif:HMM:NF018485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815797.1"
                     /translation="PRPVTFGNGIVVLLALAIFINYVDRGNLATAGPLMKDELHLSAS
                     KFGLLLSAFFWTYVPGQIVAGWMVEKLNAYRTYALGLALWSISTALTGVASTFSLLIA
                     LRLLLGVGESVAFPCSSQLIAQHLPQHRLGMANGLVAMGLSLGPAFGTFAGGMFMAHF
                     GWRNLFLYFGLASLLWLWPWLASTRHLSKADDEPKVDRAPPFRALMARREAWGAGIGH
                     FCNNYAFYFVISWLPLYLVKTRGFTVPQMAELGGLIYVVYAASSMVTGWLSDRWLAAG
                     GSVTRVRKGGMIAGHLMAASAMLGCMLGSAPVAIACLFLAGIAFGFTSPQLYSIGQTL
                     GGPRGGGKWIAFQNCIGNLAGIVAPIITGAVVDKTGEFTWAFAVAGVVSVVGALSWAT
                     MVGKIAPLAWPPLLPKAASAV"
BASE COUNT          605 a         1147 c         1134 g          480 t
ORIGIN      
        1 acccggagtt cttcgatgcg gcccacgtct gcgtcgaccg gatcaactac taccccaccg
       61 ccgacgtggt ctcggccgag cgccgggtgc agcggggcga gctcgacctc aactcgacct
      121 tccagtcgaa ccgcctgcag catctgaagg cggcgatgcc aggctatgcg cggccgcatc
      181 tgaccctcgc cagctactat ctcgggttca acacccgaga cgtaaagcct ctgaaggaca
      241 ttcgcgtccg ccgggccctc tccgaggcga tcgaccggga cttcatcacc gggaagctcc
      301 agagggctgg gcagcagccg gcctacagct tcgtgccgcc cggcgtcgcc aactatgcct
      361 atggcgccca gacccgctgg gcgcgggaga gcttccccga acgacaggcg gaggccagga
      421 cgctgctgtc ccaggcgggg tatgggcccg gccactcgct caagctggag atcaaggcgc
      481 ccaacgccac ggagaccctg ctgctgatgg aggccgccca ggccgattgg cgggcgatcg
      541 gggtcgaggc gaccatcgtg cagaacgaag ggcagatcgc cttcgccgcc taccgcgacc
      601 gggatttcca ggtcggcgcc atggcctggt acgccgattt caacgacccc atgacgttcc
      661 tgagcctgct caagtccgac accggcgcgc agaactacgg ggactacaag aacccggcgt
      721 atgacgccct gctggcccag gcggaccagg agcccgacgc cgcgcgccgg ggccggaccc
      781 tgtcacaggc cgaacagatc atgctcgacg acgaggcgat ggccccggtc aacttcatcg
      841 tcagccgcag cctagtgaac ccgaaggtca ccggctggat cgacaatcca ctgaatttcc
      901 accgagcccg ctggctctgc gtgaagcgcg ccagctagtc gcggtattcc cagtggcacc
      961 tgacgtgggt gtcgttgtgc ttggcgatct ggtggcccgc cacggcgccc aagccggcgc
     1021 cgatgagcgt gccgccggtc ttgccgccac catgggagag cgcgttgccg gcaagacccc
     1081 cggctacggc gccgaccacg gtgccggtgt ttctggagcc gcggctgctc acgtcgcggc
     1141 agaccttgac cctgtggcgt tcggcctggg cgacggtggg aagggcggcg gtcacggcga
     1201 gggccgagca cacgagggtc gcgataagct tattgcgcac gtgagggtct ccttgagggc
     1261 agcggacacg ctcggaacta aacccgccgt cacggcaaag gttgcactca gccgccgatg
     1321 ggcacgccga tgaccgcctt gacgatccag cggtcttccg gcgcgccgta gccgtagccg
     1381 acgccgaaat tcaggtccca tttcccgaag ccgcggtcca gcaccaggaa ggtctggttg
     1441 tcgttgtggg acagggggcc cagcgccttg gtcgtcccga tgccgttata ggtctcgaag
     1501 ccgacagagg tttccttgtc gaggctgtag gcagccttga acgccaactg caggtccggc
     1561 gccgacccgg cgtcgggacc ggagaccacc cagtcgacat tgaggttggc cgcaagcgtc
     1621 cagggcccct tgcgaacgcc gacgatcccc ttcagttcgg cgttccaggg gttcaggtcg
     1681 agcgcgtggc gcaccttgcc gatctcgaag ttgagacccc agaaccagtc ctggtccacc
     1741 ggtcgcggcg ccacccactt gatgcgcgcc ttggcgccgc cgatctcgag gtcgccgccc
     1801 cgggtgatct cggccagcgg caggtaggcg ccgagttcga ggttgggatt aagcgcatag
     1861 ctccactcag gcgtaattcg aaagcggccc cccgaggcct cctcgccggg atagtcggcc
     1921 cgggtgcggc cgtcggggac gtagttcagg tggacgtcga ggccgggcat atgcaccgcg
     1981 ccgatctcgt ccatatagac ttggatctcc tcgtcggccg cccgcgcggc gccggcggcg
     2041 agacctgcca gcaccagggc ggcggccgcg acaatcctcg agcgtgaagc cttcaactca
     2101 gaatctccca tggaggcgcg agcctagacc gccgacgcgg ccttggggag cagaggcggc
     2161 caagccagcg gggctatctt gccgaccatg gtggcccagg agagagcgcc cactaccgac
     2221 accaccccgg ccacggcgaa ggcccaggtg aattcgccgg tcttgtcgac caccgcgccg
     2281 gtgatgatcg gggcgacaat cccggccagg ttgccgatgc agttctggaa ggcgatccac
     2341 ttgccgccgc cgcgcggccc gcccagcgtc tggccaatcg aatagagctg cgggctggtg
     2401 aacccgaagg ctatgcccgc caggaagagg caggcgatcg ccaccggcgc gctgcccagc
     2461 atgcagccca gcatggccga ggcggccatg aggtgcccgg caatcatccc gcccttgcgc
     2521 acccgcgtca cagagccgcc cgccgccagc cagcggtccg agagccagcc ggtgaccatc
     2581 gaggaggccg cgtagaccac gtagatcagc ccgccgagct cggccatctg cggcacggtg
     2641 aacccgcggg tcttcaccag gtagagcggc agccaggaga tcacgaagta gaaggcgtag
     2701 ttgttgcaga agtggccgat gccggcgccc caggcctcgc ggcgggccat gagcgcgcgg
     2761 aagggcgggg cgcggtcgac cttgggctcg tcgtcggcct tggacagatg gcgcgtcgag
     2821 gccaaccacg gccagagcca cagcagcgag gccaggccga agtagaggaa caggttacgc
     2881 cagccgaaat gcgccatgaa catcccgccg gcgaaggtgc cgaaggccgg tcccagcgac
     2941 aggcccatgg ctaccaggcc gttggccatc cccaggcggt gctgcggcag gtgctgggcg
     3001 atcagctgag aggagcaggg gaaggcgacg ctctcgccga cgcccagcaa caggcgcagc
     3061 gcgataagca gcgaaaacgt gctggccacc ccggtgagcg cggtggatat cgaccacagc
     3121 gccaggccca gcgcataggt gcgataggcg ttgagcttct cgaccatcca ccctgccacg
     3181 atctggccgg gcacataggt ccagaagaac gccgagagca gcaggccgaa cttgctggcc
     3241 gacagatgaa gctcgtcctt catcagcggc cccgccgtcg cgaggtttcc gcggtcgacg
     3301 tagttgatga agatcgccag agccaacagc accacgatgc cgttgccgaa ggtcacgggc
     3361 cgaggc
//
LOCUS       DATAJL010000278         2272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_30403,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000278 DATAJL010000000
VERSION     DATAJL010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30403"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..278)
                     /locus_tag="VHN39_05370"
     CDS             complement(<1..278)
                     /locus_tag="VHN39_05370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815798.1"
                     /translation="MAVAVVGLLLVPILCRAARLQAGTKSASAALVIVIYVPGHGRFG
                     NEAERILAVCWSAARWRSRSAPWPGWGSDSGREGPRRLLPRRPQLDHFP"
     gene            complement(434..1720)
                     /locus_tag="VHN39_05375"
     CDS             complement(434..1720)
                     /locus_tag="VHN39_05375"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEX2815799.1"
                     /translation="MSAPKKMTLLDCVGIGINGIIGTGIFLLPAKVFAESGGASWISW
                     FAIGGVCLLVGLCFCEAAGREGRNGGPYLYASDAFGRWVGVGVGWMALAANVFAYAAV
                     ARGFGRNLSFLVPVLAETTPQIVLAMALILGLAFLNYRGIKPGALLSDFFSGAKLIPI
                     GLFVGVGLFFVDWHRLSLPPPTGAPQLTAIKLGGLAALFACTGFEYVPVPAGETDDPR
                     RNVPLALFGSLLGAVILYALVQIVFIGTHPNPALADKPLAEAASAFMGPWAGRFIAAG
                     SVVSAFGYLVAVALVAPRYLSSLGEEGALPPLLARTHGRYGTPHVSIWITALVCAGMA
                     IFTDFDRLADLNNAAVFAQYVPTCIAVIVLRRKRGPSSFPLPGGPLIPLLATAGCFIF
                     LVGTKSQDAIFSGWTLLVGLALHALWRLLRPTPAAA"
     gene            1842..2213
                     /gene="rpsL"
                     /locus_tag="VHN39_05380"
     CDS             1842..2213
                     /gene="rpsL"
                     /locus_tag="VHN39_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020185797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEX2815800.1"
                     /translation="MPTINQLIRKGRDKVIYKGKAPAMTRCPQKRGVCTRVYTTTPKK
                     PNSALRKVARVRLTNGMEVTSYIPGVGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTL
                     DSVGVAGRKQSRSKYGAKRPS"
BASE COUNT          447 a          761 c          777 g          287 t
ORIGIN      
        1 gggaaatgat caagctgtgg gcgccgcggg agaaggcggc gcgggccttc cctgccggag
       61 tcgcttcccc agccaggcca gggcgctgac cgtgagcgcc atcgcgcggc cgaccagcac
      121 accgccagga tgcgctccgc ctcgttgccg aagcggccat gtccggggac gtagatgacg
      181 atgaccaacg ccgcgctcgc cgatttggtg cccgcctgca gccgggccgc gcggcagagg
      241 atgggcacga gcaagagccc gaccaccgcc accgccaacc cagcgccaaa cgccgccgcc
      301 gttcccgccg ccaccgagca agccgatgag gttggcgaaa aagcgcacta cgcccgtgcg
      361 cagcgaggcg cgatagccaa gttcgctgac agcgccgcgg agtcgccaac cagcagcgca
      421 tcgcggaagt ccatcatgcg gcggccggcg tgggtcgcaa gagccgccag agcgcgtgca
      481 gtgcgaggcc caccagcagg gtccagccgg agaagatggc gtcttgagat ttggtgccga
      541 ccaggaagat gaagcagccg gcggtggcga gcagtggaat cagcgggccg ccgggcaggg
      601 gaaagctgct cgggccgcgc ttgcgccgga gcacgatgac cgcgatgcag gtgggaacgt
      661 actgcgcgaa gaccgccgcg ttgttcaagt cggccaggcg atcgaagtcg gtgaagatcg
      721 ccattcccgc gcagacgagc gcggtgatcc agatgctgac gtggggcgtg ccgtaccggc
      781 cgtgcgtgcg cgcgagcaaa ggaggcaggg caccttcttc tcccagcgaa gagagatagc
      841 ggggcgccac cagcgcgacc gccaccagat agccgaacgc cgagacgacc gagcccgccg
      901 cgatgaagcg cccggcccaa gggcccatga atgcgctcgc ggcctctgcc agcggcttgt
      961 cggcgagcgc cggattggga tgcgtgccga tgaagacgat ctgcaccagc gcgtagagga
     1021 tcaccgcacc cagcagagag ccaaagaggg cgagcggcac gttgcggcga gggtcgtcgg
     1081 tctctcccgc gggcaccggc acgtactcga agccggtgca ggcgaagagc gccgcgagcc
     1141 cgcccagctt gatggcggtg agctgcggtg cgccggtggg cggcggcaag gagagcctgt
     1201 gccagtcgac gaagaagagt ccgacgccga cgaagaggcc gatgggaatg agcttggcgc
     1261 cgctgaagaa gtcgctcagc agcgcgccag gcttgatgcc gcggtagttg agaaaggcga
     1321 ggccgaggat gagcgccatc gccagcacga tctgcggcgt ggtctcggcc agcaccggca
     1381 cgagaaaaga gaggttgcgg ccgaacccgc gcgcgacggc agcgtaggcg aagacgttgg
     1441 cggcgagcgc catccagccg acccccacgc cgacccagcg gccgaacgca tcgctggcgt
     1501 acagataagg cccgccgttg cgaccctccc ggcccgcggc ttcgcagaaa cagagcccga
     1561 ccagaaggca gacgccgccg atggcgaacc aggagatcca cgacgcgcct cccgattcgg
     1621 cgaagacctt ggccggcaga agaaagatgc cggtgccgat gatgccgttg atcccgatcc
     1681 cgacgcagtc caggagggtc atcttcttgg gagcgctcac cagcttgctt tagcacagcc
     1741 tcgcttgaca gcaggtcgcc cctgagtatt atcgcgcgcc cttgcgggac cccccgctcg
     1801 gaaccgatcc attttttgac tgctttttag aaaagagcac gatgccgacg atcaaccaac
     1861 tcatccgcaa gggccgcgac aaggtcatct acaaggggaa ggccccggcg atgacccgct
     1921 gcccgcagaa gcgcggcgtt tgcacccgcg tctacaccac cacccccaag aagccgaact
     1981 ccgcgttgcg caaggtcgcc cgcgtccggc tcaccaatgg gatggaagtg acgagctaca
     2041 ttccgggcgt cggccacaac ctgcaggagc actcggtcgt catgatccgc ggcggccgcg
     2101 tcaaggacct cccaggcgtt cgctaccaca tcatccgcgg cacgctcgac tccgtgggcg
     2161 tggccggtcg caagcagtcc cgctccaaat atggagccaa acgccctagc taacgggcca
     2221 cgaggcgacg ccgcctgttg ttttccggcg cctgcggcgc ctcataccag gg
//
LOCUS       DATAJL010000279         2135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117930,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000279 DATAJL010000000
VERSION     DATAJL010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2135
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117930"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VHN39_05385"
     CDS             complement(<1..232)
                     /locus_tag="VHN39_05385"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2815801.1"
                     /translation="MADLELRQDGEVVWATMNRPGRLNALSRGLVTELREFFVGLYWR
                     RDVRVVVLRGAGDAFCAGLDLKERGDPQAPRGI"
     gene            complement(235..1200)
                     /locus_tag="VHN39_05390"
     CDS             complement(235..1200)
                     /locus_tag="VHN39_05390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815802.1"
                     /translation="MPEFRTIDAGAAQIRVAIEGEGPLVLMVHGFPESWYSWRHQMGP
                     IAAAGFKAAAIDVRGYGGSDKPGEVAAYDMEALTADVAGVAKALQPDAPAILIGHDWG
                     APIVWNSALSRPEQFSAVAGLSVPFSGVPARPFTEIFTEAFTSKGHFFYQAWFQNVGP
                     PEAEAEADVRGFLRKFYYFICGDAPVGTRSQKKHGATMLEGLVDPEVFPAWLTPADLD
                     YYVGEFTASGFFGPISRYRNHERDFEWLQRFKGRTLDMPTLLIGGDKDPAFNGFGRIA
                     DPGAMMLQHVADLRGVHVLPGCGHWTQQERPAETTALLIDWLKGL"
     gene            1322..2128
                     /locus_tag="VHN39_05395"
     CDS             1322..2128
                     /locus_tag="VHN39_05395"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2815803.1"
                     /translation="MATTEVTTGADGVTLKIEAHVATITLDRPHRRNALNYRAYDQLE
                     AAFRAASDDAEVRCVVVTGADPAFCSGDDVGEIMAGPKRVSATPVAAPTATPAAIAAL
                     ECAKPVIAAVNGAAVGWGMELALFADIRIASEKAKFAELFVKRGLPCDVRGFHRLPAI
                     VGPAKAAELLFTGDVIDAAEALRIGLVSEVLSHAELMPRALALAARIAANPPLAVQRL
                     KEGLNRTAYGDPREIGAWAMGAIRDLMRSEDHKEGVASFLEKREPVFRGR"
BASE COUNT          350 a          739 c          714 g          332 t
ORIGIN      
        1 cgatcccgcg cggcgcctgc ggatcgcccc gctccttcag gtccaaaccg gcgcagaagg
       61 cgtcgcccgc gccgcgcagc accaccacgc gcacgtcccg ccgccaatag aggcccacga
      121 agaattcccg cagttccgtc accaggccgc gagaaagtgc gttcaggcgg ccgggccggt
      181 tcatggtcgc ccagaccact tcgccgtcct ggcgcagttc gagatcggcc acgctcagag
      241 ccccttcagc cagtcgatca acaaggcggt ggtctccgcc ggccgctcct gctgggtcca
      301 gtggccgcac ccgggcagga cgtggacgcc gcgcaggtcg gcgacgtgtt ggagcatcat
      361 ggcgcccggg tcggcgatgc ggccgaagcc gttgaacgcc ggatccttgt cgccgccgat
      421 caggagcgtc ggcatgtcga gcgtgcggcc cttgaaccgt tgcagccatt caaagtcgcg
      481 ctcgtgattg cgatagcggc tgatcggccc gaagaagccc gaggccgtga actcacccac
      541 gtagtagtcg aggtcggcgg gcgtcagcca ggcggggaag acctccggat cgaccaggcc
      601 ttccagcatg gtcgcgccgt gcttcttttg cgatctggtc ccgacgggcg catcgccaca
      661 aatgaagtaa tagaacttgc gcaggaagcc ccgcacgtcg gcctcagcct cggcctccgg
      721 cgggccgacg ttctggaacc aggcctggta gaagaagtgg cccttcgagg tgaaggcctc
      781 ggtgaatatc tctgtgaagg gcctggcggg cacgcctgag aacggcaccg agagcccggc
      841 caccgccgag aattgctccg ggcgtgacag cgccgagttc cagacgatgg gtgcgcccca
      901 gtcatggcca atcaggatcg cgggcgcatc cggctgcagg gccttggcga cgcccgccac
      961 gtccgccgtt agggcctcca tgtcgtaggc cgcgacctca cctggcttgt cggacccgcc
     1021 gtagccgcgc acatcgatgg ccgccgcttt gaaccccgcc gccgcgatcg gtcccatctg
     1081 gtggcgccac gaataccagc tctccggaaa gccatgcacc atcaggacca gcggcccctc
     1141 gccctcgatg gccacgcgga tctgggcggc gccggcgtct atcgtcctga attcgggcat
     1201 tttcgcctcg ctccctatgc ccgccatgct ccccgctggg cgccgtggtg gcaaggatga
     1261 ctttgcggaa gcgttgacct gacctgcccg cgtgcgagca ttgggttggg aggacggcgc
     1321 catggcgacg accgaagtca caacaggcgc cgatggcgtc accctgaaaa tcgaggcgca
     1381 cgtcgccacg atcaccctcg accgtccgca caggcgcaat gcgctgaact accgggctta
     1441 cgaccagttg gaggcggcgt tccgcgcggc gtcggatgac gccgaggtgc gctgcgtcgt
     1501 ggtgaccggc gccgatccgg ccttctgttc cggcgacgac gtgggcgaga tcatggctgg
     1561 gcccaagcgg gtctcggcca cacccgttgc ggcgccgacc gcgacacctg cggcgatcgc
     1621 cgcgctggaa tgcgccaagc cggtgatcgc cgcggtgaat ggcgcggccg tcggctgggg
     1681 gatggaactc gccctgttcg ccgacatcag gatcgcttcg gagaaggcga aattcgctga
     1741 gcttttcgtc aagcgcggcc tgccctgcga cgtccgaggc ttccatcggc tgccggccat
     1801 cgtcgggccc gccaaggccg ccgaactgct gttcaccggc gacgtcattg acgccgccga
     1861 agcgctgcgg attggcctgg tgagcgaggt cctgtcgcat gctgaactca tgccgcgggc
     1921 cctggcgtta gccgcccgca tcgccgccaa cccgccactc gccgtccagc ggctgaagga
     1981 aggcctgaac cgcaccgcct atggcgaccc gcgcgagatc ggcgcctggg ccatgggagc
     2041 catccgcgat ctaatgcgca gcgaggatca caaggaaggc gtggcgagct tcctggaaaa
     2101 acgcgagccg gtctttaggg ggcgctagcc gatga
//
LOCUS       DATAJL010000280         2279 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79478,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000280 DATAJL010000000
VERSION     DATAJL010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79478"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..762)
                     /locus_tag="VHN39_05400"
     CDS             complement(112..762)
                     /locus_tag="VHN39_05400"
                     /inference="COORDINATES: protein motif:HMM:NF043005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCE4755 family polysaccharide monooxygenase-like
                     protein"
                     /protein_id="HEX2815804.1"
                     /translation="MKRRIAAALVAGAVAVATPAAVWAHFILVTPKSWIEENVLGDPQ
                     KLGPCGGTTANAGTPTGAVTPVVGGELLHLKVKETIYHPGHFRIALSVLDRAELPADP
                     EDVTKDGPRGPVSVSAKIDPNPKPPVLLDGIFEHHDKAGTREFETDVKIPNINCDHCS
                     LQVIQFMEEHGINTDGRFTYHHCADLQVTANPKLKIDTLWPGQTKAKGKGKTKAKS"
     gene            complement(859..1236)
                     /locus_tag="VHN39_05405"
     CDS             complement(859..1236)
                     /locus_tag="VHN39_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018113198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEX2815805.1"
                     /translation="MVDAATVRRLALTLPEVVETSRGGDHISFEVTGGKGLVWTFMLR
                     VHPKKARIPDPTAVAIRCAIERKEMLIEAAPDRFFDDDHYRGYPSVLVRLPAIDEDEL
                     AELLRAAWRLSAPKALLERFPPD"
     gene            complement(1258..>2279)
                     /locus_tag="VHN39_05410"
     CDS             complement(1258..>2279)
                     /locus_tag="VHN39_05410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX2815806.1"
                     /translation="AEVAPRTAPALIFTDVPGDRTAQFDAAVAHAFGQPLTSKTYLRE
                     PFVTGRITKVRGAAVDVSRIPKQDRWAYDSDISMSAIGPQPENPGVLAGHWWPDSYAG
                     PPLVAMDVEVAKGEQIQVGDAVTLSVLGRDIDARVAVLRKVDFGGFGASFPLVVTPSA
                     VEGANLRQVAIAKASKAQEARAIHELGRDFPTVNVISVREQLEAATDLFDRLALAVRG
                     AAAVAALAGLLVLAGAIAARAQARTREAAVLKVLGASRAQILAAYILEYGAVGVIAGA
                     AGVALGYAAAWPVVVKVFHAKWSMDWAGVASLLAAASVVAAIGGLLAAFQALSKRPAP
                     ALRAE"
BASE COUNT          347 a          790 c          777 g          365 t
ORIGIN      
        1 atcctcggcc gcccccgcga cgaggcgagc gtcgtgaccc tcggagcggc cttcgaacgg
       61 gtctcgggct ggaacggccg cgcgcctgac ctgtcgggtt tcagctagcg gtcagctctt
      121 ggccttggtt tttcccttgc ccttggcctt ggtctgacct ggccaaagcg tatcgatctt
      181 cagcttcgga ttggcggtga cctgcaggtc ggcgcagtgg tggtaggtga atcgcccgtc
      241 cgtgttgatc ccgtgctcct ccatgaactg gatgacctgc agcgagcagt gatcgcagtt
      301 gatgttcgga atcttgacgt cggtctcgaa ctcccgcgtc cctgccttgt catggtgctc
      361 gaagatgccg tccagcagca ccggcggctt ggggttcgga tcgatcttgg cggacaccga
      421 caccgggccg cgggggccgt ccttggtcac gtcctccgga tcggccggca gctcggcgcg
      481 gtcgaggacg gagagtgcaa tccggaagtg accggggtga tagatggttt ccttgacctt
      541 gaggtgcagc aactccccgc cgacgacggg cgtgacggcg cccgtgggtg tcccggcatt
      601 ggcggttgtg ccgccgcacg gcccgagctt ctgaggatcg cccagcacgt tctcctcgat
      661 ccaggacttc ggggtcacca ggatgaagtg ggcccagacc gcggccggcg tggcgaccgc
      721 tacagcgccc gcgaccaggg cggcggcgat acgacgtttc ataggcaggt tcccctcatc
      781 tgttgtgacc caagcgtcgc ctaacattgc tccgcgcgcc acagatttcg ggctcgagac
      841 gatcccgcgg acgctcgctc agtccggcgg gaaacgttcc agcagggcct tgggcgcgga
      901 gaggcgccag gcggccctga gcaattccgc cagctcatcc tcgtcgatgg cgggcagcct
      961 gaccagcacc gacggataac cgcggtagtg atcatcatcg aagaaccggt ccggcgccgc
     1021 ctcgatcagc atctccttgc gttcgatcgc gcaccgtatg gccaccgccg tgggatccgg
     1081 aatccgggcc ttcttcgggt gcacgcggag catgaaggtc cagacgaggc ccttgccgcc
     1141 ggtcacctcg aaggaaatgt ggtcgccgcc gcgcgaggtc tcaacgactt cgggcaaggt
     1201 cagcgccagg cggcggacgg tggcggcatc gaccatgtcg gctccgcgct ccgtgggcta
     1261 ttcggctctc agagccggcg ccggccgctt ggagagcgcc tggaacgcgg cgagcaaacc
     1321 gccgatcgcg gccaccacag aagcggccgc cagcagggac gcgacgcccg cccagtccat
     1381 gctccacttg gcgtggaaca ccttgaccac caccggccag gccgcggcat agccgagcgc
     1441 caccccggcc gcgcctgcga tcacgccgac ggcgccatat tccaggatat aggcggccag
     1501 gatctgggcc cgcgaggcgc ccagcacctt gaggaccgcc gcttcgcgag tccgcgcctg
     1561 ggcccgggcg gcaatggccc ccgccaggac cagcaggccc gccagcgccg ccacggccgc
     1621 cgcgccccgc accgccagcg ccaggcggtc gaagagatcg gtggccgcct ccagctgctc
     1681 gcgcaccgag atcacgttca ccgtcgggaa gtcgcggccg agctcatgga tcgcccgggc
     1741 ctcctgcgcc ttggaagcct tggcgatggc gacctgcctg aggttggcgc cctcgaccgc
     1801 cgaaggcgtc accaccaacg ggaagcttgc gccaaatcct ccgaagtcga ccttgcggag
     1861 cacggccacg cgggcgtcga tgtcgcggcc cagcaccgac agggtcaccg cgtcgccgac
     1921 ctggatctgc tcgcccttgg ccacctcgac atccatggcg accagcggcg ggcctgcgta
     1981 gctgtcaggc caccaatggc cggcgagcac gcctggattc tcgggctgag gtccgatagc
     2041 cgacatgctg atgtcgctgt cgtaggccca gcggtcctgt ttggggatcc ggctgacgtc
     2101 caccgcggcg ccccgcacct tggtgatccg gccggtgacg aagggctcgc gcagataggt
     2161 cttcgaggtc agaggctgcc cgaacgcgtg ggccacggcg gcgtcgaact gcgccgtgcg
     2221 gtcgccgggg acgtcggtga agatcagggc tggcgcggtg cgcggggcga cctccgcca
//
LOCUS       DATAJL010000281         5850 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_43372,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000281 DATAJL010000000
VERSION     DATAJL010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5850
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43372"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            168..557
                     /locus_tag="VHN39_05415"
     CDS             168..557
                     /locus_tag="VHN39_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815807.1"
                     /translation="MSRFDRLFGAGVALASVLALAAPAASQPAKAYEGDWTGVLTDGV
                     HVVHVVLHVKSGADSLSAILDDPDEGLTLPATAIKTDGGEFSALFFQAGGELKGKLSA
                     DGGTLEGSWTKGTPIPLKLTRQAPAAH"
     gene            609..1388
                     /gene="xth"
                     /locus_tag="VHN39_05420"
     CDS             609..1388
                     /gene="xth"
                     /locus_tag="VHN39_05420"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008311 - double-stranded DNA 3'-5' DNA
                     exonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEX2815808.1"
                     /translation="MRIATWNVNSVNARLETVLKWFEAAQPDVACLQEIKCVDEKFPA
                     EAFERLGYNLAVHGQKSYNGVALLSKTPLEDVRRGLPDPGEEEQSRYLEAVISGPTPV
                     RVASIYLPNGNPVDTEKYPYKLAWMDRLNRHAQDLLKLEEPLVLTGDFNVIPEARDAE
                     FPANWEGDALFRPQTREAFRALKYLGLTDAYLEADGAPGAYTFWDYQAGAWQRNNGIR
                     IDHALLSPQAADLLSGVSIHRDVRSWDKPSDHVPFVIELDL"
     gene            1446..2087
                     /locus_tag="VHN39_05425"
     CDS             1446..2087
                     /locus_tag="VHN39_05425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815809.1"
                     /translation="MTRLLALLGVAGIAVTVLAGIARWRMNETRRIRRGLKVVLKGDT
                     HGFLVALGRGRGVGFNFTRNQVAVVWDAGAWGLVYALDELMGAEVIVDNLVVGRVHRG
                     EARRALDAFDAVERVALRLVFDDPGSPDFVLDLWLPEDEGRRDELPPAEAIAEANRWL
                     ARIEALLRRPITTRRPALTPAPAVTPPVAVEIPPSQPAFQLHADEEEDDAAAM"
     gene            complement(2093..2782)
                     /locus_tag="VHN39_05430"
     CDS             complement(2093..2782)
                     /locus_tag="VHN39_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEX2815810.1"
                     /translation="MKMLGLIGGMSAESTTVYYQTLTRLVRERLGGLHSAELILHSLD
                     FAPIAELQAEDDWDATGAILADAARGLEAAGAQAILICANTMHLNAPQVEAAVKAPLI
                     HIADATAVALKAGGVTRALLLATRFTMEKPFYRERLEAAGLGVLTPDPADRDRLHAII
                     YDELVVGVISEASKAVVLAMIEKGRAAGADGIIFGCTEIGLLLDPAQMPLPTVDTAVA
                     HCEAAVAFALG"
     gene            complement(2785..4521)
                     /gene="ilvD"
                     /locus_tag="VHN39_05435"
     CDS             complement(2785..4521)
                     /gene="ilvD"
                     /locus_tag="VHN39_05435"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEX2815811.1"
                     /translation="MHRKPDGSWDKARLPSRHTTEGPARAPHRSYYYAMGLGSREIAQ
                     PFVGVVSCWNEAAPCNTALMRQAHAVSTGVKAAGGTPRESCTITVTDGIAMGHEGMRS
                     SLVSRDLIADSVELTMRGHAYDALVGVAGCDKSLPGMMMAMLRLNVPSVFLYGGSILP
                     GRWGNRDVTVVDVFEGVGMHSAGKMSLEDLCDLEQHACPSDGACGGQFTANTMACVSE
                     AIGLALPLSASLPAPYESRDAYAVASGEAVMRLIETNLRPRDIVTLKSFENAAVVVAA
                     TGGSTNGGLHLPAMAHEAGIAFTLRDFAEIAARTPYIADLKPGGRYVAKDMGEAGGMP
                     MLLKTLLEGGFIHGDCMTVTGKTIAENLKDVVWRSDQDVIRPVSNPLSPTGGVVGLWG
                     SLAPDGAIVKVAGMQSHRSHRGPARVFDGEDACFAAVEAGDYRDGDVLVIRYEGAKGG
                     PGMREMLSTTAALSGQGRGDKVALITDGRFSGGTRGLCVGHIGPEAQAGGPIALVQDG
                     DIIAIDADAGTIELEVDPIELENRLRHWKPRVTGYGSGALWKYAQIVGPAHEGAVTHP
                     GAAAERHVYADI"
     gene            5158..>5850
                     /locus_tag="VHN39_05440"
     CDS             5158..>5850
                     /locus_tag="VHN39_05440"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEX2815812.1"
                     /translation="MTAERRSANLQDVPVAVTAFSARERAIEGITTVQDMTNFTPGLT
                     YSSQLDRPVMRGLARNNNIYLSDSAVAVYYDDFFSNSTFLVGRDDMLIDQVEVLLGPQ
                     GTLYGRNAVGGLINTISKRPQEDFGGEVRAIVGNFGYSKIEGTVTGPVAGIDGLTYRL
                     SAYDLNQTQGYFKNLTGPTEGDVRHDPYFDAQLQYKNDKNEVWLDAYILGFNKDRGGP
                     GGLLGIPTAGHYD"
BASE COUNT          966 a         2003 c         1943 g          938 t
ORIGIN      
        1 gctcatcccc gcggccgcgg ggaccgaggt gtttgtttca ggctcacctt cggtgcgacc
       61 ttgcaggcct ttgcccggcg ccagccgccc gatctgacag aagcttaact tgtaactccg
      121 tgcgcagcgg cggcgttatt ccgccctaac cgtcgggaag gaccgcaatg tcgcgcttcg
      181 acaggctatt tggcgcaggc gtcgccctgg cgtcagttct ggccctggcc gcgccggctg
      241 caagccagcc cgccaaggcc tacgagggcg attggacggg tgtcctcaca gacggcgtcc
      301 acgtggttca cgtcgtcctg catgtgaaga gcggcgctga ctcgctcagc gcgatcctgg
      361 atgatcccga cgaagggctc accctgcccg ccacggcgat caagaccgac ggcggtgaat
      421 tcagcgcgct gtttttccag gccggcggcg agttgaaagg caagctgtca gcggacggcg
      481 gtacgctcga gggaagctgg accaagggga ccccgatacc gctgaagttg acgcggcagg
      541 cgccagccgc ccattgagcc ggaaggggcg gaccgctagc gtcgcgcgca ccgccgccgg
      601 agccctcgat gcgcatcgcc acctggaacg tgaactcggt caatgcgcgc ctggagacgg
      661 tgctgaagtg gttcgaggcg gcccagccgg acgtggcctg cctgcaggag atcaagtgcg
      721 tcgacgagaa gttccccgcc gaggcctttg aacggctggg ctacaacctc gccgtccacg
      781 gtcagaaatc ctacaacggc gtggccctgc tctcgaagac cccgctggag gacgtccgcc
      841 ggggcctgcc cgatcccggc gaggaggagc agtcgcgcta cctcgaggcg gtgatctcgg
      901 gccccacgcc ggtccgcgtg gcctcgatct acctgcccaa cggcaatccg gtggacactg
      961 agaagtaccc ctacaagctc gcgtggatgg atcggctgaa ccgccatgcc caggacctcc
     1021 tcaagctgga ggagccgctg gtgctgaccg gcgacttcaa cgtcattccc gaggcccgcg
     1081 acgcggagtt ccccgcgaat tgggagggcg acgcgctgtt ccgcccgcag acccgcgagg
     1141 ccttccgggc gctgaagtat ctgggcctca ccgacgccta tctggaggcc gacggggcgc
     1201 ctggcgccta cacgttctgg gactatcagg ccggcgcctg gcagcggaac aacggcatcc
     1261 ggattgacca cgccctgctg tcgccccagg ccgcggacct gctctccggc gtcagcatcc
     1321 accgcgacgt gaggagctgg gacaagccct ccgatcacgt cccgttcgtg atcgaactgg
     1381 atctctaaaa tcctgcgcct tggggagact cagggcttgg gcttagcttc accgccatgg
     1441 acgaggtgac caggcttctg gcgctgctgg gcgtcgcggg gattgcggtc acggtgctgg
     1501 ccggcatcgc gcgttggcgc atgaatgaga cccgccggat ccgccggggc ctgaaggtcg
     1561 tcctgaaggg cgacacgcat ggcttcctgg tggcgctggg ccgcggccgc ggggtcggct
     1621 tcaacttcac gcgcaatcag gtggccgtgg tctgggacgc cggcgcctgg ggcctggtct
     1681 atgcgctcga cgagctgatg ggcgccgagg ttatcgtcga caatctggtg gttggccgcg
     1741 tgcatcgcgg cgaggcccgg cgcgcgctgg acgccttcga cgcggtggag cgggtggcgc
     1801 tgcgactggt gttcgacgac cccggcagcc ctgatttcgt gctcgacctg tggctgccgg
     1861 aggacgaggg ccggcgcgac gaactgccgc ccgccgaggc gatcgccgag gccaaccgct
     1921 ggctcgcccg catcgaggcc ctgctgcgcc ggccgatcac cacgcggcgt ccagcgctca
     1981 cgccggcgcc cgccgtcacc cctccagtcg ctgtggagat cccgccatcg cagccggcct
     2041 tccaactcca cgccgacgag gaggaagacg acgccgccgc gatgtgacgg ctctagccga
     2101 gggcgaacgc caccgccgcc tcgcaatggg ccaccgccgt gtcgacggtg ggcagcggca
     2161 tctgcgccgg atcgagcagc aggccgatct ccgtgcagcc gaagatgatc ccgtcggccc
     2221 cggccgcgcg gcccttctcg atcatcgcca acaccaccgc cttggacgcc tcgctgatca
     2281 cccccaccac cagttcatcg tagatgatgg cgtgcagccg atcgcggtcg gccgggtccg
     2341 gcgtcaggac acccagcccc gccgcctcca gccgctcgcg gtaaaaaggc ttctccatgg
     2401 tgaagcgggt ggcgagcagc agcgccctgg tcacgccgcc ggccttcagc gcgacggccg
     2461 tcgcgtcggc gatgtggatc agcggcgcct tgaccgcggc ttcaacctgc ggggcgttga
     2521 ggtgcatggt gttggcgcag atcaggatcg cctgggcgcc cgccgcctcc agcccccgcg
     2581 ccgcatcggc gaggatcgct ccggtggcgt cccaatcgtc ctcggcttgc agttcggcga
     2641 tgggcgcgaa gtccagggaa tgcaggatca gctcggccga atgcagcccg cccagccgct
     2701 cgcgcaccag ccgggtgagc gtctggtagt agaccgtcgt gctctcggcg ctcatcccgc
     2761 cgatcaggcc cagcatcttc atcgtcagat gtccgcgtag acatgccgct cggccgcggc
     2821 gcccgggtgg gtcaccgcgc cctcgtgggc ggggccgacg atctgggcgt atttccagag
     2881 cgcgccggag ccatagccgg tcactcgcgg cttccagtgg cgcaggcggt tttcgagctc
     2941 gatgggatcg acctccaact cgatggtccc ggcgtcggcg tcgatggcga tgatgtcgcc
     3001 gtcctggacg agcgcgatag ggccgccggc ctgggcttcc gggccgatgt ggccgacaca
     3061 gagaccgcgg gtgccgccag agaagcggcc gtcggtgatc agggccacct tgtcgccccg
     3121 gccctggccc gagagcgcgg ccgtggtgga cagcatctcg cgcatgccgg gcccgccctt
     3181 ggcgccctcg tagcggatca ccaggacgtc gccgtcccga tagtcgccgg cctcgaccgc
     3241 ggcgaagcag gcgtcctcgc cgtcgaacac ccgggcggga ccgcgatggc tgcggtgcga
     3301 ctgcatgccg gccaccttga cgatggcccc atccggggcc agcgatcccc acagtcccac
     3361 gaccccgccg gtcggcgaga gcgggttgga gaccggacgg atcacgtcct ggtcgctgcg
     3421 ccagaccacg tccttcaggt tctcggcaat ggtcttgccg gtgaccgtca tgcagtcgcc
     3481 gtggatgaac ccaccctcca gcagggtctt gagcagcatc ggcatgccgc ccgcctctcc
     3541 catgtccttg gccacatagc gtccgccggg cttcaggtcg gcgatatacg gggtccgggc
     3601 ggcgatctcg gcgaagtcgc gcagggtgaa ggcgatgccc gcttcgtgag ccatggccgg
     3661 caggtgcagg ccgccgttgg tcgacccacc ggtggccgcc acaacaaccg cggcgttctc
     3721 gaaggacttc agagtgacga tgtcgcgcgg gcgcagattc gtctcgatca ggcgcatgac
     3781 cgcctcgccc gaggccaccg cataggcgtc gcggctctcg tagggagccg gcagcgaggc
     3841 cgacagcggc agcgccaggc cgatcgcctc ggagacgcag gccatggtgt tggcagtgaa
     3901 ctggccccca caggccccgt ccgacgggca ggcgtgctgc tccaggtcgc agaggtcctc
     3961 aaggctcatc ttgccggccg agtgcatgcc gacgccttcg aagacgtcga ccacggtcac
     4021 gtcgcggttc ccccagcggc ccggcaggat cgagccgccg tagagaaaga cgctgggcac
     4081 gttcagccgc agcatggcca tcatcatccc tggcagggat ttgtcgcagc ccgccacgcc
     4141 caccagggcg tcgtaggcgt ggccgcgcat ggtcagctcg acggagtcgg cgatcagatc
     4201 gcggctgacc agggacgagc gcatgccttc gtgccccatg gcgatgccgt cggtgacggt
     4261 gatggtgcag gactcgcgcg gcgtgccgcc ggccgccttg acgcccgtcg acacggcgtg
     4321 ggcctggcgc atcagtgccg tgttgcaggg cgcggcctcg ttccagcagg acacgacgcc
     4381 cacgaagggc tgggcgatct cccgactgcc gaggcccatg gcgtagtagt aggaccggtg
     4441 tggcgcgcgc gccgggccct cggtcgtgtg acggctgggc agcctggcct tgtcccagct
     4501 tccgtcgggc ttgcgatgca tctgaaagcg cctcctaagt cgaggcgcct tccttaagcg
     4561 tgcggcgcag cgcgggaaag acctgcactg cgggagcctg cggcgcgcgg ggcgtcgcta
     4621 ttccggcgag ggcgcccgtt acccgcgtaa cgaatatgtc cacccgcaac ccaagcgcgc
     4681 tattccggtg cgcggtaaat cattgtttca taaggcgagt tcttcagaat tcgaaagtca
     4741 ggtatgacca ctggtccaga tatcgccaca atttcagcaa cgttatacga cgtataggca
     4801 ggtgttggtg acgttaggta atagtattgc atcgcacaat gcccgtcaaa tgagcacctt
     4861 tgttggaact cgaatgcccc gcaactgtgg cgctaaagac aacacaggta aggcatggta
     4921 acttatcgat gataacttaa ggttcctttg ttgacggact gtggccacgg tttcagcctc
     4981 cccctgaggc gcaggaaata gcgctcgtaa aacccctggg agacgaacca aatgcagtgg
     5041 aagcacgctc tcttggcgtc cagcgccttg ttgtccttag cgttgagcac gacagttcac
     5101 gctcaaacaa agcccgccac ggcggcggcc gcggccaata ccctcgaaga gcttgtggtg
     5161 acagccgaac gacgctcggc gaaccttcag gacgtgccgg tcgcggtgac ggcgttcagc
     5221 gcccgcgagc gcgccatcga gggcatcacc accgtccagg acatgaccaa cttcacgcct
     5281 ggcctgacct attccagcca gctggaccga ccggtcatgc ggggcctggc ccgcaacaac
     5341 aacatctacc tctcggacag cgcggtcgcg gtctactacg acgacttctt ctccaactcg
     5401 accttcctcg tcggccgcga cgatatgctg atcgatcagg tggaagtcct gctgggcccg
     5461 caaggcaccc tctacggccg caacgccgtc ggcggcctga tcaacaccat ttccaagcgc
     5521 ccgcaggaag acttcggcgg agaggtccgc gcgatcgtcg gaaacttcgg ctacagcaag
     5581 atcgagggca cggtcaccgg gccagtcgcc ggcatcgacg gcctgaccta tcggctgagc
     5641 gcctacgacc tcaaccagac ccagggctac ttcaagaacc tgaccggccc caccgagggc
     5701 gacgtccggc atgaccccta tttcgacgcc cagctgcagt acaagaacga caagaacgag
     5761 gtctggctgg acgcctatat cctgggcttc aacaaggacc gcggcggtcc aggcggcctc
     5821 ctgggcatcc cgacggccgg ccactacgac
//
LOCUS       DATAJL010000282         1581 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_117944,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000282 DATAJL010000000
VERSION     DATAJL010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117944"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1534)
                     /locus_tag="VHN39_05445"
     CDS             complement(<1..1534)
                     /locus_tag="VHN39_05445"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEX2815813.1"
                     /translation="MARYIFITGGVVSSLGKGLASAALGALLQARGYGVRLRKLDPYL
                     NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFTGVNATRNDNITTGQIYKTIIEKE
                     RRGDYLGATVQVIPHVTDEIKQFVLSDPGEGVDFVLVEIGGTVGDIEGLPFFEAIRQL
                     GQELPRGHACFIHLTLLPFIKTAGEMKTKPTQHSVKELRSIGIQPDILLCRCEMPIPD
                     GERKKLGLFCNVRASAVIQAMDSSNIYAVPLDYHEQGLDTEVLDVFGLSDAPAPNLAR
                     WESIAHILAHPDGEVNIAIVGKYTALTDAYKSLIEALAHGGVANNVRVKFDWIEGEAF
                     ERDEQMIGERLTGVHGVLVPGAFGERGSEGMIRAVKFAREHEIPYFGICFGMQMAMIE
                     AARNLAGIHQASSSEFGPTSEPIVGLMTEWVRGNETEVRAEGGELGGTMRCGAYEAVL
                     TPGSRVAEIYGTPTISERHRHRYEVNIGYREAIEGTGLKFTGLSPDGVLPELCERLDH
                     PWF"
BASE COUNT          252 a          513 c          531 g          285 t
ORIGIN      
        1 tgaaccacgg atggtcaagc cgctcacaga gttcgggcag aacgccgtcc ggcgacaggc
       61 cggtgaactt tagcccggtc ccctcgatgg cctcgcggta gccgatattg acctcgtagc
      121 ggtggcggtg gcgctcggag atggtcgggg ttccgtagat ctcggccacc cggctgccgg
      181 gcgtgagcac cgcctcgtag gccccgcagc gcatggtgcc gccgagttcg ccgccctcgg
      241 cgcggacttc cgtctcattg ccgcgcaccc attcggtcat caggccgacg atgggctccg
      301 aggtcggccc gaactccgag gacgaggcct ggtggatccc ggccaggttc cgcgccgcct
      361 cgatcatggc catctgcatg ccgaagcaga tgccgaaata agggatctcg tgctcacggg
      421 cgaacttcac cgcccggatc atcccctctg agccgcgctc gccgaaggcg ccggggacca
      481 ggacgccatg cacgccggtc aggcgctcgc cgatcatctg ttcgtcgcgc tcaaaggcct
      541 cgccctcgat ccagtcgaac ttcacccgca cattgttggc gacgccgccg tgcgccaggg
      601 cctcgatcag ggatttgtag gcgtcggtga gcgccgtgta cttgccgacg atggcgatgt
      661 tcacctcgcc gtccgggtgg gccaggatgt gggcgatgga ctcccagcgg gccagattgg
      721 gtgcgggcgc atcgctcagg ccgaagacgt ccagcacctc ggtgtccagc ccctgctcgt
      781 gatagtcgag cggcacggcg tagatgttgg agctatccat cgcctggatg acggcgctcg
      841 cccgcacgtt gcagaacagg cccagcttct ttcgctcccc gtcggggatc ggcatctcgc
      901 agcggcacag caggatgtcc ggctggatgc cgatggagcg caactccttg accgagtgct
      961 gggtgggctt ggtcttcatc tcgccggccg tcttgatgaa cggcaggagg gtcaggtgga
     1021 tgaagcaggc gtggccgcgc ggcaactcct ggcccagttg gcggatcgcc tcgaagaacg
     1081 gcaggccttc gatgtcgccc accgtgccgc cgatctcgac cagcacgaag tcgacgccct
     1141 cgcccggatc ggagagcacg aactgtttga tctcgtcggt gacgtgggga atcacctgga
     1201 ccgtcgcgcc cagatagtcg ccgcgccgct ccttctcgat gatggtctta tagatctggc
     1261 cggtggtgat gttgtcgttg cgggtggcgt tgacgccggt gaaccgctcg tagtggccaa
     1321 ggtccaggtc ggtctcggct ccgtcgtcgg tcacgaagac ttcgccgtgc tgataggggc
     1381 tcatggtccc cggatcgacg ttcagatagg ggtcgagctt gcgcagccgc acgccgtagc
     1441 cgcgcgcctg caaaagcgcg ccgagagcgg cggacgcgag acccttaccc aatgaggaga
     1501 ccacgccgcc ggtgatgaag atgtaccggg ccatgggcgt tcagcctaac accgattcgc
     1561 gcgcgaagcc gtatctttgt g
//
LOCUS       DATAJL010000283         5160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_43487,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000283 DATAJL010000000
VERSION     DATAJL010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5160
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43487"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..758
                     /locus_tag="VHN39_05450"
     CDS             <1..758
                     /locus_tag="VHN39_05450"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HEX2815814.1"
                     /translation="PVREAVLETIERLDAGTLRVATREADGTWITHQWAKQAILLFFR
                     LTPNSLVDVDAPGPYWDKVPLKFTGWDAARFETAGFRAVVGAVVRKGSFLSKGVVLTP
                     SFVNIGAYVGEGTMVDTWATIGSCAQIGSHCHISGGAGIGGVLEPLQANPTIIEDNCF
                     IGARAEVAEGVIVREGSVLSMGTFLTSTTPIIDRRTGETRLGEVPPYSVVVSGSKPNA
                     HDPSLPSTYCAVIMKTVDERTRSKTSINELLRD"
     gene            765..1130
                     /locus_tag="VHN39_05455"
     CDS             765..1130
                     /locus_tag="VHN39_05455"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX2815815.1"
                     /translation="MNPVAWFLFGLTVLLDVFGQTAFKLGLDRIADGAGGRAFWRGVA
                     TSPWVIAGFLGYCVEAVSWMYVLGHAPLSIVGPMAALSYVGAVLTGRLFLGERPLARR
                     WIGAGLVTLGAGIVGASLG"
     gene            1123..1554
                     /locus_tag="VHN39_05460"
     CDS             1123..1554
                     /locus_tag="VHN39_05460"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX2815816.1"
                     /translation="MADPVAHANPRPLWSAISGWLLFIAVETATQVAFKYAGATLDDR
                     SGLVHLIAQAAATPVVLLGFGLYFLGFLIWMTILKDADLGRAFPMTAIIYVSTLASAV
                     LLFHEMLNTTRIVGVMLIAVGVVILASDPGAPKSGPGPAAP"
     gene            1615..2556
                     /locus_tag="VHN39_05465"
     CDS             1615..2556
                     /locus_tag="VHN39_05465"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEX2815817.1"
                     /translation="MSPTVRSRRVFNVSAWDALPAALAVIQLALVGALFAAWPGLTWP
                     ARIGWLAIYAFSVGWNLNSIAHNFIHNAFFASRSLNRLMSLIITLALLSPQTMYRYVH
                     LKHHAGNADRPDDSGVTLDPLSIYQHGWDGKAEPMLSYVFLEFFRGDSPFELARRIGE
                     KRPAEARHARFEFWAVIAVYGAALVFGVFTGRWAFTPLMVVASCLGQCVSNLSGYYEH
                     LGGNPDKPIAWGVSTYGRLYNWIFLYNGYHAEHHYRPKIHWTKMVAFHRQIAAEQAAE
                     GVTVIAWAHVLGFLDPKTWKIATARRRRPRPLDGLPS"
     gene            2553..3476
                     /locus_tag="VHN39_05470"
     CDS             2553..3476
                     /locus_tag="VHN39_05470"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEX2815818.1"
                     /translation="MSERAKPRAHLGLFRYSAWDAIPAALAYAHLLLLAAFLLAWPIM
                     TWPERLAGAVAYSLAIGWSLDSVSHNFIHNPFFAWEPLNRLTSLVLTLSLGTPQTMYK
                     YVHMRHHAGNSDRIGADGRTVDPISLFQYGYDGKVEPTWSYVFRQFWRDDGPFTVARK
                     IRARRPKEARQALQEFWAIVGVYGVVLVLNWRFVLLLAPFYYLGHCLSFLIAWYEHAG
                     ADPDQPIATGVSTYEPVYNWAFLNNGFHAEHHHRPKVHWTQMAALREETRAEQAAAGV
                     RTLSVAHFLGFLDHKPTAVPTASPPKGQVSA"
     gene            complement(3473..3937)
                     /locus_tag="VHN39_05475"
     CDS             complement(3473..3937)
                     /locus_tag="VHN39_05475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815819.1"
                     /translation="MTDPAEVQLEGFIVKYEPQVAELTRSARAIMRARFPTAMELVYD
                     NYNFLAIGYGSSERASDCVVSLAVGPRGVSLSFYYGASVPDPTGRLMGSGNQNRFVRL
                     ETAETLREPVVEALIAAAAAQAKLPMPTEGEGRLIIKSVSAKQRPRRPGASA"
     gene            complement(3940..4422)
                     /locus_tag="VHN39_05480"
     CDS             complement(3940..4422)
                     /locus_tag="VHN39_05480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2815820.1"
                     /translation="MPKIDIAAAPTRFGTGYPPPYDAPCLDRKRWKLGDAAGLTQFGV
                     NLQRMAPGVWSSQRHWHTAEDEFVWVVSGELVLVTDEGEQVLQAGDCAGFPAGAPNGH
                     HLQNRSGEEAVVLEVGSRREAEDGCDYPDIDLMLKTGANEYSHKDGTPYLDTQTARSR
                     "
     gene            4421..>5160
                     /gene="dapE"
                     /locus_tag="VHN39_05485"
     CDS             4421..>5160
                     /gene="dapE"
                     /locus_tag="VHN39_05485"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEX2815821.1"
                     /translation="MGSFRSRTDATLAKTTPGASLIDAINLTKELIRRPSVTPADAGA
                     MDIVETTLAGLGFACRRMRFGEIENLYARYGTESPNLCFAGHTDVVPVGDAAAWSQGA
                     FDAAVVDGVLIGRGAADMKSAIAAFAAAAAKAIAAGPIAGSLSFLITGDEEGVATHGT
                     RMVVDALDLEDEVISHCVVGEPTSSAVFGDMIKIGRRGSINVEITIQGVQGHVAYPER
                     LDNAIHRLSALIEALIREPIDKGSTHFQP"
BASE COUNT          756 a         1903 c         1621 g          880 t
ORIGIN      
        1 gccccgtccg cgaggcggtg ctggagacta tcgagcgtct ggacgccggg acccttcgcg
       61 tcgcgacccg cgaggccgac gggacctgga tcacccacca gtgggccaag caggcgatcc
      121 tgctgttctt ccgcctgacc cccaacagtc tggtggatgt cgatgcgccg ggcccctact
      181 gggacaaggt cccgctgaag ttcactggct gggacgccgc ccgtttcgag accgccggct
      241 tccgcgccgt cgtcggcgcc gtcgtccgca agggctcgtt cctgtccaag ggcgtggtgc
      301 tcaccccctc cttcgtcaac atcggcgcct atgtgggcga agggaccatg gtcgacacat
      361 gggccacgat cggctcctgc gcccagatcg gctcccactg ccatatctcc ggcggcgcgg
      421 gcatcggcgg ggtgctggag cccctgcagg ccaatcccac gatcatcgag gacaactgct
      481 tcatcggagc ccgggccgag gtggccgaag gcgtcatcgt ccgcgagggc tcggtgctct
      541 ccatgggcac tttcctcacc tcgacgaccc cgatcatcga ccggcgcacc ggcgagacgc
      601 gcctgggcga ggtgccgccc tattcggtgg tggtttccgg gtccaagccc aacgctcacg
      661 acccgtcgct gccatcgacc tactgcgcgg tgatcatgaa gaccgtggac gaacgcaccc
      721 gctccaagac ctcgatcaac gagctcctgc gggactaggg cctcatgaac ccggtcgcct
      781 ggttcctctt cggcctgacc gtcctgctgg acgtgttcgg ccagacggcg ttcaagctgg
      841 gccttgaccg catcgccgac ggcgccgggg gccgggcctt ctggcgcggc gtggccacca
      901 gcccctgggt gatcgcgggc ttcctcggct actgcgtcga ggccgtctcc tggatgtatg
      961 tcctcggcca cgcgccgctc agcatcgtgg gccccatggc ggcgctctcc tacgtgggcg
     1021 cggtcctgac cggacggttg ttcctgggtg agcgcccgct cgcgcggcgc tggatcggcg
     1081 cgggactggt cacgctgggc gccggcatag tgggcgcgag ccttggctga tcccgtcgca
     1141 cacgccaacc ctcgccccct ttggagtgcc atcagcggat ggctgctgtt catcgccgtc
     1201 gagaccgcca cccaggtcgc tttcaaatac gccggcgcga cgctggacga ccgctcgggc
     1261 ctggttcatc tcatcgccca ggctgcggcg acgccggtcg tcctgctggg cttcggcctg
     1321 tactttctgg gcttcctgat ctggatgacg atcctcaagg acgccgacct gggccgcgcc
     1381 ttcccgatga ccgcgatcat ctacgtcagc acgctcgcca gcgccgtgct gctgttccat
     1441 gagatgctca acaccacgcg gatagtgggg gtgatgttga tcgcggtcgg cgtcgtcatc
     1501 ctagcgtcag atcccggtgc gccgaaatcc gggccgggtc cggccgcgcc gtgaactggc
     1561 gcgcctcttc gcgcggctga cttcggccgc atttgcggtc aggattgcgg ttctatgagt
     1621 ccgacggtcc gctctcgcag agtcttcaac gtcagcgcct gggacgcctt gcccgcggcc
     1681 ctggcggtga tccagcttgc cctggtcggc gcccttttcg ccgcctggcc cggcctcacc
     1741 tggccggcgc ggatcgggtg gctcgcgatc tacgccttca gcgtcggctg gaacctgaac
     1801 tccatcgccc acaacttcat ccacaacgcc ttcttcgcat cgcggagcct caaccggctg
     1861 atgagcctga tcatcacgct ggccctgctc tcgccgcaga ccatgtaccg ctacgtccat
     1921 ctgaagcatc acgccggcaa cgccgaccgg ccggacgact cgggcgtcac cctcgatccc
     1981 ctgtcgatct atcagcacgg ctgggacggg aaggccgagc cgatgctctc ctacgtcttc
     2041 ctggagtttt tccgcggcga cagccccttc gaactcgccc gccggatcgg cgagaagcgc
     2101 ccggccgaag cgcgccacgc caggttcgag ttctgggcgg tgatcgcggt ctatggcgcg
     2161 gcgctggtct tcggcgtctt caccggacgc tgggccttca cgcccctgat ggtggtcgcc
     2221 agctgcctcg gccagtgcgt ttccaacctc agcggctact acgagcacct gggcggcaac
     2281 ccggacaaac ccatcgcctg gggtgtttcc acctatggtc gcctctacaa ctggattttc
     2341 ctctacaacg gctaccacgc cgagcatcac taccggccca agatccactg gacgaagatg
     2401 gtcgccttcc accgccagat cgccgctgaa caggccgccg agggcgtgac cgtgatcgcc
     2461 tgggcccacg tcctgggctt cctcgatccc aagacctgga agatcgccac ggcgcgcagg
     2521 cgcaggcccc ggccgctgga cgggctcccc tcatgagcga gcgcgccaaa cccagggccc
     2581 acctcggcct cttccgctac tccgcctggg acgcgatccc cgcggcgctg gcctatgcgc
     2641 acctgctgct gctggcagcc ttcctcctgg cctggccgat catgacctgg cccgagcgcc
     2701 tcgccggcgc ggtcgcctac agcctcgcca tcggctggag cctggactcg gtcagccaca
     2761 acttcatcca caatcccttc ttcgcctggg agccgctgaa ccgcctgacc agtctggtgc
     2821 tgacgctcag cctcggtacg ccgcagacga tgtacaagta cgtccacatg cgccaccacg
     2881 ccggcaactc cgatcggatc ggcgcggatg gccgcacggt cgatcccatc tcgctctttc
     2941 agtacggcta cgacggcaag gtcgagccga cctggtccta cgtcttcagg cagttctggc
     3001 gcgacgacgg ccccttcacc gtggccagga agatccgcgc ccggcggccg aaggaggctc
     3061 ggcaggccct gcaggagttc tgggccatcg tcggcgtcta tggcgtggtc ctggtgctca
     3121 actggcgctt cgtcctgttg ctcgcgccct tctactacct gggtcactgc ctctcgttcc
     3181 tgatcgcctg gtacgagcac gccggcgccg atccggacca gcccatcgcc accggcgtct
     3241 ccacctatga gccggtctac aactgggcct tcctgaacaa cggcttccac gccgagcacc
     3301 accatcggcc caaggtccac tggacccaga tggccgccct gcgcgaggag acccgcgccg
     3361 aacaggccgc cgccggggtg cgcaccctct ccgtcgccca cttcctgggc ttcctggacc
     3421 acaagcccac ggccgtgccc accgcctcgc ccccgaaggg ccaggtcagc gcctaggctg
     3481 acgcgccggg ccggcgtggc cgctgcttgg cggagaccga cttgatgatc agccggccct
     3541 cgccctcggt cggcatgggc agcttggcct gggccgccgc cgcggcgatc agcgcttcca
     3601 ccaccggctc gcgcagggtc tcggcggtct caaggcgcac gaaacggttc tgattgcccg
     3661 accccattag ccgtccggtc gggtccggca cggaggcccc gtagtagaag ctcagcgaca
     3721 ccccgcgcgg ccccactgcc agcgagacga cacagtccga ggcgcgttcg ctggacccgt
     3781 agccgatcgc caggaaattg tagttgtcgt agacgagctc catcgccgtc ggaaaccgcg
     3841 cgcgcatgat cgcgcgggcc gatcgcgtca gctcggcgac ctgcggctcg tacttgacga
     3901 tgaagccctc gagttgcacc tcggccggat cggtcatcgc taccggctcc gcgccgtctg
     3961 ggtgtcgagg tagggcgtac cgtccttgtg gctgtactcg ttcgcgcccg tcttcagcat
     4021 caggtcgatg tccggatagt cgcagccgtc ctcggcctct cgccgcgagc ccacctccag
     4081 cacgaccgcc tcctcgcctg aacggttctg taggtgatga ccgttgggcg cgcccgccgg
     4141 aaagcccgcg cagtcgccgg cctgcagcac ctgctcgccc tcgtcggtga ccagcaccaa
     4201 ctcgccggag accacccaga cgaactcgtc ctccgccgtg tgccaatgcc gctggctcga
     4261 ccacactccg ggcgccatcc gctgcagatt gaccccgaac tgggtgaggc cggcggcgtc
     4321 gcccagcttc cagcgtttgc ggtccagaca gggcgcgtca tagggcggtg gataaccggt
     4381 cccgaaccgg gtgggcgcgg cggcgatgtc gatcttgggc atggggtcat tccggtctag
     4441 gacggacgcc acgttagcaa agaccacgcc gggggcgagc ttgatcgacg cgatcaacct
     4501 gacgaaagag ctgatccgcc gcccctcggt gacccccgcc gacgccgggg ccatggacat
     4561 cgtcgagacg accctcgccg gcctcggctt cgcctgccgg cgcatgaggt tcggcgagat
     4621 cgagaacctt tacgcgcgct acgggaccga gagccccaat ctctgcttcg ccggccacac
     4681 cgacgtggtg ccggtgggcg atgccgccgc ctggagccag ggcgccttcg acgccgcggt
     4741 ggtggacggc gtcctgatcg gccgcggggc cgccgacatg aagtccgcca tcgccgcctt
     4801 cgccgccgcc gccgccaagg ccatcgcggc tggcccgatc gccggctcgc tctccttcct
     4861 gatcaccggc gacgaggagg gcgtggcgac ccacggcacc aggatggtcg tcgatgcgct
     4921 ggatctcgag gacgaggtca tcagccactg cgtggtcggc gagcccacct ccagcgcggt
     4981 gttcggcgac atgatcaaga tcggccgccg cggctcgatc aacgtcgaga tcaccatcca
     5041 gggcgtccag ggccacgtgg cctatcccga gcggctcgac aacgcgatcc accgcctgtc
     5101 cgcgctgatc gaggccctca tacgtgagcc gatcgacaaa ggcagcacgc acttccagcc
//
LOCUS       DATAJL010000284         4031 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17734,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000284 DATAJL010000000
VERSION     DATAJL010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4031)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4031)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17734"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VHN39_05490"
     CDS             <1..639
                     /locus_tag="VHN39_05490"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815822.1"
                     /translation="GTLVALAGFEFKVSSGASTFMDFTGVETLTVGADGKIMTNDLVL
                     SSLGVLQGLTKLTPGDPGSALGYAWDASDVLIGLGSDLAAGDSRVITYSSTVSTFSRA
                     DCSLADESICLVAYSAFGDPVGRGGGVNDASFGGFGASLLGAFSPFGASPGITGVGFT
                     PTTFATPTFENGLLTFNTNGAGVPEPATWMSLIAGFGLLGAALRRRRVVAYN"
     gene            645..2603
                     /locus_tag="VHN39_05495"
     CDS             645..2603
                     /locus_tag="VHN39_05495"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HEX2815823.1"
                     /translation="MSDNAQPKDSSAYAYRAFISYSHRDKAVATRLHRTVESYRIPTK
                     LVGTVTPVGKVPRRLAPVFRDRDELPASADLGGELSAALRRSMFLMVICSPASSKSHW
                     VDQEILQFKRMHGDTRVLALIVGGTPYASDTPGREDEECFPRSLRFKLGPDGELSDTP
                     AEPIAADIRTDGDGRRLANLKLIAGLTGLKLADLVQRETQRRMRRLAAVTTGATIGMV
                     LTGGLAVYANQRRVEANEQRVIAQREAAAARAASDYLVGTFALSNPATENPRTITALT
                     ILGRSAERAHVELANQPDIQVRLIATLGRAYNNLGLFSEASAAVESSLPAIQKAGPEG
                     ANALTVLATAYLKQGALDKALATVHRAEALLGPDLKTHTVTRAQLAVIDGRVQTAASN
                     VKAGVAAFDRALAFYHASDNPPPGALATALNNRGLLLSDDGQFAAAEASLNQSLAIYR
                     RELGETHLSTGKTWFALAQNSFNAGKYAEAQTQIAHALKIERIVLDPDNSDLGDTLSM
                     QGQIQQETGDLPGAERSLREAIAIYRKAFHGKPHYLIGIADVYLGLIQSKRGDTKAAL
                     ATLDDAKHNYDVSYGKIHANHGDLLVNRAKVLAHAGRMDEARGDCKAGLVILSDKLGA
                     DSSYTKQMAATCVALAAPKPAAGRATGK"
     gene            complement(2613..>4031)
                     /locus_tag="VHN39_05500"
     CDS             complement(2613..>4031)
                     /locus_tag="VHN39_05500"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2815824.1"
                     /translation="PAINAATLALSSGRRQLATGLARAVVRRSLADPQQDYFSLATQA
                     EALVILGDIEGAAAALTEATAAPDADVGARSTTLLQLQRLLAATDDAPGVKTLLELIR
                     APAVAMFCGNIFMADPEIEGPLAAEMREVIARENVGFAYGALAAGSDILIAEELIKRG
                     TELHLVLPFIEADFIAQSVAPGGEAWLRRYDFCRSRAASLTLASHMSYVGEGAQFAYG
                     SKVTMGMARLRARHLHGEAIQLAIVEAAGASSTLSGSDITSWRAAGGRSVVVTAPSFK
                     RPVMPLAARSEVKRGTYGLIFADYPEFTKLDERVLPIFWEEIMAPAARVLERYAGMIR
                     QGNTWGDALFVVIDNAEAAASAAMDLCDAFAKADCAALGVPDGTSMRFALHYGVTYEG
                     HDPVSRRTTYYGTEVSRTARIEPVTPAGSVYVTEPFAAILEMEAGNRFVCNYVGKTPL
                     AKGYGVFPLYRLSRAVARPASG"
BASE COUNT          656 a         1416 c         1333 g          626 t
ORIGIN      
        1 ggcacgctcg tcgccctggc gggttttgag ttcaaggtct cgtccggcgc ctcgaccttc
       61 atggacttca ccggcgtgga aaccctgacc gtcggggccg acggcaagat catgaccaat
      121 gacctcgtgc tgagctctct cggcgtactt cagggcctga ccaagttgac gcctggcgat
      181 cccggatcgg cgctcggcta cgcctgggac gcttcggacg tcctgatcgg gctcggctca
      241 gatctcgcgg ctggcgacag ccgcgtcatc acctactcgt ccacggtcag caccttctca
      301 cgggccgatt gttcgctggc ggacgaaagc atctgcctgg tggcctattc cgccttcggc
      361 gacccggtcg gacgtggcgg cggagtcaac gacgcgagct tcggcggttt cggcgcaagc
      421 ttgctcggag cgttcagccc gttcggggcc tcgccgggga tcacgggcgt cggcttcacg
      481 cccacgactt tcgcgacccc gacctttgag aacggtctcc tgacattcaa caccaacggc
      541 gccggtgtgc cggaaccggc gacctggatg tcgttgatcg ccggctttgg gcttctcgga
      601 gcggcgttgc ggcgtcggcg ggtcgtcgcc tataactgag gttgatgtcg gataacgcgc
      661 agcccaagga ctcctcagcc tacgcctacc gcgcgttcat aagctacagc caccgcgaca
      721 aggcggttgc gacacggctc caccggacgg tggagtcgta ccgcattccg accaagctcg
      781 tcggaaccgt cacgcccgtc ggcaaggtgc cccggcgcct ggcgccggtc tttcgggacc
      841 gcgatgagtt gcccgcctct gccgacctgg ggggtgaact gagcgcggct ctgcggcgct
      901 ccatgttcct gatggtcatc tgctctccgg cgtcgtccaa gtcgcattgg gtcgaccagg
      961 aaatcctgca gttcaagcgg atgcacggcg atacccgggt gctcgctctg atcgtcggcg
     1021 ggacgcccta tgcgtccgac acccccggcc gtgaggacga ggagtgcttc ccccgcagcc
     1081 tgcggttcaa gcttggcccg gacggcgagc tatcggacac acccgccgaa ccgatcgccg
     1141 cggatatccg cacggatggc gatggccggc gcctcgccaa cctgaagctg atcgcgggtc
     1201 tgaccggcct caagttggcg gatctggtcc agcgcgagac ccagcgcagg atgcggcggc
     1261 tggcggcggt caccaccggc gccacgatcg gcatggtgct gaccggcggc ctggcggtct
     1321 acgccaacca acggcgcgtc gaagccaatg agcagcgggt gatcgcccag cgggaggccg
     1381 ccgcggcgcg agcggcgtcg gactatctgg tcggcacctt cgccctgtcc aatccagcca
     1441 ccgagaaccc gcgcaccatc acagccctga ccatcctggg ccgcagcgcc gagcgcgcgc
     1501 atgtcgaact ggccaaccag ccggacattc aggtccggct gatcgccacc ctgggccggg
     1561 cctacaacaa tcttgggctg ttcagcgagg ctagcgccgc ggtcgagtcc tcgcttccgg
     1621 ccatccagaa agccgggccc gaaggagcaa acgctctgac cgtgctggcg acggcctatc
     1681 tcaagcaggg cgcgctggac aaggcgctgg cgaccgttca ccgcgccgag gcgttgctgg
     1741 ggcccgatct caagacacac accgtgactc gcgcccagct cgccgtgatc gacggccgag
     1801 tgcagaccgc ggcctccaat gtgaaggccg gcgtcgccgc cttcgatcgg gcgctcgcct
     1861 tctaccacgc ctcggacaac cccccgccag gggcgctggc gaccgcgctc aataatcgtg
     1921 gcctcttgct atccgacgat ggacaattcg ccgccgccga ggcctccttg aaccaatccc
     1981 tggcgatcta tcgccgcgag ctgggcgaga cccacctgtc caccggcaag acctggttcg
     2041 cgctcgcgca gaactccttc aatgcgggga agtacgccga agcacagacc cagatcgccc
     2101 acgccttgaa gatcgagcgg atcgttctcg atcccgataa ttccgacctg ggggacaccc
     2161 tttcgatgca gggccagatc cagcaggaga cgggcgatct tcccggagcc gaacgctcgc
     2221 tgcgggaagc tatcgccatc taccgcaagg ccttccatgg caagccgcac tatctgatcg
     2281 gcatcgctga cgtttatctg ggcctgattc agtccaagcg cggcgacacc aaggccgctc
     2341 tcgccaccct ggacgacgcc aagcacaact acgatgtcag ctacgggaag atccacgcca
     2401 accacggcga cctcttggtg aaccgggcga aggtgctggc gcacgccggg cggatggacg
     2461 aggcgcgcgg cgactgcaag gccggccttg tgatcctcag cgacaagctc ggagctgact
     2521 ccagctacac caagcagatg gctgcgacct gcgtcgcact cgccgcgccg aaacccgcgg
     2581 ccggacgggc caccgggaag taggccaccc gatcagccgg acgccgggcg cgcaacggcg
     2641 cggctcagcc ggtacagcgg gaagacgccg tagcccttgg ccagcggggt cttgcccaca
     2701 tagttgcaga cgaaacggtt gcccgcctcc atctccagga tcgcggcgaa gggctcggtg
     2761 acatagacgc tgccggctgg ggtcaccggc tcgatccgcg cggttcgtga cacctcggtg
     2821 ccgtagtagg tggtccggcg gctcaccgga tcgtggccct cgtaagtcac gccgtagtgg
     2881 agggcgaaac gcatcgaggt gccgtcggga acgcccaggg ccgcgcagtc cgccttggcg
     2941 aacgcgtcgc acaggtccat ggccgccgag gcggcggcct cggcgttgtc gatgaccacg
     3001 aacagcgcgt caccccaggt gttgccctgc cggatcatcc cggcgtagcg ctccagcacc
     3061 cgcgcggccg gcgccatgat ctcttcccag aagatcggca gaacccgctc gtccagcttg
     3121 gtgaactccg ggtagtcggc gaaaatcagg ccgtaggtgc cgcgcttgac ctccgagcgg
     3181 gcggccagcg gcatcaccgg ccgcttgaag gacggcgccg tcaccaccac ggaccgcccg
     3241 cccgccgccc gccaggacgt gatgtcggag ccactgagcg tgctggaggc gccggccgcc
     3301 tctacgatgg ccagctggat ggcctcgcca tgcaggtggc gggccctcag ccgcgccatg
     3361 cccatggtca ccttggagcc gtaggcgaac tgcgcgccct cgccgacgta gctcatgtgg
     3421 ctggccagcg tcagggacgc ggcgcgcgac cggcagaagt cgtagcgccg caaccaggcc
     3481 tcgccgccgg gcgccaccga ctgggcgatg aagtcagcct cgatgaacgg taggaccagg
     3541 tgcagttcgg ttccgcgctt gatcagttcc tcggcgatca ggatgtcgct gcccgcggcg
     3601 agggcgccgt aggcgaagcc gacattctcc cgggcgatga cctcccgcat ctcggcggcc
     3661 agcggcccct cgatctccgg gtcggccatg aagatgttgc cgcagaacat ggctaccgcg
     3721 ggcgcccgga tcagctccag cagcgtcttg acgcccggcg catcatccgt ggcggcgagc
     3781 agtctctgga gctgcagaag cgtcgtcgag cgggcgccca catcggcgtc gggcgccgcc
     3841 gtcgcctcgg tcagggcggc ggccgcgccc tcgatgtcgc ccaggatcac cagcgcctcg
     3901 gcctgggtcg ccagcgagaa gtagtcctgc tggggatcgg ccaggctccg ccttacgacc
     3961 gcgcgcgcca ggccggtggc cagctggcgg cgtccggagc tcagcgccag ggtcgcggcg
     4021 ttgatggcgg g
//
LOCUS       DATAJL010000285         1653 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_56295,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000285 DATAJL010000000
VERSION     DATAJL010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56295"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VHN39_05505"
     CDS             complement(<1..224)
                     /locus_tag="VHN39_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006274061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2312 domain-containing protein"
                     /protein_id="HEX2815825.1"
                     /translation="MADDASAHPDVLNQAAQGQLKSIIERIERLEIEKAEVAEQIKEV
                     FAEAKGNGFDVKILRKVVRIRKQDRAKRLE"
     gene            372..959
                     /gene="folE"
                     /locus_tag="VHN39_05510"
     CDS             372..959
                     /gene="folE"
                     /locus_tag="VHN39_05510"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEX2815826.1"
                     /translation="MASKSPPTQAEAEAAVRTLIQWAGDDPDREGLLDTPARVARSYK
                     ELFAGYESDPKEYLERTFDEVGGYDELVILKDIRVVSFCEHHMLPFLGKAHVGYLPRN
                     RVVGISKLARVVHGFARRLQIQEKLTAQVAGAIQEILDPKGVGVVIVSEHSCMTMRGV
                     NTPGSRLTTSHLLGEVRDDPRTRQEFFDLVHSPDR"
     gene            complement(956..1579)
                     /locus_tag="VHN39_05515"
     CDS             complement(956..1579)
                     /locus_tag="VHN39_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEX2815827.1"
                     /translation="MPRPPPSQIRGVIWDVGNVIVRWDPRTLYSKIFPDPVERDRFLA
                     DVCTMAWHAPTDCGVTFADNCAALSARHPEHEAAIWAWKDRWCEMFSGPIPETEAAIE
                     ALQARGAAQFALSNMSHETVGGTFTMSPAFARLDGRIISGHEGVMKPDPAIFRLTCER
                     FGLAPADALFIDDSATNIDAARALGFHVHHFTDPAALRPVLEGFGLL"
     gene            complement(1590..>1653)
                     /locus_tag="VHN39_05520"
     CDS             complement(1590..>1653)
                     /locus_tag="VHN39_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014790280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribosomal protein bL36"
                     /protein_id="HEX2815828.1"
                     /translation="RKGVVYIINKTNPRFKAKQG"
BASE COUNT          276 a          521 c          585 g          271 t
ORIGIN      
        1 tcctccaggc gcttggcgcg gtcctgtttg cggatgcgca ccaccttgcg caggatcttg
       61 acgtcgaagc cgttgccctt ggcctcggcg aagacctcct tgatctgctc ggccacctcg
      121 gccttttcga tctccagccg ctcgatgcgc tcgatgatcg acttgagctg cccctgggcg
      181 gcctggttca gcacatcggg atgggcggag gcgtcgtcgg ccatgggaag cactcttatg
      241 agacggaggt ggactgcggc ggaccctatc ggcgggggcg gccgctgtca tgctggccat
      301 gaaccttgcc tgtggataag cccccataca ataagaggtg ggcggcggaa cgacgcggag
      361 agctctgagc catggccagc aagtccccac cgacccaggc cgaggcggaa gcggccgtcc
      421 gcaccctgat ccagtgggcg ggcgacgacc cggaccgcga gggcctgctg gacaccccgg
      481 cgcgggtggc gcggtcctac aaggagctgt tcgccggcta cgaaagcgac cccaaggaat
      541 acctggagcg cacgttcgac gaggtcggcg gctacgacga gctggtgatc ctgaaggaca
      601 tccgggtggt gagcttctgc gagcaccaca tgctgccctt cctgggcaag gcgcatgtgg
      661 gttacctgcc gaggaaccgg gtggtcggca tctccaagct cgcccgcgtg gtccacggct
      721 tcgcacggcg cctgcagatc caggagaagc tgacggccca ggtggccggc gcgatccagg
      781 agatcctcga tcccaagggc gtcggcgtgg tgatcgtctc cgagcacagc tgcatgacca
      841 tgcgcggggt caacacgcca ggctcgcgcc tgacgacgag ccaccttttg ggcgaggtcc
      901 gcgacgatcc gaggacgcgc caggagttct tcgacctggt gcacagcccg gaccgttaga
      961 gcaggccaaa tccctcgagg acgggccgga gcgccgccgg gtcggtgaaa tgatggacgt
     1021 ggaagcccag cgcccgggcc gcgtcgatgt tggtggcgct gtcgtcaatg aagagggcgt
     1081 cggctggcgc caggccgaac cgctcgcagg tcaggcggaa gatcgccggg tcgggcttca
     1141 tcaccccctc gtggccggag atgatccggc cgtcgagcct cgcgaacgcc gggctcatgg
     1201 tgaaggtccc gccgacggtc tcatggctca tgttggagag cgcgaattgc gccgcgccgc
     1261 gggcctgaag cgcctcgatg gccgcctcgg tctccgggat cgggccggag aacatctcgc
     1321 accagcggtc cttccaggcc cagatggcgg cttcatgctc ggggtggcgg gcgctcaacg
     1381 ccgcgcaatt gtcagcgaag gtcacgccgc agtcggtggg tgcgtgccag gccatggtac
     1441 agacgtcagc aaggaaccgg tcgcgctcga ccggatcggg aaagatcttg gaatagagcg
     1501 tgcgcgggtc ccagcgcacg atgacgttgc cgacgtccca gatgaccccc cgaatttgcg
     1561 aaggaggcgg ccggggcatc ggcgaggcgt cagccttgct tggctttgaa gcgcgggttt
     1621 gtcttgttga tgatgtaaac gacgcccttg cgg
//
LOCUS       DATAJL010000286         4030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79568,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000286 DATAJL010000000
VERSION     DATAJL010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4030
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79568"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(221..745)
                     /locus_tag="VHN39_05525"
     CDS             complement(221..745)
                     /locus_tag="VHN39_05525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815829.1"
                     /translation="MFEHWDSFFLLIGGAAGGLIGLLFIVVTLIRGGDTGLKLRGASV
                     YMTPTVAHLAGVLMLSALATAPGLSNSVAGVLYGAGATACLIFTGRALAMLVTGSIRS
                     THWSDTWGYGAAPFAASLALAVSAAAIWFAPNWAARGIAASVVAMLLIAIRNAWDLVT
                     WISAKGDLSSGPDG"
     gene            863..1138
                     /locus_tag="VHN39_05530"
     CDS             863..1138
                     /locus_tag="VHN39_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815830.1"
                     /translation="MCGRIAETTDPMAEFQVNTISAPPPVSHVQQIQSPKPPKVQSDH
                     KPANPVTSSRGPAVVLSGALAKSVEKNGQQARAEPPPPTGQHINHVI"
     gene            complement(1151..2215)
                     /locus_tag="VHN39_05535"
     CDS             complement(1151..2215)
                     /locus_tag="VHN39_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815831.1"
                     /translation="MTDDPMTATRGLLLPRGVVQPFFLLHRHDDLHIIGFFEGHPAYE
                     AVEAMIQRRPAGAWSIRAILTRHDQSQIDHINEPALLASMRGARRETIYRPIDLALED
                     LGHARRARLAFESKDGEQVVLDLETAGAPSPRGGGLTDPGGHSADSSLPLMLRGASTL
                     AGPRSRVRIDGVEYLLPVKARTEAFVGHEGYYTEDHAMGVVRAGEVRLRLLTSPDRPD
                     VGARWTFETGDGRLDYVVTARAANGELRIEKDDGSGESLIAHAVGDQLDVTRIHVPSD
                     PLGAGGVALSFGPAGRFSLSMDQAPDLVTGHTEATPSAEGVILNLRPAQPAWAAGRRV
                     DVSCSRKGDKLSFITTIGAG"
     gene            2276..2896
                     /locus_tag="VHN39_05540"
     CDS             2276..2896
                     /locus_tag="VHN39_05540"
                     /inference="COORDINATES: protein motif:HMM:NF025605.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2815832.1"
                     /translation="MSTQSSEIVADPRDEEILRAAFDIFTAKGFHGATMLDVAKAARA
                     SKTTLYARFENKQALFSALVAWGTRQGAAALEAIADDETLDPAVALERFAARLLSQMM
                     QPEKVALLRIAVAEGGRMPAVGAILGGYTREHGLRLGRVLVSRLVARGIVAIADPEEF
                     GHAFIGLLQGELITHALLGETATPTVDEIEAHARRAMRRLIRAFAP"
     gene            complement(2893..3207)
                     /locus_tag="VHN39_05545"
     CDS             complement(2893..3207)
                     /locus_tag="VHN39_05545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815833.1"
                     /translation="MRKILSTLTLAGLVAAGGLTLANAAQDPPTPAGGAPVDPALALI
                     QTRCVMCHGADFVLQARKPAAAWRDLVNEMVGKGAQVSDSEADQIQAYLEKNQSVPPA
                     AP"
     gene            complement(3332..>4030)
                     /locus_tag="VHN39_05550"
     CDS             complement(3332..>4030)
                     /locus_tag="VHN39_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2815834.1"
                     /translation="QQPRPGLNDRLVAAVASGRPVVRPESDLRNPDAGEALDLIILSG
                     NWLGGGLTTEQVSEAQILLALLFVQMHVGYRLNRILCETTGEAQHRQMESSGGVWRRV
                     ERFGGERTLFVMAREEAFSVIGSLATRLFQYKPPVLHLRDTDKHLLAEALHGGTDAEL
                     AARINLSPSSIKKRWRLLFERIADVRPDLLPHGRNKGLNESRGPQKRHHILAYIRSHP
                     EELRPFRWRYSREV"
BASE COUNT          665 a         1312 c         1428 g          625 t
ORIGIN      
        1 ggcgccggac gaacttcgga atcgataggg acactaggaa gtctttgttt ctagtgtgct
       61 tcttggactt gaagttcgct cggtgcttgg ccctgaatga ggcgaacttc aagtccagca
      121 cactagcgtg tgggcgcggc gcggcaaggg ccacaaggcg aggcggcgac aggacaacaa
      181 tcccaagcgc gtgcggcccg caacgcgcct gtttgaagcg tcagccgtcc ggcccgctcg
      241 agaggtcgcc cttggcgctg atccaggtca ccaggtccca ggcgtttcgg atggcgatca
      301 gcagcatcgc cacgacgctg gcggcgatgc cgcgggccgc ccagttcggc gcgaaccaga
      361 tggcggcggc tgacaccgcg agggccaagc tggcggcgaa gggagctgcg ccatagcccc
      421 aggtgtcgga ccagtgggtc gagcggatcg aaccggtcac aagcatggcg agggcccgcc
      481 cggtgaagat cagacaggcc gttgcgccgg ctccgtagag cacgccggcc accgagttcg
      541 aaagcccagg cgccgtcgcc agcgcgctca gcatcagcac gcccgccaga tgagcgaccg
      601 tgggcgtcat gtagacgctg gcgccacgca gcttcagccc ggtgtcgccg ccgcggatca
      661 gggtcacgac gatgaacaac aggccgatca gcccgccggc cgcgccgccg atcagcagga
      721 agaagctgtc ccaatgctcg aacatggggc gaacttagcc gcgaggcggg cgggtgtgca
      781 aaggcggtgt gcgaagggcg cgcgacaggg tcaacggccc gttcatccta ttactgaaca
      841 ggaggttaag gctgaggccg gtatgtgtgg acggatcgcg gagaccacag accccatggc
      901 cgagttccag gtgaacacca tcagcgcgcc gccgccggtc agccacgtgc agcagatcca
      961 gtcgccgaag ccgccgaagg tccagtcgga ccacaaaccg gcaaacccgg tgacctcctc
     1021 gcgcggcccg gccgtggtgc tgagcggggc gctggccaag agcgtggaaa agaacggcca
     1081 gcaggcccgc gccgagccgc cgcccccgac cgggcagcat atcaatcacg tgatctgacg
     1141 ccggcgcgcc tcaacccgcg ccgatggtgg tgatgaagct gagcttgtcg cccttgcgcg
     1201 aacagctgac atccacccgc cgccccgccg cccaggccgg ttgagcgggc cgcaggttca
     1261 ggatcacgcc ctcggctgac ggcgtggctt cggtgtggcc ggtgacgaga tccggcgcct
     1321 ggtccatgga caggctgaac cggcccgccg gaccgaagct cagggccacg ccgccggcgc
     1381 caagggggtc ggacggcaca tggatccgcg tcacatccag ttggtcgccg acggcgtggg
     1441 cgatgaggct ttcgccggac ccatcatcct tttcgatgcg cagttcgccg ttcgccgcgc
     1501 gggccgtgac cacatagtcc aggcggccat cgccggtctc gaacgtccag cgggcgccga
     1561 cgtcgggtcg gtcgggcgag gtcagcagcc gcagcctgac ctcgccggcg cgaacgacgc
     1621 ccatggcgtg gtcttcagtg tagtagccct cgtggccgac gaaggcctcg gtgcgcgcct
     1681 tcaccggcag gaggtattcg acgccgtcga tgcggacgcg gctgcggggg cccgcgagcg
     1741 tgctggcgcc gcgcagcatc aggggcaggc tgctgtcggc ggagtgtccg ccgggatcgg
     1801 tcaggccgcc gcctctgggg ctcggcgcgc cagcggtctc caggtcgaga accacctgct
     1861 cgccgtcctt cgattcgaag gccagccggg cgcggcgcgc gtggccgagg tcctccagcg
     1921 ccaggtcgat gggccggtag atcgtctcgc gccgggcgcc gcgcatgctg gccagcaagg
     1981 ccggttcgtt gatgtggtcg atctgcgact ggtcgtggcg ggtgaggatc gcgcggatcg
     2041 accaggcgcc ggccggcctg cgctggatca tggcctcgac ggcctcatac gccgggtggc
     2101 cctcgaagaa gccgatgatg tgcaggtcgt cgtggcgatg cagcaggaag aacggctgga
     2161 ccacgccgcg cggcagcagc aggccgcggg tcgcggtcat cggatcgtcg gtcatcggga
     2221 cctcatcggg acatcggact ttgagtacca tccggtactg tggcatagag taccgatgag
     2281 tactcagtca agcgagattg tggccgaccc gcgggatgag gagattctgc gcgccgcctt
     2341 cgacatcttc acggcgaagg ggtttcacgg ggcgaccatg ctggacgtgg ccaaggccgc
     2401 gcgggcctcg aagaccacgc tctatgcgcg gttcgagaac aagcaggcgc tgttctcagc
     2461 cctggtcgcc tgggggacgc ggcagggggc cgcggcgctg gaagccatcg ccgacgacga
     2521 gaccctggat cccgcggtgg cgctggagcg gttcgcggcg cggctgcttt cgcagatgat
     2581 gcagccggaa aaggtggcgc tgttgcggat cgcggtggcc gagggcggcc gtatgccggc
     2641 ggtgggcgcg atcctgggcg gctacacccg cgagcatggc ctcaggctcg gccgcgtgct
     2701 ggtaagccgg ctcgtggcgc ggggcatcgt cgcaatcgcc gatccggaag agttcggcca
     2761 cgccttcatc ggcctgctac agggggagct catcacccac gccctgctgg gcgaaaccgc
     2821 gacgcccacg gtcgatgaga tcgaggccca tgcgcggcgc gccatgcgcc ggctgatccg
     2881 ggcgttcgcg ccttaaggcg cggccggcgg gacggactgg ttcttttcga ggtaggcctg
     2941 gatctggtcg gcctcgctgt cgctcacctg ggcgcccttg ccgaccatct cgttgacgag
     3001 atcgcgccag gccgccgctg gcttgcgcgc ctgcaggacg aagtcggcgc cgtggcacat
     3061 gacacagcgg gtctggatga gggcgagggc cggatcgacc ggcgcgccgc ccgccggcgt
     3121 tggcgggtcc tgcgccgcgt tcgccagggt gaggccgccg gccgcgacaa ggccggcgag
     3181 ggtgagggtg gagagaatct tccgcatgcc cgtcagaata gcgccaatgc cttggggctt
     3241 gccacgccgt cgccggcggc gtgttggcag tcaggaggtc gatgcccgga tagtccgcgc
     3301 atcgcgtagc tcagctgacg cttccgagag atcagacctc ccttgagtag cgccacctga
     3361 aggggcgcaa ttcctccgga tgagaccgga tataggccag aatgtgatgt cgcttctgcg
     3421 gcccgcgaga ctcgttcaag cctttgttgc gcccatgcgg cagcagatcc gggcgaacat
     3481 ccgcaatgcg ttcgaacagc agccgccagc gcttctttat cgacgatggc gatagattga
     3541 tcctggccgc caactcggca tccgtccccc catgaagcgc ctcagcgagc aggtgtttgt
     3601 cggtgtcgcg gaggtggagg accggcggct tgtactggaa caggcgggtc gcaagagatc
     3661 caattaccga aaacgcctcc tcccgcgcca tgacaaacag cgtccgttca ccgccaaatc
     3721 tttccaccct gcgccagacc ccgccgctgg attccatctg tctgtgttgg gcttcgcccg
     3781 tcgtctcgca gagtatccgg ttgagccggt agccgacgtg catctgcacg aagaggagcg
     3841 ccagcagtat ctgggcttcg gaaacctgtt ctgtagtaag gcccccaccc agccagtttc
     3901 cgctgaggat aatcagatcc agagcctcgc cggcgtcggg attgcgcagg tcggattccg
     3961 gtcgcaccac gggccttcca gatgcgacgg cggcgacgag ccggtcattg aggcccggcc
     4021 gcggctgctg
//
LOCUS       DATAJL010000287         5206 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_30718,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000287 DATAJL010000000
VERSION     DATAJL010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5206
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30718"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VHN39_05555"
     CDS             <1..240
                     /locus_tag="VHN39_05555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase A"
                     /protein_id="HEX2815835.1"
                     /translation="VLSEFDIAMMPRLRMKEGIPVKTDGGNLIYDAACGAIAEPAALA
                     AALKSLTGVVEHGLFLDLAELALIGTANGVTTLEP"
     gene            259..1641
                     /gene="gor"
                     /locus_tag="VHN39_05560"
     CDS             259..1641
                     /gene="gor"
                     /locus_tag="VHN39_05560"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004362 - glutathione-disulfide reductase
                     (NADP) activity [Evidence IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HEX2815836.1"
                     /translation="MAKYDYDLFVIGAGSGGVRAARLAAMSGAKVAIAEEDRVGGTCV
                     IRGCVPKKFMVYASEFAHHFKTSKGYGWTVGNAAFDWPHFLEEKDKEIARLSGIYVRN
                     LQNAGVDLAHGKARIVDAHTLEIDKVGTKTADKILISSGGRPWWPKDLPGCDLAITSN
                     QAFHLPELPKRIVIAGGGYIAVEFAGIFNGLGVETTLVHRGPNVLRGFDDDIRSHVTE
                     EMEKRGITVVLGTQHTAIEKTAKGLLSRFADGHERESDVVMFAIGREPYVEGLGLEKA
                     GVKLTDKGAVAVDDFSRTNVPNIWAVGDVTDRINLTPVAIREAAAFVATVFDKTPTAF
                     DHEMVPTAVFSQPPIGSVGLSEADARKQQGKVDIYLARLKPMKYALTDSEERALLKLV
                     VDCATDKVVGCHVVGPDAPEIIQMAAIAMKMGVTKAQWDATCAVHPTLSEELVTMREK
                     YVPLGLGQVA"
     gene            1638..2837
                     /locus_tag="VHN39_05565"
     CDS             1638..2837
                     /locus_tag="VHN39_05565"
                     /inference="COORDINATES: protein motif:HMM:NF016800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HEX2815837.1"
                     /translation="MSASLAAEPATDRLGVWCGWVLVGAAVMVPAFGFLWPIQFSGLV
                     ALVGLLCLPAVRISDADRPAAIILFAALIWAAVSTTWSPYHPGKPAHNTVLKLAFELP
                     LYWSAISAARRADPRLRARALEVLAWGCAVFGLVLLEEAVTRAAIYKALHVFYEPIRP
                     DLAESNVGHSTFVLGLIWPLAAYGGPARLRPWLALAMVVGTGAAAKVFEADAPVIGLM
                     LAPLTALAVWRWPVVAPKVLAGFAAAIFLLMPAAVWAVRHTFDYAALENRLPKTDSLR
                     MDYWSHAIDWIGIHPVRGWGLEASRMFGPGIILHPHNVPLQIWLELGGIGAIAAAAFW
                     GVVLIRLSRPAPSLAAAATAASAAVYLLFGVNFGVWQEWWLALGVLIAMLGAMSADIA
                     APGPSGP"
     gene            2922..4310
                     /locus_tag="VHN39_05570"
     CDS             2922..4310
                     /locus_tag="VHN39_05570"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEX2815838.1"
                     /translation="MTEQWTPASWRSKTAKHMPGDYPDLAALTKVEQTLRGMPPLVFA
                     GEARRLKSLLGDVSEGRAFLLQGGDCAESFKEFHADNIRDTFRLILQMAVVLTFAGGK
                     PVVKVGRMAGQFAKPRSAPTETIDGVTLPSYRGDIINGMEFTPEARTPDPQRLIQAYS
                     QSASTLNLLRAFATGGYADLHNIHRWTLGFVADSPQGARYREVAEKISETLMFMEAIG
                     VTPESQPALHQVEFFTSHEALLLNLEEAMTRIDSTSGQWYDTSAHLVWIGERTRDLDG
                     AHVEFFKGIKNPIGVKCGPTMEPADLMRLADALSPANEPGRLTLYGRFGFDKIEKRLP
                     ALLRATKAAGKSVVWAIDPMHGNTLTANNGYKTRPFDRILSEVKSFVEICKAEGVHPG
                     GVHLEMTGQNVTECTGGARQVTEGDLGDRYHTHCDPRLNGEQALELAFLVAEKLKDGR
                     VDAARAAAGGTN"
     gene            4379..4987
                     /locus_tag="VHN39_05575"
     CDS             4379..4987
                     /locus_tag="VHN39_05575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDSL-type esterase/lipase family protein"
                     /protein_id="HEX2815839.1"
                     /translation="MTRYPRRTLILTLLAALAAAPAVHAQTPPVVTLFGDSIAAGYGL
                     SPADGLANQLQAALAALGIQAVVRNAGVPGDSSPRGLARLNGSVRKDTTLCIVEFGGN
                     DRRLGYPEALTRDSLTAIVKQLKARGVTVVLAGLGAGQRGDLYRQIAEANHLALYPDL
                     FAGVGPDLRQPDGVHPNPAGAKVIARGLAAVVADALRARESS"
BASE COUNT          826 a         1884 c         1721 g          775 t
ORIGIN      
        1 gtgctgagcg agttcgacat cgccatgatg ccgcgcctgc ggatgaagga gggcatccct
       61 gtgaaaaccg acggcggcaa cctcatctat gacgcagcct gcggcgcgat tgcggagccg
      121 gcggcgctgg cggcggcgct gaagagcctg accggcgtcg tcgagcacgg cctcttcctc
      181 gacctggccg agctggcgtt gatcggcacg gcgaacggcg tcaccacgct cgagccctaa
      241 gaaccaagga ggccgcgcgt ggccaaatac gactacgacc tcttcgtgat cggcgccggc
      301 tcgggcgggg tgcgcgcggc gcgtctggcg gccatgtccg gcgccaaggt ggccatcgcc
      361 gaggaagacc gggtgggcgg cacctgcgtg atccgcggct gcgtgcccaa gaagttcatg
      421 gtctacgcct cggaattcgc tcaccatttc aagacgtcga aaggctacgg ctggacggtc
      481 gggaacgccg cgttcgactg gccccacttc cttgaggaga aagacaagga gatcgcacgc
      541 ctctccggca tttatgtccg caacctgcag aacgccggcg tcgatctggc ccacggcaag
      601 gcccgcatcg tcgacgccca caccctcgag atcgacaagg tggggacgaa gaccgccgac
      661 aagatcctga tctccagcgg cggccggccc tggtggccga aggacctgcc cggctgcgac
      721 ctggcgatca cctccaacca agctttccat ctgcccgaac tgcccaagcg catcgttatc
      781 gccggcggcg gctatatcgc ggttgagttc gccggcatct tcaacggtct gggcgtggag
      841 accacgctcg tccaccgcgg cccgaacgtc ctgcgcggtt tcgacgacga cattcgcagc
      901 catgtgaccg aggaaatgga aaagcgcggg atcacggtgg tcctgggaac ccagcacacg
      961 gccatcgaga agaccgccaa gggcctcctc agccgcttcg ccgacggcca cgagcgcgag
     1021 agcgatgtgg tgatgttcgc catcggccgc gagccctatg tggagggcct tggcctggaa
     1081 aaggccggcg tgaagctgac cgacaagggc gcggtggcgg tggacgactt ctcccgcacc
     1141 aacgttccga acatctgggc ggtgggcgac gtcaccgacc gcatcaacct gacgccggtg
     1201 gcgatccgcg aggcggccgc tttcgtcgcc accgtgttcg acaagacccc caccgccttc
     1261 gaccacgaga tggtgccgac cgccgtcttc tcccagccgc ccatcggctc ggtgggcctc
     1321 tccgaagccg acgcgcgcaa acagcagggc aaggtcgaca tctacctcgc ccgcctgaag
     1381 ccgatgaaat acgccctcac cgacagcgaa gagcgcgccc tgctcaagct ggtagtggac
     1441 tgcgccaccg ataaggtcgt cggctgccac gtggtcggcc ccgacgcacc ggagatcatc
     1501 cagatggccg ccatcgccat gaagatgggc gtcaccaagg cccagtggga cgcgacctgc
     1561 gccgtccacc cgactctctc cgaagagctg gtgaccatgc gcgagaagta cgtgccgctg
     1621 ggcctgggcc aggtggcatg agcgcaagcc tcgccgccga gccggcgaca gaccgcctgg
     1681 gcgtctggtg cggctgggtg ctggtcggcg cggcggtgat ggtgcctgcg ttcggcttcc
     1741 tctggccgat ccagttctcc ggcctcgtcg ccctggtagg cctgctctgc ctgccggctg
     1801 tgcggatcag cgacgcggac cggccggcgg cgatcatcct gttcgcggcc ctgatctggg
     1861 cggcggtctc caccacctgg agtccctacc acccgggcaa gcccgcccat aacaccgtcc
     1921 tcaagctggc cttcgagctg ccgctctact ggagcgcgat ctcggccgcg cgccgggccg
     1981 atccaaggct gcgcgcgcgg gccctagagg tcctggcctg gggctgcgcg gttttcggcc
     2041 tggtgctgct ggaggaggcc gtgacccggg ccgcgatcta caaggccctg cacgtcttct
     2101 acgagccgat ccgcccggac ctggcggaat ccaacgtcgg ccattccacc ttcgtgctcg
     2161 gcctcatctg gccgctggcg gcctatggcg gcccggcgcg gctgcggccc tggctggcgc
     2221 tggcgatggt cgtgggcacc ggggccgcgg cgaaggtctt cgaggccgac gccccggtga
     2281 tcggcctgat gctggcgccg ctgaccgcgc tcgccgtctg gcgctggccg gtcgtcgcgc
     2341 cgaaggttct ggccggcttc gcggccgcga tcttcctgtt gatgccggcg gcggtctggg
     2401 ccgtgcggca caccttcgat tacgccgccc tcgagaaccg tctgccgaag accgatagcc
     2461 tgcgcatgga ctactggagc cacgccatcg actggatcgg tatccatccc gtgcgcggtt
     2521 ggggtctgga ggccagccgg atgttcggtc ccggcatcat cctgcacccc cacaacgtcc
     2581 cactgcagat ctggctggag ctgggcggta tcggtgcgat cgcggcggcc gccttctggg
     2641 gcgtcgtcct catccggctg tcgcggccgg cgcccagcct ggccgccgcc gccacggccg
     2701 ccagcgccgc ggtctacctg ctgttcggcg tcaacttcgg ggtgtggcag gagtggtggc
     2761 tggcgctggg cgtgctgatc gccatgctgg gcgcgatgag cgcggacatt gccgcgccgg
     2821 gccccagcgg cccgtaagca tcgacctcgc cgggtgttct ggagtagaag gcccgctttg
     2881 cggcggcgct tgcccgtggc gggcgcctgg agttggagcc aatgacggaa cagtggacgc
     2941 cggcgtcctg gcgctcgaag accgccaagc acatgccggg cgactatccg gatctggccg
     3001 ccctcaccaa ggtcgaacag accctgcgcg gcatgccgcc gctggtgttc gccggcgaag
     3061 cgcgccggct gaagagcctg ctcggcgacg tctcggaagg ccgcgccttc ctgctacagg
     3121 gcggcgactg cgccgagagc ttcaaggaat tccacgccga caacatccgc gacaccttcc
     3181 gcctgatcct gcagatggcc gtcgtcctga ccttcgccgg cggcaagccg gtcgtgaagg
     3241 tgggccgcat ggccggccag ttcgccaagc cgcgctcggc ccccaccgag accatcgacg
     3301 gcgtcaccct gccgtcctac cgcggcgaca tcatcaacgg catggagttc acgcccgagg
     3361 cccgcacgcc ggacccgcaa cggctgatcc aggcctacag ccagtccgcc tcgacgctca
     3421 acctgctccg cgccttcgcc accggcggct acgccgacct gcacaacatc caccgctgga
     3481 ccctgggctt cgtggccgac agcccgcagg gcgcccgcta ccgcgaggtc gccgagaaga
     3541 tcagcgagac cctgatgttc atggaggcga tcggcgtcac gccggagagc cagccggcgc
     3601 ttcaccaggt ggaattcttc accagccacg aggccttgct gctcaactta gaagaggcga
     3661 tgacccggat cgatagcacc tcgggccaat ggtacgacac ctccgcccac ctggtctgga
     3721 tcggcgagcg cacccgcgac ctcgacggcg cccacgtcga gttcttcaag ggcatcaaga
     3781 acccgatcgg cgtgaagtgc ggcccgacca tggagccggc cgacctcatg cgcctggccg
     3841 acgcgctcag ccccgccaac gaaccgggcc ggctgacgct ctacggccgc ttcggcttcg
     3901 acaagataga gaaacgcctg ccggcactgc tgcgcgccac caaggccgcc ggcaagtcgg
     3961 tggtctgggc catcgacccg atgcacggca acacgctcac cgccaacaac ggctacaaga
     4021 cccgcccctt cgaccgcatc ctgtctgagg tcaaaagctt cgtggagatc tgcaaggccg
     4081 agggcgtcca tcccggcggc gtccacctgg agatgaccgg ccagaacgtc accgaatgca
     4141 ccggcggcgc ccgccaggtc accgagggcg acctcggcga ccgctaccac acccactgcg
     4201 accccaggct caacggcgaa caggcgctgg aattggcgtt tctcgtggcg gagaagctga
     4261 aggacggccg ggtggacgct gcgcgcgcgg cggcgggcgg aaccaactaa tcccgctcat
     4321 tcccgcgaaa gcggggaccc aggctttttc gttgtcgagg gccgcttgag gggacgagat
     4381 gacccgctat ccccgccgaa ccctgatcct gaccctcctg gcggccctgg ccgccgcgcc
     4441 ggccgtgcat gcccagacgc cgcccgtcgt caccttgttc ggggactcca tcgccgccgg
     4501 ctatggcctc agccccgccg acgggctcgc gaaccagctt caggccgcgc tcgccgccct
     4561 cggaatccag gccgttgtcc gcaacgccgg cgtcccgggc gactcatcgc cccggggcct
     4621 cgcccgcctc aacggctcgg tccgcaagga caccaccctc tgcatagtgg agttcggcgg
     4681 caacgaccgg cgcctgggct acccggaggc gctcacccgc gacagcctca ccgccatcgt
     4741 caaacagctg aaggcccgcg gagtcacggt cgtgctggca ggcctgggcg cgggccagcg
     4801 gggcgacctc tatcgccaga tcgccgaagc caatcacctg gccctctacc ccgatctctt
     4861 cgccggcgtc ggcccggacc tgcgccagcc cgacggcgtg caccccaacc ccgccggcgc
     4921 gaaggtcatc gcccggggct tggcggcagt ggtcgcagac gcgctgcggg cgcgcgagtc
     4981 tagctagggg gctcgccggt catgctgaac accgacttca cccagggacc cgagccggag
     5041 accatcttca tggtgggcgc gggcaagtgg tcggacggga cgccctttgt gcacggtgag
     5101 gcgcacagcc actgaggccg cggccggcga gccccctagc cagactcgcg cgcccgcagc
     5161 gcgtctgcga ccactgccgc caagccccgg gcgatgacct tcgcgc
//
LOCUS       DATAJL010000288         4293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17851,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000288 DATAJL010000000
VERSION     DATAJL010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4293
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17851"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..197)
                     /locus_tag="VHN39_05580"
     CDS             complement(<1..197)
                     /locus_tag="VHN39_05580"
                     /inference="COORDINATES: protein motif:HMM:NF014038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEX2815840.1"
                     /translation="MLADREIELKFACGPDDLAAVLAAAPAGDDETRELISVYFDTPD
                     LVLQKAGASLRVREHKGRRIQT"
     gene            505..1431
                     /locus_tag="VHN39_05585"
     CDS             505..1431
                     /locus_tag="VHN39_05585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2815841.1"
                     /translation="MQPIISVEGLSKTYAGGFQALKGVNLTIEKGEIFALLGPNGAGK
                     TTLIGITCGIVNPTAGRVLADGHDVVKDYRSARHKIGLVPQELSTDAFETVWATVNFS
                     RGLFGKPTNHAYVEKVLRDLSLWDKKDAKIMALSGGMKRRVMIAKALSHEPQILFLDE
                     PTAGVDVELRRDMWEMVRGLRENGVTIILTTHYIEEAEEMADRIGVISKGELILVEDK
                     AELMRKLGKKQLTLHLQEPLKAAPAGLPQYDLTLANDGADLIYSFDAQAENTGIAELL
                     RELSKRGVDFKDLKTEQSSLEEIFVSLVSTRK"
     gene            1441..2217
                     /locus_tag="VHN39_05590"
     CDS             1441..2217
                     /locus_tag="VHN39_05590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018082224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2815842.1"
                     /translation="MAGFSLNPYAIRAIYRFEMARTFRTVVQSIAAPVISTSLYFIVF
                     GAAIGSRMAKIDGITYGAFIVPGLIMLSILTESISNGSFGIYMPKWSGTIYEMLSAPV
                     SAVEVLLGYVGAAASKSVMLGAIILITARLFVPFHIAHPVWALAFLGLTSLTFSLFGF
                     ILGIWADGFEKLQIVPLMVITPLTFLGGSFYSINMLPGIWAKVALFNPVVYLVSGFRW
                     SFYGVSDVGVGLSLAMTLAFMLACLAVVWWIFKTGWRLKT"
     gene            2643..3008
                     /locus_tag="VHN39_05595"
     CDS             2643..3008
                     /locus_tag="VHN39_05595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HEX2815843.1"
                     /translation="MEANHEVRDFARFLRRRLTLPEGLLWRAIKGGKADGLKFRKQHP
                     IGPYALDFYCHEVRLCVEVDGASHGFGNRPQLDARRDAWLAAKGIRTLRISASLVLDE
                     VDDAVRMIVGVARGGGGTF"
     gene            complement(3064..3342)
                     /locus_tag="VHN39_05600"
     CDS             complement(3064..3342)
                     /locus_tag="VHN39_05600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HEX2815844.1"
                     /translation="MSEAATRTVEIINKRGLHARASAKFVKTASGYDAEVRVSKDGQT
                     VDARSIMGLMMLAAGPGCCIEIEAEGAEAEAVVAALEQLVTAKFDEDE"
     gene            complement(3350..3754)
                     /locus_tag="VHN39_05605"
     CDS             complement(3350..3754)
                     /locus_tag="VHN39_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:1902495 - transmembrane transporter
                     complex [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0009401 - phosphoenolpyruvate-dependent
                     sugar phosphotransferase system [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEX2815845.1"
                     /translation="MIGLVIVTHGRLAEEFVFAMEHVVGPQAAVEAICIGPEDDMERR
                     RKDILAACGRVDTGAGVILLTDMFGGTPSNLAISVMEQTKAEVIAGLNLPMLIKLASV
                     RARQSLEEAVACAQEAGRKYISVASYVLAGEK"
     gene            complement(3836..>4293)
                     /locus_tag="VHN39_05610"
     CDS             complement(3836..>4293)
                     /locus_tag="VHN39_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004624062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEX2815846.1"
                     /translation="GDLSEGDLIRHAGLIAIRVGGYWRGVLIEGPPGAGKSDLALRAL
                     EQGFSLVADDRVLLWTSAGRLFGRAPDTLYGLLEVRGLQVIGVPALPLAEVGLVARCG
                     AAERIPEPRFAEIAGVSLPLMEIDPREAAAPAKLRRALDHFDAAHKRRI"
BASE COUNT          722 a         1411 c         1397 g          763 t
ORIGIN      
        1 gtctggatgc gtcggccctt gtgttcgcgc acacgcaagg aagccccggc cttttgcagg
       61 accaggtcag gagtgtcgaa atagacgctg atcagttcgc gggtctcgtc gtcgccggcc
      121 ggcgccgcgg ccagcacggc ggccaggtcg tccggcccgc aggcgaactt cagttcgatc
      181 tcacgatccg cgagcatgga ggctctctcc cgtcgtcggc gtctccatag catcggcgtc
      241 cgcagcccgt cttgcgctcg atcaattccg catggccggc cggccacggt ctagtgtccc
      301 gcttccgaag ttcgcaagcg tttgcggcag gcgccggacg aacttcggat gcgatgagga
      361 cactaggaag gctaggtctt tctagtgtgc ctctttggat ttgaagttcg cccggcgctt
      421 ggccctgaat gctgcgaact tcaaatccgg cacactagcc gaagcgtcct tggggtctta
      481 tctccgtgat ccgggggaca gcgtttgcag ccgatcattt ccgtagaagg tctttcgaag
      541 acctacgccg gcgggttcca ggccctgaag ggcgtcaatc tgaccatcga gaagggcgag
      601 atcttcgccc tcctgggccc caatggcgcg ggcaagacca cgctgatcgg catcacttgc
      661 ggcatcgtca atccgaccgc cggccgggtg ctcgccgacg gccacgacgt ggtcaaggac
      721 taccgctccg cgcgccacaa gatcgggctt gtgccgcagg agctgtccac cgacgccttc
      781 gagacggtct gggcgacggt caatttcagc cgcggcctgt tcggcaagcc caccaaccac
      841 gcctatgtgg aaaaggtgct gcgcgacctt agtctatggg acaagaagga cgccaagatc
      901 atggcgctgt ccgggggcat gaaacgccgg gtgatgatcg ccaaggcgct ttcccacgag
      961 ccgcagatcc tgttcctgga cgagcccacc gccggcgtcg atgtcgaact gcgccgtgac
     1021 atgtgggaga tggtccgggg cctgcgagag aacggcgtca ccatcatcct gaccacccac
     1081 tacatcgaag aggccgagga gatggccgac cgcatcgggg tgatctccaa gggcgagttg
     1141 atcctggtcg aggacaaggc cgagctgatg cgcaagctcg gcaagaagca gctgacgctg
     1201 catttgcagg agcccctgaa ggcggcgccc gcgggcctgc cgcagtacga cctgacgctg
     1261 gccaacgacg gggcagacct gatctacagc ttcgacgccc aggccgagaa cactggcatc
     1321 gccgaactcc tgcgcgagct ttccaagcgc ggcgtcgact tcaaggacct gaaaaccgag
     1381 cagagctcgc tggaggagat cttcgtcagc ctggtgagca cgagaaagta ggactctggg
     1441 atggccggct tttccctcaa cccctatgcg atccgcgcca tctatcgctt cgagatggcc
     1501 cggaccttcc gcacggtcgt gcagtcgatc gccgccccgg tgatctccac ctcgctctat
     1561 ttcatcgtct tcggcgcggc gatcggctcg cggatggcga agatcgacgg gatcacctac
     1621 ggcgccttca tcgtgccggg cctgatcatg ctgtcgatcc tgaccgagag catctccaac
     1681 ggctcgttcg gcatctacat gcccaagtgg tcggggacga tctacgagat gctgtcggcg
     1741 ccggtttcgg ccgtcgaggt gctgctgggc tatgtgggcg cggcggcctc caagtcggtg
     1801 atgctggggg cgatcatcct gatcaccgcc aggctgttcg tgccgttcca catcgcccac
     1861 ccggtctggg cgctggcctt cctgggactg acctcgctga ccttttccct gttcggcttc
     1921 atccttggca tctgggccga cggcttcgag aagctgcaga tcgtgcccct gatggtgatc
     1981 accccgctga ccttcctggg cggcagcttc tattcgatca acatgctgcc ggggatctgg
     2041 gccaaggtcg cgctcttcaa cccggtggtc tatctggtct cgggcttccg ctggagtttc
     2101 tacggtgtct ccgacgtggg cgtggggctg agcctggcca tgaccctggc gttcatgctg
     2161 gcctgcctgg ccgtcgtctg gtggattttc aagaccggct ggcggctgaa gacgtaacgc
     2221 tagttccgcc cccgcagggg gaggtgtcgc cgaaggcgac ggagggggct tccactcaaa
     2281 aggcgaagct agctgacggc catgacggca aggccgatgg catcagcggg gcgcttctgt
     2341 ctttgggggc ctttaggcat cggtcgccct tccgagcaca agcgcctgca caatcagaat
     2401 agcgccgatc agaataccga ggccgccgat gccgaagaca gagtgggtaa cccatacgcg
     2461 tagcgcaccc actgcgattg cgaaggctcc ggcgcgcaag aagggtgtct tgaaccgagg
     2521 attcatgccg ccatcatagc cccgacctgg cgcgggcgga atgcttgtca acggggacgg
     2581 atttcaaact gagacaccac ctgtcccttg aaagaacata tcaagaacgc tagcatccgc
     2641 ccatggaggc gaaccacgag gtccgcgact tcgcgcgttt tctgcgccgc cggctgaccc
     2701 tgccggaggg tctgctctgg cgcgccatca aaggtggcaa ggccgatggg ctgaagttcc
     2761 gcaagcagca tccgatcggg ccctacgcgc tcgatttcta ctgccacgaa gtgcggctct
     2821 gcgtggaggt cgacggggcc tcacatgggt ttggcaaccg gcctcagttg gacgcgcgcc
     2881 gggacgcctg gctcgccgcg aagggcattc gcaccctcag gatttcggcg tcattggtgt
     2941 tggacgaggt ggatgacgcc gtgcggatga tcgtcggtgt ggcgcggggt ggcggtggga
     3001 ccttttgagg ggaagccccc tccggccctc tgggccacct cccccttcgg ggggaggaac
     3061 tgcctactcg tcctcgtcga acttggcggt taccagctgt tcgagcgcgg ccacgacggc
     3121 ttcagcctcg gcgccttcgg cctcgatctc gatgcagcag ccggggccgg cggccagcat
     3181 catcaggccc atgatcgagc gcgcatcgac ggtctgaccg tccttggaga cgcggacctc
     3241 ggcgtcatag cccgaagcgg tcttgacgaa cttggccgat gcgcgggcgt ggaggccgcg
     3301 cttgttgatg atctcgacgg tgcgggtggc cgcctcgctc accagccgct cacttctcgc
     3361 cggccagaac ataggaggcc acggagatgt acttgcggcc ggcttcctgg gcgcaggcca
     3421 cggcctcctc caggctctgg cgggcgcgca cgctggcgag cttgatcagc atcggcaggt
     3481 tcaggccggc gatcacctcg gccttggtct gctccatgac ggagatggcg aggttggacg
     3541 gcgtgccgcc gaacatgtcg gtgagcagga tgacgccggc gccggtgtcc acgcgcccac
     3601 aggccgccag gatgtccttg cggcggcgct ccatgtcgtc ctcggggccg atgcagatgg
     3661 cctcgaccgc ggcttgcggg ccgaccacat gctccatggc gaagacgaac tcctccgcca
     3721 gccgcccgtg cgtcacgatc acgagcccga tcataccgcg agcccgcaaa tgcaaatgtc
     3781 ttccaagggt atccccaccc accgcggcct aaggaacccg tcccgcgaag ccgtgctaaa
     3841 tacgcctctt gtgcgccgcg tcaaagtggt cgagagcgcg tcttagtttc gcaggcgccg
     3901 cggcctcgcg cgggtcgatc tccataagcg gcagcgaaac cccggcgatt tcggcgaacc
     3961 gcggctccgg gatgcgctcg gcggcgccgc agcgggcgac cagccccacc tccgccagcg
     4021 gcagggccgg gaccccgatc acctgcagcc cgcggacttc cagcaggccg taaagcgtgt
     4081 ccggcgcccg gccgaacaac cgcccggccg aggtccacag gagcacgcgg tcgtcggcga
     4141 ccagggaaaa cccctgctcc aaagcccgga gcgccaggtc gctcttgccg gcgccgggcg
     4201 gcccctcgat caggacgccg cgccagtagc cgccgacgcg gatggcgatc aggccggcgt
     4261 ggcggatcag gtccccctcg ctcaggtccc cct
//
LOCUS       DATAJL010000289         1878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17854,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000289 DATAJL010000000
VERSION     DATAJL010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17854"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..317
                     /locus_tag="VHN39_05615"
     CDS             <1..317
                     /locus_tag="VHN39_05615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HEX2815847.1"
                     /translation="KRVCLAQCRSPAAFLAREWRPGWGGSIRVGVLHGLYCLGCCWLL
                     MALLFVGGVMNLAWVALLAVSVLAERVLPIGERAALAIGGLAITAGFATLLAPDLMRL
                     QT"
     gene            complement(386..1684)
                     /locus_tag="VHN39_05620"
     CDS             complement(386..1684)
                     /locus_tag="VHN39_05620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HEX2815848.1"
                     /translation="MSDPAPKSHPDVKQPERPPLLQVLGPGLITGASDDDPSGIATYS
                     QAGAQFGFGLSWVMLFSWPLMCAIQEISARIGRVTGRGIAGNLKKHYPNPVVYSIVTL
                     LVVANVINIGADLGAMGAGLKLLIGGNQLFYVAAFGLITVLLEVFSRYSRYVSVLKWL
                     TLSLFAYVGVAFVVKMPWGEVAKSLVIPQITFTPAYMTVVVALLGTTISPYLFFWQAE
                     EEVEEVKERTDAKPLERAPEQATAEFGRIRIDTYVGMAFSNAVALFIILTTAATLHAH
                     GITDIQTSSQAAEALRPIAGRFAFTVFAIGIIGTGLLALPVLAGSSAYALGETFGWHV
                     GLARKPYRAKAFYGAIAVATALGVLLNYSPIDPIKALFWSAVINGVVAVPVMVLMMHL
                     SSHKPAMGGFQIGRGLKIVGWLATAVMAAAAVGLFATWGK"
BASE COUNT          313 a          596 c          649 g          320 t
ORIGIN      
        1 tcaaacgcgt ctgtctcgcg cagtgccgct cgccggccgc cttcctggcg cgtgagtggc
       61 ggccgggttg gggcggctcc atccgcgtgg gcgtcctcca tggactctac tgcctgggct
      121 gctgctggct cctgatggcg ctcctttttg tcggcggcgt gatgaacctg gcctgggtcg
      181 ctcttctcgc cgtttcggta ctcgccgaga gggttctgcc gatcggcgag cgggcagcgc
      241 tggcaatcgg cggcctggcg atcacggcgg gcttcgcgac gttgctcgcc ccggatctga
      301 tgcgactcca aacctaacta gtacgtgtat gtttctattg tgattttttt ggattcgaag
      361 ttcggcgaac ccggcacgct cgcggctatt tcccccaggt cgcgaagagg cccaccgcgg
      421 cggcggccat gacggcggtg gcgagccagc cgacgatctt caagccgcgg ccgatctgga
      481 aaccgcccat cgccggcttg tggctggaga ggtgcatcat caggaccatc accggcacgg
      541 cgaccacgcc attgatcacc gcgctccaga acagcgcctt gatgggatct atcgggctgt
      601 agttgagcag cacgcccagc gccgtggcga cggcgatggc gccatagaac gccttggcgc
      661 gataaggttt gcgggccaga cccacatgcc agccgaaggt ctctcccagc gcgtaggccg
      721 acgagccggc cagcaccggc agggccagca gaccggtgcc gatgatgccg atggcgaaga
      781 ccgtgaaggc aaagcgtccg gcgatggggc gcagcgcctc ggcggcctgg gacgaggtct
      841 ggatgtcggt gatcccgtgg gcgtgcaggg tcgcggccgt ggtcaggatg atgaacaggg
      901 cgaccgcgtt ggagaacgcc atgccgacat aggtgtcgat gcggatgcgg ccgaactccg
      961 ccgtcgcctg ttcgggcgcg cgctccaggg gcttggcatc cgtgcgctcc ttgacctcct
     1021 cgacctcctc ctccgcctgc cagaagaaca ggtaagggct gatggttgtg ccgaggagag
     1081 ccacgaccac ggtcatgtag gccggcgtga aggtgatctg cgggatcacc aggctcttgg
     1141 cgacctcgcc ccacggcatc ttcacgacga aggccacgcc cacataggcg aagagggaga
     1201 gcgtcagcca cttcaggacc gagacgtagc gggaatagcg ggagaagacc tcaagcagca
     1261 cggtgatcag gccgaaggcg gccacgtaga agagctggtt cccgccgatc agcagcttca
     1321 ggcccgcgcc catggcgccc aggtccgcgc cgatgttgat gacgttggcg accaccagca
     1381 gggtgacgat cgaatagacc accgggttcg ggtagtgctt cttcagattt ccggcgatgc
     1441 cgcgcccggt gacccggccg atgcgcgcgc tgatctcctg gatggcgcac atcagcggcc
     1501 aggagaacag catgacccag gaaagaccga agccgaactg ggcgccggcc tgggaatagg
     1561 tggcgatgcc cgaggggtcg tcgtccgagg cgcctgtgat caggcccggg cccagcacct
     1621 gcagcagcgg cggccgctca ggctgcttga cgtccgggtg gctctttggc gcggggtcac
     1681 tcatggaagt tccatcccgt gaatttccga gcctaacgcc gtagccgcgc caaggctccg
     1741 cttatcccgc ggagcctgcc gcctatttga cggtgaaggc gaagtcgccg tcggtctcgt
     1801 ggccgtcctc ggtcttcatg tgccaggtga ccctgtaggc gccggcggcg agcgcgccgg
     1861 ggaaggcgac catgacga
//
LOCUS       DATAJL010000290         2938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17861,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000290 DATAJL010000000
VERSION     DATAJL010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17861"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            146..1096
                     /locus_tag="VHN39_05625"
     CDS             146..1096
                     /locus_tag="VHN39_05625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2815849.1"
                     /translation="MDLPDYAIEAKGLVKTYAATKTTPEMQALKGIDLAIPRGSIFGL
                     LGPNGAGKSTFINILAGLCRKTSGTVSIWGRDIDERPRDARAAIGVVPQEIAADPFFT
                     PRESLEVAAGMYAVPKAERRTMELLNALGLGDKANAYVRQLSGGMKRRLMVAKAMVHN
                     PPVLILDEPTAGVDVELRRQLWAYVLELNRKGVTIVLTTHYLEEAQELCDQIAIINRG
                     QVVACEPTTTLLARMDTRKVLVTPDEPMTAAPALKGFETHLLPSGGFSVGYRTGQSSV
                     EQVLGAIRAAGLHIKDISTEDPDLEDVFVSLTYAAPEPVA"
     gene            complement(1093..1623)
                     /locus_tag="VHN39_05630"
     CDS             complement(1093..1623)
                     /locus_tag="VHN39_05630"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2815850.1"
                     /translation="MVFPAGPSDAEELARVHVASWRETYRGLLADAFLARMSEPGFTR
                     RFRRALTNPGSSITLAAGDRYGLVGYAQGGPSRRDTASPANGGEAEIATLYVLRQAQG
                     QGLGERLMVETARALAANGATSLMISVLRDNIRARGFYEHLAGEPETARQEPGPGGRL
                     LYEVAYRWRDIRTLTG"
     gene            1751..>2938
                     /locus_tag="VHN39_05635"
     CDS             1751..>2938
                     /locus_tag="VHN39_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEX2815851.1"
                     /translation="MNAQAPTTLPDPSAGASPVMAQFFEAKTRQPDALVFFRMGDFYE
                     LFFEDAQKASAALGITLTARGQHGGAPIPMCGVPVHAAEAYLAKLIRAGFKVAVCEQM
                     ENPAEARKRGSKSVVHRVVVRVVTPGTLTEEGLLDARGANRLAAIAVRGGQAAVASVE
                     LSTGEVECLATSVAGLSSALAALGPSEILVPDRLFVDPAISEALKQAGGFVQPLPQAL
                     AEPAASEARLKRLYGVETLDGFGALSGAEISALGLIAAHLETTQGGKLPALSAPRRAG
                     EADVMAIDPATRTSLEIEKATSGSREGSLLAAIDRTVTAPGARLLAARLARPLLDPAA
                     IDARLDAVAWFCEHRPQRQKLREALKGLGDMARALSRLALGRGGPRDLGCLRDGLAIG
                     EAVT"
BASE COUNT          423 a         1064 c         1011 g          440 t
ORIGIN      
        1 ctttcgcctt cgccttggac gcggcggcct tgatcggagc tttgcgggcc atctggtcag
       61 tccttgttgg cggcccgatt gtggagtggc cgccgcgcgc ctaggtatgc gagcgcggct
      121 ttcgccgtca atcgactgga cgcttatgga ccttcctgac tacgcgatcg aggccaaggg
      181 cctggtcaag acctacgccg ccaccaagac gacgcccgaa atgcaggcgc tgaaggggat
      241 cgacctggcc attccgcggg gttcgatctt cggcttgctg ggccccaatg gcgccggcaa
      301 gtcgaccttc atcaacatcc tggcggggct atgccgcaag acctcgggca cggtctcgat
      361 ctggggccgc gacattgacg agcgcccgcg cgacgcccgc gccgccatcg gcgtggtgcc
      421 acaggagatc gccgccgacc cgttcttcac cccgcgcgag tcgctggagg tcgcggccgg
      481 catgtacgcc gtgcccaagg ccgagcggcg gaccatggag ctgctcaatg cgctgggcct
      541 cggcgacaag gccaacgcct atgtgcgcca gctctctggc ggcatgaaac gccggctgat
      601 ggtcgccaag gccatggtcc acaacccgcc ggtgctgatc cttgacgagc ccaccgccgg
      661 cgtcgacgtg gagctgcgcc gccagctctg ggcctatgtg ctggagctga accgcaaggg
      721 cgtgaccatc gtgctcacca cccactatct ggaggaagcc caggagctct gcgaccagat
      781 cgccatcatc aaccgcggcc aggtcgtggc ctgcgagccg accacgacgc tgctggcgcg
      841 catggacacg cgcaaggtgc tggtgacgcc ggatgagccg atgaccgcgg cgccggcgct
      901 caagggcttc gagacccacc tgctgccctc cggcggcttc tcggtgggct accgcaccgg
      961 tcagtcgagc gtggaacagg tgctgggcgc catccgcgcc gcgggtctgc acatcaagga
     1021 catctccacc gaggacccgg acctggagga cgtgttcgtg tcgctcacct atgcggcgcc
     1081 ggagccggtg gcctagcccg tcagcgtccg gatatcccgc caccggtagg ccacctcata
     1141 gagtagccgc ccgccggggc ccggctcctg gcgcgccgtc tccggctcgc ccgccagatg
     1201 ctcgtagaag ccccgcgccc ggatgttgtc gcgcagcacc gagatcatca gcgaggtcgc
     1261 gccattggcc gccagcgcgc gcgccgtttc gaccatcagc cgctcgccca gcccctggcc
     1321 ctgggcctgg cgcagcacat agagggtggc gatctccgcc tcgcccccgt ttgcaggact
     1381 ggccgtatcg cgccgcgacg ggccgccctg ggcgtagccc accagcccat agcggtcgcc
     1441 ggcggcgagc gtgatgcttg aaccgggatt ggtcagggcg cggcggaagc ggcgggtgaa
     1501 gccaggctcg ctcatccggg ccaggaaggc gtcggccagc agaccgcgat aggtctcgcg
     1561 ccaggaggct acgtggacgc gcgccagctc ctcggcgtcc gacggtccgg cggggaacac
     1621 cacgtaggtc aaggacgcgg gctcaagcta gaagctccac cacatgtgac atccatccac
     1681 agcttgggct tgttcgtccc gggttcaagg gctgacggga ctcactgcga cagatagcgt
     1741 cacgcggctc atgaacgccc aggctcccac aacactgccc gacccgtccg ccggcgcctc
     1801 gccggtgatg gcgcagtttt tcgaagccaa gacccgccag ccggacgcgc tggtgttctt
     1861 ccgcatgggc gatttctacg agctgttctt cgaggacgcc cagaaggcct cggccgcgct
     1921 cggcatcacc ctgaccgcac ggggccagca cggcggggcc ccgatcccca tgtgcggcgt
     1981 gccggtccat gccgccgaag cctatctggc caagctgatc cgcgccggct tcaaggtcgc
     2041 ggtctgcgag cagatggaga acccggccga ggcccgcaag cgcggctcca agtcggtggt
     2101 tcaccgcgtc gtggtccgcg tggtgacgcc gggcactctg accgaggagg gtttgctgga
     2161 cgcccggggg gcgaaccgcc tggccgcgat cgccgtgcgc ggcggccagg cggcggtcgc
     2221 cagcgtcgag ctctccaccg gcgaggtgga atgtctggcg accagcgtcg cgggcctgtc
     2281 atcggcgctg gcggcgctgg gcccttcgga aatcctggtt cccgaccggc tgttcgtcga
     2341 ccccgcgatc tccgaggccc tgaaacaggc gggcggcttc gtccagcccc tgccccaggc
     2401 gctggccgaa ccggccgctt ccgaggcccg gctgaagcgg ctctatggcg tggagaccct
     2461 cgatgggttc ggagcgctgt cgggggctga gatctcggct ctcggtctga tcgccgctca
     2521 cctggagacc acccagggcg gcaagctccc cgcgctctcc gccccgcgcc gggccggcga
     2581 agccgacgtc atggccatcg atccggccac ccgcaccagc ctggagatcg agaaggccac
     2641 ctccggatcg cgcgagggct cgcttctggc cgccatcgac cgcacggtga ccgcgcccgg
     2701 cgcgcgcttg ctggccgccc ggctggcgcg gccgctgctg gatcccgccg ccatcgacgc
     2761 gcggctcgac gccgtcgcct ggttctgcga gcaccgcccg cagcgtcaga agctccgcga
     2821 ggcgctgaag ggcctgggcg acatggcccg cgcgctctcc cgcctggcgc tgggccgcgg
     2881 cgggccgcgc gacctggggt gcctccgcga cggcctggcg atcggcgagg ccgtgacc
//
LOCUS       DATAJL010000291         7117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_4920,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000291 DATAJL010000000
VERSION     DATAJL010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7117
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4920"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..850)
                     /gene="lpxK"
                     /locus_tag="VHN39_05640"
     CDS             complement(<1..850)
                     /gene="lpxK"
                     /locus_tag="VHN39_05640"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEX2815852.1"
                     /translation="MKLSTPRWWYTREATSRGGGMARTRFLLTPVSWIWAAVTARRIA
                     RATPFDPGVPVICVGNLTMGGVGKTPVVRALAERLAARGKAVHLLSRGYGGRLEGPVR
                     VDPAVHTSADVGDEPLMLARDYPVWVAHDRADGAFAAASAGAQVIVMDDGHQNPSLKK
                     TLSLVVVDGETRGDDWPFGDGRVFPAGPMREPLAAGLSRADAVLVLLPAEVAETDPEL
                     IAMLKGPPLLTGHLNPANPPPSGPQVGFAGIGKPWKVERALQAAGCELADFAPFPDHA
                     AYEESTL"
     gene            complement(847..2130)
                     /locus_tag="VHN39_05645"
     CDS             complement(847..2130)
                     /locus_tag="VHN39_05645"
                     /EC_number="2.4.99.12"
                     /EC_number="2.4.99.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HEX2815853.1"
                     /translation="MSRAPRTLPLALYAAATGLFEPLAPELLRRRAIRGKEDASRLNE
                     RLGRSSLARPEGPLVWLHGVSVGESLSLLPLIAGLRTRRPDLNILVTSGTVTSAEVLA
                     KRLPKGVIHQFAPVDAPGAAARFLDHWRPGAALFVESELWPNLIVAARARGIRLALLS
                     ARMTEGSATGWGRAPATARALLRAFDLVLPQDTETEMRLSGLGADTGPQLNLKLVVEA
                     PPVDAELVAALKAGANGRGIVLAASTHPGEEALVAGAFRTAAASGPDALLIVAPRHPD
                     RGPQVAAELAAAGFQVARRAAGEPVTPATTAYVVDTLGELGAFYVAADAVVMGGGFAD
                     GVGGHNPLEAARLEAAIVSGPNVFNAREIYAEMLADAAVIEAADAAALARHLRGLLDN
                     PVIVRRIGEAASAYAGRQGAALDRALALVEPLLPA"
     gene            complement(2127..3140)
                     /locus_tag="VHN39_05650"
     CDS             complement(2127..3140)
                     /locus_tag="VHN39_05650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2815854.1"
                     /translation="MAHSHDHHDHDHEHGDEHGHDHGHAHAAHKHGHGHSHSHGGHHH
                     HVPADMGRAFAIGVTLNTVFVAVEVGAGFLSHSMALLADAGHNLSDVLALLMAWGATV
                     LAKRAPTSRRTYGLRKGTVLASLGNAVFLLLAIGGIVSESIHRLTLPNVVHTTTVMIT
                     AAIGVAINTATALLFMRGGKEDLNVRGAFLHMASDAVISVVVVIGAGVIALTGLQWID
                     PVLSLGIAVVIVAGTWGLLRDSVNLALDGAPREIDVAEVRAWLAALPGVEEIHDLHIW
                     AMSTTETALTAHVIRPANDDADQFLHTTCEALSVRFNIGHSTLQVETDSETACRLAPH
                     GVV"
     gene            complement(3171..3887)
                     /locus_tag="VHN39_05655"
     CDS             complement(3171..3887)
                     /locus_tag="VHN39_05655"
                     /inference="COORDINATES: protein motif:HMM:NF015961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX2815855.1"
                     /translation="MKKLLRSDAVQTLLGWLLGTYIRLILRTVRWRHENLDCVEPVLA
                     GEAGAVALFWHGRIPLCLATAPQWWRKNTKALISPSSDGQFIATALEMAGFPGIRIST
                     AKPGDTAKARQAVAAFREAINHVAEGGALVVTPDGPRGPNEIIAPGSLQIARRSKQPV
                     FLMGIAAKPAMQLEGWDRMMFAAPFGRGAVVWEGPLYVPPDADEAQVAALIADWSARL
                     SAVTRRAEALVGRTPPATAH"
     gene            complement(3884..5665)
                     /locus_tag="VHN39_05660"
     CDS             complement(3884..5665)
                     /locus_tag="VHN39_05660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEX2815856.1"
                     /translation="MSESAPPELSARALIARVARIYLAPRWKGWITAFLAAIATAFFT
                     TELAQILEPATNDLFINHKPGQLVRLPLMIVAIGLARMLASVTSASLINRMGNGVVGD
                     VQVQLFARMVRADIARIRSQHSGSYVASVLYDAGLIREAVTSGFINYTQNLLIVIGAV
                     TVMIANDRLLTIAVIVVAPLASTIMRRFSRRSSKAARGAMAETSALSTAIMESLDGVR
                     IVKIENREAYEEERVAEVVQRRQTHLIKGANARAFAAPSTELVMTLVTAVVLYYAGFR
                     SQQGHMTAGAFVAFMAALAMGSQSLRQVANLQTVFAEGMTAARRLFAALDVEPEVRER
                     AGAGELALTEGAVRLENVGFRYEGDGPAILNGVSLEARRGETVALVGPSGGGKSTILN
                     LIPRFYDPTGGRVTLDGVDVRDVTLKSLRSQIALVTQEAFLFDDTIRANIAYACPDAS
                     AEAVEQAAREAAAHDFILALPKGYDTQVGEAGARLSGGQRQRIAIARAFLKDAPILLL
                     DEATSALDTESEAQVQVALKRLMAGRATILIAHRLSTVRGADRIYVIDKGRIVETGDH
                     QGLVRKRGLYARLAKTQDLEADTETAA"
     gene            5772..6455
                     /locus_tag="VHN39_05665"
     CDS             5772..6455
                     /locus_tag="VHN39_05665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein tyrosine phosphatase"
                     /protein_id="HEX2815857.1"
                     /translation="MTLAPTKPGFDLATPGGRFKTYVDYLWNDHAYLRLGFQNAHWIS
                     DELVRTNQPWPHQLAAWKAQGVKTIVNLRGGFDASFHALEKDACQRLGLEMVDFTITS
                     REVPSRDRVLGARRLYETIAYPALIHCKSGADRAGIMSVLYMHFRKGLPIREALDQLH
                     LRYLHLKQGKTGVLDYVFERYLTEGEPAGMSFTEWVESPMYDPAGMKADFRAGMLGAL
                     LTEKLLRRE"
     gene            complement(6458..6706)
                     /locus_tag="VHN39_05670"
     CDS             complement(6458..6706)
                     /locus_tag="VHN39_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018083183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4170 domain-containing protein"
                     /protein_id="HEX2815858.1"
                     /translation="MPDKQLLHLVIGGELKSLEGPAEFKNLAKVDLVGAYPNYRQAMA
                     AWRGKAQQTVDNALVRYFIIHAHKLLDPESDQDHDHDH"
     gene            complement(6795..>7117)
                     /locus_tag="VHN39_05675"
     CDS             complement(6795..>7117)
                     /locus_tag="VHN39_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="metallopeptidase TldD-related protein"
                     /protein_id="HEX2815859.1"
                     /translation="PGVGPSNLTLQPGTRSQAELMADAGAGLLVTSMFGPSLNGNTGD
                     WSVGCSGFWFEGGEIAYPVNEITVAGNLIDIYGRLVPGADLEIRGSSNAPSILIDALA
                     IAGL"
BASE COUNT         1077 a         2485 c         2508 g         1047 t
ORIGIN      
        1 tgagtgtcga ttcctcatag gccgcatggt ccgggaacgg agcgaagtcg gcgagttcgc
       61 agccggcggc ctgcagcgcg cgctccacct tccacggctt gccgatgccc gcgaagccga
      121 cttgcgggcc ggacggcggc gggttggcgg gattgaggtg gccggtcagc aggggcggtc
      181 ccttgagcat ggcgatcagc tcaggatcgg tctcggcgac ctccgccggc agcagcacca
      241 gcaccgcgtc ggcccgcgaa aggcccgcgg ccagcggctc gcgcatcgga ccggccggga
      301 atacgcggcc gtcgccgaag ggccagtcgt cgccgcgcgt ctcgccgtcc accaccacca
      361 gcgacagcgt cttcttcagc gaggggttct ggtggccgtc gtccatgacg atcacctggg
      421 cgccggccga ggccgcggcg aaggcgccgt cggcgcggtc gtgggccacc cagaccggat
      481 agtcccgagc cagcatcagc ggctcgtcgc ccacatcggc gctggtgtgg acggcgggat
      541 cgacccgcac cggaccctcc agccgcccgc catagccgcg cgacagcagg tggacagcct
      601 tgccccgcgc cgccagccgt tcggcgagcg cgcggaccac cggggtcttg cccacgccgc
      661 ccatggtcag gttgcccacg cagatcaccg gcacgccggg atcgaagggc gtggcgcgcg
      721 cgatccgccg cgccgtcacc gccgcccaga tccaggagac cggggtcagc aggaagcgcg
      781 tgcgcgccat gccgccgccc cggctcgtcg cctcgcgcgt gtaccaccag cgcggcgtcg
      841 agagcttcat gcgggcaaca ggggttcgac gagcgccagt gcgcggtcca gcgccgcgcc
      901 ctggcgaccg gcgtaggcgc tcgccgcctc gccgatccgc cggacaatca ccggattgtc
      961 caggaggccg cgcaggtggc gggcgagcgc cgcggcgtcg gcggcctcga tgacggccgc
     1021 gtcggccagc atctcggcgt agatttcccg cgcgttgaag acgtttggcc cgctgacgat
     1081 ggccgcctcc agccgtgcgg cctccagcgg attgtggccg cccacgccgt ccgcgaaacc
     1141 accgcccatg accacagcgt cggcggcgac atagaaggcg ccaagctcgc ccagcgtatc
     1201 gacgacatag gccgtggtcg ccggcgtgac cggctcgccc gccgcgcgcc gggcgacctg
     1261 gaagcccgcc gccgccagct ccgccgccac ctgggggcca cggtccggat ggcgcggggc
     1321 gacgatcagc agggcgtcgg gaccgctggc tgcggccgtc cggaaggctc cggcgaccag
     1381 cgcctcctcg ccgggatggg tgctggcggc gagcacgatt ccgcgcccgt tcgcgcccgc
     1441 cttcagcgcc gcgacgagtt ccgcgtccac cggcggcgcc tcgaccacca gcttcaggtt
     1501 cagctgcgga ccggtgtcgg cgcccagccc tgacaaccgc atctcggtct ccgtgtcttg
     1561 cggcaggacc agatcgaagg cccgcagcag ggcccgcgct gtcgccggcg cgcggcccca
     1621 acccgtggcg ctgccctcgg tcatccgcgc tgacagcagg gccaggcgga tgccgcgagc
     1681 gcgcgccgcg acgatcaggt tgggccagag ttcgctctcg acgaacagcg ctgcgcccgg
     1741 ccgccagtga tcgaggaacc gggccgccgc gcccggcgca tccaccgggg cgaactggtg
     1801 gatcacgccc ttcggcaagc gcttggccag cacctcggca gaggtgaccg tgccggaggt
     1861 gacgaggatg ttgaggtcgg gccgccgggt cctgagcccc gcgatcagcg gcagcagcga
     1921 caggctctcg ccgacgctca ccccatgcag ccaaaccagc gggccctcgg gccgtgcgag
     1981 ggagctccgc cccaggcgtt cgttcagccg gctcgcgtct tccttgcccc ggatggcccg
     2041 tcggcggagc agctccggcg ccagcggctc gaagaggccg gtcgccgcgg cgtagagcgc
     2101 cagcggcagg gtgcgcgggg ctcggctcac accaccccgt gcggcgccag cctgcaggcg
     2161 gtctcgctgt cggtctccac ctgcagggtc gaatggccga tgttgaaacg caccgacagc
     2221 gcctcgcagg tggtgtgcag gaactggtcg gcgtcgtcgt tcgccgggcg gatgacgtgg
     2281 gcggtgagcg ccgtctccgt cgtgctcatg gcccagatgt gcaggtcgtg gatctcctcg
     2341 acgccgggaa gggccgccag ccaggcgcgc acctcggcca cgtcgatctc ccgcggcgcc
     2401 ccgtccaggg ccagattcac cgaatcgcgc agcaggcccc aggtcccggc cacgatgacc
     2461 accgcgatgc ccaggctgag caccgggtcg atccattgca ggccggtgag cgcgatgacg
     2521 ccggcgccga tcaccaccac caccgagatc accgcgtcgc tggccatgtg caggaaggcg
     2581 ccgcggacgt tcaggtcctc cttgccgccc cgcatgaaca gcagcgccgt cgccgtattg
     2641 atcgccacgc cgatggcggc ggtgatcatc accgtcgtcg tgtggacgac attgggcagg
     2701 gtcaggcggt ggatcgactc tgaaacgatc ccgccgatcg ccagcagcag gaagaccgca
     2761 ttgcccagcg aggccaggac ggtgcccttg cgcaggccgt aggtccggcg gctggtcggc
     2821 gcgcgcttgg ccagcacggt cgcgccccag gccatcagca acgccaggac gtcggagagg
     2881 ttgtgaccgg cgtcggccaa cagcgccatc gagtgcgaca ggaaccccgc gcccacctcg
     2941 accgccacga agacggtgtt caacgtcacc ccgatggcga aagcgcggcc catgtcggcg
     3001 gggacatgat gatgatggcc gccatggctg tgactatggc cgtgcccatg cttgtgggcg
     3061 gcgtgggcgt gaccgtggtc atgcccgtgc tcgtcgccgt gctcatggtc gtgatcgtgg
     3121 tggtcgtgcg agtgggccat gggcctatgt ctcaccgtgg gcggacggga tcaatgcgcg
     3181 gttgcgggtg gcgtgcggcc gaccagcgcc tcggcgcggc gggtcacggc cgaaagccgg
     3241 gccgaccagt cggcgatcag ggcggcgacc tgggcctcgt cggcgtcggg cggcacatag
     3301 agcgggcctt cccagaccac cgcgccacgg ccaaacgggg cggcgaacat catcctgtcc
     3361 cagccctcca gctgcatcgc cggcttggcc gcgatgccca tcagaaacac cggctgcttc
     3421 gagcgccggg cgatctgcag ggagccgggc gcgatgatct cgttggggcc gcgcggcccg
     3481 tccggcgtca ccaccagggc cccgccttca gccacatgat tgatcgcctc gcggaaggcg
     3541 gccaccgcct ggcgggcctt ggcggtgtcc ccgggcttgg cggtggagat gcgaatgccc
     3601 gggaagcccg ccatctccag cgccgtggcg atgaactggc catcggagga gggcgagatc
     3661 agcgccttgg tgttcttgcg ccaccactgg ggcgcggtcg cgaggcacag cgggatgcgg
     3721 ccatgccaaa acagcgccac ggccccggcc tcgcccgcca gcaccggctc gacgcagtcc
     3781 aggttctcgt gccgccaccg cacggtgcgc aggatcaggc ggatgtaggt ccccaggagc
     3841 cagcccagca gggtctggac ggcgtcgctc cgcagcaact tcttcaagcc gccgtctccg
     3901 tatcggcttc caggtcctgg gtcttggcga ggcgcgcgta gaggccccgc ttcctcacca
     3961 gaccctggtg gtcgccggtc tcgacgatcc ggcccttgtc gatgacatag atgcggtcgg
     4021 cgccgcgcac cgtggagagc cgatgcgcga tcaggatggt ggcgcgcccg gccatcagtc
     4081 gcttcagcgc cacctgcacc tgggcctcgc tctcggtgtc gagcgcgctg gtggcctcgt
     4141 ccagcagcag gatcggggcg tccttcagga aggcccgggc aatggcgatc cgctgccgct
     4201 ggccgccgga gagccgggcg ccggcctcgc cgacctgggt gtcgtacccc ttgggcaagg
     4261 ccaggatgaa gtcgtgggcc gccgcctccc gggccgcctg ttccacggcc tcggcgctgg
     4321 cgtcaggaca ggcgtaggcg atgttggcgc ggatggtgtc gtcgaacagg aaggcttcct
     4381 gggtgaccag ggcgatctgg ctgcgcaggg acttcagggt cacgtcgcgt acatcgaccc
     4441 cgtccagggt cacgcgcccg cccgtgggat catagaagcg cgggatcagg ttgaggatcg
     4501 tggacttgcc gcctcccgac gggccgacca gggccacggt ctcgccgcgc cgggcctcca
     4561 gactgacccc gttcaggatc gccgggccat cgccctcgta gcggaacccg acgttctcca
     4621 ggcgcacggc gccctcggtg agcgcgagct cgccggcgcc ggccctctcg cgcacctccg
     4681 gctcgacatc gagcgccgca aacagccgcc gcgccgccgt catgccctcg gcgaacaccg
     4741 tctgcaggtt ggcgacctgg cgaagcgact gcgaacccat cgccagcgcg gccatgaagg
     4801 ccacgaaggc gccggcggtc atgtggccct gctgcgagcg aaagccggcg tagtaaagca
     4861 ccacggcggt caccagggtc atcaccagtt cggtggaggg cgcggcgaag gcccgggcgt
     4921 tggctccctt gatcaggtgg gtctggcggc gctggaccac ctcggccacg cgctcttcct
     4981 cgtaagcctc gcggttctcg atcttgacga tcctgacccc gtccaggctc tccatgatcg
     5041 ccgtcgacag cgccgaggtc tcggccattg cgcctcgggc ggccttgctg ctgcgtctgg
     5101 agaaccggcg catgatcgtg ctggccagcg gggcgaccac gatcacggcg atggtcagca
     5161 gccggtcgtt ggcgatcatc actgtcaccg ccccgatcac gatcagcagg ttctgggtgt
     5221 agttgatgaa gccagaggtc acggcctcgc ggatcaggcc ggcgtcatag agcaccgagg
     5281 ccacgtagga gccggaatgc tggctgcgga tgcgcgcaat gtcggcgcgg accatccgcg
     5341 cgaacagctg cacctggacg tcgcccacga cgccgttgcc catgcggttg atgagtgagg
     5401 ccgaggtcac ggaggcgagc atgcgcgcca gcccgatggc cacgatcatc agaggcaggc
     5461 gcaccagctg gccgggcttg tggttgatga acaggtcgtt ggtcgccggc tcaaggatct
     5521 gggccagttc ggtcgtaaag aaggcggtgg cgatcgcggc caggaaggcg gtgatccagc
     5581 ccttccatct cggcgccaga taaatccgcg ccacccgcgc gatcagggcc cgggcggaaa
     5641 gctctggtgg ggcgctctcg ctcatagggc tggcgtcgtc cgatgcgggg ttgaagtcaa
     5701 gaaggcgggc ccctgcggca tcgggctcgc tgcgcttccg tcgaggcggt ggaagcctta
     5761 ggtagggcgc gatgacgctc gcgccaacca agcctggatt cgacctcgcc acgccgggcg
     5821 ggcggttcaa gacctatgtc gactatctgt ggaacgacca cgcctacctg aggctcggct
     5881 tccagaacgc ccactggatc tccgacgaat tggtgcgcac caaccagccc tggccgcatc
     5941 agctggccgc ctggaaggcg cagggcgtca agaccatcgt caatctgcgg ggcggcttcg
     6001 acgccagctt ccacgccctg gaaaaggacg cctgccaaag gctcggcctg gagatggtcg
     6061 acttcaccat aacctcccgc gaggtcccca gccgcgaccg ggtgctgggc gccaggcggc
     6121 tctacgagac catcgcctat ccggccctga tccactgcaa atccggggcg gaccgggccg
     6181 gcatcatgag cgtgctctac atgcatttcc gcaaaggcct gccgatccgc gaggcgctgg
     6241 accagcttca tctgcgctac ctgcacctga agcagggcaa gaccggggtg ctcgactacg
     6301 tcttcgagcg ctacctcacc gagggcgagc ctgccggcat gtcgttcacc gaatgggtcg
     6361 agagcccgat gtacgacccg gccggcatga aggcggattt ccgcgccggc atgctgggcg
     6421 cgctcctcac cgagaaactg ctgcgccgcg aataggctca gtgatcgtgg tcgtgatcct
     6481 ggtctgattc cgggtcgagc agcttgtgcg cgtggatgat gaagtagcgc accagggcgt
     6541 tgtcgacggt ctgttgggcc ttgccgcgcc aggcggccat ggcctgccgg tagttcggat
     6601 aggcgccgac caggtcgacc ttcgcgaggt tcttgaattc ggcggggcct tccagagact
     6661 tgagctcgcc gccgatcacc aggtggagga gttgtttgtc aggcatggtc tcgtaacgcg
     6721 caaaacgatt gttggcgcag ccgataggcc ccgcgtggct ccggatcaat gccctgctct
     6781 tgtaaagagg gcggctagag cccggcgatg gccagcgcgt cgatcaggat cgagggcgcg
     6841 ttggacgagc cgcgaatctc caggtcggcg ccggggacca ggcggccata gatgtcgatc
     6901 aggttgcccg ccacggtgat ttcgttgacc ggataggcga tctcgccgcc ctcgaaccag
     6961 aagccggagc agcccaccga ccagtcgccg gtgttgccgt tcagcgaggg cccgaacatc
     7021 gaggtgacca gcaggcctgc gccggcgtcg gccatcagct cggcctgact gcgcgtcccg
     7081 ggctgcaggg tcaggtttga tggccccacg ccgggcg
//
LOCUS       DATAJL010000292         5662 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_43630,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000292 DATAJL010000000
VERSION     DATAJL010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5662
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43630"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..576)
                     /locus_tag="VHN39_05680"
     CDS             complement(<1..576)
                     /locus_tag="VHN39_05680"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEX2815860.1"
                     /translation="MTALVPPVRPITLAEIEAARGRIAGTCVRTPLVRLELGAGFPDI
                     RLKLENLQPINAYKLRGAANAVAMLSDEERKKGVWTISAGNAGQGVAYAARKAGVPCT
                     VVAIETAPASKLDRMRALGAKLVLTSYEGAWNALDDRAYPGVEGTFIHPFDDDNFIAG
                     HATMGLEILEDAPDAVAVICGVGGGGLITGVG"
     gene            complement(593..1741)
                     /locus_tag="VHN39_05685"
     CDS             complement(593..1741)
                     /locus_tag="VHN39_05685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2815861.1"
                     /translation="MSKIKPFTVSWSEAQVGAVLDQVRAYPWPPIPEVPDGWAYGCDA
                     GYLKDLCAHWTDAYDWRAVVADLNRFPQFTAQVEDFELHFLHVIGEARGKRPLIVTHG
                     WPGSHYEFWGVIEKLAFPSRFGGQASDAFDVVVPSLPGFGFSSKPKRPIGQRTTARLF
                     NTLMTEVLGYDSYLAQGGDWGAMVTSWLARDHGAHAKAIHLNMLGFRPHGGPQDEAEV
                     AWATRQAGMMDIMGAYFRLQVSKPQSIAWMGAGNPVGQAAWITERFHDWSDLSKKSLD
                     EAYGKDRLLTNIMLYVMTDSFATGAWYYRGLVEEGGLAFQPGERCETPTAFANFPGEP
                     LYQAPPRSFAERAYNITRWTEMPSGGHFAAMEEPDLYVDEVRDWARSL"
     gene            complement(1793..3178)
                     /locus_tag="VHN39_05690"
     CDS             complement(1793..3178)
                     /locus_tag="VHN39_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2815862.1"
                     /translation="MSDAPNPHLMAGLGPPPEKFPPLSKQFSGAGNPFETLPRVIFEQ
                     PIFQTKSAFGGTLMVHDPEGVRRVLLDNVANYPKEELSNRFFTAMFGEGLLSAEPAMW
                     RRHRKIMAPAFDPRSVASYAPAMAAASQAFTERWASLNDPDIDMAEEMKALTLSIICE
                     TMFSSDAAELVSLAGTALGFTRDALNFGLLDILPVIGPLRLKAKQAALHEDFSAMDGA
                     IYRMIEAREKNLAAAPNDLLTRLVAAKDPEDGAGLSAQEVRDEIITIFEAGHETTAVA
                     MTFTWYLLSQHPDAEARLHAELDTVLGGRTPTADDVPSLPYTRQVIEESMRLYPPAPA
                     VTGRRALNNDEICGVKVSAGQRIMISTWVLHRHRALWDEPERFDPDRFSAERSEGRPR
                     FAYMPFGAGPRICIGMGLAMTEATLILATLAQRFQPRLKTPQDVKLSARITLAPEGGL
                     KMRVESRPATA"
     gene            complement(3206..3805)
                     /locus_tag="VHN39_05695"
     CDS             complement(3206..3805)
                     /locus_tag="VHN39_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2815863.1"
                     /translation="MPRVLSDTDVADFRDRLCEAAERLFAERGPDAVTMRQLASELGV
                     SPMTPYRYFEDKEDILAAVRANGFTRFAEALETARDKAKGAPAIGAAVGEAYVGFALE
                     HPHAYKLMFDFNQPHAEKYPELTAAGQRAQKTMTGYVEDAFKEGLMAGDQQQIGLMFW
                     AAIHGAVILDLAGMLPPGASRQVFTGLHAALMRGVRPQD"
     gene            3893..5287
                     /locus_tag="VHN39_05700"
     CDS             3893..5287
                     /locus_tag="VHN39_05700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carotenoid oxygenase family protein"
                     /protein_id="HEX2815864.1"
                     /translation="MDGNVRINPYLAGNFAPVRSEDDFDLTVTGELPAGLRGALFRIG
                     PNPQFEPRDPEHHHWFGGDGMVHGFYVEDGKVRYRNRYVRTPKWELEHEHGRALFGSM
                     GDPRNTDPLAVGSEGGVANTNILWHAGRLMALEEAHQPFEMDVRTLESKGYVRPYKGR
                     VTAHPKIDPVTGEMIWFGYGVGDMPLSAGMSYGVTAADGTVVRRDDFQAPFSSMVHDF
                     MTTENHVLFPILPLTGSLERVMKGLPPFAWEPEKGSHVGVMRRDGDVDSIRWFNTEAC
                     YVFHPLNSWEEGDKIFCDVMRYNVAPLFPKADGSPGDKAAARLVRWTFDLAAPSNAIK
                     EEALDDIDGEFPRVDPRVETRKHRHGWYAADPIGSKTVRLNSIAHLDLQTGKRQVYEL
                     DGGDATSEPVFVPRSAEAPEGDGWITAVIYRAGEDRSDLLVFEAQDIARGPIAVAHMP
                     RRVPFGFHGNWVNL"
     gene            complement(5284..5481)
                     /locus_tag="VHN39_05705"
     CDS             complement(5284..5481)
                     /locus_tag="VHN39_05705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815865.1"
                     /translation="MATYRAYRLDNRRRILDGQWLDAPNDAAAVDQAEELCDDGAPTI
                     ELWQSTRLVEEIDCEDDDQET"
BASE COUNT          871 a         1902 c         1959 g          930 t
ORIGIN      
        1 gccgacgccg gtgatcaggc cgcctccgcc gacgccgcag atcacggcca cggcgtccgg
       61 cgcgtcctcc agaatctcca ggcccatggt cgcgtggccg gcgatgaaat tgtcgtcgtc
      121 aaaggggtgg atgaaggtcc cctcgacgcc gggataggcg cggtcgtcga gcgcgttcca
      181 ggcgccttcg taggacgtca gcaccagctt ggcgcctagc gcccgcatcc ggtcgagctt
      241 ggaggcgggc gcggtctcga tggccacgac ggtgcagggc acgccggcct tgcgggccgc
      301 ataggccacg ccttggcccg cgttgccggc gctgatcgtc cagacgccct tcttgcgttc
      361 ctcgtcgctc agcatggcca cggcgttggc ggcgccgcgc agcttgtagg cgttgatcgg
      421 ctgcaggttc tcaagcttca ggcggatatc cggaaaaccg gcgccgagct ccaggcgaac
      481 cagcggcgtg cgcacgcagg ttccggcgat ccggccgcgc gcggcctcga tctcggcgag
      541 cgtgatgggg cggacgggcg ggacgagagc ggtcatgcgg ttgtctctca cactacaggc
      601 tgcgcgccca gtcgcggacc tcgtccacgt agaggtcagg ctcctccatg gccgcgaagt
      661 ggccgccgct cggcatctcg gtccagcggg tgatgttgta ggcgcgctcg gcgaacgagc
      721 gcggcggggc ctggtagagc ggttcgccgg gaaagttggc gaaggcggtc ggcgtctcgc
      781 aacgctcgcc tggctggaaa gcgaggccgc cttcctccac caggccacga tagtaccagg
      841 cgcccgtcgc gaagctgtcg gtcatcacgt agagcatgat gttggtcagc agccggtcct
      901 tgccgtaggc ctcgtccagg ctcttcttcg acaggtccga ccagtcgtgg aaccgctcgg
      961 tgatccaggc cgcctggccc accggattgc ccgcgcccat ccaggcgatc gactgcggct
     1021 tggagacctg cagccggaaa taggcgccca tgatgtccat catgccggcc tgccgcgtcg
     1081 cccaggcgac ctccgcctcg tcctgcggcc cgccgtgcgg ccgaaagccc agcatgttga
     1141 ggtggatggc cttggcgtgc gccccgtgat cccgcgccag ccaggaggtg accatcgcgc
     1201 cccagtcgcc gccctgggcg aggtagctgt cgtagcccag cacctcggtc atcagcgtgt
     1261 tgaaaagccg cgccgtcgtc cgctggccga tgggccgctt gggcttcgac gagaacccga
     1321 agcccggcag ggacgggacc accacgtcga aggcgtcgga cgcctggccg ccgaagcggc
     1381 tggggaaggc cagtttctcg atgacccccc agaactcgta gtgcgacccc ggccagccgt
     1441 gggtgacgat cagcggccgc ttgccgcgcg cctcgccgat cacatgcagg aagtggagtt
     1501 cgaagtcctc gacctgagcg gtgaactgtg ggaagcggtt gaggtcggcg acgacggccc
     1561 gccagtcgta ggcgtccgtc cagtgggcgc agaggtcctt cagatagccc gcgtcgcagc
     1621 cgtaggccca accatcaggg acctccggga tcggcggcca gggataggcg cggacctgat
     1681 ccagcacggc cccgacctgg gcctcgctcc agctcaccgt gaacggcttg atcttggaca
     1741 tctcgaacct ccctgagcga cgcgcgactt caaggtcctg ccgcggcggc ggtcaagcgg
     1801 tcgcgggccg ggactccacg cgcatcttca ggccgccctc gggggccagc gtgatgcggg
     1861 ccgagagttt cacgtcctgc ggcgtcttca ggcgcggttg gaaccgctgc gccagggtgg
     1921 ccaggatcag ggtcgcctcg gtcatcgcca ggcccatgcc gatgcagatc ctggggcccg
     1981 ctccaaacgg catgtaggcg aagcgcgggc ggccttcgct gcgttcggcc gagaaccggt
     2041 ccgggtcgaa ccgctccggc tcgtcccaga gggcgcggtg gcggtgcagg acccaggtgg
     2101 agatcatgat ccgctggccg gcgctcacct tcaccccgca gatttcgtcg ttgttcaacg
     2161 ccctgcggcc ggtgaccgcg ggagctggcg gataaagacg catggactcc tcgatgacct
     2221 gccgggtgta tggcaggctc gggacatcat cggccgtggg cgtgcggccg cccagcaccg
     2281 tgtcgagctc ggcatgcagg cgggcctcgg cgtccggatg ctgcgacagc aggtaccagg
     2341 tgaaggtcat ggccaccgct gtcgtctcgt ggccggcctc gaagatggtg atgatttcgt
     2401 cgcggacctc ctgggcgctg agccccgcgc catcctcggg atccttggcg gcgaccaggc
     2461 gggtgagaag gtcgttgggg gcggccgcga ggttcttctc gcgcgcctcg atcatccggt
     2521 agatcgcccc gtccatggcg ctgaagtcct cgtgcagcgc cgcctgcttg gccttcagcc
     2581 gcagcggccc gatcaccggc aggatgtcga ggaggccgaa gttgagcgcg tcgcgcgtga
     2641 atcctagggc ggtgccggcc agcgacacca gctcggcggc atccgacgag aacatggtct
     2701 cgcagatgat gctgagcgtc agggccttca tctcctcggc catgtcgatg tcgggatcgt
     2761 tgagcgaggc ccagcgctcg gtgaaggcct gcgacgccgc cgccatggcc ggcgcgtagg
     2821 acgccacgct gcgcgggtcg aaggccggcg ccatgatctt gcggtggcga cgccacatgg
     2881 ccggctcggc gctcagcagg ccttccccga acatggcggt gaagaagcgg ttgctgagct
     2941 cctccttcgg gtagttggcg acgttgtcga gcagcacgcg gcgcacgccc tcgggatcgt
     3001 ggaccatcaa ggtcccgccg aacgccgact tcgtctggaa gatcggctgc tcgaagatca
     3061 cccgcggcag ggtctcgaag ggattgcccg cgccgctgaa ctgcttggac agcgggggga
     3121 atttctccgg cggcggccct aggcccgcca tgaggtgggg gtttggcgcg tccgacattg
     3181 cctgatctcc gtggcgccgg cggggtcagt cctgcggacg gacgccgcgc atcagggcgg
     3241 catgcaggcc ggtgaagacc tgacggctgg cgcccggcgg cagcatgccg gccaggtcca
     3301 ggatcaccgc gccatggatc gccgcccaga acatcaatcc gatctgctgc tggtcgccgg
     3361 ccatcagccc ttccttgaag gcgtcctcga cgtagccggt catggtcttc tgggcgcgct
     3421 gcccggcggc ggtcagttcc gggtatttct cggcgtgcgg ctggttgaag tcgaacatca
     3481 gcttgtaggc gtgcgggtgc tccagggcga agccgacata ggcctcgccc acggcggccc
     3541 cgatcgccgg cgcgcccttg gccttgtcgc gcgccgtctc cagcgcctcg gcgaagcggg
     3601 tgaagccgtt ggcccgcacc gcggccagga tgtcctcctt gtcctcgaag tagcggtagg
     3661 gggtcatggg cgataccccc agctccgagg cgagttggcg catggtcaca gcgtcgggtc
     3721 cgcgctcggc gaacagccgc tcggccgcct cgcagaggcg gtcacggaag tcggcgacat
     3781 cggtgtcaga gagaacccgg ggcatatgcg actcagactt gcacgaaaag gcttgcggaa
     3841 cgctactttt tactgaataa atttacatcg taagtttcaa gggaggctgg cgatggacgg
     3901 caacgtgcgc atcaacccct atctggccgg caatttcgcg cccgttcgga gcgaggacga
     3961 cttcgatttg acggtgaccg gcgagcttcc cgccggtttg cgcggcgccc tcttccggat
     4021 cggtcccaac ccgcagttcg agccccgcga ccccgagcat caccactggt tcggcggcga
     4081 cggtatggtc cacggcttct atgtcgagga cggcaaggtc cgctaccgca accgctatgt
     4141 ccgcaccccg aaatgggagc tggagcacga gcatggccgc gcgctgttcg gctccatggg
     4201 cgatcccagg aacaccgacc cgctggcggt cggcagcgag ggtggcgtcg ccaacaccaa
     4261 catcctgtgg cacgccggca ggctgatggc gctggaggag gcccatcagc ccttcgagat
     4321 ggacgtccgc accctggagt ccaagggcta tgtgcgcccc tacaagggcc gggtcaccgc
     4381 ccacccgaag atcgacccgg tgaccggcga gatgatctgg tttggctacg gcgtcggcga
     4441 catgccgctt tcggccggca tgagctatgg cgtcaccgcc gccgacggga ccgtggtccg
     4501 ccgcgatgac ttccaggcgc cgttctcgtc catggtccat gacttcatga cgactgagaa
     4561 ccacgtttta ttcccgatcc tgccgctgac cggcagtctg gagcgggtca tgaagggcct
     4621 gccgcccttc gcctgggagc ccgagaaggg cagccacgtg ggcgtgatgc gcagagacgg
     4681 cgacgtggat tcgatccgct ggttcaatac cgaggcctgc tacgtcttcc acccgctgaa
     4741 cagctgggag gagggcgaca agatcttctg cgacgtcatg cgctacaatg tggcgccgct
     4801 gttccccaag gccgacggct cccccggcga caaggccgcc gcgcgcctgg tgcgctggac
     4861 cttcgacctg gccgcgccct ccaacgccat caaggaagaa gccctcgacg acatcgacgg
     4921 ggaattcccc cgcgtcgatc ccagggtcga gacccgcaag caccgccacg gctggtacgc
     4981 cgccgacccg atcgggtcca agaccgtgcg gctcaactcg atcgcccacc tcgatctcca
     5041 gaccggcaag cggcaggtct acgagctcga cgggggcgac gcgacctccg agccggtgtt
     5101 cgtgccccgc tcggcggagg cccccgaggg cgacggctgg atcaccgcgg tgatctaccg
     5161 cgccggcgag gaccgcagcg acttgctggt cttcgaggcg caggacatcg cgcgcggtcc
     5221 catagcggtg gcccacatgc caaggcgcgt gccgttcggc ttccacggca actgggtgaa
     5281 cctctaggtc tcctggtcgt cgtcctcgca gtcgatctcc tcgaccaggc gcgtcgattg
     5341 ccatagctcg atggtcggcg cgccgtcgtc gcagagctcc tcggcctgat cgacggcggc
     5401 ggcgtcattg ggcgcgtcca gccattgccc atccaggatg cggcggcggt tgtccaggcg
     5461 gtaggcgcgg tacgtggcca tgcgcagttc cccaagctga agctttcaaa acgagcagcg
     5521 ccgtgaacgg ttgcaagggg ccggttctag tcggcgctcc actcgcggcg tagagatgcg
     5581 tccggcatga gcggcttcca cgccttcgtc gaggaactgt tcgcagggct cgggccggtg
     5641 cgcatccggc gcatgttcgg cg
//
LOCUS       DATAJL010000293         3856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_66492,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000293 DATAJL010000000
VERSION     DATAJL010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3856
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66492"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VHN39_05710"
     CDS             <1..480
                     /locus_tag="VHN39_05710"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX2815866.1"
                     /translation="GFLVIYAIYSLLRPHGAKKEVGGGWLASSLVGMSGGVIGGFTAF
                     PGAAVVVWNGLRHVPKREARAIVQPYIFVLQILSISLLALQKPETFGPTYWLLVAITV
                     PVVLPCTLLGVKLYQQLSDVNFRRVTFVLLGVSGVGLLIKAADTFPVVAHAVRVAGL"
     gene            520..1260
                     /locus_tag="VHN39_05715"
     CDS             520..1260
                     /locus_tag="VHN39_05715"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815867.1"
                     /translation="MSTRRIVVPAPVATLLAYDEKPVVIDHRFINHVIWRGFRGPLNR
                     TDFGRLSIGEYQMNRTKTAGAAAILGVAALLMSSAANATPVKWTLDGITFSDNGVATG
                     SFVFDADTGIYSGINITTSGGSLLPGATYTSYDIFSTPRDFGFGSNVAGFTATGDFLF
                     DINGLTAFTNAGGTVQVGDIGGFVSSEGTCANDGCHNFNPIRGITSGQVDGVAVPEPA
                     TWAMMLAGFGGLGAMMRRRRARTALATT"
     gene            complement(1375..2235)
                     /locus_tag="VHN39_05720"
     CDS             complement(1375..2235)
                     /locus_tag="VHN39_05720"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2815868.1"
                     /translation="MHETEPSKTALGAAAYRAMHQFVDQGRLFADPLALRILGAYGMV
                     LKVQAKLHPKLLDAHRGMRLFISARSAIAEAHLAAGVEARGVRQLVVLGAGLDTFAYR
                     NPFEGKLRVFEVDHPATQAWKRRRLAETRIAIPASLTYAPVDFETDGLLDGLTAAAFD
                     PAQRTFFAWLGVIPYLTREAALATLGVIGALPGGGEVVFDYSDPPETLGADARAAQAE
                     RAAGVASVGEPFLTYFEPADLHAELIARGLSDIEDLGPQKLMTRYFRPGAEPDPARTR
                     GGHVIFAATP"
     gene            2332..2466
                     /locus_tag="VHN39_05725"
     CDS             2332..2466
                     /locus_tag="VHN39_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815869.1"
                     /translation="MKAAIAALTLVACLSAGMAQAQPRHHHRHQVCSMHHHHRVCHWR
                     "
     gene            complement(2528..3742)
                     /locus_tag="VHN39_05730"
     CDS             complement(2528..3742)
                     /locus_tag="VHN39_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEX2815870.1"
                     /translation="MTDSPTDASAMGRRAFMRSAAFLAAAGPIVSEASLAHAKLASQM
                     LGVLPPDAVIINANENPLGPCKAACEAITKILPLGGRYDRMGELTALTNEYAARHNLK
                     PENVAFYAGSSEPLHYTTLAFTGPGKGLVMADPSYESANMAAQISKAPVHKIPLTSTF
                     SHDVKKMVAADPNAGLIYIVNPNNPTGTITPREEILWALENKPKGSILLVDEAYIHLS
                     DEHDVLDQVAAGKDIIVLRTFSKIYGMAGIRCGVAIARPDLLDKLQPYYQNAMPVTAL
                     VAARASLADADLIPTRKKWIADSRVETLAFLKANGFKPVGTSVSNCFMIDTGRPAHTV
                     IAGMQKEKVYIGRIWPVWPNAVRISVGSPDDMASFRTAFKKVMDAPMVASAQPRAGSK
                     SPVGITTDKFLS"
BASE COUNT          594 a         1195 c         1402 g          665 t
ORIGIN      
        1 gggttcctgg tgatctacgc catctattcg ctgctccgcc cccacggggc gaaaaaggag
       61 gtgggcggcg gctggctggc ctcatccctg gtgggtatgt cgggcggcgt gatcggcggt
      121 ttcaccgcct ttccgggggc cgccgtggtg gtctggaacg gcctgcgcca cgtgcccaag
      181 cgcgaggccc gggcgattgt gcagccctac atcttcgtcc tgcagatcct gtcgatctcg
      241 ctgctcgcgc tgcagaagcc ggagaccttt ggacccacct actggctgct ggtggcgatc
      301 acggttccgg tggtgctgcc ctgcacgctg ctcggcgtga agctctatca gcagctgtcg
      361 gacgtgaact tccggcgcgt gaccttcgtc cttctgggag tctcgggggt gggcctgctt
      421 atcaaagcgg ccgacacctt tcccgtggtc gcacatgcgg tgagggtggc ggggctctag
      481 ggacccgggt tccacccaga aatcctctgt gaacggacta tgtcgacccg ccgaatcgtc
      541 gtgccggccc ctgtcgctac gctactcgcc tatgacgaga aaccagtagt catcgaccat
      601 cgtttcatca accatgttat ctggcgcggg tttcgcggcc cgctcaacag gaccgatttc
      661 ggtcgcctga gcatcgggga gtatcaaatg aacagaacta aaaccgcagg cgcggctgct
      721 atccttgggg ttgcggctct tctgatgtcc tcagccgcga acgcgacacc cgtgaagtgg
      781 accctggacg gcataacctt tagcgacaac ggtgtcgcga ccggctcgtt cgtgttcgac
      841 gccgatacgg gaatctattc gggcatcaac atcacgacct cgggcggaag cctcctgccg
      901 ggcgcgactt acaccagcta cgacattttc agcaccccgc gcgatttcgg cttcggctca
      961 aatgtcgctg ggttcaccgc gacaggcgat ttcctgttcg acatcaatgg tctgacggcc
     1021 ttcacgaacg ccggcggcac ggtccaggtc ggcgacatcg gaggcttcgt ctcgagcgag
     1081 gggacctgcg cgaacgacgg ctgccacaac ttcaacccca ttcgcggcat caccagtggc
     1141 caggttgacg gcgtggccgt gccggagccg gcgacctggg ccatgatgct ggcgggcttt
     1201 ggcgggctag gcgcgatgat gcgccgtcgc cgcgcgcgga ccgcgctggc cacgacctga
     1261 tcaggacgac atagcgaacg agagccctgg ccttcccggc caggggtttt tcgcgcgcgc
     1321 gcgctcggcc ggggcccaag ggacgtccga tgcgcggctg aatgtcgatc cagcctaggg
     1381 cgtcgcggcg aagataacgt ggccgccgcg ggtgcgggcc gggtcaggct cggcgcctgg
     1441 acggaagtag cgggtcatca gcttctgcgg gccgaggtct tcgatgtcgc tcagaccgcg
     1501 cgcgatcagt tcggcgtgaa ggtcggcggg ctcgaaatag gtcaggaacg gctcgccgac
     1561 actggcgacg ccggcggcgc gctcagcctg ggcggcgcgg gcgtcggcgc caagggtttc
     1621 cggcggatcg gaatagtcga acaccacctc gccgccgccg ggaagcgcgc cgatcacgcc
     1681 aagcgtggcg agcgcggcct cgcgggtcag gtagggaatg acgcccagcc aggcgaagaa
     1741 ggtgcgctgg gccggatcga acgctgcggc cgtgagcccg tccagcaggc cgtccgtttc
     1801 gaagtccacc ggggcgtagg tgagcgaggc ggggatggcg atccgggtct ccgccaggcg
     1861 gcggcgcttc caggcctggg tggccgggtg gtcgacttcg aagacgcgta gcttgccctc
     1921 gaaaggattg cggtaggcga aagtgtcgag ccccgcgccc aggacgacga gctggcggac
     1981 gccgcgggcc tccacgccgg ccgcaaggtg ggcctcggcg atggccgagc gcgcggagat
     2041 gaagaggcgc atgccgcggt gggcgtccag gagcttgggg tgaagcttgg cctggacctt
     2101 gagcaccatg ccgtaggcgc ccaggatgcg cagcgccagc gggtcggcga agaggcgccc
     2161 ctgatccacg aactgatgca tggcccggta ggcggcggcc ccgagcgcgg ttttgctggg
     2221 ttcggtctcg tgcatccggc tgcttccccc tgaaccttaa ggcgcttcgg ggattatacc
     2281 gccagccccg gggtctttcg atcacgagga ccctttgtgc tggagaagat catgaaagcc
     2341 gccatcgccg ccctgacgct cgtcgcctgc ctgagcgcgg gcatggccca ggcccaaccg
     2401 cgtcatcacc accgccatca ggtgtgttcg atgcatcacc accatcgcgt ctgccattgg
     2461 cgctagacgc cgaaccgggc ggccgggaag atcccggccg ccgcgagcgg gacctggaga
     2521 gcgggtccta ggacaggaac ttgtcggtgg tgatgccgac ggggctcttg gagccggcgc
     2581 ggggctgggc cgaggcgacc atgggggcgt ccatcacctt cttgaaggcg gtgcggaagc
     2641 tggccatgtc gtccggcgag cccaccgaga tgcgcacggc gttgggccag accggccaga
     2701 tgcggccgat gtagaccttc tccttctgca tcccggcgat caccgtgtgg gccgggcggc
     2761 cggtgtcgat catgaagcag ttggagaccg aggtccccac cggcttgaag ccgttggcct
     2821 tgaggaaggc cagcgtctcg acgcggctgt cggcgatcca cttcttgcgg gtcgggatca
     2881 ggtcggcgtc ggccagcgag gcgcgggcgg cgaccagcgc cgtcaccggc atggcgttct
     2941 ggtagtaggg ctgcagcttg tcgagcaggt cgggcctggc gatcgccacg ccgcagcgga
     3001 taccggccat gccgtagatc ttggagaagg tgcgcaggac gatgatgtcc ttgcccgccg
     3061 ccacctggtc cagcacgtcg tgctcgtcgg acaggtggat ataggcctcg tcgaccagca
     3121 ggatcgaccc cttgggcttg ttctccagcg cccagaggat ctcctcgcgc ggggtgatgg
     3181 tgccggtcgg gttgttggga ttgacgatgt agatcaggcc ggcgttgggg tcggcggcga
     3241 ccatcttctt gacgtcgtgc gagaaggtcg aggtcagcgg gatcttgtgg accggcgcct
     3301 tggaaatctg ggcggccatg ttggccgatt cataggaggg gtcggccatg accagaccct
     3361 tgcccgggcc ggtgaaggcc agcgttgtgt agtgcagggg ctccgaggag ccggcgtaga
     3421 aggcgacgtt ctcgggcttc aggttgtgcc gggcggcata ttcgttggtg agcgcggtca
     3481 gctcgcccat gcggtcgtag cggccgccca gcggcaggat cttggtgatc gcctcgcagg
     3541 ccgccttgca ggggccgagc gggttttcgt tggcgttgat gatcaccgcg tccggcggca
     3601 gcacgcccag catctgggag gcgagcttgg cgtgggccag gctggcttcg ctgacgatcg
     3661 gtccagcggc ggccaggaag gcggcggatc gcatgaaggc gcggcggccc atggccgagg
     3721 cgtcggtagg ggagtcggtc acgggctgaa tccttctgca ggcgcggcgg cggaggcgcg
     3781 cgcgaatctt ccagccgaag gaggcggcca gggtcggccg acggcaaccg gaatcggcgc
     3841 tgcaagggcc gtgggg
//
LOCUS       DATAJL010000294         1989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_43703,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000294 DATAJL010000000
VERSION     DATAJL010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43703"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1221
                     /gene="secY"
                     /locus_tag="VHN39_05735"
     CDS             <1..1221
                     /gene="secY"
                     /locus_tag="VHN39_05735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEX2815871.1"
                     /translation="PIPGINIAAFGQAFEGQSKGILGMFNMFSGGAVRNMAVFALNVM
                     PYISASIIVQLLGTVYPPWEKLKKEGGEAGRKTMNQYTRYLTVILAVFQSFGIAMGLQ
                     SGQGIVDNPGLFFVICTMATLTGGTLFLMWLGEQITSRGVGNGVSLIIFAGIVAVFPR
                     YINQAFQLARTGSMNPGALLVIGVLVVGVTVAIVFMERSQRRLLVQYPKRQVGNRMFG
                     GDTSFLPLKINTSGVIPPIFASSLLLLPATVMGFAANANLPNWLQWVPGAVGQLQHGR
                     PLFMLLYGALIVFFCFFYTSVVFNPEDTAENLRKYGGFMPGIRPGKRTAEYLDFVLTR
                     LTVIGAAYIAIVCLLPEALIGFYNAPFYMGGTSVLIVVSVTMDTVTQIQSHLLAHQYE
                     GLIKKSKLRGNRGR"
     gene            1270..1842
                     /locus_tag="VHN39_05740"
     CDS             1270..1842
                     /locus_tag="VHN39_05740"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEX2815872.1"
                     /translation="MNLILFGPPAAGKGTQAKRLVEARKMVQLSTGDMLRAAIASGSA
                     LGKKVSGIMERGDLVSDEIVIALIEERLPEAEAAGGAIFDGFPRTLAQAEALDAMLAH
                     RGSRIDLVIRLKVDDEALMQRIAGRYAEGGRPDDNPESFKVRLDAYNTQTAPLLPYYG
                     DQNKLVEVDGMGSVETVAKAIDEALAKPRW"
BASE COUNT          323 a          677 c          636 g          353 t
ORIGIN      
        1 ccgattcccg gcatcaacat cgccgcgttc ggccaggcct tcgagggcca gtcgaagggc
       61 atcctgggca tgttcaacat gttctccggc ggcgccgtgc ggaacatggc ggtcttcgcg
      121 ttgaacgtga tgccctacat ctccgcctcg atcatcgtgc agctcctggg gacggtctat
      181 ccgccctggg agaagctgaa gaaggagggc ggggaagctg gtcgcaagac catgaaccag
      241 tacacccgct acctgaccgt gatcctggcg gtcttccagt ccttcggcat cgccatgggc
      301 ctccagtcgg gacagggcat cgtcgacaat ccaggcctgt tcttcgtcat ctgcaccatg
      361 gccacgctca ccggcggcac gctgttcctg atgtggctgg gcgagcagat caccagccgc
      421 ggggtcggca acggcgtctc gctgatcatc ttcgccggca tcgtcgcggt cttcccgcgc
      481 tacatcaacc aggccttcca gttggcccgc accggctcga tgaaccccgg cgcgctcctg
      541 gtcatcggcg tgctcgtggt gggcgtcacc gtggccatcg tcttcatgga acgctcccag
      601 cgccggctgc tggtgcagta cccaaagcgc caggtgggca accgtatgtt cggcggcgac
      661 acctcgttcc tgccgctcaa gatcaacacc tcgggcgtga tcccgccgat cttcgcctcc
      721 agcctgctgc tgttgccggc gaccgtcatg ggtttcgcgg ccaacgccaa cctgcccaac
      781 tggctccagt gggtgcccgg cgcggtgggc cagctgcagc atggccggcc gctgttcatg
      841 ctgctctatg gcgcgctgat cgtcttcttc tgcttcttct atacctccgt ggtgttcaat
      901 ccggaggaca cggcggagaa cctgcgcaag tacggcggct tcatgcccgg catccggccc
      961 ggcaagcgca cggcggaata tctcgatttc gtgctgaccc gtctgaccgt gatcggcgcg
     1021 gcctatatcg ccatcgtctg cctgttgccc gaggccctga tcggcttcta caacgccccc
     1081 ttctacatgg gcggcacctc ggtgctgatc gtggtcagcg tcaccatgga cacggtgacc
     1141 caaatccagt cacacctctt ggcgcaccag tacgaaggtc tgatcaagaa gtcgaagctg
     1201 cggggcaacc gcggtcggta gggggtaggt tcgccgatcc cgccaagagg accggcgacg
     1261 ggaggactga tgaatcttat cctgttcggt ccgccggcgg cggggaaggg cacccaggcc
     1321 aagcgcctgg tcgaggcccg caagatggtc cagctctcca ccggcgacat gctgcgcgcg
     1381 gccatagcgt cgggctcggc gctcggcaag aaggtgtcgg ggatcatgga gcgcggcgac
     1441 ctggtctctg acgagatcgt catcgccttg atcgaggagc gcctgcccga ggccgaggcc
     1501 gccgggggcg cgatcttcga cggcttcccg cgaaccctgg cccaggccga ggcgctggac
     1561 gccatgctgg cgcaccgcgg ctcgcgcatt gacctggtca tccgcctgaa ggtcgacgac
     1621 gaggccctga tgcagcgaat cgctggccgc tacgccgagg gcggccgccc ggacgacaac
     1681 ccggaaagct tcaaggtccg gctggacgcc tacaacaccc agaccgcgcc gctgctgccc
     1741 tactacgggg accagaacaa gctggtcgag gtcgacggca tgggttccgt cgagactgtg
     1801 gccaaggcca tcgacgaggc gctcgcaaag ccgcgctggt agggcgcgag agagggccgc
     1861 cggcatgtcc agacggttcg cactccgtag gtttctgaca ggtctcggaa ctgggctcgc
     1921 gcttctgacg ctcggtccca tcggcgccca ttcgcagacc cctcgaccgg catcgccccc
     1981 gaagcagcc
//
LOCUS       DATAJL010000295         6786 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_56460,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000295 DATAJL010000000
VERSION     DATAJL010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6786
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56460"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(92..307)
                     /locus_tag="VHN39_05745"
     CDS             complement(92..307)
                     /locus_tag="VHN39_05745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEX2815873.1"
                     /translation="MSEPDLPDTVPPPEVDPRLLEILVCPVTHGVLEYDRAKGELISR
                     SARLAYPIRDGVPIMLPEEARELGDGD"
     gene            complement(371..1582)
                     /locus_tag="VHN39_05750"
     CDS             complement(371..1582)
                     /locus_tag="VHN39_05750"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX2815874.1"
                     /translation="MSGRSVYINWIVTSYTGWGVYGLNLLLHWCRDPDLTPFVSGAFH
                     NNTLALDPLQRLAVSPVLQRSLEFQEKLKAFQNGVATVQAPALNYLDESFVVGTVKHH
                     VRLEGTPTIGVTFFETTQLDPDAVARALKYPLVVTGSTWNTDILRAHGLKSLRLVIQG
                     VDPTLFHPAPRAGFMGDRFLVFSGGKLERRKGQDIVMAAFRRFAEKHPDALLVTAWHS
                     LAKGYASSLDASDLTAPVTFKPSEGGDQSSDIVDVRAWALANGVGPGQILDLGLVSNS
                     QMPMVLREMDVALFTNRAEGGTNLVAMECMACGVPTILSRNTGHLDLIEDDNCFQLVH
                     QGSLEGREAGFGDVPGWGESDVDEVLEQLERVYAHRQEARERGMRGAAFLSQYGWSRT
                     AAQMKDIVVSA"
     gene            complement(1579..2559)
                     /locus_tag="VHN39_05755"
     CDS             complement(1579..2559)
                     /locus_tag="VHN39_05755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronic acid decarboxylase family
                     protein"
                     /protein_id="HEX2815875.1"
                     /translation="MGDRVLVTGGAGFIGSFLCERLLAQGHEVLCVDNFFTGRRENIR
                     PFLSHPNFELLRHDVTFPLFVEVDRIYNLACPASPRHYQFDPVQTTKVSVHGAINMLG
                     LARRLKAPILQASTSEVYGDPSVHPQTEDYWGNVNPIGPRSCYDEGKRCAETLFFDYW
                     RQHSVRIKVARIFNTYGPRMQLDDGRVVSNFIVQALRGEPITIYGSGAQTRSFCYVDD
                     LVDGLTRLMETPDDVTGPINLGNPQECSIAELAKTIIALTGSRSGLVERPLPSDDPRQ
                     RQPDISLAGRTLDWAPTTGLQDGLTKTIAYFDALLRRSEPGLAAETGGAV"
     gene            complement(2621..3280)
                     /locus_tag="VHN39_05760"
     CDS             complement(2621..3280)
                     /locus_tag="VHN39_05760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LON peptidase substrate-binding
                     domain-containing protein"
                     /protein_id="HEX2815876.1"
                     /translation="MAPYRRIADLPQMIPVFPLDGALLLPGGDLPLQIFEPRYLNMID
                     DVMAGDRIIGMIQTRQGGDRERPKLSDVGCAGRVTAYAETSDGRYLITLTGVCRFDAG
                     AELSIPTPYRQLRARYERFEADLDETGEALAPEAARNRFAKALKRYLNRRELDIDWET
                     AQTAPLEALVNSLAMGLPFEPAEKQALLEAPDLAGRFETLATLLEIDGEDGDDEGHSV
                     Q"
     gene            complement(3301..4203)
                     /locus_tag="VHN39_05765"
     CDS             complement(3301..4203)
                     /locus_tag="VHN39_05765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010917999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0061077 - chaperone-mediated protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HEX2815877.1"
                     /translation="MSLIGETAGAPAGDHIKDATDASFIDDVVEASKTAPVIVDFWAP
                     WCGPCRQLGPALEKAVAAAKGKVKLVKVDIDANPAYAGQLRVQSIPAVFAFVDGKPVD
                     GFMGALPDSQVRAFVDKLAKLAPGGASPIDEALEMARESLELGDMGGAAQAYAQVLQA
                     DPQHPKALGGLAKVYMASGDTERAGEVLAMAGPDAKDPDLDSVRAALALAAEAPSDTT
                     AFEARLAKDPEDHEARFELAKALAGAHRLEEAAGELLTIIQKDRTWNDEAARKQLLTI
                     FEAAGQMSEIARNGRRRLSAILFS"
     gene            complement(4381..4893)
                     /locus_tag="VHN39_05770"
     CDS             complement(4381..4893)
                     /locus_tag="VHN39_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/EbsC family protein"
                     /protein_id="HEX2815878.1"
                     /translation="MKSRADLMALLADLGIETLTHEHPAVFRVGEGEEVKAAIPGAHT
                     KNLFLKDAKAKLWLISAADRTVIDLKRLHTVIGSARLSFGSAGLMEETLGVTPGSVTA
                     FGLINDTGHRVRFVLDRVLADAARVNFHPLTNTATTGIDQAGFLRFLAAVGVTPMIVD
                     FAAMTVVRES"
     gene            5006..5728
                     /locus_tag="VHN39_05775"
     CDS             5006..5728
                     /locus_tag="VHN39_05775"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815879.1"
                     /translation="MKLRLLALAATAATALMASSANAAVVSAFFDPLAWGLNAGETDI
                     TQFEGGPALANTTFLQAGFAISGSAQLFNGSVGGVSAAPAVPSTSPVYDGSGHDGSQY
                     LSVQGGETATLSLGGGLTEISFYIGSIDTYNTMAFHYADGTFELPVNTGAWVSDHTIT
                     QSNGDQQSGNTNGRLTFTFDKPIDSVVLGSGSNAFEISDVAGIAAGVPEPASWALMIL
                     GFGGAGAALRGQRRRQASVATA"
     gene            5878..6621
                     /locus_tag="VHN39_05780"
     CDS             5878..6621
                     /locus_tag="VHN39_05780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6065 family protein"
                     /protein_id="HEX2815880.1"
                     /translation="MELECYPTTERPPEIVPGRPTRAWMDAFHARHAYRCLPLNMANT
                     SGWEILCPVAFTAEWNGGIRQEDITLKPDYPSPDFHRLASSHFSHGVLTMHPGYLFRT
                     PPGWSMLTMGSPNHVKDGIQALAGVVETDWLPFPFTMNWLFTRPGKIRFDKGEPFCFI
                     TLMQDKPLHEIQPVIRRMDTNPELRNQYDVWEKHRSEFNQRIFRQDPEATKEAWQRYY
                     FKGEYPEEIAPAREDHVNKRRLKEPKIGR"
BASE COUNT         1125 a         2291 c         2260 g         1110 t
ORIGIN      
        1 ctggaaggtc accaggccga tcccggcagt gatcatcacc accgcgccga tcacatgggc
       61 gatcccgaac cggcggacgg tgctgaacct tctagtcgcc atcgcccaac tcgcgggcct
      121 cttccggcag catgatcggc acgccgtcgc ggatcgggta ggcgaggcgg gcggagcggc
      181 tgatcagctc gcccttggcc cggtcgtact ccaggacccc gtgggtcacc gggcagacga
      241 ggatttccag cagccgcgga tcgacctcag ggggcgggac agtgtcggga aggtcaggct
      301 cgctcatgac cggcagtcct actgcaccgc gtggccttcg tcatcgccgg cgtcgggctt
      361 tcgcgcgggc tcaggctgaa accacgatgt ccttcatctg cgcggcggtc cgcgaccagc
      421 cgtattgact gaggaaggcc gcgccgcgca tcccccgctc gcgcgcctcc tggcgatggg
      481 cgtagacccg ctccagctgc tccaagacct cgtcgacatc gctttcgccc catcccggaa
      541 catcgccgaa gccggcttcc cgaccctcca gcgaaccctg gtggacgagc tgaaagcagt
      601 tgtcgtcctc gatgagatcg agatggccgg tgttgcgcga caggatggtc ggcacgccgc
      661 aagccatgca ttccatggcg acgagattcg tcccgccctc ggcccgattg gtgaacaggg
      721 ccacgtccat ctcccgcagc accatcggca tctgcgagtt tgaaaccagg ccaagatcca
      781 ggatttggcc aggtccgacc ccgttggcca gcgcccaggc gcggacgtcg acgatgtctg
      841 acgattgatc gccgccctcc gacggtttga aggtgacggg cgcggtaagg tcggaggcgt
      901 caagtgaact ggcatagccc ttggcgagcg agtgccaggc ggtgaccagc agcgcatccg
      961 gatgcttttc ggcgaacctg cgaaacgcgg ccatgacgat atcctggccc ttgcggcgct
     1021 ccagttttcc gccactgaag accaggaagc ggtcgcccat aaagccggct cgcggcgccg
     1081 ggtggaaaag cgtcggatcg accccctgga tgaccaatcg caggctcttc aatccgtgcg
     1141 cgcgaaggat gtcggtgttc cacgtcgagc cggtgaccac gagcgggtat ttgagcgccc
     1201 tggcgaccgc gtcgggatcg agctgggtgg tctcgaaaaa cgtcacgccg atggtcgggg
     1261 tcccctccag ccgaacgtgg tgcttcaccg tgcccacgac gaaactttcg tccaggtagt
     1321 tcagggcggg agcctgaacg gtcgcgacac cgttctggaa cgccttcagc ttttcctgga
     1381 actccagcga tcgctgcagc acggggctca cggcgaggcg ctgcaggggg tcgagcgcga
     1441 gggtattgtt gtggaacgcc cccgagacga agggcgtgag gtccgggtcc cgacaccaat
     1501 ggagcaggag gttcaggccg tagacgcccc agccggtata gctggtgacg atccagttta
     1561 tgtagaccga gcgtccgctc aaaccgcgcc cccggtctca gccgccagcc caggctctga
     1621 gcgtcgcagc agcgcgtcga aataggcgat ggtcttggtg agtccatcct gcaggcccgt
     1681 agtcggcgcc cagtccaggg tccgccccgc cagagagatg tccggttggc gctgacgcgg
     1741 atcgtcgctg ggcaggggcc gttccacgag cccggagcgg ctgccggtca gcgcgatgat
     1801 ggtcttcgcc agctccgcga tgctgcattc ctggggattc ccgagattga taggccccgt
     1861 cacgtcgtcc ggagtttcca tgaggcgggt cagcccgtcg acgaggtcgt ccacgtagca
     1921 gaaggatcgc gtctgggcgc ccgacccata gatcgtgatc ggctcgccgc gcagggcctg
     1981 gacgatgaaa ttggacacca cccgcccgtc gtcgagctgc atgcgcggac cataggtgtt
     2041 gaagatgcgc gcgaccttga tgcggacgct gtgctggcgc cagtagtcga agaacagggt
     2101 ctcggcgcag cgcttgccct cgtcataaca agagcgcggc ccgatcggat tgacgttgcc
     2161 ccaatagtcc tcggtctgcg gatggacgga ggggtccccg tagacctccg aggtcgaggc
     2221 ctgcaggatc ggcgccttca accgccgggc caggcccagc atgttgatgg ccccgtgcac
     2281 actgaccttg gtcgtctgga ccggatcgaa ctggtagtgg cgtgggctgg ccgggcaggc
     2341 gaggttgtag atcctgtcga cctccacgaa gagcgggaag gtcacgtcgt gccgcagcag
     2401 ttcgaagttc ggatggctga ggaacggccg gatgttctcc cggcggccgg tgaagaagtt
     2461 gtcgacgcaa aggacttcgt gaccttgggc gagcagccgc tcgcacagga acgagcctat
     2521 gaagccggcg ccgccggtca ccaggaccct atcccccatc tgaaatcccc aatgcgatac
     2581 gcgatcctgg tcgaacgcca gccggtccta tagcccggtc ctactgcacc gagtggcctt
     2641 cgtcatcgcc atcctcgccg tcgatctcca acagggtggc cagggtctcg aaacggccgg
     2701 cgaggtcggg ggcctcgagc agcgcctgtt tctccgcggg ctcgaaaggc agacccatgg
     2761 ccagtgagtt gaccagggct tccagcgggg cggtctgggc ggtctcccag tcgatgtcga
     2821 gctcgcggcg gttgaggtag cgcttgagcg ccttggcgaa gcggttgcgc gcggcctccg
     2881 gcgccaacgc ctcgccggtc tcgtcgaggt cggcctcgaa gcgctcgtag cgggcccgca
     2941 gctgccggta gggcgtcggg atcgacagtt ccgcaccggc gtcgaagcgg cagacgccgg
     3001 tgagcgtgat cagatagcgg ccatcggagg tttcggcgta ggcggtgacg cggcccgcac
     3061 agccgacgtc ggagagcttg ggccgctcgc ggtcgccgcc ctggcgggtc tggatcatgc
     3121 cgatgatgcg gtcgccggcc atcacgtcgt cgatcatgtt gaggtagcgc ggctcgaaga
     3181 tctgcagggg caggtcgccg ccgggcaaca gcagcgcgcc atccagcgga aagaccggga
     3241 tcatctgcgg caggtcggcg atgcggcggt agggcgccat ggggcctccg tcccggtggc
     3301 tcaactgaac aggatggccg acaggcgacg gcggccgttg cgggcgatct cggacatctg
     3361 gccggcggcc tcgaagatgg tcagcagctg cttgcgcgcg gcctcatcgt tccaggtgcg
     3421 atccttctgg atgatggtca ggagttcgcc cgcggcctcc tccagccggt gggcgccggc
     3481 cagcgccttg gcgagctcga atcgcgcctc gtggtcttcc gggtccttgg cgaggcgggc
     3541 ctcgaaggcg gtggtgtcgg agggggcctc ggcggccagc gcgagtgctg cgcggacgct
     3601 gtcgaggtcg gggtccttgg cgtcggggcc ggccatggcc aggacctcgc cggcccgctc
     3661 ggtgtcgccg gaggccatgt agaccttggc caggccccca agcgccttgg ggtgctgcgg
     3721 atcggcctgc agcacctgcg cataggcctg ggccgcgccg cccatgtcgc cgagctccag
     3781 ggactcgcgc gccatctcca gcgcctcgtc gatcggcgag gcgccgccgg gggccagctt
     3841 ggccagcttg tcgacgaagg ctcgcacctg gctgtcgggc aatgcgccca tgaagccgtc
     3901 caccggcttg ccgtccacga aggcgaagac tgccgggatc gactgcacgc gcagctggcc
     3961 cgcgtaggcc ggattggcgt cgatatcgac cttgaccagc ttcaccttgc ccttggcggc
     4021 ggcgaccgcc ttttcgaggg ctgggcccag ctggcggcag ggaccgcacc aaggcgccca
     4081 gaagtcgacg atcacaggcg cggtcttgga cgcctcaacg acatcgtcga tgaagctcgc
     4141 gtcggtcgcg tccttgatgt ggtcgccggc cggtgcgccg gcggtctctc cgatcagact
     4201 catactcggg ccctcaaacc tctcccgtga aacacctcgc ccccaagatg gtcccgcaat
     4261 acgacagctt caacgcggtg aaacttgcgc aaacggcggc tccgaatctc gcagcggccg
     4321 gtctgctacc gcatcttccc taagaaataa ggcaacgtgg cgcctggagg gcccggacgc
     4381 ctaggactct ctcacaaccg tcatcgccgc gaagtccacg atcatcggcg tcacccccac
     4441 cgccgccaga aaccggagga agccggcctg atcgatcccc gtcgtggcgg tgttggtcag
     4501 cggatggaag ttcacacggg ctgcgtccgc cagtacgcgg tccagaacaa aacgcacccg
     4561 atggccggtg tcgttgatca gaccaaaggc tgtcaccgag cccggggtca cgcccagtgt
     4621 ctcttccatc agcccggcgc tgccgaacga cagccgggcc gagccgatca ccgtgtgcag
     4681 ccgcttcagg tcgatgaccg tgcgatcagc cgccgagatc agccacagct tagccttcgc
     4741 atccttcagg aacaggttct tggtgtgggc gccggggatc gcggccttga cctcttcgcc
     4801 ctcgccgacc cggaagacag ccgggtgctc gtgggtgagc gtctcgatgc cgaggtccgc
     4861 cagcagggcc atcagatcag cgcgggactt catggctcct cgattgcacg ggccgcgcgg
     4921 ggccgcaaat ccgcgtccca atttggacca atgccgcgct tgcgcctcca cggcagcgcg
     4981 gccgagaaac gaaagactgg acccgatgaa gcttcgcctg ctggccctgg ccgcaaccgc
     5041 cgcgaccgcc cttatggcga gctccgccaa cgctgccgtc gtctcggcct tctttgaccc
     5101 gctggcctgg ggcctcaatg cgggcgagac ggacatcacc cagttcgagg gtggtccggc
     5161 gctcgccaac accaccttcc tgcaggccgg cttcgcgatc tccggctcgg cccagctgtt
     5221 caacggctcg gttggcggcg tcagcgccgc gccggccgtg ccctccacct cgcccgtcta
     5281 cgacggctcg ggccatgatg gatcgcagta tctgtcggtc cagggcggcg agaccgcgac
     5341 gctgagcctc ggcggcggcc tgaccgagat cagcttctat atcggctcga tcgacaccta
     5401 taacaccatg gcgttccact acgccgacgg gacgttcgag ctgccggtca acaccggcgc
     5461 ctgggtctcc gatcacacca tcacccagtc gaacggcgat cagcagagtg gcaacaccaa
     5521 cggccgcctg acgttcacct tcgacaagcc gatcgacagc gtcgtgctgg gctcgggcag
     5581 caacgctttc gagatcagcg acgtcgccgg catcgccgcc ggcgtgccgg agcccgccag
     5641 ctgggccctg atgatcctgg gcttcggcgg ggccggcgcc gcgctccgcg gccagcgccg
     5701 ccgccaggcg tccgtcgcca cggcctgagc cttcctcggg accggttcgg tctcgagccg
     5761 agagacgagc cccggtccgc acttcgcggc cggggttttt ctttgcgcgc ggaccctttg
     5821 cgcaaacggg ggcagccccg tatgggacag gggtcatccc gctcagcgag accgtccatg
     5881 gaactggagt gctatcccac caccgagcgg ccgccggaga tcgtgccggg ccgcccgacg
     5941 cgggcctgga tggacgcctt ccacgcccgc catgcctacc gctgcctgcc gcttaacatg
     6001 gccaacacct ccggctggga gatcctctgc ccggtggcct tcaccgccga gtggaacggc
     6061 ggcatccgcc aggaggacat cacgctgaag ccggactatc cgagcccgga cttccaccgt
     6121 ctggcctcaa gccacttcag ccacggcgtg ctcaccatgc atccgggcta cctgttccgc
     6181 accccgcccg gctggtcgat gctgaccatg ggctcgccca accacgtcaa ggacggcatc
     6241 caggcgctgg ccggcgtggt ggagaccgac tggctgccgt ttcccttcac gatgaactgg
     6301 ctcttcaccc gacccggcaa gatccgcttc gataagggcg agccgttctg tttcatcacg
     6361 ctgatgcagg acaagcccct gcacgagatc cagccggtga tccggcggat ggatacgaac
     6421 ccggagctgc gcaaccagta cgacgtctgg gaaaagcacc ggagcgagtt caaccagcgg
     6481 atcttccgcc aggacccgga ggccaccaag gaggcctggc agcgctatta ctttaagggc
     6541 gagtaccccg aggagatcgc gccggcccgc gaggaccacg tcaacaagcg ccgcctgaag
     6601 gaacccaaga tcgggcgcta gagagtttcc cgcctggcgc gcgacgcgcc aggcgatagg
     6661 aagagcgacc cagcaaaagc ctggagcgct ttgcgctccg ggttcgcttg ccaagcaggg
     6721 gggcgtctgc cataagccgc cttcgatttt tcggggcaat tgacctcgag gagcgcgggc
     6781 gtagct
//
LOCUS       DATAJL010000296         1597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_17983,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000296 DATAJL010000000
VERSION     DATAJL010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17983"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VHN39_05785"
     CDS             complement(<1..294)
                     /locus_tag="VHN39_05785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815881.1"
                     /translation="MPILSRRQAILLLTAASFAAPSTVWTRTEAVLEPIGQYGSPDNV
                     LTIYERDGGLLVDGPRIHAQPFVGDDIRVEIQDGRTVAVIVAGIRMPRRDFGAE"
     gene            421..>1597
                     /locus_tag="VHN39_05790"
     CDS             421..>1597
                     /locus_tag="VHN39_05790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2815882.1"
                     /translation="MAWDFETDPDFQKKLDWIEDFMAEEVEPLSHLGMAVHGSIGREK
                     FIKPLQQKVRDQGLWACHLGPDLGGQGYGQLKLGLMNEKLGRNGLAPTVFGCQAPDSG
                     NAEIIAHYGTDAQKERYLWPLLNGEIRSAFSMSEPTGGSDPLTFKTRAVLDGDEWVIN
                     GEKWFSTNARYSKVLVLYAVTDPDAKDPYRRTSIFLVPTDTPGVEIVRNVAVGGGGEI
                     GGGTEGYVRYTDVRLPYDALLGDRGAAFVIAQVRLGGGRVHHAMRTVGACKNALDLMC
                     KRAVSRTTRDGKLGDLQMVQADIADSWIQLESFRLMVLKTAWLIDKHQDYQLVRKDIA
                     AIKVMMPKVYGDIATKAAHLHGALGVSNEMPFMHMVTSSLVMGIADGPTEVHKVTLAK
                     "
BASE COUNT          297 a          535 c          521 g          244 t
ORIGIN      
        1 ctccgcgccg aagtcgcggc ggggcattcg gattccggcc acgatcacgg cgaccgtcct
       61 gccgtcctga atctcgaccc ggatatcgtc gccaacgaac ggctgggcgt ggatcctagg
      121 gccatcgacc aagagtccgc cgtcccgctc gtagatcgtc agcacattgt ccggcgaccc
      181 gtactgaccg atgggttcca gcaccgcttc cgtccgggtc cagacggtag atggtgcggc
      241 gaaggacgcg gcggtcagca gcaggatcgc ttggcggcgg gacaggatcg gcatggcccg
      301 agcctggagc cgccgtcccg gaatcacaag cgacgttgcg taatgcgaac gcgcgtttga
      361 taatgtcgca aggctgaaaa cataccgcca attctaagaa acgacgcccg ggaggcgacc
      421 atggcttggg acttcgagac cgatccggac ttccagaaga agctcgactg gatcgaggac
      481 tttatggccg aggaggtcga gccgctctcc cacctcggca tggccgtcca cggctcgatc
      541 ggccgcgaga agttcatcaa gccgctgcag cagaaggtga gggaccaggg cctgtgggcc
      601 tgtcacctgg gccccgacct gggcggtcag ggctatggcc agctgaagct cggcttgatg
      661 aacgagaagc tgggccgcaa cggcctggcc cccaccgtct tcggctgcca ggcgccggat
      721 agcggcaacg cggagatcat cgcccactac ggcaccgacg cccagaagga gcgctacctc
      781 tggccactcc tgaacggcga gatccgctcg gccttctcca tgtccgagcc caccggcggc
      841 tccgacccgc tgaccttcaa gacccgcgcc gtgctcgacg gcgacgaatg ggtgatcaac
      901 ggcgagaagt ggttctccac caacgcgcga tactccaagg tgctggtgct ctatgcggtc
      961 accgatccgg acgccaagga cccctaccgc cggacctcga tcttcctggt ccccaccgac
     1021 actcccggcg tggagatcgt ccgcaatgtc gcggtgggcg gcggcggaga gatcggcggc
     1081 gggaccgagg gctacgtccg ctacaccgat gtgcgcctgc cctacgacgc gctgctggga
     1141 gaccgtggcg cggccttcgt gatcgcccag gtgcgcctgg gcggcgggcg ggtgcaccac
     1201 gccatgcgca ccgtcggggc ctgcaagaac gcgctcgacc tgatgtgcaa gcgcgcggtc
     1261 tcccgcacca cccgggacgg caagctcggc gacctgcaga tggtccaggc cgacatcgcc
     1321 gatagctgga ttcagctgga aagcttccgc ctgatggtgc tgaagaccgc ctggctgatc
     1381 gacaagcacc aggactacca gctggtccgc aaggacatcg ccgccatcaa ggtgatgatg
     1441 cccaaggtct atggcgacat cgccaccaag gcggcccacc tgcacggcgc gctgggcgtc
     1501 tccaacgaga tgccgttcat gcacatggtg acgtcgagcc tggtcatggg catcgccgat
     1561 ggccccaccg aggtgcacaa ggtgacgctg gcgaaac
//
LOCUS       DATAJL010000297         3584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_30904,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000297 DATAJL010000000
VERSION     DATAJL010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_30904"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..155)
                     /locus_tag="VHN39_05795"
     CDS             complement(<1..155)
                     /locus_tag="VHN39_05795"
                     /EC_number="2.3.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287076.1"
                     /note="catalyzes the formation of 5-aminolevulinate from
                     succinyl-CoA and glycine; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-aminolevulinate synthase"
                     /protein_id="HEX2815883.1"
                     /translation="MDYARAFETALEKVRSEGRYRVFADLKRHRGAFPRATWTRGDGS
                     ESDVVVW"
     gene            complement(348..424)
                     /locus_tag="VHN39_05800"
     tRNA            complement(348..424)
                     /locus_tag="VHN39_05800"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(388..390),aa:Arg,seq:ccg)
     gene            complement(479..1639)
                     /gene="dnaJ"
                     /locus_tag="VHN39_05805"
     CDS             complement(479..1639)
                     /gene="dnaJ"
                     /locus_tag="VHN39_05805"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEX2815884.1"
                     /translation="MRDYYEILGVERTCDAAALKATFRKLAMEHHPDRNDGCEVSEGR
                     FKEINEAYSILSDPQKRAAYDRFGHAGVNGSGGAGPGGAPFNDVGDIFNEVFGDVFGD
                     MFGGRRGGQQRSGPARGQDLRYDLEITLEQAYASAEVEITVPAALTCETCAGSGAKPG
                     TSPTVCNACGGQGRVRATQGFFSIERACPRCGGSGQLVLDPCADCHGMGQVRRERTLS
                     VRIPAGVDDGARIRLAGEGDGGSRGGPRGDLYIFISVRPHELFERDGLDLLCTVPVPM
                     AVAALGGEIEAPCLMGGENCDGNCKMPVKVPEGAQTGKTVRLKGRGMPSLRSRDRGDL
                     VVELFVETPAKLTARQKELLREFAGLSTDAQHPKNANFAGKAKTFWDSVKGV"
     gene            complement(1827..>3584)
                     /gene="dnaK"
                     /locus_tag="VHN39_05810"
     CDS             complement(1827..>3584)
                     /gene="dnaK"
                     /locus_tag="VHN39_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEX2815885.1"
                     /translation="NTLFAIKRLIGRQMTDPMVEKDKGMVPYDIVKGPNGDAWVRAHG
                     QDYSPQQVSAFILQKMKEAAEQHLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEV
                     LRIINEPTAAALAYGLDKNDGKKIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLG
                     GEDFDLRIVDFLADEFKKENSVDLRKDKLALQRLKEEAEKAKKELSFTTQYELNLPFI
                     SMNANGPLHLNIKLSRAKLEALVEDLVAKTIGPCEQALKDAGLKKSDIDEVILVGGMT
                     RMPAVVETVKAFFGREPHTGVNPDEVVALGAAVQAGVLQGDVKDVLLLDVTPLTLGIE
                     TLGGVFTPLIERNTTIPTKRSQTFSTADDNQSAVTIRVFQGERPMAHDNKMLGQFDLV
                     GLPPAPRGVPQVEVTFDIDANGIVNVSARDKATSKEQSIRIQANGGLSDADIEAMVKE
                     AESNKADDEKRKAGVEAKNQADAVIHSTEKALAEHGDKVSEEEKGAITTALEDLKANL
                     ESEDAEAIAAKTQTLIQASMKLGEAMYKAQQSSEGPASDEDAAHAAGGHAGAEGHGGE
                     DVVDAEFEEVDGDDHKKSA"
BASE COUNT          512 a         1163 c         1232 g          677 t
ORIGIN      
        1 caccagacca ccacatcgga ttccgagccg tcgccgcgcg tccaggtggc gcgcggaaac
       61 gcgccgcgat ggcgcttcag gtcggcgaac acccggtaac ggccctcgga acggaccttc
      121 tcaagggcgg tctcaaaggc gcgggcatag tccatgggcg gtgtcctcgg ggcgatcgcg
      181 gacaggtcta gggcattggc cggccagagc tttgactcag atcatgtccc accgatggaa
      241 cgtcatgggc tgggcctcca gtgatgggac acggccatct ctttggcgcg acggtctgga
      301 ccaggccaga gccgtcgacg gacgacgctc taagttcttg aaatcgctgg cgcacccgac
      361 acgattcgaa cgtgtgacct ttgccttcgg agggcaacgc tctatccagc tgagctacgg
      421 gtgcgtttcc agcggacgct tcctctagcg gaaaggctgg gccggcgcta ggcgcccctt
      481 agacgccctt gacgctgtcc cagaaggtct tggccttgcc ggcgaagttg gcgttcttcg
      541 ggtgctgggc gtcggtggag aggccggcga actcgcgcag cagctccttc tggcgggcgg
      601 tgagcttggc cggggtctcg acgaagagct cgaccactag gtcgccgcgg tcgcgggagc
      661 gcagggacgg catgccacgg cccttaaggc gcacggtctt cccggtctgg gcgccctcgg
      721 gcaccttgac cggcatcttg cagttgccgt cgcagttttc cccgcccatc aggcagggcg
      781 cctcgatctc gccgcccagc gcggccacag ccatgggcac ggggacggtg cagagcaggt
      841 ccaggccgtc acgctcgaag agctcgtggg gccggaccga gatgaagatg tagaggtcgc
      901 cgcgcgggcc gccgcgtgag ccgccgtcgc cctcgccggc gaggcggata cgcgcgccgt
      961 cgtcgacgcc ggccgggata cgcaccgaga gcgtccgctc gcgccgcacc tggcccatgc
     1021 cgtggcagtc ggcgcaggga tccagcacca gctggccgga gccgccgcag cgggggcagg
     1081 cgcgttcgat ggagaagaag ccttgcgtcg cgcgcacgcg gccctggccg ccacaggcgt
     1141 tgcagacggt ggggctggtc ccgggcttgg cgccggagcc cgcgcaggtc tcgcaggtca
     1201 gcgccgcggg cacggtgatc tccacctcgg ctgaggcgta ggcctgctcc agcgtgatct
     1261 ccaggtcgta gcgcaggtcc tggcccctgg ccgggccact ccgttgctgg ccgccccggc
     1321 ggccgccgaa catgtcgccg aagacgtcgc cgaacacctc gttgaagatg tcgcccacgt
     1381 cgttaaacgg ggcgccgccc gggcccgcgc cccctgagcc attgacgccg gcatggccga
     1441 agcggtcgta ggccgcgcgc ttctgcggat cggagaggat cgaataggcc tcgttgatct
     1501 ccttgaagcg gccctcggac acctcgcagc cgtcgttgcg gtccggatgg tgctccatgg
     1561 cgagcttgcg gaaggtcgct ttcagcgcgg ccgcgtcgca ggtccgctcg acaccgagga
     1621 tttcgtagta gtcgcgcatc aaatcgccaa gcgtttggtg tgtggctgtt gggaaggtga
     1681 ggaaaccccc gcccggctac aaggcccaat ttcccgcagg aactggaccg agcgggcggg
     1741 ggcccctagt cgcgcagaag cggcggcgac gtccccagtg gcgatctcat cgcaaatgtc
     1801 gctttgagcc gccatggggc gggttgtcac gccgacttct tgtggtcgtc gccgtcgact
     1861 tcctcgaatt cggcatcgac cacgtcttcg ccgccatggc cctcagcgcc ggcatgaccg
     1921 ccggcggcat gggccgcgtc ctcgtctgaa gccgggcctt cgctcgactg ctgagccttg
     1981 tacatggcct cgccgagctt catcgacgcc tggatcagcg tctgggtctt ggccgcgatg
     2041 gcctcggcgt cttcggactc aaggttggcc ttgaggtcct ccagcgccgt ggtgatcgcg
     2101 cccttttcct cctcggagac cttgtcgcca tgttcggcga gggccttttc ggtggagtgg
     2161 atgaccgcgt cggcctggtt cttggcctcg acgccggcct tgcgcttctc gtcgtcggcc
     2221 ttgttggact cggcttcctt gaccatcgcc tcgatgtccg cgtccgagag gccgccgttg
     2281 gcctggatgc ggatcgactg ttccttggag gtggccttgt cccgggctga gacgttgacg
     2341 atgccgttgg cgtcgatgtc gaaggtcact tcgacctgcg gcacgccgcg cggggcgggc
     2401 gggagaccca ccagatcgaa ctggcccagc atcttattgt catgcgccat gggccgttcg
     2461 ccctggaaca cccggatggt caccgccgac tggttgtcgt cggccgtgga gaaggtctgc
     2521 gagcgcttgg tcgggatggt ggtgttgcgc tcgatcagcg gggtgaagac gccgccaagg
     2581 gtctcgatgc cgagggtcag cggggtcacg tcgagcagca gcacgtcctt gacgtcgccc
     2641 tgcagaacgc cggcctgcac cgcggcgccc agcgccacga cttcgtcggg gttcacgccg
     2701 gtgtgcggct cacggccgaa gaaggccttc acggtctcga cgaccgcggg catgcgggtc
     2761 atgccgccga ccaggatcac ctcgtcgatg tcggacttct tcaggcccgc gtccttcagc
     2821 gcctgttcgc agggaccgat ggtcttggcc accaggtctt ccaccagggc ttccagcttg
     2881 gcgcgggaga gcttgatgtt gaggtgcagg gggccgttgg cgttcatcga gatgaacggc
     2941 aggttcagct cgtactgggt ggtgaaggag agctccttct tggctttctc cgcctcttcc
     3001 ttgaggcgct gcagggccag tttgtccttc cgcaggtcga cggagttctc tttcttgaac
     3061 tcgtcagcca ggaaatcgac gatcctgagg tcgaagtcct cgccgcccag gaaggtgtcg
     3121 ccgttggtgg acttcacctc gaagacgccg tcgccgatct ccaggatcga gacgtcgaag
     3181 gttccgccgc ccaggtcgta gaccgcgatc ttcttgccgt cgttcttgtc gaggccgtag
     3241 gccagagcgg cggcggtcgg ctcgttaatg atgcgcagga cttccaggcc cgcgatcttg
     3301 ccggcgtcct tggtcgcttg gcgctgggcg tcattgaaat aggccgggac ggtgatgacc
     3361 gccttttcga ccttctcgcc gaggtgttgc tcggcggctt ccttcatctt ctgcaggatg
     3421 aaggccgaga cctgctgggg cgaatagtcc tggccgtggg cgcgcaccca ggcgtcgccg
     3481 ttcgggccct tgacgatgtc atagggcacc atgcccttgt ccttctccac catcggatcg
     3541 gtcatctggc ggccgatcag gcgcttgatg gcgaacaggg tgtt
//
LOCUS       DATAJL010000298         3371 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5140,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000298 DATAJL010000000
VERSION     DATAJL010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5140"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..845)
                     /locus_tag="VHN39_05815"
     CDS             complement(<1..845)
                     /locus_tag="VHN39_05815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815886.1"
                     /translation="MARRAALLGFIAALTAGPLSAQPASAPSGNTVEGVTVVGSKTEE
                     AKLPELVTRFVQGHSAPSRVDQLSRWPVAICPQTGGLSPPFNAYVSARVKLVATAVGA
                     PVDRHPNRNFACRTNLLIIFTTKPQELMDNVRQHHSDMLGFHYAAQAKRLATVDRPFK
                     AWYVTGTQAEGGFVEEDKEFAQMPTGEAGSRLTKRLASRLLGVLVVVDARQIVGHQIG
                     AIADEVSMLALARATELKGCSDLPTILDFLSPDCPSASDPGGLTAYDVAYLKGLYSVD
                     PEANLS"
     gene            complement(850..1500)
                     /locus_tag="VHN39_05820"
     CDS             complement(850..1500)
                     /locus_tag="VHN39_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HEX2815887.1"
                     /translation="MPAAFQYKPRFVDIRVRPPSKEEDRTAEDVNALKPGERACDHPG
                     CRLAATARAPKSRDMLNEHYWFCQPHAAEYNRNWNFFAGMSEGEVRRRQQEELFTGGR
                     PTWEMKAGRMSREAAAFSNKFKKGEGYRDPFNLFGKNGGRPMPEAEDRHLGKIERNAL
                     ADLDLDVNADGPKIRTRYTELVRRLHPDANGGDRAGENRLQRVIKAYQSLRKAGMV"
     gene            1553..1825
                     /locus_tag="VHN39_05825"
     CDS             1553..1825
                     /locus_tag="VHN39_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family protein"
                     /protein_id="HEX2815888.1"
                     /translation="MGAIFDAIQQKLEAAFQPTRLEIEDDSARHEGHSGARPGGESHF
                     NVVIESAVFAGAAKVARQRMVYRTLAEELAGPLHALSVKALAPGES"
     gene            1884..2390
                     /locus_tag="VHN39_05830"
     CDS             1884..2390
                     /locus_tag="VHN39_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX2815889.1"
                     /translation="MKTTITINGEARALDVDPRTTLLDALRETLHLTGTKKGCDHGQC
                     GACTVLVNGTRINSCLSLAVMHDGDAVTTIEGVGTVEKLAPIQTAFLTEDAFQCGYCT
                     PGQICSALGMLQEVAAGWPSQETTDLTGPIRLTDDELRERMSGNICRCSAYPQIVAAI
                     RSVSGLPA"
     gene            2387..3343
                     /locus_tag="VHN39_05835"
     CDS             2387..3343
                     /locus_tag="VHN39_05835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein subunit M"
                     /protein_id="HEX2815890.1"
                     /translation="MRPFTYERAADAASAVKSAAETPNAKFIAGGTNLLDLMKLEIEH
                     PAHLIDVSRLPIAGIEDTPAGGLRLGAMATNSHVAADARVRARYPVLTHAITAGGSGQ
                     LRNKATTGGNLLQRTRCAYFYDTTKPCNKRAPGSGCGALEGLNRNSAIFGASHACIAT
                     HASDMAVALTALGATVETLSPSGQARSFPILELHRLPGETPDVETHLIPGELITAVVL
                     PPPPQGGQVYRKVRDRASYAAGLASVAVAGGNVALGAVAHKPWRAADAEAALASGASP
                     AEAIAAELAQASNNGRNGFKINLVSRLVPAAIAEARQQGRGA"
BASE COUNT          544 a         1152 c         1138 g          537 t
ORIGIN      
        1 gagagattgg cttccggatc gactgaatag agccccttca gataggccac gtcataggcg
       61 gtgaggcccc cagggtcgga cgcggacggg cagtcagggc tcaagaagtc gagaatcgtc
      121 ggtagatcgc tgcagccttt caattcggtc gcccgcgcca gagcgagcat cgaaacctcg
      181 tccgcgatgg ctcctatctg atgcccgaca atctggcgcg catccacaac gacgaggacg
      241 ccgagcaagc ggctggcgag gcgttttgtg agccggctgc cggcctcgcc ggttggcatc
      301 tgcgcgaact ccttgtcctc ctccacgaag ccgccctcgg cttgcgtacc ggtgacgtac
      361 caagccttga aggggcgatc gaccgtcgcc agccgcttcg cctgggcggc gtagtggaag
      421 cccaacatgt ccgagtggtg ctgacggacg ttgtccatca actcctgcgg cttggtcgtg
      481 aagatgatga ggaggttggt cctgcaggcg aagtttcggt tcggatgcct gtccaccggc
      541 gcgcccactg cagtcgccac gagtttcaca cgcgccgaaa cgtaggcgtt gaagggcggc
      601 gacaggccgc cagtttgcgg gcagatcgcg accggccagc gcgaaagctg atcgacgcgg
      661 ctgggcgcgc tgtgtccttg aacgaacctc gtgaccaatt cgggaagctt cgcttcctcg
      721 gtctttgacc ccactacggt cacgccttcg actgtgttgc cggacggtgc tgaggcaggc
      781 tgagccgaaa gggggccggc ggtcagcgcg gcgataaatc cgagaagagc cgcgcgccga
      841 gccatcggcc tagaccatcc cggccttgcg cagggactgg taggccttga tcacccgctg
      901 caggcggttt tcgccggccc ggtcgccgcc gttggcgtcg gggtgcaggc ggcggaccag
      961 ctcggtgtag cgggtgcgaa tcttcggccc gtcggcgttt acgtccaggt cgaggtcagc
     1021 cagggcgttg cgctcgatct tgcccaggtg gcggtcctcg gcctccggca tcggcctgcc
     1081 gccgttcttg ccgaacaggt tgaaggggtc gcggtagccc tcgcccttct tgaacttgtt
     1141 ggagaaggcc gcggcctcgc ggctcatccg cccggccttc atctcccagg tgggtcgccc
     1201 cccggtgaac agctcctcct gctgacggcg gcggacctcg ccctcgctca tgccggcgaa
     1261 gaagttccag ttgcggttgt actcggcggc gtggggctga cagaaccagt agtgttcgtt
     1321 cagcatgtcg cgggatttgg gcgcccgcgc cgtggccgcc agccggcagc cggggtggtc
     1381 gcaggcgcgt tcgcccggct tcagcgcgtt cacgtcctcg gcggtcctgt cctcctcttt
     1441 ggagggcgga cggacacgga tgtcgacaaa ccggggcttg tattgaaacg cggcgggcat
     1501 gagccaagta tggggctgag ataatccctt tcaagaattg aagatcaggc cgatgggcgc
     1561 catatttgat gccatccaac agaaacttga ggcagccttc cagcccacgc ggctggagat
     1621 cgaggacgac tcggcccgtc acgagggcca ttccggcgcg cggccgggcg gcgagagcca
     1681 tttcaacgtt gtgatcgaat cggccgtctt cgccggggct gccaaggtcg cgcgccagcg
     1741 gatggtctat cgcacgctgg ccgaggagct cgccggcccg ttgcacgcgc tttcggtcaa
     1801 ggcgctggcg cccggcgaaa gctaggggct agactaaaac aagcgtttga agagccgccg
     1861 atggtgcggc cggggagtct ggcttgaaga ccacgatcac catcaatggc gaggcccgcg
     1921 cgctcgacgt cgatccgcgc acgacgctgc tcgatgcgct gcgcgagacc ctgcatctca
     1981 ccggcacaaa gaagggctgc gaccacggcc agtgcggggc ctgcacggtc ctggtcaacg
     2041 ggacgcggat caactcctgc ctgtccctgg cggtgatgca cgatggcgac gcggtgacca
     2101 ccatcgaggg cgtcggcacg gtcgagaagc tcgcgcccat acagacggcg ttccttaccg
     2161 aggacgcctt tcagtgcggc tactgcaccc ccggccagat ctgctcggcg ctcggcatgc
     2221 tgcaggaagt ggcggcgggc tggccgagcc aggaaaccac ggacctcacc ggccccatcc
     2281 gcctcaccga cgacgaactg cgcgagcgga tgagcggcaa catctgccgc tgctcggcct
     2341 atccgcagat cgtggcggcg attcggtccg tctcggggct gccggcatga ggcccttcac
     2401 ctacgagcgg gcggccgatg ccgcctctgc cgtgaagtcg gcggccgaga cccccaacgc
     2461 caagttcatc gccggcggca ccaacctgct cgacctgatg aagctggaga tcgagcatcc
     2521 ggcgcatctg atcgacgtca gccgcctgcc gatcgccggg atcgaggaca cgccggccgg
     2581 cggcctgcgc ctcggcgcga tggccaccaa cagccacgtg gccgccgacg cgcgcgtgcg
     2641 cgcccgctat ccggtgctga cccacgccat cacggccggc ggttcgggcc aactgcgcaa
     2701 caaggccacg accggcggca acctcttgca gcggacccgc tgcgcctatt tctacgacac
     2761 caccaagccc tgcaataagc gtgcgcccgg ctccggatgc ggggcgctgg aaggcctcaa
     2821 ccgcaactcg gcgatcttcg gcgccagcca cgcctgcatc gccacccacg cctcggacat
     2881 ggccgtggcc ctgaccgcgc tgggcgcgac agtggagacc ctgtcgcctt cgggccaggc
     2941 gcggagcttc ccgatcctgg agctgcaccg gctgcccggc gagacccccg acgtcgagac
     3001 tcacctgatc ccgggcgagc tgatcaccgc cgtcgtcctg ccgccgccgc cccagggcgg
     3061 gcaggtctac cgcaaggtcc gcgaccgggc ctcctatgcc gcgggcctcg ccagcgtcgc
     3121 ggtggcgggc ggaaacgtgg cgctgggcgc cgtcgcccac aaaccctggc gggccgccga
     3181 cgcggaggcc gcgctggcgt ccggcgcctc gcccgccgag gccatcgccg ccgagctggc
     3241 gcaggccagc aacaatggcc gcaacggctt caagatcaat cttgtcagcc gcctggtccc
     3301 ggcggccatc gccgaagcgc gtcagcaagg gaggggcgca tgagctccgt tctcgactgg
     3361 gaagcgaccc c
//
LOCUS       DATAJL010000299         6642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_66554,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000299 DATAJL010000000
VERSION     DATAJL010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6642
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66554"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..1107)
                     /locus_tag="VHN39_05840"
     CDS             complement(202..1107)
                     /locus_tag="VHN39_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815891.1"
                     /translation="MADIRFDGKVAIVTGAGGGLGRQHALELARRGAKVVVNDLGGSM
                     DGSGGGSEAANKVVDEIKALGGEAIANGSSVTDDAGVALMVKHAMDAWGRIDILIANA
                     GVLRDKTFSKMEIADFEFVLGVHLMGTVKPAKAVWEIMREQNYGRIVCTTSSSGLYGN
                     FGQSNYGAAKLGIIGFMNTLKLEGQKNNIHVNAIAPVAATRMTENLMPPAILEKLKPE
                     YVTPGVVFLCSEEAPTGCILTAGAGVFALAHIVETEGVYLGEGGLSVEEVRDNWAKIT
                     DPTGEQPYNAGGEQSGKVFRKMQGG"
     gene            1286..1639
                     /locus_tag="VHN39_05845"
     CDS             1286..1639
                     /locus_tag="VHN39_05845"
                     /inference="COORDINATES: protein motif:HMM:NF015735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX2815892.1"
                     /translation="MKFLCLVYVEPDVFRALPAAERAVIDRDSGAYDQALEARGRYIL
                     AAALQPVGTAKTVRRRGGKVLLTDGPFAETKEVLAGFIFIEAKDLDEALRIATDIPMA
                     RVGSVEVRPEMTFGD"
     gene            complement(1636..2127)
                     /locus_tag="VHN39_05850"
     CDS             complement(1636..2127)
                     /locus_tag="VHN39_05850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815893.1"
                     /translation="MSDAERVVFYTGCALAIAILAVGPASHEVVRHVIQATPLMLFCV
                     VAVRRPPVLRWLLGPVMLFWLLIAVLIWLFLLHVARVITGTFNPMEIAMTIVMGLASV
                     LGLANFARVRRRFPLLAGLGLAALSIALQVGAFAVSIQPWVAHADGHEVSDAGPRGAA
                     AAG"
     gene            complement(2145..3119)
                     /locus_tag="VHN39_05855"
     CDS             complement(2145..3119)
                     /locus_tag="VHN39_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2815894.1"
                     /translation="MLAFARNRIVWIVLVVVVALAAGGMFMSSQANAKKAAAAKVAAA
                     SAPKSPYVAIANGKADVEGGVIQVAARTSGVIREVLSQEGDDVVKGQVLARLEDEQPR
                     LQAEEAAAELRQAKAQVALLQVQIATAKREYSRLEGLIASNFVARQQVDQAQDAIHAA
                     EANLEAQNAAIGTAQAKLSMAQYNQELTIIRAPADGRIVRRYANPGAGASTLNVSNMF
                     DLEPKANRIVRAEITESALPFVIIGQTVQLSPEADPAKVITGKVLRRAAVFGARKLQS
                     DDPTERSDERVVEVVVGTDGAPFLIGQRVLVKFMRTHEQAQANLPAVG"
     gene            complement(3148..3924)
                     /locus_tag="VHN39_05860"
     CDS             complement(3148..3924)
                     /locus_tag="VHN39_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2815895.1"
                     /translation="MTPELVIRPSNRPPALVAKGLMKRFKTGRTHIEVLKSVDFEALH
                     GEVTMVMGPSGSGKSTLVASLSGLLKPDAGSVSAMGEDLWSYKPGKIDRFRLDHCGFI
                     FQGFNLFPALTALQQVEIILKYKGYSRSEARHKAATALTEVGLETRMNSRPSEMSGGE
                     KQRVAIARAIAKDPQLLFADEPTSALDGENGQIVIKLLQRAAKTFGAAVVCVTHDPRL
                     ESYADRVIHIEDGHILDDRRADPLSQPAGHSHHQPAFAQS"
     gene            complement(3921..5063)
                     /locus_tag="VHN39_05865"
     CDS             complement(3921..5063)
                     /locus_tag="VHN39_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2815896.1"
                     /translation="MSLALATLLYEWKRYSAAMVALAFSGLLILAQVGMFTGIVKAAT
                     ASIDRSRADLMILGPKNESLINSGPNGLPERVQPLIYLNPQVTEVESLDGDGARWVNT
                     PAPGKKAVTTYVNIFDIDPRPGAVTLPVDYPEATRLALLEPYAVVIDKTAQARLGTHL
                     GATAMLSGKTVHVRALLENYPNVDQPTVYMSRDTLRLLGMGPKNGKTGPLMVKIKDPT
                     QVQTVVDQLNATSHGAYKAWTRAELSKANESALMGEQIIGIFLGFSLFLGLLIGVGIT
                     SQTLRGAILASIKEFASLRALGVSMGSLSKIVLELSLWVGVSGLIATAVFTYAVYLLA
                     TNFGMPMGFPLPWVITVVILLSVISILSGIFSLGVLKKSQPADLLR"
     gene            complement(5262..6341)
                     /locus_tag="VHN39_05870"
     CDS             complement(5262..6341)
                     /locus_tag="VHN39_05870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815897.1"
                     /translation="MCALTLGGGTIGGAAQAAEPAAKAKPYALPRTSYGRPDLTGVWS
                     NASVTNLTRAPGVTKLVVDKEEAARLAKDSPFEKLAEAEEGPSKFDDNLLKDGNSDRG
                     YNTFWIDPGKSLANLNGQYRTSWIVEPASGQMPLSEGGRKLLGGYRTERQNNLFAGPE
                     FLPVSERCLIGFTGAGGPGMLNTIYNNNYQIVETPDAIVIDVEMVHDARVIPLFKDKA
                     AALAHHRPAAMAPWLGDSVGWWEGDTLVIDTVNVNAEQGRTGPIFLSDKGRVTERLTR
                     TSATQIFYQFQVDDPVYYTQSWKAEEALSARKERVFEYACHEGNYAMAGILGGARSQE
                     AQGIKPSMGPGIFGTPIPTKGKPGE"
BASE COUNT         1053 a         2097 c         2360 g         1132 t
ORIGIN      
        1 ccgaggtgtt gagcgccgag aacggcaggt agcagcaggc gaaggtgagg accgagagga
       61 gcgacagcgg ggccggagcc gcgggcttgg ccttggacaa cgcgaacctc ctcgacgccg
      121 cgcctctgtg ggcgcgatca gacgaaaaag ttacgcgcga tcacccgcgc gtgcgcaagt
      181 ggattcgccg taatggctgc ctcagccgcc ctgcatcttg cggaagacct tgccgctctg
      241 ctcgccgccg gcgttgtagg gctgttcgcc ggtgggatcg gtgatcttcg cccagttgtc
      301 gcggacttcc tcgaccgaca ggccgccttc gccgagatag accccctcgg tctcgacgat
      361 gtgggcgagc gcaaagacgc cggcgccagc ggtcaggatg cagccggtgg gcgcctcctc
      421 cgagcagagg aagaccacgc ccggggtgac gtattcgggc ttcagcttct ccaggatggc
      481 gggcggcatc aggttctcgg tcatccgggt cgccgccacc ggggcgatcg cattgacgtg
      541 gatgttgttc ttctggccct cgagcttcag cgtgttcatg aagccgatga tgccgagctt
      601 ggcggcgcca tagttcgact ggccgaagtt gccgtagagg ccggacgagg aggtggtgca
      661 gacgatgcgg ccgtagttct gctcgcgcat gatctcccag accgccttgg ccggcttcac
      721 cgtgcccatc aggtggacgc cgagcacgaa ctcaaagtcg gcgatctcca tcttggagaa
      781 ggtcttgtcg cgcagcacgc cggcgttggc gatcaggatg tcgatgcggc cccaggcgtc
      841 catggcatgc ttgaccatca gggccacgcc ggcgtcgtca gtgacagacg agccgttggc
      901 gatcgcctcg ccgcccaacg ccttgatctc gtccacgacc ttgttggccg cctcggaccc
      961 gccgccggaa ccgtccatcg agccgcccag gtcattgacc accaccttgg cgccgcgccg
     1021 ggcgagttcc agggcatgct ggcggccaag ccctccgccc gcgccggtga cgatggccac
     1081 tttgccgtcg aagcggatgt ccgccatggg aaggtccttc tcagatgtgc tgaagcgaat
     1141 tcggcgggcc ttgtgcggcg cgcacggggg cgccgtcaag ctggccatgg cgtcggtcgc
     1201 cgcgccgaag cgcgcgaaat gtcggcccgg cggcttcccg atcgacttcc aacaggtcaa
     1261 tcaaggcctg aagcgaggac gcgcgatgaa gtttctctgc cttgtctatg tcgagccgga
     1321 cgtgttccgg gccttgcccg ccgccgagcg cgcggtgatc gaccgggact ccggggccta
     1381 cgaccaggcg ctcgaagccc gcggccgcta catcctggcg gcggccctgc agccggtcgg
     1441 cacggccaag acggtgcgcc gccggggcgg caaggtgctg ctgaccgacg gtccgttcgc
     1501 cgagaccaag gaagtcctgg ccggcttcat cttcatcgag gccaaggacc tggacgaggc
     1561 cctgcggatc gccactgaca tcccaatggc ccgggtgggc agcgtcgaag tccgcccgga
     1621 gatgaccttc ggcgactagc ccgcggccgc cgcgccgcga gggccagcgt cggacacctc
     1681 atgcccgtcc gcatgggcga cccagggctg aatgctgacc gcgaaggccc cgacctgcag
     1741 ggcgatcgac agcgcggcga gccccagccc cgccagaagc ggaaagcgcc ggcgcacgcg
     1801 ggcgaagttc gcgaggccaa ggaccgaggc gaggcccatg acgatggtca tggcgatctc
     1861 catcggattg aaggtcccgg tgatcaccct tgcgacgtgc agcaggaaca gccagatcag
     1921 gacggcgatc aacagccaga acagcatgac agggcctagg agccagcgca gcacgggcgg
     1981 ccgacggacg gcgacgacgc agaacaacat caggggcgtc gcctggataa cgtgcctcac
     2041 gacctcatgc gaggcggggc ccacggcgag gatcgcgatc gccagcgcgc agccggtgta
     2101 gaaaacgacc cgctcggcgt cggacatcga ccgcatccgg cggatcagcc caccgccggc
     2161 aggttggcct gggcctgctc gtgggtgcgc atgaacttca caagcacacg ctggccgatc
     2221 aggaaggggg cgccgtcggt gccgaccacg acctcgacca cgcgctcgtc gctgcgctcg
     2281 gtgggatcgt ccgactgcag cttgcgggcg ccgaagacgg cggcgcggcg cagcaccttg
     2341 ccggtgatga ccttggcggg gtcggcttcc ggcgagagct gcacggtctg gccgatgatc
     2401 acaaagggaa gggcgctctc ggtgatttcg gcgcggacga tgcggttggc cttgggctcc
     2461 aggtcgaaca tgttggagac gttcagcgtc gaggcgccgg cgcctggatt ggcgtagcgg
     2521 cgcacgatgc ggccgtcagc cggggcgcgg atgatggtca gttcctgatt gtactgcgcc
     2581 atactgagct tggcctgggc cgttccaatg gcggcgttct gggcctccag gttcgcctcg
     2641 gcggcatgga tggcgtcctg agcctgatcg acctgctggc gcgcgacgaa attggaggcg
     2701 atcaggccct ccagacggga gtattcgcgc ttcgcggtgg cgatctgcac ctgcagcaag
     2761 gcgacctgag ccttggcctg gcggagttcg gcggcggctt cttcggcctg caaccgaggt
     2821 tgttcgtcct ccaggcgggc caggacctga cccttgacga cgtcgtcgcc ttcctgggac
     2881 agcacctcgc ggatgacgcc ggaggttcgc gccgcgacct ggatcacgcc gccctccacg
     2941 tcggccttgc cgttggcgat ggccacatag gggctcttgg gggcgctggc ggcggcgacc
     3001 ttcgcggccg cggccttctt ggcgttggcc tggctggaca tgaacatgcc gccggcggcg
     3061 agcgccacga cgacgacgag cacgatccag acgatacggt tgcgggcgaa ggcaagcatg
     3121 actttggtcc ttaggtcccc acttcgccta ggattgggca aaggcgggct ggtggtggct
     3181 gtggccggcc ggctgcgaca gcgggtcggc gcggcggtcg tcgaggatgt ggccatcctc
     3241 gatgtggatg acgcggtcgg cgtaggattc gagccggggg tcgtgggtca cgcagacgac
     3301 ggcggccccg aacgtcttgg cggcgcgctg caggagcttg atcacgatct ggccgttctc
     3361 gccgtcgagc gcgctggtgg gctcgtcggc gaacaggagc tgcgggtcct tggcgatggc
     3421 gcgcgcgatg gccacccgct gtttctcgcc gccggacatc tccgaaggcc gcgagttcat
     3481 gcgcgtctcg aggccgacct cggtcagggc ggtggcggcc ttgtggcgcg cctccgagcg
     3541 tgagtagccc ttgtacttca ggatgatctc gacctgctgc agggcggtca acgccgggaa
     3601 caggttgaag ccctggaaga tgaaaccgca gtggtcgagc cggaagcggt cgatcttgcc
     3661 gggcttgtag ctccagaggt cctcgcccat ggcgctgacc gaaccggcgt cgggcttgag
     3721 caggccggag agggaggcca ccagcgtcga cttgccggac cccgaggggc ccatgaccat
     3781 ggtcacctca ccatgcaggg cctcgaagtc gaccgacttc aggacttcga tgtgggtgcg
     3841 tccggtcttg aagcgcttca tcaggccctt cgcgacaagc gccggcgggc ggttgctggg
     3901 gcggatcacg agttcagggg tcatcgcagc aggtccgcgg gctggctttt cttcaggacg
     3961 cccagggaga agattcccga gaggatggag atgacggaga gcaggatcac caccgtgatc
     4021 acccagggca gggggaatcc catgggcatg ccgaagttgg tggccagcag gtagacggcg
     4081 taggtgaaga ccgccgtggc gatcaggccc gacacgccga cccataggga gagctccagc
     4141 acgatcttgc tcagcgaacc catggagaca ccaagcgcgc gcaggctggc gaactccttg
     4201 atgctggcca ggatcgctcc gcgcagggtc tgggaggtga tgccgacccc gatcaggagg
     4261 cccaggaaca gcgagaagcc caggaagatc ccgatgatct gctcgcccat cagggcgctc
     4321 tcattggcct tggagagctc ggcccgggtc caggccttgt aggccccgtg gctggtcgcg
     4381 ttcagctggt cgacgacggt ctggacctgc gtcggatctt tgatcttcac catcaggggt
     4441 ccggtcttgc cgttcttcgg acccatgccg agcagacgca gggtgtcgcg cgacatgtag
     4501 accgtgggct ggtcgacgtt ggggtagttc tccagcaggg cgcggacgtg aacggtcttg
     4561 ccgctgagca tcgcggtggc gcccaggtgg gtgccaaggc gcgcttgggc ggtcttgtcg
     4621 atgaccacgg cgtagggctc cagaagcgcc aggcgcgtgg cctccggata gtcgaccggg
     4681 agcgtgaccg cgccggggcg cggatcgatg tcgaagatgt tgacgtaggt cgtgaccgcc
     4741 ttcttgccgg gcgcaggcgt gttgacccag cgtgcgccgt cgccatcgag gctctcgacc
     4801 tcggtcacct gcgggttgag gtagatcagc ggctggaccc gttcgggaag gccgttgggg
     4861 ccggagttga tcaggctctc gttcttgggg cccaggatca tcaggtccgc gcggctgcgg
     4921 tcgatggagg cggtggcggc cttcacgatg ccggtgaaca tgcccacctg ggccaggatc
     4981 aagaggcccg aaaacgcgag cgccaccatg gcggcgctat agcgcttcca ctcatagagc
     5041 agtgtggcca gagccaacga cattgcgacg cctcccgttc ggagcgcgag atgtcgtgct
     5101 ggagccgcaa gagccagtta aatccccgta acaccgaggt aacaggcagg ccgacggcgc
     5161 cgcgtgacgc gctcaattac gaagagacgc gaggaggatg tctcagatgc ggcgggtggg
     5221 attaaacctt cgtaatccag ccgcctgtgg cgacctgtgg cctattcgcc cggtttgccc
     5281 ttggtgggaa tcggcgtgcc gaagatgccg gggcccatgg acggcttgat gccctgggcc
     5341 tcctgcgagc gggcgccgcc gaggattccg gccatggcgt agttgccctc atggcaggcg
     5401 tattcgaata cccgctcctt gcgcgcgctg agggcttcct cggccttcca cgactgggtg
     5461 tagtagaccg ggtcatcgac ctggaactgg taaaagatct gggtcgccga ggtgcgggtg
     5521 agccgctcgg tgacgcggcc cttgtcggag aggaagatcg gcccggtgcg gccttgctcg
     5581 gcgttcacgt tgacggtgtc gatcaccaga gtgtcgcctt cccaccagcc gacgctgtcg
     5641 ccgagccagg gcgccatggc ggccgggcgg tgatgggcca gggcggccgc cttgtccttg
     5701 aacagcggaa tgacccgggc gtcgtggacc atctccacgt cgatcacgat ggcgtccggc
     5761 gtctccacga tctgatagtt gttgttgtag atcgtgttga gcatccctgg cccgccggcg
     5821 ccggtgaagc cgatcaggca gcgctcggac accggcagaa attccgggcc ggcaaagagg
     5881 ttgttctgcc gctcggtgcg gtacccgccc agcagctttc gaccgccttc ggagagcggc
     5941 atctggcctg aggccggctc gacgatccag gaggtgcggt attggccatt tagattggcc
     6001 aggctcttgc ccgggtcgat ccagaaggtg ttgtagccgc ggtcgctgtt gccgtccttg
     6061 agcaggttgt cgtcgaactt cgacgggcct tcctcggctt ccgccagctt ctcgaagggg
     6121 ctgtccttgg cgagcctggc ggcctcctcc ttgtcgacca ccagcttggt gacgcccggc
     6181 gcgcgggtca ggttggtcac cgaggcgttg gaccagacgc cggtcaggtc cggccgtccg
     6241 tagctggtgc ggggcagggc atagggcttg gccttggcgg cgggctcggc cgcctgggcc
     6301 gcgccgccga tcgtcccccc acctagggtt agggcacaca ccaacaccgc agcgatcgaa
     6361 acgccgttcc tcatggctca gctccctttg cgggcgctcg tgcgcagacg ccggcgcccg
     6421 tccgtttctg cgcgcgaagc taacagagtc cggatgatcc cgcaggctgc aatcttgcgc
     6481 gcgccacgca tctgcccctc tatcgccgag ggggccgccg gaatcgcggc gtggtgaggt
     6541 tgtccggaat gttccgtctc gagaatgcgc agagcctggt gggcattgcg gtggcaatcg
     6601 gtatctgttg ggcgctttcc gagaaccggc ggcggttccc gt
//
LOCUS       DATAJL010000300         2436 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_66561,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000300 DATAJL010000000
VERSION     DATAJL010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2436)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2436)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66561"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..630)
                     /locus_tag="VHN39_05875"
     CDS             complement(<1..630)
                     /locus_tag="VHN39_05875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase domain-containing protein"
                     /protein_id="HEX2815898.1"
                     /translation="MTRRPVPFDIGPVHFIGIGGIGMSGIAEIMLRIGYAVQGSDAKA
                     SANTERLEKLGAKIFIGHDASHVDGASAVVYSTAVKADNPEMVAGRDRRLPLVRRAEM
                     LAELMRLQFSVAVGGTHGKTTTTSMVACLLDAGGLDPTVVNGGIINAYGTNAKVGAGD
                     WIVVEADESDGDGGQSVHRIVVPSHGQAKVVVADGFSVMRVDHHVETAAV"
     gene            complement(681..1931)
                     /locus_tag="VHN39_05880"
     CDS             complement(681..1931)
                     /locus_tag="VHN39_05880"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX2815899.1"
                     /translation="MRHLPAAILIALGLASPAAAQAPLAAWVEMTGAGAQVRAVSEGD
                     ACPALSVDGRSHAMTLRAGPSEAFANRICEAPLPHGARRASVAGAPLPLSKARPQRIV
                     ILGDSGCRLKGKVVQDCNDPVAGWPFAKVAALATARRPDLVIHVGDYYYRETACKDGD
                     RACAGSPFGDRWPTWKAELFDPAAGLLKAAPWVFARGNHEDCARGGKGWFRLLDADPK
                     ARTCPAQSDTFAVDIGGLRLAVIDTADGDDNTKDSAEIAALVARLKAIPAGTTPVWLV
                     THRPIWIVKRQDTVLSDDGGNANEREAVRAQGLGRVELVVVGHKHNFTSLDFGAGRPG
                     QLLVGTGGDVLEKGETPPPVIGPVVVDGLQAQAFTMGRFGYFVFDRKGGAGGHDWVGA
                     FHDLTDAVIARCTLHADRLSCIEA"
     gene            complement(2008..>2436)
                     /locus_tag="VHN39_05885"
     CDS             complement(2008..>2436)
                     /locus_tag="VHN39_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2815900.1"
                     /translation="QQTRAESMEIARRVYANAVVDAEIAPFFRDMAGRLAAAHLVIGR
                     SGAGSVCEFAVAGKPSILVPLAVALDDDQGQNAKFLADVGAAEVARESQLTVASLASA
                     LEKLLTNPARLARMAAAARSVAIPDAAERLADLVEETARG"
BASE COUNT          359 a          869 c          843 g          365 t
ORIGIN      
        1 gacggctgcc gtttcgacgt ggtgatccac cctcatgacg gagaagccat ccgctacgac
       61 gaccttcgcc tgcccatggc tgggcaccac aatgcgatga acgctctggc cgccatcgcc
      121 gtcgctctcg tcggcctcga ccacgatcca gtcgcccgcg cccaccttcg cattggtgcc
      181 ataggcgttg atgatcccgc cgttgaccac cgtggggtcg aggccgccgg cgtccagcag
      241 gcaggccacc atggaggtcg tcgtggtctt gccgtgcgtg ccgcccacgg cgaccgagaa
      301 ctgcaggcgc atcagttcgg cgagcatctc ggcgcggcgg accagcggca ggcgccggtc
      361 gcgcccggcg accatctccg gattgtcggc cttgaccgcc gtcgaataga ccaccgcgct
      421 cgcaccatcc acgtggctgg cgtcatggcc gatgaagatc ttggctccca gcttctcgag
      481 ccgctcggtg ttggcgctgg ccttggcgtc ggagccctgc accgcatagc cgatgcgcag
      541 catgatctcg gcgatgccgc tcatgccgat gccgccgatg ccgatgaaat gcacggggcc
      601 gatgtcgaaa ggcacggggc gacgggtcat ggctaggtgc tagcgcattg ccgcgacggg
      661 ggaaatatcc gcgacccgcg tcaggcctcg atgcaactca gccggtccgc atgcagggtg
      721 cagcgcgcga tcaccgcgtc ggtgaggtcg tggaaggcgc caacccagtc gtgaccgccg
      781 gcaccgcctt tgcggtcaaa cacgaaatag ccgaagcgac ccatggtgaa ggcttgggcc
      841 tgcaagccat cgacgaccac ggggccaatg actggcggcg gggtctcgcc cttctccagg
      901 acatcgccgc ccgtgcccac cagcagctgt cccggccgcc cggcgccgaa gtccaggctg
      961 gtgaaattgt gcttgtggcc aaccaccacc agctccaccc ggccgaggcc ttgggcgcgc
     1021 acggcctcgc gctcgttggc gttgccgccg tcgtcgctca gcaccgtgtc ctgccgcttc
     1081 acgatccaga tcggccggtg ggtcaccagc cagacgggcg tggtccccgc cgggatcgcc
     1141 tttagccgcg cgacgagggc ggcaatctcg gcggaatctt tggtgttgtc gtctccatcg
     1201 gcggtgtcga tcacggcgag ccgcagcccc ccgatgtcga ccgcgaaggt gtcgctctgc
     1261 gccgggcagg tgcgcgcctt ggggtcggcg tcgagcaggc ggaaccagcc cttgccgccc
     1321 cttgcgcaat cttcgtgatt gccgcgggcg aaaacccagg gggcggcctt gagtaggccc
     1381 gccgccgggt cgaacagctc ggctttccag gtcggccacc ggtcgccgaa ggggctgccg
     1441 gcgcaggccc ggtcgccgtc cttgcacgct gtctcgcggt agtagtagtc gcccacatgg
     1501 attaccaggt cggggcgccg cgccgtggcc agggcggcca ccttggcgaa gggccagccg
     1561 gcgacggggt cgttgcagtc ctgtacgacc ttgcccttca gccggcagcc gctgtcaccg
     1621 aggatcacga tgcgctgagg acgcgccttg gagagtggca gcggtgcgcc ggccaccgaa
     1681 gcgcgcctgg cgccgtgcgg cagcggggcc tcgcagatac gattggcgaa ggcctcagaa
     1741 gggccggcgc gcagagtcat cgcatgggac ctgccatcga cgctcagggc ggggcaagcg
     1801 tcgccctcgg agaccgcccg gacctgggcg cccgcgccgg tcatctccac ccaggccgcc
     1861 aacggggcct gcgccgccgc cgggctcgcc agaccgagcg cgatcaggat cgccgccggc
     1921 agatgccgca tgatgtgtct ccccgacgca ggacccgagc gctcaatcac ctcatagccc
     1981 ggcttcgcga caatccgcca cgacggctta gccccgcgcg gtttcctcga ccagatcggc
     2041 caagcgctcg gcggcgtcgg ggatggcgac cgagcgggcg gcggcggcca tgcgggcgag
     2101 ccgcgccgga ttggtcagca gcttttccag cgcgctggcg aggctggcca cggtgagctg
     2161 gctctcgcgg gccacctcgg ccgcgccgac gtcggcgagg aacttggcgt tctggccctg
     2221 gtcgtcgtcc agcgccacgg ccaggggcac caggatcgag ggcttgccgg ccaccgcgaa
     2281 ctcgcagacc gaccccgcgc cggacctgcc gatcaccaga tgggcggcgg cgagccggcc
     2341 ggccatgtcg cggaaaaacg gggcgatctc ggcgtccacc acggcgttcg cgtagacgcg
     2401 ccgcgcgatc tccatggatt ccgcccgggt ctgctg
//
LOCUS       DATAJL010000301         3614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_31019,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000301 DATAJL010000000
VERSION     DATAJL010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3614
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31019"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..546
                     /locus_tag="VHN39_05890"
     CDS             <1..546
                     /locus_tag="VHN39_05890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815901.1"
                     /translation="AERESRKAVELEPVSLAARGALLQVLLTARRYRQAITAANEALA
                     LSPLSSEGWYAKGWAYVLSGDVASGVEALLKGLTLWGIDQVQIERLRALHAEGGFPAL
                     CAGGADLFETQKVMFTPRLTDVAFLRAGAGQPDQAFAALQAAADLDDPYLVFLPWLPY
                     CDPLRDDPRWPRLLERVRLVR"
     gene            641..1525
                     /locus_tag="VHN39_05895"
     CDS             641..1525
                     /locus_tag="VHN39_05895"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEX2815902.1"
                     /translation="MTTAFLKTGLKAFGLAAAISVGIVAYGQGLWQPLVMANLRYHPE
                     IPWAAPLMAVLLAGLLTYLSGKGWPKGTSETRKRLLRWNAMPLRTFFLAVGAGMLGLV
                     AFGGLWVTAADLIHIPAGIQPKMTGIPLGTAISFIVVAALAAPLSEEAAFRGYAMGIL
                     QKAWGHAPAAIVGSSILFAAVHFTQGLDPTKLSLYFAAGLLFATIGYLTNSLYAVMVV
                     HSLGDVLGFTVLWPHDQTHHAMGFHDPMFAPALIALAVFTPLSILAFRKLAAVAKDLR
                     TPAAAIPARALGALPIAA"
     gene            complement(1598..2728)
                     /locus_tag="VHN39_05900"
     CDS             complement(1598..2728)
                     /locus_tag="VHN39_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX2815903.1"
                     /translation="MAADGNITKDLIYDAVAPDDFESMLELDRYNARSTAFDKIISAT
                     HDHFWDPLDKKYIDFDAPFDMENTMILPEKMIGALQLDYVNAILTDPKERVRFANAQT
                     LRTFSSILHGEQGALNLSASLCHVLKDQGAQEYAANQTREEARHVTAFAKYIKARWGR
                     PVECGPILKDLLVEIIHAPEVYKKIIGMQMLVEGLAMGAFATVFNETNDPLAKKLTQL
                     VMTDEAFHHKFGKIWADRTIPHLSEAEHEVIEMWAAHCFQTLLFNLVAPTQNVGLYEE
                     FGLDPQKVIEGMAEIVNDETRREEMKEQTNIFRVLVKTLVNAGIITDRTKAFYAVYVD
                     IDELKGEGDKMVGDDIAEEGIKYLQEINFKDRALAKILIAAE"
     gene            complement(2982..>3614)
                     /locus_tag="VHN39_05905"
     CDS             complement(2982..>3614)
                     /locus_tag="VHN39_05905"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815904.1"
                     /translation="VYGTADFGASLARALNIGVNAGFATSEVSFALFNGETFGQSYTA
                     TAFDGTTAVASQTLVNIAANFNAGYGLIDLTSANITSVSITPLGAPSVWDFLIDTVAF
                     NQTVQQGVTNLPPPNSPPPSVFVPPPPVLVTVDDGHHHGHEVELELDYGDSIDGRGTL
                     NSLNNIPPGPTPPILSPVPEPAAWAMMLVGFGGIGALLRRRRGQTAPVAA"
BASE COUNT          538 a         1212 c         1191 g          673 t
ORIGIN      
        1 gccgagcgcg aaagccgcaa ggcggtggag cttgagccgg tgtcgcttgc ggcgcgcggc
       61 gccctgctgc aggtcttgct caccgcgcgg cgctaccgcc aggcgatcac cgcggccaac
      121 gaggccctgg cgctcagccc gctgtccagc gagggctggt acgccaaggg ctgggcctat
      181 gtgctgtcgg gcgacgtggc gtccggcgtc gaggccctgc tcaaggggtt gacgctctgg
      241 ggcatcgacc aggtccagat cgagcgcctg cgggctctgc atgccgaagg cggcttccca
      301 gccctttgcg ccggcggcgc ggacctcttc gagacccaga aggtgatgtt cacccccagg
      361 ctcaccgacg tcgccttcct gcgcgccggc gcgggccagc cggaccaggc cttcgccgcc
      421 ctccaggccg ccgccgacct cgacgacccc tacctcgtct ttctgccctg gctgccctac
      481 tgcgaccccc tgcgcgacga cccgcgctgg ccgcgcctcc tggagcgcgt gcggctggtc
      541 cgctgaccgc aaggaaatcc caaggtttcg gtcaggtcgc cgcaaacacc ttgcgggcca
      601 tttcgcccat cctggcttca tcgaaaccag ggaggttccc atgaccaccg ctttcctcaa
      661 gaccggcctg aaggccttcg gactggccgc cgccatcagc gtcggcatcg tcgcctacgg
      721 ccaggggctt tggcagccgc tggtgatggc caatctgcgc tatcacccgg aaatcccctg
      781 ggccgcgccg ctcatggccg tgctgctggc gggcctgctg acctacctgt ccggcaaggg
      841 ctggcccaag ggcacgagcg aaacccgcaa gcgcctgctg cgctggaacg ccatgccgct
      901 ccggactttc ttcctggccg tcggcgcggg aatgctcggc ctggtcgctt tcgggggcct
      961 gtgggtcacc gccgccgatc tgatccacat ccccgcgggc atccagccga agatgaccgg
     1021 catccccctg gggacggcga tctccttcat cgtggtcgcc gcgctggccg ccccgctcag
     1081 cgaggaagcc gccttccggg gctacgccat gggcatcctg cagaaggcct ggggccatgc
     1141 gccggccgcc atcgtgggct cctcgattct gttcgccgcc gtgcacttca ctcaaggact
     1201 cgacccgacc aagctcagcc tctacttcgc cgccggcctc ctgttcgcca ccatcggcta
     1261 cctgaccaac tcgctctacg cggtgatggt ggtccacagc ctgggcgacg tgctgggctt
     1321 cacggtcctc tggccccacg atcagaccca ccacgccatg ggcttccacg acccgatgtt
     1381 cgcgccggcg ctgatcgcgc tcgccgtatt caccccgctc tcgatcctgg ctttccgcaa
     1441 gctcgcggcg gtcgccaagg acctcagaac cccggccgcg gcgatccccg cccgggccct
     1501 cggcgccctg ccgatcgcgg cgtgacgcct gagcccagac acgaaaacgc ccgccggagt
     1561 tgtctccggc gggcgtccgt ttgcgtgaag gcagaaccta ctccgcggcg atcagaatct
     1621 tcgcgagcgc cctgtccttg aagttgattt cctggaggta cttgatgccc tcttcggcga
     1681 tgtcgtcgcc gaccatcttg tcgccttcgc ccttcagctc gtcgatgtcg acgtagacgg
     1741 cgtagaaggc cttggtgcgg tcggtgatga tgccggcgtt gaccagggtc ttcaccagca
     1801 cgcggaatat gttggtctgt tccttcatct cctcgcggcg ggtctcgtcg ttgacgatct
     1861 ccgccatgcc ttcgatgacc ttctgcggat cgaggccgaa ttcctcgtag aggccgacgt
     1921 tctgggttgg cgccaccagg ttgaagagca gcgtctggaa gcagtgcgcc gcccacatct
     1981 cgatgacctc gtgctcggcc tccgacaggt gcgggatcgt gcggtcggcc cagatcttcc
     2041 cgaacttgtg gtggaaggcc tcgtcggtca tcaccagctg ggtcagcttc ttggccaacg
     2101 ggtcgttggt ctcgttgaac acggtggcga aggcgcccat ggccaggccc tccaccagca
     2161 tctgcatgcc gatgatcttt ttgtagacct ccggagcatg gatgatctcg accagcaggt
     2221 ccttcaggat cggaccgcat tccaccggtc ggccccaacg agccttgatg tacttggcga
     2281 aggcggtgac gtggcgggcc tcttcgcggg tctgattggc ggcgtattcc tgcgcccctt
     2341 gatccttcag cacatggcag aggctggccg agagattcag cgcgccctgc tcgccgtgca
     2401 ggatcgagga gaaggtccga agcgtctggg cgttggcgaa ccggacgcgc tccttcgggt
     2461 cggtgaggat ggcgttcaca tagtcgagct gcagcgcccc gatcatcttc tcggggagga
     2521 tcatggtgtt ttccatgtcg aacggcgcgt cgaagtcgat gtacttcttg tcgagcggat
     2581 cccagaagtg gtcgtgggtg gccgagatga tcttgtcgaa ggcggtcgag cgggcgttgt
     2641 agcggtccag ctccagcatg gactcgaagt cgtccggcgc aacggcgtcg tagatcaggt
     2701 ccttggtgat gttgccgtcg gcggccatgg cttcgctccc tatttgtcgg cgtcggggtt
     2761 cagggcgcgc gcgccgcgcc ccgcctgcat acaggtttga cccaaccatc taaacattga
     2821 tcagtcaata aagtgacggg ggcgtcacct ttgttttccc ccttcgcgcc ggccgggcgg
     2881 gcgggtcgat ttgcgctgtc gcaagaagag gtcgagccag ccaaaagccc cggcgctctt
     2941 gcgaggccgg ggctcagatc gcgtgacttg cgggatgtcg ctcaggcggc gacgggcgcc
     3001 gtctggccac gtcgccggcg caggagcgcg ccaatgccgc cgaagccgac cagcatcatc
     3061 gcccaggccg cgggctcagg gaccggcgag aggatcggcg gcgtggggcc cggagggatg
     3121 ttgttgaggc tgttgagcgt gcccctgccg tcgatgctgt cgccgtagtc cagttccagc
     3181 tccacctcat ggccgtggtg atgaccgtcg tcgaccgtca ccaggaccgg cggcggcggg
     3241 acgaagacgc tgggcggagg actgttgggc ggcgggagat tggtgacacc ctgctggacc
     3301 gtctggttga aggccacggt atcgatcagg aaatcccaga ccgacggggc gccgagcggc
     3361 gtgatcgaca cgctggtgat gttggcggac gtcaggtcga tgaggccgta gccggcgttg
     3421 aagttggcgg cgatgttgac cagcgtctgc gaggcgacgg ccgtcgtccc gtcaaacgcc
     3481 gtggcggtgt aggactgacc gaaggtctcg ccattgaaga gcgcgaagct cacctcgctg
     3541 gtcgcaaagc ctgcattgac accgatgttg agcgccctgg cgagactggc cccgaaatcg
     3601 gccgtgccat agac
//
LOCUS       DATAJL010000302         2497 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_18160,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000302 DATAJL010000000
VERSION     DATAJL010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18160"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..1053
                     /locus_tag="VHN39_05910"
     CDS             274..1053
                     /locus_tag="VHN39_05910"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2815905.1"
                     /translation="MSDPNQLAGKVAVVTGAGGAIGAATALLMLARGASVVAVDRTAA
                     ALDQLERDAGPGASLHLAPADVTSEASVAGYVQEALKAFGRIDVFFNNAGVEGQVSPI
                     ADYPLADFQAVVNVNIIGVFLGLKHVIPAMAAQGGGSIINTSSVAGLMGSPGLSAYVA
                     SKHAVIGLTRTAAIECGPKNIRVNSVNPGPIDSRMMRSIETQASPGAPAAVHDQFAQR
                     IPLGRYGTCDEVARMVAFLASDEAKYLTGGVFVVDGGMTTS"
     gene            complement(1058..1279)
                     /locus_tag="VHN39_05915"
     CDS             complement(1058..1279)
                     /locus_tag="VHN39_05915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815906.1"
                     /translation="MSPPETETPPAKVRGFLRGLGEVAEFLRESAIAVFEVALGRWPK
                     PYGGSPRKPKAPNKGMGLIEKIAPFPTDD"
     gene            complement(1352..1891)
                     /locus_tag="VHN39_05920"
     CDS             complement(1352..1891)
                     /locus_tag="VHN39_05920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516953.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF882 domain-containing protein"
                     /protein_id="HEX2815907.1"
                     /translation="MGLHRRRLLQYGLGLAGSAAFGTGALAAAEARSIAFTNLHTGES
                     LNATYWEAGAYVPAALAALNHLLRDHRSGEVHAIAPGLFDLIASLRSRLETTATVQVI
                     SGYRSPATNAAMHAHSEGVASHSLHMLGQATDLRIAGVDLGHLRDAAWSLQGGGVGFY
                     PQSQFVHVDVGRVRNWKGA"
     gene            complement(1917..>2497)
                     /locus_tag="VHN39_05925"
     CDS             complement(1917..>2497)
                     /locus_tag="VHN39_05925"
                     /inference="COORDINATES: protein motif:HMM:NF015679.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HEX2815908.1"
                     /translation="LESVVFNPPWNVPASIAAAELLPHERADPGYLARNDFVVVGGAL
                     RQRPGPRNSLGQLKFDFPSPFGVYLHDTPARAIFALPERWRSHGCVRLEKPRELAGAL
                     LDPQVWTRDGIDAAIEAGETRRVALSAPVPLYVLYWTVVIAPDGAPDFRGDAYGWDTK
                     LTHALARDASGGGAMPQGDSGCSAANWPQPVL"
BASE COUNT          390 a          864 c          878 g          365 t
ORIGIN      
        1 ctcgcgcaga ccgcggccaa gggccgtgtc gcggcccgac gggctgcgcc cttcggcggc
       61 ttgggggttc atcatgggct cagcctctgg tggatgggac gcgacaatca accgttcctg
      121 cacctccatc aacgccgcgc ccttgagcca ggtcaaaggg atccgacctt tgacccagcg
      181 caaggcgccg atcgcagcgc cccgccaggg tcgcccaacc ctggcgcccc cacaccctgg
      241 cgccacaggc cctcgcggcg aaggagcccg tccatgtccg accccaacca actcgccggc
      301 aaggtggcgg tcgtcaccgg cgccggcggc gccatcgggg ccgccacggc gttgctgatg
      361 ctggcgcgcg gcgcctcggt ggtcgcggtg gaccgcaccg ccgccgcgct cgaccagctg
      421 gagcgcgacg ccggccccgg cgccagcctg catctggccc ccgcggacgt cacctccgag
      481 gcgtcggtcg ccggctatgt ccaggaggct ctcaaggctt tcggccggat cgacgtattc
      541 ttcaacaacg ccggcgtcga gggccaggtg tcgcccatcg ccgactaccc gctggccgac
      601 ttccaggccg tcgtgaacgt caacatcatc ggcgtcttcc tcgggttgaa gcacgtgatc
      661 cccgccatgg cggcccaggg tggcggcagc atcatcaaca cctccagcgt tgcgggcctc
      721 atggggtcgc ccggcctcag cgcctatgtc gccagcaagc acgcggtcat cggcttgacc
      781 cggacggcgg cgatcgagtg cgggccgaag aacatccgcg tgaacagcgt caatcccggc
      841 cccatcgaca gccgcatgat gcgctcgatc gagacccagg cctcgcccgg ggcgccggcg
      901 gccgtgcacg accagttcgc gcagagaatc ccgctgggcc gctacgggac ctgcgacgag
      961 gtcgcccgga tggtggcctt cctggccagc gacgaggcga aatacctcac cggtggcgtc
     1021 ttcgtcgtgg acggggggat gacgacgagc tgagcgctca gtcgtcggtg gggaagggcg
     1081 cgatcttctc gatcaggccc atgcctttgt taggagcctt gggcttgcgc gggctgccgc
     1141 cgtagggctt gggccaccgg ccgagcgcga cttcgaagac ggcgatggcg ctctccctca
     1201 agaattccgc gacctcgccc aagccgcgaa ggaacccgcg gaccttggcc ggcggggttt
     1261 cggtttctgg cggcgacatc ttgaaacctc ctcggatggc gcgatcctgg cgtccgccgt
     1321 tcggccccaa ccttgatcgg cgtcaaacgc ctcaggcgcc tttccagttg cgcacgcgcc
     1381 cgacatcaac atgcacgaac tgcgactgcg ggtagaagcc gacgccgccg ccctgcagcg
     1441 accaggccgc gtcgcgcaga tggccaagat cgacgccggc gatgcgcagg tcggtcgcct
     1501 gacccagcat gtgcaggctg tggctggcga cgccttcgct gtgcgcgtgc atggccgcat
     1561 tggtggcggg cgatcggtaa ccggagatca cctgcacggt ggccgtcgtc tcgagccggc
     1621 tgcgaaggct ggcgatcaga tcgaacaggc cgggcgcgat ggcgtggacc tcaccggagc
     1681 gatggtcgcg cagcaggtga ttgagcgccg ccagggcggc gggaacatag gcgccggctt
     1741 cccaataggt ggcgttgagg ctctcgccgg tgtgcaggtt ggtgaaggcg atgctgcggg
     1801 cctcggcggc ggcgagcgcg cccgtgccga aggcggcgga gccggcgaga cccagtccgt
     1861 attgcagcag tcgccggcga tgaaggccca agggacgtcc tccgaaagga cgtcccttat
     1921 agcaccggct ggggccaatt tgcggcgctg cacccactgt cgccttgcgg catggcgccg
     1981 cccccggagg cgtccctggc gagggcatgg gtcagctttg tgtcccagcc ataggcatcg
     2041 ccacggaaat cgggcgcgcc gtcgggggcg atgaccacgg tccagtagag cacatagagc
     2101 gggaccggcg cggacagcgc gacgcggcgg gtttcaccgg cttcgatcgc cgcatcgatc
     2161 ccgtcccgcg tccagacctg cggatccagg agcgcgccgg ccagctcgcg cggcttttca
     2221 aggcggacgc agccgtggct gcgccagcgc tcgggcaacg cgaagatcgc ccgggcgggg
     2281 gtgtcatgga gatagacccc aaagggactg gggaagtcga acttcagctg gccgagcgaa
     2341 ttgcgggggc cgggccgctg ccgcaaggcg cctccgacga ccacgaagtc gttgcgggcc
     2401 agatagccgg gatcggcgcg ctcgtgcggc agcagttccg cggcggcgat cgacgccggc
     2461 acgttccacg gcggattgaa gacaacgctc tccagac
//
LOCUS       DATAJL010000303         1976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92500,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000303 DATAJL010000000
VERSION     DATAJL010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92500"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1374)
                     /locus_tag="VHN39_05930"
     CDS             complement(<1..1374)
                     /locus_tag="VHN39_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2815909.1"
                     /translation="MADAAPTPQELPRPKRPRFFWPGGLSARLLTLTVLFVAGGGALA
                     FPPALASFERQWLLERVRGAETVSRFADIAKSSVNGPQREQLLRGAGVEWVAVQTKDE
                     GLHLVLQGKRSAQTPYFVDLRDEAPAAWLAAPVQTLFGGPGRSVRVRAEPRFISAQFI
                     EVVAPDAELRRELLNYLWRMVLIVALVASTAGVLVYLSLNFFLVRPMQRITNAMERFR
                     ADPEAAEAQVVLSGRRDEIGRAEAELDRMQADLRTALSSRARLAALGEAVAKINHDLK
                     NMLTSAQIASERLAALKDPKVSQALPRLERALDRAVKLASGVLAYGKTQEAAPEPRAV
                     PLAAAIEAAAEEARVTERGITLSVSIVAAEQVNADPDQLHRILANLLRNAREAIEHQE
                     GRRAKGRITVALTRAGDASLVRVTDNGPGVPERVRERLFQPFSGTTRQGGAGLGLAIS
                     RELAQGHG"
     gene            complement(1465..>1976)
                     /locus_tag="VHN39_05935"
     CDS             complement(1465..>1976)
                     /locus_tag="VHN39_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HEX2815910.1"
                     /translation="LQTRAALEELLGRLAETRDALPPTGAAPMFLKVAPDLEDGEVET
                     IVETCAANGLAGIIVSNTTLSRPALASAAAGESGGLSGAPLMTLSTQVLSQFAQASAG
                     RLALIGVGGIASGADAYAKIRAGASAVQLYSALVYEGPGLVTRIKRDLAARLRADGFA
                     SVSAAVGAH"
BASE COUNT          266 a          733 c          710 g          267 t
ORIGIN      
        1 gccgtggcct tgggccagtt cgcgggagat ggccaggccc aggcccgcgc cgccttggcg
       61 ggtggtgccc gagaagggct ggaacagccg ctcgcgcacc cgctcgggca cgcctgggcc
      121 gttgtcggtg acccgcacca ggctcgcgtc cccggctcgg gtcagggcga ccgtgatgcg
      181 ccccttggcg cggcggccct cctggtgctc gatcgcctcg cgggcgttgc gcaagaggtt
      241 cgccaggatg cggtgcagct ggtcggggtc ggcgttcacc tgctccgccg cgacgatgct
      301 gaccgacagt gtgatgccgc gctcggtcac ccgggcctct tcggcggcgg cctcgatggc
      361 ggcggccagg gggaccgccc ggggctcggg cgcggcctcc tgcgtcttgc cataggccag
      421 cacgcccgag gccagcttca cggcgcggtc cagcgcccgc tccagccggg gcagggcctg
      481 gctcaccttg ggatccttca gcgccgccag ccgctccgag gcgatctggg cgctggtcag
      541 catgttcttc aggtcgtggt tgatcttggc caccgcctcg cccagcgccg ccagccgcgc
      601 gcggctgctc agcgccgtgc gcagatccgc ctgcatgcgg tccagctccg cctcggcgcg
      661 cccgatctcg tcgcggcggc cggacagcac aacctgcgcc tcggcggcct ccgggtcggc
      721 gcggaaccgc tccatggcgt tggtgatccg ctgcatgggc cggaccagga agaagttcag
      781 cgacagatag accagtacgc ccgccgtcga ggccaccagg gcgacgatca gcaccatccg
      841 ccacaggtag ttcaggagct cgcggcgcag ctcggcgtcc ggcgccacca cctcgatgaa
      901 ctgggcggag atgaacctgg gctcggcgcg gacccggacg ctccggcccg ggccgccgaa
      961 cagggtctgc accggcgcgg ccagccaggc ggccggcgcc tcgtcgcgca ggtcgacgaa
     1021 atagggcgtc tgggcgctgc gcttgccctg caggactagg tgcaggccct cgtccttggt
     1081 ctggacggcc acccactcga caccggcccc gcgcagcagc tgctcgcgct gcgggccgtt
     1141 gacgctggac ttggcgatgt cggcgaagcg ggaaaccgtc tcggcgccgc gcacccgctc
     1201 cagcagccac tgtcgctcga aggacgccag cgccggcggg aaggccagcg ccccgccgcc
     1261 ggccacgaac aggacggtca gcgtcagcag gcgcgcggaa aggccgcccg gccagaagaa
     1321 gcggggcctc ttgggcctgg gaagctcctg cggcgtgggg gcggcgtccg ccatgatcct
     1381 ctcgagttaa tccagcgtgg ccgcttcggc aacgcgaccc atggcctctg caagccctgg
     1441 gccctttcgc gacatcttcg gcgcctaatg tgcgcccaca gcggcgctca ccgaagcaaa
     1501 gccgtcggcg cgcagccgcg ccgcaaggtc gcgcttgatt cgtgtgacca gacccggacc
     1561 ctcgtacacc agggcggagt agagctgcac ggccgatgcc ccggcgcgaa tcttcgcata
     1621 agcgtccgcc cccgaggcga tcccgcccac gccgatcagc gccagccgtc cggccgaggc
     1681 ctgggcgaac tggctcagca cctgcgtcga gagcgtcatc agcggcgcgc cggagagccc
     1741 gcccgactcg ccagcggcgg ccgaggccag cgccggccgc gagagcgtgg tgttggagac
     1801 gatgataccg gccaggccgt tggccgcgca ggtctccacg atggtctcga cctcgccgtc
     1861 ctcgaggtcc ggcgcgacct tcaggaacat cggagccgcg ccggtcggcg gcagggcgtc
     1921 gcgggtctcg gccaggcgcc ccagcagctc ttccagggcg gccctggtct gcaggg
//
LOCUS       DATAJL010000304         4123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_31065,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000304 DATAJL010000000
VERSION     DATAJL010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4123
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31065"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(57..1184)
                     /locus_tag="VHN39_05940"
     CDS             complement(57..1184)
                     /locus_tag="VHN39_05940"
                     /inference="COORDINATES: protein motif:HMM:NF016242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidogalycan biosysnthesis protein"
                     /protein_id="HEX2815911.1"
                     /translation="MPDIAIVDSLRAVDRAQWQALSGQGLEGYDYLLAVEDAGLPGFA
                     WRYVLASQDGRLVAAAPAFLTDYALETTLVGAGKRALDAVREVFPRAFKLRLACIGSP
                     CTGSPGLGFSQSVAAAERATLLADMLAAFEGEARAVRCGLLALKDVAEPEQALWDAAA
                     RPLGYRPMASLPIAVLPIDFADLDAYLAGLSYTARKDMRRKLRVQPRLRIEIRTQVDD
                     VADRLLAFYEATRARADMAFEELTEAYFTGVPRAMPERAFWVLYFEGEALVGANLLLQ
                     DETTLVDKYILTDPVRGRALNLYFVSWFTNVRLCLERGLKRYQPGQAAYENKLRLGCR
                     LTRTSIYFRHRNAVVNGVMQLFSPLFAADTAKGSDSVSPLS"
     gene            complement(1177..2022)
                     /locus_tag="VHN39_05945"
     CDS             complement(1177..2022)
                     /locus_tag="VHN39_05945"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2815912.1"
                     /translation="MKAAVKDRSFQIHGDSGKGVMLIHGLTGAPQEMKSVGRVLHRRG
                     FSLCGPMLAGHGGTEADVLKTDWRDWVDSAAAAYETFAREVDEVYVAGICAGGAIGLE
                     LCAQFPQIKGAAVYSMLFEYDGWNMPKITLGAPVIQAVANLPLLRSLSFVQPAPYGFK
                     DERLRSLAENALQSLIPGALDRMPLGCMYQLYRLARHVEKVAPQVRAPVLVVHARQDD
                     LSDLRNAHRLRAALGGPSELVVLEDSFHMVHVDNEHARVAELTAAFFGAANAAVGAPR
                     AAVDA"
     gene            complement(2019..2939)
                     /locus_tag="VHN39_05950"
     CDS             complement(2019..2939)
                     /locus_tag="VHN39_05950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815913.1"
                     /translation="MRAALLHLDDALMQQAALVGQVAVGGGRDLDFRDLGPALRLWSR
                     PKALGRLGARLRRDLPASAGPALVFLGSGDFHHVTPILLARAIEASGRAPVTVLHFDN
                     HPDWVRFNNGAHCGSWVGSAARMPGVARVITVGVCSSDIHRPSPRRADLDLLREGRLE
                     LYAYQAWGGAASVELCGRSWPTIEAMGETAFAAFLPSRVETDAIYITIDKDVLRAADA
                     ATNWDQGRTSLDFLKALLTPLIKTHRVIGADVVGDWSQAVYGGGPVAALLKRGEAMLD
                     QPHRRPAPQACAANEPVNLDLLALIGGDGR"
     gene            complement(2950..>4123)
                     /locus_tag="VHN39_05955"
     CDS             complement(2950..>4123)
                     /locus_tag="VHN39_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018083411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2815914.1"
                     /translation="LLHRQLDRLPQAASQHLHREKVELAALIARDAEAKFGAKGRVHF
                     NVGGAQAIEDSLKLVRNATGGKSRMFAFQGGYHGRTLGASAITSSYRYRRRYGHFGDR
                     AHFVEFPYAFRGPKGMTKEEYGDKCVADFARLFESEFHGVLDAKAGEAEFAAFYVEPI
                     QGTGGYVIPPKNFFIDLKKVLDRYGILLVVDEVQMGIWRTGKLWSIEHFGVQPDVLVF
                     GKSVTNGMNPLSGIWAKEALINPQIFPPGSTHSTFNANPMGTSVALETLRMAAEGDYD
                     RTVPEKGAYFLAGLRDLQSRWPQIGEVDGLGLALRAEICQLDSYTPDKALLDRMIAEG
                     LRGELEIDGKRMGLILNQGGYHKNVITFAPSLDITTQEIDLALKLLDALLRRCVEA"
BASE COUNT          649 a         1437 c         1430 g          607 t
ORIGIN      
        1 ctctatgctg cggacgccgc cgccgcgccg caacctcaac ctggggggcc cgggcgtcaa
       61 gacaagggcg acacgctgtc gcttcctttg gctgtgtccg cagcgaagag cggcgagaag
      121 agctgcatga cgccgttcac caccgcgttg cggtggcgga agtagatcga agtccgggtg
      181 agccggcagc caaggcgcag cttgttctcg tatgccgcct ggccgggctg gtaacgcttc
      241 aggccccgct ccaggcacag ccgcacattg gtgaaccagc tgacgaaata gaggttgagc
      301 gcccgcccgc ggaccggatc ggtcagaatg tacttgtcca ccagggtggt ctcgtcctgc
      361 agcagcaggt tcgccccgac cagcgcctcg ccctcgaagt agaggaccca gaaggcgcgc
      421 tccggcatgg cgcgcggcac gccggtgaaa taggcctcgg tcagctcctc gaaggccatg
      481 tcggcgcgcg cgcgggtggc ctcgtagaag gcgagcaacc ggtcggccac atcgtcgacc
      541 tgcgtacgga tctcgatccg caggcgcggc tggacccgaa gcttccggcg catatccttg
      601 cgcgccgtgt agctgagccc cgccaggtag gcgtcgaggt cggcaaaatc gatgggcagg
      661 accgcgatcg gcaggctggc catcggccgg tagcccagcg gccgggcggc cgcgtcccac
      721 agggcctgct ccggctcagc gacatccttc aaggcgagga ggccgcagcg gacggcgcgg
      781 gcttcaccct cgaaagccgc cagcatgtcg gccagcagcg tcgcccgctc ggccgctgcg
      841 acactctgcg agaaccccag gccgggggag ccggtgcacg gagaaccgat acaggccagc
      901 cgcagcttga aggcccgcgg gaagacctcg cggaccgcgt cgagcgccct cttgccggcg
      961 cccaccaggg tggtctccag ggcgtagtcg gtgaggaagg ccggcgcggc ggcgacgagg
     1021 cgcccgtcct ggctcgccag cacatagcgc caggcgaacc cgggcaggcc ggcgtcctcg
     1081 accgcaagga gatagtcgta gccctccagg ccctgacccg acagcgcctg ccattgggcc
     1141 cggtcgaccg cccgaaggct gtcgacgatc gcgatgtcag gcatcgacgg ccgcgcgcgg
     1201 cgccccgacc gcggcgttcg cggcgccgaa gaaggcggcg gtcagctcgg ccacccgggc
     1261 gtgctcgttg tccacgtgga ccatgtggaa gctgtcctcc agcaccacca gctcgctcgg
     1321 gccccccaga gcggcgcgca ggcgatgggc gttgcggagg tccgacaggt cgtcctggcg
     1381 cgcatggacg accaggaccg gcgcccggac ttgcggggcc accttctcca catgccgcgc
     1441 caggcggtag agctgataca tgcagcccag cggcatgcgg tcgagcgcgc cgggaatcag
     1501 cgactgcagg gcgttctccg ccaggctgcg gaggcgctcg tccttgaagc cgtaaggggc
     1561 cggctggacg aagctcaggg acctgagcag cggcaagttg gccaccgcct ggatgaccgg
     1621 ggcgccgagg gtgatcttcg gcatgttcca gccgtcatat tcgaacagca tggaatagac
     1681 cgcggcgccc ttgatctgtg ggaactgggc gcagagctcc aggccgatgg ccccgccggc
     1741 gcagatgccg gccacataga cctcgtcgac ctcgcgggcg aaggtctcgt aggcggccgc
     1801 ggcgctgtct acccaatcgc gccagtcggt cttcagcacg tcggcctcgg tcccgccatg
     1861 gccggccagc atggggccgc agaggctgaa gccgcgcctg tgcaggaccc gacccaccga
     1921 cttcatctcc tgcggcgcgc cggtcaggcc gtggatcagc atcacgccct tgccgctgtc
     1981 gccgtggatc tggaagctgc ggtccttgac ggcggccttc atcgcccgtc cccgccgatc
     2041 agggccagga ggtccaggtt gacgggctcg ttcgccgcgc aggcctgggg ggccggcctg
     2101 cggtgcggct ggtccagcat cgcctcgccg cgcttcagca gcgccgccac cggacccccg
     2161 ccgtagaccg cctgcgacca gtcgccaacc acgtcggccc cgatcacgcg gtgggtcttg
     2221 atgaggggag tcagcagcgc cttgaggaaa tccaggctgg tgcggccctg gtcccagttg
     2281 gtggcggcgt cagcggcgcg cagcacgtcc ttgtcgatgg tgatgtagat cgcgtcggtc
     2341 tcgacgcggc tgggcaggaa ggccgcgaag gccgtctcgc ccatcgcctc gatcgtcggc
     2401 cagctccggc cgcacagttc caccgaagcg gcgccgcccc aggcctgata ggcgtagagt
     2461 tcaagccggc cttcgcgcag caggtcgagg tccgcgcggc gcgggctggg ccggtggatg
     2521 tccgagctgc agacgcccac cgtgatcacc cgcgccaccc cgggcatccg cgccgcggag
     2581 cccacccatg atccgcagtg ggcgccgttg ttgaagcgca cccagtcggg gtggttgtcg
     2641 aagtgcagca cagtcaccgg cgcgcgcccg gacgcctcga tggcgcgggc cagaaggatc
     2701 ggcgtgacat ggtgaaagtc gccggacccc aggaacacca gggccggacc ggcgctggcc
     2761 ggcaggtccc ggcgcaggcg cgcgccgagg cgtcccaggg ccttcgggcg gctccatagc
     2821 ctgagcgcag gtccgaggtc gcggaagtcc aggtcccgcc cgccgccgac cgccacctgg
     2881 ccgaccaggg ccgcctgctg catcagggcg tcgtcgagat ggagcagcgc cgcgcgcatc
     2941 gcccgccgat caggcctcca cgcagcggcg cagcagggcg tcgagcagct tcagcgccag
     3001 atcgatctct tgcgtggtga tgtccagcga gggggcgaag gttataacgt tcttgtggta
     3061 gccgccctgg ttgaggatca ggcccattcg cttgccgtcg atctccagct cgccccggag
     3121 cccttcggcg atcatgcggt cgagcagcgc cttgtccggc gtgtagctgt cgagctggca
     3181 tatctcggcg cgcagggcta ggcccaggcc gtccacctcg ccaatctgcg gccagcgact
     3241 ctgcaggtcc cgcaggcccg ccaggaagta ggcgcccttc tccggaaccg tccgatcgta
     3301 gtcaccctcg gcggccatcc gcagggtttc cagcgccacg gaagtcccca tggggttggc
     3361 gttgaacgtc gaatgggtcg atccgggcgg gaagatctgc ggattgatca gcgcctcctt
     3421 ggcccagatt ccggaaagcg ggttcatccc attggtcacc gacttgccga acaccagcac
     3481 gtccggctgc acgccgaagt gctcgatcga ccagagcttg ccggtccgcc agatgcccat
     3541 ctgcacctcg tcgaccacca gcaggatgcc gtagcggtcg agcaccttct tgaggtcgat
     3601 gaagaaattc ttcggcggga tcacatagcc gccggtgccc tggatcggct ccacgtagaa
     3661 agccgcgaac tccgcctcgc cggccttggc gtccagcacc ccgtggaact cgctctcgaa
     3721 caggcgcgcg aaatcggcca cgcacttgtc gccatattcc tccttggtca tgcccttcgg
     3781 gccccggaag gcgtagggga actcgacgaa gtgcgcccgg tcgccgaaat ggccgtagcg
     3841 gcggcgatag cgataggacg aggtgatcgc cgacgcgccc agcgtgcggc cgtggtagcc
     3901 gccctggaag gcgaacatcc ggctcttgcc gcccgtggcg ttgcgaacca gcttcaggct
     3961 gtcctcaatc gcctgggccc cgccgacatt gaaatgcacc cggcccttgg cgccgaattt
     4021 cgcctcggcg tcgcgagcga tcagggcggc cagctcaacc ttttcgcggt gcagatgctg
     4081 cgaggccgcc tgcggcaggc ggtcgagctg gcggtgcagg agg
//
LOCUS       DATAJL010000305         1662 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105456,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000305 DATAJL010000000
VERSION     DATAJL010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105456"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..903
                     /locus_tag="VHN39_05960"
     CDS             184..903
                     /locus_tag="VHN39_05960"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815915.1"
                     /translation="MFSFKIPGWARAAVVAILLAALPAGAASAQAVFGDVSGPNKISV
                     TELSSQTLSVDYSLLGAHFTGDVTSGSTGGDIWAVGPHFSNFIESGLPDNSLAFGHVF
                     WLEPGSSLDDLADARFNGFRLGSCSCGDQSPNVTFASDLTWATLSNFDDSNPWRDFFC
                     RVDSVFTTCPILQNGQSFTTPMEYENLDAHLVVADPLTVTFNDRGDVDTGVPEPASWG
                     LMLIGFGLAGATLRRRRALTA"
     gene            1095..1604
                     /locus_tag="VHN39_05965"
     CDS             1095..1604
                     /locus_tag="VHN39_05965"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEX2815916.1"
                     /translation="MTVQPAGSPALTLQFETPEDGPLVDALIDRAFGPGRFTKVSERV
                     REFATFAPELSVCAWSDGHLLGCARMWRVRVGGRPAMFLGPFAVELGERNAGFGARLI
                     ARACEAAQRAGESHVVLVGDEPYFGRVGFSTAGGREVIMPGPVDQRRVLVRALKADAG
                     ELVGRVQPA"
BASE COUNT          235 a          580 c          574 g          273 t
ORIGIN      
        1 ctgaagggcc acgcacgctc gcccgtcgcg cgtaaagatg gccgatttta taccccattt
       61 gggggacgac cgccgattcc ctgaccctac gataagccca gcgtggggtg atcagggcgc
      121 gcgagcgcct tgggatcgga cgggttggct gttcgacacc acgctgttgg cggggatgtc
      181 gcaatgtttt cgttcaagat tccaggctgg gcgcgcgcgg cggtcgtcgc gatcctgttg
      241 gcggccctgc cggccggggc ggcgtccgcc caggcggtct tcggcgacgt cagcggcccg
      301 aacaagatca gcgtcaccga gctgtcgtcc cagacgctca gcgtcgatta ttcgttgctc
      361 ggcgcccact tcaccggaga cgtcacaagc gggtcgacgg ggggcgacat atgggccgtc
      421 ggtccgcatt tcagcaactt catcgaatcc ggcctgcccg acaacagcct ggcgttcggg
      481 cacgtcttct ggcttgagcc gggcagcagc ctggacgacc tggccgacgc caggttcaac
      541 ggcttccggc tgggatcctg cagctgcggc gaccagagtc ccaacgtcac cttcgccagc
      601 gacctgacct gggcgaccct gagcaatttc gacgattcca acccgtggcg ggacttcttc
      661 tgcagggtcg actcggtttt caccacctgt cccatcctgc agaacggcca gtccttcacc
      721 acgcccatgg aatacgagaa ccttgacgct cacctggtgg tcgccgaccc gctgacggtg
      781 acgttcaacg accgcgggga cgtggacaca ggcgtgccgg aacccgcgag ctggggcctg
      841 atgctcatcg ggttcggcct ggccggggcg acgctgcgcc ggcgccgggc cctgaccgcc
      901 tagaccccgc aacgccctcg ggccgttgac ccgggggcgg taaggcccta tttgcgccgg
      961 cctcgaccac aaggtcctta gaccgatgcg acgactgcga cgaactgggc gcgccagctg
     1021 cgccacctga ctccgcaccc gcggcgcgcc agcgcccgcg ggatcgtcgc cctcgtagtc
     1081 gaagtctccc agtcatgacc gtccagcccg ccggctcccc ggcgcttacc ctgcaattcg
     1141 aaacccccga ggatgggcca ctcgtcgacg ccctgatcga ccgcgccttc gggccgggcc
     1201 gtttcaccaa ggtctccgag cgggtccgcg agttcgcgac cttcgcgccg gagctcagcg
     1261 tctgcgcctg gtctgacggc cacctgctgg gctgcgcgcg catgtggcgg gtgcgggtcg
     1321 gcggccggcc ggcaatgttc ctgggcccct tcgccgtcga gctgggcgag cgcaacgcgg
     1381 gcttcggcgc gcggctgatc gcgcgggcct gcgaggccgc ccagcgcgca ggcgagagcc
     1441 atgtggtgct ggtgggcgac gagccctact tcggccgcgt cggcttctcc acggcgggcg
     1501 gccgcgaagt gatcatgccc gggccggtgg accagcggcg ggtgctggtg cgcgcgttga
     1561 aggccgacgc tggcgagctc gttgggcgcg tgcagcccgc ttgaggcgaa ctgcgggcgc
     1621 gcctaccttc cccggtatgg cggacgaggc ggtgagaccg gg
//
LOCUS       DATAJL010000306         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_43937,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000306 DATAJL010000000
VERSION     DATAJL010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43937"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1305)
                     /locus_tag="VHN39_05970"
     CDS             complement(<1..1305)
                     /locus_tag="VHN39_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HEX2815917.1"
                     /translation="MVVLGLVVIVGLLVAGARYGVLLPQTRLLIEAGADGLKVGRLGR
                     LKIEGLSGDIWRDVAVRKLTIRDEGGVWLEADNLHMTWRYVELLRRNFHADSIDVETL
                     KILRRPTLTEKGKDTGLPLSFHIDEAHARVELFPDFSIERGVYDLDLNLDVERSGDQR
                     GRIHSASVLHAGDHLNVDYDVAKTRPLAVLIDGAEARGGALAGAFGLPSNQAFTLKAA
                     ATGKMSEGQVIAVVSSGVTQPLKAQGAWSKDGGDARGVISLTASTLTAPYAERFGPRA
                     SFVVAGRRAGPDLFALDARVASENLTVRAWGLGDVGQRRIGPQGLQLTAETAALSRIT
                     GGPDMGATRIVGRVTQAKAAWRFAGAASMSGASLGGYSLAQAAGPVEITENAGQWDVR
                     SRLAGAGGRGAGLVAAALGAAPKASVDASRLADGRLLLRDLQM"
     gene            complement(1362..>1518)
                     /locus_tag="VHN39_05975"
     CDS             complement(1362..>1518)
                     /locus_tag="VHN39_05975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEX2815918.1"
                     /translation="VPSFRELSVGAGFGLRYNLGFGPIRVDIATPLTSRRGQGPFQAY
                     VSIGQSF"
BASE COUNT          232 a          560 c          505 g          221 t
ORIGIN      
        1 catctgcagg tcgcgcagca ggagccgccc gtccgccagc cggctggcgt cgacactggc
       61 cttgggcgcc gcgcccagcg ccgcagccac aagaccggcg ccacgtccgc cggccccggc
      121 gaggcggctg cggacatccc attgccccgc gttttcggtg atctccaccg gcccggccgc
      181 ctgcgccagg ctgtagcctc caaggctcgc gcccgacatc gaggccgcgc ccgcgaagcg
      241 ccaggcagcc ttggcctggg tcacacggcc cacaatccgc gtcgcgccca tgtccggtcc
      301 gccggtgatg cgggacagcg ccgcggtttc ggccgtcagc tggagcccct gcggcccgat
      361 cctgcgctga cccacgtcac caaggcccca cgcccgcacg gtcaggttct cggacgccac
      421 ccgggcgtcg agcgcgaaga gatccggtcc ggcccggcgc cccgcgacga caaagctcgc
      481 ccgggggccg aaccgctcgg cgtagggcgc ggtcagggtc gaggcggtca aagaaatgac
      541 cccacgcgcg tcgccgccgt ccttcgacca agcgccctgc gctttcagcg gctgggtgac
      601 gccggagctg accaccgcga tgacctgccc ctccgacatc ttgccggtag ccgccgcctt
      661 gagggtgaag gcctggttgg acggcaggcc aaaggctccg gcgagcgccc cgccgcgggc
      721 ctcggcgccg tcgatcagga cagccagcgg ccgggtcttg gcgacgtcat agtccacgtt
      781 caggtgatcg ccggcgtgca ggacgctggc ggagtggatc ctgccccgct ggtcgccgct
      841 gcgttccaca tcgaggttga ggtcgaggtc gtaaacgccc cgctcgatgc tgaagtccgg
      901 gaacagctcg acccgggcgt gggcctcgtc gatgtggaac gacagcggca ggccggtgtc
      961 cttgcccttc tcggtcagag tcgggcgacg caggattttg agcgtctcga cgtcgatgga
     1021 gtctgcatgg aagttgcgcc ttaagagttc cacgtaacgc catgtcatat gcaggttatc
     1081 ggcttcgagc cagacgccgc cctcatcgcg gatggtgagc ttgcgaaccg cgacgtcgcg
     1141 ccagatgtcg ccgctcaggc cctcgatttt caaccgccct agccgcccca ccttcagccc
     1201 gtctgcgccg gcctcgatca gcagccgcgt ctgcggcagc agaaccccgt agcgcgcgcc
     1261 cgccaccagc agtccgacga tcaccaccag gccgaggacc accaatacga tggcctcgat
     1321 ctgagtccgg cgccgccgga ctgcaggggt gtcggcagcg ctcaaaagct ttgcccgatg
     1381 ctcacatagg cctggaacgg cccctggccc cgccgactgg ttagaggcgt ggcgatgtcc
     1441 acgcggatcg gcccgaagcc caggttgtag cgcaggccga agccggcccc gacgctgagt
     1501 tcgcggaagc tcgggacc
//
LOCUS       DATAJL010000307         7802 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_43973,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000307 DATAJL010000000
VERSION     DATAJL010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7802)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7802)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7802
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_43973"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VHN39_05980"
     CDS             <1..413
                     /locus_tag="VHN39_05980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815919.1"
                     /translation="WQETREPNDYVRHLKHDSPMNGELKHSEGHDRYALPTVIFRGPG
                     GEHTVAGWVPYEAYEAGLEAALPGATADPRPDPTPAQAFERWGMLTGKELAFLCGEAA
                     KPPAGVVTHDWGDGLVYYTASEARARGIKALASA"
     gene            complement(410..1462)
                     /gene="leuB"
                     /locus_tag="VHN39_05985"
     CDS             complement(410..1462)
                     /gene="leuB"
                     /locus_tag="VHN39_05985"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEX2815920.1"
                     /translation="MTDLLLLPGDGIGPEVTAQVRRVAGVIAPDLTLDERPFGGISYD
                     QLGSPLTDETLAAAKAARAVLMGAVGGPKWAGVPRDKRPEAGLLGLRAGMGVFANLRP
                     ALCFQPLADASSLKREVIEGLDFMIVRELTGGVYFGQPRFIEDLPGGGRRAVDTQVYT
                     TMEIERIARVAFELARGRRNKVSSAEKSNVMETGLLWREVVTDLHARDYADVELEHIL
                     ADNAAMQIVKNPKQFDVMVTDNLFGDILSDAAAQLTGSLGMLPSAALGEPGAPGLYEP
                     IHGSAPDIAGKGVANPLAAILSFEMALRWSLDRADLADRLFAAVGQALEKGARTPDLG
                     GAMTTLQMADAVLAEL"
     gene            complement(1478..1780)
                     /locus_tag="VHN39_05990"
     CDS             complement(1478..1780)
                     /locus_tag="VHN39_05990"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HEX2815921.1"
                     /translation="MTLIIAGTVRVPPENLASLKPHQLAMLAASRAEDGCLTYSYGVD
                     VAEPGLIRVFEVWRDQAAIDAHFKAPHMGVWRAACAEHGVSDRKLFAYETASERPL"
     gene            complement(1777..2388)
                     /gene="leuD"
                     /locus_tag="VHN39_05995"
     CDS             complement(1777..2388)
                     /gene="leuD"
                     /locus_tag="VHN39_05995"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEX2815922.1"
                     /translation="MDAFTRLDAKIAPLPLANIDTDQIIPKQFLKTVEREGLAKGLFY
                     DLRFDGDGKAKPDFVLNRPEYKGVGVLVAGDNFGCGSSREHAPWALMDFGIRCVVSTS
                     FADIFYNNCFQNGLLPVVLPAAEVQALMEEAKGGNHLVTVDLEAQTVVSPSGRTFAFE
                     IDPQRKEKMLKGLDAIGETLQAASDIDLYEMKAALSKPWLEDA"
     gene            complement(2388..3209)
                     /locus_tag="VHN39_06000"
     CDS             complement(2388..3209)
                     /locus_tag="VHN39_06000"
                     /inference="COORDINATES: protein motif:HMM:NF024859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2815923.1"
                     /translation="MIMGLDHVAVAVRDFEASVDAYRRLLGREPELEPRDGANRAWFH
                     MANMALEVISPSSSKEGGGQGPAGDRVRARLDEAGDGQWIVAFQSDDVAADARLLGRR
                     GLEVEPYLDVARVKAAGLDFVLTPGRIGAQPSPATGDEAAAIPALDHIVVHTPNPDRA
                     LGLYGAKFGLDLRLDRANEQWGARQLFFRCGGTVFEVGASLKGPVTDEPDRFGGLAWR
                     VTDPEAAQARMAACGFDVSEVRTGRKPGTKVFTVRDAPGGVPTLMLAPSPERDPA"
     gene            complement(3220..4629)
                     /gene="leuC"
                     /locus_tag="VHN39_06005"
     CDS             complement(3220..4629)
                     /gene="leuC"
                     /locus_tag="VHN39_06005"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEX2815924.1"
                     /translation="MPGKTLYDKIWDSHLVADQDGESIFYIDLHLIHEVTTPQAFAGL
                     RAAKRPVRRPDRTLAVADHNVPTEGQALGVGAVADEEARLQLQTLERNVKDYGIEFFP
                     MGDIRNGIVHVVGPEQGRTQPGMTIVCGDSHTSTHGAFGALAQGIGTSEVEHVLATQT
                     LRQKKSKNFRVTIEGVPIAGVGAKDFALAVIGEIGTAGGAGYVIEYAGSAIRALSMEG
                     RMTLCNLTIEAGARAGLVAPDETTFDYLRGRPATPKGAAWEMALPYWKSFFSDPEAHF
                     DREITIDAGSIAPLVTWGTSPEDVIAVTDRVPTLDSFTTPDKRASAERALEYMGLEAG
                     QPISEAKVDVVFIGSCTNSRIEDLRAAAKIVEGRTVAGHVRAMVVPGSGLVRAQAEDE
                     GLDEIFLAAGFEWREPGCSMCLAMNPDKVGPGQRCASTSNRNFEGRQGRAGRTHLMSP
                     VMAAAAAIAGHIADVRDYL"
     gene            complement(4916..5908)
                     /locus_tag="VHN39_06010"
     CDS             complement(4916..5908)
                     /locus_tag="VHN39_06010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEX2815925.1"
                     /translation="MTLNSETRLALVIGATGGIGGAVAERLLADGWRVRALHRNPETA
                     HRAFGLPGLDWVKGDAMIEADVVAAAEGVSLVMHGANPPGYKNWAGLQLPMLNAAIAA
                     ARAADARLFFPGTVYNYGPDAFPNLTETSAQTPLTRKGAIRVQMERRLAEASEDGLRV
                     LIVRCGDFIGPKPGNNWLAQGLVKPGKPLAAVSYPGPMSVPHCWAYLPDVAETMVRLA
                     QDEANLAAFEVFHMRGQTLTGDELVAALEAVAGRKLPVSRLPWFAIRAIAPFNETMRE
                     MLEMRYLWETPVLLDNSRLVARLGAEPHTPIVEALTAALAGLGALPHQPTALAA"
     gene            6000..6899
                     /locus_tag="VHN39_06015"
     CDS             6000..6899
                     /locus_tag="VHN39_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX2815926.1"
                     /translation="MPGPNDWDLFQSLHAVLEAGTLSAAARLRGLTQPTLGRHIETLE
                     QRLGSPLFLRSPRGLQPTDLARELKPHLHDMAAAASAAVRDASGAANSLAGSIRITCS
                     EIVGAEVLPPILTEFREAHPGIVIELMMSNIVDDLSRREADIAVRMAPPTQSALVAKK
                     VGEVELGFYATAKYLDRHGVPDSMASFEDHTIIGFDGPARSIRDLAGINIPVSRETFD
                     FRSDSDLAQLAVMRADYGIGVCQPTIARRHGLVRILPNVTVFNLGVWIVMHENLRASR
                     RMRLMFDHLVDGVTGYIREGRNG"
     gene            6896..7288
                     /locus_tag="VHN39_06020"
     CDS             6896..7288
                     /locus_tag="VHN39_06020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2815927.1"
                     /translation="MSAPYAGGCLCGQVRWRATAEPINVRLCHCRNCQRATGGPFFAR
                     ALFNDPDVERTGETTRWASSQRLHRLSCARCGTPVFAEPQDGPWIAVSLTTLDDPTAL
                     APGSHIWVTEKRDWVRIDDGLPQFPEGA"
     gene            7437..>7802
                     /locus_tag="VHN39_06025"
     CDS             7437..>7802
                     /locus_tag="VHN39_06025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815928.1"
                     /translation="MLGELAELGLMVARELAVRTRECEDVDQTVALAGAFQKVSRVVR
                     LTVALDFKLGRDAAREARVEAREAEAAEAEADRQGRLEAACAAPGPIAARKTRVSNLL
                     NRLIWNECEGDSEDYEVLFD"
BASE COUNT         1136 a         2761 c         2707 g         1198 t
ORIGIN      
        1 actggcagga gacccgggag cccaacgact acgtccgcca cctcaagcac gacagcccga
       61 tgaacggcga gctgaagcac tccgagggcc acgaccgcta cgccctgccg accgtgatct
      121 tccgtggtcc cggcggcgag cacacggtgg ccggctgggt cccctatgaa gcgtatgagg
      181 ccggtctcga agccgccctg cccggcgcca cggccgatcc gcgccccgac ccgacgccgg
      241 cccaggcctt cgagcgctgg ggcatgctga cggggaagga gctggccttt ctctgcggcg
      301 aggccgccaa gccacccgcg ggcgtggtga cccacgattg gggcgatggg ctcgtctact
      361 acactgcgtc cgaggcccgc gcccggggga tcaaggcgct ggcctccgcc tagagttcgg
      421 ccaggaccgc atcggccatc tgaagggtgg tcatggcgcc gccgaggtcg ggggtgcgcg
      481 cacctttttc cagcgcctgg cccacggcgg cgaacagcct gtcggccagg tccgctcggt
      541 ccagcgacca gcggagcgcc atctcgaagc tgaggatcgc ggccaggggg ttggcgacgc
      601 ccttgccggc gatgtccggc gccgagccgt ggatcggctc atagaggccc ggggcgccgg
      661 gctcccctaa ggcggccgaa ggcagcatgc ccagcgagcc ggtcagctgg gccgcggcgt
      721 cgctcaggat gtcgccgaac agattgtcgg tgaccatgac gtcgaactgc ttcgggttct
      781 tgacgatctg catggccgca ttgtcggcca ggatgtgctc cagctcgacg tcggcgtagt
      841 cgcgggcgtg caggtcggtg accacctcgc gccacaggag gcccgtctcc atgacgttgg
      901 atttctcggc gctggagacc ttgttgcgcc ggccgcgcgc cagttcgaag gccacgcggg
      961 cgatccgctc gatttccatc gtcgtataga cctgggtgtc gacggcgcgg cggccgccgc
     1021 cgggcaggtc ctcgatgaac cgcggctggc cgaaatagac cccgccggtg agctcccgga
     1081 cgatcatgaa gtccaggccc tcgatcactt cgcgcttgag gctggaggcg tcggcgagcg
     1141 gctggaagca gagcgcgggc cgcaggttcg cgaacacccc catgccggcg cgcaggccca
     1201 gcaaacccgc ctcaggccgc ttgtcgcgcg ggacgcccgc ccacttcggc ccgcccacgg
     1261 cgcccatcag cacggcccgg gcggccttgg cggcggccag cgtctcatcc gtcagcggcg
     1321 agcccagctg gtcgtagctg atcccgccga acgggcgctc gtcgagggtc agatcgggcg
     1381 cgatcacgcc ggccacccgc cgcacctggg cggtcacctc gggtccgatc ccgtcgccgg
     1441 gcaggagcag caggtcggtc atcggggagc ctcgaatcta aagcggacgt tccgaggcgg
     1501 tctcgtaggc gaagagcttg cgatcggaaa ccccatgctc cgcgcaggcc gcccgccaga
     1561 cgcccatgtg cggcgccttg aagtgggcgt cgatcgcggc ctggtctcgc cagacctcga
     1621 acacgcggat caggccgggt tcggccacgt cgacgccata gctgtaggtg aggcacccat
     1681 cctcggcgcg gctggcggcc agcatggcga gctgatgcgg cttcaaggac gccaggttct
     1741 cgggcggcac gcgcaccgtg cccgcgatga tcagggtcat gcgtcctcca gccagggttt
     1801 cgagagcgcc gccttcatct catagaggtc gatgtcgctc gccgcctgca gggtctcgcc
     1861 gatggcgtcc aggcccttca gcatcttttc cttgcgctgc ggatcgatct cgaaggcgaa
     1921 ggtgcggccc gacggcgaga ccacggtctg ggcctccagg tcgacggtca ccaggtggtt
     1981 gccgcccttg gcctcctcca tcagcgcctg cacctcagcg gccggcagca cgaccggcag
     2041 caggccgttc tggaagcagt tgttgtagaa gatgtccgcg aagctggtgg agaccacgca
     2101 gcggatcccg aagtccatca gcgcccaggg cgcgtgctcg cggctcgacc cgcagccgaa
     2161 attgtcgccg gccaccagca cgcccacgcc cttatattcc ggccggttca gcacgaagtc
     2221 cggcttggcc ttgccgtcgc catcgaagcg caggtcgtag aacaggccct tggccaggcc
     2281 ctcgcgctcc acggtcttga ggaactgctt ggggatgatc tggtcggtgt cgatgttggc
     2341 caagggcagc ggcgcgatct tggcgtccag gcgggtgaag gcgtccatca ggcaggatct
     2401 ctttcggggg agggcgccag catcagggtc ggcacgccgc ccggcgcgtc gcgcacggtg
     2461 aagaccttgg tgccgggctt gcggccggtg cggacctccg agacgtcgaa gccgcacgcc
     2521 gccatgcggg cctgggcggc ctcggggtcg gtgacccgcc aggccaggcc gccgaagcgg
     2581 tcgggttcat cggtcaccgg ccccttcagg ctcgcgccca cctcgaacac cgtgccgccg
     2641 cagcggaaga acagctggcg cgcgccccac tgttcgttgg cgcggtcgag cctgaggtcg
     2701 aggccgaact tggcgccata gaggccgagc gcccggtcgg ggttgggcgt gtggacgacg
     2761 atgtggtcca gcgccgggat ggccgcggcc tcgtcgccgg tcgcgggcga gggttgcgcg
     2821 ccgatgcggc cgggcgtcag cacgaagtcg aggccggcgg ctttgacgcg cgccacgtcg
     2881 agatagggct caacctccag gccgcgacgg ccgagcagcc gggcgtcggc ggcgacatcg
     2941 tcggactgga aggccacgat ccactgtccg tcgcccgcct cgtcgagccg cgcgcgaacg
     3001 cggtctccgg cggggccctg gccgccccct tctttgctgc tggagggcga gatcacctcc
     3061 agcgccatgt tggccatgtg gaaccaggcg cggttggccc cgtcgcgggg ttcgagttca
     3121 ggctcgcgcc ccagcagccg gcgataggcg tcgaccgagg cctcgaagtc ccggacggcg
     3181 accgcgacat ggtcgaggcc cataatcatg agaagccgat cacagatagt cccgcacgtc
     3241 ggcgatatgt cccgcgatgg cggcggcggc ggccatcacc gggctcatca gatgggtgcg
     3301 gccggcgcgg ccctggcggc cctcgaagtt gcggttggag gtcgacgcgc agcgctggcc
     3361 gggccccacc ttgtcggggt tcatggccag gcacatggag cagccgggct cgcgccattc
     3421 gaagccggcg gccaggaaga tctcgtccag gccctcgtcc tcggcctgcg cccgcaccag
     3481 gcccgagccc ggcacgacca tggcgcggac gtggccggcg acggtccggc cctccacgat
     3541 cttcgcggcg gcgcgcaggt cctcgatgcg gctgttggtg caggagccga tgaacaccac
     3601 gtcgaccttg gcctcgctga ttggttgacc ggcttccagg cccatatatt ccagcgcccg
     3661 ctcggcggag gcccgcttgt ccggcgtcgt gaagctgtcg agcgtcggca cccggtcggt
     3721 caccgcgatc acgtcctccg ggctcgtgcc ccaggtcacc agcggcgcga tggagcctgc
     3781 atcgatggtt atctcccggt cgaaatgtgc ttccggatcg gagaagaagc tcttccagta
     3841 gggcagcgcc atctcccagg ccgcgccctt gggcgtcgcc gggcggccgc gcagatagtc
     3901 gaaggtggtc tcgtccggcg ccaccagtcc cgcccgggcg ccggcctcga tggtcaggtt
     3961 gcacagggtc atgcggcctt ccatcgacag cgcccggatc gccgagccgg cgtattcgat
     4021 gacgtagccg gcgccccccg ccgtcccgat ctcgccgatc acggccaggg cgaagtcctt
     4081 ggcgcccacg cccgcgatcg gcacaccttc gatcgtgacg cggaagttct tcgacttctt
     4141 ctgccggagc gtctgggtgg ccagcacatg ttccacctcc gacgtcccga taccctgggc
     4201 cagcgccccg aaggcgccgt gggtcgaggt gtggctgtcg ccgcagacga tggtcatgcc
     4261 gggctgcgtg cggccctgct cggggccgac cacatggacg atgccattgc ggatatcgcc
     4321 catcgggaag aactcgatcc cgtagtcctt gacgttgcgc tccagcgtct ggagctgcag
     4381 gcgtgcctcc tcgtcggcga ccgccccgac gccgagcgcc tggccctcgg tgggcacatt
     4441 gtggtcggcg acggccagcg tccggtcggg ccggcgcacc ggccgcttgg cggccctcag
     4501 gcccgcgaag gcctgcggcg tggtcacctc gtggatcagg tgcaggtcga tgtagaagat
     4561 cgactcgcca tcctggtccg ccaccaggtg gctgtcccaa atcttgtcgt agagcgtctt
     4621 gccgggcatg gagcgcatgt aggtctgcga ccccgcgcac gtctagtgct gcgaggccgc
     4681 atttcggcgg ctgcggcgca agttccttcc gggcgcgaaa tcgcctctcc cccgagcgca
     4741 gcgaagagag ggagagggta gggagagggc ggctcggctt ggcggcattc ggaaggcggg
     4801 tcgaggaccc gctgttcctg ggtcacggct ggacccggag cggcggttgg gcgttctgcg
     4861 ccgccctctc cctaccctct ccctctcggc ttcgccgggg gagaggcggt gccgcttagg
     4921 cggccagtgc ggtgggttga tgcggcaggg cgccgaggcc ggccagcgcg gcggtcaggg
     4981 cctcgacgat cggggtgtgc ggctcggcgc caagccgcgc gaccagccgg ctgttgtcca
     5041 gcaacacggg ggtctcccag aggtaacgca tctccagcat ctcgcgcatc gtctcgttga
     5101 acggcgcgat ggcgcggata gcgaaccagg gcaggcggct gaccggcagc ttgcggccgg
     5161 cgacggcctc cagggcggcg accagttcgt cgccggtcag ggtctggccg cgcatgtgga
     5221 agacttcgaa ggccgccagg ttcgcctcgt cctgcgccaa ccggaccatg gtctcggcca
     5281 cgtcgggcag gtaggcccag cagtggggaa ccgacatcgg gccgggatag ctgaccgcgg
     5341 cgagcggctt gccgggtttc accagtccct gggccagcca gttgttcccg ggcttcgggc
     5401 cgatgaagtc gccgcagcgg acgatcagga cgcgcaggcc atcctccgac gcttcggcca
     5461 gccggcgctc catctgcacc cggatcgcgc ccttgcgggt cagcggcgtc tgcgccgagg
     5521 tctcggtcag gttcgggaag gcgtctgggc cgtagttgta gaccgtgccg gggaagaaca
     5581 gccgcgcgtc cgccgcccgc gccgcggcga tggcggcgtt cagcatcggc agctgcagcc
     5641 ccgcccagtt cttgtaaccg ggcggattgg cgccgtgcat caccaggctc acaccctcgg
     5701 cggcggccac cacgtcggcc tcgatcatgg cgtcgccctt cacccagtcc agacccggca
     5761 ggccaaaggc cctgtgcgcc gtctccgggt tgcggtgcag cgcccgcacg cgccagccgt
     5821 cggccagcag ccgctcggcc accgccccgc cgatcccgcc tgtcgcgccg atcaccagcg
     5881 ccagcctggt ttcgctgttc agagtcattt tcgtatctcc gcgttccttg accgagagat
     5941 gcgccgtccc cacctccaac agaattgccg attcctctgg aacaggtatt catccgcgta
     6001 tgcctggacc gaacgactgg gatctcttcc aaagcctgca cgcggtgctg gaggccggca
     6061 ccctgtcggc cgcggcgcgc ctgaggggcc ttacccagcc gacgctgggc cgccacatcg
     6121 agaccctgga acagcgcctc ggctcgccgc tcttcctgcg cagtccccgg ggtctgcagc
     6181 ccaccgacct cgcccgtgag ctcaagccgc acctgcacga catggccgcg gcggcgtctg
     6241 cggcggtgcg cgacgcctcc ggcgcggcca attcgctcgc cggttcgatc cgcatcacct
     6301 gtagcgagat cgtcggcgcc gaggtcctgc cgccgatcct gaccgagttc cgcgaggccc
     6361 accccggcat cgtcatcgag ctgatgatgt ccaacatcgt cgacgacctc tcgcgccgcg
     6421 aggccgacat cgccgtgcgc atggcgccgc cgacccagag cgcgctggtc gccaagaagg
     6481 tgggcgaggt cgaactgggc ttctacgcca cggccaaata cctcgaccgc cacggcgtcc
     6541 cggacagcat ggcgtcgttc gaggaccaca cgatcatcgg cttcgacggg ccggcgcgca
     6601 gtatccgcga cctggccggc atcaatattc cggtgagccg ggagaccttc gatttccgct
     6661 ccgacagcga cctggcccag ctggcggtga tgcgcgccga ctacggcatc ggggtctgcc
     6721 agccgaccat cgcgcgccgc cacgggctgg tgcggatcct gcccaacgtc actgtcttca
     6781 acctcggcgt ctggatcgtc atgcacgaga acctgcgcgc cagccgccgc atgcgcctga
     6841 tgttcgacca tctggtcgac ggcgtgaccg gctacatcag ggaaggccgc aacgggtgag
     6901 cgcaccctac gcgggcggct gcctctgcgg ccaggtccgc tggcgagcca ccgccgagcc
     6961 gatcaatgtg cgcctctgcc actgccgaaa ctgccagcgc gccaccggcg gccccttctt
     7021 cgcccgcgcc ctcttcaacg accccgatgt cgagcgcacc ggcgagacca cccgctgggc
     7081 ctcgtcccag cgcctgcacc gcctctcctg cgcccgctgc ggaaccccgg tcttcgccga
     7141 gccccaggac ggcccctgga tcgcggtctc gctcacgacc ctggacgatc ccacggcgct
     7201 ggcgccgggc tcgcacatct gggtgaccga gaagcgcgac tgggtccgca tcgacgacgg
     7261 cctgccgcag ttcccggaag gggcgtgaat cacctccccc gcgtagcggc gggaggggga
     7321 cccggctcac cacaatcaac gtagagtgag cgcaaaaact tgactcaccg ccatcctgta
     7381 tgttcttctt ttgttccatg tcgtgtcaac cagggaaacg ggcccgcgcg gaggccatgc
     7441 tgggcgagct cgccgagctt ggcctgatgg tggcgcgcga gctggcggta cggacgcgcg
     7501 agtgcgagga cgtggaccag accgtggcgc tggccggcgc cttccagaag gtctcccgcg
     7561 tggtgcgcct gaccgtggcg ctggacttca agctggggcg ggatgcggcg cgcgaggcgc
     7621 gggttgaggc ccgcgaggcc gaggcggcag aagctgaggc cgaccgacaa ggccgcctcg
     7681 aggccgcctg cgccgcgccc gggccaatcg cggcgcgcaa gacccgtgtc agcaacctgc
     7741 tcaaccgcct catctggaac gagtgcgagg gcgacagcga agactatgag gtgctgttcg
     7801 ac
//
LOCUS       DATAJL010000308         3099 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_18225,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000308 DATAJL010000000
VERSION     DATAJL010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3099
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18225"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            219..467
                     /locus_tag="VHN39_06030"
     CDS             219..467
                     /locus_tag="VHN39_06030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3297 family protein"
                     /protein_id="HEX2815929.1"
                     /translation="MPDSPSLPDRLATDPDSPFYDADILAMNVGVRFKGEDKTNVDEY
                     CVSEGWVKLAVGKTLDRRGKQLTVKLQGPVEPYFRDEG"
     gene            587..796
                     /locus_tag="VHN39_06035"
     CDS             587..796
                     /locus_tag="VHN39_06035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815930.1"
                     /translation="MFDLTVVAFDGRWILLDEAEGELGEFATKDEALKAASDFAILDQ
                     EPRHVLIQDDVGDWEETVVEPPRMH"
     gene            925..1155
                     /locus_tag="VHN39_06040"
     CDS             925..1155
                     /locus_tag="VHN39_06040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815931.1"
                     /translation="MPNFIWPALKRRDVGTAGALGRFIHWTGVILAGLCALLAVEFLV
                     EGWAMHLSRALLLIALALTFGTRALRYVLARE"
     gene            1207..1674
                     /locus_tag="VHN39_06045"
     CDS             1207..1674
                     /locus_tag="VHN39_06045"
                     /inference="COORDINATES: protein motif:HMM:NF012417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2815932.1"
                     /translation="MSDTPSDGWKHTGVRVVPGDQLGEVSATTPGMDRAVAIDRARMG
                     AQKLWAGTVHIHANAKTGAHHHGPLESVIYVVSGRARMRWGEALEFTAEAGPGDFIYV
                     PPFVPHQEINASSDEPLMCVLVRSDSDAVVVNLQIEPAEKPEGVAWIDPIHKA"
     gene            1722..2123
                     /locus_tag="VHN39_06050"
     CDS             1722..2123
                     /locus_tag="VHN39_06050"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HEX2815933.1"
                     /translation="MSIEASSARPTATELDILRILWDRGPSTVRDVHEALSAERPIGY
                     TGVLKFLQIMTGKGSVVRNEDQRAHVYETAEPPETTKQKVAGDLMRKVFAGSASQLVL
                     HALQDKRATPADIAEIRRMLDAYEAKERDEG"
     gene            2120..>3099
                     /locus_tag="VHN39_06055"
     CDS             2120..>3099
                     /locus_tag="VHN39_06055"
                     /inference="COORDINATES: protein motif:HMM:NF017390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M56 family metallopeptidase"
                     /protein_id="HEX2815934.1"
                     /translation="MTVLAAYAASLVPALGWTLAHFLWQGALVAVTLRFLLKTCATAR
                     ARHDLALAALVLMALLPVATFAWLKGDVQIVLVPAGFPGLDAGQGQGWETVAVAAWLA
                     GVAVLAVRTAGGLLLIERLRRGATPLPQAWAARCAALHRRMTGSLNVAFAQSEAIAAP
                     LVAGWLKPMVLIPAAALVRLPADQLEALILHELAHVRRLDAIANLIQSIVETALFYHP
                     AVWWVSQQVRIEREHCCDDLAVAAVEDPALYVSALQAIEAMRAAPYGVLAANGGDLKS
                     RAARILGLVSAPERPALSRTAAILILTAAGMALTHGAAVQAKPGEAPWVKA"
BASE COUNT          481 a         1070 c         1070 g          478 t
ORIGIN      
        1 ggtgatggaa agggttctga ggttcatcct ggcgtctccc ggcgcacggc gcgggcctca
       61 ttcgcgagac tctcacgtac cgactttcgg aatatacgcc ccgggcgcgg cgcccgccaa
      121 gacccccgcc acgcttgaac ctttcggccg cctgtgcgag gcggacgcac atgagcgaca
      181 caccttctga ccgaccgtcc ctgcccgaca gcccctcctt gccggacagc ccctccttgc
      241 cggacagact ggccaccgat cccgacagcc cgttctatga cgctgatatc ctggcgatga
      301 acgtcggcgt ccgcttcaag ggcgaggaca agaccaacgt cgacgaatac tgcgtctcgg
      361 agggctgggt gaagctggcg gtgggcaaga cgctggaccg gcgcggcaaa cagctgacgg
      421 tcaagctcca gggccccgtg gagccctact tccgcgacga aggctgaacg ctcttaacgt
      481 tctcgtgagg agaagtgtgc gcttctacct ggggctgcga ccatcggaca ccgcgaaatc
      541 agccggtgtt cggtgaaaca aggcgatccc ggggcaggag agcgcgatgt tcgatctcac
      601 ggttgtagcg tttgacgggc gctggattct cctcgacgag gccgaaggcg aactcggcga
      661 attcgccacc aaggacgaag ccctgaaggc cgccagcgac tttgcgatcc tcgaccagga
      721 gccgcgccac gtgctgatcc aggacgatgt gggcgactgg gaagagaccg tcgtcgaacc
      781 gccccggatg cactgaagaa atctgcggcg gcgtttcgtt gcgcggccgc cccgggctga
      841 aacagagcgg cccgactgag gccccgatcc tgcgcgagca aggctgacgc cgcatccggc
      901 cagcgacccc gcgggagata tccattgccg aatttcatct ggcccgccct caagcggcgc
      961 gacgtgggga ctgccggcgc gctcgggcgc ttcatccatt ggaccggggt catcctggcc
     1021 gggctctgcg cgctcctggc cgtggagttc ctggtggagg gctgggcgat gcatctcagc
     1081 cgcgccctgc tgctcatcgc gcttgccctg accttcggca cgcgggcgct gcgctacgtg
     1141 ctggcgcggg agtagcttgc caaggcgcgg cttgccaaag ggggaggcct gacgtttcct
     1201 tcgccgatga gcgacacccc ttccgacggc tggaaacata caggcgtccg cgtcgtgccg
     1261 ggcgatcagt tgggcgaggt cagcgcgacg acgccgggca tggaccgggc cgtcgccatc
     1321 gaccgggccc gcatgggcgc gcagaaactg tgggccggca cggtccacat ccacgccaac
     1381 gccaagaccg gcgcccacca ccacgggccg ctggagagcg tgatctatgt ggtctcgggc
     1441 cgcgcgcgga tgcgctgggg cgaggcgctg gaattcaccg ccgaggcggg gccgggggac
     1501 ttcatctatg tgccgccctt cgtgccgcac caggagatca acgcctcctc ggacgagccg
     1561 ctgatgtgcg ttctggtgcg cagcgacagt gacgcggtgg tggtgaacct gcagatcgag
     1621 ccggcggaga agcccgaggg cgtcgcctgg atcgacccga tccacaaggc ctgacaggcg
     1681 gtggattgac tcgacgaaat tcttcgtact aacttcttcg tatgagcatc gaggcctctt
     1741 ccgcgcggcc gaccgccacc gagctggaca tcctgcggat cctctgggac cggggcccgt
     1801 ccaccgtccg cgacgtgcac gaggcgctga gcgcggagcg gccgatcggc tacaccgggg
     1861 tgctcaagtt cctgcagatc atgacgggca agggctcggt cgtccgcaac gaggatcagc
     1921 gggcccacgt ctatgagacc gccgaaccgc cggagaccac caagcagaag gtggccggcg
     1981 acctgatgcg caaggtgttc gcgggctcgg ccagccagct ggtgctgcac gccctgcagg
     2041 acaagcgcgc gacgcccgcc gacatcgccg aaatccgccg catgctcgac gcctatgagg
     2101 ccaaggagag ggacgaagga tgactgtgct cgccgcctat gccgccagcc tggttccggc
     2161 gctcggctgg actctcgccc acttcctctg gcagggcgcg ctggtcgcgg tgaccttaag
     2221 gttcctgctg aagacctgcg ccaccgcccg ggcgcggcac gacttggcgc tggccgccct
     2281 ggtgctgatg gcgctgctgc cggtggcgac cttcgcctgg ctgaagggcg acgtgcagat
     2341 cgtgctggtc ccggcgggct tcccgggcct cgacgccggc caggggcagg gttgggagac
     2401 cgtcgcggtg gccgcctggc tcgcgggcgt cgccgtcctg gcggtccgca cggccggcgg
     2461 gctcctcctg atcgagcgcc tgcgccgtgg cgcgacaccc ctgccacagg cctgggccgc
     2521 acggtgcgcc gcgctgcacc ggcgcatgac cggctcgctc aacgtggcct tcgctcagtc
     2581 cgaggcgatc gccgcgccgc tggtggcggg ctggctgaag cccatggtgc tgatcccggc
     2641 cgcggccctg gtgcggctgc cggccgacca actggaggcg ctgatcctgc acgagctggc
     2701 ccacgtgcgc cggctcgacg ccatcgccaa cctgatccag agcatcgtcg agaccgcact
     2761 gttctatcat ccggcggtct ggtgggtgag ccagcaggtc cgcatcgaac gtgagcactg
     2821 ctgcgacgac ctggccgtgg ccgccgtcga ggacccggcg ctctacgtct cagccctgca
     2881 ggcgatcgag gccatgcgcg ccgcgcctta cggcgtgctg gccgccaatg gcggtgacct
     2941 gaaaagccgc gcggcccgca ttctgggcct ggtgtcagcc ccggagcggc cggcgctctc
     3001 gcgcaccgcc gccatcctca tcctgaccgc ggcgggcatg gccttgaccc acggcgccgc
     3061 cgtccaggcc aagcccggcg aggcgccgtg ggtcaaggc
//
LOCUS       DATAJL010000309         8565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79809,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000309 DATAJL010000000
VERSION     DATAJL010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8565
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79809"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..621)
                     /locus_tag="VHN39_06060"
     CDS             complement(<1..621)
                     /locus_tag="VHN39_06060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalase-like domain-containing protein"
                     /protein_id="HEX2815935.1"
                     /translation="MNQSLELFPIGNCAASALIDEAGRYVWACAPRVDGDPFFSALLG
                     GDPADEDAQGLWSVEVEDRAKTHQAYLRNTPILRTEIADDCGGRLEIIDFCPRYRQFG
                     RTYRPLAFVRLIRALEGTPRIRIKLRPTIDYGAAPAETTTGSNHIRYVGGETTLRLTT
                     DGAVSHFQDERTFRLEEPIALFLGPDEGFDRDVTSTTLRMLRETTDY"
     gene            736..2154
                     /gene="pyk"
                     /locus_tag="VHN39_06065"
     CDS             736..2154
                     /gene="pyk"
                     /locus_tag="VHN39_06065"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEX2815936.1"
                     /translation="MFRARRARIVATLGPASRGVGKVRELAMAGADVFRVNFSHGTHA
                     DHARAIASVREAEGAVGRPLAVLADLQGPKLRLGEFADGQVKLKAGHALRLDLKSKPG
                     DASRIGVPHPEVFAALRTGALVLLDDGKVRLRVTGHGPDFADTVVEAGEMLSDHKGLN
                     LPGLAIPIPALTDKDRKDLAFALKEGVDWVALSFVQRASDMAELRSLVQGRANVLAKI
                     EKPSALEALDEILDLSQAIMVARGDLGVEMAPEEVPVVQKQLVRAARLRGIPVVVATQ
                     MLESMIHSPTPTRAEASDVAGAVYEGADALMLSAESAAGDYPLEAVSMMDRIITRVER
                     DPRWPELMRAEYPVEDADADALVAAARKAADAASTACLATFTTTGQTALRLARERPLQ
                     PTLALTPSLNTARKLALTWGVEARVVAETIDPEELTRVAVEQAVLTGLADPGQRILIL
                     AGLPMGSPGAANILRIAHAPLR"
     gene            complement(2158..4317)
                     /locus_tag="VHN39_06070"
     CDS             complement(2158..4317)
                     /locus_tag="VHN39_06070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEX2815937.1"
                     /translation="MDDLASSLDTPAALGETGEPRTPNRLYALKDRDTFLVADAFGDV
                     VGMGDGLFHNDTRILSRFQLLLGSHPPSLLSAAIAQDNVFFTSHTANQRLPFPGGPVA
                     PPGVLHIARKRFLWDDRLFERVAMVNYSRDEVIIPLVIEFDADFADMFEVRGLTRKQR
                     GYKHPAQTDGRSVALRYTGVDGLDRHSVITFSDPPFRLSEHRAEFMYPMGPESRLELY
                     IEIGMCPGPTPTRERFRSHAARARFSMRARRRHGARLRSSGRLFDEWMEKSRADLALL
                     TTEMETGPYPYAGIPWFSTTFGRDAIITAWQVLWIDPSLAKGVLSFLADHQASEVSAF
                     RDSAPGKIMHEARKGEMAALGEVPFGRYYGGVDTTPLFVALAGAYAERTGDMELIEML
                     WPHLEAAVGWIEAYGDTDGDGLIDYARGAESGLANQGWKDSHDSVFHSDGRFATGPIA
                     LVEVQGYAFAAYRAMAAMACRRGEEEQGAAWNAKAELIRQAVESRFWMEDDGFYAIAI
                     DGDGELCRVLASNPGHLLFAKLVAPQRGRKVAARLLSREFASGWGVRTLALGEARFNP
                     MSYHNGSVWPHDTALSVLGMSHYGERDGVVALTAALFETAASYEMRLPELLCGFPRQP
                     GEPPVAYPVACLPQAWAAGSVFMMLQACLGITVDGEAGTVTIVDPRLPIGIDRLRVDR
                     LRVGADLIHLAFERHGERITVTTGARPGVVRLKGPAR"
     gene            complement(4327..5385)
                     /locus_tag="VHN39_06075"
     CDS             complement(4327..5385)
                     /locus_tag="VHN39_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004370755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX2815938.1"
                     /translation="MKIAQVTPLYEAVPPRLYGGTERVVAHLTDALVELGHEVTLFAS
                     ADAVTKAKLVPVRDQAIRLDPAPLKSDLAAHLSQLAEVRRRADQFDVIHFHTDMSHFP
                     FFDTRARGTVTTLHGRLDLKDLAGVYQRWPQFPLVSISDDQRRPLPFANWAATVQHGV
                     AAELYRFSPQPQGYLAFLGRISPEKRPDRAIAIAKATGRRLKIAAKVDAADRTYFEEE
                     IEPLLGHPLIEFIGEIGDEEKSAFLGGAEALLFPIDWPEPFGLVMIEAMACGTPVIAY
                     ACGSVPEVVEDGLTGFIVRDHAEAVAAVGRLPGLDRLAVRRRFQERFSATAMAARYVE
                     LYGRLAVPREATLGLAAE"
     gene            5568..6248
                     /locus_tag="VHN39_06080"
     CDS             5568..6248
                     /locus_tag="VHN39_06080"
                     /inference="COORDINATES: protein motif:HMM:NF013356.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEX2815939.1"
                     /translation="MLEVFAGSDDLADAAADAIEAALQGALDARGRASLVATGGRSPG
                     PVYDRLAKTDLDWSHIAVTLSDERQVDADSPNSNARLLRERLFVGPAAQAQYLPLTDY
                     AEGVLRKLLPFDAVILGMGEDGHIASLIPGSPVMAHAMDPDGAALTAESPQGFGSPPV
                     ARITLTLSALLQSRAIFLLIAGEAKRQVIAQAASPGFGAGADLPVTAILSQAQVPVRI
                     FWAPEPSS"
     gene            6317..8128
                     /gene="edd"
                     /locus_tag="VHN39_06085"
     CDS             6317..8128
                     /gene="edd"
                     /locus_tag="VHN39_06085"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004456 - phosphogluconate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009255 - Entner-Doudoroff pathway through
                     6-phosphogluconate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HEX2815940.1"
                     /translation="MHPVTTEVTERIVERSRETRADFLARMEAARSSGTGRAKLSCAN
                     WAHAFAAESDADKKTMRNPTAPNVAIVSAYNDMLSAHQPLERFPAIIKAAAREVGATA
                     QYAGGVPAMCDGVTQGRPGMELSLFSRDVIAMATAVALTHDAFDAALMLGICDKIVPG
                     LTMGALSFGHLPVIFVPAGPMTSGVSNHQKAAVRALYAQGQATREELLDSEMASYHGP
                     GTCTFYGTANTNQMMMELTGLHLPGSAFVHPNTPLRDALVAAAPRRAVEIRDGSNAYT
                     PMSQVVDAKALVNALAGLLATGGSTNHTLHLIAMGRAAGIQITWEDFDDLSRITPLIA
                     RVYPNGSEDVNAFHAAGGMAFVVRQLLDAGLAHDDVMTVAGPGLRRFQTEPFLDAGKL
                     VWREGTATSLNPDILRPVDDPFQGHGGLRLLNGPLGRAVMKTSAVKHEHLVIEAPAVV
                     FEDQDDLLAAYHRGELNKDFVAVVRFQGPRANGMPELHSLTPPLGVLLDKGFKVALVT
                     DGRMSGASGKVPAAIHMTPEAADGGPLAYVRDGDVIRVDALKGTLEIMVATNELMARD
                     RAQGRPSQGGYGRELFGLMRRAAGPADAGACSLFEAA"
     gene            8131..>8565
                     /locus_tag="VHN39_06090"
     CDS             8131..>8565
                     /locus_tag="VHN39_06090"
                     /inference="COORDINATES: protein motif:HMM:NF014715.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004340 - glucokinase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005536 - glucose binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0051156 - glucose 6-phosphate metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HEX2815941.1"
                     /translation="MKPQYTGLVGDVGGTNARFALIDGEGRVRNLHIYPAANYASLND
                     IIADYLERTVGRKRPPRAVIAVAGPVLDGEIEFTNLDWRVSEGELLAQFEFEAVKLIN
                     DFAAQALACPLLGADSLRQLGPKLRGGADCPMVVLGAGTGFGV"
BASE COUNT         1296 a         3039 c         2950 g         1280 t
ORIGIN      
        1 atagtcggtg gtctcgcgca gcattctgag cgtcgtcgag gtgacgtctc ggtcgaagcc
       61 ctcgtccggg cccaggaaca gcgcgatcgg ctcctccagc cggaaggtcc gctcgtcctg
      121 gaagtggctg accgccccat cggtggtgag ccgcagcgtc gtctccccgc ccacatagcg
      181 gatgtgattg gagcccgtgg tggtttcggc cggcgccgcg ccgtagtcga tggtgggcct
      241 gagcttgatg cgaatccgcg gcgtgccctc cagcgcccgg atcagccgca cgaaggccag
      301 cggccggtag gtccggccga actggcggta gcgggggcag aagtcgatga tctccagccg
      361 cccgccgcag tcgtcggcga tctcggttcg gaggatcggg gtgttgcgca gataggcctg
      421 gtgggtcttg gcgcggtcct cgacctccac cgaccagagc ccctgggcat cctcatcggc
      481 tgggtcgccg cccagcaggg ccgagaagaa cgggtcgccg tccacccgag gcgcgcaggc
      541 ccagacgtag cggccggcct cgtcgatcag ggcgctcgcc gcgcagttgc cgatcgggaa
      601 cagttcgagg ctctggttca agcgggcatc ctgagcggtt gctggggaca agcgtccacg
      661 ctcggcgctt ttcggcgccg ctcatgatct aacgcgcctt gataagattg gctgcgggag
      721 cctaagcctc cactcatgtt ccgagcccgc agagcccgca tcgtcgccac cctcggtccc
      781 gccagccgcg gggtcggaaa ggtccgcgag ctggccatgg ccggcgccga cgtgttccgg
      841 gtcaatttca gccacgggac ccacgccgac catgcccgcg ccatcgcctc ggtgcgcgag
      901 gccgaggggg ctgtcggccg gccgctggcg gtgctggccg atctgcaggg gccgaagctg
      961 cggctcggcg agttcgccga tggccaggtg aagctgaagg ccggccacgc cctgcgcctc
     1021 gacctcaagt ccaagcccgg tgacgcctcg cgtatcggcg tgccgcatcc ggaggtgttc
     1081 gcggcgctgc gcaccggggc gctggtgctg ctcgacgacg gcaaggtgcg cctgcgggtc
     1141 accggccacg gccccgactt cgccgacacg gtggtcgagg ccggcgagat gctgtctgac
     1201 cacaagggcc tgaacctgcc gggcctggcg atcccgatcc cggcgctcac tgacaaggac
     1261 cgcaaggatc tggccttcgc gttgaaggaa ggcgtcgact gggtggcgct ctccttcgtg
     1321 cagcgcgctt ccgacatggc cgaactgcgg agcctcgtgc agggccgcgc caatgtgctg
     1381 gccaagatcg agaaaccctc ggcgctcgag gcgctcgacg agatcctcga cctgtcccag
     1441 gcgatcatgg tcgctcgggg cgacctgggc gtcgaaatgg cgccggagga ggtgccggtg
     1501 gtccagaaac agctggttcg cgccgcgcgc ctgcggggca tcccggtggt ggtggcgacc
     1561 cagatgctgg aatccatgat ccactcgccg acccccaccc gcgccgaggc ctccgacgtg
     1621 gccggcgcgg tctacgaggg cgccgatgcg ctgatgctct cggccgagag cgcggccggc
     1681 gactacccgc tggaagcggt ctcgatgatg gaccgcatta tcacccgcgt ggagcgcgac
     1741 ccccgctggc ccgagctgat gcgcgctgaa tatccggtcg aggacgccga cgccgacgcc
     1801 ctggtggccg ccgcgcgcaa ggccgccgat gcggcctcca ccgcctgtct cgccaccttc
     1861 accaccaccg gccagacggc cctgcggctc gcccgcgagc ggccgctgca gccgaccctg
     1921 gcgctcaccc ccagcctcaa caccgcccgc aagctggcgc tcacctgggg tgtcgaggcc
     1981 cgcgtggtgg ccgagaccat cgatccggag gagctgaccc gcgtcgctgt ggaacaggcg
     2041 gtgctgaccg gcctcgctga ccccggccag cgcatcctga tcctggcggg cctgcccatg
     2101 ggctcccccg gcgcggccaa catcctgcgc atcgcccacg cgccgttgcg ttagcggcta
     2161 gcgcgccggc cccttcagcc gcaccacgcc cggccgcgcg ccggtggtca cggtgatccg
     2221 ctcgccgtgg cgctcgaagg caaggtggat gaggtcggcg ccgacccgca ggcggtctac
     2281 cctgagccgg tcgatgccga tcggcaggcg cggatcgacg atggtcacgg tcccggcttc
     2341 gccgtcgacg gtgatcccca ggcaggcctg caacatcatg aacaccgacc ccgccgccca
     2401 ggcctgcggc aggcaggcga ccggataggc caccggcggc tcgccgggct ggcgcgggaa
     2461 gccgcagagg agctccggca ggcgcatctc gtagctggcg gcggtctcga acagcgccgc
     2521 ggtcagcgcc acgaccccgt cgcgctcgcc atagtgcgac atgccgagca ctgagagcgc
     2581 ggtgtcgtgc ggccagaccg agccgttgtg gtagctcatc ggattgaatc gcgcctcgcc
     2641 gagcgccagc gtgcgcacgc cccagcccga ggcgaactcg cggctcagca ggcgcgcggc
     2701 caccttgcgc ccccgctgcg gcgccacgag tttcgcgaac aacaggtggc cagggttcga
     2761 cgcgagcacc cggcagagct ccccgtcgcc gtcgatggcg atggcgtaga agccgtcgtc
     2821 ctccatccag aacctgctct cgacggcttg gcggatcagt tcggccttgg cgttccaggc
     2881 ggcgccctgc tcctcctcgc cgcgccggca ggccatggcg gccatcgccc gataggccgc
     2941 gaaggcatag ccctgcacct cgaccagggc gatcgggccg gtggcgaacc ggccgtctga
     3001 gtgaaagacc gagtcatggc tgtccttcca gccctggttg gcgaggccgc tctcggcgcc
     3061 gcgggcatag tcgatcagcc cgtcgccatc ggtgtcgcca taggcttcga tccagccgac
     3121 ggcggcctcg aggtgcggcc agagcatctc gatcagttcc atgtcgccgg tgcgctcggc
     3181 ataggcgccg gccagggcca cgaacagcgg cgtggtgtcg accccgccat agtagcggcc
     3241 gaagggcacc tcccccagcg ccgccatctc acccttgcgg gcctcgtgca tgatcttgcc
     3301 cggggcggaa tcgcgaaacg ccgacacctc gctcgcctga tggtcggcca ggaaggacag
     3361 cacgcccttg gccagcgacg ggtcgatcca caacacctgc caggcggtga tgatcgcgtc
     3421 gcgcccgaag gtggtcgaga accacgggat gccggcatag ggataggggc cggtctccat
     3481 ctcggtggtc aggagcgcca gatccgccct ggatttctcc atccactcgt cgaacagccg
     3541 tcctgagctg cgcagccgcg ccccatgcct gcgccgcgcg cgcatggaga accgggcccg
     3601 ggccgcgtgg ctgcggaacc gctcgcgggt cggcgtcggc cccgggcaca tgccgatctc
     3661 gatatagagc tccagccggc tctccggccc catcgggtac atgaactccg cgcggtgttc
     3721 gctgagccgg aagggagggt cggagaaggt gatgacgctg tggcggtcca gcccgtcgac
     3781 gccggtgtag cgcagagcca ccgaccggcc atcggtctgc gccgggtgct tgtagccgcg
     3841 ctgtttccgg gtcaggccgc ggacctcgaa catgtcggcg aaatcggcgt cgaactcgat
     3901 gaccagcggg atgatcacct cgtcgcggct gtagttgacc atggcgacgc gctcgaacag
     3961 ccggtcgtcc cacaggaacc gctttcgcgc gatgtgcagc acgcccggcg gcgccaccgg
     4021 cccgcctggg aagggcagcc gctgattggc ggtgtgcgag gtgaagaaca cattgtcctg
     4081 ggcgatcgcc gccgacagca gcgacggcgg gtgcgacccc agcagcagct ggaaccgcga
     4141 cagaatgcgg gtgtcgttgt ggaacaggcc gtcgcccatc cccaccacat cgccaaacgc
     4201 gtcggccacc aggaaggtgt cgcggtcctt cagggcgtag agccggttgg gtgtgcgggg
     4261 ctcgccggtc tcgccgaggg ccgcaggcgt gtccagcgac gatgcgaggt cgtccatgcg
     4321 gctacctcat tcggcggcga ggcccagcgt cgcctcgcgg gggacggcca ggcgtccgta
     4381 gagctcgaca tagcgggccg ccatggcggt cgccgagaag cgctcctgga aacgccggcg
     4441 gaccgccagg cgatcgaggc ccggcaggcg gcccaccgcg gccacggcct cggcatggtc
     4501 tcgcacgatg aagccggtga ggccgtcctc gaccacctcc ggcacggagc cgcaagcata
     4561 ggcgatcacc ggcgtcccgc aggccatggc ctcgatcatc accaggccaa agggctccgg
     4621 ccagtcgatg gggaacaaca gcgcctcggc cccgcccagg aaagccgatt tttcctcatc
     4681 gccgatctcg ccgatgaact cgatcagcgg atggcctagc aggggctcga tctcctcctc
     4741 gaaataggtg cggtcggcgg cgtcgacctt ggcggcgatc ttcaggcgac ggccggtggc
     4801 cttggcgatg gcgatggccc ggtcggggcg cttttccggc gagatgcggc cgagaaaggc
     4861 gagatagcct tggggctgcg ggctgaagcg atagagctcc gcggccaccc cgtgctgcac
     4921 cgtggcggcc cagttggcga agggcagcgg ccggcgctgg tcgtcgctga tcgacaccaa
     4981 ggggaactgc ggccagcgct gatagacccc ggccaggtcc ttcaggtcca gccgcccgtg
     5041 cagggtggtg acggtcccgc gcgcccgagt gtcgaagaac gggaagtggc tcatgtcggt
     5101 gtggaagtgg atcacgtcga actggtcggc ccgccgacgg acctccgcaa gctgcgacag
     5161 gtgcgcggcg aggtccgact tcagcggcgc cggatccagc cggatcgcct gatcgcgcac
     5221 cggcaccagc ttggccttgg tcaccgcgtc ggcgctggcg aacagcgtca cctcatggcc
     5281 cagctccacg agcgcgtcgg taaggtgagc caccacccgc tcggtgccgc catacaggcg
     5341 cggcggcacg gcttcgtaga gcggggtgac ctgggcgatt ttcatggagg acctcacgca
     5401 ctggggaacc acgcgtggcg ccaaatcggc cgcagacagc ggtgacgtcc cacaccagga
     5461 tgggttatgt gcgagcgcgc ggttggttcc cggattacgc cgctatttct ggcgtagcac
     5521 tgatccgccg cagtttcgct cggcggactg cgctatgagc agcaggaatg ctcgaagtct
     5581 tcgcaggttc agacgatctc gccgacgctg cggccgacgc catcgaggcg gcgttgcagg
     5641 gcgcgcttga tgcgcgcggc cgcgcctcgc tggtcgctac cggcggccgt tcgccggggc
     5701 cggtctacga ccggctcgcg aagacggacc tcgactggtc gcacatcgcc gtcaccctct
     5761 cggacgagcg gcaggtggac gccgactcgc cgaactccaa cgcccggttg ctgcgcgagc
     5821 ggctgttcgt ggggccggcc gcccaggcgc aatatctgcc gctcaccgac tacgccgagg
     5881 gcgtgctcag gaagctgctg ccgttcgatg cggtgatcct gggcatgggc gaggacggcc
     5941 acatcgcctc gctgattccc ggcagtccgg tcatggccca cgcgatggat ccggacggcg
     6001 ccgccctgac cgcggaatcg ccccagggat tcggatcgcc gccggtggcg cggatcacgc
     6061 tcaccttgtc cgcgttgttg caaagccgcg ccatcttcct cttgatcgcc ggggaggcta
     6121 agcggcaggt gatcgcccag gcggccagtc ctggatttgg ggccggcgcg gaccttccgg
     6181 tcaccgccat ccttagccag gcgcaggtcc cggtcaggat attctgggcg cccgagccct
     6241 cgtcttgacg agggctccaa tttttcagtt gagcccgttt tctcaaaaac gggcggctaa
     6301 ctaggaaaga cgagccatgc atccggtcac gacggaagtc accgaacgga tcgtcgagcg
     6361 cagccgcgag acccgcgccg acttcctggc gcggatggag gccgcccgct cgtcggggac
     6421 cggccgtgcc aagctctcct gcgccaactg ggcccacgcc ttcgcggccg agagcgacgc
     6481 cgacaagaag accatgcgca atcccaccgc gcccaacgtc gccatcgtca gcgcctacaa
     6541 cgacatgctc tcggcccacc agccgctgga gcgtttcccg gcgatcatca aggccgcggc
     6601 ccgcgaggtc ggggccacgg cgcaatacgc cggcggcgtg cccgccatgt gcgatggggt
     6661 gacgcaaggc cgtccgggca tggagctctc gctcttctcc cgcgacgtga tcgccatggc
     6721 gacggccgtg gccctgaccc acgacgcctt tgacgccgcc ctgatgctgg gcatctgcga
     6781 caagatcgtg cccggcctga ccatgggcgc cctcagcttc ggccacctgc cggtgatctt
     6841 cgtccccgcc gggccgatga cctcgggcgt ctccaatcac cagaaagccg cggtccgcgc
     6901 gctctacgcg caagggcagg ccacgcggga agagctgctg gactcggaaa tggcctccta
     6961 ccacggcccc ggcacctgca ccttctacgg caccgccaac accaaccaga tgatgatgga
     7021 gcttacgggt cttcatctgc cgggatcggc tttcgtgcat cccaatacgc cgctccgcga
     7081 cgccctggtg gccgcggcgc ccaggcgggc cgtggagatt cgcgacggct ccaacgccta
     7141 cacgcccatg tcccaggtgg tggacgccaa ggccctggtg aatgcgctgg ccggcctgct
     7201 cgctaccggc ggctcgacca accacaccct gcacctgatc gccatgggcc gagccgccgg
     7261 catccagatc acctgggagg acttcgacga cctctctcgg atcacgccgc tgatcgcacg
     7321 cgtctatccc aacggctcgg aggacgtgaa tgccttccac gcggcgggcg ggatggcctt
     7381 cgtggtgcgc cagctgctgg acgccggcct cgcccacgac gacgtcatga ccgtggcggg
     7441 cccgggcctg cgccgcttcc agaccgagcc cttcctggac gccggcaagc tggtctggcg
     7501 cgaggggacg gcgacctccc tcaaccccga catcctgcgg cccgtcgacg atcccttcca
     7561 gggccacggc gggcttcgcc tgctgaacgg gcccctcggc cgcgcggtga tgaagacctc
     7621 ggcggttaag cacgagcacc tggtcatcga ggcgccggcg gtggtgttcg aggaccagga
     7681 tgatctgctg gccgcctatc atcgcggcga gctcaacaag gatttcgtcg cggtcgtccg
     7741 cttccagggc ccgcgcgcca acggcatgcc cgaactgcac agcctcactc cgccgctggg
     7801 cgtcctgctg gacaagggct tcaaggtggc gctggtcacc gacgggcgga tgtcgggcgc
     7861 ctcgggcaag gtgccggcgg cgatccacat gaccccggaa gccgccgacg gcgggccgtt
     7921 ggcctacgtc cgcgacggcg acgtgatccg ggtcgatgcg ctcaaaggga ctttggagat
     7981 catggtggcg accaacgagc tgatggcccg cgaccgcgcc cagggccggc cctcgcaagg
     8041 cggctatggc cgcgagctct tcggcctgat gcgccgcgcc gccggcccag ccgacgccgg
     8101 cgcctgctcc ctgttcgagg ccgcctgaac atgaagccgc agtacacggg cctggtcggc
     8161 gacgtcggcg gcaccaatgc ccgcttcgcc ctcatcgacg gcgagggccg cgtgcgcaac
     8221 ctgcacatct accccgctgc gaactatgcc tccctgaacg acatcatcgc cgactacctg
     8281 gagcggaccg tcggccgtaa gcgcccgccg cgcgccgtga tcgcggtggc cggccccgtg
     8341 ctcgacggcg agatcgagtt caccaacctc gactggcggg tctccgaggg cgagctcctg
     8401 gcccagttcg agttcgaggc ggtcaagctg ataaacgact tcgccgccca ggcgctggcc
     8461 tgtcccctgc tgggcgcgga ctcgctgcgc cagctgggtc cgaaactgcg cggcggcgcg
     8521 gattgcccga tggtcgtcct gggcgccggc accggcttcg gggtc
//
LOCUS       DATAJL010000310         4578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_79836,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000310 DATAJL010000000
VERSION     DATAJL010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79836"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2662
                     /locus_tag="VHN39_06095"
     CDS             <1..2662
                     /locus_tag="VHN39_06095"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family peptidase"
                     /protein_id="HEX2815942.1"
                     /translation="FWGDMTPFWGSTGAFYGDLNNFWGKTNPVVGTFAPDYLKVGDFW
                     TGTGGTWDHISADWGAVPTTGGDYSSVAAQLKGLIDSSRNFWGSAVAAKSGGTFDTTF
                     ANPLLAKYGINLSDPTSLSKLDATSRALFFLDWYDGLMNYSGTDHVDHWMKAINWTPT
                     LSLQNGAGTGTTIGILDMTVVGDATLTASIVKANGISTYTNGHGAAVASLIYGAHDGT
                     GVMGIAPNASVVAYNPFDATGTAGWTDITNGVFRLKDEGASVVNMSLGVPGTTFDQGW
                     NTVFSSTNLKTLLKNTVFVMAAGNEGVVQTNNIAWNLLNPAFIVVGSVDITGKISNFS
                     NQPGTACLTPLLGICAGDKLMNHFIVAPGELILVSDGHGGVVRETGTSFAAPQVTAAI
                     ALIQGRWPWLVNSPNDVANIILNSAKDLGAPGVDPVYGHGLLDVTAAMSPLDFNKLVW
                     YQVQNGQKTALTSKAAMSAYQTQNHQAWDASGAYFTVFEPVGLTTQRDFNIPLSSKLV
                     GQSVASPGNSQQMFQSYLLSRMNGWAGVSSGKSGFASASGYDGFAAVSMPVGGKWGAD
                     MTLTIAPRDKRQGFQDEGPDYQSGLKVQGERASLTFGYGDGAPALAAKTGFTQAADYD
                     SERGGANPLLGLASGGGYAGWSYDVTHRLQFSAGIMERSDRRDSQNLPGLTRTDSGAA
                     SYQAGVELLGLSYAATDHVTLNGSYTHLHEASGLLGIQSLNPEDFRGGSTTDGFSLGA
                     NWAIGPHLSVMATGTLAHTRQGDANQTLAVDANGLTSSSFEVGVQRTSLFTRGDRLQL
                     SVSQPMFVDRGHLNLTSVQVIDRTTGDLGVVTQNIDISGQRQLAGEALYGLPISGGHG
                     DVALFGRVETPPAAGQGQTYIAGARYRIRF"
     gene            2751..>4578
                     /locus_tag="VHN39_06100"
     CDS             2751..>4578
                     /locus_tag="VHN39_06100"
                     /inference="COORDINATES: protein motif:HMM:NF026288.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEX2815943.1"
                     /translation="MTSRGLAGAAIAAILLVTAASTQAQTAAPKAASQPASPFADKVA
                     AAKAAMMTDPHVALATSLEVLALAKGQPGADQAEHIATAQWLQGVSLVRLNRPDEAEP
                     VIAEGLATAAARVPNSKLHGDLIRARAELKEAKDDVQSALADLHAAYRVFGVAKQPRS
                     QAMALMDIGSIYQDAGDYPKVLEYYAQAADLYPADLALLITADNNIGDALKYQKKYAE
                     SVAEFSRALEIARSMKSPPLQAQVLGNLASAEIAWGRLDAAQRHLDEEQRLAAAYPGA
                     REQQPFIWGLEAQIELQRHQPRAAAQLLARTFQGVDLKTSPPPFRDFHETAYETFTQL
                     GDDQQALAHLRAFKRLDDEARRVAASTNAALMSAQFDFANQKTRIAQLKAGELQRDVA
                     LAKVRNAVSTGLTIGSLIVALLLAASFLWIRRSRNEVRAANGKLGEANFALEKALKAR
                     TEFLATTSHEIRTPLNGILGMTQVMLRERKLDPELREKIALVHGAGETMRALVDDILD
                     LAKIETDGVTLNRAELDLPQLCHETTRLWSERAKAKGLELTLDASEAPARIVEDAGRL
                     RQILFNLMSNALKFTEAGGVTLTARVEAGEAGEDLVLAVVDTG"
BASE COUNT          800 a         1627 c         1494 g          657 t
ORIGIN      
        1 gttctggggc gacatgacgc cgttctgggg cagcacgggc gccttctacg gcgacctgaa
       61 caacttctgg ggcaagacca atccggtcgt ggggaccttc gcgcccgact atctgaaggt
      121 cggcgacttc tggaccggca cgggcgggac ctgggatcat atctcggccg actggggggc
      181 ggttccgacc actgggggcg actacagttc ggtggccgcg caactgaagg gcctgatcga
      241 ctcctcgcgc aacttctggg gctcggcggt cgcggcgaag agtggcggca cgttcgacac
      301 caccttcgcc aatcccctgc tcgccaagta cggcatcaac ctcagcgacc ccacgtcgct
      361 gtcgaaactc gacgccacca gccgggcgct gttcttcctc gattggtacg acggcctgat
      421 gaactactcc gggaccgacc acgtcgatca ctggatgaag gcgatcaact ggacgccgac
      481 gctcagtttg cagaacggcg ccggcacggg aaccaccatc ggcatactgg acatgaccgt
      541 cgtgggcgac gcgacgctga cggccagcat cgtcaaggcc aacggcatct cgacctacac
      601 caacggccac ggggcggcag tggccagcct gatctacggc gcccacgacg gcaccggcgt
      661 gatgggcatc gcgcccaacg cctcggtcgt ggcctacaac cccttcgacg ccaccggcac
      721 cgccggctgg accgacatca ccaatggcgt attcaggctg aaggacgagg gcgccagcgt
      781 cgtgaacatg tcactgggtg tgcccggcac gaccttcgac cagggctgga acacggtctt
      841 ctccagcacc aacctgaaga cgcttctgaa gaacaccgtc ttcgtcatgg cggcgggcaa
      901 cgagggcgtc gtccagacca acaacatcgc ctggaacctg ctgaacccgg ccttcatcgt
      961 ggtgggttcg gtggatatca ccggcaagat ctccaacttc tcgaaccagc cgggcacggc
     1021 ctgcctgacc ccgctcctgg ggatctgcgc cggcgacaag ctgatgaacc acttcatcgt
     1081 cgcgcccggc gagctgatct tggtctccga cggccacggc ggcgtggtcc gcgagaccgg
     1141 cacttccttc gccgcgcccc aggtgaccgc agcgatcgcc ctcatccagg gccgctggcc
     1201 ctggctggtc aactcgccga acgacgtggc caacatcatc ctgaactcgg ccaaggacct
     1261 cggcgcgccc ggcgtcgacc cggtctacgg tcacggcctg ctcgacgtca cggccgccat
     1321 gtcgccgctc gatttcaaca aactggtttg gtaccaggtc cagaacggcc agaagaccgc
     1381 gctgaccagc aaggcggcga tgtcggccta ccagacccag aaccaccagg cctgggacgc
     1441 ctcgggcgcc tacttcacgg ttttcgaacc ggtcggcctc acgacccagc gcgacttcaa
     1501 catcccgctc tcgagcaagc tcgtcggcca gtcggtcgcc tccccaggca attctcagca
     1561 gatgttccag tcctacctgc tgagccggat gaacggttgg gccggcgtct cgagcggcaa
     1621 gagcggattt gcgtccgcct cgggttatga cggcttcgcc gccgtcagca tgccggtggg
     1681 cggcaagtgg ggcgccgaca tgacgctcac catcgcaccg cgagacaaac gccagggctt
     1741 ccaggacgaa ggtccggact atcagtcggg cctgaaggtc cagggcgagc gggcctcgct
     1801 gactttcggc tacggcgatg gcgccccggc gctcgccgcc aagaccggct tcacccaggc
     1861 cgccgattac gacagcgagc gcggcggggc gaaccccctg ctgggcctgg cctcgggcgg
     1921 cggctacgcc ggctggagct acgacgtcac ccatcggctg caattctccg ccgggattat
     1981 ggaacgcagc gaccgccgcg actcccagaa cctgccgggc ctgacccgca ccgatagcgg
     2041 ggcggccagc tatcaggccg gtgtcgagct cctgggcctc agctacgcgg ccaccgacca
     2101 cgtcaccctc aacgggtcct acacccacct gcacgaggcc tcgggcctcc tgggcatcca
     2161 gtcgctgaac ccggaagact tccgaggcgg ctcgaccacc gacggcttca gcctcggcgc
     2221 gaactgggcg atcgggccgc acctgtcggt gatggccacc ggcaccctgg cgcacacccg
     2281 ccagggcgac gcgaaccaga cgctggcggt ggacgccaac ggcctgacct cgtcatcctt
     2341 cgaggtcggc gtgcagcgga ccagcctctt cacgcgtggc gaccggctgc agctcagcgt
     2401 ctcccagccg atgttcgtcg accgcggcca cctgaacctc acctcggtgc aggtaatcga
     2461 ccgcacgacc ggcgacctgg gcgtggtgac ccagaacatc gacatctccg gccagcggca
     2521 gctcgcgggc gaggcgctct acggcctgcc gatctccggc ggtcacggcg acgtggccct
     2581 gttcgggcgt gtcgagacac cgccggccgc gggccagggc cagacctaca tcgccggcgc
     2641 gcgctaccgg atccggttct gatcgaatga ggacccgagc accgctaggt tccttagggg
     2701 cactttaaga ggtcacccgc tagtctggcg ccatgcgttg ggggcgcccc atgacttcga
     2761 gaggactggc aggcgccgcc atcgcggcga tcctcctggt aactgccgcc tccacccagg
     2821 cgcagaccgc ggctccgaag gccgcgagcc agcccgccag tcccttcgca gacaaggtcg
     2881 ccgcggccaa ggccgccatg atgaccgacc cgcatgttgc gctggcgacg tcgctggagg
     2941 tcctcgcgct ggccaagggt cagccgggcg ccgatcaggc cgagcacatc gccaccgccc
     3001 agtggctgca gggcgtatcg ctggtgcgcc tgaaccgccc ggacgaggcc gagccggtga
     3061 tcgccgaggg cctggccacg gcggcggcgc gagttcccaa ttccaagctg catggcgatc
     3121 tgatcagggc gcgcgccgag ctgaaggaag ccaaggacga cgtccagtcg gcgctcgccg
     3181 acctccacgc cgcctaccgc gtgttcggcg tggccaagca gccgcgcagc caggccatgg
     3241 cgctgatgga catcggctcg atctaccagg acgccggcga ctacccgaag gtgctggaat
     3301 attacgccca ggccgccgac ctctatccgg ccgacctcgc gctcctgatc accgccgaca
     3361 acaacatcgg cgatgcgctg aaatatcaga agaaatatgc cgagtccgtc gccgaattca
     3421 gccgcgcgct ggagatcgcg cgcagcatga agagcccgcc actgcaggcc caggtcctgg
     3481 ggaacctggc gtccgccgag atcgcctggg gccgcctcga cgcggcccag cgccacctgg
     3541 acgaggagca gcggctggcg gccgcctacc cgggggcgcg cgagcagcag ccgttcatct
     3601 ggggcctcga ggcgcagatc gagctgcagc gccatcagcc gagggccgca gcccagctcc
     3661 tggcgcgcac cttccagggc gttgacctga agacctcgcc cccgccgttc cgcgacttcc
     3721 acgagacggc ctacgagacc tttacgcagc ttggcgacga ccagcaggcg ctggcgcacc
     3781 tcagggcttt caagcggctg gacgacgagg cccggcgcgt ggcggcctcg accaacgcgg
     3841 ccctgatgtc ggcccagttc gacttcgcca accagaagac gcggatcgcc cagctgaagg
     3901 ccggcgagct gcagcgcgac gtggcgctgg ccaaggttcg caacgcggtg agcacagggc
     3961 tgacgatcgg ttcgctgatc gtggccttgc tgctggcggc gagcttcctg tggatccgcc
     4021 gcagccgcaa cgaggtgcgc gcggccaacg gcaagctcgg cgaggccaat ttcgcgctgg
     4081 aaaaggccct gaaggcccgc accgagttcc tggccaccac cagccacgag atccgcacgc
     4141 cgctgaacgg catcctgggc atgacccagg tgatgctgcg cgaacgcaag ctcgatccgg
     4201 agctacgcga aaagatcgcc ctggtgcatg gcgcgggcga gaccatgcgc gccctggtgg
     4261 acgacatcct ggaccttgcc aagatcgaga cggacggcgt caccctgaac cgcgccgagc
     4321 tcgacctgcc gcaactctgc cacgagacca cgcggctgtg gagcgaacgg gcgaaggcca
     4381 aggggctgga gctgacgctg gacgcgtccg aggcgccggc caggatcgtc gaggacgccg
     4441 ggcgcctgcg ccagatcctg ttcaacctga tgtcgaacgc gctgaagttc accgaggccg
     4501 gcggggtcac cctgaccgcg cgggtcgagg cgggagaggc tggcgaggac ctggtgctgg
     4561 ccgtggtcga caccggca
//
LOCUS       DATAJL010000311         2261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92566,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000311 DATAJL010000000
VERSION     DATAJL010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92566"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..843)
                     /locus_tag="VHN39_06105"
     CDS             complement(<1..843)
                     /locus_tag="VHN39_06105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IB"
                     /protein_id="HEX2815944.1"
                     /translation="MARDLSDQTVPAADLHAAHLTYVSDLDPGIRRRKAGHGFNYLDA
                     DGKPVTSEATLDRIRKLVIPPAWTDVWIAPTERGHIQAIGRDAKGRKQYRYHERWREV
                     RDGGKYDRLIAFGHALPRLRAQVEHDLARRGLPREKVLAAVVRVMEITLIRVGNEEYA
                     KANKSFGLTTLRDRHAKVGAAKAVFEFQGKSGKIHTTAFSDRRLARIVKACQDLPGQR
                     LFQYLDDDGPRHAVESADVNAYLREALGEDFSAKDFRTWAGTLAAARALVTLPECADQ
                     AEATK"
     gene            914..1735
                     /gene="rlmJ"
                     /locus_tag="VHN39_06110"
     CDS             914..1735
                     /gene="rlmJ"
                     /locus_tag="VHN39_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HEX2815945.1"
                     /translation="MNYRHAFHAGNFADLVKHAALLQLLARLAAGPGPLSVIDTHAGR
                     GLYDLTGVEAKKSGEAEAGIARLMAAADAPVEFAPLTAAVRKLNGGGPARRYPGSPWL
                     IAEALRPGDSYLACELRPDEHAALRELMKARRGVRTLCADGYDAAMAQTPAVGRALVL
                     IDPPFERADDYSRIVETLAAVAQRNRTPTALVWLPLKDLETFDGFLRDLEDGVAAPML
                     VAETRMRPLIDPLKMNGCALVLLGAPDGMAAELQAVCGWTAATLGQGGESRVYAL"
     gene            1835..>2261
                     /locus_tag="VHN39_06115"
     CDS             1835..>2261
                     /locus_tag="VHN39_06115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815946.1"
                     /translation="MSFAPETETLAKPEAMLRVPVGLASPLWGLFAGAAVSASAWWWM
                     TRWTRPQNLEALFGAAEAAVEPEIAVLAAPIAETVEAVIEATPKPVLETLVEATPEPV
                     MEAVAEAAPEPLTEAIVEAPVEAVVEAAVEETPVAPVLEA"
BASE COUNT          321 a          753 c          830 g          357 t
ORIGIN      
        1 cttcgtcgcc tcagcctgat cggcgcattc gggcagcgtg acgagcgcgc gggcggcggc
       61 cagggtcccg gcccaggtgc ggaaatcctt ggcggagaaa tcctcgccaa gcgcctcgcg
      121 caggtaggcg ttgacgtcgg cgctctccac ggcgtgccgc gggccgtcgt catcgaggta
      181 ctggaagagc cgctgacccg gcaggtcctg gcaggccttg acgatgcggg ccagcctgcg
      241 gtcgctgaag gccgtggtgt gaatcttgcc gctcttgccc tggaactcga acaccgcctt
      301 cgcggcgccg accttggcgt ggcgatcgcg cagggtggtc aagccgaagc tcttgttggc
      361 tttggcgtat tcctcattgc cgacccggat gagcgtgatc tccatgaccc ggacgacggc
      421 ggccagcacc ttttcacgag gcaggccgcg gcgggccagg tcgtgttcca cctgggcgcg
      481 cagccggggc agggcgtggc cgaaggcgat cagccggtcg tacttgccgc cgtcgcgcac
      541 ctcgcgccaa cgctcgtgat agcggtactg cttacggcct ttcgcgtcgc ggccgatggc
      601 ctggatgtga ccgcgctcgg tgggcgcgat ccagacgtcg gtccaggcgg gcgggatgac
      661 gagcttgcgg atgcggtcga gcgtcgcctc gctggtgact ggcttgccgt cggcgtcgag
      721 gtagttgaaa ccgtggccgg ctttgcggcg gcggatgccg gggtcgagat cgctgacgta
      781 ggtcagatgg gcggcgtgca ggtcggcggc tgggacggtc tggtcggaaa ggtccctggc
      841 cacggcggcg ccctccactc aagctgcggc aacgtggtat gcgcggccac ggttcctgag
      901 agacgagaaa gccttgaact accgccacgc cttccacgcc gggaatttcg ccgacctggt
      961 gaagcacgcc gcgctccttc agctgctggc gcggctggcc gccgggccgg ggccgctcag
     1021 cgtgatcgac acccacgccg gacgcggact gtacgacctg accggcgtcg aggcgaagaa
     1081 gtccggcgag gcggaggccg ggatcgctcg gctgatggcg gcggcggacg cgccggtgga
     1141 gttcgcgccg ctgacggcgg cggtgcggaa actcaacggc ggcggaccgg cgcggcgcta
     1201 ccccggctcg ccctggctga tcgccgaggc tttgcggccc ggcgacagct atctggcctg
     1261 cgaactgcgg cccgacgaac acgcggccct gcgggaattg atgaaagccc gccgcggcgt
     1321 ccgcaccctt tgcgccgacg gctatgacgc ggcgatggcg cagacgccgg cggtcggccg
     1381 cgccctggtg ctgatcgatc cgccgttcga gcgggccgac gactacagcc gcatcgtcga
     1441 gaccctggcg gcggtggctc agcgtaaccg cacgcccacg gcgctcgtct ggctgccgct
     1501 gaaggacctc gagaccttcg acggcttcct gcgcgacctg gaggatgggg tcgcggctcc
     1561 gatgctggtc gccgagacgc ggatgcggcc gctgatcgac cccttgaaga tgaacggctg
     1621 cgccctggtg ctgctcggcg cgccggacgg catggcggcg gagctgcagg cggtctgtgg
     1681 ctggacggca gcgaccctgg ggcagggcgg cgagagccgg gtctacgccc tctaaacggg
     1741 cgcccgatca caatttgtgt gtcatggatc tttcgcactt gcgagatcat ctcgcatggt
     1801 aatgttgcgt tgcaccatca agccggagat ccccatgtcc ttcgcccccg aaaccgaaac
     1861 cctcgccaag ccggaagcca tgctgcgcgt ccccgtgggc ctggcctcgc cgctctgggg
     1921 cctgttcgcc ggcgccgcgg tcagcgcctc agcctggtgg tggatgaccc gctggaccag
     1981 gccgcagaac ctggaagccc tgttcggcgc ggccgaggcc gccgttgagc cggagatcgc
     2041 cgtgctggcg gccccgatcg ctgaaaccgt cgaggcggtg atcgaagcga cgcctaagcc
     2101 ggtgctcgaa accctcgtcg aagcgacgcc cgagccggtg atggaagctg tcgccgaggc
     2161 cgcgcctgaa cccttgaccg aggctatcgt cgaggcgccg gtcgaggcgg tcgtcgaggc
     2221 ggcggtggag gaaaccccgg tcgcaccggt ccttgaggcc c
//
LOCUS       DATAJL010000312         3294 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105504,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000312 DATAJL010000000
VERSION     DATAJL010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3294
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105504"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /locus_tag="VHN39_06120"
     CDS             <1..757
                     /locus_tag="VHN39_06120"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2815947.1"
                     /translation="GLVMNGSRPPLSDWGWVAFNGFSGLLAVHAGYIVVRGWRDDLLE
                     GRRRLRALLMGVITLFVMLQVVAGFFFRADHASPWRLLTIGQIGGGLQLALLNLAGAM
                     LFLQARPSIFGGSRRAEALPDARAEAADRLLLGKLETFMADGGWRREGLTIGAVAQAL
                     ETPEHRLRRLINRRLGHRNFADFVNGHRIEAARRRLSDPAEARTTVAAIAFDLGYGSL
                     GPFNRAFRTATGETPTEWRRRALQASPNLQEAV"
     gene            844..1656
                     /locus_tag="VHN39_06125"
     CDS             844..1656
                     /locus_tag="VHN39_06125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEX2815948.1"
                     /translation="MHSFLHDIPHIWLGNLVVDLRRYVIFAVAVWLTLWVALRIPLRG
                     RKIRDESPPPRQMAVEFLYSVRSIALFSTAGIGIALLQRTGLYRLSDMAGHWGPVWFV
                     TSLILMIIGQDAWVYWTHRWMHRPRWFRTFHRRHHKSYNPSPFTAYSFDLGEAALMVS
                     FVVLWPLIVPTPWPVTGLFMLHQIFRNTLLHAGYELTPARADGRPWFGWLTTTTHHDL
                     HHAQAGWNFAPWFTWWDRWLGTEHPEYLARYAAAVRHTGPSPTPIEVEPQQA"
     gene            1997..>3294
                     /locus_tag="VHN39_06130"
     CDS             1997..>3294
                     /locus_tag="VHN39_06130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEX2815949.1"
                     /translation="MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRETR
                     SADRKDEGIEAVFKSVFPIKDFNERAVLEYVSYEFEEPKYDVEECVQRDMTYAAPLKV
                     KLRLIVFETDEETGARSVKDIKEQDVYMGDIPLMTEKGTFIVNGTQRVIVSQMHRSPG
                     VFFDHDKGKTHASGKLLFAARVIPYRGSWLDFEFDAKDVVFVRIDRRRKLPATTFLMA
                     LGMDGEEILSTFYATLSYAKRKEKKGAAGGWATEYQPERWRGVKPEFALIDAQTGEEV
                     APAGTKISARNAKKFADAGLKTLLLAPEALTGKYLAKDLVNFQTGEIYAEAGDELNPE
                     LLAALEEQGFDTLEVLDIDDVTVGAYIRNTLRVDKNSIREDALFDIYRVMRPGEPPTL
                     DSAEAMFNSLFFDSERYDLSAVGRVKMNMRLDLHAPDTQRT"
BASE COUNT          541 a         1161 c         1034 g          558 t
ORIGIN      
        1 tggccttgtg atgaacgggt cgcggccgcc gctgtccgac tggggctggg tggccttcaa
       61 cggcttctcg ggccttctgg ccgtgcacgc gggctacatc gtcgtgcgcg gctggcgcga
      121 tgacctcctg gaaggccgcc gccgcctcag ggcgctgttg atgggcgtga tcaccctgtt
      181 cgtcatgctg caggtggtgg cgggcttctt ctttcgggcc gaccacgcca gtccctggcg
      241 gctgctgacc atcggccaga tcggcggcgg cctgcagctg gcgctgctga atctggccgg
      301 cgcgatgctg ttcctgcagg cccggccctc gatcttcggc ggctcgcgtc gcgccgaggc
      361 cttgcccgac gccagggcgg aggcggccga ccggctgctg ctgggcaagc tggaaacgtt
      421 catggccgac ggcggctggc ggcgcgaggg cctgacgatc ggcgccgtgg cgcaagccct
      481 ggagacgccg gagcaccggt tgcgacggct gatcaaccgc cggctcggcc accgcaactt
      541 cgccgacttc gtgaacggcc accggatcga ggccgcgcga cgccgcctct ccgaccccgc
      601 cgaggcccgc accacggtgg cggccatcgc cttcgatctg ggctacggct cgctcggccc
      661 cttcaaccgc gccttccgaa ccgccaccgg cgagaccccg accgagtggc gcaggcgcgc
      721 gctgcaggcc tcgccgaatc tgcaagaggc tgtctgattt cgaaatcggc gaggcttttc
      781 cggccccggc gagacgtctg accctgagcc ctggcttcct tgccgcaacg caaggagcct
      841 ctgatgcaca gttttctgca cgacattccg cacatctggc tggggaacct ggtggtcgac
      901 ctcaggcgct acgtgatctt cgccgtggcc gtctggctga ccctgtgggt cgcgctgcgc
      961 atccccctgc gcggccgcaa gatccgggat gaaagtccgc cgccacggca gatggctgtc
     1021 gagttcctct actccgtccg ttcgatcgcg ctgttctcaa cggccggcat cggcatcgcg
     1081 ctcctgcagc gcaccggcct ctaccggctt tccgacatgg ctggccattg gggaccggtc
     1141 tggttcgtga ccagcctgat cctgatgatc atcgggcagg atgcctgggt gtactggacg
     1201 caccgctgga tgcatcggcc gcgctggttc cgcaccttcc accgccgcca ccacaagagc
     1261 tacaacccct cgccgttcac cgcctacagc ttcgacctgg gcgaggccgc gctgatggta
     1321 agcttcgtgg tgctgtggcc gctgatcgtg ccgacgccct ggccggtgac gggcctcttc
     1381 atgctgcacc agatcttccg caacaccctg ctgcacgccg gctacgagct gaccccggcc
     1441 cgcgccgacg ggcgaccctg gttcggctgg ttgaccacca ccacccacca tgatctgcac
     1501 cacgcccagg ctggctggaa cttcgcgcca tggttcacct ggtgggaccg ctggctgggc
     1561 accgagcacc cggaatacct cgcccgctat gccgccgcgg tgcgtcacac gggtccttcg
     1621 ccaaccccta tcgaggtcga accccagcag gcctaggcgg cgcattcggc ctggcggcgc
     1681 cggatatcct ccggcaccgc catttttctt tggggagggg gcttcccctt tcacgggaaa
     1741 agtcttatct cggctgcttc gcgaaaaccc ccgattcccg tgaagcgccc gcatgcgctc
     1801 ccgagagccg gggtttcgtg cgttaaatgt cccgaggcat ggtccgtcgc cctccgacca
     1861 tgcgaagggg cgcccctgac gatacgaggg gccttccagc gtccggcttt cccgccagcg
     1921 gggaggttga gggtggacgc aggaccataa atatcgacgc ggggattccg ttccccgacg
     1981 tcctcaaggg acacaaatgg cgcaatcctt caccggtaag aagcggatcc gtaagtcgtt
     2041 cggccgcatc cctgaagccg tgcagatgcc gaacctcatc gaggttcaac gctcctccta
     2101 cgaacagttc ctgcagcgcg agacgcgctc ggccgatcgt aaggacgagg gtatcgaggc
     2161 ggtcttcaaa tcggtcttcc cgatcaagga cttcaacgag cgcgccgtgc tcgaatacgt
     2221 ctcctacgag ttcgaggagc cgaagtacga cgtcgaggaa tgcgtccagc gcgacatgac
     2281 ctacgcggcg cccctgaagg tgaagctgcg cctcatcgtg ttcgagaccg acgaggaaac
     2341 cggcgcccgc tccgtgaagg acatcaagga gcaggacgtc tacatgggcg acatcccgct
     2401 gatgacggag aagggcacct tcatcgtcaa cggcacccag cgcgtcatcg tctcccagat
     2461 gcaccgctcg cccggcgtgt tcttcgacca cgacaagggc aagacccacg cctcgggcaa
     2521 gctgctgttc gccgcccgcg tgatccccta ccgcggctcg tggctcgact tcgagttcga
     2581 cgccaaggac gtggtgttcg tccgcatcga ccgccgccgc aagctgcccg ccaccacctt
     2641 cctgatggcc ctgggcatgg acggcgaaga gatcctctcg accttctacg cgaccctctc
     2701 ctacgccaag cgcaaggaga agaagggcgc tgccggcggt tgggcgaccg agtaccagcc
     2761 ggaacgctgg cgcggtgtga agccggaatt cgcgctgatc gacgcccaga ccggcgagga
     2821 agtcgcgccc gccggcacca agatcagcgc ccgcaacgcc aagaaattcg ccgacgcggg
     2881 tctgaagacc ctattgctgg cccccgaggc gctgaccggc aagtacctgg ccaaggatct
     2941 ggtcaacttc cagaccggcg aaatctacgc cgaggccggc gatgagctga acccggagct
     3001 gctggcggcg ctggaggagc agggcttcga caccctggaa gtcctcgaca tcgacgacgt
     3061 caccgtcggc gcctacatcc gcaacaccct gcgggtggac aagaactcga tccgcgaaga
     3121 cgccctgttc gacatctacc gcgtcatgcg tcccggcgag ccgccgacgc tcgacagcgc
     3181 cgaggcgatg ttcaactcgc tgttcttcga cagcgagcgc tacgacctct cggcggtcgg
     3241 tcgcgtcaag atgaacatgc gcctcgacct ccatgcgccc gacacccagc gcac
//
LOCUS       DATAJL010000313         5242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_18296,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000313 DATAJL010000000
VERSION     DATAJL010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5242
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18296"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..332)
                     /locus_tag="VHN39_06135"
     CDS             complement(<1..332)
                     /locus_tag="VHN39_06135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815950.1"
                     /translation="MNLRMDRRRALVVGLGAWAGSAVTAHAAADPLVGAALYADVKAY
                     AALGEHRTGTPGDNATTVWMERALQAAGYAVERQGFDYPVFDLVRSDVTVGGRAIEGF
                     PYWTPGTTT"
     gene            complement(401..661)
                     /locus_tag="VHN39_06140"
     CDS             complement(401..661)
                     /locus_tag="VHN39_06140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815951.1"
                     /translation="MKTPAKIVTAAALMLALALPAAGPAAAKGCLKGAVVGGVAGHFA
                     GRHTVLGAAAGCAVGHHLAHKKAVEDRRAAQAQAQQQAPAHH"
     gene            1017..1598
                     /locus_tag="VHN39_06145"
     CDS             1017..1598
                     /locus_tag="VHN39_06145"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815952.1"
                     /translation="MTFKTLMVAAAFALGVSAPASAALLDGNSVTAHLHSLDTLGNTT
                     NGVSDTQTAPATSLVAGAFLSATYADKQITVLEDVASSSTTFFTSNFFTGTPFVTNGL
                     EFFSPLAGLGFTSVTIDPTSTISGAGVTFSANLIDLNLAGLTFNFGDTVVLDLNGGPA
                     PGVPEPATWALILAGFGLAGTGLRVARRRRAAA"
     gene            complement(1602..2396)
                     /locus_tag="VHN39_06150"
     CDS             complement(1602..2396)
                     /locus_tag="VHN39_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2815953.1"
                     /translation="MPETIKLTEPAPGVAVVAFNRPEVANALSTQMGEELAEAWTALA
                     ARSSGEGADLRCVILTGEGRHFQAGADLKERNGMTDETWALQHKVFEAMVRAQLSVPV
                     PVIAAVNGAAMGGGCEMTLACDFAYASETARFGLPEVGLGIMPGLGGTQLLRRCAGER
                     RAIELLTTGRPFTAAQALEYGVVNGVTAPEALMETVLAVAAEIAAKAPLSVRALKHVV
                     REAHSLDLAAAMEMELSAYNRLFKTADRREGVASFNEKRTPAFRGE"
     gene            complement(2397..3560)
                     /locus_tag="VHN39_06155"
     CDS             complement(2397..3560)
                     /locus_tag="VHN39_06155"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2815954.1"
                     /translation="MPKDADQTFPEIREAVRKLCARFPGAYWRALDREREYPTAFVTA
                     LTEAGFLSVLIPEAYGGSGLGLGAGAAVLEEIHRSGGNGGACHAQMYTMGVVLRHGSP
                     AQKDAYLPKVASGELRLQAFGVTEPDAGTDTTRITTFARRDGDHYVVSGKKLWISRAE
                     HSDLMVLLCRTTARADAAKPSDGMSVLLVDMRDAVGNGLTIRPVRTMLNHATTELFFE
                     DLKVPVANLIGEEGKGFRYILDGMNAERILIAAECIGDARFFIDRASAYAREREVFGR
                     PIGENQGVQFPIARAYVQMTAANLMVEKACALFEAGEPCGTEANMAKLVASEASWYAA
                     DMALQTHGGFGFAEEYDIERKFRETRLYQVAPISTNLILSHVATHVLDLPKSF"
     gene            3622..>5242
                     /locus_tag="VHN39_06160"
     CDS             3622..>5242
                     /locus_tag="VHN39_06160"
                     /inference="COORDINATES: protein motif:HMM:NF009233.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2815955.1"
                     /translation="MTDLSYVNGASTRPLLGQTIGAAFDAACAAHAGQMALISRHQKI
                     RWTYAQMKERVDALAAGLLALGLEPGDRIGVWAPNCAEWALTQFATAKAGLILVNINP
                     AYRLSEVEYALNKVGCKALVTAVAHKTSEYLHMLRELAPELSSARPGALQATRLPALR
                     LVITLGEQEHAGALAFHQACDAGTPADMERLAQIGPGLQFDDAVNIQFTSGTTGFPKG
                     ATLSHHNILNNGYFVGEAIRLAPGERLCIPVPLYHCFGMVMGNLGCVTHGATMVYPSE
                     GFDPLAVLETVEAEGCEALYGVPTMFIAMLGHERFSHFNLTSLRTGIMAGSPCPIEVM
                     RQVIDRMHMPEVTIAYGMTETSPVSFQSAADDSLDHRVSTVGRIQPHLEVKIVDEAGR
                     IVPRGATGELCTRGYSVMIGYWDDPERTAEALDAAGWMHTGDLATLDAEGYGNIVGRI
                     KDMVIRGGENVYPREIEEFLYRHPKIQDVQVIGVPDPRYGEELCAWIRLAPGESADED
                     EIRAFCRGQIAHYKIPRYVRFVDEFPMTVTGK"
BASE COUNT          833 a         1827 c         1757 g          825 t
ORIGIN      
        1 gtcgtggtcc caggcgtcca gtagggaaag ccctcgatcg cgcgcccgcc cacggtcacg
       61 tcggaccgga ccaggtcgaa caccggatag tcgaagccct gccgctcgac ggcatagccc
      121 gcggcctgga gcgcgcgttc catccagacc gtcgtggcgt tgtcgccggg cgtgccggtg
      181 cggtgctcac ccagggccgc ataagccttc acgtcggcgt agagcgccgc gccgaccagc
      241 gggtcggcgg cggcgtgcgc ggtcacagcg ctcccggccc aggcgccgag ccccaccaca
      301 agcgcccgcc gccgatccat cctgagattc atgggatcag tctgctacgg cgccgccgcc
      361 cagcgctatc ccctttccag ggaatcccgc cctgaggaat ttagtggtgc gcaggcgctt
      421 gctgctgagc ctgggcctgg gccgcgcgcc ggtcctcgac cgctttcttg tgcgccaggt
      481 ggtggccgac ggcgcagccc gccgcggcgc ccagcacggt gtggcggccg gcaaagtgac
      541 cggcgacacc gcccaccacc gcgcccttca ggcacccctt ggccgcggcg gggccggcgg
      601 cgggaagggc gagagccagc ataagcgcgg cggcggtgac gatcttcgcg ggggtcttca
      661 tgggggacat gtcctcaaaa gccaggtggc gacgctattc cgcgcccaag ctcgcgccaa
      721 gttaaggaac gcacatgtcc gccggcggct ccggttaccg gtcgcggcat ctggtggagc
      781 gctgtttccg cgtctgggac ctggccaagc ccagcaagtc ctggagagaa ttgaggacag
      841 gacgcaaact ggcgccgtca ctcgacaagg cggcggcgcg ggtcatccct gaaactcttc
      901 tactccaggt cgcgatggct caaatgaaca caactctaag gttgacgacc ccgcctaggt
      961 tctggactta atctatagcc gtcgttggac ggcaggggga cggcaggggg acggacatga
     1021 cgttcaagac actgatggtc gccgcggctt ttgccctggg cgtgtccgcg cccgccagcg
     1081 ccgccttgct ggacggaaat tccgtgacgg cccacctcca ttcgctcgac acgctgggga
     1141 acacgaccaa cggggtgtcc gacacgcaga cggcgcccgc caccagcctc gtggcgggag
     1201 cctttctcag cgccacctac gcggacaagc agatcacggt gctggaggac gtcgcgagtt
     1261 cctcgaccac cttctttacg tcgaacttct ttaccggcac gcccttcgtg accaacggtc
     1321 tggagttctt cagccccctc gccggtcttg gattcaccag cgtcacgatc gatccgacgt
     1381 ccacgatcag tggggccggc gtcacgttca gcgccaacct catcgacctg aacctcgccg
     1441 gattgacctt caactttggg gacaccgtcg tgctcgatct gaacggcggc cctgcgccgg
     1501 gcgtgcctga acctgcgaca tgggccctga tactggccgg cttcgggctc gccggaaccg
     1561 gactgcgcgt cgcgcggcgg cggcgcgcgg ccgcctgacc cctactcgcc cctgaacgcc
     1621 ggggtccgct tctcgttgaa actggccacg ccctcgcggc ggtcggcggt cttgaagagg
     1681 cggttgtagg ccgaaagctc catctccatg gccgcggcca ggtccagcga atgggcctcg
     1741 cggaccacat gcttcagggc ccggacggag agcggcgcct tggcggcgat ctcggcggcg
     1801 acggccagca ccgtctccat cagggcctcg ggcgcggtca cgccattgac gacgccatac
     1861 tccagcgcct gggccgcggt gaacgggcgg ccggtggtca gcagttcgat ggcccgccgc
     1921 tccccggcgc agcggcgcag gagctgggtg ccgcccaggc ccggcatgat ccccagcccc
     1981 acctcaggca ggccgaagcg cgcggtctcc gacgcatagg cgaagtcgca ggcgagcgtc
     2041 atctcgcagc cgccacccat ggccgcgcca ttgaccgcgg cgattaccgg cacgggcacc
     2101 gagagctggg cgcggaccat ggcctcgaag accttgtgtt gcagggccca ggtctcatcc
     2161 gtcatgccgt tgcgttcctt gaggtccgcg ccggcctgga agtgacggcc ttcgccggtg
     2221 aggatcacgc agcgcaggtc cgccccctct cccgaggatc tggcggccag cgcggtccag
     2281 gcctcggcca gctcctcgcc catctgcgtc gagagcgcgt tggcgacctc cgggcggttg
     2341 aaggcgacga cggccacgcc cggcgcgggt tcggtgagct tgatggtttc gggcatctaa
     2401 aatgacttcg gcaggtccag cacgtgggtg gccacgtggg agaggatgag gttcgtggag
     2461 atcggcgcca cctggtagag gcgggtttcg cggaacttgc gttcgatgtc gtactcctcg
     2521 gcgaagccaa agccgccgtg ggtctgcaag gccatgtcgg cggcgtacca ggaggcctcg
     2581 gaggccacca gcttggccat gttggcctcc gtgccgcagg gctcgccggc ctcgaagagg
     2641 gcgcaggcct tctccaccat caggttggcg gcggtcatct ggacataggc ccgggcgatg
     2701 ggaaactgga cgccctggtt ctcgccgatg gggcggccga acacctcgcg ctcgcgcgcg
     2761 taggcgctcg cgcggtcgat gaagaacctg gcgtcgccga tgcattcggc cgcgatcagg
     2821 atccgctcgg cgttcatgcc gtcgaggatg tagcggaagc ccttgccctc ttcgccgatc
     2881 agattcgcca ccggcacctt cagatcctcg aagaagagct cggtggtggc gtggttgagc
     2941 atggtgcgga ccggccggat ggtcaggccg ttcccgaccg cgtctcgcat atcgaccaag
     3001 agcacgctca tcccgtccga cggcttggcc gcgtcggccc gggctgtcgt gcggcagagg
     3061 agcaccatca gatcggagtg ctcggcccgg ctgatccaca gcttcttgcc cgagaccaca
     3121 tagtggtcgc cgtcgcgccg ggcgaaggtg gtgatgcggg tggtgtcggt gccggcgtcg
     3181 ggctcggtga cgccgaaggc ctgcagccgc aattcgccgc tcgcgacctt gggcagatag
     3241 gcatctttct gcgccggact gccgtgccgc agcaccacgc ccatggtgta catctgcgca
     3301 tgacaggcgc cgccattgcc gccggagcgg tggatttcct ccagcaccgc agcgcccgcg
     3361 cccaggccca ggcccgagcc gccgtacgcc tccgggatca gcaccgagag gaagcctgcc
     3421 tcggtcaggg ccgtcacgaa cgcggtggga tactcgcgct cacggtcgag cgcccgccag
     3481 taggcgccgg ggaagcgcgc gcagagcttg cgcacagcct cgcggatttc tgggaaggtc
     3541 tggtcggcgt ccttgggcac gccaacctct ctgccacgcg caaggctgga gatcgaccgg
     3601 caaaggtggt catctggcgc catgaccgac ctgagctatg tgaatggtgc gagcaccagg
     3661 cctctgctgg gccagacgat cggggctgcc ttcgatgccg cctgcgccgc ccacgccggc
     3721 cagatggcgc tgatctcgcg ccaccagaag atccgttgga cctacgcgca gatgaaggag
     3781 cgcgtcgacg cgctggccgc cggcctgctg gcgctgggcc tcgagcccgg cgaccggatc
     3841 ggcgtctggg cgcccaattg cgcggaatgg gcgctcaccc agttcgccac cgccaaggcg
     3901 ggcctgatcc tggtcaacat caacccggcc tatcgcctga gcgaggtcga atacgcgctg
     3961 aacaaggtgg gctgcaaggc gctggtcacc gccgtcgcgc acaagaccag cgaatatctg
     4021 cacatgctgc gcgagctcgc cccggagctg tcgtcagccc gtccgggggc gcttcaggcc
     4081 acccgcctgc cggccctgcg gctggtcatc accctgggcg aacaagagca tgcgggcgcc
     4141 ttagccttcc atcaggcctg tgatgccggc acgcccgccg acatggagcg cctggcgcag
     4201 atcgggccgg gcctgcagtt cgacgacgcc gtcaacatcc agttcaccag cggcaccacc
     4261 ggctttccca agggcgccac gctcagccac cacaacatcc tcaacaacgg ctacttcgtc
     4321 ggcgaggcga tccggctggc gcccggggag cggctctgca tcccggtgcc gctctaccat
     4381 tgcttcggca tggtgatggg caacctgggc tgcgtcaccc atggcgcgac catggtctat
     4441 ccctcggagg gcttcgatcc gctggctgtg ctggagaccg tcgaggccga gggatgcgag
     4501 gcgctctacg gcgtccccac catgttcatc gccatgctgg gccacgagcg gttcagccac
     4561 ttcaatctga cgtccctgcg gaccggcatc atggcgggct cgccctgccc gatcgaggtg
     4621 atgcgccagg tgatcgacag gatgcacatg cccgaggtga ccatcgccta cggcatgacc
     4681 gagacctcgc cggtgagctt ccagtcggcc gccgacgaca gcctcgatca ccgggtctcg
     4741 accgtgggcc gcatccagcc gcacctggag gtgaagatcg tcgacgaggc cggccgcatc
     4801 gtgccgcgcg gcgccacggg cgaactctgc acccgcggct attcggtgat gatcggctac
     4861 tgggacgatc cggaacgcac agccgaggcg ctggacgccg ccggctggat gcacaccggc
     4921 gacctggcca ccctcgacgc cgaaggctac ggcaacatcg tcggccgcat caaggacatg
     4981 gtcatccgcg gcggcgagaa cgtctatccg cgcgagatcg aggaattcct ctaccgccac
     5041 ccgaaaatcc aggacgtcca ggtgatcggc gtccccgacc cgcgctacgg cgaggaactc
     5101 tgcgcctgga ttcgcctggc gcccggcgag agcgccgacg aggacgagat ccgcgctttc
     5161 tgccgcggcc agatcgccca ctacaagatc ccgcgttacg tgcgcttcgt ggacgagttc
     5221 ccgatgaccg tcaccggcaa ga
//
LOCUS       DATAJL010000314         7180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5427,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000314 DATAJL010000000
VERSION     DATAJL010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7180
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5427"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /locus_tag="VHN39_06165"
     CDS             <1..673
                     /locus_tag="VHN39_06165"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HEX2815956.1"
                     /translation="PRNFYFPELPNIEYADRETFPWLERVEAATGDIRAELLRVLKED
                     GAAFSPYVEAEPNRPSFDDKGLVGNPDWSAFYLWKAGAPVAENVARCPATMAALADAP
                     LCRIPGRTPSILFSLLRPGMHIAPHNGFMNARYICHLPLIVPEGCAMRVGSQTRAWTE
                     GRACVFDDSIEHEAWNRNPDHLRVVLIFDIWRPELAPAECEFVSSVLQAVDAFGAGEP
                     AAPAP"
     gene            complement(772..3789)
                     /locus_tag="VHN39_06170"
     CDS             complement(772..3789)
                     /locus_tag="VHN39_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815957.1"
                     /translation="MKIQNTRERLLASSMICGAAFLGLSATSAYAAAAADAANGEVSE
                     IVVTGTRIPSPNLTSIAPVTTVGNADIKAQGITRMEDITNSLPQVFAGQGSSITNGST
                     GAATVDLRGLGPNRTLVLIDNRRLNPGDPTARTSVSADLNFVPAALVERVDVLTGGAS
                     ATYGADAVAGVVNFIMLKNFEGVRIDAQYSGYQHTQHSGAIEDVVRTAAANATDPRQF
                     ALPAHSLWDGEGSEVSMVLGVNAPDGKGNITAYATYRQNNQILEGARDFSACGLNSGT
                     PNFAEFGCGGSGTAFPARVGSFLVDPTTFNTFRARNPATDVFNFAPQNFFVRPDERYA
                     LGAFAHYEIAPWATAYMDTMFMDDRSTAQIGAGGIFAGTFSINCANPLLSAQERHSLA
                     AVGGGFCDAPTLPNAVFTGTVARRLVGGEAGGRITDLRHTDYRIVLGLKGDLGKNWNY
                     DGYLQYGSVEFNSQQGGNLNSNRITQALNVVGTAANPVCAPGADAGCVPLNIFTAQTI
                     SPAALKFLAANSFATANTNERVASIALTGKLGDYGLKSPMASDGVGVALGAEYRREHL
                     DSTADFLAANGLVDGNGAASPPVNGGFDVYELFGEARVPLVNDMPLAKEIALELGYRF
                     SNYSSVGNTNTYKVSGEWEVIDGLRFRAGYNRAVRAPNVIELFAPQNVALDGTQDPCA
                     GLSAANPLVATCASVFHLTTAQVLAIEKNPASQYNGEFGGNPNLKPEISDTYTAGVVW
                     QPSFVPGLNISVDYFNIKVDQFIGNIGPNLIINQCVNTANPFFCNLVHREPGNNSLFI
                     DPTGFVVDTTLNTGSLKTTGVDLNVNYRTDLSTLGLGDNGSVSVSMVGTWLNELDTQP
                     LPGGPTYNCKGLYGTVCGVPAPEWRHKLRVTWNTPYAYGDWVKSLSFSAQWRYFGKVG
                     LDAFNSDPQLNNPGIQYESDRAFASRSYLDLTANFTVHNNLNFRVGVNNVFDKDPPLT
                     GVNCTAGFCNGNTFPQVYDALGRFVFVGLSADF"
     gene            complement(4106..7117)
                     /locus_tag="VHN39_06175"
     CDS             complement(4106..7117)
                     /locus_tag="VHN39_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2815958.1"
                     /translation="MRNHSMRERLLASSMICGAAVLALSTSRAAAAAADAATGEVSEI
                     VVTGTRIPSPNLTSIAPVTTVGNADIKAQGVTRIEDITNSLPQVFAGQGSMVSNAATG
                     SATVDLRGLGPNRTLVLINNRRLMPGDPTLRISGSAADLNFIPASLVERVDVLTGGAS
                     ATYGADAVAGVVNFIMLKNFEGVRLDAQYSGYQHTNHEGAIQDVLRAAAANATDPSQF
                     KPPPHSLFDGEGSEVSLTLGVNAPDGKGNITAYATYRQNNPILQGARDFSACTLNSSD
                     TFADAGCGGSGTAFPARAGGFLVDPTTFNTFRPRNAAQDVFNFGPANFFVRPDDRYSL
                     GAFAHYEIAPWADAYMDTMFMDDRSTAQIAAGGIFAGTFSINCANPLLSAQERSLLPS
                     TTGATCAANPAGIFTGTVARRLQANEAGGRQTDFRHTDYRIVIGLKGDLGKNWNYDGY
                     LQFGSVQVSNEQTGNLNSNRINQALNVVAGPTGPVCAPGADAGCVPLNIFTAQSISPA
                     ALKFLDATSFNSGNTTERVASLAFTGKLGDYGIKIPTASEGVGVALGAEYRREHLDST
                     SDFLSQNGLVNGNGGAAPPVNGGFDVYELFGEARVPLVNDMPLAKEIALELGYRFSNY
                     SSVGNTNTYKVSGDWEVIDGLRFRAGYNRAVRAPNVIELFAPPNVQLDGTQDPCAGLT
                     AANPLVATCASVFHLTTAQVLAIEKNPAAQYNGQVQGNTNLRPEISDTYTAGVVWSPS
                     FVQGLNVSLDYFNIKVNHFIAPVGADLIITQCLTTLNPSFCNLVHREPGNNSLFLDTT
                     GFIDDQTKNIGSLSTTGVDLNLNYRTSLSTLGLGDNGSISASLVGTWLDSLVTQPLPG
                     GPSYDCKGLEGTVCGVPAPEWRHKLRLTWNTPYSYGDWFKSLSFSAQWRYFGRVSLDA
                     FSSNPQLNNPAIQYETDRTFSSRSYLDLTANFTVHNNLNFRVGVNNVFDKDPPITGSS
                     NCPAGFCNGGTYPQVYDALGRFVFVGLSADF"
BASE COUNT         1162 a         2163 c         2578 g         1277 t
ORIGIN      
        1 gccgcggaac ttctatttcc cggagctgcc aaacatcgaa tacgccgacc gcgaaacctt
       61 cccctggctg gagcgcgtcg aggcggcgac gggggacatc cgcgccgaac tgctccgcgt
      121 gctgaaggaa gacggcgccg cgttctcgcc ctatgtcgag gccgaaccga accgtccctc
      181 attcgacgac aagggcctgg tcggaaaccc ggactggagc gccttctatc tgtggaaagc
      241 cggggccccg gtggcggaga acgtggcgcg gtgcccggcg accatggccg ccttggctga
      301 cgcgccgctc tgccggattc caggacgcac gccctcgatc ctgttctctc tcctgcggcc
      361 cggaatgcac atcgcgccgc acaacggctt catgaacgcg cgctacatct gccacctgcc
      421 gctgatcgtg ccggagggct gcgccatgcg ggtgggctcg cagacgcggg cctggacgga
      481 gggccgggct tgcgtgttcg acgacagcat cgagcatgag gcctggaacc ggaaccccga
      541 ccatttgcgc gtcgtgctga tcttcgacat ctggcgcccg gagctcgctc cggccgagtg
      601 cgaattcgtc agctcggtcc tgcaggcggt ggatgccttc ggggccggcg aaccggccgc
      661 gccggcccct taagacacct gcgcgctcac gccgtcgatt ggaggacggc ccatagaaaa
      721 agggcggcgg attgctccgc cgcccctctt cgaagtcttg ctgtctgagg cctagaagtc
      781 ggccgacaga ccgacgaaca cgaaccggcc cagggcgtcg tagacctgcg ggaaggtgtt
      841 gccgttgcag aagccggcgg tgcagttgac gcccgtcagc ggcggatcct tgtcgaacac
      901 gttgttcacg ccaacccgga agttcaggtt gttgtggacc gtgaagttcg ccgtcaggtc
      961 gaggtagctc cgcgacgcga acgcccggtc gctctcgtac tggatgccgg ggttgttcag
     1021 ctgcgggtcg ctgttgaacg cgtccagacc gaccttgccg aagtagcgcc actgggccga
     1081 gaagctcagg ctcttcaccc agtcgccata ggcgtagggc gtgttccagg tgacgcgcag
     1141 cttgtggcgc cattccggag ccggaacgcc gcacaccgtg ccgtagaggc ccttgcagtt
     1201 gtaggtcggg ccgcccggca ggggctgggt gtccagctcg ttgagccacg tgccgaccat
     1261 gctgaccgaa acgctgccat tgtcgccgag accaagcgtc gacaggtcgg tgcgatagtt
     1321 gacgttcaga tcgacgccgg tggtcttcag cgaaccggtg ttcagcgtgg tgtccacgac
     1381 gaagccggtg ggatcgatga acagcgagtt gttgcccggc tcgcggtgca cgaggttgca
     1441 gaagaacggg ttggcggtgt tgacgcactg gttgatgatc aggttcggcc cgatattccc
     1501 gatgaactga tcgaccttga tgttgaagta gtcgaccgag atgttcaggc ccgggacgaa
     1561 gctcggctgc cagacgacgc ccgcggtata ggtgtcgctg atttccggct tcaggttcgg
     1621 gttgccgccg aactctccgt tgtactggct ggcgggattt ttctcgatcg ccaggacctg
     1681 ggcggtggtg aggtggaaga cgctggcgca agtggccacc agcgggttgg ccgccgacag
     1741 gccggcgcag ggatcctgag tgccgtccag ggcgacattc tgcggcgcga acagttcgat
     1801 gacgttgggc gctcggacgg cgcggttata gccggcgcgg aagcgcaggc cgtcgatcac
     1861 ttcccactca cccgacacct tgtaggtgtt ggtgttgccg accgaggaat agttcgagaa
     1921 gcggtacccc agttcgagcg cgatctcctt ggccagcggc atgtcgttga ccagcggcac
     1981 gcgggcctcg ccgaacagtt cgtagacgtc gaagccgccg ttgaccggcg gagaggccgc
     2041 gccgttgccg tccaccaggc cgttggccgc caggaagtcg gctgtcgagt cgaggtgctc
     2101 gcggcggtac tcggcgccca gcgcgacacc caccccgtcc gaggccattg ggctcttcag
     2161 cccgtagtcg ccgagcttgc cagtaagggc gatgctggcg acgcgctcgt tagtgttggc
     2221 ggtggcgaag ctgttggcgg ccaggaactt gagcgcggcg ggcgagatgg tctgcgcggt
     2281 gaagatgttc aggggcacgc agcccgcgtc ggcgccgggg gcgcagaccg ggttggccgc
     2341 ggtgccgacc acgttcagcg cctgggtgat ccggttggag ttgaggttgc cgccctgctg
     2401 cgagttgaac tcgacggagc cgtattgcag gtagccgtcg tagttccagt tctttcccag
     2461 gtcgcccttc aggccgagca cgatccggta gtccgtgtgg cgcaggtcgg tgatgcgccc
     2521 accggcctcg ccgcccacca ggcgccgcgc gacggtcccg gtgaagacgg cgttcggcag
     2581 ggttggcgcg tcgcagaacc cgccgccgac ggcggccaga gagtggcgct cctgagcgct
     2641 cagcagcgga ttggcgcagt tgatcgagaa ggtgccggcg aagatgccgc cggccccgat
     2701 ctgggcggtc gagcggtcgt ccatgaacat ggtgtccatg taggccgtgg cccagggcgc
     2761 gatctcgtag tgggcgaagg cgcccagcgc gtagcgctcg tcaggacgca cgaagaagtt
     2821 ctgcggcgcg aagttgaaga cgtcggtggc ggggttgcgc gcccggaagg tgttgaaggt
     2881 ggtcgggtcg accaggaagc tgccgacgcg cgccgggaaa gccgtgccgg agccgccgca
     2941 gccgaactcg gcgaaattgg gcgtgcccga gttcaggccg caggccgaga aatcccgcgc
     3001 cccttccaga atctggttgt tctggcggta ggtggcgtag gcggtgatgt tgcccttgcc
     3061 gtccggcgcg ttgacgccga gcaccatgct gacttcggag ccttcgccgt cccacaggct
     3121 gtgtgcgggc aaggcgaact ggcgcgggtc ggtcgcattc gccgcagccg tgcggaccac
     3181 gtcctcgatg gcgcctgaat gctgggtgtg ctggtagccg gagtactggg cgtcgatccg
     3241 cacgccctcg aagttcttca gcatgatgaa gttgacgacg ccggccacgg cgtcggcgcc
     3301 gtaggtcgcg gacgcaccgc cggtcagcac gtcaacccgc tccaccaggg cggcgggcac
     3361 gaagttcagg tcggccgaga cgctggtgcg tgcggtcggg tcgcccgggt tcaggcggcg
     3421 gttgtcgatc agcaccaggg tgcggttggg gcccaggccc cgcaggtcga ccgtggcggc
     3481 gccggtggag ccgttggtga tcgaggagcc ctgacccgcg aacacctgcg gcagggagtt
     3541 ggtgatgtcc tccatgcggg tgatgccctg cgccttgatg tcggcgttgc cgaccgtggt
     3601 cacgggcgcg atggaggtca ggttcggcga cgggatccgg gtcccggtca ccacaatttc
     3661 ggagacctcg ccgttggcgg cgtcagccgc ggcggccgcg taggccgagg tggcggacag
     3721 ccccaggaag gccgcgccgc agatcatcga ggaggccagc aggcgctccc gggtgttttg
     3781 gattttcaag gtcaactcct ccagcggccg cgctcgcatc ggagccggcc agctccccac
     3841 aaaaaacgag tcccaggacg cctgttggag accccggtta cgctggagtt acttagcgct
     3901 gcagtaagtg gtcaacgtgc atatcggtgc gtgacaggta atgtccgata catgtctcga
     3961 aatggacaca aatagcgaag taatcgcatt tgactataat ctagtcgaca gaaactctat
     4021 ctggcgaact ctcgccgccg gggaccgacc tggaaggcgg gcggcggcgc gagccgccgc
     4081 ccattctcca gggtgtccag cgcccctaga agtctgcgct caggcccacg aacacgaaac
     4141 ggccaagcgc gtcatagacc tgtgggtagg tcccgccgtt gcagaagccg gcggggcagt
     4201 tcgaagagcc ggtgatcggc ggatccttgt cgaagacgtt gttcacgccg acccggaagt
     4261 tcaggttgtt gtggacggtg aaattcgccg tcaggtcgag atagctccgc gacgagaagg
     4321 tgcggtcagt ctcgtactgg atggccgggt tgttcagctg tggattgctg ctgaacgcgt
     4381 cgagcgacac cctgccgaaa tagcgccact gcgccgagaa gctcaggctc ttgaaccagt
     4441 cgccgtaaga gtaaggcgtg ttccaggtca ggcgcagctt gtgacgccat tccggagccg
     4501 gcacgccgca gaccgtgccc tccaggccct tgcagtcata ggatgggccg ccggggagcg
     4561 gctgggtgac cagcgagtcg agccaggtgc cgaccaggct ggccgagatc gagccattgt
     4621 cgccaagccc gagcgtcgac aggctcgtcc ggtagttgag gttgagatcc acgccggtgg
     4681 tcgacagcga tccgatgttc ttcgtctggt cgtcaatgaa gccggtcgtg tccaggaaca
     4741 gcgagttgtt gccgggttct cggtggacca gattgcagaa gctcggattc agggtcgtca
     4801 ggcattgggt gatgattagg tccgcgccga cgggtgcgat gaagtggttc accttgatgt
     4861 tgaagtagtc gagactgacg ttcagtcctt ggacgaagct cggcgaccag acgacaccgg
     4921 ctgtgtaggt gtcgctgatt tccggcctca ggttcgtgtt gccctgcacc tgcccattgt
     4981 attgcgccgc agggttcttc tcgatggcca ggacctgggc cgtggtcagg tggaagacgc
     5041 tggcgcaggt ggccacaagc gggttggccg cggtgaggcc ggcacaggga tcctgcgttc
     5101 cgtcgagctg aacattcggg ggcgcgaaca gttcgatgac gttgggcgct cggacggcgc
     5161 ggttgtagcc tgcgcggaag cgcaggccgt cgatgacctc ccagtcgccc gacaccttgt
     5221 aggtgttggt gttgccgacc gaggaatagt tcgagaagcg gtatcccagt tcgagcgcga
     5281 tctccttggc cagcggcatg tcgttgacca gcggcacgcg ggcctcgccg aacagttcgt
     5341 agacgtcgaa gccgccgttg accggaggcg cggcgccgcc gttgccgttc accaggccgt
     5401 tctgcgaaag gaagtcggag gtcgagtcca ggtgctcgcg gcggtactcc gcgccgagcg
     5461 cgacgccgac gccttcggag gccgtcggga tcttgatccc gtagtcgccg agcttgccgg
     5521 tgaaggcgag gctcgccacg cgttcggtcg tgttgccgct gttgaagctc gtggcgtcca
     5581 ggaacttcag cgcagccggc gatatcgact gggccgtgaa gatgttgagc ggcacgcagc
     5641 cggcgtcggc gccgggcgcg cagaccgggc cggttggtcc ggcgaccaca ttaagcgcct
     5701 gattgatccg gttggagttc aggttgccgg tctgctcatt agagacctgg accgagccga
     5761 actgcaggta gccgtcgtag ttccagttct tgcccaggtc gcccttcagg ccgatcacga
     5821 tccggtagtc cgtgtggcgg aagtccgtct ggcgcccacc cgcctcgttg gcctggaggc
     5881 gtcgcgcgac ggtgcctgta aatatgcccg cggggtttgc cgcgcaggtc gcgccggtgg
     5941 tcgaggggag caagctgcgc tcctgtgcgc tgagcagcgg gttggcgcag ttgatcgaga
     6001 acgtgcccgc gaaaatgccg ccggcggcga tctgggcggt ggagcggtcg tccatgaaca
     6061 tggtgtccat gtaggcgtcg gcccagggtg cgatctcgta gtgggcgaag gcgccgaggc
     6121 tgtagcgatc gtcgggacga acgaagaaat tggccggacc gaagttgaag acgtcctgtg
     6181 cggcgttgcg cggccggaac gtattgaagg tcgttgggtc gaccaggaag ccgccggccc
     6241 gcgccgggaa ggccgtgccg gaaccgccgc agccggcgtc cgcgaaggtg tcgctggagt
     6301 tcagggtgca ggcgctgaag tcccgcgcgc cctgcaggat ggggttgttc tggcgatagg
     6361 tggcgtaggc ggtgatgttg ccctttccgt ccggcgcgtt gacgccgagg gtcaggctga
     6421 cctcggagcc ttcgccgtcg aagaggctgt gcggcggcgg cttgaattgg ctgggatcgg
     6481 tcgcattggc cgcggcggcc cgcaggacat cctggatcgc gccctcgtgg tttgtatgct
     6541 gatagcccga gtactgcgcg tcgaggcgca cgccctcgaa gttcttcagc atgatgaagt
     6601 tgacgacgcc ggccacggcg tcggcgccgt aggtggccga ggcgccgccg gtcagcacgt
     6661 caacccgttc caccagagag gcggggatga agttcaggtc agcggccgat ccggaaatcc
     6721 gcagagttgg gtccccgggc atcaggcggc gattgttgat cagcaccagg gtgcggttgg
     6781 gaccaaggcc ccgcaggtcg accgtggccg agccggtggc ggcgttggaa accatggagc
     6841 cctggccggc gaagacctgc ggcagcgagt tggtgatgtc ttcgatccgg gtgacgccct
     6901 gggccttgat gtcggcgttt ccgacggttg tgaccggcgc gatggaggtc aggttcggcg
     6961 aggggatgcg cgtcccggtg acgacgattt cggaaacctc gccggtggcg gcgtcggccg
     7021 ccgccgcagc tgcgcggctc gtggacaacg caagaacggc tgccccgcag atcatcgagg
     7081 aggccaacag gcgctcccgc atggaatgat ttctcaagat cagctcctcc aaccgccgcg
     7141 ctggcgctgg aaccggccgg cttccgcatt atccagacgc
//
LOCUS       DATAJL010000315         3906 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_18384,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000315 DATAJL010000000
VERSION     DATAJL010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18384"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            132..857
                     /locus_tag="VHN39_06180"
     CDS             132..857
                     /locus_tag="VHN39_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2815959.1"
                     /translation="MADKAIIVIGAGDALGGAIAKRFAREGYAAVIVRRHADQLEPLA
                     KAIREAGGEAHPVGADARQEDQMVALFEKVEAEIAPVEVCVFNIGANVRFPIAETTSR
                     VFTKVWEMACFSGFLAGREAAKVMTPRGRGTVIFTGATASLRGGVGFAAFASAKAGLR
                     AVAQSTARELGPKGVHVAHTIIDGAIDTAWIAENFPARYALKEQDGILNPEHIADAYW
                     ALHVQPRDAWTHELDLRPYMEAW"
     gene            860..1456
                     /locus_tag="VHN39_06185"
     CDS             860..1456
                     /locus_tag="VHN39_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HEX2815960.1"
                     /translation="MPKVVEFLFDFGSPASYLAYKRLPGLAQRTGAHIDYAPMLLGGV
                     FKATGNASPAAIPAKGRWTSADFRRWAARYGTEFNFNPHFPINTLHLMRGAMGLIEDT
                     RFMAYCDAVFDAMWREPKNLGDPAELVPVLRRAGVEADDFRALVERDDVKERLKAATE
                     AAVARGVFGAPTFFVGEEMFFGQDRMDFVEEALELQAA"
     gene            1742..>3906
                     /gene="lon"
                     /locus_tag="VHN39_06190"
     CDS             1742..>3906
                     /gene="lon"
                     /locus_tag="VHN39_06190"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEX2815961.1"
                     /translation="MSEIKILPILPLRDIVVFPHQPVPLFVGREKSVRALEEAMKNDG
                     KQILLATQKDKDDDDPAPDGIYDVGVVATVLQLLKLPDGTVKVLVEGRARAGVSRFTD
                     QAEFYEAEIAYVAEDGAGSAEAEALSRAVVEQFENYVKLNKKVPPEALASIPQIDNPG
                     ELADRIASHLSVKIAEKQQLLEVFNVVKRLEKVYALMEGEISVMQTEKKIRNRVKRQM
                     EKTQREYYLNEQMKAIQRELGEQDDQRDELMELEKRIKKVKLSKEARTKAESELKKLR
                     NMSPMSAESTVVRNYLDWLLSIPWGKAKIKPIDLQKAEDILEGDHYGLEKVKERILEY
                     LAVQSRVGSLKGPILCLVGPPGVGKTSLGRSIAKATGREIVRVTLGGVRDEAEIRGHR
                     RTYIGSMPGKIIQSMKKAKSTNAFFLLDEIDKMGSDYRGDPSSALLEVLDPSQNSTFG
                     DHYLEVDYDLSPVMFVTTANSLNMPQPLMDRMEIIRIPGYTEDEKLEIAKRHILAKLT
                     KDHGLKPEEFIVPDAAIRDLIRYYTRESGVRSLERELGNLARKTVRDLSREKVLTITI
                     DDERLAKYAGIRKFKYGEMDAEDQVGIITGLAYTDFGGDILTIEAVKMPGKGRMTVTG
                     NLKDVMKESISAANSYVRSRATKFGIEPPSFERTDVHIHVPDGATPKDGPSAGAAMAT
                     AIVSVLTGIPIRKEIAMTGEVTLRGRVTAIGGLKEKLLAA"
BASE COUNT          765 a         1277 c         1272 g          592 t
ORIGIN      
        1 gcgatgatcg tctcggccgt ggcctccgcg gcggcggccc tgatcgccgc cctcaccgta
       61 cgggcgaccg ccaaggccaa aggcgcaggt tgaggcttgc ctgaatatga tgatcgtcat
      121 ctaatagcgc catggccgac aaagcgatca tcgtcatcgg cgctggtgac gccctgggcg
      181 gcgcgatcgc caagcgcttc gcccgcgagg gctatgccgc cgtcatcgtg cgccgccacg
      241 cagaccagct cgaaccgctc gccaaggcga tccgcgaggc gggcggagag gcccatcccg
      301 tcggcgccga cgcgcggcag gaggaccaga tggtcgccct gttcgaaaag gtggaggccg
      361 aaatcgcgcc cgtggaggtc tgcgtcttca acatcggcgc gaacgtccgt tttcccatcg
      421 ccgagaccac cagccgcgtc ttcaccaagg tctgggagat ggcctgcttc tccggcttcc
      481 tggccggccg cgaggccgcc aaggtgatga cgccgcgggg ccggggcacg gtgatcttca
      541 ccggggccac cgccagcctg cgcggcggcg tgggcttcgc cgcatttgcc tcggccaagg
      601 ctggcctcag ggccgtcgca cagagcacgg cgcgcgaact gggccccaag ggcgtccacg
      661 tggcccacac catcatcgac ggggccatcg acaccgcctg gatcgccgag aacttcccgg
      721 cccgttacgc cctgaaagag caggacggga tcctcaaccc cgagcacatc gccgacgcct
      781 actgggccct gcacgtgcag ccgcgcgacg cctggaccca tgaactcgat ctgcggccct
      841 acatggaggc ctggtgacca tgcccaaggt agtggagttc ctgttcgatt tcggcagtcc
      901 ggccagctat ctcgcctaca agcgcctgcc gggccttgcg cagcggaccg gcgcgcacat
      961 cgactacgcg cccatgctgc tgggcggggt cttcaaggcc accggcaacg cctcgccggc
     1021 tgcgatcccg gccaagggcc gctggacgag cgccgatttc cgccgctggg cggcgcgcta
     1081 cggcacggag ttcaacttca acccgcactt cccgatcaac accctgcacc ttatgcgcgg
     1141 cgccatgggc ctgatcgagg acacccgctt catggcctac tgtgacgccg tcttcgacgc
     1201 catgtggcgc gagccgaaga acctcgggga tccggcggaa ttggtcccgg tcctgcgccg
     1261 cgcaggcgtt gaggccgacg atttccgcgc cctggtcgag cgcgacgacg tcaaggaacg
     1321 cctgaaggct gcgaccgagg ccgcggtcgc acggggggtt ttcggcgccc cgacattctt
     1381 cgtgggcgag gagatgttct tcggccagga ccgcatggat ttcgtcgaag aggcgctcga
     1441 actgcaggcg gcttgagact ttgggcgcca tttcccacat acgctacaag ggtcgaggca
     1501 tggatttgcg cgcacgacct cgccttcacc gctcaagtca gctcgtgaat cgcggtgaga
     1561 cccagtgtcg cgcaaggcta ttgctccgct tgaaccatgg gccaaacggt ccacataaat
     1621 caccgaaagc cgtcgcctgc ggggacggac ggatcgtacg actcagacgc atcgtctgag
     1681 tgaccgcgat ccgagaggcc gggctgcgag accaacgcgg ccggtcagga gttgaaggca
     1741 tatgtctgag atcaaaatac tgccgatcct gccgttgcgg gacatcgtgg tcttcccgca
     1801 ccagccggtg ccgctcttcg tgggccgcga gaagtccgtg cgcgcgctgg aagaggcgat
     1861 gaagaacgac ggcaagcaga tcctgctcgc cacccagaag gacaaggatg acgacgatcc
     1921 ggcgcccgac ggcatctatg acgtaggtgt cgtggccacc gtcctgcagc tgctcaagct
     1981 gcccgacggc accgtcaagg tgttggtgga gggccgcgcg cgcgctggcg tctcccgctt
     2041 taccgatcag gccgagttct acgaagccga gatcgcctat gtggcggagg acggcgcggg
     2101 ttcggccgaa gccgaggcgc tcagccgcgc cgtggtcgag cagttcgaaa actatgtgaa
     2161 gctgaacaag aaggtgccgc ccgaggcgct ggcctcgatc ccccagatcg acaatcccgg
     2221 cgagcttgcc gaccggatcg cgtcgcacct ttcggtgaag atcgccgaga agcagcagct
     2281 gctggaagtc ttcaacgtcg tgaagcggct ggagaaggtc tacgccctga tggagggcga
     2341 gatcagcgtc atgcagacgg aaaagaaaat ccgtaaccgc gtgaagcgcc agatggagaa
     2401 gacccagcgc gagtactatc tgaacgagca gatgaaggcg atccagcgcg agttgggcga
     2461 acaggacgac cagcgcgacg agctgatgga gctcgaaaag cgcatcaaga aggtcaagct
     2521 ctccaaggag gcccgcacca aggccgagag cgagctgaag aagctgcgca acatgagccc
     2581 gatgtcggcg gaatccaccg tcgtcagaaa ctacctcgat tggctgctgt cgatcccgtg
     2641 gggaaaggcg aagatcaagc ccatcgacct gcagaaggcc gaggacatcc tcgaaggcga
     2701 ccactacggc ctggagaagg tcaaagagcg gatcctggag tacctggcgg tgcaaagccg
     2761 cgtgggctcg ctgaaaggtc cgatcctctg cctcgtcggc ccgcccggcg tcggcaagac
     2821 ctcgctcggc cgctcgatcg ccaaggcgac gggccgcgag atcgtccgcg tgacgctcgg
     2881 cggcgtgcgc gacgaagccg agatccgcgg ccaccggcgg acctacatcg gctccatgcc
     2941 cggcaagatc atccagtcga tgaagaaggc caagtcgacc aacgccttct tcctgttgga
     3001 tgagatcgac aagatgggtt ccgactaccg cggcgacccg tcctccgccc tgctagaagt
     3061 gctcgacccg tcgcagaact cgaccttcgg cgaccactat ctggaggtcg actacgacct
     3121 atcgccggtg atgttcgtca cgacggccaa cagcctgaac atgccccagc cgctgatgga
     3181 tcgcatggag atcatccgca tccctggcta caccgaagat gagaagctgg agatcgccaa
     3241 gcggcacatc ctggccaagc ttaccaagga tcatggactg aagccggagg agttcatcgt
     3301 tccggacgcc gcgatccgcg acctgatccg ctactacacc cgcgaaagcg gcgtgcggtc
     3361 gctggagcgg gaactgggca acctggcccg caagacggtg cgcgacctct cccgcgagaa
     3421 ggtgctcacg atcaccatcg atgacgagcg gctggccaag tacgcgggca tccgcaagtt
     3481 caagtatggc gagatggacg ccgaggacca ggtcgggatc atcaccggtc tggcctacac
     3541 cgacttcggc ggcgacatcc tgaccatcga ggcggtcaag atgccgggca agggccgcat
     3601 gacggtcacc ggaaacctga aggacgtgat gaaggagtcg atctcggcgg cgaacagcta
     3661 cgtccgcagt cgggccacca agttcggcat cgagccgccg agcttcgagc ggaccgacgt
     3721 ccacatccac gtgccggacg gagcgacgcc caaggacgga ccgtccgccg gcgcggccat
     3781 ggctacggcc atcgtctcgg tgctgaccgg tatcccgatc cgcaaggaaa tcgccatgac
     3841 cggcgaggtc accctgcggg gccgggtcac cgccatcggc ggcctgaagg aaaagctgct
     3901 ggcggc
//
LOCUS       DATAJL010000316         5246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_56803,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000316 DATAJL010000000
VERSION     DATAJL010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5246
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56803"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1127)
                     /locus_tag="VHN39_06195"
     CDS             complement(<1..1127)
                     /locus_tag="VHN39_06195"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX2815962.1"
                     /translation="MKSKFVALAATGLGSALLLTVGAGLAVQAQPKAPATKAAACPGG
                     DTGITLPPGFCATVFADNLGNVRHITVAADGTLYANSWNGSSYFPRSAPAADGFLIAV
                     RDTDHDGKADKVSHFGQTPAEGSKGGTGIGLYKGAVYAEMNDKIVRYPLAGGVVPADK
                     PEVVLSGMPLGGDHPMHPFVINAKGQMFVDMGTATNSCQPRNRVAGIPGNEPCDELNT
                     RGGTWLYSADKLGQTFSPGERYATGIRNGMGLAFDTSGRLFATQHGRDQLLQNWGKLY
                     TDAKMTTELPSEELMLETKGGDYGWPFCYFDNFQKKLVLAPEYGGDGGKAQGVCEKKL
                     PPVAAFPAHWAPNDLQIYNAKAFPAAYQGGAFIAFHGSWNRA"
     gene            complement(1241..1792)
                     /locus_tag="VHN39_06200"
     CDS             complement(1241..1792)
                     /locus_tag="VHN39_06200"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEX2815963.1"
                     /translation="MEDAQGLVVAVARDGEHHFSKAPQPRIRLLAGLGVEGDAHCGVT
                     VKHRSRVKRDPTQPNLRQVHLIHAELIDELRAAGFAVEPASMGENITTRGVALLDLPA
                     GARLRIGSEAVVEVTGLRNPCFQLDNYQAGLTQAVLATGPDGELIRKAGVMAIVVEGG
                     EVAPGQVITVELPSPPLRRLTPV"
     gene            complement(1831..2529)
                     /locus_tag="VHN39_06205"
     CDS             complement(1831..2529)
                     /locus_tag="VHN39_06205"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEX2815964.1"
                     /translation="MTQPAPKIEIVIPLFPDVTHLDFTAPHQVLSRAPNSQLTVASMG
                     GRDIAAEGLVFTGLADLAKVERCDLLLVPGGFGAADAMLDEAFMREIRRLGAGATWLT
                     SVCTGSLILAAAGFLTGRRAATHWAWRELLEPFGVIVDTSRVARDGNIITGGGVTAGL
                     DFAFAVLAEIAGEDFAQTVQLGLEYAPAPPFNTGRPELAPPEILAAFNSRVGPLVAAR
                     RAAAQEAARRLQPA"
     gene            2614..3555
                     /locus_tag="VHN39_06210"
     CDS             2614..3555
                     /locus_tag="VHN39_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlxA family transcriptional regulator"
                     /protein_id="HEX2815965.1"
                     /translation="MTRRIAVVIFPGFQLLDAAGPIAAFEIAGRFAEGVYAIEVLAAE
                     AGAVASSSGVRMAAGGLGEGPWDTIVISGGDGTRSLPDLAKIVAWLKRAAPAARRVAS
                     VCSGAYLLAEAGLLDGKRATTHWGRSDDFARRYPKVRLEPDRIFVRAGDVWTSAGITA
                     GIDLALALVEDDLGGDIALRTAQQLVVHQRRPGGQSQFSALLEMGGPSGRFAGLMDWM
                     RERLAEPLGVERLADRAAMSPRHFARAFTAETGVTPAKAVERLRLEAARVRVEAGYEP
                     IDRVAQAAGFGDPERMRRAFLRAFGQPPQALRRAAKT"
     gene            complement(3552..4115)
                     /locus_tag="VHN39_06215"
     CDS             complement(3552..4115)
                     /locus_tag="VHN39_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1003 domain-containing protein"
                     /protein_id="HEX2815966.1"
                     /translation="MAEQAHQELAQQLLGCSYEKLNPVQRSVIDLIATESPSGLDPAL
                     SHDERKFGDRLADRVAAVGGSWGFIIAFGLILTVWMGWNEATKGHPLAFDPYPFIFLN
                     LMLSMLAAIQAPVIMMSQNRAAARDREAASHDYTVNLRAELEIMHLHDKVDTMREKQM
                     LELLKQQREALRLLKGQVDKLSAKTKP"
     gene            complement(4189..5142)
                     /locus_tag="VHN39_06220"
     CDS             complement(4189..5142)
                     /locus_tag="VHN39_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HEX2815967.1"
                     /translation="MLISAAFIGSGVGLGLGVTYLVGGLAQATIDHSRAARIAEAAQG
                     GFSETMLQREINRMDPAALRLARAHDDLAADSEHDQVDAWPAGLDDRLPVGGHGSALD
                     SARQLDCLTQAVYFEARGETPRGQAAVAQVVMNRVKSPSFPKTVCGVVFQGAATHGCQ
                     FSFACDGSMRRALETGAWDRARRIAERALSGVMLADIGNATHFHTTSVQPYWEPQMLR
                     VAQVGLHVFYRFNPHAPVAAPMDENRAVFVSLPIGPVSNLRLANAVLQKTADATVAAA
                     GLAPAPAESKPAASKPAEPVVSLGKAPDAANPQRSADAAAS"
BASE COUNT          768 a         1765 c         1868 g          845 t
ORIGIN      
        1 gccctgttcc acgacccatg gaacgcgatg aaggcgccgc cctggtaggc cgcggggaag
       61 gccttggcgt tgtagatctg caggtcgttg ggggcccagt gggccgggaa ggccgccacc
      121 ggcggcagct tcttctcgca gaccccttgg gccttgccgc cgtcgccgcc gtattccggc
      181 gccaggacca gctttttctg gaagttgtcg aagtagcaga agggccagcc gtaatcgccg
      241 cccttggttt ccagcatcag ctcctcggac gggagctccg tggtcatctt ggcgtcggtg
      301 tagagcttcc cccagttctg cagcagctgg tcgcggccat gctgtgtggc gaagaggcgg
      361 cccgaggtgt cgaacgccag gcccatgccg ttgcggatgc cggtggcgta gcgctcgccg
      421 ggcgagaagg tctggccgag cttgtcggcg gaatagagcc atgtgccgcc gcgtgtgttc
      481 agctcatcgc agggctcatt gccgggaata cctgccaccc ggttcctcgg ctggcaggag
      541 ttggtcgccg tgcccatgtc gacgaacatc tggcccttgg cgttgatcac gaagggatgc
      601 atcgggtggt cgccgcccag cggcatgccc gatagcacca cttccggctt gtcggcagga
      661 acaacgccgc cggccagcgg atagcgcacg atcttgtcgt tcatctcggc gtagaccgcg
      721 cccttgtaga gcccgatgcc ggtgccgccc ttggagccct ccgccggggt ctggccgaag
      781 tggctgacct tgtcggcctt gccgtcgtgg tcggtgtccc gcaccgcgat caggaaaccg
      841 tcggcggccg gtgcgctgcg cgggaagtaa gacgagccgt tccagctgtt ggcgtagagc
      901 gtgccatccg ccgcgacggt gatgtggcgc acattgccca ggttgtcggc gaagaccgtg
      961 gcgcagaagc cgggcggcag cgtgatgccg gtgtctccgc cgggacaggc cgccgccttg
     1021 gtcgcgggcg ccttgggctg ggcctgaacc gcgaggcccg cccccacggt caggagcaag
     1081 gccgatccga gaccggtggc cgccaacgcc acgaacttcg acttcatccg cattccctcg
     1141 tcccaattgt tatgcagttg attttcctat cgcgtcgtcg cgcgcgccgg aagggcgcgc
     1201 cttggcggcg cgattccagg agcctagcac ggccgggcga tcagaccggc gtcaggcggc
     1261 gaagcggtgg cgacggcagc tcgacagtga tcacctggcc cggcgcgacc tcgccgccct
     1321 cgaccacgat ggccatgact ccagccttgc ggatcagctc cccgtccggc ccggtcgcca
     1381 gcaccgcctg cgtcaggccg gcctggtagt tgtcgagctg gaagcacgga ttgcgaagcc
     1441 cggtcacctc gacgaccgcc tccgacccga tccgcaggcg cgcgccggcc ggcaggtcga
     1501 gcagggcaac gccccgcgtg gtgatgttct cacccatgct cgcgggctcg accgcgaagc
     1561 cagccgcccg cagctcgtcg atcagttcgg cgtggatcag gtggacttgc ctgaggttgg
     1621 gctgggtcgg atcgcgcttc acgcgcgacc ggtgcttcac cgtcacgccg cagtgcgcat
     1681 cgccctcaac tcccagcccg gccagcagcc ggatgcgcgg ctgcggcgcc ttcgagaagt
     1741 ggtgctcccc gtcccgagcg accgcgacga cgaggccttg ggcatcctcc atcggcccag
     1801 catagcgccg gccccggcgg cttcctaccg tcaggcgggt tgcaggcggc gggcggcttc
     1861 ctgggcggcg gcgcgacggg cggcgaccag gggtcccacg cggctgttga aggcggccag
     1921 gatttcgggc ggggccagtt ctgggcggcc cgtgttgaac ggcggggccg gcgcatattc
     1981 caggccaagc tggacggtct gggcgaagtc ctcgccggcg atctcggcca acaccgcgaa
     2041 agcgaaatcg agccccgccg tcacgccacc gccagtgatg atgttcccgt cgcgggcgac
     2101 gcggctcgtg tcgacgatga cgccgaacgg ctccagcagt tcgcgccacg cccagtgggt
     2161 ggcggcgcgc ctgccggtca gaaacccggc cgcggccagg atcagcgagc ccgtgcagac
     2221 cgaggtcagc caggtcgcgc ccgcacccag acggcggatc tcgcgcatga aggcctcgtc
     2281 cagcatggcg tcggctgcgc cgaagccgcc ggggaccagt aacaggtcgc aacgttccac
     2341 cttcgccagg tcggcgagcc cggtgaacac cagcccctca gcggcgatgt cccgcccgcc
     2401 catggaggcc acggtcagtt gcgaattcgg cgcgcggctc agcacctgat gcggggcggt
     2461 gaaatcgagg tgggtgacat ccggaaagag cggaatgacg atctcaatct tgggcgcggg
     2521 ctgggtcacg gcggtgtcct tgcgggattt gacgctggcc ttatctcagg cctagtctct
     2581 gtctgaaatg acaagtttcc ctcgaaatac gccatgacgc gccgcatcgc cgtggtgatc
     2641 tttccgggtt tccagctgct ggacgccgcc gggccgatcg cggccttcga gatcgccgga
     2701 cgtttcgccg agggcgtcta cgccatcgag gtgctggcgg ccgaggcggg cgcggtcgcc
     2761 agttcgtccg gcgtgcggat ggccgccgga ggcctgggcg agggcccctg ggacaccatc
     2821 gtgatctccg gcggcgatgg cacgcggtcc ctgcctgacc tggcgaagat cgtggcctgg
     2881 ctgaagcgcg ccgccccggc cgcgcggcgg gtggccagcg tctgttccgg ggcctatctg
     2941 ctcgccgagg ccggcctcct ggacggcaaa cgggcgacca cccactgggg ccgttccgac
     3001 gacttcgcgc ggcgctatcc gaaggtccgc ctggagccgg accgtatctt cgtgcgcgcg
     3061 ggcgatgtct ggacctcggc cgggatcact gccggcatcg acctggcgct ggcgctggtc
     3121 gaagacgatt tgggcggcga catcgccctt cgcacggccc agcagctggt ggtccaccag
     3181 cgccggccgg gtgggcagtc ccagttttcc gccctgctgg aaatgggcgg acccagtggg
     3241 cggttcgccg gcctgatgga ctggatgcgc gagcggctgg ccgagccgct gggcgtcgag
     3301 cgcctggccg accgcgccgc catgagcccg cgccacttcg cccgcgcgtt caccgcggag
     3361 accggcgtca ccccggccaa ggccgtcgag cgtttgcgcc tggaggccgc cagggtgcgc
     3421 gtcgaagcgg gctacgagcc catcgaccgg gtggcccagg ccgcgggctt cggcgatccc
     3481 gagcgcatgc gaagagcctt cctgcgagcc ttcggccagc cgccccaggc gttgcggcgg
     3541 gccgccaaga cctagggctt ggtcttcgcg ctcagcttat ccacctggcc cttcagcagg
     3601 cgcagggcct cgcgctgttg cttcaggagt tcgagcatct gtttctcgcg catggtgtcg
     3661 accttgtcgt gcaggtgcat gatctccagc tccgcgcgca ggttgacggt gtagtcatgg
     3721 ctggcggctt cgcggtcgcg ggccgcggcg cggttctggc tcatcatgat caccggcgcc
     3781 tggatggcgg ccagcatcga cagcatcagg ttcaggaaga tgaagggata ggggtcgaag
     3841 gccagcggat ggcccttggt cgcttcgttc cagcccatcc agaccgtaag gatcaatcca
     3901 aaggcgatga tgaagcccca ggagccgccc accgccgcca cgcggtcggc cagccggtcg
     3961 ccgaacttgc gctcgtcgtg gctcaacgcc gggtcgaggc cggacggcga ctcggtggcg
     4021 atcagatcga tgacgctgcg ctggaccggg ttcagctttt cgtaggaaca gcccagcagc
     4081 tgctgggcga gttcctggtg agcttgttcc gccatgcgac gaccttctcc tctgaccaga
     4141 ccacaggctg gccgggaagg ctcggagacg caaggtgaag ggctggagtc aggaggcggc
     4201 tgcgtcggca gatcgctgag gattggccgc gtccggcgcc ttgccgaggc tgaccaccgg
     4261 ctcggcgggc ttgctggccg ccggcttgga ctcggcgggc gcaggcgcga gccccgcggc
     4321 ggccacagtg gcgtcggcgg tcttctgcag caccgcgttg gccaggcgca ggttggacac
     4381 ggggccgatc ggcaggctca caaacaccgc gcggttctcg tccatcggcg cggcgaccgg
     4441 cgcatgggga ttgaagcggt agaagacatg caggcccacc tgggcgacgc gcagcatctg
     4501 cggctcccag tagggctgga cgctggtggt gtggaagtgg gtggcattgc cgatgtcggc
     4561 gagcatgaca ccggagagcg cgcgctcggc gatgcgccgg gcccggtccc aggcgccggt
     4621 ctcgagggct cggcgcatgg agccgtcgca ggcgaaactg aactggcagc cgtgggtggc
     4681 tgcgccctga aacaccacgc cgcagacggt cttgggaaag gacgggctct tcacccggtt
     4741 catcaccacc tgggccacgg cggcctggcc gcgcggagtc tcgccgcggg cttcgaaata
     4801 gacggcctgg gtcaggcaat cgagctggcg ggcgctatcc agcgccgagc catggccgcc
     4861 gacgggaagg cggtcgtcga ggcccgctgg ccatgcgtca acctggtcgt gttcgctgtc
     4921 agcggccaga tcgtcatgcg cgcgagccag gcgcagggca gccggatcca tgcgatttat
     4981 ttcgcgctgc aacatggttt ccgagaaccc gccctgggcg gcttcggcga ttcgggccgc
     5041 ccggctgtgg tcgatggtgg cctgcgcgag gccgcctacc agatatgtca cgccaaggcc
     5101 caggccgacg ccggagccaa tgaaagcggc gctaatcagc acgcgccaat cggcgcgggc
     5161 ctgcgttcct gatgtcaaaa caaacgtgtc ctacacgacg agggcgaact tgccccccga
     5221 cattgtcgcc gcgatcgccc ctgctc
//
LOCUS       DATAJL010000317         2402 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5547,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000317 DATAJL010000000
VERSION     DATAJL010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5547"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..544)
                     /locus_tag="VHN39_06225"
     CDS             complement(<1..544)
                     /locus_tag="VHN39_06225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEX2815968.1"
                     /translation="MAEGDSKVRRTEAPRTDAKFGQGFLTDIWYFAALSADLKPGKLA
                     RHELLGEPVLLGRSNSGTLFALRDICPHRAAPLSAGRFNREASGAETVECPYHGWRFG
                     ADGACAAIPSLVDDQAMDIGRIRVRRYPIAESQGLVFVWVASGPRGEGEPTEPPPVFE
                     GVVGGRPKLIDRMDFEAHIDH"
     gene            632..1012
                     /locus_tag="VHN39_06230"
     CDS             632..1012
                     /locus_tag="VHN39_06230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815969.1"
                     /translation="MLRIAACAAVVALSASGAVAQAPPANEAAAMHDFFGAALQIDLP
                     GGEWSAKRYYAPDHTYREHGSGGEVHGVWSIENGKICAAQADPPEGSPARYCNVGVGK
                     KLGETWRDTDPVTGNTVTFTLKPA"
     gene            complement(1009..>2402)
                     /locus_tag="VHN39_06235"
     CDS             complement(1009..>2402)
                     /locus_tag="VHN39_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-amylase family glycosyl hydrolase"
                     /protein_id="HEX2815970.1"
                     /translation="FQRLLDAAHARGLKVLLDEVLSHTSDIHPWFVESLTGGADGPKA
                     DWYVWADPQDDGTAPNNWLSVFGGPAWAYQPARRQHYHHKFLRQQPKLNWRSPGAREA
                     ALSVLDHWLAKGVDGFRLDVAGTFLHDAALTDNPPVPVAERTSYDWSHAGNLQRHLFD
                     SNLPENVETLEVIRHRVEAHNGANGGDRFVFGEFSEEEERCGAYLSPDEGLHSAYTFV
                     MLLARQLTPQFIKDHYATLAAYPAHWPTISFSNHDVPRTLSRFGGEDAQSQEGGPELA
                     KLMFALLVSLKGTTLIYQGEELGLPQAQLTRDQLRDPVGDLYWPYSGGRDGCRTPMPW
                     SPGPTLGFTQGSPWLPAATEHAGLTVAAQEVDRDSTLTFAREMIAFRHGSAAMTAGDL
                     EFLEVPDPILAFVRRDGDEAIACVFNLSAEPRFAEAPELAGATLLEVRAGDAELRGGS
                     IGLSAWAAVYLRL"
BASE COUNT          364 a          778 c          893 g          367 t
ORIGIN      
        1 cgtggtcgat gtgggcctcg aagtccatgc ggtcgatgag cttggggcgg ccgcccacca
       61 cgccctcgaa gaccggcggc ggttcggtcg gttcgccctc gccgcgcggg ccggaagcca
      121 cccagacgaa gaccaggccc tggctctcgg cgatgggata gcgccgcacg cggatgcggc
      181 cgatgtccat cgcctggtcg tccaccagcg aggggatcgc cgcgcaggcg ccgtccgccc
      241 cgaaccgcca gccgtgatag gggcactcga cggtctccgc acccgaggcc tcgcggttga
      301 aacgccccgc cgaaagcggg gctgcgcgat gcggacagat gtcgcgcagg gcgaagaggg
      361 tcccggaatt ggagcggccg agcagcaccg gctcgcccag cagttcgtgg cgggcgagct
      421 tgccgggctt caggtcggcg gagagggcgg cgaagtacca gatgtcggtc aggaagccct
      481 ggccgaactt ggcgtccgtc ctgggggctt ccgtccgcct tactttgctg tcgccctcgg
      541 ccatgcggcg gttctattct ggctcggcgg caggggaaag gctcgcggcg atctcggcgt
      601 cgtcgagccg gcggccgagg gaggattgct catgctgagg atcgctgcct gcgcggctgt
      661 cgtcgccctg tcggcctccg gagccgtagc tcaggcgccg cctgcgaatg aggcggcggc
      721 gatgcacgac ttcttcggcg cggcgctgca gatcgacctg cctggggggg agtggtcggc
      781 caagcgttac tatgcgcccg accacacata tcgcgagcac ggctcaggcg gcgaggttca
      841 tggcgtctgg tcgatcgaaa acggcaagat ctgcgcggct caggccgacc cgccggaggg
      901 cagcccggcc cgctactgca atgtcggcgt cggcaagaag ctgggcgaga cgtggcgcga
      961 caccgatccc gtgaccggca acaccgtcac cttcaccctc aagcccgcct agagccgcag
     1021 atagaccgcg gcccaggccg acaggccgat agagccgccg cgcagttcgg cgtcgccggc
     1081 gcggacctcg agcagggtcg cgccggccag ctcaggcgct tcggcgaacc gcggctcggc
     1141 gctgaggttg aagacgcagg cgatggcctc gtcgccgtcg cggcgcacga aggccaggat
     1201 agggtcgggg acctccagga actccaggtc gcccgcggtc atggccgctg agccgtgccg
     1261 gaaggcgatc atctcgcggg cgaaggtcag ggtggagtcc ctgtccacct cttgggccgc
     1321 gaccgtcagc ccggcatgtt cagtggcggc cggaagccag ggcgacccct gggtgaatcc
     1381 cagcgtgggt cccggggacc agggcatggg cgtgcggcag ccgtcgcggc cgccggaata
     1441 gggccagtag agatcgccca ccggatcgcg caactggtcc cgcgtgagct gcgcctgcgg
     1501 caggccgagc tcctcgccct ggtagatgag cgtcgtgccc ttcaggctga ccagcagggc
     1561 gaacatgagt ttcgccagct ccggcccccc ttcttgtgat tgagcgtcct cgccgccgaa
     1621 gcggctgagc gtgcgcggca cgtcgtggtt ggaaaagctg atggtcggcc agtgggccgg
     1681 ataggcggcg agcgtcgcgt agtggtcctt gatgaattgc ggcgtcagct ggcgggccag
     1741 cagcatgacg aaggtgtaag ccgagtgcag gccttcgtcg ggcgagagat aggcgccgca
     1801 gcgctcttct tcttccgaga actcgccgaa gacgaaacga tcgcccccat tggcgccatt
     1861 gtgcgcctcg acgcggtggc ggatgacttc gagtgtctcg acattctcgg gcaggttgga
     1921 atcgaacaga tgccgctgga ggttgccggc gtgtgaccag tcgtagctgg tgcgctcggc
     1981 gaccgggacc ggtggattgt cggtgagcgc ggcgtcgtga aggaaggtcc cggccacgtc
     2041 caggcggaag ccgtcgacgc ccttggccag ccaatggtcg agcaccgaca gcgccgcctc
     2101 gcgtgcgccg gggctgcgcc agttcagctt gggctgctgg cgcaggaact tgtggtggta
     2161 atgctgccgc cgggccggct ggtaggccca ggccgggccg ccgaacaccg agagccagtt
     2221 gttgggggcc gtcccgtcgt cctgggggtc ggcccagacg taccagtcgg ccttgggtcc
     2281 gtcggcgccg ccagtcaggc tctccacgaa ccaggggtga atgtcggagg tatggctcag
     2341 gacctcgtcc agcaggacct tcaggccacg ggcgtgggcg gcgtccagca ggcgctggaa
     2401 gt
//
LOCUS       DATAJL010000318         2749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44250,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000318 DATAJL010000000
VERSION     DATAJL010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2749
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44250"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..1625
                     /locus_tag="VHN39_06240"
     CDS             153..1625
                     /locus_tag="VHN39_06240"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR01770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEX2815971.1"
                     /translation="MTFDTTQLLSYTPMLILIGMACVILLAETFVRGTARAGLAWMGV
                     AGCVAALVAIAAGWSDAAEPSTHFQGMLTVDRMALYLDAAFVVAALLTLLFAPPYLRE
                     QGFEFGEFYALVLFGTAGMMMVVHATSLVSLLIGIETMSLAAYILTGCARRSLRSAEG
                     AMKYFLMGAFATGFLVYGIAMVYGATGGQFLYSEIAARTPTASRMPIFYLGEYFILIA
                     LVFKVAAVPFHMWAPDAYEGAPTPVTGFMAAGVKAAAFGAIIRLLSTAFASPLMVFDF
                     TGWASALSVLAALTMTLGNLAAIRQENVKRMLAYSSIAHAGYLLIGVVAMGLGVADAK
                     PALLFYLLAYTFTTLGAFGVVAWIGNRADERLYVDDWAGVATKRPAVALAMTLFLLSL
                     GGIPPAGGFFGKFYLFRAAMQSPQLYWLVVVGVLNSLVSVFYYLRVVVAMYFRDAARP
                     FSPIDAPSMRAGLLLAALAVLLLGIFPSTFVEWAGSVGLK"
     gene            complement(1773..2639)
                     /locus_tag="VHN39_06245"
     CDS             complement(1773..2639)
                     /locus_tag="VHN39_06245"
                     /inference="COORDINATES: protein motif:HMM:NF021507.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HEX2815972.1"
                     /translation="MRIRAALFGLFGLLGLVSLADLGAPRAAPAAAPRTAPALKWTVL
                     QPGLEYATSEAPGARELPIDGHIHLVRVDPKQRRLEAVMAGAGDGRLRTAAEWCHERD
                     LAVAINMGMYEEDRRTNTGYARSGRYVNNGHWSSKYKAALGFGAKEGGGAPAVLMADL
                     DDAGDRKRLEGYGTVVQNLRLIRGGQGLWQKQERRWSEAAVGIDKQGRLLFVFSRYPY
                     AMKELNDILLALPLALDGAMHVEGGPEASLSIHAGGVNIDLNGSFETGFVENDGVERQ
                     WPIPNVLGVGRR"
BASE COUNT          369 a          987 c          891 g          502 t
ORIGIN      
        1 gactcgaagc gaaacgctga cgcgccggcg cacgtctatc cggctattca aatggggacc
       61 ctgggagggt ccccaaaccc ccccgcgacg gggtccgccg ggcctagccc gtcggacacc
      121 cacgcgccgg ccgccatccc tggaaacgcg ccatgacctt cgacaccacg caactcctct
      181 cctacacgcc gatgctgatc ctgatcggca tggcgtgcgt gatccttttg gcggagacgt
      241 tcgtgcgggg caccgcgcgc gcgggcctgg cctggatggg cgtcgccggt tgcgtagcgg
      301 cgctggtggc gatcgccgcc ggctggtccg acgccgccga gccgtccacg cacttccagg
      361 ggatgctgac cgtcgaccgc atggcgctct acctcgacgc cgcgttcgtg gtcgccgccc
      421 tgttgacgtt gctgttcgcg cccccttacc tgcgcgagca ggggttcgag ttcggcgagt
      481 tctacgcgct ggtgctgttc ggcacggccg gcatgatgat ggtcgtccac gccaccagcc
      541 tggtgtcgtt gctcatcggc atcgagacga tgtcgctcgc cgcctacatc cttaccggct
      601 gcgcgcggcg gagcctgcgc agcgccgaag gggcgatgaa gtatttcctc atgggggcgt
      661 tcgccaccgg cttcctcgtc tacggcatcg cgatggtcta cggcgccacg ggcggccagt
      721 tcctctactc cgagatcgct gctcgcaccc ccaccgccag caggatgccg atcttctacc
      781 tcggcgagta cttcatcctc atcgcgctgg tcttcaaggt cgcggccgtc cccttccaca
      841 tgtgggcccc cgatgcctac gagggggcgc cgacaccggt caccggcttc atggccgccg
      901 gcgtgaaggc cgcggcgttc ggcgcgatca ttcggctgct cagcaccgcc ttcgcgagcc
      961 cgctcatggt cttcgacttc accggctggg cctcggcgct gtcggtgctg gcggcgctga
     1021 ccatgacgct cggcaacctg gcggccatcc ggcaggagaa cgtcaagcgg atgctggcct
     1081 actcgtcgat cgcccacgcc ggctacctgc tgattggcgt cgtggccatg ggcctgggcg
     1141 tggcggacgc caagccggcc ctgcttttct atctgctcgc ctacaccttc acgacgctgg
     1201 gtgcctttgg cgttgtggcc tggatcggca accgcgccga tgagcgcctc tacgtcgacg
     1261 actgggcggg cgtggccacc aagcgcccgg cggtggcgct ggccatgacg ctcttcctgc
     1321 tgtcgctggg cggcatcccg cctgcgggcg gcttctttgg caagttctac ctctttcgcg
     1381 cggcgatgca gtcgccccaa ctctactggc tggtcgtggt cggcgtcctc aacagcctgg
     1441 tcagcgtctt ttactatctg cgcgttgtcg tcgcgatgta cttccgcgac gccgcccgcc
     1501 cgttctcccc catcgacgcc ccttcgatgc gcgccgggct cctgctggct gcgctggctg
     1561 tcctcctgct cggcatcttc cccagcacct tcgtcgagtg ggccggctcc gtcggcctca
     1621 agtaagcgcc ggacaccctc agggccgctc tgtgattcta gggcgtcgaa tgcccgcagc
     1681 cccgtagaaa cgaagcgctc gccgcctccg cgtcgaacga agcgccccag atggactact
     1741 tacgacctct ggcccgacga ataccccact gcctagcggc ggccgacgcc gaggacgttg
     1801 gggatgggcc actgccgctc cacgccgtcg ttttcgacga agccggtctc gaagctgccg
     1861 ttgagatcga tgttcacgcc gccggcgtga atcgacaggc tcgcctcggg cccgccttct
     1921 acgtgcatgg cgccgtcgag cgccagcggc agtgcgagca agatgtcgtt cagctctttc
     1981 atggcgtagg gataccggct gaagacgaag aggaggcgcc cctgcttgtc gatgcccacc
     2041 gcggcctcgc tccagcgccg ctcctgcttc tgccagaggc cttgcccccc ccggatcagg
     2101 cgcaggttct ggacgacggt cccatatccc tcgagccgct tcctgtcgcc ggcgtcgtcg
     2161 agatccgcca tcaggaccgc cggagcgccg ccgccttcct tcgctccgaa gccgagcgcc
     2221 gccttgtact tggaggacca gtgtccgttg ttcacgtagc ggccgctgcg cgcgtagccg
     2281 gtattggtac gcctgtcttc ctcgtacatt cccatgttga tggcgaccgc gagatcccgc
     2341 tcgtggcacc actccgcggc ggtgcgcagc cgtccgtctc cggccccggc catcacggcc
     2401 tccagccttc gctgcttggg gtcgacgcga acgaggtgaa tgtggccgtc gatcggcaac
     2461 tcgcgggcgc caggcgcctc ggaggtcgcg tactcgagcc cgggttgtag gacggtccac
     2521 ttgagcgcgg gcgcggtccg cggggcggcc gcaggcgcgg cgcgcggcgc tcccagatcg
     2581 gcgaggctca cgagcccgag gagcccgaag agaccgaaca gcgcggctcg gatgcgcatc
     2641 gtgagagcca gtgtactccc cgcgcagggc gcagaaaaaa ccggcgcccc gcgcgtggcg
     2701 ggacgccggt tgatagtcgg actgggtgtt actgagcgac gatcgagtc
//
LOCUS       DATAJL010000319         2901 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_66723,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000319 DATAJL010000000
VERSION     DATAJL010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2901
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66723"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            278..664
                     /locus_tag="VHN39_06250"
     CDS             278..664
                     /locus_tag="VHN39_06250"
                     /inference="COORDINATES: protein motif:HMM:NF036437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5367 family protein"
                     /protein_id="HEX2815973.1"
                     /translation="MTTKEMTTLSLLGFGIWLSGAVMFRFGGGLMFEHGPWVLAASGV
                     GIAFSVCLLLSSIMGWRKTPTSLAVTAAVVMTLPGLFGDVAYVLAFHQITGLGAATAG
                     PYAAVVIFGTAVLFAYALFLARPARP"
     gene            743..1324
                     /locus_tag="VHN39_06255"
     CDS             743..1324
                     /locus_tag="VHN39_06255"
                     /inference="COORDINATES: protein motif:HMM:NF018755.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HEX2815974.1"
                     /translation="MSRSVAAIAAVLAVWASAPQAGHAQAPQEAPALDRTLEELPQVK
                     REGAQVDRFSGKLVLVLLDDKDHPSIKGGRSLWGVEKPLSYRPNGTTDEITVPPGFVT
                     DLASIPRWAWSVLPPDGPWVKAAVIHDFLYQTKGTGVWKGHPSGNSRPQPYTRAESDG
                     ILREAMEDRGVGPTARNIIWAAVRVGGSGGWGS"
     gene            1406..1750
                     /locus_tag="VHN39_06260"
     CDS             1406..1750
                     /locus_tag="VHN39_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815975.1"
                     /translation="MATHLQRAGPDAPPAWRLTEALDDKLAELRGQGFEVVWIECSRE
                     DLTRLVIEGGEAAIRLDPDPSVDRAWYGDAEIRHSSTRDLTWVFVKGEVAAGEVSAHV
                     VGPPDPPAPESA"
     gene            1858..>2901
                     /locus_tag="VHN39_06265"
     CDS             1858..>2901
                     /locus_tag="VHN39_06265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815976.1"
                     /translation="MAGSNERIYRSLRGLEKTASTSRVLNLAALAVQNTGNPEHLAKP
                     LFKSPVLNGSVVLKHRLRVDEVDLFDGLARTATKIIVPFDKSDLSLGGRTVFVGEKGW
                     MPVLQELRGGSDDMLRDVEILEAINELPSLDPFLLREHMKRRGHDISPTHFDISPGDV
                     DKMQRFVGGEIARLIELAYGGAGSGGATGRLVEALLSSKTDERLEPLRLTLQLEGDSY
                     REGIFSWKGFLYYKWVLNSLWPKLKEVLIEVMKLRVLGPRDRDLMVLIDEMKLRLRGA
                     MENQVKAVMGYLKTYDAVFAQLTEGNAIAFRDFLLASPEMFMALGEGAGTLSHVATFW
                     RYRFPAGKPLMAPM"
BASE COUNT          475 a          991 c          962 g          473 t
ORIGIN      
        1 attctaccct gacgcgaaat tcgcccatca aatgaggctt cggacttcca tcccgggttg
       61 aaatcaaccg gtcgcttcga aacaaatcat gaacaacatt tctttggccc cggccggtcg
      121 gggccttacc ctgcccggtt gggcctccgc cacgcccgcc ggtctttccc aagtcgaaaa
      181 ccccaggggc cgcgggcatg gcccttgagg tcatgttcga gaacgaggct tacggcgccc
      241 gccgcagcgg ctaagcttcc tcgaggggga aaacgccatg accaccaaag agatgaccac
      301 gctcagcctg ctgggcttcg gcatctggct gtcgggggcg gtgatgttcc gcttcggcgg
      361 ggggctgatg ttcgagcacg gcccctgggt gctggcggcg agcggcgtgg gcatcgcctt
      421 cagcgtctgc ctcctgctct ccagcatcat ggggtggcgc aagacgccga cctccctggc
      481 ggtgacggcg gcggtggtca tgaccctgcc gggcctgttc ggcgacgtgg cctatgtgct
      541 ggccttccac cagatcaccg gcctcggggc cgccaccgcc gggccctacg ccgcggtggt
      601 gatcttcgga acggcggtgc tcttcgccta cgcccttttc ctcgcccggc cggcccgacc
      661 ctagagcggc gatcgcccag gcttggcggc gcccgcagaa cgggcaatag tctcctcact
      721 cagccttggg gggagtgggc tcatgagccg gtccgtcgca gcaatcgccg ccgtgctcgc
      781 cgtctgggcc tcggcgccgc aggccggcca cgcgcaggcc ccgcaggagg cgccagcttt
      841 ggatcgcacc ctggaggagc taccccaggt caaacgggag ggcgcccagg tggaccgttt
      901 cagcggcaag ctcgtcctcg tcctgctgga cgacaaggac catccctcga tcaagggtgg
      961 acgcagtctc tggggcgtcg agaagcctct gagctatcgg cccaacggca cgaccgacga
     1021 gatcaccgtg ccaccgggct tcgtcacgga cctcgcctcg atcccgcgct gggcctggtc
     1081 ggtgctgccg ccggacgggc cctgggtgaa ggccgcggtg atccacgact tcctctacca
     1141 gaccaagggc acgggggtct ggaaggggca tccgtcgggc aacagccggc cgcaacccta
     1201 cacccgcgcc gagtccgacg gcatcctgcg cgaggccatg gaggaccgcg gcgtcggtcc
     1261 cacggcccgc aacatcatct gggcggcggt ccgcgtcggc ggctccggcg gctggggcag
     1321 ctagtgcggc cgatcgtccg gggacgcacc atttggcgat aacgggttat ttggcgttaa
     1381 ccggcaaatc gctaccatgg ggtgcatggc gactcacctg caacgcgccg gacctgacgc
     1441 cccgcccgcc tggcggttga ccgaggcttt ggacgacaag ctggccgaat tgcgaggtca
     1501 gggcttcgag gtcgtctgga tcgaatgctc ccgggaagac ctgacgcgcc tggtcatcga
     1561 gggcggcgag gcggcgatcc ggctcgaccc cgacccgtcc gtcgaccgcg cctggtacgg
     1621 cgatgcggaa atccgccaca gctcgacccg cgacctgacc tgggtgttcg taaagggcga
     1681 ggtggccgcc ggcgaggtca gcgcccatgt ggtcggcccg ccggatccgc cggcgcccga
     1741 aagcgcctga acggcccgcg accgagcgcc gccctttaac ggtcccttgg ggtttgcatg
     1801 ggatgcatgg cgctctaggg ccgtggaagc ggttcgcacc agaccggatg gtcccaagtg
     1861 gcgggttcca acgagcgcat ctaccgaagc ctccgcgggc tggaaaagac ggcctcgacg
     1921 agccgtgtgc taaacttggc cgcgctggcg gtgcagaaca ccggcaaccc cgaacacctc
     1981 gccaagcccc tgttcaagag cccggtcctc aatggctcgg tggtgctgaa gcatcgcctg
     2041 cgggtcgacg aggtcgatct gttcgacggc ctggcccgca cggccaccaa gatcatcgtg
     2101 cccttcgaca agtcagacct gtcgctgggc ggacgcacgg tgttcgtggg cgagaagggc
     2161 tggatgccgg tcctccagga actgcgcggc ggctccgacg acatgctgcg cgacgtcgag
     2221 atcctggaag cgatcaacga actgccctcg ctcgacccct tcctgctgcg tgagcacatg
     2281 aagcgccggg gccacgacat cagtccgacc cacttcgaca tctcgcccgg cgacgtggac
     2341 aagatgcagc gcttcgtcgg cggcgaaatc gcccgcctga tcgagctcgc ctatggcggc
     2401 gccgggtccg gcggggccac cggccgtctg gtcgaggcgc tcttgtcctc caagaccgac
     2461 gaacggctgg agccgcttcg cctgaccctg caactcgagg gcgacagcta ccgagagggc
     2521 atcttcagct ggaagggctt cctctactac aagtgggtcc tgaacagcct ttggcccaaa
     2581 ctcaaggaag tgctgatcga ggtcatgaaa ctgcgggtcc tcggtccacg cgaccgcgac
     2641 ctgatggtgc tgatcgatga gatgaagctg cgcctgcgcg gggccatgga aaaccaggtc
     2701 aaggcggtga tgggctatct gaagacctat gacgcggtct tcgcccagct caccgaaggc
     2761 aacgccatcg ccttccgcga cttcctcctg gcctcgcccg agatgttcat ggcgctcggc
     2821 gaaggcgccg gcacactcag ccacgtggcc accttctggc gctaccgctt cccggcgggc
     2881 aagccgctga tggcgcccat g
//
LOCUS       DATAJL010000320         1602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105588,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000320 DATAJL010000000
VERSION     DATAJL010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105588"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /locus_tag="VHN39_06270"
     CDS             complement(<1..328)
                     /locus_tag="VHN39_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815977.1"
                     /translation="MRRRLAALATLPLLFLGSNAQAASVDPVGDLIMSVVSGALPAGP
                     GWNLKATLYHAGAKGVGALDALGCRVVAMRTVAVDKTLIPKRSVLFIKETVGLKMPDG
                     SVHDGYW"
     gene            519..1106
                     /locus_tag="VHN39_06275"
     CDS             519..1106
                     /locus_tag="VHN39_06275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2815978.1"
                     /translation="MKIYGDSISGNCLKVKWVADSLGFSYDWIETDVTKAESRTPAFL
                     AMNPAGQVPTVILNDGRPLAQSNAIILHLAEGSALIPANAYERAKMLEWMFWEQYSHE
                     PYIAVARFQLAHLGKTLADLDPKVIPRGVAALQRMEDGLANTPFLAGDALSLADVALV
                     AYTRVAEEGGGFDLSGYPRIKAWIPRVEKALKIAA"
     gene            1148..>1602
                     /locus_tag="VHN39_06280"
     CDS             1148..>1602
                     /locus_tag="VHN39_06280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="S1/P1 Nuclease"
                     /protein_id="HEX2815979.1"
                     /translation="MKRALATGLAVLLIALPSTVFGWGSTGHRFIGEVAMRALPAEIP
                     AFLRAPQAAIDVGEYSREPDRSKGAGRVHDADRDPGHFLDLNDDGTVLGGPALAALPA
                     TRAEFDAGVRKAGADSWKSGYLPYSIIDRWEQLARSMAYWRVLAAAEANP"
BASE COUNT          261 a          564 c          527 g          250 t
ORIGIN      
        1 accagtagcc gtcgtgcacc gagccgtcgg gcatcttcag gccgacggtt tccttgatga
       61 acagcacgct gcgcttcggg atcagggtct tgtcgacggc cacggtgcgc atggccacga
      121 ccctgcagcc gagcgcgtcc agcgcgccca cgcccttggc gccggcatgg tacagggtgg
      181 ccttcaggtt ccagcccggt ccggcgggca gggcgcctga gaccaccgac ataatcagat
      241 cgcccacggg atcgacggac gcggcctgtg cgttggagcc taggaagagc agcggaaggg
      301 ttgccagagc ggcgaggcgg cgtcgcaaga cggctcctcc ttcgtcgttg aactggtgta
      361 gccccagttt tagccggttg ccgcaggccc gccaaccccg catgggacgt gacgccttgc
      421 cttgtcagca tatctaacag cctcctgcag acgagatcgc ttgcgccctc agggcggatc
      481 gggcctctga cccggtcaag cttcaggggt tcagcgccat gaaaatctat ggggattcca
      541 tctccggaaa ctgcctgaag gtgaagtggg tcgccgactc gctggggttt tcctacgact
      601 ggatcgagac cgatgtgacc aaggccgaga gccgtacgcc ggccttcctg gcgatgaatc
      661 cggccggcca ggtgccgacc gtgatcctca acgacgggcg cccgctcgct cagtccaacg
      721 ccatcatcct gcacctggcg gagggctcgg ccctgatccc ggccaacgcc tatgagcggg
      781 ccaagatgct cgagtggatg ttctgggagc agtacagcca cgagccctat atcgccgtgg
      841 cgcggttcca gctggcccac ctcggcaaga ccctcgccga cctggacccc aaggtcatcc
      901 cgcgcggcgt cgcggccctg cagcggatgg aggacggcct ggcgaacacc ccgttcctgg
      961 cgggtgatgc gctcagcctc gccgacgtgg cgctggtggc ctacacgcgc gtcgccgaag
     1021 agggcggtgg gttcgacctg agcggctacc cccggatcaa ggcctggatc ccccgcgtcg
     1081 aaaaggcgtt gaagatcgcc gcctgagccc cttgcctttg gggaggcgag ccgacaaacc
     1141 ggagggcatg aaacgcgccc tcgccactgg cctcgccgta cttctcatcg ccctgcccag
     1201 caccgtcttc ggctggggca gcacaggcca ccgcttcata ggcgaggtgg ccatgcgcgc
     1261 cctgccggcc gagatcccgg ccttcctgcg cgcaccccag gccgccatcg atgtcggcga
     1321 atattcccgc gaaccggacc gctcaaaggg cgcgggccgg gtgcacgacg ccgaccgcga
     1381 ccccggccac ttcctcgacc tgaacgacga cggcacggtg ctgggcggcc cggcgctcgc
     1441 cgccctgccg gccacgcggg cggagttcga cgcaggcgtc cgcaaggccg gcgccgacag
     1501 ctggaagtcc ggctacctgc cctattcgat catcgaccgc tgggagcagc tggccaggtc
     1561 catggcctac tggcgcgtgc tggccgccgc tgaagccaat cc
//
LOCUS       DATAJL010000321         4940 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105589,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000321 DATAJL010000000
VERSION     DATAJL010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4940
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105589"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            408..572
                     /locus_tag="VHN39_06285"
     CDS             408..572
                     /locus_tag="VHN39_06285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815980.1"
                     /translation="MHSDQPEVRPHKNKHVAERFEGLLGTMMVVVVVLLAIGAVYMVV
                     TGDSTPSWMR"
     gene            705..1493
                     /locus_tag="VHN39_06290"
     CDS             705..1493
                     /locus_tag="VHN39_06290"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEX2815981.1"
                     /translation="MSGRVQGKVALITGGASGSGLGCAEKLAAEGATAVITDLQDDKG
                     AQAVAAIGKAGGKAWYLHHDVTDEAAWEAVIAEVKAREGRLDILVNNAGIGIGGSILE
                     MTLADWKRQMAVNLDGVFLGVKHSIPLMRSSGDGGSIINMSSVAGLKGSAILAGYSAT
                     KGGVRLFTKGVAMECANAKDGIRVNSVHPGIIDTPIWTTIGVTTNPGANAPPDLDALS
                     TMAVPLGVKGYPEDIANGVLWLASEESRYVTGAELVIDGGLSVR"
     gene            1505..2005
                     /locus_tag="VHN39_06295"
     CDS             1505..2005
                     /locus_tag="VHN39_06295"
                     /inference="COORDINATES: protein motif:HMM:NF025052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2815982.1"
                     /translation="MGAILNVIFGPCGAGKTTYAHAFARREKAVAFILDDWMARLFGP
                     DMPEPIQYDWMIERVGRCEGQIWATAAGVLAAGTPVILDIGLMRKADRARVREIAQAT
                     GLDLKFHFVDAPAEVRRARVLDRNVVRGESFAIEVTPDLFEFIEGVYEAPEPEELTGA
                     VMSLSD"
     gene            2016..2675
                     /locus_tag="VHN39_06300"
     CDS             2016..2675
                     /locus_tag="VHN39_06300"
                     /inference="COORDINATES: protein motif:HMM:NF014664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEX2815983.1"
                     /translation="MGKTTGPVFAAALTLTVGGLGIASAGASGAAERFPTLTPDQMTP
                     AQRKVAEAIQAGPRKGLGGPFNTWLRSPELADKLQQVGEHLRFHSSVPPRLNEFAILL
                     TARAWDADYEWSAHYPLALKAGLNPAIADDVAKGRRPAGMAADETAVYDFVTELRATH
                     RVSDPTYAAAQKVLGDQGVVDLVALSGYYDLVSMTLNVGQVAAPADGPRLPPPVKRTK
                     P"
     gene            2672..3643
                     /locus_tag="VHN39_06305"
     CDS             2672..3643
                     /locus_tag="VHN39_06305"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX2815984.1"
                     /translation="MRAYILTDQGPAMRDAPKVPPKQGQVLVKVAANGLNRVDLAMST
                     GALHGARGGVGTVLGSEWSGTVEAIGPGVTEYAEGDRVMGASASAFAEYVCVHAAHVL
                     PIPDANMSFEEAACFPVALRTMHDAIVTEGRLAEGETVLIQGASSGVGLLGLQIAKVM
                     GAKQVIGSSTDPGRRAKLAEYGADLAVDSGDVAWVDQVLEYTRGQGVDLIVDQVSGNL
                     VNANMRAAKIQGRIVNVGRLGGTRSEFNADLHALRRISYIGVTFRTRTLDEIAVINRR
                     SRDDLWEALSTGKLKLPVDSTFAFAEVEAALGKMARNQHFGKIVLRH"
     gene            complement(3664..4296)
                     /locus_tag="VHN39_06310"
     CDS             complement(3664..4296)
                     /locus_tag="VHN39_06310"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2815985.1"
                     /translation="MASPRGITLYHSPASRAFTAYWMLEELGVPFSVKTIDIRKGEQK
                     APAYLKLNPAGKVPTLTDGPVVVSENPAIAIYLADRYGYGTFAPRMDEADRGPYLKWM
                     VFSTAVVDPVATLHEQKIDLPGFNFSFGAFGDMVEVVTGVLRDREFLLGERFSAADVV
                     LGGTLSRLLYQKVLPQDPVLLDYNARLTAREAFQRAADATWPSHLFPTPA"
     gene            4379..4756
                     /locus_tag="VHN39_06315"
     CDS             4379..4756
                     /locus_tag="VHN39_06315"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2815986.1"
                     /translation="MPARDRVQAFVTLVEGAHYVEALEQFYHPDATMQDNQQPPRLGL
                     ERLIADERATMARFQTMATDKVTDLLIDGDKVTIRWRFTFTPAEGPPMVMEEITLQRW
                     AGDRIAEERFFYDPRPTRPPPPI"
BASE COUNT          834 a         1615 c         1712 g          779 t
ORIGIN      
        1 gcaccgcgct gatgatgaag acgccctact acacgaccgc tgcgggcgcc ctggcggcgg
       61 ctcaggccat cgtggctacg gtggaagaca ccctcgaagt gcggccgctg cagagctacg
      121 cctgaggcgg gcctgtttac cgtcttgccg gatctcgcgc gcgggcggct ggcgctcagg
      181 ttattcggca agatttgacg gccgccagcg gcgatgggcc aagttcaggc caagctttca
      241 ttgaccgacc atcaattgaa gcgcagattc cgtcgcagtg cctgactgat gcaggcccat
      301 gggtgcgctc cggcggcccc agaatagacc ggccgggacg acgccgcttg gcgtctgccg
      361 cagtctggcg ggggcaaaga acccccagca gattgggagg atgctctatg cactctgatc
      421 aaccggaagt ccggccacac aagaacaagc acgtggccga gcgattcgaa ggccttctgg
      481 gcacgatgat ggtcgtcgtc gtcgtcctac tggcgatcgg cgcggtgtac atggtggtca
      541 ccggcgactc gacaccgagc tggatgcgct gaccgcctga ccggccgacg cccgcgagga
      601 cgctggccga acgacaatct cggcccgctc aagccgcctg acgctggcgg cgagccgcgc
      661 tgtgggctag gcctccgttc aatcaacaag gatgggaggt cggcatgtct gggcgcgtac
      721 agggcaaggt ggcgctgatc accggcgggg ccagcggcag cggactgggc tgcgctgaaa
      781 agctggccgc cgagggcgcc accgccgtca tcaccgatct gcaggacgac aagggcgccc
      841 aggccgtggc tgccatcggc aaggccggcg gcaaagcttg gtatctgcat cacgacgtca
      901 ccgacgaggc cgcctgggag gccgtgatcg ctgaggtgaa ggcccgcgag ggccggctcg
      961 acatcctggt caacaacgcc ggcatcggca ttggcggttc gatcctggag atgacgttgg
     1021 ccgactggaa gcggcagatg gcggtcaatc tcgacggggt cttcctgggc gtgaagcatt
     1081 cgatcccgct gatgcgttcg tcaggagacg gcggcagcat catcaacatg tcctcggtgg
     1141 ccggcctcaa gggctcggcg atcctggccg gctattcggc gaccaagggc ggtgtgcggc
     1201 ttttcaccaa gggcgtggcg atggaatgcg ccaacgccaa ggacggcatt cgggtgaact
     1261 ctgtgcatcc cggcatcatc gacaccccca tctggacgac gatcggagta accaccaacc
     1321 ccggcgccaa cgctccgccg gacctggacg cgttgtcgac catggccgtg ccgctgggcg
     1381 tcaagggcta tccggaggac atcgccaatg gcgtgctgtg gctggcgtcg gaggaaagcc
     1441 gctacgtcac cggcgccgaa ctggtgatcg acggcggtct ttcggtcagg tagcaagctt
     1501 ctctatgggc gccatcctga atgtcatctt cgggccctgc ggggcgggca agacgaccta
     1561 tgcgcacgcc ttcgcgcggc gcgagaaggc ggtggccttc atcctcgacg actggatggc
     1621 gcggctgttc ggccccgaca tgcccgagcc gatccagtac gactggatga tcgagcgcgt
     1681 gggccgctgc gagggacaga tctgggcgac ggcggcgggc gtgctggcgg ccgggacccc
     1741 ggtgatcctg gacataggcc tgatgcgcaa ggccgaccgg gcccgcgtgc gggagatcgc
     1801 ccaggcgacg ggcctggacc tgaagtttca cttcgtggac gctccagccg aggtgcggcg
     1861 cgcccgcgtg ctggaccgca atgtcgtgcg cggcgaaagc ttcgccatcg aggtcacccc
     1921 cgatctcttt gaattcatcg agggcgtcta cgaggcgccg gaaccggaag aattgactgg
     1981 agccgtcatg agcctcagcg attaggagga acgccatggg caagacgact ggacccgtct
     2041 tcgccgccgc cctgacactt acagttgggg gactggggat cgcctccgcc ggggcctccg
     2101 gcgccgcgga gcgtttcccg acgctgaccc ccgaccagat gaccccggcc cagcgcaagg
     2161 tggccgaagc gattcaggcc ggcccccgta aggggctggg cgggccattc aacacctggc
     2221 tgcgcagtcc cgagctcgcc gataagctgc agcaggtggg cgaacacctg cgctttcact
     2281 ccagcgtgcc gccccggctg aacgaattcg cgatcctgct caccgcgcgc gcctgggacg
     2341 ccgactacga gtggtcggcg cactatcccc tggcgctgaa ggccgggctg aaccccgcca
     2401 tcgccgacga tgtcgccaag ggcaggcgcc cggctggcat ggccgccgac gagaccgcgg
     2461 tctacgattt cgtcactgag ctgcgcgcca ctcatcgggt gagcgatccg acctatgccg
     2521 ccgcccagaa ggtgctgggc gaccaggggg tcgtcgatct ggtggcgctc tcgggctact
     2581 acgatctggt ctccatgacc ttgaacgtgg gccaggtggc cgctccggcg gatggacccc
     2641 ggctgccgcc gcccgtgaag aggacaaagc catgagagcc tacatcctga ccgaccaggg
     2701 tccggccatg cgcgatgcgc cgaaggtgcc gcccaaacag ggccaggtgt tggtcaaggt
     2761 cgccgcaaat ggcctgaacc gggtggacct ggcgatgtcc accggcgcgc tgcacggcgc
     2821 gcgcggcggg gtgggcacgg tcctgggttc ggagtggtcg ggaaccgtcg aggcgatcgg
     2881 tccaggggtc acggaatacg ccgagggcga ccgggtgatg ggcgccagcg cctcggcctt
     2941 cgccgaatac gtctgcgtcc acgccgccca cgtgctgccg atccccgatg cgaacatgag
     3001 tttcgaggag gccgcgtgtt tcccggtggc gctcaggacc atgcacgacg ccatcgtcac
     3061 cgagggccgg ttggccgagg gcgagacggt gctgatccag ggggccagca gcggcgtggg
     3121 gttgctcggg cttcagatcg ccaaggtgat gggcgccaag caggtcattg gctcgtccac
     3181 cgaccccggc cgccgcgcca aactggccga atacggcgcc gatctggcgg tggattccgg
     3241 cgatgtggcc tgggtggacc aggtgctgga atataccagg ggccagggcg tcgacctgat
     3301 cgtcgaccag gtctcgggca atctcgtcaa cgccaacatg cgcgccgcca agatccaggg
     3361 gcggatcgtc aatgtcggcc ggctcggcgg cacccgcagc gagttcaacg ccgacctgca
     3421 tgctcttcgc aggattagct acatcggcgt cacgttccgc acacggacgc tggacgagat
     3481 cgccgtgatc aaccgccgct cgcgcgatga cctctgggag gcgctctcca ccggcaagct
     3541 gaagctgccg gtcgactcga ccttcgcctt cgccgaggtg gaggcggcgc tgggcaagat
     3601 ggcccgcaac cagcacttcg ggaagatcgt gctgcggcac tgaccacagc ccgggaggac
     3661 ggctcaggcc ggcgtcggga agaggtgcga gggccaggtg gcgtcggcgg cgcgctggaa
     3721 ggcctcgcgg gcggtgaggc gcgcgttgta gtcgagcagc accgggtcct gcggcaggac
     3781 cttctggtag agcagccgcg aaagcgtgcc gcccagcacc acgtcggccg cgctgaaacg
     3841 ctcgcccagc agaaattcgc gatccctgag gacgccggtg accacctcga ccatgtcgcc
     3901 gaaggcgccg aagctgaaat tgaaccccgg caggtcgatc ttctgctcgt gcagggtggc
     3961 gaccggatcg accacggcgg tcgagaacac catccacttc agatatggcc ctcggtcggc
     4021 ctcatccatc cggggcgcga acgtgccgta gccgtagcgg tcggccaggt agatggcgat
     4081 cgccgggttc tcgctgacca ccaccggccc gtcggtgagg gtcggcacct tgccggccgg
     4141 attgagcttc agataggccg gcgccttctg ctcgcccttg cggatgtcga tggtcttgac
     4201 gctgaacggg acgcccagct cctccagcat ccagtaggcc gtgaaggccc ggctggccgg
     4261 cgagtggtag agggtgattc cgcgcgggct cgccatggct gtctcctgga ccaacgccta
     4321 actagggtgg cgttgcgtcc gccgccacca cacccgcttc agaatgggga gtccatcaat
     4381 gcccgcccgg gaccgcgtcc aggccttcgt cacgctggtg gagggcgcgc attatgtcga
     4441 ggcgttggag cagttctacc atcccgacgc caccatgcag gacaaccagc agccgccgcg
     4501 actgggcctg gaacggctga tcgccgacga gcgggcgacc atggcgcgct tccagacgat
     4561 ggccaccgac aaagtgaccg acctgctgat cgacggcgac aaggtgacga tccgctggcg
     4621 gttcaccttt accccggccg agggcccgcc catggtgatg gaggagatca ccctgcagcg
     4681 ctgggcgggc gaccgcatcg ccgaggagcg attcttctac gaccctcgcc cgacgcgccc
     4741 gccgccccca atttgatggg tcatgggagc cggcgggtca tgatggggtc gcaaagcgcg
     4801 accacactgc ctacatgtcg ccggtggggg gcaagccggg ctttcagata gcgccggttt
     4861 cgtcaccttg cgttttgcgg cgcacaattc tatcctcttt cccctcccgg acgcctgcgc
     4921 ccgcggccgg atatttacgg
//
LOCUS       DATAJL010000322         3502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44300,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000322 DATAJL010000000
VERSION     DATAJL010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3502
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44300"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            257..2548
                     /locus_tag="VHN39_06320"
     CDS             257..2548
                     /locus_tag="VHN39_06320"
                     /EC_number="1.1.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004470 - malic enzyme activity [Evidence
                     IEA];
                     GO_function: GO:0004471 - malate dehydrogenase
                     (decarboxylating) (NAD+) activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HEX2815987.1"
                     /translation="MSDAEKRTFTDEEALNFHRYPTPGKIAIAATKPMATQRDLSLAY
                     SPGVAVPVLAIAKDPDAVYEYTSKGNLVGVVSNGTAILGLGDLGPLAAKPVMEGKGVL
                     FKRFADVDAIDIEITATDPDEIITVVKNLGPTFGGINLEDIKSPECFIVEAALQELMD
                     IPVFHDDQHGTAIISAAGLINVCHLTGRELKDVKVVLNGPGAAGIATLDLLKAMGVPH
                     DNCIAVDTKGVVYKGRAEAMNQWKSAHAVETDKRTLAEALKGADVLIATSVKGAITQE
                     DIRLMAPNPVIFAMANPDPEIRPEEVYEVRPDAIVATGRSDYPNQVNNVLGFPYIFRG
                     ALDVRARRVNMEMKIACANALAMLAREDVPDEVAAAYQGVQLKFGPQYIIPTPFDPRL
                     IWYIPPFIAQAAMDTGVARKPIEDMDAYRASLAQRLDPTAAFLQKLQGAVLSAPKKRI
                     VFTEGEEPSVIRAAYAFQNAGLGTPILIGREELVHENMLAVGLDPAEAKLEVLNARLS
                     HRNAAYVDHLYERLQRIGYLRRDVQRLINQDRNAFGASMVAMGDADGMVTGVTRAFDQ
                     VLEEVLQVVDASPDGRIIGMSVVLAKGRTLFIADTSITEMPEAEDLVEIAQEAARAVR
                     VLGYEPRVAFMSYSTFGNPMGLRSDKVREAVAMLDEMEGVDFEYEGEMPPELALEPES
                     RGNYPFMRLTGPANVLIMPAVHSAAISTQLIQSLGGATVIGPILLGLDRAVQICPLSA
                     SVSKILQMATVCAYERQLVETES"
     gene            2638..>3502
                     /locus_tag="VHN39_06325"
     CDS             2638..>3502
                     /locus_tag="VHN39_06325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007663370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX2815988.1"
                     /translation="MSSALSPPSLCLGIDFGTTNTVVALADASGPAHLVRFPAPEGEL
                     FAFRSCLSFHAGDKPNDRSVAAGPWAIDAYVEDPADTRFIQSFKSFAASESFSETTVL
                     NRRYRFEDLLSTFLLKLRAYADAGMAELPDRVIVGRPVTFAGAAPSEPLALSRYETAF
                     ERMGFSEILYAYEPVGAAFFFARDLDRDATVLVGDFGGGTSDFSIIRFERHAGEIRAI
                     PLGRSGVGVAGDAFDYRIIDNLVSPALGKGSSYSSFGKVLPIPNRYYSTFARWDQLAL
                     MRASRDMREIRS"
BASE COUNT          592 a         1251 c         1112 g          547 t
ORIGIN      
        1 gggccgggcc ggcgatggcg atggcggcgg cgagcgccgc gtagggaagg atcttggtca
       61 tgatggactc ccgtctcgaa tgaccccctc tcagccctgc catagcgggc cggcccccag
      121 gtttgttcca aaaccgcaat cccgcccgca acattggacc ccacagccaa gctcgaccga
      181 ggttgtttca aatggccggg gtctctaagg tccgcctctc atcgcaaccc gacgccccaa
      241 aggacccgcc gccgccatga gcgacgccga gaaacgaacc tttaccgacg aggaagccct
      301 caacttccac cggtacccga cgcccgggaa gatcgcgatc gcggccacca agccgatggc
      361 gacccagcgc gacctgagcc tcgcctattc gccgggcgtc gcggtgccgg tcctggccat
      421 cgcgaaggac ccggacgcgg tctacgaata cacctccaag ggcaacctgg tgggcgtggt
      481 ctccaacggc actgcgatcc tgggcctggg cgacctgggc ccgctggcgg ccaaaccggt
      541 gatggagggc aagggcgtgc tcttcaagcg cttcgccgac gtcgacgcca tcgacatcga
      601 gatcacggcc accgacccgg acgagatcat caccgtggtc aagaacctcg gcccgacctt
      661 cggcggcatc aacctggagg acatcaagtc gccggagtgc ttcatcgtcg aggcggcgct
      721 gcaggaactc atggacatcc cggtgttcca tgacgatcag cacggcacgg cgatcatctc
      781 cgccgccggc ctgatcaacg tctgccacct gaccggccgc gagctgaagg acgtcaaggt
      841 cgtgctgaac ggcccgggcg ccgccggcat cgccaccctg gacctcctca aggccatggg
      901 cgtgccgcac gacaactgca tcgcggtgga caccaagggc gtcgtctaca agggccgcgc
      961 cgaggcgatg aaccagtgga aatcggccca cgccgtcgag accgacaagc gcacgcttgc
     1021 cgaggcgctc aagggcgccg acgtgctgat cgccacctcc gtgaagggcg cgatcaccca
     1081 ggaggacatc aggctgatgg cccccaatcc ggtaatcttc gccatggcca accctgatcc
     1141 ggaaatccgc ccggaagagg tctacgaagt ccgccccgac gccatcgtgg ccaccgggcg
     1201 cagcgactac ccgaaccagg tgaacaacgt cctgggcttc ccctacatct tccgcggcgc
     1261 gctggatgtg cgggcccggc gggtgaacat ggaaatgaag atcgcctgcg ccaatgcgct
     1321 ggccatgctc gcgcgggaag acgttccgga cgaagtcgcc gccgcctatc agggcgtcca
     1381 gctgaagttc ggcccgcagt acatcatccc cacgcccttc gatccccggc tgatctggta
     1441 catcccgccc ttcatcgccc aggcggcgat ggacaccggg gtcgcccgca agcccatcga
     1501 ggacatggac gcctaccgcg ccagcctcgc tcagcggctc gatccgaccg cggccttcct
     1561 gcagaagctg cagggcgcgg tgctctcggc gcccaagaag cgcatcgtct tcaccgaggg
     1621 cgaggagccc agcgtgatcc gcgcggccta cgccttccag aacgcgggcc tcggcacgcc
     1681 gatcctgatc ggccgcgagg agctggtgca cgagaacatg ctggccgtcg gcctcgatcc
     1741 ggccgaggcg aagctagagg tcctcaacgc gcggctttcg caccgcaacg cggcttacgt
     1801 ggaccatctc tatgagcggc tgcagcggat cggctacctg cgccgcgacg tccagcggct
     1861 gatcaaccag gaccgcaacg ccttcggcgc ctccatggtg gccatgggcg acgccgacgg
     1921 catggtcacc ggcgtgacgc gggccttcga ccaggtgctg gaagaggtgc tgcaggtggt
     1981 cgacgcctcg ccggacggcc ggatcatcgg catgagcgtg gtgctggcca aaggccgcac
     2041 cctgttcatc gccgacacct cgatcaccga gatgcccgag gccgaggacc tggtggagat
     2101 cgcccaggag gcggcccgcg ccgtccgcgt tctgggctac gagccgcgcg tggccttcat
     2161 gagctactcg accttcggca accccatggg cctgcgctcg gacaaggtgc gcgaggccgt
     2221 ggccatgctc gacgagatgg agggcgtcga cttcgaatat gagggcgaga tgccgccgga
     2281 actggccctg gagccggaaa gccgcggcaa ctacccgttc atgcgcctga ccggaccggc
     2341 caatgtgctg atcatgcccg cggtccactc cgccgcgatc tcgacccagc ttatccagtc
     2401 cttgggcggg gccacggtga tcggcccgat cctgctcggc ctcgaccgcg cggtgcagat
     2461 ctgcccgctc tcggcctcgg tctcgaagat cctgcagatg gccaccgtct gcgcctacga
     2521 gcggcagctg gtggagaccg agagctgatg cggatggcgc ctgtcagcct gatctagggt
     2581 cgcgcgccgt ttggggaagc gggcgactcg tcgtccatcc ccggaaagga gcgcgtgatg
     2641 agttcggccc tgagcccccc atctttgtgt ttgggcatcg acttcggcac gaccaacacg
     2701 gtcgtggcgc tcgccgacgc gtcggggcca gcgcacctcg tccgctttcc cgcgccggaa
     2761 ggcgagctct tcgccttccg ctcgtgcctc tccttccacg ccggcgacaa gccgaacgac
     2821 cggtccgtcg ccgccgggcc ctgggccatc gacgcctatg tggaagatcc ggccgacacc
     2881 cgcttcatcc agtcgttcaa gtccttcgcg gcctcggaga gcttcagcga gaccacggtg
     2941 ctgaaccgcc gctaccgctt cgaagacctg ctctcgacct tcctcttaaa gctgcgcgcc
     3001 tatgccgacg ccggcatggc cgaactgccc gaccgggtga tcgtcggccg cccggtgacc
     3061 ttcgccggcg ccgcgcccag cgagccgctg gcgctgtcgc gctacgaaac ggccttcgaa
     3121 aggatgggtt tctccgaaat cctctatgcc tacgaaccgg tgggggcggc cttcttcttc
     3181 gcccgagacc tggatcgtga cgccaccgtc ctggtgggcg acttcggcgg cggcacctcg
     3241 gacttctcga tcatccgctt cgagcgccac gcgggcgaaa tccgcgccat tccgctcggc
     3301 cgctcgggcg tgggcgtggc gggcgacgcc ttcgactacc ggatcatcga caacctggtc
     3361 tcgccggcgc tgggcaaggg gtcgagctat tccagcttcg gcaaagtcct gccgatcccc
     3421 aatcgttact attcgacctt cgcccgctgg gaccagctgg ccctgatgcg cgccagccgc
     3481 gacatgcgcg agatccgcag cc
//
LOCUS       DATAJL010000323         3623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92686,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000323 DATAJL010000000
VERSION     DATAJL010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3623
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92686"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..199
                     /locus_tag="VHN39_06330"
     CDS             <1..199
                     /locus_tag="VHN39_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815989.1"
                     /translation="IHIGQAVLNLEGTLDYFVENTFNYPTLAEAYKIAALDAWNRMPK
                     QQASVIATAKALERARKVVNG"
     gene            complement(196..678)
                     /locus_tag="VHN39_06335"
     CDS             complement(196..678)
                     /locus_tag="VHN39_06335"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX2815990.1"
                     /translation="MTGAPGSRSAGSRAVARRTAFSPLEALGDWRAEVSDEAAGETLN
                     LAPDPVEDAAFALTQRRDGFGSDEVQSGSGSRGTADAGAMSSSGSAMSSGGGGLGAGG
                     AQGPDVGGVATDSGNPMASDLTAPTAPGPVPEPETWTLLVLGAGLAGATLRRRARRVA
                     "
     gene            1168..2247
                     /locus_tag="VHN39_06340"
     CDS             1168..2247
                     /locus_tag="VHN39_06340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2815991.1"
                     /translation="MGVAADTIILGDCLEELKKLPSRSVDLVFADPPYNLQLGGDLLR
                     PDNSKVDAVDDHWDQFESFAAYDAFTKAWLSECQRILKDDGALWVIGSYHNIFRVGAT
                     LQDLGFWILNDIVWRKSNPMPNFKGTRFTNAHETMIWATKSRGGKRYTFNYDAMKMAN
                     DDLQMRSDWSLPLCTGEERLKDEAGVQAHPTQKPEALLCRVILASTRPGDVILDPFFG
                     TGTTGAAAKRLGRHYIGIEREEAYARLAKARIAKVIPATAAEMVVTGSKRSEPRIPFG
                     QIVEAGLLRAGDVLYDDKGRHAASVRADGSLVVGDLSGSIHKVGAMVQSQPACNGWTY
                     WHFKTDKGLAPIDVLRAKVRQQLAA"
     gene            complement(2257..2619)
                     /locus_tag="VHN39_06345"
     CDS             complement(2257..2619)
                     /locus_tag="VHN39_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2815992.1"
                     /translation="MITHLKFAGLPCRDQELQLKFWTEKMGFRVTTDQPMGAQRWIEL
                     AIAGSQTGLVLFTPEGHEDRVGTFFNGSFACDDVEATHRQLSERGVEFKGPPEKQPWG
                     TFAIFKDPEGNEFVLSSR"
     gene            2706..3014
                     /locus_tag="VHN39_06350"
     CDS             2706..3014
                     /locus_tag="VHN39_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2815993.1"
                     /translation="MTQKIVLDRYVLDVLMRDLVGHDHTPSAFLVYLWLWGKTDGGKR
                     RFAASLSSIALETGLSKSSVQNAVRQLRQRRKLIAVTHDGPTAPPIYEVLTPWVRIPS
                     "
     gene            3077..3502
                     /locus_tag="VHN39_06355"
     CDS             3077..3502
                     /locus_tag="VHN39_06355"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX2815994.1"
                     /translation="MVATAHASRVIPAEPAEVWETLTSREGMKAFMMGADVETDWRVG
                     GSIAMRGEFNGKPYEDKGEVRSFEPRRRLSYSHTSSAAPAQTHVVTIELRPRSKGTEV
                     TVTQAPAKRADAAADAKNRAQYEKTWAAILEKLEDAVAL"
BASE COUNT          633 a         1249 c         1196 g          545 t
ORIGIN      
        1 gatccacatc ggccaggccg tgctgaacct ggagggcacg ctcgactatt tcgtggagaa
       61 caccttcaac tatccgacgc tcgccgaggc ctacaagatc gcggccctcg acgcctggaa
      121 ccgcatgccc aagcagcagg ccagcgtcat cgccaccgcc aaggcgctgg agcgggcccg
      181 caaagtcgtc aacggctagg ccacgcgccg cgcccggcgg cgcagcgtcg cgcccgcgag
      241 gccggcgccg aggaccagca acgtccaggt ttccggctcc ggaaccgggc ccggcgccgt
      301 tggcgccgta agatccgacg ccatcgggtt gccggaatcc gtcgcgaccc cgccgacatc
      361 gggcccctgg gcgccgccgg cgccgagacc gccgccgcct gacgacatgg ccgagccgga
      421 cgaactcatg gcgcccgcgt ctgcggttcc gcgagacccg gagcccgact ggacctcgtc
      481 cgatccgaat ccgtcgcggc gttgggtcag ggcgaaggcc gcgtcctcga ccggatcagg
      541 ggcgaggttg agcgtctcgc cagccgcctc gtcgctgacc tccgcgcgcc agtcgcccag
      601 cgcctcgagc gggctgaagg cggtgcgtcg cgcgacggcc cttgacccgg cgcttcgcga
      661 gccgggcgcg cccgtcaacg atcgtgggtt cccgcggtgg tgagcagccg attcagggcc
      721 gcccggcagg tccgacgtgt cggccttggc gtcggggccc tggaggagga ggaggtctaa
      781 ctggccgagg acgcctgcgt tggcggcggc cagtaatccg ccgcccagca gggctccaac
      841 caaggcgccg cgccaaatcc acggccggac gggacgggcg gcagaacttg ccaaagggtt
      901 acgcaacaat cccatgcacg cccaaacacc ggaccttctg aaaaaggtcc aacggctaag
      961 ctacggattt taaaagacat tatttggtca cattgacgcc acgccgtggg cgccgaaggt
     1021 ccggggctgg cgtccttcgc gctttttgag cgcttcagcg gccggccggc cgccgcgcgc
     1081 gtaaatttcc ggttcaccaa gtttggcaac gggtccttca ccatgtgggc ccaaggattc
     1141 tgattctgga gtttccaagg gtcagtcatg ggcgttgccg ccgacaccat cattctgggc
     1201 gattgcctcg aggagctgaa gaagctcccg tcgaggtccg tcgatctcgt gttcgccgac
     1261 ccgccctata atctgcagct gggcggcgac ctgttgcgtc ccgacaattc caaggtcgac
     1321 gcggtcgacg accattggga ccagttcgag agcttcgcgg cctatgacgc cttcaccaag
     1381 gcctggctga gcgaatgcca gcgcatcctg aaggacgacg gcgccctttg ggtgatcggc
     1441 agctaccaca acatcttccg ggtcggcgcg accctgcagg atctggggtt ctggatcctc
     1501 aacgacatcg tctggcgcaa gtccaacccg atgccgaact tcaagggcac gcggttcacc
     1561 aacgcccacg agacgatgat ctgggccacc aagtcgcgcg gcggcaagcg ctacaccttc
     1621 aactacgacg ccatgaagat ggccaatgac gacctgcaga tgcgctccga ctggagcctg
     1681 ccgctctgca ccggcgagga gcggctgaag gacgaggcgg gcgtccaggc ccacccgacg
     1741 cagaaacccg aagccctgct ttgccgggtg atcctggctt ccacccggcc cggcgacgtg
     1801 atcctcgacc cgttcttcgg gacgggcacg acgggcgcgg cggccaagcg tctggggcgc
     1861 cactacatcg gcatcgagcg ggaagaggcc tacgccaggc tcgccaaggc ccgcatcgcc
     1921 aaggtgatcc cggccacggc cgcggagatg gtggtcaccg gctccaagcg gtcagagccg
     1981 cgcatcccct tcggccagat cgtcgaggcg ggcctgctgc gcgccggcga cgtgctctac
     2041 gacgacaagg gccgccatgc cgccagcgtt cgcgccgacg gcagcctggt ggtgggcgac
     2101 ctctccggct cgatccacaa ggtgggcgcc atggtccagt cccagcccgc ctgcaacggc
     2161 tggacctact ggcacttcaa gacggacaag ggcctggccc ccatcgacgt gcttagggcg
     2221 aaggtccgcc agcagctggc cgcgtagggt ctgggcctag cgcgagctca gcacgaactc
     2281 gttgccctcg gggtccttga agatcgcgaa ggttccccag ggctgtttct ccggcggacc
     2341 cttgaactcg acgccgcgct cgctgagctg gcggtgggtc gcctcgacgt cgtcgcaggc
     2401 gaaggagccg ttgaagaagg tgccgacgcg gtcctcgtga ccctccgggg tgaacaggac
     2461 caagcccgtc tggctgccgg cgatggccag ctcgatccag cgctgggcgc ccatgggctg
     2521 atcggtggtc acccgaaacc ccatcttctc ggtccagaac ttcagttgca gctcctgatc
     2581 gcggcagggc aggccggcga acttcaggtg ggtgatcatg gcgctctccg tcggttgtcg
     2641 cccccatctt tgccgcacgg gagacgggcc agacaatcgg tccatcaatt gctatagcaa
     2701 cgatcatgac tcagaagatc gtcctcgacc gctacgtcct cgatgtcctg atgcgcgacc
     2761 tagtcggcca cgaccatacg ccctcggcct tcctggtgta cctctggctc tggggaaaga
     2821 ccgacggcgg caagcggcgg ttcgcggcca gcctttccag catcgccctg gaaaccggct
     2881 tgtcgaaatc ctcggtgcag aacgcggtgc gccagctcag gcagcgccgc aaactcatcg
     2941 ccgtcaccca cgacggtccg accgccccgc cgatctacga ggtgctgacg ccctgggtac
     3001 ggatcccgag ctagggacct ggagcccgcc ttgccgcgtt ctagaccgca cagctgtaac
     3061 aagaggagta ccggccatgg tcgcgacggc gcacgcttcg cgagtgatcc ccgccgaacc
     3121 cgcggaggtt tgggagacgc tcacatcccg ggaaggcatg aaggccttca tgatgggcgc
     3181 ggatgtggag acggactggc gggtcggtgg ctcgatcgcc atgcgcggcg agttcaacgg
     3241 caagccctat gaggacaagg gcgaggtgcg ctccttcgag ccccggcggc ggctcagcta
     3301 cagccacacc agctccgccg cgcccgctca gacccatgtg gtcaccatcg agctcaggcc
     3361 ccgcagcaaa gggaccgagg tcaccgtgac ccaggctccg gcgaagcgcg ccgacgcggc
     3421 cgcggatgcc aagaacaggg cgcagtacga aaagacctgg gccgccatac tggagaagct
     3481 cgaggacgcc gtcgcgctct aaagcaggtt ggaaagcccg gcgcgcgcgg ccttcaggaa
     3541 gacgctgggg agcgcatcga gcccgcgcct gggcgcccag agaacgtcgg ccgcgtcgcc
     3601 ctcggcgcgc agcagttgca ggg
//
LOCUS       DATAJL010000324         1931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44313,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000324 DATAJL010000000
VERSION     DATAJL010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44313"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1931
                     /locus_tag="VHN39_06360"
     CDS             <1..>1931
                     /locus_tag="VHN39_06360"
                     /inference="COORDINATES: protein motif:HMM:NF025010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX2815995.1"
                     /translation="FAKSWVATLLFGLLIISFAVFGIGNRDLFHAKISNAVITAGPRT
                     VSMGEYKREFDGYKAQVEQQVGQPITPELAAANGLDRRVLEGVATREAFAAMLTKIGV
                     RPADKLIVSEIQKIPAFFDQVTGRFDKVSYQRRLADNNLTVAAFEGRMRDQLTEQEAS
                     TGLVAGLKAPRAYAAMAAIYTLESRDAAYFAIEPTSVPQPPAPTDDQLAQLMKENAAQ
                     LTRPEFRQLSVVRFSPSLVAANAPIDAAELQKRFNFRKDTLSTPETRTVIQIPAKDAA
                     TAVRIAQALAKGGDPAAAAKAAGVEAITYANKPKTAIPDPKVAAAAFATPTGQVATVK
                     GDLGIAVVKVLAVAPGRAVTLEEVRPALEAEIRKDQASEKVYALTQAYDDAHQGGANL
                     AAAAAKAGVPVTPLGPLTQNGRDLTGQPVPGLSQKLMQTAWTLPAGGESEVEDAGNGE
                     FFAVRVEKVIPPAIPPFAEIKPILARAWTQRELVKAMQAKADALAARVKKGESLEAVA
                     ASAGSSVTPVPGIDRQSIQQHTELSQDMLGKLFTSRTGDVFTAQNSHFGFVVGKLLAV
                     HTGDETTVARAAEQIRPQMSAGFYREIAESAHVAARERMKVVIDTNRAREAIGLEPID
                     PKAPVKVAGKAPGKPALAK"
BASE COUNT          343 a          703 c          638 g          247 t
ORIGIN      
        1 gattcgcgaa atcctgggtc gccaccctcc tgttcggcct cctcatcatc agctttgcgg
       61 tgttcgggat cggaaaccgc gatctcttcc acgcgaagat cagcaatgcg gtgatcaccg
      121 caggcccgcg gaccgtgagc atgggcgaat acaagcgcga gttcgacggc tacaaggccc
      181 aggtcgagca gcaggtcggc cagccgatca ccccggaact ggccgccgcc aacggcctcg
      241 accgccgcgt gttggagggc gtcgccaccc gcgaggcctt cgccgccatg ttgaccaaga
      301 tcggcgtccg tccggccgac aagctgatcg tctcggagat ccagaagatc ccggccttct
      361 tcgaccaggt caccgggcgc ttcgacaagg tctcctatca acgtcgtctg gcggacaaca
      421 acctgacggt cgcggccttc gaaggccgga tgcgtgacca gctcaccgag caggaagcca
      481 gcaccggcct tgtggcgggc ctcaaggccc cgcgcgccta cgcggcgatg gcggcgatct
      541 acacgcttga gagccgcgac gcggcctatt tcgccatcga gcccaccagc gtcccgcagc
      601 cgccggcgcc gaccgacgac caactcgccc agttgatgaa ggaaaacgcc gcgcaactga
      661 cccggccgga gttccgccag ttgagcgttg tgcggttctc gccgtccctg gtggcggcca
      721 acgcgcccat cgatgcggcg gagctgcaga agcgtttcaa cttccgcaag gacaccctgt
      781 cgacgccgga gacccgcacc gtcattcaga tcccggccaa ggacgccgcg accgccgtcc
      841 gcatcgccca ggctctggcc aagggcggcg accccgccgc ggcggcaaag gcggccggcg
      901 tcgaggcgat cacctacgcc aacaagccaa agaccgcgat ccccgacccg aaggtggccg
      961 cggccgcctt tgcgacgccg accggccagg tggccacggt gaagggcgac ctcgggattg
     1021 ccgtcgtgaa ggtgctggcg gtcgcccccg gccgcgcggt gacgctggag gaggttcgcc
     1081 cggcgctcga agccgagatc cgcaaggacc aggcctccga gaaagtctac gccctgaccc
     1141 aggcctatga tgacgcccac cagggcggcg ccaacctggc ggccgccgcc gccaaggccg
     1201 gcgtgccggt gacgcccctg ggcccgctca cccagaacgg acgcgacctg acgggccaac
     1261 cggtccccgg cctgagccag aagctgatgc agaccgcctg gacgctgccc gcgggcggcg
     1321 agagcgaggt cgaggacgcc ggcaacggcg agttcttcgc cgtgcgcgtg gaaaaggtga
     1381 tcccgccggc catcccgccc ttcgccgaga tcaagccgat cctggcgcgg gcctggaccc
     1441 agcgcgagct ggtcaaggcg atgcaggcca aggccgacgc gctcgcggcc cgcgtcaaga
     1501 agggcgagag tctcgaggcg gtcgcggcct ccgccggatc cagcgtcacg ccggtccccg
     1561 gcatcgaccg ccagtcgatc cagcagcaca ccgagctgtc gcaggacatg ctgggaaagc
     1621 tgttcacctc gcggaccggc gacgtgttca ccgcccagaa cagtcacttc ggcttcgtgg
     1681 tcggcaagct tttggcggtg cacaccggcg acgaaaccac ggtggcgcgg gcggccgaac
     1741 agatccgccc gcagatgagc gccggcttct atcgcgagat cgccgagtcc gcccacgtcg
     1801 cggcccgcga gcggatgaag gtcgtgatcg acaccaaccg cgcccgcgaa gccatcggcc
     1861 tggaaccgat cgacccgaag gcgcccgtga aggtcgcggg caaggcgccc ggcaagcccg
     1921 ccctcgcgaa a
//
LOCUS       DATAJL010000325         1772 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_80114,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000325 DATAJL010000000
VERSION     DATAJL010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80114"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            345..953
                     /locus_tag="VHN39_06365"
     CDS             345..953
                     /locus_tag="VHN39_06365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017405992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxychromene-2-carboxylate isomerase"
                     /protein_id="HEX2815996.1"
                     /translation="MIEVFFDCSSPWTYLAFANLRRLAAELAVEITWRPILVGGIFNT
                     VNPSVYAQRADPVPARARYMAKDLADWARHAGLHIKFPPSVFPVNSVKAMRGCIALEP
                     QGKLVDFAAAAFEAYWRDDLDISQDEILAEVCARTGVDPAGVFEAIARPEIKDQLRLN
                     TEEVIARGGFGSPTIFVGGDDMYFGNDRMPLIRDAVLRRRLA"
     gene            1268..>1772
                     /locus_tag="VHN39_06370"
     CDS             1268..>1772
                     /locus_tag="VHN39_06370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2815997.1"
                     /translation="MADSAVPAADLLPPRFADWFAQRGWSPRAHQLAMIERAQAGRDA
                     LLIAPTGGGKTLAGFLPSLIALSERPPSNTPRGLHTLYISTLKALAVDVERNLNTPIL
                     QMGLPIVAESRTGDTGISRRQRQRVKPPEILLTTPEQLALLCAWEGARLYFESLECVI
                     LDEIHTLH"
BASE COUNT          294 a          631 c          552 g          295 t
ORIGIN      
        1 cgcgccgatc tcgtcgcgca cctcggccag cttcttggcg ctccggccgg ccatcgccca
       61 agccacctgc ccgccgatcc cgtagcgctg cgccagatat tccgcgacga gccggcctgt
      121 gtagccggtg gcgccataga cgatgatgtc gaattcggcg gcggggttca tgggaagcct
      181 ctcctggtcg ggctcttaat tcacctggcg cggacaaatg gcggaccatg cctcgcgcaa
      241 gctccatatc atcctgacgc ggcgtcgcgc ctatccttca acgcccgcct tgaccatgat
      301 tggcgccaac gggccggatc aagcccggtg gaaggcacgg cgatatgatc gaggtcttct
      361 tcgactgttc gagcccctgg acctacctgg cgttcgcgaa cctgcgccgg ctcgccgccg
      421 agctcgcggt agagatcacg tggcggccga tcctggtcgg cgggatcttc aataccgtca
      481 atcccagcgt ctacgcccag cgcgccgacc cggtgcccgc cagggcccgc tacatggcca
      541 aggacctcgc cgactgggcg cggcacgcgg gcctgcacat caagtttccg cccagcgtct
      601 tcccggtgaa cagcgtcaag gccatgcgcg gctgcatcgc gctggagccg cagggcaagc
      661 tcgtggactt cgccgcggcg gccttcgagg cctactggcg cgacgacctc gacatctcgc
      721 aggacgagat cctggcggag gtttgcgccc ggaccggcgt cgatccggcg ggggttttcg
      781 aggccatcgc gcgcccggag atcaaggatc agcttcgcct gaacaccgaa gaggtcatcg
      841 cccgcggcgg cttcggctcg cccaccatct tcgtcggcgg cgatgacatg tacttcggca
      901 acgaccggat gccgctaatc cgcgacgcag tgctgcgccg gcgtttagcc tagagcggct
      961 cgtcgtgacc cagtttgaag aaccaaggct ccggcgatag gaccgaccca tggaaacatg
     1021 ccccttccgg gttggacaga tcgttcacta ccgccctgac ctcaggacgc gtggcctgac
     1081 ggccaacgac gggccgaccg aaacgcctcc gcctgggacc gccgttcgca tcgccttgat
     1141 agaaaatgac gcctatctgg tctgcgaggg ctaccagcat cccggcggcg gcatgcactg
     1201 gtcggccttc agcgctgatt agggtagcca ccctcgaaac ataacaggaa catgctatag
     1261 gctttcgatg gctgacagcg cggtccctgc cgccgatctc ctgccgcccc ggttcgccga
     1321 ctggttcgcc cagcggggct ggagtccgcg cgcccaccag ctggcgatga tcgagcgggc
     1381 ccaggctggt cgcgacgccc tgctgatcgc gcccaccggc ggcggcaaga cgctggcggg
     1441 ctttctgccc agcctgatcg cgctttccga acggccaccg tccaacaccc cgcgcggctt
     1501 gcataccctc tacatctcga cgctcaaggc gctggcggtg gacgtggagc gcaatctcaa
     1561 cacccccatc ctgcagatgg gcctgcccat cgtcgcggag agccgcaccg gcgacaccgg
     1621 catttcgcgg cgccaacgcc agcgggtgaa gccgccggag atcctgctca ccacgccgga
     1681 acagctggcc ctactctgcg cctgggaagg cgcgaggctc tatttcgaga gcctggagtg
     1741 cgtgatcctc gacgagatcc acaccctgca tg
//
LOCUS       DATAJL010000326         1927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92705,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000326 DATAJL010000000
VERSION     DATAJL010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92705"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="VHN39_06375"
     CDS             <1..262
                     /locus_tag="VHN39_06375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2815998.1"
                     /translation="AGAPNLEAGGRFASNITPHKDGIGDWSAQDIADFLKSGTDKCFN
                     EPTGMKDVIASTSKLADADLSGIAAYIHALPAIPGAPKHKTC"
     gene            272..>1927
                     /locus_tag="VHN39_06380"
     CDS             272..>1927
                     /locus_tag="VHN39_06380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2815999.1"
                     /translation="MADIAAPAALSKTEAASLRTVVAASSLGATFEWYDFFVFGSLTQ
                     VISKTFFSGLNETAGYIAALALFGVGFAFRPIGALAFGQIGDRVGRKGAFLITVVLMG
                     GATVAIGLLPSYATAGVAAPILLLAMRIVQGFALGGEYGGAAIYVAEHAPADARGRST
                     SWVQTAAAFGLFAALLVIFLTRLSLGKAFGPAAFDAWGWRIPFLFSAGLLAVSIFMRM
                     RLEESPTFAALKAEGGMSAAPYAEAFGQWKHLKLVLLALVAVMFAQGAVWYTAFFYAQ
                     TFMEKFLKVEPATINGLMMVVVAVSAPFYVFFGWLSDRWGRKPVMLFGMTLMLAAYFP
                     GFHLLTQTLNPALAEATAASPATVIADPADCALQFDPVGKAAFTSSCDIAKSALANAG
                     VSYVNQPGQPGQLAMVRVGMATIPSLDARGLPKDVAKAIKTSVETKIKEGLARANYPA
                     KADPKRMNLAGAFGVMLIFVIAATALFGPIAAFLVELFPTKIRYTALSLPYHIGTGWV
                     GGFVPVTAFAIVTATGNIYSGLWYPVIFTALSVATLPFWLPETR"
BASE COUNT          273 a          693 c          627 g          334 t
ORIGIN      
        1 cgccggcgcg ccgaacctcg aggccggcgg ccggttcgcc agcaacatca ccccgcacaa
       61 ggacggcatc ggcgactgga gcgcgcagga catcgccgat ttcctgaagt cgggcaccga
      121 caagtgcttc aacgagccca cggggatgaa ggatgtgatc gcgtccacca gcaagctcgc
      181 cgacgccgac ctctccggga tcgcggccta catccacgcc ctgcctgcca tccccggcgc
      241 ccccaagcac aagacctgct aggacaacgt catggcggac atcgccgcgc ccgccgccct
      301 gtcgaagacc gaagccgcgt ccctgcgcac ggtggtcgcc gcgtcgtcgc tgggcgcaac
      361 ctttgagtgg tacgacttct tcgtcttcgg cagcctgacc caggtcatct ccaagacctt
      421 cttctccggg ctgaacgaga cggccggcta tatcgccgcg ctggcgctgt tcggcgtggg
      481 cttcgcgttt cggccgatcg gagcgctggc cttcggacag atcggcgacc gggtgggccg
      541 caagggcgcc ttcctgatca ccgtggtgct gatgggcggg gcgacggtcg ccatcggcct
      601 cctgcccagc tatgcgacgg ccggcgtcgc cgcgccgatc ctgctgctcg ccatgcgcat
      661 cgtgcagggt ttcgcgctgg gcggcgaata tggcggcgcc gcgatctatg tggccgagca
      721 tgcgccggcc gacgcgcggg gccgctccac cagctgggtg cagacggccg cggccttcgg
      781 actcttcgcg gcgctgctgg tgatcttcct gaccaggctt tcgctcggca aggcgttcgg
      841 gccggcagcc ttcgacgcct ggggttggcg catccccttc ctgttctcgg cgggcctgct
      901 ggcggtctcg atcttcatgc gcatgcggct tgaggagagc cccacattcg ccgccctgaa
      961 ggccgaaggc ggcatgtcgg ccgcgcccta cgccgaggcc ttcggccagt ggaagcacct
     1021 caagctggtg ctgctggccc tggtggccgt gatgttcgcc cagggcgccg tctggtacac
     1081 ggccttcttc tacgcccaga ccttcatgga gaagttcctg aaggtggagc cggcgaccat
     1141 caacggcctg atgatggtgg tcgtggcggt gagcgctccg ttctacgtct tcttcggctg
     1201 gctctccgac aggtgggggc gcaagcccgt catgctgttc ggcatgaccc ttatgctggc
     1261 ggcctatttc ccgggcttcc acctgctcac ccagacgctg aacccggcgc tcgccgaggc
     1321 caccgccgcc tcgccggcca cggtgatcgc cgacccggcc gactgcgccc tgcagttcga
     1381 cccggtgggc aaggccgcgt tcacctcgtc ctgcgacatc gccaagagcg cactggccaa
     1441 cgccggggtg tcctacgtca accagcccgg ccagccgggc cagctggcca tggtgcgggt
     1501 cggcatggcg acgatcccct cgctcgacgc ccgcggcctg cccaaggacg tggccaaggc
     1561 gatcaagacc agcgtcgaga cgaagatcaa ggagggcctg gcccgcgcca actatcccgc
     1621 caaggccgac cccaagcgga tgaacctggc cggcgccttc ggggtgatgc tgatcttcgt
     1681 gatcgccgcg accgcccttt tcggcccgat cgcggccttc ctggtggagc tgttcccgac
     1741 caagatccgc tacacggcgc tttcgctgcc ctatcacatc ggcaccggct gggtcggcgg
     1801 cttcgtgccg gtcaccgcct tcgccatcgt gaccgccacc ggcaacatct attcggggct
     1861 gtggtacccg gtgatcttca cggcgctgag cgtggccacc ctgccgttct ggttgccgga
     1921 aacacgg
//
LOCUS       DATAJL010000327         1619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_31526,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000327 DATAJL010000000
VERSION     DATAJL010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31526"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..923
                     /locus_tag="VHN39_06385"
     CDS             240..923
                     /locus_tag="VHN39_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519232.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2816000.1"
                     /translation="MAQRKTLLIVDDDADLRGAVAEQLQAEDFATIEAATAGEGVRLA
                     QTEKPDLILLDVDLPDFDGREACRRMRASGVSTPVIMLTAAVEDEDTVQGLDAGANDY
                     VTKPYKFAVLLARIRVQLRDYEHSEGAVFRLGAYEFRPAAKMLIDPQAKKIRLTEKET
                     NILKYLYRAGEKPVSREELLAEVWGYNAGVTTHTLETHVYRLRQKIESDPANAKLLLT
                     EAGGYRLAP"
     gene            complement(953..>1619)
                     /locus_tag="VHN39_06390"
     CDS             complement(953..>1619)
                     /locus_tag="VHN39_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEX2816001.1"
                     /translation="AFVEMGLPHLAISGQKGWHGVAIASRLPLEDAAPLQVCREGHAR
                     CVGATVAGVEIHNFYIPAGGDNPDREANAKFDHKLDFYEKLTAELSKRDPRAPLAIVG
                     DLNVAPGENDVWNHKYMSKIVSHTPVEVEAMDALHKSLGFIDLTREAYPEPQKLASWW
                     SYRAQDFRQSNRGLRLDHILVTPGLRDAAFRTGSASSRIHDDVREWERPSDHAPVSAD
                     LAL"
BASE COUNT          267 a          550 c          548 g          254 t
ORIGIN      
        1 ggccggtaga gcacgcgccg gatcggccag acgccagccg gggaggcgag gtcgccctcg
       61 cgcttctcgg cggccggctt caccccgccc ttgcccagcg cgcagcgcac gcgacgcgtc
      121 cccaggtcga gctgaccgtc ggcggtggcg gtgaagatca agcgcgtcgt ccccaaatac
      181 ccttgcccgc caaatcttct ttgcagggcg gcggcaatac ggtgcatgtt cggacgacca
      241 tggcgcaacg caagaccctc ctcatcgtcg atgacgacgc ggaccttcgc ggggccgtcg
      301 ccgaacagct gcaggccgag gatttcgcca ccatagaggc ggccaccgcc ggcgagggcg
      361 tgcgcctggc ccagaccgag aagcccgacc tcatcctgct cgacgtcgac ctgccggatt
      421 tcgacggccg cgaggcctgc cgccggatgc gcgccagcgg ggtctcgacg ccggtgatca
      481 tgcttacagc ggcggtggag gacgaggaca ccgttcaggg gctagacgcc ggcgccaacg
      541 actacgtcac caagccctac aagttcgccg ttctcttggc ccgcatccgg gtgcaattgc
      601 gcgactacga gcattccgag ggcgcggtct tccgccttgg cgcctatgag ttccgcccgg
      661 ccgccaagat gctgatcgac ccgcaggcca agaagatccg cctgacggag aaggaaacca
      721 acatcctgaa gtacctctac cgcgcgggcg agaagccggt gtcgcgcgag gagctgctgg
      781 ccgaggtctg gggctacaac gccggcgtca ccacccacac cctggaaacc cacgtctacc
      841 gcctgcgcca gaagatcgag agcgatccgg cgaacgccaa gctgctgctg accgaggccg
      901 gaggctaccg gctggcgccc tagccttaga tgctccccgt agggggctgg atttacagcg
      961 ccagatccgc gctgaccggg gcgtggtcgc tgggccgttc ccactcgcgc acatcgtcgt
     1021 ggatgcggct ggaggccgag cctgtgcgga acgccgcgtc acgcagaccc ggcgtcacca
     1081 gaatgtggtc gaggcggagg ccccggttcg actggcggaa gtcctgggcg cggtagctcc
     1141 accacgacgc cagcttctgc ggttccggat aggcctcccg cgtgaggtcg atgaagccca
     1201 gggatttgtg cagggcgtcc atcgcctcga cctccaccgg cgtgtggctg acgatcttcg
     1261 acatatattt gtggttccac acgtcgttct cgccgggcgc cacattgagg tcgccgacga
     1321 tggccagcgg cgccctgggg tcgcgcttgg aaagctcggc cgtcagcttc tcgtagaagt
     1381 cgagcttgtg gtcgaacttg gcgttcgcct cgcggtcggg gttgtcgccg ccggccggga
     1441 tgtagaagtt gtggatctcg acgccggcca cggtggcgcc gacgcagcgg gcgtggccct
     1501 cgcggcagac ctgcaagggt gcagcgtcct ccagcggcag gcgggatgcg atggcgacgc
     1561 cgtgccagcc cttctgtccg ctgatcgcca gatgcggaag gcccatctcg acaaaagca
//
LOCUS       DATAJL010000328         2550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5720,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000328 DATAJL010000000
VERSION     DATAJL010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5720"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VHN39_06395"
     CDS             complement(<1..552)
                     /locus_tag="VHN39_06395"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816002.1"
                     /translation="MSPGPARIPPSAALRRRVMIASAIGTTVEWYDFLLYGTAAALVF
                     GKVFFPKSDPLTGTMFAFATYGVGFMARPIGGIIFGHFGDRIGRKRLLIISLILMGTA
                     TFLIGLLPTFNQVGVLAPTLLVILRLVQGFGLGGKWGGAILMSAEFGEARHRGLWTGF
                     TQAGGGLGNFLATGVLAVMAATLS"
     gene            complement(549..1856)
                     /locus_tag="VHN39_06400"
     CDS             complement(549..1856)
                     /locus_tag="VHN39_06400"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816003.1"
                     /translation="MTTASAATPATLRKVVLASMIGTTIEWYDFFLYGTAAALVFNKL
                     FFPKSDPLTGTMLAFATYALGFAARPLGGLVFGHFGDRIGRKQLLMLSLMLMGGSTVL
                     IGLLPTFSEIGIFAPLALVALRLVQGFAVGGEWGGAVLMVTEYGDAKRRGFWAGWPQA
                     GVPAGNLLASAVLAIMAATQSNADFLAWGWRVPFLLSAVLVAIGYWVRVSLAESPLFQ
                     QALADTGAPQAPVLDAIRERPGGLAIGAGLRVAENISFYLITTYAISYMTEIVHLTRT
                     LALNAMLAGAAVEVVMIPIFASLSDRIGRRPVYFIGAAGMALWGFAFFRMIDTGLTPN
                     VLIAVIVGLVLHGAMYGPQAAFIAELFPTRMRYSGASLAYQATSIFAGSLAPIIALAL
                     YGHYKSWVPIAIYLAVAGAISAFSALKARETKGLTFAQIDAQA"
     gene            complement(1946..>2550)
                     /locus_tag="VHN39_06405"
     CDS             complement(1946..>2550)
                     /locus_tag="VHN39_06405"
                     /inference="COORDINATES: protein motif:HMM:NF023432.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3501 family protein"
                     /protein_id="HEX2816004.1"
                     /translation="ERPMPATLRQITPADLIPDADYAKERRERRLALLPVKRLRRVAL
                     GPVCTLIFESYDTMLFQVQEMLLTEKGGAEQVPDELAAYNPLIPQGSELVATVMFEID
                     DEARREATLARLGGVEDTFFIQVGSDRAMGVPEGDVERTRDDGKTSSVHFLRFPLTPD
                     QVARFRDPATQMMVGCGHEGYSHLAGLTPATRAELAKDFA"
BASE COUNT          436 a          846 c          921 g          347 t
ORIGIN      
        1 gctcagcgtc gcggccatca ccgccagcac gccggtggcc aggaagttgc cgagaccgcc
       61 gcccgcctgg gtgaagccgg tccacaggcc ccgatgccta gcttcgccga actcggcgct
      121 catcaggatc gccccgcccc acttgccgcc cagcccgaag ccctgcacca gccgcaggat
      181 caccagcagt gtcggcgcga gcacgcccac ctggttgaag gtggggagca ggccgatcag
      241 gaaggtcgcc gtccccatca ggatcaggct gatgatcagc aggcgcttgc gcccgatgcg
      301 gtctccgaag tggccgaaga tgatcccgcc gatcggccgg gccatgaacc cgaccccata
      361 ggtggcgaag gcgaacatgg tcccggtcag gggatcggac ttcgggaaga acaccttgcc
      421 gaacaccagc gccgcggcgg tgccgtagag caggaagtcg taccactcga cggtggtgcc
      481 gatggcgctg gcgatcatca cgcggcggcg cagcgccgcc gacggcggga tacgcgcggg
      541 gcccgggctc acgcctgggc gtcgatctga gcgaaggtca ggcccttggt ctcgcgggcc
      601 ttgagcgcgg agaaggcgct gatcgcgccg gccacggcca ggtagatcgc gatcgggacc
      661 caggacttgt agtggccgta gagcgccagc gcgatgatcg gcgccaggga ccctgcgaag
      721 atcgaggtcg cctgataggc cagagaggcg cccgaatagc gcatccgcgt cgggaacagc
      781 tcggcgatga acgctgcctg agggccgtac atcgccccgt gcagcaccag gccgacgatc
      841 accgcgatca gcacattggg cgtcagcccc gtgtcgatca tccggaagaa ggcgaagccc
      901 cagagcgcca tcccggccgc gccgatgaag tagaccggcc tgcgcccgat tcggtcggac
      961 agggaggcga agatcgggat catcaccacc tcgaccgccg cgccggccag catggcgttg
     1021 agcgccagcg tccgggtcag gtggacgatc tcggtcatgt agctgatcgc gtaggtggtg
     1081 atcaggtaga aggagatgtt ctcggcgacc ctgaggccag cgccgatggc gaggccgccg
     1141 ggccgctcac ggatcgcgtc gagcaccggc gcctggggcg cgccggtgtc ggccagggcc
     1201 tgttggaaga gcgggctttc ggcgaggctg acccgcaccc aatagccgat ggcgaccagc
     1261 acggcggaga gcaggaacgg cacgcgccag ccccaggcca ggaagtcggc gttcgactgg
     1321 gtcgcggcca tgatggccag gacggcggac gccagcaggt tgccggccgg cacgccggcc
     1381 tgcggccagc ccgcccagaa gccgcggcgc ttggcgtcgc cgtattcggt gaccatcagg
     1441 accgcgccgc cccactcgcc gcccaccgcg aagccctgca ccagacgcag cgccaccagg
     1501 gccagcggcg cgaagatccc gatctcggag aaggtgggca gcagaccgat cagcaccgtc
     1561 gagccgccca tcagcatcag gctcagcatc aggagctgct tgcgcccgat ccggtcgccg
     1621 aagtggccga acaccagtcc gcccagcggc cgcgccgcga accccagagc ataggtggcg
     1681 aaggccagca tggtcccggt caaggggtcc gacttcggga agaacagctt gttgaacacc
     1741 agcgccgcgg cggtgccata gaggaagaag tcgtaccact cgatggtggt gccgatcatg
     1801 ctggcgagca cgaccttgcg cagggtggcg ggcgtcgcgg cggatgcggt ggtcaagtct
     1861 taagccctcc cggcgcggcc cgcctctgac ggcggactcg ttggagggca gatgagcgcg
     1921 aacgctcctc gcttacaagt cgcgcttagg cgaagtcctt ggcgagttcg gcgcgggtgg
     1981 ctggcgtcag gccggccagg tggctgtagc cctcatggcc gcagccgacc atcatctggg
     2041 tcgcagggtc gcggaagcgg gcgacctggt cgggggtcag cgggaagcgc aggaagtgga
     2101 ccgaggaggt cttgccgtcg tcgcgggtac gctcgacgtc gccttcgggg acgcccatgg
     2161 cgcggtcgga cccaacctgg atgaagaagg tgtcctcgac gccgcccagc cgggccagcg
     2221 tcgcctcgcg gcgggcctca tcgtcgatct cgaacatcac ggtggccacc agttccgagc
     2281 cctgggggat cagcgggttg taagccgcca gttcgtcggg gacctgttcg gcgccgccct
     2341 tctcggtcag cagcatctcc tgcacctgga agagcatggt gtcgtagctc tcgaagatca
     2401 gggtgcagac cgggcccagc gcgacacggc gcaggcgctt gaccggcagc agggccaggc
     2461 gccgctcgcg gcgctctttc gcgtagtcgg cgtcggggat caggtcggcg ggggtgatct
     2521 ggcgaagggt ggcgggcatg ggtctctctc
//
LOCUS       DATAJL010000329         2847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_80184,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000329 DATAJL010000000
VERSION     DATAJL010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2847
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80184"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /gene="mraY"
                     /locus_tag="VHN39_06410"
     CDS             <1..219
                     /gene="mraY"
                     /locus_tag="VHN39_06410"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518013.1"
                     /note="First step of the lipid cycle reactions in the
                     biosynthesis of the cell wall peptidoglycan; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEX2816005.1"
                     /translation="VLGIVGGLFVLETVSVIIQVLWFKRTGKRVFLMAPVHHHFEKLG
                     WSESTVVIRFWIVSIMLALLGLATLKLR"
     gene            239..1648
                     /gene="murD"
                     /locus_tag="VHN39_06415"
     CDS             239..1648
                     /gene="murD"
                     /locus_tag="VHN39_06415"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEX2816006.1"
                     /translation="MIPVRGFEGKTVAVFGLARTGLAAARALVAGGARVALWDEKPAS
                     REAAAAEGFPLVDLATADWSQFAALMLSPGVPFTHPAPHWTVEKARTAGVEIVGDIEL
                     FARTVNAAPDHKRPKIVAITGTNGKSTTTALIGHVCAQAGRDVRIGGNIGVSVLDLED
                     MHGGAVYVLEMSSYQLDLTSSLHADVTVILNLSPDHLERHGSMEGYVAAKRRILMNQG
                     KGDTAVIGVDDMWGQQICTEITAANRRTIVPISANKAMGRGIYVLNGLLYDATGERAQ
                     EVADLNRARSLPGRHNWQNAAAAYAAAKGLGIDAQEAAEHLLTFPGLAHRMETVATLG
                     RVRFVNDSKATNADAARQALSSYPKSFWIAGGQAKTDGIEPLEDLFPRVAKAYLIGEA
                     GPAFAQTLEGKVPVAPAGTLEVAVAQAYADAAATGQDAIVLLSPACASFDQYADFEER
                     GEAFRSAVQRLAHAAKGAA"
     gene            1645..2838
                     /gene="ftsW"
                     /locus_tag="VHN39_06420"
     CDS             1645..2838
                     /gene="ftsW"
                     /locus_tag="VHN39_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEX2816007.1"
                     /translation="MTTATPHSHPQAHHAFARSDRSTVGVWWWTVDHWILGAVLMLIA
                     IGMVIAFAASPAAAARMNIGDPFHFAVRQCVFAAGAFLILIVVSMLDVKTVRRSAFLI
                     WLIAIAIMVALPLLGHNAKGATRWVEFGGFSLQPSEFMKPALIILVAWMFSEGQKGNG
                     VPGVSIAFALYFISIALLLIQPDIGQTVLITVAFGAVFWMAGVPISWVMGLGVTALAG
                     LSSTYFLFPHVASRVDRFLSPDKADTHQVDAAAVAQAAGGFFGRGPGEGILKRAIPDA
                     HTDFALSVGAEEFGLIFLFLVVSLFCFVVVRGLYRSMKLSDPFEQVAAAGLFVLVGQQ
                     AIINIAVNLDLIPTKGMTLPFISYGGSSMLAMGLTLGMALALTRRRPGAYTVGEGLAK
                     AGAFT"
BASE COUNT          408 a         1035 c          920 g          484 t
ORIGIN      
        1 gttctgggca tcgtcggcgg cctgttcgtt ctggaaacgg tgtcggtgat catccaggtc
       61 ctgtggttca agcggaccgg caagcgggtc ttcctcatgg ctccggtcca ccaccatttc
      121 gagaagctcg gctggtcgga atcgaccgtc gtgatccgct tctggatcgt ctcgatcatg
      181 ctggccctgc tggggctggc caccctgaaa ctgcggtagg ggagggcatc agaacgccat
      241 gatcccggtc cgcggcttcg agggaaagac ggtcgccgtg ttcggcctgg cccgcacggg
      301 tctggccgcg gcgcgggcgc tcgtggccgg cggcgcccgg gtggcgctct gggacgaaaa
      361 gcccgcgtcc cgcgaggccg ccgccgccga gggctttccg ctcgtcgacc tcgccaccgc
      421 cgactggagc cagttcgccg ccctgatgct gtcgccgggc gtgccgttca cccatcccgc
      481 gccgcactgg accgtggaga aggcccgcac cgccggcgtc gagatcgtcg gcgacatcga
      541 gctcttcgcc cggaccgtga acgccgcgcc ggaccacaag cgcccgaaga tcgtcgccat
      601 caccggcacc aacggcaagt cgacaacgac ggccctgatc ggccacgtct gcgcccaggc
      661 cggccgcgac gtgcgcatcg gcggcaacat cggggtcagc gttctcgacc ttgaggacat
      721 gcatggcggc gctgtctacg tcctggagat gagctcctac cagctcgacc tgacctccag
      781 cctgcacgcc gacgtcacgg tgatcctcaa cctgtcgccc gaccatctgg agcgtcacgg
      841 gtcgatggag ggctatgtcg ccgccaagcg ccggatcctg atgaaccagg gcaagggcga
      901 caccgcggtg atcggcgtcg acgacatgtg gggccagcag atctgcaccg agatcaccgc
      961 cgcaaaccgc cgcaccatcg taccgatctc agccaacaag gccatgggcc gtgggatcta
     1021 tgtgctgaac ggcctgctct atgacgccac cggcgagcgc gcccaggaag tcgccgacct
     1081 caaccgcgcc cgctcgctgc ccggccgcca caactggcag aacgccgcgg ccgcctacgc
     1141 cgccgccaag ggcctgggca tcgacgccca ggaggccgcc gagcacctgc tgaccttccc
     1201 gggcctggcg caccgcatgg agaccgtggc gacgctgggc cgcgtgcggt tcgtcaatga
     1261 ctcgaaggcc accaacgccg atgccgcgcg tcaggccctg tcgagctatc ccaagtcctt
     1321 ctggatcgcc ggcggccagg ccaagaccga tggcatcgaa ccgctggaag acctctttcc
     1381 ccgtgtcgcc aaggcctacc ttatcggcga ggcgggcccg gccttcgccc agacgctgga
     1441 gggcaaggtg cccgtggcgc cggccgggac cctggaagtc gccgtcgccc aggcctatgc
     1501 cgacgctgcg gccaccggcc aggacgccat cgtgctcctg tcgccggcct gcgcgtcctt
     1561 cgaccagtac gccgacttcg aggagcgcgg cgaggccttc cggtccgccg tccaacggtt
     1621 ggcgcacgcc gcgaaaggcg ccgcatgacc acggccacgc cgcattccca tccgcaggcg
     1681 caccacgcct tcgcgcgctc cgaccgctca acggtgggcg tgtggtggtg gaccgtggat
     1741 cactggatcc tcggcgccgt cctgatgctg atcgccatcg gcatggtcat cgccttcgcc
     1801 gccagccccg cggcggcggc gcggatgaac attggcgacc cgttccactt cgcggtgcgc
     1861 cagtgcgtct ttgcggccgg cgccttcctg atcctgatcg tcgtctcgat gctcgacgtg
     1921 aagaccgtcc gacgaagcgc cttcctgatc tggctgatcg ccatcgccat catggtcgcg
     1981 ctgccgctgc tgggccacaa cgccaagggc gccacgcggt gggtggagtt cggcggcttt
     2041 tccctgcagc cgtcggagtt catgaagccg gccctgatca tcttggtcgc ctggatgttt
     2101 tccgaaggcc agaagggcaa tggcgtgccc ggcgtctcca tcgccttcgc gctctacttc
     2161 atctccatcg cactcctgct gatccagccg gacatcggcc agacggtgct gatcacggtc
     2221 gcctttgggg ccgttttctg gatggcgggc gtgccgatct cctgggtgat ggggctgggc
     2281 gtgaccgcgc tcgcgggcct ttcgtcgacc tatttcctgt tcccgcacgt ggccagccgc
     2341 gtcgatcggt tcctctcccc cgacaaggcc gacacccatc aggtggacgc cgccgccgtg
     2401 gcccaggccg ccggcgggtt cttcgggcgc ggccccggcg aaggcatcct caagcgcgcc
     2461 atccccgacg cccacaccga cttcgcgctc tccgtggggg ccgaggagtt cggcctgatc
     2521 ttcctgttcc tggttgtctc gctgttctgc ttcgttgtgg tgcgcgggct ctaccgctcg
     2581 atgaagctga gcgatccctt cgagcaggtc gccgccgccg gcctcttcgt gctggtgggc
     2641 cagcaggcga tcatcaacat cgccgtcaac ctcgacctga tccccaccaa gggcatgacg
     2701 ctgccgttca tcagctacgg cggctcgtcc atgctggcca tggggctgac cctgggcatg
     2761 gcgctggcgc tcacccgccg tcggcccggc gcctataccg tcggcgaggg cctcgccaag
     2821 gccggcgcgt tcacttaagg ccgacac
//
LOCUS       DATAJL010000330         2439 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92726,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000330 DATAJL010000000
VERSION     DATAJL010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2439)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2439)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2439
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92726"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..168
                     /locus_tag="VHN39_06425"
     CDS             <1..168
                     /locus_tag="VHN39_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP binding domain-containing protein"
                     /protein_id="HEX2816008.1"
                     /translation="VLVIITEWDQFRALDLDRIKLLMKAPVLVDLRNIYKPDDMRARG
                     FAYTSVGRATV"
     gene            complement(470..1822)
                     /gene="glmM"
                     /locus_tag="VHN39_06430"
     CDS             complement(470..1822)
                     /gene="glmM"
                     /locus_tag="VHN39_06430"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEX2816009.1"
                     /translation="MSKRAYFGTDGIRGEANRFPMTAEVALRVGMAAGKLFMSKDDRR
                     HLVVIGKDTRLSGYMIEPALVAGFTSVGMDVRLFGPLPTPGVAMMTRSLRADLGVMIS
                     ASHNAFSDNGIKLFGPDGYKLSDERELEIEALMDQGLQENLASPTSLGRVQRIDDCQA
                     RYVEIAKATFPRRLNLTGMRIVIDCANGAAYKVAPEALYELGAEVIKVGVEPNGFNIN
                     DEVGSTAPAAMLKLVKEYRADIGIALDGDADRLVICDENGQVVDGDQIMALIAGHWAQ
                     KGRLAGGGVVATVMSNLGLERFLQARKLKLERTAVGDRAVMVRMREGGFNLGGEQSGH
                     IILSDFSTTGDGLLAALQVLAVLKESDKPMSSLARQFEPVPQKLENVRFGGGKPLENA
                     EVMGAIADAEQRLNGSGRLLVRASGTEPLIRIMAEGDDEKLVSQVVKEIAGAVKKAAA
                     "
     gene            1938..>2439
                     /locus_tag="VHN39_06435"
     CDS             1938..>2439
                     /locus_tag="VHN39_06435"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515492.1"
                     /note="Catalyzes the first step in hexosamine metabolism,
                     converting fructose-6P into glucosamine-6P using glutamine
                     as a nitrogen source; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate
                     aminotransferase"
                     /protein_id="HEX2816010.1"
                     /translation="MCGIIGIVGVSSVQERLIDSLKRLEYRGYDSAGVAGVVDGHVER
                     RRAAGKIKALEEVLAADPLNATVGIGHTRWATHGGPTTKNAHPQTAGRVTLVHNGIIE
                     NYAELREMLKAKGRTFESETDTEVIAALIDFELSTGKTPVVALKAALDQLTGAYAIGV
                     LIDGEDE"
BASE COUNT          423 a          808 c          794 g          414 t
ORIGIN      
        1 gtgctggtga tcatcaccga gtgggatcag ttccgggcgc tggacctgga ccgcatcaag
       61 cttctgatga aagcccctgt gctggtcgat ctgcgcaata tctacaagcc cgacgacatg
      121 cgcgcccgcg gcttcgccta caccagcgtg ggccgcgcga cggtctgagt cgccagatgc
      181 cgcagggccc ctaaagcccg ggggtgctgc tcaggatggt ctggccgagc caaagggctc
      241 cggcccagaa agctagtccg agaagagcga cgaaggccag gcaggcgaag gagcttacgc
      301 cccggcctac gggccgcgcc aaacctccat atgcgaggtg tcgagccatt gtttctccca
      361 agcatttttg gccgtcctgc ctcggtcgag cgaagcagca ttacgagatt gtcataatgt
      421 ttgacgcttg ggtagggttg ctgtgaagca aggttaaggg cgtgcgccct caggcagcgg
      481 ccttcttcac cgcgccggcg atttccttga ccacctggga gaccagcttc tcgtcgtcgc
      541 cctcggccat gatgcggatg agcggctcgg tgccggaggc gcggaccagc aggcggccgg
      601 agccgttgag ccgctgctcg gcgtcggcga tggcgcccat cacctcggcg ttctccagcg
      661 gcttgccgcc gccaaagcgg acgttttcca gcttctgcgg cacgggttcg aactggcggg
      721 ccagcgaact catcggcttg tcgctctcct tcagcaccgc cagcacctgc agggcggcca
      781 ggaggccgtc gccggtggtg gagaagtcgg agaggatgat gtggccggac tgctcgccac
      841 ccaggttgaa gccgccttcc cgcatacgga ccatcaccgc gcggtcgccc accgcggtgc
      901 gttccagctt cagtttgcgg gcctgcagga agcgttcgag gccaaggttg gacatcaccg
      961 tggccacgac cccgccgccc gccaggcggc ccttctgggc ccagtgcccg gcgatcagcg
     1021 ccatgatctg gtcgccgtcg acgacctggc cgttctcgtc gcagatcacc agccggtcgg
     1081 cgtcgccgtc cagcgcgatg ccgatgtcgg cgcggtattc cttgaccagc ttcagcatgg
     1141 cggccggcgc cgttgagccg acctcgtcgt tgatgttgaa gccgttgggc tcgacgccaa
     1201 ccttgatgac ctccgcgccc agttcataga gggcttcggg ggccaccttg taggccgcgc
     1261 cattggcgca atcgatgacg atgcgcatgc cggtcaggtt tagccggcgc gggaaggtcg
     1321 ccttggcgat ctccacatag cgggcctggc agtcgtcgat ccgctgcacg cggcccagcg
     1381 acgtgggact ggccaggttt tcctgcaggc cctggtccat cagggcttcg atctccagtt
     1441 cccgctcgtc ggagagcttg tagccgtccg ggccgaacag tttgattcca ttgtctgaaa
     1501 aggcgttgtg cgaggctgag atcatcaccc caaggtcggc gcgcaggctg cgggtcatca
     1561 tcgccacgcc aggcgtcggc aacggcccga aaaggcgcac gtccatgccc acggacgtga
     1621 agcccgccac cagcgccggc tcgatcatgt agcccgacag acgggtgtct ttgccgatca
     1681 ccaccaggtg gcggcggtcg tccttggaca tgaacagctt gcccgccgcc atgccgaccc
     1741 tgagggccac ctctgcggtc atggggaagc ggttagcctc gccgcgaatg ccatcagtgc
     1801 cgaagtaggc gcgcttgctc atgcgaaacg atccgaaacc cagatttagt cgacgtgcgt
     1861 ttggcggatg gtaaagccgc actctcgcgg cctcgatacc cccgcgacgg aactatcaca
     1921 aaaggacgcc ataccccatg tgcggcataa tcggcatcgt cggcgtctcc tccgtacagg
     1981 aacgtctgat cgacagcctg aagcgtctgg aataccgcgg ctatgactcg gccggcgtgg
     2041 cgggcgtggt ggacggccac gtagagcgcc gccgcgcggc gggcaagatc aaggccctgg
     2101 aagaggttct cgccgccgat cccctgaacg ccacggtggg gatcggccac acccgctggg
     2161 cgactcacgg cggccccacg accaagaacg cccacccgca gaccgccggg cgcgtcaccc
     2221 tggtgcacaa cgggatcatc gagaactacg ccgaactgcg cgagatgctg aaggccaagg
     2281 gccggacctt tgagagcgag accgacaccg aggtcatcgc cgccctgatc gatttcgagc
     2341 tgtcgacggg caagaccccg gtcgtggccc tgaaggccgc gctggaccaa ctcaccggcg
     2401 cctacgcgat cggcgtgctg atcgatggcg aggacgaac
//
LOCUS       DATAJL010000331         4092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5770,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000331 DATAJL010000000
VERSION     DATAJL010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4092
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5770"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VHN39_06440"
     CDS             complement(<1..383)
                     /locus_tag="VHN39_06440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816011.1"
                     /translation="MTQQEDILALVDSAYQAAVDPSLWPDALARAGELFGGHQTVVIG
                     SETRRTTPSERLNTLGDPLAVRTYLKGFEAINPIQAAMDRGRAAGFSPTVSTDETYLE
                     RRELERSDFYNGYFSRFDMHNVMMMT"
     gene            complement(477..1478)
                     /locus_tag="VHN39_06445"
     CDS             complement(477..1478)
                     /locus_tag="VHN39_06445"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003960 - NADPH:quinone reductase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase family protein"
                     /protein_id="HEX2816012.1"
                     /translation="MKALLSKVVGGPDALVLEDVPSPVAKPGHAVISVKAIGVNFPDV
                     LMIEDKYQFKPERPFAPGGELSGVVKAVGEGVTNVKPGDRVLANTGWGAMAEEVLLPA
                     SRLWKIPDAMPHDVAAAFILTYGTSYHALKDRGHLKPGETLLVLGAAGGVGLSAVELG
                     KAMGARVIAACSTQEKVDLAIEHGADAGVVYGRGPFDKDGQRALGALFKDACGPNGAD
                     VIYDAVGGDYAEPALRSIAWEGRYLVIGFAAGDIPRIPLNLALLKGCDIVGVFWGTWT
                     QKNPALFAASIDDLLALYASGKIRPHVSERFPLSKGADAIAHLGSRQAMGKVVITVD"
     gene            complement(1579..2403)
                     /locus_tag="VHN39_06450"
     CDS             complement(1579..2403)
                     /locus_tag="VHN39_06450"
                     /inference="COORDINATES: protein motif:HMM:NF024946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEX2816013.1"
                     /translation="MNLAAPLLIAAALLIAHPVQAQTAAPEAPADAPSDGLRDFCAQR
                     PGKATPPCIIDAGHLQIETGLADAVFQHSNGVHEDTYALGATELRLGVSRRVELEAAW
                     APVIIDQTRGQPHVSGVGDASLAVLAALSDPDKMGVAVSAEAFVTVPTATHGLGAGGW
                     TGGMRLPMSIPLSDGFSLGLTPEVDVLRNAAAGGTHAAWVGVASLGRSFGPVTLGAEL
                     WGQVEDDPAGTIRRASADLTGALMIGKTLQLDAGANFGLNRNTPDAEVYVGISHRF"
     gene            2512..3678
                     /gene="rlmN"
                     /locus_tag="VHN39_06455"
     CDS             2512..3678
                     /gene="rlmN"
                     /locus_tag="VHN39_06455"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEX2816014.1"
                     /translation="MGVTLDLSRAPTTARPPAKPNLSGLTRAELAAALVAAEVVRPEK
                     ARMRATQLWRWIHHYGVTDFAAMSDVAKEMRSGLAEAFTLARPEIVERQVSRDGTRKW
                     LIRTAPGIEVECVYIPDVGRAGALCVSSQVGCTLNCTFCHTGTQALVRNLTAAEIVAQ
                     VQVARDDLAEWPSPKEDRRLSNIVFMGMGEPLYNLDAVAAAIDIISDGEGIAISRRRI
                     TVSTSGVVPELTPLGERTQAMLAISLHATNDALREQLVPLNKKYPLAELMAGIRAYPG
                     ASNARRVTFEYVMLKGINDTPAEAKALVQLLKGVPAKINLIPFNPWPGSPYECSDWGT
                     IEAFAAILNRGGYASPIRTPRGRDILAACGQLKSESEKVRASVRRKAAAEEPAT"
     gene            3745..>4092
                     /locus_tag="VHN39_06460"
     CDS             3745..>4092
                     /locus_tag="VHN39_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HEX2816015.1"
                     /translation="MTTPLQSPEIQAFATGFPVTLLHAGVTVTILFAAAALYIMLTPH
                     KEITLIRDGNTAAAVSLGGVLIGLAIPLAVSLKASTTLIELALWGVAITLVQLLIFRL
                     VDLILRGLPRRIQE"
BASE COUNT          644 a         1429 c         1396 g          623 t
ORIGIN      
        1 gtcatcatca tcacattgtg catgtcgaaa cggctgaaat agccgttgta gaagtccgac
       61 cgctcaagtt cgcgccgctc caggtaggtc tcatcggtgc tgaccgtcgg cgaaaaaccg
      121 gccgcgcgcc cccggtccat agccgcctgg ataggattga tcgcctcgaa gcccttcaga
      181 taggtccgca cggccagggg gtcgcccagg gtgttcagcc gctccgaagg cgtcgtgcgt
      241 cgcgtctcag acccaatgac cacggtctgg tggccgccga acagttcgcc ggcccgagcc
      301 agggcgtcgg gccacaggct cgggtccacc gccgcctgat aggcggagtc gacaagcgca
      361 agaatgtctt cctgctgcgt cacgtacgcg cctcccgcgc cacattaggc cgtggaacgc
      421 ggttcggcca agcgttgacc ccttggaggc gaggccagcg cccaggaaaa cggcgcctag
      481 tcgacggtga tcacgacctt gcccatggct tggcggctgc ccaggtgggc gatggcgtcg
      541 gcgcccttgc tgagcgggaa gcgctcggag acgtgtggcc tgatcttgcc ggacgcatag
      601 agcgccagga gatcgtcgat gctggcggcg aagagcgccg ggttcttctg cgtccaggtg
      661 ccccagaaca caccgacgat gtcacagccc ttgagcaacg ccaggttcag cgggatgcgc
      721 gggatatccc cggccgcgaa cccgatgacc agatagcggc cttcccaggc gatggagcgt
      781 agcgcgggct ccgcatagtc gccgccgacg gcgtcataga tcacgtcggc gccattgggc
      841 ccgcaggcgt ccttgaagag cgcgcccagc gcccgctggc cgtccttgtc gaaggggcct
      901 cggccataga ccacgccggc gtcggcgccg tgctcgatgg ccaggtcgac cttctcctgg
      961 gtggagcagg cggcgatcac gcgggcgccc atggccttgc cgagctcgac ggccgacaag
     1021 cccacgccgc ccgccgcgcc caacaccagc agggtttcgc cgggcttcag gtgaccccgg
     1081 tctttcagcg cgtgatagga ggtgccgtag gtcaggatga aggccgcggc cacgtcgtgc
     1141 ggcatggcgt cggggatttt ccacagacgc gaggcaggca acagcacctc ctcggccatg
     1201 gccccccagc cggtgttggc cagcacccgg tcgccgggct tcacattggt cacgccttcg
     1261 cccaccgcct tcacgacgcc ggagagctcg ccgcccgggg cgaagggccg ctcaggtttg
     1321 aactggtatt tgtcctcgat catcagcacg tcggggaaat tgaccccgat ggccttcacc
     1381 gagatcaccg cgtggccggg cttggctacg ggcgacggca catcctccag caccagggcg
     1441 tccggtccgc caacgacctt gctcaacagc gccttcatgt ccgtctcccg ccggtgctct
     1501 tcgaagttgg cgggacgcta gcccaccggc tccggaggcg gaaggcggaa acccaacgga
     1561 cgtttgaaga cggggtggtc agaagcggtg ggagattccc acatagacct cggcgtccgg
     1621 ggtgttgcgg ttgaggccga agttcgcgcc ggcgtcgagc tgcagggtct tgccgatcat
     1681 gagggcgccg gtcaggtcgg cgctggcgcg gcggatcgtt ccagccgggt cgtcctcgac
     1741 ctgcccccag agctcggcgc ccagggtcac tggcccgaag ctgcggccga ggctggccac
     1801 tccgacccag gccgcgtgag tcccgccggc ggcggcattg cgcagcacat cgacttccgg
     1861 tgtcaggccg agcgaaaagc catcgctgag cgggatggac atcggcaggc gcatgccgcc
     1921 ggtccagccg ccggcgccca gcccgtgcgt ggcggtgggc acggtgacga aggcctcggc
     1981 cgaaaccgcg acgcccatct tgtctgggtc ggacagcgcg gcgaggacgg ccaggctggc
     2041 gtcgcccacg ccgctcacgt gcggttggcc gcgggtctgg tcgatgatca ccggcgccca
     2101 ggcggcctcc agctcgacgc ggcggctcac gcccaaccga agctccgtcg cgcccagggc
     2161 ataggtgtcc tcatggaccc cgttgctgtg ctggaagact gcgtcggcca gaccggtctc
     2221 gatctgaaga tgcccggcgt cgatgatgca cggtggcgtc gccttgccgg ggcgctgggc
     2281 gcagaagtcg cgcaggccat cggagggcgc gtcggccggc gcctccggcg cggcggtctg
     2341 cgcctggacg gggtgcgcga tgagcagggc ggcggcgatg agaagagggg cggcgaggtt
     2401 catggggctc agctatgcct ccgctgcaaa ggaagggtaa acggcgcccc gatttggctg
     2461 aacggccgca ctcgcctata tcggggcctc tcagacagga agcttctccc cttgggcgtg
     2521 accctcgacc tttcgcgtgc gccgacgacg gcgcggccgc cggccaagcc caacctttcg
     2581 gggctgacgc gggctgagct ggcggctgcc ctggtcgccg ccgaggtcgt gcggccggag
     2641 aaggcccgga tgcgggccac ccagctctgg cgctggatcc accactatgg cgtcaccgac
     2701 ttcgcggcca tgagcgacgt ggccaaggag atgcgcagcg gtctggccga ggccttcacc
     2761 ctcgcccggc ccgagatcgt cgagcggcag gtctccaggg acggcacgcg taagtggctg
     2821 atccgcaccg cgcccggcat cgaggtcgag tgcgtctaca tccccgatgt gggccgggcc
     2881 ggcgcgcttt gcgtctccag ccaggtgggc tgcacgctga actgcacctt ctgccacacc
     2941 ggcacccagg cgctggtgcg caacctgacg gccgccgaga tcgtggccca ggtgcaggtg
     3001 gcgcgcgacg atctggcgga atggccaagc cccaaggagg atcgccggct ctccaacatc
     3061 gtcttcatgg gcatgggcga gccgctctac aatctggacg ccgtggccgc ggccatcgac
     3121 atcatctccg acggcgaggg catcgccatc tcgcggcggc ggatcaccgt ctccacctcc
     3181 ggcgtcgtgc ccgagctgac cccgctgggc gagcggaccc aggccatgct ggcgatctcg
     3241 ctgcacgcca ccaacgacgc gctccgcgag caactcgtgc cgctgaacaa gaagtacccc
     3301 ctggccgaac tgatggccgg catccgcgcc tatcccggcg cctcgaacgc gcggcgcgtg
     3361 accttcgagt acgtgatgct gaaggggatc aacgacaccc cggccgaagc caaggcgctc
     3421 gtccagctgc tgaagggcgt gccggccaag atcaacctga tcccgttcaa cccgtggccc
     3481 ggcagcccct atgagtgctc cgactggggg accatcgagg ccttcgccgc gatcctcaac
     3541 cgcggcggct acgcatcccc gatccgcacg ccccgaggcc gcgacatcct cgccgcctgc
     3601 ggccagctca agagtgagag cgagaaggtc cgcgccagcg ttcggcgcaa ggccgcggcc
     3661 gaagagcccg cgacttaagg cgctttccga aagcctgcgt ctgcgtgcta tcgagggcgg
     3721 ccgtccacgg gagccgcccc acccatgacc acgcccctcc agtcgccgga aatccaggcc
     3781 ttcgccacag gcttcccggt caccctgctg catgcgggcg tgacggtgac catcctgttc
     3841 gcggcggcgg cgctctacat catgctgacg ccgcacaagg agatcaccct gatccgcgac
     3901 ggcaataccg cggccgcggt atcgctgggc ggggtgctga tcggcctggc cataccgctg
     3961 gccgtctcgc tgaaggcctc caccaccctg atcgagctgg cgctctgggg ggtggcgatc
     4021 acgctggttc agctgctgat cttccggctg gtcgacctca tcctgcgggg cctgccccgg
     4081 cgcatccaag ag
//
LOCUS       DATAJL010000332         3912 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_118431,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000332 DATAJL010000000
VERSION     DATAJL010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3912
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118431"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2611
                     /locus_tag="VHN39_06465"
     CDS             <1..2611
                     /locus_tag="VHN39_06465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816016.1"
                     /translation="EDSLRFHIVALRRALGEGRFIANVASQGYCFVAQVRQPGDETRG
                     DAPPAPGRPQPARARPLFGRAAVLRSLSEQLFRYRFVNLVGPGGVGKTSVALTLGRDL
                     ASGFDGDVCVFDVGSVFNPEHLGGGLAAALGITAPAGGAAPEVVTFLQRRRMLLVLDG
                     CESALDAAAALAERLFRDAPQIHLLATSREALRAEGEHVHRLFPLDVPASGEGQTAEA
                     ALQFGAVQLFVDRAAAGGSGFVLTDPDAALVSDLCGKLDGLPLAIELAAGRANALGVA
                     EVARQLETQFALMWPGRRTAVARHQTLSAALGWSHWQLSDHEQIAFRRLGVFAGPFTL
                     AMAADLLADGQTTAAEATALLASLVSKSLVQFNPAAPRGAYRLLDTTRSYALDRLTQA
                     NEASAVGERHARLMCRMLAATPGDAAAADGLRAQDLLGDVGVALQWSLSPGGDSEVAV
                     SLAVASAPVWMGAGLMVECRFWMGRVLGAVGPPALDPLRQLAIQGTLASAENFTDGFT
                     EGSFQSWRTAQAMAVALGDVGQQELSLVVLWAHRIRYPDYPEARGLCEEAAALAATTP
                     GPGTRAMADWMAGITGHHSGRLAEGRIRLERAMASDPPEARAAMRGQLGYDRRIASMS
                     VLSNLHWLQGRPDTSMRVAAASVAEARGSTFPVPLCEALNWQALNGHLRGDDPGEIAR
                     LLDESITLARPHFIESYLGMSLAQSGLNAVARNGAVDSGLVAQGLDLLARSFYGVFHP
                     LFATETARARVEAGSRLSRDEVDALLRWDEVQGEHWSSAEVRRNLAVVLLSQGERERA
                     AQFLSEADAIAERQGALAWGLRVAMSAHAAAAEAGPRREARDRVAVLLGRFTEGEDVA
                     DARAARRLLATAP"
     gene            complement(2629..3045)
                     /locus_tag="VHN39_06470"
     CDS             complement(2629..3045)
                     /locus_tag="VHN39_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017245584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ohr family peroxiredoxin"
                     /protein_id="HEX2816017.1"
                     /translation="MTALYVATALSTGTGREGHVETSDGKVSLDLDFPKELGGSGAGT
                     NPEQLVAMGYAACFSSALGVTARRRKATLSAVEVTCEVSLLQADGGYALSFEIIARLA
                     GVAADEAQSLVAEAHTVCPYSRAFSHGVATQARAAV"
     gene            3308..3679
                     /locus_tag="VHN39_06475"
     CDS             3308..3679
                     /locus_tag="VHN39_06475"
                     /inference="COORDINATES: protein motif:HMM:NF026182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HEX2816018.1"
                     /translation="MPLYRIAVEAGSLSDPAMAALAAEITDFHCQLTGLAPSYVKVLF
                     DSYPRGAGFVGGGAGPPVTLTVLIRAGRATDYKQQMLRSLWAILQRATKAGDAQMLVA
                     IEEAPASQAMEMGLIMPDLPS"
     gene            complement(3698..>3912)
                     /locus_tag="VHN39_06480"
     CDS             complement(3698..>3912)
                     /locus_tag="VHN39_06480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816019.1"
                     /translation="SLQGGRRRAEFDPGSMAEPPVVRVLRLASTCERGAALGSDTSRS
                     RGGRRPYESFIFLLESLTRPDGQAGG"
BASE COUNT          547 a         1347 c         1405 g          613 t
ORIGIN      
        1 ggaggatagc ctaaggttcc atatcgtcgc cctgcgccgc gcactgggtg agggccgctt
       61 catcgccaat gtcgccagcc agggctattg cttcgtggcc caggtccgcc agcccggcga
      121 cgagaccagg ggcgacgccc cacctgcgcc tggtcggccg cagcctgcgc gggcgcgtcc
      181 gctgtttggc cgggccgcgg tgctccgatc gctctccgag caactgttcc ggtatcgctt
      241 cgtgaacctg gtcggcccag gcggcgtcgg caagaccagc gtggcgctca cactggggcg
      301 cgacctcgcc tccggattcg acggcgacgt ctgcgtcttc gacgtaggca gtgtcttcaa
      361 cccagagcac ctggggggcg gcctggccgc ggcgctgggg atcaccgcgc cggcgggcgg
      421 cgccgcgcct gaggtcgtga ccttcctgca gcggcgacgg atgctgttgg tcctggacgg
      481 ctgcgagtcg gccctagacg ccgccgcagc tctggccgaa cggcttttcc gcgacgcgcc
      541 gcagatccac ctcctggcca ccagccgcga ggcgctgcgc gccgagggcg agcacgtcca
      601 tcgcctgttt ccgctcgatg ttcctgcctc aggtgagggt cagacggcag aggcggcgtt
      661 gcaattcggc gccgtccaac tcttcgtgga ccgggccgcc gccggcggga gtggctttgt
      721 cctcaccgac ccggacgcgg cgctggtcag tgacctctgc gggaagctcg acggcctgcc
      781 cttggcgatc gagctggccg cggggcgcgc caacgccctc ggcgtggcgg aagtggcccg
      841 gcagctagag actcaattcg ccctgatgtg gcctgggcgg cggacggccg tcgcgcgaca
      901 ccagacgctc agcgcggccc tggggtggag ccattggcag ctgtccgacc atgagcagat
      961 cgccttccgg cgtctcggcg tcttcgccgg cccattcacc ctcgccatgg ccgccgatct
     1021 tctcgcggac ggccagacga cggcggccga ggccaccgcc ttgttggcca gcctggtctc
     1081 gaaatcgctc gttcagttca acccggccgc cccgcgaggc gcctaccgac tgctggacac
     1141 aacccgcagc tatgcgctcg accgcctgac ccaggcgaat gaggccagcg ccgtgggcga
     1201 gcgccatgcc cggttgatgt gccgcatgct ggctgccacg cctggggacg ccgcagcggc
     1261 cgatggcctt cgggcgcagg acctgctcgg ggatgtcggg gtcgctcttc agtggagcct
     1321 gtcgccgggc ggcgattccg aagtggccgt cagcctcgcc gtcgcctccg cgccggtgtg
     1381 gatgggcgcc ggactgatgg tggagtgccg cttctggatg ggccgggtgt tgggcgcggt
     1441 cggcccaccc gcactggacc cccttcgcca actggcgatc cagggcaccc tcgccagcgc
     1501 tgaaaacttc accgatggat tcaccgaggg aagctttcaa agctggcgca ccgcccaggc
     1561 catggccgtc gccctgggcg atgtcgggca gcaggaactg tccctggtcg ttctgtgggc
     1621 gcatcggatt cgctaccccg actaccccga ggcgcgcggg ctctgcgagg aagcggcggc
     1681 attggcggcc acgacgccgg gccccggcac acgggctatg gcggattgga tggcggggat
     1741 caccggacac catagcgggc ggctcgcaga aggacggatc cgcctggaac gcgctatggc
     1801 cagcgatccg ccggaagccc gcgcggcgat gcgcgggcag ttgggatacg accggcgcat
     1861 cgcttccatg tcggtgctga gcaacctgca ttggctgcaa gggcggcccg acacgtccat
     1921 gcgggtcgcg gcggcctccg tcgccgaggc gcgcggctcc acctttccgg tgccattgtg
     1981 cgaggcgctc aattggcagg ccctcaacgg tcacctgcgg ggggacgacc ccggcgagat
     2041 cgcgcgactg ctcgacgaga gcatcacact tgctcggccg catttcatcg agagctacct
     2101 gggtatgagc ctggcccagt cgggcctgaa cgccgtggcg cgcaatggtg cggtcgacag
     2161 cgggctggtg gcccaggggc tcgatctgct ggcgcggtcg ttctacggcg tcttccatcc
     2221 gctgttcgca acggagaccg cccgcgcgcg ggtcgaagcg ggttcgcgcc tcagccgcga
     2281 cgaggtggac gccctcctgc ggtgggacga ggtccagggt gagcattggt cttctgcgga
     2341 ggtccggcga aacctggcgg tggtgctgct gagccaaggc gaacgcgaac gcgcggcgca
     2401 gttcctttcg gaggccgacg ccatcgcaga gcggcaaggg gcgctggctt gggggctgcg
     2461 ggtggcgatg agcgcccatg cggcggctgc ggaggcaggc ccccggcgcg aggcccgaga
     2521 ccgcgtggca gtcttgctcg gccgcttcac cgagggcgag gatgtcgccg acgcccgggc
     2581 tgcccgccgc ctcctggcga ccgcgccgtg acggcggcgg atcggacgtc agacggcggc
     2641 gcgggcttga gtcgccaccc cgtggctgaa tgcccgtgaa taggggcaca ccgtatgggc
     2701 ctcggccacc aggctctgcg cctcgtcggc cgccacgccc gccagacgcg caatgatctc
     2761 aaacgacagg gcgtagccgc cgtcggcctg aagcaggctg acctcacagg tcacctccac
     2821 ggcggagagc gtcgccttcc gccgtcgggc ggtgacgccg agcgcgctgg agaagcaggc
     2881 ggcgtagccc atggccacca gctgttccgg gttggtcccg gcgccggatc caccgagttc
     2941 cttggggaag tcgaggtcga ggctcacctt tccgtcagag gtttcgacat ggccttcgcg
     3001 tccggtcccg gtggagaggg cggtcgcgac atagagtgcg gtcattgggg gctcccatcc
     3061 ggcggacggc gagggtgggc ctagggcatc gccctggccg ctggcctcag cttggtcagc
     3121 ccggaagcct agccatgggc gccgtcggat tacttgtagg ggattgacgc gtgatccccg
     3181 ccgcgaagga ccggcgcatc gtttggctcg gcgcttacaa gggacggcat ggcgatccaa
     3241 gcgccgttcg cccaggtccg taaggtccgc gcccgactcc tttcctctgg acgcgaggca
     3301 aagtcccatg ccgctctacc ggatcgctgt tgaagccgga tcgctcagcg accccgccat
     3361 ggccgcgctc gccgcggaga tcacggactt ccactgccag ctgaccggcc tggcgccgtc
     3421 ctacgtgaaa gtgctgttcg acagctaccc gcgcggcgcc ggcttcgtgg gcggcggcgc
     3481 ggggccgccg gtgaccctga cggtgctgat ccgcgccgga cgggcgactg actataagca
     3541 gcagatgctg cggtcgcttt gggcgatcct gcagcgcgcg accaaggctg gggacgccca
     3601 gatgctcgtc gccatcgagg aagcgcccgc cagccaggcc atggaaatgg gtctgatcat
     3661 gcccgatctc cccagctagc cggtctgcgg gccgccgcta gccgccagcc tggccatcgg
     3721 gccgggtcag gctctccaga aggaagatga aggactcgta gggccggcgg cctccccttg
     3781 atctggaggt gtcgcttccg agcgccgcgc cgcgctcaca agtgcttgca agacgtaaca
     3841 cgcgcacgac gggaggctcg gccatgctgc cggggtcgaa ttcggcgcgc cgccgcccgc
     3901 cttggagtga ac
//
LOCUS       DATAJL010000333         2545 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_56925,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000333 DATAJL010000000
VERSION     DATAJL010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2545
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56925"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            90..1226
                     /locus_tag="VHN39_06485"
     CDS             90..1226
                     /locus_tag="VHN39_06485"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2816020.1"
                     /translation="MLGVLLTATACGTIPRPPLAGARLFDTPTKLDAFRFPADDPQAF
                     LNLYRTVAERRAQLHLDGMRVLALSGGGANGAYGAGILVGWTKAGDRPDFDLVTGVST
                     GALMAPLVFAGPAWDDRLSAAYHDPTVRGIARDPLTALFKPSLFSSTALKRLTDKYID
                     GDLLRAVSAEHDKGRTLFVATTDLDSQRTMIWDLGAVAGWAQEPGHAAEALKLFRTVL
                     LASSSIPGVFPPALIGLDSEPGRPAELHVDGGVSAAFFLIPESMAFWKPDQAMRPTAM
                     YVILSSKIQPNFEYTPGKAGPILLRSIDTLGRAQARMELIAASAFADRNGAPVFVAAL
                     PANQPGNPVDFSGANMGALFDLGQRRALSHRAFRPVAQAMEPDT"
     gene            complement(1377..2270)
                     /locus_tag="VHN39_06490"
     CDS             complement(1377..2270)
                     /locus_tag="VHN39_06490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX2816021.1"
                     /translation="MHYCKMFDWDDLKVFLAAARAGSFGAASQRLGVDTATVGRRVGR
                     LETSLKATLFIRSPSGLQLTATGTRLLESAADAELNMLAAARVTEPEVVAGAVRISAA
                     EGFGTAILAGALPALAERRPGLRIELAAHAGFLSPSRREVDMAVTLSPSEGQRLVVEP
                     LASYQLALYAAPEYLARHGPVESLDDLRRGRLVGYVDDLLYAGELRYLEEISPGLTPT
                     LASSSIQAQRAMITQGGGVGVLPAFLADRLVRVLPDVVQLERRFWLATHREVHATARV
                     RVVRAWLGEVVAQHAQKLRPF"
     gene            2328..>2545
                     /locus_tag="VHN39_06495"
     CDS             2328..>2545
                     /locus_tag="VHN39_06495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX2816022.1"
                     /translation="MRNITHFIDGASVAGTSGRFGDIFNPNTGEVQARVALATTAEVD
                     AAVASAVRAQQVWSLVNPQRRARVMFDF"
BASE COUNT          407 a          913 c          826 g          399 t
ORIGIN      
        1 ccgcaagact atgtcttgga cctgccatgg gccgaggaat ggcgttgacg agacgcgcta
       61 gaggtcaaac cgctgcagct gccctcgcga tgctgggcgt actccttacg gcgaccgcct
      121 gcggaacgat cccgcggccg cctctcgccg gcgcacggct gttcgacacg ccgaccaaac
      181 tcgacgcgtt ccggttcccc gccgacgacc cacaggcgtt cctcaacctc tatcgaaccg
      241 tggcggagcg tcgagcccaa ctgcatctcg atggcatgcg ggtgctggcc ttgtcaggag
      301 gcggcgccaa cggcgcttac ggcgcgggga tcctggtggg ctggacgaag gccggcgacc
      361 gtccggattt cgacctggtc acaggggtga gcactggggc gctcatggcg ccgttggtgt
      421 tcgcgggacc cgcttgggac gaccgtctca gcgccgccta ccacgacccg accgttcgcg
      481 gcatcgcccg cgacccgttg accgccttgt tcaagcccag cctgttcagc tccacggccc
      541 tgaagcggct cacggacaaa tatatcgatg gcgatctcct gcgcgcggtt agcgccgaac
      601 atgacaaggg gcgcaccctg ttcgtcgcga ccaccgacct ggactcgcag aggaccatga
      661 tctgggatct cggcgcggtc gccggatggg cgcaggaacc gggccacgct gccgaagccc
      721 tcaagctctt ccggacggtg ctgctggcgt cgtccagtat ccccggcgtc tttccgccgg
      781 ccctgatcgg actcgatagc gaacccggcc gtcccgccga gctgcatgtc gatggcgggg
      841 tcagcgccgc gttctttctg atccccgagt cgatggcctt ctggaagccg gaccaggcca
      901 tgcggcccac cgccatgtat gtgatcctca gcagcaagat tcagccgaac ttcgagtaca
      961 cgcccggcaa ggccggcccc atcctattgc gctcgatcga cacgctggga cgcgcccagg
     1021 cgcgcatgga gctcatcgcg gcctccgcct ttgcagatcg caacggagcg ccggtcttcg
     1081 tcgccgcctt gcctgcgaac cagcccggca atccggtcga cttcagcggc gcgaacatgg
     1141 gcgccctgtt cgatctcggc cagcgccgag ctctgtccca tcgcgccttc cggcccgtag
     1201 cccaggcgat ggagccggat acgtaagcgg cgcgacgact cgaatccgca ggtagacgac
     1261 cgatctcccc tgattcatcc aagccgccgt cgtgcccgat gcggcttccc gccggggcag
     1321 acgccgtggc cttgtcctcg gccggctgac catggcggac gacggcgcgc tctccgtcag
     1381 aatggcctga gcttttgggc gtgctgggcc accacctcgc ctagccaggc gcgaaccacc
     1441 cgcactcgcg ccgtcgcgtg gacctcgcga tgggtggcca gccagaaccg gcgctccaac
     1501 tggacaacgt cgggcaacac ccgcaccaag cggtccgcga ggaaggccgg gaggactccc
     1561 accccgccgc cctgggtgat catcgccctt tgcgcttgga tggacgaact ggcgagcgtg
     1621 ggcgtcagcc caggtgagat ctcctccaga tagcgaagct ctccggcgta gagcaggtcg
     1681 tccacatagc cgaccagccg cccgcggcgc aggtcgtcca gcgattcaac gggaccgtgt
     1741 cgggcaaggt attcaggcgc ggcgtagagt gccagctggt agctggcgag cggctcgacc
     1801 accaggcgct ggccctccga aggactgagg gtgacagcca tgtccacctc ccgccgcgac
     1861 ggggatagga aaccggcgtg ggcggccagc tcgatgcgca ggcccggccg ccgctcggcg
     1921 agcgcaggta gcgcgcccgc caggatcgcc gttccgaacc cttccgccgc gctgatccgg
     1981 acagcgcctg ccaccacctc gggctcggtg acccgcgcgg ccgccagcat gttgagttcg
     2041 gcgtcggctg ccgactccag caggcgggtg ccggtggctg ttagctgaag cccgcttggg
     2101 gaccggatga agagggtcgc cttgagcgag gtctccaggc ggccgacccg ccggccgacg
     2161 gtggccgtgt cgacgcccag ccgctggctg gccgcgccga aggagccggc ccgggccgca
     2221 gcgaggaaca ccttgagatc gtcccagtcg aacatcttgc aataatgcac atcagctact
     2281 gcaagaatgc aatggctgac gacggtcggg tctcctatcc ctgcggcatg cgcaacatca
     2341 cccacttcat cgacggcgcc tctgtcgccg gaacctcggg ccgcttcggc gacatcttca
     2401 atcccaacac cggcgaggtg caggcccgcg tggcgctcgc caccacggcc gaggtcgacg
     2461 ccgccgtggc ctccgcggtt cgcgcccagc aggtctggtc gctggtcaat ccacagcgcc
     2521 gcgcccgcgt catgttcgac ttcaa
//
LOCUS       DATAJL010000334         3011 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5778,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000334 DATAJL010000000
VERSION     DATAJL010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5778"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..231)
                     /locus_tag="VHN39_06500"
     CDS             complement(<1..231)
                     /locus_tag="VHN39_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816023.1"
                     /translation="MDVLQDAQHRHGVTGRVAGKFAGVEVADEGSGVARDQIVWVANH
                     AEDSVLFFDITFAAQVAELAEAMPLIKTRVAMT"
     gene            205..1236
                     /locus_tag="VHN39_06505"
     CDS             205..1236
                     /locus_tag="VHN39_06505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816024.1"
                     /translation="MLGVLEYIHDAPAFLKRLRALKQPVVLSYNIAGGRGPADRGSLG
                     WVNHFSQAQLLALLGDCGFTRVIGDEITPGQLLMGLQPDAPPKPERSVWILSYGNSGN
                     FGDRLGAQVLSSVLPPNARVRHIRHKPWDAPPEGRPDLLIVCAGGSLFGPLLTPDLLQ
                     LAERAERSIGVFGTQYRQTLDATMLGGLLDRLDTWWARYEEDALLYGAGRNNVRHLGD
                     MLIDAFPLAQWTVDGTLEVGSEVLGNAPLDRLIERIQSHRHVGSGRLHPLLCALTSAE
                     TVAYKEQYETDGVTPAGKFRSMLMDVFGMEKPQSRFWPVDRAAVGAYKAKVRAGLEEL
                     RRELATMLS"
     gene            1246..2892
                     /locus_tag="VHN39_06510"
     CDS             1246..2892
                     /locus_tag="VHN39_06510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012275117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEX2816025.1"
                     /translation="MQALMMDRALTLPSILEYAAQYHPNRQVVDRTVEGPIHRYGYAD
                     ALKRTKRMANALIAMGVRPGDRVATLAWSTHRHFELYFAVTGIGAILHTINPRLHADQ
                     IVWVANHAEDSVLFFDITFAAQVAELAEAMPLIKTRVAMTDRAHLPADAPADALVYEE
                     LIDANSPEFDWPELDERQASGLCYTSGTTGNPKGVLYSHRSTVLHAMALGLPDAFNFS
                     ARDVVMPCAQMYHANAWCTPYAAPLVGATLVLPGRALDGASIAELIEQEGVTFLLGVP
                     TIWVGVADHLDQTGGRLTSVKTIAVGGSAPTAALVSRIEDRLGGQVRQIWGMTETSPL
                     GVINTPLPEHAGEDAAATLQRKLKQGRGLWGVDMRIVGEAIDGKNGAELPRDGQSAGA
                     LQVRGPWVSSAYFKHDGAQVFTDDGWFDTGDIATLDADGYLRLTDRAKDVIKSGGEWI
                     STLDLEEAVCSHPAVAMAAAIGVPHPKWDERPLLLVTLRPGQTADPEDLKAHVAARVA
                     KWWTPDEVRIVDALPIGPTGKVLKRELRDQLATPPAITTT"
BASE COUNT          487 a         1004 c         1048 g          472 t
ORIGIN      
        1 ggtcatggcc acgcgcgtct tgatcagcgg catggcctcg gccagttcgg ccacctgcgc
       61 ggcgaaggtg atgtcgaaga acaggacgct gtcctcggcg tggttggcca cccagacgat
      121 ctggtcgcgc gcgacgcccg aaccctcgtc tgcgacttca acgccggcga atttcccggc
      181 gacacgccct gtgacgccgt gacggtgctg ggcgtcctgg agtacatcca tgacgcgccc
      241 gccttcctga agagattgcg cgcgctcaag cagccggtgg tcctcagcta caatatcgcc
      301 ggcggtcgcg gaccggccga ccggggcagt ctgggttggg tcaaccactt cagtcaggcg
      361 cagctcctgg ccctgcttgg tgactgcggc ttcacgcggg tcatcggcga tgagatcacc
      421 cccggccagc tgttgatggg gttgcagccc gacgcgccgc cgaagcccga gcggtctgtc
      481 tggatcctct cctacggcaa cagcggcaac ttcggcgacc gtctgggcgc gcaggtgctg
      541 agcagcgtgc tgccgcccaa cgcccgggtc cgccatattc gtcacaagcc ctgggatgcg
      601 ccgcctgagg gtcgcccgga cctgctgatc gtctgcgcgg gcggcagcct cttcggaccg
      661 ctgctcaccc cggacctgct gcagctcgcc gagcgcgcgg aacggtcgat cggcgtgttt
      721 ggcacccagt accggcagac cctcgatgcc accatgctgg gcggattgct cgatcggctc
      781 gacacctggt gggcgagata tgaggaggac gcgctgctgt acggcgccgg gcggaacaat
      841 gtgcgccacc tcggcgacat gctgatcgac gccttcccgc tggcccagtg gacggtcgac
      901 gggacgctgg aggtcggatc ggaggtcttg ggcaacgcgc ccctcgaccg attgatcgag
      961 cgcatccagt cgcaccgcca cgtcgggtcc ggtcggctgc acccgctgct ctgcgccctg
     1021 acgtcggccg aaaccgtcgc ttacaaagag cagtacgaga ccgacggtgt gacgcccgcg
     1081 ggcaagttcc gctcgatgct gatggacgtt ttcggcatgg agaagccgca gagccgcttc
     1141 tggccggtcg atcgcgcggc tgtcggcgcc tacaaggcca aggtgagggc tggcctcgaa
     1201 gagcttcgcc gggagctggc gacgatgttg tcctaggagc tgacaatgca ggccctgatg
     1261 atggaccggg cgctgacgct gccctcgatc ctggaatacg ccgcccagta ccatccgaac
     1321 cggcaggtcg tggaccgcac ggtggagggg ccgatccatc gctacggcta cgccgacgcc
     1381 ctgaaacgga ccaagcggat ggccaatgcg ctgatcgcca tgggtgtgag gccgggcgac
     1441 cgggtggcga cgctggcctg gtcgacgcac cggcatttcg agctctactt cgcggtcacc
     1501 gggatcgggg cgatcctgca caccatcaat ccgcgcctgc acgccgacca gatcgtctgg
     1561 gtggccaacc acgccgagga cagcgtcctg ttcttcgaca tcaccttcgc cgcgcaggtg
     1621 gccgaactgg ccgaggccat gccgctgatc aagacgcgcg tggccatgac cgaccgggcc
     1681 cacctgccgg cggatgcgcc ggctgacgct ctggtctacg aggagctgat cgacgccaac
     1741 tcgccggagt ttgactggcc ggagctagac gagcggcagg cctcggggct ctgctacacc
     1801 tccggcacca cgggcaatcc caagggggtg ctctattcgc accgttcgac ggtgctgcac
     1861 gccatggccc tgggcctgcc cgacgccttc aacttctcgg cccgcgatgt ggtgatgccg
     1921 tgcgcccaga tgtaccacgc caacgcctgg tgcacgccct atgcggcgcc gctggtgggc
     1981 gcgacgctcg tcctgcccgg acgcgccttg gatggcgcga gcatcgccga gctgatcgaa
     2041 caggaggggg tgaccttcct cctgggcgtg ccgaccatct gggtcggcgt cgccgatcac
     2101 ctggaccaga ccggcgggcg gctgacctcg gtgaagacca tcgcggtggg aggatcggcg
     2161 ccgacggcgg cgctggtcag ccgcatcgag gaccggctgg gcggccaggt gcggcagatc
     2221 tgggggatga ccgagaccag cccgctcggg gtcatcaaca cgccgctgcc cgaacacgcc
     2281 ggcgaggacg cggcggccac cctgcagcgc aagctgaagc agggccgggg cctctggggc
     2341 gtcgatatgc ggatcgtcgg cgaggccatc gatggtaaga atggcgcgga gctgccgcgc
     2401 gacggccaga gcgcaggcgc gctgcaggtg cgcggaccct gggtctcctc ggcctatttc
     2461 aagcatgatg gggcccaggt gttcaccgac gacggctggt tcgataccgg cgacatcgcc
     2521 accctcgacg cggacggcta tctgcgcctg accgaccggg cgaaggacgt gatcaagtcg
     2581 ggcggggagt ggatctcaac gctggatctg gaggaggcgg tctgctcgca tccggcggtc
     2641 gccatggccg ccgccatcgg cgtgccgcat cccaagtggg acgagcggcc gctgctgctg
     2701 gtgacgctcc ggcccggcca gacagctgac ccggaggacc tgaaggccca cgtcgccgcc
     2761 cgcgtcgcca agtggtggac gccggacgag gtgcggatcg tggacgccct gccgatcggg
     2821 cccaccggca aggtgctgaa gcgggaattg cgtgaccagc tcgccacacc gccggccatt
     2881 acgacaactt aagatgaatg gcgccgaacc aaccctttaa ggcggcgttc cggattccca
     2941 ggtgatgatg atgcacctga aggagatgtg acggtgtcgg tgcgcaagag acccaagggc
     3001 atgctggcga t
//
LOCUS       DATAJL010000335         2230 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5821,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000335 DATAJL010000000
VERSION     DATAJL010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5821"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..523
                     /locus_tag="VHN39_06515"
     CDS             <1..523
                     /locus_tag="VHN39_06515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEX2816026.1"
                     /translation="QVLYTEDDIGRPKAEAGTDRLAALNPHIFVAGFNGAFDASSADD
                     LVEGVDMVLDGTDDFAVRYEVNAACVRHGKPLISGAIGRWTGQVGVFSGKPCYRCLVP
                     EIPPDAETCVAVGVVGALAGVVGSMMALEAIKLVTGAGETLTGRLLIYDALSAETRTV
                     KVGADPECPVCGG"
     gene            502..930
                     /locus_tag="VHN39_06520"
     CDS             502..930
                     /locus_tag="VHN39_06520"
                     /inference="COORDINATES: protein motif:HMM:NF037170.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816027.1"
                     /translation="MSGLRRVTASLVPELDVSDLDASLAFYVGLLGFSVRYERPEERF
                     AYLKREGAELMLEEAAGPGRRFRTARLEPPYGRGMNLQIRVTDAAALFAAVRAAGAPV
                     IVELEERWYRRRDHEVGGRQFVVADPDGYLLRLFEDLGAR"
     gene            complement(935..1921)
                     /locus_tag="VHN39_06525"
     CDS             complement(935..1921)
                     /locus_tag="VHN39_06525"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519211.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HEX2816028.1"
                     /translation="MAARKPKVIVTRKLPDPVETRMRELFDTELNLTDAPMNRAQLSE
                     AVGRADVLAPTITDKIDATLLERAGPQLKLIANFGAGIDHIDVEAANARGITVTNTPG
                     VLTEDTADLTMALIMAVARRIVEGANVTQAGDFAGWTPTWMMGHRITGKRLGIIGMGR
                     IGQAVARRARAFGLQIHYHNRKPVSPRIAEELEATYWESLDQMLGRTDIVTVHSPHTP
                     ATYHLLSARRLKLLQPHAILINTARGEIIDETALADLLKKGAIAGAGLDVFEFEPKIN
                     PKLLGLPNAVLLPHLGSATIEGRIDMGEKVIINIRTWMDGHKPPDRVIPSML"
     gene            2016..>2230
                     /locus_tag="VHN39_06530"
     CDS             2016..>2230
                     /locus_tag="VHN39_06530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816029.1"
                     /translation="MGGQGDPQQLVITERRLLKGAALGVVAALGLFATGFFTSAQAAA
                     KPEERQTPSGMPVPRYVSLKFDKVNARA"
BASE COUNT          318 a          695 c          820 g          397 t
ORIGIN      
        1 ccaagtgctc tacaccgagg acgatatcgg ccggcccaag gccgaggccg ggaccgaccg
       61 gctggccgcg ctcaacccgc atatcttcgt ggccggcttc aacggagcct tcgacgcctc
      121 gagcgccgac gatctggtgg agggcgtgga catggtgctc gacggcaccg acgacttcgc
      181 cgtccgctat gaggtcaacg ccgcctgcgt gcggcacggc aagccgctga tctccggcgc
      241 catcggccgc tggacgggcc aggtcggcgt attctcaggg aaaccctgct accgctgcct
      301 ggtcccggaa atcccgccgg acgcggagac ctgcgtggcc gtgggcgtgg tgggcgcgct
      361 ggccggcgtg gtgggctcga tgatggcgct ggaggcgatc aagctggtca ccggggctgg
      421 cgagacgctg accgggcggt tgctgatcta cgacgcgctg tcggcggaaa cgcggaccgt
      481 gaaggtgggg gcggacccgg agtgtccggt ctgcggcggg tgaccgcgtc cctggtcccg
      541 gagctggacg tcagcgacct cgacgcatct ctggcgttct acgtcggcct tctgggcttc
      601 agcgttcgct acgagcgtcc cgaggagcgc tttgcctatc tcaaacggga gggcgccgaa
      661 ctgatgctgg aggaagccgc cgggccgggc cgccgcttcc gcacggcgcg tctggagcca
      721 ccgtacgggc ggggcatgaa cctgcagatc cgggtcactg acgcggcggc cctgttcgcg
      781 gccgtgcgcg cggcgggcgc gccggtgatc gtcgagttgg aagaacgatg gtatcggcgc
      841 cgcgaccatg aggtgggcgg tcgccaattc gttgtcgcgg atccggatgg ctacctgctg
      901 aggctctttg aagacctcgg ggcccgctaa agcctcacag catcgacggg atcacccggt
      961 cgggcggctt gtggccgtcc atccaggtgc ggatgttgat gatcaccttc tcgcccatgt
     1021 cgatgcggcc ctcgatggtg gccgagccca ggtggggcaa caggacggcg ttgggaaggc
     1081 cgagcagctt cggattgatc ttgggctcga actcgaagac gtcgaggccg gcgccggcga
     1141 tggcgccctt tttcaggagg tcggcgaggg cggtttcgtc gatgatctcg ccgcgggcgg
     1201 tgttgatcag gatggcgtgc ggctgcagca acttcaaccg cctggccgag agcaggtggt
     1261 aggtggccgg ggtgtgcggc gagtggaccg tgacgatgtc ggtgcggccc agcatctggt
     1321 cgaggctctc ccagtaggtg gcctccagct cctcggcgat ccgcgggctg accggttttc
     1381 ggttgtggta gtggatctgc aggccgaaag cccgggcgcg ccgcgcgacg gcttggccga
     1441 tccggcccat gccgatgatc cccagccgtt tgccggtgat ccggtggccc atcatccagg
     1501 tgggggtcca gccggcgaag tccccggcct gggtgacgtt ggcgccttcg acgatccggc
     1561 gagccaccgc catgatcagc gccatggtca ggtcggcggt gtcctcggtc agcacgcccg
     1621 gcgtgttggt gacggtgatc ccgcgggcat tggcggcttc cacgtcgatg tggtcgatgc
     1681 cggccccgaa attggcgatc agcttcagct gcggtcccgc gcgttccagc agggtcgcgt
     1741 cgatcttgtc ggtgatggtc ggcgccagca cgtcggcgcg gcccaccgcc tcggagagct
     1801 gggcgcggtt catcggcgcg tcggtgaggt tgagctcggt gtcgaacagt tcgcgcatcc
     1861 gcgtctccac cggatcgggg agttttcgcg tgacgatgac tttcggcttg cgggcggcca
     1921 tgtctgtctt gaaaaaggac gtgacgtgaa gagggacgtt tcccgcgccg cttcaccggc
     1981 gcgccgtgtt gtttagaacc tctagcaaag gctccatggg cggccaaggc gacccacagc
     2041 aattggtgat cacagaacgt cgtttgctga aaggcgcggc gctcggtgtc gtggccgcgc
     2101 tcgggctctt cgcgacaggg tttttcacca gtgcgcaggc cgccgccaag cccgaggagc
     2161 ggcagacgcc gtccgggatg ccggtcccgc gctacgtctc gctgaaattc gacaaggtca
     2221 acgcccgggc
//
LOCUS       DATAJL010000336         2433 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44431,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000336 DATAJL010000000
VERSION     DATAJL010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2433)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2433)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2433
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44431"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1065
                     /locus_tag="VHN39_06535"
     CDS             <1..1065
                     /locus_tag="VHN39_06535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2816030.1"
                     /translation="APTLVSQAADKKVREMMGGSPHLLRTLIHMDAPDHPKYRALTQG
                     WFMPQNLKRLEDQIRVIAKAAVAKMAAKVGPDGVGRCDFVQEVALHFPLHVIMSIMGV
                     PPEDEPRMLKLTQELFGAADPELARDGAPPAEREFDFSVIVDFSNYFRALSEAKRAAP
                     TDDLASLIANSQIDGQPISDLEAMSYYIIVATAGHDTTSSSTAGAMWALAENPAELAK
                     VKADPSLIPALVDESIRWTTPVKTFMRTVTEDTSFAGRDLKKGDWMMLCYASGNRDEA
                     VFEDPNHFHADRKPNRHLAFGYGAHLCLGQHLAKMEMRILWEELLPRLSDLALDGTPA
                     MSEAVFVNGPKRLPIRFRMD"
     gene            1075..2100
                     /locus_tag="VHN39_06540"
     CDS             1075..2100
                     /locus_tag="VHN39_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEX2816031.1"
                     /translation="MSHPLEPRLADYISGQMPGATAVVVSGLERISGGASRETYRFRL
                     AYRQGSQAHDRRLILRRDPPASLIDTERRVEFEAYRAFHGSAVPVPKMLWLEEADGPL
                     DHPFFIAEELTGFQTAPAILFAGGYDAVLPTVAQRKWAILGEIARADPVALGLDKVMD
                     VPALDACWRRELDHWEAIFDSDEAEPQPIARAAIRWLRANPPPPSQKLSVVHGDYRTG
                     NFLFDEAGEIRGVLDWEMAHLGDPLEDLAWGFNPIWQFGRGLAGGLVPQDLAIAIWEQ
                     ASGLVADPAALHWWTLFNCLKGQGIWVGSARAFIDGGNREPIMVYPAWWLLNAQDRAI
                     LKVMGKL"
     gene            2097..>2433
                     /locus_tag="VHN39_06545"
     CDS             2097..>2433
                     /locus_tag="VHN39_06545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816032.1"
                     /translation="MTPAVPSVLFELAQLLVRNAAPGVPDAERANALTLSSMLLSLAA
                     EVWDGAADNLVRENRALAALLDEVAAEDDLRLTALGAENARLRGLLIVVQIAAEEADD
                     VPRQNAIWAE"
BASE COUNT          386 a          863 c          808 g          376 t
ORIGIN      
        1 gcgcccaccc tcgtcagcca ggcggccgac aagaaggtcc gcgaaatgat gggcggcagc
       61 ccgcatctcc tgcgcaccct gatccacatg gatgcgccgg accatccgaa gtaccgcgcc
      121 ctgacccagg gctggttcat gccgcagaac ctgaagcgcc tggaggacca gatccgggtg
      181 atcgccaagg ccgcggtggc caagatggcg gccaaggtcg gcccggatgg cgtcggccgc
      241 tgcgacttcg tccaggaggt cgccctgcat ttcccgctgc acgtgatcat gagcatcatg
      301 ggcgtgccgc cagaagacga gccccggatg ctgaagctca cccaggagtt gttcggcgcc
      361 gcggacccgg agcttgcccg cgacggcgcc ccgcccgccg aacgcgagtt cgatttcagc
      421 gtgatcgtcg acttctcgaa ctacttccgg gcgctgtcgg aggccaagcg cgccgcgccc
      481 accgacgacc ttgcgagcct gatcgccaac tcccagatcg acggccagcc gatctcggac
      541 ctggaggcga tgagctacta catcatcgtc gccaccgccg ggcacgacac cacctcgtcc
      601 tcgaccgccg gcgccatgtg ggctttggcc gagaacccgg ccgaactcgc caaggtgaag
      661 gccgacccgt cgctgatccc cgccctggtg gacgaaagca tccgctggac caccccggtg
      721 aagaccttca tgcgcacggt caccgaggac accagcttcg ccggccggga cctgaagaag
      781 ggcgactgga tgatgctctg ctacgcgtct ggcaaccgcg acgaggcggt gttcgaggat
      841 cccaaccatt tccacgccga ccgcaagccc aacaggcacc tggccttcgg ctatggcgcg
      901 cacctgtgcc tgggccagca cctggccaag atggagatgc ggatcctctg ggaggagctg
      961 cttcccaggc tttccgatct ggcgctcgac gggaccccgg ccatgagcga ggctgtcttc
     1021 gtcaacggtc ccaagcgcct gccgatccgc tttcggatgg attgagacga cagggtgagt
     1081 catcccctcg agccgcggct cgccgactac atctcgggcc agatgcccgg ggcgacggct
     1141 gtcgtcgttt ccggcctgga gcgcatctcc ggcggggcct cgcgggagac ctaccggttc
     1201 cggctggcgt atcgccaagg cagccaggcc catgaccgcc ggctgatcct gcggcgcgat
     1261 ccgccggcga gcctgatcga caccgaacgc cgcgtggagt tcgaggccta tcgcgccttc
     1321 catggctcag ccgtgccagt gccgaagatg ctgtggctgg aggaggccga cggcccgctg
     1381 gaccatccct tcttcatcgc cgaggagctg accggcttcc agaccgcgcc cgcgatactg
     1441 ttcgccggcg gctatgacgc ggtcctgccc accgtggccc agcgcaaatg ggccatcctg
     1501 ggcgagatcg cccgcgccga tccggtggcg ctgggtctcg acaaggtcat ggatgtcccc
     1561 gcgctcgacg cctgctggcg gcgcgaactc gaccactggg aggcgatctt cgatagcgac
     1621 gaagccgagc cgcagcccat tgcccgcgcg gccattcgct ggctccgcgc gaacccgccg
     1681 ccgccctccc aaaaactcag cgtcgtgcac ggcgactacc ggaccggcaa cttcctcttt
     1741 gacgaggcgg gcgagatccg tggggtgctg gactgggaga tggcccacct gggcgatccg
     1801 cttgaggacc tggcctgggg cttcaatccc atctggcagt tcggccgggg cctggccggc
     1861 ggtctggttc ctcaagacct ggcgatcgcc atctgggaac aggcgagcgg acttgtggcc
     1921 gaccccgcgg cgctccactg gtggaccctc ttcaactgct tgaagggcca gggcatctgg
     1981 gtgggttcgg cgcgggcctt catcgacggc ggcaaccgcg agccgatcat ggtctacccg
     2041 gcctggtggc tcctgaacgc ccaggaccgg gcgatcctca aggtgatggg caagctatga
     2101 cgccggccgt cccctccgtc ctcttcgagc tcgcccaact gctggtgagg aacgccgccc
     2161 ccggcgtccc cgacgccgag cgggccaacg cgctcacgct ttcctccatg ctgctgtccc
     2221 tggccgccga ggtctgggac ggagcggccg acaacctcgt gcgtgagaac cgggcgctgg
     2281 cggccctgct cgacgaggtc gccgcggagg acgacctgcg gctgacggcg ctcggcgccg
     2341 agaatgcgcg cctgcgcggc ctgctgatcg tggtgcagat cgccgcggag gaggccgatg
     2401 acgtcccgcg gcagaacgcg atctgggcgg agc
//
LOCUS       DATAJL010000337         1734 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_18661,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000337 DATAJL010000000
VERSION     DATAJL010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18661"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..623
                     /locus_tag="VHN39_06550"
     CDS             39..623
                     /locus_tag="VHN39_06550"
                     /inference="COORDINATES: protein motif:HMM:NF015094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/UbiB family protein"
                     /protein_id="HEX2816033.1"
                     /translation="MVRIRSTANTRSDPKRVARLGLATLMKMIFEDGFVHADLHPGNI
                     FITPDDKLALLDLGLVGELDEPHRKGFARFFAAWAQRDGDAMAHIMYGLSESAGTPRD
                     PEAFERYRAAIIEFVGRYWGYRLGQVQVGKVLLDMLGILRRHRVRVNPSFTIVNIAIA
                     VTEGIGKQLDPELDLMSEALPYFIAHPVEGTAKA"
     gene            766..1566
                     /locus_tag="VHN39_06555"
     CDS             766..1566
                     /locus_tag="VHN39_06555"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF019334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX2816034.1"
                     /translation="MEQARVPERYRLIEEVGQGGMAVVYRAQDETLKREVAIKILHQH
                     LAGEPDSKARLEREAQAVAKLRHENILEIFDYSGTGSASSYIVTEFIDGQTLRQFLNG
                     RALGFSELAALICIEVCRALGHAHSLGVIHRDVKPENVMIRKDGLIKLMDFGIAQVLD
                     FQRMTVTGQLLGSPAYMAPEIIEGKQLDFRTDVFSVGIMLYLLATGSCRSPGRTRTRC
                     CGGSPRESSPTRAPSAVASTRCWRASSPARWRAAPTIATPTSCRSAKI"
     gene            1545..>1734
                     /locus_tag="VHN39_06560"
     CDS             1545..>1734
                     /locus_tag="VHN39_06560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816035.1"
                     /translation="MPLGEDLTVYVTEAGLSDVRAELRGYFADPAAYDQALPRRLAAA
                     LTESASAQLAAGRRSKAME"
BASE COUNT          294 a          591 c          570 g          279 t
ORIGIN      
        1 tcgcggtgga gaggatcttg gtcccctcga tgaagctcat ggtcaggatc cgctccaccg
       61 cgaacacccg ctcggatccc aagcgcgtcg cccggctggg gctggccacg ctgatgaaga
      121 tgatcttcga ggacggcttc gtgcacgccg atctccaccc cgggaacatc ttcatcaccc
      181 ccgacgacaa gctggcgctc ttggatctgg gcctggtggg cgagctcgac gagccacacc
      241 gcaaggggtt cgcccgcttc ttcgccgcct gggcgcagcg ggacggtgac gcgatggcgc
      301 acatcatgta cggcctgtcg gagagcgccg gcacgccgcg cgatccggag gccttcgagc
      361 gctaccgcgc cgccatcatc gagttcgtcg ggcgctactg gggttaccgg ctcgggcagg
      421 tccaggtcgg caaggtgctg ctcgacatgc tagggatcct gcggcgccac cgggtccggg
      481 tgaaccccag cttcaccatc gtaaacatcg caatcgcggt gacggaaggg atcggcaagc
      541 agctcgatcc cgagctcgac ctcatgagcg aggccctccc ctacttcatc gctcatccgg
      601 tcgaaggcac cgccaaggct tgagggcgcc gccaaggctt gacggccgcc cgacgcggcg
      661 aggcctgaca ggcgaggcgc gcgccccccg cttgatgcta cctggcaaat ccgcgtaata
      721 tccgagactc agcttggcgc tatgacacgt tcgtcagggt gacggatgga gcaagcccgc
      781 gttccagaac gatacaggct catcgaagag gtggggcaag gtggcatggc ggtcgtgtat
      841 cgcgcgcagg acgagaccct caagcgcgag gtggccatca agatccttca ccagcaccta
      901 gccggtgagc ctgactctaa ggcacgcctc gagcgcgagg cccaggccgt agccaagctg
      961 cgccacgaga acatcctgga gatcttcgac tactccggga ccggctcggc ctcttcgtac
     1021 atcgtcaccg agttcatcga cgggcagacc ctcaggcagt tcctgaacgg gcgcgccctg
     1081 gggttctccg agctggcggc gttgatctgc atcgaggtgt gccgggcgct cgggcatgcg
     1141 cattcgctcg gcgtcattca ccgcgacgtc aaacccgaga acgtgatgat ccggaaggac
     1201 gggctcatca agctgatgga cttcggcatc gcgcaggtcc tcgacttcca gcggatgacc
     1261 gtgacgggcc agctcttggg atcgccggcc tacatggcgc ccgagatcat cgaaggcaag
     1321 cagctcgact tccgcaccga cgtcttctcc gtcgggatca tgctctacct gctggcgacg
     1381 ggcagctgcc gttcgccggg aagaacccgc acgaggtgct gcggcggatc tccgagggaa
     1441 agttcgccga cccgcgcacc gtcggccgtg gcgtcgacca ggtgctggcg cgcatcatca
     1501 cccgcgcgct ggcgcgccgc cccgacgatc gctaccccga cgtcatgccg ctcggcgaag
     1561 atctgactgt ctatgtgacc gaggctggcc tctccgatgt ccgcgccgag ctgcgcggct
     1621 acttcgccga tcccgccgcg tacgaccagg cgctccccag gcggctggcg gcggcgctga
     1681 ccgagtcggc cagcgcgcag ctggccgccg ggcgccggtc gaaggcgatg gagc
//
LOCUS       DATAJL010000338         2162 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_18695,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000338 DATAJL010000000
VERSION     DATAJL010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18695"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..305
                     /locus_tag="VHN39_06565"
     CDS             <1..305
                     /locus_tag="VHN39_06565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HEX2816036.1"
                     /translation="AVLEHLGLAVTRLDDGDLSQPPAGASFDLIICEGAVGRAPAAWT
                     DALALRGRLAVVERDGPVGKACIYLRAEDGVGRREVFDATPPVMVGFAAQHRFALE"
     gene            430..2013
                     /locus_tag="VHN39_06570"
     CDS             430..2013
                     /locus_tag="VHN39_06570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family outer membrane protein"
                     /protein_id="HEX2816037.1"
                     /translation="MSKTLRGRLLAAIFCAGAAAAYAAPVSAETLADAIALAYDTNPN
                     LQAQRSTQRGLDEGYVQARSGFRPQLSLSSQVIFDEFRTPGKARQQGIDTNGDGIPDI
                     FLPAKGSGIQTSNAGQVGLNFSQPIWTGGRTAAAVSASEADILSGRETLRRVESQVML
                     GVIQAFVDVRRDQEGVRIRQENVSVLQKQLEESRARQEVGEITRTDVAQAESRLAAAP
                     ALLSSAVAQLAISRASYAAIVGQNPGELQPEPTLAYLLPNTPDDAFSVAEKFSPVLRA
                     QMFAEQASRARVAAARAERMPSVSLHASYGFGGTVQPFDTGLYSREVTGSAVVTVPLF
                     TGGLTNSRIRQQVERNNTDRINIETQRRSVLQQVTQAWNQWVSSRANIDSTAEAVRAA
                     QVAADGTRMEQQVGLRTTLDTLNAEQELRNDELAAVAARHDEYLAAATVLSAMGRLEA
                     RDLIPTVTQYDPKRNFRKLRFSLGYVPWEEPIAIVDRVLAVPPIPAAQDSPIEAPIGS
                     GLQPPPTGTRGAPVVAPKK"
BASE COUNT          370 a          766 c          698 g          328 t
ORIGIN      
        1 ccgcggtgct ggagcacctg ggcctggcgg tgacccgcct ggacgatggc gatctgtcgc
       61 agcctcccgc cggcgcaagc tttgacctca tcatctgcga gggcgcggtg ggccgcgcgc
      121 cggccgcctg gaccgacgcg ctcgccctgc gcgggcggct ggcggtcgtg gagcgcgacg
      181 gccccgtggg caaggcctgc atctacctgc gcgccgagga cggtgtcggc cgccgggagg
      241 tcttcgacgc cacgccgccg gtcatggtcg gctttgccgc gcaacaccga ttcgccttag
      301 agtgatgttt gaagccaatc ggatgcaaaa tccggggtga aaaaagctta aggtgacgcg
      361 ggctaagtgt tggctacaga gggccacacc aagagaccca gtctctgccg cctatatcgg
      421 ggataccgaa tgtcgaagac ccttcgcgga cgtttgctgg ccgcgatctt ctgcgcaggc
      481 gcggctgcgg cctatgcggc gccggtctca gccgagaccc tcgccgacgc catcgcgctg
      541 gcctacgaca ccaacccgaa cctgcaggcc cagcgctcca cccaaagggg gctggatgag
      601 ggctacgtcc aggcgcgctc cgggtttcgc ccgcagctga gcctcagcag ccaggtgatc
      661 ttcgacgaat tccgcacccc gggtaaggcc cgacaacagg gcatcgacac caacggcgac
      721 ggtattcccg acatcttttt gccggccaag ggctccggca tccagacctc gaacgccggt
      781 caggtcggcc tcaacttctc ccagccgatc tggacggggg gacgcaccgc cgcggcggtc
      841 tccgcctcgg aggccgatat cctgtcgggg cgcgagaccc tgcgccgggt cgaatcgcag
      901 gtgatgcttg gcgtgatcca ggccttcgtg gacgttcgcc gcgatcaaga aggtgtccgg
      961 atccgccagg aaaatgtcag cgtgctgcaa aagcagcttg aggaatccag ggcccgccag
     1021 gaagtgggcg agatcacccg caccgatgtc gcccaggcgg aatcgcgcct ggctgccgcc
     1081 ccggccctgt tgtcgagcgc cgtcgcccag ctggccatca gccgcgccag ctacgccgcc
     1141 atcgtcggcc agaaccccgg cgaactgcag cccgagccga cgctggccta tctcctgccg
     1201 aacacccccg acgacgcctt cagcgtcgcc gagaaattca gcccggtcct gcgcgcccag
     1261 atgttcgccg agcaggccag ccgcgcgcgg gtcgccgcgg cgcgcgccga gcgtatgccc
     1321 agcgtatcgc tccacgccag ctacggcttc ggcggcacag tccaaccttt cgacaccggc
     1381 ctctattcgc gcgaagtcac cggttcggct gtggtcacgg ttccgctgtt caccggcggc
     1441 ctgacgaact ctcgcatccg ccagcaggtg gagcgcaaca atacggaccg catcaatatc
     1501 gagacccagc ggcgctcggt gctgcagcag gtcacccagg cgtggaacca gtgggtgtcc
     1561 tcgcgggcga atatcgattc caccgccgag gcggtccgcg ccgcccaggt cgccgcggac
     1621 ggcacacgca tggagcagca ggtcggtctg cgcaccacgc tcgacacgct caacgccgag
     1681 caggagctgc gcaacgacga gctggccgcc gtggccgcca ggcacgacga atatctcgcc
     1741 gccgccaccg tgctctcggc catgggccgg ctggaggcca gggacctgat cccgacggtc
     1801 acccagtacg accccaagag gaacttccgg aagctgcggt tcagcctggg ttacgtgccg
     1861 tgggaggagc cgatcgccat cgtcgaccgg gtgctcgcgg tgccgccgat tccggcggcc
     1921 caggattccc cgatcgaggc gcccatcggg tctggtctgc agccgccacc gaccgggacc
     1981 aggggcgcgc ctgttgtcgc acctaagaag tagccacatc gaagcggctc cccttcggct
     2041 gaaaatggtc taggctgtag cccaacggat ccattttcgc ttaggcggcc gacccccaat
     2101 gtccgaacag acttcccaag aaccgacgat ggaggagatt ctcgcctcca tccggcgcat
     2161 ca
//
LOCUS       DATAJL010000339         4015 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105700,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000339 DATAJL010000000
VERSION     DATAJL010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4015
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105700"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1402)
                     /locus_tag="VHN39_06575"
     CDS             complement(<1..1402)
                     /locus_tag="VHN39_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2816038.1"
                     /translation="MADSAVPAADLLPPLFADWFAQRGWSPRAHQLAMIERAQAGRDA
                     LLIAPTGGGKTLAGFLPSLIQLADRPPTNAPRSLHTLYISPLKALAVDVERNLNAPIL
                     QMGLPIVAESRTGDTGLSRRQRQRVKPPEILLTTPEQLALLCAWEGARLYFESLECVI
                     LDEIHTLHASKRGDLLALDLARIAKFAPNVRRVGLSATVDDPEVIKAWMANHEKGGND
                     SIDLVRGPAGAEPIVEVLLSEGKVPWAGHTAQHAMQEVYDVIRTSKTALVFVNTRFQA
                     EFAFQELWRLNEDSLPIALHHGSLAAEQRRKVEAAMARGELRAVVCTSTLDLGIDWGD
                     VDLVIQLASPKGASRMVQRIGRANHRLDEPSRALFVPANRFEMLECQAAREAIAENKL
                     DGDPPRIGALDVLAQHVMGCACSEPFNLLALYDEVRSAGPYRDLIWEDFEQVVDFVST
                     GGYALKNYDKFRRIVKG"
     gene            1683..2234
                     /locus_tag="VHN39_06580"
     CDS             1683..2234
                     /locus_tag="VHN39_06580"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816039.1"
                     /translation="MKLQYLAGIALVASLLTATAASATTKVFEYDAGATPVATGSFSY
                     ADGSTGVLGYGDLSAFSVTIGADTYTLSDVAGFTDYVHFAYDTAANTFVTGTNLCGFA
                     GCGFNASLSAINSSGNSGFFFEPAPGQFADYANFTPTSFSTFAISSGTPEPATWAMML
                     IGFGGLGVTMRATRRRAATSVAA"
     gene            2378..3403
                     /locus_tag="VHN39_06585"
     CDS             2378..3403
                     /locus_tag="VHN39_06585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase"
                     /protein_id="HEX2816040.1"
                     /translation="MAPPATQAGHRPSHLPAETPLVVADADDPAALDAMVRRAKAIIT
                     TVGPYQLYGDKLVAACVAAGTDCLDLSGEPNWMAKVIGEYDGAAKASGARIVHSCGFD
                     SIPFELGVWFAEETAKAKLGTYVPRVKGRLRAMRGGLSGGTAASGAATMAAMQKDPSV
                     GMLLMNPFALTPGFQGPDQPPGAAVEHDPDIGADVGPFMMAMINTKNVHRCNALLGHR
                     WGTDFKYDEMSVVVPGAPTEFTGMGPDAPKPGEGPSKAEREAGFYDIAFIGIAADGRQ
                     VKVSVKGDRDPGYGSTSKMLAEAAICLVKEAQATPGGVWTPGAAMGSKLVDRLEANAG
                     LTFTVES"
     gene            complement(3438..3785)
                     /locus_tag="VHN39_06590"
     CDS             complement(3438..3785)
                     /locus_tag="VHN39_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816041.1"
                     /translation="MRKALTAAMAALTLGGAVCATATTADARSFHDGGHFRGGRGGRG
                     GDAIAAGVVGLALGAAIASNHSHYYGGGYGYYGGPAYAYGYGPGYATCVTTRWVWDPY
                     YGRRVPVREAYAC"
BASE COUNT          636 a         1309 c         1401 g          669 t
ORIGIN      
        1 ggcccttcac gatgcggcgg aacttgtcgt agttcttcag cgcgtagccg ccggtcgaga
       61 cgaagtcgac cacctgctcg aagtcctccc agatcaggtc gcggtagggg ccggcgctgc
      121 gcacctcgtc gtagagcgcc aggagattga agggctcgga gcaggcgcag cccatgacat
      181 gctgggccag cacatccagg gcgccgatgc ggggcgggtc gccgtccagc ttgttctcgg
      241 cgatggcctc gcgggcggcc tggcactcca gcatctcgaa cctgtttgcc gggacgaaca
      301 gcgcgcggga cggttcgtcc agccggtgat tggcgcggcc gatccgctgg accatccgcg
      361 acgcgccctt ggggctcgcg agctggatca ccaggtccac gtcgccccaa tcgatgccga
      421 ggtccagcgt cgaggtgcag acgaccgcgc gcagttcgcc ccgcgccatc gccgcctcga
      481 ccttgcgccg ttgctcggcg gccaggctgc cgtggtggag cgcgatgggg agcgaatcct
      541 cgttcagccg ccagagctcc tggaaggcga actcggcctg gaagcgggtg ttgacgaaca
      601 ccagcgcggt cttggaggtc cggatgacgt catagacctc ctgcatggca tgctgggcgg
      661 tgtggccggc ccacggcacc ttgccctccg acagcagcac ctcgacgatg ggctcggcgc
      721 cggcgggccc gcgaaccagg tcgatggagt cgttgccgcc cttctcgtgg ttggccatcc
      781 aggccttgat cacctcggga tcgtcgaccg tggccgacag gccgacgcgg cgcacgttcg
      841 gcgcgaactt cgcgatgcgg gcgaggtcga gggccagcag gtcgccgcgc ttggaggcat
      901 gcagggtgtg gatctcgtcg aggatcacgc actccaggct ctcgaaatag agcctcgcgc
      961 cttcccaggc gcagagtagg gccagctgtt ccggcgtggt gagcaggatc tccggcggct
     1021 tcacccgctg tcgctgccgc cgcgagaggc cggtgtcacc ggtgcggctc tctgcgacga
     1081 tcggcaggcc catctgcagg atcggggcgt tgaggttgcg ctcgacatcc accgccagcg
     1141 ccttcagggg cgagatgtag agggtgtgca ggcttcgcgg ggcgttggtt ggtgggcggt
     1201 cggcaagctg gatcaggctg ggtaggaacc ccgccagggt cttgccgccg ccggtggggg
     1261 cgatcagcag ggcgtcgcgg ccggcctggg cccgctcgat catcgccagc tgatgggcgc
     1321 gcgggctcca gcctcgctgg gcgaaccagt cggcgaacag gggcggcagg agatcggcgg
     1381 caggaaccgc gctgtcagcc atcctcgccc tataacatgt tcttgttatg tttcgagggc
     1441 tgggggcaga gtctccgttg cgcattctac cgcgacctgt tcacagccgc gatgcacggg
     1501 ccggacgaaa cgctgcgccg gcttctgatc aactatcccc tgcccgcggc cgttcgcccc
     1561 cgcaggcgcc gccaagaaaa tcccctcaca ggggaactgt gtttgcgttt acgccataaa
     1621 ctgtttgggt gttccgccaa gttcaggctc acgattttca aattggtcct cggggggttc
     1681 acatgaaact gcagtatttg gctgggatcg ctttggtggc gtccttgctg accgccacgg
     1741 cggccagcgc cacgacgaag gttttcgagt acgacgcggg cgccacgccg gtcgcgacgg
     1801 gctcgtttag ctatgcggac ggctccacgg gggtgctcgg ctacggggac ctctcggcgt
     1861 tttcggtcac gatcggcgcg gacacctata ccctgtccga cgtcgccgga ttcaccgact
     1921 acgtccactt cgcctatgac accgccgcga acaccttcgt gacgggcacg aacctttgcg
     1981 gtttcgccgg ttgcggcttc aacgcgtcgc tgagtgcgat caacagcagc ggcaacagcg
     2041 gcttcttctt cgagccggcg ccgggtcagt tcgccgacta cgcgaacttc actcctacgt
     2101 ctttctcgac cttcgcgatc tcgagcggca cacccgagcc cgcgacctgg gcgatgatgc
     2161 tcatcggctt cggcggtctg ggcgtgacga tgcgcgcaac gcgccgccgg gcggcgactt
     2221 cggtcgcggc ctgacagcaa cggtgaccgc agacgcctga cgtaggcgtc tgcggttgtc
     2281 taagaggttt gcctagggcg tcaagtctag gcagggtgcc cccttcaatg cgggaggcgg
     2341 cccatgaatc ccaacgccga gttcgacatc atcgtctatg gcgccaccgg ctacacaggc
     2401 cggccatcgc ccaagccacc tgcccgccga gacgccgctg gtggtggccg acgccgacga
     2461 tccggctgcg cttgacgcca tggtccgccg ggcgaaggcg atcatcacca ccgtcgggcc
     2521 ctatcagctc tatggcgaca agctggtggc ggcttgcgtg gccgccggaa ccgactgcct
     2581 ggacctgtcg ggcgagccca actggatggc caaggtgatc ggcgaatatg atggcgcggc
     2641 caaggcgtcg ggcgcgcgga tcgtgcattc ctgcggcttc gattccattc ccttcgagct
     2701 gggcgtctgg ttcgccgagg agaccgccaa ggccaagctc gggacctatg tgccgcgcgt
     2761 gaagggccgt ctgcgggcca tgcggggcgg actctccggc ggcacggcgg ccagcggggc
     2821 cgcgaccatg gcggcgatgc agaaggatcc gtcggtcggc atgctgctga tgaacccctt
     2881 cgcgctcacg ccggggttcc agggtccgga tcagccgccg ggcgcggcgg tggagcacga
     2941 tccggatatc ggcgccgacg tgggcccgtt catgatggcg atgatcaaca ccaagaacgt
     3001 tcaccgctgc aacgctctct tgggccatcg ctgggggacg gacttcaaat acgacgagat
     3061 gtcggtggtg gtccccggcg caccgaccga attcaccggc atgggccccg atgcgccgaa
     3121 gccgggcgag gggccgtcga aggccgagcg cgaggccggc ttctacgaca tcgccttcat
     3181 cggcatcgcc gcggacggcc gccaggtgaa ggtctcggtg aagggggatc gcgacccggg
     3241 ctacggatcg acctcgaaga tgctggcgga ggccgccatc tgcctggtga aagaggccca
     3301 ggccacgccc ggcggcgtct ggacgccggg cgcagcgatg gggtcgaaac tggtggaccg
     3361 gcttgaggcg aacgccggcc tcacctttac cgtggagagc tgatcagctc tccccccttg
     3421 ctagaaaaga ggggcggtca gcaggcgtag gcttcgcgga ccgggacgcg gcgaccgtaa
     3481 taggggtccc agacccagcg ggtggttacg caggtcgcat acccggggcc gtagccatag
     3541 gcgtaggcgg gaccgccgta atagccgtag ccgccgccat agtagtgact gtggttcgag
     3601 gcgatcgccg cgccgagcgc caggccgaca acgcctgcgg cgattgcgtc gccgccacga
     3661 ccgccccgac cgccgcggaa atggccgcca tcgtggaagg atcgggcatc ggcggtcgtc
     3721 gccgtggcgc agaccgcgcc gccgagggta agagccgcca tcgcggccgt cagagctttt
     3781 ctcatcttgg cctccttcat gaattccata acggccgggg ggccgaagtg ttcatgacct
     3841 aagcctatga aaaccgggct gaacggcggc tgaacgcccc cgtcaggaag ctgcaggttc
     3901 ggtgagcccc tcgtgctcga gcgccagacg aaccgccggc cgggccttca ttcgcgcgat
     3961 gaaagcgggc aggggatcgg gcaggctgag gccgttcttc tgggcccaca ggcac
//
LOCUS       DATAJL010000340         1649 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_118468,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000340 DATAJL010000000
VERSION     DATAJL010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118468"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..574
                     /locus_tag="VHN39_06595"
     CDS             <1..574
                     /locus_tag="VHN39_06595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816042.1"
                     /translation="NIEQDRKQAKALRPADAIVERTIIFRYVVGAFVVRIPVSTGEKM
                     LVPEQITLSIMKWRLDNLSPGNRWAPVLKRYIEYCSARLNGIGGDADAVPPSLTWHPP
                     IPGKGKGDGGGREHEHEREVCGKVAEVLFDCHGAFEGFVLEDCCEPRLIRCQDRGLGE
                     LVLLACRENLTLCVRLCRESDRVEGVAIRG"
     gene            complement(621..>1649)
                     /locus_tag="VHN39_06600"
     CDS             complement(621..>1649)
                     /locus_tag="VHN39_06600"
                     /inference="COORDINATES: protein motif:HMM:NF013740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX2816043.1"
                     /translation="ANIIVAVILVGGAFYVLRRILEPFILAVFLLLVVDGMARVLMAR
                     APKLPSWAALTLALVLIVGTFGLTLWLSADNAADFAAKAPAYAARINALLLAAAQRFG
                     LMVTPTLSSLLGDLNPARFAGVLATGLSHFVEGAVFVLIYLGFLLASRRGFSAKFGEL
                     FRTDGERAEAGRVFDRIRHGVERYVWVQTVVGVIITSASAGVMLACGLTHVAFWCVII
                     FLANYIPAIGAAIGVLFPAMFGLMEFDGVVRALVMVAALEAVHFVVSHVVQPRMQGRS
                     LNLDPIVVLLALAFWGAVWGVVGAFLSTPLTVAAMAVLAEFRPSRPIAVLLSSDGKPY
                     ADLEGQRT"
BASE COUNT          309 a          584 c          536 g          220 t
ORIGIN      
        1 gaatatcgag caggaccgca agcaggcgaa ggcgttgcgg ccggcggacg cgatcgtcga
       61 gcgcacgatc attttccgct acgtggtcgg cgcctttgtt gtgcgcatcc cggtgagcac
      121 cggggagaag atgctggttc ccgagcagat cacgctttcg atcatgaaat ggcgcctgga
      181 caacctctct ccaggcaacc gctgggcgcc ggtgttgaag cgctacatcg agtactgctc
      241 ggcccgcctc aacggcatcg gcggcgacgc cgacgcggtc ccgccctcgc tcacctggca
      301 tccgccgatc ccgggcaaag gcaagggcga cggcggcggg cgcgagcacg agcacgagcg
      361 cgaagtctgc ggcaaggtgg ccgaggtgct gttcgactgc cacggggcgt tcgaaggctt
      421 cgtgctggag gactgctgcg agccacgcct catccggtgc caggaccgcg ggctgggcga
      481 actcgtcctc ctcgcctgcc gcgagaatct caccctgtgc gtccgtctgt gccgggagag
      541 cgaccgggtc gaaggcgtcg cgatccgggg ttgaggggcc acttcccccg gtccgcacca
      601 ggggcgaccg ccgcgcaggc tcatgtcctc tgtccttcca aatccgcgta cggtttcccg
      661 tcgctggaca gcagcaccgc gatcggccgg ctcggccgga actcggcgag aacggccatg
      721 gcagccaccg tcagcggcgt ggagaggaac gcgccgacca cgccccaaac cgcgccccag
      781 aacgccagcg ccagcagcac gacgatgggg tccaggttca ggctgcggcc ctgcatcctg
      841 ggctgcacca cgtggctgac cacgaagtgg acggcctcca gcgccgccac catgacgagc
      901 gcgcggacca cgccatcgaa ttccatcagc ccgaacatcg ccgggaacag cacgccgatc
      961 gccgccccga tcgccgggat gtagttggcc aggaagatga tcacgcacca gaacgccaca
     1021 tgggtgaggc cgcaggccag catcacgccg gccgaggccg aggtgatgat cacgcccacc
     1081 accgtctgca cccagacata gcgttctacg ccgtgccgga tgcggtcgaa cacccggccc
     1141 gcctcggccc tctcgccgtc ggtgcggaag agctcgccga acttggcgga gaagccccgg
     1201 cgcgacgcca gcaggaaccc cagatagatc aggacgaaca ccgcgccttc gacgaaatgg
     1261 ctgagcccgg tcgccaggac gccggcgaag cgcgccgggt tcaggtctcc cagcaggctc
     1321 gacaatgtgg gcgtcaccat caagccgaac ctttgcgctg ctgccagcag cagggcattg
     1381 attcgcgccg cataggctgg agccttggcc gcgaaatcgg cagcgttgtc cgccgacagc
     1441 catagggtca ggccgaaggt ccccacgatc agcaccaggg ccagggtcaa ggccgcccag
     1501 ctcggcagct tcggcgcgcg cgccatcagc acccgcgcca tcccatccac caccagcagc
     1561 aggaataccg ccaggatgaa gggctccagg atacgccgca gcacatagaa cgccccgccg
     1621 accaggatca ccgccacgat gatattggc
//
LOCUS       DATAJL010000341         2024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92787,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000341 DATAJL010000000
VERSION     DATAJL010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92787"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1157)
                     /locus_tag="VHN39_06605"
     CDS             complement(<1..1157)
                     /locus_tag="VHN39_06605"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX2816044.1"
                     /translation="MFRIAIVGSGPSGLSAAAHAAAREISHVLLEKTDHLSDTIFRYQ
                     KGKHVMATPSLLVLRSDCDFAAGKRETVLDQWNADAAKAGVNVRYKAEAKAITGAQGD
                     FSIALTNGDVIKAETVVLAIGTQGNPNLMRCEGGELPHVQYTLDDPAAYIDEHIVVFG
                     GGDAGIENALGLIADQAQGNVVTLVDRNADFARAKDANVKALLGARDTGRMTVMSETQ
                     ASLVEVGWVTLETPQGASRVKCDRIIARMGSAPPRKFVEDAGIAFTSEARTAFPQLSP
                     TFETTAPGIYVIGALAGYPLIKHCMNQGHDVVEYINGATDLRPADEPILEAKLASLPG
                     KMSVTQWLEFLRARVEILYGLSPLQMREFLLDSEVRAFHAGEMIFERNGIGT"
     gene            1333..>2024
                     /gene="ccsA"
                     /locus_tag="VHN39_06610"
     CDS             1333..>2024
                     /gene="ccsA"
                     /locus_tag="VHN39_06610"
                     /inference="COORDINATES: protein motif:HMM:NF013725.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEX2816045.1"
                     /translation="MAAEVGQFALILAFVLAIVQAAATLWGAARGEAVLMALGRAAAM
                     LQAGFVILAFACLAASYVACDFSVALVAQHSNTQQPLAYRIAATWGSHEGSMLLWVLI
                     LAIYGGAVAWFGRTLRETLQARVLGVQGLIGVAFLGFLIFTSNPFLRLSPIPLEGTEL
                     NPLLQDPGLVSHPPLLYLGYVGFSVAFAFAVAALIEGRVDAAWARWVRPWVLAAWVPL
                     TAGITLGSLWAY"
BASE COUNT          273 a          669 c          701 g          381 t
ORIGIN      
        1 gtcccgatcc cgttgcgctc gaagatcatc tcgccggcgt gaaaagcgcg aacctcggaa
       61 tccagcagga actcgcgcat ctgcaggggc gacaggccgt agaggatctc cacccgggcg
      121 cggaggaatt ccagccactg agtgaccgac atcttgccgg ggaggctcgc aagcttcgcc
      181 tcgagaatcg gctcgtcggc cggtctcagg tccgtggcgc cgttgatgta ttcgaccacg
      241 tcgtggccct ggttcatgca gtgcttgatc agcgggtagc cggccagcgc cccgatcaca
      301 tagatcccgg gcgcggtggt ctcgaaggtc ggcgagagct gtggaaaggc tgtgcgcgcc
      361 tcgctggtga aggcgatgcc ggcgtcctcg acgaacttgc ggggcggcgc tgagcccatc
      421 cgggcgatga tccggtcgca cttcacgcga gacgcgccct gcggggtctc cagcgtcacc
      481 cagcccacct cgacgaggct ggcctgggtc tccgacatga ccgtcatgcg cccggtgtcg
      541 cgggcgccga gcagggcctt gacgttggcg tccttggcgc gggcgaagtc ggcgttgcgg
      601 tcgaccaggg tgacgacgtt gccctgggcc tggtcggcga tcaggccgag cgcgttctcg
      661 atgcctgcgt cgccgccgcc gaagaccacg atgtgctcgt cgatgtaggc cgccggatcg
      721 tccagcgtat attggacatg gggcagctcg ccgccttcgc agcgcatcag gttggggttg
      781 ccctgggtgc cgatggccag caccaccgtc tcggccttga tcacgtcgcc gttggtcaaa
      841 gcgatggaga agtcgccctg ggcgccggtg atcgccttgg cctcggcctt gtagcggaca
      901 ttgacgccag ccttcgcggc gtcggcgttc cattgatcca gcaccgtctc gcgcttgccg
      961 gcggcgaagt cgcagtcgga gcgcagcacc agcaggctgg gagtcgccat gacgtgcttg
     1021 cccttctggt agcgaaagat ggtgtcggag aggtggtcgg tcttctccag caggacgtgg
     1081 ctgatctccc tggcggccgc atgcgcggcg gcgctgagtc cggagggacc cgagccgacg
     1141 atcgcgatgc gaaacacctc tgacatttcc gccccagaac ctcccccaag atgtacgcac
     1201 tggccgattg gcggatgcgt cgcacggctt atcgcttcac gcccccgcga agctttggca
     1261 ctgtagcatc tcccggcccg tgacaatgcg ctcctgagcg ccgcacggtt cccggagggg
     1321 agcacaaagt ccatggcggc ggaagtcggg cagttcgcgc tgattctcgc cttcgtcctg
     1381 gccatcgtgc aggcggcggc gaccctgtgg ggcgcggcgc gcggcgaagc ggtgctgatg
     1441 gcgttgggcc gcgcggcggc gatgctgcag gcgggcttcg tgattctggc cttcgcctgc
     1501 ctggcggcaa gctatgtggc ctgcgatttt tcggtggccc tggtcgccca gcattccaac
     1561 acccaacagc cgctcgccta ccgcatcgcc gccacctggg gcagccacga gggctcgatg
     1621 ctgctctggg tgctgatcct ggcgatctat ggcggggcgg tggcgtggtt cgggcggacg
     1681 ctccgcgaga cactgcaggc ccgcgttctg ggcgtgcagg gcctgatcgg cgtggccttc
     1741 ctgggtttcc tgatcttcac ctcgaacccg ttcctgcggc tgagccctat cccgctggag
     1801 ggcaccgagc tcaatccgct gctgcaggat cccggcctcg tttcccatcc gccgctgctc
     1861 tatctcggct atgtcggctt ttccgtggcc ttcgcgttcg ctgtggcggc cttgatcgag
     1921 ggccgcgtgg acgcggcctg ggcgcgctgg gtccggccct gggtgctggc cgcctgggtc
     1981 ccgctcaccg ccggcatcac gctgggcagc ctttgggcct atta
//
LOCUS       DATAJL010000342         2384 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_5969,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000342 DATAJL010000000
VERSION     DATAJL010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2384
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5969"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..888
                     /locus_tag="VHN39_06615"
     CDS             <1..888
                     /locus_tag="VHN39_06615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEX2816046.1"
                     /translation="EHERAEADRGLRAAEAAASEARELRASLAAHAEAAATRLNEVSG
                     QIRETARIEPEELAQKLADEAVALPSDPGGVEAHLYNLERQRDAIGPVNLRAEEEAVE
                     HAARLETMQAERSDLTGAIARLREGINELNSEGRDRLLAAFEVINEHFKTLFQALFQG
                     GQAELRLVESEDPLEAGLEIYACPPGKRMATMSLMSGGEQALTATALIFAVFLAQPAP
                     ICVLDEVDAPLDDANVDRFCNMLDEMRRRTETRFIAITHNPVTMARMDRLFGVTMAER
                     GVSQLVSVDLHQAEAMAAQ"
     gene            1067..1417
                     /locus_tag="VHN39_06620"
     CDS             1067..1417
                     /locus_tag="VHN39_06620"
                     /inference="COORDINATES: protein motif:HMM:NF021073.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEX2816047.1"
                     /translation="MPHPKDPPDKALQSLDQRLGAAEAAQARTVSPDTHAAMAQGYRF
                     VGEVVGGVLGGVGLGWLLDRFAHTQPWGVIGGLLIGAGFSIFTAVTAAARASKNEMDR
                     QAPALSVPDDDDED"
     gene            1426..2253
                     /locus_tag="VHN39_06625"
     CDS             1426..2253
                     /locus_tag="VHN39_06625"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEX2816048.1"
                     /translation="MANQPAIEPMHQFMIHKIVELPTFHVGTLTVDMSITNSVASMIV
                     GALILIAFFVLTARAEIVPNRGQALAESLYNIIDRVLVGPIIGAGGRPYVPYIFTLFL
                     VILVLNLMSVLLAVGNIAGQDWTFAVTSQLAVTATLAVLTFFSVFILGFVKHGPKFLT
                     LFWVPGMGVFGGAAMVLIEMISYFVRPLTLALRLFGNMLGGHVVMSLFGSFVVALAIV
                     GLAGGISTLAFIPSVLSFTMIVALTGLELVVAILQAFVFAALATVYLNEVVNFGHGH"
BASE COUNT          394 a          810 c          760 g          420 t
ORIGIN      
        1 gagcacgaac gcgccgaagc cgatcgcggc ctgcgcgccg ccgaggccgc agcttcggaa
       61 gcccgggagc tgcgcgcgag cctcgccgcc cacgccgaag ccgccgccac gcgcttgaat
      121 gaggtctcag gtcagatccg cgagaccgcg cgcatcgagc ctgaagaact ggcgcaaaag
      181 cttgccgacg aggccgtggc ccttccgtcc gaccccggcg gcgtcgaggc ccatctctac
      241 aatctcgagc gccagcgcga cgccatcggc ccggtgaacc tgcgtgccga ggaagaggcc
      301 gtggaacacg ccgctcgcct cgagaccatg caggcagaac gctccgacct gaccggcgcg
      361 atcgcccgcc tgcgcgaagg gatcaacgag ctgaatagcg agggccgcga ccggctgctc
      421 gccgccttcg aggtgatcaa cgagcacttc aagacgctct tccaggccct gttccagggt
      481 ggtcaggccg agctgcggct cgtcgaatct gaagacccgc tggaggcggg cctggaaatc
      541 tacgcctgcc cgcccggcaa gcgcatggcg accatgagcc tgatgagcgg cggcgagcag
      601 gcgctcaccg ccacggcctt gatcttcgcg gtgttcctgg cccagccggc gccgatctgt
      661 gtgctcgacg aggtggacgc cccgctggac gacgccaacg tcgaccggtt ctgcaacatg
      721 ctcgatgaga tgcgccggcg caccgagacc cgattcatcg ccatcaccca caatccggtg
      781 accatggccc gcatggaccg cctgttcggg gtcaccatgg ccgagcgcgg ggtgtcccag
      841 ctggtctccg tcgatctcca ccaggcggag gctatggcgg cccagtgacc agggtcgtga
      901 gcctggggcg cggaccatgt gtcgcgatct cacaaatgat tagcaaaaac aatcagataa
      961 tgtgaggttg gccagccttg acgcgccgca gcacggtcta taggttccgc gcgacctgaa
     1021 gccccagccg tggcggcgac gtcgcggtct ctaggcctcc cgacgtatgc cacaccccaa
     1081 agatccgccg gacaaggctc tccagagcct cgatcagcgc ttgggagcgg ccgaggcggc
     1141 gcaagcccgc acggtgagtc ccgatactca cgcggccatg gcgcagggtt accgcttcgt
     1201 gggggaagtg gttggcgggg tgctcggtgg tgtcggcctt ggctggctct tggatcgctt
     1261 cgcgcatacg cagccctggg gcgtgatcgg cggactgctg atcggcgccg ggttttcgat
     1321 cttcaccgcg gtcacggctg cggcgagggc gagtaaaaac gagatggacc gccaggcccc
     1381 tgcgctcagc gttccagatg acgacgacga ggactaagac cgcccatggc gaaccaaccc
     1441 gccatcgaac cgatgcacca gttcatgatc cacaagatcg tggagctgcc gaccttccac
     1501 gtcggtacgc tgacggtcga catgtcgatc accaattcgg tggccagcat gatcgtgggc
     1561 gccttgatcc tgatcgcctt ctttgtgctt accgcgcgcg ccgagatcgt gccgaaccgc
     1621 ggccaggccc tggccgagag cctctacaac atcatcgacc gcgtgctggt cggcccgatt
     1681 attggggccg gaggccggcc ttacgtaccc tatattttca cgctcttcct ggtcatcctg
     1741 gtgctgaacc tgatgagcgt gctgctggcc gtcggcaaca tcgccggcca ggactggacc
     1801 ttcgccgtga cctcgcaact ggcggtgacc gcgacgctcg cggtgctcac cttcttcagc
     1861 gtcttcatcc tgggcttcgt gaagcacggc ccgaaattcc tgaccctgtt ctgggtgccc
     1921 ggcatgggcg tcttcggcgg cgccgcgatg gtgctgatcg agatgatctc ctacttcgtg
     1981 cggccgctga cgctcgccct gcgtctcttc ggcaatatgc tgggcggcca cgtggtgatg
     2041 agcttgttcg gctccttcgt ggtggcgctg gccatcgtcg ggctcgccgg cggcatctcc
     2101 accctggcgt tcatcccgag cgttctgtcc ttcacgatga tcgtcgcgct gaccggcctg
     2161 gagctggtgg tggcgatcct gcaggccttc gtcttcgcgg cgctggccac cgtctatctc
     2221 aacgaggtcg tgaacttcgg tcacggccac taacccaacc cgactatcga caagaggact
     2281 accaatggaa ccccacgccg ccgtcgctac cgtcatcgat ttcgccaagt ccgctaagct
     2341 tatcggcgcg ggcctcgccg ccatgggcat gatcggcgcc ggtg
//
LOCUS       DATAJL010000343         1617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_80406,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000343 DATAJL010000000
VERSION     DATAJL010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80406"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..224)
                     /locus_tag="VHN39_06630"
     CDS             complement(<1..224)
                     /locus_tag="VHN39_06630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816049.1"
                     /translation="MTIRAIFKAVLLASAVVATASAAHAQSTSAHAMVVGGHAQGSGG
                     PFACATSGPQAQEAHFFNTGIPLPTEGYAG"
     gene            complement(333..>1617)
                     /locus_tag="VHN39_06635"
     CDS             complement(333..>1617)
                     /locus_tag="VHN39_06635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEX2816050.1"
                     /translation="SSDLPLVSADLTLRTGGWADPQGLAGAFGMTADMLTQGTRTRSA
                     REIAQQTEALGATLESGASLEASSVTLNVMPDKLDVAMAIMADVVRNPAFAAEELERQ
                     RAQSLDGLRVAYQEPGQVSAYAAAPVVFAGTAFGHVATGTPASLAKLKPADLAALHKT
                     WFRPDNAILVLTGDITAEQGFALAEKAFGGWARPAQPMPAAPAIVPQARPRAIAIDLP
                     GTGQAAVNLAKSGIARSDPDYYPGIVANTLLGGGYSSRLNLEIRVKRGLSYGASSNLA
                     ANRSTGSFRAAAQTKNETAVQVMDLIVEQMTSMAAAPASMDELTARKSNLVGSYGRRL
                     ATTNGLADILGNLALYGVPLDEITRYTTRVEAVSPAQVQAFAARVMDPAKASVIVAGD
                     VKTFGAALKAKRPDLEVIPVSELDLDSPTLRKAAN"
BASE COUNT          217 a          525 c          611 g          264 t
ORIGIN      
        1 caaccagcgt agccttcggt tggcagcgga atgcccgtgt tgaaaaagtg tgcttcctgc
       61 gcctggggtc cgctggtggc gcaggcgaag ggcccgccgc tgccctgcgc gtgtccgcca
      121 accaccatgg cgtgggccga ggtggattgc gcgtgggcgg cgctcgccgt ggcgacgacc
      181 gccgaagcca gcagcacggc tttgaaaatg gctcggatgg tcatctgttg gaccctttgc
      241 gaggcggcag ccgcgctgac ccgcggccag cttcccgacc gtcctcgcct aaccgcgttt
      301 tggcaacctg attcccgtct aggttgcagg ctctagttgg cggccttccg cagcgtcggc
      361 gaatccaggt cgagctcgct gaccgggatc acctccaggt caggccgctt ggccttgagc
      421 gcggcgccaa aggtcttcac gtcgccggcg acgatcacgc tggccttggc cgggtccatg
      481 acgcgggcgg cgaaggcctg cacctgggcc gggctcaccg cctcgacccg cgtcgtgtag
      541 cgggtgatct cgtccagggg cacgccgtaa agagcgaggt tgcccaggat gtcggccagg
      601 ccattggtgg tggccaggcg ccgcccgtaa ctgcccacca ggttcgattt gcgcgcggta
      661 agttcatcca tcgaggcggg cgcggcggcc atggaggtca tctgctcgac gatcaggtcc
      721 atcacctgca cggcggtctc gttcttggtc tgggccgcgg cgcggaacga gccggtggag
      781 cggttggccg ccaggttcga cgaggcgccg taggagaggc cgcgcttgac ccggatctcc
      841 aggttcaggc gcgaggagta gccgccgccc agcagggtgt tggcgacgat gccgggatag
      901 tagtccgggt cgctgcgcgc gatgccggac ttggcgaggt tcaccgccgc ctggccggtg
      961 ccgggcaggt cgatggcgat ggcccgaggc ctggcttgag ggacgatggc gggggcggcc
     1021 ggcatgggct gcgccggcct ggcccagccg ccgaaagcct tttccgcgag cgcgaagccc
     1081 tgctcggcgg tgatgtcgcc ggtcagcacc aggatggcgt tgtcaggcct gaaccaggtc
     1141 ttgtgcaggg cggcgaggtc ggcgggcttc agcttggcca gcgaggccgg cgtgccggtg
     1201 gccacgtggc cgaaggcggt gccggcgaac accaccgggg ccgcggcgta ggccgagacc
     1261 tgccccggtt cctgataggc gacgcgcagg ccgtcgaggc tctgggcccg ctggcgttcc
     1321 agctcctcgg ccgcgaaggc cgggttgcgg accacatcgg ccatgatcgc catggccaca
     1381 tccagcttgt cgggcatgac gttgagggtg acggagctgg cctccaggct cgcgccggat
     1441 tccagggtcg cgcccagggc ttcggtctgc tgggcgatct cgcgggccga acgggtcctg
     1501 gtgccctggg tcagcatgtc ggcggtcatg ccgaacgcgc cggcgagccc ttgcggatcg
     1561 gcccagccgc cggtcctgag ggtcaggtcg gcgctgacca gcggcaggtc ggaggac
//
LOCUS       DATAJL010000344         2196 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44638,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000344 DATAJL010000000
VERSION     DATAJL010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2196)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2196)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44638"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..259
                     /locus_tag="VHN39_06640"
     CDS             <1..259
                     /locus_tag="VHN39_06640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816051.1"
                     /translation="DILADVLDPDHPPFEPALGRGGPVAPVGANIRSYEIEDAPPYDH
                     GNYLPSGALLDPGPPPQGTPDWRNPALFMASAFRGRAAVWP"
     gene            complement(383..2002)
                     /locus_tag="VHN39_06645"
     CDS             complement(383..2002)
                     /locus_tag="VHN39_06645"
                     /inference="COORDINATES: protein motif:HMM:NF044706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816052.1"
                     /translation="MTALDLADIQGNIHRPYGRFGFPHTRHLFFTISEAAAGRRFVQG
                     VRPRITSAEPWERFETADGQSLVRKPSITLNLGFTFLGLHALDLPTRTLRMLPDEFID
                     GMSCRADILGDVGPSAPERWDPLWRTGGKPAPVHIWISLNVGASADGTPLPVLEEWTQ
                     WLLGLTQPAGGVALLTGHGAEGAERWQDCSALMEPGQDGAMIATPREHFGFTDGISDP
                     VFLGQFGPEAEALAAIGGGKIAEGPYAEASSWSALETGEFILGHVDEGQEFPVAAFPR
                     GLTRNGTFMVWRKLRQDVDAFESYVAAQAETWMRVTAATDRNEANETVRAKMVGRWRS
                     GVPLIVAPTWAQHEAIMAQYADCIEIALRKPRDSAEQQRLAAYSKMLTGFRYGDDLDG
                     GKCPFGSHIRRANPRDMLDPVLSATQGASTLTNRRRILRRGLPYVDPDGQRGVVFMAV
                     CSSIFRQFEFIQQQWMSYGLDLEAGNDTCPLVGHRAQTTKHMVPAGPTNTVPVIAGDL
                     PPFVTTRGGDYFFLPSLNAVRMIAMGTVDPT"
     gene            complement(1999..>2196)
                     /locus_tag="VHN39_06650"
     CDS             complement(1999..>2196)
                     /locus_tag="VHN39_06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816053.1"
                     /translation="SDLPTVLKALFLQQQFIRFAIEAQGLDDATLHARFGGFLGAVRP
                     GEDAPTQPAGEIRAPEVEWLR"
BASE COUNT          350 a          712 c          775 g          359 t
ORIGIN      
        1 ggatatcctg gcggatgttc tggatccaga ccatccgcca ttcgagccgg cgttgggacg
       61 aggcggccct gtggccccag ttggtgcgaa catccgctcc tatgaaatcg aagacgcgcc
      121 gccctacgac cacgggaatt atcttccttc gggcgcgctc ttggatcccg ggccgccacc
      181 tcaaggaact cctgattgga ggaatccggc gctgttcatg gcgagcgcgt ttcgcggccg
      241 tgccgccgtt tggccgtagc tgagagggcg tcccacggag ctgactgaat tcgcgtcgaa
      301 ggagggtaga ctagatgaac gatcacccac ctgcttgagc cgtggttcca gacctcggtc
      361 gaggccgtcg cccaaggggc gctcaggtcg gatcgaccgt ccccatggcg atcatccgca
      421 ccgcgttgag actgggcagg aaaaagtagt cgccgccgcg ggtggtgacg aagggcggca
      481 gatccccggc gatgaccggg accgtgttcg tcggccccgc ggggaccatg tgcttggtgg
      541 tctgcgcgcg gtggccgacc agcgggcagg tgtcgttccc cgcctccaaa tcgaggccgt
      601 agctcatcca ctgctgctgg atgaactcga actggcggaa gatgctggag cagacggcca
      661 tgaacaccac gccccgctga ccgtccgggt cgacgtaggg caggccgcgc cgcaggatcc
      721 gcctgcggtt ggtaagcgtg ctggcgccct gggtggcgct gaggacgggg tcaagcatgt
      781 cgcgtgggtt ggcgcggcgg atatgcgacc cgaacgggca tttcccgccg tcgaggtcgt
      841 cgccgtaccg gaagccggtc agcatcttgg aataggcggc gaggcgctgc tgctcggcgc
      901 tgtcgcgggg cttgcgcagg gcgatctcga tgcagtcggc gtactgcgcc atgatcgcct
      961 catgctgggc ccaggtgggc gcgacgatca gcgggacccc cgaacgccaa cgcccgacca
     1021 tcttggcgcg cactgtttcg ttcgcttcgt ttcggtccgt tgcggcggtc acccgcatcc
     1081 aagtctcggc ctgagccgcg acataggact caaacgcgtc gacgtcctgg cgcagcttgc
     1141 gccacaccat gaaggtcccg ttgcgggtca gcccgcgcgg aaacgccgcc accggaaact
     1201 cctggccctc atcgacgtgg ccgagaatga attctccggt ttcgagtgcg ctccagctgc
     1261 tggcctcggc ataggggccc tcggcgatct tgccgccgcc gatcgccgcc agcgcctcgg
     1321 cctcaggccc gaactggccg agaaagactg ggtcgctgat tccgtcggtg aagccgaagt
     1381 gttcgcgggg ggtggcgatc atcgcgccgt cttggcctgg ctccatcagg gcagagcaat
     1441 cctgccagcg ctccgcgccc tccgcgccgt ggccggtcag cagcgcaacg ccgccggcgg
     1501 gctgggtcag gccgagaagc cactgggtcc actcctcgag gaccggcagc ggggtcccgt
     1561 cggcacttgc gccgacattc agtgaaatcc agatgtggac cggcgcgggc ttgccgcccg
     1621 ttcgccagag cggatcccag cgctcgggcg cgctcgggcc gacgtcgccc aggatgtcag
     1681 cgcggcagct catgccgtcg atgaattcgt ccggcagcat gcgcagcgtc cgggtcggca
     1741 gatctagggc gtggagcccc agaaaggtga agccgaggtt cagggtgatc gagggcttgc
     1801 gcaccaggga ctggccgtcg gccgtctcga accgctccca gggttcggcc gaggttatcc
     1861 gtggccgcac accttgaacg aagcggcggc cggcggcggc ctcggagatc gtaaagaaca
     1921 ggtggcgggt gtgcggaaat ccgaagcggc cataaggccg atggatattg ccctggatgt
     1981 cggcgaggtc gagcgcggtc atcggagcca ctccacctca ggcgcgcgga tctctccggc
     2041 aggctgggtc ggcgcgtcct cgccgggccg gaccgcgccg aggaagccgc cgaaccgggc
     2101 gtggagcgtg gcgtcgtcga ggccctgcgc ctcgatcgca aaccggatga actgctgctg
     2161 caggaacagc gccttgagca ccgtgggaag gtcgga
//
LOCUS       DATAJL010000345         2317 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44668,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000345 DATAJL010000000
VERSION     DATAJL010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44668"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(216..1277)
                     /locus_tag="VHN39_06655"
     CDS             complement(216..1277)
                     /locus_tag="VHN39_06655"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2816054.1"
                     /translation="MTRLALVMIARDEARAIARALESARPHVDRMIVLDTGSQDDTRE
                     IARACGAQVHDFVWCDDFAAARNAALAHSDADWNLILDADEWIEDGAEALGLETLPAG
                     GGGFLGEVRIANEMDQPGAEGTGQSWLARVLPRGVVYEGRIHEQPAGGLPHRRLSLHI
                     GHDGYTTESLARKGDRNEALLMAELQATPQDPYLWFQLAKEHQARGRAPQAAFSFVEA
                     LRLAPADAGYRHALVVRALVALKDNGQIAEALTLADAEVAHWQDSPDFYFAIGDLYLE
                     AASQEPDRAMDHFLPVVESAWKRCLEIGERPDLDGAVAGRGGHMAAHNLSVFYETLGR
                     RAEAAEYAALAKRMRESMV"
     gene            1465..1764
                     /gene="rpmB"
                     /locus_tag="VHN39_06660"
     CDS             1465..1764
                     /gene="rpmB"
                     /locus_tag="VHN39_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEX2816055.1"
                     /translation="MSRRCELTGVGPMVGHNVSHSNIKTKRRFLPALSPATLQSDALG
                     QSYRLRITNAALRTLDFRGGLDAFLLKASDENLSPKAQKIKRQLKAKLSEQAVAA"
     gene            complement(1830..>2317)
                     /locus_tag="VHN39_06665"
     CDS             complement(1830..>2317)
                     /locus_tag="VHN39_06665"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816056.1"
                     /translation="ATTLYVADSGAPKNDSTVNSGTSIGDGGLQKWSLVGHTWTLDYT
                     LAAGLNLVANTAASGTTGLLSLTGELINGEVELFATNYTIGDTDQTYLYGITDLLSAT
                     TRPVTEQFTQLAVAPTDTTFKGVAFAPAPIPEPQAYALMIAGFGVLGGLARRRRRMIC
                     A"
BASE COUNT          361 a          798 c          779 g          379 t
ORIGIN      
        1 ctcgtaataa ctgactggtc agttattaat gcaaacgcgg gcgcgcgaca atggatgcat
       61 gcgaaaacgc aggaacgggc gacggggatg atgcaggggc gcggcctgtg ggccggaaca
      121 cgggcgaaac gaatcaggac cgaatcagcg acctcgcttg attcagcctt tgttcaccgc
      181 aacatattgt atctcaaggg ccttcggaca caaggctata ccatggattc gcgcatccgt
      241 ttggccaggg cggcgtattc ggcggcctcg gcgcgccgtc ccagggtctc gtagaagacc
      301 gacaggttgt gggcggccat gtgcccgccg cggccggcca ccgcgccgtc cagatccggg
      361 cgctcgccga tctccaggca ccgcttccag gccgattcca ccacgggcag gaagtgatcc
      421 atcgcccggt cgggctcctg ggacgcggcc tccagataga ggtcgccgat tgcgaagtag
      481 aagtccggcg agtcctgcca gtgcgccacc tcggcgtcgg cgagtgtcag ggcctcggcg
      541 atctggccgt tgtccttcag cgcgaccaac gcgcgcacca ccagggcgtg gcggtagccg
      601 gcgtcggcgg gcgcgagccg cagggcctcc acgaatgaga acgccgcctg gggcgcgcgg
      661 ccccgggcct ggtgctcctt ggcgagctgg aaccacaggt aggggtcctg cggcgtcgcc
      721 tgcagctcgg ccatcaggag cgcttcgttg cggtcgccct ttcgggccag gctctcggta
      781 gtgtagccgt cgtggccgat gtggagcgac aggcgccgat ggggcaggcc gccggccggc
      841 tgctcgtgga tacggccctc gtagaccacg ccgcggggca ggacgcgggc gagccaggac
      901 tggcccgtcc cctccgcgcc cggctggtcc atctcgttgg cgatcctgac ctcgccaagg
      961 aagccgccgc cgccggccgg cagggtctcc agccccagcg cctcggcccc atcctcgatc
     1021 cactcgtcgg catccaggat caggttccag tccgcgtcgg agtgggccaa ggcggcgttt
     1081 cgcgccgcgg cgaagtcgtc gcaccagacg aagtcatgca cctgcgcgcc gcaggcccgg
     1141 gcgatctcgc gggtgtcgtc ctgggagccg gtgtccagca cgatcatccg gtccacatgc
     1201 ggccgcgcgc tctccagcgc ccgggcgatg gcgcgcgctt catcccgggc gatcatcacc
     1261 aaggccagcc gggtcacccg cgaacgcctc cgccgccata cgagggttcc tgtatagaga
     1321 cgctcgccgc gcgcgggaaa cttcaccgca ggatgacagg atcgcccgcc tcaccttgac
     1381 gcggagcctc cccttcgcct atatcgcccg ctctcgcgcg ggcccggcct gccgcgtccc
     1441 tgttctcgcg aaggttttcg tcccatgtcg cgtcgttgcg aactcaccgg tgtcggcccg
     1501 atggtcggcc acaatgtgag ccactcgaac atcaagacca agcgccgctt cctgcccgct
     1561 ttgtcgcccg ccaccctgca gtccgacgcg ctgggccagt cctatcgcct gcgcatcacc
     1621 aatgcggcgc tcaggaccct cgacttccgg ggcggcctcg acgccttcct gctgaaggcc
     1681 agcgacgaaa acctgtcgcc caaggcccag aagatcaagc gccagctgaa ggccaagctc
     1741 tccgagcaag ccgtcgcagc ctgacacgct tcaaagactg tcgttccgaa gagggccgct
     1801 ggaaacagcg gccctttttg ttggcgtcct caggcgcaga tcatccgccg gcgccggcgc
     1861 gcgaggccgc ccagcacgcc aaagcccgcg atcatcaggg cgtaggcctg cggctccgga
     1921 atcggcgcag gggcgaaagc cacccctttg aaagtggtgt ccgtcggcgc gacggcgagc
     1981 tgggtgaact gctcggtcac gggccgcgtg gtcgcgctga gcaggtctgt gatcccgtag
     2041 agataggtct gatcggtgtc gccgatggtg tagttggtgg cgaacagttc gacctcgccg
     2101 ttgatgagct ccccggtcag gctcagcagg ccggtagtgc cggacgcggc ggtgttggcg
     2161 accaggttca ggccggccgc cagggtgtag tccagggtcc aggtgtggcc caccaggctc
     2221 catttctgca ggccgccgtc gccgatcgag gttccgctgt tgaccgtgga atcgttcttc
     2281 ggcgcgccgc tgtcggccac atagagcgtg gtggcgt
//
LOCUS       DATAJL010000346         1887 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_6085,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000346 DATAJL010000000
VERSION     DATAJL010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6085"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..548)
                     /locus_tag="VHN39_06670"
     CDS             complement(<1..548)
                     /locus_tag="VHN39_06670"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2816057.1"
                     /translation="MADPAIQLQAIERTFRLDSVEVHALRGVDLTVDKGAFVAIMGSS
                     GSGKSTLMNIVGCLDRPSSGRYLLEGVDVAGLSEPQLAAIRSQRIGFVFQSFNLLART
                     SALENVMLPLLYGPAASMRPGDRLERARAVLAKLGLAEREHSMPNQLSGGQQQRVALA
                     RALINEPAILLADEPTGNLDSKT"
     gene            complement(559..1776)
                     /locus_tag="VHN39_06675"
     CDS             complement(559..1776)
                     /locus_tag="VHN39_06675"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2816058.1"
                     /translation="MTTWKILAGLATAVVLVGAGWAGWNAFKPKAATYATAAVDRGRI
                     QRSITASGSVNPEVTVQVGAFVSGTINTLSCDYNTPVRKGQICATIDPRPYQLIAAED
                     RAAVQSAKAQLLKDQASLKDANLTYGRDAGLLKLDSISQLAVDDALNLRDQAVGQVTL
                     DRATIVQRQAALDAAQVNVGYTDIVSPVDGVVVARNVTVGQTVASSFQTPTLFLIAKD
                     LTRMQVDTNVSESDIADAVAGSRATFTVEAYPGRVFKGLVTQVRQAPISVQNVITYDV
                     VLAAENPDLNLKPGMTATAQIIAAERKDVLRVPVQALHFTPEAAGGAPAGPSAARGHG
                     AGQTPAQPQVWILLDGRPKAVPVSTGLDDDANVEITGGGLKVGDRVITSANRPGAAAK
                     PRASGITPTRVGR"
BASE COUNT          255 a          631 c          686 g          315 t
ORIGIN      
        1 gtcttggaat ccaggtttcc ggtgggctcg tccgccagca ggatcgccgg ttcattgatc
       61 agcgcccggg ccagcgccac ccgctgctgc tgaccgccgg agagctggtt gggcatgctg
      121 tgttcgcgct cggccaggcc gagcttggcg agcaccgcgc gggcccgctc gaggcggtcc
      181 ccggggcgca tgctggccgc cggaccatag agcagcggca gcatgacgtt ctcgagcgcg
      241 ctggtccggg ccagcaggtt gaagctctgg aacacgaagc cgatgcgctg gctgcggatc
      301 gccgcgagct gcggttcgga gaggccggcc acgtccacgc cctccaggag gtagcgcccg
      361 ctcgacggcc ggtcgaggca gcctacgatg ttcatcagcg tcgacttgcc ggaccccgac
      421 gagcccatga tggcgacgaa ggcgcccttg tcgacggtca ggtcgacgcc gcgcaaggca
      481 tggacctcga cggagtccag ccggaaggtg cgctcgatcg cctgcagctg gatcgccggg
      541 tcggccatcg ccggaggctc agcggccgac gcgcgtcggg gtgatcccgg aggcgcgcgg
      601 cttcgccgcc gccccggggc ggttcgccga ggtgatcacc cgatccccga ccttgaggcc
      661 gccgccggtg atctccacgt tggcgtcgtc gtccagcccg gtgctgaccg gcacggcctt
      721 gggccggccg tccagcagga tccagacctg gggctgcgcc ggcgtctgtc cggcgccgtg
      781 tcccctggct gcggaggggc ccgccggcgc gccgccggcg gcttcggggg tgaagtgcag
      841 ggcctggacc gggacgcgca gcacgtcctt gcgctcggcg gcgatgatct gggccgtggc
      901 ggtcatgccg ggcttgagat tgaggtccgg attttccgcg gcgagcacca catcgtaggt
      961 gatgacgttc tgcacgctga tgggcgcctg gcgaacctgg gtcaccaggc ccttgaacac
     1021 ccggccgggg taggcctcca ccgtgaaggt ggcccgcgac ccggcgacag cgtcggcgat
     1081 atcggactcg ctgacattgg tgtcgacctg catgcgggtc aggtccttgg cgatgaggaa
     1141 gagggtcggg gtctggaagc tggaggccac ggtctggccg accgtcacgt tgcgcgcgac
     1201 caccaccccg tcgacgggcg agacgatgtc ggtgtagccc acgttgacct gggcggcgtc
     1261 cagcgccgcc tggcgctgca cgatggtggc ccggtcgagg gtcacctggc ccaccgcctg
     1321 gtcgcgcagg ttgagcgcat cgtcgaccgc cagttgggag atcgaatcca gtttcagcag
     1381 tccggcgtcg cggccgtagg tgaggttggc gtccttcagg ctggcctggt ccttgagcag
     1441 ctgcgccttg gcgctctgca ccgcggcgcg atcctcggcg gcgatcagct gatagggacg
     1501 cggatcgatc gtcgcgcaga tctgcccttt ccgaacgggg gtgttgtagt cgcagctcag
     1561 cgtgttgatc gtcccggaga cgaaggcgcc cacctggacc gtgacctcgg gattgacgct
     1621 gccgctggcg gtgatcgagc gctggatccg gccgcggtcg accgcggcgg tggcgtaggt
     1681 cgccgccttg ggcttgaacg cattccagcc cgcccatccg gccccgacga gcacgacggc
     1741 cgtcgccagt cccgccagaa tcttccaggt cgtcatgcgt ttcactatca attgctaact
     1801 gtcccgacgg cgcgcgacat tgacctcgct caacgcaaag gcggggcggc ccttcgcttg
     1861 ttgggccctt ctcttgttgc ggaggac
//
LOCUS       DATAJL010000347         2324 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_31915,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000347 DATAJL010000000
VERSION     DATAJL010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31915"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..146
                     /gene="tuf"
                     /locus_tag="VHN39_06680"
     CDS             <1..146
                     /gene="tuf"
                     /locus_tag="VHN39_06680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284872.1"
                     /note="EF-Tu; promotes GTP-dependent binding of
                     aminoacyl-tRNA to the A-site of ribosomes during protein
                     biosynthesis; when the tRNA anticodon matches the mRNA
                     codon, GTP hydrolysis results; the inactive EF-Tu-GDP
                     leaves the ribosome and release of GDP is promoted by
                     elongation factor Ts; many prokaryotes have two copies of
                     the gene encoding EF-Tu; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEX2816059.1"
                     /translation="VEMIMPGDNAELTIELITPIAMDQGLRFAIREGGRTVGSGVVSK
                     IIK"
     gene            complement(208..>2324)
                     /locus_tag="VHN39_06685"
     CDS             complement(208..>2324)
                     /locus_tag="VHN39_06685"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEX2816060.1"
                     /translation="PVRPGRADQLHAAGSLRPAVPRLDRRSFLSAAAAVGASAAWGGA
                     RAAPSKLTWTERRDLFPEGVASGDPQGDSVILWTRRPPQDGKPLPRLTIEVAEDQGFQ
                     RVVAAAPAVATVESDWTSRVLVGGLKPSHEYWYRFVGSDGFGSRIGRTTTAPALDDPR
                     EVRFAFVSCQNVNQGAQNAYRRMIFEDEHATPDRRLDFVCHLGDFIYEIVWYPEDRPQ
                     GMYDRRIRDIVRYEHGAKFQDMHLPTTLGDYRAVYRAYLSDPDLQDARARFAFVNMWD
                     NHEFSWRGYQGIEKFGKDTVWGQTRKVAANQAWFEFQPSRAKQAGTLQQFVGPRVVDA
                     PVLKFDEHGLGQEPNNLAAIESLTAYRTLRFGRHVELLLTDQHSYRSEEPSELPGAAD
                     LGSDDFPVLWPEEFTEILDAGRAYNGGHPPEMIDKGVPNFRKDAPPVTMLGAKQKAWF
                     FETLKASKATWKVWGATNGTLTMRTDYQNLPAGLTMPWPGAGYADGGGGDWSGCITER
                     AEVYDFVRDHKITGFATVSGDRHSFWAGLAAKALPPKAFEPVGIAFITGSISAPGLAE
                     SLKHNLKKDQPLRPLFIVDRPDGKPEHTVNMTLRHGVRSGLEYARSGNVAKARALSNP
                     NLAPHLSFVDMGGHGYAVVRASAEAFETEFVAIPRPLERSPGDDGGPLAYRVVHRAAM
                     WKPGERPVLEQRVIEGDPKLSI"
BASE COUNT          337 a          779 c          828 g          380 t
ORIGIN      
        1 gcgtggagat gatcatgccc ggcgacaacg ccgagctgac catcgagctg atcacgccga
       61 tcgccatgga ccagggcctg cgcttcgcca tccgcgaggg cggccgcacg gtgggctccg
      121 gcgtggtctc caagatcatc aagtaaggcg caaagcctcg ctcgaactga acatcaggcc
      181 gtcggggcga cccggcggcc ttttgcttta gatcgacagc ttcggatcgc cctcgatcac
      241 ccgctgctcc agcaccggcc gttcgccggg cttccacatc gccgcgcggt ggacgacgcg
      301 gtaggcgagg gggccgccgt catcgccggg gctgcgctcc agcgggcgcg ggatcgccac
      361 gaactcggtc tcgaaggcct cagccgaggc gcgcacgacc gcatagccgt ggccgcccat
      421 gtccacgaag gagaggtgtg gcgccaggtt ggggttggag agggcgcgag ccttcgccac
      481 gttcccggac ctggcgtatt ccaggcctga cctcaccccg tggcgcaacg tcatgttgac
      541 cgtgtgctcc ggcttaccgt ccggccggtc gacgatgaac agtggccgca gcggctggtc
      601 cttcttgagg ttatgcttca gcgattcggc cagccccggc gcggagatcg agccggtgat
      661 gaaggctatg cctaccggct cgaaggcctt gggcggcagg gcctttgccg ccaggcccgc
      721 ccagaaggag tgccggtcgc cggagaccgt ggcgaagccg gtgatcttgt ggtcgcggac
      781 gaagtcgtag acctcggccc gctcggtgat gcaccccgac cagtcgccgc cgccgccgtc
      841 ggcgtagccc gcgcccggcc agggcatggt caggcccgcc ggcaggttct ggtagtcggt
      901 ccgcatggtg agcgtgccat tggtggcgcc ccagaccttc caggtcgctt tcgaggcctt
      961 cagggtctcg aagaaccagg ccttctgttt cgcgcccagc atggtcaccg gcggcgcgtc
     1021 cttgcggaag ttgggaacgc ccttgtcgat catctccggc ggatggccgc cgttgtaggc
     1081 gcggccggcg tcgaggattt cggtgaactc ctccggccac aagacgggga agtcgtctga
     1141 gcccagatcc gcagcccccg gcagctccga gggctcctcc gaccggtagc tgtgctggtc
     1201 ggtgaggagg agctccacgt ggcggccgaa cctgagcgta cggtaggcgg tcaggctctc
     1261 tatggcggcc aggttgttgg gctcctggcc caggccatgc tcatcgaact tgaggaccgg
     1321 cgcgtcgacc accctggggc cgacgaactg ctgcagggtc ccggcctgct tggctcgtga
     1381 aggctggaat tcgaaccagg cctggttggc ggcgaccttg cgggtctggc cccagaccgt
     1441 gtccttgccg aacttctcga tcccctggta gccgcgccag gagaactcgt ggttgtccca
     1501 catgttgacg aaggcgaagc gcgcgcgcgc gtcctgcagg tcggggtcgg acagataggc
     1561 ccggtagacc gcgcggtagt cgccgagcgt ggtcggcaga tgcatgtcct ggaacttcgc
     1621 cccgtgctcg tagcggacga tgtcgcggat gcgccggtca tacatgccct ggggtcggtc
     1681 ctcggggtac cagacgatct cgtagatgaa gtcgcccagg tggcagacga aatcgagccg
     1741 cctgtcgggg gttgcgtgct cgtcctcgaa gatcatccgc cggtaggcgt tttgagcgcc
     1801 ctggttgacg ttctggcagc tcacgaaggc gaaccgcacc tcgcgcgggt cgtcgagggc
     1861 cggggcggtg gtcgtgcgcc cgatccggct gccgaagccg tctgagccca cgaagcggta
     1921 ccagtactcg tggctgggct tgaggccgcc caccagcacc cggctggtcc agtcgctctc
     1981 gacggtggcg accgctggcg cggcggccac gacccgctgg aagccctggt cctcggccac
     2041 ctcgatcgtc aggcggggca ggggcttgcc gtcctgcggc gggcgacgtg tccacaggat
     2101 cacgctgtcg ccctgtggat cgccggaggc cacgccctcg ggaaagaggt cgcggcgctc
     2161 ggtccatgtc agcttcgagg gcgcagcccg ggcgccgccc caggcggccg acgcccccac
     2221 cgcggcggcg gcgctgagga agctccggcg atccaggcgc ggcacggccg gcctcagcga
     2281 accggccgca tggagctgat ctgcccggcc aggccgaact ggcg
//
LOCUS       DATAJL010000348         6053 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_92843,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000348 DATAJL010000000
VERSION     DATAJL010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6053
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92843"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..445)
                     /locus_tag="VHN39_06690"
     CDS             complement(<1..445)
                     /locus_tag="VHN39_06690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b/b6 domain-containing protein"
                     /protein_id="HEX2816061.1"
                     /translation="MINARQASGLGRSSRYATVAIVLHWLIALAIVAQVSIAWRMGAK
                     TPEGFALIQLHKSIGISILVLSIIRLGWRLTNPPPPEPPGLATWERVLSQIVHWAFYV
                     IMIGMPLTGWLMVSASRTQIPTVLFWTVPLANIPGIDGLAPAAKHT"
     gene            complement(480..1085)
                     /locus_tag="VHN39_06695"
     CDS             complement(480..1085)
                     /locus_tag="VHN39_06695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX2816062.1"
                     /translation="MIRSAVLALALTIGLGGAAAANPSTTDPAKVPAGSYGLDKKHAS
                     LTVKIVHMGFSHYTMRFNGLDGGFTYDPANWQATKVTFAVDPKSVDTNDVAFNKQIAG
                     YFEADKYPAITFAVTGLQGGADGKGTVTGDLTFHGVTKPVTLDVTFDGAGHGITPLGT
                     RLGFSGATQIKRSDFGISNFVLNQFTGDEVDVIFEVEFEKK"
     gene            1257..2999
                     /locus_tag="VHN39_06700"
     CDS             1257..2999
                     /locus_tag="VHN39_06700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX2816063.1"
                     /translation="MSFRAPVRDLAFALSTVGHDALIARAYPDLDADTVGAVLEAAGV
                     FANDVLAPLNRKGDTEGARYENGAVFAAPGFADAYRAFVADGWNSLSADPQYGGQGLS
                     KAMELAVFEMVHAANMAFGLCPMLTQGAIEALALHGTERQKRLILPKLVSGEWPGAMC
                     LTEPQAGSDLAALTSIARPDGNGGYLLSGQKIFITWGDHDAADNICHLVIARTPDAPP
                     GVKGISLFLTTKFAVKDDGSIGPRNDFRAGSIEHKLGIHGSPTCVMLYEGAQAELVGE
                     LGQGLPHMFVMMNAARLQVGVQGVAIAERAFQQALEFSQERKQGRTVWEADGMIYGHP
                     DVRRMLMLMKAKTEAARAICLTTGVLSDLARLADTEGERAAAKARAELLTPIAKAWST
                     DVGVEVASLGVQVHGGMGFIEETGAAQHYRDARIAPIYEGTNGIQAIDLVGRKVRMAE
                     GQVMRNLCAELALTAESLTEIPDLASVGRRLAAGVAALERATDWILANGGAPSLAAAT
                     PYLKLAGDVIGGAMLGRQALAAAGSDDPWLKSKAALARVFAGQVLTQAPGIADGLMDG
                     GDDLEATSAAALAG"
     gene            3071..4939
                     /locus_tag="VHN39_06705"
     CDS             3071..4939
                     /locus_tag="VHN39_06705"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816064.1"
                     /translation="MRKPVWEFARARAAGEAAGTGLSLYQLTLHGMVHPMAFFAVFNA
                     VAAVGFSLLGHPLLGVGAFVGYCAIDVVNQHFIRRWTAEAVGADEARGFRRLAALSAL
                     RISGYILPTLVMALSGRTAALMFFGLQAATLLAVAISTGTLSRRVFWGFASPVFAAVA
                     VLAAYLLTPMSAAGVFLSILSLIVLVALMVEGSNRTIAVLHKAFTDNVAIMRDLQIAR
                     DQAIAERAAAQEAREEARQAGRAKANFLATMSHEIRTPMNGVLGMAQLLQRDETNPVQ
                     RERLAVLMDSGDYLLSILNDILDVSKIDAGRLDILPAPEDLRLFFDRLVGFWGAGADE
                     KGVSLILDIADSVPDFALVDALRLRQVLFNLVGNALKFTENGSVSVIAKATPNGEGAV
                     LLNLVVRDTGIGIGAEHLPNLFTRFTQGDESEVRKFGGTGLGLAIAKQLVELMGGRIW
                     AESELGQGSAFHIKLPLAVADGMASRKPTEAGQEAAPLAPLQVLAVDDNAVNLLVLDQ
                     LLSSFGHEVAKVSSGAEALTIMAERPFDLILLDIQMPGMTGIEVLETLRSADGPNRHA
                     PVVALTADVTSGGRKRYLELGFTEHSPKPIQIEALMESITRAMAAPKAGPQAVQAA"
     gene            complement(4944..>6053)
                     /locus_tag="VHN39_06710"
     CDS             complement(4944..>6053)
                     /locus_tag="VHN39_06710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2816065.1"
                     /translation="PYVDPKFRDRFIELAGAKAILPEWSAKIQEMQDDAEFRAGDEVN
                     LLLRKNYQALGAFRAADRPKALDHFGFASQLVFTTACLSNFGLEQMGEIELALEAARA
                     QNRMMTEFCSVDRRLLATCYVPLVDRARAPEIAREAIALGAKALVIASRHPPGFSPSH
                     VELDPLWALAQEAGLPILFHVGGEEKMAKAYLENGLPFVKDFHGGDENFTSLTFMTIP
                     LSVWQTLSALVIDGVFDRFPRLKWGAIELGASWLPSLMHFLDSGVAAFAKEERLQKLS
                     GKPSDILRRQFRATPYPHEDTRWIIENTAPEMLMFSSDFPHVEGGRNPLKRFNDSLVG
                     VSEDARRRFFRDNFIDLLGAGLDPALHDIPELQAA"
BASE COUNT          964 a         2067 c         2052 g          970 t
ORIGIN      
        1 ccgtgtgctt ggcggccggc gccagaccat cgatcccggg gatattcgcg agcgggaccg
       61 tccagaacag caccgtcggg atctgtgtcc tgctggccga gaccatcagc cagccggtca
      121 gcggcatacc gatcatgatc acatagaagg cccagtggac gatctgcgac agcacccgtt
      181 cccaggtcgc caggcccggg ggctccggcg ggggcgggtt ggtcaggcgc cagcccagcc
      241 ggatgatact cagcacgagg atcgaaatgc cgatcgactt gtgcagctgg atgagggcga
      301 agccctcggg ggtcttggcg cccatccgcc aggcgatgga gacctgggcc acgatggcca
      361 gcgcgatcag ccagtgcagg acgatcgcca cggtggcgta gcgactggag cggcccaggc
      421 ctgaggcctg gcgggcgttg atcattgagg gcgttcctgc tgacgactct gtggccgttc
      481 tacttctttt cgaactcgac ttcgaagatc acatcaacct cgtcgccggt gaactggttc
      541 aggacgaaat tgctgatccc gaaatccgac cgcttgatct gggtcgcccc ggagaagccc
      601 agtcgggtgc ccaagggcgt gatcccatgg ccggcgccgt cgaaggtgac gtccagcgtc
      661 accggcttgg tcaccccgtg gaaggtcagg tcgccggtca ccgtcccctt gccgtcggcg
      721 ccgccctgca gcccggtgac ggcgaacgtg atggccgggt atttgtcggc ctcgaagtag
      781 ccggcgatct gcttgttgaa cgcgacgtca ttggtgtcga cggatttggg atcgacggcg
      841 aaggtgacct tcgtcgcctg ccagttggcc gggtcgtagg tgaagccgcc gtccaggccg
      901 ttgaagcgca tcgtgtagtg cgagaagccc atgtggacga tcttcaccgt caggctcgcg
      961 tgcttcttgt cgagcccata gctcccggcc ggcaccttgg ccgggtcggt ggtcgagggg
     1021 ttggccgcag ccgcgccccc gaggccgatt gtcagggcga gagccaggac tgcgctgcgg
     1081 atcatcgtgt cgtctctcca gggtccggcg aagggcgtcg gccgaagatg atgggcgcga
     1141 aacctagccg aaagaacggc gccgcggatt tacggcgtat ggaccgcgtc gtcggtggct
     1201 ttgccgctgt caggccatag cctaagacat ctgcgagcct gatccggagc tagtccatgt
     1261 ccttccgcgc gcccgtccgg gacctcgcct tcgcgctctc caccgtcggc cacgacgcac
     1321 tcatcgcccg cgcctacccc gacctcgacg ccgacacggt gggcgccgtg ctggaggccg
     1381 ccggggtttt cgccaatgac gtgctggcgc ccttgaaccg caagggcgac accgaaggcg
     1441 cgcgctacga gaatggcgcg gtgttcgcgg ccccgggctt cgccgacgcc tacagggcgt
     1501 tcgtcgccga cggctggaat tcgctctccg ccgatccgca gtacggcggc cagggcctgt
     1561 cgaaggccat ggagctggcg gtcttcgaga tggtccacgc cgccaacatg gcctttggcc
     1621 tctgccccat gttgacccag ggcgccatcg aggcgctcgc cctgcatggc acggagcgtc
     1681 agaagcggct catcctgccc aagctggtgt ccggcgagtg gcccggcgcc atgtgcctca
     1741 ctgaaccaca ggcggggtcc gatctcgccg ccctcacctc catcgcgcgc ccggacggaa
     1801 acggcggcta tctgctgtcg ggccagaaga tcttcatcac ctggggcgac cacgacgcgg
     1861 ccgacaacat ctgccacctg gtcatcgccc gcacccccga cgcgccgccc ggggtgaagg
     1921 gcatcagtct cttcctgacc accaaatttg cggtgaagga cgacggctcg atcggcccgc
     1981 gtaacgattt ccgcgcgggc tccatcgagc acaagctggg catccacggc tcgcccacct
     2041 gcgtcatgct ctacgaaggg gcccaggccg aactggtggg cgagctcggc cagggcctgc
     2101 cgcatatgtt cgtgatgatg aacgccgcgc gcctgcaggt gggggtgcag ggcgtggcca
     2161 tcgccgagcg ggccttccag caggcgttgg aattcagcca ggagcgcaag cagggccgca
     2221 ccgtctggga ggccgacggc atgatctacg gccacccgga cgtgcgccgc atgctgatgc
     2281 tgatgaaggc caagaccgag gccgcccgcg ccatctgcct gaccaccggc gtgctctccg
     2341 acctggcccg cctggccgac accgagggcg aacgcgccgc cgccaaggcc cgcgccgaac
     2401 tgctgacccc catcgccaag gcctggtcga ccgacgtcgg cgtcgaggtt gcgtccctgg
     2461 gcgtccaggt gcacggcggt atgggcttca tcgaggaaac cggcgccgcc cagcactacc
     2521 gcgacgcccg catcgccccg atctacgagg gcaccaacgg catccaggcc atcgacctgg
     2581 tgggccgcaa ggtgcgcatg gccgagggcc aggtgatgcg gaacctctgc gccgagctgg
     2641 cgctgaccgc cgagagcctg accgagatcc cggacctggc gtctgtcggc cgcaggctgg
     2701 ccgccggcgt cgcagccctg gagcgggcca ccgactggat cctggccaac ggcggcgcgc
     2761 ccagcctggc cgcagcgacg ccctatctga agctcgccgg cgacgtgatc ggcggcgcca
     2821 tgctgggccg gcaggcgctc gccgcggcgg gatcggacga cccgtggctg aagagcaagg
     2881 cggcgctggc ccgggtcttc gcgggccagg tgctgaccca ggcgccgggt atcgccgacg
     2941 gcctgatgga cgggggcgac gacctggagg ccaccagcgc cgcggccctg gccggctagg
     3001 taaaaatacg gagggattct ccgaagtttt acctttgggg ccaatcatgg tcccggagtt
     3061 tgggggcccg atgagaaagc cggtctggga attcgcgcgc gcacgcgccg ccggcgaggc
     3121 ggcgggcacc ggcctgagcc tctatcagct gacgctgcac ggcatggttc acccgatggc
     3181 ctttttcgcg gtgttcaacg ccgtcgccgc cgtcggattc tcgttgctgg gccacccgct
     3241 gctcggcgtc ggcgccttcg tcggctattg cgccatcgac gtcgtgaacc agcacttcat
     3301 ccgccgctgg acggccgagg cggtcggcgc ggacgaggcc cggggctttc gccgcctcgc
     3361 ggcgctgagc gcgcttcgca tcagcggcta catcctcccg accctggtca tggccctgag
     3421 cggccgcacc gccgccctga tgttcttcgg cctgcaggcc gccaccctgc tggccgtggc
     3481 catctccacg ggcaccctgt cccgccgcgt cttctggggc ttcgcaagtc cggtgttcgc
     3541 ggcggtcgca gtcctggcgg cctatctcct gacgccgatg tccgccgctg gcgtattcct
     3601 cagcattctc agcctcatcg tgctggtcgc cctgatggtc gagggctcca accgcaccat
     3661 cgccgtcctg cacaaggcct tcaccgacaa cgtggcgatc atgcgcgacc tgcagatcgc
     3721 ccgcgaccag gcgatcgccg agcgggcggc ggcccaggag gcccgcgagg aggcccgtca
     3781 ggccggcagg gccaaggcca acttcctggc caccatgagc cacgagatcc gcacgccgat
     3841 gaacggggtg ctgggcatgg ctcaactcct ccagcgcgac gagaccaatc ccgtgcagcg
     3901 cgagcggctc gcggtcctga tggactccgg ggactatctg ctgtcgatcc tcaacgacat
     3961 cctcgacgtc tccaagatcg acgccgggcg cctggacatc ctgccggcgc cggaggacct
     4021 gcgcctcttc ttcgaccggc tggtcggctt ctggggcgca ggcgcggacg aaaagggcgt
     4081 gtccctgatc ctggacatcg ccgacagcgt gccggacttc gcgctcgtcg acgcccttcg
     4141 cctgcgccag gtgctgttca acctggtggg caatgcgctg aagttcacgg aaaacggatc
     4201 ggtgtcggtg atcgccaagg ccacgcccaa tggcgaaggc gcggtgctgc tgaacctggt
     4261 cgtccgtgac actggcatcg gcatcggcgc cgaacacctg cccaacctct tcacccgctt
     4321 cacccagggc gacgagtccg aggtgcgcaa gttcggtggc acgggcctgg gcctggccat
     4381 cgccaagcaa ctggtcgagc tgatgggcgg ccggatctgg gcggagagcg agctcggcca
     4441 gggctcggcc ttccatatca agctgccgct agcggtcgct gacggcatgg cctcgcgcaa
     4501 gcccaccgag gccggccagg aggccgcgcc gctcgccccc ctgcaggtgc tggcggtgga
     4561 cgacaacgcg gtgaacctgc tggtgctcga ccagctgctc tccagcttcg gtcatgaggt
     4621 cgccaaggtg tcgagcggcg cagaggcgct gaccatcatg gccgagcgcc ccttcgacct
     4681 gatcctcctg gacatccaga tgccgggcat gaccggcatc gaggtcttgg agacgctgcg
     4741 gagcgccgat ggccccaacc gccacgcgcc ggtcgtggcg ctcaccgccg acgtcacctc
     4801 gggagggcgc aagcgctacc tggaactcgg cttcaccgag catagtccca agcctatcca
     4861 gatcgaggcg ctgatggagt ccatcacccg cgccatggcc gcaccgaaag cgggtcctca
     4921 ggccgttcag gccgcctgaa gtcctaagcc gcctgaagct ccggaatatc gtgcagggcc
     4981 ggatcgagcc ctgcgcccag caggtcgatg aaattgtcgc ggaagaagcg gcgcctggcg
     5041 tcctccgaca cgcccacaag gctatcgttg aagcgcttca gcggattgcg cccaccctcc
     5101 acgtgcggga agtccgagga gaacatcagc atctcgggcg cggtgttctc gatgatccag
     5161 cgggtgtcct cgtgcggata gggcgtggcg cggaactggc gacgcaggat atcgctgggc
     5221 ttgccggaaa gcttctgcag ccgctcttcc ttggcgaagg ccgcgacccc ggaatcgagg
     5281 aaatgcatca ggctcggcag ccaggaggcg cccagctcga tggcgcccca cttcaggcgt
     5341 gggaagcggt cgaagacgcc gtcgatcacc agggccgaga gcgtctgcca gacgctgagc
     5401 ggaatggtca tgaaggtgag cgaagtgaag ttctcgtcgc cgccgtggaa gtccttcacg
     5461 aagggcagac cgttttccag ataggccttg gccatcttct cctcgccgcc cacgtggaag
     5521 aggatcggca ggccggcctc ctgggccagg gcccagagcg gatcgagctc cacgtggctg
     5581 ggcgagaagc ccggcgggtg gcgggacgcg atcaccagcg ccttggcgcc cagcgcgatg
     5641 gcttcacgcg cgatctcggg cgcccgggcg cgatcgacca gcggcacgta gcaggtggcc
     5701 agcagccggc ggtccaccga gcagaactcg gtcatcatgc ggttctgggc gcgggcggcc
     5761 tcaagcgcga gctcgatttc ccccatctgc tccagcccga aattggacag gcatgcggtg
     5821 gtgaacacca gctggctggc gaagccgaag tggtccagcg ccttgggccg atcggcggcc
     5881 ctgaaggccc ctagggcctg atagtttttc cgcagcagca ggttcacctc gtcgccggcg
     5941 cggaactcgg cgtcgtcctg catttcctga atcttcgccg accactccgg aaggatcgcc
     6001 ttggcgccgg ccagctcgat gaagcggtcg cggaatttcg ggtcgacata ggg
//
LOCUS       DATAJL010000349         3625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105778,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000349 DATAJL010000000
VERSION     DATAJL010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3625
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105778"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1075
                     /locus_tag="VHN39_06715"
     CDS             <1..1075
                     /locus_tag="VHN39_06715"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2816066.1"
                     /translation="FQKFEQADSSITRRFGGTGLGLSICRQLVSLMGGQIGIADRDGG
                     GSVFWFEITLPRGLALPARASRRATLEGVRVLVIDDLAINRDIFRAELESEGMHVDEA
                     DGGEAGLAAFAQAQARGEDYEVVLLDQMMPNMAGQEVAARLRANPAGRQPLIILNSSM
                     GMPLSAEERERARLDAVLTKPVRRQVLMDSLAELLGGPAAIDDPAAQDAAPEIVACNA
                     RVLLAEDNAINTMLAVTVLEAIGCVVDCVVNGVEAVAAAKTGAYDLILMDVHMPEMDG
                     LEATRLIRAFGGAAGQTPIVAMTANAAVKDQEECAAAGMNDFTSKPIDIDKFAELVTR
                     WVAGDPAEDGAAPADPAADSQAA"
     gene            complement(1316..3094)
                     /locus_tag="VHN39_06720"
     CDS             complement(1316..3094)
                     /locus_tag="VHN39_06720"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816067.1"
                     /translation="MQRSILRETLERFYHRAYGDYRALRLVSIASIAAMTAYTGVWSI
                     ACAVLWASAYAGSEIWLVIWWRRIQPRLAVGGPAEIKRLQSELIGICAISCAICAVPG
                     FLTPLSGHDNKVMGVILSAAILLVAAAEHSLRKDMFLLTAPPAAAALIWNLYSLGDGL
                     NGWMFGALGLCYVGNALALQQSNAKVFLDLLRLRADAEAANVAKSDFLATVSHEIRTP
                     LNGVLGMAQLMARSDLTAEQRGQLNVISDSGQALLVVLNGILDLSKIESGKLELEARA
                     FDLEQTVEAAAAAFAPLAAEKGLMFSVEVAPSLRGSWQGDTARIGQVMSNLLSNALKF
                     TAVGAIRIGVEPSADSVAFSVADTGIGIPADKLGAIFEKFTQADSSTTRRFGGTGLGL
                     AICERFVALMGGQMTVESKVGVGSTFSFVLPLRRDIAADQDEVSAPEATDYARPIRIL
                     AAEDNSTNRLVLSALLETLGVDLTVVDDGEEAVEAFAAARFDVVLMDMQMPRMDGVAA
                     TAAIRGRERLDGRSRTPIIALTANVMPHQIERYRAAGMDAHVAKPVELPVLVAAINDA
                     LASHVDPAKDGLHGGAEQVDRQAAEA"
BASE COUNT          640 a         1176 c         1202 g          607 t
ORIGIN      
        1 gttccagaag ttcgagcagg ccgacagttc gatcacccga aggttcggcg gcaccggcct
       61 tgggctgtcg atctgccgcc agctggtgag cttgatgggc ggccagatcg gcatcgccga
      121 tcgcgacggc ggcggcagcg tcttctggtt cgaaattacc ctgccccgcg gattggcgct
      181 gccggcgcgc gcaagccgca gggccacgct cgaaggcgtc cgcgtgctgg tgatcgacga
      241 cctggcgatc aatcgggaca tcttccgggc cgaactggaa tcggaaggca tgcacgtcga
      301 cgaggccgat ggcggcgaag ccgggttggc ggcgttcgcg caggcccagg cgcgcggcga
      361 ggactacgag gtcgtcctac ttgaccagat gatgccgaac atggccggcc aggaagtcgc
      421 cgcgcggctg cgggccaacc cggcgggacg ccagccgctg atcatcttga attcgtccat
      481 gggcatgccg ctgtcggccg aggagcgcga gcgcgcgcgg ctggacgcgg tcctgaccaa
      541 gccggtgcgg cgccaggtcc tcatggacag tctcgcggag ctattgggcg gaccggcggc
      601 catcgacgat ccggccgcgc aggacgcggc ccccgagatc gtcgcctgca acgcccgcgt
      661 gctgctcgcc gaggacaatg caatcaacac catgctggcg gtcaccgtcc tggaggcgat
      721 cggctgcgtc gtcgattgtg tggtgaacgg cgtggaagcc gtagccgccg ccaagaccgg
      781 cgcctacgac ctgatcctga tggatgtcca catgccggag atggacggcc ttgaggccac
      841 ccggctgatc cgcgccttcg gcggcgccgc gggacagacg ccgatcgtcg ccatgaccgc
      901 caacgccgcc gtcaaggatc aggaagagtg cgccgccgcg ggcatgaacg acttcacctc
      961 caaacctatc gacatcgaca agttcgcaga gctggtgacg cgctgggtcg cgggcgatcc
     1021 ggcagaagac ggcgccgccc ccgccgatcc ggcggcggac tcgcaggcgg cctgagcggc
     1081 cgcctccccg acatatcgtg cccgcgtaac taactctcgc ttggtggcct aagacctgaa
     1141 agcggaccta tccaatgtcc gctatgggtc gaaagcggtc taagaccagg cgcccgaaac
     1201 cggaccttcc ggtggtgcgc cagacagcgg actccgcctg ctttggggga aagcggacgt
     1261 cggcggcgat ccggccgaac gaccgcttct gtggccgacc gttggaaggc ctggattacg
     1321 cctcggctgc ttgacggtcg acctgctcgg cgccgccatg caggccgtct tttgcggggt
     1381 cgacgtggct agccagcgca tcgttgatgg cggcgacaag gacgggcaac tcgaccggct
     1441 tggcgacatg cgcgtccatg cccgcggcgc ggtatcgctc gatctggtgc ggcatgacat
     1501 tcgccgtcag cgcgatgatc ggcgttcgcg atcggccgtc caggcgctcg cgccctcgaa
     1561 tggcggcggt ggccgccacc ccgtccatcc gcggcatttg catatccatc agcacaacgt
     1621 cgaagcgcgc cgccgcgaag gcctctacag cctcctcgcc atcgtcgacc acggttagat
     1681 cgacgcccaa cgtctccagg agagcgctca gaaccaaccg gttggtcgaa ttgtcctcgg
     1741 ccgcgagaat cctgatcgga cgcgcgtagt cggtggcctc cggcgcgctg acctcgtctt
     1801 ggtcggcggc aatatcgcgc cgcagcggca ggacgaacga gaaggtcgag ccgaccccta
     1861 ccttgctctc gactgtcatc tgtccgccca ttagcgcgac gaagcgctcg cagatcgcga
     1921 ggccaagacc ggtgccgccg aaccggcgag tggtcgagga gtccgcctgg gtgaactttt
     1981 cgaagatcgc gcccagcttg tccgcaggaa tgccgatccc ggtgtcggcg acactgaagg
     2041 ccacgctatc tgcgctgggc tcgaccccga tccgaatagc gcccacggcg gtgaatttga
     2101 gcgcgtttga caggaggttg gacatcacct ggccgatccg agccgtgtca ccctgccaag
     2161 atcctcgcag cgacggcgcg acctcgacgc tgaacataag ccctttctcg gcagcgaggg
     2221 gggcgaacgc cgcagctgcc gcctccaccg tctgttcgag atcgaaagcg cgcgcctcca
     2281 gttcgagctt gccggactcg atcttcgaga ggtcgaggat gccgttgagc accacgagca
     2341 gagcctgacc agagtcagaa atcacgttca gctgtccgcg ttgctccgcc gtcaggtcgc
     2401 tgcgcgccat cagctgcgcc atgccaagca cgccgttgag gggcgtgcgg atctcgtgac
     2461 tgaccgtcgc caggaagtcg ctcttggcga cgttggcggc ttcggcatcg gcgcgtaggc
     2521 gcagaagatc gaggaatacc tttgcgttgg attgctgcag ggccagcgca ttgccgacgt
     2581 agcaaagacc aagtgcgccg aacatccacc cgttcaagcc gtcgcccagg ctatagaggt
     2641 tccagattag cgcggccgcc gcgggcggcg cggttagcag gaacatgtcc ttgcgcaagc
     2701 tatgctcggc ggcggcgacc agcagtatcg ccgcgctgag gatcacaccc atgaccttgt
     2761 tgtcgtgccc cgaaagggga gtcaggaagc cggggaccgc gcagatggcg caggagatgg
     2821 cgcagatccc gatcagctcc gattgcagcc gtttgatttc cgccgggcca ccgaccgcca
     2881 gtcgcggttg aatccttcgc caccagatca caagccagat ttcgctgccg gcataggcgg
     2941 acgcccatag caccgcgcag gcgatcgacc agacgcccgt gtaggccgtc atcgccgcaa
     3001 tagaggcgat gctgacgagc cgcagcgcac ggtagtcgcc gtaggctcga tggtagaatc
     3061 gttcgagcgt ctcgcgaagt atcgaccttt gcattgcggc aagacgtaga gcgtcgctgc
     3121 ttaaggtcgt ctgagctgac gtggtcagcg gcgatcggcc gcgggcgccg gaggccctgc
     3181 gagagtctcc tttgggtcga aagcggacat tggctccagg cccgagagcg gactcttgga
     3241 ttctatccgg ggtgtcgaaa gggacctctg ctcgcacttc ggcggtgctg tcaggttagt
     3301 ggaaagctac gcgttcacgc cactcgatag ccgcggcgtc ggagaatgga ctgctgaaat
     3361 tcttcacgaa atcggacgac atagtccgcc ctagcgctgg gcgactccga tccggtcgtt
     3421 aacctgacaa cgcccttcga acaggcgtta tcccgggaag ggtctagcct tgaggaggcc
     3481 ggccaagtgg gccgcattct tggccaccat cttggatgtc tcggccactt tcctgggcgt
     3541 cgacttgagg tccttgaagt cgatcgagcc catggcttcg ccgacccaat agcaggcggc
     3601 cacagccggg atcgtccagc cggtg
//
LOCUS       DATAJL010000350         1824 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_31941,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000350 DATAJL010000000
VERSION     DATAJL010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_31941"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(334..>1824)
                     /gene="mdoH"
                     /locus_tag="VHN39_06725"
     CDS             complement(334..>1824)
                     /gene="mdoH"
                     /locus_tag="VHN39_06725"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008262960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HEX2816068.1"
                     /translation="LYNEDARAPFARLAALDASLARLGASAAFDIFVLSDSTSEDAAL
                     AERLAFALLRPHAHSRIFLRRRLDNVERKAGNISEWVRRFGGAYDFMVVLDADSTMAG
                     ETLLRLVDAMERNPGVGLIQTAPTITGATTLFARMSQFGVRMYGRVAAAGLAWWAGSE
                     ASYWGHNAILRTEAFAASAGLPILPGAKPFGGHVLSHDVVEAALLRRAGWAVHVTAAL
                     DGSCEETPPTILDFIQRDSRWCQGNLQHLRLIGAKGLHPLSRAQLAMGCMAYLSSPLW
                     FVGLVIGLTLQLRYPIDWASFWYFLKPEFSPFMLTSLLSGVLLIGPKLMGCLLVLSRP
                     GERRAFGGAGAVLKSMTLEILLSIALAPILMVANTQAVRRTLAGHDVGWRPQRRESGG
                     LAWRDACRAMAWQMFTGAAFVIALCFRPDLVVCFAPILLPLLLAPVLATLSARRGTGE
                     AFARAGFLTTPDDHGMSATPVVFHAAARPVQTVLGPQAQDQVSTVG"
BASE COUNT          318 a          634 c          654 g          218 t
ORIGIN      
        1 gaagaacggc gcgcagaggg ccgcgagcag ggccagcacc accacggcga aggcgaaggc
       61 ccgagcgggc gacggcgcgg acctgggcgc gatgtccggc ggcaaggtct cctggctcgt
      121 caaggacgcg cccctccctg cccgcatcta cgctgcgatc ccaccgtgaa cgtcatccca
      181 tgaccacgcc tgcacagccc tcgcggcgga ccctttcggc gcccgccgtc ccaccggccg
      241 atcatggact gttctggcgc cagatgtcgc tacctgtcta acagggttcg ccaacagcgg
      301 tgacgggctc ggcgggcgcg cgggcgcggg ccttcagccg accgtggaaa cctgatcctg
      361 agcctgcgga ccgaggaccg tctggaccgg cctcgccgcc gcatggaaga caacgggcgt
      421 ggcgctcatg ccgtgatcgt ccggggtcgt caggaagccg gctcgcgcga acgcctcgcc
      481 ggtcccgcgg cgggcgctca gcgtcgccag gacgggggcc aggagcagcg gcaggaggat
      541 gggggcgaaa cagaccacga ggtcgggccg gaagcagagc gcgatgacaa aggcggcgcc
      601 ggtgaacatc tgccaggcca tcgcccggca cgcgtcgcgc cacgccaggc cccccgactc
      661 gcgccgttgc ggccgccagc ccacgtcatg gccggcaaga gtccggcgca ccgcctgggt
      721 gttggccacc atcaggatgg gcgcgagcgc gatcgacagc aggatctcca gcgtcatgct
      781 cttcagcacc gcgcccgcgc cgccgaacgc ccgccgctcg cccggacggc tcagcaccaa
      841 caggcagccc atcagcttcg gcccgatcaa gaggacgccg gacagcagcg atgtcagcat
      901 gaagggcgag aactcgggct tcaggaaata ccagaaggag gcccagtcga tgggatagcg
      961 caattgcagg gtgaggccga tgaccaggcc gacgaaccag agcggcgagg acaggtaggc
     1021 catgcagccc atcgccagct gcgcgcggct caagggatgc agccccttgg cgccgatgag
     1081 gcgaaggtgc tgcaggttgc cctgacacca gcggctatcg cgctggatga agtccaggat
     1141 ggtcggtggg gtctcttcgc agctcccgtc gagggcggcc gtgacgtgaa ccgcccagcc
     1201 ggcgcggcgc agcagggcgg cctccaccac gtcatggctg agcacatggc cgccgaaggg
     1261 cttggccccg ggcaggatcg gcagacccgc gctggcggcg aaggcctcgg tgcgcaggat
     1321 ggcgttgtgg ccccagtagc tggcctccga gcccgcccac caggccaggc ccgcggcggc
     1381 gacgcggcca tacatgcgca cgccgaactg cgacatccgc gcgaagaggg tggtcgcgcc
     1441 ggtgatggtc ggcgcggtct ggatgaggcc gacgcccggg ttacgttcca tggcgtccac
     1501 cagccgaagc agggtctcgc cggccatggt gctgtcggcg tcaagcacca ccatgaagtc
     1561 ataggcgccg ccgaaccggc ggacccactc ggagatgttg ccggccttgc gctcgacgtt
     1621 gtccaggcgg cggcgcagga aaatccggct gtgcgcatgc ggccgaagga gcgcaaacgc
     1681 cagccgctcg gccaacgccg cgtcttccga ggtggagtcg ctcaggacga agatgtcgaa
     1741 cgccgccgag gcgcccaggc gcgccagcga cgcgtcaagc gcggccaacc gcgcaaaggg
     1801 cgccctggcg tcctcgttat agag
//
LOCUS       DATAJL010000351         3850 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105796,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000351 DATAJL010000000
VERSION     DATAJL010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3850
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105796"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            168..704
                     /locus_tag="VHN39_06730"
     CDS             168..704
                     /locus_tag="VHN39_06730"
                     /inference="COORDINATES: protein motif:HMM:NF024952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HEX2816069.1"
                     /translation="MESLEVIARPHFDKADLAWLTDIRSRRAGSRGAPYFTLVFATLD
                     ISPAAFTKAIRAYAKDIHPIRFRLRSALVVPEQIVGRFHVFLIPDEGFGAILRLHDAL
                     HAGLVKPALRQDSPYLPHITVATTADYATARSLAFALNNDVIDIHGHIDALQVECRTS
                     DGIRQVAEVPLSKAGWFG"
     gene            complement(828..1829)
                     /gene="cobS"
                     /locus_tag="VHN39_06735"
     CDS             complement(828..1829)
                     /gene="cobS"
                     /locus_tag="VHN39_06735"
                     /EC_number="6.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051116 - cobaltochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobS"
                     /protein_id="HEX2816070.1"
                     /translation="MTAFDTADDKLLTLVPDHEVNTRDLFGVDFDAKAPAFTTRDPHV
                     PDLDEAYVFDPETTRALVAGFAHNRRVMVQGFHGTGKSTHIEQVAARLHWPLVRVNLD
                     SHVSRIDLVGKDAIVLKDGKQITEFREGMLPWAIQRPIALVFDEYDAGRPDVMFVIQR
                     VLEASGKLTLLDQNRVIRPNPWFRLFATTNTIGLGDTTGLYHGTQQINQGQMDRWSIV
                     TTLNYLAHDVEAEIVLAKAPTYDTADGKRTIAAMVRVADMTRNAFMNGDISTVMSPRT
                     VITWAQNADIFDGDIALAFRMTFLNKCDELERGTVAEFFQRAFGTDLPESTARVRVA"
     gene            1920..2792
                     /locus_tag="VHN39_06740"
     CDS             1920..2792
                     /locus_tag="VHN39_06740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEX2816071.1"
                     /translation="MLKDAESAYRTITVQPQPTGFGAEITGLDLTRPLPAPVLAEVKA
                     AWARHGVVAFPDQLMDLEAQEAFTRTMGGFGHDPFIKPMPGHPNVLELRREPDEKAMN
                     FGAGWHSDWSFQAAPPAATILHSKVVPPVGGDTLFVDACRAYEALSPTMQRMLAPLQA
                     VHSARQSYGTKGVFSKETEKRTLQIIVSEEADGSLTHPLVRTHPVTGRKALFVSPVYT
                     VGIADLTPEEAKAILGFLFAHLTQDEFIYRHRWREQMLLMWDNRCTMHFAEGGYDGHL
                     RLMHRTTVAGDVPV"
     gene            complement(2789..3283)
                     /locus_tag="VHN39_06745"
     CDS             complement(2789..3283)
                     /locus_tag="VHN39_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816072.1"
                     /translation="MTTQHTPHPRIAERAKAGPHTTKSEHVGFNGRVAILITNSVGTM
                     WCAYAFAILALISLPEAIKGGTAPLIAWIAQTFLQLVLLSVIMVGQKVSAAASDKQAL
                     QTYRDAEALLKIQDDVHRLIKLNNDLTAQIHAATCAVPAAPAKAAAAPKKPAAKSKAA
                     PRKR"
     gene            complement(3280..>3850)
                     /locus_tag="VHN39_06750"
     CDS             complement(3280..>3850)
                     /locus_tag="VHN39_06750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2816073.1"
                     /translation="GRPVAVHAASDAGIHNAVEAGVDTIEHGYGASEATFRLMKAKGV
                     AYVPTLTAPEATSIYFQHYVPGTNPPTSAMQAAERAFRLALSVGVTIGSGSDVGVFPH
                     GESWRELGWMVKDGMTPVQALTAATETNARILGRADRLGEVKPGYLADLVAVAGDPTK
                     DIAVLKDVRFVMKGGKVYRLPTTPQGEHP"
BASE COUNT          578 a         1307 c         1314 g          651 t
ORIGIN      
        1 ccggtttgcg ctcagcctcg gcgagcccaa gcccgcgccg gcgcgcgagc ctcaggtcgc
       61 cgacacaggt taagtggcca cgctggcctc ccccttccgg cgcatcgcgg ttttctgaca
      121 accttctagg gatactgtcg ccgcagtccg caccgcgggg agacccaatg gaatcgctcg
      181 aagtgatcgc ccggccgcac ttcgacaagg ccgatctcgc ctggctcacc gacatccgtt
      241 cgcggcgcgc cggcagccgg ggcgcgccct atttcaccct ggtcttcgcc accctcgaca
      301 taagtcccgc cgccttcacc aaggcgatcc gcgcctatgc caaggacatc caccccatcc
      361 gctttcgcct gcgctcggcc ctggtcgtac cggagcagat cgtgggccgt ttccacgtct
      421 tcctgatccc ggacgaaggc ttcggagcga tcctgaggtt gcacgacgcc ttgcacgcgg
      481 ggctcgtcaa accggccctg cgccaggaca gtccctatct gccccatatc accgtggcca
      541 cgacggcgga ctacgccacc gcccgcagcc tggccttcgc cctgaacaac gacgtcatcg
      601 acatccacgg ccacatcgac gccctgcagg tggaatgccg cacgagcgac ggcatcaggc
      661 aggtggcgga ggtcccgctg tcgaaagccg gctggttcgg gtgagccgac aaagttgctc
      721 cccatcgggg gagctgtcag cgaagctgac tgagggggtc ctcctaggtc tgagcggaag
      781 ccccctccgg cgcttcgcgc cacctccccc aagaggggag gaatcgctta ggccacccgc
      841 acccgcgccg tgctctccgg caggtcggtg ccaaacgccc gctggaagaa ctcggccacg
      901 gtgccgcgct ccagctcgtc gcacttgttc aggaaggtca tgcggaaggc gagcgcgatg
      961 tcgccgtcga agatgtcggc gttctgggcc caggtgatca cggtccgggg actcatgacc
     1021 gtggagatgt cgccgttcat gaaggcgttg cgggtcatgt cggcgacccg gaccatggcg
     1081 gcgatggtcc gcttgccgtc ggcggtgtcg taggtcggcg ccttggccag cacgatctcg
     1141 gcctccacgt catgggccag atagttcagc gtggtgacga tcgaccagcg gtccatctgc
     1201 ccctgattga tctgctgggt gccgtgatag aggccggtgg tgtcgccgag gccgatggtg
     1261 ttggtggtgg cgaagaggcg gaaccagggg ttcgggcgga tcacccgatt ctggtcgagc
     1321 agcgtcagct tgccggacgc ctccagcacc cgctggatca cgaacatcac gtccgggcgg
     1381 ccggcgtcgt attcgtcgaa caccagggcg atcggccgct ggatcgccca gggcagcatg
     1441 ccctcgcgga attcggtgat ctgcttgccg tctttcagga cgatggcgtc cttgccgacg
     1501 aggtcgatgc gggagacgtg gctgtcgagg ttcacccgca ccagcggcca gtgcaggcgc
     1561 gcggccacct gctcgatgtg cgtcgacttg ccggtgccgt ggaagccctg gaccatgacg
     1621 cggcggttgt gcgcgaagcc ggcgaccagc gcccgcgtgg tctcggggtc gaacacatag
     1681 gcctcgtcca ggtccggcac gtgcgggtcg cgcgtggtga aggccggggc cttggcgtcg
     1741 aaatccacgc cgaacaggtc gcgcgtgttg acctcgtgat cgggcacgag cgtcaggagc
     1801 ttgtcgtctg cggtgtcgaa agcggtcatg gcggggcttc gattacaggc ttgccggacc
     1861 ggaagcaaac aggtgtttgt agtcgcgcgg ccttcgcgcc gcgcctcaag aggttcgcca
     1921 tgctgaagga cgccgagagc gcctatcgca ccattaccgt gcagccgcag cccacgggct
     1981 tcggcgcgga gatcaccggg ctcgacctga cacggccctt gccggcgccg gtgctggccg
     2041 aggtgaaggc cgcctgggcg cgccacggcg tcgtcgcctt ccccgaccag ctcatggacc
     2101 tggaggcgca ggaggccttt acccggacca tgggcggctt cggccacgac cctttcatca
     2161 agccgatgcc cggccacccc aacgtcctgg aactgcgccg cgagcccgat gagaaggcga
     2221 tgaatttcgg ggccggctgg cactccgact ggagtttcca ggccgcgccg ccggccgcca
     2281 cgatcctgca ttccaaggtg gtcccgccgg tgggcggcga caccctcttc gtcgatgcgt
     2341 gccgggccta cgaagcgctc tcgcccacga tgcagcggat gctggcgccc ctgcaggccg
     2401 tccattcggc gcggcagtcc tatggcacca agggcgtctt ctcgaaggaa accgagaagc
     2461 ggacgctgca gatcatcgtc tcggaggagg ccgacggctc gctgacccat cccctggtcc
     2521 gcacccatcc ggtcaccggc cgaaaggcgc tcttcgtctc gccggtctac accgtgggca
     2581 tcgccgacct gacgccggag gaggccaagg cgatcctggg cttcctcttc gcccacctga
     2641 cccaggacga gttcatctac cgccacaggt ggcgcgagca gatgctgctc atgtgggaca
     2701 accgctgcac catgcacttc gccgagggcg gctacgacgg ccacctgcgc ctgatgcacc
     2761 gcacgaccgt ggccggcgac gtcccggtct agcgcttgcg cggcgccgcc ttcgacttgg
     2821 cggcgggctt cttgggcgca gcggccgcct tcgccggcgc ggcgggaacc gcgcaggtcg
     2881 cggcgtggat ctgggccgtc aggtcgttgt tgagcttgat caggcggtgg acgtcgtcct
     2941 ggatcttcag cagggcctcg gcgtcccggt aggtctgcag ggcctgtttg tcggaggccg
     3001 ccgccgagac cttctgcccg accatgatca ctgacaagag gaccagctgc aggaaggtct
     3061 gggcgatcca ggcgatcagc ggcgcggtgc cgcccttgat ggcctccggc aggctgatca
     3121 acgccaggat tgcgaaggcg taggcgcacc acatggtgcc gaccgagttg gtgatcagga
     3181 tcgcgacgcg gccgttgaag ccgacgtgct cggacttggt cgtatgcggg ccggccttgg
     3241 cccgctcggc gatcctggga tggggtgtgt gctgggtcgt catgggtgct ctccctgggg
     3301 tgtggtcggc aggcggtaga ccttgccgcc tttcatcacg aaacgaacgt ccttgaggac
     3361 ggcgatgtct ttggtcgggt cgccggcgac ggccaccaga tcggcgaggt agcccggctt
     3421 cacctcgccc aggcgatcgg cgcggccgag gatcctggcg ttggtctcgg tcgccgcggt
     3481 cagcgcctga accggcgtca tgccgtcctt caccatccaa cccaactccc gccagctttc
     3541 cccgtgcggg aagacaccca cgtccgagcc ggagccgatg gtgaccccga cgctcagcgc
     3601 caggcggaag gcgcgctcgg cggcctgcat ggcgctcgtc ggcgggttgg tccccgggac
     3661 gtagtgctgg aagtagatcg aggtcgcctc gggcgcggtc agggtgggca cataggccac
     3721 gcccttggcc ttcatcagcc ggaaggtggc ctcggacgcg ccatagccgt gctcgatggt
     3781 gtcgacgccc gcctcgacgg cgttgtggat gccggcgtcg ctggcggcat ggaccgcgac
     3841 tggccggccc
//
LOCUS       DATAJL010000352         1748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57047,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000352 DATAJL010000000
VERSION     DATAJL010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57047"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1148)
                     /locus_tag="VHN39_06755"
     CDS             complement(<1..1148)
                     /locus_tag="VHN39_06755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816074.1"
                     /translation="MRTGHKLSLLAGATIMATAAVAQPAQKVTGPIAVYWMSASTQSG
                     FGMPGMSGGGRPSMSQIMGMVNGGGGAQHSLTLQLGSTQKPTGAPNADHLPPQTLGAG
                     PSLPLVTPEPPPPSARPEPEEQPAVPREYQKPKGKMLIFWGCGEHAKPGQPLVIDFAQ
                     MGEGKLPAGMEMLGKGFGFRPMQPPSARRYATYGEWPNAQSRTTVPSEGSLVGPHSVQ
                     GDYSPAIKFNLGATQDFLGPLTLTTNTKTPGGPAQLGWAAVSGAQAYAATVIGASQEG
                     RGGRGGGNQDPTVVLWSSSETQAAAFALPDYISPGDLARGVESHALMGPSTTSCLVPK
                     EVVDASPQGLLQMAAYGGEANFVYPPRPTDPKITWNQQWQVKVRYRSAT"
     gene            complement(1214..>1748)
                     /locus_tag="VHN39_06760"
     CDS             complement(1214..>1748)
                     /locus_tag="VHN39_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HEX2816075.1"
                     /translation="LKGGIGSASIVAGDGITVGAIVAVNSFGAVTAPGGRTFWAAPYE
                     IGAEFGGLGSAGLAAAPEDWGLVKTASDTRNTTIACVAVDVALTPAQARRVAIMAQDG
                     LARAIRPIHSPFDGDVVFAISTARRPMPRDADHTVARLGALAADCLARAVARAVFEAT
                     AWPGAEIATWRGLQAPE"
BASE COUNT          226 a          628 c          636 g          258 t
ORIGIN      
        1 gtggcggagc ggtaacggac cttgacctgc cattgctggt tccaggtgat cttcgggtcg
       61 gtgggccggg gcggatagac gaagttggcc tccccgccat aggccgccat ctgcaagagg
      121 ccttgcgggg aggcgtccac cacctccttg ggcaccaggc agctggtggt cgagggtccc
      181 atcagggcat ggctctcgac gccgcgggcg aggtcgccgg gggagatgta gtccggaagc
      241 gcgaaggccg cagcctgggt ctccgacgag ctccagagca ccacggtggg gtcctgattg
      301 ccgccgccac gcccgccgcg gccctcctgg ctcgccccga tgaccgtggc ggcgtaggcc
      361 tgggcgcccg acaccgccgc ccagccgagc tgggccggcc cgcccggggt cttggtgttg
      421 gtggtcagcg tcagcgggcc caggaagtcc tgggtggcgc cgaggttgaa tttgatcgcc
      481 gggctgtagt cgccctggac ggagtggggg cccaccagcg agccctcgct cggcacggtc
      541 gtgcggcttt gcgcgttcgg ccattcgcca taggtggcgt agcggcgggc cgacggcggc
      601 tgcatgggcc ggaagccaaa gcccttgccc agcatctcca tcccggcggg aagtttgccc
      661 tcgcccatct gggcgaagtc gatgaccagc ggctggccgg gtttggcgtg ctcgccgcaa
      721 ccccagaaga tcagcatctt gcccttgggc ttctggtact cgcgggggac ggcgggttgc
      781 tcttccggct ccggccgggc gctgggcggc ggcggctccg gcgtcaccag cggcaggctg
      841 ggaccagcgc ccagggtctg cggcggcagg tgatcggcgt tgggggcgcc cgtgggtttc
      901 tgggtcgagc ctagctgcag ggtcaagctg tgctgcgccc cgccgccgcc gttcaccatc
      961 cccatgatct ggctcatcga gggccgcccg ccgccgctca ttccgggcat gccgaagccg
     1021 ctctgggtcg aggcgctcat ccagtagacg gcgatcgggc cggtgacctt ctgcgcgggc
     1081 tgcgcgaccg cggccgtcgc catgatcgtg gcgcccgcca gcaggctaag tttgtgaccc
     1141 gtgcgcatcg aaagcctccc catcgaacag cgatgcgcga ggctagcagc gccgggccac
     1201 gggctccata cgcctattca ggcgcctgca ggccgcgcca ggtggcgatc tcagcgcccg
     1261 gccaggccgt ggcctcgaac accgcccgcg ccacggcgcg cgccaggcag tcggcggcca
     1321 gcgcgcccag ccgcgccacc gtatggtccg cgtcccgcgg catcggccgc ctggccgtgg
     1381 agatcgcgaa caccacgtcg ccgtcgaagg gcgaatggat cggccggatg gcgcgggcca
     1441 ggccatcctg ggccatgatc gccacccgcc tggcctgggc cggcgtcagg gcgacgtcga
     1501 ccgccacgca ggcgatggtc gtgttgcgcg tgtcgctcgc ggttttgacg agcccccagt
     1561 cctcgggcgc ggcggccaga cccgccgagc ccaggccgcc gaactccgcg ccgatctcat
     1621 agggcgccgc ccagaaggtc cgcccgcccg gcgccgtgac cgcgccgaag ctgttcacgg
     1681 ccacgatggc gcccaccgtg atcccgtcgc cagcgacgat cgaggccgag ccgatcccgc
     1741 ccttcagc
//
LOCUS       DATAJL010000353         4060 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_32027,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000353 DATAJL010000000
VERSION     DATAJL010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32027"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..188
                     /locus_tag="VHN39_06765"
     CDS             <1..188
                     /locus_tag="VHN39_06765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816076.1"
                     /translation="AFTVDDPATYTETWKGEMPFHTTKEPMYEYACHEGNYSLAGLLE
                     GARYVEAHSQPAASPAP"
     gene            complement(231..956)
                     /locus_tag="VHN39_06770"
     CDS             complement(231..956)
                     /locus_tag="VHN39_06770"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEX2816077.1"
                     /translation="MIDRRGVIAGGGVSLLAPSVRAAPEAPLFVSGPLAKNSLATSFH
                     TPPDALKLPDIPLIGEHGPQALSHLPSKTWLISLWAEWCAPCLMEAGDLAALGQTYGG
                     RGFGVIFVLTGSNKKLNFAGARDLLGKYRAGGATLFVEADGHGAVMQALATQDYDPET
                     RALVKHDRGASLPCNLLVDRRGRIRGRSFGAMSPVVAGQTLHEGVMHEEDKARVLTQR
                     STWATPVGQEFIAALASGALEKA"
     gene            complement(982..1290)
                     /locus_tag="VHN39_06775"
     CDS             complement(982..1290)
                     /locus_tag="VHN39_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEX2816078.1"
                     /translation="MALPAATKVVQWGDSDVYKVGGKVFAICGLRGGLSFKVSEIGFV
                     ALTEGGPARQAPYLAKGHWVIVDLDGADDADLIDWITTAHGLIAAKLTRLQRRELGLA
                     "
     gene            complement(1317..1664)
                     /locus_tag="VHN39_06780"
     CDS             complement(1317..1664)
                     /locus_tag="VHN39_06780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEX2816079.1"
                     /translation="MTPAAFEKAAMALGGAEFSVKWGADYVYSVGGKMFAATDEGGTT
                     LSLKVSDIAFEVLIDTGRARPAPYAARFKWVMFDDLAALDADEVTDWLTTAHGLVAAR
                     LTRKQRAAIGLAV"
     gene            complement(1821..2471)
                     /gene="msrA"
                     /locus_tag="VHN39_06785"
     CDS             complement(1821..2471)
                     /gene="msrA"
                     /locus_tag="VHN39_06785"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEX2816080.1"
                     /translation="MFGRKTLELPTAETALPGRAHPIPTAQTHFINGHPLKGPYPEGL
                     ETAVFAMGCFWGEEKKFWVVPGVWVTAVGYVNGLTPNPTYEEVCSGRTGHTEAVLVVY
                     DPKIVRYAALLKVFWESHDPTQGMRQGNDIGTQYRSGIYPENDAQAAAAEASKEAYQQ
                     ALSAKGFGRITTEIVPAGEFYFAEDYHQQYLAKNPAGYCGIGGTGVTCPIGVGVEA"
     gene            2598..3560
                     /locus_tag="VHN39_06790"
     CDS             2598..3560
                     /locus_tag="VHN39_06790"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2816081.1"
                     /translation="MRRALKATLIGGCLVVLASGGLAFASGGGSMPASSGGGGSSMPS
                     ASGPSYDPATEYAKAITALKASKYKDAARAAGHVTDAVPTNPDAWRLLGMATAGANDW
                     KGSRRAYEKAVKLTPDDPISHAGLAVALANLKDEKAQSEADWLKSKVQACGDSCPDAA
                     RLKDLNSRVESAMTPPAAGAPKPSAMLDRSILFGGAKTGDAAYVLAVSLINERRYDEA
                     LASLDKAAATFGPHPDILTYQGYTWRKKGDYARAETYYRQALAIDPKHVGATEYYGEL
                     KVARGDVAGARVMLAKLDKICTYGCADAEELRRWIDAGGDPQKN"
     gene            3662..>4060
                     /locus_tag="VHN39_06795"
     CDS             3662..>4060
                     /locus_tag="VHN39_06795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816082.1"
                     /translation="MLWVARTADPARALGSVPTECLKIPADPALAARIEVGRAAFRTA
                     VLLGGQAGRAGINCETCHRNGRTNPDFLFPGISGAPGTADVTNSLFSTHRGNGIDDPK
                     PIPDLAGPKSKLKISQAPAERKLEPFIHGLI"
BASE COUNT          665 a         1404 c         1345 g          646 t
ORIGIN      
        1 acgccttcac tgtggacgat cccgccacct acaccgagac ctggaagggc gagatgccgt
       61 tccacacgac caaggagccg atgtacgagt acgcctgcca cgaggggaac tactccctgg
      121 ccggcctgct ggagggcgcc cggtacgtcg aagcccacag ccagccagcg gcctctccgg
      181 cgccgtaggc ccaggccgcc tcggctaggg gaggagaagg tcgaccggcc ctaggccttt
      241 tccaaagccc ccgaggccag ggccgcgatg aattcctggc cgacaggcgt cgcccaggtc
      301 gaacgttgtg taagcaccct ggccttgtcc tcctcgtgca tcacgccctc atggagcgtc
      361 tgtccagcca ccaccggcga cattgcgccg aaggatcggc cgcggatccg cccgcgccgg
      421 tcgaccagca ggttgcaagg cagacttgcg cctcggtcgt gcttcaccag cgcccgcgtc
      481 tccggatcgt agtcctgtgt tgcgagggcc tgcatcaccg cgccatggcc atcggcttcc
      541 acgaagagcg ttgcgccccc agcccgatat ttgccgagca ggtcgcgggc gcccgcgaag
      601 ttcagcttct tgttgctgcc ggtgaggacg aagatcaccc cgaatccgcg accaccatag
      661 gtctgaccga gcgcggccag gtcgccggcc tccatcaggc acggcgcgca ccattccgcc
      721 caaaggctga tcagccaggt cttgctgggc aggtgcgaaa gcgcctgcgg tccgtgctct
      781 ccgatcaggg ggatgtccgg gagtttcaag gcgtccggcg gggtgtgaaa gctcgtggcc
      841 aggctgttct tcgccagggg gccggagacg aacagcggcg cctcgggtgc ggccctgacg
      901 cttggggcca gaagcgaaac gccgccgccg gcaatgacac ccctgcggtc gatcatcgaa
      961 ggctctccct gaaaaccatg ctcaagctag gccgagttcg cgcctctgca agcgggtcag
     1021 cttggctgcg atcaggccgt gggccgtggt gatccagtcg atgagatcgg cgtcgtccgc
     1081 gccatcgagg tcgacgatca cccagtggcc cttggcgagg tagggggcct ggcgcgccgg
     1141 gccgccttcg gtcagggcca cgaagccgat ctcgctgacc ttgaacgaca ggccgcccct
     1201 cagcccgcag atggcgaaga ccttgccgcc caccttgtag acgtcgctgt cgccccactg
     1261 gacgaccttg gtcgcagccg gcagcgccat ggcgaccgac tcgatctcct cgcgcgtcaa
     1321 acagccagac caatcgcggc gcgctgcttg cgggtgagcc tggccgcgac cagcccatgg
     1381 gccgtcgtga gccagtccgt cacctcgtcg gcgtccagcg ccgccagatc gtcgaacatc
     1441 acccacttga agcgcgcggc atagggcgcg ggccgggcgc ggccggtgtc gatcaggacc
     1501 tcgaaggcga tgtcgctgac cttgagcgac agggtcgtcc cgccctcgtc cgtcgcggcg
     1561 aacatcttgc cgcccaccga atagacgtag tcggcgcccc atttgacgga gaactccgcg
     1621 ccgccgagcg ccatggcggc cttctcgaac gccgccggcg tcatgcctgg tgtcccgatt
     1681 ccgaagttcg cacgcgcttg cggcaggctc ggacgaactt cggaatcgat gaggacacca
     1741 gcaagctcct atttctagtg tgcttcttgg atctgaggtt ggcgcggcgc tccatccaac
     1801 cagcaggcga acccagcaca ctaggcctcg acgccgacgc cgatcgggca ggtgacgccg
     1861 gtgccgccga tcccgcagta gccggccggg ttcttggcca ggtattgctg gtggtagtcc
     1921 tcggcgaagt agaactcgcc ggccggcacg atctcggtgg tgatccggcc gaagcccttg
     1981 gcgctcagcg cctgctggta ggcttccttc gacgcctcgg ccgcggcagc ctgggcgtcg
     2041 ttctccggat agatacccga gcggtactgg gtgccgatgt cgttgccctg gcgcatgccc
     2101 tgggtcgggt cgtggctctc ccagaacacc ttcaggagcg ctgcgtatct aactattttc
     2161 ggatcataga ccaccagcac cgcctcggta tgaccggtgc ggcctgagca gacctcctcg
     2221 taggtcgggt tcggcgtcag gccgttgacg tagcccaccg ccgtcaccca gacgccgggc
     2281 acgacccaga acttcttctc ctcgccccag aagcagccca tggcgaagac cgcggtctcc
     2341 aggccctcgg ggtagggccc cttcagcgga tggccgttga tgaagtgggt ctgggcggtg
     2401 gggatcgggt gcgcgcggcc cggcagggcg gtttcggcgg ttggcaattc cagcgtcttg
     2461 cgtccgaaca tggggcctcc ttgcggtcag gcccgaagat agtcacccgc cggcgatttt
     2521 gcacctgtct gggtggatga cgctgggtaa gtttcgtgcc agtcttcgcg tcagaacgac
     2581 gttaaggaga tggttccatg cgacgcgcgt tgaaagccac attgatcggc ggatgcttgg
     2641 tggtcctggc cagtggcggg ctcgccttcg ccagcggggg cggctccatg ccggcctcca
     2701 gcggcggcgg cggcagctcg atgccgagcg cctcgggacc gagctacgac ccggctaccg
     2761 aatatgccaa ggcgatcacg gcgctcaagg ccagcaagta caaggacgcc gcccgggccg
     2821 ccggccacgt caccgacgcg gtgccgacca accccgacgc ctggcgcctg ctgggcatgg
     2881 ccaccgccgg cgccaacgac tggaagggct cgcggcgcgc ctatgagaag gccgtgaaac
     2941 tgacgccgga cgatcccatt tcgcacgcgg gcctcgccgt tgcgctggcc aacctgaagg
     3001 acgagaaggc ccagtccgag gccgattggc tgaagtccaa ggtccaggcc tgtggcgaca
     3061 gctgcccgga tgcggcccgc ctgaaggacc tgaactcgag ggtggaaagc gccatgaccc
     3121 cgccggccgc aggcgcgccc aagcccagcg ccatgctcga ccgctcgatc ctgtttggcg
     3181 gcgccaagac cggcgatgcg gcctatgtgc tggcggtcag tctgatcaac gagcggcgct
     3241 atgacgaggc gctcgcctcg ctggacaagg cggccgcgac cttcgggccg caccccgaca
     3301 tcctgaccta ccagggctac acctggcgca agaagggcga ctacgcccgg gcggaaacct
     3361 actaccgcca ggcgctcgcc atcgatccca agcacgtcgg cgccaccgaa tactacggcg
     3421 agctgaaggt cgcccgtggc gacgtggccg gcgcccgggt gatgctggcc aagctggaca
     3481 agatctgcac ctacgggtgc gcggacgctg aggagctgcg ccgttggatc gacgccggcg
     3541 gcgacccgca aaagaactag cgggacgtct tctcgctccg gcttttctgg gcggtctctt
     3601 cctcgccagc gttgcgggcg caagcgcgct cgcagcgctc ggcgatgcgc cgatccgcgg
     3661 catgctgtgg gtggccagga ccgccgatcc ggcgcgcgcc ctgggctcgg tccccacgga
     3721 atgcctgaag attccggccg acccggcgct ggccgccagg atcgaagtcg gacgggccgc
     3781 gttccgcacc gccgtcttgt tgggcggcca ggccggccgc gcgggcatca actgcgagac
     3841 ctgtcacagg aacggtcgca ccaatccgga cttcctgttt ccgggcatat ccggcgcgcc
     3901 cgggacggcg gacgtgacca attccttgtt ttccacccac cgcggcaacg gcattgacga
     3961 ccccaagccg atccccgacc tcgctggccc caaatcgaag ctgaagatca gccaggcgcc
     4021 ggccgagagg aagctggagc cgttcattca cggcctgatc
//
LOCUS       DATAJL010000354         3040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44810,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000354 DATAJL010000000
VERSION     DATAJL010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44810"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VHN39_06800"
     CDS             <1..518
                     /locus_tag="VHN39_06800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816083.1"
                     /translation="AMAPIPPPEATLQNIQVVRAGGFASLQVGDFTAGPGTPTTMDKT
                     VTVRAGTQKAPSGSYAKFLGETLAAELKGAGKLDPSAGLVVSGVVTKTHVDSSLPDGS
                     AALEAHFTLKKNGAVAYDRTLAAEATWKSSLMGAIAIPDAFNHYNALYPQLVTKLLSD
                     PDFKAAAKAGG"
     gene            584..1123
                     /locus_tag="VHN39_06805"
     CDS             584..1123
                     /locus_tag="VHN39_06805"
                     /inference="COORDINATES: protein motif:HMM:NF019819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEX2816084.1"
                     /translation="MKAALLALALSAASATAAIAAPPIAPEPAKPVDAATFFAGRWYE
                     IGRTPMSLTDGCVAGYTDYLKKGEALTQRDACRDKTPDGKEKVIGGPLKILNPGQNTK
                     VHVSYRLFGVVPIAREYWMLDHGDGWFIQATPAMDMINLYTRDAHPSAALIAEMTART
                     KALGYDPAKLEFPALAAPN"
     gene            complement(1120..1467)
                     /locus_tag="VHN39_06810"
     CDS             complement(1120..1467)
                     /locus_tag="VHN39_06810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEX2816085.1"
                     /translation="MTPDEMEAIVMTFPGVEKGMSYGSPAYKLNGKFFTRLRRDDQSM
                     VLMEVSLDEREMLMEAEPGTFHFTAHYRDYPCVLARVADLHPGSLKNFLDRRFRKIAK
                     KSVVKDYDAQNAG"
     gene            complement(1464..2069)
                     /locus_tag="VHN39_06815"
     CDS             complement(1464..2069)
                     /locus_tag="VHN39_06815"
                     /inference="COORDINATES: protein motif:HMM:NF024769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEX2816086.1"
                     /translation="MSVPTFFATPADWRAWLEAHHATAAELSVGFRKLGSGKASITWP
                     ESVDEALSFGWIDGVRHRIDDEAYRIRFTPRKAGGIWSQVNLKRFAELEADGRIAPAG
                     RAAWEIGKARTQVYSYERPTSELAGDDLALFQANAAAWAFFQGQPAGYRKLTVHRILQ
                     GKTPGTRAKRLALLIDASSQSRRLATATRVEAPKAEPKEDS"
     gene            complement(2069..>3040)
                     /locus_tag="VHN39_06820"
     CDS             complement(2069..>3040)
                     /locus_tag="VHN39_06820"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEX2816087.1"
                     /translation="EAYFKRIGGWMTKADLAAHHTEWVEPRSIDYRGTDVWGLPPNSQ
                     GLVTLQLLNIMAEFDIKAMGFQSAMALHHEVEAKRLAFEDRAKFYADPSFYKQPTDWL
                     LSKDYAKERAKLIRPDRILVPAYAGQAPSHGDTTYFTVADADGLMISQIQSNYRGMGS
                     GLMPDGLGFMFQNRGELFALADGHPNVYAPGKRPFQTIIPGFATRDGEPLLSFGVMGG
                     DMQPQGQAQVISNLVDFDLGLQEAGDSPRWHHEGGNEPTGEQLGELGVLNLETGVPEG
                     TKKALADLGWKLGPNPGVYGGYEAIQRHPGRYAAATEMRKDGTALAY"
BASE COUNT          472 a         1051 c         1009 g          508 t
ORIGIN      
        1 gcgccatggc gccgataccg ccgccggagg cgacgctgca gaacattcag gtggtccgcg
       61 ccggcgggtt cgcatccttg caggtgggcg acttcaccgc cggccccggg acgccgacca
      121 ccatggacaa gaccgtcacg gtccgcgccg gaacccagaa ggcgcccagc gggtcctacg
      181 cgaagttcct cggtgagacc ctggcggccg aactgaaggg cgcgggcaag ctcgatccca
      241 gcgccggcct ggtggtttcg ggggtggtca ccaagaccca tgtcgacagc tcgctccccg
      301 acggatcggc cgcgctggaa gctcacttca cgctgaagaa gaacggcgcc gtggcctatg
      361 acaggacgct ggcggccgag gccacctgga agtcgagcct gatgggcgcc atcgccatcc
      421 ccgacgcctt caatcactat aacgccctct acccccagct tgtgaccaag ctgctgtccg
      481 accccgactt caaggcggcg gccaaggccg gcggctagat tcgcaagcgc cgccgctttg
      541 gcttagatcg ggtgtcctgg atcgggccgt aaaggagcat ccgatgaaag ccgccctctt
      601 ggcgctcgcc ctgtctgcag ccagcgccac cgcggcgatc gccgccccgc ccatcgcgcc
      661 ggagcccgcc aagccggtgg acgcggcaac gttcttcgcc ggccgctggt acgagatcgg
      721 ccgcacgccc atgtcgctca ccgacggctg cgtcgccggc tacaccgact atctgaagaa
      781 gggcgaggcg ctcacccagc gcgacgcctg ccgtgacaag accccggacg gcaaggagaa
      841 ggtgatcggc gggcccttga agatcctcaa ccccggccag aacaccaagg tccatgtcag
      901 ctaccgcctg ttcggcgtgg tgccgatcgc gcgcgagtac tggatgctgg atcacggcga
      961 cggctggttc atccaggcga cgcccgccat ggacatgatc aacctctata cccgcgacgc
     1021 gcacccgtcc gcggccctga tcgccgagat gacggcgcgc accaaggcgc tgggctacga
     1081 cccggcaaaa cttgaattcc cggccctggc ggcgccgaac taaccggcgt tctgggcgtc
     1141 gtagtccttc accacagact tcttggcgat cttgcggaag cggcggtcga ggaagttctt
     1201 gagcgagccc ggatgcaggt cggcgacgcg ggccagcacg caagggtagt cccggtagtg
     1261 ggcggtgaag tggaaggtgc ccggctcggc ctccatcagc atctcgcgtt cgtcgaggct
     1321 gacctccatc agcaccatcg actggtcgtc gcggcgcagg cgggtgaaga acttgccgtt
     1381 cagcttgtag gcgggcgagc cgtagctcat gcccttttcc acgccgggga aggtcatgac
     1441 gatggcttcc atctcgtcgg gcgtcatgag tcctcctttg gctccgcctt gggggcctcc
     1501 actctcgtcg ctgtcgccag tctgcgcgac tgactggacg cgtcaatcag cagcgccagg
     1561 cgcttcgccc gcgtgccggg cgttttgccc tgcaggatgc ggtggacggt aagcttgcgg
     1621 tagcccgcgg gctggccctg gaaaaaggcc caggccgccg cgttggcctg aaacagggcc
     1681 aggtcgtcgc ccgccaattc gctcgtcggc cgttcgtagg aatagacctg ggtgcgcgcc
     1741 ttgccgatct cccaggcggc gcggccggcc ggcgcgatcc gtccgtcggc ctccagctcg
     1801 gcgaaccgct tcaggttcac ctggctccag atgccgccgg ctttgcgcgg cgtgaagcgg
     1861 atgcggtagg cctcgtcgtc gatccgatgg cgcaccccgt cgatccagcc gaagctcagc
     1921 gcctcgtcca cgctctcagg ccacgtgatc gaggccttgc ccgaccccag cttccggaac
     1981 ccgaccgaga gctctgcggc cgtcgcgtgg tgcgcctcca gccaggcccg ccagtcagcc
     2041 ggcgtcgcga agaatgtggg aacgctcatc aataggcgag cgccgtgccg tccttgcgca
     2101 tctcggtggc ggcggcgtag cggcccgggt ggcgctggat ggcctcgtag ccgccgtaga
     2161 cgccggggtt ggggcccagc ttccagccga gatcggccag cgccttcttg gtgccctccg
     2221 gcacgccggt ctccaggttc agcacgccca gctctccgag ctgttcgccg gtgggctcgt
     2281 tcccgccctc gtggtgccag cgcgggctgt cgccggcctc ctgcaggccc aaatcaaagt
     2341 cgacgaggtt ggagatcacc tgcgcctggc cctgcggctg catgtccccg cccatgaccc
     2401 cgaaggagag cagcggctcg ccgtcccgcg tcgcgaagcc cgggatgatc gtctggaacg
     2461 gccgcttgcc gggcgcgtag acgttggggt ggccgtcagc cagagcgaac agttcccctc
     2521 tgttctggaa catgaatccc agcccgtccg gcatcaggcc cgagcccatg ccgcgatagt
     2581 tggactggat ctggctgatc atcagcccgt cggcgtcggc gacggtgaaa taggtggtgt
     2641 cgccgtggct cggcgcctgg ccggcgtagg cggggaccag aatcctgtcc ggccggatca
     2701 gcttggcccg ctccttggcg tagtccttgg agagcagcca gtcggtgggc tgtttgtaga
     2761 aggatgggtc ggcatagaat ttcgcccggt cctcgaacgc cagccgcttg gcctccacct
     2821 cgtggtgcag cgccatggcc gactggaagc ccatcgcctt gatgtcgaac tcggccatga
     2881 tgttcagcag ttgcagcgtc accagcccct ggctgttggg cggcaggccc cagacgtcgg
     2941 tgccgcgata gtcgatcgaa cgaggctcca cccattcggt gtggtgggcg gccaggtccg
     3001 ccttggtcat ccagccgccg atccgcttga aataggcctc
//
LOCUS       DATAJL010000355         3485 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19044,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000355 DATAJL010000000
VERSION     DATAJL010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3485)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19044"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1230
                     /locus_tag="VHN39_06825"
     CDS             <1..1230
                     /locus_tag="VHN39_06825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CpaF family protein"
                     /protein_id="HEX2816088.1"
                     /translation="ELDLAKLDKLDEKDMRREVMSLVADFARAERMALNTADLQELGA
                     SIYDEMVGLGPLEPLLKDESINDILINGPYQVYVERRGELELTPVRFRDNDHLLRIVN
                     RIVAGVGRRIDESQPMVDARLQDGSRVNAAIAPIAIDGACVSIRKFSKKPLTLEKLVG
                     LGAMPMAVADFMHGAVKARVSTVISGGTGSGKTTLLNALSAAISHGERLITIEDAAEL
                     QLQQPHVVRLETRPPNIEGKGEIRQRELVKNALRMRPDRVILGEVRADEAFDMLQAMN
                     TGHEGSMATIHANNPREAIGRLEQMIAMGGLAISPDAMRSQIASAIGMIIQVMRLSDG
                     KRKITHVTEITGMEGQVVQMQDIFTFNRTHTDPDGTVHGEFRATGLRPRCIEEMQRRG
                     IAYDMANFDPTRVLGTT"
     gene            1227..2186
                     /locus_tag="VHN39_06830"
     CDS             1227..2186
                     /locus_tag="VHN39_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEX2816089.1"
                     /translation="MKIDGHIIFLILVFAAVFTAGQAVIGLVSVATQKRKMNKRLKVA
                     ERVDGVSALVMELRKQRGLNAAGERGKRLRWLSNLIVASGVAYDPKKWTLYAVAVALI
                     GGAAPAVLLKNPLLFPVGALLLGIGGPIFYLRFMAARRAKALGFQLPQALEIIVRSLE
                     AGHPVPTAINLVGREMSDPVGTEFGMAADEIAYGSTMQEAIGRMAERCQHPDVDLFAA
                     TVRLQERAGGNLTGLLKLNANTVRERHKMRLKIKAASSEGRASAMILTSAPFIAMGFI
                     MVSSPHFYGDVIHEPIVKWGLTGLGVWMFIGNMVMRRMIDLRL"
     gene            2191..3147
                     /locus_tag="VHN39_06835"
     CDS             2191..3147
                     /locus_tag="VHN39_06835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEX2816090.1"
                     /translation="MNPDQLQSLVSVLGAVLVLAGVGGVAWLAATELRLRAIRRGRMQ
                     TAGGPQTGMGRASRRPASGISASLLGTIRTLGQQSAVKDPAKLSVLRSQLMQAGFYNR
                     EAPVIYLGVRATALAVATLGVIMLVPLIAGGRGGMGGIAVASFLAAAAILGPDQVLKI
                     RRGKREREYSDGFPDLLDLLVASVEAGLSLDAAVSRVTEELARRYPNLTVHLRFLVLE
                     LRAGKSRKDAWTAFADRLGIDDARQLATMLRQAEEMGTSLGDTLTVFSQDMRSKRMLR
                     AEEKALALSAKLTVPLILFIFPCLLGALMLPAAARLMHVFAK"
     gene            complement(3154..>3485)
                     /locus_tag="VHN39_06840"
     CDS             complement(3154..>3485)
                     /locus_tag="VHN39_06840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816091.1"
                     /translation="LQGATRHALGGTLKIPLLQGEASVRIEPQSVFLMRGIGYSGEWR
                     HGGLKGELVVAREDIDLAKVDMAAPENWHIQAISKATMEAPGEATQEGIGIFEQLIAG
                     PYRPYGL"
BASE COUNT          558 a         1263 c         1128 g          536 t
ORIGIN      
        1 gagctcgacc tcgccaagct cgacaagctc gacgagaagg acatgcggcg cgaggtcatg
       61 agcctggtcg ccgacttcgc ccgcgccgag cgcatggcgc tgaacaccgc cgacctgcag
      121 gagctcggcg cctcgatcta cgacgagatg gtgggcctgg gcccccttga gccgctgctc
      181 aaggacgaga gcatcaacga catcctgatc aacggcccct accaggtcta tgtggagcgt
      241 cggggcgagc tggagctgac ccccgtccgc ttccgcgaca acgatcacct gctgcgcatc
      301 gtcaaccgca tcgtcgccgg cgtcggccgc cggatcgacg agagccagcc gatggtcgac
      361 gcccgcctgc aggacggcag ccgggtgaac gccgccatcg ccccgatcgc catcgacggc
      421 gcctgcgtct cgatccggaa gttctccaag aagccgctga ccctggaaaa gctggtgggc
      481 ctgggcgcca tgccgatggc cgtcgccgac ttcatgcacg gcgccgtcaa ggcccgcgtg
      541 tccactgtga tctccggcgg tacgggctcg ggcaagacga cgctgctgaa cgcgctctcc
      601 gccgccatca gccacggcga gcgcctgatc accatcgaag acgccgccga actgcagctt
      661 cagcagccgc acgtggtgcg cctggaaacc cggccgccga acatcgaggg caagggcgag
      721 atccgccagc gcgagctggt caagaacgcc ctgcggatgc gtcccgaccg cgtgatcctg
      781 ggcgaagtcc gggccgacga ggccttcgac atgctgcagg ccatgaacac cggccacgaa
      841 gggtcgatgg cgacgatcca cgccaacaac ccgcgcgagg cgatcggccg cctggagcag
      901 atgatcgcca tgggcgggct cgccatcagc cccgacgcca tgcgctcgca gatcgcctcg
      961 gccatcggga tgatcatcca ggtgatgcgc ctctcggacg gcaagcggaa gatcacccac
     1021 gtcaccgaga tcaccggcat ggagggccag gtggtgcaga tgcaggacat cttcaccttc
     1081 aaccgcaccc acaccgaccc cgacggcacc gtccatggcg agttccgcgc caccggcctg
     1141 cgcccccgct gcatcgagga aatgcagcgg cgcggcatcg cctacgacat ggccaatttc
     1201 gatcccaccc gggtcttggg gaccacatga agatcgacgg tcacatcatc ttcctgatcc
     1261 tggtcttcgc cgccgtcttc accgccggcc aggcggtgat cgggctggtc tccgtggcta
     1321 cccagaagcg caagatgaac aagcgcctga aggtcgccga gcgggtcgac ggggtctccg
     1381 ccctggtcat ggagctgcgc aagcagcgcg gcctcaacgc cgccggcgag cggggcaagc
     1441 gcctgcgctg gctctccaac ctgatcgtcg cctccggcgt cgcctacgac ccgaagaagt
     1501 ggaccctcta cgccgtggcg gtcgccctga tcggcggcgc ggctccggcg gtcctgctca
     1561 agaacccgct gttgttcccg gtcggcgccc tgctgctggg gatcggcggg ccgatcttct
     1621 atctgaggtt catggccgcg agacgcgcca aggccctggg cttccagttg ccccaggcgc
     1681 tggagatcat cgtccgcagc ctcgaggccg gtcacccggt tcccaccgcc atcaacctgg
     1741 tgggacgcga gatgagcgac ccggtcggca ccgagttcgg catggccgcc gacgaaatcg
     1801 cctatggctc caccatgcag gaggcgatcg ggcgcatggc cgagcgctgc cagcaccccg
     1861 acgtcgacct gttcgcggcc accgtgcgcc tgcaggagcg ggccggcggc aacctgaccg
     1921 gcctgttgaa actcaacgcc aacaccgtgc gcgagcgcca caagatgcgc ctgaagatca
     1981 aggccgcgtc ctccgaaggc cgcgcctcgg cgatgatcct gacgtcggcg ccgttcatcg
     2041 ccatgggctt catcatggtg tcctcgccgc acttctacgg cgacgtgatc cacgaaccga
     2101 tcgtcaagtg gggcctgacc ggcctgggcg tttggatgtt catcggcaac atggtcatgc
     2161 gccgcatgat cgatctgcgg ctgtagcctc atgaaccccg atcaacttca aagtctggtt
     2221 tcggtcctgg gcgccgtcct tgtgctggcg ggcgtcggcg gggtggcctg gctggcggcg
     2281 accgagctgc gcctgcgcgc cattcgccgt ggccggatgc agaccgccgg cgggccgcag
     2341 accggcatgg gtcgcgcctc ccgaagaccc gcgagcggca tcagcgcctc actgctgggg
     2401 accatccgca ccctgggcca gcagagcgcg gtcaaggacc ccgccaagct ctccgtgctg
     2461 cgctcgcagc tgatgcaggc gggtttctat aaccgggagg cgccggtcat ctacctgggc
     2521 gtccgggcta cggccctggc cgtcgccacg ctcggcgtga tcatgctcgt gcccctgatc
     2581 gccggcggca ggggcggcat gggcggcatc gccgtcgcca gcttcctggc cgccgcggcc
     2641 atccttggcc ccgaccaggt gctgaagatc cgccgcggca agcgcgagcg cgaatacagc
     2701 gacggcttcc ccgatctcct ggatctgctg gtggcttccg tcgaggcggg cctcagcctc
     2761 gacgccgccg tcagccgggt gaccgaggaa ctggcgcggc gctatccgaa cctcaccgtc
     2821 cacctgcgtt tcctggttct ggagctcagg gccggcaagt cgcgcaagga cgcctggacc
     2881 gccttcgccg accgcctggg catcgacgac gcccgccagc tcgccaccat gctgcgccag
     2941 gccgaggaaa tgggcaccag cctcggcgac accctgaccg tcttctccca ggacatgcgg
     3001 tccaagcgca tgctgcgcgc cgaggaaaag gcgctggcgc tctcggccaa gctgacggtg
     3061 ccgctgatcc tgttcatctt cccgtgcctg ctgggcgccc tgatgctgcc ggccgccgcg
     3121 cgcctgatgc acgtcttcgc gaagtaggcc cggctacagc ccgtacggcc gataggggcc
     3181 cgcgatcagc tgttcgaaga tgccgatgcc ctcctgggtc gcctcgcccg gcgcctccat
     3241 cgtggccttc gagatcgcct ggatgtgcca gttctccggc gccgccatgt cgaccttggc
     3301 gaggtcgata tcctcgcgcg caaccacgag ctcgcccttc aaccccccgt ggcgccactc
     3361 gccgctgtag ccgatgccgc gcatcagaaa gacgctctgc ggttcgatcc gcaccgaggc
     3421 ctcgccctgc agcagcggga tcttgagcgt gccgcccagc gcatgccgcg tggcgccctg
     3481 caagg
//
LOCUS       DATAJL010000356        12067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44827,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000356 DATAJL010000000
VERSION     DATAJL010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 12067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12067
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44827"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1084)
                     /locus_tag="VHN39_06845"
     CDS             complement(<1..1084)
                     /locus_tag="VHN39_06845"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2816092.1"
                     /translation="MRTILALTLAPLLLALGLAAPAMAQQQERLGAAQPTGAGAGQTK
                     ALEFAGGRIFQATGFGNTFMVTTKAGVVIIDTSTPGPAQRHHALLKAVSTAPVKDIIL
                     THGHGDHTGGVPLWKEPGTHVVEQANSVEFRNYQTRLAGFFAVRNAAQYNAPAGALGG
                     GRANMNPGDYAAPPLADVLFDKEYKFRLGDLTFDCLAMPGETPDMLNVWIPELKALFI
                     GDNYYASFPNMYTLRGTPTRPALNYVESINKVLALKPEIVLPSHGVPIVGAANVQRVL
                     TQYRDAILYVHDATVRGMNEGKSAYALMREIKLPPALEVGEGYGAISWSVRGIYEGYA
                     GWFDGDPATMYATAPGEAYAELVRLAG"
     gene            complement(1148..2218)
                     /locus_tag="VHN39_06850"
     CDS             complement(1148..2218)
                     /locus_tag="VHN39_06850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phosphoacceptor
                     domain -containing protein"
                     /protein_id="HEX2816093.1"
                     /translation="MAAQPPPSHLDVRLNLALAMVAASTAPLVLLDGELTVIAASDSF
                     CAAFELDPDEVAGRLILNLGKGEWNVPQLRSLLNATTSGDAEIEAYEMDLASASRGTR
                     RLVLNAQMLRYGEGQDPRLLLTVFDATDARAAEQQKDDLVREKAILLQELQHRVANSL
                     QIISSVILQSARRSTSPEARTHLHDAHDRVMSVAEVQRQLEASTLGDVKLEPYFSQLC
                     HSLGASMIRHRAQLSIEISVDESSVPASTSVSLGLVVTELVINALKHAFPGRRKGKIL
                     VAYQAHGPNWTLSVRDDGVGMPKDSDSMQAGLGTSIVEALARQLGARVQVVSANPGTM
                     VSLVHSQIAAVDDAPAPTQKAV"
     gene            2453..2593
                     /locus_tag="VHN39_06855"
     CDS             2453..2593
                     /locus_tag="VHN39_06855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816094.1"
                     /translation="MSHDPPDDAPDDVREAARRKLVGRAMVIGLVLLVAVYALFTFLG
                     RR"
     gene            complement(2602..3102)
                     /locus_tag="VHN39_06860"
     CDS             complement(2602..3102)
                     /locus_tag="VHN39_06860"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2816095.1"
                     /translation="MHLKIAAAALAALTLSGVTLAAGAARAADFVTVPLEATINAPAD
                     KAWPKINGFCQIGPWFKTTCTVAGVDGQMGSVRTIAGRVEELLVAKTAWSYTYSQPKS
                     PIDYHGTVEIQPIDKGHSKLLYTLVYDADALPKHEAADKAADKARRTTQFTTLVATMK
                     AAAEAK"
     gene            complement(3178..4548)
                     /locus_tag="VHN39_06865"
     CDS             complement(3178..4548)
                     /locus_tag="VHN39_06865"
                     /inference="COORDINATES: protein motif:HMM:NF017077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phosphoacceptor
                     domain -containing protein"
                     /protein_id="HEX2816096.1"
                     /translation="MFADRKVLAIRSERAFNAVVVGAVALGFLTLVGVGLLGAIVMNE
                     NLGFTSQVAHTYQVEGAISDFRILDERTETARRGYLLSHDESFDQAVRQTATQLSRAI
                     LRIQLLTADNPQQQANIARLRPLVFTQQQAISVSMAFARDGHSDTSQFYRDAGVGASR
                     AIRQLTDQMVHEEEQKLAIRDLRREATIAQLFRIAIAAGGLAVFLAVGSVWVILRYTR
                     QLSVSRAELAELNAGLEDQVVTRTADLEAAKAELVAGNQRLEALLREVNHRVANSLQL
                     VSAFVQMQASALDGAARTALKDTQRRIEAITQVHRRLYSAQDVESVDMNDYLGALVRE
                     LEDTLSSTAAPRTLSLVSDPVRLATDRAVSVGVIVNELITNACKYAYRRGQAGEVRVR
                     LTDEGAGLTLTVEDDGVGMAADGVVHGTGLGGRLIKAMATSLESEVLYDRAHSGVRAT
                     LRLPTA"
     gene            complement(4548..5294)
                     /locus_tag="VHN39_06870"
     CDS             complement(4548..5294)
                     /locus_tag="VHN39_06870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEX2816097.1"
                     /translation="MAGHSKFKNIMHRKGRADSARSKLFSKLSREITVAAKSGLPDPN
                     MNARLRLAVNNAKGESLPKDVIDRAIKKASGGDAEAYEEIRYEGFGPGGVGVIVEVLT
                     DNRNRAAANVRATFGKNGGNLGETGSVAFMWDRVGQIVYPAAAGSEDKIMDAAIEAGA
                     EDVESDEDGHTIYTAFEQLSEVAAALEVALGEAKSTTIAWRPKARTPISGDGAATLMK
                     LLESLEDEDDVQNVYSNEDIDPAELEKLAG"
     gene            5434..5664
                     /locus_tag="VHN39_06875"
     CDS             5434..5664
                     /locus_tag="VHN39_06875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816098.1"
                     /translation="MSEQVIEEVDDLEQPTVDGEMVHWMEPRPMSVGPAGVSVTAGAA
                     FTLGVVAAVATLALLHWLGPERVIEVRRRPRA"
     gene            5808..6497
                     /locus_tag="VHN39_06880"
     CDS             5808..6497
                     /locus_tag="VHN39_06880"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816099.1"
                     /translation="MKISNRLVGVAVGALLVAGSASSAYAGLIGPDVNYLSFADSPFA
                     GLSFSYFHLDTFEPGSSAPGATFSAGFIDGPGAEIDSVDGQGPNGHSLFSGNGAAGIT
                     FTFDKSVLGQLPTDAGIVWTDGDGPNRTFEAFDENGNSLGTIIDSTPLFFSSGGDGDF
                     HNYRFFGATNAGGISSIFIANDGGGIEVDHLQYGLLNAGVPEPATWGLMIGGFGLAGA
                     TLRRRRAVVSA"
     gene            complement(6624..7220)
                     /locus_tag="VHN39_06885"
     CDS             complement(6624..7220)
                     /locus_tag="VHN39_06885"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX2816100.1"
                     /translation="MIYLARHGQTEFNRERRIQGHVDSPLTELGVRQAKAVGRLLRDL
                     IREPEGWRIVSSPLGRAHATAELISAKLGGLPVELDDRLKEMSWGAYDGRLRAELEAE
                     EPDTFGKTGWAFDAATGESYEAVSARVGDWLSGLPPEPQRRIIAVSHGISGRVLRGLY
                     ANLDRDEASLQDVPQDAVYLLQHGGVGRIDCEPLEEAR"
     gene            complement(7217..8002)
                     /locus_tag="VHN39_06890"
     CDS             complement(7217..8002)
                     /locus_tag="VHN39_06890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2816101.1"
                     /translation="MGRLQGRTAVITGAGSGIGRAASLLFAHEGARMVCVDRADSVEE
                     TAAMIGKAGGTAVALQGDAGDEAFVKSYIDRATGEFGSLDVVWANAGISGGWMPLDEQ
                     TPDYWTEILRINLIGAFLAVKHASRVMIPTGKGSIICTASVAGIRSGAGGPAYSASKA
                     GVISLAQTSANEFYGTGVRVNAIAPGLIETGMTKPIFDGARARGNEDKIGQLNPLTRY
                     GIPDEIAHAGLFLASDDASYVNGQTIAVDGGLSTSHPVVRRKR"
     gene            complement(8056..8490)
                     /locus_tag="VHN39_06895"
     CDS             complement(8056..8490)
                     /locus_tag="VHN39_06895"
                     /inference="COORDINATES: protein motif:HMM:NF024559.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3995 domain-containing protein"
                     /protein_id="HEX2816102.1"
                     /translation="MNLALAIALTAVLAAIGLLHLSWAFGVVWPGRDEAGLVATVIGR
                     TRGGRMPSRPLTLLVAGAILGAAALVAAVSRHAVPAHFVAAALFAYAALDLIFMLRGL
                     SGYVAPVWRHTEGTPFHRLNRLYYSPLCLLIAAGLSANLLLR"
     gene            complement(8487..9338)
                     /locus_tag="VHN39_06900"
     CDS             complement(8487..9338)
                     /locus_tag="VHN39_06900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816103.1"
                     /translation="MPRARNGEVEIEWQSFGPSRDGGQPQTVLLINGLGSQMTRWPEA
                     FCEKLAAKGYRAIRLDNRDTGLSSWPTDKYTLADMANDAIAVLDAAGVSKAHIAGVSM
                     GGMIVQRIALDHASRVLSMTSIMSTTGEPSTMNPHPAAGGVLTQPAPDPAADYEAYVA
                     HGIRNARIIGSPAHPWTDDEIRDRVISEHARAFNPPGVARQMSAVRGDGDRTEALKGL
                     KLPVVVLHGADDPLLPKVGGEVTAAAIPGAELRIIPGMGHDLPPGLYDTFVDAICAAA
                     GRAETSA"
     gene            complement(9350..10315)
                     /locus_tag="VHN39_06905"
     CDS             complement(9350..10315)
                     /locus_tag="VHN39_06905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HEX2816104.1"
                     /translation="MKAAVYYENGGPDVFKYEDVPDPDCHRKGIVIRVEAVSIEGGDT
                     LNRFRGALMSKPHIVGYQAAGEVVAVGEEVDNIKVGDKAVTTGAFGSHAELRAVAART
                     AWVIPPGMDVTLAAAIPVPFGTAHDCLFEFGRMQKGEIVLVQAGASGVGVAAIQLAAR
                     AGASMVMATASSDERLERLKALGLTHGINYTRDDVPTEVARLTDKHMADVIVDSVGGP
                     TLQSSILSLAYRGRVSMVGQAGREPMKVDVGSMMGGNRSLSGVFLGAEIATDRLHDNI
                     QQLIQDVADGSLKVVIDKTFALKDAAAAHRYIESRQAVGRVLLIP"
     gene            10478..11314
                     /locus_tag="VHN39_06910"
     CDS             10478..11314
                     /locus_tag="VHN39_06910"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HEX2816105.1"
                     /translation="MNIFFVCGAPKSGTTWLQRVLDAHPEVACSGEGHFITRFSAPVA
                     NVVNAYNRDLGWETKLVYDGQPYYGGVDQAEFDEIVRGFILARLRTRAGAETRWVGDK
                     TPGYTKHLSHLHRLFPAAKIIHIVRDPRDVAVSRMAFSKRAGATEACTPGAEQHRATL
                     EGAVRSWTEAVTAVDAFAQAHPGLVHELGYLDLHADPIGETERLFEFLGAPTPRVLME
                     QIVAATSFEALSGRRPGQEDQGSFLRKGLPGDWRTALDPASAELIVESCGPLMREKRL
                     AA"
     gene            11399..>12067
                     /locus_tag="VHN39_06915"
     CDS             11399..>12067
                     /locus_tag="VHN39_06915"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2816106.1"
                     /translation="MTRALVLGGGGPVGIAWESGLVAGLAQGGVDLGQADFTLGTSAG
                     SFVGVRLAMGESAATLADAIFADDKRSVRNAHRSSRRPPDLTNLMRLMAKAQEANRDP
                     AEARAEIGAYALAADTMTEEAFIESFGRSFTNLPEDAWPEKGFACTAVDAQSGDFQLW
                     TRESGVGVVRAVASSCSMPGVHPPVTLQGKRWFDGGGRSSTNADLAVGHEVVVIVAVR
                     LSDWT"
BASE COUNT         1829 a         3846 c         4364 g         2028 t
ORIGIN      
        1 cgccggccag gcggacgagc tcggcatagg cttcgccggg cgcggtggcg tacatggtgg
       61 ccggatcgcc gtcgaaccag ccggcgtagc cctcgtagat gccgcgcacc gaccagctga
      121 tcgcgccata gccctcgccg acctccagcg ccggcggcag cttgatctcc ctcatcaggg
      181 cgtaggcgct cttgccctcg ttcatgccgc gcacggtggc gtcgtgcaca tagaggatgg
      241 cgtcgcggta ctgggtcagg acccgctgga cgttggcggc gccgacaatc ggcacgccgt
      301 ggctcgggag cacgatctcc ggcttcagcg ccaggacctt gttgatcgat tccacgtagt
      361 tgagcgccgg ccgggtgggc gtgcccctga gcgtgtacat gttggggaac gacgcatagt
      421 agttgtcgcc gatgaagagc gccttcagct cggggatcca gacattgagc atgtccggag
      481 tctcgcccgg catggccagg cagtcgaagg tcaggtcgcc cagcctgaac ttgtattcct
      541 tgtcgaagag cacgtcggcg agcggcgggg cggcgtagtc gccggggttc atgttggccc
      601 ggccgccgcc gagcgcacca gccggggcgt tgtactgggc ggcgttgcgc acggcgaaga
      661 agcccgccag ccgggtctgg tagttgcgga actcgaccga attggcctgc tcgacgacgt
      721 gggttccggg ctccttccag agcggcacgc cgccggtgtg gtcgccgtgg ccgtgggtca
      781 ggatgatgtc cttcaccggg gccgtggaga ccgccttcaa cagggcgtgg tgacgctggg
      841 ccggaccggg cgtcgaggtg tcgatgatca ccacgccggc cttggtggtg accatgaagg
      901 tgttgccgaa gccggtggcc tggaagatcc gcccgccggc gaattccagc gccttggtct
      961 ggccggcgcc ggcgccggtg ggctgggccg cgcccaggcg ctcctgctgt tgggccatgg
     1021 cgggggcggc gaggcccaat gccagaagga ggggcgccag ggtcaaggcc aggatcgtgc
     1081 gcatctcgaa gctccccctt tggcggccac agtcgggtgg cgttccgaca gggtcaagcg
     1141 ggacggctca gacagccttt tgcgtcggcg caggcgcgtc gtccacggcg gcgatctggc
     1201 tgtgcaccag cgagaccatc gtcccgggat tggcggagac gacctgcacg cgggccccca
     1261 gctgcctggc gagcgcctcg acgatgctgg tgccgaggcc ggcctgcatg ctgtcggagt
     1321 ccttgggcat gccgaccccg tcgtcgcgga ccgacagggt ccagttgggt ccgtgggcct
     1381 gataggcgac caggatcttg cccttccggc ggcccgggaa ggcgtgcttc agggcgttga
     1441 tcaccagttc ggtgaccacc aggcccaggc tgaccgaggt cgaggccggg acgctgcttt
     1501 catcgacgct gatctcgatc gagagctgcg cgcggtggcg gatcatcgag gcgccgaggc
     1561 tatggcagag ctggctgaaa tagggctcca gcttgacgtc gcccaaggtc gaggcctcca
     1621 gctggcgctg cacctcggcc accgacatca cccgatcgtg ggcgtcgtgc agatgggtgc
     1681 gggcctccgg cgaggtgctg cgcctggcgc tttgcaggat gacgctggag atgatctgca
     1741 ggctgttggc cacccgatgc tgcagctcct gcagcaggat cgccttttcg cgcaccaagt
     1801 cgtccttctg ctgttcggcg gcgcgggcgt cggtggcgtc gaagaccgtc aacaggagcc
     1861 gcgggtcctg tccctcgccg tagcggagca tctgggcgtt gagcaccagg cggcgggtcc
     1921 cacggctcgc gctggcgagg tccatctcat aggcttcgat ctccgcgtcg ccggaggtgg
     1981 tggcgttcag cagcgagcga agttgcggca cgttccattc gcccttcccc agattgagga
     2041 tcaggcggcc cgcgacttcg tcagggtcca gttcgaaggc ggcgcagaag gagtcgctgg
     2101 ccgcgatgac ggtcagttcg ccatcaagaa gcacaagcgg cgcggttgaa gctgcgacca
     2161 tggccaacgc aaggttgagc ctcacgtcca ggtgcgacgg cggtggttgg gcagccatgg
     2221 ctgacccttc ctgcggatcc ggaggctcgc ggggcgcgag ccatagccgg tatcgaatgt
     2281 cgcgaaggtg aagcagcctt ccgcgcgggc tgcgggacgt cgaccagacg atcttatcat
     2341 atattaagcg cggctggagc ggattcgatc ctgcgccgcg ctgtgaatcg ggccttaggc
     2401 cggcggatca tccgtgggat gatgcggcat accgcacccg gagcaagtcc aagtgagcca
     2461 tgatccgcct gacgacgcgc ctgacgacgt gcgcgaagcc gcccggcgca aactggttgg
     2521 ccgggcgatg gtcattggcc tcgtcctgct ggtcgccgtc tatgccctct tcacgttcct
     2581 gggccggcgg tagccagcgc cctacttcgc ttcagccgca gccttcatgg tggccacgag
     2641 cgtcgtgaac tgggtggtgc ggcgcgcctt gtcggcggcc ttgtcggcgg cttcgtgctt
     2701 cggcagggcg tcggcgtcgt agaccagggt gtagagcagc ttggagtggc ccttgtcgat
     2761 cggctggatc tccacggtgc cgtggtagtc gatcgggctc ttgggctggg agtaggtgta
     2821 ggaccaggcg gtcttggcga ccaagagttc ctcgacccgg ccggcgatgg tgcgcaccga
     2881 ccccatctgg ccgtcgacgc cggcgaccgt gcaggtggtc ttgaaccagg ggccgatctg
     2941 gcagaagccg ttgatcttcg gccaggcctt gtcggccggg gcgttgatcg tggcctccag
     3001 cggcacggtc acgaaatcgg cggcgcgcgc ggcgccggcg gcgagtgtca cgcctgacag
     3061 agtgagggcc gcgagcgcgg cggcggcgat tttcaggtgc atgtcagttt cccccagatg
     3121 atttgaattg atttgcatga actctgccca tgcgacgcag cggaagccaa gagcctctta
     3181 agcggtcggc aggcgcaggg tggcgcggac gccggagtgg gcgcggtcgt agagcacttc
     3241 ggactcgagg ctcgtggcca tggccttgat cagccgcccg cccaggcccg tgccgtgaac
     3301 gactccgtcg gcggccatgc cgaccccatc gtcctcgacg gtgagggtta ggcccgcgcc
     3361 ctcgtcggtc agccgcacgc gaacctcgcc ggcctggccg cgacggtagg cgtacttgca
     3421 ggcgttggtg atcagctcgt tgacgatgac tcccaccgag accgccctgt cggtggccag
     3481 ccgcaccggg tcggaaacca ggctgagcgt gcggggcgcc gcggtggagg acagcgtgtc
     3541 ctcaagctcg cgcaccaggg cccccaggta gtcgttcatg tcgaccgatt ccacgtcctg
     3601 ggcggagtag agccggcggt ggacctgggt gatcgcctcg atacgccgct gggtatcctt
     3661 cagggccgtc cgcgcggcgc cgtccaaggc tgaggcctgc atctgcacga aggcggagac
     3721 cagctgcagg gaattggcca cccggtggtt gacctcgcgc agcagggctt ccaggcgctg
     3781 gttgccagcg accagctcgg ccttggcggc ctccaggtcg gcggtgcggg tgacgacctg
     3841 atcctcgagc ccggcgttca gctccgcgag ttcggcgcgc gagacgctga gctggcgggt
     3901 gtagcgcagg atcacccaga ccgagccgac cgccaggaag accgcgagcc cgcccgccgc
     3961 gatcgcgatc cggaagagct gcgcgatcgt cgcctcccga cgcagatcgc ggatggcgag
     4021 cttctgttct tcctcgtgga ccatctggtc ggtgagttgg cgtatggcgc gtgaggcccc
     4081 gacgccagcg tcccgataga actgcgaggt gtcggaatgg ccgtcacggg cgaaggccat
     4141 ggagaccgag atcgcctgct gctgggtgaa gaccagaggc cgcagcctgg cgatgttggc
     4201 ctgctgctgg gggttgtcag cggtcagcag ctggatgcgc aggatcgccc tggagagctg
     4261 agtggcggtc tgcctcacgg cctggtcgaa gctctcgtcg tgcgacagga ggtaaccgcg
     4321 ccgcgcggtc tcggtcctct cgtcgaggat gcggaagtcg gagatggcgc cttccacctg
     4381 ataggtgtgg gcgacctggg acgtgaaccc caggttctcg ttcatgacga tggcgccgag
     4441 caggcccacg cccaccaggg tcaggaagcc aagcgcgacg gcgcccacca ccacggcgtt
     4501 gaacgcgcgt tccgagcgga tggcgaggac cttgcggtca gcaaacatca gccggccagc
     4561 ttttcgagct ccgcagggtc gatgtcttcg ttggaataga cgttctgcac gtcgtcctcg
     4621 tcctccagcg actccaggag cttcatcagg gtcgccgcgc cgtcgccgga gatcggggtg
     4681 cgggccttgg gccgccaggc gatggtggtg gacttggcct cgccgagggc gacctccagg
     4741 gcggccgcga cctcggagag ctgctcgaag gcggtgtaga tcgtgtgccc gtcctcgtcg
     4801 gactccacgt cttcggcgcc ggcctcgatg gcggcgtcca tgatcttgtc ctcggagccg
     4861 gcggcggccg gatagacgat ctggccgacc cggtcccaca tgaaggccac agagccggtt
     4921 tcgcccaggt tgccgccgtt cttgccgaag gtggcgcgga cattggccgc ggcgcggttg
     4981 cggttgtcgg tcagcacctc gacgatcacg ccgacgccgc cgggcccgaa gccctcgtag
     5041 cggatttcct cgtaggcctc ggcgtcgccg cccgaggctt tcttgatggc ccggtcgatg
     5101 acgtccttgg gcagggattc gcccttggcg ttgttcaccg ccagccgcag gcgcgcgttc
     5161 atgttgggat cgggcaggcc cgacttggcc gccacggtga tctcgcggga aagcttggag
     5221 aacagcttcg agcgcgcgct gtcggcgcgg cccttgcggt gcatgatgtt cttgaacttg
     5281 gaatgtccgg ccattgtctg cttgagcttg gggtccgctt gagatgggtc aaggaagggg
     5341 aggcgcgttg cttctagcct tcggcggcgc cgtcaggaac ccctgccatg gaagagggtt
     5401 agccttgagg atgaaagagc gggaggctcc agcatgagcg agcaggtcat tgaggaggtc
     5461 gacgacctcg aacagccgac ggtggatggc gagatggttc actggatgga gcctcggccg
     5521 atgagcgtcg gcccggctgg cgtgtctgtg acggcgggcg cggccttcac gcttggcgtc
     5581 gtcgcggcgg tggcgacgct ggccctgttg cactggctgg gccccgagcg cgtgatcgag
     5641 gtccggcggc gtccgcgggc ctaaggtcgc tctcgcctta gctaacaacg catcgccaca
     5701 attcgctgca gaggcgaaaa ctttacgaca tctggcgccg ggcgtagctt catcttatcg
     5761 agcccaacga acacttgtta gcggctgggc gaatctggga gcgagatatg aagatcagca
     5821 atcgccttgt gggagttgcc gtgggggccc tgttggtcgc cggctcggct tccagcgcct
     5881 acgctggctt gattgggccg gatgtgaact atctcagctt tgcggacagt ccgttcgccg
     5941 gcttgtcatt cagctatttc cacctggaca cctttgagcc gggctcatcg gcgcccggag
     6001 cgactttttc agcgggattc atcgatggac caggcgccga aatcgactcg gtcgatggtc
     6061 aagggcccaa tggtcattcg ctattcagcg gaaacggcgc tgcgggaata accttcacgt
     6121 tcgacaaatc ggtacttggg caactcccca cagatgctgg catcgtttgg acagacggcg
     6181 acggtccgaa ccggaccttc gaagcgtttg atgaaaacgg caattcactc ggaacgatca
     6241 tcgactcgac gccactattc ttctcatccg gcggcgacgg cgatttccac aactatcggt
     6301 tcttcggtgc gaccaatgca ggcggcattt cctccatctt cattgcgaat gacggcggcg
     6361 gaatcgaagt cgatcacctg cagtacgggc ttctcaacgc aggtgtgccc gagccggcca
     6421 catgggggct gatgatcggc ggcttcggcc tcgccggcgc gaccctgcgt cgccgccggg
     6481 cggtggtctc agcttagacg atgtcgccag cacgccgccg gtccgcgaac cggcggcgtt
     6541 ttcgcgcgga ccgcctacgc caaatgaccc cggcctccgc taacccccaa tagcggacgc
     6601 cattcgcgac cgttttccga cattcatcgg gcctcctcca gcggctcgca gtcgatgcgg
     6661 ccgacgccgc cgtgctgcag caagtagacg gcgtcctggg ggacgtcctg caggcttgcc
     6721 tcgtcgcgat cgaggttggc gtagaggccg cgcagcaccc ggccggagat gccgtggctg
     6781 acggcgatga tgcggcgctg cggctccggc ggcaggccgg acagccagtc gccgacccgg
     6841 gcgctgaccg cctcgtagct ctcgccggtc gcggcgtcga aggcccagcc ggtcttgccg
     6901 aaggtgtccg gctcctcggc ttcaagctct gcgcgcagcc ggccgtcgta ggcgccccag
     6961 ctcatctcct tcaggcggtc gtcgagctcg accggcagac cgccgagctt ggctgagatc
     7021 agttcggcgg tggcgtgggc gcggccgagc gggctggaga caatgcgcca gccttcgggc
     7081 tcgcggatca ggtcgcgcaa caggcggccc accgccttgg cctggcggac gccgagctcg
     7141 gtgagcgggc tatccacatg gccctggatg cggcgttcgc ggttgaactc cgtctggccg
     7201 tgccgagcga ggtagatcac ctttttcggc ggaccacggg atgcgaggtc gatagcccgc
     7261 cgtccacggc gatggtctgg ccgttgacgt aggaggcgtc gtccgaggcc aggaacaggc
     7321 cggcgtgggc gatctcgtcg gggattccgt agcgggtcag cggattgagc tggccgatct
     7381 tgtcctcgtt gccgcgggcg cgggcgccgt cgaagatcgg cttggtcatg ccggtctcga
     7441 tcaggccggg cgcgatggcg ttgacgcgca cgccggtgcc gtagaactcg ttggccgaag
     7501 tctgggccag gctgatgacg cccgccttgg aggcggaata ggccggcccg ccggccccgg
     7561 agcggatgcc ggccacagag gcggtgcaga tgatcgagcc cttgccggtg gggatcatca
     7621 cgcgcgaggc gtgcttcacg gccaggaagg cgccgatcag gttgatccgc agaatctcgg
     7681 tccagtagtc cggggtctgt tcgtcgagcg gcatccagcc gccggagatg ccggcgttgg
     7741 cccagaccac gtcgagcgag ccgaactcgc cggtcgcgcg gtcgatgtag gatttcacga
     7801 aggcctcgtc gccggcgtcc ccctgcaagg ccacggccgt cccgccggct ttgccgatca
     7861 tggcggcggt ttcctcgacg ctgtcggcgc ggtcgacgca gaccattcgg gcgccctcgt
     7921 gggcgaacag caggctggcg gcgcggccga tgccgctgcc tgcgccggtg atgacggccg
     7981 tgcggccctg gagacgtccc atgattggtc ctctctaacg aagcaaaggc tgggctaacg
     8041 aagcaaaagg ttgggctaac ggagcagaag attggcgctg aggccggcgg cgatcagcag
     8101 gcagagtggc gaatagtaga ggcggttgag gcggtggaag ggcgtgccct cggtgtggcg
     8161 ccagaccggc gcgacataac ctgagagacc gcgaagcatg aagatcaggt cgagcgcggc
     8221 gtaggcgaag agggcggcgg cgacgaagtg cgccggcacg gcgtggcggc tcaccgcggc
     8281 caccagggcg gctgcgccca ggattgcccc ggccaccagc agggtcagcg gacgcgacgg
     8341 catccgcccg ccgcgggtgc ggccgatcac cgtggcgacg agaccggcct catcgcgccc
     8401 cggccagacc acgccgaagg cccagctgag gtgcagcagg ccgatcgccg ccagcaccgc
     8461 ggtcagggcg atggcgaggg ccaggttcat gcgctcgttt ctgctcggcc ggccgccgcg
     8521 cagatggcgt cgacgaaggt gtcgtagagg ccgggcggca ggtcgtggcc catgccgggg
     8581 atgatgcgca gctcggcgcc cggaatggcc gccgcggtga cctcgccgcc gaccttgggc
     8641 agcaggggat cgtcggcgcc gtgcagaacg acgaccggga gcttcagccc cttcagcgcc
     8701 tcggttcgat cgccgtcgcc gcgcaccgca gacatctggc gcgcgacgcc cggagggttg
     8761 aaggcgcgcg cgtgctcgga gatcacccga tcgcggatct catcatccgt ccacggatga
     8821 gctgggctgc cgatgatccg cgcgttgcgg attccatggg cgacataagc ctcgtagtcg
     8881 gctgcggggt ccggcgcggg ctgggtgagg acgccgccgg ccgcagggtg cgggttcatg
     8941 gtcgagggct cgccggtggt ggacatgatc gaggtcatcg acagcacccg gctcgcgtgg
     9001 tccagcgcga tgcgctggac gatcatgccg cccatggaga ccccggcgat gtgggccttg
     9061 ctcacgccag ccgcgtcaag cacggcgatg gcgtcattgg ccatgtcggc cagcgtgtac
     9121 ttgtccgtgg gccagctgga gaggccggtg tcgcggttgt cgaggcggat ggcgcggtaa
     9181 cccttggccg ccagcttctc gcagaaggcc tccggccagc gggtcatctg cgaacccagg
     9241 ccgttgatca gcaggacggt ctgcggctgg cccccatcgc gacttgggcc aaagctctgc
     9301 cattcgatct cgacctcgcc gttgcgagcg cggggcatgg gggctctcct tacgggatca
     9361 gcaggacgcg gccgacggcc tggcggcttt cgatgtagcg gtgggcggcg gcggcgtcct
     9421 tcagggcgaa ggtcttgtcg atgaccacct tgagggaccc gtcggccacg tcctggatca
     9481 gctgctggat gttgtcgtgg aggcggtcgg tggcgatttc ggcgcccaga aagacgccgg
     9541 agagcgagcg gttgccgccc atcatggagc ccacgtcgac cttcatcggc tcgcggcccg
     9601 cctggccgac catggagacg cggccgcggt aggcgagcga caggatcgaa gactgcaggg
     9661 tggggccgcc gaccgagtcg acgatcacgt cggccatgtg cttgtcggtc agccgcgcga
     9721 cctcggtcgg gacgtcgtcg cgggtgtagt tgatgccgtg ggtgaggccg agcgccttca
     9781 gccgctccag ccgctcgtcg gaggaggcgg tggccatcac catggaggcc ccggcccggg
     9841 ccgccagttg gatggccgcg acgccgacgc cggaagcccc ggcctggacc agcacgatct
     9901 cgcccttctg catgcggccg aattcgaaca ggcagtcgtg ggcggtgccg aagggcacgg
     9961 gaatggcggc ggcgagcgtc acgtccatgc cgggcgggat cacccaggcg gtgcgggcgg
    10021 ccaccgcgcg aagctcagcg tggctgccga aggcgccggt ggtgacggcc ttgtcgccga
    10081 ccttgatgtt gtcgacctcc tcgccgacgg ccaccacctc gccggcggcc tggtagccga
    10141 cgatgtgagg cttgctcatc agggcgccgc ggaagcggtt cagcgtgtcg ccgccctcga
    10201 tggagacggc ctcgacgcgg atgacgatgc ccttgcggtg gcagtccggg tcgggaacat
    10261 cctcatattt gaagacgtcc ggaccgccat tttcgtaata gaccgcagcc ttcatggtgg
    10321 cgtttcctca gccaaacttg ggctaaacat ctgtttggat tcacgcatcc cacggtcgat
    10381 ccgcaggtgc aatggcgaag caagcttggc cattaggatc gtgttgattt ttatgttcac
    10441 attatgagtc ggggtttggc ggcgagagtc tgcgagcgtg aacatcttct tcgtctgcgg
    10501 cgccccgaag tcggggacca cctggctgca gcgcgtcctg gacgcccatc ctgaagtcgc
    10561 ctgctcgggc gaggggcatt tcatcacccg cttcagcgcg ccggtcgcca atgtggtgaa
    10621 cgcctacaac cgcgacctcg gttgggaaac caagctggtc tacgatggcc agccctacta
    10681 cggcggcgtc gaccaggccg agttcgacga gattgtgcgc ggcttcatcc tggcccggct
    10741 gcgcacccgc gccggagccg aaacccgctg ggtcggcgac aagactcccg gctacacgaa
    10801 gcacctgagc cacctgcatc gcctgttccc cgcggcgaag atcatccaca tcgtgcggga
    10861 cccgcgcgac gtcgcggtct cgcggatggc gttctcgaaa cgcgccggcg ccaccgaagc
    10921 ctgcaccccg ggcgcggagc agcaccgggc gaccctggag ggcgccgtcc ggtcatggac
    10981 agaggcggtg accgccgtgg acgccttcgc gcaggcccac cccgggctgg ttcacgaact
    11041 cggctacctc gacctgcacg ccgaccccat cggagagacc gagcggctgt tcgagttcct
    11101 gggggcgccg acaccgaggg tgctgatgga gcagatcgtg gcggcgacct ccttcgaagc
    11161 cctgagcggc cggcggccgg ggcaggagga ccaggggtcc ttccttcgca agggcctgcc
    11221 gggggactgg cgaacggcgc tcgatccggc cagtgcggag ctgatcgttg agagctgcgg
    11281 cccgctgatg cgcgagaaac gcctcgccgc ctgaggcctg gcggagcggc tgaaggaagg
    11341 cgtggacagg tcgcgccgcg ccgtcgatgc tcgccgcaga ccgggagagg aagaggccat
    11401 gacgcgcgcg ctggtgctgg gcggcggcgg gccggtgggg atcgcctggg aaagcgggct
    11461 ggtcgcgggt cttgcgcagg gcggcgtcga tctgggccag gcggacttca cccttggcac
    11521 ctcggccgga tcctttgtcg gcgtgcggct ggcgatgggc gagagcgccg ccaccctggc
    11581 cgatgcgatc ttcgccgacg acaagcggtc ggtgcgcaac gcgcaccgca gcagccggcg
    11641 tcccccggac ctcaccaacc tcatgcggct gatggccaag gcgcaggagg ccaaccgcga
    11701 ccccgccgaa gcccgcgccg agatcggggc ctatgcgctg gcggccgaca ccatgaccga
    11761 ggaggcgttc atcgagagct tcggccggtc gttcacaaac ctgcctgagg acgcctggcc
    11821 ggagaagggc ttcgcctgca cggcggtgga cgcccagtcc ggagacttcc agctctggac
    11881 cagggagtcc ggcgtggggg tggtccgcgc ggtggcctcg agctgcagca tgccgggggt
    11941 ccatccgccg gtcaccttgc agggaaaacg ctggttcgat gggggcggac gatcgtccac
    12001 caacgccgac ctggcggtgg gccacgaggt ggtggtgatc gtcgcggtgc ggctgagcga
    12061 ctggacc
//
LOCUS       DATAJL010000357         2258 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_44952,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000357 DATAJL010000000
VERSION     DATAJL010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2258
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44952"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1035)
                     /locus_tag="VHN39_06920"
     CDS             complement(<1..1035)
                     /locus_tag="VHN39_06920"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2816107.1"
                     /translation="MRLAGMVAAAAVLALGSTGAADAASPKAAVHAWRLAHEKEILAD
                     FVSLLSMPNVATTVPDVEKNAAYISGLLEKRGFKTQLLTAEPGTPPSILAELKTPGAT
                     RTVVFYAHYDGQPISQKGWISTPFEPSMRTALPEAKPVDWKAAAALDPDLRLFARSAG
                     DDKGSIQALISAFDALKAAGIKPSVNIKLLYEGEEEQGSPHFAALVARHLELVRGDLL
                     IMGDGPMHQSGKQEINFGNRGITGFKATVYDPLKPLHDGHYGSWAPSPTVMIAALVMS
                     LRDDEGRILIPGIYDDVAPISAADRAALAALPDVETGLKTALGLGRNIGPPRLADGYM
                     APTLNVRAIHA"
     gene            1204..1743
                     /locus_tag="VHN39_06925"
     CDS             1204..1743
                     /locus_tag="VHN39_06925"
                     /inference="COORDINATES: protein motif:HMM:NF040152.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Pycsar system effector family protein"
                     /protein_id="HEX2816108.1"
                     /translation="MGQKPASGQPTFSADGVHLLRTTQQVQYQLSQMADQKASMLLGI
                     TFVIFTIAVGQARAGIPQPALLILGGAAFVAAVLAVVAVLPQIKPPPAAEGADNLLFF
                     GAFSRMTQDEFVASLLDTVGDTRSVYEAFARDIYQNGRVLAGKKYRLIGYAYRVLLIG
                     LILSFVAFVAPLLLKGMGR"
     gene            complement(1772..>2258)
                     /locus_tag="VHN39_06930"
     CDS             complement(1772..>2258)
                     /locus_tag="VHN39_06930"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX2816109.1"
                     /translation="LETLDRGCVVTDVRMPGMSGLELLGRLSPRKDDFPVIVLTGRAD
                     VAMAVNALKDGASDFIEKPFENEVLLSAVRAALARLNHEQARTALQTDQLQRIAGLSA
                     REREVLGGVVAGSSNKEIARALSISPRTVESYRANIMMKTQAGSLSELVRMAWLSRDA
                     L"
BASE COUNT          331 a          753 c          790 g          384 t
ORIGIN      
        1 ggcatggatg gcgcgcacgt tcagggtcgg cgccatgtag ccgtcggcca ggcgcggcgg
       61 gccgatattg cggccaaggc ccagggctgt cttcaggccg gtctcgacgt ccggcagggc
      121 ggccagcgcg gcccggtccg ccgccgagat cggggcgacg tcgtcgtaga tgccggggat
      181 caggatgcgg ccctcgtcgt cgcgcaggct catcaccagg gcggcgatca tcaccgtggg
      241 gctgggcgcc caggagccgt agtggccgtc gtgcaacggc ttgagcgggt catagaccgt
      301 ggccttgaag ccggtgatcc cgcggttgcc gaagttgatc tcctgcttgc ccgactggtg
      361 catcggcccg tcgcccatga tcaggaggtc gccgcgcacc agctccaggt gtctggccac
      421 cagggcggcg aagtgcggcg agccctgctc ctcctcgccc tcgtagagca gcttgatgtt
      481 caccgacggc ttgatgcctg cggccttcag ggcgtcgaag gccgagatca gcgcctggat
      541 cgagcccttg tcgtcgccgg ccgagcgggc gaacagccgc aagtcgggat ccagagccgc
      601 ggcggccttc cagtcgacgg gtttggcctc cggcagcgcc gtgcgcatcg acggctcgaa
      661 cggggtcgag atccagcctt tctggctgat cggctggccg tcgtagtggg cgtagaagac
      721 gacggtccgc gtggcccccg gcgttttcag ctcggccagg atcgagggcg gcgtgccggg
      781 ctcggcggtg agcagctggg tcttgaagcc gcgtttctcg agaaggcccg agatgtaggc
      841 ggcgttcttc tccacgtccg gcacggtggt ggccacgttc ggcatcgaaa gcaggctcac
      901 gaagtcggcg aggatctcct tctcatgcgc cagccgccag gcgtgaaccg cggccttcgg
      961 cgaggcggcg tcggccgcgc cggtcgatcc cagcgccagc accgcggccg ccgcaaccat
     1021 tcccgccaat ctcatcgcca tccccttgat acttcgccgt gagcatggcc cgccggcgcg
     1081 ccctaggcga gggcgatcgc acaggccgag attggcgccg ttcgaaattc gctgttcact
     1141 gtttccactg ggccgtgaca ccctgtgagg gtcgataatc agggggcgga cgatatggca
     1201 gaggtgggac aaaagccggc ctccggacag ccgacctttt cggccgacgg ggtgcacctg
     1261 ctgaggacca cccagcaggt ccagtaccag ctcagtcaga tggcggatca aaaggccagc
     1321 atgctgctgg gcatcacctt cgtgatcttc accatcgccg tgggacaggc gcgcgccggg
     1381 atcccgcagc cggcgctgct gatcctcggc ggggcggcct tcgtggccgc cgtgctggcg
     1441 gtggtggcgg tgctgccgca gatcaagccg ccgccggccg cggagggggc cgacaacctg
     1501 ctgttcttcg gcgccttcag ccggatgacg caggacgagt tcgtggccag cctgttggac
     1561 acagtcggcg acacccggag tgtctacgag gccttcgccc gcgacatcta ccagaacggg
     1621 cgggtgctgg cgggcaagaa gtatcggctg atcggctacg cctaccgggt gctgctgatt
     1681 gggttgatcc tgagttttgt ggccttcgtg gccccgctcc tgctgaaagg gatgggccgg
     1741 tgacccgccc ctggttcggg gcgctgaaag actagagggc gtccctggac agccaggcca
     1801 tccgcaccag ctctgacagg ctgccggctt gggtcttcat catgatgttg gcgcggtagg
     1861 attccacggt gcgcggactg atgctgagcg ccctggcgat ctccttgttg gacgagcccg
     1921 ccaccacgcc gcccaacacc tcgcgctcac gggccgagag gccggcgata cgctgaagct
     1981 ggtcggtctg gagcgccgtg cgcgcctgct cgtggttcag ccgcgccagc gccgccctca
     2041 ccgccgacag caggacttcg ttttcgaagg gcttttcaat gaagtcgctg gcgccgtcct
     2101 tcagggcgtt caccgccatc gccacgtcgg cccggccggt gagcacgatc accgggaaat
     2161 cgtccttccg cgggctcagc cggcccagca gctccaggcc gctcatgccg ggcatccgca
     2221 cgtcggtgac gacgcatccg cggtccaggg tctccagc
//
LOCUS       DATAJL010000358         1649 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_32190,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000358 DATAJL010000000
VERSION     DATAJL010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1649)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1649
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32190"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..661)
                     /locus_tag="VHN39_06935"
     CDS             complement(<1..661)
                     /locus_tag="VHN39_06935"
                     /inference="COORDINATES: protein motif:HMM:NF015056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HEX2816110.1"
                     /translation="MTDRLKPAVLALAAVLLAGATSGAAAATYALEPTPSTVAWGHYD
                     GTDKPALTIKSGDVVAVHTLLTNNPTGLKANGVPDDQIEFALRDVYDHVPASARGPGG
                     HVLTGPIAIEGAEPGDTLEIRIQKIDLAIPYAYNGFGAPNGLLRDDFPYRRTKIIPLD
                     RQRMVANFGPGIVIPLHPFFGSMGVAPPPEMGRWDSTPPTVIGGNMDNKELVAGTTLF
                     LP"
     gene            843..1328
                     /locus_tag="VHN39_06940"
     CDS             843..1328
                     /locus_tag="VHN39_06940"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2816111.1"
                     /translation="MAGPLNADTFRVERSTVIDAPADAIFPHIDDFHAWADWSPYEKM
                     DANLGKTFSGPARGKGAAYAWVGKKAGSGSMEITSSSPPSKIVIKLEFTKPFSAHNTA
                     EFTLEPQGKGTKVTWAMHGPNTLMSKVMGLFFSMDKLVGPQFDEGLASLKALTERALV
                     S"
     gene            complement(1325..>1649)
                     /locus_tag="VHN39_06945"
     CDS             complement(1325..>1649)
                     /locus_tag="VHN39_06945"
                     /inference="COORDINATES: protein motif:HMM:NF019040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1501 domain-containing protein"
                     /protein_id="HEX2816112.1"
                     /translation="VGPEAWKDSVVVVVSEFGRTFRENGDRGTDHGHGSVYWVLGGGV
                     KGGRLAGEQVQVVETSLNQNRDYAVLTDYRALLSGLFSRIYGLNATQLSQVFPGATPR
                     DLQLV"
BASE COUNT          273 a          525 c          577 g          274 t
ORIGIN      
        1 ccggcaggaa cagggtggtc ccggccacca gctccttatt gtccatgttg ccgccgatca
       61 ccgtgggcgg cgtggagtcc caacggccca tctccggcgg cggggccacg cccatgctgc
      121 cgaagaaagg atgcagcggg atgacgattc cagggccgaa gtttgcgacc atcctctgcc
      181 gatccagcgg gatgatcttg gtgcggcggt aggggaagtc gtcccgcagc agtccattgg
      241 gcgcgccgaa gccgttgtag gcgtagggga tcgcgagatc gatcttctgg atccggattt
      301 ccagggtgtc gccgggttcc gcgccttcga tcgcgatggg gcctgtgagc acgtggccgc
      361 ccgggccgcg ggctgaggct ggcacgtggt cgtagacatc gcgcagggcg aactcgatct
      421 ggtcgtcggg cacgccattg gccttcagcc ccgtggggtt gttggtcagg agcgtgtgga
      481 ccgccacgac gtcgcccgac ttgatggtca gcgcgggctt gtccgtcccg tcgtagtgac
      541 cccaggccac cgtcgacggc gtgggctcca gcgcataggt ggccgccgcc gcgccggacg
      601 tggcgcccgc gagcaagact gcggccaagg ccaggacagc gggtttcagg cgatcggtca
      661 tatggtgttt cccctcggcc gcaactggcg gcgggactat tgaaccggcc gcggcggcgc
      721 gcaagccagc tgacgtcgag gaaaggctga agcgggtctt gcccaaatag tttgcccgtc
      781 ctgtcggcgg cggggatgtt ggttcgtctt ccagatgcac agctggacga ggagcttcaa
      841 acatggccgg ccccctgaac gccgacacct tccgcgtgga gcgctcgacc gtgatcgacg
      901 ctccggcgga tgcgatcttc ccgcacatcg acgacttcca cgcctgggcg gactggtcgc
      961 cttacgagaa aatggacgcc aatctcggca agaccttctc gggcccagcc aggggcaagg
     1021 gcgcggccta cgcctgggtg ggcaagaagg ccggctcggg cagcatggag atcacgagct
     1081 cgagcccgcc ctcgaagatc gtgatcaaac tggagttcac caagccattc agcgcgcaca
     1141 acaccgccga attcaccttg gaaccgcagg ggaagggcac gaaggtgacc tgggccatgc
     1201 atgggccgaa caccctgatg tccaaggtga tggggctgtt cttcagcatg gataagctgg
     1261 tcgggcctca gttcgacgag gggctggcga gcctgaaggc cctgaccgag cgcgcgctgg
     1321 tgtcctagac gagctgcagg tccctcggcg tcgcgccggg gaagacctgg ctaagctggg
     1381 tggcgttcaa gccgtagatc cggctgaaga ggccgctcag cagggcgcgg tagtcggtca
     1441 gcacagcata gtcgcggttc tggttgaggc tggtctcgac gacctggacc tgctcgcccg
     1501 ccagccgccc gcctttgacc ccgccgccca gaacccagta gacgctgccg tggccgtggt
     1561 cggtgccgcg gtcgccgttc tcccggaagg tgcggccgaa ctcggagacc acgacgacga
     1621 cgctgtcctt ccaggcctcg ggcccgacc
//
LOCUS       DATAJL010000359         2716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45007,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000359 DATAJL010000000
VERSION     DATAJL010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45007"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..701
                     /locus_tag="VHN39_06950"
     CDS             <1..701
                     /locus_tag="VHN39_06950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816113.1"
                     /translation="LPLLVAAGFALASAIAVVAFVRESRPEPSTRAPHRPRIEGLKEA
                     WAHPVISRILLISFIVVVGFAGIEATYGLWTQARFGWGPRQIGLAFMGIGLLGAFCQG
                     YLSGRLVRRWGEPATLTGGLMLMGLGLVVQGLSPTWPVAILGFALVCIGQSICFPNLT
                     ALISRAAPPDRQGEMLGLNMSGMALARIGGPVLAGELFSVVAPGAPFAMAALLILPGL
                     WFAGQVRKRVHLTA"
     gene            complement(729..920)
                     /locus_tag="VHN39_06955"
     CDS             complement(729..920)
                     /locus_tag="VHN39_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816114.1"
                     /translation="MSSIAAVSQTPPSIPVAPVKPVDNDKPGVASAPDHDGDKDDGAA
                     ASVSAAKPPGQGKIVDIKA"
     gene            1151..1354
                     /gene="rpmI"
                     /locus_tag="VHN39_06960"
     CDS             1151..1354
                     /gene="rpmI"
                     /locus_tag="VHN39_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEX2816115.1"
                     /translation="MPKLKTKSGAKKRFKITATGKIKAGVAGKRHRLLSHNAKYIRQN
                     RGTKVMSASDAKIIKIFLPYGLS"
     gene            1368..1724
                     /gene="rplT"
                     /locus_tag="VHN39_06965"
     CDS             1368..1724
                     /gene="rplT"
                     /locus_tag="VHN39_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEX2816116.1"
                     /translation="MARVKRGVTAHARHKKVLEQAKGFYGRRKNTIRTAKAAVDKAGQ
                     YAYRDRKVRKRAFRSLWIQRINAAAREEGMTYARFIHGLDLAGIEMDRKVLADIAGAD
                     PTAFKAIAEKVRAALA"
     gene            1840..>2716
                     /locus_tag="VHN39_06970"
     CDS             1840..>2716
                     /locus_tag="VHN39_06970"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEX2816117.1"
                     /translation="MTDLTKLEAELSAAVAAAPDVAALEAVRVAALGKSGSISELLKT
                     LGAMSPDERREQGPAINGLRDRIAGAIGGRKTALEAAELDTKLATEHVDLTLPPPPER
                     RGRVHPTMQVQDEMIAIFAEMGFGLAEGPDIEDDFHNFTALNFPPKHPAREMHDTFWL
                     PEDEHGERKVLRTHTSPVQIRTMQQGQNDKLPSWIATSQTPPIRIVVPGRTYRSDSDA
                     THTPMFHQMEGLVIDKAIHMGHLKWTLETFISRYFETPLVETRFRPHHFPFTEPSAEM
                     DVRCDRSGGDVKIGQG"
BASE COUNT          447 a          953 c          887 g          429 t
ORIGIN      
        1 agctgccgct cctcgtcgcg gcgggcttcg cgctggcctc ggcgatcgcc gtggtggcct
       61 tcgtgcgcga gagccggccg gagccctcca cgcgcgcgcc gcaccggccg cggatcgagg
      121 gcctgaagga ggcctgggcg cacccggtga tcagccgcat cctgctgatc agcttcatcg
      181 tggtcgtggg cttcgcgggc atcgaggcca cctatggcct ctggacccag gcgcgcttcg
      241 gctgggggcc ccggcagatc ggcctcgcct tcatgggcat cggcctgctc ggcgccttct
      301 gccagggcta tctttcgggg cggctggtgc gccgctgggg cgagccggcg acgctgaccg
      361 gcggtctgat gctcatggga ctgggcctgg tcgtccaggg cctgtcgccc acctggcctg
      421 tggccattct cggcttcgcg ctcgtctgca tcggccagtc gatctgcttc ccgaacctga
      481 cggcgctgat ctcgcgggcc gcgccgcctg accgccaggg cgagatgctg ggcctcaaca
      541 tgagcggcat ggcgctggcc cgcatcggcg ggccggtgct ggccggcgag ctgttctcgg
      601 tggtggcccc cggcgcgccc ttcgccatgg ccgcgctgct gatcctgccc gggctatggt
      661 tcgccgggca ggtcaggaag cgcgttcatc tgacggcgta acccgccggc ggtcggaggg
      721 gttcggacct aggccttgat gtcgacgatc ttgccctggc ccggaggctt ggccgcggag
      781 acggacgcgg cggcgccatc gtccttgtcg ccgtcgtggt ccggagcgga cgcgacgccc
      841 ggcttgtcgt tgtcgacagg cttgacgggg gcgacgggaa tggaaggcgg cgtctggctg
      901 acggcggcga tgctcgacat tctggtctcc aacggccgca tttcgcgacc tatgcgccac
      961 cttagggcat cgcgcttaac cgcccgtttc gcgggggtga ataatcaggt ggccgcccta
     1021 caccgccgcg accttgcttt tccgccccat ttcccctact agccgctccc ttcggagccg
     1081 cctggcccat ggcatgccag ggcggctcat caatacacca gaggacgggg cttcgttgct
     1141 ccgcagagaa atgccgaaac tgaagacgaa gtcgggcgcc aaaaagcgct tcaaaatcac
     1201 tgcgactggg aagatcaagg ccggtgtggc tggcaagcgc caccgcctgc tctcccacaa
     1261 cgccaagtac atccgtcaga accgtgggac gaaggtgatg agcgcgtcgg acgcgaaaat
     1321 catcaagatc ttcctcccct acggccttag ctaaggagcg ctgacagatg gctcgcgtaa
     1381 agaggggcgt caccgcccac gcacgtcaca agaaggttct cgagcaagcc aagggcttct
     1441 acgggcgccg caagaacacc atccgcaccg ccaaggcggc cgtggacaag gccggccagt
     1501 acgcctaccg cgaccgcaag gtccgcaagc gcgcgttccg ctcgctgtgg atccagcgga
     1561 tcaacgccgc ggcgcgcgaa gaaggaatga cctacgcgcg atttatccac ggccttgacc
     1621 tggccgggat cgaaatggac cgcaaggtcc tcgccgatat cgccggcgcc gatccgaccg
     1681 ccttcaaggc catcgcagag aaggttcgcg ccgcgctggc ttgatcgctg aaggtcacct
     1741 agacctcgaa gcattccaaa gccctccggc cgaaccgccg gggggctttt tgctgtcccc
     1801 cttcaccccg tgaagtgcgc aggctaggac accgcccaca tgactgatct gaccaaactc
     1861 gaggcggagc tttccgccgc cgtcgccgcc gcgcccgacg tggccgccct ggaagccgtg
     1921 cgcgtagccg cgttgggcaa gtccgggtcc atttccgagc tgctcaagac cctgggcgcc
     1981 atgagccccg acgagcggcg cgaacagggc ccggcgatca acggcctgcg cgaccgcatc
     2041 gccggcgcca taggcgggcg caagaccgcg ctcgaggccg cggagctcga taccaagctc
     2101 gccactgaac atgtggacct gaccctgccg ccgccgcccg agcgccgcgg ccgggtgcac
     2161 ccgaccatgc aggtgcagga cgagatgatc gccatcttcg ccgagatggg cttcggcctg
     2221 gcggaaggcc ccgacattga ggacgatttc cacaacttca cggcgctgaa cttcccgccc
     2281 aagcatccgg cgcgggagat gcacgacact ttctggctgc ccgaggacga gcacggcgag
     2341 cgcaaggtgc tgcgcaccca caccagcccc gtgcagatcc gcaccatgca gcagggccag
     2401 aacgacaagc tgccgtcctg gatcgccacc agccagacgc cgccgatccg cattgtcgtg
     2461 cccggccgca cctaccgctc ggactcggac gccacccaca cgccaatgtt ccatcagatg
     2521 gagggcctgg tgatcgacaa ggccatccac atggggcacc tgaagtggac gctggagacc
     2581 ttcatctctc gttacttcga gacgccgctg gtggagaccc gcttccgccc acaccacttc
     2641 cccttcaccg agccgagcgc cgagatggac gtgcgctgcg accgctccgg cggtgacgtg
     2701 aagatcggcc agggcg
//
LOCUS       DATAJL010000360         2820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45015,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000360 DATAJL010000000
VERSION     DATAJL010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45015"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..769
                     /locus_tag="VHN39_06975"
     CDS             <1..769
                     /locus_tag="VHN39_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2816118.1"
                     /translation="PTVFGGRVMAVALDNTLLTFDAATGAPGWTYQALSESARILSSS
                     SPAVSGDTVVASFGSGELVALRTANGNDLWNVALSQASRTSALSEIRDIAGRPVIYNG
                     DVFAVSHSGVFAATDLRTGQARWTLPVVGITSPLPAGDVVYVVATDGKLICAVRETGQ
                     IYWIHDMNAGYVPKKKGGLWGIGARTIPKPLWSNPILVNSRLVLVSSAGQLEALNAKT
                     GAVERTVELGAPALIGPIVAGNLIYVVTDNAQLIALR"
     gene            793..2391
                     /gene="der"
                     /locus_tag="VHN39_06980"
     CDS             793..2391
                     /gene="der"
                     /locus_tag="VHN39_06980"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEX2816119.1"
                     /translation="MTLKLAIVGRPNVGKSTLFNRLAGRKLAIVDDQPGVTRDRRFGT
                     GRIGDLDLELIDTAGFEDLTDESLEARMRVQTELAIDEADVALFVIDSREGVTPIDEV
                     FAEILRRRDMPVVLAANKAEGRAGESGILEAFGLGLGEPIPISAEHGEGMADLYAALI
                     AVAPDQSDHDDEDGDKAVKIAIVGRPNAGKSTLVNKLIGEDRMLTGPEAGITRDAIPV
                     DWTWDDKAVRLVDTAGLRRKAKVQEKLEKLSTHDSIRAITFAEIVILVMDATHPFEIQ
                     DLQIADLVEREGRGLVFVLAKWDLVEDQQATLAHIVDEAQRQLPQVRGAPIIALSAET
                     GRGLEKLMPAVFKTHADWSTKVKTRDLNDWLKMATERHPPPAISGRRIKPKYMAQTKS
                     RPPTFVLFASRADQLPESYRRYLVNSIRESFELPGVPIRITVKSNKNPYAEGEEKSGQ
                     GSARAPFGEVLPKTGLKAKTRIAANAKAKAGAAGKPKLFGKAKPQGPKAKAGSPRGRA
                     AKLLRPGTKPKRASRPPSSGRRPR"
     gene            complement(2339..>2820)
                     /locus_tag="VHN39_06985"
     CDS             complement(2339..>2820)
                     /locus_tag="VHN39_06985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2816120.1"
                     /translation="LVHAAGMLGPMTPVSHIEPKQWDRVVAVNLTATYRLIRTTEPLL
                     RASEAGRAIFLTTGRVARPKAFWGPYGVTKAGMEHMVRTWADELEQTTVRAVLLDPNT
                     MRTRMRAEAMPGEDPATVTDPSEIGPLIVELAQADLGLPHANVVFAHWKAAGTLASA"
BASE COUNT          477 a          958 c          958 g          427 t
ORIGIN      
        1 cccgaccgta ttcggcggcc gcgtgatggc cgtggcgctc gacaacacgc tgctgacctt
       61 cgacgccgcc accggcgccc ctggctggac ctatcaggct ctgtcggaat cggcgcggat
      121 tctgtcctcg tcgagcccgg cggtctccgg cgacaccgtg gtggcctcct tcggctccgg
      181 tgagctggtg gcgctacgca ccgccaacgg caacgacctg tggaacgtgg cgctgtcgca
      241 ggcgagccgc accagcgcgc tctccgaaat tcgcgacatc gccgggagac cggtgatcta
      301 caacggcgac gtcttcgcgg tcagccactc cggcgttttc gccgcgaccg acctgcgcac
      361 cggccaggcg cgctggacgc ttccggtggt gggcatcacc tcgccgcttc cggccggtga
      421 cgtggtctat gtggtcgcca ccgacggcaa gctgatctgc gcggtccgcg agaccggcca
      481 gatttactgg attcacgaca tgaacgccgg ctacgtgccc aagaagaagg gcggcctctg
      541 gggtatcggg gcgcgtacga tccccaagcc gctgtggtcg aaccccattc tggtcaacag
      601 tcgcctggtg ctggtgtcct ccgccggtca gctcgaagcg ctcaacgcca agaccggcgc
      661 ggtcgagcgt acggtggagc ttggcgcacc ggcgctgatc gggccgatcg tggcgggcaa
      721 tctgatctat gtggtcacgg acaacgccca gctgatcgcg ctgcgctgag cgtttaagtc
      781 tatgctgacc tcatgacgct taaactcgcg atcgtcgggc gtcccaacgt cggcaagtcc
      841 acgctgttca accggctggc gggcaggaag ctcgccatcg tcgacgacca gccgggcgtg
      901 acccgcgacc ggcgcttcgg cacggggcgc atcggcgacc tcgatctgga gctgatcgac
      961 accgccggct tcgaggacct caccgacgag agcctggaag cgcgcatgcg tgtccagacc
     1021 gagctcgcca tcgacgaggc tgacgtggcg ctctttgtca tcgacagccg cgagggcgtg
     1081 acgcccatcg acgaggtgtt cgccgagatc ctgcgccgcc gcgacatgcc cgtggtgctg
     1141 gctgcgaaca aggccgaggg ccgggccggc gagagcggca tcctggaggc cttcggtctc
     1201 ggtctcggcg aacccattcc gatctccgcc gagcacggcg agggcatggc cgacctctac
     1261 gcggccctga tcgccgtcgc gccggatcag agcgaccatg atgacgagga cggcgacaag
     1321 gcggtgaaga tcgccatcgt cgggcgaccc aacgccggca agtcgacgct ggtcaacaag
     1381 ctgatcggcg aagaccgcat gctgaccggc cccgaggccg gcatcacccg cgacgccatc
     1441 ccggtcgact ggacctggga cgacaaggcc gtgcggctgg tggacaccgc ggggcttcgt
     1501 cgaaaagcga aggtgcagga gaagctggag aagctctcca cccacgattc catccgcgcc
     1561 atcaccttcg ccgagatcgt catcctggtg atggacgcca cgcacccgtt tgagatccag
     1621 gacctgcaga tcgccgatct tgttgagcgc gagggccgtg gactggtctt tgtcctggcc
     1681 aagtgggacc tggtggagga tcagcaggcc accctggccc atatcgtcga cgaggcgcag
     1741 cgccagttgc cgcaggtgcg cggcgcaccg atcatcgctc tgtcggccga gaccggccgt
     1801 gggcttgaga agctgatgcc ggcggtgttc aagacccacg ccgactggtc gaccaaggtg
     1861 aagacccgcg acctcaacga ctggctgaag atggccaccg agcgtcaccc gccgccggct
     1921 atcagcggcc ggcggatcaa gcccaaatat atggcccaga ccaagtcgcg gccgccaacc
     1981 ttcgtgctgt tcgccagccg cgccgaccaa cttcccgaga gctatcgccg ttacctggtc
     2041 aattcgatcc gcgagagctt cgagctgccc ggcgtgccga tccgcatcac ggtgaagtcc
     2101 aacaagaacc cctacgccga gggcgaggag aagtcggggc agggctcagc cagggcgccc
     2161 tttggtgagg tgctgcccaa gaccggcctg aaagccaaaa cgcggatcgc cgccaacgcc
     2221 aaggccaagg cgggcgcggc gggcaagccc aagctgttcg gcaaggcgaa accccagggg
     2281 cccaaggcca aggccggcag tccgcgcggg cgggccgcca agctgctgcg gcccggaact
     2341 aagccgaagc gagcgtcccg gccgccttcc agtgggcgaa gaccacgtta gcgtgcggca
     2401 ggccgaggtc ggcctgcgcc agctcgacga tcagcggacc gatctccgag ggatcggtga
     2461 cggtcgccgg atcctcgcct ggcatcgcct ccgcccgcat cctggtgcgc atggtgttgg
     2521 ggtcgagcag cacagcgcgg acggtggtct gctccagttc gtcggcccag gtgcggacca
     2581 tgtgctccat cccggccttg gtgacgccgt aggggcccca gaaggccttc gggcgggcga
     2641 cgcggccggt ggtcaggaag atggcccgcc cggcctcgga ggcccgaagc agcggctcgg
     2701 tggtgcggat caggcggtag gtcgcggtca ggttcaccgc caccacccgg tcccactgtt
     2761 tgggctcgat gtggctgacc ggcgtcatgg gccccagcat ccccgcggca tggaccagga
//
LOCUS       DATAJL010000361         1818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_80784,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000361 DATAJL010000000
VERSION     DATAJL010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80784"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..412
                     /locus_tag="VHN39_06990"
     CDS             <1..412
                     /locus_tag="VHN39_06990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816121.1"
                     /translation="LTNKARHPCLLVVTTGGKMVTSSVTVPKARVEMQDFIDLQGASG
                     ASYRFRRRAEGASHLPTAGNYVLIQETGAGFKVLTVGASIDLSLTRPPGKLRAGRRPM
                     HLFTRLNVARSVRAFEHQDLVAHYRPGEVVTEQA"
     gene            complement(436..1650)
                     /locus_tag="VHN39_06995"
     CDS             complement(436..1650)
                     /locus_tag="VHN39_06995"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2816122.1"
                     /translation="MFDVAARPESLLCPDGDAAPLRAEAARTFHLIDTTMMYAPRSGG
                     VKRYLTAKRTWLERRRPDIRHTLVVPGKATRAEEPGLYTVSAARLPFGDGYRMPASPN
                     KWSTVLQLLDPDIIEAGDVFVPGHAAMEAGQTLGVPVVGVCHTDAPTLAALHLGDWAE
                     QPTLNFWAQSYQRFDHVVAPSKHTAQRLTDAGVDRVSVHPLGVDLELFHPARGNREAL
                     LKRLNFPADSRLLVFAGRPAREKNIDSMVAAVEMLGDPYRLVLIGAGKDAKYPSRVAC
                     MDFERQPERLAAVIASCDAFLHANENEIFGLVVLEAMAAGLPVVGPNKGGVGELLDEA
                     VGQLSNGVDPASLAEAVEALFARDVEALKLAARRRAETRHSWDHTFEGLTRLYTQLLA
                     RSPHRAPLRLSA"
BASE COUNT          281 a          597 c          652 g          288 t
ORIGIN      
        1 tctcaccaat aaagcgcgtc atccttgcct tcttgttgtc acgacaggcg ggaagatggt
       61 gacctcatcc gtgacagttc ccaaggcaag agtcgaaatg caggacttca tcgacctcca
      121 aggcgcatcc ggggcctcct accgcttccg gcgccgggcc gaaggcgcct cacatctgcc
      181 gacggcggga aactatgtgc tgatccagga gaccggcgcg ggattcaagg tgctgacggt
      241 gggcgcctcg atcgacctgt cgctgacacg gccgccgggg aagctgcgcg ccgggcgcag
      301 gccgatgcac ctgttcaccc ggctgaacgt cgcgcggtca gtgcgcgcgt tcgagcacca
      361 ggaccttgtg gcgcactacc gcccgggcga ggtggtgacc gaacaggcct agcgtctgct
      421 tcgacaggcg cgggcctagg cgctgagccg caggggcgcg cgatgggggc tgcgggccag
      481 gagctgggtg tagagccggg tcaggccctc gaaggtgtgg tcccaactgt gtcgggtctc
      541 ggcgcgccgc cgcgcggcga gtttcaaagc ctcgacgtca cgcgcgaaca acgcctcgac
      601 ggcttcggcc aggcttgccg gatcgacgcc gttcgagagc tggcccacgg cctcgtccag
      661 tagttcgccg acgccgccct tgttggggcc gaccaccggc aggccggcgg ccatggcctc
      721 cagaaccacc aagccgaaga tctcgttctc gttggcgtgc aggaaggcgt cgcaactggc
      781 gatcacggcg gccagccgct ccggctggcg ctcgaagtcc atgcaggcca cgcgggacgg
      841 gtacttggcg tccttgccgg cgccgatcag caccaggcgg taggggtcgc ccagcatctc
      901 cacggcggcg accatggaat cgatgttctt ttcccgcgcc ggacgcccgg cgaagaccag
      961 caggcgggag tccgccggga aattcaggcg cttcagcagg gcctcgcggt tcccacgggc
     1021 cggatggaag agttccaggt cgacgcccag gggatggacg ctgacccggt cgacgccggc
     1081 gtcggttagg cgctgggcgg tgtgtttgct gggcgccacg acatggtcga agcgctggta
     1141 tgactgggcc cagaagttga gcgtcggctg ctcggcccaa tcgcccagat gcagcgccgc
     1201 cagggtcggg gcgtcggtgt ggcagacccc gaccacgggc acgcccagag tctggcccgc
     1261 ctccatggcc gcgtggccgg ggacgaagac gtcgccggcc tcgatgatgt ccgggtccag
     1321 cagctgcagg accgtcgacc atttgttggg gctggcgggc atccggtagc cgtcgccgaa
     1381 gggcaacctg gcggccgaga cggtgtagag gccgggctcc tcggcgcggg tcgccttgcc
     1441 gggcaccacc agggtatggc ggatgtccgg ccggcgccgt tccagccagg tgcgcttggc
     1501 ggtgaggtag cgcttcaccc cgccggaacg gggcgcgtac atcatggtgg tgtcgatcag
     1561 gtggaaggtg cgggcggcct ccgcgcgcag gggcgcggcg tcgccatccg gacacagcag
     1621 gctttccggt ctcgcagcga cgtcgaacaa gtggtcagcc cttctatcct cgaaccccat
     1681 cggcaaggcc cccgtggagg aggcaacgga cagcgaggct gttcgttgcc gcccacgctt
     1741 gcccagcgcc gtgcggttta ccgatttttt ccagatcctg gacaggggac cggcgccttt
     1801 ctgcgaacgc tagtgtcc
//
LOCUS       DATAJL010000362         2985 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_6459,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000362 DATAJL010000000
VERSION     DATAJL010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2985
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6459"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..946)
                     /gene="trpB"
                     /locus_tag="VHN39_07000"
     CDS             complement(<1..946)
                     /gene="trpB"
                     /locus_tag="VHN39_07000"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEX2816123.1"
                     /translation="MPNDYTAYPDVDGRFGAFGGRYVPETLMPLVHELDAAYRAAKAD
                     PAFKAELDGFLKHYVGRPSPLYFAERLTRHFGGAKIYLKREELNHTGSHKINNCMGQI
                     LLAMRMGKTRIIAETGAGQHGVATATVCARFGLPCVVYMGAVDVERQKPNVFRMNLLG
                     AEVRPVTSGSATLKDATNEALRDWVTNVEDTYYLIGSVVGMHPYPEMVRDFQSVIGTE
                     VREQIMEAEGRLPDAVVACVGGGSNAMGLFHPFLNDESVRLYGVEAAGEGVNTGRHAA
                     AINGGRPGVLHGSLSYLLQDAEGQVTEAHSISAGLDYPG"
     gene            complement(987..1628)
                     /locus_tag="VHN39_07005"
     CDS             complement(987..1628)
                     /locus_tag="VHN39_07005"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004640 - phosphoribosylanthranilate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEX2816124.1"
                     /translation="MGVQTKICGISTSEAVAAALEGGAAFLGFMFFEKSPRNLAPEAA
                     WRLAQPVRGKARVVAVLVDPSDAEADRIAQILQPDLIQLHGKETPARARAIGQRTGAG
                     IIKVLPVSEAADLAAAADFETVVEHLMFDTKPAKDAERPGGSGQAFDWTLLSDRRFER
                     PWFLAGGLDPWNLTEAVQQSGAPLLDVSSGVERGAGLKDPALIRAFLDAAKRV"
     gene            complement(1675..2283)
                     /locus_tag="VHN39_07010"
     CDS             complement(1675..2283)
                     /locus_tag="VHN39_07010"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX2816125.1"
                     /translation="MLPQSIHPSTILELESELGERTFIGGVNCRIRLGANVRFEAALR
                     IMGDVVNATLEIGDDCVIGGVIRLERGDGGVIRIGAGTTFNQVGLSMHEAGEINIGRD
                     CMFSTDIHMDPSDMHPIFDRATGERLNPAQDINIGDHVWLGTRVLVLKGARIGSGTIV
                     GAGSIVSGTLPGDVLAVGSPAKVVRENVVWTRDLDQAPPLRA"
     gene            complement(2305..2763)
                     /gene="mscL"
                     /locus_tag="VHN39_07015"
     CDS             complement(2305..2763)
                     /gene="mscL"
                     /locus_tag="VHN39_07015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEX2816126.1"
                     /translation="MSAPRIRLGIFGEFREFIARGNVIDLAVGVIVGAAFNDIVKSLV
                     DNVVMPPIGLMLSGIDFAHLQWVLRPDDPLTKANELVAIQYGLFINTLIKFVIVAWVV
                     FLLVKGVNAIRRKDAETPNKTPPAPAPQEALLIEIRDILKAQGDAPPQQL"
     gene            complement(2771..>2985)
                     /locus_tag="VHN39_07020"
     CDS             complement(2771..>2985)
                     /locus_tag="VHN39_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0030527 - structural constituent of
                     chromatin [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEX2816127.1"
                     /translation="VGVVLERMIQALETGGRVELRGFGALSVRSREARAGRNPRTGEP
                     VDVRAKHVPFFKSGKELRERLNLTDE"
BASE COUNT          475 a          994 c         1022 g          494 t
ORIGIN      
        1 tgcccggata gtcgaggcca gcggagatcg aatgggcctc ggtgacctgg ccctcggcgt
       61 cttgaaggag atagctcagg ctgccgtgca ggacgcctgg gcggccgcca ttgatcgccg
      121 cggcatggcg gccggtgttg acgccctcgc ccgcggcctc gacgccgtag aggcgcacgg
      181 actcgtcatt caggaacgga tggaagaggc ccatggcgtt ggagccgccg ccgacgcagg
      241 cgaccacggc atcgggaagc cggccctcgg cttccatgat ctgctcgcga acctcggtcc
      301 cgatcaccga ctggaagtcg cggaccatct ccggataggg gtgcatcccg accaccgagc
      361 cgatcagata gtaggtgtct tcgacgttgg tgacccagtc gcgcagggcc tcgttcgtgg
      421 cgtccttgag ggtcgccgag cctgaagtca ccggccgcac ttccgcgccc agcaggttca
      481 tgcggaagac gttgggcttc tgccgctcca cgtcgacggc gcccatatag accacgcagg
      541 gcaggccgaa gcgggcgcag acggtggcgg tggccacgcc atgctggccc gcgccggtct
      601 cggcgatgat ccgcgtcttg cccatccgca tggccagcag gatctggccc atgcagttgt
      661 tgatcttgtg cgagcccgtg tgatttagct cctcgcgctt cagatagatt ttcgccccgc
      721 caaagtgccg ggtcagccgc tcggcgaaat agagcggcga ggggcggccc acgtagtgct
      781 tcaggaaccc gtcgagctcg gccttgaagg cgggatcggc cttggccgcg cggtaggcgg
      841 cgtccagctc atggaccagc ggcatcaggg tttcgggcac atagcgcccg ccaaaggcgc
      901 cgaagcggcc gtcgacgtcc ggataggccg tgtagtcgtt gggaatgccc ggcgacgttt
      961 tgggaggcgc gttcacgagg gtttcttcag acgcgtttgg cggcgtcgag gaacgcccgg
     1021 atcaaggcgg ggtcctttag tccggctccg cgctccacgc cagaggaaac gtccagcagg
     1081 ggtgcgccgg attgctgcac agcttccgtc aggttccagg gatcgaggcc gccggccagg
     1141 aaccagggac gctcgaacct gcggtctgag agcagggtcc agtcgaaggc ctggcccgaa
     1201 ccgccgggcc gctcggcgtc cttggccggc ttggtgtcga acatcagatg ctcgaccacc
     1261 gtctcgaaat cagccgccgc ggcgaggtcg gccgcttcgg acaccggcag gaccttgatg
     1321 atcccggcgc cggtccgctg gccgatggcg cgggcgcggg ccggcgtctc cttgccgtgc
     1381 agctggatca gatctggctg gaggatctgc gcgatccggt cggcctccgc gtcgctggga
     1441 tcgaccagca cggccaccac cctggccttg cccctgacgg gctgggccag ccgccaagcg
     1501 gcctccggcg cgagatttcg cgggcttttc tcgaagaaca tgaagcccag aaatgcggcc
     1561 ccgccctcca gggccgcggc cacggcctcg gaggtgctga tcccgcagat cttggtctgg
     1621 acgcccatgg ccgtgattag ggggctatgc gcccacgccg caagggcgaa ggcgtcaggc
     1681 gcgcaacggc ggcgcctggt ccaggtcgcg ggtccagacg acgttctcgc gcaccacctt
     1741 ggccggcgag cccacggcca gcacatcgcc cggtagggtt ccggagacga tggagcccgc
     1801 gccgacgatg gttccggatc cgatccgcgc ccccttgagc accagcaccc gcgtgcccag
     1861 ccacacatgg tcgccaatgt tgatatcctg cgcagggttc agccgctcgc cggtcgcccg
     1921 gtcgaagatc gggtgcatgt cgctgggatc catgtggatg tccgtggaga acatgcagtc
     1981 ccggccgatg ttgatctcac cggcctcgtg catcgacagg ccgacctggt tgaaggtcgt
     2041 gccggctccg atgcggatca ccccgccgtc gccgcgttcg aggcggatga ctccgccgat
     2101 gacgcagtcg tcgccgatct ccagcgtggc gttgacgacg tcgcccatga tgcgcagcgc
     2161 ggcctcgaag cgcacgttcg cgcccagccg gatgcggcag ttgacgccgc cgatgaaggt
     2221 gcgctcgccg agctcgctct caagctccag gatcgtgctc ggatggatgc tctgcggcag
     2281 cacgggctcc gcctcgtagg ttgatcagag ctgttgcggc ggcgcgtcgc cttgggcctt
     2341 gaggatgtcg cggatctcaa tcagcagcgc ctcctgcggg gccggcgccg gcggggtctt
     2401 gttgggagtt tcggcgtcct tgcggcggat ggcgttcacg cccttgacca gcaggaacac
     2461 cacccaggcg acgatcacga acttgatcag ggtgttgatg aacaggccat actggatggc
     2521 caccagctca ttagccttgg tcagggggtc gtcgggcctg agcacccact gcaggtgggc
     2581 gaaatcgatg cccgacagca tcaggccgat cggcggcatg accacattgt cgaccaggct
     2641 cttgacgatg tcgttgaagg ccgcgccgac gatgacgccg accgccaggt caatgacgtt
     2701 gccgcgggcg atgaactcgc ggaactcgcc aaagatgccg agcctgattc tgggcgcact
     2761 catgacagac ctactcgtca gtgaggttga ggcgctcgcg cagctccttg ccgctcttga
     2821 agaagggcac gtgcttggcg cgcacgtcca ccggctcgcc ggtgcgcggg ttacgcccgg
     2881 cgcgggcctc gcgagagcgc accgaaagcg cgccgaagcc gcgcagctcc acgcggccgc
     2941 cggtttccag cgcctgaatc atccgctcca gaaccacccc cacca
//
LOCUS       DATAJL010000363         5038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93020,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000363 DATAJL010000000
VERSION     DATAJL010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5038
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93020"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2086
                     /locus_tag="VHN39_07025"
     CDS             <1..2086
                     /locus_tag="VHN39_07025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516969.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEX2816128.1"
                     /translation="AAREMRHRIADLIGGQSEGLRWLGTFHSVAAQILRRHAELVGLK
                     SNYTIIDQDDSERLLKQVLEAENVDTKRWTPKALAGIIDHWKNRGWRPDQVPAAESAH
                     FANNKGQALYRMYQERLRVLNACDFGDLLLHNLTIFTSNPGVLADFHDRFRYLLVDEY
                     QDTNVAQYLWLRLLAQKRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFPGAKVIRLE
                     RNYRSTSHILAAASGLISANKSRLGKTLWTEDKGGEKVVVRGVWDGEAESRLIADEVE
                     RARKGSTDKDARKYRDMAILVRASFQMRAFEERFVLLQIPYTVVGGPRFFERAEIRDA
                     HAYLRLIQSQDDDLAFERIVNTPKRGIGETTVAKLLQVARLGGVTAVTAARQLVLTDE
                     LAARTRTALANFLRDLDRWRAEAERTAHPRLMEAVLEESGYTDALRLDKGPTSQTRLE
                     NLKELVQSMGNFETLEAYLEHVALVMDLDRGPQADAVQIMTLHSAKGLEFPLVFLPGW
                     EEGVFPSQRSMDESGEKGLEEERRLAYVGITRAREEARVSFAANRQVYGRWTSQLPSR
                     FVDELPLDNVEASSETGYYGGGPGMQQHGSRWDETPSFGAGYSSPGWRRAQTAGYKGS
                     HPGRQQVIEGEGRLVATSAESAASDYKRGDRVFHMKFGYGAVTAVEGNKLTVAFEKAG
                     EKKVIDSFVEKG"
     gene            complement(2091..2507)
                     /locus_tag="VHN39_07030"
     CDS             complement(2091..2507)
                     /locus_tag="VHN39_07030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816129.1"
                     /translation="MSKYDPLTARLAGHAGPEWRASFAEIEEVLGFSLPKGARTGKIW
                     WRNTGAQPHQRAWTGAGWEAADVDHTGGAVVFRRKAATPSESRSPQPPPIAADEPAIL
                     SRLEATPKWTFALVATGLTIAAGLSVFAIRGWMRRR"
     gene            2658..3092
                     /locus_tag="VHN39_07035"
     CDS             2658..3092
                     /locus_tag="VHN39_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816130.1"
                     /translation="MSGAACALMAGMLMGSAMQPHLYDGDRPSGPQMFAEVAGARSTG
                     PFDPGTSVVSYQGRMPDYVMGADWKKRMAWPDERAAVSAPREVVRDDDPPPPERAVVS
                     RAAYDEPPPLPHDYPSLVGGARSASDLAVDDDSADADPAVSG"
     gene            3134..4000
                     /locus_tag="VHN39_07040"
     CDS             3134..4000
                     /locus_tag="VHN39_07040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEX2816131.1"
                     /translation="MTADAVQTIARGPRAEAEAAALAIDAEPATEALTYSILEEDEDR
                     DVWRIDAFPTTEEEQAALIATLAAFPALRVVTEKLADADWLAMALSGLPPVHAGRFFV
                     YGAHDKGRAPPSAVNLRIEAGAAFGTGHHGTTVGCLLAFDQLLKRQRFRRVLDVGCGT
                     GVLAIAAARMGSRVALGTDIDAPSVRIANENAALNRAPARFVHASGLNDARIRRPAPY
                     DLVFANILAPPLVALSQDIKLALRPGGIAILSGLLRTQERRVFAAYASKGFRLERRIH
                     RDAWATLFLRRA"
     gene            complement(3997..4341)
                     /locus_tag="VHN39_07045"
     CDS             complement(3997..4341)
                     /locus_tag="VHN39_07045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEX2816132.1"
                     /translation="MDKQSRRQAVADYKERKVSQGIFAVRCTPTGEAWVGQSQNLGQQ
                     QNRIWFGLRQGGYPNPALKAAWAARGEAAFVFQVLETIEDADLSAYARDSILKDRGAH
                     WREQLGAKKIVG"
     gene            complement(4379..4945)
                     /locus_tag="VHN39_07050"
     CDS             complement(4379..4945)
                     /locus_tag="VHN39_07050"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX2816133.1"
                     /translation="MPEDLKPWFPLRTERLLLREIREGDFDDVHAYAVDPLVARFMDW
                     GPNTHDETVTHMALKLDEQTRWPRDEVTLAIEHLADGLVIGTIRLAVSDRANLTGDFG
                     YSLHSAYWRQGFATEAARAVIGAGFRALGLHRIWAECDVDNVGSWSVMKKLGMRREAH
                     FRDGKQVKGLWRDRYLYAVLADEWISPG"
BASE COUNT          775 a         1807 c         1685 g          771 t
ORIGIN      
        1 ggccgcgcgc gaaatgcggc acaggatcgc cgacctgatc ggcggccagt cggagggcct
       61 gcgctggctg ggcaccttcc actcggtggc cgcccagatc cttcgccgcc acgccgagct
      121 ggtcggattg aaatccaact acacgatcat cgaccaggat gactccgagc ggctgctgaa
      181 gcaggtgctg gaggcggaga acgtcgacac caagcgctgg acgcccaagg cgctggccgg
      241 gataatcgac cactggaaga accgcggctg gcgcccggac caggtcccgg ccgctgagag
      301 cgcccacttc gccaacaaca agggccaggc gctctaccgt atgtaccagg agcggctgcg
      361 ggtgctgaac gcctgcgatt ttggtgattt gctgctgcac aacctgacga tctttacctc
      421 caaccccggc gtgctggccg acttccacga ccggttccgc tatctgctgg ttgacgagta
      481 ccaggacacc aatgtcgccc agtacctgtg gctgcggctg ctggcccaga agcggcagaa
      541 cgtctgctgc gtgggcgacg acgaccagtc gatctacggc tggcgcggcg ccgaggtgga
      601 caacatcctc aggttcgagc gcgacttccc gggcgccaag gtgatccggc tggagcgcaa
      661 ctaccgctcg acgagccata tcctggcggc cgcctcgggc ctgatctccg ccaacaagag
      721 ccggctcggc aagacgctgt ggaccgagga caagggcggc gaaaaggtcg tggtgcgcgg
      781 cgtctgggac ggcgaggccg agagccggct gatcgccgac gaggtcgagc gcgccaggaa
      841 gggctccact gacaaggacg cgcgcaaata ccgcgacatg gcgatcctgg tccgcgcctc
      901 cttccagatg cgggccttcg aagagcggtt cgtgctcctg cagattccct acacggtggt
      961 cggcggcccg cggttcttcg agcgcgccga gatccgcgac gcccacgcct atctgcggct
     1021 gatccagtct caggatgacg acctggcctt cgagcggatc gtcaatacgc ccaagcgcgg
     1081 gatcggcgag accacggtgg cgaagctgtt gcaggtggcc aggctgggcg gggtgaccgc
     1141 cgtcaccgcc gcgcgccagc tggtgctgac cgatgagttg gcggcgcgca cccgcaccgc
     1201 tctggccaac ttcctgcgcg acctggaccg ctggcgcgcc gaggccgagc gcacggcgca
     1261 tccgcgcctg atggaggctg tgctggagga gagcggctac accgacgcgc tccgtctcga
     1321 caaaggccca acctcgcaaa cccggctcga gaacctcaag gagctcgtcc agtcgatggg
     1381 caatttcgag accctggagg cctatctgga gcacgtcgcc ctggtcatgg acctcgaccg
     1441 cggcccgcag gccgacgcgg tgcagatcat gacgctccat tcggccaagg gcctggagtt
     1501 ccccctggtc ttcctgcccg gctgggagga aggcgtcttc ccctcccagc gcagcatgga
     1561 cgagagcggc gagaaagggc tggaggagga acgccgcctc gcctacgtcg gcatcacccg
     1621 ggcccgcgag gaagcccgcg tctccttcgc cgccaaccgc caggtctatg gccgctggac
     1681 cagccagctc cccagccgct tcgtcgatga gctgcctctg gacaacgtcg aggcctcctc
     1741 ggagaccggc tactacggcg gcggccccgg catgcagcag cacggcagcc gctgggacga
     1801 gaccccgagc ttcggcgccg gctattcctc ccccggctgg cggcgcgccc agaccgccgg
     1861 ctacaagggc agccaccccg gccgccagca ggtcatcgag ggcgaaggcc gcctggtcgc
     1921 gacctcggcc gagagcgccg ccagcgacta caagcgcggc gaccgggtct tccacatgaa
     1981 gttcggctac ggcgccgtga ccgccgtgga gggcaacaag ctcaccgtcg ccttcgaaaa
     2041 ggccggcgag aagaaggtga tcgacagctt cgtggagaag ggctgagcgc tcagcgccgc
     2101 cgcatccagc cgcggatggc gaagacgcta aggcccgcgg cgatggtcag gccggtggcc
     2161 accagggcga aggtccactt cggcgtggcc tccaggcggc tcaggatggc gggctcgtcg
     2221 gcggcgatgg gcggcggctg cggactcctg ctctcggacg gcgtcgccgc tttccggcgg
     2281 aaaacgaccg cgccgccggt gtgatcgaca tcggcggctt cccagccggc gccggtccag
     2341 gcccgctgat gcggctgggc cccggtgttc cgccaccaga tcttgccggt ccgggcgccc
     2401 ttgggcagcg agaagcccag cacctcctcg atctcggcga agctggcgcg ccactccggc
     2461 ccggcgtggc cggccaggcg ggcggtcaaa ggatcgtact tgctcatcga gcggcctccc
     2521 gccggccagg gactcgggcg ccgaagccca ggcctgacga tggcgccagc ttggccctga
     2581 accaataggc ttgccatgcg ctctaggggc ccggagtgct tacaatgcga ctgacgctag
     2641 ctgagttgaa gattcccttg tccggcgcgg cctgcgctct gatggccggc atgctgatgg
     2701 ggagcgccat gcagccgcac ctctacgacg gcgaccgccc ttccggcccg cagatgttcg
     2761 ccgaggtggc cggcgcccgc tccaccggcc ccttcgaccc cggcacatcc gtcgtcagct
     2821 atcaggggag gatgcccgac tatgtgatgg gcgccgactg gaagaagcgt atggcctggc
     2881 ccgacgagcg cgccgcggtc tccgcgcccc gcgaggtggt ccgcgacgac gatccaccgc
     2941 cgcctgaacg cgccgtcgta agtcgcgccg cctatgacga gcctccgccg ctcccgcacg
     3001 actatccttc actggtcggc ggcgcccggt cggcgagcga tctcgccgtg gacgacgatt
     3061 ccgccgacgc cgatcccgcc gtctccggct gaagcccctc gcctttccgc gcctcgcccg
     3121 ctagaggcgg cggatgaccg ccgacgccgt ccagaccatc gcccgagggc cgcgggccga
     3181 ggccgaagcc gccgcgctcg ccatcgacgc cgagcccgcc accgaagccc tgacctattc
     3241 cattctcgaa gaggacgagg accgcgacgt ctggcggatc gacgcctttc caacgacgga
     3301 ggaagaacag gccgcgctca tcgccaccct ggccgccttc ccggccctgc gtgtggtcac
     3361 tgagaagctc gccgacgccg actggctggc catggcgctg tcgggcctgc cgccggtcca
     3421 tgcgggccgg ttcttcgtct acggggccca cgacaagggc cgggctccgc cgagcgcggt
     3481 gaacctgcgc atcgaggccg gtgcggcgtt cggcaccggg caccatggga cgaccgtggg
     3541 ctgcctgctg gccttcgacc agctcctgaa gcgccagcgg tttcgtcgcg tgctggacgt
     3601 tggttgcggc accggcgtgc tggccatcgc cgcagcgcgc atggggtcgc gcgtggccct
     3661 gggcaccgac attgacgcgc cttccgtccg aatcgccaac gagaacgccg cgctcaatcg
     3721 cgccccggcc cgcttcgtcc acgccagcgg gctaaacgac gcccgcatcc gccggcccgc
     3781 gccctacgac ctggtcttcg ccaacatcct ggccccgcct ctggtggcgc tctcccagga
     3841 catcaagctg gcgctccggc ccggcggaat cgccatcctt tccggcctgt tgcgcaccca
     3901 ggaacgccgc gtgttcgccg cctatgcctc caagggcttc cggctggaac ggcgcatcca
     3961 ccgcgacgcc tgggcgacgc tgttcctgcg ccgcgcctag ccgacaattt tcttggcgcc
     4021 aagttgctcg cgccaatggg cgccgcggtc cttcaggatg ctgtcgcggg cgtaggcgct
     4081 gaggtcggca tcctcgatcg tctccagcac ctgaaagacg aacgccgcct cgccgcgcgc
     4141 cgcccaggcg gccttgagcg cgggattggg atagccgccc tggcgcaggc cgaaccagat
     4201 gcggttctgt tgctgcccca ggttctggct ctggccgacc cacgcctcgc cggtcggcgt
     4261 gcagcgcacc gcgaagatcc cttgcgagac cttgcgttcc ttgtagtcgg cgacggcctg
     4321 gcggcggctc tgcttatcca tcgtcgccgt ctacgccagc ggccttcttc tgtcaatttc
     4381 acccgggtga aatccactcg tccgccagga ccgcgtagag gtagcggtcg cgccacaagc
     4441 ccttgacctg tttgccgtcg cgaaagtgcg cctcgcggcg catgccgagc ttcttcatca
     4501 cgctccagga gccgacgttg tccacatcgc actcggccca gatgcggtgc aggccgagcg
     4561 cgcgaaaacc cgccccgatc accgcgcgcg ccgcctcggt ggcgaagccc tgacgccaat
     4621 acgcgctatg caggctgtaa ccgaagtcgc ctgtcaggtt cgcgcggtcg ctgaccgcca
     4681 agcggatcgt gccgatgacc aggccgtcgg ccaggtgctc gatagccagg gtcacctcgt
     4741 cgcgcggcca gcgggtctgc tcgtccagct tcagggccat gtgggtgacc gtctcgtcgt
     4801 gggtgttcgg tccccagtcc atgaaccgcg ccaccagcgg gtcgacggca taggcgtgga
     4861 cgtcgtcgaa atcgccctcg cggatctcgc gcagcaagag gcgctccgtc cgcaggggga
     4921 accagggttt caggtcttcg ggcatcgtcg tctcctcttc gggctttgaa aggccggcgg
     4981 cgggagatgg cgtccttcaa gcgacccctg ccggttcggc ggggtcgcgg tcttcgtc
//
LOCUS       DATAJL010000364         4659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105949,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000364 DATAJL010000000
VERSION     DATAJL010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4659
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105949"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1108
                     /locus_tag="VHN39_07055"
     CDS             <1..1108
                     /locus_tag="VHN39_07055"
                     /inference="COORDINATES: protein motif:HMM:NF038032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CehA/McbA family metallohydrolase"
                     /protein_id="HEX2816134.1"
                     /translation="QDPDPKIPPVASLTDGVWMKGDLHIHSRHSKDSSNNPVKKIIAL
                     AETVGMDYLLISDHDNHVNGDVAHHTWADPEYTSKSMVLLYGAEWTTHRGHGTALAAK
                     PYDHQRLYDVADERDVEIARVKTSLGIHLSANHPGTRDAFAFSYDFVDSVEVWQSAVW
                     ANNAINMHIWDDMLKSGRHMTGRGGSDSHHGYPDTPEQKTSLSYQAAENNVGTPTTWV
                     FAKARTGQAVVNALTNGRVAVSANPYSPRVEFTADLDGDGRADMMQGDNARPTGKPVT
                     FRVQLAGKAVVPAATYTVRVVKDGQPFAKLQVSGAKPSVDFTDTPAPRVRTYYRVEVE
                     GPPTPYPEVPGSMALSGNMLGLSNPIYFNFDPKF"
     gene            complement(1119..1607)
                     /locus_tag="VHN39_07060"
     CDS             complement(1119..1607)
                     /locus_tag="VHN39_07060"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816135.1"
                     /translation="MIKGLHHSAYRCRDSEATRAFYEDFLGLPLSGSLVISETKSGRP
                     TQVLHTFYRMDDGAFLAFFEAPDMDFEFKPQHDFDLHIALEVSPETLSAMFARGKAEG
                     RETRGVSDHGFIDSIYFRDPNGYVVELTAKRPEHDEMMDPSLNQARDILERWTAATSA
                     DG"
     gene            complement(1759..2580)
                     /locus_tag="VHN39_07065"
     CDS             complement(1759..2580)
                     /locus_tag="VHN39_07065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NmrA family NAD(P)-binding protein"
                     /protein_id="HEX2816136.1"
                     /translation="MSGLVLVTGATGKTGRSLVAQLKEKGVAHRAASRSGEPPFDWTR
                     PETWDAALEGVASVYLVAPPTVDDPYSRIVAFLESAIRTGPRRLVFLGMASLPAGGFA
                     HGQVHQWLKDNSGDWAVLSPSAFMQNFSEGPHLATIRQEATFYSNTGTGRVPFISAED
                     IASAALAALIAPTTLNSDFTLTGGESISYDQVAELISQACGRPISHTHISTEALTERF
                     LARGLPELTARFLAAGYETIASGYQDRTTEDFTSLTGKRPTTFQAFAKANAEVWR"
     gene            complement(2577..3026)
                     /locus_tag="VHN39_07070"
     CDS             complement(2577..3026)
                     /locus_tag="VHN39_07070"
                     /inference="COORDINATES: protein motif:HMM:NF024092.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2816137.1"
                     /translation="MIETKPNIASVMRDALGDRVDPAAESFVEMMAEDFVMEFPFARP
                     GMQTRIEGRTAVLTYLMTVGQGISIDSVSNVVVHDTTDPDVVIVEFDGHGRSLKTDEP
                     YEQRYISVIRTRDGRIVHYKDYWNPIQGLKAQIGSAAVDAFILDGAA"
     gene            3104..3727
                     /locus_tag="VHN39_07075"
     CDS             3104..3727
                     /locus_tag="VHN39_07075"
                     /inference="COORDINATES: protein motif:HMM:NF028169.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2816138.1"
                     /translation="MTNLPASHTGRLSGAAVKRPQITDALARTFFEEWARVGYSALSL
                     DAVARKAGVGKAALYRRWRSKADMAADLVRQLSATAIVVSDPGDQGSLEADLFAALLA
                     VRRILRHPLVRRILPDLYTAIPREPALAAAMRPGEMAREKKVEALVDRAIARGELPAD
                     VDRRTATDILIGPLYWRVVVLGERCDRRRLKALASMTAAAITARQPT"
     gene            3881..>4659
                     /locus_tag="VHN39_07080"
     CDS             3881..>4659
                     /locus_tag="VHN39_07080"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2816139.1"
                     /translation="MSVLHLLGTAGDGGAETYFVDLVTALRRAGVTEAAAIRRHAGRE
                     AALKAAGVPVKTLSFGGPIDILTRTAAAGYGRLQGAKLMLAWMNRAARHTPKGPWARI
                     GRLGGYYNLKYYAGFEELVANTEDIAEWIVSQGWPAGRVRCIPNFAAAPPQGGALDRA
                     SLDTPADAPLLLAMGRLHESKAHDVSLQALAELPDAYLWIAGVGPLEAKLKAMAQALG
                     VQDRVRFLGWRTDASALYRAADVCVFPSRYEPLGNVVIQAWA"
BASE COUNT          780 a         1619 c         1505 g          755 t
ORIGIN      
        1 ccaggacccc gacccgaaga tcccccccgt cgccagcctg accgacggcg tctggatgaa
       61 gggcgacctg cacatccact cgcggcactc aaaggactcc agcaacaacc cggtcaagaa
      121 gatcatcgcc ttggccgaga cggtcggcat ggactacctg ctgatctccg accacgacaa
      181 ccacgtgaac ggcgacgtcg cccaccacac ctgggccgat cccgaataca cgtcgaagtc
      241 catggtcctg ctctatggcg ccgaatggac cacgcatcgc ggccacggta cggcgctcgc
      301 ggccaaaccc tacgaccacc agcgcctcta tgacgtggcc gacgaacgcg acgtcgagat
      361 cgccagggtg aagacgtccc tcggtatcca cctgtcggcc aaccatccgg gcacccgcga
      421 cgccttcgcc ttctcctatg acttcgtgga ttccgtcgag gtgtggcagt cggcggtctg
      481 ggccaacaac gccatcaaca tgcatatctg ggacgacatg ctgaagtcgg gccgccacat
      541 gaccggccgg ggcggcagcg acagccacca cggctatccc gacacgcccg agcagaagac
      601 cagcctcagc tatcaggcgg ctgagaacaa cgtcggcacc ccgaccacct gggtcttcgc
      661 caaagcccgc accggccagg ccgtcgtcaa cgcgctcacc aacggccgcg tcgccgtcag
      721 cgccaaccct tacagccccc gcgtcgagtt caccgccgac ctcgacggcg acggccgcgc
      781 cgacatgatg cagggcgaca acgccaggcc caccggcaag cccgtgacct tccgcgtcca
      841 gctcgccggc aaggccgtgg tccccgccgc cacctacacg gtccgcgtcg tcaaggacgg
      901 ccagcccttc gccaagctgc aggttagcgg cgccaaaccc tcggtcgact tcaccgacac
      961 gcccgcgccc cgcgtgcgca cctactaccg cgtcgaggtc gagggcccgc cgacccccta
     1021 tccggaggtc ccgggctcca tggcgctcag cggaaacatg ctcggcctgt cgaaccccat
     1081 ctacttcaac ttcgatccga aattctgagc gcgccgcgct agccgtccgc cgacgttgcc
     1141 gcggtccagc gctccaggat atcccgcgcc tggttcagcg acggatccat catctcgtcg
     1201 tgctccggcc gcttggcggt caactccacc acatagccgt tggggtcgcg gaaatagatc
     1261 gagtcgatga agccgtggtc ggagaccccg cgggtctcgc gcccttcggc cttgccccgg
     1321 gcgaacatgg cgctgagcgt ctccggcgac acctccagcg cgatatgcag gtcgaagtcg
     1381 tgctgcggct tgaactcgaa atccatgtcc ggcgcctcga agaaggccag gaaggcgccg
     1441 tcgtccatcc ggtagaaggt gtgcagcacc tgggtagggc gcccactctt ggtctccgag
     1501 atcaccagcg atccgctcag cggcagcccc aggaagtcct catagaacgc ccgcgtcgcc
     1561 tcggagtccc ggcagcggta ggcgctgtga tgcaggccct tgatcatggg cctgatgctg
     1621 tcacgcgggg cggcgggcgg caaccgggtg ggcggcggcg gacggccgct tctgactcat
     1681 ctccaaggtt gcgaaggtct gctttcgggc acgtggttag tcgatcagct ccgcgctcga
     1741 tgcccgctgg ttcggcgctt atctccacac ttcagcattg gccttggcaa acgcctgaaa
     1801 ggtcgtaggg cgcttgccgg tcaatgacgt gaagtcctct gtcgttcgat cttggtagcc
     1861 cgaagcgatg gtttcatacc cggcggccag gaaccttgcg gtgagttcag gaagaccgcg
     1921 agcgaggaac cgttccgtca acgcctcggt cgaaatgtgt gtgtgtgaga tcggacggcc
     1981 acaagcctgg ctgatcaatt cggcgacctg gtcataggag atcgactctc cgccggtgag
     2041 cgtgaagtca ctgttcaggg tagtgggggc tatcagcgcg gcgagcgccg cgctggcgat
     2101 atcctctgcg ctgatgaacg ggacgcggcc ggtccccgtg ttggagtaga aggtagcctc
     2161 ctgccggatc gtcgccaggt gcgggccttc gctgaagttc tgcatgaagg ccgaagggct
     2221 caggacagcc caatccccgc tattgtcctt cagccattga tgcacctgtc catgggcgaa
     2281 cccgccggcg ggaagggacg ccatgcccag aaacacaagg cggcgagggc ccgtacgtat
     2341 tgcggactct agaaacgcca cgatccgtga atagggatcg tccacggtgg gcggcgccac
     2401 gaggtagacc gaagcgaccc cctccagcgc cgcgtcccag gtctcgggcc gggtccagtc
     2461 gaatgggggc tcgccgcttc tggacgcggc gcgatgggcg acgcccttct ccttgagctg
     2521 cgcgaccagg ctcctgcccg tcttgcccgt agcgccggta acgaggacca ggccgctcat
     2581 gcggcgccat cgagaatgaa cgcgtcgacc gcggccgagc cgatctgcgc cttcaggccc
     2641 tggatcgggt tccagtagtc cttgtagtgc acaatgcggc catcgcgcgt gcggatgacg
     2701 gagatgtagc gctgctcgta gggctcgtcc gtcttgagcg agcggccatg gccgtcgaac
     2761 tccacgatga cgacatccgg gtcggtggtg tcgtgcacca caacattgct cacgctatcg
     2821 atgctgatcc cctggccgac ggtcatgaga taggtgagca cggccgtgcg gccctcgatc
     2881 ctggtctgca tcccgggccg ggcgaagggg aactccatca cgaagtcctc cgccatcatc
     2941 tctacgaaac tctccgccgc cgggtcgacg cggtcgccca gcgcgtccct catcacggac
     3001 gcgatgtttg gcttggtctc gatcatgggc taagtctccg gcgatggaac aggacagtat
     3061 cgacgggata gacgagggtc caatggaacg caacagttcc gtcgtgacga atcttccggc
     3121 gtcccacacc ggccgcctga gcggcgcggc cgtgaagcga ccgcagatca ccgacgccct
     3181 ggcgcggacc ttcttcgagg aatgggcgcg ggtcggctac tcggcgctca gcctcgacgc
     3241 cgtggcccgg aaagccggtg tgggcaaggc cgccctctat cgccgctggc gttccaaggc
     3301 cgatatggcc gctgacctgg tccgacagct ttctgcgaca gccatcgtgg tgagcgatcc
     3361 cggcgatcag ggctcgctgg aggccgacct cttcgcggcg cttctggccg tccgccgcat
     3421 cctgcgccac cccctggtgc gccggattct gcccgacctc tacacggcga tcccgcgcga
     3481 gccggctctg gccgcggcga tgcggccagg ggagatggcg cgagagaaga aggtcgaggc
     3541 gttggtcgac cgggccatcg cccgaggcga gctgcccgcc gacgtcgacc ggcgcacggc
     3601 gacggatatc ctgattggcc ctctgtactg gcgcgtcgtc gtgctgggcg aacgctgtga
     3661 ccggcggcgg ttgaaagcgc tcgcaagtat gacggcggct gcgatcaccg cccgccaacc
     3721 aacgtgacgc ccgtagaaag tgaggcgttg ggttcgcctg gagtctgggg cggtcactag
     3781 ccagttgggt tgaatgtccc ctttgcggag acggcgacaa atagcccgcc actgtctcct
     3841 cttgggccgc gccctctgac ccgctaggtt cgccgcacac atgagcgtgc tgcaccttct
     3901 gggaacggcc ggcgacggcg gagcggagac ctacttcgtt gacctcgtta cggccctgcg
     3961 gcgggccggc gtcaccgagg ccgcggccat ccgccggcac gctgggcgcg aggcggcgct
     4021 gaaggccgcc ggggttcctg tgaagacctt gagcttcggc ggacccatcg acatcctcac
     4081 caggaccgcg gcggcgggtt acggccggct gcagggcgcc aagctcatgc tggcctggat
     4141 gaaccgcgcc gcgcgccaca cgcccaaggg cccctgggcg cggatcggcc ggctgggcgg
     4201 ctactacaac ctcaaatact acgccggctt cgaggagctg gtcgccaaca ccgaggacat
     4261 cgccgagtgg atcgtcagcc agggctggcc ggccggccgg gtgcgctgca tccccaactt
     4321 cgccgccgcc ccgccccagg gtggagccct cgaccgtgcg agcctcgaca cgccggccga
     4381 cgcccccctg ctcttggcca tgggccggct gcacgagtcc aaggcccatg acgtcagcct
     4441 gcaggcgctg gccgaactgc cggacgctta cctctggatc gccggtgtcg gcccgctgga
     4501 ggccaagctg aaggccatgg cccaggcgct gggcgtccag gaccgcgtgc ggttcctggg
     4561 ctggcgcacc gacgcttccg cgctctatcg ggcggccgac gtctgcgtct tcccttcgcg
     4621 ctacgagccc ttgggcaatg tggtgatcca ggcctgggc
//
LOCUS       DATAJL010000365         2693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45127,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000365 DATAJL010000000
VERSION     DATAJL010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2693
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45127"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..655
                     /locus_tag="VHN39_07085"
     CDS             <1..655
                     /locus_tag="VHN39_07085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ScpA family protein"
                     /protein_id="HEX2816140.1"
                     /translation="LKLAEQYLAFVQQARRAQFSLAADYLVMASWLAYLKSRLLLPKP
                     EQPQADEAPAEEIAARLAFRLAKLDAMRNAAEGLRTRPQLGREVFGRGDPEAIKVIPS
                     GRIEGDLYSLMSAYIAQRTKEASRTYTPTPPKAYPLEEARERLRRLLPELARWTPLAG
                     VAPIGGAGQGPSRASYVASTLSAGLELVKEGALEARQLEAFADIYLRTKKGALEGRT"
     gene            655..1299
                     /gene="scpB"
                     /locus_tag="VHN39_07090"
     CDS             655..1299
                     /gene="scpB"
                     /locus_tag="VHN39_07090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEX2816141.1"
                     /translation="MTDAIYTEREIEALLFAAAGPLSGADLAKRLPEGADVAGAIAAL
                     QARYAGRGVELVCVAGRWRFQTAADLAWLMTDEREEPRRLSRAAQETLAIIAYHQPVT
                     RAEIESVRGVQASKGTLDVLLELGLVRMRGRRRTPGRPITYGTTDAFLEHYGLASVGD
                     LPGAGEMRAAGLLSLDLPADFTVPDPNALAADEDPLNEGDAPEFHTDFLGEETA"
     gene            complement(1296..1916)
                     /locus_tag="VHN39_07095"
     CDS             complement(1296..1916)
                     /locus_tag="VHN39_07095"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816142.1"
                     /translation="MILVGHSWGSLVGVYALKRAPDRFSSYVGTGQVVTWRQTVAGEY
                     AYVLDRVTTEGDAKAVAELHALGDPSTFDFGKMNAVRQRLNRYLPASDTAYLELQRRR
                     AREAPNPAETKAVNDGVFFSVPRLLPALMAADVPALGYDMPRPFFVFQGREDHITPTD
                     VAFDYVRRLKAPRTGAETLDGGHFAVFSNPGAFVDLMDRKARPLAL"
     gene            1937..2134
                     /locus_tag="VHN39_07100"
     CDS             1937..2134
                     /locus_tag="VHN39_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816143.1"
                     /translation="MVEQVMSRWRPFFDDGDLGMAFRDFVILIDAIIDGLLIQRALTP
                     RLVSDQLIALAFANFAGGART"
     gene            2246..2494
                     /gene="tatA"
                     /locus_tag="VHN39_07105"
     CDS             2246..2494
                     /gene="tatA"
                     /locus_tag="VHN39_07105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEX2816144.1"
                     /translation="MGTFTIWHWLVVLIIVALVFGGRGKLSGIMGDAAKGVRAFREGL
                     KGEEEAHEEAPPPATPIAKTATKAAPKTAAKTSAKTKA"
     gene            2561..>2693
                     /locus_tag="VHN39_07110"
     CDS             2561..>2693
                     /locus_tag="VHN39_07110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatB"
                     /protein_id="HEX2816145.1"
                     /translation="MFPEGRLFEFLIAATVALIVVGPKDLPILLRKLGQFMARVRSMA
                     "
BASE COUNT          427 a          935 c          918 g          413 t
ORIGIN      
        1 cctcaagctc gccgagcagt acctggcctt cgtgcagcag gctcggcgcg cgcagttctc
       61 gctggccgcc gactatctgg tgatggcctc atggctggcc tacctgaagt cccgcctgct
      121 gctgcccaag cccgaacagc cccaggccga cgaggcgccg gccgaggaaa tcgccgcacg
      181 gctcgccttc cgcctggcca agctcgacgc catgcgcaac gccgccgaag gcctgcgcac
      241 ccgcccgcag cttggccgcg aggtcttcgg ccgcggcgac ccggaagcca tcaaggtgat
      301 cccttcaggc cgcatcgaag gcgacctcta cagcctgatg agcgcctaca tcgcccagcg
      361 gaccaaggaa gccagccgca cctacacccc gacgccgccc aaggcctatc cgctggagga
      421 agcgcgggaa cgcctgcgcc ggctgctccc ggaactggcc cgctggacgc cgctggccgg
      481 cgtcgccccc ataggtggag ccgggcaggg ccccagccgc gcctcctacg tcgcctcgac
      541 gctctccgcc gggcttgagt tggtcaagga aggcgcgctg gaggcccgcc aactggaggc
      601 cttcgccgac atctacctgc ggaccaagaa gggcgccctg gagggacgaa cctgatgacc
      661 gacgccatct acaccgagcg cgagatcgag gccctgctgt tcgccgccgc cggacccttg
      721 agcggggccg accttgccaa gcggcttccg gagggcgccg acgtggccgg ggcgatcgcc
      781 gccctccagg cgcgctacgc cggccgcggc gtggagctcg tctgcgtagc cggccgctgg
      841 cggttccaga cggcggcgga tctcgcctgg ctgatgaccg acgagcggga agagccccgg
      901 cgcctgtcgc gggcggccca ggagacgctg gccatcatcg cctaccacca gccggtgacc
      961 cgcgcggaga tcgagtcggt gcgcggcgtt caggccagca agggcacgct ggacgtgttg
     1021 ctggagctgg gcctggtgcg catgcgcggg cgaaggcgca cccctggtcg gccgatcacc
     1081 tacggcacga cggacgcctt cctggagcac tatggcctgg ccagcgtcgg cgatctgccg
     1141 ggcgcgggcg agatgcgggc cgccggcctg ctctcgctgg atctgcccgc cgacttcacg
     1201 gtccccgatc ccaatgccct ggccgccgac gaagacccgc tgaacgaggg cgacgccccg
     1261 gagttccaca ccgatttcct gggcgaggag accgcttaga gcgccagtgg ccgggccttg
     1321 cggtccatca gatccacgaa cgcgcccggg ttgctgaaga ccgcgaagtg gccgccatcg
     1381 agtgtctccg caccggtcct gggcgctttg agtcttcgga cgtagtcgaa cgccacatcg
     1441 gtgggtgtga tgtggtcttc gcggccctgg aagacgaaga acggcctggg catgtcgtag
     1501 cccagagccg gcacatcggc cgccatcagc gcaggcagca ggcgcggcac ggagaagaac
     1561 acgccatcgt tgaccgcctt ggtctccgcc ggattgggcg cctcgcgggc gcggcggcgc
     1621 tgcagctcca ggtacgcggt gtcggacgcg ggcaagtagc ggttcagccg ctggcgcaca
     1681 gcgttcatct tgccgaagtc gaacgtcgag gggtcgccga gcgcgtggag ttcggcaacg
     1741 gccttggcgt cgccctcggt cgtcacgcgg tcaagcacat aggcatattc gcccgccacg
     1801 gtctgccgcc aggtcaccac ctggccggtt ccgacatagg acgagaagcg gtcgggcgcg
     1861 cgcttcaggg cgtagacgcc gaccagtgac ccccaggaat gcccgaccag gatcacctgc
     1921 cgcctggacc gagggcatgg tggagcaggt gatgagccgc tggcggccgt tcttcgacga
     1981 cggcgacctg ggcatggcct tccgcgattt cgtgattctc atcgatgcga ttatcgacgg
     2041 gctgctcatc cagcgggcgc tgactcccag actggtgagc gaccaattga ttgctttggc
     2101 cttcgcgaac ttcgctggcg gcgcgaggac ttagggctgg atttgtcgcg tggcgcggct
     2161 tgtcgagacc gactatatag ccgtctgaag atgttgcggg gcgcagccgc tctggcctgc
     2221 gaaccgacct gaggagttac cccgtatggg cactttcact atttggcact ggcttgtggt
     2281 gctgatcatc gtggccctcg tgttcggcgg ccgcggcaag ctttccggaa tcatgggcga
     2341 cgccgcaaag ggcgtccgcg ccttccgcga aggcctgaag ggcgaggaag aagcccacga
     2401 ggaagcgccg ccgccggcca cgccgatcgc caagacggcg accaaggccg cgccgaagac
     2461 cgccgccaag accagcgcca agaccaaggc ctgagctgat ccgtcggccc gctcgtgtct
     2521 cccgtttcca ccgcgcctga aaccgcgcta aggcacggcc atgtttcctg aagggcgcct
     2581 cttcgaattc ctgatcgccg ccaccgtggc gttgatcgtg gtgggtccga aggacctgcc
     2641 gatcctcttg cgcaagctcg gccagttcat ggccagggtg cgctcgatgg cgg
//
LOCUS       DATAJL010000366         1751 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45204,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000366 DATAJL010000000
VERSION     DATAJL010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45204"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VHN39_07115"
     CDS             <1..901
                     /locus_tag="VHN39_07115"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816146.1"
                     /translation="VQHRTDAQGIQAVGWFLVIMTPITIALVTLRTPEPLHRLPPARV
                     KLSDYASLLARPNVIRVLAADFFVILGPGWMSALYLFYFTDSRGFSTSGANLLLVIYI
                     AAGLVGAPATAWLANRINKHRALIVTTTGYSLMLIVLFLLPKANFAFAAPVMFVNGGL
                     AAGTIVMIRSITADVGDEIRLENGQQQIGLLYALTSGSTKAAAAFAVFLTFWVLSLVG
                     YNPAEHAVNGPAQIRGLELAFTIGPIVFVMIGGGCFLGYKLSAERHADIRRELDERDA
                     LYDESAIVQSVSGAPGEVVALRP"
     gene            1040..>1751
                     /locus_tag="VHN39_07120"
     CDS             1040..>1751
                     /locus_tag="VHN39_07120"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816147.1"
                     /translation="MPLPRLLAFSVGSIPAYMLISMTGVYLPPFYAGKMGISLTAIGA
                     TIGLLRLTDLGLDVALGWLMDKTRTPMGRYRPWYLAGLPVLWLAVYKVFNPPADVDTA
                     YLFVWYILLYVAYSMLVLGHSAWAAAISGSYNERSRMFGWMLGVGVCGSSFLGLLPLL
                     THGQITAADAKSMPTIGWIIMAVSTVAVVVATLSVREPVSRTSPTQRSSLKDFLAVIT
                     NPSMFRLVLADLFLVLGPG"
BASE COUNT          253 a          612 c          545 g          341 t
ORIGIN      
        1 cgtccagcac aggacggacg cgcaaggaat ccaggccgtc ggctggttcc tggtgatcat
       61 gaccccgatc accatcgcgc tcgtcacgct gcgaaccccg gagccgcttc acaggcttcc
      121 gccggctcgt gtcaagctct cggactatgc gagcctgctc gctcggccga acgtcattag
      181 ggtgttggcc gccgacttct tcgtgatcct cggccccggc tggatgagcg cgctctatct
      241 gttctacttc accgacagcc gcggcttctc gacctcgggc gcgaacctgc tgctagtgat
      301 ctacatcgcc gccggtctgg tcggcgcgcc ggccacggcc tggctcgcca accgcatcaa
      361 caagcaccgg gcgttgatcg tcacgaccac cggctattcg ctgatgctga tcgtcctctt
      421 cctgttgccc aaggcgaact tcgccttcgc ggcgccggtg atgttcgtga atggtgggct
      481 ggcggccggc accattgtga tgatccgctc gatcaccgcc gacgtgggcg acgagatccg
      541 tctggagaac ggccagcagc agatcggcct gctctatgcg ctgaccagcg gctcaaccaa
      601 ggccgccgcc gccttcgcgg tcttcctgac cttctgggtg ctgagcctag tgggctacaa
      661 tcccgccgag cacgcggtga atggaccggc ccagatccgc ggcctggagc tcgccttcac
      721 catcgggccc atcgtcttcg tgatgatcgg gggcggctgc ttcctcggct acaagctttc
      781 ggcggagcgc cacgccgaca tccgccgcga actcgacgaa cgcgacgcgc tctatgacga
      841 aagcgccatc gtgcagagcg tttccggcgc gcctggcgag gtcgtcgccc tccgcccgtg
      901 accgtaggtc ccgccggaaa gcgcttgcgc cacggcgatc tgcaagctct cctgcccaga
      961 taaccacccc atcagagggt gacctattga tattgggaga cgctcagtga ccttagcctc
     1021 agggacccct gcgggtcggt tgccattgcc tcgcctgctg gccttctccg tcggcagcat
     1081 ccccgcctac atgttgatct cgatgacggg cgtgtatctg ccgccgttct acgccggcaa
     1141 gatggggatc tcgctgacgg ccatcggggc caccatcggc ctgctccgcc tgaccgacct
     1201 gggcctcgac gtggcgctgg gctggctgat ggacaagacg cgcacgccca tggggcgcta
     1261 ccggccctgg tacctcgcgg gcctgccggt gctttggctc gccgtctaca aggtgttcaa
     1321 cccgcccgcc gatgtggaca cggcctacct cttcgtctgg tacatcctgc tttacgtggc
     1381 ctattccatg ctggtgctgg gccactcggc gtgggcggcg gcgatcagcg gcagctacaa
     1441 cgagcgctcc cggatgttcg gctggatgct gggggtcggc gtgtgcggct cgtccttcct
     1501 cggcctcttg ccgctcctca ctcacggaca gatcacggcg gcggatgcca agagcatgcc
     1561 gaccatcggc tggatcatca tggccgtatc cacggtcgcg gtggtggtcg ccacgctttc
     1621 ggtgcgcgag ccggtcagcc ggacgtcccc aacccagcgg agcagcctca aggacttcct
     1681 ggcggtgatc accaacccgt cgatgttccg gctggtcctg gccgacctgt tcctggtgct
     1741 gggtcccggc g
//
LOCUS       DATAJL010000367         1674 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105975,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000367 DATAJL010000000
VERSION     DATAJL010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105975"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..400)
                     /locus_tag="VHN39_07125"
     CDS             complement(<1..400)
                     /locus_tag="VHN39_07125"
                     /inference="COORDINATES: protein motif:HMM:NF013702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX2816148.1"
                     /translation="MRWFRRAVIVLIARPIARMFTGADIVGREKLPLTGPAILVANHA
                     SHVDTVLLLTIYPSRALDRVRPAAAADYFLKGGLMSWFSRNILAIVPVARDRAGAGED
                     VLAPARAALAAGDIVLIFPEGTRGDGEELTR"
     gene            complement(400..1389)
                     /locus_tag="VHN39_07130"
     CDS             complement(400..1389)
                     /locus_tag="VHN39_07130"
                     /inference="COORDINATES: protein motif:HMM:NF013327.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEX2816149.1"
                     /translation="MLMADGGTMDVITGFFAAQPRALLWGLGGVLGVLTLAVAVTAAL
                     PLLKPGGDFTNLRQRINSWWVMIALLAAALLLGWIAVLILFVVISFIGLREFLSLAHI
                     RPEDRLIVLLAYLCIPVSYAFIAIDRYGMYLVFIPVYVFMFLPFAMTWIGQTRAFLAT
                     AATFHWGLVTCVYNLGFAAFLMRAPLDDHLPAGPAGLVFFLLVATEANDVMQYVWGKL
                     LGRNKIIPKVSPNKTWEGFIGGWITTAALIWFLGPVFTPLSGLGLAITALALPVAGFA
                     GDVTMSAIKRDIGVKDSSGLIPGHGGLLDRADSLIFTAPLYFHILIFFCLRDF"
BASE COUNT          301 a          567 c          591 g          215 t
ORIGIN      
        1 gccgggtcag ctcctcgccg tcgccgcggg tgccttccgg gaagatcagc acgatgtcgc
       61 cggccgccag cgccgcgcgg gcaggcgcca gcacatcctc gccggcgccg gcccggtcgc
      121 gcgccaccgg cacgatggcc aggatgttgc gcgagaacca gctcatcagc ccgcccttca
      181 gaaagtagtc cgccgccgcc gccggccgca cgcggtccag cgccctcgac ggatagatgg
      241 tcagcagcag gacggtgtcg acatggctgg catggttggc gaccaggatc gccggccctg
      301 tcagcggcag cttctcgcgc ccgacgatat cggcgccggt gaacatccgc gcgatgggcc
      361 gggcgatcag gacgatgacc gcgcgccgaa accagcgcat cagaagtccc tcaggcagaa
      421 gaagatcagg atgtggaaat agagcggcgc ggtgaagatc aggctgtcgg cgcggtccag
      481 gaggccgccg tggccgggga tcaggccact ggaatccttc accccgatgt cgcgcttgat
      541 ggcgctcatg gtcacatcgc ccgcgaagcc cgccaccggc agggccagcg ccgtgatggc
      601 gagacccagg ccgctgagcg gtgtgaagac gggccccagg aaccagatca acgccgccgt
      661 cgtgatccag ccgccgatga agccctccca ggtcttgttg gggctgacct tggggatgat
      721 cttgttgcgg cccaagagct tgccccagac gtactgcatg acgtcgttgg cctccgtcgc
      781 caccagcagg aagaagacca ggcccgcggg tcccgccggc agatggtcgt ccagcggcgc
      841 gcgcatcagg aaggccgcga agcccaggtt gtagacgcag gtgaccaagc cccagtggaa
      901 ggtcgccgcc gtcgccagga aggcccgcgt ctggccgatc caggtcatgg cgaagggcag
      961 gaacatgaag acgtagacgg ggatgaagac cagatacatg ccgtaccggt cgatggcgat
     1021 gaaggcgtag ctgaccggga tgcagaggta ggcgaggagc acgatcagcc ggtcctccgg
     1081 ccggatatgg gccagcgaca ggaactcccg aagcccgatg aacgagatca ccacgaagag
     1141 gatcagcacc gcgatccagc ccagcagcag ggccgcggcc agcagcgcga tcatcaccca
     1201 ccacgagttg atgcgctgac gcaggttggt gaagtcgccg ccgggcttca gcagcggcag
     1261 ggcggcggtg accgcgaccg ccagggtcag cacgcccagc accccgccca ggccccagag
     1321 cagggcccgc ggctgggcgg cgaagaagcc ggtgatgacg tccatggttc ctccgtcggc
     1381 catgagcatg acgggcgcgc ctcgcgggtc aagcgagctc gcttgacggt ggaagccggc
     1441 gcggcgacgg tcgcgcggtg acacccttcc agcgcctcgc caaatcgacc gccgttcacg
     1501 tgagcttcgc gttcatcgcc atgggcggct ggacgctgtg ggccaaccag ggccacggcc
     1561 tcgccgccgc ctggccgccg gcgctggcgc agggcgtcat gtccggggtg atcaccctgg
     1621 tcctgaagcg cgcgctggaa gccatggtca cgcgcctgcc gggcgccgcg gcct
//
LOCUS       DATAJL010000368         1904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45222,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000368 DATAJL010000000
VERSION     DATAJL010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45222"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..895
                     /locus_tag="VHN39_07135"
     CDS             <1..895
                     /locus_tag="VHN39_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HEX2816150.1"
                     /translation="LDAALASEALGAAVAPVPFMGVVLGPLALMRGGSAAQQAEWLPK
                     LASGEMMAAVAISESVAGARDGAGVTFQDGKLSGKALFVPGGMVAGLLIVADTAGELY
                     LTPGDAVGPSGKTLMPGIDETRRLAELTFDKVAAEPLCGGPELLTALRDAGWVLVAAD
                     TLGAAQVMLDRAVDYAKERRQFGRVIGSFQAVKHLCAEMAAELEPCRSLVWYAAYAFD
                     AATPGVSGEASLMAAHAKALTSEVGRFVARTSTEVHGGMGITDLLGLHFWFKRIGLNR
                     QLLGGPERVREIAARLQGLAA"
     gene            complement(892..>1904)
                     /locus_tag="VHN39_07140"
     CDS             complement(892..>1904)
                     /locus_tag="VHN39_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEX2816151.1"
                     /translation="TGLTRNPWDLTRSSGGSSGGSSVAVAAGIVPVAHATDGGGSIRI
                     PASNCGLFGLKPSRGRIADFEGKAGITDIGVEHVVSRTVRDSAALFALTEDMAPRASF
                     PPVGLVAAPNKRRLRIGVLLENGPGHSPTPEVVAANDHAAKLVQSLGHHVDVTHLPYD
                     GLQFIQDFLVLWAGGAAQTADRIAHAIGRAPDERELEPFSLGLVESARKAGPQALGPV
                     IQRLSANALAYDTWFPAHQFDVVLSPVLSSGPPLLGEVGPLVPFDALVERLIEYVGYT
                     PIHNVAGAPAMSVPLYWTEAGLPIGTMFSARAGNERVLFELAYELEAANPWAQRIPPV
                     HV"
BASE COUNT          266 a          622 c          743 g          273 t
ORIGIN      
        1 gctggacgcg gcgctcgcgt cggaggcgct gggcgcggcg gtagcgcccg tcccgttcat
       61 gggcgtggtg ctggggccgc tggcgctgat gcgcgggggg tcggcggcgc agcaggcgga
      121 gtggctgcca aagctggcca gcggcgagat gatggccgcg gtcgcgatct ctgagtctgt
      181 cgccggggcg cgagacggcg cgggcgtgac gttccaggac ggcaagctca gcggcaaggc
      241 gctgttcgtg ccgggcggga tggtggcggg cctgctgatc gtcgccgaca ccgcgggcga
      301 gctttatctg acgcccggcg acgcggtggg tccatcgggg aagaccctga tgccgggcat
      361 cgacgagacg cggcggttgg cggaacttac cttcgacaag gtggcggccg aaccgttgtg
      421 cggcgggccg gagttgctca cggcactccg cgacgccggc tgggtgctgg tggccgccga
      481 caccctgggc gcggcccagg tgatgctcga cagggccgtg gattacgcca aggaacgccg
      541 ccagttcggc cgggtgatcg gctcgttcca ggccgtgaag cacctgtgcg ccgagatggc
      601 cgcggaactg gagccctgcc gctcgctggt ctggtacgcg gcctacgcct tcgatgcggc
      661 gacgccaggt gtctctggcg aggcctcgct gatggccgcc cacgccaagg ccctgacctc
      721 ggaggtcggc cgcttcgtgg cccggacctc gacggaagtg catggcggca tgggcatcac
      781 cgacctgctc ggcctgcact tctggttcaa gcgcatcggc ctcaaccgcc agctgctcgg
      841 cgggccggaa cgggtgcgcg agatcgccgc gcggctgcag gggctggcgg cctagacgtg
      901 aaccggcgga atgcgctgcg cccaggggtt ggcggcttcc agttcgtagg cgagctcgaa
      961 taggacgcgc tcattcccgg cgcgggcgga gaacatggtc ccgatcggca ggccggcctc
     1021 ggtccagtag agcggcacgc tcatggccgg ggcgccggcg acgttgtgga tcggggtgta
     1081 gcccacatat tcgattagcc gctcgaccag ggcgtcgaag ggcaccagcg gcccgacctc
     1141 gcccagcagc ggcggcccgg acgacagcac cggggacagc accacgtcga actggtgggc
     1201 cgggaaccag gtgtcgtagg cgagcgcatt ggcgctcagg cgctggatca ccggacccag
     1261 ggcctggggc ccggcttttc gggcgctctc caccaggccg aggctgaagg gttccagctc
     1321 gcgctcgtcc ggcgcgcggc cgatggcgtg ggcgatgcgg tcggcggtct gcgccgcgcc
     1381 gccggcccag agcaccagga agtcctggat aaactgcagg ccgtcgtagg gcaggtgggt
     1441 cacgtcgacg tggtgtccga gactctgcac cagcttggcc gcgtggtcgt tcgccgccac
     1501 cacctcgggc gtcgggctgt gcccgggtcc gttctccagc agcacgccga tccgcagacg
     1561 gcgcttattg ggcgcggcca ccaggccgac tggcggaaag ctggcgcgcg gggccatgtc
     1621 ttcggtcaac gcgaacaggg ccgcggagtc ccgcaccgtg cgggagacca catgctcgac
     1681 cccgatgtcg gtgatcccgg ccttgccctc gaagtcggcg atccggccgc gcgagggctt
     1741 caagccgaag agaccgcagt tggaggccgg gatgcgaatc gagccgccgc cgtcggtggc
     1801 gtgggcgacg gggacgatcc cggcggcgac ggccacggat gagccgcccg aagagccgcc
     1861 agacgatcgc gtcaggtccc agggattgcg ggtcaggccg gtgg
//
LOCUS       DATAJL010000369         2120 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_80987,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000369 DATAJL010000000
VERSION     DATAJL010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80987"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VHN39_07145"
     CDS             <1..252
                     /locus_tag="VHN39_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816152.1"
                     /translation="LQRDALPSARSLAAGKIAGGCGDLRVVDTSFEGFGEVPDPQTPA
                     DRERRTWSEHWTFAGCGQQTTVTMRFAPDRTGTSFVAGS"
     gene            complement(266..994)
                     /locus_tag="VHN39_07150"
     CDS             complement(266..994)
                     /locus_tag="VHN39_07150"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2816153.1"
                     /translation="MPPLDLRRSVGHEGTAEFENPHGKLTFGDDVPAENYRSVLDFGC
                     GCGRVARQMMLQADARPERYLGVDLYPPSIRWCARHLTRFDPRYRFARMNAFNPKFNP
                     YGRHDAPIPTREQFALVNAHSVFTHILERDVQFYFDECRRSLEPGGVLRATWFMFDKA
                     EAPMMHDYQHALYISLEDPTHAVIYDREFVRDLYKKAGLSIFKVHTPGLRGFQWVVYG
                     RLGPGEDVEFPRDDAPTGRAPPPR"
     gene            complement(1017..>2120)
                     /locus_tag="VHN39_07155"
     CDS             complement(1017..>2120)
                     /locus_tag="VHN39_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEX2816154.1"
                     /translation="DAIQAIMLPTLGEERQATYSPFLPISPKSGRVLQAPTLSRDVEK
                     GTITFADEDGTITETSVTGGRVKLQWRPDWAARWTALNVDFEASGKDLIDSVRVSNKI
                     VRALGGEPPEAFHFELFMDENNQKISKSKGNGLTMEEWLRYGTPESLAYYMFQSPKSA
                     KRLYFDVIPKATDEYLSHLDAFNRARAENANAPALDNPAWHVHRGAPPERGSPVSFSL
                     LLNLVSAADASTKDILWGFLERYIPGATPASEPVLDQLAGYAINYYEDFVKPAKTFRA
                     PDERERAAMQALTARLKALPAGADAEAIQNEVFEVGKDAGFEPLRGWFSALYEVLLGQ
                     SQGPRFGSFTAIFGVERTVALIERALAGDLVAA"
BASE COUNT          326 a          715 c          737 g          342 t
ORIGIN      
        1 ctgcaacgcg atgcgctgcc cagcgcgaga agcctggccg ccggaaaaat cgctggcggc
       61 tgtggcgacc tgagggtcgt ggacacaagc ttcgagggct tcggcgaggt ccccgacccc
      121 caaacccccg cggaccgcga acgccgcacc tggagcgagc actggacctt cgccggttgc
      181 ggtcagcaga ccacggtcac catgcgcttc gcccccgacc gcaccggcac gtcgtttgta
      241 gcgggctctt aggtcgcccg ggcgcctagc gcggtggcgg ggcgcggccc gtgggcgcgt
      301 cgtcgcgggg gaactccacg tcctcgccgg ggcccaggcg gccatagacc acccactgga
      361 acccgcgcag gccgggcgtg tggaccttga agatggagag cccggccttc ttgtagaggt
      421 cgcgcacgaa ttcgcggtcg tagatcaccg cgtgggtcgg gtcctcgagg ctgatgtaga
      481 gcgcatgctg gtagtcatgc atcatcggcg cctcggcctt gtcgaacatg aaccaggtgg
      541 cgcgcagcac cccgcccggc tccagcgacc ggcggcactc gtcgaaatag aactgcacgt
      601 cgcgctcgag gatgtgggtg aacaccgagt gggcgttgac cagcgcgaac tgctcgcgcg
      661 tggggatcgg cgcgtcgtgc cgtccatagg gattgaactt cggattgaag gcgttcatcc
      721 gcgcgaaccg gtagcgcggg tcgaagcggg tcaggtgcct ggcgcaccag cggattgacg
      781 gcggatagag atcgacgccc aggtagcgtt cgggccgggc gtcggcctgc agcatcatct
      841 gccgcgccac ccggccgcag ccgcagccga aatccagcac gctccggtag ttctccgccg
      901 gcacgtcgtc gccgaaggtg agcttgccgt gcgggttctc gaactctgcc gtgccctcat
      961 gccctaccga ccggcgcagg tcgagcggcg gcatcggggg ctcagccgct gtcatgtcac
     1021 gcggcgacca ggtcgccggc cagggcgcgt tcgatcaggg ccacggtgcg ctccaccccg
     1081 aagatcgccg tgaaggagcc gaaacgcggc ccctggctct ggcccagcag gacctcgtag
     1141 agcgccgaga accagccgcg caggggttcg aagccggcgt ccttgccgac ctcgaagacc
     1201 tcgttctgga tcgcctcggc atccgcgccg gccggcaacg ccttcagcct ggcggtcagg
     1261 gcctgcatgg ccgcgcgctc gcgctcgtcg ggcgcgcgga aggtcttcgc gggcttcacg
     1321 aagtcctcgt agtagttgat cgcataaccg gcgagctgat ccagcaccgg ctcgctggcc
     1381 ggcgtcgcgc cggggatata gcgctccagg aacccccaca ggatgtcctt ggtcgaggcg
     1441 tcggccgccg agaccaggtt cagcagcagc gagaagctga ccggcgaccc gcgctccggc
     1501 ggcgcgcccc gatggacgtg ccaggcgggg ttgtcgaggg ccggggcatt ggcgttctcg
     1561 gcccgcgcgc ggttgaaggc gtcgaggtgg ctcagatatt cgtccgtggc cttggggatc
     1621 acgtcgaaat agagccgctt ggccgacttc ggcgactgga acatgtagta ggccaggctc
     1681 tccggcgtgc cgtagcgcag ccactcctcc atggtcaggc cattgccctt ggacttggaa
     1741 atcttctggt tgttctcgtc catgaacagt tcgaagtgga aggcctccgg cggctcgccg
     1801 cccagcgccc ggacgatctt gttggagacc ctgaccgagt cgatcaggtc cttgcccgag
     1861 gcctcgaaat cgacgttgag cgccgtccag cgggccgccc agtcgggccg ccactgcagc
     1921 ttcacccggc cgcctgtgac cgacgtctcg gtgatcgtcc cgtcctcgtc agcgaaggtg
     1981 atagtgccct tctcgacgtc gcgcgacagg gtcggcgcct gcagcacgcg gcccgacttg
     2041 gggctgatcg gcaggaacgg cgaataggtc gcctgccgct cttcgcccag tgtcggcagc
     2101 atgatcgcct ggatggcgtc
//
LOCUS       DATAJL010000370         3640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_105997,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000370 DATAJL010000000
VERSION     DATAJL010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3640
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105997"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            182..991
                     /locus_tag="VHN39_07160"
     CDS             182..991
                     /locus_tag="VHN39_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816155.1"
                     /translation="MPPAPAAARQDLRFPWEPESVNRANLATAALRQLMLQRVPTRGP
                     QTLLIAAGSLVGFAAQNSALEQGELLTARRDLVAPESLMLRQNEHRQRFLMGRWINAP
                     LLLGYGHGFPLQRFVIQAAAAAGVGRNQFPDYWEMERRVAKDALDGVFGTLEPGEGRE
                     RMARPQDTLKALWAPARRILTAPMPLEMMDEPMLSVAHWPTAMSVVAARLIAMTADAV
                     PPLVAADLVMEAAFIASKLDPDLVDQGRWTLAPSPRGLQIARDDRRRRAIA"
     gene            complement(988..1470)
                     /gene="folK"
                     /locus_tag="VHN39_07165"
     CDS             complement(988..1470)
                     /gene="folK"
                     /locus_tag="VHN39_07165"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEX2816156.1"
                     /translation="MVVALGGNLAGDFKSSEALLEAALAQFPRAGLPVLARSRWWSSA
                     AWPDPEGNEYRNGVAIVEANGPPDAVLEALFAIERSFGRTRGVPNAPRTLDLDLIAHG
                     RAVLTGPGLILPHPRAHDRLFVMGPLAEIAPDWRHPVSGLTAAELAASAKVGRDARPL
                     "
     gene            1517..2128
                     /locus_tag="VHN39_07170"
     CDS             1517..2128
                     /locus_tag="VHN39_07170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEX2816157.1"
                     /translation="MTFYPTDRLALFIDGSNLYSAAKGLGFDIDYRKLLEEFRKRGVL
                     IRAYYYTALVEDEEYSPIRPLVDWLDYNGYSLVTKAARQYTDSQGRKRWRGDMDVEIA
                     VDMMEMAAGGADHLVLFSGDGDFRALVEAVQRRGARVTVVSTVKSQPPMASDDLRRQA
                     DNFVDLADLSDIIGRPSRLPRFIQEARTEQRHREDEPEADAEA"
     gene            2115..2783
                     /locus_tag="VHN39_07175"
     CDS             2115..2783
                     /locus_tag="VHN39_07175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEX2816158.1"
                     /translation="MPRPEAGFSPEPPRDCPLCPRLVAYRAVNAAAHPNWFNGPAPSW
                     GDETARLLVAGLAPGRQGANRTGRPFTGDHAGWLLYATLKKTGFATGTYDPDGDDDLK
                     LTDCMISNAVRCAPPGNKPETSEEANCRPFLAARIAALPRLKVIVTLGDVSRRNVLRA
                     LGLKASAGLPGHGTEFPAGPYVVLNSYHCSRLNTNTGRLTPAMFEAVFERARTLLDRA
                     PAGV"
     gene            complement(3017..3259)
                     /locus_tag="VHN39_07180"
     CDS             complement(3017..3259)
                     /locus_tag="VHN39_07180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HEX2816159.1"
                     /translation="MIAWLVIGAIAGWLAGTFVRGGGFGLLGDIVVGIIGAFIGGWLA
                     GVLHIHVGTGWVSAIITGFVGASLLLIILRAVRRRA"
BASE COUNT          571 a         1277 c         1256 g          536 t
ORIGIN      
        1 atcatgatcc tgggcctggt cggcgtcgga gcctccctgc gccgtcgccg atggacggct
       61 tcgcagcccg cctagccggc gaccgcggcg gggttactca gacctcgttc accacaatag
      121 gttgcaaaac ctcaacggat aggggtgcaa gctggcggct tcgttccggc tggagtcctc
      181 gatgccgccc gcgcccgccg ccgcccgtca ggatctgcgc ttcccctggg agccggagtc
      241 ggtgaaccgc gcgaacctcg cgacggctgc cctgcgccag ctcatgctgc agcgcgtgcc
      301 gacgcgcgga ccccagaccc tgctgatcgc cgccggctct ctggtgggct tcgcggcgca
      361 gaactcggcg ctggaacagg gcgaactgct gaccgcgcga cgcgatctgg tggcgccgga
      421 aagcctgatg cttcgccaga acgaacatcg ccagaggttc ctgatgggac gctggatcaa
      481 cgccccgctg ctgctcggat acggccacgg ctttccgctg cagcggttcg tgatccaggc
      541 ggcggccgcg gcgggtgtcg gccgcaacca gttcccggac tattgggaga tggagcgtcg
      601 cgtcgccaag gacgcgctcg acggggtgtt cgggacgctg gagcccggcg agggccgcga
      661 gcggatggcc cggccgcagg acacgctgaa ggcgctctgg gcgccggcgc ggcgcatcct
      721 gaccgccccc atgccgctgg agatgatgga cgagccgatg ctgagcgtcg cccactggcc
      781 caccgccatg tcggtggtgg ccgcccggct gatcgccatg accgccgacg ccgtgccgcc
      841 gctggtcgcc gccgacctgg tgatggaggc ggcgttcatc gcctccaagc tcgacccgga
      901 cctggtggac caggggcggt ggaccctggc gccaagtccg cggggcctgc agatcgcccg
      961 cgatgaccgg cgccggcgcg cgatcgccta gagcggccgc gcatcccgac ccactttcgc
     1021 cgacgccgcc agttccgccg ccgtcagccc gctcaccgga tggcgccagt cgggcgcgat
     1081 ctcggccagg ggacccatga cgaagaggcg gtcgtgggcg cgcgggtgcg gcaggatcag
     1141 gccgggcccg gtgagcacgg cgcggccatg ggcgatgagg tcaagatcga gcgtgcgcgg
     1201 ggcgttgggg acgccgcgcg tcctgccaaa tgaccgctcg atggcaaaaa gcgcctcaag
     1261 aaccgcgtca ggggggccgt ttgcctcgac aatggcgacg ccgttgcgat actcattccc
     1321 ttcaggatcg ggccaggcgg cagagctcca ccagcgcgat cgggccagca cgggcaatcc
     1381 ggcccggggg aattgcgcca gggccgcttc cagcagcgcc tctgaggatt tgaaatcgcc
     1441 ggccaggttg ccgccaaggg ccacgactat tgcgtcgtcc agcccggaac ctttggccat
     1501 tgggaattgc gagacgatga ccttttaccc caccgaccgt ctggcgctgt tcatcgacgg
     1561 atcgaacctc tattcggcgg ccaagggcct gggcttcgac atcgactacc gcaagctcct
     1621 ggaggagttc cgcaagcgcg gcgtgctgat ccgcgcctac tactacaccg ccctcgtcga
     1681 ggacgaggag tactccccta tccggccgct ggtcgattgg ctggactaca acggctattc
     1741 cctcgtgacc aaggctgccc ggcaatacac cgacagccag gggcgcaagc gctggcgcgg
     1801 cgacatggac gtggagatcg ccgtcgacat gatggagatg gccgcgggcg gcgccgatca
     1861 cctggtgctg ttcagtggcg acggagattt ccgggcgctg gtggaagcgg tgcagcggcg
     1921 aggcgcgcgg gtgaccgtgg tctcgacagt gaagtcgcag ccgcccatgg cgtccgacga
     1981 tctgcgccgg caggctgaca acttcgtgga tctggccgac ctgtcggaca tcatcggccg
     2041 gccctcgcgc ctgccgaggt tcatccagga ggcccgcacc gaacaacgcc accgcgagga
     2101 cgaacccgag gccgatgccg aggcctgagg cggggttttc accggagccg ccgcgcgact
     2161 gcccgctgtg ccccaggctg gtggcctatc gggcggtgaa tgccgccgcc caccccaact
     2221 ggttcaacgg cccggcgccc tcatggggcg acgagaccgc gcggctccta gtggcgggcc
     2281 tggcgccggg ccgtcagggc gcgaaccgca cggggcggcc gttcaccggg gaccatgcgg
     2341 gctggctgct ctatgcgacg ctgaagaaga ccgggttcgc gacggggacc tatgacccgg
     2401 acggcgacga cgacctgaag ctcaccgact gcatgatctc caacgccgtg cgatgcgccc
     2461 cgccgggcaa caagccggag accagcgaag aagccaactg ccggccgttc ctcgccgccc
     2521 gcatcgccgc ccttccccgg ctgaaggtga tcgtgacgct cggcgacgtc tcgcggcgca
     2581 atgttctgag ggcgctgggc ctgaaggcct cggcgggcct gccgggccac gggacggagt
     2641 ttccggccgg gccctatgtg gtgctgaaca gctaccactg ctcccgcctc aacacgaaca
     2701 ccgggcggct gacgccggcg atgttcgagg cggtgttcga gcgggcgcgg accttgctgg
     2761 atcgcgcgcc ggccggggtg tagcgtcggg ccctgctgac ccgccgtttg gaggccgacc
     2821 atgtcgcgga ccccaatgct ggccgtagcc gccctcgcaa gcagcctggg ccaggccacc
     2881 ctggccgcgc cgcagtttcc caacgtggtc tacgcgatcg ctccgggacc taggcgtcgc
     2941 ggcgatcgcg gccccagagg tggcttcagc ggccaggttc ggcagacggc gggtcggggg
     3001 actatccgct ggagagctag gctcgccttc ggaccgcgcg cagaatgatg agcaatagcg
     3061 aggcgcccac gaagccggtg ataatcgcgg aaacccaccc ggttccgacg tgaatatgta
     3121 agaccccggc cagccagccg ccgatgaagg cgccgatgat gccgaccacg atgtcgccca
     3181 ggaggccgaa gccgcctcct cggacgaagg tccccgccaa ccagccggcg atcgcgccga
     3241 tgaccagcca ggcaatcaag ctgtgagagt ccatgaggtg tccgccctgt tcgtcgggat
     3301 ttcccgaatg cggcggcccg gccgcctgcc cagcgactaa gcttgggcgg tggaaaaggt
     3361 tcccggcgga ccgtccggcc cttgtccgca cccggccgaa agccgacact cccccggcgc
     3421 agatcgggtc tgcgcgatct ccctttcaat tggattccca gccttgcaaa ccaagacctt
     3481 actcggcctc gccaccgtgg ccgccctgct ctccacgtcc gcgctggccg cgcccgatcc
     3541 ggccctgcat gcccaggcgc tggagctgct gaccaagggc atcgccttcc gcaccgtgat
     3601 cccgggcgac caggtcccgg tctacgcggc ctatctgaag
//
LOCUS       DATAJL010000371         1976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_6651,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000371 DATAJL010000000
VERSION     DATAJL010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6651"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1818)
                     /locus_tag="VHN39_07185"
     CDS             complement(<1..1818)
                     /locus_tag="VHN39_07185"
                     /inference="COORDINATES: protein motif:HMM:NF005866.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase/succinate dehydrogenase
                     flavoprotein subunit"
                     /protein_id="HEX2816160.1"
                     /translation="MPVHETHEHDVLIIGAGGAGLRAAIEAASGGLSVGLVCKSLLGK
                     AHTVMAEGGVAAAMAHVDDRDSWKVHFSDTMRGGQYLNNWRMAELHAKEAPDRVRELE
                     AWGAVFDRTKDGRILQRNFGGHRYPRLAHVGDRTGLEMIRTLQDHGVHQGFKVYMEHT
                     ITKLFVDAGRIAGAFGYDRERGNLRVFKAKAVVLATGGVGRAFKITSNSWEYTGDGYA
                     LAYDAGADLMDMEFIQFHPTGMVWPPSVKGILVTEGVRGEGGVLRNKDGKRFMFNDIP
                     ENYKAQTADSEEEGWKYTQGDKNSRRPPELLTRDHVARMITKEVREGRGSPHGGVFLD
                     IAWIKERLPKGAEHIKKKLPSMYHQFKELADIDITEVPMEVGPTTHYTMGGVRVDGDT
                     QMTTVPGLFAAGECAAGLHGANRLGGNSLSDLLVFGKRAGEHAAKFARDRAAASIDQT
                     AIDAAERMALAPFERAAAGGDAEAPYKIQYELQDLMQDNVGIVRNEADIRKALEGIQG
                     LKARAAKVASAGNREYNPGWHTCMDLANLVTVSEALTRCAIERKESRGGHFREDHPDK
                     DPNFSTFNHVVRKGTGGRPELLTRDHVARMITKEVREGRG"
BASE COUNT          279 a          665 c          663 g          369 t
ORIGIN      
        1 gccgcgcccc tcacggacct ccttggtgat cattcgcgcc acgtggtcgc gggtcagcag
       61 ctcgggccgc ccgcctgtcc ccttgcgcac cacatggttg aaggtcgaga aattcggatc
      121 cttgtcgggg tggtcctcac gaaagtgccc gccgcggctc tccttgcgct cgatcgcgca
      181 gcgcgtcagc gcctcggaga cggtgaccag gttggcgagg tccatgcagg tgtgccagcc
      241 ggggttgtac tcgcggttgc cggccgaggc gaccttcgcc gcgcgcgcct tcaatccttg
      301 aatcccctcg agcgccttcc ggatgtcggc ctcgttgcgc acgatgccga cgttgtcctg
      361 catcagatcc tgcagctcgt actgaatctt gtagggcgcc tcggcgtcgc cgccggccgc
      421 ggcgcgctcg aacggggcca gcgccatccg ctcggcggcg tcgattgccg tctggtcgat
      481 gctggcggcg gcgcggtcgc gcgcgaactt ggcggcgtgc tcgccggccc gcttgccgaa
      541 caccaggagg tccgacagcg agtttccgcc taagcggtta gcgccgtgca aaccggcggc
      601 gcactcgccc gccgcgaaca gcccagggac ggtggtcatc tgcgtgtcgc catcgacgcg
      661 gacgccgccc atcgtgtagt gggtggtcgg accgacctcc atcgggacct cggtgatgtc
      721 gatgtcggcc agctctttga actggtggta catgctgggg agcttcttct tgatgtgctc
      781 ggcccccttg ggcaggcgct ctttgatcca ggcgatgtcg aggaagacgc cgccgtgcgg
      841 gctgccgcgc ccctcacgga cctccttggt gatcattcgc gccacgtggt cgcgggtcag
      901 cagctcgggc ggacggcggg agttcttgtc cccctgggtg tacttccagc cttcttcttc
      961 gctgtcggcc gtctgcgctt tgtagttctc cgggatatcg ttgaacatga agcgcttgcc
     1021 gtccttgttg cgcaggacac cgccttcgcc gcgaacgccc tcagtgacga ggatcccctt
     1081 caccgacggc ggccagacca tcccggtcgg gtggaactgg atgaactcca tgtccatcag
     1141 atcggcgccc gcgtcgtagg ccagcgcgta gccgtcgccg gtgtactccc agctgttgct
     1201 ggtgatcttg aaggcgcgcc cgacgccgcc ggtggctagg acgacggcct tggccttaaa
     1261 gacacgcagg ttgccgcgct cgcggtcgta gccgaacgcg ccagcgatcc gcccggcgtc
     1321 gacgaacagc ttggtgatcg tgtgctccat gtagaccttg aagccctggt ggacgccgtg
     1381 gtcttgaagc gtgcggatca tctccaggcc ggtgcgatca ccgacgtgcg ccaggcgcgg
     1441 gtagcggtgg ccgccgaagt tgcgctgcag gatgcgcccg tccttggtgc gatcgaagac
     1501 ggctccccag gcctcgagct cgcgcacgcg atcgggcgcc tccttggcgt gcagctcggc
     1561 catccgccaa ttattgaggt actgcccgcc gcgcatggtg tccgagaagt ggaccttcca
     1621 gctgtcgcga tcgtcgacgt gggccatcgc cgcggcgacg cccccctcgg ccatgaccgt
     1681 gtgagccttg ccgagcaacg acttgcagac caggcccacc gaaaggccgc ccgacgccgc
     1741 ctcgatggcc gcgcgcagac cggcgccacc ggcgccgatg atcagaacgt cgtgctcgtg
     1801 ggtctcgtga acgggcattt agaagatcct caggtcggtg atgacgccca tcgcgcagag
     1861 gcggatgtag atgtcagtga gcgccacgga gaagaggctg caccaggccc acttggcgtg
     1921 gtgccggttg aagcagctcg cgcagtcgta ggccttcttg cgcagaggcg ccttcg
//
LOCUS       DATAJL010000372         2105 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45309,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000372 DATAJL010000000
VERSION     DATAJL010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45309"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..434
                     /locus_tag="VHN39_07190"
     CDS             <1..434
                     /locus_tag="VHN39_07190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEX2816161.1"
                     /translation="WTLQPVSMSTISPSAEQRRVWDTEKAAQAAGFAAVKPGVPCEEI
                     DATARRVLEAAGYGPDYALPGLPHRTGHGIGLSIHEAPYLVRGDKTPLAPGMCFSNEP
                     MIVLPETFGVRLEDHFYVTEAGAAWFTEPQPSLDQPFAPTN"
     gene            complement(431..1312)
                     /locus_tag="VHN39_07195"
     CDS             complement(431..1312)
                     /locus_tag="VHN39_07195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2816162.1"
                     /translation="MTLATGGGTFQIGGDLPVNRMGFGAMQLTGPGVWGPPQDPVGAR
                     AVLRRAVELGVNFIDTADVYGPGDNERVIREALHPYPAGLVIASKGGLVRSGPATREN
                     PGMSMNGTQAHIRRAVEGSLRDLGVERIDLYQLHRVDPATPIEETMGVFKALRDEGKI
                     RHIGLSEVSVEQIERAQSVVEIATVQNIYNLAVRNHAEVLAYCERNAIGFIPFWPLHI
                     EAVAGSETLTRIAGETAATPSQVALAWLLKRSAVTILIPGTSSLAHLEENVAAAGLEL
                     SEARMQALEALGGIVAR"
     gene            1386..1787
                     /locus_tag="VHN39_07200"
     CDS             1386..1787
                     /locus_tag="VHN39_07200"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX2816163.1"
                     /translation="MLISEFARRAGLTPDAVRFYVRLGLLRPEASAKGGARPYQVFTA
                     EHLQAAMIIRTAQSLGMSLKEIAAISHERRAGRMTRERSVEVLSAQFDRLERKAAELV
                     AMKSYLQAKVAWLKGGEKGPPPNFGAFAKAA"
     gene            complement(1784..>2105)
                     /locus_tag="VHN39_07205"
     CDS             complement(1784..>2105)
                     /locus_tag="VHN39_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional regulator KidO"
                     /protein_id="HEX2816164.1"
                     /translation="IHLRSIFLNGLLFLPPDRAPTHLKAAAGRISRARRLIAEGRSDP
                     LQAALGFALSRPEASCVLVGVASASEMSAVVAAAMSPPPDLDWDEMALDDPDALDPRA
                     WAAA"
BASE COUNT          333 a          753 c          700 g          319 t
ORIGIN      
        1 cctggacctt gcagccggtg tcgatgagca cgatctcgcc gtccgccgaa cagcgccgcg
       61 tctgggacac cgagaaagcc gcccaggccg ccggcttcgc cgccgtgaag ccgggcgtcc
      121 cctgcgagga gatcgacgcg acagctcgcc gcgttctcga agccgccggc tacggcccgg
      181 actacgcgct ccccggcctg ccccaccgaa ccggccacgg catcggcctt tccatccacg
      241 aagcgcctta cctggtgcgc ggcgacaaga ccccgctcgc gccgggcatg tgcttctcca
      301 acgaacccat gatcgttctg cccgagacct tcggcgtccg cctcgaagac cacttctacg
      361 tcacggaagc cggcgccgcc tggttcaccg agccgcagcc cagcctggac cagccgttcg
      421 cgcccacgaa ctaacgcgcg acgatccccc cgagcgcctc cagcgcctgc atccgagcct
      481 cggaaagctc gaggcccgcg gccgccacgt tctcctccag gtgcgccagc gaagacgtac
      541 ccgggatcag gatggtcacg gccgaccgtt tcagcagcca ggccagcgcc acctgcgacg
      601 gcgtcgccgc tgtttcgccc gcgatacggg tcagggtctc ggaacccgcc acggcctcta
      661 tgtgcagcgg ccagaacgga atgaagccga tggcgttgcg ctcgcaatag gccagcacct
      721 cggcatgatt gcggacggcg aggttgtaga tgttctgcac cgtcgcgatc tcgaccacgg
      781 actgcgcccg ctcgatctgc tccacgctca cctccgacag gccgatgtgg cggattttcc
      841 cttcgtcgcg cagagccttg aaaacgccca tcgtctcttc gatcggcgtg gccggatcga
      901 cgcggtggag ctgatagagg tcgatgcgtt cgacgcccag gtcgcgcagg ctgccttcga
      961 cggcccggcg gatatgcgcc tgcgtcccgt tcatcgacat gcccgggttc tcgcgggtcg
     1021 cgggaccgct gcggaccagg ccgcccttgc tggcgatgac caggcccgcc ggataggggt
     1081 gcagcgcttc gcggatcacc cgctcgttgt cgccggggcc gtagacgtcg gcggtgtcga
     1141 tgaaattgac gcccagctcg accgcgcggc gcagcaccgc ccgcgcgccc actggatcct
     1201 gtggcggtcc ccagactccg gggccggtga gttgcatcgc cccgaaaccc atccggttca
     1261 ccggcagatc gccgccgatc tggaacgtcc cgccgcctgt cgccaatgtc atcgccgtat
     1321 cccttcgctt tgttacggca catcctgtaa gtatggacca tggtccatgg tcaagagcca
     1381 atttgatgct gatctcggaa ttcgcccggc gcgccggact gacgccggac gccgtacgct
     1441 tctatgtgcg gcttggcctg ctgcggcccg aggcgagcgc caagggcggc gcccggccct
     1501 atcaggtctt cactgccgag cacctgcagg ccgcgatgat catccgcacg gcgcagtcgc
     1561 tcggcatgtc gctgaaagag atcgccgcta tcagccacga acggcgcgcg ggccgcatga
     1621 cccgcgagcg cagcgtcgag gtgctatcgg cgcagttcga caggctggag cgcaaggccg
     1681 ccgaactggt cgccatgaag agctatctgc aggccaaggt cgcgtggctg aagggcggcg
     1741 agaagggtcc gccgcccaac ttcggagcgt ttgcgaaggc ggcttaggcc gcggcccagg
     1801 cgcgggggtc cagcgcgtcg ggatcgtcaa gcgccatctc gtcccagtcg aggtccggcg
     1861 gcgggctcat ggcggcggcc accacggcgg acatctcgga ggccgaggcc acgcccacca
     1921 ggacgcagga ggcttccggc cgcgagaggg caaagcccag ggcggcctgc agcgggtcgg
     1981 agcggccttc ggcgatcagg cggcgcgcgc ggctgatccg gccggcggcg gccttcagat
     2041 gggtcggcgc cctgtccggc ggcaggaaca gcaggccgtt caggaagatc gagcgcagat
     2101 ggatc
//
LOCUS       DATAJL010000373         2426 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45357,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000373 DATAJL010000000
VERSION     DATAJL010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45357"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            207..282
                     /locus_tag="VHN39_07210"
     tRNA            207..282
                     /locus_tag="VHN39_07210"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:240..242,aa:Ile,seq:cat)
     gene            complement(793..>2426)
                     /locus_tag="VHN39_07215"
     CDS             complement(793..>2426)
                     /locus_tag="VHN39_07215"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2816165.1"
                     /translation="WTAVMQQVETGKISLDADVNQYLDFKIPPYDGKPVTMRDLMTHT
                     AGFAETIKHLFPADAKALLPLDRFISSWTPNRIFPPGEVPAYSNYGAALAGYIVQRTS
                     GEPFDQYVAHHIFAPLGMNHSSFTQPLQPNLLAGMASGYLRASGPPQPYEFVGPAPAG
                     SLATTGDDVSRFMIAHLNNGQFGSVRILQDATARQMHAPQRQFVPPLNGMALGFYHED
                     RNGHVVIGHGGDTVAFHSDLHLLPNDNIGIFISMNSAGKDGLVENVRENLLSSFMDRY
                     FPAPQPILATTPTAKSDAALTQGMYWSSRRVDSGFLRLTGLLGQVKVAANKDGTLVVS
                     AFKDDSGASLVWREVGHFLWKDASGKHALAAVVKDGKVVHFSEDDFGAIMVFQPVPFA
                     ASSSWNLPLLGGMVGVMLLMLALWPVQAVVRRRYGRAFPLSGRTAQLYRAVRVTALLD
                     LIALGGFVAIVQATGTKLALFDYPLDIWLRLLQVLCLLGVIGAGLSVWNAVRVWTEAG
                     RSWWAKTSVTMTMIALLAFVWFVVSLQLISPSLNY"
BASE COUNT          443 a          753 c          835 g          395 t
ORIGIN      
        1 accaacgacg cctcgcgcgg cgtcggctgg gcgtcgggcc cgatccccgg caagggcctg
       61 gtctacgccg ccatgatgga gggcgaccgg gccttccccg gccggatgat ggctgaccgg
      121 ctcgcccgcg ccttcaagga cgccggcctc tagcgcttta aggcccaacc cgcgcgtgct
      181 aaccgcgagc ctcagcgtcg ctgctggggc ctgtagctca atggttagag ccggccgctc
      241 ataacggtct ggttgcaggt tcgagtcctg ccgggcccac cagcgagctt ccattggcgt
      301 ccactcaccg ccacggactt ggaaaaagaa caacaaatac aaattgtttt gtccaccgat
      361 ggatttcgga ggccaatggc atccccgaaa agtgttggta cggaatcggc gacataccaa
      421 cacatcgccg aattatacca acagatgccg ctacccgacg cccggctgag gagcctcaag
      481 gggtcctcga agacacagaa gctggccgac ggtggtggcc tccacgtcgt cgtgacgccg
      541 ggcggtgctc ggttgtggcg gcttggtatc tgggaaccgg agcccgtcca cccagacggc
      601 gatgtgggtc ctgccagctc gcccacgctc accttgagcc gctgatcaag agtcagcggg
      661 gtgggtcggg tcgcaaagag attcgccatc gaaaggccga ccccgaatgc cgccgactca
      721 cgccgatcct tgcagactcg cgaggacctg gaccatgggg ttggcgcatc ggggcaagcg
      781 cagaggggtc gactagtagt tcaggctcgg gctgatcagt tgcaggctga cgacgaacca
      841 gacgaaggct agcagggcga tcatggtcat cgtgaccgag gtcttggccc accagcttct
      901 ccccgcctca gtccagaccc gaaccgcgtt ccacaccgac aggccggcgc cgatcacgcc
      961 cagcaggcag agcacctgca gcaggcgcag ccagatatcc aacggatagt cgaagagggc
     1021 gagcttggtc ccggtcgcct gcacgatggc gacgaagccg ccgagcgcta tgagatcgag
     1081 cagggcggtg acccgcaccg cgcggtagag ttgagcggtg cggcccgaca aggggaaggc
     1141 gcggccatag cgtcggcgca cgaccgcctg gaccggccac agcgccagca tcagcagcat
     1201 cacgccgacc atcccgccca gcagcggcag gttccaggag gagctggctg cgaacggcac
     1261 gggctggaac accatgatgg caccgaagtc gtcctcgctg aaatggacca ccttgccatc
     1321 cttcaccacc gccgccaggg catgcttgcc gctggcgtcc ttccagagga agtgcccgac
     1381 ttcgcgccag accagcgacg cgccggagtc gtccttgaag gcggagacta ccagggtccc
     1441 gtccttgttg gcggcgacct tgacctggcc aaggaggccg gtgaggcgca ggaagccgct
     1501 gtccacccga cggctggacc aatacatgcc ctgcgtcagg gccgcgtcgg acttcgccgt
     1561 tggagttgtc gccaggatgg gctggggcgc ggggaaatag cggtccatga agctgctcag
     1621 caggttctcg cggacgtttt caaccaggcc atccttgccg gcgctgttca tcgagatgaa
     1681 aatcccgatg ttgtcgttgg gcagcaggtg caggtcggag tggaacgcga ccgtgtcgcc
     1741 gccgtggccg atgacgacat ggccgttgcg gtcctcgtga taaaagccca gcgccatgcc
     1801 gttgagcggc ggcacgaact gccgttgcgg cgcgtgcatc tgtcgcgcgg tggcgtcctg
     1861 caggatgcgg actgagccga actgcccgtt gttcaggtgg gcgatcatga aacgcgagac
     1921 gtcgtcgcca gtggtggcca ggctgcccgc cggggcgggg ccgacgaact catagggctg
     1981 cggcgggccg gacgccctca ggtagcccga ggccattcct gccagcaggt tcggctgcag
     2041 cggctgggtg aagcttgagt ggttcatgcc caacggcgcg aagatgtgat gggcgacgta
     2101 ctggtcgaag ggttcgcccg aggtgcgctg gacgatgtag ccggccagag cggcgccata
     2161 gttggaatag gccgggacct caccgggcgg gaagatgcgg ttcggtgtcc aggaggagat
     2221 gaacctgtcg aggggaagca gggccttcgc atcggcaggg aacaggtgct tgatcgtctc
     2281 ggcgaagcct gcggtatggg tcatcaggtc gcgcatggtg accggcttgc cgtcgtaggg
     2341 cgggatcttg aagtcgaggt actggttgac gtcggcgtcg aggctgatct tgcccgtctc
     2401 gacctgctgc atcacggcgg tccagg
//
LOCUS       DATAJL010000374         3474 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19576,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000374 DATAJL010000000
VERSION     DATAJL010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3474
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19576"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            250..855
                     /locus_tag="VHN39_07220"
     CDS             250..855
                     /locus_tag="VHN39_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816166.1"
                     /translation="MSRQPEKQARAEAMLGELAELGLMVARELAVRVRGSEVVEETVA
                     LAGAFQKVSRVVRLTLALDAKLEREAARDAAAEAREAKEAAAQAETQAAHEAPTAYEQ
                     RQADPVEARKTRVSNLLNRLLWNESEGDSEEFEVLSDDLTSRLEEAARCDDFTTLPIE
                     VIARRVVADMGLSGELTLSLCEAPPAHVQAPQRTPEPADTG"
     gene            complement(930..1451)
                     /locus_tag="VHN39_07225"
     CDS             complement(930..1451)
                     /locus_tag="VHN39_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HEX2816167.1"
                     /translation="MSLSFYDISIPTYDRMLRNLSVFLDKAEAHAKEGGIDLKTYTEA
                     SLGHGMFNFTRQIQLASDAAKGGAARLAGVEAPAMPDTETTFPELKDRIAKTLAFIQS
                     IERGQVDGQEGRQITLTLPTRSMEFTGESFLNTFSLPNFLFHVTTAYAILRAQGVPLG
                     KMDYLAGAQMAAA"
     gene            1544..2494
                     /locus_tag="VHN39_07230"
     CDS             1544..2494
                     /locus_tag="VHN39_07230"
                     /inference="COORDINATES: protein motif:HMM:NF014476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase family protein"
                     /protein_id="HEX2816168.1"
                     /translation="MRLIDADEVRANLTYEVCIPVVRAAMIALSRGETRQLLRSIMHF
                     DDGRMFGVMPGAMGDTAVFGAKVLSVFPKNFEVGRPSHQGVVLMFDPQSGELACVAEA
                     QSITAIRTAAASAVATDALARPEARRLAVLGYGDQAEAHLTAMTKIRPLERVAVWGRS
                     LERAKAFAARMGPELGIEARAIATAQEAVADADIICTVSAAAEPILKGAWVAPGTHVN
                     LVGSSFAGPVEADDDLVVRSRFIADYREGVLKQGAEFLKAKQAGLIGDDHVVGEIGEV
                     LAGTLEGRQSADQVTVYKSLGHIVQDLASVQALLAIPPKS"
     gene            complement(2491..>3474)
                     /locus_tag="VHN39_07235"
     CDS             complement(2491..>3474)
                     /locus_tag="VHN39_07235"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="membrane dipeptidase"
                     /protein_id="HEX2816169.1"
                     /translation="GRHPSVDIHAHPGRFFLRDLARQNATTRAMGPSFEAKALTDMGV
                     GHVTAALFNCVSDAVLLEQSPTKGLVAAREFDPGEAWADYQRQIGTLKALVARGDAAP
                     GLDGRDIARALAAHRTACVFAVEGGDFIEDRLERVHTAYADGVRSVTIVHYHPNQIGD
                     PQTETPRFPGLTPLGKDIVRELNRTGIIVDLAHSSLGVTRDAVEIAGKPMMISHTNLK
                     RPDLDHPRLVSVEHAKLVTSHGGIVGSVPSGIGQKTAADWIASILRLVDAVGIDHVAI
                     GTDMDANYMPVFADYADWPLIPAALLAGGMHEGEVAKVMGGNFLRVLAAQH"
BASE COUNT          547 a         1140 c         1261 g          526 t
ORIGIN      
        1 ggtgaggtgg aactccgcat cgcgctgggc gatgacggcg cggtcgaggc ggtgagcctg
       61 cggccgctgt cgtagggccg gcgacggcga ggcgcgcggc ggcctgatcg ttacggcgat
      121 ttcactggcg gggctcgaag ccaaactggc cgccatgaga ttcaagccgc agcctgccgg
      181 gtaattccca cgacgccgca ccttctaaaa acttgactcc catccctttt gatgttcttc
      241 ttttgttcca tgtcgcgtca accggagaaa caggcccgcg ccgaggccat gctgggagag
      301 ctcgccgagc tcggcctgat ggtggcgcgc gagctggcgg tgcgggtgcg cggaagcgag
      361 gttgtggaag agaccgtggc cctggccggc gccttccaga aggtctcccg cgtggtgcgc
      421 ctgacgctgg cgctcgacgc caagctggag cgggaagccg cccgcgacgc cgccgccgag
      481 gcgcgtgaag cgaaggaggc tgcggcgcag gccgagactc aggcggcgca cgaggcgccc
      541 accgcctatg aacagcgcca ggccgacccg gtcgaggcgc gcaagacacg cgtgagcaac
      601 ctgctcaacc gcctgctgtg gaacgagagc gagggcgaca gcgaagaatt cgaggtcctg
      661 tcggacgacc taaccagccg cctcgaagaa gccgcccgct gcgacgactt tacgacactg
      721 cccatcgagg tcatcgcccg ccgcgtcgtc gccgacatgg gcctctcggg cgagctgacc
      781 ctcagtctat gtgaggcgcc gcccgcacac gtccaggcgc cgcagcggac gcccgagccg
      841 gccgatacgg gctaagcctc aacgcctcag aagagatcgc ccctccccgc aagggagagg
      901 ggcgagtgag catgcctggc gctggagctt taggccgccg ccatctgcgc gccggccagg
      961 tagtccatct tgcccagcgg cacgccctgc gcgcgcagga tcgcgtaggc cgtggtcacg
     1021 tggaacagga agttcggcag ggagaaggtg ttgaggaagc tctcgccggt gaactccatg
     1081 ctgcgggtcg gcagggtgag cgtgatctgg cggccctcct ggccgtctac ctgcccgcgc
     1141 tcgatcgact ggatgaaggc cagcgtcttg gcgatgcggt ccttcagctc gggaaaggtg
     1201 gtctcggtgt cgggcatggc cggcgcctcg acgcccgcca ggcgggccgc gccacccttg
     1261 gccgcgtcgc tggccagctg gatctgccgg gtgaagttga acatgccatg gccgaggctc
     1321 gcctcggtat aggttttcag atcgatgccg ccttccttgg cgtgggcttc ggccttgtcg
     1381 aggaagaccg agaggttgcg cagcatgcga tcgtaggtgg ggatcgagat gtcgtaaaac
     1441 gaaagggaca agggcgtttc tccaaaggca aggctgtcag atagggtggc ggcaaggccg
     1501 cgaccacctg gcgtcgcaac aacttcatgg agagctgagc gccatgcgcc tgatcgacgc
     1561 cgacgaggtc cgcgccaacc tgacctacga ggtctgcatt cccgtggtcc gcgcggcgat
     1621 gatcgcgctc tcccggggcg agacgcggca gctgctgcgc tcgatcatgc acttcgacga
     1681 cgggcggatg ttcggggtga tgccgggcgc catgggcgac accgcggtgt tcggggccaa
     1741 ggtgctgagc gtcttcccga agaacttcga ggtcggccgg ccctcgcacc agggcgtcgt
     1801 gctgatgttc gatccgcaga gcggcgaact cgcctgcgtc gccgaggccc agtcgatcac
     1861 cgccatccgc accgccgcgg ccagcgcggt ggcgaccgac gccctggccc ggcccgaagc
     1921 gcggcgcctg gccgtgctgg gctatggcga tcaggccgaa gcccacctta ccgccatgac
     1981 caagatccgg cccctggaac gagtggctgt ctggggtcgt tcgctggagc gggcgaaggc
     2041 ctttgccgcg cggatgggcc ctgaactcgg gatcgaggcc cgcgccatcg cgaccgccca
     2101 ggaggccgtg gccgacgccg acatcatatg caccgtcagc gcggccgccg agccgatcct
     2161 gaagggcgcc tgggtcgcgc cgggaaccca cgtcaacctg gtcggctcca gcttcgccgg
     2221 gccggtggag gccgacgacg acctggtcgt gcgctcgcgc ttcatcgccg actaccgcga
     2281 gggcgtgctg aaacagggcg cggagttcct caaggccaag caagctggac taataggcga
     2341 cgaccatgtg gtgggcgaga tcggcgaggt gctggccggg acgcttgagg gccggcagtc
     2401 ggcggaccag gtcaccgtct acaagtcgct gggccacatc gtgcaggacc tggccagcgt
     2461 ccaggcgctg ctggcgatcc cgccgaagag ctaatgctgg gcggcgagca cgcggaggaa
     2521 gttgccgccc atcaccttgg cgacctcgcc ctcgtgcatc ccgccggcaa gcagggccgc
     2581 cgggatcagc ggccagtcgg catagtcggc gaagaccggc atgtagttgg cgtccatgtc
     2641 ggtgccgatg gccacgtggt cgatccccac cgcatcgacc agccgcagga tggaggcgat
     2701 ccagtcggcc gccgtcttct ggccgatgcc cgacggaacg gagccgacga tgccgccatg
     2761 gctggtgacc agcttcgcgt gctcgacgct gaccagccgc gggtggtcga ggtcggggcg
     2821 cttgaggttg gtgtgcgaga tcatcatcgg cttgccggcg atctccaccg cgtcgcgggt
     2881 gacgccaagc gagctgtgcg ccaggtcgac gatgatcccg gtcctgttca gctcacgcac
     2941 gatgtccttg ccgagcggcg tcaggccggg gaaccgcggc gtctcggtct gcgggtcgcc
     3001 gatctggttg gggtgatagt ggacgatggt gaccgagcgg acgccgtcgg cgtaggcggt
     3061 gtgaacccgt tccagccggt cctcgatgaa gtcgcccccc tcgacggcga agacgcaggc
     3121 cgtgcggtgg gcggcgagcg cgcgggcgat gtcgcgcccg tcgaggcccg gcgcggcgtc
     3181 gccgcgggcg accagcgcct tcagggtccc gatctggcgc tggtagtcgg cccaggcctc
     3241 gcccggatcg aactcgcggg cggccaccag ccccttggtc ggcgactgct ccagcaggac
     3301 ggcgtcggac acgcagttga acagcgccgc cgtgacgtgg ccgacgccca tgtcggtcag
     3361 cgccttggcc tcgaaggatg gccccatcgc ccgggtcgtg gcgttctgcc gggcgaggtc
     3421 gcgcaggaag aaccggccgg ggtgggcgtg gatatccacc gagggatgcc gacc
//
LOCUS       DATAJL010000375         1927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106056,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000375 DATAJL010000000
VERSION     DATAJL010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106056"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1068)
                     /locus_tag="VHN39_07240"
     CDS             complement(<1..1068)
                     /locus_tag="VHN39_07240"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEX2816170.1"
                     /translation="MLALILALFAVGPSTQNRTPQPLPQTDSAAEAPGRTVSPITVTG
                     KTDKGAPVAVVIDMPSDDTARGEFVSVWPAKAYRNGTEGRVTLRCRINIHGLAEVCGV
                     QSESPDGQGFGAAAMQLRPTFKLKPIKGPDGGPNETQVDIAVKFHPPRRELDLENLTK
                     GDDTGGQNPFSRGDPHNNVILSDRTFIGNPLPPHTVTMLSKPVWAAAPGFDDVARAYP
                     AKGAGAEGYAVAHCQVVAGGDLKRCVVVKETPSDVGFAKAALTLTDRFKVVPELSTPP
                     TRAELWVDIPIRLPPPDAQTDRTIQAPHWLTDIGAAPTVFPAQAAARGVTSGVGVVDC
                     VVGPGGVMTQCAPGPGAPDGLG"
     gene            1278..>1927
                     /locus_tag="VHN39_07245"
     CDS             1278..>1927
                     /locus_tag="VHN39_07245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816171.1"
                     /translation="MPQTKILAAIGALALAAVTFARPALALEVDGVFTAFVTSDADPT
                     VWNGAQFGDQITGSFHYDTAFLPPNDPFCASHGRGCYFATNPAHSFLSIHMTLDGVTY
                     DFADDQSTTLDIGDFIQTLPGFQFDQFTAGAVGAVQVTGGGAPGPSVGSAFVQVFPFR
                     QIFTSGDPSQTFAVTEADFHGTSANTATLGGKLLGFSTTSMSDSIAGASAVPEPSG"
BASE COUNT          265 a          655 c          705 g          302 t
ORIGIN      
        1 gcccaggccg tccggcgcgc cggggccggg cgcgcactgg gtcatgacgc cgcccggacc
       61 caccacgcag tcgacgacac ccacgccgct ggtcaccccg cgcgcggccg cctgggccgg
      121 gaagacggtg ggcgccgcgc cgatgtcggt cagccagtga ggcgcctgga tggtgcggtc
      181 cgtctgggcg tcgggcggcg gcaggcggat cggaatatcg acccacagtt ccgcgcgggt
      241 cggcggcgtc gaaagctccg ggaccacctt gaacctgtcg gtgagggtga gcgcggcctt
      301 ggcgaagccg acgtcgctgg gggtctcctt gacgacgacg cagcgcttga ggtcgccgcc
      361 ggccacgacc tggcagtgcg cgaccgcata gccctccgcg ccggcgccct tggcgggata
      421 ggcgcgcgct acgtcgtcga agccgggtgc ggcggcccag accggcttcg agagcatggt
      481 cacggtgtgg gggggcaggg gattgccgat gaaggtccgg tcgctgagga tgacgttgtt
      541 gtgggggtcg ccgcgcgaga aggggttctg cccacccgtg tcgtccccct tcgtcaagtt
      601 ctcgaggtca agctcgcgcc gtggcgggtg gaacttcacc gcgatgtcca cctgggtctc
      661 gttgggtccg ccgtccggtc ccttgatggg cttcagtttg aaggtcgggc gcagctgcat
      721 ggccgcggcg ccgaagccct ggccgtcggg gctctcggac tggacgccgc agacctcggc
      781 caggccgtgg atgttgatcc ggcagcgcag cgtcacccgt ccctctgtgc cgttgcggta
      841 ggccttcgcc ggccagaccg acacgaactc gccgcgggcg gtgtcgtcgg agggcatgtc
      901 gatgacgacg gcgaccgggg cgcccttgtc cgtcttgccg gtgacggtga tcggcgagac
      961 ggtgcggccg ggcgcctccg cggcggagtc ggtctgcggc aggggctgcg gcgtgcggtt
     1021 ttgggttgaa gggccgacgg cgaagagagc cagaatcaga gccagcatcg gttttcccgc
     1081 ctgtttccgc cgttggtgag cgaagcctgt catggacgca ggcgattgga tagcgcccgc
     1141 cgccggccac ggcacggtcg cgcctagtcc atctggacca atccaaggcg aggcgcgcgg
     1201 cccatcctag gggcccgacc gcaatgacgg ggcgccgcgc cgggacaggc gccgccccgc
     1261 gaacgagacc tggacccatg ccgcaaacga aaatactggc cgcaattgga gccctggcgc
     1321 tggccgccgt gaccttcgcc cggcccgcgc tggcgctgga ggtcgacggg gtgttcacgg
     1381 ccttcgtgac ctccgacgcc gatccgaccg tctggaacgg ggcgcagttc ggcgaccaga
     1441 tcaccgggtc cttccactac gacaccgcct tcctgccgcc caacgacccg ttctgcgcct
     1501 cgcacgggcg cggctgttac ttcgcgacca atccagccca cagcttcctg tcgatccaca
     1561 tgaccctgga cggggtgacc tacgacttcg cggacgacca gagcacgacc ctcgatatcg
     1621 gcgacttcat ccagaccctg cccgggtttc agttcgacca gttcaccgcc ggcgcggtgg
     1681 gggcggtgca ggtgaccggc ggcggcgcgc cggggcccag tgtgggatcg gcgttcgtgc
     1741 aggtcttccc gtttcggcag atcttcacct cgggcgaccc gtcgcagact ttcgcggtca
     1801 cggaggcgga cttccacggg acgtcggcca acaccgcgac cctggggggc aagctgctgg
     1861 ggttctcgac gaccagcatg tcggactcca tcgcaggggc gagcgcggtt ccggagccgt
     1921 ccgggtg
//
LOCUS       DATAJL010000376         3141 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_6762,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000376 DATAJL010000000
VERSION     DATAJL010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3141
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6762"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..392)
                     /locus_tag="VHN39_07250"
     CDS             complement(<1..392)
                     /locus_tag="VHN39_07250"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2816172.1"
                     /translation="MTALLVDDHPLFREGFAAMLRHHRPDWTLRSVNTAAEALAMLDE
                     DRPDLAIIDIQLPDIDGFDAARAIGERAPLVSRVMISGREDGAARLRSRDCGASGFIS
                     KAWSPERIIEMLEQVLAGGAAFDTPVGAG"
     gene            complement(515..1558)
                     /locus_tag="VHN39_07255"
     CDS             complement(515..1558)
                     /locus_tag="VHN39_07255"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2816173.1"
                     /translation="MAEAILDPDLPIVDPHHHLWDRRNYASPPSAAAAPAHPFITAIA
                     DAQRYLLDELLADTGSGHNVRATVFVECGAMYRADGPVELRSVGETEFVNGVAAMSAS
                     GGYGETRACAGIVSKADLLLGDAVKPVLEAHVKAASGRFRGIRNSASFEADKEVLGPL
                     NRVEEGLYLDKTFRKGFAHLAPMGLSFDAWLLEPQLPDLIDLARAFPETTIVLDHVGT
                     PLGRASYAGRLNERFPTWRDNIRELAKSPKVVVKLGGLAMAFCNFPSFLAEPRAPSEQ
                     LAREWAPYIEACIEAFGPERCMFESNFPVDMGACTYAVLWNAFKRIAKGYSADEKTAL
                     FSGTATKVYRLAY"
     gene            complement(1673..1864)
                     /locus_tag="VHN39_07260"
     CDS             complement(1673..1864)
                     /locus_tag="VHN39_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816174.1"
                     /translation="MALAAVVARTSLNGMEYLVRETGRAEWAPAAQAAARFQTFRDAT
                     RVAMRLPSAMRAYALPAEG"
     gene            complement(1948..2148)
                     /locus_tag="VHN39_07265"
     CDS             complement(1948..2148)
                     /locus_tag="VHN39_07265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816175.1"
                     /translation="MAELTDAQLNALQNLARKKAGDDAPFINISAARALTELGLAERS
                     REGWDITPEGSAELAKRAGPPQ"
     gene            complement(2208..2606)
                     /locus_tag="VHN39_07270"
     CDS             complement(2208..2606)
                     /locus_tag="VHN39_07270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816176.1"
                     /translation="MKPPEGESEPRPATRSSRILGLVAAVGFSIAMWAFIAMAILGLI
                     LKILGPKDTKEGLAAAGASMSQVFNLDSKKTDTDPPNGSTAILEPDAGPITTLDGRAL
                     EPAKSKAPVAREPGTPREAPAQPAPVTGPH"
     gene            complement(2767..>3141)
                     /locus_tag="VHN39_07275"
     CDS             complement(2767..>3141)
                     /locus_tag="VHN39_07275"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012478.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX2816177.1"
                     /translation="YQVLAAGPLGGPHPTRADSVAMRYIGRFEDGQVFSTSPGDGKDL
                     STFAVKEVIPGMSAGLQLMRVGDHWKIRMPSYLAYGPGRAFTPPAGATAAAQAVQKRG
                     IPPDATLVFDVELVAIVPPKAP"
BASE COUNT          472 a         1092 c         1071 g          506 t
ORIGIN      
        1 cccgcgccca ccggcgtgtc gaacgccgcg ccgccggcca gcacctgttc cagcatctcg
       61 atgatccgct ccggcgacca ggctttcgag atgaaccccg aggccccgca gtcgcggctg
      121 cgcagccgcg cggcgccatc ctcccggccg gagatcatca cgcggctgac caggggcgcg
      181 cgttcaccga tggcgcgcgc ggcgtcgaag ccgtcgatgt cgggcagctg gatgtcgatg
      241 atcgcaaggt ccggccggtc ctcgtccagc atcgccagcg cctcagcggc cgtgttcaca
      301 gacctgagcg tccagtcggg ccgatgatgc ctgagcatcg cggcgaaccc ctcccggaac
      361 aggggatgat cgtcgaccag gagcgccgtc accgtcactg gactctaacc cccaaacgcc
      421 aggccgctcg cggactgcgg ttcggtgaat aggatcggcc cgccgcctaa ataggcaata
      481 gcctaaatag gcaggtccct tgggcccgcc ctgcctagta ggccagccgg tagaccttgg
      541 tcgccgtgcc ggagaagagc gcggtcttct cgtccgccga gtagcccttg gcgatgcgct
      601 tgaaggcgtt ccagaggacc gcgtaggtgc aggcgcccat gtccaccggg aagttgctct
      661 cgaacatgca gcgctccggc ccgaaggcct cgatgcaggc ctcgatatag ggggcccact
      721 cgcgggccag ctgctcggac ggcgcgcgcg gctcggccag gaaggatggg aagttgcaga
      781 aggccatggc caggcccccc agcttcacca ccaccttcgg cgacttggcg agctcgcgga
      841 tgttgtcgcg ccaggtcggg aagcgctcgt tgagccgccc ggcatagctc gcccgcccga
      901 gcggcgtccc cacatgatcg aggacgatgg tcgtctccgg gaaggcgcgg gccaggtcga
      961 tcaggtccgg aagctgcggc tccagcagcc aggcgtcgaa gctcaggccc atgggcgcca
     1021 agtgtgcgaa gcccttgcgg aaggtcttgt cgagatagag gccttcctcc acccggttga
     1081 gcggccccag cacctccttg tcggcctcga aggaggccga gttgcggatg ccgcggaacc
     1141 gtccgctggc cgccttcaca tgagcctcca gcaccggctt gacggcatcg cccagcagca
     1201 ggtcggcctt tgaaacgatg ccggcgcagg cgcgggtctc gccgtagccg ccgctggcgc
     1261 tcatggccgc cacgccgttc acgaactcgg tctcgccgac gctcctcagc tccaccggcc
     1321 cgtcggcccg gtacatggcc ccgcactcca cgaagaccgt ggcgcgcaca ttgtggccgc
     1381 tgccggtgtc ggccaagagc tcgtccagca gatagcgctg ggcgtcggcg atggcggtga
     1441 tgaaggggtg ggccggcgcg gcggcagcac ttggcggact cgcgtagttc cgccggtccc
     1501 acaggtgatg gtgcggatcc acgatcggca gatcggggtc cagaatggct tcggccatgg
     1561 tcgctttcct cgcgcgcctc tcaaatgggc ggtgagcagc gatcctcgcc tatctgcggg
     1621 ctgggcggca aaccaaaacg cccccagcct gcaagcgcga cctgaggtct cgtcagcctt
     1681 cggcgggaag ggcgtaggcc cgcatggcgc tgggcaggcg catggccacc cgggtcgcat
     1741 cccggaaagt ctggaagcga gccgcggcct gggcggcggg cgcccactcc gcacgtcccg
     1801 tttcacggac gaggtactcc atgccgttca ggctggtacg cgcgacaact gcggcaagcg
     1861 ccatctcgtg tctccgacgt tcaaggagcc gactgttctg ttacggctca acggggagaa
     1921 atgtttcaag acctgtgccg gagcgcgcta ctgcggcggg ccggcccgtt tggcgagctc
     1981 cgcggagcct tccggggtga tgtcccagcc ctcgcggctg cgttcggcca ggcccagttc
     2041 ggtgagcgcc cgggccgcgc tgatattgat gaacggcgcg tcgtcgcccg ccttcttgcg
     2101 cgccaggttc tgcagggcgt tcagttgcgc gtcggtcagt tcggccatga ccggacccta
     2161 caccctggcc gggtccgcgg cgggatattc agcgctggcc gggggcctca gtgcggaccg
     2221 gtcacaggcg cgggttgggc cggcgcctca cgtggcgtcc cgggctcgcg ggcgacaggg
     2281 gccttgctct tcgccggctc cagcgcccgg ccatcgagcg tggtgatggg ccccgcatca
     2341 ggttccagaa ttgcggtcga gccgttcggg gggtctgtat cggtcttttt gctgtcgaga
     2401 ttgaacacct gcgacatgga agcgccggcg gcggccaggc cctctttggt gtctttcggt
     2461 ccaagaatct tcaggatcag gcccaggatc gccatagcga tgaaggccca catggcgatc
     2521 gagaagccga cagccgccac caggccgagg attcggctcg accgggtagc cgggcgtggc
     2581 tcactctcgc cttcaggtgg tttcatcgat gccccgttca cgccacctcg ccccaccgtc
     2641 tttcgtcgag cgcactctaa agtgacgcgc gctcgcggca gttcaaacta aggggccacg
     2701 tccgcgcccg ccgcgcaaga gcctgcggca gagctccgtc tgcgcacgat ttcgccgcgg
     2761 ctgccgctac ggcgccttgg gcgggacgat cgccaccagt tccacgtcga acaccagggt
     2821 cgcgtccggc gggatgcccc gcttctgcac cgcctgcgcc gcggcggtcg cgccggcggg
     2881 cggcgtgaag gcgcgtcccg gcccgtaggc caggtaggac ggcattctga ttttccaatg
     2941 atcgccgacc cgcatcagct gcaggcccgc gctcatcccg gggatcacct ccttcaccgc
     3001 gaaggtggag aggtccttgc cgtcgcccgg tgaggtcgag aacacctggc cgtcctcgaa
     3061 gcggccgatg tagcgcatgg ccacgctgtc ggcccgggtc gggtgcggcc cgcccagggg
     3121 ccccgccgcc agcacctgat a
//
LOCUS       DATAJL010000377         1731 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19594,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000377 DATAJL010000000
VERSION     DATAJL010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19594"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1015
                     /locus_tag="VHN39_07280"
     CDS             <1..1015
                     /locus_tag="VHN39_07280"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2816178.1"
                     /translation="QKRVQEVRTMVVAMLAEMNREAVDKKPAAAPLVRGVRAKVMDML
                     DVETELMAGRRVAWLRQRQRVKFVALGGAFLLLLLTGLAALVVRGDLRRREQAVRDRA
                     ALYQFQERLIGIVGHDLRNPLTAVLVSAQMLLKRKDDLHESQVQAVERIARSASRIDA
                     LGGLLVDFTQARLGGGVPLRREPSDARPAVERAMDELRSANPKRVLRLDARTANTSGN
                     WDVERLAQVVSNLVSNALRYGAKDAPVTVTLDDAQDAMVIEVHNRGEPIAAELLPHLF
                     EPYKRGAAAPTAYAAGLGLGLYIVREIALAHGGEVTVQSTAEGGTAFRAKLPRAAPRV
                     SLD"
     gene            1020..1604
                     /locus_tag="VHN39_07285"
     CDS             1020..1604
                     /locus_tag="VHN39_07285"
                     /inference="COORDINATES: protein motif:HMM:NF026155.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816179.1"
                     /translation="MRNPADPALRLPEATSGELQSLVQQALADRALLQGQHGRAVREV
                     IDRLDKGTLRVAERVQTGERWKIHGWLQQAISLYFGLVPNETYEAGDLRFFDKIPPKQ
                     ELSGFRVVPPGVVRYGAHVEAGAIVMPGYVNIGARVGAGSMVDTWATVGSCAQVGKGV
                     HLSGGVGLGGVLEPPGARPLLRPARPRPPRSGCR"
     gene            complement(1546..1731)
                     /locus_tag="VHN39_07290"
                     /pseudo
     CDS             complement(1546..1731)
                     /locus_tag="VHN39_07290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004279082.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
BASE COUNT          261 a          589 c          613 g          268 t
ORIGIN      
        1 tcaaaagcgc gtgcaggaag tgcgaacgat ggtcgtcgcc atgctggcgg agatgaaccg
       61 ggaggcggtc gacaagaagc cggccgcggc gccgctcgtc cgcggggtgc gcgccaaggt
      121 gatggacatg ttggacgtgg agaccgagct gatggctggc cggcgggtcg cctggctgcg
      181 ccagcggcag agggtcaagt tcgtcgcctt gggcggagcc ttcctgctcc tcctgctcac
      241 gggtctcgcg gcgctggtgg tgcgcggtga cttgcggcgg cgcgagcagg cggttcgcga
      301 tcgggccgcg ctctatcaat tccaggagcg gctgatcggc atcgtcgggc acgacttgcg
      361 caacccgctc acggccgtcc tggtctcggc gcagatgctg ctcaagcgca aggacgatct
      421 ccacgaaagc caggtgcagg cggtggagcg catcgcccgc agcgcttccc gcatcgatgc
      481 gctggggggt ctgctggtgg atttcaccca ggcccggctg ggcggcggcg tgccgctccg
      541 gcgtgagccg tcggatgcaa ggcctgccgt ggagcgggcc atggacgagc tgcgcagcgc
      601 caaccccaag cgcgtgctgc gtctggacgc gcgtacggcg aacacctccg gcaattggga
      661 tgtcgaacgc cttgcccagg tggtctcgaa cctggtctcc aacgcgcttc gttacggcgc
      721 gaaggacgcg cccgtcacgg taactctcga cgatgcccag gacgcgatgg tgatcgaagt
      781 ccacaaccgc ggggagccga ttgccgccga gctgctgccc cacctcttcg agccctacaa
      841 gcgtggtgcg gcagctccaa ccgcctatgc ggcgggtctg gggctgggcc tgtacatcgt
      901 gcgggagatc gccttggcgc acggcggaga agtcaccgtc cagtccaccg cggaaggcgg
      961 cacggccttt cgcgcaaagt tgccccgcgc ggcgcctcgc gtttcgctag attaggtcca
     1021 tgcgcaatcc agccgatccc gcgctgcggc ttcccgaagc gacttccggc gagctgcaga
     1081 gcctggtgca gcaggccctg gcggaccgcg cgcttctgca gggccagcac ggccgggcgg
     1141 tgcgcgaggt catcgatcgc ctcgacaaag gcacgctgcg cgtcgccgag agggttcaga
     1201 ccggcgaacg ctggaagatc cacggctggc tgcagcaggc catctcgctc tacttcggcc
     1261 tcgtccccaa cgagacctac gaggccggcg atctgcgctt cttcgacaag attcccccca
     1321 agcaggagct gagcggcttt cgcgtggtgc cgccgggcgt ggtccggtat ggcgcgcacg
     1381 tcgaggccgg ggccatcgtc atgcccggct acgtcaacat cggcgctcgg gttggcgcag
     1441 gcagcatggt cgacacctgg gccacggtcg gctcgtgcgc gcaggtcggg aagggcgtgc
     1501 acctgtcggg aggagtcggg ctgggcggcg tcttggagcc gcccggagca cggcctcttc
     1561 ttcgaccagc acgccctcga ccaccacgca gcggctgccg atgaacgccc cgtcttcgat
     1621 gatcaccggc ctcgcgccag gcggctccag cacgccgccc agtccgaccc cgccggaaag
     1681 atgcacgccc ttcccgacct gcgcgcacga gccgaccgtg gcccaggtgt c
//
LOCUS       DATAJL010000378         2554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19611,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000378 DATAJL010000000
VERSION     DATAJL010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19611"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..161
                     /locus_tag="VHN39_07295"
     CDS             <1..161
                     /locus_tag="VHN39_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S-adenosylmethionine:tRNA
                     ribosyltransferase-isomerase"
                     /protein_id="HEX2816180.1"
                     /translation="LMTNFHLPKSTLFMLVSAFAGLEAMRGAYAHAIAAAYRFYSYGD
                     ASLLWKAG"
     gene            161..1279
                     /gene="tgt"
                     /locus_tag="VHN39_07300"
     CDS             161..1279
                     /gene="tgt"
                     /locus_tag="VHN39_07300"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEX2816181.1"
                     /translation="MAAFPFSIAATDGKARVGVLATPRGDIRTPAFMPVGTAGTVKAL
                     TVDQVAQTGADILLGNTYHLMLRPTAERVARLGGLHRFMRWEKPILTDSGGFQVMSLS
                     KISKVTEEAVTFQSHIDGSKHVLTPERSIEIQADLLGADIVMQLDELVSLPTTEDRAA
                     DAMRRSARWGERSKAAFGAREAQALFGIQQGGMSEALRRESAERLTGIGFDGYAIGGL
                     AVGEGHEGMCEVLDYAPGMLPLERPRYLMGVGKPIDIVEAVARGVDMFDCVLPTRSGR
                     HGQAWTWEGSVNLKNARFADDDTPFDATSACPASRDYSKAYLHHLVKSDEILGQVLLS
                     WHNLAFFQQLMAALRSAIAEGRLEGFRRDFAGRQKPRP"
     gene            complement(1276..1866)
                     /locus_tag="VHN39_07305"
     CDS             complement(1276..1866)
                     /locus_tag="VHN39_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816182.1"
                     /translation="MRYATALLLSAMALGLSACVTEPDNGSPKVQTTAEANRSGVKGV
                     AESPLRDLNVMRTKIPEVLLQAMADPYERPGVGRCADLLTRLVPLDEALGDDLDSPSQ
                     KQEGMIDKGRTTALTVASGAASDVIPFRGWIRKLSGAERHDRYVQAAITAGAVRRGYL
                     KGLGEAKGCSPPATPSHELAGAPVLDQSMKPKFPIH"
     gene            1998..2072
                     /locus_tag="VHN39_07310"
     tRNA            1998..2072
                     /locus_tag="VHN39_07310"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2030..2032,aa:Lys,seq:ttt)
     gene            2217..>2554
                     /locus_tag="VHN39_07315"
     CDS             2217..>2554
                     /locus_tag="VHN39_07315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816183.1"
                     /translation="MIRRFLYTAAAIAALSMAGAAQAGNVFLTGHDPDFHAQDELSGV
                     HELTVALNFVTGGTYNTGAEKFLFVESNLAVTGGHRRGEDALTGALGLTAGVNFDQVN
                     AAGLATVNFN"
BASE COUNT          398 a          853 c          864 g          439 t
ORIGIN      
        1 gcttgatgac caacttccac ctgccgaagt cgacgctgtt catgctggtc tcggccttcg
       61 cgggcctgga ggccatgcgc ggcgcctacg cccacgcgat cgcggcggcc taccgattct
      121 actcctatgg cgacgccagc ctgctctgga aggccggttg atggcggcct ttcccttcag
      181 catcgccgcc accgatggca aggcgcgcgt gggcgtgctc gccacgcccc ggggcgatat
      241 ccgcacgccc gccttcatgc ccgtggggac cgccggcacc gtcaaggcgc tcaccgtcga
      301 ccaggtggct cagaccggcg ccgatatcct gctcggcaac acctaccacc tgatgctgcg
      361 gcccacggcc gagcgggtgg ccaggctcgg cggcctgcac cggttcatgc gctgggagaa
      421 gccgatcctg accgactcgg gcggcttcca ggtcatgtcg ctgtcgaaga tctccaaggt
      481 cacagaggag gcggtgacct tccagagcca tatcgacggc tcgaaacatg tcctgacccc
      541 ggaacgctcc atcgagatcc aggccgacct gctcggcgcg gacatcgtca tgcagcttga
      601 cgaactggtg tcgctgccga ccaccgaaga ccgcgcggcc gacgccatgc gccgctcggc
      661 gcgttggggg gagcgctcga aggcggcgtt cggcgcccga gaggcgcagg ccctgttcgg
      721 catccagcag ggcggcatgt cggaggccct gaggcgcgag tccgccgagc gtctgaccgg
      781 catcggcttc gacggctacg cgatcggcgg cctggcggtg ggcgaggggc atgaaggcat
      841 gtgcgaggtg ctggactatg cgcccggcat gctgcccctg gagcggccgc gctacctgat
      901 gggggtcggc aagcccatcg acatcgtcga ggcggtggcg cgtggcgtcg acatgttcga
      961 ctgcgtgctg ccgacccgct cgggccggca cggccaggcc tggacctggg agggctcggt
     1021 caatctgaag aacgcccgct tcgccgacga cgataccccc ttcgacgcca cgagcgcctg
     1081 cccggcgtcg cgagactatt ccaaggccta tctgcaccat ctggtgaagt cggatgagat
     1141 cctgggccag gtgctgctct cctggcacaa cctggccttt ttccagcagc tgatggcggc
     1201 cctgcgctcg gcgatcgccg aggggcggct ggagggcttc aggcgtgatt tcgccggtcg
     1261 acaaaaacct cggccctaat ggatcgggaa tttgggcttc atggactgat ccaacaccgg
     1321 cgcgccggcc agttcgtgag acggcgtggc gggcgggctg cagcccttgg cctcgcccag
     1381 ccccttcaga tagccgcggc gcacggcgcc agcggtgatc gcggcctgga catagcggtc
     1441 atgccgctcg gcgccggaca gcttgcggat ccagccccgg aacgggatca cgtcgctggc
     1501 cgcgccggag gcgacggtga gggcggtcgt cctgcctttg tcgatcatgc cctcctgctt
     1561 ctgggacggg gagtcgaggt cgtcgcccag cgcctcgtcc aggggcacaa ggcgcgtcaa
     1621 caaatccgca caacgcccga cgcccggccg ctcatagggg tcggccatgg cctgcagcag
     1681 cacttcgggg atcttggtcc gcatgacgtt gaggtcgcgc aggggcgatt ccgcaacgcc
     1741 cttcacgccg gatcgattgg cctcggcggt ggtctgcacc ttcggcgatc cgttgtcggg
     1801 ctcggtcacg caggcgctga ggccaagggc catggcgctc agcaagaggg cggtcgcgta
     1861 tcgcatgggc tcaaccttag tcgacatcct ggcgagttca gggcgcctgc tcttgcgccg
     1921 tcaaggtccg gcgcctaagg tccgcgccgc ttcgccaggg ccacattctt gagggaagag
     1981 tgtgagcttc gcgtcgtggg ccggtagctc agtggtagag cattcgactt ttaatcgaat
     2041 ggtcgtgagt tcgaacctca cccggcctac caattctgct tcctcctgcg cgctgtctgg
     2101 ccgggttgag gaacggggac cgccatcgac tcgcctctgg cgcgagaccc gttgacagcg
     2161 aaatatcggc gttcgttaac tattcgacct gtccaccgac ttggggagtt cggatcatga
     2221 tacggcgttt cctttacaca gcggccgcga tcgcggcgct ttcgatggct ggagcggccc
     2281 aggccggcaa cgtgttcctg accggccacg acccggactt tcacgcccag gacgagttga
     2341 gcggcgtgca cgagctcacc gtggcgctga acttcgtgac cggcggcacc tacaacaccg
     2401 gggccgagaa gttcctgttc gtcgagagca accttgccgt caccggcggg caccgtcgcg
     2461 gcgaggacgc gctcaccggc gcgctcggtc tgacggccgg agtgaacttc gaccaggtga
     2521 acgccgcagg cctggccacg gtgaatttca acga
//
LOCUS       DATAJL010000379         2030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19633,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000379 DATAJL010000000
VERSION     DATAJL010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19633"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..913
                     /gene="argJ"
                     /locus_tag="VHN39_07320"
     CDS             <1..913
                     /gene="argJ"
                     /locus_tag="VHN39_07320"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518535.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004358 - glutamate N-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HEX2816184.1"
                     /translation="RFDCRQRDVMVASTGVIGVLLDDAKIVHRLPDIEHKLTEDGWAN
                     AAKAITTTDTFPKGAHAVADIDGVKVRISGICKGSGMIAPDMATMLAFVVTDAAISPA
                     ALQNLVSLYTRNTFNAVTVDGDRSTNDTLLLFATGKSGAPKISRAGDRRLADFRDKLE
                     HVLMDLAQQLVRDGEGATKFIKITVSGAESHASARKIARTIAESPLVKTAFAGEDANW
                     GRIVMAVGRADEPVDRDTMSVKFGPLVAAQDGLVSPTYDEAKMSAYMKKPELEVSVDV
                     GMGRGSASIWTCDLTKRYVEINGDYRS"
     gene            complement(917..1651)
                     /locus_tag="VHN39_07325"
     CDS             complement(917..1651)
                     /locus_tag="VHN39_07325"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816185.1"
                     /translation="MEERFEIATPLGDIWMWGRDTGKPIALVITGAFADFEIYDRLQL
                     VLPQFDVLRTHLPGNHSPALAETSIAAMSGAISEALTSAFGGRPLVILGFSTGALVAM
                     GVAAPGLKALLLVEPFLRTAHVWPFRGMVEDHRSAEQQTFLWNVLGVRDGEAEQRDYR
                     HLARGLGVPGHVLLGGIPLMPRRPLPNLPSLVDEEDRATLRAQPLLNLTEVPGAGHNV
                     AAVNIPAFRALLGPVCRTIVPDAVLM"
     gene            1725..>2030
                     /locus_tag="VHN39_07330"
     CDS             1725..>2030
                     /locus_tag="VHN39_07330"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX2816186.1"
                     /translation="MSWLRTAAMLAGGAIALGAGLAIAQDAPPAKLLLSDRTHGRELY
                     ETRCASCHDAGADRTPRKDALIAMGPDTVVDALSRGVMRANAVGLNDADIEAVAIYLT
                     "
BASE COUNT          357 a          712 c          681 g          280 t
ORIGIN      
        1 gcgtttcgac tgccggcagc gcgacgtgat ggtggcttcc accggtgtga tcggggtgct
       61 cctggacgac gccaagatcg tccatcgcct gcccgacatc gaacacaagc tcaccgagga
      121 cggctgggcc aatgcggcca aagccatcac caccacagac accttcccca agggcgcgca
      181 cgcggtcgcc gacatcgacg gggtgaaagt caggatcagc ggcatctgca agggctccgg
      241 catgatcgcg ccggacatgg ccaccatgct ggccttcgtg gtcaccgacg cggcgatctc
      301 gcccgcggcc ctgcagaacc tggtcagcct ctatacccgc aacaccttca acgcggtcac
      361 ggtggacggc gaccgctcga ccaacgacac cctcctgctg ttcgccaccg gcaagtccgg
      421 cgccccgaag atcagtcggg ccggcgaccg ccgtctggcc gacttccgcg acaagctgga
      481 gcacgtcctg atggacctcg cccagcagct ggtccgcgac ggcgagggcg ccaccaagtt
      541 catcaagatc acggtgagcg gggcggagag ccacgcttca gcgagaaaga tcgcccggac
      601 catcgccgag agcccgctgg tcaagaccgc cttcgccggc gaagacgcca actggggccg
      661 catcgtcatg gcggtcggcc gcgccgatga gcccgtggac cgcgacacca tgagcgtgaa
      721 gttcggcccc ctggtcgccg cccaggacgg cctggtctcg cccacctacg acgaggccaa
      781 gatgagcgcc tacatgaaga agccggagct cgaggtgtcg gtggatgtcg gcatgggccg
      841 cggctcggcc tcgatctgga cctgcgacct caccaaacgc tacgtcgaga tcaacgggga
      901 ttatcgctcc tagcggtcac atcagcaccg cgtccggcac gatcgtgcgg cagaccggcc
      961 ccagcagagc gcggaaggcc gggatgttca cggcggcgac gttgtgcccg gcgccgggaa
     1021 cctcggtgag gttgagcagc ggctgagcgc gcagcgtcgc gcggtcctcc tcgtccacaa
     1081 ggctcggcag gttcggcagc ggccgccgcg gcatgagcgg tatgccgccc agcagcacgt
     1141 ggccgggaac gcctaggccg cgcgccaggt ggcgatagtc gcgttgctcg gcctccccgt
     1201 cgcggactcc gaggacattc cacaagaacg tctgctgctc agccgagcgg tggtcctcga
     1261 ccatgccgcg gaatggccag acgtgggcgg tcctgaggaa cggctccacc agcagcaacg
     1321 ccttgaggcc cggcgccgcg acgcccatcg ccaccagcgc cccggtggaa aagcctagga
     1381 tcaccagggg gcgcccgccg aaggccgagg tcagcgcctc ggagatggcg cccgacatgg
     1441 cggcgatgct ggtctcggcc agcgcggggc tgtggttccc gggcaggtgg gtcctgagca
     1501 cgtcgaactg aggcagcacg agttgcaggc ggtcgtagat ctcgaagtcc gcgaaggcgc
     1561 cggtgatgac caacgcgatc ggcttgccgg tgtcgcgccc ccacatccag atatcgccca
     1621 gcggtgtcgc gatctcgaag cgctcttcca tccgcccaac cttgacctga ccgacgccgg
     1681 tccggataca ggtcgcaaca agaaaactaa aggggaggcg cgtcatgtcc tggcttcgga
     1741 ccgcggcgat gctggcgggg ggcgcgatcg cgcttggcgc ggggttggcg atcgcccagg
     1801 acgcgccgcc ggccaaacta ttgctgagcg accgcaccca tggccgcgag ctctacgaaa
     1861 cccgctgcgc ctcctgccat gacgccggcg ccgatcggac gccgcgcaag gacgccctga
     1921 tcgccatggg ccccgacacg gtggtcgatg cgctcagccg cggggtcatg cgcgccaacg
     1981 cggtcggcct gaacgacgcc gacatcgagg ctgtcgcgat ctacctcacc
//
LOCUS       DATAJL010000380         2323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_67154,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000380 DATAJL010000000
VERSION     DATAJL010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67154"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..267)
                     /locus_tag="VHN39_07335"
     CDS             complement(<1..267)
                     /locus_tag="VHN39_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX2816187.1"
                     /translation="MRRPIRFLLDGEVRELSDIDPTLTVLNLLRYDLRRTGTKEGCAE
                     GDCGACTVVLGELEHGRVAFRAVNACTLFTPMLDGRALFTVESLK"
     gene            complement(270..611)
                     /gene="uraH"
                     /locus_tag="VHN39_07340"
     CDS             complement(270..611)
                     /gene="uraH"
                     /locus_tag="VHN39_07340"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEX2816188.1"
                     /translation="MSGLTTHVLDTASGKPAAGVALRLKRGGDVLVSTITNADGRCDS
                     PLLTGAAIAAGAYRLEFDVGAYYRAQGVTLPDPAFLETVALEFGIADAGAHYHVPLLV
                     SPFGYSTYRGS"
     gene            735..1646
                     /gene="puuE"
                     /locus_tag="VHN39_07345"
     CDS             735..1646
                     /gene="puuE"
                     /locus_tag="VHN39_07345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0000256 - allantoin catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase PuuE"
                     /protein_id="HEX2816189.1"
                     /translation="MPKDAYPRDLTGYGRSPPHADWPGGARIAVQIVLNYEEGGEMSV
                     LHGDAASESFLSDLINPAPVTGGRHMSIEQIYEYGSRAGVWRLLRLFERYGVPVTVFG
                     VAMAMERNPAVVEAFLEAGHEIASHGWRWINYQTVDERTEREHMRRAVEIHTRLTGAR
                     PLGWYTGRTSPNTRRLAAEEGGFLYDADDYSDDLPFWAPAAGRPHLIVPYTLEANDMR
                     FAGGGLVTGEDFFSYLKDAFDVLYAEGETAPKMLSVGLHCRLAGRPGKMAGLERFLKY
                     AQGHKDVWFCRRIEIARHWRARHPHAG"
     gene            1636..2124
                     /gene="uraD"
                     /locus_tag="VHN39_07350"
     CDS             1636..2124
                     /gene="uraD"
                     /locus_tag="VHN39_07350"
                     /EC_number="4.1.1.97"
                     /inference="COORDINATES: protein motif:HMM:NF020907.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0019628 - urate catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline
                     decarboxylase"
                     /protein_id="HEX2816190.1"
                     /translation="MPVSALSHPEFLARFGPVYEASPWVAEGVWPAVEAGGLDDPAAL
                     AAALRAEVDAAPQAMRLALIRAHPELAGRARMAQASVKEQSAAGLDQCSADEFAAFQR
                     LNGAYNARFGFPFIVAVKGLTRADILQAFEARLANDPETEFATAIAQIHRIAGFRLAD
                     LS"
BASE COUNT          364 a          776 c          828 g          355 t
ORIGIN      
        1 cttgaggctc tcgacggtga agagggcgcg gccgtcgagc atcggggtga agagggtgca
       61 ggcgttgacc gccctgaacg cgaccctgcc atgctccagc tcgcccagca ccacggtgca
      121 ggcgccgcaa tcgccctccg cgcagccctc cttggtcccg gtgcggcgca ggtcgtagcg
      181 cagcaggttg agcacggtca gcgtcgggtc gatgtctgac agctcgcgga cctcgccatc
      241 cagcaggaat cggatcgggc gtctcatggt cagctgccgc gataggtgga gtagccgaac
      301 gggctgacca gcaggggcac gtggtagtgc gcgccggcgt cggcgatgcc gaactcgagg
      361 gcgacggtct ccaggaaggc cgggtcgggc aaggtgacgc cctgggcgcg gtaatacgcc
      421 ccgacatcga actccaggcg ataggcgccg gccgcgatcg ccgcgccggt cagcagcggc
      481 gaatcacagc ggccgtcggc gttggtgatg gtgctgacca gaacgtcccc gccgcgcttc
      541 aggcgaaggg ccacccccgc ggcgggcttg ccgctggccg tgtccaggac gtgggtcgtc
      601 aggccgctca ttttcgttcg ggtcgcccgt ccgcaatcgc cagccgccca gagtcggtcc
      661 aagcccctcg aattgcaact ctttggcctt cttgcgaggc tgcagaccgc gctaagcctg
      721 ctatgcggtc ggacatgccg aaagacgcct atcccagaga cctgaccggc tatggccgct
      781 cgcccccgca cgccgactgg ccgggcggag cgcggatcgc ggtgcagatc gtgctgaact
      841 acgaagaggg tggggagatg agcgtcctgc acggggacgc ggcgtccgag agcttcctgt
      901 ccgacctgat caatccggcg ccggtgacgg gcggccggca catgagcatc gagcagatct
      961 acgagtacgg atcgcgcgcc ggggtctggc ggctgctcag gctcttcgag cgctacggcg
     1021 taccggtgac agtgttcggc gtggccatgg ccatggagcg caatccggcg gtggtggagg
     1081 cgttcctgga agccggccac gagatcgcgt cgcacggctg gcgctggatc aactaccaga
     1141 cggtcgatga gcggacggag cgcgaacaca tgcgccgcgc cgtggaaatc cacacccggc
     1201 tgaccggggc ccggccgctc ggctggtaca ccggccggac cagccccaac acgcgccggc
     1261 tggccgcgga ggaaggcgga tttctctacg acgccgacga ctattccgac gatctcccct
     1321 tctgggcgcc ggctgcggga cggccgcacc tgatcgtgcc ctatacgctg gaggccaacg
     1381 atatgcggtt cgccggcggc ggcctggtca ccggcgagga cttcttcagc tacctgaagg
     1441 acgccttcga cgtgctctac gccgagggcg aaaccgcgcc caagatgctg tcggtgggcc
     1501 tacactgccg gctggccggg cggccgggga agatggccgg gctcgagcgg ttcctgaagt
     1561 acgcgcaagg gcacaaggac gtctggttct gccgccgcat cgagatcgcc cggcactggc
     1621 gcgcgcggca tccccatgcc ggttagcgcg ctctcccacc ccgaattcct ggcgcggttc
     1681 gggccggtct acgaggcctc gccgtgggta gcggaaggtg tctggccggc ggtggaggcg
     1741 ggtgggctcg acgatccggc ggcgctggcg gcggccttgc gcgcggaggt ggatgcggcg
     1801 cctcaggcga tgcggctggc gctgatccgg gcccaccccg agctggccgg ccgcgcgcga
     1861 atggcgcagg cctccgtgaa ggaacagtcc gcagcgggtc tggaccagtg ctcggcggac
     1921 gagttcgcgg ccttccagcg cctgaacggc gcctacaacg cccgcttcgg ctttcccttc
     1981 atcgtcgcgg tgaaggggct gacacgggcc gatatcctgc aggctttcga ggcgcgcctg
     2041 gccaatgacc cggagaccga gttcgcgacc gccatcgccc agatccaccg catcgcgggc
     2101 ttcaggctcg cggacttgag ctagacttgg cctgacgtaa gagagaccgc tcgtgttcga
     2161 cgacctgcgc cgccgctatg tggacctggc ccagccccgg ttggggtcgc aggtggtcta
     2221 tgccaccgac gacttcttcg ccgacaagga ccgcctgatc tcgccgcagg agcctgaatt
     2281 catccccggc aagtacgacg acaacggcaa gtggatggac ggc
//
LOCUS       DATAJL010000381         6061 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19649,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000381 DATAJL010000000
VERSION     DATAJL010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6061)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6061)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6061
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19649"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VHN39_07355"
     CDS             <1..326
                     /locus_tag="VHN39_07355"
                     /inference="COORDINATES: protein motif:HMM:NF024180.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CHAT domain-containing protein"
                     /protein_id="HEX2816191.1"
                     /translation="AGSEATDLTGLQGGGEALGGLTRAVIYAGGRSLVVSHWSVDSAA
                     TVRLMTGLFSASAPSEAEALQRAQVSLQQSSDWSHPYFWAPFTIVGDGARAMPTSGAA
                     TVAKN"
     gene            430..2028
                     /locus_tag="VHN39_07360"
     CDS             430..2028
                     /locus_tag="VHN39_07360"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX2816192.1"
                     /translation="MGRHSAGEGFLRGFLKFAGVEQFYLWNVFDRPRADLDPLLERLG
                     PPPGPVSWIAAGDRGALSAPGSVHIPTPEMQGEAWARRTVGATSYSITGVTHTIAETY
                     IMGEIAGLLIAPIEPWDALVCTSPAVQNAVETQLAAVADHLHQRFGVTRMPPAQLVTI
                     PLGVHADDFTFDPAARKRWREVLDVPADAVAALYLGRFSVATKMNPAPMGLALQRAAR
                     RTGQPVYWILFGGATAPEEDQAFRDAAAAFCPDVQLRFVGEAEPDAHGPIWSAADVFL
                     SLSDNVQESFGLTVPEAMAAGLPCVVSDWDGYRSSVRHGTDGFAIRTTTPRPGLGADL
                     AFRYAHGLSGYADYFTAQSQFTAVDVEQAGEALAALFRDPELRGRMGAAASARAREIF
                     DWRVIIPQYQRLWTELARRRLAAPPQPPRSGGDNPWGLDPFAMFAAYPTRALAHNDTV
                     QLTRAYAPAELAAIMAAPSVRGTEILLPTLPQTQTLIGLLSHDRPAAVSALLARFTPA
                     ERPFVERGLVWLAKYGLVSLSSPQ"
     gene            2152..2601
                     /locus_tag="VHN39_07365"
     CDS             2152..2601
                     /locus_tag="VHN39_07365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816193.1"
                     /translation="MRRLLIGVLLAAGLAGAANASDYIVVNSTDPTVKRGLALDAGMR
                     VPVAAGKSLTVMRASGEVTTLQAGPAGVTLPGARLAANDSARFDSLKSLIDPPPQGRT
                     FGARRGGFCPPAASAVTLDDILKLADQSGCKAEAREALDAFIAKAGS"
     gene            complement(2598..3950)
                     /locus_tag="VHN39_07370"
     CDS             complement(2598..3950)
                     /locus_tag="VHN39_07370"
                     /inference="COORDINATES: protein motif:HMM:NF015355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxycarboxylate transporter family protein"
                     /protein_id="HEX2816194.1"
                     /translation="MAKAAPDKVPEPPAAVTGWWRIMDLRMGIVPVPVAVLGAAVTAA
                     FVWLGAPPSDILMNITVLSVGGFFCAEIGKRTPGLKNLGLAAILATFLPSYLVYAHVL
                     PGGLVKSITTFTDNSNFLYLFIAAIIVGSILGMDRRALIAGFVKIFVPLAVGSVVAAV
                     VGCAVGTGLGLGLRHTFFKVVAPIMAGGVGEGAIPLTIGYAQFSHQPQGELFAEVLPA
                     VMLGSLTAILFAGALNAVGKRYPHLTGEGRLQPGEVDDEPFAAPETPRVAHEGLAVSA
                     ADVGAALLMAVTLYLVGALAQKLWGWPGPVVMLALAVAMKFGRVASPRLERGAFANFQ
                     FFSTAVTYPLLFAIGVAKTPWEKLMGAFNLPTLATIVVTVTTLMGTGFVVARFVRLYP
                     IEAAIVNACHSGQGGTGDVAILTAANRMQLMPFAQIATRIGGAIMVTLTLILFAKLGG
                     "
     gene            4084..5310
                     /locus_tag="VHN39_07375"
     CDS             4084..5310
                     /locus_tag="VHN39_07375"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2816195.1"
                     /translation="MATTPPRKRPYGRYAAIGVAVLVVLFVLKGCFFPTVAPPRYITA
                     PVATGDIEQTVLASGTLQPFELVDVGSQVSGQVKSLKVALGDKVLKGQLIANIDPATQ
                     RNALLTAQATLEQQRAQRLSQEAVVAQDKLALTRQSTTYAAEASSKQDLETAETQLKS
                     AQANLAATNALIKQATVAVDNAGVNLGYTQIVAPIDGVVVAIQTKQGQTVNAVQSAPT
                     IVKLANLATMTIRAQISEADVVHVHPGQTVYFTILGEPDRRFYARLRGIEPAPDSITS
                     ATTATASPSSTAAVYYNGLFEVDNPDGVLRTSMTAQVYIVLASAKHVLTVPSAALTPA
                     GPGRYTVRILTDPKKPPTTRTVQVGINNNVSAQVLSGLKAGEKVIVGEGAAKEAAPRP
                     PGSPGGPPRGQVRIGG"
     gene            5313..>6061
                     /locus_tag="VHN39_07380"
     CDS             5313..>6061
                     /locus_tag="VHN39_07380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013477579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2816196.1"
                     /translation="MAAPLLELTNLRREYPAGDQVIAALKDVTLSIEAGEMVAIVGAS
                     GSGKSTLMNVLGCLDRPTSGSYKVAGRDTASLDPDELAELRREHFGFIFQRYHLMADL
                     TALANVEVPAIYAGQPAGARRARARDLLTRFGLADRLDHRPSQLSGGQQQRVSISRAL
                     MNGGQLILADEPTGALDSKSGAELMTVLEELNAEGHTVIIVTHDMSVAEHARRIIEIS
                     DGEIIADRLTGKAAPPPVARPQPNPGSTGLLA"
BASE COUNT          963 a         2234 c         1989 g          875 t
ORIGIN      
        1 gcgcgggctc cgaagccacc gacctcaccg gcctgcaggg cggcggcgag gccctgggcg
       61 gcctgacgcg ggcggtgatc tatgccggcg gccgctcgct cgtggtctcg cactggtcgg
      121 tggactctgc ggcgaccgtg cggctgatga ccgggctgtt ctccgcgtcc gcgcccagcg
      181 aggcagaggc cctgcagcgc gcgcaggtct ccttgcagca gagcagcgac tggtcgcacc
      241 cctatttctg ggcgcccttc accatcgtgg gcgacggcgc gcgcgccatg ccaacctccg
      301 gcgccgccac ggtcgccaag aactagcgga cagaccggca tcgccgcgcc ccccatcgcc
      361 gcggcaaggc ccgccaacgc cgcgatccat ttcgatcgcg agccctatga cgcggcgctc
      421 gccaggccca tgggtcgcca ctcggcgggc gaaggcttcc tccgtgggtt cctgaagttc
      481 gccggcgtcg agcagttcta tctttggaac gtcttcgacc ggccgcgcgc cgacctcgat
      541 ccgctgctgg agcgcctggg gccgccaccc gggccggtga gctggatcgc ggccggcgac
      601 cgcggggccc tgtcggcccc ggggtccgtg cacatcccga cgccggaaat gcagggcgag
      661 gcctgggcgc ggcgcacggt gggcgcgacg agctattcga tcaccggggt cacccacacc
      721 atcgccgaga cctacataat gggcgagatc gcaggcctgc tgatcgcgcc gatcgaacct
      781 tgggacgcgc tggtctgcac ctcgccggcc gtgcagaacg cggtggagac ccagctggcg
      841 gcggtggccg atcacctgca ccaacgcttc ggcgtgaccc gcatgccgcc ggcccagctg
      901 gtgaccattc cgctgggcgt gcacgcggac gacttcacct tcgatcccgc agcccgcaag
      961 cgctggcgcg aggtgctgga cgtgccggcc gacgcggtcg cggcgctcta tctcggccgc
     1021 ttcagcgtag ccaccaagat gaacccagcg cccatgggtc tggccctgca gcgggccgcc
     1081 cgccgcaccg gccaaccggt ctactggatc ctgttcggcg gggccacggc gcccgaggag
     1141 gaccaggcct tccgcgacgc cgcggcggcc ttctgcccgg acgtccagct gcgtttcgtg
     1201 ggcgaggccg agccggacgc ccacggcccg atctggtcgg cggccgacgt cttcctctcg
     1261 ctctcggaca atgtgcagga gagtttcggc ctgaccgtgc ccgaggccat ggcggcgggc
     1321 ctgccctgtg tcgtctccga ctgggacggc tatcgatcca gcgtgcgcca tgggaccgac
     1381 ggcttcgcca tccgcaccac gacgccccgg cctggcctgg gcgcggacct cgccttccgc
     1441 tatgcccacg gtctgagcgg ctacgccgac tatttcaccg cccagtcgca gttcacagcg
     1501 gtcgacgtcg aacaggccgg ggaagccctg gcggctctct tccgcgaccc ggagcttcgc
     1561 ggccggatgg gcgcggccgc cagcgcgcgg gcccgggaga tcttcgactg gcgggtgatc
     1621 atcccgcagt accagcgcct gtggaccgag ttggcgcgcc gccgcctggc cgcacctccg
     1681 cagccgccgc ggagcggcgg agacaatccc tggggcctcg accctttcgc gatgttcgcg
     1741 gcctacccga cccgggcgct ggcccacaac gacaccgtcc agctgacccg ggcctatgcg
     1801 cccgccgagc tggcggcgat catggccgcg ccctcggtgc gcgggaccga aatcctgctc
     1861 cctaccctgc ctcagacgca aaccctgatc gggctcctgt cgcacgaccg tccggccgcc
     1921 gtcagcgcgc tcctggcgcg tttcacgccc gccgagcggc catttgtgga gcgcggcctc
     1981 gtctggctcg ccaaatacgg cctggtgagt ttgtcgagcc cgcaataggg gccgtggcga
     2041 ttggtcttaa ccttgcattg aggccaaacg gtaccgccgc ccgtaccttt atggtacttg
     2101 aaaagaataa gcctcaccgt ttcgcgcggt ggttgcaaga gaggtttctc tatgcgtcgc
     2161 cttcttatcg gcgtcctgct cgccgccggc ctcgccggcg ctgccaacgc cagcgactat
     2221 atcgtcgtca actccaccga cccgaccgtg aagcgcggcc tggctctgga cgctggcatg
     2281 cgcgtgcccg tcgcggccgg caagtcgctc accgtgatgc gcgcctcggg cgaggtcacc
     2341 accctgcagg ccggtcccgc gggtgtgacc ctgcccggcg cccgcctggc ggccaatgac
     2401 agcgcccggt tcgacagcct caagtccctg atcgacccgc cgccgcaagg ccgcaccttc
     2461 ggcgcgcgcc ggggtggctt ctgcccgccg gccgccagcg ccgtcacgct ggacgacatc
     2521 ctgaagctgg ccgaccagag cggctgcaag gccgaggccc gcgaagcttt ggacgccttc
     2581 atcgccaagg ccggcagcta gcctccgagc ttcgcgaaga ggatcagggt caaggtcacc
     2641 atgatcgctc ccccgatgcg cgtggcgatc tgggcgaagg gcatcaactg catgcggttg
     2701 gcggcggtca ggatcgccac gtcgccggtg ccgccctggc ccgagtggca ggcgttcacg
     2761 atagcagcct cgatcggata gagcctgacg aaccgcgcga cgacgaagcc cgtgcccatc
     2821 agggtcgtga cggtcaccac gatggtggcc agggttggca ggttgaaagc ccccatcagc
     2881 ttctcccagg gcgtcttggc caccccgatg gcgaacagca gcggataggt caccgccgtc
     2941 gagaagaact ggaagttggc gaaggccccg cgctcgagcc tgggtgacgc cacccggccg
     3001 aacttcatgg ccaccgcgag cgccagcatc accaccggac caggccaccc ccatagcttc
     3061 tgggccagcg cacccaccag atagagcgtc acagccatga gcagggccgc gccgacgtcg
     3121 gcggcgctga ccgccagccc ctcatgggcg acccggggcg tctccggggc ggcgaagggc
     3181 tcgtcgtcca cctcgcccgg ttgcaggcgg ccctcgccgg tcaggtgcgg atagcgcttg
     3241 ccgacagcgt tgagcgcgcc ggcgaagagg atcgcggtca ggctgcccag catcaccgcg
     3301 ggcaggacct cggcgaagag ctccccctgc ggctggtggc tgaactgggc gtaaccgatg
     3361 gtaagcggga tcgcgccctc gcccaccccg ccggccatga tcggggccac gaccttgaag
     3421 aaggtgtggc ggaggccaag gccgaggcct gtccccaccg cacagccgac caccgcggcc
     3481 acgaccgagc ctaccgccag gggcacgaaa atcttcacga agccggcgat cagggcgcgc
     3541 cggtccatgc ccaggatcga ccccacgatg atcgcggcga tgaacagata gaggaagttg
     3601 gagttgtcgg tgaaggtcgt gatcgacttg accagcccgc ccggcaggac atgggcatag
     3661 accaggtagg atggcaggaa ggtcgccagg atcgcggcca gacccaggtt cttcaggcct
     3721 ggcgtccgct tgccgatctc cgcgcagaag aacccgccca ccgacagcac cgtgatgttc
     3781 atcaggatgt ccgacggcgg cgcgcccagc cagacgaagg cggccgtcac cgcggccccc
     3841 agcaccgcga cgggaaccgg cacgatcccc atgcgcaggt ccatgatccg ccaccagccg
     3901 gtgacggcgg cgggcggctc cgggaccttg tctggggccg ctttggccat gtgtcgcttc
     3961 ctgtctggtc tgttgcgtct ttgccgcaat ctcttggcgt tcacagctaa gctactatgt
     4021 gagcctcgat tctcgcgacg cgtcgcaatg gggcggcagc gcgatcccag gactggcccc
     4081 ctcatggcga ccacgccccc cagaaagcga ccctatggcc gctacgccgc gatcggcgtc
     4141 gccgtcctgg tggtgctctt cgtcctcaag ggctgcttct tcccgaccgt cgccccaccc
     4201 cgatacatca cagcgcccgt cgcgaccggc gacatcgaac agaccgtgct ggccagcggc
     4261 accctgcagc cgttcgagct ggtggacgtg ggctcccagg tgtcgggcca ggtgaagtcg
     4321 ctgaaagtgg cgctgggcga caaggtcctc aaaggccagt tgatcgccaa catcgacccg
     4381 gcgacccagc gcaacgcgct gctcaccgcc caggcgacgc tggagcagca gagagctcag
     4441 cggctgagcc aagaagctgt cgtggcgcag gacaagctgg ccctgacgcg ccagtccacc
     4501 acctacgctg ccgaagccag ctccaagcag gatctggaaa ccgcggagac ccagcttaag
     4561 agcgcccagg cgaacctggc ggccaccaac gcgctcatca agcaagccac cgtggcggtc
     4621 gacaacgccg gcgtgaacct cggctacacc cagatcgtcg cccccatcga tggcgttgtg
     4681 gtcgcgatcc agaccaagca gggccagaca gtcaacgccg tccagtcggc tcccaccatc
     4741 gtcaagctgg ccaatctggc gaccatgacc atccgggcgc agatctccga ggccgatgtg
     4801 gttcacgtgc atcccggcca gacggtctac ttcaccatcc tgggcgagcc cgaccggcgc
     4861 ttctacgccc gcctgcgcgg catcgagccg gcgccggatt cgatcaccag cgccacgacc
     4921 gccacggcca gcccgtcgag cacggcggcg gtctactaca atggcctctt cgaggtcgac
     4981 aatccggacg gagtgctgcg cacctccatg accgcccagg tctacatcgt gctggccagc
     5041 gccaagcatg tcctgaccgt tccctcggcc gccctgactc cggcgggtcc cgggcgctac
     5101 accgtgcgca ttctgaccga cccgaagaag cccccgacca cgcgcacggt ccaggtcggc
     5161 atcaacaaca acgtcagcgc ccaggtgctg agcggtctca aggccggcga gaaggtcatc
     5221 gtgggcgaag gcgccgccaa ggaagccgcg ccgcgtccac ccggcagccc cggcggcccg
     5281 ccccgcggac aggtccggat cggcggctag ccatggccgc gccgctcctt gagctgacca
     5341 atctgcgccg ggagtatccg gcgggcgacc aggtgatcgc cgcgctcaag gacgtgacgc
     5401 tgtccatcga ggcgggcgag atggtcgcca tcgtcggcgc ctcgggctcg ggcaagtcga
     5461 cgctgatgaa cgtgctcggg tgcctcgacc gtccgacctc ggggtcctac aaggtcgcag
     5521 gccgcgatac cgccagcctc gaccccgatg aactggccga gctgcgccgc gagcacttcg
     5581 gcttcatttt ccagcgctac cacctgatgg ccgacctgac ggcgctggcc aatgtcgagg
     5641 tgccggccat ttatgccggg cagccggccg gcgctcgccg cgccagggcc cgcgacctgc
     5701 tcacccgctt cggcctcgcc gaccggctgg accatcgccc ttcgcagctc tccggcggcc
     5761 agcagcagcg ggtttcgatc tcgcgggccc tgatgaacgg cggccagctg atcctcgccg
     5821 acgagcccac aggcgccctc gactcgaaga gcggcgcgga gctgatgacc gtcctcgaag
     5881 agcttaacgc cgagggccac acggtgatca tcgtcaccca cgacatgagc gtcgccgagc
     5941 acgccaggcg gatcatcgag atcagcgatg gcgagatcat cgccgaccgc ctgaccggca
     6001 aggccgcgcc gccgccagtg gcccggcccc agccgaaccc cggcagcacc ggcctgctgg
     6061 c
//
LOCUS       DATAJL010000382         3231 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_6866,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000382 DATAJL010000000
VERSION     DATAJL010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6866"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..886
                     /locus_tag="VHN39_07385"
     CDS             <1..886
                     /locus_tag="VHN39_07385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816197.1"
                     /translation="NGVILLSQILNFALSVDGAENNPGSDQAYITAMPTYAATAWSRK
                     LVPNAPATIQAYLKEVEAFATGDYALALQQGSLLDPARKRAIAEQYARYTGLPVAYVL
                     KADLRITGGEYEKQLQDAAGLTTGRLDTRFQGPDMDPLAKEAAYDPQAAALSSAYVSG
                     FNDYARRTLGYGEGKVFKPSVNVFRFWDNNHTPPGRGFGSPRAMLNVMPDLASAMKYN
                     PSLKVMLLGGYYDLATPYFEGWYEMHHLPMPDALQANISYHYYESGHMVYAKEASLKA
                     LHDDVASFIVKNSAHPAH"
     gene            complement(933..1280)
                     /locus_tag="VHN39_07390"
     CDS             complement(933..1280)
                     /locus_tag="VHN39_07390"
                     /inference="COORDINATES: protein motif:HMM:NF024949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2816198.1"
                     /translation="MEAQHAYSPANLDIPPAARSHLRPAPINAATTRYVQERLGRAIR
                     LRRRMMDLTLQDLAGACGVTFQQVHKYESGLCSLSASQLWAIAQALDVPVTYFYENLS
                     APDVWGVDGAQLV"
     gene            1438..2463
                     /locus_tag="VHN39_07395"
     CDS             1438..2463
                     /locus_tag="VHN39_07395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde reductase"
                     /protein_id="HEX2816199.1"
                     /translation="MSGGETVLVTGGSGYIGGWCVASLLQRGYVVRATVRDLSREAAV
                     RAALGKITDPGNRLSFYAANLTADAGWDEAVSGCDYVLHVASPLGVADPKDPNDLIVP
                     AREGAKRAVSAAIKAGVKRVVLTSSVAATSKGVGGSDWTADETTWSDPNFPRLSVYAQ
                     SKTLAERAAWELIEASDGKTTLATVNPALVLGPVTSGDFSESVQVVERLLSGRVPGLP
                     RLGFNVVDVRDVADLHIRAMTDPKAAGERFIAAANFAWMRDLATLLRDRLGEGAAKVP
                     TRKVPDFVIRMAGLFDKDLGSVTPGLGHKHDFSSAKAQQMLGWKPRPLEETILDCANS
                     LIAIGAV"
     gene            complement(2460..2849)
                     /locus_tag="VHN39_07400"
     CDS             complement(2460..2849)
                     /locus_tag="VHN39_07400"
                     /inference="COORDINATES: protein motif:HMM:NF013304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HEX2816200.1"
                     /translation="MTVADWCILGAVLLYLLTLAPIKPLGWRDFNNSAPRDPAFYAPP
                     IRARVLGAHINGIETFPFFAAAILLAEMKHGSQTVVDALAVGFLVVRLAFVGAYIVGW
                     PTTRTLLWNLGFLLNVLIFISPIAWRA"
     gene            2925..>3231
                     /locus_tag="VHN39_07405"
     CDS             2925..>3231
                     /locus_tag="VHN39_07405"
                     /inference="COORDINATES: protein motif:HMM:NF016152.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEX2816201.1"
                     /translation="MLAADPDAVLARLREVCLALPETGERISHGSPAFDVAGKMFCYF
                     WHNHHGDGLTAACVKTTGRDEQDLLIEADPELYSWLPYLGPSGWIGLCLADPGLDWTH
                     "
BASE COUNT          546 a         1141 c         1065 g          479 t
ORIGIN      
        1 caatggcgtg atcctgctct cgcagattct caacttcgcg ctcagcgtcg acggcgccga
       61 gaacaatcct ggcagcgacc aggcctacat caccgccatg ccgacctatg cggccaccgc
      121 ctggtcgcgg aagctggttc cgaacgcgcc ggccaccatc caggcctatc tgaaagaggt
      181 cgaggccttc gccaccggcg actatgccct ggccctgcag cagggctccc tgctggaccc
      241 cgccaggaag cgcgccatcg ccgagcagta cgcgcgctac accggcctgc ccgtcgccta
      301 tgtgctgaag gcggacctcc gcatcactgg cggtgagtac gagaagcaac tgcaggacgc
      361 cgcgggcttg accaccgggc gcctcgacac ccgcttccag ggcccggaca tggatccgct
      421 cgccaaggaa gccgcctacg acccgcaggc cgcggcgctc agctcagcct atgtctccgg
      481 cttcaacgac tatgcgcggc gcacgctcgg ctacggcgag ggcaaggtct tcaagcccag
      541 cgtcaacgtc ttccgcttct gggacaacaa ccacaccccg cccggccggg gtttcgggtc
      601 cccgcgcgcc atgctcaacg tcatgcccga cctggcctcg gccatgaagt acaacccgag
      661 cctgaaggtg atgctgctgg gcggctatta cgacctggcg acgccctact tcgagggttg
      721 gtacgagatg caccacctgc cgatgcccga cgccctgcag gccaatatct cgtaccacta
      781 ctacgagtcc ggccacatgg tttacgccaa ggaggcctcg ctgaaggccc tgcacgacga
      841 cgtcgcgagc ttcatcgtca agaacagcgc gcacccggcg cactgaagcg gctggctgga
      901 cggcgcgtca gtgcgccggc ctccagtctg gctcagacca gctgagcgcc atcgacgccc
      961 cagacgtcgg gggcggacag attctcgtag aagtaggtga ccggcacatc cagcgcctgg
     1021 gcgatggccc acagctgcga ggccgagagg ctgcaaaggc cgctctcgta cttgtgcacc
     1081 tgctggaagg tgacgccaca cgcgccggcc aggtcctgca gggtgagatc catcatccgc
     1141 cggcgaagac ggatggcgcg cccgagacgc tcctggacgt aacgggtggt ggccgcgttg
     1201 atcggcgcag gcctcaggtg cgacctcgcg gccggcggta tgtcgaggtt ggcgggcgag
     1261 taggcgtgct gtgcttccat ggcccaaggg ataggcgcga accggcgcca cgtgcagttg
     1321 cagcggcctg cggcgagatg cacgatggtg caagcggtgg cagggccgcc ggaaatcgcg
     1381 gtttgcaacg gcggcggtcg cccctatctt agcagtgtca acatgggggc gatcgagatg
     1441 agcggcggcg aaacagtgct ggtgactggc gggtccggct atatcggcgg gtggtgcgtg
     1501 gcgagcctct tgcagcgggg ctatgtggtg cgcgccacgg tccgcgacct ctccagggaa
     1561 gccgcggtcc gcgccgcgct gggcaagatc accgatccgg gcaatcgcct cagcttctac
     1621 gccgccaacc tcacggccga cgccggctgg gacgaggcgg tcagcggctg cgactatgtc
     1681 ctgcacgtgg cctcgccgct cggcgtcgcc gaccccaagg accccaacga cctgatcgtc
     1741 ccggcccgcg agggcgccaa gcgcgcggtc tccgcggcga tcaaggccgg cgtcaagcgc
     1801 gtggtcctga cctcctcggt ggcggcgacc agcaagggcg tcggcgggtc cgactggacc
     1861 gccgacgaga ccacctggag cgacccgaac ttcccgcgcc tcagcgtcta cgcccagtcc
     1921 aagaccctgg ccgaacgcgc cgcctgggag ctgatcgagg cctcggacgg caagaccacg
     1981 ctcgccaccg tcaatccggc cctggtgctg ggcccggtca ccagcggcga tttctccgag
     2041 tctgtacagg tggtggagcg gctgctctcc ggccgggtgc ccggcttgcc gcgcctgggc
     2101 ttcaacgtgg tcgacgtgcg cgacgtggcc gacctgcaca tccgcgccat gaccgacccc
     2161 aaggcggccg gcgaacgctt catcgccgcg gccaatttcg cctggatgcg cgacctggcg
     2221 accctgctgc gcgaccgcct gggcgagggc gcggccaagg tccccacccg caaggtccct
     2281 gacttcgtga tccgcatggc cggcctcttc gataaggacc tgggctcggt gacgcccggc
     2341 ctcggccaca agcacgactt ctcctccgcc aaggcccagc agatgctcgg ctggaaaccc
     2401 cggccgctgg aggaaaccat cctcgactgc gccaacagcc tgatcgccat cggagccgtc
     2461 taggcgcgcc aggcgatggg cgagatgaag atcaggacgt tgagcaggaa ccccaggttc
     2521 cagagcaggg tgcgcgtggt cggccagcca acgatatagg cgccgacaaa cgccaaccgt
     2581 acgacaagga agcctaccgc cagcgcgtcc acgaccgttt gcgacccgtg tttcatctcg
     2641 gccagcagga tggcggcggc gaagaagggg aaggtctcga tgccgttgat gtgcgccccc
     2701 agaacccggg cgcggatcgg cggcgcgtag aaggcggggt cacgcggcgc gctgttgttg
     2761 aagtcccgcc agcccagcgg cttgatcggc gcgagcgtca acagatagag cagcaccgcg
     2821 cccaggatgc accagtccgc gaccgtcatc agaagcctcc cgacccagtc cggattgtcg
     2881 cgtaaggcgc tcgccgccgc caccgatatc ggcgatggtc ggccatgctc gccgccgatc
     2941 ccgacgccgt actggcccgc ttgcgcgagg tctgcctggc gttgcctgag accggcgaac
     3001 ggatcagcca cggctcgccg gccttcgacg tggccggcaa gatgttctgc tacttctggc
     3061 acaaccacca cggcgacggc ctgaccgcgg cctgcgtgaa aaccaccggg cgcgacgagc
     3121 aggacctgct gatcgaggcc gaccccgagc tctattcctg gctgccctat ctcggtcctt
     3181 cgggctggat cgggctctgc ctcgccgacc ccggcctcga ttggacccac g
//
LOCUS       DATAJL010000383         2192 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_6890,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000383 DATAJL010000000
VERSION     DATAJL010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6890"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(94..963)
                     /locus_tag="VHN39_07410"
     CDS             complement(94..963)
                     /locus_tag="VHN39_07410"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2816202.1"
                     /translation="MLAELLALFAAAAPNAAPPRTVSPVTVTATPSTHIDGHPDATVN
                     SVGGTEDAAGDAVAIWPRRAYSREASGRVTLSCRVDTHGLAEWCEVVAESPQGQGFGR
                     AALEMRPTFKLKPAPGPDGQPITAMMTVNVGFKAPDFQLDSAVGILGNRLEMHPVVMV
                     DNPVWVAAANFDDLARAYPAKAGGAEGYAATHCQVEPSGHDAGALHGCQIIKETPAGK
                     GFGQAALSLMPKFRVMPAALARAPTDAPLWVDVPVRLTPPQTLAERTVKAPIWLLGVD
                     PDVAPKVFPPASL"
     gene            complement(1044..>2192)
                     /locus_tag="VHN39_07415"
     CDS             complement(1044..>2192)
                     /locus_tag="VHN39_07415"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2816203.1"
                     /translation="LLALFAAAAPAAPPSAAPPRTVSGVTVTATPSSHIADHPDATVN
                     SAGGADAAGDAVAIWPRRAYSREASGRVTLSCRVDAHGLAEWCRVIAESPAGQGFGRA
                     ALEMRPTFKLTPVQGPDGPITAMMTVNVGFKAPATEFDSDGTGAATAANTMGAAPVVS
                     GSVHGNRLQMRAVVMVDNPVWVAAANFDDLARAYPAKGGGVEGYVATHCQVVRSGHDA
                     GALQHCQLLKELPKGQGFGQAALSLMPKFRVMPAVLARAPTDAPLWVDVPVRLTPPQT
                     LAERTVKAPIWLLNVDPDEAPKVFPPEAAAKGLTTGRGIARCTVAADGTIASCVPEPG
                     EPDGLGFSEAAAKLATAMRMNLWSADGAPVEGGVVHIPIRLNLKGGAE"
BASE COUNT          293 a          797 c          800 g          302 t
ORIGIN      
        1 ccaaggcggg cggggccgag ggctatgccg cgacgcactg ccaggtcgag ccctcgggcc
       61 acgacgccgg cgccctgcac ggctgccaga tcatcaaaga gacgccggcg ggaagacttt
      121 cggcgccaca tcgggatcga cgcccagcag ccagatcggc gccttgaccg tgcgctcggc
      181 gagcgtctgc ggcggcgtga ggcggaccgg cacgtcgacc cacagcggcg cgtcggtggg
      241 cgcgcgggcc agggcggccg gcatgacgcg gaacttcggc atcaggctca gcgcggcctg
      301 gccgaagccc tttcccgccg gcgtctcctt gatgatctgg cagccgtgca gggcgccggc
      361 gtcgtggccc gagggctcga cctggcagtg cgtcgcggca tagccctcgg ccccgcccgc
      421 cttggccgga taggcccgcg ccagatcgtc aaaattggcc gccgcgaccc acaccggatt
      481 gtccaccatg accaccggat gcatctcgag ccggttgccg agtatgccta ccgcggagtc
      541 cagttggaaa tccggcgcct tgaagcccac attgaccgtc atcatcgccg taatcggctg
      601 gccgtccggg ccgggcgccg gcttcagctt gaaggtgggc cgcatctcca gcgcggcgcg
      661 gccgaacccc tggccctgcg gcgactcggc gacgacctcg caccattccg ccaggccgtg
      721 ggtgtcgacc cggcacgaca gcgtcacgcg cccgctcgcc tcacgactgt aggcgcggcg
      781 cggccagatc gcgacggcgt cgccggcggc gtcttcggtc cccccgacgg agttgacggt
      841 ggcgtcgggg tggccatcga tgtgggtcga gggcgtcgcc gtgaccgtca ctggtgagac
      901 ggtcctgggc ggcgcggcgt ttggcgccgc cgccgcgaac agggccagga gttctgcaag
      961 catgccggtc accccgcata gccgtcacgt gtcaggcgag cctaccatcg cgccgcggcg
     1021 accgttagcg cggcccctgg gggttactcg gcgccgccct tgaggttgag ccggatcggg
     1081 atgtgcacga cgccgccttc gaccggcgcg ccatcggccg accagaggtt catccgcatg
     1141 gccgtcgcca gcttggcggc ggcttcggag aagccgaggc cgtcgggctc gccgggctct
     1201 gggacgcacg acgcgatggt gccgtccgcg gcgaccgtgc agcgggcgat cccgcggccg
     1261 gtggtcaggc ccttggcggc ggcctccggc gggaagacct tcggggcctc gtccggatcg
     1321 acgttcagca gccagatcgg cgccttgacc gtgcgctcgg cgagcgtctg cggcggcgtg
     1381 aggcgaaccg gcacgtcgac ccacagcggc gcatcggtgg gcgcgcgggc caggacggcg
     1441 ggcatgaccc ggaacttcgg catcaggctg agcgccgcct gcccgaaacc ctggcccttg
     1501 ggcagctcct tgaggagctg gcagtgttgc agcgcgccgg cgtcgtggcc cgagcgcacg
     1561 acctggcagt gcgtggcgac atagccctcg accccgccgc ccttggccgg ataggcccgc
     1621 gccagatcgt caaaattggc tgccgcgacc cacacgggat tgtccaccat caccacggcg
     1681 cgcatctgca gccggttgcc atggacagac ccgctgacca cgggcgctgc gcccatggtg
     1741 ttcgcggcag tggccgcgcc cgttccgtcc gagtcgaact ctgtggccgg cgccttgaag
     1801 cccacgttga ccgtcatcat cgccgtgatc ggcccgtccg gcccctgcac cggcgtcagt
     1861 ttgaaggtgg gccgcatctc cagcgcggcg cggccgaacc cctggcccgc cggcgactcg
     1921 gcgatgaccc tgcaccactc cgccaggccg tgggcgtcga cccggcacga cagcgtcacg
     1981 cgcccgctcg cctcacgact gtaggcgcgg cgcggccaga tcgcgacggc gtcgcccgcg
     2041 gcgtcggcgc ccccggccga gttgacggtg gcgtcggggt gatcggcgat atggctcgag
     2101 ggtgtcgcgg tgaccgtcac acccgagacg gtcctgggcg gcgcggcgct tggcggggcc
     2161 gccggggccg ccgcggcgaa cagggccagg ag
//
LOCUS       DATAJL010000384         2290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19707,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000384 DATAJL010000000
VERSION     DATAJL010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19707"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VHN39_07420"
     CDS             complement(<1..358)
                     /locus_tag="VHN39_07420"
                     /EC_number="1.13.12.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016703 - oxidoreductase activity, acting
                     on single donors with incorporation of molecular oxygen,
                     incorporation of one atom of oxygen (internal
                     monooxygenases or internal mixed function oxidases)
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEX2816204.1"
                     /translation="MALRTRFTEMFGIEHPVVQGGMQWVGRAELVAAVANAGGLGFIT
                     ALTQPTPEKLTEEIARCRSLTDKPFGVNLTILPAIKPPPYAEYRQAIIEAGIKIVETA
                     GNKPIEHVEEFKKHAIK"
     gene            complement(427..1389)
                     /locus_tag="VHN39_07425"
     CDS             complement(427..1389)
                     /locus_tag="VHN39_07425"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEX2816205.1"
                     /translation="MAVHYLEFERPIADLENKIEELSKLSETANPGAFDAEIEALRAR
                     TQEMRRETYAKLDAWQKTLVARHPDRPHFVDYAAGLIDEFVELRGDRKFADDQAIMGG
                     LGRFRGRPVVVMGTEKGRETITRVKHNFGSARPEGYRKAIRLMDMAERFHLPIISIVD
                     TGGAYPGMASEERGVAEAIARSTEKSLLLGVPMVAVITGEGASGGASAIASGNRVLIL
                     EHSIYMVISPEGANSILWRGARTPAEAAKAMKITAQDLLAMKIVDRIIPEPPGGAHSD
                     PEATLKAVGDAVEEELKALEGLSPEELRKQRAERFYAIGRAGLQ"
     gene            1581..>2290
                     /locus_tag="VHN39_07430"
     CDS             1581..>2290
                     /locus_tag="VHN39_07430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816206.1"
                     /translation="MNAPLKIGMASALALATALPAFAQPAPQYTPNQYDRDSQSQQQP
                     APQYQQTQPSQAAQQQYQDDRAGYEARKDAYDARKETYDSRRGDYEANRAGYQAARTD
                     YDRRHAEWERARADYDARYGRDAYIRVYGPAPIWDDARWGPYGAPAAPYYGRPTTYNG
                     PVTCRNDHTSATAGGILGALAGAALGSNIAARGHRGDGAVLGGIVGLGVGASVGASND
                     RYRCDPRGPYYSYDDTIA"
BASE COUNT          341 a          793 c          777 g          379 t
ORIGIN      
        1 ccttgatcgc gtgcttcttg aattcctcga cgtgctcgat gggtttgtta cccgcggtct
       61 cgacgatctt gatcccggct tcgatgatgg cttggcggta ttcggcgtac ggcggcggct
      121 tgatcgccgg caggatggtc aggttcacgc cgaacggctt gtcggtgagc gaccggcagc
      181 gcgcgatctc ctcggtgagc ttctcgggcg tcggctgggt gagcgcggtg atgaagccga
      241 ggccgccggc gttggcgacc gcggccacca gttcggcgcg gccgacccac tgcatgccgc
      301 cctgaacgac gggatgctcg atcccgaaca tctccgtaaa ccgggtcctg agcgccatga
      361 cttccctcca aacgattgtt tggatgacac tgaacccgcg aaccttaggt caggcaagag
      421 gcagggctac tgcaaccccg cgcggccgat ggcgtagaag cgttcggcgc gctgcttgcg
      481 cagctcttcg gggctgaggc cctcgagcgc cttcagttct tcttccaccg cgtcgccgac
      541 cgccttcagg gtcgcctcag gatcggaatg ggctccgcca ggcggttcgg ggatgatgcg
      601 gtcgacgatc ttcatcgcca ggaggtcttg ggcggtgatc ttcatggcct tggccgcctc
      661 ggccggggtg cgcgccccgc gccacaggat cgagttcgcg ccctccggcg agatcaccat
      721 gtagatggag tgttccagga tcaggacgcg gttgccgctg gcgatggcgc tggcgccgcc
      781 ggacgcgcct tccccggtga tcaccgcgac catcggcacg cccagcagga ggctcttctc
      841 ggtggagcgc gcgatggcct cggcgacgcc gcgttcctcg gacgccatgc cgggataggc
      901 gccgcccgtg tccacgatgc tgatgatcgg caggtgaaag cgctcggcca tatccatgag
      961 gcggatcgcc tttcggtagc cctcgggccg cgcagagccg aagttgtgct tcacgcgggt
     1021 gatggtctcg cggccctttt cggtgcccat gaccaccacg ggccgtccgc ggaagcggcc
     1081 taggcctccc atgatcgcct ggtcgtcggc gaatttgcgg tcgccgcgca gttcgacgaa
     1141 ctcgtcgatc agtccggcgg catagtcgac gaagtgcggc cggtcagggt ggcgcgcgac
     1201 cagcgtcttc tgccaggcgt caagcttggc gtaggtctcg cgccgcattt cctgggtgcg
     1261 ggcccgcagc gcctcgatct cggcgtcgaa ggcgccgggg ttggcggttt ccgacagctt
     1321 ggacagctcc tcgatcttgt tttcgaggtc ggcgatgggc cgctcgaatt cgaggtaatg
     1381 cacagccatc cgggggtctc ggtcctgttt cgaagcgggg cggaaattag gcgggatggg
     1441 tccgcctcac aagagcgcga ggggctggca gccggttccc gatgcaaccc ccgccaccgg
     1501 tcgggtgttg tggggccgaa gatgcgtgga cctggagagg gaacctgagc ctgcgcgtcc
     1561 gaggagaaac ggagacttcc atgaacgccc ccctgaagat cggcatggct tcggccctgg
     1621 cgctggcgac cgcattgccc gccttcgccc agcccgcgcc gcagtacaca cccaaccagt
     1681 acgaccggga ctcgcagtcc cagcagcagc cggcgccgca gtatcagcag acccagccgt
     1741 cgcaggcggc ccagcagcag tatcaggacg accgcgccgg ctacgaggcc cgcaaggacg
     1801 cctatgacgc ccgcaaggag acctacgact cccgccgcgg cgactacgag gccaaccgcg
     1861 ccggctacca ggccgcccgc accgactatg accgccgcca tgcggagtgg gagcgcgcgc
     1921 gcgccgacta cgacgcccgc tacggccgcg acgcctatat ccgcgtctat ggcccggccc
     1981 cgatctggga cgacgcccgc tggggcccct atggcgcgcc ggcggctccc tattacggcc
     2041 gcccgacgac ctacaacggc ccggtgacct gccgtaacga ccacacctcg gcgaccgccg
     2101 gcggcatcct gggggcgctg gccggcgcgg ccctgggctc caacatcgcc gcccgcggcc
     2161 accgtggcga cggtgcggtg ctgggcggca tcgtcggcct gggcgtcggc gcctcggtgg
     2221 gcgcctccaa cgaccgctat cgctgcgatc cccgcggccc ctactacagc tacgacgaca
     2281 ccatcgccta
//
LOCUS       DATAJL010000385         1702 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106104,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000385 DATAJL010000000
VERSION     DATAJL010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1702
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106104"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..556)
                     /locus_tag="VHN39_07435"
     CDS             complement(<1..556)
                     /locus_tag="VHN39_07435"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HEX2816207.1"
                     /translation="MKGGPLALTLGDPAGIGPEIVVKAWNELRRSGPPFLVVGDYQSL
                     ASASAGGASILKQIVVPSDALEAFPDALPVLDLPLRSPVVSGQPSGAAAPSIIQWIET
                     AAGLALSGAVAGVVTAPIAKAPLYEAGFKFPGHTEFLGELTASEGFEGARGPVMMLVA
                     GDLRVALVTVHEPLAKVSGLLSVEA"
     gene            complement(591..>1702)
                     /locus_tag="VHN39_07440"
     CDS             complement(591..>1702)
                     /locus_tag="VHN39_07440"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX2816208.1"
                     /translation="TTGVQPTQDTLPEFQQQALVTLVDERLQLQELRRVEKDQKFPII
                     ATDEDVQEELGGMAQQNNLKIDGFLAALKSQGIEPGTLYQQIRAQMSWQKWIRGRYGS
                     RLRIGEDQIKATQVRMIAAASKPQYDISEVFLDANRTGGMDAAMKGATQLVSQMQQGA
                     PFAAVARQFSASSTAAAGGDAGWVSPGELPTEVDAVLDQLRPGQLSKPIPVKDGVYII
                     YLKDKRSGAGQTLVSMKQLAVALPATASPADVDAARTKLEAARALVKGCDTVEAAATK
                     TPGVIAGDLGEAETADLLPEFADAAKSLQPGQLSGAIRTKVGLHVLAVCGKRAAGAAQ
                     IDHDQIENRLTGQQLSMIARRYMRDLHNSATIEFR"
BASE COUNT          234 a          559 c          630 g          279 t
ORIGIN      
        1 tggcctcgac gctgagcagg ccggacacct tggccagggg ctcgtggacg gtgaccaggg
       61 ccacgcgcag gtcgccggcg accagcatca tcaccgggcc gcgggcgccc tcgaaaccct
      121 ccgaggcggt gagttcgccg aggaattcgg tgtggcccgg aaacttgaag cccgcctcat
      181 agagcggcgc cttggcgatc ggggcggtga ccacgccggc gaccgcgccc gacagcgcca
      241 ggcccgcagc cgtctcgatc cactggatga tcgaaggcgc cgcggcgccc gacggttgac
      301 ctgagacgac cgggctgcgg agcggcaggt cgaggacggg cagggcgtcg gggaaggcct
      361 cgagggcgtc cgaggggacg acgatctgct tgaggatgga ggcgccgccg gccgaggcgg
      421 aagccaggga ctggtagtct ccgaccacca ggaacggcgg cccgctgcgg cgcagctcgt
      481 tccaggcctt gacgacgatc tccggtccga tgccggccgg gtcgccgagg gtcagggcga
      541 gcgggccacc tttcaccggg gcggcgcccc cgtaacttga gctctagggg tcacctgaac
      601 tcgatggtcg cggaattgtg gagatcgcgc atgtagcgcc gcgcgatcat gctgagctgc
      661 tggccggtaa gccggttctc gatctggtcg tggtcgatct gcgccgcgcc ggccgcgcgt
      721 ttgccgcaga cggcgagcac atggaggccg accttggtgc ggatcgcgcc ggaaagctgg
      781 cccggctgca gggacttggc ggcgtcggcg aactccggca gcaggtcggc ggtttcggcc
      841 tcgccaaggt cgccggcgat cacgcctggg gtcttggtcg ccgcggcctc gacggtgtcg
      901 cagcccttga ccagcgcgcg agccgcttcg agcttggtcc tggctgcgtc gacgtcggcc
      961 gggctggcgg ttgcgggcag ggcgacggcg agctgcttca tgctcaccag ggtctgacca
     1021 gcgccggagc gcttgtcctt caggtagatg atgtagacgc cgtccttcac cgggatcggc
     1081 ttggagagct gaccggggcg cagctggtcg agcacggcgt cgacctcggt cggcaattcg
     1141 cccgggctca cccatccggc gtcgccgccg gccgctgcgg tcgacgaggc ggagaactga
     1201 cgggccaccg ccgcgaaggg tgcgccctgc tgcatctggc tgacgagctg ggtcgcgccc
     1261 ttcatggccg cgtccatgcc gccggtgcgg ttggcgtcga ggaagacttc ggagatgtcg
     1321 tactgcggct tcgaggccgc ggcgatcatc cgcacctggg tcgccttgat ctggtcctcg
     1381 ccgatccgca ggcgcgagcc gtagcggccg cggatccatt tctgccagct catctgcgcg
     1441 cggatctgct ggtagagggt ccccggctcg atcccctggg acttcagggc ggcgaggaaa
     1501 ccgtcgatct tcaggttgtt ctgctgcgcc atgccgccca gctcttcctg gacatcctcg
     1561 tcggtggcga tgatcgggaa cttctgatcc ttctcgacgc gcctcagctc ctgcagctgc
     1621 agccgttcgt cgaccagagt gaccagggcc tgctgctgaa actccggcag ggtgtcctgg
     1681 gtcggctgga cgccggtggt gg
//
LOCUS       DATAJL010000386         1865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_118876,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000386 DATAJL010000000
VERSION     DATAJL010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118876"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1578)
                     /gene="lptD"
                     /locus_tag="VHN39_07445"
     CDS             complement(<1..1578)
                     /gene="lptD"
                     /locus_tag="VHN39_07445"
                     /inference="COORDINATES: protein motif:HMM:NF016348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0010033 - response to organic substance
                     [Evidence IEA];
                     GO_process: GO:0061024 - membrane organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HEX2816209.1"
                     /translation="MNPRPRTQPAAAQTYAVKRALLAGAAMALLWPALAHAQATAPAS
                     SFEQSPLGREQRGQILNDTGLSKTGPPKSSRPVNTDGLKPGELYMEADQLVRDDKNGL
                     TTAEGNVEIRYEDRTLRADRLVYKEAPPPPEGQPRVRDRDAPAQGVIRAFGHVQVIHD
                     DGTVEYANQMTLDDKMQAAVAIGFSARMKDKHTNQNVLIAGDSAVRRSEDIQELNKAI
                     YTPCPICVGDTPKDPTWSITADRVVEDNVHHLIYYRHARIRILGLPIMYFPVFWHADP
                     SADRQSGLLAPKIGESSRRGFSYEQPYLWVFSPSADLRISPQISTKANPFVNLWYREA
                     FNSGVLDVRAGYTHEADLDPKGNRFGDDTNRSYILARGSFKIDDAWVAGFTAERTSDP
                     LLFDKYDIGRVYEARGPYLADDHRLISQAYAIRQDNQSYFSVAAFSVQGLRPGDNNRT
                     FPVVAPIVDGRYEDPDDILGGRLRLTASAVSLTRDQSPDDQAAKLPGLDSQRVSGGLD
                     WRRIYTSDAGLRVEPFVN"
     gene            complement(1644..>1865)
                     /locus_tag="VHN39_07450"
     CDS             complement(1644..>1865)
                     /locus_tag="VHN39_07450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEX2816210.1"
                     /translation="VLAAAFSLRLVRLGGLAGLVGAGVALGFVVFFFNQFSGALGKAD
                     IIPLFAAAWAPVVVALLSGLTVLCYTEDG"
BASE COUNT          284 a          580 c          693 g          308 t
ORIGIN      
        1 gttcacgaag ggctcgaccc tgaggcccgc gtccgaggtg tagatgcgac gccagtcgag
       61 gccgccgctc acgcgctggc tgtccaggcc cggcagcttg gccgcctggt cgtccggcga
      121 ctgatcgcgg gtcagcgaga cagcgctggc ggtcaggcgc aggcgcccgc ccaggatgtc
      181 gtcggggtcc tcgtagcggc cgtcgacgat cggggcgacc acggggaaag tgcggttgtt
      241 gtcgccgggc cgcaggccct ggacgctgaa ggcagcgacc gagaaatagg actgattgtc
      301 ctggcggatc gcgtaggcct ggctgatcag gcggtgatcg tcggccaggt aggggccgcg
      361 ggcctcataa acccggccga tgtcgtactt gtcgaagagc agcgggtcgg aggtgcgctc
      421 ggcggtgaag cccgccaccc aggcgtcgtc gatcttgaag gagccgcggg ccaggatgta
      481 gctgcggttg gtgtcgtcgc cgaagcggtt gcctttggga tcgaggtccg cctcatgggt
      541 gtagcccgcg cgcacgtcga ggacgcccga gttgaaggcc tcccggtacc agaggttcac
      601 gaacggattg gccttggtgc tgatctgcgg gctgatccgc aggtcagcgg aggggctgaa
      661 cacccacaga tagggctgct cgtaggagaa gccgcgccgg ctggactcgc cgatcttggg
      721 cgccagcagg cccgactggc ggtccgccga cgggtcggcg tgccagaaca ccgggaagta
      781 catgatcggc aggcccagga tgcggatccg ggcgtggcgg taatagatca ggtggtggac
      841 gttgtcctcg accacacggt cggcggtgat cgaccaggta gggtccttgg gggtatcgcc
      901 gacgcagatc gggcagggcg tgtagatcgc cttgttcagc tcctggatgt cctcggagcg
      961 gcgcacggcg ctgtcgccgg cgatgaggac attctgattg gtgtgcttgt ccttcatgcg
     1021 ggccgagaaa ccgatggcga cggcggcctg catcttgtcg tccagcgtca tctggttggc
     1081 gtattcgacg gtgccgtcgt cgtggatcac ctggacgtgg ccgaaggcgc ggatcacgcc
     1141 ctgggccggc gcatcgcggt cgcggacccg gggctggccc tccggcgggg gcggcgcctc
     1201 cttgtagacc agccggtcgg cccgcagcgt gcggtcctca tagcggatct cgacgttgcc
     1261 ctcagctgtg gtgagaccgt tcttgtcgtc gcggacgagc tggtcggcct ccatgtagag
     1321 ttcgccgggc ttcaagccgt cggtgttcac cggccttgag gacttgggag gtccggtctt
     1381 ggacaggccg gtgtcgttga gtatctggcc acgctgttcg cggcccagcg ggctctgctc
     1441 gaaggaactg gccggggcgg tggcctgggc gtgggccagg gccggccaca gcagcgccat
     1501 cgccgcgccg gccagcagcg cacgcttcac cgcataggtc tgggcggctg cgggctgcgt
     1561 gcgaggccgc ggattcatct tcagacttcc gatccttgtc gcgacgcgcc gttacgccct
     1621 gcatagccgg gcatgcggag gattcaaccg tcttcggtgt agcagagcac ggtcaggcca
     1681 gacagcagcg ccaccacgac cggcgcccag gccgcagcga acagcgggat gatgtcggct
     1741 ttcccgagcg cgcccgagaa ctggttgaag aagaagacca cgaatccgag ggcgacgccg
     1801 gcgcccacca gccccgccag gcccccgagg cggaccagcc tgagcgaaaa ggccgccgcc
     1861 agcac
//
LOCUS       DATAJL010000387         1903 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_32794,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000387 DATAJL010000000
VERSION     DATAJL010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1903)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1903)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1903
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_32794"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..589)
                     /locus_tag="VHN39_07455"
     CDS             complement(<1..589)
                     /locus_tag="VHN39_07455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX2816211.1"
                     /translation="MRAVVRRNKQLVCDEIEELEPAEGQVLVKTLACGICGSDLHALH
                     HMEHMIELGRRGGGGDNGFDPGADTVFGHEFCAEILDHGPGSAKALKAGTRVVSVPVT
                     LTQSGMEALGFSNRLPGGFAERMVLSEAIILAVPNGLATEHAALTEPFAVGFHAVAKA
                     RMDANSVALVIGCGPVGLAVIAALKAAGHGPVIAAD"
     gene            695..1639
                     /gene="fabD"
                     /locus_tag="VHN39_07460"
     CDS             695..1639
                     /gene="fabD"
                     /locus_tag="VHN39_07460"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEX2816212.1"
                     /translation="MSLAFLFPGQGSQAVGMGSDLADAFGAAREVYQEIDDALGQKLA
                     RLMRDGPENQLTLTENAQPALMAVSLAVMRTLEKEFGVSIDKAAFVAGHSLGEYSALA
                     AAGAISLADTARLLKLRGQAMQRAVPVGEGAMASLIGPKSDVALAEEAAAAGSAVGVC
                     VVANDNNAGNVVISGDKAAVDVAIEKAKELGARAILLNVSAPFHCPLMQPAADEMASA
                     LAKATILAPLAPLVANVTALPTLDPEAIRRMLVEQVTGRVRWRESMIWLAGEGGVTRF
                     AEAGAGKVLSGMAKRIAPDAEATPLNSPADLEAFASSL"
     gene            1651..>1903
                     /locus_tag="VHN39_07465"
     CDS             1651..>1903
                     /locus_tag="VHN39_07465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2816213.1"
                     /translation="MFDLTGKTALVTGATGGIGAAIARAMHAQGAHVVLSGTREAVLQ
                     DLATELGARTSAVPANLSDPQAVDGLIEAAEAAAGAPIDI"
BASE COUNT          296 a          667 c          661 g          279 t
ORIGIN      
        1 agtcggcggc gatcaccggg ccatgtcccg cggccttcag tgccgcgatc accgccaggc
       61 cgacggggcc gcagccgatc accagggcga cggaattggc gtccattcgc gccttggcca
      121 ctgcgtggaa gccgacggcg aagggttcgg tcagggcggc gtgttcggtg gcgaggccat
      181 tggggaccgc caggataatg gcctcgctca ggaccatccg ctcggcgaat cctcccggta
      241 gccggttgga gaagccgaga gcctccatgc cgctctgcgt gagggtgacc ggcacgctga
      301 ccacgcgggt cccggccttc agcgccttgg ccgaacccgg gccatggtcg agaatctccg
      361 cgcagaactc atggccgaag acggtgtcgg cgccgggatc gaagccgttg tcgcccccgc
      421 cgccgcgccg gccgagttcg atcatgtgct ccatgtgatg cagggcatgg aggtctgagc
      481 cgcagatccc gcaggccagc gtcttgacca gcacctggcc ttccgccggc tccagctcct
      541 cgatctcgtc gcagaccagc tgcttgttac gccgaaccac cgcacgcatg gtcgtctccc
      601 gatcccgtcg cgccttgccg cgccctggct aattccgtaa ccctcgccgc tcggaatcga
      661 tagagcccgg agccaacccc atgagaggtt tcacatgagc ctcgcctttc tttttcccgg
      721 tcagggcagc caggccgtgg gcatggggtc agacctggcc gacgccttcg gggcggcgcg
      781 cgaggtatat caggagatcg acgatgcgct gggccagaag ctcgccaggc tgatgcgcga
      841 cgggccggag aatcagctga cgctgaccga gaacgctcag ccagcgctga tggcggtcag
      901 cctggcggtg atgcgcaccc tcgaaaagga attcggcgtc agcatcgaca aggccgcctt
      961 cgtggccggc cacagccttg gcgaatactc cgccctggcc gcggcgggcg ccatcagcct
     1021 ggccgacacc gcccgcctcc tgaagctgcg tggccaggcc atgcagcgcg ccgtcccggt
     1081 gggcgaaggc gccatggcct cgctgatcgg gccgaagagc gacgtggcgc tggcggagga
     1141 ggccgcggcg gccggctcgg cggtcggcgt ctgcgtggtc gccaacgaca acaacgccgg
     1201 caatgtggtg atctccggcg acaaggccgc ggtggacgtg gcgatcgaga aggccaagga
     1261 gctgggcgcg cgggccatcc tgctgaacgt ctccgcgcca ttccattgcc cgctgatgca
     1321 gcccgccgcc gatgaaatgg ccagcgcgct cgccaaggcg acgatcctgg cgccgctcgc
     1381 gccgctggtg gccaatgtga cggccctacc gaccctggac cccgaggcga tccgccggat
     1441 gctggtggag caggtcaccg gccgggtgcg ctggcgcgag agcatgatct ggctggccgg
     1501 cgagggcggc gtgacccgtt tcgcggaggc cggcgccggc aaagtcctgt cgggcatggc
     1561 caagcgcatc gccccggacg ccgaggcgac gccgctcaat tctccggccg acctcgaagc
     1621 cttcgccagc agcctctagg agcgcgccac atgtttgacc ttaccggcaa gacggctctg
     1681 gtaaccgggg ccaccggcgg catcggcgcc gcgatcgcac gagcgatgca cgcgcagggc
     1741 gcccacgttg tgctgtccgg cacccgcgag gccgtgctgc aggatctcgc cacggagctc
     1801 ggcgcgcgaa cctcggcggt cccggccaat ctctccgacc cgcaggcggt ggacggctta
     1861 atcgaggccg cggaagccgc tgcgggcgcg cctatcgaca tcc
//
LOCUS       DATAJL010000388         3321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57395,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000388 DATAJL010000000
VERSION     DATAJL010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3321
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57395"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /gene="eno"
                     /locus_tag="VHN39_07470"
     CDS             <1..217
                     /gene="eno"
                     /locus_tag="VHN39_07470"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517168.1"
                     /note="catalyzes the formation of phosphoenolpyruvate from
                     2-phospho-D-glycerate in glycolysis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEX2816214.1"
                     /translation="RNAYTAVMSHRSGETEDSTIADLAVATNCGQIKTGSLSRSDRMA
                     KYNQLLRIEEELGDQAVYAGRAAIKHG"
     gene            complement(226..1473)
                     /locus_tag="VHN39_07475"
     CDS             complement(226..1473)
                     /locus_tag="VHN39_07475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816215.1"
                     /translation="MLTIILIWLGWAAIMMAYQAFAPARLPLLRPDHATGFSADETGA
                     DSLRGRPYLARTGALGSHVAWDSQYYLSIALHGYDDPSMPVISPASAPTDPKRGLRSE
                     QPTWTSINYAFFPAYPMAMRALAAPLGLFGLAPITAASLAGVIISLAGALGAVLAIAD
                     LTAASEPNERVRAGFYLLIWPGAAFLAQVYTEGLFIGLSFGALAMLRRRRWVWAAALA
                     ALGVWTRANGALLLIPFVWTWLADGGLRRLRSREGRGAAATALALAAVPALAYLAWRL
                     SLGGRFEFVEAHYFGRGMLAIGSSLQSARDVADLVADGNPQAVAYYLAEALSILAALV
                     CSAVLWRRDKALTLYGLAILGVALTSGAELGFPRYALTVPALFLVPARWGRSIAFDRA
                     WSLANILGLGIWSLAFASGFWDG"
     gene            1626..1982
                     /locus_tag="VHN39_07480"
     CDS             1626..1982
                     /locus_tag="VHN39_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEX2816216.1"
                     /translation="MLARLRPFLPTAVLLLLIVYFALNAFSGDRGLLTSNQRDETLIA
                     KTHELAQVRAQRQDLEMRARLLRDTSLSADLLEERARSLLGFAEPRDYVVGMKPEALL
                     RVLEDLAIDHGETHGA"
     gene            1972..3051
                     /gene="pdhA"
                     /locus_tag="VHN39_07485"
     CDS             1972..3051
                     /gene="pdhA"
                     /locus_tag="VHN39_07485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045250 - cytosolic pyruvate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HEX2816217.1"
                     /translation="MAREQTGAAGQRKANGAAVTRSSKEKGATKGEAGAKDELLKYYR
                     DMLLIRRFEERAGQLYGMGLIGGFCHLYIGQEAIAVGVQAAQRPGDQVITGYREHGHM
                     LACGMDPREVMAELTGRASGSSHGKGGSMHMFSTKAAFYGGHGIVGAQVSLGTGLALA
                     NRYRGDGKVAFTYFGDGAANQGQVYESFNMAELWSLPVVYVIENNQYAMGTSIERSSA
                     ETRLFMRGASFKIPGEEVDGMDVLAVKAAAAKAAEHARSGKGPYILEMKTYRYRGHSM
                     SDPAKYRTRDEVDEVRKTRDPIDHIEEMLEKKGYADEAALKAIDAEVKRIVADAAEFA
                     RTSPEPDPSELYTDVYTEASSGVTA"
     gene            3048..>3321
                     /locus_tag="VHN39_07490"
     CDS             3048..>3321
                     /locus_tag="VHN39_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX2816218.1"
                     /translation="MTDVLMPALSPTMEEGTLAKWHVKVGDTVKSGDVIAEIETDKAT
                     MEVEAVDEGVVEAILVPEGSEEVKVNTPIARLSGEGGAAPPARVHQE"
BASE COUNT          617 a         1129 c         1122 g          453 t
ORIGIN      
        1 tcgcaacgcc tacaccgccg tgatgagcca ccgctccggc gagaccgagg actcgaccat
       61 cgccgacctc gccgtcgcca ccaactgcgg acagatcaag accggctcgc tctcccgctc
      121 agaccggatg gcgaagtaca accagctcct gcgcatcgag gaggaactgg gcgaccaggc
      181 ggtctacgcg ggccgggctg cgatcaagca cggctgagcc ggcgtctagc cgtcccagaa
      241 gcctgacgcg aaggcgaggc tccagattcc tagtcccagg atgttggcca ggctccaggc
      301 gcggtcgaac gcgatgctgc ggccccatcg cgccggaacc aggaacaggg ccgggacggt
      361 cagggcatag cgcgggaaac cgagctccgc gccgctggtc agggccaccc ccaggatcgc
      421 caggccgtag agcgtcagag ccttgtcccg acgccagaga acggccgagc agaccagcgc
      481 cgcgaggatc gatagggcct ccgcgagata gtaggcgaca gcctgcgggt tcccgtccgc
      541 caccagatcg gcgacatcgc gggcggactg gagactcgat ccgatcgcca gcatgccacg
      601 gccgaaatag tgggcctcga caaattcgaa tcgcccgccg agcgagagcc gccaggcgag
      661 ataggcgagg gccgggacgg cggccagggc gagcgccgtc gccgccgcgc cgcgaccttc
      721 gcgcgatctg aggcgccgca agcctccgtc ggccagccaa gtccagacaa aggggatcag
      781 caggagggcc ccattggccc gtgtccagac cccaagcgcc gccagcgcgg ccgcccagac
      841 ccaccggcgc ctgcgaagca tcgccagggc gccgaaggac aggcctatga aaagaccctc
      901 cgtgtagacc tgcgccagga acgccgcgcc aggccagatc aggagataga agcccgccct
      961 gacccgttcg ttcggctcgc tcgccgcggt gaggtcggcg atcgccagca cggcgccgag
     1021 cgctccggcc agggaaatga tcacgccagc caggctggcc gccgtgatcg gggccaggcc
     1081 aaacagcccg agcggcgcgg cgagcgcgcg catggccatc ggataggccg ggaagaaggc
     1141 gtagttgatc gacgtccagg tcggctgctc gctccgcagg ccgcgcttcg ggtcggtagg
     1201 ggctgacgcc ggcgagatta ccggcatgct cgggtcgtcg tatccgtgca gggcgatcga
     1261 cagatagtac tgggaatccc acgccacatg actgcccagg gcgccggtgc gcgccaggta
     1321 ggggcgacct ctaagactgt cggctccggt ctcgtcggcg ctgaagccgg tggcgtggtc
     1381 cggccgcagg agcggcagcc tggccggcgc gaaggcctga taggccatca tgatcgccgc
     1441 ccaacccagc cagatcagga tgatcgtcag cacgcccggg cgcgcagacc cggccgagat
     1501 ggagcctccc gatgccatgt ttctccccgg gtgaccgccg ttcggcagga tcgtccgcgg
     1561 gacgacgtta gcgggccctt aaccatggcg ccgcgagaaa tcgttcttct gctcagggat
     1621 tcgccgtgct tgcccgtctt cgcccgtttt tgccgaccgc ggtgctgctt ctcctgatcg
     1681 tctatttcgc gctcaacgcc ttctctggcg accgcgggct cctgacgtcc aatcagcgcg
     1741 acgagaccct gatcgccaag acccacgagc tcgcccaggt gcgcgcccag cgccaggacc
     1801 tggagatgcg cgcccgtctg ctgcgcgaca ccagcctttc ggccgatctg ctggaggaaa
     1861 gggcgcgctc cctgctaggc ttcgccgagc cgagggacta tgtggtcggc atgaagcctg
     1921 aggccctctt gcgggttcta gaggacttgg cgatcgatca cggagagacg catggcgcgt
     1981 gagcagaccg gcgcggccgg tcagcggaaa gccaacggcg ccgctgtaac ccgctcttcc
     2041 aaggaaaaag gggccaccaa gggcgaggcc ggcgccaagg atgagctgct aaaatactat
     2101 cgcgacatgc tgttgatccg tcgcttcgag gagcgggcgg gccagctcta tgggatgggc
     2161 ctgatcggcg gcttctgcca cctctacatc ggccaggaag ccatcgcggt cggcgtccag
     2221 gcggcgcaaa ggcccggcga ccaggtgatc accggctacc gcgaacacgg ccatatgctg
     2281 gcctgcggca tggaccccag ggaagtgatg gccgaactca ccggccgcgc ttcgggctcg
     2341 tcgcacggca agggcggctc gatgcacatg ttctcgacga aggcggcctt ctatggcggt
     2401 cacgggatcg tcggcgccca ggtcagcctc ggcaccggcc tggcgctcgc gaaccgctac
     2461 cgcggcgacg gcaaggtggc cttcacctac ttcggcgacg gcgccgccaa ccagggtcag
     2521 gtctatgaga gcttcaacat ggccgagctc tggagcctgc cggtcgtcta tgtgatcgag
     2581 aacaatcagt acgccatggg cacgtccatc gagcgctcat cggccgagac ccgcctgttc
     2641 atgcgcggcg cctcgttcaa gatcccgggg gaggaagtcg acggcatgga cgtgctggcc
     2701 gtaaaggcgg ccgccgccaa ggccgccgag cacgcccgct ccggcaaggg cccctacatc
     2761 ctggaaatga agacctatcg ttaccgcggc cactccatga gcgacccggc caagtaccgc
     2821 acccgcgacg aggtcgatga ggtccgcaag acccgagatc ccatcgacca catcgaggag
     2881 atgctggaga agaagggcta tgccgacgag gccgcactga aggccatcga cgccgaggtg
     2941 aagcgcatcg tcgccgacgc cgcggaattc gcccgcacca gccccgaacc cgatccgtcc
     3001 gaactgtaca ccgacgtcta tacggaagcc tcgtcggggg tgacggcatg accgacgttc
     3061 tgatgccggc gctctcgccc accatggagg agggcacgct cgccaagtgg cacgtgaagg
     3121 tcggcgacac ggtgaagtcc ggcgacgtga tcgccgaaat cgagaccgac aaggccacca
     3181 tggaggtcga agccgtcgac gaaggtgtcg tcgaggccat cctggtgccg gaaggctccg
     3241 aagaggtgaa ggtcaacacg cccatcgccc ggctgtcggg cgagggcgga gcggccccgc
     3301 cggcccgcgt tcaccaggag g
//
LOCUS       DATAJL010000389         3604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45575,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000389 DATAJL010000000
VERSION     DATAJL010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3604
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45575"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..539
                     /locus_tag="VHN39_07495"
     CDS             <1..539
                     /locus_tag="VHN39_07495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816219.1"
                     /translation="LQQLWAAIAKDWGAGAGHVELAAGLLSGVVSIPGCIAGGWLADR
                     IDRKLAYSLFGVTLSAVAVVMAFGPRTPMAFLIFACLYNFVVGFCYGAYSAVTLEAIG
                     KGAAGTKFNLISSLSNAPILIVTLVDGWAETKFGATGMLYTEAALGIGGVAIYSAVAL
                     ATRGMSWGVLFRRGSAAV"
     gene            complement(698..826)
                     /locus_tag="VHN39_07500"
     CDS             complement(698..826)
                     /locus_tag="VHN39_07500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816220.1"
                     /translation="MRTLILAAAALLLAGCGTYCPTDMSGLDAPPWNSPIPAPSHR"
     gene            950..1300
                     /locus_tag="VHN39_07505"
     CDS             950..1300
                     /locus_tag="VHN39_07505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816221.1"
                     /translation="MKRVLIAASAALALALCACATGPGSAYGGGGLAYNAYYDDAYGP
                     YYDGYWGRDGGFWYSSGRGAPFQRDSGQHFRRTAGEGAGASTGQRTDVQANVGAPAAH
                     AFHGVHSRGGIHRH"
     gene            complement(1313..1825)
                     /gene="ruvC"
                     /locus_tag="VHN39_07510"
     CDS             complement(1313..1825)
                     /gene="ruvC"
                     /locus_tag="VHN39_07510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEX2816222.1"
                     /translation="MNAPNHPLRILGLDPGLRRTGWGVVAVDGARLTHVAHGVIAPKD
                     TLAFAERLLILFDAIEQVIALHAPHEAAVEETFMNNNAQSALKLGHARACCLIAPARA
                     GLSVAEYAATVVKKAVVGTGAADKAQVGFMIRRLLPTAGDTTADAADALAVAIAHAHA
                     RRARTYLGAA"
     gene            1948..2523
                     /locus_tag="VHN39_07515"
     CDS             1948..2523
                     /locus_tag="VHN39_07515"
                     /inference="COORDINATES: protein motif:HMM:NF039496.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4287 domain-containing protein"
                     /protein_id="HEX2816223.1"
                     /translation="MSFQAYLDNIRARTGKGPDEFRALAEARGLLAPGVKAGAVAAWL
                     KDDFGLGRGHAMAIYESWRRGADGRRAPAEERLGKLFSGGRAAWREMFEDLLAQARAF
                     GGGEVAASAADKYVSLNRDGKKFAILQPGAAFLDLGFKVPGAEPTARVSLAGGWNPMV
                     THRVRVTGAAEIDAEVLGWLRRAYEAAAAKG"
     gene            2628..>3604
                     /locus_tag="VHN39_07520"
     CDS             2628..>3604
                     /locus_tag="VHN39_07520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HEX2816224.1"
                     /translation="MLLEPGTTCWRRETADRAALLIDMADYFDAAMTAMSKAKHSIHL
                     LNWAFEPDTLFHPRDGCTGPPDDRIANFLKRLARTRTRLDVRVLCWQSAAPVAATQRW
                     FPLADRWDFRGSEVKFVLDGKLPVGASHHQKMIVIDDAIGFCGGGDIGPDRWDTSEHL
                     DDDPRREKTKAQGKKGHPNDFDSRHEVMGVVEGAPARALGALFRDRWARATGEILPEP
                     AKVGPPRLKPVWPAGVPAQFKGVDVGLSRTAAAWKRYPQVREVEALHLASIREARACI
                     YMENQYFTSPLIAAELARRLAEPDGPEVILVSTEHSPSYFDQVTMDQTRL"
BASE COUNT          528 a         1198 c         1319 g          559 t
ORIGIN      
        1 ggctgcagca gctgtgggcg gcgatcgcca aggactgggg ggccggcgcc gggcatgtgg
       61 agctggcggc cggcctgctc tccggcgtgg tcagcatccc gggctgcatc gccggcggct
      121 ggctggccga ccgcatcgac aggaagctcg cctacagcct gttcggcgtc acgctgtcgg
      181 ccgtcgcggt cgtcatggcc ttcgggccgc gcacgcccat ggccttcctg atctttgcct
      241 gcctctacaa tttcgtggtc gggttctgtt acggcgccta ttcggcggtg accctggagg
      301 ccatcggcaa gggcgcggcg ggcaccaagt tcaacctgat ctcctcgctc tccaacgcgc
      361 cgatcctgat cgtcaccctg gtggacggct gggccgagac gaagttcggc gccaccggca
      421 tgctctacac cgaggccgcc ctggggatcg gcggcgtggc gatctattcg gctgtggcgc
      481 tggcgacgcg tgggatgagc tggggggttc tgttccggcg ggggtctgcc gcggtttagt
      541 gtgctggatt tgaagttcgc cccgtttacg gacaagcgcc gagcgaactt caaatccaaa
      601 gaagcacact agagacgtag gcttcctagt gtcctcatcg attccgaagt tcgtccggcg
      661 ccggccgcaa gcgcttgcga acttcggaat cgggacacta gcggtgcgat ggcgcaggga
      721 tgggcgagtt ccagggcggc gcatcgaggc cgctcatgtc ggtcgggcaa taggtcccgc
      781 agccggcgag cagcagggcg gcggcggcga ggatcagcgt tcgcatgacc ggaagctgag
      841 ccttgggttg gggcggaatt tgggcgcggc ggctccgccc cgggcgcgca accaatatcg
      901 ctgggcgccc ttaccctttc agggtccgtg gggagtttgg aacgatgaca tgaaacgcgt
      961 cttgatcgcc gcgagcgccg cgctcgcgct cgcactgtgc gcctgcgcca ccggcccagg
     1021 ctccgcctat ggcggcggag gcctagccta caacgcctac tacgacgacg cctacggccc
     1081 ctactacgac ggctattggg gtcgcgatgg cgggttctgg tactccagcg gccgcggcgc
     1141 gccgttccag cgcgacagcg gccagcactt ccgccgcacc gccggcgaag gcgccggcgc
     1201 cagcaccggc cagcggacgg acgttcaggc caacgtcggc gcgccggcgg cccacgcctt
     1261 ccacggcgta cacagccgcg gcgggataca tcggcactag ctcgaggttc ggtcaggccg
     1321 cgcccaggta ggtccgcgcc cgccgcgcgt gcgcatgggc gatggcgacg gcgagcgcat
     1381 cggcggcgtc ggccgttgtg tcgccggcgg tcggcagcag gcggcggatc atgaagccga
     1441 cctgggcctt gtccgcggcc cccgtcccca cgacggcctt cttgaccacg gtggcggcgt
     1501 attcggccac gctcagcccc gcccgcgccg gggcgatcag gcagcaggcc cgcgcgtggc
     1561 cgagcttcag cgccgactgg gcgttgttgt tcatgaaagt ctcctccacc gccgcctcgt
     1621 gcggggcgtg gagcgcgatc acctgctcga tggcgtcgaa caggatcagc agccgttcgg
     1681 cgaaggccag cgtgtccttg ggcgcgatca ccccgtgggc cacgtgggtc agccgcgcac
     1741 cgtcgaccgc caccacgccc cagccggtgc ggcgcaggcc cgggtcgagg ccgaggatcc
     1801 ggagagggtg attcggcgcg ttcatcgtct gttccagtgt ggaccagcca gagatgaggt
     1861 ggaagggttg aggaagggtg agtggaggct tgtcggcaag cgacgtcttg gtgcgtcctt
     1921 gagaatgacc cacgaggacc ccgtcgcatg agcttccagg cctatctcga caatatccgc
     1981 gccaggaccg gcaaggggcc ggatgagttc cgcgccttgg ccgaggcccg ggggctgctg
     2041 gcgcccggcg tgaaggcggg cgcggtggcg gcctggctga aggacgactt cggcctgggg
     2101 cgcgggcacg ccatggcgat ctacgaaagc tggcggcggg gcgctgacgg gaggcgggcg
     2161 ccggcagagg aacggctggg aaagctgttc tcgggcggac gggcggcctg gcgtgagatg
     2221 ttcgaggacc tgttggcgca ggctcgcgcg ttcggcggcg gcgaggtcgc ggcctcggcg
     2281 gcggacaaat atgtgagcct caaccgcgac gggaagaagt tcgcgatcct gcagccgggg
     2341 gcggcctttc tggacctggg cttcaaggtc cctggcgcgg agccgaccgc gcgggtctcc
     2401 ctggcgggcg gttggaatcc aatggtcacc caccgcgtgc gcgtgaccgg cgccgcagag
     2461 atcgacgccg aggtgctggg ctggctgcgg cgcgcctacg aggccgccgc cgcgaagggt
     2521 tgatccgggg cgggaacggc cttggccttg agctgcttat ccttgcttgc cggcttgggc
     2581 ttgccggctt gggcttgccg atggggggct tggcgggaag gttgccgatg ctgctcgaac
     2641 ccggaaccac ctgctggcgg cgcgagaccg ccgaccgcgc cgcgctgttg atcgacatgg
     2701 ccgactattt cgacgcggcg atgaccgcca tgtccaaggc caaacactcc atccacctgc
     2761 tcaactgggc cttcgagccc gacaccctgt tccacccgcg ggacggctgc acggggccgc
     2821 cggacgaccg gatcgccaac ttcctgaagc gcctggcccg gaccaggacc aggctcgacg
     2881 tccgcgtgct gtgctggcag tcggccgcgc cggtggcggc gacccagcgc tggttcccgc
     2941 tggctgaccg atgggatttc cggggcagcg aggtgaagtt cgtgctcgac ggcaagctgc
     3001 cggtgggggc cagccaccat cagaagatga tcgtcatcga cgacgccatc ggcttctgcg
     3061 gcggcgggga catcggtcca gaccgatggg acacctcaga gcacctcgac gacgaccccc
     3121 ggcgcgagaa gaccaaggcc cagggcaaga agggccaccc caacgacttc gacagccgcc
     3181 acgaggtgat gggggtggtc gagggcgcgc cggcccgggc gctcggcgcc ctgttccgcg
     3241 accgctgggc gcgcgccacc ggcgagatcc tgcccgaacc cgcgaaggtt gggccgccgc
     3301 ggctcaaacc cgtctggccg gccggcgtcc cggcgcaatt caagggcgtg gatgtcggtc
     3361 tgtcgcgcac cgccgcggcc tggaagcgct atccgcaggt ccgcgaggtg gaggccctgc
     3421 acctggcttc gatccgcgag gccagggctt gcatctatat ggagaaccag tacttcacct
     3481 cgccgctgat cgccgcggaa ctggcccggc ggctggccga gccggacggc cccgaggtca
     3541 tcctggtctc gaccgagcac tcgccgagct acttcgacca ggtgaccatg gaccaaaccc
     3601 ggct
//
LOCUS       DATAJL010000390         3049 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106147,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000390 DATAJL010000000
VERSION     DATAJL010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3049
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106147"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1948)
                     /locus_tag="VHN39_07525"
     CDS             complement(<1..1948)
                     /locus_tag="VHN39_07525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2816225.1"
                     /translation="MPAVAPPPSPTVEVVVVYPPRLAPLGGEAAFSAVQIGPETLKET
                     PRLDQALETAPGVSLFRRTTSLSANPTTQGVSLRGIAGSGAGRALVTLDGAPVNDPFG
                     GWVIWTALPSEGLEGATIVRGAGAGPYGAGALTGVIALQERGGRDGLGAVDISAGERN
                     SYRGAVSGGTQSLLLTAAAESTDGYTPVRGKIAGAADTPLSLRDETISARLQHDFGDV
                     QAAARVGAFEEKRGAGLLGAASTAKGTSATFTLAQPATSGVGGWRLQAWARTSDLANS
                     SVAVAANRATTTPANNEFSTPAHGYGVNAALQGHWGVATWELGADARWADGTDHEQFK
                     VVNGAFTMGRDAGGKTFVGGIYLESAYDQGPWLVTGGARLDEWHSVDAQRHEFVLATG
                     VTTLNSSAPEASGTVPTGRIGVRYTLTPDLWLRTAAYAGFRPPTLNELHRPFRVGNDV
                     TEANPLLTPEKLYGIEAGLGGDTGVHWQLTGFYNQLDDPILNVTLGFGPGVIASLPLA
                     GFIPAGGTLRQRQNAGEIDAWGVEGDLSGDLATTLSWRTAFAYTHARVDGGSTAPQLT
                     GLRPAQTPEWTVTAGLDWHALEKLTLSSGVRYMSLAFEDDQNIRRLPPGAELDLRGAW
                     SLAPGEEVYLAVDNVADAKISTGKT"
     gene            2009..2770
                     /locus_tag="VHN39_07530"
     CDS             2009..2770
                     /locus_tag="VHN39_07530"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2816226.1"
                     /translation="MQSATVKVAIVTGAGSGIGRAVSLALLGAGWSVVLAGRRPELLE
                     ETASLTGEAASRALSHPTNVADAASVAALFDAARARFGRLDLLFNNAGTGAPPVPLED
                     LSLDHWKRVVDINLTGAFLCTQAAFRVMKNQDPRGGRIINNGSISAHVPRPRSVAYTA
                     TKHAITGLTRSASLDGRVYDIACGQIDIGNAGTEMTRAMSKGVMQADGSIAPEAIMDV
                     SAVADAVLYMAGLSLDANVQFMTVMATKMPFIGRG"
BASE COUNT          441 a         1064 c         1075 g          469 t
ORIGIN      
        1 ctgtcttgcc ggtggagatc ttggcgtcgg cgacgttatc gacggccaga tagacctcct
       61 cgccaggcgc caggctccag gcgccgcgca ggtcgagttc ggcgccgggg ggaagccggc
      121 ggatgttctg gtcgtcctcg aacgccaggc tcatgtagcg cacaccgctg gagagcgtca
      181 gcttctccag cgcatgccag tcgaggccgg cggtcaccgt ccattccggc gtctgggcgg
      241 ggcggaggcc ggtgagttgc ggggcggtcg agccgccgtc tacgcgggcg tgagtgtagg
      301 cgaacgcggt gcgccaggag agcgtcgtgg cgaggtcgcc ggacagatcg ccctccacgc
      361 cccaggcgtc gatctcgccg gcgttctggc gctgccgcag ggtgccgcca gccgggatga
      421 agcccgcgag gggaaggctt gcgatgactc ccgggccgaa gcccagggtg acgttgagga
      481 tcgggtcgtc gagctggttg tagaagccgg tcagctgcca gtggacgccg gtgtcgccgc
      541 cgaggcccgc ctcgattccg tagagcttct ctggcgtgag cagcggattg gcctcggtga
      601 cgtcgttgcc gaccctgaac ggccggtgca gctcattcag cgtcggcggc cggaagccgg
      661 cgtaggcggc ggtgcgcagc cacaggtcgg gcgtgagcgt gtagcgcacc ccgatgcggc
      721 cggtgggtac ggttcccgac gcctccgggg ccgaggagtt cagcgtcgtg acgccggtcg
      781 ccagaacgaa ctcgtggcgc tgggcgtcga cggaatgcca ctcgtcgagc cgcgccccgc
      841 cggtcaccag ccagggcccc tggtcgtagg cgctctccag ataaatcccg ccgacgaagg
      901 tcttgccgcc ggcgtcgcgg cccatggtga aggcgccgtt gacgaccttg aactgctcgt
      961 ggtcggtgcc gtcggcccag cgcgcgtcgg cgcctagctc ccaggtcgcc acgccccaat
     1021 gcccctgcaa ggcggcgttg acgccatagc cgtgggccgg cgtcgagaat tcgttgttgg
     1081 ccggcgtcgt ggtggcgcgg ttggccgcca cggcgaccga gctgttggcc aggtcgctgg
     1141 tccgcgccca ggcctgcaac cgccagccgc ccaccccgct ggtggccggc tgagccaggg
     1201 tgaaggtcgc cgacgtgccc ttggctgtcg aggcggcgcc gagcaggccc gcgccgcgtt
     1261 tctcctcgaa agcgccgacc cgggcggcgg cctggacgtc tccgaagtcg tgctgcaggc
     1321 gagccgagat ggtctcgtcg cgtaggctga gcggcgtgtc cgccgccccg gcgatcttgc
     1381 cgcgcacggg ggtgtagccg tcggtggact ccgctgcggc ggtgagcagc aggctctgtg
     1441 tcccgccgga gacggcgccg cgatagctgt tgcgttcgcc agccgaaatg tccactgcgc
     1501 ccaggccatc gcggccaccg cgctcttgca gggcgatgac gccggtcagc gcgccagcgc
     1561 catagggccc ggcgccggcc ccgcgtacga tggtcgcgcc ctccaggccc tcggacggaa
     1621 gcgcggtcca gatcacccag ccgccgaacg gatcgttcac cggcgcgccg tccagggtca
     1681 ccagcgcgcg gcccgcgcca gagccggcta tgccccgcag cgacacgccc tgggtggtgg
     1741 gattggccga gagcgaggtc gtgcgccgga acagcgacac gcccggcgcg gtctccagcg
     1801 cctggtcgag ccggggcgtt tccttcagcg tctccgggcc gatctgcacg gcgctgaacg
     1861 ccgcttcgcc gcccaggggc gcgagcctgg gcggatagac cacgacgact tcgacggtcg
     1921 ggctgggcgg aggcgctaca gcaggcatcg gcatttcccc acgagcccca tgctgggctt
     1981 tcgcgggggt tagcgctatc cagccggaat gcagagcgca acagtcaagg tcgccatcgt
     2041 caccggcgcc ggtagcggga tcggccgggc tgtgtccctg gcgctactag gcgcgggctg
     2101 gtcggtggtc ctggccggcc ggcggcccga gctgcttgag gagaccgcga gcctgaccgg
     2161 cgaagccgcc agccgcgccc tgtcgcaccc gaccaacgtc gctgacgcgg cctccgtcgc
     2221 ggccctcttc gacgccgcca gggcccgttt cggccgcctt gacctgctgt tcaacaacgc
     2281 cgggaccggc gccccgcccg tgccgctgga ggatctctcc ctcgatcact ggaagcgggt
     2341 ggtggacatc aacctgaccg gcgccttcct ctgcacccag gcggcgttcc gcgtgatgaa
     2401 gaaccaggac ccgcgcggcg gacggatcat caacaacggc tcgatctcgg ctcatgtacc
     2461 gaggccccgc tcggtcgcct acaccgccac caaacatgcg atcaccggcc tgacccgctc
     2521 ggcgtccctg gacggccgcg tctacgacat cgcctgcggc cagatcgaca ttggcaacgc
     2581 cggcaccgag atgacgcgcg ccatgagcaa gggcgtcatg caagccgacg gctccattgc
     2641 gccggaggcc atcatggatg tctccgccgt cgccgacgcc gtgctctaca tggccggcct
     2701 gtcgctggac gccaacgtcc agttcatgac cgtcatggcg accaagatgc ccttcatcgg
     2761 gcgcggctga gccgccttca tatctctggg ccgccagtcg cacgggcagc tcgcgcccga
     2821 ctcttgtgca atgcgggatt tctcataccg cgatgcacca ttttcgattg cacggtatgg
     2881 aatcgcggct agtttggcct caggcgacag gctgacgtca gtatccggcc gccgccgaag
     2941 gaagcgccgt gaaaggggtt ggaagcaacc tcaatccgga accaaacacc atgaaccgta
     3001 tcgttaacct ggcggccgga tactgacgtc agcctgtcgc ctgaggcca
//
LOCUS       DATAJL010000391         7477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19819,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000391 DATAJL010000000
VERSION     DATAJL010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7477
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19819"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..932
                     /locus_tag="VHN39_07535"
     CDS             <1..932
                     /locus_tag="VHN39_07535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030257 - type III protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0046034 - ATP metabolic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FliI/YscN family ATPase"
                     /protein_id="HEX2816227.1"
                     /translation="VGERLDLRVRAMNVFATCCRGQRLGVFAGSGVGKSVLLSMLAKN
                     ADCDAVVVGLIGERGREVREFIEETLGEEGLKRAIVVVATSDEPALKRRQAAYMTMAI
                     AEFLRDQDMEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLERAGP
                     GPIRPDGTNAGPITGIFTVLVDGDDHNEPIADAVRGILDGHIVMERAIAERGRFPAIN
                     VLKSISRTMPGCHLPHEREIVKSARQALSSYANMEELIRIGAYRTGADPLVDRAIALN
                     PALEAFLAQDKDEVTSLQAGFERLDGILNSVPQ"
     gene            929..1354
                     /locus_tag="VHN39_07540"
     CDS             929..1354
                     /locus_tag="VHN39_07540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HEX2816228.1"
                     /translation="MSWSESLIKLATYEVENRQLRLAEIAKRRADAEIRLAVLCAEGE
                     AEAKHAQRDAEAGWYMVGYGDGLRIRKAAVQADLDLIAVEELGARDALAQAFEEQKKY
                     EQVAENARLADVKETKRRENAELDEVGMQAARRAAGSAA"
     gene            complement(1351..1722)
                     /locus_tag="VHN39_07545"
     CDS             complement(1351..1722)
                     /locus_tag="VHN39_07545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4282 domain-containing protein"
                     /protein_id="HEX2816229.1"
                     /translation="MRRPLKRPDGTGSAVVWDLLTFEHLMTNQVIHIIYWAGLALIAL
                     GAFGTMGAAVGLVIRDPSLFGLLLAIPVVIGGFLVMGALILLWRSFCEFYVAIFKISE
                     DLAVLRADVEAERKRVGDPTA"
     gene            complement(1812..2711)
                     /locus_tag="VHN39_07550"
     CDS             complement(1812..2711)
                     /locus_tag="VHN39_07550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003164572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX2816230.1"
                     /translation="MILILLLSVLALASGIFVLALGTAILRRPTAPALEGVLLSAVTS
                     FFDALGIGCFAPTTAYLKFRRLVPDELIPATMITGYALAASTEGFVFITAVKVDPLLL
                     GASITASVLGAVLGVSIAARLPVTPIRLTLGLGLLIAAATFALSNLGLMPHGGAATSL
                     PPLLAAVVVVASFGLGILMNLGIGNFAPTLILVSLMGMDPRAAFPIMMGSAALLMVTS
                     GVRIVSARPLNLALVLGMTLGGIPAVLVAALIVRSLPLETLRWGVVAVVTYAGAVMLH
                     AALVRRSAPAGPAAEETGAHLPG"
     gene            2843..3397
                     /locus_tag="VHN39_07555"
     CDS             2843..3397
                     /locus_tag="VHN39_07555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816231.1"
                     /translation="MTIPADEAADALKVAEAAAGRSATAHGYRLSSGHLFVWGAVWIV
                     ANIACQISLQLGQIAWMVAAVAGIIGSALIGRRQKSIGAKGGGSARALVIAAALGGFG
                     FSVQMIAPPLSFAQANAVACLAVGAVYIGMGATAGLRLSAVGAAVMVATVAGWILAPA
                     YFFAWIAVAGGGALILGGFWFRKV"
     gene            3400..3702
                     /locus_tag="VHN39_07560"
     CDS             3400..3702
                     /locus_tag="VHN39_07560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2816232.1"
                     /translation="MADADEIIHQSTRLRLMSVLNALPDGEALDFKRLKAIAQATDGN
                     LGAHLATLEKAGYIAIDKDFVGKRPRTQARISRAGRRAFERHLQYLRDIIEGVAPE"
     gene            3764..4294
                     /locus_tag="VHN39_07565"
     CDS             3764..4294
                     /locus_tag="VHN39_07565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816233.1"
                     /translation="MNLSMSVIGFFHTLACILALGVGVWLMVGRKGTPRHRRWGDIYT
                     GAILFASVSSLTIYTRHAFTAAHWFGVIAILLSAGGFALGRWHGKGNAWKYGHIFCMV
                     GSYYVLVGGGVNEVFLRVNTLRPIFRTQPQVVGEVHGLAILTFLLLIIAFMAATAISA
                     FRFNRRLNARLSAKAA"
     gene            4297..5253
                     /locus_tag="VHN39_07570"
     CDS             4297..5253
                     /locus_tag="VHN39_07570"
                     /inference="COORDINATES: protein motif:HMM:NF020416.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase/BAAT C-terminal
                     domain-containing protein"
                     /protein_id="HEX2816234.1"
                     /translation="MSLRKLTLGLLAASALGLAVTQAAAQLAAPEPVTTLGPGMVGAY
                     YPPPAGHTDVVLVLGGSEGGLQGSQPLARRIAEHGLGTLALAYFGAPGLPQALEKVPL
                     ESLEAGVDWVRKQPGMAGRRLVVLGVSKGGEAALLLASRDPRLCAVVAAVPSSVVWAG
                     IDMAHPTIPVTVSSWATGGKSMAFVPYADGPFRGVRDLYDRSLVKAAPDAAIPVERIR
                     GPVLLISGKSDQLWPSTPMADAVMARLEAKHFAYAHTHLAYDNAGHAVFGPPLPADSP
                     NMARLAGLGGTPEGNQAARVDNWPKALAFLDQAFAGKTCAGR"
     gene            complement(5264..7354)
                     /gene="flhA"
                     /locus_tag="VHN39_07575"
     CDS             complement(5264..7354)
                     /gene="flhA"
                     /locus_tag="VHN39_07575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEX2816235.1"
                     /translation="MADASLPSRYGQTPNARDVWGWIARGEVALALGVVGIVVLLILP
                     IPAFLLDLLLAISITSAVLILMTSLLIKKPLEFTGFPMVLLVTTLYRLALNIASTRLI
                     LGHGHEGVHGAGHIIEAFGKLMTGGSFVIGLIVFAILVIVNFTVITKGSGRIAEVAAR
                     FTLDSMPGKQMAIDADLSAGLIDETEAKKRRKDLEQESTFFGAMDGASKFVRGDAVAG
                     LIIVAINIIGGILIGVLQHHIPIGQAATTYTLMTVGDGLVSQIPALIISISAGFLVSK
                     SGVEGSADKALVTQLAMNPVSLGMVSAAAGVIALVPGMPIIPFAAISIGAGALSWRRS
                     QKSMEPVPVEITPTVAQADEPIAQTLAIDEIKIELGYGLLGLINDLEGRRLTDQIKAL
                     RRTLASDFGFVMPSVRILDNMRLPSQGYAIRIKEMEAGAGEVRLGHMMAMDPRGGQVE
                     LPGEHVREPAFGLPATWVDEALREEATFRGYTIVDPATVLTTHLTEILKENMPDLLSY
                     SEVQKLLKDMPAEQKKLVEDLVPSVVTATTIQRVLQALLRERVSIRDLPAILEGIGEA
                     APHTASVTLLVEQVRARLARQLSFAHRGEDGSLPIVTLTPEWENAFADSLVGTGDDKQ
                     LALAPSRLQDFVRGVRETFERAALAGDSPVLLTSPNIRPYVRSIIERFRGQTPVMSQN
                     EVHPRAKLKTVGTI"
     gene            complement(7364..>7477)
                     /locus_tag="VHN39_07580"
     CDS             complement(7364..>7477)
                     /locus_tag="VHN39_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2816236.1"
                     /translation="AANILGISIRTLRNKLKEYTEAGVSVPAPQMGAASAA"
BASE COUNT         1205 a         2471 c         2667 g         1134 t
ORIGIN      
        1 gcgtcggcga gcggctggac ctgcgcgtgc gggcgatgaa cgtcttcgcg acctgctgcc
       61 gcggccagcg cctgggcgtc ttcgccggct ccggtgtcgg caagtcggtg ctgctctcca
      121 tgctggccaa gaacgccgac tgcgacgcgg tcgtggtggg gctgatcggc gaacggggcc
      181 gggaggtccg cgagttcatc gaggagacgc tcggcgaaga gggcttgaag cgcgccatcg
      241 tggtggtcgc gacctccgac gagccggccc tgaagcgccg ccaggccgcc tacatgacca
      301 tggccatcgc cgaattcctt cgcgaccagg acatggaagt cctgtgcctg atggacagtg
      361 tcacgcgctt cgccatggcc cagcgcgaga tcggtctcgc cgccggcgaa ccgccgacca
      421 ccaagggcta tacgccaacc gttttcaccg aactgccgaa gctgctggag cgcgccggtc
      481 ccgggccgat tcgaccggac ggcaccaacg ccggaccgat caccggcatc ttcaccgtcc
      541 tggtggacgg cgacgaccac aacgagccga tcgccgacgc ggtgcgcggg atcctggacg
      601 gtcacatcgt catggagcgc gccatcgccg agcgcgggcg ctttccggcg atcaatgtgc
      661 tgaagtcgat cagccggacg atgccgggct gccacctgcc gcatgagcgc gagatcgtga
      721 aatccgcgcg ccaggccctg tcgtcctacg ccaacatgga agagctgatc cgtatcggcg
      781 cctaccgcac tggcgcggat ccattggttg atcgggccat cgcgctcaac ccggcgctgg
      841 aggccttcct ggcgcaggac aaggacgagg tgaccagcct gcaggccggc ttcgaacggt
      901 tggacggcat cctgaatagc gtgccccaat gagctggtca gagtcgctca tcaagctggc
      961 cacctacgag gtggagaacc gccagctgcg cctggccgag atcgccaaac gccgcgccga
     1021 cgccgagatc cggctggccg tgctctgcgc cgagggcgag gccgaggcca agcacgccca
     1081 gcgggacgcg gaggccggct ggtacatggt cggctacggc gacggcctgc gcatccgcaa
     1141 ggccgcagtc caggcggatc ttgacctgat cgcggtcgag gagctgggcg cgcgcgatgc
     1201 gctggcgcag gccttcgaag agcagaagaa gtacgagcag gtcgccgaga acgcacgctt
     1261 ggccgacgtc aaggaaacca agcgccgcga gaacgccgag ctcgacgaag tgggcatgca
     1321 ggccgctcgg cgggctgccg ggtccgcagc ctaggctgtc ggatcgccga cgcgtttgcg
     1381 ctcagcctcg acgtcggcgc gcagaaccgc gaggtcctcg ctgatcttga agatcgccac
     1441 gtagaactcg cagaacgagc gccagagcag gatcagcgcg cccatcacca ggaagccgcc
     1501 gatcaccacg ggaatggcca gcagcaggcc gaacagcgag gggtcgcgga tcaccaggcc
     1561 caccgccgcg cccatggtcc cgaaggcgcc gagcgcgatc agcgccaggc ccgcccaata
     1621 gatgatgtgg atgacctggt tggtcatcag gtgctcgaag gtgagcaggt cccacacgac
     1681 ggcggagccc gtaccgtctg gccgtttgag aggtcgccgc atccgtatcc caaaactcgc
     1741 gcgaagcttc gtcggcgctt cgtcgcccga accgctacca gcccgggcgg gcggcggcaa
     1801 tggcgggcgg ttcagcctgg caggtgcgcg cccgtctcct cggcggcggg tcccgccggg
     1861 gcggatcgac gcaccagggc ggcgtgcagc atcactgcgc ccgcgtaggt gacgacggcg
     1921 acgacgcccc agcggagcgt ctccagcggc agtgagcgca cgatgagagc cgcgaccagc
     1981 acggccggga tgccgcccag ggtcatgccg aggacgagcg cgaggttgag cggccgtgcg
     2041 gacacgatcc tgacgccgct ggtcaccatc aggagcgccg ccgagcccat catgatcggg
     2101 aaggccgccc gcgggtccat gcccatgagg ctgaccagga tcagggttgg ggcgaagttg
     2161 ccgatgccga ggttcatcag gattccgagg ccgaagctgg cgaccacgac cacggcggcc
     2221 agcaggggcg gcaggctggt cgccgccccg ccatgcggca tcaggccgag gttcgaaagc
     2281 gcgaaggtcg ccgccgcgat aagcaggccc aggcccaggg tcaggcggat gggcgtgacc
     2341 ggcaggcgcg cggcgatcga tacgccgaga acggcgccca gcacagaggc tgtgatcgac
     2401 gcgccgagga gcaggggatc gaccttgacg gccgtgatga agacgaagcc ctccgtcgac
     2461 gcggccagcg catagccggt gatcatggtg gcggggatca gttcgtccgg cacgagccgg
     2521 cggaacttca ggtaggccgt cgtgggcgca aaacagccga tgccgagcgc gtcgaagaag
     2581 ctggtgaccg cgctgagcag cacgccctcc agcgcgggcg ctgtcggccg ccgcaggatc
     2641 gccgtgccca gcgccaggac gaagatcccg ctcgccaggg ccagcacgga cagcaacagg
     2701 atcaggatca tgatggcttg agccccttcc gcgctgcgtt cgggggcacc gtcgcacgcc
     2761 acgcggctgc gcggaacgcc tcgcggcggc gcttgacgca ccgcgcagac agaatactct
     2821 gcaatgcaga gtggagaatc tcatgacgat tccggccgac gaagccgcag acgccctgaa
     2881 ggtggccgag gccgccgccg gacgttccgc cacggcgcac ggataccgcc tctccagcgg
     2941 ccacttgttc gtctggggcg cggtctggat cgtggccaac atcgcctgcc agatctcgct
     3001 gcaactgggc cagatcgcct ggatggtcgc cgcggtcgcc gggatcatcg gcagtgcgtt
     3061 gatcgggcgc cgtcagaaga gcatcggcgc gaagggtggg ggctcggcga gggccctggt
     3121 gatcgccgcc gccctgggcg gcttcggctt cagcgtgcag atgatcgccc cgccgttgag
     3181 cttcgcccag gccaacgcgg tggcctgcct ggcggtaggc gcggtctata tcggcatggg
     3241 ggcgaccgcg ggcctgcggc tctcggcggt gggcgcggcg gtgatggtgg cgacggtcgc
     3301 cggatggata ttggcgccgg cttacttctt cgcctggatc gcggtcgccg gcggcggcgc
     3361 cctgatcctg ggtggcttct ggttccggaa ggtctgagct tggccgacgc tgacgagatc
     3421 atccaccagt cgacgcggct tcgcctgatg tcggtgctga acgccctgcc ggacggcgag
     3481 gcgctggatt tcaagcgcct gaaggccatc gcccaggcca ccgacggcaa cctgggcgcc
     3541 cacctcgcga ccctggaaaa ggccggctac atcgccatcg acaaggactt cgtcggcaag
     3601 cgcccgcgca cccaggcgcg catcagccgg gccggtcgcc gcgcctttga gcgccacctg
     3661 cagtacctgc gcgacatcat cgagggtgtg gcgccagaat aactccagtt gacagaacac
     3721 tctgcataac agagtatatg gcgaacgtcc cagcgaggtc gccatgaatc tctcgatgtc
     3781 cgtgatcggc tttttccaca cgctcgcctg catcctggcg ctgggcgtcg gagtctggct
     3841 gatggtgggc cgcaagggca cgccgcggca tcggcggtgg ggcgacatct atacgggcgc
     3901 catcctgttc gcgagcgtct ccagcctgac gatctacacg cgccacgcct ttaccgcggc
     3961 ccactggttc ggggtgatcg ccatcctgct gtcggcgggc ggctttgcgc tcggccgctg
     4021 gcacggcaag gggaacgcgt ggaagtacgg ccacatcttc tgcatggtcg gcagctacta
     4081 cgtcctggtg ggcggcgggg tgaacgaggt gttcctgcgg gtgaacacgc tccggccgat
     4141 cttccgcacc cagccgcagg tggtgggcga ggtgcacggc ttggcgatcc tgaccttcct
     4201 cttactgatc atcgcgttca tggccgccac ggccatcagc gccttccggt tcaaccgtcg
     4261 cctcaacgcc cgtctctcag caaaggcagc ctgatcatgt cccttcgcaa actgaccctc
     4321 ggcctcctcg cggccagcgc tcttggcctg gccgtcacgc aagccgccgc tcagctggcg
     4381 gcgccggagc cggtgaccac cctcggccct ggcatggtcg gcgcgtacta tccgccgccc
     4441 gctggccaca ccgatgtggt gctggtgctg ggcgggtcgg aaggcggcct gcagggttcc
     4501 cagccgctcg cccgccggat cgccgagcac gggctcggca cgctggcgct tgcttacttc
     4561 ggcgcgcccg gcctgccaca ggccctggag aaggtgccgc tggaatcgct ggaggcgggc
     4621 gtcgactggg tgcgcaagca acccggaatg gccgggcggc gccttgtggt cctgggtgtt
     4681 tccaagggcg gcgaggcggc cctgctgctg gcctcgcgcg accccaggct ctgcgccgtg
     4741 gtggccgccg ttccgtccag cgtcgtctgg gccgggatcg acatggccca tcccacgata
     4801 ccggtcacgg tctcgtcatg ggcgaccggc ggcaagtcca tggccttcgt gccctatgcc
     4861 gatgggccgt ttcggggcgt gcgcgacctc tatgaccgca gcctggtcaa ggccgcgccg
     4921 gacgcggcca tcccggtcga gcgtatccgc gggcctgtcc tgctgatctc gggcaagtcc
     4981 gaccagctct ggccctcgac cccgatggcc gacgcggtta tggcgcggtt ggaggcgaag
     5041 cacttcgcct atgcgcacac ccacctggcc tacgacaacg ccggccacgc tgtgttcggc
     5101 ccgcccctgc cggccgacag cccgaacatg gcccgcttgg cgggcctggg cggcacgccg
     5161 gagggcaatc aggcggcgcg ggtcgacaac tggcccaagg cgctggcgtt cctcgaccag
     5221 gccttcgccg ggaagacctg tgccggccgc tgaagagcgg ccgctagatc gtcccgacgg
     5281 tcttcagctt ggcgcgaggg tggacctcgt tctggctcat cacgggggtc tggccgcgga
     5341 agcgctcgat gatcgagcgg acgtaggggc ggatgttggg gctggtcagc aggaccggtg
     5401 aatcgccggc cagggccgcg cgctcgaagg tctcgcggac gccgcgcacg aagtcctgaa
     5461 gacgtgaggg cgcgagcgcc agctgcttgt cgtcgccggt gcctacgagg ctgtcggcga
     5521 aggcgttctc ccactcgggg gtcagcgtga cgatcggcaa ggagccgtcc tcgccgcgat
     5581 gggcgaagga gagctgacgg gcgaggcgcg cgcggacctg ctcgaccagc agggtgactg
     5641 aggcggtgtg cggcgcggcc tcgccgatgc cttccaggat cgccggcagg tcgcggatcg
     5701 agacccgctc gcgtagcagg gcctgcaaca cgcgctggat cgtcgtggcg gtgaccaccg
     5761 agggcaccag gtcctcgacc aacttcttct gttcggccgg catgtccttc aggagcttct
     5821 ggacttcgga gtaggagagc aggtccggca tgttctcctt gaggatctcg gtcaggtggg
     5881 tggtgagcac ggtggccgga tcgacgatgg tgtagccgcg gaacgtggct tcctcgcgca
     5941 gcgcctcgtc cacccaggtg gcgggcagac cgaacgcagg ctcgcggacg tgctcgccgg
     6001 gcagctccac ctggccgccg cgcgggtcca tggccatcat gtggcccagg cggacttcgc
     6061 cggcgccggc ctccatctcc ttgatccgga tcgcgtagcc ctggctgggc aggcgcatgt
     6121 tgtcgaggat gcggacggag ggcatcacga agccgaagtc ggaggccagc gtgcggcgga
     6181 gcgccttgat ctggtcggtg agccggcggc cctccaggtc gttgatcagg cccagcagac
     6241 catagccgag ctcgatcttg atctcgtcga tggccagcgt ctgggcgatc ggctcgtcag
     6301 cctgggcgac cgtgggagtg atctccaccg ggaccggctc catcgacttc tgcgaccggc
     6361 gccaggacag cgcgcccgcg ccgatggaaa tggcggcgaa gggtatgatc ggcatgcccg
     6421 gcaccagggc gatgaccccg gcggcggcgg agaccatgcc caggctgacg gggttcatgg
     6481 ccagctgggt aaccagcgcc ttgtcggccg aaccctcgac gccggacttc gagaccagga
     6541 agcctgcgga gatcgagatg atcagcgccg ggatctggct gaccaggccg tcgccgacgg
     6601 tcatgagggt gtaggtggtg gccgcctggc cgatggggat gtggtgctgc agcaccccga
     6661 tcaggatgcc gccgatgatg ttgatagcga cgatgatcag tccggcgacc gcgtcgccgc
     6721 ggacgaactt tgacgcgccg tccatggccc cgaagaaggt ggattcctgc tccaggtcct
     6781 tgcggcgctt cttggcctcg gtctcgtcga tcaggcccgc cgacaggtcg gcgtcgatgg
     6841 ccatctgttt gccgggcatg gagtcgagcg tgaagcgggc cgcgacctcg gcgatccgcc
     6901 cggagccctt ggtgatcacc gtgaaattga cgatcaccag gatggcgaag acgatcaggc
     6961 cgatgacgaa gctgccgccg gtcatcagct tgccaaaggc ttcgatgatg tggcccgcgc
     7021 cgtggacgcc ctcgtggccg tgcccgagga tcaggcgggt ggaggcgatg ttcagcgcca
     7081 ggcgatagag ggtggtgacc agcagcacca tcggaaagcc ggtgaattcc agcggcttct
     7141 tgatgagcaa cgaggtcatc aggatcagga cagcgctggt gatcgagatc gccagcagca
     7201 agtccagcaa gaacgccggg atcggcagga tcagcaggac gacgatgccg acgacgccca
     7261 gcgccagggc cacctcgcca cgggcgatcc agccccacac gtcgcgcgcg ttgggggtct
     7321 ggccgtagcg cgagggaagc gaggcgtcag ccatggatgc tcatcaggcg gcggaggccg
     7381 ctcccatctg gggcgcgggc accgagacgc cggcctcggt atattccttg agcttgttgc
     7441 ggagcgtccg gatcgagatg cccaggatgt tggcggc
//
LOCUS       DATAJL010000392         2254 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_7040,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000392 DATAJL010000000
VERSION     DATAJL010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7040"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..890)
                     /gene="proB"
                     /locus_tag="VHN39_07585"
     CDS             complement(<1..890)
                     /gene="proB"
                     /locus_tag="VHN39_07585"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEX2816237.1"
                     /translation="MSGLSKAKRIVVKVGSALLVGPDGADRAWLAAFAADVARLRARG
                     QQVLIVSSGAGALGRRRLSLPKRALTLPEKQAAAAAGQSALMRAWEEALEPFGIHAAQ
                     ILLTRDDTEVRRRWLNARATVETLLALGVAPVVNENDTVVTEEIRYGDNDRLAARVAQ
                     MIGADVLVLLSDVDGLYTADPRHDPSAEHLPRVARLTPEIEAMAGGANTGAGVGTGGM
                     ATKLAAARIAAAAGCTTVITLGSRPAPLQAVEDGERATVIEASTTPVAAYKTWIAGSL
                     APAGALVVDAGAAEAVRRGK"
     gene            complement(887..1945)
                     /gene="obgE"
                     /locus_tag="VHN39_07590"
     CDS             complement(887..1945)
                     /gene="obgE"
                     /locus_tag="VHN39_07590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEX2816238.1"
                     /translation="MKFLDECKIFIRSGNGGGGAVSFRREKYIEYGGPDGGDGGRGGD
                     VWIEAVEGLNTLIDFRYHQHFKAETGVHGMGRNRHGHNGADAVMKVPVGTQVFAEDKE
                     TLLLDMETAGQRVRLLKGGNGGFGNAYFKSSVNQAPTHANPGQDGVEQWIWLRLKLIA
                     DVGLVGLPNAGKSTFLAAASAAKPKIADYPFTTLAPNLGMVDLSVGERFILADIPGLI
                     EGASEGAGLGVRFLGHVERTATLIHLVDGTQDDVVEAWKTVRHELEAYGDELGDKTEF
                     LVLSKVDALDKETRKAKAKALAKASGAKVRQVSGVSGEGVTELLREAYALVRQRKGEE
                     AADALEASGEAPEDWAPS"
     gene            complement(1942..>2254)
                     /locus_tag="VHN39_07595"
     CDS             complement(1942..>2254)
                     /locus_tag="VHN39_07595"
                     /inference="COORDINATES: protein motif:HMM:NF014669.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015225 - biotin transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015878 - biotin transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEX2816239.1"
                     /translation="FKGGLEPFTGPTAGFLLAFLVAGPLASWLAPRAKGGDLFALFLA
                     GHALVLTLGWAWLAVQVGAARAFAVGVQPFFFGAIAKSAVATIIVMLAKARFSRASVT
                     P"
BASE COUNT          322 a          885 c          714 g          333 t
ORIGIN      
        1 ctcttgcccc gccgcacggc ttccgccgcg cccgcgtcca ccaccagcgc gccggccggg
       61 gccagcgagc ccgcgatcca ggtcttgtag gccgccacag gcgtcgtcga ggcctcgatc
      121 accgtggccc gctcgccgtc ctccaccgcc tgcagcggcg ccgggcgcga ccccagggtg
      181 atcacggtcg tgcagcccgc ggccgcggcg atcctcgcgg cggcgagctt ggtggccatg
      241 ccgccggtcc cgacgccggc gcccgtgttg gcgcccccgg ccatggcctc gatctcaggc
      301 gtcaggcgcg ccacgcgcgg cagatgctcc gcagacggat catgccgcgg atcggcggta
      361 tagagcccgt ccacgtccga cagcagcacc agcacatcgg cgccgatcat ctgggccacg
      421 cgggcggcga gccggtcgtt gtcgccgtag cggatctcct cggtgacgac cgtgtcgttc
      481 tcgttgacca ccggcgccac gcccagcgcc agcagggtct ccacggtcgc tcgcgcgttc
      541 agccagcgtc ggcgcacctc ggtgtcgtcg cgggtcagca ggatctgggc ggcgtggatg
      601 ccgaagggct ccagcgcctc ttcccaggcc cgcatcaggg ccgactggcc ggcggcggcc
      661 gccgcctgct tctcggggag cgtcagggcc cgcttgggca gcgaaagcct gcgccgcccc
      721 aacgctccgg ccccggacga gacgatcagc acctgctggc cccgcgccct gagccgcgcc
      781 acatccgccg cgaacgccgc cagccacgca cggtccgcgc cgtccggtcc gaccagcaat
      841 gccgagccga ccttgacgac gatgcgtttc gctttcgaaa gcccgctcac gacggcgccc
      901 agtcctcggg cgcctcgccg ctggcctcca gcgcatcggc ggcctcctcg cccttgcgct
      961 gacgcaccag cgcataggct tcgcggagca gctccgtcac gccctcgccg gacacgcccg
     1021 agacctgccg caccttggcg cccgacgcct tggccagcgc cttggccttg gccttgcggg
     1081 tttccttgtc cagcgcgtcg accttcgaca gcaccagaaa ctcggtcttg tcgcccagct
     1141 cgtcgccata ggcttccaac tcgtggcgca cggtcttcca ggcctcgacc acgtcgtcct
     1201 gcgtcccgtc caccaggtgg atgagcgtcg ccgtgcgctc cacatggccc aggaaccgca
     1261 cgcccaggcc tgcgccctcg ctcgcgcctt cgatcagccc ggggatgtcg gcgaggatga
     1321 accgttcccc cacggagagg tcgaccatgc ccaggttggg ggccagcgtc gtgaacggat
     1381 agtcggcgat cttcggcttg gccgcgctcg ccgccgccag gaacgtcgac ttcccggcat
     1441 tgggcaggcc caccagcccc acatccgcaa tgagtttgag gcgcagccag atccactgct
     1501 ccaccccgtc ctggccgggg ttggcgtgcg tcggcgcctg gttcacggaa ctcttgaaat
     1561 aggcattccc gaacccgccg ttgccgccct tcaacaggcg cacccgctgg ccagccgtct
     1621 ccatgtccaa cagcagggtt tccttgtcct cggcgaacac ctgcgtcccc accgggacct
     1681 tcatcaccgc gtcggcgcca ttgtggccgt gccggttgcg ccccatgccg tgcaccccgg
     1741 tctcggcctt gaaatgctgg tggtagcgga agtcgatcag ggtgttcagc ccctccaccg
     1801 cctcgatcca gacgtcgccg cccctgccgc cgtcgccgcc gtccgggccg ccgtactcga
     1861 tgtacttctc gcgccggaac gacacggccc caccgccgcc gttgccggag cgaatgaaga
     1921 tcttgcactc gtcgagaaat ttcatggcgt cactgaagcc cgggaaaagc gggccttggc
     1981 cagcatcacg atgattgtgg ccacagccga tttggcgatg gccccgaaga agaacggctg
     2041 cacgcccacg gcgaaggccc tggcggcccc cacctggacg gcgagccagg cccagccgag
     2101 ggtcagcacc agggcgtggc cggccaggaa cagcgcgaag aggtcgcccc ccttggccct
     2161 cggcgcgagc cacgaggcca gcggccccgc caccagaaac gccagcagga accccgccgt
     2221 cggcccggtg aacggctcaa gtccgccctt gaat
//
LOCUS       DATAJL010000393         2410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45624,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000393 DATAJL010000000
VERSION     DATAJL010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45624"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..719)
                     /gene="pth"
                     /locus_tag="VHN39_07600"
     CDS             complement(102..719)
                     /gene="pth"
                     /locus_tag="VHN39_07600"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEX2816240.1"
                     /translation="MLLIAGLGNPGPTYARTRHNIGFMAVDEIARRWDFGPWRSRFRS
                     FACEGSIPTPDGPVKALILKPQTFYNEAGRAVGEALKFFKIEPENLVVFYDEIDLAPG
                     RFRMKAGGGAAGNNGVRSITAQVGPYYRRARLGTGHPGDKELVHGHVLSEFHKADLKW
                     VEPLMEACAEALPLLAAGEDEKYQTEVMRLAPADKLDPRKAARGE"
     gene            complement(767..1429)
                     /locus_tag="VHN39_07605"
     CDS             complement(767..1429)
                     /locus_tag="VHN39_07605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0008097 - 5S rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEX2816241.1"
                     /translation="MAEIVLNVEVREHTGTGGARVARREGLVPGILYGGDKEPVAIAV
                     KMNEFRKALYTGKLLGHLVTLKYGAETQPVIAKAVDLHPVTEVPQHFDLYRVSANQQI
                     KINVPLHFRHHDEAPGIKRGGTLNIVFHDVQVSCAADHIPEELIADLTGLDIGSSVRV
                     SDLTFPANVTPAVPADTVLATISGASTQADEDEAADTAASEGAAAEAAAEAAVPEAEG
                     EA"
     gene            complement(1553..>2410)
                     /locus_tag="VHN39_07610"
     CDS             complement(1553..>2410)
                     /locus_tag="VHN39_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816242.1"
                     /translation="SPGFASGSDVAQGLRTGASYEPGQLLRGAIAYGAVVALQDPAFV
                     AGVRKFAADPEQRRTIAYEIMKDPAYAVGFSGSSGAAGLVMTALGGDGRRLLMLGHSV
                     HQAAYDVQHQSWSKAEVSSRQERMEMAKSLSSQPGLGEIAETSRLQMAVAGSGQLGLT
                     GESASPPYTPLVIRSLAVAALAALGYADDASLAQVMPILSDPSSATCLSMSKLNLYQC
                     LAVAKPHYEDVFCLGQHVLEDTGHCLMKGVGAAEPVDPRVQAATDAALLKASTPTTDK
                     SRSKKHSRN"
BASE COUNT          373 a          779 c          869 g          389 t
ORIGIN      
        1 ggatggccca gagccacatg tagttctggc cggtgcggac gacatggacc gccatcagga
       61 tcgagaacag caggatcgcg ccggcgtaga gcatctggcc gctattcgcc gcgcgcggcc
      121 ttgcgcgggt cgagcttgtc ggccggcgcg aggcgcatga cttcggtctg gtacttctcg
      181 tcctcgccgg cggccagcag gggcagagcc tcggcgcagg cctccatcag gggttcgacc
      241 cacttcaggt ccgccttgtg gaactcggag agcacgtggc cgtgcaccag ctccttgtcg
      301 cccggatggc cggtgccgag ccgggccctg cggtaatagg ggccgacctg ggcggtgatc
      361 gagcgcacgc cattgttgcc cgccgccccg ccgccggcct tcatccggaa gcggccgggg
      421 gccaggtcga tctcgtcgta gaagaccacc aggttctcgg gctcgatctt gaagaacttc
      481 agcgcctcgc cgaccgcccg cccggcctcg ttgtagaagg tctggggctt gaggatgaga
      541 gccttcaccg gaccgtccgg ggtcggaatc gacccctcgc aggcgaagct gcggaagcgc
      601 gagcgccagg gtccgaagtc ccaccggcgt gcgatctcgt ccacggccat gaagccgatg
      661 ttatgccgcg tcctggcgta ggtcggcccc ggattgccga ggcccgcaat caacagcatc
      721 tggccccccg atcctgaccc aagagatcag agccgggcag cgaggactag gcctcgcctt
      781 cggcttccgg aacagcggct tcggcggcgg cctcggcggc ggcgccttcg ctggcggcgg
      841 tgtcggcggc ttcgtcttca tcggcctgag tcgaggcgcc cgagatggtg gccagcaccg
      901 tgtcggcggg caccgcgggg gtgacgttgg ccgggaaggt caggtcggaa acgcgaaccg
      961 aagagccgat gtccaggccg gtcaggtcgg cgatcagttc ctcgggaatg tggtcggcgg
     1021 cgcaggagac ctgaacgtcg tggaacacga tgttgagcgt gccgccgcgc ttgatgccgg
     1081 gcgcttcgtc gtggtgacgg aagtgcaggg gtacgttgat cttgatctgc tggttggccg
     1141 agacccggta gaggtcaaag tgctgcggca cctcggtgac cggatgcagg tcgacggcct
     1201 tggcgatgac cggctgggtc tcggcgccgt acttcagggt caccaggtgg cccaggagct
     1261 tgccggtgta gagcgccttg cggaactcgt tcatcttcac cgcgatggcc acgggctcct
     1321 tgtcgccacc gtacaggatg ccgggaacca ggccttcgcg acgggcgacg cgcgcgccgc
     1381 cagtgccggt gtgctcgcgc acttcaacgt tcaaaacgat ctcggccatg gccttgcctc
     1441 aaaacgaaac cgccgcgcgt agcgcgcgcg gcgtcaaaat ctgggaccgc ttagggtctt
     1501 ggggtgcgcg tagatacaca aaagcccccg cccgcgcaac gggcggaggg tcttaattcc
     1561 gcgagtgctt cttggagcgg gacttgtctg tcgtcggggt cgaagccttc agcagggccg
     1621 cgtcagtagc ggcctgaacg cgcggatcga ccggttcggc agcgcccacg cccttcatca
     1681 ggcagtggcc ggtgtcttcc aggacatgtt ggcccaggca gaagacgtcc tcgtagtgcg
     1741 gtttggccac cgccaggcac tgatagaggt tgagcttgga catgctcagg caggtggccg
     1801 agctcgggtc cgacaggatc ggcatcacct gggcgaggct cgcgtcgtcg gcgtagccga
     1861 gcgcggccag cgcggcgacg gccaggctgc ggatcaccag gggcgtgtag ggcgggctgg
     1921 cgctctcgcc ggtcaggccc agctggccgg agccggcgac cgccatctgc aggcgcgagg
     1981 tttcggcgat ttcgccgagg ccgggctgcg aggatagcga cttggccatc tccatccgct
     2041 cctggcggct ggagacctcc gccttggacc aggactggtg ctgcacgtca taggccgcct
     2101 ggtgcaccga gtggccgagc atgagcagcc tgcggccatc gccgccaagc gcggtcatca
     2161 ccaggcccgc ggcgcccgac gatcccgaga aacccacggc gtaggccggg tccttcatga
     2221 tctcataggc gatggtgcgg cgctgctcgg gatcggcggc gaacttgcgc acgcccgcca
     2281 cgaaggccgg gtcctgcagg gcgacgacgg cgccataggc gatggccccg cgcaagagct
     2341 ggccgggctc gtaggaggcg ccggtcctca ggccctgggc gacgtcagag ccactggcga
     2401 agcctggcga
//
LOCUS       DATAJL010000394         1671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106166,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000394 DATAJL010000000
VERSION     DATAJL010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106166"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VHN39_07615"
     CDS             <1..189
                     /locus_tag="VHN39_07615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816243.1"
                     /translation="TQAMRAAADKAGDPELMSLWAGQAVKLAKPGPAGEMVKLWWGEA
                     QRAAQALAARTAERAPKP"
     gene            339..956
                     /gene="rpsD"
                     /locus_tag="VHN39_07620"
     CDS             339..956
                     /gene="rpsD"
                     /locus_tag="VHN39_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEX2816244.1"
                     /translation="MSKRHSAKYKLDRRMGENIWGRPKSPINKRAYGPGQHGQRRKQK
                     VSDFGLQLRAKQKLKGYYGNLTEKQFSRIYEEAARRKGNTSENLIGLLESRLDAVVYR
                     AKFVPTPFAARQFVNHGHVLVNGKRVNIPSYRVKPEDVVSVRERSRNMALVLEALQSP
                     ERDTPDYIEMDTKGMTARYIRIPELAEVPYPVKMEPNLVIEFYAS"
     gene            1046..1423
                     /locus_tag="VHN39_07625"
     CDS             1046..1423
                     /locus_tag="VHN39_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816245.1"
                     /translation="MNRRLLILAALALGGCATVAAPPVITAVPRALGELEPLYGAQAG
                     RDAVTITVASNGCTAKADFAFYVERRGDAIALAFGRKHVDACKSFAMGKTELVFTWEE
                     LGLAPRAPVFLLNPMSAWTGPGG"
     gene            1484..>1671
                     /locus_tag="VHN39_07630"
     CDS             1484..>1671
                     /locus_tag="VHN39_07630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816246.1"
                     /translation="MKLVLAAVVASMSLSLAHAEVLTPARVFASPDLSGPQARGVALA
                     PDGSAVTYLKANADDVDVT"
BASE COUNT          285 a          558 c          570 g          258 t
ORIGIN      
        1 acccaggcca tgcgggccgc ggccgacaag gccggcgatc cggagctgat gtcgctttgg
       61 gccggtcagg ccgtgaagct ggccaaaccc ggaccggccg gcgagatggt caagctgtgg
      121 tggggagagg cgcaacgggc cgcccaggcg ctggcggcgc ggacggcgga gcgggcgccc
      181 aaaccttgac tccgagaggg gcggtgggca tacacgccgc cttccacgcc acgggcttgc
      241 ctgcggtcgc ggatttatga cgggttgacg cgatagccgc cgttgagatc gcgcttccat
      301 cttcggaagc gccggctcgg gtcgaagaag agaagcatat gtccaagcgc catagcgcca
      361 agtacaaact cgaccgccgg atgggcgaaa acatctgggg tcgcccgaag tccccgatca
      421 acaagcgcgc ctacggcccc ggccagcatg gtcagcgccg caagcagaag gtctccgact
      481 tcggtctgca gctgcgcgcc aagcagaagc tgaagggcta ctacggcaac ctgaccgaaa
      541 agcagttcag ccggatctac gaagaggccg cgcgccgcaa gggcaacacg tcggagaacc
      601 tgatcggcct gctggaaagc cgcctggacg cggtggtcta ccgcgccaag ttcgtgccca
      661 cccccttcgc ggcgcgccag ttcgtcaacc acggccacgt gctggtgaac ggcaagcggg
      721 tgaacatccc gtcctatcgc gtcaagcccg aagacgtggt ctcggtgcgc gagcgttcgc
      781 gcaacatggc cctggtgctt gaagccctgc agtcgccgga acgcgacacg ccggactaca
      841 tcgagatgga cacgaagggc atgaccgccc gctacatccg catcccggag ctggccgaag
      901 tgccgtaccc ggtaaagatg gaacccaacc tcgtcatcga attctacgcg tcctaaccgg
      961 cgccggacct cgaccgacga ttgcgaaggc ccgggatcac tcccgggcct tttgctttgc
     1021 gcgccgctgt ggcggagtgc gcgggatgaa tcgcaggctc ctcattctag ctgcgctcgc
     1081 ccttggcggc tgcgcgaccg tcgccgcgcc gccggtgatc accgcggttc cgcgggcctt
     1141 gggtgagctg gagccgctct atggagcgca ggccgggcgc gacgccgtga ccatcacggt
     1201 ggcgtccaac ggctgcacgg ccaaggcgga cttcgccttc tatgtggagc ggcgcgggga
     1261 cgccatagcg ctggccttcg gacgcaagca cgtcgatgcg tgcaagtcct tcgccatggg
     1321 caagaccgag ctggtcttca catgggagga actgggcctg gcgccccgcg cgccggtctt
     1381 cctgctgaac ccgatgagcg cctggaccgg gcctggcggc tgaggggcct tggcaaggcg
     1441 gtgggtttcc gatgtggtcc gctcgcactt gtctggggat cccatgaaac tcgttctagc
     1501 cgcggtcgtc gcttccatgt cgctcagtct cgcccacgcc gaagtcctga cgcccgcccg
     1561 cgtgttcgcc agtcccgacc tgtccgggcc gcaggcgcgg ggcgtcgcgc tggcgccgga
     1621 cggctcggcg gtgacctatc tgaaggccaa cgccgacgac gtggacgtga c
//
LOCUS       DATAJL010000395         3743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45671,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000395 DATAJL010000000
VERSION     DATAJL010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3743
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45671"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(343..1044)
                     /locus_tag="VHN39_07635"
     CDS             complement(343..1044)
                     /locus_tag="VHN39_07635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816247.1"
                     /translation="MSLRERVLEAVGGARWAEVRHFTGHLLLGGSLLEPLAPGQSLKE
                     IVAECDLANRAIRISGFSDSGAAWGFSPEFVTIQRDDGGFKGARRGAAPRPFTTPKDE
                     EELVYLCGLSIWNCMTAPAGLLGPGAQTEELGDWVEHGETWRRLQVTAPEGVLAYARE
                     ATMYIGDDGLLRRTDFEVQCGQRLQLADYASAHQMFSGLTIPTLHRIVNRAGGAKGVP
                     EPPVLDIEVFDASFD"
     gene            complement(1198..2649)
                     /locus_tag="VHN39_07640"
     CDS             complement(1198..2649)
                     /locus_tag="VHN39_07640"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA];
                     GO_function: GO:0030551 - cyclic nucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEX2816248.1"
                     /translation="MQTSAGPPIMLGLTVVVLALIRTRSAGRRLLVEGVLLLALCGCF
                     AAWTVSPLPSSADLAHRPDAFWLRALAVVWWLMAARVIASLSALLLGRDARSRQARLL
                     SDLVAGAIYLTAGLVVLNSVLGLELKGLIATSGLIAVVLGLASQNTLADMFSGIAVGL
                     DQPFHIGDRVSIGDFAEGVVAQMNWRSIRVQTDNADLAMIPNSLVAKSQIINRSVPTP
                     RRAASVDIPVASPARSEQLLELLRQATLLCPALASDPAPSVTLKRLGLRSTTFSVSYF
                     VATSADLATARSQVLRQARRLFRHAGLGDEAAPAPGALLSGLLLFETLSEDQIARLAA
                     ALASHRLDAGAALFAQGEVGTSIYIVRSGVLEVRRQEGAAARPFGRIGPGEYLGDISM
                     MSGQPHPVSAAALTHCDVLELPRSSLEALLRDDRALGAAMEQSIRRSLDLLDRDDGAR
                     NAQPHEDGASLLDQIGAFLRRRFASPTSAEPRG"
     gene            2963..>3743
                     /gene="cyoA"
                     /locus_tag="VHN39_07645"
     CDS             2963..>3743
                     /gene="cyoA"
                     /locus_tag="VHN39_07645"
                     /inference="COORDINATES: protein motif:HMM:TIGR01433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009486 - cytochrome bo3 ubiquinol oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0015990 - electron transport coupled proton
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol oxidase subunit II"
                     /protein_id="HEX2816249.1"
                     /translation="MTHPAAVLLDPQGPVAAAEETILFNALAIMLVIVVPTILATLLF
                     AWWYRASNTGARYRPAFAYSGRIELVTWSIPILTVIFLGGLTWVGSHKLDPAEPLKST
                     TPAVNVEVVSLDWKWLFIYPDQGVASVNQLVVPAGAPIHLRLTSASVMNTFFVPQLGS
                     MIYTMNGMADDLYLQADRAGVFYGQSAHFSGDGFSDMHFTVQAVAPAQFADWVARTGA
                     GGPVLNQTEYAALSRQSSKVAPYTYRSVSPDLFEDIVRQRLA"
BASE COUNT          612 a         1316 c         1264 g          551 t
ORIGIN      
        1 atcctccttc tggaggtcgg ccgcgcgcat caggtcggcc ttgccgacca cctggccggc
       61 tcgggtgacc agggccgcga ggatgtggaa cgccttgtcg ccgagcggca ccggcgtccc
      121 gtcgcgatcg aggcgccgct cattctggcg caacgcaaaa tcgccgaaca ccagagcgtc
      181 ttcccaatcg gcggggtagc tcgcgggtgc gcgacgatcg ggggtccggc cctttgcgct
      241 tcgaggttcc atgcctacgc gtccacgcct tgcccctacg tcatcctatc cgaacaccgc
      301 ctcgccgcga tcaaaattga acgcgggtcg gcgaacgcgc ccctagtcga agctggcgtc
      361 gaatacctcg atatccagca caggcggctc ggggacgccc ttcgcccctc ctgcgcggtt
      421 cacgatccga tgcaaggtcg gaatggtcag accggaaaac atctggtgcg ccgaggcgta
      481 gtcggcgagc tgcagccgct ggccacattg cacctcgaag tccgtccgcc gaagaaggcc
      541 gtcgtctccg atgtacatgg tggcttcgcg ggcgtaggcg agcacgccct ccggtgcggt
      601 cacctgaagc cgccgccagg tctcgccgtg ctccacccag tccccgagct cttcggtctg
      661 cgcgcccggc ccgagcaagc cggccggggc ggtcatgcag ttccagatgc tcaggccgca
      721 gaggtagacg agttcctcct cgtccttcgg tgtcgtgaac gggcgcggcg ccgccccgcg
      781 gcgcgcgcct ttgaagcccc catcgtcgcg ctggatggtg acgaactcgg ggctaaagcc
      841 ccaggccgcc cccgaatccg agaagccgga gatccgaatg gcgcggttcg ccagatcgca
      901 ctcggcgacg atctccttca gcgattgacc cggcgccagg ggctcgagca gcgaaccgcc
      961 gagcaagagg tggccggtaa agtggcgcac ctcggcccag cgcgcgccgc caaccgcttc
     1021 caacacccgt tcccgcaggg acatgcatgc gatctccgcc gccggcgccg cgcacggcca
     1081 cccgcccttg caacctttac ttgagaccgt ccgtgggaac cttggcggat tctgccctgc
     1141 cttgcacccg cttgccccgc acgcatcccc gccgccgaac ataggtcata gtcacgccta
     1201 gccgcgcggc tcggccgacg tcgggctcgc gaagcgccgc cgcaggaagg cgccgatctg
     1261 gtcgagcagg gacgcgccgt cttcgtgggg ttgggcgttg cgcgcaccgt cgtcgcgatc
     1321 gagcaggtcg aggctgcggc ggatcgattg ttccatggcc gcgccaaggg cgcggtcgtc
     1381 gcgcagcagc gcttcaagcg aagaacgcgg gagttccagg acgtcgcaat gggtcagggc
     1441 ggcggcggac acaggatgcg gttggccgct catcatgctg atgtccccga ggtattcgcc
     1501 ggggccgatg cgtccgaagg ggcgcgcggc ggcgccctcc tgccggcgga cctccaggac
     1561 gcccgagcgc acaatgtaga tcgaggtccc gacctctccc tgggcgaaca gcgcggcgcc
     1621 cgcgtccagg cggtgggacg ccagcgcggc cgccagccgg gcaatctgat cctcgctcag
     1681 ggtctcgaac agcaggagtc ccgacagcaa ggcgcccggc gcaggcgcgg cctcgtcacc
     1741 aaggccggcg tgacggaaca gccggcgcgc ctggcgaagc acctggctgc gcgccgttgc
     1801 aaggtccgcc gaggtggcga caaagtagct gacggaaaag gtggtcgagc gcagccccag
     1861 gcgcttcagg gtcacggacg gcgccgggtc cgacgccagg gccggacaaa gcagcgtcgc
     1921 ttgccgcagg agctccaaca gttgttccga gcgcgcaggt gaggcgaccg gaatgtcgac
     1981 cgacgcggcg cggcgcgggg tcggcacgct gcgattgatg atctggctct tggcgacgag
     2041 gctgttgggg atcatcgcca ggtcggcgtt gtctgtctgc acccggatcg agcgccagtt
     2101 catctgagcc accacgccct cggcgaaatc gccgatcgag acccggtcgc cgatgtggaa
     2161 gggttggtcg agccctacag cgatgccgga gaacatgtct gccaaggtgt tttgggatgc
     2221 gaggcccagg acgacggcga tcaggcccga ggtggcgatc aggcctttca gctccaggcc
     2281 gagcacggag ttcagcacca cgaggccggc ggtcagatag attgccccgg ccaccagatc
     2341 ggacagcagg cgcgcctggc gcgagcgggc gtcgcgtccg agcagaagcg ccgacagcga
     2401 ggcgatgacc cgcgccgcca tcagccacca gaccacggcg agggcccgca gccagaaggc
     2461 gtcaggccgg tgtgcgaggt cggcgctgga tggcaggggc gagacggtcc aggcggcgaa
     2521 gcagccacaa agggccagca gcagcacgcc ctccacgagt agccggcggc cggcggagcg
     2581 cgtgcggatc agcgccagga ccacgaccgt caggcctagc atgatcggcg gtcctgcgga
     2641 cgtctgcatc atgctcctcg tcggcgcagc gggcggaccg ccgcctgcgg aagggtccga
     2701 gcacggcgat cttgttgcgg gccgccgcgg cggcgcaaga gcgcaaaccc gctcgggcgc
     2761 ggcgaggcgc aagaactcgc caaggggggc aaccggatac aagacagtcc cgccggggca
     2821 cccctaacac tccacctgtc aggcgcgagg tcgagcgcag aggcgagcta tttcggccgc
     2881 gccgcattgc agatggccct cggatgaatc gcgacctctc gaccgtcacg tcccgcatcc
     2941 accgccattc cggggaccgg ccatgaccca tcccgccgcc gtgctgctag acccgcaggg
     3001 accggtcgcc gccgctgaag agaccatcct cttcaacgcg ctggcgatca tgctggtgat
     3061 cgtcgtgccg acgatcctgg cgaccctgct gttcgcctgg tggtatcggg cctccaacac
     3121 cggcgctcgt tatcggcctg ccttcgccta ctcgggccgc atcgagctgg tgacctggtc
     3181 gatccccatc ctgaccgtca tcttcctggg cggcctcacc tgggtgggct cgcacaagct
     3241 cgatcccgcc gaaccgctga agagcacgac accggcggtg aacgtcgagg tcgtctcgct
     3301 ggattggaag tggctgttca tctacccgga tcagggggtg gccagcgtca accaactggt
     3361 cgttccggcc ggcgcgccga tccatcttcg gctcacctcc gccagcgtga tgaacacctt
     3421 cttcgtgccc caactgggct cgatgatcta cacgatgaac ggcatggccg acgacctgta
     3481 cctgcaggcc gatcgggcgg gcgtcttcta cggccagtcg gcccatttca gcggcgacgg
     3541 cttctccgac atgcacttca ccgtgcaggc cgtggcgccc gcgcagttcg ccgactgggt
     3601 cgcccggacc ggcgccggcg gcccggtgct caaccagacg gaatacgccg cgctcagccg
     3661 ccagagcagc aaggtcgcgc cctataccta ccgcagcgtc tcgcccgacc tcttcgagga
     3721 catcgtccgc cagcgcctgg cgc
//
LOCUS       DATAJL010000396         1570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_7112,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000396 DATAJL010000000
VERSION     DATAJL010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7112"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..850)
                     /locus_tag="VHN39_07650"
     CDS             complement(20..850)
                     /locus_tag="VHN39_07650"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816250.1"
                     /translation="MLTRSALNLTLAPGLLALGMLAGPATAGEIPGALVLAPVSVNGD
                     VAISLADYAVTLTAPGTKYLTPPIFVPDGPGFATPACTAQGFCNYGTGEISATLGIDP
                     TILLSASPANNGGGDSSLEMTYQVYYGSSDPAGTVVHPPVLVSDKLDVTGDSAAEAFM
                     VISGVNGIIYDSTDCQSGPGAAFGCRPGDAPLADQTLNMVVNTLYTVDMFVRIYAHDP
                     VSATIDPIFVNPPNGTGEFFFSPGIGGVPEPAAWTLMIGGFGLVGAALRRRRFAVAAA
                     "
     gene            1046..>1570
                     /locus_tag="VHN39_07655"
     CDS             1046..>1570
                     /locus_tag="VHN39_07655"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2816251.1"
                     /translation="MALGAGGGAFAATERPEGSPGMDAATREGVYYGFGPFVLDPTRR
                     VLTRDGAAVSLFPTVFETLLYLVEHPGRVVSRDELMDAIWPRRVVEDANISQTIFTLR
                     KALTEAGARETYVATQPGQGYRFVQPVRTLTGAPAPFQRFRPDADAPGHAGAPWRRTW
                     AAAAGLVLLACAGLG"
BASE COUNT          237 a          519 c          562 g          252 t
ORIGIN      
        1 cagactccgc ctcgcgggct caggcagcgg ctacggcgaa ccggcggcga cgcaatgctg
       61 cgccgacgag gccaaaacca ccgatcatca gggtccatgc cgccggctcc ggcaccccgc
      121 cgatcccggg gctgaagaag aactcgcccg tgccgttcgg cggattgacg aagatggggt
      181 cgatggtcgc cgacacagga tcgtgggcat agattcggac gaacatatcg accgtgtaga
      241 gcgtgttgac gaccatgttc agcgtctggt cggccagcgg ggcgtctccg ggcctgcagc
      301 cgaaggcggc gcccgggccc gactggcagt ccgtgctgtc gtagatgatg ccgttgacgc
      361 cgctgatgac catgaaggcc tctgcggcgc tgtctccggt tacgtcgagc ttgtcgctga
      421 ccagcacggg aggatggacc accgttcccg ccgggtcact gctcccgtag tacacctggt
      481 aggtcatctc gagtgagctg tcgccgccgc cgttgttggc agggctggcg ctgagcagga
      541 tggtcggatc gatccccaga gtggcggaga tctcgccggt cccgtagttg cagaagcctt
      601 gcgccgtaca ggccggcgtt gcgaagcccg ggccatcggg aacgaagatc ggcggcgtca
      661 ggtacttcgt gccgggcgcg gtcagggtca cggcgtagtc cgccaggctg atcgcgacgt
      721 cgccgttgac agacaccggg gcgagcacca gggcgccggg aatctcgccg gcggtcgcgg
      781 gccccgccag cattccgagc gctaagaggc ccggcgcgag ggtcaagttc aaagccgatc
      841 tggtgagcat ccttaatctc ctgtgcaacg cgtcggccgc gctccctcgg tccacgcgtc
      901 cggtgcaggg tcgagccgac agggccaagt ttggggctcg agcttccggc gtggcttcaa
      961 agcggggctc aaaatttctc aaaatccgcc gcgagccggg gattcgcgcg tcacgcgaga
     1021 gccaggacgg ccgcggcggt ctatagtggc gctgggcgct ggaggcgggg ccttcgccgc
     1081 gaccgagcgc ccggagggct cgcccggcat ggatgcggcg acacgcgagg gcgtctacta
     1141 cggcttcggg ccgttcgtcc tggacccgac gcgccgcgtt cttacccgcg acggcgccgc
     1201 ggtgtcactg ttcccgaccg ttttcgagac cctgctgtat ctggttgagc atccggggcg
     1261 cgtggtgtcc cgtgacgaac tgatggacgc gatctggccg cgccgggtcg tcgaagacgc
     1321 caacatcagc cagacaatct tcaccctgcg caaggctctg acggaagcgg gcgcgcgcga
     1381 gacctatgtc gccactcagc ccggccaggg ctaccgcttc gttcagccgg tgaggacgct
     1441 caccggcgcg ccggcgccct tccagcggtt ccggccggac gcagatgcgc cgggccatgc
     1501 gggggcgccc tggcggcgaa cctgggcggc cgccgccggt ttggtcctgc tggcctgcgc
     1561 gggcctgggc
//
LOCUS       DATAJL010000397         7363 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57441,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000397 DATAJL010000000
VERSION     DATAJL010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7363
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57441"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..259)
                     /locus_tag="VHN39_07660"
     CDS             complement(<1..259)
                     /locus_tag="VHN39_07660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816252.1"
                     /translation="MPTETPERTALMRAAEHAFAWLDGLDGRPVATTASLEEMRARLG
                     RPMADKGIAATEVIDDLVADVEGGILGSQNGRFFSWVIGGAH"
     gene            408..821
                     /locus_tag="VHN39_07665"
     CDS             408..821
                     /locus_tag="VHN39_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HEX2816253.1"
                     /translation="MAYWLVKSEPNKYAFSDLQRDGKTVWDGVRNNAAALHLKAMKLG
                     DEVLYYHSQEGLEVVGVAKVVKESFLDPSDPAGRFVAVELAPVRALAKSVSLQAMKAN
                     PALAALEMIRQGRLSVSPVRPAEWTAILKMAGEAG"
     gene            complement(840..1313)
                     /locus_tag="VHN39_07670"
     CDS             complement(840..1313)
                     /locus_tag="VHN39_07670"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2816254.1"
                     /translation="MKFAILSIACVAALSASSAMAAGDAALEAPIHTFIDDFNKGDAA
                     GAAATFLPSVSIIDEVPPHIWTGSKAFATWAADLTKNDMAKGISKEAVELGAVKREVV
                     SGKTAYVIIAATYSFEQNGKAMHEVSQMTYAMRKTADGWKIAGWTWTGPNATPVK"
     gene            complement(1386..1772)
                     /locus_tag="VHN39_07675"
     CDS             complement(1386..1772)
                     /locus_tag="VHN39_07675"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX2816255.1"
                     /translation="MTNTGMPFSNLMGVEIVEREKTRVVGKMVVREDLCTSGGILHGG
                     AYMAFADALGAIGGVLNLEPGTHTTTLESKTNFLRGAPVGSTVTGEATPLHIGRRSSV
                     WTTRITNDDGKLLAIVTQTQMTIAAG"
     gene            complement(1779..3038)
                     /locus_tag="VHN39_07680"
     CDS             complement(1779..3038)
                     /locus_tag="VHN39_07680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012274974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2816256.1"
                     /translation="MADGAMRLAGEARERAYSMPLDEMHPGDPELFRTNTHWPYFERL
                     RAEAPVHYCTEGEFGPYWSITRYADIMAVDINHQVFSSDAALGGITIRDARPDLRRPS
                     FIAMDPPLHDAQRKVVSPIVAPANLARMEGIIRERAARILDDLPIGETFDWVDKVSIE
                     LTTQMLATLFDFPFEERRKLTRWSDIATALPIPGGIVETEEERQAELMECLAYFTDLW
                     NQRIKAEPAGDLISMMAHSEVTRDMTPEAYLGNIILLIVGGNDTTRNSLSGGVLALNE
                     NPEEYVKLAANHGLLDSMVPEIVRWQTPLAHMRRTAREDIEVGGKTIRKGDKVVMWYV
                     SGNRDPEAIEDPDRLIIDRARPRQHLSFGFGIHRCVGNRLAEMQLRIVWEEILKRWSR
                     IEVVGEPVRVRSSFVKGYEHLPVQIVA"
     gene            3271..4302
                     /locus_tag="VHN39_07685"
     CDS             3271..4302
                     /locus_tag="VHN39_07685"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEX2816257.1"
                     /translation="MGYRVAVVGATGNVGREMLNILEEVSFPVDKIHAIASRKSIGVE
                     VSFGDQIVRCEDIAQFDFGRVDIVLMSVSGAFSKEWAPKIAAAGPIVIDNSSAWRMDP
                     DVPLIVPEVNPDDAEWASRKNIIANPNCSTVQLVVALKPLHDRARIKRVVVSTYQSVS
                     GAGKEGMDELFDQTKNVFVLGATPPNKFPKQIAFNVIPYCGSFEDDGYTDEEHKMWRE
                     THKMLDPDIALTVTCVRVPVMVGHSEAVNIEFHEPLDEDEARDILRESPGVIVIDKRD
                     STGYMTPKEAQGEFAVYVSRIRNDPTIANGLNMWVVSDNLRKGAALNAVQIAELLHAR
                     GLIRQKALA"
     gene            4307..5230
                     /gene="rarD"
                     /locus_tag="VHN39_07690"
     CDS             4307..5230
                     /gene="rarD"
                     /locus_tag="VHN39_07690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008262675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HEX2816258.1"
                     /translation="MTRPAPGGESRPALAAALVCYFIWGIVPLVFQAMGHLGISPWEI
                     LANRTVWAVPVALVFVLMARQGAEVLAAFRNPRTLAWLALSSLLIAANWSIYIWAVNS
                     GRVLETALGYYINPLIGMAAGALLFQERISRLGFLAIGLAALGVLVQAVAIGGLPIVS
                     LALAVSFGGYGIVRKRVAASAQTGLLIECLLLAGFGLAYVVWLQSKGVGHLGASVPAT
                     AWLLSCGLWTAVPLVLFAWAARRIPLSSLAFLQFIGPTTGFIIGVAQGEAFTPLRAAS
                     FAFIWSGAAVFAYGAWRRTRTLRLVAAGPGD"
     gene            complement(5227..6351)
                     /locus_tag="VHN39_07695"
     CDS             complement(5227..6351)
                     /locus_tag="VHN39_07695"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2816259.1"
                     /translation="MVEIAGLAPTRFAGVKDAFAASFAAGEELGARFTLVEAGETVLD
                     LWGGFVDRARSKPFDDQTLAPIFSTTKAIAALLIARLVDAGKLDYAQTVASVWPEFAQ
                     AGKAAITVEQVMSHQAGLSGFPDPMEPALWFDWDAICAKLAAMAPLWPPGTASGYHPI
                     TFGYLAGEIFKRIDGRSMATALREDLAAPFGLDLFIGLPDEESPRIADLQRPSALPNF
                     GHINPATKAAFLTPWSQPGGRGPDALRRFELPSATGHASALALARLMGALANDGWLDG
                     EDILSPALIAEAARQRIRGQDLVLPFEISWGAGFMRNETIHPWGPGNQTFGHAGWGGS
                     CAFADPERRLGGAYVMNKQSTDLIGDRRPRRLIEAAYAAL"
     gene            6473..>7363
                     /locus_tag="VHN39_07700"
     CDS             6473..>7363
                     /locus_tag="VHN39_07700"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816260.1"
                     /translation="MTTVPGTVAAPPRPASNVVLIVAFCFVAAMCEGLDVQAAGIAAG
                     GIKHDLAPTPGQLGLFFAAANFGLLFGAVFGGRLSDRVGRKLVLTASIGVFGVCSILT
                     ALAWDMTSLTAARLLTGLGLGGAMPNLIAMVADASHVKSRNAVIALTYVGMPLGGAVA
                     SVVVLGLPPGHWRGLFLIGGVAPLLIAPLMAFLLPNPRPARTAAAEGEPVGEPGRIAE
                     VFAGGRLARTLTLWLGFFVAALTLHLLLSWLPLLLQGRGLSKNDAAIAQFAFNAGGAA
                     AALVAGLGLDTRWRPASIVFS"
BASE COUNT         1068 a         2490 c         2563 g         1242 t
ORIGIN      
        1 gatgcgcgcc gccgatcacc cagctgaaga accgtccgtt ctgcgagccc aggatgccgc
       61 cctcgacgtc ggccaccagg tcgtcgatca cctcagtcgc cgctatgccc ttgtcggcca
      121 tgggacggcc cagtcgcgcg cgcatctcct ccagcgaggc ggtcgtcgcg acggggcggc
      181 cgtccaggcc gtcgagccag gcgaaggcgt gctcggcggc gcgcatcagg gcggtgcgct
      241 cgggtgtctc ggttggcatg acgtccctcc agccgccgga gatgggcggc ggcgcgcgcg
      301 gcgtcaaccg gggtgatcgc gacaaacgga cggggcgttc cgccttgcca aaccggcgcg
      361 ccgcatgatc ccctcgcgcc tcgaacaagc ggcggcggga gcattcgatg gcctattggc
      421 tggtgaagtc ggagcccaac aaatacgcgt tctccgacct gcagagggac ggcaagaccg
      481 tctgggacgg cgtgcgcaac aatgccgccg ccctgcacct gaaggccatg aagctgggcg
      541 acgaggtgct ctattaccac tcccaggagg gactggaggt ggtgggcgtg gccaaggtcg
      601 tgaaggagtc gttcctcgac ccctccgatc ccgccggccg gttcgtggcg gtggagctgg
      661 cgccggtgcg ggcgctcgca aagtccgtca gcctgcaggc gatgaaggcc aacccagcgc
      721 tcgccgccct ggaaatgatc cgccagggcc gcctgtcggt atccccggtc aggccggcgg
      781 aatggacggc gatcctgaag atggcgggag aggccggata gcccctccca gcgggccggc
      841 tatttcaccg gcgtcgcgtt cgggccggtc caggtccagc cggcgatctt ccagccgtcc
      901 gcggtcttcc tcatggcgta ggtcatctgg gacacttcgt gcatggcctt gccgttctgc
      961 tcgaagctgt aggtggcggc gatgatcaca taggcggtct tgcccgagac gacctcgcgc
     1021 ttcacggcgc cgagctcgac ggcttccttt gaaatgccct tcgccatgtc gttcttcgtc
     1081 aggtcggcgg cccaggtcgc gaaggctttg gaccccgtcc agatgtgcgg cggaacctcg
     1141 tcgatgatcg agaccgaggg caggaacgtg gccgcggcgc cggcggcgtc gcccttgttg
     1201 aagtcgtcga tgaaggtgtg gatcggcgcc tcaagcgctg cgtcgcccgc ggccatggcc
     1261 gaagatgccg agagcgccgc cacacaggcg atgctgagaa ttgcgaattt catgagttcc
     1321 tcccccggcc ccggatttga ggcgtggagc tagtatatca ccgttcttcg acggccgttg
     1381 agtccctagc cggccgcgat ggtcatctgg gtctgggtga cgatcgccag cagcttgccg
     1441 tcgtcgttgg tgatccgcgt cgtccagacg ctggagcggc ggccgatgtg gagcggcgtg
     1501 gcctcgccgg tcaccgtcga gcccaccggc gcgccgcgca ggaagttggt cttgctctcc
     1561 agcgtcgtgg tgtgggttcc gggctcaagg ttcagcaccc cgccgatggc gcccagggcg
     1621 tcagcgaagg ccatgtaggc cccgccgtgc aggatgccac cggaggtgca gaggtcctcg
     1681 cgcaccacca tcttgccgac cacgcgggtc ttctcgcgct cgacgatctc cacgcccatc
     1741 aggttgctga agggcattcc ggtgttggtc atgggggatc aggcgacgat ctggacgggc
     1801 aggtgctcgt agcccttcac gaaggaggag cgcacccgca ccggctcgcc gaccacctcg
     1861 atccggctcc aacgcttgag gatctcttcc cagacgatcc taagctgcat ctcggccaag
     1921 cggttgccga cgcagcggtg gatgccgaag ccgaacgaca ggtgctggcg cggccgcgcg
     1981 cggtcgatga tcagccggtc cgggtcctcg atggcctcgg ggtcccgatt gcccgagacg
     2041 taccacataa ccaccttgtc gcccttcctg atggtcttgc cgccgacctc gatgtcctcg
     2101 cgggcggtgc ggcgcatgtg ggcgagcggg gtctgccagc ggacgatctc cggcaccatg
     2161 gagtccagca gcccgtggtt ggcggcgagc ttgacgtact cttcggggtt ctcgttcagc
     2221 gccagcaccc cgccgctcag ggagttgcgg gtggtgtcgt tgccgccgac gatcaagagg
     2281 atgatgttgc cgagataggc ctcgggcgtc atgtcgcgag tgacctcgga gtgggccatc
     2341 atcgagatca ggtcgccggc cggctcggcc ttgatccgct ggttccagag gtcggtgaaa
     2401 taggccaggc actccatcag ctcggcctgg cgttcctcct cggtctcgac gatgccgccc
     2461 gggatcggca gggcggtggc gatgtcggac cagcgggtca gcttgcgccg ctcctcgaag
     2521 gggaagtcga acagggtggc cagcatctgg gtggtcagtt cgatggagac cttgtcgacc
     2581 caatcgaagg tttcgccgat gggcaggtcg tcgaggatcc tggccgcccg ctcgcggatg
     2641 atgccttcca tgcgcgcgag attggccggc gccacgatgg ggctgaccac cttgcgctgg
     2701 gcgtcgtgca gcggcggatc catggcgatg aagctggggc ggcgcaggtc cggccgggcg
     2761 tcgcggatgg tgatcccgcc caacgccgcg tccgaagaga acacctggtg gttgatgtcg
     2821 accgccatga tgtcggcgta gcgggtgatc gaccagtagg gcccgaattc accctcagtg
     2881 cagtagtgca ccggcgcctc ggcgcgcagc cgctcgaaat agggccagtg ggtgttggtg
     2941 cggaacagct ccggatcgcc cggatgcatc tcatccagcg gcatcgaata ggcccgctcg
     3001 cgcgcctcgc cggccagtct catcgcgccg tcggccatga tcgctccctc gcgcgccttc
     3061 ggggcgcgtc ttcaagatgc tgcaggaaac tccaatccgc ggcgcgggac aacgcaagat
     3121 cggtcagccc ccggttgcgc cggagcttca caaccgccat ctacgccgcc tcagggtggg
     3181 ccgagctgat gggtctgtca gaaccgctta tcttgcctag gcgcgcccca aggggtaggg
     3241 gacgctccct caagacttag gagaagtgcg atgggttacc gggtggccgt cgtcggcgcc
     3301 acgggcaacg tgggccgtga aatgttgaac atcctcgagg aagtgagctt ccccgtggac
     3361 aagattcacg cgatcgcgtc gcgcaaatcc atcggcgtgg aggtctcctt cggcgaccag
     3421 atcgtccgct gcgaggacat cgcgcagttc gatttcggcc gcgtcgacat cgtgctgatg
     3481 agcgtttcgg gcgcgttctc caaggaatgg gcgccgaaga tcgccgcggc cggcccgatc
     3541 gtcatcgaca actcgtcggc ctggcgcatg gaccctgatg tcccgctgat cgtgccggaa
     3601 gtgaacccgg acgacgcgga gtgggcgagc cgcaagaaca tcatcgccaa cccgaactgc
     3661 tcgaccgtcc agctggtggt ggcgctgaag cccctgcacg accgcgcgcg gatcaagcgg
     3721 gtcgtggtct cgacctacca gtcggtgtcc ggcgccggta aggaaggcat ggacgaactg
     3781 ttcgaccaga cgaagaacgt cttcgtcctg ggcgccacgc cgcccaacaa gttccccaag
     3841 cagatcgcct tcaacgtgat cccctactgc gggtccttcg aggacgacgg ctacaccgac
     3901 gaagagcaca agatgtggcg cgagacccac aagatgctcg atccggacat cgcacttacg
     3961 gtgacctgcg tgcgcgtgcc ggtgatggtc ggccactccg aggccgtgaa catcgagttc
     4021 cacgaaccgc tcgacgagga cgaggcgcgc gacatcctgc gcgagagccc cggcgtgatc
     4081 gtcatcgata agcgggattc caccggctac atgacgccga aagaggccca gggcgagttc
     4141 gcggtctacg tgagccgtat ccgcaacgac ccgaccatcg ccaacggtct gaacatgtgg
     4201 gtggtgtcgg acaatctgcg aaaaggcgcg gcgctcaacg ccgtgcagat tgcagagctc
     4261 ctccacgcgc gcggcctgat ccgccaaaaa gctctcgcct gacgccatga cccgcccggc
     4321 gccgggcggc gaatcccgcc cggcgctagc cgcggcgctc gtctgctact tcatctgggg
     4381 gatcgtgccc ctggtgttcc aggccatggg acacttaggg atttccccgt gggagatcct
     4441 cgccaaccgc accgtctggg cggtcccggt ggcgctggtc tttgtcctta tggcgcgcca
     4501 gggcgcggaa gtcctggccg ccttccgcaa tccgcggacg ctggcctggc tggcgctgtc
     4561 gtccctgctg atcgccgcca actggtcgat ctacatctgg gcggtgaact ccggccgggt
     4621 tctggagacg gcgctcggct actacatcaa cccgctgatc ggcatggccg ccggcgcgct
     4681 gctcttccag gagcggatca gccgcctcgg ctttctggcc atcgggctgg cggcgctggg
     4741 tgttttggtg caggcggtcg ctataggcgg cctgccgatc gtctccctgg cgctcgcggt
     4801 cagcttcggc ggctacggga tcgtgcgcaa gcgggtggcg gcctcggcgc agacggggct
     4861 gctgatcgaa tgcctgctct tggccggctt cgggctggcc tacgtggtct ggttgcagtc
     4921 caagggcgta ggtcacctgg gcgccagcgt cccggccacc gcctggctgc tctcctgcgg
     4981 tctctggacc gcggtgccgc tggtgctgtt cgcctgggcg gcgcggcgca tcccgctgtc
     5041 gtcgctggcc ttcctgcagt tcatcgggcc gaccaccggc ttcatcatcg gcgtggccca
     5101 gggcgaggcc ttcaccccgc tgcgcgcggc ctccttcgcc ttcatctgga gcggggccgc
     5161 ggtcttcgcc tatggcgcgt ggcggcgaac ccggaccctc cggctggtcg cggcgggccc
     5221 cggcgactag agcgccgcgt acgccgcctc gatcagccgc cggggccgtc gatccccgat
     5281 gaggtcggtg gactgcttgt tcatgacgta ggccccgccc agcctgcgct ccggatcggc
     5341 gaaggcgcag gagccgcccc agccggcgtg gccgaaggtc tggttccccg ggccccaggg
     5401 gtggatggtt tcgttgcgca tgaagcccgc gccccagctg atctcgaagg gcagcaccag
     5461 gtcctggccg cggatacgct gacgggccgc ctcggcgatc agggccggcg acaggatgtc
     5521 ctcgccgtcc agccagccgt cgttggcgag cgcccccatc agccgggcga gcgccagggc
     5581 gcttgcatgg ccggtggccg agggcagctc gaaccgccgc agcgcgtccg ggccgcgtcc
     5641 gccgggctgg gaccagggcg tcaggaaagc cgccttcgtg gccggattga tgtggccgaa
     5701 gttcggaagc gcgctcggac gctgcaggtc ggcgatgcgg ggcgattctt cgtccggcag
     5761 gccgatgaag aggtcgaggc cgaaaggcgc ggccaggtct tcgcgcagcg ccgtcgccat
     5821 gctgcgcccg tcgatgcgtt tgaagatctc gccggccagg tagccgaagg tgatcgggtg
     5881 atagccgctg gccgtgcccg gcggccagag cggggccatg gccgcgagct tggcgcagat
     5941 cgcgtcccag tcgaaccaca gggccggctc catcggatcg ggaaagccgg agagcccggc
     6001 ctgatgcgac atcacctgct cgacggtgat ggcggccttg ccggcctggg cgaactcggg
     6061 ccagaccgag gccacggtct gggcgtagtc gagctttccc gcgtccacca gccgggcgat
     6121 cagcagggcg gcgatcgcct tggtcgtgga gaagatcggg gccagcgtct ggtcgtcgaa
     6181 gggcttgctg cgggcgcggt cgacgaagcc gccccagagg tccagcaccg tctcgccggc
     6241 ctccaccagg gtgaagcggg cgcccagctc ctcgccggcc gcgaagctgg cggcgaaggc
     6301 gtccttcacg cccgcgaacc gggtgggggc gaggcccgcg atctcgacca tcaaggactc
     6361 cagggaaccg ccacgcccta taccccgtcc gccgccgtcc gccaggggtt cccatcgcgc
     6421 tggcgcccag ggtgacgcgt ggctaagctt cgcccatgag aggccgcccc gcatgacgac
     6481 cgtccccgga acggtggccg ctccgcctcg accggcctcc aacgtggttt tgatcgtggc
     6541 cttctgtttc gtcgcggcca tgtgcgaggg cctcgatgtg caggccgcgg gcatcgcggc
     6601 cggcggcatc aagcacgacc tggcgccgac accaggccag ctgggcctgt tcttcgcggc
     6661 ggcgaatttc gggctgctgt tcggcgcggt gttcggcggg cggctctccg atcgtgtcgg
     6721 ccgcaagctg gtgctgaccg cctccatcgg cgtcttcgga gtctgttcga tcctgacggc
     6781 gctcgcctgg gacatgacct cactgacggc ggcccgcctg ctgaccggcc tcggcctcgg
     6841 cggcgccatg cccaacctga tcgccatggt cgccgacgcc agccacgtca aatcgcgcaa
     6901 cgcggtcatc gcgctgacct acgtcggcat gcccttgggc ggggcggtcg ccagcgtggt
     6961 ggtcctggga ctgccgccag gccattggcg agggctgttc ctgatcggcg gcgtcgcgcc
     7021 cttgctcatc gcccctttga tggcgttcct gctgcccaac ccccggccgg cccgcaccgc
     7081 cgcggcggag ggggagccag ttggggagcc cggccgcatc gccgaggtgt tcgccggcgg
     7141 gcggctcgcg cggacactca ccctgtggct gggcttcttt gtcgcggcgc tcaccctgca
     7201 tctgctgctg agctggctgc cactcctgct gcagggccgc ggcctgtcga agaacgacgc
     7261 cgccatcgcc cagttcgcct tcaacgccgg gggcgccgcg gcggccctgg tcgccggcct
     7321 cggcctcgac acccgctggc gcccggccag catcgtcttc agc
//
LOCUS       DATAJL010000398         3086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_118953,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000398 DATAJL010000000
VERSION     DATAJL010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118953"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1646
                     /locus_tag="VHN39_07705"
     CDS             <1..1646
                     /locus_tag="VHN39_07705"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEX2816261.1"
                     /translation="ISALVDITNLMSYDRCRPLHVYDAGKLTGGFIEARLGREGESLE
                     ALDGKTYAITPDVCVIADGSGAVGLGGVMGGESTKVSETTTDVFVESAYFNPIRTAQT
                     GRTLGLSSDAQYRFARGVDTAFVVPGLEMATRLILDLCGGEPCEVRVAGHAPAPPAAF
                     EFDHAYVKKLSGLDVPGARIDAILTALGFEVRGEMVTPPTWRRDVDGKADLVEEVARI
                     EGFGALPSTALPEMPRAVGGVLTVRQTRIRNARRAMATRGYAEAVTWSFMSTAGAKLF
                     GGGDERLRLSNPIASDLDCMRPSILPNLIEAAARNARQGFPDAAVFEVGPTFKGDRPE
                     DQLTIVAALVAPHPARSWSGAAGDPLFALKADLMALLDEMGAPGLQIVQGQASPWWHP
                     GRSARLRLGPKNVIAEFGELHPRVLKDLDAEGPMLAFELDLGAIPEPKKKPTKTKPAL
                     SLSPLMPLTRDFAFLVDQATPAGEVVRPILAADKALIADARVFDVYQGKGVPQGQKSV
                     AVEVTVQPTEKTLTDAEIEALSARVVAAAEKAVGAKLRS"
     gene            complement(1630..2484)
                     /locus_tag="VHN39_07710"
     CDS             complement(1630..2484)
                     /locus_tag="VHN39_07710"
                     /inference="COORDINATES: protein motif:HMM:NF016041.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sterol desaturase family protein"
                     /protein_id="HEX2816262.1"
                     /translation="MTPHLTEVAGRIAQPFMGVLTPMIACALAFAALAWLTKGWRGAI
                     AGARAAAGETRINAVMAAVDALAVGPILAIGTAAVVGALTSHGLQLDSSHLWAWMGRW
                     PTVAAAVVLGDFFGYWRHRVQHGRWLWPAHAVHHSDTQLTWLSLERMHPIDRIGSLAD
                     MVILSALGFPVWALAANALVRHYWGYLIHADLPWTLGKASWVINSPAMHRWHHVRDVE
                     GSGYNFATVFSVWDRAFGTYYQPGPCTAPLGVTEEMGQGALGQYAHPLEVWWRAIRPR
                     PLRINSEA"
     gene            2668..>3086
                     /locus_tag="VHN39_07715"
     CDS             2668..>3086
                     /locus_tag="VHN39_07715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816263.1"
                     /translation="MTATTSSGPRARQFGKVGLLAALALACVAVTMIGAERIWLALAQ
                     PLWFDEAWTTAVAATPDWASFLGLIRNDINAPLYSVLMRLWTDVAGSSDIALRAPGLA
                     ALAAAAAIPIFVRVPGLKLDARLAWGVMIFAWWGVGI"
BASE COUNT          465 a         1077 c         1095 g          449 t
ORIGIN      
        1 cgatcagcgc gctggtcgat atcaccaact tgatgtccta cgaccgctgc cggccgctgc
       61 acgtctatga cgcgggcaag ctcaccggcg gcttcatcga ggcccgcctc ggccgcgagg
      121 gcgagagcct tgaggccctg gacggcaaga cctatgcaat cacgcctgac gtctgcgtca
      181 tcgccgacgg ctccggcgcc gtgggcctgg gcggggtcat gggcggagag agcaccaagg
      241 tcagcgagac caccaccgac gtcttcgtgg aaagcgccta cttcaacccg atccgcaccg
      301 cccagaccgg acggacgcta gggctcagct ccgacgccca gtaccgcttc gcgcgcgggg
      361 tcgacacggc cttcgtggtc cccggcctgg agatggcgac gcggctgatc ctggacctct
      421 gtggcggcga gccctgcgag gttcgggtcg cgggccatgc gccggcgccg ccggcggcct
      481 tcgagttcga ccatgcctac gtcaagaagc tgtcgggcct ggacgtcccg ggcgctcgga
      541 tcgacgccat cctgaccgcc ctcggtttcg aggtgcgtgg cgagatggtc acgccgccca
      601 cctggcgtcg cgacgtcgac ggcaaggccg atctcgtgga ggaagtggcc cgcatcgagg
      661 gcttcggcgc cctgccctcg accgccctgc cggagatgcc tcgcgcggtc ggcggcgtgc
      721 tcaccgtgcg ccagacccgc atccgcaacg cccggcgcgc catggccacg cgcggatatg
      781 cggaagccgt gacctggagc ttcatgtcta cggccggggc gaagctgttc ggcggcgggg
      841 acgagagact gcggctttcc aatccgatcg cctcggacct cgactgcatg cggccgtcga
      901 tcctgccgaa cctgatcgag gcggcggccc gcaacgcccg ccagggcttt cccgacgcgg
      961 cggtcttcga ggtcggcccg accttcaagg gcgaccggcc ggaggaccag ctgaccatcg
     1021 tggccgccct ggtggcgccg catccggccc gcagttggag cggggcggcg ggcgatccgc
     1081 tgttcgcgct taaggccgac ctgatggcgc tgctcgacga gatgggcgcg ccgggcctgc
     1141 agatcgtcca gggccaggcc tcgccctggt ggcatcccgg ccgttccgcc cgcctgcggc
     1201 tcggtccgaa gaacgtaatc gccgagttcg gcgaactgca tccgcgcgtc ttgaaggacc
     1261 tcgacgccga ggggcccatg ctggccttcg agctcgacct gggggcgatc ccggagccga
     1321 agaagaagcc caccaagacc aagccggcgc tgtcgctttc gccgctgatg ccgctcaccc
     1381 gcgacttcgc cttcctggtg gatcaagcca cgcccgccgg cgaggtggtc cggccgatcc
     1441 tggccgcgga caaggcgttg atcgctgacg cgcgggtgtt cgacgtctac cagggcaagg
     1501 gtgtgccgca ggggcagaaa tcggtcgcgg tcgaggtgac ggtgcagccc accgaaaaga
     1561 ccctgaccga cgccgagatc gaggcgctgt cagcgcgcgt ggtggccgcc gccgagaagg
     1621 ccgtgggggc taagcttcgg agttgatccg aagcggccgg ggccggatcg cccgccacca
     1681 gacctcaagc gggtgggcgt attggccgag cgcgccttgg cccatctcct cggtcacgcc
     1741 caggggcgcc gtgcagggac ccggctggta gtaggtgccg aaagcgcggt cccagaccga
     1801 gaacaccgtc gcgaagttgt agccggagcc ctcgacgtcg cgaacgtggt gccagcggtg
     1861 catcgccggc gagttgatca cccagctcgc cttgccgagc gtccagggca gatcggcatg
     1921 gatgagatag ccccagtagt ggcgaaccag cgcattggcc gccagcgccc acaccggaaa
     1981 gccgagcgcg ctcaggatca ccatgtcggc gagcgagccg atgcggtcga tgggatgcat
     2041 ccgctccagg ctgagccagg tgagctgcgt gtcgctgtgg tggacggcgt gggccggcca
     2101 gagccagcgg ccatgctgca cgcgatggcg ccaatagcca aagaagtcgc ccaggacgac
     2161 cgcggccgcg accgtcggcc agcgtcccat ccaggcccag aggtgacttg agtccagttg
     2221 cagaccatgg ctggtcaggg cgccgacgac ggcggcggtc ccgatggcca ggatcgggcc
     2281 gacggccagc gcatccacgg ccgccatgac ggcgttgatc cgggtttccc ccgccgcggc
     2341 gcgtgcgccg gcgatggcgc cccgccagcc cttggtcagc caggccaggg ccgcgaacgc
     2401 cagcgcacag gcgatcatcg gcgtcagcac gcccatgaac ggctgggcga tccggcctgc
     2461 gacctctgtc agatgcggcg tcatcgggcc tccaccgacg cgccgaagcc ggcgccggtc
     2521 caggatgccg cagctagccg aatcttcgat taatgcggcg cgcggaaaat cagcgctccc
     2581 gccggggtcg cgaacgatcc gccccggcgc cgcaacgccg gattaacggg gccgcgccat
     2641 agtgatcctc catccatgga gcgcgccgtg acggctacca ccagcagcgg gccaagggcg
     2701 cgccagttcg gcaaggtcgg cctgttggcg gcgttggcct tggcctgcgt cgccgtgacg
     2761 atgataggcg ccgagcggat ttggctggcc ctggcgcagc cgctctggtt cgacgaggcc
     2821 tggacgacgg cggtggccgc cacgcccgat tgggcgagct tcctgggcct gatccgcaac
     2881 gacatcaacg caccgctcta cagcgtcctc atgcggctct ggacagatgt cgccggctcg
     2941 tcggacatcg ccctgcgcgc gccgggcctt gcggcgctcg cggcggcggc cgcgatcccc
     3001 atcttcgtcc gggttccggg cctgaagctc gacgcgcggc tggcgtgggg ggtgatgatc
     3061 ttcgcctggt ggggcgtcgg catctt
//
LOCUS       DATAJL010000399         4082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19887,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000399 DATAJL010000000
VERSION     DATAJL010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4082
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19887"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..233)
                     /locus_tag="VHN39_07720"
     CDS             complement(<1..233)
                     /locus_tag="VHN39_07720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816264.1"
                     /translation="MHQAEKPRGAMGVVMGWFLESGNAVQNRATVDALDPPPGAAVLE
                     VGFGPGHALEMLARSRPLGLVAGVDHSELMLARA"
     gene            complement(296..727)
                     /locus_tag="VHN39_07725"
     CDS             complement(296..727)
                     /locus_tag="VHN39_07725"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HEX2816265.1"
                     /translation="MRFMIAAAALSLMAGQAHAADPVEGDWMPDSGTKVHVAPCAAHA
                     DQMCGVITWMKNPNNAAGQPARDTSNPDPSLRGRTLVGLPFIRDFHRAEPGRWTGGKI
                     YDPDSGKTYNSKMQVGADGALKVAGCVLVFCQAQSWRRAPF"
     gene            complement(823..2181)
                     /locus_tag="VHN39_07730"
     CDS             complement(823..2181)
                     /locus_tag="VHN39_07730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816266.1"
                     /translation="MARSPRVIGRWIKRQMPKTLFGRSLLIIVLPVAIMQIAVTYVFF
                     DAHWQTVTSRLSEGLAGDVAWAVESYRDDPSPAAFAKLSKRAEDSMSLSIALQPGRKL
                     PAQRHEAPVLLEPFMAPIDQSLQRALSERLDQPFWFDTTRYPAYVDIRVAVPGGVMRV
                     LAPRDRAFATQGHIFVLWMTVATILLTTIAILFIRNQVRAIERLANAAEAFGRGGDVP
                     AFKPHGAKEVRRAAYAFLDMRARIQRYIDQRTTLLASVSHDLRTPLTRLKLALALAAP
                     SKANAAMKRDLAEMEHMIDEYLAFARGEGGEAVETVHLRELIEQVSEGALRAGAQVTV
                     AADPDLTAAVRPNALKRALSNLIMNAAVHGEHVEVAAGVRAQGGIEIAVDDDGPGIPE
                     AQYEEAFKAFGRLDEARNQNTKGVGLGLAIARDVARGHGGDITLSRSPMGGLRAVIRL
                     PG"
     gene            complement(2344..3054)
                     /locus_tag="VHN39_07735"
     CDS             complement(2344..3054)
                     /locus_tag="VHN39_07735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008262734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2816267.1"
                     /translation="MKPPASGPLRARHLLIVDDDDRIRELLKEYLARAGFRVTAAAGG
                     APARKLMGSLDFDLAVFDVMMPGEDGFSLTRWLRDQKGPAGKTPVLMLTAMGEPSDRI
                     EGLKLGADDYLAKPFEPEELLLRIEAILRRASNRPAQSGTLSLGRCQFDPDRGELTSD
                     GEPVKLTEAEVALLRQLARTPDEPVERLELARGTVDPSGRAVDVQVTRLRRKIEADPK
                     APRYLQTVRGIGYRLAPD"
     gene            3147..4034
                     /locus_tag="VHN39_07740"
     CDS             3147..4034
                     /locus_tag="VHN39_07740"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEX2816268.1"
                     /translation="MSIVPFDDRDGWIWLDGQFVPWREATVHVLTHGLHYASAVFEGE
                     RMYGGEIFELTAHTERLFKSAEILDFEIPFTVAQIDQACKDTCAKNGLTDAYLRPIAW
                     RGSEMIGVSAQNTKIHVAIACWDWPSYFKPEEKAKGIRMCWAKYKRPSPETEPVHAKA
                     TGLYMICTISKHAAEKDGYTDAMMLDWRGYIAESTGSNVFFVKDGALHTPTPDCFLNG
                     ITRQSVIRLAREKGFEVIERHIQPEELAGFSECFVVGTAAEVTPVAEIGEYRFRPGNI
                     SLSLMDDYAKMVRRELVSA"
BASE COUNT          640 a         1329 c         1447 g          666 t
ORIGIN      
        1 gcgcgggcca gcatcagctc ggagtggtcg acgccggcca ccaggccgag cgggcggctg
       61 cgggccagca tttccagggc atggccgggg ccgaagccca cttccagcac agccgcgccg
      121 ggcggcgggt cgagcgcgtc caccgtggcg cggttctgca ccgcgttgcc gctctccagg
      181 aaccagccca tcacgacgcc catggcgccg cgcggcttct ccgcctgatg catgtgggat
      241 ctcatcgtct cggtcatgcc cctagtcgcc gcggtgcgcc gaaacggatg cggcgctaga
      301 acggagcgcg gcgccaggac tgggcctggc agaagaccag gacgcagccc gccaccttca
      361 gggcgccgtc cgctccgacc tgcatcttgg aattgtaggt cttgccgctg tccgggtcgt
      421 agatcttgcc gccggtccag cggccgggct cggcgcgatg gaagtcacgg atgaagggca
      481 ggccgacgag ggtgcgaccg cgcagcgacg ggtcgggatt gctggtatcg cgggcgggct
      541 ggccggcggc gttgttggga ttcttcatcc aggtgatcac gccgcacatc tggtcagcgt
      601 gggcggcgca gggcgccaca tgcaccttcg tgccgctgtc cggcatccag tcgccttcca
      661 ccggatcagc ggcgtgggcc tggcccgcca taaggctgag ggcggcggcg gcgatcatga
      721 aacgcatggg ggtctgcctc gcggattgag ctgcgaagct tcatcccgac gacgctgaac
      781 ggcggatgaa caacgttcgg cgaaaccgcc gtcgcttacg gtctaccccg gcagacggat
      841 cacggctctg aggccgccca tgggggagcg cgacagggtg atgtcgccgc cgtggccgcg
      901 ggccacgtcg cgggcgatgg cgaggcccag tcccacgcct ttggtattct gattacgggc
      961 ttcgtcgagg cgcccaaagg ctttgaaggc ctcctcgtac tgagcctcag gaatgccggg
     1021 accgtcatcg tcgacggcga tttcgatgcc gccctgggcg cggacgccgg cggcgacctc
     1081 gacgtgctcg ccgtggacgg cggcgttcat gatcaggttg gaaagcgcgc gtttcagcgc
     1141 attgggtcgc acggcggcgg tcaggtcggg atcggccgcg acggtgacct gggcgccggc
     1201 ccggagcgcc ccttcgctga cctgctcgat gagctcgcgc agatgcaccg tctccaccgc
     1261 ctcgccgccc tcgccgcggg cgaaggccag gtactcgtcg atcatgtgct ccatctcggc
     1321 gaggtcgcgc ttcatggcgg cgttggcctt ggagggggcg gccagcgcca gcgccagctt
     1381 caggcgggtg agcggggtgc gcaggtcgtg gctgacggag gcgagcaggg tggtgcgctg
     1441 gtcgatgtag cgctggatgc gcgcgcgcat gtcgaggaag gcgtaggccg cgcggcggac
     1501 ttccttggcg ccatgcggct tgaaggcggg cacgtcgccg ccgcgtccaa aggcttcggc
     1561 ggcattggcc agccgctcga tggcgcggac ctggttcctg atgaacagga tggcgatggt
     1621 ggtgagcagg atcgtcgcca ccgtcatcca caggacgaag atgtgcccct gggtggcgaa
     1681 ggcccggtcg cgaggcgcca gcacgcgcat caccccgccc ggcaccgcca cgcggatgtc
     1741 gacgtaggcc gggtagcggg tggtgtcgaa ccagaagggc tggtcgaggc gctcggagag
     1801 cgcgcgctgc agggactggt cgatgggcgc catgaagggt tcgagcagca ctggcgcctc
     1861 gtggcgctgg gcgggcagct tgcggccggg ctgcagcgcg atggagaggc tcatggagtc
     1921 ctcggcgcgc ttggagagct tggcgaaggc ggcggggctc gggtcgtcgc ggtagctctc
     1981 caccgcccag gcgacgtcgc cggccaggcc ctcggagagg cggctggtca ccgtctgcca
     2041 gtgggcgtcg aagaacacgt aggtgaccgc gatctgcatg atcgccaccg gcaggacgat
     2101 gatcagcagg gaccggccga agagcgtctt cggcatctgc cgcttgatcc agcggccgat
     2161 cacgcggggc gagcgagcca tctagtgtcc cgcttccgag gttcgcaagc gcttgccgca
     2221 gcctcggacg aacttcggaa gcgatgagga cactagcaag cctttgtttt ctagtatgct
     2281 tctttggatt tgaagttcgc tcagagcttg gtcctgaatg aggcgaactt caaatccagc
     2341 atgctagtcg ggcgccaatc ggtagcctat gccgcgcacg gtctgcagat agcgcggcgc
     2401 cttggggtca gcctcgatct tacgccgaag gcgcgtcacc tgcacatcca cagcccggcc
     2461 cgacggatcg accgtgccgc gggccagctc cagccgctcc accggctcgt ccggggtgcg
     2521 ggcgagctgg cgcaggaggg ccacctccgc ctcggtcagc ttcaccggct cgccgtcgct
     2581 ggtgagttcg ccgcggtccg ggtcgaactg gcagcgcccg agggagaggg ttccgctctg
     2641 ggccgggcgg ttggaggcgc gtctgaggat cgcctcgatg cgcagcagca gctcctcggg
     2701 ctcgaagggc ttggccagat agtcgtcggc gcccagcttc aggccctcga tccggtcgct
     2761 gggctcgccc atcgccgtca gcatcaggac cggagttttg ccggccggcc ccttctggtc
     2821 gcgcagccat cgggtgagcg agaagccgtc ttcgcccggc atcatgacgt cgaagacggc
     2881 gaggtcgaaa tccaggctgc ccatcagctt gcgcgcgggg gcgccgccag ccgcggcggt
     2941 cacccgaaag ccggcgcggg ccaggtattc cttgagcagt tcgcggatgc gatcgtcgtc
     3001 gtcaacgatc aacagatggc gggcccgaag ggggccggag gcgggcggtt tcatagccca
     3061 gctcctatca ccgtcagccc attttgtttg acgccgggcg cccaggcgcg ttctagagga
     3121 gacttctgaa aggaggtcac cctctcatgt ctatcgttcc cttcgacgac cgcgatggtt
     3181 ggatctggct ggacggccag ttcgtgccct ggcgcgaggc gacggtgcat gtactgacgc
     3241 atggcctgca ttacgcctcg gccgtgttcg agggggagcg gatgtacggg ggtgagatct
     3301 tcgagctgac ggcgcacacc gagcgtctct tcaagtccgc cgagatcctc gacttcgaaa
     3361 tcccgttcac ggtggcccag atcgatcagg cctgcaagga cacctgcgcc aagaacggcc
     3421 tgaccgacgc ctacctgcgg cccatcgcct ggcgcggctc ggagatgatc ggggtctcgg
     3481 ctcagaacac caagatccac gtggcgatcg cctgctggga ctggccgagc tatttcaagc
     3541 ccgaggaaaa ggccaagggc atccgcatgt gctgggccaa atacaagcgc ccctctccgg
     3601 aaaccgagcc ggtccacgcc aaggccaccg gcctctacat gatctgcacc atctccaagc
     3661 acgccgcgga gaaggacggc tacaccgacg ccatgatgct cgactggcgc ggctacatcg
     3721 ccgagtccac cggctccaac gtgttcttcg tcaaggacgg ggcgctgcac accccgaccc
     3781 ccgactgctt cctgaacggc atcacccgcc agtcggtgat ccgcctggcg cgggagaagg
     3841 gcttcgaggt catcgagcgc cacatccagc ccgaggagct ggcgggcttt tccgagtgct
     3901 tcgtggtggg caccgccgcc gaggtcaccc cggtggcgga gatcggcgag taccggttcc
     3961 ggccgggcaa catctcgctc agcctgatgg acgactacgc caagatggtc cggcgcgagc
     4021 tggtgtcggc ttaaggcagg ctcaccagat gcccggcgcg tacttccaac gcacacgtcg
     4081 gg
//
LOCUS       DATAJL010000400         2317 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45707,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000400 DATAJL010000000
VERSION     DATAJL010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45707"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1114)
                     /locus_tag="VHN39_07745"
     CDS             complement(47..1114)
                     /locus_tag="VHN39_07745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEX2816269.1"
                     /translation="MAGNWMDDRERQIREREERGLGRGPSGDRGRSAETRSWDRVFGA
                     QETGANYGGPAPGGPRDGSASRGWQSPDYEGVSPAMRQGAYGGAYGQSPRFTNQDYTA
                     GGGRFYGDDDSERVYREDYGLVGYDAQRSPTRERYHNAGYGQPGYGGYPGEHRRNLGK
                     PLSGGTGGYDYAERGYGDGGRRESRGDRFEDAGRGAGEFLHRAGEKMASWFNGGGEGR
                     IYDADYLDPSHGKRGLGPQGYKRSDDRISDDIHERLTDDAWLDASNISISVSGGEVTL
                     SGTVDSREAKHHAERIVENLSGVSHVQNNLRVAKGNFLTSPSAGYGDSVLGAQMRAAD
                     DAVGSGTGGSGSGQSTAGKKN"
     gene            complement(1200..>2317)
                     /locus_tag="VHN39_07750"
     CDS             complement(1200..>2317)
                     /locus_tag="VHN39_07750"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEX2816270.1"
                     /translation="DSLAGYADIFLQNVLYSGVIPQISVIMGPCAGGDVYSPAITDFI
                     FMVKDTSYMYVTGPDVVKTVTHEEVSHEELGGYRIHALKSGVADGAFENDLEALTQVR
                     RLVDFLPLSNREKPPVRESFDEPEREEASLDTLIPANPNKPYDMKELILKVVDEADFF
                     EISPDYAKNIVCGFARLDGQPVGIVANQPQVLAGVLDIDASRKAARFVRFCDAFEFPL
                     ITFVDVPGFMPGTRQEQGGLIRHGAKLLFAFAEATVPKITLITRKAYGGAYDVMSSKH
                     IRGDINYAWPTAEIAVMGSKGAVEIIFRNQTPEQLVEHEAQYKARFANPFVAASRGYI
                     DDVIMPHGTRRRIVRALKNLKGKQLTNPWKKHDNIPL"
BASE COUNT          316 a          774 c          804 g          423 t
ORIGIN      
        1 gcgccaggcc ggcagaccta gcgcggaagc gaagatcggg ctcgccctag ttcttcttgc
       61 cggccgtgga ctgcccggag ccggagccgc ctgttccgct gcccaccgcg tcgtcggcgg
      121 cgcgcatctg ggcgcccagc acgctgtcgc catagccggc tgaggggctg gtcaggaagt
      181 tccccttggc cacgcgcagg ttgttctgca cgtgggacac cccggagagg ttctcgacga
      241 tccgttcggc gtggtgcttg gcctcgcggc tgtccaccgt gccggagagc gtcacctcgc
      301 cgcccgacac cgaaatcgag atgttcgagg cgtccagcca ggcatcgtcg gtcagccgct
      361 cgtggatgtc gtcgctgatc cggtcgtcag agcgcttgta gccctgagga cccaggccgc
      421 gcttgccgtg gctggggtcg aggtagtcgg cgtcatagat gcggccctcg ccgccgccgt
      481 tgaaccagga cgccatcttc tcgcccgccc gatgcaggaa ttcgccggcg ccgcggccgg
      541 cgtcctcgaa gcggtcgccg cggctctcgc gccggccgcc gtcgccgtag ccgcgctcgg
      601 cgtagtcata gccgccagtt ccgccgctta agggcttgcc gaggttgcgg cgatgctcgc
      661 caggatagcc gccgtatccc ggctggccgt agccggcgtt gtgatagcgc tcccgggtcg
      721 ggctgcgctg ggcgtcatag ccgaccaggc catagtcctc gcggtagacg cgctcgctgt
      781 cgtcgtcgcc gtagaagcgc ccgccgcctg cggtgtagtc ctggttggtg aagcgagggc
      841 tttggccgta ggcgccccca taggcgccct gccgcatggc cgggctcaca ccctcatagt
      901 cggggctctg ccagccgcgc gaggccgagc cgtcgcgcgg cccgcctggc gccggaccgc
      961 cataattggc ccctgtctcc tgcgcgccga acacccgatc ccagcttcgc gtctcggcgc
     1021 tgcggccccg gtctccgctg ggcccgcgcc cgagcccgcg ctcctcccgt tcgcgaatct
     1081 gccgttcgcg atcgtccatc cagttgccgg ccatgggaaa ttctccgtgt tgtggcgtgg
     1141 ggtcgagccc ttgcgccaac aaccggaccg gtccggggga ggttccgcgt aaagcgtcct
     1201 tagagcggaa tgttgtcgtg cttcttccag gggttggtga gctgcttgcc cttgaggttc
     1261 ttcagcgcgc gcacaatccg ccgccgcgtg ccgtggggca tgatcacgtc gtcgatgtag
     1321 ccccgggagg cggcgacgaa ggggttggcg aagcgggcct tgtactgcgc ctcgtgctcg
     1381 acgagctgtt cgggggtctg gttgcggaag atgatctcca ccgcgccctt tgagcccatg
     1441 acggcgatct cggcggttgg ccaggcgtag ttgatgtcgc cgcggatgtg cttggagctc
     1501 atcacgtcat aggcgccgcc ataggccttc cgcgtgatga gcgtgatctt cggcaccgtg
     1561 gcctcggcga aggcgaacag cagcttcgcc ccgtggcgga tcaggccgcc ctgctcctgc
     1621 ctggtgcctg gcatgaagcc cgggacgtcg acgaaggtga tcagcgggaa ttcgaaggcg
     1681 tcgcagaagc gcacgaagcg ggcggccttg cgggaggcgt cgatgtccag cacgccggcc
     1741 agcacctgcg gctggttggc gacgatgccc accggctgac cgtccaggcg ggcgaagccg
     1801 cagacgatgt tcttggcgta gtccgggctg atctcgaaga agtcggcctc gtccaccacc
     1861 ttcaggatca gctccttcat gtcgtagggc ttgttgggat tggccgggat cagggtgtcg
     1921 aggctggcct cctcgcgctc gggctcgtcg aagctctcgc ggaccggcgg cttctcgcga
     1981 ttggagagcg gcaggaagtc caccagccgg cggacctggg tcagcgcctc aaggtcgttc
     2041 tcgaaggcgc cgtccgcgac gcccgacttc agcgcatgga tgcggtagcc gcccagctcc
     2101 tcgtggctga cttcctcgtg ggtgaccgtt ttcaccacgt cggggccggt cacgtacatg
     2161 tagctcgtgt ccttcaccat gaagatgaag tcggtgatcg ccggcgaata gacgtcgccg
     2221 ccggcgcagg gccccatgat cacgctgatc tgcgggatga cgccggaata gagcacgttc
     2281 tgcaggaaga tgtcggcata gccggccagg ctgtcga
//
LOCUS       DATAJL010000401         5994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_19919,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000401 DATAJL010000000
VERSION     DATAJL010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5994
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_19919"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..488)
                     /locus_tag="VHN39_07755"
     CDS             complement(<1..488)
                     /locus_tag="VHN39_07755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2816271.1"
                     /translation="MANELVFYTNPMSRGRIVRWMLEEVGQLYRTEILGYADSMKAAA
                     YLAVNPMGKVPAIKHGDTVVTEGAAICAYLADAFPEAGLAPPLKDRGDYYRWLFFAAG
                     PIEAAVTAKSLGFQPKPEQERMAGFGSLAHVMDALETAVAGREFIAGGKFSAADVYVG
                     SQ"
     gene            complement(577..2403)
                     /locus_tag="VHN39_07760"
     CDS             complement(577..2403)
                     /locus_tag="VHN39_07760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEX2816272.1"
                     /translation="MNQFDRRSFLATTAGAALLTAAPALAQAGSEDARLRIMLDQMFE
                     AQVDESPGRATSLGLDKGRRAPLKSQLDDNSLEARAKRLERTRSRAAQLHTIDRSQLS
                     AASKVDLDVVLYGQEQAVRGGDKWKFGDTGGNYRPYVISQQSGDYQQVPDFLDSAHKV
                     ANAEDAEAYLSRLNAFGRAMDQDLDRQKHDVALGAIPPTFICDLSIGQMKALRDQPAG
                     KTILVASIARKAKAANLTGDWEGRATRIVEGEVFPALDRQIAAMTALKAKTKGDTGAW
                     ALPNGADYYADAVKASTTTDYTPEQVHQLGRDQVAEISGRLDAILKKRGLTKGAVGAR
                     LVTLNNQPDQVFANTDEGRAQILKLLNEHIVEVYKILPKAFRTLPKATVEVRRVPGFI
                     QDGAANGYYNSAALDGSRPAAFYINLKETSDWPKYNLWTLAHHETIPGHHLQIALSQE
                     STQIPIIRRTGGGFSAFTEGWALYAEQLAQELGANDFDPLGEAGYLQSLLFRAARLVT
                     DTGIHAKRWSREQATMYMVDTIGNTKTRAQREVERYFAGPGQANSYKVGHTVWVKVRD
                     EAKAKLGPKFDLKAYHDAVLLSGSMPLTVLQRHVSEWIATQV"
     gene            complement(2430..4238)
                     /locus_tag="VHN39_07765"
     CDS             complement(2430..4238)
                     /locus_tag="VHN39_07765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEX2816273.1"
                     /translation="MLSRRHILISAGATLALAGAAGAKTASGAEAQLNKVLDDMFTVA
                     LDESPELSTSLGLDVGARVADKSKLSHSSLASLARDKALNTQQLAQLRGVDRKALTSM
                     AAVNYDCVLYDLETTERGNKRFAYGHEGAGSPYIISQINGSWGEVPDFLDSQHTIATK
                     ADCEAYIARLDAFARLMDEECERVRHDVGLGVIPPDFAIAGAIAQMKVLHAPADKSTL
                     VSSVADRAKAKGIAGDWAGQAAGVYTGKVLPALERQMALMATLQPKAVHDAGVWRLPD
                     GEAYYADALQARTTSTLSPAEVHKLGLDITAELSARADTLFKKIGLSQGTVGERYAQL
                     YKDPKYLYPNTDEGKAKEVADLNLLVQRMQKRLPEYFATLPKTPLEIRRIPASTEAGA
                     STHYTNGSLDGTRPGIYWLNLRDTGEAPYWDMPTTTFHEGIPGHHLQLTLQQAADLPM
                     IRKAGGFGAYIEGWALYSEQLADEMHFYADDPAGELGYIHDALLRSGRLVTDTGLHAL
                     RWSREKAVETLSGIEGDPPAYSGQEIERYAVNPGQACSYMVGKVTILRLRAKAQSALG
                     PKFDIRQFHDAVLLAGSMPLTVLENVVDSYIASHKA"
     gene            4389..>5994
                     /locus_tag="VHN39_07770"
     CDS             4389..>5994
                     /locus_tag="VHN39_07770"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816274.1"
                     /translation="MTMPMRYTFIAAAGLLTGLVVTSSAVAADGILPTGQRLTPEAAH
                     GAIFQPLNPDLPELPAFTAGQASAVSLSPDRRTLLVLTTGYNRNLGADGKQVPGLSNE
                     YVFVFDVSGAAPVKRQVLQVPNTFLGMAWAPSGERFYVSAGVDDAILEYQAGAQSYQP
                     ARSFPLGHAAGLGIRVKPEAAGIAVSPDGRWLLAANLQNDSVSLVDLSSGKVAAERDL
                     RPGKIDPARHGQPGGSYPRAIAWTGPRTAFVTSERDREIIALAVSGNALAVTRRIRTT
                     GQPTALLAAPGGRLYAALGNTDSVATIDAASGRIVGRTPTVATVALMAGRRFEGGANS
                     NALALSPDGHTLYVTNGGENAVAVVSLGGGKAKARVTGLIPTGWYPSGVAAAGGKLYV
                     VNGKSDPGPNPGWCRNTLSVDPKDAVPCRASNSYVWQLEKAGFLTVPAPDAAELKRLT
                     HQVAVNVGFAPDPGAAQDAALMAAIRARIKHVIFIVKENRTYDQMLGDLEVGDGDPKL
                     AIFPQGMTPNQHAIARQFVTLDRFFAS"
BASE COUNT          867 a         2042 c         2054 g         1031 t
ORIGIN      
        1 atctgcgagc ccacatagac gtccgccgcg ctgaacttgc cgccggcgat gaactcgcgg
       61 ccggcgaccg cggtctccag cgcgtccatc acgtgagcga gcgagccaaa tcccgccatg
      121 cgctcctgct cgggcttggg ctggaatccg aggctcttgg ctgtcaccgc cgcctcgatc
      181 gggccggccg cgaagaacag ccagcgatag tagtcgccac ggtccttgag cggtggcgcg
      241 aggccagcct cggggaaggc gtcggccaga taggcgcaga tcgccgcgcc ctcggtcacc
      301 acggtgtcgc catgcttgat cgccggcacc ttgcccatgg gattgaccgc cagataggcc
      361 gcggccttca tcgagtccgc gtagcccagg atctcggtgc ggtagagctg gcccacttcc
      421 tccagcatcc agcgcacgat gcgcccgcgt gacatggggt tggtgtagaa aaccagttcg
      481 ttcgccatgg gtttcgtcct ctcgtccaag cccgttaccg agcgtcggcg ccacggtgga
      541 cgggacgtac tgacagcatc ctgtcagcag ccgccgtcac acctgggtcg cgatccactc
      601 cgacacatgc cgttgcagca ccgtcagcgg catggagccg gagagcagca ccgcatcgtg
      661 gtaggccttg aggtcgaatt tcgggccgag cttggccttg gcctcgtcgc gcaccttcac
      721 ccagaccgtg tggccgacct tgtagctgtt ggcctggccg ggcccggcga aatagcgctc
      781 cacctcgcgc tgggcgcggg tcttggtgtt gccgatggtg tcgaccatgt acatcgtcgc
      841 ctgctcgcgg ctccagcgct tggcgtggat gccggtgtcg gtgaccaggc gcgcggcgcg
      901 gaacagcagg ctctgtagat agccggcctc gcccagcgga tcgaagtcgt tggcgcccag
      961 ctcttgggcc agctgctcgg cgtagagcgc ccaaccctcg gtgaaggccg agaagccgcc
     1021 gccggtgcgc cggatgatcg gaatctgcgt cgactcctga gacagcgcga tctgcaggtg
     1081 atggcccggg atcgtctcgt ggtgggccag cgtccagaga ttgtacttcg gccagtccga
     1141 cgtctctttc aggttgatgt agaaggccgc cggccgcgag ccgtcgagcg ccgcgctatt
     1201 gtaatagcca ttggccgcgc catcctggat gaaccccggc acccggcgca cctcgacggt
     1261 ggccttcggc agcgtccgga acgccttggg caggatcttg tagacctcga cgatgtgctc
     1321 gttcagcagc ttcaggatct gggcccggcc ctcgtcggtg ttggcgaaga cctggtcggg
     1381 ttggttgttc agcgtcacca gacgcgcgcc gacggcgccc ttggtcaggc cgcgtttctt
     1441 gaggatggcg tccagccggc cggagatctc cgccacctgg tcgcggccca gctggtggac
     1501 ctgttccggc gtgtagtcgg tggtggtcga ggccttcacg gcgtcggcgt agtagtccgc
     1561 gccgttgggc agcgcccagg cgccggtatc gcccttggtc ttggccttca gcgcggtcat
     1621 ggcggcgatc tggcggtcca gggccgggaa aacctcgcct tcgacgatcc tggtcgcccg
     1681 gccctcccag tcgccggtga ggttggcggc cttggccttc ctggcgatcg aggcgacgag
     1741 gatcgtcttg cccgcgggct ggtcgcgcag cgccttcatc tggccgatgg aaaggtcgca
     1801 gatgaaggtg ggcggaatgg cccccagcgc cacgtcgtgc ttctggcggt ccaggtcctg
     1861 atccatcgcc cggccaaagg cgttcaggcg ggagagatag gcctccgcgt cctcggcatt
     1921 ggccaccttg tgggcgctgt ccaggaagtc cgggacctgc tggtaatcgc ccgactgctg
     1981 gctgatcaca taggggcggt agttgccgcc ggtgtcgccg aacttccact tgtctccgcc
     2041 gcggaccgcc tgctcctggc catagagcac gacgtccaga tcgaccttgg aggctgccga
     2101 gagttggctc cgatcgatgg tgtggagctg cgcggcccgg cttcgcgtgc gctcgaggcg
     2161 cttggcgcgg gcttcaaggg aattgtcgtc gagctgcgac ttgagcggcg cgcgccggcc
     2221 tttgtcgagc cccagcgagg tggccctgcc ggggctttca tccacttggg cctcgaacat
     2281 ctggtcgagc atgatccgca gcctggcgtc ctcggaaccc gcctgggcga gcgcaggcgc
     2341 agccgttagc agcgccgctc ccgccgtggt cgcgaggaag ctgcggcgat cgaattgatt
     2401 cattatttcc gtcccctgga agaaaatact caggctttgt gcgaggcgat atagctgtcg
     2461 accacattct ccagcacggt cagcggcatg gagccggcca gcagcacggc gtcatggaac
     2521 tggcggatgt cgaacttcgg accgagcgcc gactgggctt tcgccctcag gcgcaggatc
     2581 gtcaccttgc ccaccatgta gctgcaggcc tgacccggat tgacggcgta acgctcgatc
     2641 tcctggccgg aataggcggg cggatcgccc tcgatcccgc tcagcgtctc gaccgccttt
     2701 tcgcggctcc aacgcagggc atgcaggccg gtgtcggtca ccagacggcc cgaacgcagc
     2761 agggcgtcgt ggatgtagcc cagctcacct gccggatcgt cggcgtagaa gtgcatctcg
     2821 tcggcaagct gctcggaata gagcgcccag ccttcgatat aggccccgaa gccgcccgcc
     2881 ttgcggatca tcggcaggtc ggccgcctgc tgcagggtga gctgcaggtg gtggcccggg
     2941 atgccttcgt ggaaggtggt cgtcggcatg tcccaatagg gcgcctcgcc ggtgtcgcgc
     3001 aggttcagcc aatagatgcc ggggcgcgtc ccatccaggc tgccgttggt gtagtgggtc
     3061 gaggcgccgg cttcggtgga ggccgggatg cggcggatct ccagcggcgt cttgggcagg
     3121 gtcgcgaagt actccggcag acgcttctgc atccgctgga ccagcagatt gaggtcggcg
     3181 acctccttgg ccttgccctc atcggtgttt ggatagaggt acttcgggtc cttgtagagc
     3241 tgggcgtagc gctccccgac ggtcccttgg ctcaggccga tcttcttgaa cagcgtatcg
     3301 gcccgggcgc tcagttcggc ggtgatgtcg aggcccagct tatggacctc ggccgggctc
     3361 agggtcgagg tggtccgcgc ctgcagggcg tcggcgtagt aggcttcgcc gtccggcagg
     3421 cgccagacgc ccgcgtcatg gaccgccttg ggctgcaggg tcgccatcag cgccatctgg
     3481 cgctccaggg ccggcaggac cttgcctgtg tagacgcccg ccgcctgccc ggcccagtcg
     3541 ccggcgatgc ccttggcttt ggcccggtcg gcgacggagg agaccagcgt cgatttgtcg
     3601 gccggcgcgt gcagcacctt catctgggcg atggcgccgg cgatggcgaa gtccggcgga
     3661 atgacgccga ggcccacgtc atggcgcacc cgctcgcact cttcgtccat caggcgggcg
     3721 aaggcgtcca ggcgggcgat gtaggcttcg cagtcggcct tggtggcgat ggtgtgctgg
     3781 ctgtccagga agtcggggac ttcgccccac gacccgttga tctggctgat gatgtaggga
     3841 ctgcccgcgc cctcgtggcc gtaggcgaaa cgcttgtttc cgcgctcggt ggtctcaagg
     3901 tcgtagagaa cgcagtcgta gttcaccgcc gccatgctgg tgagcgcctt gcgatcgacg
     3961 ccgcgcaact gggcgagttg ctgggtgttg agcgccttgt cgcgcgccag cgaggccagc
     4021 gaactgtggc tgagtttcga cttgtccgcg acacgggcgc cgacgtcgag accgagggac
     4081 gtcgagagct cggggctctc gtccagagcc acggtgaaca tgtcgtccag caccttgttg
     4141 agctgggcct cggcccccga ggcggtcttc gcgccggcgg cgccggccag cgccagggtg
     4201 gcgccggcgg agatcaggat gtggcggcgg ctcagcaagg tctcggctcc tgttaccttt
     4261 tgtggaagct aggcttaagg tctgtccggc gaggggcgca aggcgctgtc gccctgggcg
     4321 acggttcgcc catgagacag atcccaccgt tgcgtcgtcg acctgtcatc tatcgcggcc
     4381 agggtgccat gaccatgcca atgcgctaca cgttcatcgc cgccgcgggg ttgctcaccg
     4441 gcctcgtcgt cacctcttcc gcggtcgccg cggacgggat cctgccgacc ggccagcgcc
     4501 tgacgccgga ggccgcgcac ggggcgatct tccagccgct caatccggac ctgccggagc
     4561 tgccggcgtt caccgcgggc caggcctcag ccgtgtcgct ctcgccggat cggcgcaccc
     4621 tgctggtcct gaccacgggc tacaaccgca acctcggcgc cgatggcaag caggttcccg
     4681 gcctcagcaa cgaatacgtg ttcgtcttcg acgtgtcggg cgcggcgccg gtgaagcgcc
     4741 aggtgctgca ggtccccaac accttcctgg gcatggcctg ggcgccgtcc ggcgagcgtt
     4801 tctatgtctc ggccggggtc gacgacgcta tcctggaata ccaggcgggc gcccagagct
     4861 accagccggc ccgaagcttc ccgctcggcc acgcggccgg tctgggaatc cgggtcaagc
     4921 cggaggccgc cggcatcgcc gtcagccccg atggccgctg gctgctggcc gccaatctgc
     4981 agaacgactc ggtcagcctg gtcgaccttt ccagcggcaa ggtcgcggcc gaacgcgacc
     5041 tgcgtcccgg caagatcgat cccgcccgcc acggccagcc cggcgggagc tacccgcgcg
     5101 ccatcgcctg gaccggtccg cgcaccgcct tcgtcacctc cgagcgcgac cgcgagatca
     5161 tcgcgctcgc ggtgagcggc aacgccctgg ccgtgacccg ccgcatccgc accaccggcc
     5221 agccgacggc cctgcttgct gccccgggcg gccggcttta cgcggcgctc ggcaacaccg
     5281 acagcgtggc caccatcgac gcggccagcg gccggatcgt cgggcgcacg cccaccgtgg
     5341 cgaccgtggc cctgatggcc ggccgccggt tcgaaggcgg cgccaacagc aacgcgctgg
     5401 ccctctcgcc cgacggccac accctctatg tcaccaacgg cggggagaac gccgtggcgg
     5461 tggtctcgct gggcggcggc aaggccaagg cccgcgtcac cggcctgatc cccaccggct
     5521 ggtatcccag cggcgtcgcc gcggcgggcg gcaagctcta tgtggtgaac ggcaagagcg
     5581 acccgggccc gaaccccggc tggtgccgca acaccctcag cgtcgacccg aaggacgccg
     5641 tcccctgccg cgccagcaac agctatgtct ggcagctgga aaaggcgggc ttcctcaccg
     5701 tgcccgcgcc cgacgccgcc gaactcaagc ggctgaccca tcaggtggcg gtgaacgtgg
     5761 gcttcgcgcc cgatccgggg gccgcgcagg acgccgccct gatggccgcc atccgcgccc
     5821 gcatcaagca cgtcatcttc atcgtcaagg agaaccgcac ctacgatcag atgctgggcg
     5881 acctggaggt cggcgacggc gatccgaagc tggcgatctt cccgcagggc atgacgccga
     5941 accagcacgc catcgcccgc cagttcgtga cactggaccg gttcttcgcc tcgg
//
LOCUS       DATAJL010000402         1882 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33058,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000402 DATAJL010000000
VERSION     DATAJL010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33058"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(69..233)
                     /locus_tag="VHN39_07775"
     CDS             complement(69..233)
                     /locus_tag="VHN39_07775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp family type IVb pilin"
                     /protein_id="HEX2816275.1"
                     /translation="MSKFVQRFCTDESGATAIEYGLIAALVAVVLVTALGAMGNKLSS
                     TFTKVTADLP"
     gene            501..1085
                     /locus_tag="VHN39_07780"
     CDS             501..1085
                     /locus_tag="VHN39_07780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HEX2816276.1"
                     /translation="MRTAPPSRLSRFASRFARAERGATAVEFGLVSLPILMMIFGLLE
                     IAMVFLVGTTLDQATQAAARQIRTGEFQTSATPTKAAFKALVCQRMTWLQPKCNADLW
                     LDVQTYSDFATLAATPPMNAPAFDPNTTCFSTGQPTDIVLVRAYFEWDLITPLLSVAL
                     QNMGGGSGKRLISSTTAFRNEPYNDNPPVGTKCN"
     gene            1076..1630
                     /locus_tag="VHN39_07785"
     CDS             1076..1630
                     /locus_tag="VHN39_07785"
                     /inference="COORDINATES: protein motif:HMM:NF019428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TadE/TadG family type IV pilus assembly protein"
                     /protein_id="HEX2816277.1"
                     /translation="MQLKRALKRLIPRRIRSDQRGAAAVEFALIAPVAILLYCGFTEL
                     TMAMMAERRAAHAASVVADLVSQSTQVTGAQMTDIFIVGNAIMSPFPTPPLKLRVTSV
                     TADQNGIPRVTWSKGSGMGAMVGGTQVSGFPPNLLVAGDSVIQADVQYAYTSPLQMTL
                     PNALTFNDTFYLKPRRSTTVQLLP"
     gene            complement(1637..>1882)
                     /locus_tag="VHN39_07790"
     CDS             complement(1637..>1882)
                     /locus_tag="VHN39_07790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816278.1"
                     /translation="GQYASSRTLLTRLTPPHLAGAFFGVFALSGVATAWLAPTLVNWG
                     TRATHSQQGGFATIIVLLAVGLVGLMFVKGGGRQVQP"
BASE COUNT          351 a          630 c          554 g          347 t
ORIGIN      
        1 ctcgtctttc agaaaacgcg agacgaactt ggacatggaa tgtctcctct aggtgagcgt
       61 agggtctatt agggaaggtc tgccgtaacc ttggtgaagg tgctcgacag cttgttgccc
      121 atggcgccga gcgcggtcac gaggaccacg gcgaccaggg cggcgatcag gccgtattcg
      181 atggcggtgg cgccggattc atcggtgcag aagcgttgaa cgaacttgga caaggcacat
      241 ctccttttaa gcgagcgatg agcctggaac cgattggcct gctcgcccta atacgccctc
      301 aaattcgcag acttcgctta atcggcagta aagaccgaag tattcaatct aattttcttt
      361 ggtgaattga tattcactgt caattctcgt taaccaagag acaatcgaca ctagagcttc
      421 tttctttcac ggttattcgt agcgcttaaa tcttgattag ccacagcgcg gtaagatggg
      481 gcgtcattga agaggccgcc gtgcgcacag ccccgccttc ccgtctgagc cgtttcgcgt
      541 cccgcttcgc ccgcgccgag cgcggcgcca cggccgttga attcggcctg gtcagcctgc
      601 cgatcctgat gatgattttc ggcctgctcg agatcgccat ggtgttcctg gtgggcacca
      661 cgctcgacca ggccacccag gcggccgctc gccagatccg caccggcgaa ttccagacca
      721 gcgccactcc caccaaggcc gctttcaagg ccctggtctg ccagcggatg acctggctcc
      781 agcccaagtg caacgccgac ctgtggctgg acgtgcagac ctattccgac ttcgccaccc
      841 tggctgccac gccgccgatg aacgcgccgg ccttcgaccc caacaccacc tgcttttcga
      901 caggccagcc caccgacatc gtcctggtgc gggcctattt cgagtgggac ctgatcaccc
      961 cgctgctgag cgtggctctt cagaacatgg gcggcggttc gggaaagcgg ctgatctcct
     1021 cgaccacggc attccgcaac gagccctata acgacaatcc gccggtaggc acgaaatgca
     1081 actgaagcgc gctctgaaac gcctcattcc tcgtcgtatc cgttcggacc agcggggcgc
     1141 cgcggcggtc gaattcgcgc tgatcgcgcc tgtcgcgatc ctgctctatt gcggcttcac
     1201 cgagctcacc atggcgatga tggccgagcg gcgcgcggcc cacgcggcct ccgtggtggc
     1261 cgacctggtg tcgcagtcga cccaggtcac cggcgcccag atgaccgaca tcttcatcgt
     1321 cggcaacgcc atcatgagcc cattcccgac tccgcccctg aagctgaggg tgaccagcgt
     1381 caccgccgac cagaacggga ttccacgggt gacctggagc aaaggcagcg gaatgggcgc
     1441 gatggtcggc ggtacccagg tctccggctt tccccccaac ctgctggtgg ccggcgacag
     1501 tgtgatccag gccgacgtgc agtacgccta cacctcgccg ctgcagatga ccctgcccaa
     1561 cgcgctgacg ttcaacgaca ccttctattt gaagccccgc cgctccacca cggtgcagtt
     1621 gctgccctag cctggactag ggctggacct gacggccgcc gcccttcacg aacatcagcc
     1681 cgaccaggcc caccgccaga aggacgatga tggtggcgaa gccgccttgc tggctgtgcg
     1741 tcgcccgcgt gccccagttg accagggtcg gggccagcca ggccgtcgct acgccggaca
     1801 gcgcgaagac gccgaagaac gccccggcca gatgcggcgg cgtcagccgg gtcaaaagcg
     1861 tgcggctgga ggcgtactgg cc
//
LOCUS       DATAJL010000403         4486 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_81485,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000403 DATAJL010000000
VERSION     DATAJL010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4486
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81485"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VHN39_07795"
     CDS             <1..181
                     /locus_tag="VHN39_07795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome B"
                     /protein_id="HEX2816279.1"
                     /translation="KPLDLPFKLKIVGDRAQMSGETSLDRTLFGVGQGEFTATDQVPA
                     KVTVRVQLNAQSDKR"
     gene            274..1035
                     /locus_tag="VHN39_07800"
     CDS             274..1035
                     /locus_tag="VHN39_07800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2816280.1"
                     /translation="MKPLALAACLAVSLGAAAVAAASDLPAYVAAAVADKGRDADRDA
                     DARRHPGEVIAFSGVKAGDKVVDLIPGSGYFTKIFSKIVGPKGHVYMIWPNEYAKEAQ
                     PDPVKNEELAKTGYPNTSVILQPGAAFSAPEPVDLVFTVQNYHDYPDKFMGKIDPMIF
                     NRAVYKALKPGGVFLVVDHTAEAGSGMRDTDTLHRIDPAIVKKQVTDAGFVFEGESKV
                     LRNPADDLKKLVFDKSIRGHTDQFIYKFRKPAKAR"
     gene            1287..3596
                     /locus_tag="VHN39_07805"
     CDS             1287..3596
                     /locus_tag="VHN39_07805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816281.1"
                     /translation="MRSPLQAASWFFENAHDLFGVVGADGRLLSVNPAWELVTGWAPD
                     ELIGRPLLDIMHDDCRDEVIEMGRAVAAHGSTVTRMQLRKKDGGSVWLEGYAASGPNG
                     EIMGTLRDVTAERRRAEELEHIRHVQLRLQETAGVGLWRFDPETEQLDWSDEWLAMFA
                     EAGVKVATVEDFMAVCHPDDAEGVVAAIDRAVEGAGMVAFNHRFQAANGRWIWIRANV
                     WAERGADGRQIVHGISQVTTELAEALEAVTEARRSAEGQAHRLKIALGAAKAAVLEVD
                     AVTQRVWCSPEFVALVGREMTFAEALSPVWPFIHPDDAASVLAAVAERRPGERAEPLD
                     ARIVLANGEPLWARFFLEIENDANGLPHRAVVLVMDIDAAKRQELALIEAEHAAQMAA
                     EAKSQFLANMSHEIRTPMNGVLGVLHLLKSQSLPEASRAMIDEALACGGMLQALLDDV
                     VDFSKIEAGRLELAKEAADPAAIIEGVVKMLRPQAEDKGLALRLEAKDLPPWVVTDPV
                     RLRQCLFNLIGNAVKFTPGGSVTVRALRKDAPTGHRLRFEVEDTGIGIDEQAQARLFH
                     RFQQADATTTRRFGGSGLGLAITRKLVTMMEGEVGVLSTPGKGSTFWFEIAAPEVEAP
                     RDDTGTDDGLLDGLSVLIVEDNATNRMIVTKMLEGLGAAVETAEDGERGVEAALLGAF
                     DLILMDIQMPGIVGLEATRQIRRSGVSAALTPIIALTANVLTHQREAYLASGMDGVVG
                     KPVSPGALLSEIARVAAQDPRADQAQLSG"
     gene            3663..>4486
                     /locus_tag="VHN39_07810"
     CDS             3663..>4486
                     /locus_tag="VHN39_07810"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEX2816282.1"
                     /translation="MDDTADIAKAAAALKAGHLVILPTETVYGLAADAANPRAVAAVY
                     EAKGRPSFNPLIAHVADITTARRIARFDDRAEVLAAAFWPGPLTFVLRIADEAAVCDL
                     ARAGLDTVAVRAPAHPLAHALLEAFGGPLVAPSANRSGRPSPTTFADAMEETGASTAA
                     ALDGGPCPIGLESTVIALLDQPRLLRPGAVTRAEIEALIGPLSEAEADAKRSPGRLTR
                     HYAPDLPLRLNAEEPRDGEVWLGFGHAHQGERGAEPFNLSRDGDLAEAAANLFAYLR"
BASE COUNT          731 a         1535 c         1547 g          673 t
ORIGIN      
        1 gaagccactc gacctgccgt tcaagctgaa gatcgtcggc gacagggcgc agatgtcggg
       61 cgagaccagc ctcgaccgca cgctcttcgg ggtcggccag ggcgagttca cggccaccga
      121 ccaggtgccg gccaaggtca ccgttcgcgt ccaactgaac gcgcagagcg acaagcggta
      181 gactttcatc taccggcggt cgctcgcatc attgacaggg cgagcggccc gccagagctt
      241 ggcgccagct tcaccctaac cctggatgtg acgatgaaac ccttagcctt ggccgcctgc
      301 ctggcggtca gcctcggagc cgcggcggtc gccgccgcgt ccgaccttcc ggcctatgtc
      361 gccgccgctg tggccgacaa gggccgcgac gccgaccgcg acgccgacgc ccggcgccac
      421 cccggcgagg tcatcgcctt ttctggcgtg aaggccggcg acaaggtcgt cgatctgatc
      481 ccgggctccg gctatttcac caagatcttc tcgaagatcg ttgggcccaa gggccacgtc
      541 tacatgatct ggcccaacga gtacgccaag gaagcccagc ccgacccggt gaagaacgag
      601 gagctggcca agaccggcta tcccaacacc tcggtgatcc tgcagcccgg cgcggcgttc
      661 tccgcgcccg agccggtgga tctggtgttc acggtccaga attatcacga ctatccggac
      721 aagttcatgg gcaagatcga cccgatgatc ttcaaccggg cggtctacaa ggccctgaag
      781 cccggcggcg ttttcctggt ggtggatcac accgccgagg cgggctccgg catgcgtgac
      841 accgacactc tgcaccgcat cgacccggcc atcgtcaaga agcaggtcac cgacgccggc
      901 ttcgtcttcg agggcgagag caaggtgctg cgcaaccccg ccgacgacct caagaagctc
      961 gtctttgaca agagcatccg cggccatacc gaccagttca tctacaagtt ccgcaagccg
     1021 gcaaaggcca ggtaggcgcg tcgtggtcgc ggcccgggat ccgtctgacc ccggagcgat
     1081 tccctaaccc actggcgctg aagcttggcg gggcatcgag gggagatgtc cgttaagcgc
     1141 ggatcctcct cgccgccggg cccacagttg cggcaaatcg cccttctgcg gccggcagaa
     1201 ccaatggctc aaggttcctc tgctcatctg tcaagatgaa cgcaggaatg gggagggcgg
     1261 acggagaggg cgaagtccgc gagggcgtgc gatctcccct ccaggccgcg agctggttct
     1321 tcgaaaacgc ccacgacctg ttcggtgtcg tcggcgccga cggacggctg ctgtccgtca
     1381 atcccgcgtg ggagctggtg acgggctggg cccccgacga actcatcggc cggcccctgc
     1441 tcgacatcat gcacgacgat tgccgtgacg aggtgatcga gatggggcgg gcggtcgcgg
     1501 cgcacggctc gacggtcacc cgcatgcaac tgcgcaagaa ggacggcggc tcggtctggc
     1561 tcgaaggcta tgccgcgagc ggccccaacg gcgagatcat gggcacgttg cgcgacgtga
     1621 cagccgagcg gcggcgcgcc gaggagctgg agcacatacg tcacgtgcag ttgcggctgc
     1681 aggaaaccgc cggcgtcggc ctgtggcgct tcgatccaga gaccgagcag ctggactggt
     1741 cggacgaatg gctggcgatg ttcgccgaag ccggcgtgaa agtggccacc gtcgaggact
     1801 tcatggcggt ctgccacccc gacgacgccg agggtgtcgt ggcggccatc gaccgggccg
     1861 tcgagggggc cggaatggtc gccttcaacc atcgcttcca ggcggcgaac gggcgctgga
     1921 tctggattcg cgccaatgtc tgggcggagc gcggcgcgga cggacggcag atcgtccacg
     1981 gcatatctca ggtcaccacc gaactggcgg aagccctgga ggcggtcacg gaagcgcgcc
     2041 gcagcgccga gggccaggcc caccggctga aaatcgcgct tggagctgcg aaagccgcgg
     2101 tcctcgaggt cgacgccgtg acccagcggg tctggtgctc gccggagttc gtggcgctgg
     2161 tcggccgcga gatgaccttc gccgaggcgc tgtcgccggt ctggcccttt atccaccccg
     2221 atgatgcggc gagtgtgctg gccgccgtcg ccgagcggcg ccccggcgaa cgcgccgagc
     2281 cgctggacgc acggatcgtg ctggcgaatg gcgagccgct ctgggcccgg ttcttcctgg
     2341 agatcgagaa cgacgcgaac ggcctccccc accgcgcggt cgtcctggtg atggatatcg
     2401 atgcggccaa gcgtcaggag ctggccctga tcgaggctga acatgccgcg cagatggcgg
     2461 cggaggccaa gtcgcagttc ctggcgaaca tgagccacga gatccgcact ccgatgaacg
     2521 gggtgctggg cgtgcttcat ctgctgaaaa gccagagcct gccggaagcc tcgcgcgcga
     2581 tgatcgatga agccctggcc tgcggcggca tgctgcaggc gctgctcgac gacgtcgtcg
     2641 acttctcgaa gatcgaagcc ggtcggctcg agctcgccaa ggaagccgcc gacccggcgg
     2701 cgatcattga aggcgtcgtc aagatgctcc ggccccaggc cgaggataag ggcctggcgc
     2761 tccgccttga ggcgaaggac ctgccgccct gggtggtcac cgacccggtt cggctgcgcc
     2821 agtgcctgtt caacctgatc ggcaacgccg tgaagtttac cccgggcgga tcggtgaccg
     2881 tccgcgcgct tcggaaggac gccccgacag gccaccgcct ccgtttcgag gtggaggaca
     2941 ccggcatcgg tatcgacgaa caggcgcagg ccaggctgtt tcaccggttc cagcaggcgg
     3001 acgcgacgac gacccggcgc tttggcgggt caggccttgg actggcgatc acccgcaagc
     3061 tggtgaccat gatggagggt gaggtcggcg tcctgtccac tcccggcaag gggtccacct
     3121 tctggttcga gatcgccgcc cccgaggtgg aggctccgcg cgacgacacc gggaccgacg
     3181 acggcctgct ggacggcctg agcgtcctga tcgtcgagga caatgcgacg aaccggatga
     3241 tcgtcaccaa gatgctggaa ggccttggcg cggcggtgga gacggctgag gacggcgagc
     3301 gtggcgtcga agcggccctg ctcggcgcct tcgacctgat cctgatggac attcagatgc
     3361 ccgggatcgt cggcctcgaa gccacccggc agattcggcg gtcgggcgtc tcagccgccc
     3421 ttacgccgat catcgccctg accgccaacg tcctgaccca ccagcgcgag gcctatctgg
     3481 cgtcgggtat ggacggcgtg gtcggcaagc ccgtgtcgcc cggcgcgctg ctgtcggaga
     3541 tcgcccgcgt ggccgcccag gatccccgcg ctgaccaggc tcagctgagc ggctgaccgc
     3601 cgttggcctg gctcggcgcg gcgcgcggga cagggccggg gcatgcggtg taacgaaccg
     3661 ccgtggacga caccgccgac atcgcgaaag ccgccgccgc cctgaaggcg ggccacctgg
     3721 tcatcctgcc gaccgagacg gtctatggcc ttgcggcgga cgccgccaat ccgcgcgccg
     3781 tggcggcggt ctatgaggcc aagggccggc ccagcttcaa cccgctgatc gcccatgtgg
     3841 cggacatcac gaccgcgcgg cggatcgccc gcttcgacga ccgcgccgag gtgttggcgg
     3901 cagcgttctg gccaggaccg ctgacctttg tcctgcgcat cgccgatgag gccgcggtct
     3961 gcgacctggc ccgcgcgggc ctggacaccg tcgccgtccg cgcgccggcc cacccgctgg
     4021 cccatgcgct gctggaggcc ttcggcgggc ccctggtggc gccctctgcc aaccgctcgg
     4081 gccgccccag cccgacgacc ttcgccgacg ccatggaaga gacaggcgcc tcgacggcgg
     4141 cggccctcga cggcggccct tgcccgatcg gcctggagtc cacggtcatc gccctgctgg
     4201 accagccgcg cctgctgcgc cccggcgccg tcacccgagc cgagatcgaa gccctgatcg
     4261 gtcctctgtc cgaagccgag gccgatgcga agcgctcgcc cggccgcctt acccgccact
     4321 acgccccgga cctgccgttg cggctgaatg cggaagagcc gcgggacggc gaggtctggc
     4381 tgggctttgg tcacgcccat caaggagaga ggggcgccga gccgttcaat ctgagccggg
     4441 atggcgatct ggcggaggcc gcggcgaacc tcttcgccta tctgcg
//
LOCUS       DATAJL010000404         1602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57486,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000404 DATAJL010000000
VERSION     DATAJL010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57486"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VHN39_07815"
     CDS             <1..681
                     /locus_tag="VHN39_07815"
                     /inference="COORDINATES: protein motif:HMM:NF012692.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEX2816283.1"
                     /translation="IANDLSVAAWGEREAGAGRGVDDLVVVLAGSGIGAGIILGGKLQ
                     EGASGVAGEFGHILVHPGGRTCGCGQRGCLEAYTGGHNLAAWARDDLRIALAAARAAG
                     QKYPALGRILLEAVGEPDKVTAAAMERAAHEGDELSRRLLDEAGRLLGIALANLVTVL
                     NPALLLLGGGVLIGSPRMMRAATAGIDAHASKASRAALRIGAPALGDHAGVVGAALLA
                     RASLAAAA"
     gene            complement(701..1477)
                     /locus_tag="VHN39_07820"
     CDS             complement(701..1477)
                     /locus_tag="VHN39_07820"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2816284.1"
                     /translation="MGQAASRVALPLGVALGLHLLAGLILFRLAVILPPPPIPKTMVQ
                     FDVVVKAVEKPPEPVKAPEPPKPVPLKLTRAPRVIPRNLPPPIAAPLPQTNAPPPPTH
                     EAPSPAQAPVIVTGITLESTSQGGGMAVGTGNTLLGTPGDKATAPAQVKPYKAEQYAA
                     AAQVTELPRVLNRDGVNLRKYYPPEAMRAGFEGDVVLRLLIDSDGSIVKVDVISDPGQ
                     GLGAAARKAIVSEYRFSPAKVNGTAVATTVPFTMHFTISD"
BASE COUNT          244 a          501 c          575 g          282 t
ORIGIN      
        1 atcgcgaacg atctgtccgt cgctgcctgg ggcgagcgcg aggctggcgc ggggcgcggc
       61 gtggacgatc tggtggtggt cctggccggc agcggcatcg gcgcggggat cattctcggc
      121 ggcaagctgc aagagggcgc gtcgggcgtc gccggtgagt tcggacatat cctcgtgcat
      181 ccgggcgggc gcacctgcgg ctgcggacag cgcggatgtc tagaggccta taccggcggg
      241 cataacctcg cggcctgggc gcgagacgat ctgcgcattg ctttggccgc ggcgcgggcg
      301 gcggggcaga aatatccagc gctgggacgc atcttgctcg aagcagtcgg cgagcccgac
      361 aaagtcaccg ctgcagcaat ggaacgcgcg gcgcacgagg gcgacgagct ctctcggcgt
      421 ttattggacg aagccggtcg gctgctgggc atcgcactgg caaacctggt taccgtcttg
      481 aatccagcgt tgttattgct cggcggtggc gtgttgatcg gctcaccgcg aatgatgcgc
      541 gccgcgaccg ccggcatcga cgcccacgcc tcaaaggcct cccgagccgc cttacggatt
      601 ggcgctccag ctttgggcga ccacgccgga gtcgtcggcg ccgcactcct ggcccgcgcc
      661 tccctggccg ccgcggcgtg accaggcccg gcggcggcat tcaatcggag atggtgaagt
      721 gcatggtgaa gggcacggtg gtggcgaccg cggtgccgtt cactttcgcc ggactgaagc
      781 ggtattcgga gacgatggcc ttgcgggcgg cggcgcccag gccctggccg gggtcgctga
      841 tgacgtccac tttgacgatc gagccgtcgg agtcgatcag gagccgcagc acgacgtcgc
      901 cctcgaagcc tgcccgcatg gcctcgggcg ggtagtactt tcgcaggttc actccgtcgc
      961 ggttgagcac tcgcggcagc tcggtgactt gagcggcagc cgcgtattgc tcggctttgt
     1021 aaggtttgac ctgcgcgggc gctgtagcct tgtcgcccgg cgtcccgagc agggtattcc
     1081 cggtgccgac ggccatgccg ccgccctggg aggtgctctc caaggtaatg ccggtgacga
     1141 tcaccggcgc ctgagcaggc gacggcgctt cgtgggttgg cggcggcggc gcattggtct
     1201 gcggcaatgg agccgcgatt ggcggcggca agttgcgcgg tatcactcgc ggcgcgcgag
     1261 tcagcttcaa gggaacaggc tttggcggct cgggggcttt gacgggttcc ggcggcttct
     1321 ccaccgcttt gaccactaca tcgaattgca ccatcgtctt gggaatcggc ggcggcggta
     1381 gaatgaccgc caggcggaag aggatcaaac cggccagcaa atgcaggcca agcgcgaccc
     1441 cgagcggcag cgcaactctg gaagcggcct gccccaatcg ggttattcct gcttctcgat
     1501 ttgaatcgcg aacttcaaga cgccggcgcc cttcaggacg tccaatagat gcgtcaccat
     1561 cccgtgggtg gcattcttgt ccgcgccgac gatggcctgg ac
//
LOCUS       DATAJL010000405         2593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45818,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000405 DATAJL010000000
VERSION     DATAJL010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45818"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..779
                     /locus_tag="VHN39_07825"
     CDS             <1..779
                     /locus_tag="VHN39_07825"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX2816285.1"
                     /translation="WKMKSRKRSSSGAPGAPLEERFLDFIFQPIAGPDGESVAVFVEG
                     SDVTDRVLGDRQQKLLLDELNHRVKNTLSTVQAIADQTLRTTADPARFREAFEPRLMA
                     LSATHNLLTATNWKGADLGDVARLEFRPYGPERYRLTGPAVALSPSQALALGMVFHEL
                     ATNAAKYGALAHGDGQVDVVWLVRKLGERADLEIDWMERDGPPVIPPSRSGFGSRLIE
                     RSLQGQLGGDAALDYAPGGVRCHIRVPLDPSPDAPTDAER"
     gene            complement(776..2095)
                     /locus_tag="VHN39_07830"
     CDS             complement(776..2095)
                     /locus_tag="VHN39_07830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518273.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004180 - carboxypeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEX2816286.1"
                     /translation="MPTRVIRSVLFAGVAVLLATSAHAADVARQKAEIDAGLDKAYPH
                     LDALYKDIHAHPELGFQEVETAAKLAKEMRALGFEVTEHVGKAGIVAIFKNGPGPTVM
                     VRTELDALPMEEKTGLPYASHVVTTWQGKPTPAAHSCGHDIHMAAWVGAAQALVAMKA
                     QWRGTLMFIGQPSEETVGGAKAMIADGLFTRFPKPDIGFAQHVGPGPTLGVFYRAGAN
                     TSSADGFEITFQGRGAHGSRPQLSIDPVMEAARFTVEVQTVVSREKDPAAFGVLGVGS
                     IQSGSAGNIIPDQAILRGTIRSYDDATRQLLKEGLVRTARAVAEMARAPAPSVVFDAG
                     ASAVINDAAVTARTAPIFKAAFGPHAIEATSPNSASEDYSEFIIAGVPSLYWSLGGYD
                     PKVIADYRARGQEPPGNHTPQFAPVPEPTIRTGVEAMTLAVLNVMGS"
     gene            complement(2142..>2593)
                     /locus_tag="VHN39_07835"
     CDS             complement(2142..>2593)
                     /locus_tag="VHN39_07835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816287.1"
                     /translation="MQDPKATADSIRPMAAKARDAMLASSGKPATAAQLEPQMKAMSK
                     DAATVHMVSEWGALSDSTVVARALYDDFTLDLRAGLPAISTPIVLVYPDDVPIGMPAG
                     MMEKIYPALYAAAPTVKLTLVANSLHFVMLDQPEAFNAALDAFLALK"
BASE COUNT          374 a          853 c          960 g          406 t
ORIGIN      
        1 gctggaagat gaagtcgagg aagcgttcct ccagcggcgc gccgggcgcg ccgctggagg
       61 aacgcttcct cgacttcatc ttccagccca tcgccgggcc ggacggggag tccgtggctg
      121 tgttcgtgga gggcagcgac gtcaccgacc gggtgctggg cgaccgccag cagaagctcc
      181 tgctggacga gctgaaccac cgcgtgaaga acacgctctc cacggtgcag gcgatcgccg
      241 accagaccct gcgcaccacg gccgacccgg cgcgcttccg cgaggccttc gagccacggc
      301 tgatggcgct gtcggcgacg cacaacctgc tcaccgccac caactggaag ggcgccgacc
      361 tgggcgacgt agcccggctg gaattccgcc cctatggccc ggagcgctac cggctgaccg
      421 gtcctgctgt ggcgctgtcg ccctcccagg cgctcgcgct gggcatggtg ttccacgagc
      481 tggcgaccaa tgcggccaag tacggcgcgc tggcccatgg cgacggccag gtggatgtcg
      541 tctggcttgt gcgcaagctg ggcgagcggg cggacctgga gatcgactgg atggagcgcg
      601 atggaccgcc ggtgatcccg ccgagccgaa gcgggttcgg ctcacggctg atcgagcgca
      661 gcctgcaggg ccagctgggc ggggacgcgg cgctggacta cgctcccggc ggggtgcgct
      721 gccacatccg ggtgccgctg gatccgtccc ccgatgcgcc gacggacgcc gagcgctagg
      781 accccatcac gttcagcacc gccagcgtca tggcctccac gccggtgcgg atggtcggct
      841 ccgggaccgg ggcgaactgg ggggtgtggt tgccgggggg ctcctgaccc ctggcgcgat
      901 agtcggcgat gaccttggga tcgtagccgc ccaggctcca gtagagcgag ggcaccccgg
      961 cgatgatgaa ttccgaatag tcctcgctgg ccgagttcgg gctggtcgcc tcgatggcgt
     1021 ggggtccgaa ggcggccttg aagatgggcg cggtgcgcgc ggtgacggcc gcgtcgttga
     1081 tcaccgccga ggcgccggcg tcgaagacga cgctcggggc cggcgcgcgg gccatctcgg
     1141 ccacggccct ggcggtgcgg accaggccct ccttcaggag ctggcgggtc gcgtcgtcat
     1201 agctgcggat ggtgccgcgc aggatcgcct ggtcggggat gatgttgccg gcgctgcccg
     1261 actggatcga acccacgccc agcacgccga acgccgccgg gtccttctcg cggctcacca
     1321 ccgtctgcac ctcgacggtg aagcgggcgg cttccatgac cgggtcgatg ctgagctgcg
     1381 ggcgcgagcc gtgggcgccg cggccctgga aggtgatctc gaaaccgtcg gcgctcgagg
     1441 tgttggcgcc ggcccggtag aagacgccca gcgtcggccc cggccccacg tgctgcgcga
     1501 agccgatgtc gggcttcgga aaacgcgtga agaggccgtc ggcgatcatc gccttggcgc
     1561 cgccgaccgt ctcctcgctg ggttggccga tgaacatcag cgtgccgcgc cactgggcct
     1621 tcatggccac cagcgcctgg gcggcgccga cccaggcggc catgtggatg tcgtggccgc
     1681 agctgtgggc ggcgggcgtc ggcttgccct gccaggtggt gaccacgtgg ctggcgtagg
     1741 gcaggccggt cttctcctcc atgggcagcg cgtcgagctc ggtgcggacc atgaccgtcg
     1801 ggccggggcc gttcttgaag atcgccacga tgccggcctt gccaacatgc tctgtgacct
     1861 cgaagcccag cgcgcgcatt tccttcgcca gcttggcggc ggtctcgacc tcctggaaac
     1921 cgagctcggg gtgggcgtgg atgtccttgt agagggcgtc gaggtgcgga taggccttgt
     1981 ccagtccggc gtcgatctcg gccttctgcc tggcgacgtc agcggcatga gccgatgtgg
     2041 ccagcagcac cgcaacgccg gcgaaaagga cggatcgaat gacgcgggtc ggcatgatga
     2101 ggctcacctg agttgggcaa gcctcaccat agccgggccc gctacttcag cgccagaaag
     2161 gcgtcgaggg cggcgttgaa cgcctcaggc tggtcgagca tcacgaaatg cagggagttg
     2221 gcgaccaggg tcagcttcac ggtgggggcc gcagcgtaca gcgccggata aatcttctcc
     2281 atcatgccgg ccggcatgcc gatcgggaca tcgtcgggat agaccaggac gatgggcgta
     2341 ctgatcgccg gcaggccggc gcgcaagtcg agggtgaagt cgtcgtagag cgcgcgcgcc
     2401 acgaccgtgc tgtcgctgag cgccccccat tcggagacca tgtggacggt ggcggcgtcc
     2461 ttcgacatgg ccttcatctg cggctccagc tgggcagcgg tggccggctt gccgctggag
     2521 gccagcatgg cgtcgcgggc cttggcggcc atgggccgga tgctgtcggc ggtcgccttg
     2581 ggatcctgca tgc
//
LOCUS       DATAJL010000406         4064 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_7256,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000406 DATAJL010000000
VERSION     DATAJL010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4064
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7256"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1621
                     /locus_tag="VHN39_07840"
     CDS             <1..1621
                     /locus_tag="VHN39_07840"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2816288.1"
                     /translation="GKGGAKKSAAVPGSTEHGPGVPEPTKVVQTKAGPVQGLIDHGIH
                     SFKGIRYGKAPIGKLRFMPPQPAEAWTAIYDATDYGAPAMQLASGTTVDTTNDFGMQM
                     HRVFTTPSDIKIQNEDCLFLNVWTPGVDAKKRPVMVWIHGGGFAYGSGAQPIYQGDGL
                     ARFGDVVVVSVNHRLNVFGYLNLAEAMGSDYASSGTVGMQDLVLSLQWIRDNAAAFGG
                     DPGNVMIMGQSGGGQKVSILCAMPSAKGLFHKAAIQSGPGLAVGRPGPAAAGAKRLLD
                     ALGVKPGDRAALEAVPAPAIIAAVAKLGGGPGGGGPGGGPIVDGIAIPRDPFTPGAPD
                     VSDDVPILVGWAKDEWTIFTAGEPWFGKLTEAELADRVKPMGANGAKLLAAIRKAYPT
                     YSPTYLWVQMISVRVMQGSETLAERKAAKGRAPAYVYMTSWETPASGGIFKTPHTMEI
                     PFMLYNFDRVRAFVGPGPEPKHMADQIAGAWVAFARTGKPDHAGIPHWPAYNTQARPV
                     MDFNLKSRVVNDPLPEVRQALNGMTAPPPRG"
     gene            1636..3273
                     /locus_tag="VHN39_07845"
     CDS             1636..3273
                     /locus_tag="VHN39_07845"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2816289.1"
                     /translation="MTEQTSRRGFLAGAAGLGAGLGAAGLIARPARAYIASGVTPPVS
                     TTNGPVIGLMEEGVPTFKGLRYGAPPVGALRWAPPAKPTAWKDPAAAIAFGPAAMQYA
                     SGGGAARYPGGVGPALNQLMNSGEDAIRQSEDCLFLNLWTPALDNKARPVMVWWHGGG
                     FNYGSGNWPVYDGHNLARHHDVVLVSVTHRLNAFGYLELAELGGDPASGNVGMLDLTA
                     SLQWVKDNIAAFGGDPGNVTVFGQSGGGAKVATSLAMPSMTGLRHKGIVESGAALRSA
                     EMASATDQARQLMKALEVADLAGLRRVPAGAIIAAAKTMGAIGGRWGPVMDGVALKGH
                     PFDPVANPIGRDIPVMVGCTADEQTLYNVGFDWWGKQTEPQMVERLKAQYGPITEPLV
                     AAAKARYPNETPSYLYVDITSKAAFVSSAALAERKSAQPAPVYMYVWEGRTAVDGGMM
                     RAPHTTEIPFAFDNVALGPMLLGTAPGTVALGKQASAGWTSFARHGDPNDAKSGLPHW
                     PRYDAASRATMIFNTRSRIENAPYEAFRKLMPPLRPA"
     gene            complement(3458..>4064)
                     /locus_tag="VHN39_07850"
     CDS             complement(3458..>4064)
                     /locus_tag="VHN39_07850"
                     /inference="COORDINATES: protein motif:HMM:NF044908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816290.1"
                     /translation="YRLPDLSPVEVVTTVVRAGNRIRVIDAEFISGGVSAGRATCQLL
                     KRTENPAGNVWKPESWVVPAPADIAPPTDGRSGMGGMWATRRIEGDFGTVGQKRIWMS
                     EVRELVAGRALTPFVRVAVSADFASPFANAGDAGLEFINSDVTVYLHREPATEWIGYE
                     VVNHGATGGVAIAECFLYDERGPIGSASCAALAQRRMAPRG"
BASE COUNT          643 a         1523 c         1334 g          564 t
ORIGIN      
        1 gggcaagggt ggggcgaaga aatccgccgc cgtcccgggc tccaccgagc acggcccggg
       61 cgtgcctgag cccaccaaag tcgtgcagac caaggccggc ccggtgcagg ggctgatcga
      121 tcacggcatc cacagcttca agggcatccg ctacggcaag gcgccgatcg gcaagctgcg
      181 cttcatgccg ccacagccgg ccgaggcctg gaccgccatc tacgacgcca ccgactacgg
      241 cgccccggcc atgcagctcg ccagcggcac gaccgtcgac accaccaacg acttcggcat
      301 gcagatgcac cgggtgttca cgacgccctc ggacatcaag atccagaacg aggactgcct
      361 gttcctcaac gtctggaccc ccggcgtgga cgccaagaag cgcccggtca tggtctggat
      421 ccacggcggc ggcttcgcct atggctccgg cgcccagcct atctaccagg gtgacggcct
      481 ggccaggttc ggcgacgtgg tcgtggtcag cgtgaaccat cgcctcaacg tcttcggcta
      541 cctgaacctg gccgaggcca tggggtccga ctacgcctcc tccggcacgg tcggcatgca
      601 ggatctggtg ctgtcgctgc agtggatccg cgacaatgcc gcagccttcg gcggcgaccc
      661 gggcaacgtg atgatcatgg gccagtcggg gggcggccag aaggtctcga tcctctgcgc
      721 catgccctca gccaaggggc tcttccacaa ggccgcgatc cagagcgggc cgggcctggc
      781 cgtgggccgt ccgggtcccg ccgcggccgg cgccaagcgg ctgctggatg cgctgggtgt
      841 caaacccggc gaccgcgcgg cgctggaggc cgtcccggcg ccggcgatca tcgccgcggt
      901 cgccaagctg ggcggcggac cgggcggcgg cggccccggc ggcggtccga tcgtcgacgg
      961 gatcgccatc ccccgcgacc ccttcacgcc aggtgcgccg gacgtcagcg acgacgtgcc
     1021 gatcctggtg ggctgggcca aggacgagtg gaccatcttc accgccggcg agccctggtt
     1081 cggcaaactg accgaggctg agctggccga ccgcgtgaaa cccatgggcg cgaatggcgc
     1141 caagctgctg gccgccatcc gcaaggccta tcccacctac agcccgacct acctgtgggt
     1201 tcagatgatc agcgtgcgcg tcatgcaggg ctccgagacg ctggccgaac gcaaggccgc
     1261 caagggccgc gcgccggcct acgtctacat gaccagctgg gagaccccgg cctcgggcgg
     1321 catcttcaag acgccgcaca ccatggaaat ccccttcatg ctctacaact tcgaccgcgt
     1381 gcgggccttc gtgggaccgg ggccggagcc caagcacatg gccgaccaga tcgccggcgc
     1441 ctgggtggcc ttcgcccgca ccggcaagcc ggaccacgcc ggcattccgc attggccggc
     1501 ctacaacacc caggcccggc ccgtgatgga cttcaacctg aagagccgcg tcgtgaacga
     1561 tcccctgccg gaggtccgcc aggcgctgaa cggcatgacc gcgcccccgc cgcgcggctg
     1621 aacggagcaa agaccatgac cgaacagacc tcccgccgcg gcttcctggc cggagccgcc
     1681 ggactaggcg cgggcctggg cgccgcgggc ctcatcgccc gccccgcccg cgcctatatc
     1741 gccagcggcg tcacgccgcc cgtctcaacc accaacggcc cggtcatcgg gctgatggaa
     1801 gagggcgtcc ccaccttcaa gggcctgcgc tatggcgcgc cgcccgtggg cgcgcttcgc
     1861 tgggcgccgc cggcgaaacc gaccgcctgg aaggacccgg ccgccgccat cgccttcggt
     1921 cccgcggcca tgcagtacgc ttcaggcggg ggcgcggccc gataccccgg cggcgtcggc
     1981 ccggcgctca accagctgat gaactccggc gaggacgcca tccgccagag cgaggactgc
     2041 ctgttcctca acctctggac cccggcgctc gacaacaagg cccggccggt catggtctgg
     2101 tggcacggcg gcggcttcaa ctacggcagc ggcaactggc cagtctacga cggccacaac
     2161 ctggcccggc accatgacgt ggtcctggtc agcgtcaccc atcggctgaa tgcgttcggc
     2221 tatctcgagc tcgccgagct gggcggcgat ccggcctccg gcaacgtcgg catgctggac
     2281 ctgaccgcgt ccctgcagtg ggtgaaggac aatatcgccg ccttcggagg cgatcccggc
     2341 aacgtcaccg tcttcggcca gtccggcggc ggggcgaagg tcgccaccag cctggccatg
     2401 ccgtcgatga ccggcctgcg ccacaagggg atcgtcgaaa gcggcgcggc cctgcgctcg
     2461 gccgagatgg cctccgccac cgaccaggcg cgccagctga tgaaggccct cgaggtcgcc
     2521 gacctggcgg gcctgcgcag ggttccggcg ggcgccatca tcgccgcggc caagaccatg
     2581 ggcgccatcg gcggccgctg ggggccggtg atggacgggg tggcgctcaa ggggcatccc
     2641 ttcgatcccg tcgccaaccc gatcggccgc gacatccccg tcatggtcgg ctgcacggcc
     2701 gacgaacaga ccctctacaa cgtcggcttc gactggtggg gcaagcagac cgagccgcag
     2761 atggtggagc ggctgaaggc ccagtacggc ccgatcaccg agccgctggt cgccgccgcc
     2821 aaggccagat acccgaacga gacccccagc tacctctatg tggacatcac ctccaaggcg
     2881 gccttcgtct cctccgcggc gctggctgag cgcaagtccg cccagcccgc gccggtctac
     2941 atgtatgtct gggagggccg cacggccgtt gacggcggca tgatgcgcgc gccccacacc
     3001 accgagatcc ccttcgcctt cgacaatgtc gcgttggggc cgatgctgct ggggaccgcg
     3061 cccgggaccg tggcgctggg caaacaggcc agcgccggct ggacgtcctt cgcccgccac
     3121 ggcgacccca atgatgcgaa gtccggcctg ccgcactggc cgcgctacga cgccgcgagc
     3181 cgcgcgacca tgatcttcaa caccaggagc cggatcgaaa acgcccccta cgaagcgttc
     3241 cgcaagctga tgccgccgct caggccggcc taggtttggg cctggcagca ggtgcggcag
     3301 ggcgccgcgc gtcaggccgc catctatcgg cgagtcggcg cgagcatcat cctaaggttg
     3361 ttctgtgctt tcaaccacac acagaacaaa gagtgggtcg cttcgtgcgt tcattcgaag
     3421 cggccccctc ccctttttcc ctctccgctc cccgttctca gcctcttggg gccatccgcc
     3481 gctgcgccag cgccgcgcag gacgccgagc cgatgggacc gcgctcgtcg tagaggaagc
     3541 actccgcgat cgccacgccg ccggtggccc catggttgac cacctcatag ccgatccact
     3601 ccgtcgccgg ctcgcggtgg agatagaccg tcacgtcgga gttgatgaac tccaggcccg
     3661 cgtcgccggc attggcgaag gggctcgcga agtccgccga gaccgcgacc cgcacgaagg
     3721 gcgtcagcgc gcgcccggcc accagctcgc gcacctcgct catccagatg cgcttctggc
     3781 ccaccgttcc gaagtcgcct tcgatccgtc gcgtcgccca catgccgccc atgcccgagc
     3841 gcccgtcggt gggcggggcg atatcggccg gcgccggcac gacccagctc tccggcttcc
     3901 agacattgcc cgccgggttc tcggtgcgct tcagcaactg gcaggtcgcc cgcccggcgc
     3961 tgaccccgcc ggagatgaac tccgcgtcga tcacccggat tcgattgccg gcgcgcacca
     4021 ccgtcgtgac cacctccacc ggcgacaggt ccggcagccg gtac
//
LOCUS       DATAJL010000407         2080 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20068,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000407 DATAJL010000000
VERSION     DATAJL010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20068"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..1643
                     /locus_tag="VHN39_07855"
     CDS             201..1643
                     /locus_tag="VHN39_07855"
                     /inference="COORDINATES: protein motif:HMM:NF021645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoPQ-activated protein PqaA family protein"
                     /protein_id="HEX2816291.1"
                     /translation="MKFLKLLGGALAVAVLATPLSVSGPALANPKNALDAYVAKPDPA
                     FAWKVVGPVSGPGYHGAVLELTSQTWLTDKQVDKPVWKHWLTVIVPDKLDHDKLHHDN
                     AFMFITGGSNKDAAPAKATERWAKMAVETRSVVTELDDVPNQPLRFAEDPKPRSEDEI
                     IAYQQAKFAKDRNPLDLVRLPMVKSGTQAMTAIQQYLASDAGGKLKIDGFVVSGGSKR
                     AWVTWLVGAIDRRVVAIVPIVINVLDVDATAKHHWEAMGYFSPALKDYVENHLIPEMI
                     GSPGLTEVNRIEDPLNYRDRPSMKMPKYVINAVGDEYFPPDNTRFSYHLLPEVKRLRM
                     IPNSKHSTAGTDINESMTAFYDAVLNHRAIPSYSWTVRPDGAIVVRSATKPAEVKLWQ
                     GNDPKARDFRVDTIGKAFTATDLTRQKDGTWVGKVEKPAAGWTAYFVELTYPSASPYP
                     FKFTTEVSVIPDTLPYKWKDARPIIAPDGK"
     gene            complement(1621..>2080)
                     /locus_tag="VHN39_07860"
     CDS             complement(1621..>2080)
                     /locus_tag="VHN39_07860"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEX2816292.1"
                     /translation="PHFTALTALGLAAAFFVFALGEELGWSGYAIGPLQARWGALRAS
                     LVLGVVWASVHYVPLVEAHRSLAWIAWWTLGTVSTRVIMVWLFCRTGRSVFGASLFHM
                     SINLAWQLFPVSGSYFDPRIHGLIMALVAVVLVVAWPSAKAAAPTSRPAR"
BASE COUNT          402 a          702 c          680 g          296 t
ORIGIN      
        1 ctcccagcgc aactcgcggt tcaaccggat caccagccgc tgcaggcggt gcgccagatc
       61 ggcttcttcc ggacgcacgt tcagccctat ctcggatatt gttcggcaag ctaacaatct
      121 gccgcgcgct tggccctgtc aacgaccggc gccatggtgg actcaaggac cgcgcggacg
      181 gtccacccgg gaggctgtcg atgaaattcc tgaagctgtt gggcggcgct ctcgccgttg
      241 ccgtgctggc gacccccctg tcggtgtctg ggccggccct ggccaatccg aagaacgcgc
      301 tcgacgccta tgtggccaag cccgacccgg ccttcgcctg gaaggtcgtc gggccggtgt
      361 ccgggccggg ctaccacggc gccgtgctgg agctgacctc gcagacctgg ctcaccgaca
      421 agcaggtgga caagcccgtc tggaagcact ggctgacggt gatcgttccg gacaagctcg
      481 atcacgacaa actccaccac gacaacgcct tcatgttcat caccggcggc tccaacaagg
      541 acgccgcccc cgccaaggcc accgagcgct gggccaagat ggcggtggag acgcggtccg
      601 tcgtgaccga gctggacgac gtgccgaacc agccgctgcg cttcgccgag gatccgaagc
      661 cgcggagcga ggacgagatc atcgcctacc agcaggcgaa gttcgccaag gaccgcaatc
      721 cgctggacct ggtgcgcctg ccgatggtca agagcgggac ccaggcgatg accgccatcc
      781 agcagtacct ggccagcgac gccggcggga agctgaagat cgacggcttc gtggtctccg
      841 gcggctccaa gcgggcctgg gtgacctggc tggtgggcgc catcgaccgg cgcgtggtgg
      901 cgatcgtccc gatcgtgatc aacgtgctcg acgtggacgc cacggccaag caccactggg
      961 aggcgatggg ctatttctcg ccggccctga aggactatgt cgagaaccac ctgatccccg
     1021 agatgatcgg ctcgccgggc ctgaccgagg tcaaccgcat cgaggacccg ctgaactacc
     1081 gcgaccggcc gtcgatgaag atgcccaagt acgtgatcaa cgcggtgggc gacgagtact
     1141 tcccgccgga caacacccgg ttctcctacc acctgctgcc ggaagtgaag cggttgcgga
     1201 tgatccccaa ttccaagcac tcgacggccg ggaccgacat caacgagagc atgaccgcct
     1261 tctatgacgc ggtgctgaac caccgggcga tccccagcta ttcgtggacc gtgcgcccgg
     1321 acggggcgat cgtggtcagg tcggcgacga agcctgccga agtgaagctc tggcagggca
     1381 acgatcccaa ggcccgcgac ttccgtgtcg acaccatcgg caaggcgttc acggcgaccg
     1441 acctgacgcg acaaaaggac gggacctggg tcggcaaggt tgaaaaaccc gccgccggct
     1501 ggaccgccta tttcgtcgag ctgacctatc cgagcgcctc gccctatccg ttcaagttca
     1561 cgacggaagt ctcggtgatc cccgacaccc tgccctacaa gtggaaggac gcccgcccga
     1621 tcatcgcgcc ggacgggaag taggcgcggc cgccttcgcg gagggccagg cgaccaccag
     1681 gaccacggcc accagcgcca tgatgaggcc gtggatgcgc ggatcgaagt acgagccgct
     1741 gaccgggaac agctgccagg cgagattgat cgacatgtgg aagaggctgg cgccaaacac
     1801 gctccggcct gtgcggcaga agagccagac catgatcacc cgcgtcgaca cggtgccgag
     1861 cgtccaccag gctatccagg ccagggagcg gtgcgcctcg accagaggta cgtagtggac
     1921 tgacgcccag accacgccca gcaccaggct ggcccttagc gcaccccatc gcgcctgaag
     1981 gggcccgatg gcgtagccgg accagccgag ttcctcgccg agggcgaaga cgaagaaggc
     2041 ggcggccagg ccgagcgcgg tcagggcggt gaaatgcggt
//
LOCUS       DATAJL010000408         1996 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33218,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000408 DATAJL010000000
VERSION     DATAJL010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1996
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33218"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1591)
                     /gene="flgK"
                     /locus_tag="VHN39_07865"
     CDS             complement(<1..1591)
                     /gene="flgK"
                     /locus_tag="VHN39_07865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEX2816293.1"
                     /translation="MTLTIALQSAASGLQAAQAGLAAVSDNIANVNTPGYVRKQIVQQ
                     QLVVDGRGAGVDVSGVQRVTSQYLQSASMTAGSDSSRYAAYAQYLDSAQSLFGDPSGG
                     DYFFNLPDNLSANFASAADDPSSPLLRSQAVSTLSNFLGQADRINTQVAALSKTVDGQ
                     VSNDVTQVNSLLSQIDKLNTDIARGKISGSDSTGSENIQSQLLNQLSGLMNVRVTARA
                     QGGVDIRSTEGIALVGNGASTLTYNSSGTTPGYITATTPGASAGPTPITLSSGEIRGL
                     LDLRNTKLPGISDQMGEYVSRTAQQLNAASNASTASPPPTTLTGRDTGLDLPTAASGF
                     SGQSTVAITNAAGVVQKTVAIDFTAGTMSVNGGAGAAFTPATFLTQLNAGLGASGTAS
                     FAGGALSISAAGGNGVAIDEGTSQKAGQGFSQFFGLNDIVSSTGVSTFDTGLSAGDAN
                     GFTPGDQMTLRVSTPGGNPIRDVVITVPPAGSPLMSDLVNTLNSAGSGVGLYGSFTLD
                     AQGGLTFTGTAPQNAQLSVVAD"
BASE COUNT          297 a          598 c          765 g          336 t
ORIGIN      
        1 tgtcggcgac caccgagagc tgggcgttct gcggggcggt cccggtgaag gtcagcccgc
       61 cctgggcgtc gagcgtgaag ctgccgtaga ggccgacccc ggatccggcg ctgttcaggg
      121 tgttgaccag gtcgctcatg agcgggctgc ccgccggcgg cacggtgatg accacgtcgc
      181 ggatcgggtt gccgccgggg gtcgagaccc gcagcgtcat ctgatcgccg ggggtgaagc
      241 cgttggcgtc gcccgcggag aggccggtgt cgaaggtcga gacgccggtc gaactgacga
      301 tgtcgttcag gccgaagaac tgcgagaacc cctggccggc cttctgtgac gtgccctcgt
      361 cgatggcgac gccattgccg ccggcggcgg agatcgagag cgcgccgccc gcgaagctgg
      421 ccgtgcccga cgcccccagg ccggcgttga gctgggtcag gaaggtggcc ggggtgaagg
      481 ccgcgcctgc cccgccgttg acgctcatgg tcccggcggt gaagtcgatg gccacggtct
      541 tctgcacgac gccggcggcg ttggtgatcg ccacggtcga ctggccggag aagccgctgg
      601 cggcggtcgg caggtcgagg ccggtgtcgc ggccggtgag ggtggtgggc ggcggagagg
      661 cggtggaggc gttcgacgcc gcgttcagct gctgggccgt gcgtgaaacg tactcgccca
      721 tctgatcgga tatccccggc agcttggtgt tccgcaggtc caggaggccg cggatctccc
      781 cgctggagag cgtgatcggg gtcggaccgg ccgaggcgcc cggggtggtg gcggtgatgt
      841 agccaggcgt ggtgccgctg gaattgtagg tgagcgtcga ggcgccgttg ccgaccagcg
      901 cgatgccctc ggtcgagcgg atatcgacgc cgccctgcgc acgcgcggtc acgcgcacgt
      961 tcatcaggcc agagagctgg ttgagcagct ggctctggat gttctccgag ccggtggaat
     1021 cagagccgct gatcttgccg cgcgcgatgt cggtgttcag cttgtcgatc tgcgagagca
     1081 ggctgttgac ctgggtgacg tcgttggaga cctgaccgtc gaccgtcttg gagagcgcgg
     1141 cgacctgggt gttgatccgg tcagcctggc ccaggaagtt ggagagcgtg ctcaccgcct
     1201 ggctgcgcag caggggggag gatggatcgt ccgcggcgct ggcgaagttg gcggagaggt
     1261 tgtccggcag attgaagaag tagtcgccgc ccgacgggtc accgaacagc gactgggcgc
     1321 tgtccaggta ctgggcgtag gcggcgtagc ggctggagtc ggagccggcc gtcatgctgg
     1381 ccgactgcag gtactggctg gtgacgcgct ggacgccgga aacgtcgacc ccggcgccgc
     1441 ggccgtccac caccagctgc tgctggacga tctgcttgcg gacgtagcca ggcgtgttga
     1501 cgttggcgat gttgtcggac accgcggcca ggccggcctg ggccgcctgc aatccggaag
     1561 ccgccgactg aagggcgatc gtgagggtca tgcccctaag gcctccgccc ggcaaaggct
     1621 gacgcgcggc tcggcggatt ctgccggggt tgggcatgac gcccacgcgt aaggccggga
     1681 aatcttgttt gttttcaaca tggtccctct ctggggccgg tgagttcgta aatgagagcg
     1741 caagaccggc gccagttctg agcggtgctg aaatgcccgc gccacgcgcg cgagggctgc
     1801 tggcggtgcg gcgggccagg cggcaggaaa cgccccatct ggcgcggatc gcccggcaaa
     1861 ttccgctcta aagagggggc atggcatcgc cttgaaacgg tgtttccttc tttgaaaaca
     1921 acgatttgat gagttggcgc aaaggttgcg tcaggtcgtc cgaatgatcc ccgacgcagc
     1981 acgcgtcccg accatc
//
LOCUS       DATAJL010000409         4073 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20092,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000409 DATAJL010000000
VERSION     DATAJL010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20092"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            37..681
                     /locus_tag="VHN39_07870"
     CDS             37..681
                     /locus_tag="VHN39_07870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylesterase"
                     /protein_id="HEX2816294.1"
                     /translation="MADTRPPSISRRTLIAAGLLALPARALAARGHVVTILGDSITAG
                     LGLPANFALPVQLHLALEKLGVHNVVRGAGVSGDTSGDGAARMDFSVQPDTQVVVVAL
                     GGNDLLQGVDTKTTKANLDKILTRLKARHMGVVLAGLHAPDEIGAGYARDFNAVFPSL
                     AKAHRVALYPDLLAGVSRNGALNQGDAIHPNAQGAEIIATGLAPLVARELKKRP"
     gene            complement(678..3767)
                     /locus_tag="VHN39_07875"
     CDS             complement(678..3767)
                     /locus_tag="VHN39_07875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2816295.1"
                     /translation="MLSAIVGWTLNRPRLMVAAAILLLIYGGIVLGRAKLDVFPDFVP
                     AQVEVQTDAPGLTAEQVEQLVTRPVEQSINGSAGVASIRSQSTAGLSTITVNFAQGSE
                     PFHDRQVVSEALNEVDPLPAGVTPPRVTPLTSSTMDLLKVGFTSDKLTPMQLRDLVDW
                     TVRPQILQADGVARATVYGGEVRRIEVRVRPAALAARGLGLADVLAAVNASTGVSGAG
                     HIDTPQQRVLIESHGQVQTAADVAAAPLPTVDGAAPARIGDIAEVVDGAGPLDGDALI
                     MGRPGVLLSISSQYGANTLDATRSVEKALADMAPALKAQGVTINTGLHRPANFITSAL
                     KGIGDDLAIGAVLIALVLFAFMRDVRTVLIAFVSIPLALLTAVIVLDRMGSTLNTMTL
                     GGLAVALGVVVDDAVIGTENIVKRMRTAPSGAQARDVILAASVEVRAPVVYATLMLAL
                     VLLPVLLLHGLQGSFFSPLAASFIIATLASLAVAVVITPPLALLLLQRANLKIEPAFL
                     RHSKHGHERLLLRAIAAPRWSLAASVIAVVITVAGFMLFDSELLPSFRESHFVLGVAG
                     PPGTSLAVMRDYGTKISKDILAIDGVADIEQQLGRSQGGEDAFGTERSEFHVELKPGL
                     SGHRQDEIQEGIHKVLDSYPGLTTEVLTFLGDRIGESLSGETAALVVGVFGADLDTLD
                     RVAGQVAAVMATTPGAVDVKVQTPPKTPVVRVDLDFAALARFGIAPADALAAVGAAYQ
                     GATAAKIFQQNRTIDIAVTTPPDLKRDPENVGDLLIRSATGTAVPLRSIAKVYLTEAR
                     TSVSHEGGRPRQAVTANPAPRDVAKVAKAVEAAVAAKVKLPPGVFLEYSGTAQGALEA
                     RKELLFNTALAIGGVIALLLLAFGSGRATVLILGATPFALMGGVIAVAVTGGSLSLGS
                     LVGFVTLFGVAARNAILLVARLQQLTDEEGHPWSVQTVLLGTRERLTPIVMTALVTGL
                     GVLPLALSSGQAGREIQGPMAVVILGGLITSTIASLVVLPVLAWRYGRAPMESSGTP"
     gene            complement(3770..>4073)
                     /locus_tag="VHN39_07880"
     CDS             complement(3770..>4073)
                     /locus_tag="VHN39_07880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816296.1"
                     /translation="VSGPQAMRFGSGTVAPATIGEGSGAEGVVIPRAALLRNGGQTFV
                     YLRRDATDFERRAVPAGLSDPDGLFVTAGFKAGEAVVTKGAAQLYAAQSAPAGKAD"
BASE COUNT          659 a         1470 c         1385 g          559 t
ORIGIN      
        1 aagtggcgga cacgatatcc tagatagggc aggcgcatgg ccgatacacg acccccttcg
       61 atttctcgtc gaaccctgat cgcggcggga ctcctggccc tgccagctcg cgccctggcg
      121 gcgcggggcc acgtggtgac gatcctcggg gattcgatca ccgcgggcct gggcctgccg
      181 gccaatttcg ccctgcccgt ccagctgcac ttggccctcg agaaactcgg cgtgcacaac
      241 gtggtgcgcg gcgccggcgt ctccggcgac accagcggcg acggcgcggc ccgcatggac
      301 ttcagcgtcc agccggacac ccaggtcgtg gtggtggcct tgggcggcaa cgacctgctg
      361 caaggggtcg acaccaagac gacgaaggcc aacctcgaca agatcctcac ccgattgaag
      421 gcgcgccata tgggcgtcgt ccttgcgggc ctccacgccc cggacgagat cggcgccggc
      481 tacgcgcggg acttcaacgc ggtgttcccg agcctcgcca aggcccatcg cgtggcgctc
      541 taccccgacc tgctggccgg cgtctcccgt aacggcgccc tcaatcaggg cgacgccatc
      601 caccccaatg cgcaaggcgc ggagatcatc gcgacagggc tcgcgccgct ggtcgccagg
      661 gagctgaaga agcggcccta gggcgtcccg gacgactcca tgggggcgcg gccgtagcgc
      721 caggctagca ccggcagaac caccaggctc gcgatcgtcg aggtgatcag gccgcccagg
      781 atgaccaccg ccatcggccc ctggatttcg cgccccgcct gaccgctgga gagcgccagc
      841 ggcagcacgc ccaggccggt caccagcgcc gtcatcacga tcggcgtcag gcgttcgcgt
      901 gtgcccagca gaacggtctg gaccgaccag ggatggccct cttcgtcggt cagttgctgc
      961 aggcgggcga ccagcaggat ggcgttgcgc gcggccaccc cgaacagggt cacgaagccc
     1021 accagcgagc ccagcgacag gctcccgccc gtcacagcca ccgcgatcac cccgcccatc
     1081 agcgcgaacg gcgtcgcccc gaggatcagc accgtcgcgc gcccgctgcc gaaggccagc
     1141 agcagcagcg cgatcacccc gccgatggcc agcgcggtgt tgaacagaag ctccttgcgg
     1201 gcctccagcg cgccctgagc tgtgccggag tattccagga atacgcccgg cggcagcttc
     1261 accttggccg cgacggccgc ctcgacagcc ttggcgacct tcgcgacgtc gcgcggcgcg
     1321 gggttggcgg tgaccgcctg gcgtggccgg ccgccttcgt ggctcaccga ggtgcgagcc
     1381 tcggtcagat agaccttggc gatcgacctc agcggcacgg cggtccccgt cgccgaccgg
     1441 atcagcaggt cgccgacgtt ctcggggtcg cgcttgagat cgggcggcgt ggtgaccgcg
     1501 atgtcgatcg ttcggttctg ctggaatatc ttggcggcgg tcgccccctg gtaggccgcg
     1561 ccgacggcgg ccagcgcgtc agccggcgcg atgccaaagc gggccagcgc tgcgaagtcg
     1621 agatcgacgc gcaccaccgg cgtctttggc ggagtttgga ccttcacgtc caccgcgccg
     1681 ggcgtggtcg ccatgaccgc ggccacctgg cccgccacgc gatcaagggt gtcgaggtcg
     1741 gcgccgaaaa cgcccaccac caaagccgcg gtttcgccgg acagcgactc cccgatccgg
     1801 tcgcccagga aggtcaggac ctccgtcgtc aggcctggat agctgtcgag gaccttgtga
     1861 atgccctcct gaatctcgtc ctgccgatgg ccagacagcc ctggcttcag ttccacgtgg
     1921 aattcgctgc gctcggtccc gaacgcgtcc tcgccgccct gagaacgccc gagctgctgt
     1981 tcgatatcgg ccacgccatc gatcgccagg atgtccttgc tgatcttcgt cccgtagtcc
     2041 cgcatgaccg ccagcgaggt gccgggtggg cccgccacgc cgagcacgaa gtggctctcg
     2101 cggaagctcg gcagcagttc ggaatcgaac agcatgaacc cggcgacggt gatcaccacg
     2161 gcgatcacgc tggcggcgag cgaccagcgg ggcgccgcga tggcgcggag gagcagccgc
     2221 tcatgtccgt gcttggagtg gcgcaggaag gcgggctcga tcttgagatt ggcgcgctgc
     2281 agcagcagaa gcgccagcgg cggggtgatc accacggcca cggccagcga cgccagggtg
     2341 gcgatgatga aggaggcggc gagcggcgag aagaacgaac cctgcagccc gtgcagcagc
     2401 agcacaggca agagaaccag cgccagcatc agcgtcgcgt agaccaccgg cgcgcgcact
     2461 tcgacggacg ccgccaggat cacgtccctg gcctgcgcgc cggaaggcgc ggtgcgcatg
     2521 cgcttgacga tgttctccgt gccgatcacc gcgtcgtcga ccaccacgcc gagcgccacc
     2581 gccagaccgc ccagcgtcat ggtgttgagc gtcgagccca tccggtcgag cacgatcacc
     2641 gcggtcagca gggcgagcgg gatcgagacg aaagcgatca gcacggtcct gacgtcgcgc
     2701 atgaacgcga acagcacgag cgcgatcagc accgcgccga tggccaggtc gtcgccgatg
     2761 cccttcagcg ccgaggtgat gaagttggct ggccggtgca ggcccgtgtt gatcgtgacc
     2821 ccctgcgcct tcaacgccgg cgccatgtcg gccagggcct tctccaccga gcgggtcgca
     2881 tccagggtat tggcgccgta ctggctggaa atcgagagca gcaccccggg ccgacccatg
     2941 atcagggcgt caccgtcgag ggggccggcc ccatccacca cctcggcgat gtcgccgatc
     3001 cgagccgggg cggcgccgtc taccgtcggc aatggcgccg cggcgacgtc ggcggcggtc
     3061 tgaacctggc cgtgggactc gatcagcacg cgctgctgcg gggtgtcgat gtggccagcg
     3121 ccggacaccc cggtcgaggc attcaccgcg gccagcacgt cagccaggcc cagcccccgc
     3181 gccgccaggg ccgccgggcg cacccgcacc tcgatccgcc gcacctcgcc gccgtaaacc
     3241 gtcgcccgcg ccacgccgtc cgcctgcaga atctgcggac gcaccgtcca gtccaccagg
     3301 tcacgcagct gcatgggcgt cagcttgtcg ctggtgaaac ccaccttcag caggtccatt
     3361 gtggaggagg tgagcggcgt cactcggggc ggggtcaccc cggccggcag cggatcgacc
     3421 tcgttcagcg cctcggacac cacctgccgg tcatggaacg gttccgagcc ctgcgcgaaa
     3481 ttgacggtga tcgtcgacag ccccgcggtc gactgcgagc ggatcgaggc gacgcccgcc
     3541 gagccgttga tcgactgctc caccggacgg gtgaccagtt gttccacctg ctcggccgtc
     3601 aggcccgggg cgtcggtctg cacctccacc tgggccggga cgaaatccgg gaagacgtcc
     3661 agcttggcgc ggcccagcac gatgccgccg tagatcagca acaggatcgc ggcggcgacc
     3721 atcaggcgcg ggcggttcag cgtccatccg acgatcgccg acagcatgct cagtcggcct
     3781 tgccggcagg ggcggactgc gccgcgtaaa gttgcgccgc gcccttggtg accaccgcct
     3841 cgccggcctt gaaacccgcg gtcacgaaca ggccgtcggg atcgctgaga ccggccggaa
     3901 ccgcccgccg ctcgaagtcc gtggcgtcgc ggcgaaggta gacgaaggtc tggccgccgt
     3961 tgcgtagcag cgccgcgcgg gggatcacca cgccctcagc gccggagccc tcaccgatcg
     4021 tcgcgggcgc gacggtcccg gagccgaacc gcatggcctg ggggccgctc acc
//
LOCUS       DATAJL010000410         1776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_45943,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000410 DATAJL010000000
VERSION     DATAJL010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45943"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..398
                     /locus_tag="VHN39_07885"
     CDS             <1..398
                     /locus_tag="VHN39_07885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816297.1"
                     /translation="PTRTLRQAKIAAAVLPVAVMLVPVIVPLAVLAPLTALAAAAGSA
                     ASVSMAAMMNVWWQRPGKRSDFRRRRQSSWLVAMAELLLGVVIAAATGLAAAGLFGWA
                     LIPAVLALAGVLMLRRTDAQIAQALRIAT"
     gene            465..1262
                     /locus_tag="VHN39_07890"
     CDS             465..1262
                     /locus_tag="VHN39_07890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HEX2816298.1"
                     /translation="MSSVLNAALSLRRGDGSRVGADRIALLEALGAAGSIRIAAERTG
                     LSYRGAWDAVQALNNLFETPLVNTQAGGKQGGAAELTAAGRAVITGFHRVEAELAEVI
                     ERLDQGLAGAPADDLGRLFWSLGMQTSARNALRGTVTRITDGAVNAEVSLGVAGGVEI
                     VAIVTRESVAALRLAVGRPAIALIKSSFVVLAKGEGLVTSARNQIRGVVSARVDGAVS
                     SEITLAIAEGKTLTATITRESAEAMALKVGEPLTALIKAPHVILAVE"
     gene            1474..>1776
                     /locus_tag="VHN39_07895"
     CDS             1474..>1776
                     /locus_tag="VHN39_07895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEX2816299.1"
                     /translation="MISSLFGAISNDIAIDLGTANTLIYMKGKGIVLNEPSVVALRNV
                     GGRKVVHAVGIEAKQMLGRTPGHMEAIRPMRDGVIADFEVAEEMIASSILSPPTRTE"
BASE COUNT          271 a          631 c          600 g          274 t
ORIGIN      
        1 cccccacccg caccctgcgc caggccaaga tcgccgcggc ggtcctgccg gtggcggtga
       61 tgctggtccc ggtgatcgtc ccgctggccg tgctcgcgcc cctgaccgcc ctggccgccg
      121 ccgccggcag cgcggcctcc gtcagcatgg cggcgatgat gaacgtctgg tggcagcggc
      181 cgggcaagcg cagcgacttt cgccgccgca ggcagtcgtc ctggctggtg gccatggccg
      241 agctcctgct gggggtggtg atcgccgccg ccaccggcct ggccgccgcc ggcctcttcg
      301 gctgggcgct gatcccggcg gtgctggcgc tggccggcgt cctgatgctg cgccgaaccg
      361 acgcccagat cgcccaggcc ctgcgcatcg ccacctgaac cgtgacaggg gacaaatcgc
      421 tgatagggtc gttgtgcagt ccgaccgcat aacgaggcga cctggtgtct tccgtcctga
      481 atgccgccct atccctgcga cgaggcgacg ggtcccgcgt cggggccgac cgcatcgcgc
      541 tgctcgaagc ccttggcgcg gccggctcga tccgcatcgc ggccgagcgg acggggctga
      601 gctatcgcgg cgcctgggat gccgtgcagg cgttgaacaa cctcttcgaa accccgctgg
      661 tgaacaccca ggcgggcggc aaacagggcg gcgccgccga actgaccgcc gcgggccgcg
      721 cggtgatcac cggcttccat cgggtcgagg ccgagctggc cgaggtgatt gagcgccttg
      781 accagggcct ggctggcgca cccgcggatg acctcggccg tcttttctgg agcctcggca
      841 tgcagaccag cgcgcgaaac gccctccgcg ggacggtgac ccgcatcacc gacggggcgg
      901 tcaacgccga ggtcagcctg ggcgtggccg gcggggtgga gatcgtcgcc atcgtcaccc
      961 gcgagagcgt cgcagccctg cgcctggcgg tgggccgccc ggccatcgcg ctgatcaagt
     1021 cgagcttcgt ggtgcttgcc aaaggcgagg gcctggtcac ctcggcgcgg aaccagatca
     1081 ggggcgtggt gagcgcccgc gtggacggcg ccgtctccag cgagatcacc ctcgccatcg
     1141 ccgagggcaa gacgttgacg gccaccatca cccgcgaaag cgccgaggcc atggcgctca
     1201 aggtgggcga accgctgacc gcgctgatca aggctccgca cgtcatactg gcggtcgagt
     1261 agcgcccccc gatccggcag cgcttgaact tcgcgcgtgg cgcgaatgag cgcagcgctc
     1321 tttatgcctt gaattcgacc agagggcagg gcagggaacg ccaagtctga cggtaattcg
     1381 taacgactcg acgctagatt gagcgtacgc gatgtcgttt cgggtcttcg gcaacgccat
     1441 cccattccag ccccccagtc tccagggcct tccatgatct cttcgctctt cggcgccatc
     1501 tccaacgaca tcgccatcga cctcggcacc gccaacaccc tgatttacat gaagggcaag
     1561 gggatcgtgc tgaacgaacc ctccgttgtg gcgctccgca acgtcggtgg acgcaaggtc
     1621 gtccacgccg tgggcatcga ggccaagcag atgctgggcc gcacccccgg ccacatggaa
     1681 gccatccgcc ccatgcgtga cggggtcatc gccgactttg aagtcgccga ggagatgatc
     1741 gcctcgtcca tcttgtcgcc gccgacccgg accgag
//
LOCUS       DATAJL010000411         3214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57542,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000411 DATAJL010000000
VERSION     DATAJL010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3214
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57542"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..355
                     /locus_tag="VHN39_07900"
     CDS             <1..355
                     /locus_tag="VHN39_07900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX2816300.1"
                     /translation="SSSAPGREGYFTPEAARAWRAKVGSHATAILLDGEGRIGRAYNA
                     RVTPHMFVIDTAGRLAYMGGIDDRPYADPASLKGAKNYVALALADLKAGRPVAQPVSA
                     PYGCSVRYASATGFQ"
     gene            367..1983
                     /gene="pgi"
                     /locus_tag="VHN39_07905"
     CDS             367..1983
                     /gene="pgi"
                     /locus_tag="VHN39_07905"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004347 - glucose-6-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEX2816301.1"
                     /translation="MSGIEAAWTRLDAAAAIARDRRIAGLFDVEPERLARLTLRAAGL
                     ELDLSKQPWSLPDMEACLDLARAGAVEAARGRLFAGETVNASEGRAALHMALRAPKGS
                     DFKAQGEPVSAEVDASRARMAAFADKIRSGALKGATGRPFRTVVHIGIGGSDFGPRLV
                     WEALRPVSPQIGLHFIANVDPAESALALQGLDPAETLVVVVSKTFTTQETMTNAETAK
                     AWLRAALGPAGDAHLVAVSTALDHVAAFGVPADQVFGFRDWVGGRYSVWSSVGLSCVI
                     GLGPEPFEALLAGAAAMDAHFQAAPLDANAPVLLALAHIFNRNGLGRPVRAVVPYAQR
                     LHLLPNFLQQLEMESNGKRMTSAGHPVAHATAAAVFGDAGTNVQHAFFQLMHQGTDVI
                     PADIIAVRQASEGDPAAQTILLANAIAQAEALMVGRTEADVRAELTAKGLPAAEIETL
                     APQRTFPGDRPSAFILMDRLDPARLGALLALYEHKTFVEGVLWGINSFDQWGVELGKS
                     LASRVLGELQGGPAGAHDPSTTALIAKLRR"
     gene            2254..>3214
                     /locus_tag="VHN39_07910"
     CDS             2254..>3214
                     /locus_tag="VHN39_07910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HisS family protein"
                     /protein_id="HEX2816302.1"
                     /translation="MTSDAARPEARSPRGFFDRRARDLTAERKILAAVAEVYERYGFE
                     ALDTGAFEFADALGKFLPDADRPNEGVFALQDDPDSEGGGQWMALRYDLTAPLARFAA
                     QNWETLPKPFRRYAFGPVWRNEKPGPGRYREFVQCDADTVGSARPEADAEIIAMAVAG
                     LEAAGLPVGSAIVKINNRKLLNGLMTAAGVTSEVQKLVVLRAVDKLDRLGPDGVRLLL
                     GEGRKDESGDFTKGAGLTAAAAERVLAFTAAGAGDRAGTLARLADVIGGSEEGDEGLA
                     ELAAIDAALTGVGVAADRAAFDPSVVRGLEYYTGAVFEAELLLQ"
BASE COUNT          457 a         1213 c         1067 g          477 t
ORIGIN      
        1 ctcctcctcg gcgcccggcc gcgagggcta tttcacgccg gaggcggcgc gcgcctggcg
       61 cgccaaggtg ggctcccacg ccaccgccat cctgctcgac ggagagggcc ggatcggacg
      121 cgcctacaac gcccgcgtca ccccgcacat gttcgtcatc gataccgccg gccgcctcgc
      181 ctacatgggc ggcatcgacg accgccccta tgccgatccc gccagcctca agggcgcgaa
      241 gaactacgtt gccctggcgc tggccgacct gaaagccggg cggccggtgg cgcaaccggt
      301 cagcgcgccc tatggctgca gcgtgcgata cgcgtcagcc accggcttcc aatagaggat
      361 cagcgcttgt cagggatcga ggcggcctgg acccgactgg atgcagcggc ggcgatcgcg
      421 cgtgaccgcc gcatcgcggg cctgttcgac gtggagcctg agcgcctggc gcggctgacg
      481 ctcagggccg cgggccttga gctcgatctc tccaaacagc cctggtctct gcccgacatg
      541 gaggcgtgcc tcgacctggc ccgcgccggc gccgtcgagg ccgcgcgcgg acgcctcttc
      601 gccggcgaaa cggtcaacgc ctccgaaggc cgcgccgccc tgcacatggc gctccgcgcg
      661 cccaaaggct ccgacttcaa ggcccagggc gagccggtct ccgccgaggt cgacgccagc
      721 cgcgcgcgca tggcggcctt cgccgacaag atccgctccg gcgcgctgaa gggcgccacc
      781 ggcaggccgt tccgcacggt ggtccacatc ggcatcggcg gatcggactt cgggccgcgt
      841 ctggtctggg aggccctgcg gcccgtcagc ccccagatcg gcctccactt catcgccaac
      901 gtcgacccgg ccgaatcggc gctggcgctg cagggcctcg atcccgccga gaccctggtg
      961 gtggtggtct ccaagacgtt cacgacccag gagaccatga ccaacgccga gaccgcgaag
     1021 gcctggctgc gcgccgcgct gggacccgcg ggcgacgccc atctggtggc cgtctccacc
     1081 gcgctggatc acgtggcggc cttcggggtg ccggccgatc aggtgttcgg cttccgcgac
     1141 tgggtcggcg ggcgctactc cgtctggtcg tccgtggggc tctcctgcgt catcggcctg
     1201 ggacccgagc ccttcgaggc cctgctggcc ggggctgcgg ccatggacgc acatttccaa
     1261 gccgcgccgc tcgacgccaa cgccccggtg cttctggcgc tcgcccacat cttcaaccgc
     1321 aatgggttgg gccgcccggt ccgcgccgtc gtgccctacg cgcaacgcct gcatctgctg
     1381 ccaaacttcc tgcagcagct ggagatggag tcgaacggca agcggatgac atcggctggc
     1441 cacccggtcg cccacgccac cgccgcggcg gtgttcggcg atgccggcac caacgtccag
     1501 cacgccttct tccaactcat gcaccagggg accgacgtga tccccgccga catcatagcc
     1561 gtgcgccagg ccagcgaggg tgaccccgcc gcccagacca tcctgctggc caacgccatc
     1621 gcccaggccg aagccttgat ggtcggccgc acggaggccg acgtgcgcgc cgagctcacc
     1681 gccaagggcc taccggccgc cgagatcgag acgctggccc cgcagcgcac cttccccggc
     1741 gaccgtcctt cggccttcat cctcatggat cgcctggacc ccgcgcgtct cggcgccctc
     1801 ctggccctct acgagcacaa gaccttcgtc gagggtgtgc tctgggggat caacagcttc
     1861 gaccagtggg gcgtggagct gggcaagagc ctggcgagcc gggtgctcgg cgaactccag
     1921 ggcggaccgg ccggcgccca cgatccctcg accacggccc tgatcgccaa gctgcgccgc
     1981 tgactcgctt tgttcacgat ccttcgctat aggcccgtcc ccatgagcgg tttcgcgcat
     2041 caccacggct gccaccacca tccgaccctg gcgggttcgg ttcgggaacg cttgacctaa
     2101 gcgcaccctc tccgagcccc gctttcgcgg acggggctcg atcgatttca gctccgtccg
     2161 tcgcctccct tctccaagga cacgacgatg gacacttctc cttccccaac agcctccttg
     2221 agtgcagacg ccgcagccgg taagcgcgac gccatgacct ccgacgccgc ccgccccgaa
     2281 gcccgttcgc cgcgcggctt tttcgaccgc cgcgcccgcg acctcaccgc cgagcggaag
     2341 atcctggctg ccgtcgccga ggtctacgag cgctacggct ttgaggcgct ggacaccggc
     2401 gctttcgagt tcgccgatgc gcttggcaag ttcctgccgg acgctgaccg tcccaacgag
     2461 ggtgtctttg cgctgcagga cgacccggat tctgaaggcg gggggcagtg gatggcgttg
     2521 cgctacgacc tgaccgcgcc gctcgcccgc ttcgccgccc agaactggga gacgctgccc
     2581 aagcccttcc gccgctatgc cttcggcccg gtgtggcgca acgagaagcc cggccccggc
     2641 cgctaccgcg aattcgtcca gtgcgacgcc gacaccgtgg gctccgcccg tccggaggcc
     2701 gacgccgaga tcatcgccat ggcggtggcg gggctggagg ccgcgggcct gccggtcggt
     2761 tcggccatcg tgaagatcaa caacaggaaa ctgctcaacg gcctgatgac cgccgccggg
     2821 gtgaccagcg aggtccagaa gctcgtcgtg ctgcgcgccg tcgacaagct cgaccgcctg
     2881 ggccccgatg gcgtgcgcct gctgctgggc gagggccgca aggatgagtc cggcgatttc
     2941 accaagggcg cgggcctcac ggccgccgcc gccgagcggg ttctggcctt caccgcggcc
     3001 ggggcgggag atcgcgccgg cacgctggcc agactcgccg acgtgatcgg cggctcggag
     3061 gagggcgacg agggcctggc cgaactggcc gccatcgacg cggcgctcac cggcgtgggc
     3121 gtcgccgctg accgcgcggc cttcgacccc tcggtggtgc gtggactgga atactacacg
     3181 ggcgcggtct tcgaggcgga gctgcttctt caga
//
LOCUS       DATAJL010000412         1534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33262,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000412 DATAJL010000000
VERSION     DATAJL010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33262"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(12..692)
                     /locus_tag="VHN39_07915"
     CDS             complement(12..692)
                     /locus_tag="VHN39_07915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEX2816303.1"
                     /translation="MTQTRPFSTRWGRIALIVLAPLIIAGCGINTIPTKEEAAKAQWA
                     EVQNQYQRRSDLIPNLVNTVKGYAAQEKSTLVEVTEARASATQVKVDASTITNPAQCQ
                     QFAQAQDKLSGVLGRLMMIQERYPDLKSNQNFMALQSQLEGTENRIAIARRDYNQSVQ
                     DFNTTLRTFPQILWAKSMYSSSKPMVLFSAAPQAQSAPTVSFDTTPPPAPAGVAPGSP
                     PPAAPATK"
     gene            813..>1534
                     /locus_tag="VHN39_07920"
     CDS             813..>1534
                     /locus_tag="VHN39_07920"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2816304.1"
                     /translation="MATTRPYYAERGLSAAFYDTVTAADARLQGDLEVYAGLAPAGGA
                     ILELGSGTGRLAFALAERGFSVTGVEIAPAMLAQASAKQADLEPEAARRVAFKRGDMT
                     SLDLRRTFDAVICPYFTLAHVPRGMAWRNTFATAARHLKAGGLAAFHLPLPEIMRLPA
                     PENTDLPVLDQPTPSGGRLRLYVRERTFREDVGRLDQIIEYVELDGRGEVLRSSLERL
                     TYYHTDPDPLAAPEGLTPDRDP"
BASE COUNT          219 a          525 c          529 g          261 t
ORIGIN      
        1 ggccaggttg gtcacttggt ggccggcgcg gcgggcggcg ggctgccggg cgcaacgccg
       61 gcaggcgccg gcggaggcgt tgtgtcaaaa ctcaccgtcg gcgcgctctg ggcctgcggc
      121 gccgccgaga acagcaccat cggcttggag ctcgaataca tcgacttggc ccacaggatc
      181 tgcgggaagg tccgaagcgt cgtgttgaag tcctggaccg actggttgta gtcgcgcctg
      241 gcgatggcga tccggttctc ggtgccctcg agctggctct gcagggccat gaagttctgg
      301 ttggacttca ggtccggata gcgctcctgg atcatcatca gccggccgag cacgcccgac
      361 agcttgtcct gcgcctgggc gaattgctgg cactgggctg ggttggtgat ggtcgaggcg
      421 tcgaccttga cctgggtggc cgaggcgcgg gcttccgtca cctccaccag cgtcgacttc
      481 tcctgggccg catagccctt cacggtgttc acgaggttcg ggatcaggtc gctgcggcgc
      541 tggtactggt tctgcacctc cgcccactgc gccttggcgg cctcttcctt ggtggggatg
      601 gtgttgatgc cgcaaccggc gatgatcagc ggcgcaagca cgatcagggc tatgcgcccc
      661 caacgagtcg agaacgggcg ggtctgggtc acgtggatct ggctccccca tgggctcgtt
      721 gtcgagcctg gtcacagtgt tatttggccc cgccgttgat ccggcgcaac gtcatcgggc
      781 atgacacttc cgtaaccccg cgggaaacga agatggcgac gacccgtccc tattacgccg
      841 aacggggcct cagcgcggcc ttctatgaca cagtgacggc cgccgacgcg cgtctccagg
      901 gcgacttgga ggtctatgcg ggcctggcgc cggccggcgg ggcgatcctg gaactgggct
      961 ccggcaccgg gcggctggcc ttcgcgctgg ctgagcgcgg tttcagcgtc accggcgtcg
     1021 agatcgcgcc ggccatgctg gcccaggcca gcgccaagca ggcggacctg gagccggaag
     1081 cggcgcgccg cgtcgccttc aagcgcggcg acatgacctc cctcgacctc aggcggacct
     1141 tcgatgctgt gatctgcccc tatttcaccc tggcccatgt gccccgcggc atggcctggc
     1201 ggaacacctt cgccaccgcc gcgcggcatc tcaaggccgg gggtctggcc gccttccacc
     1261 tgccgctccc ggagatcatg cgcctgccgg cgccggagaa caccgacctg ccggtgctcg
     1321 accagccgac cccgagcggc gggcgcctga ggctctacgt ccgtgaacgg accttccgcg
     1381 aagacgtggg gcgcctcgac cagatcatcg aatatgtcga gctggacggc cgcggcgagg
     1441 tgctgcgcag ctcgctggag cggctgacct actaccacac cgaccccgac cccctggccg
     1501 cgcccgaggg cctgacgccc gaccgggacc cgat
//
LOCUS       DATAJL010000413         1674 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57557,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000413 DATAJL010000000
VERSION     DATAJL010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1674
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57557"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..1579
                     /locus_tag="VHN39_07925"
     CDS             215..1579
                     /locus_tag="VHN39_07925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012973653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HEX2816305.1"
                     /translation="MNRDVLERLSKDELIALMLAHDAALTAQIAALSKRVGELEANLG
                     RPPKTPDNSSLPPSQGRKTNRAERRAAKRRKGHPGTFRTLADKPDRIVEALAAACPHC
                     SYALGAADQPGFHAYDHVDLPPIRPVVTRVHRHRGACPCCRRTFSAAAPAGLPPGSPF
                     GPGLVALILHLHVTQAIGFERLAQLMDEVFGLTISEGAIANLLARAEAPLTVAAEQIA
                     EAVRHAKVVASDETSARVEGKNWWQWVLLSSTAVYHVIAETRAARVVTGFLQGATPEI
                     WVADRYAGQAGHGKERQICLAHLLRDAQYAIDEGDIGFAPGFKKLLQRACAIGRRREA
                     LKDSTLAQYSAELDRRLTRLLAATPTAIAGRKLARAIRQCRGDLFRFVTRRDVPATNN
                     GCERALRPSVVFRRVTGSFRSLWGPRLYAAAASVIATGRLHRKSALQAIRDALAEVPV
                     FSSA"
BASE COUNT          275 a          588 c          530 g          281 t
ORIGIN      
        1 atcgcgaaat tgctgagcgt gtattcacaa tgactggtat gttgtacgag ccaaaacgag
       61 gagagtattc tgatgcgttg agaaagaaat atagtaactg ctcacccccg tgcaagcgga
      121 tagcgcggct tgtgcaggca gatttggtgg ctcgaggggc tgccgctgca tagatttggt
      181 tgacaggagc aggcgagcgt gattctacga ttcgatgaat cgcgatgtgc tcgagcggct
      241 ttccaaggat gagttgatcg cgctgatgtt ggcgcatgac gcggcgctga cggcacaaat
      301 cgccgctctg tccaagcggg tcggcgagtt ggaggcgaat ctcgggcggc cgccgaagac
      361 gccggacaac tcctcgttgc caccctcgca aggacgcaag accaaccgcg ccgagcggcg
      421 cgcggcgaag cggcgcaagg ggcatcccgg cacgttccgg acgctcgccg acaagccgga
      481 ccggatcgtc gaggcgctgg ccgcggcttg cccgcactgc tcgtatgccc tcggcgcggc
      541 ggatcagcct gggttccacg cctatgacca tgtcgatctg ccgccgatcc ggccggtggt
      601 gacccgcgtg caccggcatc gcggcgcctg tccgtgctgc cgccggacgt tcagcgccgc
      661 ggcgcccgcc gggctgccgc cgggctcgcc cttcgggccc ggcctggtgg ctttgatcct
      721 tcacctgcat gtgacccagg cgatcggctt cgagcggctg gcgcaattga tggacgaggt
      781 gttcggcctc accatcagcg agggcgccat cgccaacctg ctcgcccgtg ccgaagcccc
      841 gctcaccgtc gccgccgagc agatcgccga ggcggtgcgc cacgccaagg tggtcgcctc
      901 ggacgagacc tcggcgcggg tcgaggggaa gaactggtgg cagtgggtgc tgctctcctc
      961 gaccgcggtc taccatgtca tcgccgagac gcgagccgcc agggtggtga ccggcttcct
     1021 ccagggcgcc acccccgaga tctgggtcgc cgaccgctac gccggccagg ccggccatgg
     1081 caaggagcgg cagatctgcc tcgcccatct gctgcgcgat gcgcaatacg ccatcgacga
     1141 gggcgacatc ggttttgcgc ccggcttcaa gaagctcttg cagcgcgcct gcgccatcgg
     1201 ccgccgccgc gaggccctca aggacagcac cctcgcccag tacagcgccg agctcgaccg
     1261 ccgcctcact cgcctcctcg ccgccacccc gacggccatc gccggtcgaa agctcgcccg
     1321 cgccattcgc caatgccgcg gcgatctctt ccgcttcgtc acccgccgcg acgtcccagc
     1381 caccaacaat ggctgcgagc gagccctccg ccccagcgtc gtcttccgca gggtcaccgg
     1441 ctccttcaga tccctctggg gtccgcgcct ctacgccgcc gccgcttccg tcatcgcgac
     1501 cggccgcctc catcgaaaat cagccctcca agcaatccga gacgcactcg ccgaagtccc
     1561 cgtattctcg tcagcgtaac tgctctctct ccgggggtga gcagttacgg cacgggactg
     1621 gtcaagcact tctaaaccaa cgtgtttgtt gcgttagggc gatgacggaa gcta
//
LOCUS       DATAJL010000414         2763 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33297,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000414 DATAJL010000000
VERSION     DATAJL010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2763
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33297"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..632
                     /locus_tag="VHN39_07930"
     CDS             3..632
                     /locus_tag="VHN39_07930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6065 family protein"
                     /protein_id="HEX2816306.1"
                     /translation="MTMANTTGWEILCPFGFTAEWNGGAATSDITIIPDAPVGDPSHF
                     VISHFAYGTLTFHTGYLFRTPPGWALLATGAPNQIKHGIRALDGLVETDWLPFPFTMN
                     WVFSGPGRVRFEKGEPFCFINVVEHSTVERIEPVIRSLDSEPDLKAQYEAWSTSRAEF
                     NQKLTDRDPATLKESWQRFYFKGEPPASGGPAPAQHVNKRRLKTPKPKA"
     gene            complement(640..1416)
                     /locus_tag="VHN39_07935"
     CDS             complement(640..1416)
                     /locus_tag="VHN39_07935"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2816307.1"
                     /translation="MELKTVQTSHVPVRYFEGGSGPALVFLHGAGGVTVEDPFLNALA
                     QKHHVFAPLVPGYGDSEECPEIRDMLDFTLHTWDVVEALGLKDPILVGHSMGGMIAAE
                     MAAIAPNDLTRLALIAPAGLWDDDHPIVDMFATLPFEMPQLLFHDAEAGAAILTAGRN
                     VEDPGFLQAYLVTNARQLGMAGRILFPIPERGLQQRLYRIKARTVIVWGDSDRLIPPV
                     YAHAFKKGIAGAQLVSIPEAGHMVIVEKTAQVVDAISGLG"
     gene            complement(1419..2696)
                     /locus_tag="VHN39_07940"
     CDS             complement(1419..2696)
                     /locus_tag="VHN39_07940"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2816308.1"
                     /translation="MKFTWFNLMPWPYLPDDFREKNRSVWVDIDQKLFDPAKSHEVYN
                     TYMDLLEYADTLGFDGVGVNEHHQNGYGIMPSPNIIAAGLARRTKDAAIVVLGNSIAL
                     YNPPVRVAEEFAMLDCISGGRLVAGFPVGTSMDTNYCYGQIPSLTREKYQEAHDLIIK
                     AWTTREPFAFNGRYNKLRHVNIWPRPIQQPHPPVHIPGGGSVETYDFCIDNTYSYSYL
                     SFSGYLRAQALMSGYWKRVEERGVDKSPYRAGFAQTILVADTDEEAERLYSEHVSYFY
                     NRCLHVYPGFADAPGYRTIKTIQTGALSQYAPPRGGYTQLTWKELTEQGHVIAGSPET
                     VRQRMEDLIKGLNVGNIFCLMHVGNMPADKCMYSTKLFAEKVMPKLRNMFPDWADDKR
                     FWTTPLNKRVTSGSLPKDAPTGAELAKTYGVEA"
BASE COUNT          445 a          904 c          922 g          492 t
ORIGIN      
        1 cgctgaccat ggccaacacc accggctggg agatcctctg ccccttcggc ttcaccgccg
       61 agtggaacgg cggcgcggcc accagcgaca tcaccatcat ccccgacgcg ccggtgggcg
      121 atcccagcca cttcgtcatc tcccacttcg cctacgggac gctgaccttc cacaccggct
      181 atctcttccg cacgccgccc ggctgggcgc tgctggcgac cggggcgccg aaccagatca
      241 agcacggtat ccgcgccctg gacggcctgg tggagaccga ctggctgccc ttccctttca
      301 cgatgaactg ggtgttcagc gggcccggcc gcgtgcggtt cgagaagggc gagcccttct
      361 gcttcatcaa tgtggtggag cactcgacgg tcgagcgcat cgagccggtg atccgctcgc
      421 tcgatagcga gccggacctg aaggcccagt acgaggcctg gtcgacctcg cgcgcggagt
      481 tcaaccagaa gctcaccgac cgcgatccgg cgacgctgaa ggaatcctgg cagcgctttt
      541 acttcaaggg cgagcccccc gcgagcgggg gcccggcccc ggcccagcac gtcaacaaac
      601 gccggctgaa gacgccgaag ccgaaggctt aggccgcgtt cagcccaggc cggagatcgc
      661 gtccaccacc tgggccgtct tctcgacgat gaccatgtgc ccggcctcgg ggatcgagac
      721 cagctgggcg ccggcgatgc ccttcttgaa ggcgtgggcg tagacgggcg ggatcagccg
      781 gtcgctatcg ccccagacga tcactgtcct ggccttgatc cggtagagcc gctgctggag
      841 cccacgttct ggaatcggga aaagtatgcg cccggccatg ccgagctgcc gcgcgttggt
      901 caccagatag gcctgcagga agccagggtc ctcgacattg cggcccgccg tcaggatcgc
      961 ggcgcccgcc tcggcgtcgt ggaacaacag ctgcggcatc tcgaagggca gcgtggcgaa
     1021 catgtcgacg atcggatggt cgtcgtccca caggcccgcc ggcgcgatca gggcgagccg
     1081 cgtcaggtcg ttgggggcga tggccgccat ctcggccgcg atcatgccgc ccatggaatg
     1141 gcccacgagg atcgggtcct tcagccccag cgcctccacc acgtcccagg tgtgaagcgt
     1201 gaaatccagc atgtcgcgga tctctggaca ttcctcgcta tcgccgtagc cggggaccag
     1261 cggcgcgaag acgtggtgct tctgggcgag cgcgttgagg aacgggtcct ccacggtgac
     1321 gcccccagcg ccgtgaagga acaccagcgc cggaccggac ccaccctcga aatagcggac
     1381 cgggacgtgg ctcgtctgga cggtcttgag ctccacggtc acgcctccac gccgtaagtc
     1441 ttggcaagct cggcgccggt gggcgcgtcc ttcggcaggc ttcccgaggt cactcgcttg
     1501 tttaacggcg tagtccagaa gcgtttgtcg tcggcccagt cggggaacat gttcctgagc
     1561 ttcggcatca ccttctcggc gaacagcttg gtggaataca tgcacttgtc ggcgggcatg
     1621 ttccccacgt gcatcaggca gaagatgttg ccgacgttga gacccttgat caggtcctcc
     1681 atccgctgac ggacggtctc gggcgagccg gcgatcacgt ggccctgctc ggtcaattcc
     1741 ttccaggtga gctgcgtata gccgccgcgc ggcggggcgt actggctgag cgcgccggtc
     1801 tggatggtct tgatcgtgcg gtagcccggc gcgtcggcga agccgggata gacgtggagg
     1861 cagcggttgt agaagtagct cacgtgttcg gaatagagcc gctcggcctc ctcgtcggtg
     1921 tcggcgacca ggatcgtttg ggcgaagccc gcgcggtagg ggctcttgtc gacgccgcgc
     1981 tcctcgaccc gcttccagta gccgctcatc agggcctggg cgcgcaggta gccggagaag
     2041 ctgaggtagg agtagctata ggtgttgtcg atgcagaagt cgtaggtctc caccgacccg
     2101 ccgcccggga tatgcaccgg cggatgcggc tgctggatcg gccggggcca gatgttgacg
     2161 tggcgcagct tgttgtagcg gccgttgaag gcgaaaggct cgcgcgtcgt ccaggccttg
     2221 atgatcaggt cgtgcgcttc ctggtacttc tcccgcgtca ggctagggat ctggccgtag
     2281 caatagttgg tgtccatgga ggtcccgacc gggaaccccg ccaccagccg cccgcccgag
     2341 atgcagtcca gcatggcgaa ctcttcagcc accctgaccg gcgggttgta gagggcgatg
     2401 gagttgccca gcaccacgat ggcggcgtcc ttggtccggc gcgccagccc cgcggcgatg
     2461 atgttggggc tgggcatgat gccgtagccg ttctggtggt gctcgttcac cccgacgccg
     2521 tcaaacccga gggtgtcggc gtattccagc aggtccatgt aggtgttgta gacctcgtgg
     2581 ctcttggccg ggtcgaacag cttctggtcg atgtccaccc agaccgaccg gttcttctcc
     2641 cggaagtcgt ccggcagata cggccacggc atcaggttga accaggtgaa cttcatcgcg
     2701 cgcctccgct gggggtctcg ctgccggttt cttatcgccg ttcagtcagg accgacccta
     2761 agg
//
LOCUS       DATAJL010000415         3038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20171,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000415 DATAJL010000000
VERSION     DATAJL010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20171"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            299..943
                     /locus_tag="VHN39_07945"
     CDS             299..943
                     /locus_tag="VHN39_07945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816309.1"
                     /translation="MRRTDWRRLGAVLAVAIAGLPPAQAAAAPKPGPNEATTVSELIV
                     TATKTVSELTVTAKIKCLDPDRPGVRTERPKVVSSYPAKGAVVRPGLLIVRVTFDQPM
                     ACDGLLLRDAPRQNPCPGTPQQFLLSYDRRTVRTVCIVEPGVEYGLTLGTDPDARTFV
                     GLAGLPSLAYRLDFITSTQPAVSTICDALAQDEDTAKQIRARRSLDCGAAPPGG"
     gene            complement(940..1134)
                     /locus_tag="VHN39_07950"
     CDS             complement(940..1134)
                     /locus_tag="VHN39_07950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816310.1"
                     /translation="MDISLTLTLSAGLLALALLAGWRGARPPNPHRGPRMMPWRFIMV
                     TAAACLLPLLVHLASLLGLR"
     gene            1429..>3038
                     /locus_tag="VHN39_07955"
     CDS             1429..>3038
                     /locus_tag="VHN39_07955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Localization factor PodJS"
                     /protein_id="HEX2816311.1"
                     /translation="MPEEVTSEEHFTARPFRAAIEAPKSYMPSSPIIARPDLGRSDDL
                     SRIAVALDRLTDRIEASETRTGLAISGVEHSVRHAMARIETAEREHMAVATRFDAAAE
                     QLAAEQARAAERMRLVEAEMTGPRSAEAMRALEDSVTRVAGEVFEVEARNRATFATLE
                     DRLARSEGEDTATLIDEVVSRLAQRLADAEARTGEALESLRGSLVQLDQRMYASDGSV
                     RGDLDNRLEALADQLTRRVEDARTEIAGRLTATGSGEMEARLGQMAEEMAAVEQRSAR
                     AIETMGREVLTMAETLNRRVQSAEQRSAQAIEQVGGEIARIAGAVENRLGRTDQLHAE
                     ALERLGSEIGKITERLTDRIIQSERRAAQAIDDVGEQVAKVTERIEQRHERAASDLAE
                     RIRQSEERTARLLEGSHARLSAAEPSSASEPEPEPEPVPAHTQILARSEPAPDELPAA
                     PAVFGAELFSRAEPVSQPALDPGNPAFNEEDFAHVDAFAPVDEFAPISETEDDDRFEQ
                     DDRFEQNAPPAREAAPSLSTREVIEQARA"
BASE COUNT          510 a         1078 c         1033 g          417 t
ORIGIN      
        1 ggtgagcgcc accacccaga cgttgtcatc cttggccgcg tcctccaccg ccccgatcac
       61 gccccaggcc agctcctggc tgagcgcatt cttcttctcc ggccggttga gcgtgatggt
      121 gcggacatgc ccgacgtccg acgtcgtgac gagtgccgtc atggcgtgaa tctccccttc
      181 ctcttggccg cgccttgcct cgacggcctg cccttttcag gcagcatagg gcatcggcgg
      241 gctatcggcc tacggcccgc tcgcgctagc ttcggcggcg gcgcaaggga ggcaggccat
      301 gaggcggacg gattggcgga gactgggcgc ggttctcgcg gtcgcgatcg cgggcctgcc
      361 cccggcgcag gcggcagccg cgccgaagcc cggcccgaac gaggccacca cggtttccga
      421 actgatcgtg acggccacca agaccgtctc cgagctcacg gtcacggcca agatcaaatg
      481 cctcgacccg gatcgccccg gcgtacggac ggagcgtccc aaggtggtct ccagctaccc
      541 ggccaagggc gcggtggtcc ggcctgggct cctgatcgtg cgcgtgacct ttgaccagcc
      601 catggcgtgc gacggcctgc tcctgcgcga tgcgccgcgg caaaacccct gtccaggcac
      661 gcctcagcag ttcctgctga gctatgacag gcggaccgtc agaacagtgt gcatcgtgga
      721 gccgggcgtc gagtacggcc tgacgctggg caccgatcca gacgccagga ccttcgtcgg
      781 cctcgcaggc ctgccgtccc ttgcctaccg gctggatttc atcacctcga cacagcccgc
      841 cgtcagcacg atctgcgatg cgttggcgca ggatgaagac accgccaaac agatccgggc
      901 gcgccgcagc ctggactgcg gcgccgcacc gcccgggggc taacggagcc ccagcaggct
      961 cgccaggtgg acgagcaacg gcagcaggca cgccgcggcg gtcaccatga tgaaacgcca
     1021 gggcatcatg cgcggcccgc gatgcgggtt gggcgggcgc gcgccccgcc aaccggcgag
     1081 caatgcgagc gccagcaggc ccgcactgag cgtcagggtg agcgatatgt ccatctgcga
     1141 cgccgtatcg caggcctgct acgcgaacgg aagccgtccg cctgcggagg cctgatctgt
     1201 ccacaggtca gaggcctctc acaccacatc tggtgttagg ctttcgttta cacccctagc
     1261 cacggtgcta gcgtcagcct gtccaggagg ggcgattcga tgacggcggc ggcgccctgg
     1321 agcgtcaaag gtatcgatcc gaaggccaga gaggtcgcaa aggagcttgc ccgccgttcc
     1381 gggatgactc ttggggaatg gcttaaccgg gttatcctag aagatgagat gccggaggag
     1441 gtcacctccg aggagcattt caccgcgcgc ccatttcggg ccgcgatcga ggcgccgaag
     1501 tcgtacatgc cgagttcgcc gatcattgcg agaccagatc ttgggcgttc cgacgacctg
     1561 agccggatcg ccgtggctct ggaccgtctg accgaccgca tcgaggcctc cgaaacacgc
     1621 accggcctgg ccatctccgg cgtcgagcat tcggtgcgcc acgccatggc ccgcatcgaa
     1681 acagccgagc gcgagcatat ggccgtcgcc acccgcttcg acgccgcggc cgaacagctt
     1741 gcggccgagc aggcgcgcgc cgccgaacgc atgcgtctgg tcgaggccga gatgaccggg
     1801 ccgcgttccg ccgaggcgat gcgggcgctc gaggattcgg tcacgcgcgt ggccggcgag
     1861 gtcttcgagg tcgaggcccg caaccgggcg accttcgcca cccttgaaga ccgcctggcc
     1921 cgctcggaag gcgaagacac cgccaccctg atcgatgagg tcgtctcgcg tctggcccaa
     1981 cggctggccg acgccgaggc ccgcaccggc gaggcgctgg agagcctgcg gggctccctc
     2041 gtccaactcg atcaacggat gtacgcctcc gacggcagcg tgcgcggcga cctggacaac
     2101 cggctggagg cgctcgccga tcagctcacc cgccgcgtcg aggacgcgcg tacggagatc
     2161 gccgggcggc tgaccgccac cggctcgggc gagatggaag ccaggcttgg ccagatggcc
     2221 gaggagatgg ccgccgtcga gcagcgctcg gcccgcgcca tcgagaccat gggccgtgag
     2281 gtcctgacca tggccgagac cctgaacaga agggtccaga gcgccgagca gcgcagcgca
     2341 caggccatcg aacaggtagg cggcgagatc gcgcgcatcg ccggcgcggt ggaaaaccgc
     2401 ctgggccgca ccgatcagtt gcacgccgag gcgctggagc gactgggctc ggagatcggc
     2461 aagatcaccg agcggctcac cgatcgcatc atccagtccg aacgtcgggc cgcccaggcg
     2521 atcgacgatg tcggcgagca ggtggccaag gtcaccgagc ggatcgagca gcgccacgag
     2581 cgcgccgcca gcgacttggc cgaacgcatc cgccaaagcg aggaacgcac ggcgcggcta
     2641 ctggagggct cccacgcccg gctgagcgcc gctgagccgt cgagcgcgtc ggagccagag
     2701 cctgagccag agcctgtgcc ggcgcatacc cagatcctcg cgcggtccga gcccgccccg
     2761 gacgaactgc cggccgcgcc ggcggtgttc ggcgccgagc tgttctcccg cgccgagccg
     2821 gtcagccagc cggcgctgga ccccggcaac ccggccttca acgaagaaga cttcgcccac
     2881 gtcgacgcct tcgcgccggt cgatgagttc gcgccgatct ccgagaccga ggacgacgac
     2941 cgcttcgagc aggacgaccg cttcgagcag aatgcgccgc cggcccgcga ggccgccccg
     3001 tcgctctcca ctcgcgaggt cattgagcag gcccgggc
//
LOCUS       DATAJL010000416         9836 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33309,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000416 DATAJL010000000
VERSION     DATAJL010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9836
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33309"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1176
                     /locus_tag="VHN39_07960"
     CDS             <1..1176
                     /locus_tag="VHN39_07960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 15 protein"
                     /protein_id="HEX2816312.1"
                     /translation="VRTLSVPLEWQEAVIRSAITLKLCAHEDTGAIVAALTTSIPEHA
                     VEPGEVARNWDYRYCWLRDAYYVVQALNRLGAADMLENYLVYLRNLVDQVGRSGHVQP
                     VYGVGLEPVLTERVAPDLAGYRGMGPVRVGNQAHEHQQYDVYGQIVLSTVQAFFDERL
                     IRPASVEDFRALESVGDRAFEMHDQPDASLWEFRGREAVHTYSSVMCWAACDRLGNAA
                     KRMGLDARAEHWNGRAAQIRATIEREAWNEELGRYASTFGGDQLDASLLQLVDVRFCA
                     PGDPRMVATMEAVDKGLRRGKFMLRYALPDDFGEPKTAFNFCTFWLIEALHLSGRTEE
                     ARTMFEEMLSRRTKAGLLSEDITFDGKELWGNYPQTYSLVGLINCATLLSRPWSSVR"
     gene            complement(1201..1785)
                     /locus_tag="VHN39_07965"
     CDS             complement(1201..1785)
                     /locus_tag="VHN39_07965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816313.1"
                     /translation="MVFRTAAALALLAVAALGLCACATTVPVQVNPTFTDEVAPTAAR
                     AQVDQNCQVSVIELADGRRSPGILGIVGGRAIKAPEDTTAWLQSILGGLATRGVGVGF
                     DKAAPANAKVVVARVRLQSAWLTETQTNKTANIVLHVHAERGAAAPTERDYRGGLTKI
                     NWNNSDGELQKLVDEAFAEALNEMAFDLRHLCAA"
     gene            complement(1794..2684)
                     /locus_tag="VHN39_07970"
     CDS             complement(1794..2684)
                     /locus_tag="VHN39_07970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816314.1"
                     /translation="MRISAYICGLAAVLFSLSAIPANAADHKNLISDQARALDGGRGL
                     QILVAQEEIKSNINPSNIAVFTGGGLIGALIQVKVDSDRAVKAEAAIQPLRAALTGFD
                     ADVLARDTTAAALAKVAWFKTGAPAFGRDATLPGLSTALDAGPTGQVAFFTYAYDGSP
                     DLSNLRVKVTISIADKALKAGQKPETRLYAKNLIYMTSITSVVNLPNPSKDAASNAAR
                     WSADNGKLARKALAAGFGELGQLIPRALELKEADETVMLAKDKKNTVAGGFNGKVQED
                     GPAGTLLYSGALIHVQTIAE"
     gene            complement(2794..4272)
                     /gene="zwf"
                     /locus_tag="VHN39_07975"
     CDS             complement(2794..4272)
                     /gene="zwf"
                     /locus_tag="VHN39_07975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004345 - glucose-6-phosphate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEX2816315.1"
                     /translation="MAQTPQAETPLADAIVLFGATGDLSRRMLLPSLYFLDADGLLPV
                     GFKILATARAQHSREEFVDQLHKILEARPEGVDDGVWKRFCTRLDYVACDATSAEGVA
                     ALKPQLDGRLRPMFFLAISPSLYGKVCGALAASGLATDQSRIVLEKPIGRDLETSREV
                     NEAVGAVFHEDRIFRIDHYLGKETVQNLIALRFANTLFEPLWNNLTIDHVQITVAETE
                     GVGERWPYYDEYGALRDMLQNHMLQLLCFVAMEPPADMDPRSVRNEKVKVLRSLRRFT
                     RADVQSASVRGQYTKGVVGGKEAAGYETERGKPTGTETFVALRVDIDNWRWAGVPFFM
                     RTGKRLPERRTQIVIQFKPVPHSIFGNAAKDDLVANRLVIDLQPDEDIALTLMNKSPG
                     ISHGGMRLQSMPLSLSLLRTYEGPGARRRIAYERLLLDVMHGDNTLFVRRDEVEEAWR
                     WVDGVADAWAEAGMAPKPYAAGSWGPSGAFALIERSERAWVD"
     gene            4445..5197
                     /gene="otsB"
                     /locus_tag="VHN39_07980"
     CDS             4445..5197
                     /gene="otsB"
                     /locus_tag="VHN39_07980"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004805 - trehalose-phosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HEX2816316.1"
                     /translation="MSIQDITAELLAPRPLRLGETALFLDLDGTLAPIAARPQDVRPD
                     PRRTSLLERLAHQLDGRLAVVSGRTLADVDRILEGCVTTVAAVHGLVRRGPDLAMFET
                     PPHPDLPQAVEAFRAFAARDSGLIVEEKAGLSVALHFRLARGRADAARVCARAIAART
                     GLTLQEGDMVEELRTPGATKGDSVRAFMASRPFAGAQPVFVGDDATDEDGFAAAQTLG
                     GLGICVGAARPTLARFRLAGVEAALAWLEAAL"
     gene            5268..6668
                     /locus_tag="VHN39_07985"
     CDS             5268..6668
                     /locus_tag="VHN39_07985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0005992 - trehalose biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-6-phosphate synthase"
                     /protein_id="HEX2816317.1"
                     /translation="MSRLIVVSNRVSPPNAAGEETVGGLAMALAAALREYSGLWFGWS
                     GKTKKTFDGALDTETVDGVTTAVVDLEEADLDEYYNGYANKTLWPLFHYRTDLAAYDR
                     VYGEGYSRVNRRFAETLAPLIKPDDVIWVHDYHLIPLGRELRMLGIKNRIGFFLHVPW
                     PARQVFTTLPGHKNLVEAMFDYDLVGFQTVEYLQAFEEYALFEAGGSQPAADRLHAFG
                     RTLKVGAFPIGIDAPDFARMLRGATARRMRDLMSAATVFRSLIVGVDRLDYSKGLEER
                     FMGFERYLADNPDMRREVLMLQIAPVSRESVEAYQEIRGRLDALSGRINGEFADIDWA
                     PFRYVNRNYRRDELAGIYRAARVGLVTPLRDGMNLVAKEFVAAQDPADPGVLILSRFA
                     GAAGQMREALLVNPNSPEEIAEALTRALSMDKAERIRRWSALFAGVQREDVTAWRDSF
                     VGALAGAKERRAALAS"
     gene            6681..9404
                     /gene="ligD"
                     /locus_tag="VHN39_07990"
     CDS             6681..9404
                     /gene="ligD"
                     /locus_tag="VHN39_07990"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase D"
                     /protein_id="HEX2816318.1"
                     /translation="MAKADPKTSLARYRSMRDFSKTAEPSGAETVIPSKRYRFVIQKH
                     AATRLHYDFRLELDGTFKSWAVTRGPSMDPADRRLAVEVEDHPLDYGDFEGTIPKGQY
                     GGGTVMLWDRGYWAPEPGTDPHEGLKNGDLKIVMDGERLKGGFVLVRMKRRPKERHDN
                     WLLIKHHDGWAMEGHGDALVEGETTSVASGRTMEEIAAGKGKGPKRFMTGKARAGAKR
                     IWRSKGGEAETAALLRAASPPSLKASATLTAPPKLKPAALPGFVAPQLARSVDRPPPG
                     PGWGHEIKFDGYRLQLRVEGGRATLKTRTGLDWTARFSEIGRDAQSLPDGLIDGEACA
                     LDPHGAPDFAALQAALSDGKTGDLIFFAFDLLFEGGQDLRNLPLRERKERLKTLLAAA
                     ARTAPSKKRRGRIRYVDHFEIAGDAVLQSACRMSLEGIVSKRLDAPYRSGPSETWAKS
                     KCRAGHEVVIGGWTGEAGQLRSLLVGVHKDGRLAYVGRVGTGFGRDKVARVLPRLSKL
                     ESDVNPFSGAGAPRKEAGVHWARPELVAEIEFAGFTGSGMVRQGAFKALREDKPAGEV
                     VAELAEPAPPFAKGKPAFAKGKPALAKGKNGAKAAPVKKPGPPLVMGVTLSHPDKALW
                     PDGGDGQPVTKLDLARYLEAVGPWMMPHLAGRPCSIIRTPDGIGGDQRFFQRHLGKGA
                     SALISEVKVAGDPQPYLQIDRIEALIALAQSGATEFHPWNCQPGQPEVPGRLVFDLDP
                     DEGLDFGRVIEAALEVKARLEALGLTAFCKTTGGKGLHVVTPLKGGKGKVDWPAAKQF
                     AQGLCLAMAADQPDRYVVNMAKAKRVGRIFLDYLRNDRLSTAVAPLSPRARPGAPVSF
                     PLTWRQVKPGLDPKAFTVRTAPGLLKTTKAWADYCDAEQPLAPAIRKLKAG"
     gene            complement(9405..>9836)
                     /locus_tag="VHN39_07995"
     CDS             complement(9405..>9836)
                     /locus_tag="VHN39_07995"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HEX2816319.1"
                     /translation="DWWAPADAKTFEARAKVFGAQYSAYEPLPGAHVNGDLTMGENIA
                     DLGGLTLGLDAYHASLHGKPAPVIDGLTGDQRVFLGWAQAWRGKVRDDAVRRQVVSDP
                     HSPRQYRVNGPVRNIDAWYAAFGVKPGDALYIAPDKRVRIW"
BASE COUNT         1507 a         3294 c         3528 g         1507 t
ORIGIN      
        1 gtgcggacgc tctcggtccc gctggaatgg caggaggcgg tgatccgctc ggcgatcacg
       61 ctgaagctct gcgcccacga ggacaccggc gccatcgtcg ccgcgctcac cacctcgatc
      121 ccggagcatg cggtggagcc cggcgaggtc gcccgcaact gggactaccg gtattgctgg
      181 ctcagggacg cctactatgt ggtccaggcg cttaaccgcc tgggcgcggc ggacatgctg
      241 gagaactacc tggtctatct gcgcaacctg gtggaccagg tggggcggtc cggccacgtg
      301 cagccggtgt atggggtggg cctggagccg gtgctgaccg agcgggtggc gcccgacctt
      361 gcgggctacc ggggcatggg gccggtcagg gtcggcaacc aggcgcacga acaccagcag
      421 tacgacgtct atggccagat cgtgctctcc accgtccagg ctttcttcga cgagcggctg
      481 atccggccgg ccagcgtcga ggacttccgc gccctggagt cggtgggcga tcgggccttc
      541 gaaatgcacg accagccgga cgccagcctc tgggaattcc gcggccgcga agccgtgcac
      601 acctattcct cggtgatgtg ctgggcggcc tgcgaccggc tgggcaacgc cgccaagcgg
      661 atgggcctgg acgcacgcgc cgagcactgg aacggccgcg ccgcccagat ccgggcgacc
      721 atcgagcggg aggcgtggaa cgaggaactc ggccgctacg cctcgacctt cggcggcgac
      781 cagctggacg cgagcctcct acagctggtg gacgtgcgct tctgcgcccc gggcgatcct
      841 cggatggtgg ccaccatgga ggcggtggat aagggcctgc ggcgcggcaa gttcatgctg
      901 cgctatgcgc tccccgacga cttcggcgag ccgaagacgg ccttcaactt ctgcaccttc
      961 tggctgatcg aggcgctgca cctctccggc cgcacggagg aggcgcggac catgttcgag
     1021 gagatgctca gccgacggac caaggccggc ctgctctccg aggacatcac cttcgacggc
     1081 aaggaactgt gggggaacta cccgcagacc tactcgctcg tgggcctgat caactgcgcg
     1141 accctgctgt cccggccgtg gtcgagcgtg cggtgagaca cgcccgttcg gaggccggtc
     1201 tcaggccgcg cagaggtggc gcaggtcgaa ggccatttcg ttcagcgcct cggcgaaggc
     1261 ctcgtccacc agcttctgca gttcgccgtc gctgttgttc cagttgatct tggtcaggcc
     1321 gccgcggtag tcgcgctcgg tcggcgccgc ggcgccccgc tcggcgtgaa catgcaggac
     1381 gatgttggcg gtcttgttgg tctgggtctc ggtgagccag gccgattgca ggcggacgcg
     1441 ggccaccacc actttggcgt tcgccggcgc ggccttgtcg aagccgacgc cgacgccgcg
     1501 cgtcgccagg ccgcccagga tcgactgcag ccacgcggtg gtatcctccg gcgccttgat
     1561 ggcgcggccg ccgacgatgc ccaatatgcc cggcgagcgg cggccgtcgg ccagctcgat
     1621 gacgctgacc tggcagttct ggtcgacctg cgctcgggcc gccgtgggcg cgacctcgtc
     1681 cgtgaaggtc ggattgacct ggaccgggac cgtcgtcgcg caagcgcaaa ggcccagggc
     1741 ggcgacggcc aggagcgcga gggcggcggc ggtgcggaac accatcgcgg cgcctattcc
     1801 gcgatcgtct gaacgtggat cagggcgccg gaatagagca gcgtcccggc cggcccgtct
     1861 tcctggacct tgccgttgaa gccgcccgcc accgtgttct tcttgtcctt ggcgagcatg
     1921 acggtctcgt ccgcctcctt cagctcaagc gcccgcggga tcagctggcc gagctcgcca
     1981 aaacccgcgg ccagggcctt gcgggcgagc ttgccgttgt cggcgctcca ccgcgcggcg
     2041 ttcgacgcgg cgtccttgga ggggttgggc aggttcacca cgctggtgat actggtcatg
     2101 tagatcaggt tcttggcgta cagccgcgtc tccggcttct ggccggcctt cagcgccttg
     2161 tcggcgatgg agatggtcac cttgacccgc aggttcgaga ggtccggcga gccgtcatag
     2221 gcataggtga agaaggcgac ctggccggtg gggccggcgt ccagcgcggt gctgaggccc
     2281 ggcagggtgg cgtcgcggcc gaaggccggc gcgccggtct tgaaccaggc aaccttggcc
     2341 agggcggcgg cggtggtgtc ccgcgccagg acgtcagcgt cgaaaccggt gagcgcggcg
     2401 cgcagcggct ggatcgcggc ctcggccttg acggcccggt cggagtcgac cttgacctgg
     2461 atcagggcgc ctatcaggcc gccgcccgtg aagacggcga tgttcgacgg gttgatgttg
     2521 gacttgatct cctcctgggc caccaggatc tggagcccgc gcccgccatc cagagcgcgc
     2581 gcctgatcgg agatgaggtt cttgtggtcc gccgcattgg cagggatggc ggacaggctg
     2641 aaaagcacgg ccgcaaggcc gcagatgtaa gctgagattc tcacgatttc cccccggaac
     2701 ccgtttcgac agccgcgtca aatcggtcgc acgaacgcta tccggactct cgttacgcgg
     2761 gcaagaggct cgttcgcgcc atttgaggcc tggctagtcc acccaggccc gctcggaccg
     2821 ctcgatgagc gcgaaggcgc ctgagggccc ccacgacccg gcggcgtagg gcttcggcgc
     2881 catgccggct tcggcccagg cgtcggcgac gccgtcgacc cagcgccagg cctcctccac
     2941 ctcgtcgcgg cggacgaaga gggtgttgtc gccgtgcatg acgtcgagca gcagacgctc
     3001 gtaggcgatc cggcggcgcg cgccgggtcc ctcgtaggtg cggagcaggc tgagcgagag
     3061 cggcatggac tgcaggcgca tgccgccgtg gctgatcccc ggcgacttgt tcatcagcgt
     3121 cagcgcgatg tcctcgtccg gctgcaggtc gatgaccaag cggttggcga ccaggtcgtc
     3181 cttggccgcg ttgccgaaga tcgagtgcgg caccggcttg aactggatga cgatctgggt
     3241 gcgccgttcg ggcagacgct tgccggtgcg catgaagaag ggcacgcccg cccagcgcca
     3301 gttgtcgatg tcgacgcgga gcgccacgaa ggtctcggtg ccggtgggct tgccgcgctc
     3361 ggtctcgtag ccggcggctt cctttccgcc caccacgccc ttggtgtact ggccgcggac
     3421 cgaggcgctc tggacatcgg cgcgggtgaa acggcgcaga ctgcgcagaa ccttgacctt
     3481 ctcgttgcgc accgagcgcg ggtccatatc ggccggcggc tccatggcca cgaagcagag
     3541 gagctgcagc atgtggttct gcagcatgtc gcgaagggcg ccgtactcat cgtagtaggg
     3601 ccagcgctcg cccacgccct cggtctcggc cacggtgatc tgcacgtggt cgatggtcag
     3661 gttgttccag agcggctcga agagggtgtt ggcgaaccgc agcgcgatca ggttctgcac
     3721 cgtctccttg cccagatagt ggtcgatgcg gaagatccgg tcctcgtgga agaccgcgcc
     3781 gacggcctcg ttgacctcgc gcgaggtctc cagatcccgg ccgatgggct tttccaggac
     3841 gatgcggctc tggtctgtgg ccagacccga ggcggccagc gccccacaga ccttgccgta
     3901 gaggctgggt gagatggcca ggaagaacat cggccgaagt cggccgtcga gctggggctt
     3961 cagcgccgcc acgccctcgg cgctggtggc gtcgcaggcg acgtagtcca ggcgcgtgca
     4021 gaagcgcttc cagacgccgt cgtcgacccc ctctggccgg gcttcgagga tcttgtggag
     4081 ctgatccacg aactcctcgc ggctgtgctg ggcgcgcgcg gtggcgagga tcttgaagcc
     4141 caccggcagg aggccgtcgg cgtcgaggaa atagagcgac ggcagcagca tgcgccgcga
     4201 caggtcgccg gtcgcgccga acagcacaat ggcgtcggcg agcggcgttt cggcctgtgg
     4261 cgtctgagcc atcgggggct gcctcgaagc gggttgagcg gatccgtcgc atagcgcgga
     4321 ttgcataagg aacgtcaagg ccgcgaaggg tttccctcag cctgaagatc ggcgggcaag
     4381 acgctggggc ggatcgaagg cgccgctgat gcgttgtggt gacgctccgg ggacgcgcca
     4441 cgccatgtcg atccaagaca tcacggctga actgctcgcc cccaggccgc tcaggcttgg
     4501 cgaaacggcg ctgttcctcg acctggacgg caccctggcc ccgatcgccg ccaggccgca
     4561 ggacgtccgt ccggacccac gccgcacgag cctcttggaa cgcctggcgc accagctcga
     4621 cgggcgcctg gcggtggtca gcggccgcac gctggccgac gtcgaccgga tcctggaggg
     4681 ctgtgtcacc accgtggccg ctgtccacgg cctggtccgc cgcgggccgg accttgcgat
     4741 gttcgagacc ccgccgcatc cggacttgcc acaggccgtt gaggcgttcc gcgccttcgc
     4801 agcccgcgat tccggcctga tcgtcgagga gaaggccggc ctctccgtgg cgctgcattt
     4861 ccggctggcc cgcggccggg ccgacgcggc gcgggtctgc gcgcgggcga tcgcggcgcg
     4921 gacgggcctc accctgcagg aaggcgacat ggtcgaggag cttcggacgc ccggcgccac
     4981 caagggcgac agcgtgcggg ccttcatggc cagccgaccg ttcgccggcg ctcagccggt
     5041 gttcgtcggc gacgacgcca ccgacgagga cggcttcgca gcggcccaga ccctgggtgg
     5101 cctcggcatc tgcgtcggcg cggcccggcc cacgctcgcg cggttccggc tggccggcgt
     5161 cgaggcggcg ctggcctggc tggaggccgc gctatgaggg ctccttcgcc aaggcttcgg
     5221 agcccaaggc cccaatccct cgaagctcct gaaaggagcg tagtgggatg agccgcctga
     5281 tcgtcgtctc caaccgggtg agcccgccca acgccgcggg cgaggagacc gtgggaggcc
     5341 tggccatggc tctggccgcg gccttgaggg aatattccgg cctgtggttc ggctggagcg
     5401 gcaagaccaa gaagacgttc gacggcgccc tggacaccga aaccgtggac ggcgtgacga
     5461 ccgctgtcgt cgatctggag gaggccgacc tcgacgaata ttacaacggc tacgccaaca
     5521 agacgctgtg gccgctgttc cattaccgca ccgatctggc ggcctacgac cgggtctatg
     5581 gcgagggcta ctcccgggtg aaccggcggt tcgccgagac cctggcgccg ctgatcaagc
     5641 ccgacgacgt gatctgggtt cacgactacc acctgatccc gctgggccgg gagctcagga
     5701 tgctggggat caagaaccgg atcggcttct tcctgcacgt gccctggccg gcgcggcagg
     5761 tgttcacgac cctgccgggc cacaagaatc tggtggaggc gatgttcgac tacgacctcg
     5821 tcggcttcca gacggtcgaa tatctgcagg cctttgagga atatgccctg ttcgaggctg
     5881 gcgggtcgca gccggcggcc gaccgcctgc acgcctttgg ccgcaccttg aaggtcggcg
     5941 ccttccccat cggcatcgac gcgccggact tcgcccgcat gctgcgcggc gccacggcgc
     6001 gcaggatgcg cgacctgatg agcgccgcca cggtgttccg cagtctgatc gtgggcgtcg
     6061 accggctgga ctattccaaa gggctggaag agcggttcat ggggttcgag cgctacctgg
     6121 ccgacaaccc ggacatgcgc cgcgaggtgc tgatgctgca gatcgcgccg gtgagccgcg
     6181 agagcgtcga ggcctatcag gagatccgcg ggcggctgga cgcgctgtcg ggccggatca
     6241 acggcgagtt cgccgatatc gactgggcgc cgttccgcta tgtgaaccgc aactaccgcc
     6301 gcgacgagct ggccggcatc taccgagccg cccgcgtggg cctggtgacg ccgctgcgcg
     6361 acgggatgaa cctggtcgcc aaggagttcg tggcggcaca agaccccgcg gatcccggcg
     6421 tgctgatcct ctcgcgcttc gccggcgccg cgggccagat gcgcgaggcc ctgctggtca
     6481 atcccaacag ccccgaggag atcgccgagg cgctcacccg cgcgctcagc atggacaagg
     6541 ccgagcggat ccgccgctgg agcgcgcttt tcgccggcgt ccagcgcgag gacgtcaccg
     6601 cctggcgcga ctccttcgtg ggcgcgctgg ccggcgccaa ggagcggcgg gcggcgctgg
     6661 cgagctagag gaccggatcg atggccaagg ccgacccgaa gacgagcctc gcgcgctacc
     6721 gatcgatgcg cgatttctcc aagacggctg agcccagcgg cgcggagacg gtcatcccgt
     6781 ccaagcgata ccgcttcgtg atccagaagc atgcggccac gcgcctgcac tacgattttc
     6841 gcctggagct cgacgggacc ttcaagtcct gggcggtgac caggggccct tccatggacc
     6901 cggctgaccg caggctggcg gtcgaggtgg aggaccatcc gctggactac ggcgacttcg
     6961 aagggacgat ccccaagggc cagtatggcg gcgggacggt gatgctgtgg gaccgcggct
     7021 attgggcgcc ggaaccgggg accgatccgc acgaggggct gaaaaacggc gacctgaaga
     7081 tcgtcatgga cggcgagcgg ctgaagggcg gcttcgtgct ggtgcggatg aagcgccggc
     7141 ccaaggagcg gcacgataac tggctcttga tcaagcacca cgacggctgg gcgatggagg
     7201 gccacggcga cgcgctcgtc gagggcgaga ccacctcggt ggcgtccggc cggacgatgg
     7261 aggagatcgc cgccggcaag ggcaaggggc ccaaacggtt catgaccggc aaggcccgcg
     7321 ccggcgccaa gcggatctgg cgatccaagg gcggtgaggc ggagaccgcg gccctgttgc
     7381 gcgcggcctc gccgcctagt cttaaggcgt cggcgacgct gacggcgccg ccgaagctga
     7441 agcccgccgc tctgccggga ttcgtggcgc cgcagctggc caggtccgtg gaccggccgc
     7501 cgccgggtcc aggctggggc catgagatca agttcgacgg ctatcggctg cagctgcgcg
     7561 tggagggcgg ccgcgcgacc ctgaagaccc gcaccggcct cgactggacg gcccggttca
     7621 gcgagatcgg cagggatgcg cagagcctgc cggacggcct gatcgacggt gaggcctgcg
     7681 cgctcgaccc ccatggcgcg ccggacttcg cggctctgca ggcggcgctg tcggatggca
     7741 aaaccggcga cctgatcttc ttcgccttcg acctgctgtt cgagggcggg caggaccttc
     7801 gaaacctgcc gctgcgcgag cgtaaggaac gcctcaagac cctgctggcc gccgcggcaa
     7861 ggacggcccc atccaaaaaa agaaggggcc gcatccgcta tgtcgaccac ttcgagatcg
     7921 ctggcgacgc ggtgctgcag tcggcctgcc ggatgtcgct ggaggggatc gtttccaagc
     7981 ggctcgacgc gccttaccgc tccgggccca gcgagacgtg ggcgaagtcc aagtgccgcg
     8041 ccggccacga ggtggtgatc ggcggctgga ccggcgaggc ggggcagctc cgctccctgt
     8101 tggtgggcgt gcacaaggac ggcaggctgg cctatgtcgg ccgggtcgga acgggcttcg
     8161 ggcgcgacaa ggtggcccgc gtcctaccca gactttccaa attggaaagt gatgtgaacc
     8221 ccttctcagg cgcgggcgcg ccacgcaagg aagcgggcgt tcattgggcc aggccggagc
     8281 tggtcgccga gatcgaattc gccggtttca ccggctcggg catggtccgt cagggagcct
     8341 tcaaggcgct ccgcgaggac aagcccgcgg gcgaggtcgt ggccgagctt gccgaaccgg
     8401 cgcccccttt tgccaaggga aagcctgctt ttgcaaaggg aaagcccgcc cttgcaaagg
     8461 gaaagaacgg ggccaaggct gcgcccgtga aaaagcccgg ccccccgctc gtcatgggcg
     8521 tgacgctctc ccatccggac aaggcgctct ggcccgacgg cggcgacggc cagccggtca
     8581 ccaaactcga cctcgcgcgc tacctggagg cggtcgggcc gtggatgatg ccgcaccttg
     8641 cgggccgccc ctgctcgatc atccgcacgc cggacgggat cggcggcgac cagcggttct
     8701 ttcagcgcca cctgggcaag ggcgcctcag ccctgatttc cgaggtcaag gtggccggcg
     8761 acccccagcc ctacctgcag atcgaccgca tcgaggcgct gatcgcgctg gcgcaaagcg
     8821 gcgccaccga gttccacccc tggaactgcc agcccggcca gccggaggtc cccggccgcc
     8881 tggtcttcga tctcgaccct gacgagggcc tggacttcgg ccgggtgatc gaggccgccc
     8941 tggaggtgaa ggcgcggctg gaggcgctcg gcctcacggc cttctgcaag accaccggcg
     9001 gcaaggggct gcacgtggtc acgccgctga agggtgggaa gggcaaggtc gattggccgg
     9061 ctgccaagca gtttgcgcaa gggctctgcc tggccatggc cgccgaccag ccggaccgct
     9121 acgtggtcaa catggccaag gccaagcggg tcggccggat cttcctcgac tatctgagga
     9181 acgaccggct ctcgaccgcc gtggccccgc tatcgccccg cgcgcggccc ggcgcgccgg
     9241 tctcgttccc gctgacctgg cgccaggtga agccgggcct cgaccccaag gccttcacgg
     9301 tccgcacggc gccgggcctg ttgaaaacga ccaaggcctg ggccgactac tgcgacgccg
     9361 aacagccgct cgcgccggcg atcaggaagc tgaaagccgg ctgatcacca gatccgcacg
     9421 cgcttgtcgg gcgcgatgta gagggcgtct ccgggcttca ccccaaacgc cgcgtaccag
     9481 gcgtcgatgt tgcggaccgg gccattgacc cggtactggc gcggggagtg cgggtcactg
     9541 accacttggc ggcggacggc gtcgtcgcgc accttgccgc gccaggcctg ggcccagccg
     9601 aggaagacgc gctggtcgcc ggtcaggccg tcgatcaccg gagcaggttt gccgtgcagg
     9661 ctcgcgtgat aggcgtcgag gcccagcgtc aggccgccga ggtcggcgat gttctcgccc
     9721 atggtcaggt cgccgttcac gtgggccccc ggcaggggct cgtaggccga gtactgggcg
     9781 ccgaacacct tggcgcgggc ctcgaaggtc ttggcgtcgg cgggggccca ccagtc
//
LOCUS       DATAJL010000417         2133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106315,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000417 DATAJL010000000
VERSION     DATAJL010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106315"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2032
                     /locus_tag="VHN39_08000"
     CDS             <1..2032
                     /locus_tag="VHN39_08000"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2816320.1"
                     /translation="TRYYVEGDTGEIGPWGTRILVSGNYDHADKWVGAGDEMKEGFDA
                     RIYQPLKGTDFMSLAASYVLEHDYFYDGSSIAQFAQSALGAGKNNLDYNTQWSVPTAR
                     AGVVDTPLATAGPLINAGGAPGFLQGSAGASGLDGNFWALHPNPVVFGTIRGTSKFSL
                     TDKVTFTFDPSFFYTLANGGGVTALSETDPRLKGNKAGAAGVDLNHDGDLLDTVDVYS
                     PNNTNTHRFGLQSSILFDMDEHNHFAIGYTLDYAMHRQTGEFGYINPANGLPGSVFGG
                     NGMIGSTPILTSDGSIMRGRDRHSIAELNQIAVNYIGKFMDDKLHINVGVRDPHFKRD
                     LNQYCYTFNGTSAYCDTIDPALVTAAFNAGVAAKNTNALSTLLFGKTGSISFNAVTQT
                     PNFRAPFSQTFNFTKVLPNAGATYKLTDSQMVYVTYAQGFSAPKTDDLYSSTTAIVQP
                     ETSTSYAAGWRYQTSAITTAVNLFDVDYKNRIVQSFDPTDPTLSIDRNIGDVQIYGLD
                     LEAGAHPFEHMSIYASAEFIKSDVKSNEVVATAGAVALALPTKGKELVLQPDKTFSAD
                     ARYDFGWVDAGLSVKYSGKRWIDDMNTFALPDSTVVNFDARMPISWWGVQNTYLQLNV
                     YNLTNTRQLWRASSVTNATAVVLTPTVTKAAASFFPVYNAPRTLSVTLHAQF"
BASE COUNT          400 a          776 c          615 g          342 t
ORIGIN      
        1 cacccgctac tacgttgagg gtgacaccgg cgagatcggc ccctggggca cgcgcatcct
       61 ggtgtccggc aactacgacc acgctgacaa atgggtcggc gccggtgacg aaatgaagga
      121 aggcttcgac gcgcgcatct atcagccgct gaagggcacg gacttcatga gcctggccgc
      181 cagctatgtg ctggagcatg actatttcta cgacggctcc tcgatcgccc agttcgccca
      241 gtcggcgctc ggcgccggca agaacaacct cgactacaac acccagtggt cggttccgac
      301 cgcccgcgct ggtgtcgtcg acaccccgct ggcgaccgcc ggcccgctga tcaacgcggg
      361 cggggcgccg ggcttcctcc agggcagcgc cggggccagc ggcctcgacg gcaacttctg
      421 ggccctgcac cccaacccgg tggtcttcgg cacgatccgc ggcacctcga agttctcgct
      481 gaccgacaag gtgaccttca ccttcgaccc gtcgttcttc tacaccctcg ccaacggcgg
      541 cggggtcacg gcgctcagcg agaccgaccc gcgcctgaag ggcaacaagg ccggcgcggc
      601 tggggtcgat ctgaaccacg acggcgacct gctcgacacc gtcgacgtct acagccccaa
      661 caacaccaac acccaccgct tcggcctgca gtcgtcgatc ctcttcgaca tggacgagca
      721 caaccacttc gcgatcggct acacgctcga ctacgccatg caccgccaga ccggcgagtt
      781 tggctacatc aatccggcga acggcctgcc cggctcggtc ttcggcggca atggcatgat
      841 cggctcgacc ccgatcttga cgtccgacgg cagcatcatg cgcggccgcg accgtcactc
      901 gatcgccgaa ctgaaccaga tcgccgtgaa ctacatcggc aagttcatgg acgataagct
      961 gcacatcaac gttggcgtcc gcgacccgca cttcaagcgc gacctgaacc agtactgcta
     1021 caccttcaac ggcacgagcg cgtactgcga caccatcgat ccggccctgg tcacggcggc
     1081 cttcaatgct ggcgtcgcgg ccaagaacac caacgccttg tcgaccctgc tgttcggcaa
     1141 gaccggctcg atctcgttca acgcggtgac ccagacgccg aacttccggg cgccgttctc
     1201 gcagaccttc aacttcacca aggtcctgcc gaacgccggc gccacctaca agctcaccga
     1261 cagccagatg gtctacgtga cctacgcgca gggcttctcg gccccgaaga ccgacgacct
     1321 ctactcgtcg accacggcca tcgtgcagcc tgaaacctcc accagctacg cggctggctg
     1381 gcgctatcag acctcggcga tcaccaccgc ggtcaacctc ttcgacgtgg actacaagaa
     1441 ccggatcgtt cagtccttcg acccgaccga cccgacgctc tccatcgacc gcaacatcgg
     1501 cgacgtgcag atctacggcc tggatctgga agcgggcgct cacccgttcg agcacatgtc
     1561 gatctacgcc agcgccgagt tcatcaagag cgacgtgaag agcaacgagg tcgtcgccac
     1621 cgccggcgcc gtcgccctgg ccctgccgac caaaggcaag gaactggtgc tgcagcccga
     1681 caagaccttc tcggccgacg cccgctatga cttcggctgg gtcgatgccg gcctgtcggt
     1741 gaagtacagc ggcaagcgtt ggatcgacga catgaacacc ttcgcgctgc cggattcgac
     1801 ggtcgtcaac ttcgacgccc gtatgccgat cagctggtgg ggcgtgcaga acacctattt
     1861 gcagctcaac gtctacaacc tgaccaacac ccgccagctg tggcgggcgt cctcggtgac
     1921 gaacgcgacg gccgtggtgc tgaccccgac cgtgaccaag gcggcggcgt ccttcttccc
     1981 ggtctacaac gcgccgcgga ccctgtcggt cacgctgcac gcgcagttct aagcccgacg
     2041 ttccgggttc gagatcgggg gcggcctggc gacaggccgc cccttttcta tgggccggcc
     2101 acgctgcgct tgacgacggc gacgccacgg ccc
//
LOCUS       DATAJL010000418         4156 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_81716,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000418 DATAJL010000000
VERSION     DATAJL010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4156
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81716"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..912)
                     /locus_tag="VHN39_08005"
     CDS             complement(4..912)
                     /locus_tag="VHN39_08005"
                     /inference="COORDINATES: protein motif:HMM:NF014477.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEX2816321.1"
                     /translation="MDGLRHEFFAMGSDCVVHLQGCSPSAAEAILRSAEAEVRRIELK
                     YSRYRADSELSRINAVAADGGETFVDPETRGLIDFAQACHRKSDGAFDITSGLLRAGW
                     DFKGASLPTQSALDRLLPRIGMDKVKLTDVGVAFTRAGMELDFGGLGKEYAGDRAAEI
                     CVSLGAQHGFVDLGGDIRVIGPQPDGQPWRIGIRDPRDPALLIAEVRLQSGALATSGD
                     YERFMEVDGRRYCHILDPRTGWPSSGLSSVTVITDSCLVAGSLATSAMVKGADGPAWL
                     QRLGVRHILVDDRGARTGTEPVILRP"
     gene            complement(925..3324)
                     /locus_tag="VHN39_08010"
     CDS             complement(925..3324)
                     /locus_tag="VHN39_08010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2816322.1"
                     /translation="MAVFVCAAPLLLAGPALAADPVFRFDIPRKPLGAALIDLATTAG
                     ASVSTRAARDCAAQGQPLAGRYTLRAALARLLEGTGCSYRLLDEKAVEIVPAARPVPT
                     PTPAAAAGPPQPRSRDLDELIVVATRRATAADRLAYAVSAEDGAAMADLGVKDDADLA
                     STEPAMTVTNLGPGRDKILLRGLSDGPLTGRTQSMVGIYLDDVRLTYNAPDPDLKLVD
                     MAQVEVLRGPQGALYGAGSLGGVLHLATVQPDRRRFEGWVSATLSATEHGDGSGAIEG
                     ALNIPLLDGHGAARIVAYRDDQGGYVNDTALNLRHVNQSSREGARLSADLDVAEAWTV
                     SAGLVGQSINSADTQYDLAGQPAFSRNVALREPHDNDFGEAHLGVQGRLDWADVRWTT
                     ALVSHHLTSRYDATSAPPVPVPTGPAAFDDSDEIRSIVSEATLTSKDGATVQWLSGLF
                     FSHSIQTVDLRLTGLATTNPILAFKEARRDRLDEGAIFGEAIWPLWGSVSLTLGGRLF
                     TSTSHVSSVIQAPLSGTQSSFTGGVSHSGFAPKIVLSYARSPNLLMYLQASEGYRSGG
                     VNTTGVPGQVFDPAGGAEPNRYYSGDELWNLEAGVRASALDGRLVVRAAAFEAIWQNI
                     QSDELLPSGLPFTANIGDGRNTGVEFEGRYSDGPLTLRAEFLINAPELDHANPEFPAR
                     AELGLAGVPDASGGVSAHYAWPLSAGRTFELDGRYAYIGRSHLTFDEAISPRMGGYAT
                     GRLAASLDISRWRLTLALDNPSDERGNTFAYGNPFTVRATQQVTPQRPRTVSVSLRTS
                     F"
     gene            complement(3381..>4156)
                     /locus_tag="VHN39_08015"
     CDS             complement(3381..>4156)
                     /locus_tag="VHN39_08015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEX2816323.1"
                     /translation="PRPIAAVLPFKSRIRRTPAWAPLAGLAAAAAVIAFVATPGLERA
                     YEGAPTTYRTTVGETREVALGDGSHVRLDGASTMTVRMGWRSRRIDLAQAQATFDVAK
                     DPRRPFLVNVGDQQVRVVGTEFNILHDDQQVVVSVRRGVVEVRQPGLGSDPIVRLVKG
                     DELRHAEGTQVSQQQRVDPNKAFAWASGRLVCDDEPLSQIVAELNRRYALPIRVSKTA
                     GAKRFSGVLELGDQATLLRRLADYLSISVRRTDREITLS"
BASE COUNT          721 a         1374 c         1383 g          678 t
ORIGIN      
        1 atatcaaggc ctgaggataa cgggctcggt tcctgtgcgc gcgccgcgat cgtcgaccag
       61 aatgtggcgc acgcccagtc tctgaagcca ggccggaccg tcggcgccct tgaccatcgc
      121 ggaggtcgca aggcttccgg ccaccaggca gctgtcggtg atcacggtga ccgaggacag
      181 ccctgagctg ggccaccccg tccgcgggtc gaggatgtgg caataccgtc ggccatcgac
      241 ttccatgaag cgctcatagt ctccgctggt cgcgagcgcg ccactctgaa gtcggacttc
      301 ggcgatcagc agcgccggat cgcgcggatc gcggatgccg atgcgccaag gctgcccgtc
      361 cggctgcggc ccgatcacac ggatgtcacc gccgagatcg acgaagccat gttgggctcc
      421 gagactcacg caaatctcgg cggcgcggtc gccagcgtat tcctttccca ggccgccgaa
      481 gtccaactcc attccggcgc gcgtgaaagc tacgcccacg tcagtcagct tcactttgtc
      541 catgccgatg cgcggaagca gcctgtcgag cgcggactgg gtgggcaagg atgcgccttt
      601 gaaatcccaa cccgctcgca acagtcccga ggtgatgtcg aacgcgccgt cactcttgcg
      661 gtggcaggcc tgggcgaagt cgatcagccc cctggtctca ggatctacaa acgtttcacc
      721 cccgtccgcg gccacggcgt tgatccgtga gagctcgctg tcggcccggt agcgcgagta
      781 tttcaactcg atccggcgga cctcggcctc cgcgctgcgc aagatcgcct cggcggctga
      841 cggggagcaa ccctgcaggt ggaccacgca gtccgagccc atagcgaaga actcatgccg
      901 caggccgtcc atcccgcgcc cttctcagaa gctcgtgcga aggctgaccg acacggttcg
      961 cggtcgttgc ggggtgacct gctgcgtcgc gcgcactgtg aagggattgc cgtaggcgaa
     1021 cgtattgccg cgttcgtcag agggattgtc gagcgccaag gtaagccgcc aacgggagat
     1081 gtcgaggctc gctgccagcc gtcccgtcgc gtagccgccc atccgtggcg aaatcgcttc
     1141 atcgaaggtc aggtgcgaac gcccgatgta ggcgtagcgc ccgtcgagtt cgaaggttcg
     1201 gcccgccgac aacggccaag cgtaatgcgc tgacacgccg cctgaggcgt ctggcacacc
     1261 ggccagtccg agctcggcgc gggccggaaa ctcagggttc gcatggtcca gttcaggggc
     1321 gttgatcaga aattcagccc gcagggtcag ggggccgtcg ctatagcgtc cttcgaattc
     1381 cactcccgtg ttgcgtccat cgccgatgtt ggcggtgaac ggcagccccg atggaagaag
     1441 ttcgtcactc tggatgttct gccagatcgc ctcgaaggcc gcggcgcgaa ccaccagtcg
     1501 cccatccagc gcactggctc gaaccccggc ctccagattc cagagctcgt cgccggaata
     1561 gtatcgattg ggctccgcgc cgcctgcggg gtcgaagacc tgccccggga cgcccgtcgt
     1621 gttcacgccg cctgaacggt agccctcgga cgcctgcagg tacatcagca ggttgggtga
     1681 gcgggcatag gacagcacga tcttcggagc gaagcccgaa tgcgagacgc ccccagtgaa
     1741 cgaggattgc gttccgctca acggcgcttg gatcacgctg ctcacatgtg aggtcgacgt
     1801 gaacaggcgc ccgccaagcg tcagactgac ggagccccat agcggccaga tcgcctcacc
     1861 aaagatggcg ccctcgtcaa ggcggtcgcg ccgcgcttcc ttgaaggcca ggatgggatt
     1921 ggtcgtcgcc agaccggtca gtcgcagatc cacggtctgg atgctgtggc tgaagaaaag
     1981 gccgctcagc cactgcaccg tcgcgccgtc cttcgacgtg agcgtggcct ccgaaacaat
     2041 gcttcgaatc tcgtcgctgt cgtcgaaggc ggcaggtccg gttgggaccg gaaccggcgg
     2101 agccgaggtg gcgtcgtatc ggctggtgag gtgatgactg acgagtgccg tcgtccatct
     2161 cacgtcggcc caatcgaggc gcccctgtac gcccaggtgc gcctcgccga agtcgttgtc
     2221 gtgcggttcc cgcaaggcga cattgcggga gaaagccggc tgacccgcga ggtcgtactg
     2281 ggtgtcggcg gagttgatcg actgacccac gagaccggcc gacaccgtcc aggcctcggc
     2341 cacgtcgagg tccgctgaca ggcgtgcgcc ttcccggctc gattgattga catgtctgag
     2401 gttcagcgcc gtgtcgttga cgtaaccgcc ctggtcgtcg cgataggcca cgatccgggc
     2461 agcgccatgg ccgtccaaca gcggaatatt cagcgcaccc tcaatggcgc cggaaccgtc
     2521 accgtgttcg gtggcgctaa gggtcgcgga aacccagcct tcgaagcgcc gccgatcagg
     2581 ctggacggtc gccaggtgca acacgccgcc caatgagccg gcgccgtaga gcgcgccttg
     2641 aggcccccgc aagacctcga cctgagccat gtccactagc ttcaggtcgg gatccggcgc
     2701 gttgtaggtc aggcggacat cgtccaggta gatgccgacc atcgactggg tgcggccggt
     2761 cagcggtccg tcagaaaggc cgcgcagcag gattttgtcg cgacctggtc ccaggttggt
     2821 gaccgtcatg gcgggttcgg tcgaggctag gtcggcgtca tccttgacgc ccaggtcggc
     2881 cattgccgcg ccatcctcag cgcttaccgc ataggccaga cgatcggcgg cggtcgcgcg
     2941 gcgagtggcg accacgatca actcgtcgag gtctctgctg cgcggctggg gcggtccggc
     3001 cgccgccgct ggtgttggcg tcgggaccgg tcgggcggcg ggcacgatct caaccgcctt
     3061 ttcatcgagc agccggtagc tgcatccggt gccttcgagc agacgggcca gcgccgcgcg
     3121 cagcgtgtag cggcccgcca gcggctgtcc ctgcgccgcg cagtcccggg cggcccgcgt
     3181 gctgaccgaa gctccggccg tggtggccag gtcgatcagg gccgcgccaa gcggcttgcg
     3241 cggaatgtcg aagcggaaga ccggatcagc cgccaaggcg gggccggcca gaagaagagg
     3301 cgccgcgcag acgaagaccg ccaaacctcg gcgcacggta tggcgaagca agagcgcaag
     3361 tccccttggc ctgatcggta tcagctcagc gtgatctcgc ggtccgtacg ccgcacggag
     3421 atcgaaagat agtccgcaag cctgcgcaac aaggttgcct gatcccccag ctcaaggacc
     3481 ccggaaaacc gcttggcgcc agcggtcttc gaaacccgga tcggcagggc gtagcggcga
     3541 ttgagctccg ccacgatctg gctgagcggt tcgtcgtcgc acaccagcct tccggaggcc
     3601 caagcgaagg ccttgttcgg atcgacgcgc tgctgctgcg aaacctgggt tccttcggca
     3661 tggcgaagct cgtcgccctt caccaggcgc acgatgggat ccgatccgag acctggctgg
     3721 cgcacctcca cgacaccacg gcgaacgctg accaccacct gctggtcgtc gtggagaata
     3781 ttgaactcgg tgccgacaac acggacctgc tgatcgccga cgttgaccag gaatggccgc
     3841 cttggatcct tggcgacgtc gaaagtcgcc tgggcctggg ccagatcgat gcggcggcta
     3901 cgccaaccca tccgtaccgt catcgtcgag gcgccgtcga ggcggacgtg cgagccgtcg
     3961 ccaagagcga cctcccgggt ttcgccgact gtagtccgat aggtcgtggg cgcgccttcg
     4021 taggcgcgtt ccagtccggg cgtagccacg aatgcgataa ccgccgcggc cgcagccagg
     4081 ccggccaagg gcgcccaggc cggggtgcgt cggatccggg acttgaacgg cagaacggct
     4141 gcaatcggac gcggga
//
LOCUS       DATAJL010000419         2586 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33373,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000419 DATAJL010000000
VERSION     DATAJL010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2586
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33373"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1169
                     /locus_tag="VHN39_08020"
     CDS             <1..1169
                     /locus_tag="VHN39_08020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816324.1"
                     /translation="LVAGTGLYVTASAALLFLSLMSLTRLRPRSTWLAVGLGVLVLLT
                     PQILIYQGIVWRDVLFANLTIAGFVMLAHAAERWRARPPVLPLLGALVCLALAALARQ
                     NGVVLVIAAAGVLAWTARAGGWRQSLAWGLGALMATSLLALGINRIATPAETQAKLRL
                     NSASLILEHYDIVGAKAHHMSLRFKEIAKVDPAAAALLEAKSQQMYSASRVDTLDLDD
                     AFRKTLWHVPDQAMNAQWRRIIVHYPAAYLLQRADVFRWVFLTPKLDQCLPVTVGVSG
                     PDAMVRDLNVQAGIDPQDQGLANYARRFYGTPVFSHLTWAVVAAGVIVLLLRRRAPAD
                     WVFVALLGGTLVFVATFAVISVACDYRYLYLLDLAAMVGVLYTALDPPRWRRAA"
     gene            complement(1166..2284)
                     /locus_tag="VHN39_08025"
     CDS             complement(1166..2284)
                     /locus_tag="VHN39_08025"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2816325.1"
                     /translation="MTGEITIVGYPFQPTGMAEHARSTFRAFQAAGVTPRLLDVADAN
                     RSFDPDLERDFGPHLVTTLGEGVNLFGVNGDEAARVIDKVGAAAFARGYNIAYPAWEL
                     ARYPEIWAKVLDRFDEIWAPSSFVQTALQDAVSRPVHCMPLPVELKLSSFLGRRHFGI
                     PEEAFVVVFFFDFASFADRKNPGAVLEAFELLAARRPDADIHCVIKSRGGHDMDEAQA
                     ALEARLAVLGPRAQALYGDLSDNEIKNLVRVADVFVSLHRSEGFGRGMAEAMAMGRPA
                     IATGYSGNLDFMPPGTGLLVDYELVPVAPGAYPHGDGQVWAEASPEHASRLIEQLLDD
                     PAEARAMGARARAFMAENYSLKVMGRRCLGRLNAIGRA"
     gene            complement(2281..>2586)
                     /locus_tag="VHN39_08030"
     CDS             complement(2281..>2586)
                     /locus_tag="VHN39_08030"
                     /inference="COORDINATES: protein motif:HMM:NF025665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 99-like
                     domain-containing protein"
                     /protein_id="HEX2816326.1"
                     /translation="VAERLNESSEPGLIPLVVAAHDTTPGSQDAPVVWQGASPGALQA
                     WLEAASDSVRDLAAERRMVFVHAWNDWETGAALAPDLRFGHGWLEAIANAADADLLA"
BASE COUNT          367 a          875 c          934 g          410 t
ORIGIN      
        1 gactggtggc cgggacgggg ctctatgtga ccgcctcggc ggcgctcctg ttcctcagcc
       61 tgatgtcgtt gaccaggctt cggccgcggt cgacctggct ggcggtgggc ctgggtgtcc
      121 tggtgctgct gacgccgcag atcctgattt accaggggat cgtctggcgc gatgtcctgt
      181 tcgccaacct gaccatcgcg ggcttcgtga tgctggctca tgcggccgag cggtggcgtg
      241 cgaggccgcc ggtcctgccc ctcctgggcg ccctggtctg cctcgccctg gccgccctgg
      301 cgcggcagaa cggcgtcgtg ctggtgatcg ccgccgcggg agttctggcc tggaccgcgc
      361 gggccggcgg ctggcgccaa agcctggcct ggggtctggg cgccctgatg gccacgagcc
      421 tgctggcgct ggggatcaac cggatcgcga cgcccgccga gacccaggcg aaactgcggc
      481 tcaactccgc ttcgctgatc ctcgagcact acgacatcgt cggcgccaag gcccaccaca
      541 tgagcctgag gttcaaggag atcgccaagg tcgatccggc cgccgccgcc ctgctggagg
      601 ccaagtccca gcagatgtat tcggcgtctc gcgtcgatac gctggatctc gacgacgcct
      661 tccgcaagac gctctggcac gtgccggacc aggccatgaa cgcccaatgg cggcggatca
      721 tcgtccacta tcccgccgcc tatctgctgc agcgggccga cgtcttccgc tgggtcttcc
      781 tgacgccgaa gctggaccag tgcctgccgg tgacggtggg agtcagcggg cccgacgcca
      841 tggtgcggga cctcaacgtt caggccggga tcgatccgca ggaccagggc ctggccaact
      901 acgccagacg gttctacggc acgccggtct tctcgcacct gacctgggcg gtggtggcgg
      961 ccggtgtgat cgtgctgctg ctcagacggc gggctcccgc ggactgggtg ttcgtggcgc
     1021 tgctcggcgg gacgctggtc ttcgtcgcga cctttgcggt gatctcggtg gcctgcgact
     1081 atcgctatct ctacctgctc gatctcgccg ccatggtggg ggtgctctac acggcgctcg
     1141 acccgccgcg ctggcgcagg gccgcctagg cccggccgat cgcgttcaac cggccgaggc
     1201 agcggcggcc catcaccttg agggaatagt tctcggccat gaaggctctg gcccgggcgc
     1261 ccatggcgcg ggcctcggcg gggtcgtcca gaagttgttc gatcaggcgc gaggcatgct
     1321 cgggcgaggc ctcggcccag acctggccgt ccccgtgcgg ataggcgccg ggcgctaccg
     1381 gcaccagttc gtaatcgacc aggaggccag tccccggcgg catgaagtcc aggttgccgg
     1441 aatagccggt ggcgatggcc gggcgaccca tggccatggc ctcggccatg ccgcgcccga
     1501 agccctccga gcggtgcagc gagacgaaga cgtcggcgac ccgcaccagg ttcttgatct
     1561 cgttgtcgga gaggtcgccg taaagcgcct gggcgcgggg tccgaggacg gccagacggg
     1621 cctcaagcgc ggcttgcgct tcgtccatgt catgaccgcc gcgggacttg atcacgcagt
     1681 ggatgtcggc gtcgggacgg cgcgcggcca gcagttcgaa ggcctccagc accgcgcccg
     1741 ggttcttgcg gtcggcgaag gaggcgaagt cgaagaagaa caccaccacg aaggcctctt
     1801 cggggatgcc gaaatggcgt cggccgagga acgacgagag cttcagctcc accggcagag
     1861 gcatgcagtg gacgggccgg gagaccgcgt cctgcagggc cgtctgtacg aagctcgacg
     1921 gcgcccagat ctcgtcgaag cggtccagga ccttggccca gatctcggga tagcgggcga
     1981 gctcccaggc cgggtaggcg atattgtagc cgcgcgcgaa ggccgcggcg ccgaccttgt
     2041 cgatcacgcg ggcggcctcg tcgccgttga cgccgaagag gttcacgcct tcgcccagcg
     2101 tggtgaccag atgggggccg aaatcgcgct ccaggtccgg atcgaagctg cggttggcgt
     2161 cggcgacgtc cagcaggcgc ggcgtcacgc cggccgcctg gaaggcgcga aaggtcgagc
     2221 gcgcatgctc ggccatgccg gtgggctgga agggatagcc gacgatggtg atctcaccgg
     2281 tcatgccaag aggtccgcgt cggcggcgtt ggcgatcgcc tccagccagc cgtggccgaa
     2341 gcgcaggtcg ggcgccagcg ccgcgccggt ctcccagtcg ttccaggcgt ggacgaagac
     2401 catgcgccgt tcggcggcga ggtcccgcac gctgtcgctt gcagcctcca gccaggcctg
     2461 cagggcgccg gggctcgcgc cctgccagac caccggcgcg tcctgcgagc cgggcgtggt
     2521 gtcgtgggcg gccaccacca gtgggatcag gccgggctcg gacgactcgt tcagccgctc
     2581 cgccac
//
LOCUS       DATAJL010000420         4442 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20283,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000420 DATAJL010000000
VERSION     DATAJL010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4442)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4442)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4442
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20283"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..304
                     /locus_tag="VHN39_08035"
     CDS             <1..304
                     /locus_tag="VHN39_08035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEX2816327.1"
                     /translation="RGFGPATMATLEQDARRAGVSAPFLEATGERARDLWRQAFDLLM
                     QLEALERAVEAAARDLDRDHDSSTLISLKTERDLLRKLITSDWSHPEEAATPVLPH"
     gene            complement(311..2488)
                     /locus_tag="VHN39_08040"
     CDS             complement(311..2488)
                     /locus_tag="VHN39_08040"
                     /inference="COORDINATES: protein motif:HMM:NF014758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX2816328.1"
                     /translation="MNDIALTRRALVFSGLSATGALVIGVPAVASAALQPPVMADGTN
                     PAKEMTAFVIIEPDNTVTIRVPHQEMGQGTTTALAMLVAEELECDWTKVKVEYASANR
                     NSRAGGNLYGRMQTVGSSGLRTSVTMMQQAGASARERLKLAAADRWKIDPADCTVSSG
                     KCLHMASNRSLDYGALAATAAAVQLPAEPAIKTPDKYQLVGKWTPRLDTATKLDGSAK
                     FGLDAQVPGMVYAAVWSSPVYGGSLKAVDEAGLKDIRGIVGVVKLPDAVVVVADRYWR
                     AKKGLDALKIEWGDGGYGGVDSAQLDAGLLSALDRPMSTAEKKGDAAAALAAPGARLI
                     EATYQAPFLSHSPMEPMNCTVALGPDRVDVWISTQAPMAVLQLAAKEAGFKPEQVYCH
                     NAFVGGGFGRRGGGHDELVQAIAVAKQVGKPVKLIWSREQDIRRDRYRPQAAVRFKTA
                     LGADGKPQALQARIAVPSLIRGGNGPQEWQASEPMATECIQNSFYAFPARDIGVVLKN
                     SHVPVSFWRGVGSSQNGFFVESFMDELAHAAGQDPYQYRRALLTDRPDALGVIDAMAK
                     HSDWGQPLPKGRGRGLAIIEAYGSVSGQVVEVTVSQDGKLKVDRVTCVLDPYHVANPN
                     TVEQQMEGAVVMGLTAALWGEITIKDGAPVESNFHNYRMARMVETPARIDVHLVPSGG
                     PRWGGVGEPGLGPFAPALANAVFAATGVRVRRLPLKHADLRWT"
     gene            complement(2485..2964)
                     /locus_tag="VHN39_08045"
     CDS             complement(2485..2964)
                     /locus_tag="VHN39_08045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX2816329.1"
                     /translation="MITLTVNGKRHDLDVEPDAPLLWVIRDELGLTGTKFGCGIAQCG
                     ACTVQVDGKPVRSCVTPAGSVKGQITTIEGLSTGLKHPVQQAWLAEDVPQCGYCQSGQ
                     IMAAAALLKDTPNPTDADIDAKLTNICRCGTYPRIRKAVHRAAATLAQGARTKGART"
     gene            3590..>4442
                     /locus_tag="VHN39_08050"
     CDS             3590..>4442
                     /locus_tag="VHN39_08050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518515.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor region1.1
                     domain-containing protein"
                     /protein_id="HEX2816330.1"
                     /translation="MSTTTAEAETPETTGGDGPLLDLTDAAVKKFIKQAKARGYVTMD
                     ELNKVLPSEEVTSEAIEDTLAMLSEMGVNVVEAEEDAEGGGEVAVREESAVVETAKEA
                     AYDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRDTMIRGLCESALTFEAIMVW
                     REELGSGRILLREVIDLEQTYGGVNAAAAEELAANAPPPAEVEEAEPELNADGEAIPK
                     SDDDDDFDDGAGPTISAMEGELREGVMLTLDAIAAEFESFRLLQEKLVGQRLKGQDLS
                     DKDRAAYV"
BASE COUNT          715 a         1510 c         1525 g          692 t
ORIGIN      
        1 ccgcggcttt ggtcccgcga cgatggcgac cctggaacag gacgcccgcc gcgccggggt
       61 cagcgcgccc ttcctggaag ccaccggcga acgggcccgc gacctctggc gccaggcctt
      121 cgacctcctg atgcagttgg aggccctgga gcgcgccgtg gaagccgccg cccgcgacct
      181 cgaccgcgac cacgatagct cgaccctgat cagcctgaag accgagcgcg acctgctgcg
      241 caagctgatc accagcgact ggtctcaccc cgaagaggca gcgacgccgg tcctgccgca
      301 ctgagcccgg tcaggtccag cgcaggtccg cgtgcttcag cggcagccgc cgcacccgca
      361 cgccggtcgc ggcgaacacc gcattggcga gcgccggcgc gaaggggccg agcccgggct
      421 cacccacgcc gccccatctc gggccgccgc tcggaaccag gtgaacgtcg atgcgcgcgg
      481 gcgtctcgac catcctggcc atccggtagt tgtggaagtt gctctccacc ggcgcgccgt
      541 ccttgatggt gatttcaccc caaagcgccg cggtgaggcc catgaccacc gcgccttcca
      601 tctgctgctc gaccgtgttg gggttggcca catggtaggg gtcgaggacg caggtgacgc
      661 ggtcgacctt cagcttgcca tcctgcgaga ccgtcacctc gaccacctgg ccggagacgc
      721 tgccgtaggc ctcgatgatg gccaggcccc gcccgcgccc cttgggcagg ggctggcccc
      781 agtcggagtg cttggccatg gcgtcgatga cgcccagcgc gtcgggccgg tctgtgagca
      841 gggcgcggcg gtactggtag gggtcctggc cggccgcgtg ggcgagctca tccatgaagc
      901 tctcgacgaa gaagccgttc tgggaagagc cgacgccgcg ccagaaggag accggcacgt
      961 ggctgttctt caggacgacg ccaatgtccc gcgcgggaaa ggcgtaaaag ctgttctgga
     1021 tgcattcggt ggccatcggc tcgctggcct gccactcctg cgggccattg ccgccgcgga
     1081 tcagcgaggg cacggcgatg cgcgcctgca aggcctgcgg cttgccgtcg gcgcccagcg
     1141 cggtcttaaa gcgcacggcg gcctgcgggc ggtatcggtc gcggcggatg tcctgctcgc
     1201 gcgaccagat cagcttgacc ggcttgccca cctgcttggc gaccgcgatg gcctggacga
     1261 gctcgtcatg cccgccgccg cgccggccga agccgccgcc gacgaaggcg ttgtggcaat
     1321 agacctgctc gggcttgaag cccgcttcct tggccgccag ctgcagcacc gccatgggcg
     1381 cctgggtgga gatccagacg tcaacgcggt cggggccaag cgccaccgtg cagttcatcg
     1441 gctccatcgg cgagtgcgac aggaagggcg cctgataggt cgcctcaatc agcctggcgc
     1501 cgggggccgc cagcgcggcg gccgcgtcgc ccttcttctc ggctgtcgac atcggtcggt
     1561 ccagcgcgct cagcagacct gcgtccagct gggcgctgtc gacgccgcca taaccgccgt
     1621 cgccccactc gatcttcagc gcgtcgaggc ccttcttggc gcgccagtag cgatcggcga
     1681 cgaccacgac cgcgtccggc agcttcacga cgccgacgat gccgcggatg tccttcaggc
     1741 ccgcctcgtc caccgccttc agcgatccgc catagaccgg cgaggaccag accgcggcat
     1801 agaccatccc cggaacctgg gcgtcgaggc caaacttcgc cgagccgtcc agcttggtgg
     1861 ccgtgtcgag gcgcggggtc catttgccga ccagttggta tttgtccggc gtcttgatcg
     1921 ccggctcggc gggcagttgc acggccgccg cggtggcggc cagcgcgccg tagtccaggc
     1981 tgcggttcga ggccatgtgc aggcatttgc cggagctaac cgtgcagtcg gccgggtcga
     2041 tcttccagcg gtcggcggcg gccagcttca ggcgctcacg ggcgctggcg ccggcctgct
     2101 gcatcatcgt gaccgacgtg cgcaggccgc tcgaacccac cgtctgcatg cggccgtaga
     2161 ggttgccgcc ggcccgcgaa ttgcggttgg ccgaggcgta ctcgaccttc accttggtcc
     2221 agtcgcactc cagctcctcg gccaccagca tggccagcgc cgtggtggtg ccctggccca
     2281 tctcctgatg cggcacgcgg atggtcaccg tgttgtcggg ctcgatgatg acgaaggccg
     2341 tcatctcctt ggccgggttg gtcccgtcgg ccatgacggg cggctgcagc gcggcgctcg
     2401 cgacggcggg cacgccgatc accaaggcgc cggtcgctga gaggccggaa aagacgagtg
     2461 cgcggcgggt gagggcgatg tcgttcatgt gcgcgctccc ttcgtgcgcg cgccttgggc
     2521 cagagtggcc gcggctcggt gaacggcctt gcggatgcgc ggataggtgc cgcagcggca
     2581 gatgttggtg agcttggcgt cgatgtcggc gtcggtcggg ttgggagtgt ccttcaggag
     2641 ggccgccgcg gccatgatct ggccggactg gcagtagccg cactggggta cgtcctcggc
     2701 cagccaggcc tgctggaccg gatgcttgag cccggtggaa aggccctcga tcgtggtgat
     2761 ctggcccttc acggagccgg cgggggtgac acaggagcgg acgggcttgc catccacctg
     2821 cacggtgcag gcgccgcact gggcgatccc gcagccgaac ttcgtgccgg tcaggccgag
     2881 ctcgtcgcgt atgacccaga gcaggggtgc gtcaggctcc acatcgaggt cgtggcgttt
     2941 gccgttgacg gtgagcgtga tcatggctgg cgacctcccg ggaagggcaa ccctaccccc
     3001 aaacgcggcg cagggtcacg atggcgaaat tggcctgagg cgcaagatcc ccggacgtcg
     3061 gtccaagaac cgtcccgcat ccgcctgcga caaaataacc caaataattc agttatttca
     3121 tgcatctcat gccggtctgc gccgaacttc accatcctcc gcacaccgcc aaccttgact
     3181 ccagacgcct tcgacgccat ctggctccgt gcggatttag cgcgctgtga caggtatcga
     3241 ttcgggccgc cacgatttat cgggcgcgcc cctcggaaga gatcgagatg cctccctcga
     3301 agcgcggtga tcccagtggt cgcgcctctt cgcaggctcc ttttggggcc ggcggttcag
     3361 gacgacgcca ccgagcttcc ggtagggatt ccttcggagg actcgatgta tggcggcgtc
     3421 cgaacgcccg gagagcgagc gcggcgcact gacgcatacg atcaaagtac ggaacgaatt
     3481 gggcgggtga cgggtcgtag ggttacggcc gcatctctct gtccgaccgc agttaaccaa
     3541 ttccggccca ggccttgagt aaggtttggc gccgacttcg gagatttaga tgagcacgac
     3601 aaccgctgaa gccgaaacgc cagaaaccac cggcggcgac ggtccgctgc tcgacctgac
     3661 ggacgccgcg gtcaagaagt tcatcaagca ggccaaggcc cgcggctacg tcaccatgga
     3721 cgagctgaac aaggtcctgc cgtcggagga agtcacctcc gaggcgatcg aagacacgct
     3781 ggccatgctg tcggagatgg gcgtcaacgt cgtcgaggcg gaagaagacg ccgagggcgg
     3841 cggcgaagtg gccgtccgcg aagaatcggc ggtggtcgag accgccaagg aagccgccta
     3901 cgaccgcacc gacgacccgg tccgcatgta cctgcgcgag atgggttcgg tggagctgct
     3961 ctcccgcgag ggcgaaatcg ccatcgccaa gcgcatcgaa gccggccgcg acaccatgat
     4021 ccgcggtctg tgcgaaagcg cgctgacctt cgaagccatc atggtctggc gcgaggaact
     4081 gggctccggc cgcatcctgc tgcgcgaagt gatcgacctc gagcagacct acggcggcgt
     4141 caatgccgcg gccgccgagg agctggccgc caatgcgccg cccccggccg aggtcgagga
     4201 agccgagccc gagctcaacg ccgacggcga ggccatcccc aagagcgacg acgacgacga
     4261 cttcgacgat ggggccgggc ccaccatcag cgccatggaa ggcgagctgc gcgaaggcgt
     4321 gatgctcacg ctggacgcca tcgccgcgga gttcgagagc ttccgcctct tgcaggaaaa
     4381 gctggtcggc cagcgcctga agggccagga cctctccgac aaggaccgcg ccgcctatgt
     4441 gg
//
LOCUS       DATAJL010000421         1628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20306,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000421 DATAJL010000000
VERSION     DATAJL010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20306"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1021
                     /locus_tag="VHN39_08055"
     CDS             <1..1021
                     /locus_tag="VHN39_08055"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003952 - NAD+ synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0004359 - glutaminase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(+) synthase"
                     /protein_id="HEX2816331.1"
                     /translation="DCYEAFNIQVQGLTQRLRATKSKTLVIGISGGLDSTHALLVACK
                     AFDALGKPRAEILGFTMPGFATSEGTKSNAWALMNALGVTGQEIDIRPAALRVLEDIG
                     HPFAKGEKVYDVTFENVQAGLRTDYLFRLANQHSGFVLGTGDLSELALGWCTYGVGDQ
                     MSHYNVNGSLAKTLIQHLIRWTVKTGQFDGAAETLHAILDTEISPELVPADASGAIQS
                     TQAKVGPYELQDFSLFHITRFGLRPSKVAFLAWHAWRDVSLGAWPPNFPEGTRNAYDL
                     VAIKKWLGVFLFRFFEISQFKRSAMPNGPKVISGGALSPRGDWRAPSDGTARVWLDEL
                     EANVP"
     gene            complement(1018..1614)
                     /locus_tag="VHN39_08060"
     CDS             complement(1018..1614)
                     /locus_tag="VHN39_08060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEX2816332.1"
                     /translation="MAPVAGSLQSVCVFCGSSDAADPAYLRAAGDLGRALAAAKLRLV
                     YGGGGVGLMGATARAAHEAGGEVLGIIPDFLIGKERALETVEHVVVTSMHQRKQMFFE
                     ESDGFVILPGGIGTLEEVVELLSWRRLDLHSMPVVFYNPDNFWGPLFALFQHTVDAKL
                     TPPEFMGAWTVVDRVEDIVPALFAGPKAGSSPMLARLT"
BASE COUNT          284 a          562 c          538 g          244 t
ORIGIN      
        1 ggactgctac gaggctttca acatccaggt gcaggggctg acgcagcgcc tgcgcgccac
       61 caagagcaag accctggtca tcggcatctc cggcggcctc gattccaccc acgcgctcct
      121 ggtggcctgc aaggcgtttg acgccttggg gaaaccccgc gccgaaatcc tcggcttcac
      181 catgccgggc ttcgcaacca gcgaggggac caagtccaac gcctgggcgc tgatgaacgc
      241 gctcggcgtt accggccagg aaatcgacat ccggcccgcc gccctgcggg tgctggagga
      301 catcggccac cccttcgcca agggggagaa ggtctatgac gtgaccttcg agaacgtcca
      361 ggcggggctc agaaccgact atctgttccg gctggccaac cagcattccg gcttcgtgct
      421 ggggactggc gacctgtcgg agctggcgct gggctggtgt acctacggcg tcggcgacca
      481 gatgagccac tacaacgtca acggctccct ggcgaagacc ctgatccagc acctgatccg
      541 atggacggtg aagaccggcc agttcgacgg ggccgccgag accctgcacg ccattctcga
      601 caccgagatc tcgcccgagc tggtgcccgc ggacgcctcg ggcgccatcc agtcgaccca
      661 ggccaaggtc ggaccctacg agctgcagga cttcagcctg ttccacatca cccgctttgg
      721 cctcagaccg tccaaggtgg cgttcctggc ctggcacgcc tggcgtgacg tgagcctggg
      781 cgcgtggccg cccaacttcc cggaagggac gcgaaacgcc tacgacctcg tcgcgattaa
      841 aaagtggctg ggggttttcc tcttccgctt cttcgagatc agccagttca agcgctcggc
      901 catgccgaac gggcccaagg tgatctcggg cggggcgctc tcgccgcgcg gcgactggcg
      961 cgcaccctcg gacggcacgg cgcgggtctg gctcgacgag ctggaggcga acgttcccta
     1021 ggtcagcctg gccagcatcg gcgaggagcc cgccttgggt cccgcgaaca gggccggcac
     1081 gatgtcctcg acgcggtcga cgacggtcca ggcgcccatg aactctggcg gcgtcagctt
     1141 ggcgtcgacg gtgtgctgaa agagggcgaa cagcgggccc cagaagttgt cggggttgta
     1201 gaagacgacc ggcatcgagt gcaggtcgag ccggcgccag gacaggagct ccaccacctc
     1261 ttccagcgtg ccgatgccgc ccggcaggat gacgaaaccg tcggactcct cgaaaaacat
     1321 ctgcttgcgc tggtgcatcg aggtgacgac gacgtgctcc acggtctcca gggcgcgctc
     1381 cttgccgatc aggaagtcgg ggataatgcc cagcacctcg ccgccggcct cgtgcgcggc
     1441 gcgggccgtg gcgcccatca ggcccacgcc gccgccgcca tagaccagcc tgagcttcgc
     1501 cgcggccaac gcacggccga ggtcgcccgc ggcgcgcaga taggccgggt ccgcggcgtc
     1561 ggaggaaccg cagaacacgc agacggattg caggctgccg gcgacaggcg ccatcgatca
     1621 ctactcca
//
LOCUS       DATAJL010000422         4245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33450,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000422 DATAJL010000000
VERSION     DATAJL010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33450"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /locus_tag="VHN39_08065"
     CDS             <1..467
                     /locus_tag="VHN39_08065"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2816333.1"
                     /translation="SGHDNKGAVIPGGRNTYPEYAAASLWTTPSDYGRFFISLQDSYA
                     GRPRALLRPGSAKAMMTPVDANYGLGLALGRQGGHPFIQHGGSNAGFQSNAIAFLDGS
                     RQGVVVMTNGDLGFVLTAEITRAVAASYGWGEPDPATKGSNRRAPFLPPASK"
     gene            464..868
                     /gene="mutT"
                     /locus_tag="VHN39_08070"
     CDS             464..868
                     /gene="mutT"
                     /locus_tag="VHN39_08070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HEX2816334.1"
                     /translation="MTKPMLLVAAAALVDVDGRVLICQRPEGKQLAGLWEFPGGKVEA
                     GETPEACLIRELEEELGILVTHACLAPFVFASHDYETFHLLMPLYLVRRWEGTITAKE
                     HKALAWAKPGRLGDYPMPPADAPLVAWLRDLI"
     gene            908..2503
                     /locus_tag="VHN39_08075"
     CDS             908..2503
                     /locus_tag="VHN39_08075"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEX2816335.1"
                     /translation="MGHLARLAAGLAALALTAGSASAPQAQTGAWFGVPAPGPVSPPD
                     KPTFHTGPNAYGPAPAHVRPKDDMRGSLSGDRMMTDVRTIVDFSLARKAAGDPLWGRI
                     SGLPGEKAAVDWAVGKLKASGLKDARAEAYAFDTKLWLPVTWELKVLGDGAFGAGTAD
                     VVLRSAVPIRNVTVKPAAAEGPLVFVGRGSAAELANIDVKGKVAVVNVVPDDSLFAAR
                     EKGVARELEKRGAIGVINAVESPGNLLYYDNRYGCDAAPCFLVGGDDGAFLESVIGKA
                     AKAGKTVRMKLALQGEERAGLTAWNGVATIPGKSSEVVIVNAHADAWFDGADDNADGL
                     AVMLGLADYFAHRKEKPARTLVFMVSGGHHTAVGAAAFIKAHPDIVQKTVLVMNLEHL
                     AQIMVTQAARLDPAGPGGYDSGVWTANTTETTKQAGAVNASPYVWELMGKASKRYGVV
                     TSYEPTPSAPGDLGAYIRAGLPSAQLISSEVYYHSSGDTPSTISVPGLERAAAFYAGF
                     IEDVAKAPRGKLKGPPPPPAPAR"
     gene            complement(2500..2667)
                     /locus_tag="VHN39_08080"
     CDS             complement(2500..2667)
                     /locus_tag="VHN39_08080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816336.1"
                     /translation="MTDAPAAKTVEKHPGMMGDGTEEQNLSQKGDPAARITEAEVKDA
                     FGEKGPTPPKP"
     gene            2841..3050
                     /locus_tag="VHN39_08085"
     CDS             2841..3050
                     /locus_tag="VHN39_08085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816337.1"
                     /translation="MSVAHLKPIVGIHKNDPEWIIALWLAIHGGDGGPEISTQKAQLA
                     AAEAIRALAGHLGASQQKAVIAALH"
     gene            complement(3100..4059)
                     /locus_tag="VHN39_08090"
     CDS             complement(3100..4059)
                     /locus_tag="VHN39_08090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816338.1"
                     /translation="MTNISKSLGLAVACAIALAGCATRPEPPRRAAALPPSAHVAPPT
                     DRGLAVQASAFESFMRHARAIDAGFSGPSDVAQALQTGAGHEPKELEAGMIAYAAMAA
                     LQEPRFVAAVRAEHAGSEQERGDLARRLAENPQSALSLPGGEAAGARASGALYAQGSA
                     LSGEGEKVKHAAYSLQRNAWAKTKVPDAAGRLSRVKRISAEGYQPRREDPAELQMSLA
                     DGAHRGGAASPVVTRGVALAALSVLGEDGRARELMSEPRTGMCLRLAKLNLYQCLASA
                     GPHYEDIYCLGQHAMIDPGQCVVDATRAPASRQVAVTRASYRR"
BASE COUNT          622 a         1524 c         1473 g          626 t
ORIGIN      
        1 ccagcggcca tgacaacaag ggcgccgtca ttccgggcgg gcgtaacacc tatcccgagt
       61 acgccgccgc cagcctctgg acgacgccgt ccgactacgg gcggttcttc ataagcctgc
      121 aggactccta cgccggacgg ccgcgcgccc tgctgcgccc aggcagcgcc aaggcgatga
      181 tgacgcccgt cgacgccaac tatggcctgg gcctcgcgct ggggcggcag ggcggccatc
      241 cctttatcca gcacggcggc agcaacgccg gcttccagtc caacgccata gccttcctcg
      301 acgggtcgcg gcagggcgtg gtcgtcatga ccaacggaga tctcggcttc gtgctgacgg
      361 cggaaatcac ccgcgccgtg gccgcgagct atggctgggg cgaacccgac ccggccacca
      421 aggggtcgaa ccgccgcgcg ccgttcctgc cgccggcgtc caaatgacca aacccatgct
      481 cctggtcgcc gccgcggccc tggtggacgt cgacggccgc gtgctgatct gccagcggcc
      541 tgagggcaag cagctggcgg gtctctggga attcccgggc ggcaaggtcg aggcgggcga
      601 gacgccggag gcctgtttga tccgcgagct ggaggaggag ctgggaatcc tggtcaccca
      661 cgcctgcctc gcgccgttcg tcttcgcgag ccacgactac gagacgtttc acctgctgat
      721 gccgctctat ctcgtccgcc gctgggaggg gacgatcacg gccaaggaac acaaggcgct
      781 ggcctgggcg aagcccggca ggctcggaga ctatcccatg ccgcccgccg acgccccgct
      841 ggtcgcctgg ctgcgcgatc tgatttgatg gactaggctg cctaccaaca agggtagggg
      901 gacggccatg ggacacttgg caaggctggc ggccgggctc gcggccctgg cgctgacggc
      961 ggggtcggcg tcggcccccc aagcccagac cggggcctgg ttcggcgtgc ccgcgcctgg
     1021 cccggtcagc ccgcccgaca agcccacctt ccacaccggc cctaacgcct atggcccggc
     1081 gcccgcccat gtgcggccga aggacgacat gcgcgggtcg cttagcggcg acaggatgat
     1141 gaccgatgtc cgcacgatcg tggacttctc cctggcgcgg aaggccgccg gcgatccgct
     1201 ctggggccgg atcagcggcc tgccgggcga aaaggccgcc gtcgactggg cggtgggcaa
     1261 gctcaaagcc tcggggctga aggacgcccg cgccgaggcc tatgccttcg acaccaagct
     1321 ctggctgccg gtgacctggg agctgaaggt tctgggcgac ggcgcgttcg gcgcggggac
     1381 cgccgatgtg gtgctgcgct ccgccgtccc gatccgcaac gtcaccgtca aacctgccgc
     1441 cgccgagggt ccgctggtct tcgtgggccg gggctcggcc gccgagctcg ccaatatcga
     1501 cgtcaaaggc aaggtcgcgg tggtcaatgt cgtgcccgac gacagcctgt tcgccgcccg
     1561 cgaaaagggt gtggcgcgcg agctggaaaa gcgcggcgcc atcggggtga tcaacgccgt
     1621 cgagagcccc ggcaacctgc tctattacga caaccgctac ggctgcgacg ccgcgccctg
     1681 tttcctggtg ggcggcgatg acggggcctt cctggagagc gtcattggca aggccgcgaa
     1741 ggccggcaag actgtgcgca tgaagctggc cctgcagggc gaggagcgcg ccggcctcac
     1801 cgcctggaac ggcgtcgcaa ccatccccgg caagagctcc gaggtggtga tcgtcaacgc
     1861 ccacgccgac gcctggttcg acggcgccga cgacaacgcc gacggcctgg cggtgatgct
     1921 gggcctcgcc gactacttcg cccacaggaa ggaaaaaccc gcccgcacgc tggtcttcat
     1981 ggtctccggc ggccaccaca ccgcggtcgg cgcggccgcc ttcatcaagg cccatcccga
     2041 catcgtccag aagaccgtgc tggtgatgaa cctggagcac ctggcgcaga tcatggtcac
     2101 ccaggcggcg cggctcgatc cggccgggcc gggcggctac gacagcggcg tctggacggc
     2161 caacaccacc gagaccacca aacaggccgg ggcggtcaac gcctcgcctt acgtctggga
     2221 gctgatgggc aaggcgtcaa agcgctacgg cgtggtgacg agctatgaac ccacacccag
     2281 cgcgccgggc gacctggggg cctacatccg cgccggcctg ccctcggccc aactgatctc
     2341 cagcgaggtc tactatcact cgtccggcga cacgccctcg accatctcgg taccgggcct
     2401 ggagcgggcg gcggccttct acgcgggttt catcgaggat gtggccaagg cgccccgagg
     2461 aaagctgaag ggtccgccgc cgccgcctgc gcctgcgcgc tagggtttcg gcggcgtcgg
     2521 gcccttttcg ccaaaggcgt ccttcacctc ggcttcggtg atccgggccg cggggtcgcc
     2581 cttctggctc aggttctgct cctcggtgcc gtcgcccatc attccagggt gcttttcaac
     2641 ggtcttggcg gcaggcgcgt cggtcatggg aagtctcctg ttggaactct ctaacgggcc
     2701 gcggcgcccc tacgttccgc ctcgccaacc gcgtgaattc gcgtgtgagt tgtctcacgc
     2761 gcaggtgatt ccaactctag gtcgcggcgc gctacggctt ggccggggct gatatcaacc
     2821 cacaacccgg aggacctccc atgagcgttg ctcacctgaa gcccatcgtc ggtatccaca
     2881 agaacgatcc ggaatggatc atcgccctct ggctcgcgat ccacggcggt gacggggggc
     2941 cggaaatctc gacccagaag gcgcaactgg ccgccgccga ggccatccgc gcgctggccg
     3001 gccatctcgg cgcctcccag cagaaggcgg tcatcgccgc ccttcactga cgtcagcgcg
     3061 gtccctggcc ctcgcggaac gggggccgcg ctacgccgct tagcggcggt agcttgcccg
     3121 ggtgaccgct acctgccgcg aggcgggcgc gcgggtcgcg tcgaccacgc actggccggg
     3181 gtcgatcatg gcgtgctggc ccaggcagta gatgtcctcg tagtgcgggc cggcgctggc
     3241 caagcactgg tagaggttga gcttggcgag ccgcaggcac atgccggtgc gcggctcgct
     3301 catcagctcg cgcgcccgcc cgtcctcgcc gagcaccgac agcgccgcca gcgccacgcc
     3361 gcgggtcacc accgggctcg ccgcgccgcc acggtgcgcg ccgtcagcca gcgacatctg
     3421 cagctcggcc ggatcctcgc ggcgcggctg atagccctcc gcggagatgc gcttcacccg
     3481 gctgagccgc cccgcggcgt ccgggacctt ggtcttggcc caggcgttgc gctgtaagga
     3541 ataggccgcg tgcttgacct tctcgccctc gccgctgagc gccgagccct gcgcatagag
     3601 cgcgcccgag gcccgcgcgc cggccgcctc gccgccgggc agcgacaggg cggattgcgg
     3661 attctcggcc agccggcggg ccaggtcgcc ccgttcttgc tcgcttccgg catgctcggc
     3721 gcggactgcg gccacgaagc gcggctcctg cagggcggcc atggccgcat aggcgatcat
     3781 cccggcttcc agctccttcg gctcgtggcc ggcgccggtc tgcagggcct gggcgacgtc
     3841 cgaggggccg gagaagccgg cgtcgatggc ccgcgcgtgg cgcatgaagc tctcgaaggc
     3901 gctggcctgg acggcgaggc cgcggtccgt gggcggcgcg acatgggcgg agggcgggag
     3961 cgctgcggcg cggcgaggcg gctcaggccg ggtggcgcag ccggccagcg caatggcgca
     4021 ggccacggcc aggcccaggc tcttggagat gttcgtcact atcgaccccc gacgtcagga
     4081 gccccccgaa acgccaccgt gggtcagacc cctcgttgcg tcgccgtggc cagttgtcgc
     4141 gacgcccggt ttacggatcg tcaccaagct tggccgttca ctcctcccgg ggcagccggt
     4201 gctcgacggt tcccagcgcg tcggccagcc gcatcctggc cgacc
//
LOCUS       DATAJL010000423         3852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46196,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000423 DATAJL010000000
VERSION     DATAJL010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46196"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            26..649
                     /gene="thiE"
                     /locus_tag="VHN39_08095"
     CDS             26..649
                     /gene="thiE"
                     /locus_tag="VHN39_08095"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEX2816339.1"
                     /translation="MITPPRLDDLAAFGHVLAHALDAGDVAALQIRLKDQPDDIIAAA
                     TDALMPIAQARGVAVILNDRPDLAASLGCDGVHVGQDDMPLANARRIVGPDRMIGVTC
                     HDSLHLAMEAAEGGADYVAFGAFFPTTTKDASTRADPELLTGWQLDMVIPCVAIGGIT
                     VETAAGLAAAGADFLAVSAGVWSHGEGPAAAVSAFNTEIAKGLAARG"
     gene            723..1520
                     /locus_tag="VHN39_08100"
     CDS             723..1520
                     /locus_tag="VHN39_08100"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008934 - inositol monophosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006020 - inositol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0046855 - obsolete inositol phosphate
                     dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEX2816340.1"
                     /translation="MSTQSALLKVMTDAARKAARGLNRDFGELAELQVAKKAPADFVS
                     AADLKAEQTIFEALEKARPGYSFLGEERGMIEGTDKTHTWIVDPLDGTTNFLHAIPHF
                     AINIALQREGAIVAAVTLNPVANELFWAEKGKGAFVNDKRLRVAARTKMEEAVLATGI
                     PFMGHGQHATFLKELHQISQRVAGVRRFGAAALDLAWVAAGRYDGYWERDLHAWDLAA
                     GVLLVTEAGGRVTTAEGEDDVLAAGSVCAGNLELQPQILERLRQAAK"
     gene            1587..2675
                     /locus_tag="VHN39_08105"
     CDS             1587..2675
                     /locus_tag="VHN39_08105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEX2816341.1"
                     /translation="MDITRRTLGATAAAVAATAALPVPSSAWADAPDFHQGFKKKPLI
                     IGHRGASGERPESTLMSFRLAIAEGADFIEPDLVVTKDGHFVVRHENEISQTTDVALR
                     PEFESRLTTRQIQGQAVSGWFTEDFTLEELKTIRCRERLPKLRPESVKFNGQESIPTY
                     QEVIDLAKSESARLKRVIGTYPEMKHASYFAGIGLPMEARLADILKKNDLDGASAPVF
                     IQCFDVLPLKTIMTLCKAPRIQLVSPDGGPTDVTLRYRDMVSASGMKTIAAYANGVGP
                     DWSMVIPTVDGGLGPASALVTDAHAAGLAVHPWTVRAENVFLPPKLRSGTDPMVHGDV
                     DAVYHALYAAGIDGLFSDFPGLAVKARG"
     gene            2675..3013
                     /locus_tag="VHN39_08110"
     CDS             2675..3013
                     /locus_tag="VHN39_08110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816342.1"
                     /translation="MTASHPLDAMAVARDHHFVLLENDQVRVLDTRLGPGGRTPVHAH
                     EWPAALYVLSWSDFVRYDPDGKVLVNSKTMMASPPEPGGALWSAPLPPHYVQNVGDRD
                     LHIIAVEMKA"
     gene            complement(3010..>3852)
                     /locus_tag="VHN39_08115"
     CDS             complement(3010..>3852)
                     /locus_tag="VHN39_08115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2816343.1"
                     /translation="VQKAAGAMERVSEILDARPGIAAPTYPVALPVPSRGEIALENVT
                     FAYPGRPDMPAVRGLSLSVKPGERVALVGPSGAGKSTVFRLLLRFYDPQTGRVLVDGV
                     DVREADPVEVRARMALVAQESPLFSGSALDNVRFGREDASLKDVQAAVRAAQAETFLA
                     ALPEGIDTQIGERARSLSGGQRQRLAIARALVRHAPILLLDEATSALDAENERLVQRA
                     LDEAMVGHTTLVIAHRLATVLKADRIVVMDEGRVVEEGTHHELVARNGLYARLASLQF
                     GEAA"
BASE COUNT          613 a         1398 c         1289 g          552 t
ORIGIN      
        1 ggccacgccg ctctgccgcc tttacctgat caccccgccc cggctcgacg acctggcggc
       61 gttcggccac gttctcgccc atgcgctcga cgccggcgat gtggccgccc tgcagatccg
      121 cctgaaggac cagcccgacg acatcatcgc cgccgccacg gacgcgctca tgcccatcgc
      181 ccaggcccgc ggcgtcgcgg tgatcctcaa cgaccggccg gacctggcgg cctcgctggg
      241 ctgcgatggc gtgcacgtgg gccaggacga catgccgctt gcgaacgcgc gccgtatcgt
      301 cggccccgat cggatgatcg gcgtcacctg ccacgacagc ctgcatctgg ccatggaggc
      361 cgccgagggc ggcgccgact atgtggcatt cggggccttc ttccccacca ccaccaagga
      421 cgcctccacc cgcgccgatc cggagctcct gaccggctgg cagctcgaca tggtgatccc
      481 ctgcgtcgcc atcggcggga tcacggtgga gaccgccgcc gggctcgcgg ccgcgggcgc
      541 cgatttcctg gccgtatcgg caggcgtctg gagccatggt gagggcccgg ccgcggcggt
      601 ctccgccttc aataccgaga tcgccaaagg gctggccgcc cgcggctgag acctcgcctt
      661 gcgtcgcggg cgaccggcga ctaggttccg cgccctctag acgccccgag atctttcaca
      721 ccgtgagcac ccagtccgcc ctcctgaaag tcatgaccga cgccgcgcgc aaggccgcgc
      781 gcgggctcaa ccgcgacttt ggcgaactgg ccgagttgca ggtggccaag aaggcgcccg
      841 ctgacttcgt ctccgccgcc gacctgaagg ccgagcagac catcttcgag gccttggaaa
      901 aggcccgccc aggctacagc ttcctgggcg aagagcgcgg gatgatcgag ggcaccgaca
      961 agacccacac ctggatcgtc gacccgctcg acggcaccac caacttcctg cacgccatcc
     1021 cgcacttcgc catcaacatc gcgctgcagc gcgagggcgc gatcgtggcg gccgtgacgc
     1081 tgaaccccgt cgccaacgag ctgttctggg ccgagaaggg caagggcgcc ttcgtcaacg
     1141 acaagcgcct tcgggtcgcg gcgcggacca agatggaaga agcggtgctc gccaccggca
     1201 tcccgttcat gggccacggc cagcacgcca ccttcctgaa agagctgcac cagatcagcc
     1261 agcgggtggc cggcgtccgc cgcttcgggg ccgccgccct cgacctcgcc tgggtcgcgg
     1321 ccggccgcta tgacggctac tgggagcgcg acctgcatgc ctgggacctg gcggcgggcg
     1381 tcctgctggt gaccgaggcc ggcggccggg tcaccaccgc cgagggcgag gacgatgtgc
     1441 tcgccgcggg ctcggtctgc gccggcaacc tcgaactcca gccgcagatc ctcgaacgcc
     1501 tgcgccaggc ggcgaagtag cgcgatcggt tgacccgtcc ccgtctgagt gactgactgt
     1561 cacaaacgat gagtaggggg aacgccatgg acatcacccg ccgcaccttg ggcgcgacgg
     1621 cggcggcggt cgccgcgacc gcagccctgc ccgtaccctc atctgcctgg gccgacgctc
     1681 cggacttcca ccagggtttc aagaagaagc cgctgatcat cggccaccgc ggggccagcg
     1741 gcgagcggcc cgagagcacg ctgatgtcgt tccggctggc catcgccgag ggcgccgatt
     1801 tcatcgagcc ggatctggtg gtgaccaagg acggccactt cgtggtgcgc catgagaacg
     1861 agatctccca gaccaccgac gtggcgctgc gtccggagtt cgaaagccgc ctcaccaccc
     1921 gccagatcca gggccaggcg gtgtcgggct ggttcaccga agacttcacg ctcgaggaac
     1981 tgaagaccat ccgctgccgc gagcggctgc cgaaactgcg gccggagagc gtcaagttca
     2041 acggccagga atccatcccg acctaccagg aggtgatcga cctggcgaag tcggagagcg
     2101 cgcggctgaa gcgcgtgatc ggcacctatc cggagatgaa gcacgccagc tatttcgccg
     2161 gcatcggact acccatggag gctcgcctcg ccgacatcct gaagaagaac gacctcgacg
     2221 gcgcctcggc gccggtcttc atccagtgtt tcgacgtcct gccgctgaag accatcatga
     2281 ccctgtgcaa ggcgccacgc atccagctgg tctcgccgga cggcggcccg accgacgtca
     2341 ccctgcgcta ccgggacatg gtctcggcct ccggcatgaa gaccatcgcg gcctacgcca
     2401 atggcgtggg gcccgactgg tcgatggtga tcccgaccgt cgacggcggc cttggccccg
     2461 ccagcgcgct ggtgaccgac gcccatgccg ccggcctggc ggtgcacccc tggacggtgc
     2521 gggccgagaa cgtcttcctg ccgcccaagc tgcgaagtgg gaccgacccg atggtccatg
     2581 gcgacgtaga cgcggtctat cacgccctct acgccgccgg catcgacggc ctcttcagcg
     2641 atttcccggg cctggcggtg aaggcgcggg gctagtgacc gcgtcccacc cactcgacgc
     2701 catggcggtc gcccgggacc accatttcgt gctgctggaa aacgatcagg tccgggtgct
     2761 cgacacacgt cttggccccg gcggccgaac gccggtgcat gcgcatgaat ggcccgccgc
     2821 actctacgtg ctgagttgga gcgacttcgt ccgctacgac cccgacggca aagtgctggt
     2881 caattccaag accatgatgg caagcccgcc cgagccgggc ggcgccctat ggtcggcccc
     2941 attgccgccg cactacgtgc agaacgtcgg cgaccgcgac ctgcacatca tcgccgtcga
     3001 gatgaaagcc taagccgcct cgccgaactg cagggatgcc agccgcgcgt agaggccgtt
     3061 cctggccacc agttcgtggt gcgtgccttc ctcgaccacc cggccttcgt ccatgaccac
     3121 gatgcggtcg gccttcagca ccgtcgccag gcggtgggcg atgaccaggg tggtgtggcc
     3181 aaccatggcc tcgtccagcg cccgctgcac cagccgttcg ttctcggcgt cgagcgcgct
     3241 ggtggcctcg tccagcagca ggatcggggc gtggcggacc agcgcgcggg cgatggccag
     3301 gcgctggcgc tggccgccgg agaggctgcg ggcgcgttcg ccgatctggg tgtcgatacc
     3361 ctcgggcagg gcggccagga aggtctcggc ctgggcggcg cggacggcgg cctgcacgtc
     3421 tttgaggctg gcgtcctcac ggccgaagcg gacgttgtcc agcgccgagc cggagaacag
     3481 cggcgattcc tgggcgacca gcgccatgcg ggcgcggacc tccaccggat cggcctcacg
     3541 cacgtcgacg ccgtccacca gcacccggcc ggtctgcggg tcgtagaagc gcagcaatag
     3601 ccggaagacc gtactcttgc cggccccgga cggccccacc agcgccaccc gctcgccagg
     3661 cttgacggag agcgacaggc cgcgcaccgc cggcatgtcc gggcggccgg gataggcgaa
     3721 ggtgacgttc tccagcgcga tctcgccgcg cgacgggacc ggcagggcga ccggataggt
     3781 gggcgcggcg atgccgggtc tggcgtcgag aatctcggag acccgctcca tggcgccggc
     3841 ggccttctgc ac
//
LOCUS       DATAJL010000424         1532 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_81853,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000424 DATAJL010000000
VERSION     DATAJL010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81853"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..829
                     /locus_tag="VHN39_08120"
     CDS             <1..829
                     /locus_tag="VHN39_08120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEX2816344.1"
                     /translation="HRDDIGDLTTRRPVPGPALEQVDPFLFLNHHGPQTYGPNNEGLP
                     FGPHPHRGFETVTFILEGELAHRDSAGHESVIRAGGVQWMTAGSGLIHAEVSPEAFKT
                     AGGPLELLQLWINLPGRLKMSPPRYVGLQGDEIPAIAVDQGQATVNLISGTWSGRTGP
                     IPSLTGVFMTTIALKAGGKAGFGSLGGRNVFLYVVSGEVKANGTPVPAWTLAQFDLTG
                     DMLEIVAAKDAVVLFGHGEPIGEPVFAHGPFVMNTRQEIVDAIADYNAGLFDNVSAA"
     gene            complement(992..>1532)
                     /locus_tag="VHN39_08125"
     CDS             complement(992..>1532)
                     /locus_tag="VHN39_08125"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2816345.1"
                     /translation="SYHRPLPLAASLGAHVISVSSLSKAYGVPGIRIGWLITSDPDLQ
                     EIFLAASEQISICGSVMDAWVAEQVMENRQAILRPRLVEMRRRLALVGDWMAGEDRLE
                     WVKPSGGVVCFPRMTAEPAGGTEGFYRRLLEDHGAYVGPGHWFERPDSSFRLGYGWPT
                     SQDLEAGLAAISAALRGGG"
BASE COUNT          260 a          552 c          494 g          226 t
ORIGIN      
        1 ccaccgcgac gacatcggcg acctgaccac gcgccgcccc gtgccggggc ccgctctgga
       61 gcaggtcgat ccgttcctgt tcctgaacca ccacggcccg cagacctatg ggccgaacaa
      121 cgaaggcctg cccttcggac cgcacccgca ccgcggcttt gagacggtga ccttcatcct
      181 ggagggcgag ctggcgcatc gggactcggc cggccacgag agcgtcatcc gcgccggcgg
      241 cgtccagtgg atgaccgcgg gctcgggcct gatccacgcc gaagtctcgc cggaagcctt
      301 caagacggct ggcggcccgc tcgagctcct gcagctctgg atcaacctgc ccggccgcct
      361 gaagatgagc ccgccgcgct atgtcggcct gcagggcgat gagatccccg ccatcgccgt
      421 cgaccagggc caggccacgg tgaacctgat ctccgggacc tggagcgggc gcacgggccc
      481 aatcccttcc ctcaccggcg tcttcatgac gaccatcgcg ctgaaggccg gcggcaaggc
      541 cggtttcggc tcgctcggcg gccgcaacgt cttcctctat gtggtctccg gcgaggtgaa
      601 ggcgaacggg acaccggtgc cggcctggac gctggcgcag ttcgacctga cgggcgacat
      661 gctggagatc gtggccgcca aggacgccgt cgtcctgttc ggccacggcg aaccgatcgg
      721 cgaaccggtc ttcgcccacg gccccttcgt gatgaacacc cgccaggaga tcgtcgacgc
      781 catcgccgac tataacgccg gcctcttcga caacgtcagc gcggcctagt gcgctggatt
      841 tgaagttcgc ctcattcagg gccgagcacc gagcgaattt caaaaccaaa gaagcacact
      901 agaaacatag gcttgctagt gtcctcatcg attccgaagt tcgtcccgcg ccggccgcaa
      961 gcgcctgcga acttcggaat cgatgaggac actagcctcc gccgcgcagg gccgccgaga
     1021 tcgccgccag ccccgcctcc aggtcctgcg aagtcggcca gccgtagccg agccggaagg
     1081 agctgtccgg ccgctcgaac cagtggccag ggccgacata ggcgccgtgg tcttccagga
     1141 gtcggcggta gaagccctcc gttccacccg cgggctcggc cgtcatgcgc gggaagcaga
     1201 ccactccgcc gctgggcttc acccactcca gccggtcctc gccggccatc cagtcgccga
     1261 ccagggcgag gcggcggcgc atctcgacca gccggggccg gaggatcgcc tgtcggttct
     1321 ccatcacctg ctcggccacc cacgcgtcca tgacgctgcc gcagatgctg atctgctcgc
     1381 tggccgccag gaagatctcc tgcaggtcgg gatcggaagt gatcagccag ccgatgcgga
     1441 tgccgggaac gccataggcc ttggagagcg acgagacgct gatcacatgc gcccccagcg
     1501 aggcggccag cggcaggggc ctgtggtagg ac
//
LOCUS       DATAJL010000425         2020 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20369,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000425 DATAJL010000000
VERSION     DATAJL010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20369"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..340)
                     /locus_tag="VHN39_08130"
     CDS             complement(<1..340)
                     /locus_tag="VHN39_08130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEX2816346.1"
                     /translation="MTAADPTCAQTALDAFQGDRAYLGADHRRNERRTWIVTAICTVT
                     LAAQVAGGMVFRSMALTAAGLHMAAHVAALLVAAGAYALARRHATSPRFAFGTGKIGY
                     LAGFANALVLG"
     gene            454..951
                     /locus_tag="VHN39_08135"
     CDS             454..951
                     /locus_tag="VHN39_08135"
                     /inference="COORDINATES: protein motif:HMM:NF013923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX2816347.1"
                     /translation="MRQSIEFSLNGRPARVEAEETELLLDVLRGPLELYGARFGCGAG
                     QCGACAVLVDGASVFACVTEVGAVAGRAVITIEGLGTPEAPHPLQAAFLELQAGQCGY
                     CLSGLLIGAKALLDANPDPTREEIAHALDGHLCRCGVHNRVMDAVALAAQRLRDGRLR
                     EGAPA"
     gene            948..>2020
                     /locus_tag="VHN39_08140"
     CDS             948..>2020
                     /locus_tag="VHN39_08140"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX2816348.1"
                     /translation="MIPAMLASNPRLDRWVCFESDGRVRIAFGRMEYGQGIATALAQM
                     AADELDAPFARLRVVPAATGDIPDEGLTVGSMSIEFSGPAIRTACAEVRSLFTAAAAA
                     RLSCDPTELDVRDGAFLKGGEDTGLDYWRLAGEVDLAREATGEVSLKTPDRMRIVGES
                     EARLDLPPKLFGAAFLHDLTLPGMRHARVLRQPSPQATLKSLDEAAIRRAVPDVDILI
                     DHAFVALICETEADAARAHGAAGTAARWEGVRTMDPALSEPAALKTLAHEDFEAGAPR
                     AGPSNRRRITASYGKPFLSHGSLGPSAGLAHYQDGKLTIWTHNQGVYPMRSLAARITG
                     LAPEAIEVIHGQGPGCYGHNGAD"
BASE COUNT          291 a          742 c          713 g          274 t
ORIGIN      
        1 tgcccaggac gagcgcgttc gcgaaccccg ccagatagcc gatcttgccg gtcccgaagg
       61 cgaaccgcgg gctcgtcgcg tggcggcggg caagcgcata ggcgccggcg gcgaccagaa
      121 gggccgcgac atgggcggcc atgtgcaggc cggcagcggt cagggccatg gagcggaaga
      181 ccatcccgcc cgccacctgg gccgcaagtg tcacggtgca gatcgccgtc acgatccagg
      241 tccgccgctc gttgcggcga tggtcggcgc ccaggtaggc gcggtcgccc tggaaggcgt
      301 cgagggcggt ttgggcgcaa gtggggtcgg cggcggtcat gaagtgttat tctataacac
      361 cctgtcgaag gcaaggcgag accatgcggg gaccgggaag gttgccagcc ggcgccatgg
      421 gcgatgtagt gcgtccgacc tcggaggcca ggcgtgcggc agagcatcga attcagtttg
      481 aacggccgcc cggcccgggt tgaagccgag gagaccgagc tccttctcga tgtcctgcgc
      541 gggcccctgg agctctatgg cgcccggttc ggttgcggcg cgggccagtg cggcgcctgc
      601 gcggtgttgg tggacggcgc ctcggtcttc gcctgcgtca ccgaggtcgg cgcggtcgcc
      661 ggccgcgccg tcatcaccat cgagggcctt gggacgccgg aagctccaca cccgctgcag
      721 gcggctttcc tggagctgca ggctggccag tgcggctatt gcctgtcggg tctcctgatc
      781 ggcgccaagg cgctgctgga cgccaacccc gatccgaccc gcgaggagat cgcccacgcg
      841 ctggacggcc atctgtgccg ctgcggcgtg cacaaccggg tgatggacgc tgtcgcgctc
      901 gcggcccaga ggctgcgaga cgggcgcctc cgcgaaggcg cgcccgcatg atccccgcca
      961 tgctcgccag caacccccgc ctcgaccgct gggtctgctt cgaatccgac ggtcgcgtcc
     1021 gcatcgcctt cggccgcatg gaatacggcc aggggatcgc cacggcgctg gcgcagatgg
     1081 cagccgacga gctcgacgcg ccgttcgccc ggctgcgcgt ggttcccgcg gccaccggcg
     1141 acatccccga cgagggcctg accgtgggct ccatgtctat cgagttctcg ggcccggcga
     1201 tccgcaccgc ctgcgccgag gtccgcagcc ttttcaccgc cgcagccgcc gccagactga
     1261 gctgcgaccc caccgagctg gacgtccgcg acggcgcgtt cctcaagggc ggcgaggaca
     1321 caggtctcga ctactggcgc ctggccggcg aggtcgacct cgcgcgcgaa gccaccggcg
     1381 aggtttcgct gaagacgccg gaccgcatgc ggatcgtggg cgaaagcgag gcccgcctcg
     1441 acctgccgcc caaactgttc ggagccgcgt tcctgcacga cctgacgctg cccgggatgc
     1501 gccacgcccg ggtgcttcgc cagcccagcc cgcaggcgac gctcaagagc ctcgacgagg
     1561 ccgccatccg ccgcgccgta cccgacgtcg acatcctgat cgaccacgcc ttcgtggccc
     1621 tgatctgcga gaccgaggcc gacgcggcgc gcgcccacgg cgccgccggg accgccgccc
     1681 gctgggaggg cgtgcgcacg atggacccgg cgctcagcga gcccgccgcg ctcaagaccc
     1741 tggctcacga ggatttcgag gccggtgcgc cgcgggccgg gccctccaac cgccgccgca
     1801 tcaccgcgtc ctacggcaag cccttcctca gccacggctc cctgggcccc tcggcgggcc
     1861 tcgcccacta ccaggacggc aagctgacca tctggacgca caatcagggc gtctatccga
     1921 tgcggtcgct ggcggcgcgg atcaccggcc tggcgcccga ggccatcgag gtgatccatg
     1981 gccagggccc gggctgctac ggccacaacg gcgccgacga
//
LOCUS       DATAJL010000426         7505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46210,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000426 DATAJL010000000
VERSION     DATAJL010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7505
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46210"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..468
                     /locus_tag="VHN39_08145"
     CDS             <1..468
                     /locus_tag="VHN39_08145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816349.1"
                     /translation="ATHRDFDDAERAAYALTLAGEAPSYTKVELPDDLPFDWARALKK
                     CAGNFHKRRVAMNLSPAIDIYLEVVSWPERAPRFVYKLAMDSDAGAMVGVVAADDRAR
                     LTYTIDEKLLFSLVTGLVSWNAMEASALMPIRRSPDVYEHDLHRSIVHFSLLA"
     gene            complement(470..1120)
                     /locus_tag="VHN39_08150"
     CDS             complement(470..1120)
                     /locus_tag="VHN39_08150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816350.1"
                     /translation="MSPHSEPPVEAGADDVQARPHHTGVRWFDFVLALSAIFISAVSL
                     AVAIEHGRTERDLVAANSWPFLRAVLSNGGREAPGEQSVVIGVSNGGVGPAKLESFEV
                     FYRGQAANSGLDLMRRCCGLGPTDDDVKRQMPSGHHFEITDHTVLRPGEAKATFGVRR
                     GAEVGDRFAGVLTELKFRACYCSILDECWVSNLLDTHTQSVKACPEPKVRFNPFGR"
     gene            complement(1166..2833)
                     /locus_tag="VHN39_08155"
     CDS             complement(1166..2833)
                     /locus_tag="VHN39_08155"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX2816351.1"
                     /translation="MNAALLFEPDGYLLTGPSLMGRQSAGNGFLRAAVQAAGDQPLAA
                     YTAYRHSAEVFQRTVAGIDPRVATTWIPGPRLDLLAQAGVLYRPDVVLWPNARHRLRQ
                     GPAAYSLCGVTHTLATASTPDVIGRMLTEPLMPWDALVCTSTAALAVVTGVLDRQADY
                     LRWHARQGGGQASLAQRPLLPVIPLGVHCADFAFSEADRGEARAALGLGPDDVAALFA
                     GRLSVSGKSHPYAMFHALQRTAQETGKPVVLVIAGQAFSEGMDGLFRSGLTAFCPDVR
                     TVFVDGKDAAAYRGAWAGADIFISLADSIQETFGITPLEAMAAGLPALVSDWNGYKDT
                     VRDGVDGFRIRTWAPQPGAGEAMAVGFETGALGYEQYLSRSNTAVAVDTAELARRLGE
                     LVADPALRRRLGVAGQARAREAFDWSVVFRRYQDLWDEQTAIRRKAAEDPQTATWLAA
                     APRSGSDHMGPFDTFASYPTLHVTAATMVSPVPGVTKESYRDLIAQDINALWKVMPEV
                     ADRVLAVLERGPASVADIAAATGMEPFMTMEVVTRLAKIDVVALAAE"
     gene            complement(3021..4580)
                     /locus_tag="VHN39_08160"
     CDS             complement(3021..4580)
                     /locus_tag="VHN39_08160"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2816352.1"
                     /translation="MRASTFLAAATASAGLLGLSPAPRAQTAGPAAQEASPLTAAVAP
                     CAPAAFLIVEQGKLAGVDWVEHLGPRIHSRTILTQSLTIDATIDLRPDQTAAHSSVVL
                     TTAGEAPQAPRARDLGDGAIYWSDFVVSSVEQAVARARVLDRPISHVLATSFYRDAPS
                     DVLVERIDATDWAVTYRDKRYQVLTDERGCMLAATLPDYGVVIERRAEFAAGRYLPWP
                     AYAAPPDHAYRAAQVSIAAPQGHRLAATLTLPRRAGRAPAVVLITGLGPSERNGGSPP
                     WMPLRDLADALTRAGVAVLRVDDRGIGKSTGDHAPSTTLDEAADVQTEVAWLRSRPGI
                     DPKRIALVGYSEGGLIAPMVAARDPAIAAIVTLAGPGVPGPQLAREQIAQIVDHDPTV
                     AAADRDKEIARQLADPLTPREQSFLALDPLGFARLVRCPALILQGGSDITVPIRSAER
                     LAAAMREGGNPDVTVRIIPGVSHALLPDPVGVSTRWLYLPGFETSPQLLDVLTRWTVS
                     HLAPGQGAAGH"
     gene            complement(4577..5191)
                     /locus_tag="VHN39_08165"
     CDS             complement(4577..5191)
                     /locus_tag="VHN39_08165"
                     /inference="COORDINATES: protein motif:HMM:NF024248.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2816353.1"
                     /translation="MEPSAPPYVVRTKKQLSALASSARQEIVDVLANAGAISVAELAS
                     ALGRHADALYYHLKVLRQAGLVLSAGHRGRGKHREELIRSVSADLRLPYELGEGGNRG
                     EISAIVASMLRLGIRDFDHAFAFGDVKVSGADRELLALRKIGWLTPDEVGDVNRSIAE
                     LAQIAAGPPGRGRLYAITILLTPLDHRAHPGGKAARAARKAKPP"
     gene            complement(5285..5830)
                     /locus_tag="VHN39_08170"
     CDS             complement(5285..5830)
                     /locus_tag="VHN39_08170"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2816354.1"
                     /translation="MIVREATEADAEALAAIYGDAVLNGFGTFEEEPPTPADMDGRRR
                     AVQDRGLPYLIAELDGRVLGFAYAGPFRPRAAYRYTLEDSVYVSPNAKGQGVGRAVLS
                     AVIEACEALGIRQLMAVIGDTENAGSIGLHRALGFEQTGVGRSVGFKHGRWVDIVHMQ
                     KALNGGDTLPPSGGGVTLTGH"
     gene            complement(5827..>7505)
                     /locus_tag="VHN39_08175"
     CDS             complement(5827..>7505)
                     /locus_tag="VHN39_08175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX2816355.1"
                     /translation="ASHSPDHALYAWAADEQGSEYYTIRIKDLATGEELGTPVESAYG
                     DLAFSPDSRWIFWIWRDENARPSKVFRRPARPDKDWGGEDVLVYEEVDEGMFLGVGAT
                     SDDSHVVIHVGNQETTEIWLIPATDPTAAPVLAEPRSVGVKYSLDHWTDRWVIRTNAD
                     GAVDFKLSISDAAVPARATWRDWIAYQPGRYITGFAAFAGHLVRAERVNALDRLVVTA
                     RAGAEHEIAFDEEAYALNLEGGYEYDTATTRFVYQSPTTPRQTYDYDMATRARTLRKT
                     QEIPSGHDPSRYVARRLYAKAGDGQDIPITVLMLKDTPLDGAAPLLLYGYGAYGIAMD
                     PSFSIRNLSLVDRGWIWATAHIRGGSDKGWGWFLDGRKEKKPNTFTDFIACADHLAHE
                     GYATKGRIAAYGGSAGGMLMGAVANLRPDLWGAIIAAVPFVDVLNTMSDTTLPLTPPE
                     WPEWGNPLEDPAAYDLIASYSPYDQVSAQAYPPVLATGGLSDPRVTYWEPEKWIAKLR
                     EYSTGDAPMLLKINMDAGHGGASGRFDFLKEIALDYAFAVWALEKGWEKA"
BASE COUNT         1130 a         2449 c         2794 g         1132 t
ORIGIN      
        1 gccacacacc gggacttcga cgacgcggag cgagcggcct acgcgctgac gctcgcgggc
       61 gaggcgccta gctacacgaa ggtcgagctg ccggacgacc tgccgttcga ctgggcgcgc
      121 gcgctcaaga agtgcgccgg caatttccac aagcgccggg tcgcgatgaa cctgtcgccg
      181 gccatcgaca tctatctgga ggtggtgagc tggcccgagc gggcgcccag gttcgtctac
      241 aagctcgcca tggattcaga cgccggcgcc atggtgggcg tggtggctgc cgacgaccgc
      301 gcgcggctga cctacacaat cgacgagaag ctgctgttca gcctcgtcac cggtctggtg
      361 agctggaacg ccatggaggc cagcgcgctg atgccgatcc gacgcagccc tgacgtctac
      421 gagcacgacc tgcaccgctc gatcgtgcac ttctctctgc tggcctgagc tatcgcccga
      481 acgggttgaa ccgaaccttg ggttccgggc aggccttcac ggactgggta tgggtgtcga
      541 gcaggttcga cacccagcac tcgtcgagga tcgagcagta gcaggcgcgg aacttgagct
      601 ccgtcagcac cccggcgaaa cggtcgccca cctccgcgcc gcggcgcacg ccgaaggtcg
      661 ccttggcctc gccggggcgg agcaccgtgt ggtcggtgat ctcgaagtgg tgaccgctcg
      721 gcatctggcg tttcacgtcg tcgtcggtgg gcccgagccc gcagcagcgg cgcatgaggt
      781 cgaggccgga gttggcggcc tgaccccggt agaagacctc gaaactctcc agcttggccg
      841 ggccgacgcc gccgttggag acgccaatga ccaccgactg ctcgcccggc gcctcgcggc
      901 cgccattgct cagcacagcg cgcaggaagg gccaggagtt ggcggccacc aggtcgcgct
      961 cggtgcggcc gtgctcgatg gcgacggcga gcgagacggc ggaaatgaag atagccgaca
     1021 gcgccagcac gaagtcgaac caccgcaccc cggtgtggtg cgggcgggcc tggacatcgt
     1081 cggcgccggc ctcgaccggc ggttcgctgt gcggcgacat ggccaagttc tagcacgtgg
     1141 cccggagagt cgcatccgtg gccccctatt cggcggccag cgccaccaca tcgatcttcg
     1201 ccagccgcgt gaccacctcc atcgtcatga aaggctccat ccccgtggcg gcggcgatgt
     1261 ctgcgacgct ggccggcccg cgctccagga cggcgaggac gcggtcagcc acctcaggca
     1321 tcaccttcca gagggcgttg atgtcctggg cgatcaggtc tcggtagctc tctttcgtga
     1381 cgcccgggac cggtgagacc atggtcgcgg cggtgacatg cagcgttgga tagctggcga
     1441 aggtgtcgaa ggggcccatg tggtcggagc ccgaacgggg cgcggcggcg agccaggttg
     1501 cggtctgcgg atcctcggcc gccttgcggc ggatcgccgt ctgctcgtcc cacaggtcct
     1561 ggtagcggcg gaacaccacg gaccagtcga aggcctcgcg ggcccgggcc tgaccggcca
     1621 cgcccagccg gcggcgcagc gccggatcgg cgaccagttc gccaagacgt ctggcgagct
     1681 cggcggtatc gaccgccacg gcggtgttgc tgcgcgacag gtactgctcg tagccgagcg
     1741 cgccggtctc gaagccgacg gccatcgcct cgccggcccc cggctgcggc gcccaggtgc
     1801 ggatgcggaa gccgtcgacg ccgtcgcgga cggtgtcctt gtagccgttc cagtcgctga
     1861 ccagagccgg caggcccgcg gccatggctt cgagcggggt gatgccgaaa gtctcctgga
     1921 tgctgtcggc cagcgagatg aagatgtccg ctccagccca ggccccgcga taggcggccg
     1981 cgtccttgcc gtcgacgaag accgtgcgca cgtcggggca gaaggcggtg agacccgagc
     2041 ggaacagccc gtccatgccc tcggaaaagg cctggccggc gattaccagg accaccggct
     2101 tgccggtctc ctgcgcggtc cgctgcaggg cgtggaacat ggcgtagggg tgggatttgc
     2161 cgctgaccga aagccggccg gcgaagaggg cggccacgtc gtcgggaccg agacccaggg
     2221 cggcgcgggc ctcgccgcgg tcggcctcgc tgaaggcgaa atcggcgcag tggacgccga
     2281 gcgggatcac cggcagcagc ggacgctggg ctagactggc ctggcccccg ccctggcggg
     2341 catgccagcg cagatagtcc gcctggcggt cgagcacgcc ggtcaccacg gccagggccg
     2401 cggtcgaggt gcagaccagg gcgtcccacg gcatcagggg ctcggtaagc atccggccga
     2461 tgacgtcggg cgtcgaggct gtggccaggg tgtgggtgac gccgcagagg ctgtaggcgg
     2521 caggtccctg gcgcagtcgg tggcgcgcgt tgggccaaag caccacatcc ggccgataga
     2581 gcacgccggc ctgggccagc aggtccagcc gagggccggg aatccaggtg gtcgcgacgc
     2641 gtgggtcgat gccggcgacg gtgcgctgga agacctcggc ggagtgacgg taggcggtgt
     2701 aggccgccag cggctggtcg cccgcggcct ggacggcggc gcgcagaaac ccgttccccg
     2761 cggactgccg gcccatcagc gacggcccgg tcagcaggta gccatcgggc tcgaacagga
     2821 gggcggcgtt cacctagtgt cccgatcctg aagttcgcaa gcgctcgcgg cgacaccgaa
     2881 cgaacttcag gatcgatgag gacactagca agcctttgtt tctagtgtgc ttctttggat
     2941 ttgaagttcg ctcggcgctt ggccttgaat gaggcgaacc cagcacactc gccgcgctta
     3001 gcacaagttc cgcgggcgtg tcagtggccg gcagcgccct ggccaggcgc caggtgcgag
     3061 acggtccagc gggtcaggac gtcgagaagc tgtggcgagg tctcgaagcc cggcaggtag
     3121 agccagcgcg tgctcacgcc gacggggtcg ggcagcaggg cgtggctgac gccagggatg
     3181 atccgcacgg tcacgtccgg gttgccgccc tcgcgcatgg ccgccgcaag ccgctcggcc
     3241 gagcggatcg gcacagtgat gtccgagccc ccctggagga tgagagccgg gcaacgaacg
     3301 agccgcgcga acccgagcgg atcgagcgcc aggaagctct gctcccgcgg cgtcagcgga
     3361 tcggccagct gcctggcgat ttccttgtcc cggtccgccg ccgcgacggt ggggtcgtgg
     3421 tcgacgatct gggcgatctg ctcgcgggcg agttgcgggc cgggcacgcc gggacccgcc
     3481 agggtgacga tggccgcgat cgccgggtcc ctggcggcga ccatcggggc gatcaggccg
     3541 ccttcgctgt agccgacgag ggcgatgcgc ttcgggtcga tccccggccg ggaccgcagc
     3601 caggcgacct cggtctgcac atcggcggct tcgtcgaggg tggtggatgg cgcgtgatcg
     3661 ccagtggact tgccgatgcc ccggtcgtcg acccgcagga ccgcgacgcc ggcgcgggtg
     3721 agggcgtcgg ccaggtcgcg caggggcatc cacgggggcg agccgccatt gcgctcgctg
     3781 gggccaaggc cggtgatcag aaccacggcg ggcgccctgc ccgcgcgccg gggcagggtc
     3841 agggtggccg cgaggcgatg gccctggggc gccgctatgc tcacttgcgc cgcgcgatag
     3901 gcgtggtcgg gcggggcggc ataggctggc cagggcagat agcggccggc ggcgaactcc
     3961 gcgcggcgct cgatcaccac gccatagtcg ggcagcgtcg cggccagcat gcagccgcgc
     4021 tcgtcggtca gcacctgata gcgcttgtcg cgataggtga ccgcccagtc ggtggcgtcg
     4081 atgcgctcga cgaggacatc gctgggggcg tcgcgataga acgacgtcgc cagcacgtgc
     4141 gatatggggc ggtccagcac gcgcgccctg gccacggcct gctcgacgga gctcaccacg
     4201 aagtcggacc agtagatggc gccgtcgccg aggtcgcggg ccctcggcgc ctggggcgcc
     4261 tcgcccgccg tggtcaggac tactgaggaa tgggccgccg tctggtcggg ccgcaggtcg
     4321 atcgtcgcgt cgatggtgag cgactgggtc aggatcgtgc ggctgtggat ccgcggtccg
     4381 agatgctcga cccaatcgac gccggcgagc ttgccctgtt ccacgatcag gaaggcggcg
     4441 ggcgcgcagg gcgctacggc ggctgtaagc ggcgacgcct cctgcgcggc cggaccggcg
     4501 gtttgggcgc ggggcgcggg cgagaggcca aggagaccgg cgctggcagt ggcggcggcg
     4561 aggaaggtgg aggctctcat ggcggtttcg ccttcctcgc agcgcgggcc gctttgccgc
     4621 ccgggtgcgc acggtggtcg agcggggtga gcaggatggt gatggcgtag agccggccgc
     4681 gccctggcgg cccggcggcg atctgggcga gttcggcgat ggagcggttg acgtcgccga
     4741 cctcgtcagg cgtcagccag ccgatcttgc gtagcgccag cagctcgcga tccgcgccgg
     4801 aaaccttcac atcgccgaac gcgaaggcat ggtcgaagtc gcggatgccc aggcgcagca
     4861 tggacgccac gatggcgctg atctcgccgc ggttgccgcc ttcccccaac tcgtagggaa
     4921 gccgcaggtc ggcggatacc gagcggatca gctcctcccg gtgcttgcct cggccccgat
     4981 ggccggcgct gaggaccagg cccgcctgcc gcagcacctt caggtgatag tagagggcgt
     5041 cagcatgcct cccgagggcc gacgccagtt ccgcgaccga gatcgctccg gcgttggcca
     5101 ggacatcgac gatctcctgc cgggccgagg aggccagcgc cgacagttgc ttcttggtcc
     5161 tgacgacata gggcggggcg gacggctcca tcgcgcgacg ataggtgtct gttgaaaatg
     5221 tcgcaataat ttaaacggaa gatcaggagc gcacccgttt gaagcgcagg gcgaggccga
     5281 cccgtcagtg gccggtgagg gtcacgccgc cgccgctggg cggcagggtg tcgccgccgt
     5341 tcagcgcttt ttgcatgtgg acgatgtcga cccagcggcc gtgcttgaaa ccgacgcttc
     5401 ggccgacgcc ggtctgctcg aaaccgagcg cgcggtgcag gccgatggag ccggcgttct
     5461 cggtgtcgcc gatcactgcc atcaactgcc ggatgcccag cgcctcgcag gcttcgatga
     5521 ccgcggagag cacggcgcgg ccgacgccct ggcccttggc gttcggcgac acatagacgc
     5581 tgtcttctag tgtgtagcgg taggcggcgc gcggcctaaa cggtccggcg taggcaaagc
     5641 ccaggacccg gccgtccagc tcggcgatca gatagggcag gccgcggtcc tgcacggcgc
     5701 ggcggcggcc atccatgtcg gcgggcgtcg gcggctcctc ctcgaaggtg ccgaagccat
     5761 tgagcacggc gtcgccgtag atcgccgcga gcgcctcggc gtcggcttca gtggcctcgc
     5821 ggacgatcat gctttctccc accccttttc cagcgcccag acggcgaagg catagtccaa
     5881 ggcgatctcc ttgaggaagt cgaaccggcc ggacgcgccg ccgtggccag cgtccatgtt
     5941 gatcttgagc agcatggggg cgtcaccggt cgaatattca cgcagcttgg cgatccactt
     6001 ctccggctcc cagtaggtga cgcgcgggtc ggagaggccg ccagtagcca ggaccggcgg
     6061 ataggcctgg gcggagacct ggtcataggg gctgtaggag gcgatcaggt cgtaggcggc
     6121 cgggtcttcc agcggattgc cccactcggg ccactccggc ggggtcagcg gcagggtggt
     6181 gtcgctcatg gtgttgagca catcgacaaa aggcacggcg gcgatgatcg cgccccagag
     6241 gtcgggccga aggttggcga cggcgcccat cagcatgccg ccggctgagc cgccgtaggc
     6301 cgcgatcctg cccttggtcg catagccctc atgggccagg tggtcggcgc aggcgatgaa
     6361 gtcggtgaag gtgttgggct tcttctcctt ccggccgtcg aggaaccagc cccagccctt
     6421 gtccgagccg ccgcggatgt gggcggtggc ccagatccag ccgcggtcga cgaggctcag
     6481 gttccggatc gagaagctgg gatccatggc gatgccatag gcgccgtagc cgtagagcag
     6541 caggggcgca gcgccatcga ggggcgtgtc cttcagcatc aggacggtga tcgggatgtc
     6601 ctggccgtcg ccagccttgg cgtagagcct gcgggcgaca tagcgggacg ggtcgtggcc
     6661 ggaagggatt tcctgggtct tgcggagcgt ccgcgcccgc gtcgccatgt cgtagtcgta
     6721 ggtctgcctg ggcgtggtcg gcgactggta gacgaagcgc gtcgtggcgg tgtcgtactc
     6781 gtagccgccc tccagattga gcgcataggc ctcctcgtcg aaggcgattt cgtgctccgc
     6841 gccggctcgg gcggtgacca cgaggcggtc gagcgcattg acccgctcgg cgcggaccag
     6901 gtggccggcg aaggccgcga aaccggtgat gtagcggccg ggctggtagg cgatccagtc
     6961 gcgccaggtc gccctggcgg ggacggcggc gtcgctgata gagagcttga agtccacggc
     7021 gccgtcggcg tttgtgcgga tcacccagcg gtcggtccag tgatcgaggc tgtatttcac
     7081 gccgacagag cgcggctcgg cgagcacggg ggcggcggtg ggatcggtcg ccgggatcag
     7141 ccagatctcg gtggtttcct ggttgccgac gtggatgacc acatggctgt cgtcggaggt
     7201 cgcgccgacg ccgaggaaca tgccctcgtc gacttcctcg tagaccagga cgtcctcgcc
     7261 tccccaatcc ttgtcggggc gcgccggcct gcggaagacc ttggagggcc gggcgttctc
     7321 gtcgcgccag atccagaaga tccaccggct gtccggcgag aaggcgaggt cgccgtaggc
     7381 gctctcgacc ggcgttccca gctcctcgcc ggtcgccaga tccttgatgc ggatcgtgta
     7441 gtactccgag ccctgctcgt cggcggccca ggcgtagagc gcgtggtcgg gactgtggct
     7501 ggcgg
//
LOCUS       DATAJL010000427         1755 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33491,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000427 DATAJL010000000
VERSION     DATAJL010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33491"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..531
                     /locus_tag="VHN39_08180"
     CDS             <1..531
                     /locus_tag="VHN39_08180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2816356.1"
                     /translation="VYANAGVSGGWTPMEEVDAAFWMEVLRINLIGPFLAIKHASAVM
                     RAAGKGSIVCTASVAGLRSGAGGIPYSASKAGVINLVQTSANVLYGTGVRVNAICPGL
                     IETGMTRPIYSAARERGTDDKIGQLNPLRRGGEPDEIAHAALFLASDDSSYVNGQAIV
                     VDGGLSSSHPVGSRRA"
     gene            528..>1755
                     /locus_tag="VHN39_08185"
     CDS             528..>1755
                     /locus_tag="VHN39_08185"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2816357.1"
                     /translation="MTDEAPPATISLGARLRQLAAEKPEAPAVTDEARTITWKQLDRR
                     TDRIARGLEAAGVKVGDLVTVGLPNSVDFIEACYGLWKVGATPQPISWRLPAAEADAV
                     MDLAQTPFLIAGPSILSERPRYDIPSLLALGGDDAPLEDRTAPVWKAPTSGGSTGRPK
                     LILSGGPGVYTPVDVGAYRTLADDVMIMPGPLYHNGPFTSAFGGLNQGAHLVILPRFD
                     AEKTLEAVDRHGGTWMYLVPTMMSRIWRLAPEVRAKYRVSTLRTVWHLAAPCPPWLKE
                     AWIDWLGADVIMELYAGTEAQAVTVITGAEWLEHRGSVGKVMVGEMCAFDAAGNTLPA
                     GEIGEIYMRRPADAPATYRYLGASARTLAGGWESLGDIGSFDADGYLYLADRRTDIIL
                     VGGSNVYPAEIEAAIDE"
BASE COUNT          272 a          613 c          594 g          276 t
ORIGIN      
        1 gtctacgcca acgccggggt gagcggcggc tggacgccca tggaagaggt cgacgccgcg
       61 ttctggatgg aggttctgcg gatcaacctc atcgggccgt tcctggccat caagcacgcc
      121 agcgcggtca tgcgcgccgc cggcaagggc tcgatcgtct gcacggcctc ggtggcgggg
      181 ctgcgttcgg gcgccggggg cattccctac agcgccagca aggccggggt gatcaatctc
      241 gtccagacca gcgccaatgt gctctacgga actggcgtca gggtcaacgc catctgcccg
      301 ggcctcatcg aaacgggcat gacccgcccc atctacagcg ccgcgcgcga gcggggcacc
      361 gacgacaaga tcggtcagct caaccccttg aggcgcggcg gcgagccgga cgaaatcgcc
      421 catgcggcgc tcttcctggc cagcgacgat tcctcctatg tgaacggcca ggcgatcgtg
      481 gtggacggcg gcctgtcgtc ctcgcacccg gtcggctcaa ggcgggcatg accgacgagg
      541 cgccgcctgc gaccatctcg ctgggcgcgc gcctccgcca gctcgcggcg gaaaagccgg
      601 aggccccggc tgtcaccgac gaggcgcgga ccatcacctg gaagcaactc gatcgtcgca
      661 ccgatcgcat cgcccgcggc ctggaagcgg ccggggtgaa ggtgggcgat ctggtcaccg
      721 tgggcctgcc caacagcgtc gacttcatcg aggcctgcta tggcctgtgg aaggttggcg
      781 cgacgcccca gccgatctcc tggcgcctcc ccgccgccga ggcggacgcc gtcatggacc
      841 tggcgcaaac accgttcctg atcgccggcc cctctatctt gagcgagcgc ccccgttatg
      901 acattccgtc cttgctggcg ctcggcggcg acgatgcgcc tctcgaagac cgcaccgcgc
      961 cggtctggaa ggcgcccacg tcgggaggct cgaccggccg gcccaagctg atcctttcag
     1021 gcgggcccgg cgtctacacg cccgtcgatg tcggggccta ccgcaccttg gccgatgacg
     1081 tcatgatcat gccggggccg ctctatcaca atggtccctt cacctccgcc ttcggcgggc
     1141 tgaaccaggg cgcgcatctg gtcatcctgc cgcgcttcga cgccgagaag accctggagg
     1201 ccgtcgatcg ccacggcggc acgtggatgt atctggttcc caccatgatg agccggatct
     1261 ggcggctcgc gcccgaggtc agggcgaaat accgcgtctc gacccttcgg accgtctggc
     1321 atctggccgc gccgtgccct ccgtggctca aggaggcctg gatcgattgg ctgggagccg
     1381 acgtgatcat ggagctctac gccggcacgg aggcgcaggc ggtcaccgtc atcaccgggg
     1441 ccgagtggct ggagcatcgc ggctcggtgg gcaaggtgat ggtgggcgag atgtgtgcct
     1501 ttgacgcggc cggaaacacc ctgccggccg gcgaaatcgg cgagatctac atgcgtcgtc
     1561 cggccgatgc gccggccacc taccgctacc tgggcgcgtc ggcgcgaacc ctggcgggcg
     1621 gctgggaatc gctgggcgat atcggctcct tcgacgccga cggctatctc tacctcgcgg
     1681 accggcgcac cgacataatc ctcgtaggcg gctctaacgt ctatccggcc gagatcgagg
     1741 cggccatcga cgaac
//
LOCUS       DATAJL010000428         1691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46220,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000428 DATAJL010000000
VERSION     DATAJL010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46220"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1691
                     /locus_tag="VHN39_08190"
     CDS             <1..>1691
                     /locus_tag="VHN39_08190"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX2816358.1"
                     /translation="LIGRTATDFVHPDDLDHFQANAAVLFGAAPAGGPIDREHRFRRG
                     DGSWVWLEGNPSLINGPDGKPMGLVNVFRDVSEKHAISEALREQTRRVTMAEEIAGVG
                     YWRFDAATRETSWSEQVFRHCGLAPDGLWTDADVAARIHPEDVAGAQERLNHAVDTGV
                     GWSGAVIRIVRPDGEVRYLGGRAVCETGAAGRVVAVFGTSIDITEQKLAQQNIEASER
                     RYRLLTEHATDIISQTASDGRMIYVSPSVERVTGFSVAEVLPRRMWEFVHPQDLKPFL
                     AFYSDLISGRTEGGRALRYRVKHKDGSWMWLESNPRLVKSAVPGEPDDIIDVLRDVTE
                     QQALSHQLREALALAEQAATVKSEFLANMSHEIRTPLTAVLGYTSLLADRHDLDPKAQ
                     EQVERVAAAGRGLLAIVNDVLDFSKLEAGQTTITPSPTAAGPLAREVLEMFVFQAKAK
                     ALTLRFEAATEIPEFVTLDPDRLRQILVNLVGNGLKFTDRGSVTVRLAYDPATERLGI
                     EVADTGPGISARAQAKLFQRFSQIDGSSTRSKGGTGLGLAIFQGLAEAMGGSILL"
BASE COUNT          283 a          557 c          594 g          257 t
ORIGIN      
        1 agctgatcgg gcgcacggcg acggacttcg tgcatcccga cgacctggac cacttccagg
       61 ccaacgccgc ggtcctgttc ggcgccgccc cggccggcgg tcccatcgac cgggagcatc
      121 ggttccggcg cggcgacgga agctgggtct ggctggaggg caacccaagc ctgatcaatg
      181 gcccggacgg caagcccatg ggactggtca atgtattccg cgatgtcagc gaaaagcacg
      241 cgatcagcga agctctgcgc gaacaaacgc gccgcgtgac catggcggag gagatcgccg
      301 gcgtcggcta ttggcgtttc gacgcggcca cccgggagac gtcctggtca gagcaggtat
      361 tccggcattg cggattggcg ccagacggcc tgtggaccga cgccgatgtg gcggcgcgca
      421 tccacccgga ggacgtggcc ggcgcccagg aacgcctgaa ccacgccgtc gacaccgggg
      481 tcggctggtc cggcgccgtc atccgcatcg ttcggcccga cggcgaggtc cgctacctcg
      541 gcgggcgggc ggtctgcgag accggcgccg ccggccgggt cgtcgcggtg ttcggcacgt
      601 cgatcgacat caccgaacaa aagctggccc agcagaatat cgaagccagc gagcggcgct
      661 accggctgct gaccgagcac gccacggaca taatctcgca gaccgccagc gacgggcgga
      721 tgatctatgt gtcgccttcg gtggaacgcg ttacgggctt cagcgtcgcc gaggtcttgc
      781 cccgacggat gtgggagttc gtccatccgc aagacctgaa gccgtttctt gccttctaca
      841 gcgatctgat cagcgggcgc accgaaggcg ggcgcgcgct ccgctatcgc gtgaaacaca
      901 aggacggctc gtggatgtgg ctggagagca atccgcggct ggtcaagtcc gcggttccgg
      961 gcgagcccga cgacatcatc gatgtgttgc gcgatgtcac ggagcagcag gccttgagcc
     1021 accagcttcg cgaagccctg gcgctggccg agcaggcggc gacggtgaag tcggaattcc
     1081 tggccaacat gagccacgag atccgcaccc cgctgacggc ggtgctgggc tacacgagcc
     1141 tgctggcgga tcgccacgac ctcgatccga aagcgcagga gcaagtcgag cgggtcgccg
     1201 cggccggccg cggcctgctg gcgatcgtca acgatgtgct ggacttctcc aagctggagg
     1261 ccggccagac gacgatcacg cccagtccga ccgcggccgg gccgctggcg cgcgaagtgc
     1321 tggagatgtt cgtcttccag gccaaggcca aggcgctcac cctgcggttc gaagccgcca
     1381 ccgaaatccc cgagttcgtg acgctcgacc cggatcgcct gcggcagatt ctggtcaacc
     1441 tggtgggcaa cgggctgaag ttcaccgacc gtggctcggt caccgtgcgc ctcgcttatg
     1501 acccggcgac cgagcggctc ggcatcgagg tggccgacac ggggcctggc atttcggcgc
     1561 gggcgcaggc caagctgttc cagcgcttct cgcagatcga cgggtcgtcg acgcggtcca
     1621 agggcgggac cggcctgggc ctggccatct tccagggcct ggccgaggcg atgggggggt
     1681 cgattttgct g
//
LOCUS       DATAJL010000429         1949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_7536,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000429 DATAJL010000000
VERSION     DATAJL010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7536"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..311)
                     /locus_tag="VHN39_08195"
     CDS             complement(<1..311)
                     /locus_tag="VHN39_08195"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase"
                     /protein_id="HEX2816359.1"
                     /translation="MSTPQLSQPTLSGSGFNLTPPTAEERKALEAALTREEAEVLLHH
                     GTEAPFCGGLLDQKDAGVYCCRLCGLPLFEHKTKFESGTGWPSFWAPVDEAHVTAIKD
                     VS"
     gene            369..>1949
                     /locus_tag="VHN39_08200"
     CDS             369..>1949
                     /locus_tag="VHN39_08200"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEX2816360.1"
                     /translation="MFSKILIANRGEIAVRIIKTCRRMGIATVVVYSEADADSLAVEM
                     ADESVFIGPPPAAQSYLLADKIIAAARETGAEAIHPGFGFLSENAGFAKRCAAEGIVF
                     IGPNPHAIEAMGDKIESKKFATRAGVSVVPGHIGEIDDTAHAIKISEGIGYPVMIKAS
                     AGGGGKGIRVAWNRKDVEEGFPAVKAEAKASFGDDRIFIEKFIESPRHIEIQVLGDKH
                     GHVVHLFERECSIQRRNQKVIEEAPSPLLDAKTRAAMGAQAVALAQAVQYDSAGTVEF
                     VAGQDKSFFFLEMNTRLQVEHPVTELITGLDLVEQMIRSAYGEKLAFAQKDLKIDGWA
                     MESRIYAEDPYRGFLPSIGRLVRYDPPAEGDVPLEGKNIGKVRNDAGVREGDEISMFY
                     DPMISKLSTWARTRDGAIDLMGRALEDFHIEGLGQNIPFLAAVMDQPRFRSGKLSTNY
                     IKDEFPDGFQGLPPTPAQRDLIAAVALSMHRTLLARAAPDQLRQDWIVVVGHDKREVR
                     VTGNGGGLMIESEGRKLHL"
BASE COUNT          352 a          644 c          651 g          302 t
ORIGIN      
        1 gagacgtcct tgatggctgt cacatgcgcc tcgtccaccg gggcccagaa ggacggccag
       61 ccggtgccgc tctcgaactt ggtcttgtgc tcgaagagcg gcaggccgca gagccggcag
      121 caatagacgc cggcgtcctt ctgatcgagc aggccgccgc agaagggcgc ctcggtgccg
      181 tgatgcagca ggacctcggc ctcctcgcgg gtcagcgcgg cctccagggc cttgcgttcc
      241 tctgcggtgg gcggggtcag gttaaaaccg gacccagaaa gcgtaggttg ggagagttgt
      301 ggcgtgctca tgtgggtcaa tctaaggtcc cggccttcgg ttcggaagtg aggcgcgtgc
      361 tctcctagat gttttccaag atcctgatcg ccaaccgcgg ggaaatcgcg gtccgaatca
      421 tcaagacctg ccgccggatg gggatcgcca ccgtggtggt ctattccgag gccgacgccg
      481 acagtctggc cgtcgagatg gccgacgaga gcgtgttcat cgggccgccg ccagcggccc
      541 agtcttatct cctggccgac aagatcatcg cggccgcccg cgaaacgggc gccgaggcga
      601 tccacccggg cttcggcttc ctgtcggaaa acgccggctt cgccaagcgc tgcgccgcgg
      661 aggggatcgt cttcatcggc cccaacccgc acgccatcga ggccatgggc gacaagatcg
      721 agtcgaagaa gttcgccacc agggccggcg tctcggtggt gccgggccac atcggcgaga
      781 tcgacgacac agcccacgcc atcaagatct ccgagggcat cggctatccg gtgatgatca
      841 aggcttcggc gggcggcggc ggcaagggca tccgggtcgc ctggaaccgc aaggacgtcg
      901 aggaggggtt cccggcggtg aaggccgagg ccaaggccag cttcggcgac gaccgcatct
      961 tcatcgagaa gttcatcgaa agtccgcgcc acatcgagat ccaggtgctg ggcgacaagc
     1021 acggccacgt cgtccacctg ttcgagcgcg aatgctcgat ccagcggcga aaccagaagg
     1081 tcatcgagga ggcgccgagc ccgctgctgg acgccaagac ccgcgcggcc atgggcgcgc
     1141 aggccgtcgc cctggcgcag gccgtccagt acgacagcgc cggcaccgtc gagttcgtgg
     1201 ccggccagga caagagcttc ttcttcctgg agatgaacac ccgcctgcag gtggagcatc
     1261 cggtcaccga actgatcacc ggcctggacc tggtcgaaca gatgatccgc tcagcctatg
     1321 gcgagaagct cgccttcgcc cagaaggacc tgaagatcga cggctgggcc atggagagcc
     1381 gcatctacgc cgaggacccc taccgcggct tcctgccctc catcggccgg ctcgtgcgct
     1441 acgacccgcc ggcggaaggc gatgtcccgc tcgagggcaa gaatatcggc aaggtgcgta
     1501 atgacgccgg ggtgcgcgaa ggcgacgaga tctcgatgtt ctacgacccg atgatctcca
     1561 agctctccac ctgggccagg acccgcgacg gcgccatcga cctcatgggc cgggcgctgg
     1621 aggacttcca catcgagggc ttgggccaga atatcccgtt cctggccgcg gtgatggacc
     1681 agccccggtt tcgttcgggc aagctctcca ccaactacat caaggacgag ttccccgacg
     1741 gcttccaggg tctgccgccc acgcctgcgc agcgcgacct gatcgccgcc gtcgcgctct
     1801 ccatgcaccg caccctgctg gcccgcgccg cgccggatca actgcgccag gactggatcg
     1861 tcgtggtcgg acatgacaag cgcgaggtga gggtcacggg caatggcggc ggtctgatga
     1921 tcgagagcga gggccgaaag ctgcacctg
//
LOCUS       DATAJL010000430         3836 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46254,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000430 DATAJL010000000
VERSION     DATAJL010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3836
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46254"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VHN39_08205"
     CDS             <1..234
                     /locus_tag="VHN39_08205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816361.1"
                     /translation="ADIARFGIEAWAPTRHFVATLKDGSQVVGSAETVQHYEVPIYGR
                     RWYGRIVRAEVGSHRMVGLINDWKPDEQPYGLS"
     gene            246..1301
                     /locus_tag="VHN39_08210"
     CDS             246..1301
                     /locus_tag="VHN39_08210"
                     /inference="COORDINATES: protein motif:HMM:NF015368.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816362.1"
                     /translation="MDIHALARRDLLMAGLTLPLAGLAARAQAQTPAGAPGPEAGPFE
                     IASVDRMDLVDPDRGRTIVTRAYFPAKPGRYPVIIFSHGFGGSSVIFPNTGKVWASHG
                     YVVLHPTHSDSLAMMDANVPSADAAVMRKFRAMRGAVDRETQMAFVKVLDDPFFLTSR
                     LHDVGFLLNALKTPKAGLDAQVLARADTSKIGMSGHSFGGYTTIVLAGSTLAPPPGAP
                     VPTGFAGFLCMSGQGAGRMSLNTDSFRTIVKPFMATTGTRDFGAANETPPWRLQPWEL
                     SPPGRKYAVVVEGFRHADFDPTPGDPEVGARSAELRKLQLQFWDSVLKSDRGAQNTLA
                     KEAQVSKSTDPVWLRQR"
     gene            complement(1318..1683)
                     /locus_tag="VHN39_08215"
     CDS             complement(1318..1683)
                     /locus_tag="VHN39_08215"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2816363.1"
                     /translation="MAAESRNPRHGALDAKLGERIRHRRRELGLSQSALGGKLGITFQ
                     QIQKYENGTNRVSATMLLKLSDALAMPVTELLQQADPAAPPVDTKSQAAELQASFAKI
                     QSADLRAAVLILVAGLALR"
     gene            1822..2349
                     /locus_tag="VHN39_08220"
     CDS             1822..2349
                     /locus_tag="VHN39_08220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816364.1"
                     /translation="MPRNRGDRVRGWTPGDKPMIELPRHGLALAAAAVIAAAGPARAA
                     ELCGWLVETTDADSVHEFSLWLEADSDVSFFYKMTGKGIVSEGMKAYSPGSGTFSLRP
                     KHAEKAWGFGTSFSPPGDIDIVAEIHAPPKSVFSDDETPLMAKFTFQRHVPEDEKVPP
                     TDFARRQCATIAAGR"
     gene            2362..3672
                     /locus_tag="VHN39_08225"
     CDS             2362..3672
                     /locus_tag="VHN39_08225"
                     /EC_number="3.4.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF015536.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016805 - dipeptidase activity [Evidence
                     IEA];
                     GO_function: GO:0070004 - cysteine-type exopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C69 family dipeptidase"
                     /protein_id="HEX2816365.1"
                     /translation="MCDTLVALAASTARGSVLFAKNSDRERNEAQGLEMSPRRHGGEP
                     LRLTYITIPDAYATHACLLSRPCWMWGAEIGANEHGVAIGNEALHAKTPAQRQRALTG
                     MDLVRLGLERAATAAEAVSVITSLLERYGQGGDCGHLGRSYYDNGFIIADPHEAFVLE
                     TQGRWWAVERVKRHRALSNAYSIGRGYDAVSADLAHHARVQRWVGLTGRFDVAKELLD
                     EARDAVSFGRGRCARGNALLDLWAPKLTPQTMMAILRDHGEAPDWSPANTQGRTICMH
                     AAQGPRRSQSVASMVSELRPEGSVHWVTGTSAPCISLFKPVLFEAGWPPVGPAPNDWF
                     DRDSLWWRHERLHRALLHDFTAGLAAIEGERDIIEAGFVAHIDAAFDGGPEALHRAVA
                     ECWGEAAAAETRWLDALEPPGRTPNSAYRRSWARLNQVAGLPRT"
     gene            3704..>3836
                     /locus_tag="VHN39_08230"
     CDS             3704..>3836
                     /locus_tag="VHN39_08230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006275466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816366.1"
                     /translation="MNDISDRLNRPDLDAYWMPFTPNRQFKTDPRLLVAAKGMYYRTE
                     "
BASE COUNT          610 a         1319 c         1321 g          586 t
ORIGIN      
        1 gccgacatcg ccaggttcgg gatcgaggcc tgggcgccga cgcggcattt cgtggccacc
       61 ctgaaggacg gcagccaagt cgtggggtcg gccgagaccg tccagcacta tgaggtgccg
      121 atctacggcc ggcgctggta cggccgcatc gtccgggccg aggtcggcag ccaccggatg
      181 gtcggcctga tcaacgactg gaaacccgac gaacaaccct acggcctgag ttgaggacca
      241 cgcccatgga catccacgcc ctcgcccgcc gtgacctgct catggccggt ctgacgttgc
      301 cgctcgcagg cctcgccgcc cgcgcccaag cccaaacccc ggccggtgcg cccgggcctg
      361 aggccggacc gttcgagatc gccagcgtcg accgcatgga cctggtcgac ccggaccgcg
      421 ggcggaccat cgtcacccgc gcctactttc ccgccaagcc cggccgctat ccggtgatca
      481 tcttcagcca cggcttcggc ggctcgtcag tgatcttccc caacaccggc aaggtctggg
      541 cgagccacgg ctatgtggtg ctgcacccga cccactcgga ctcgctggcg atgatggacg
      601 ccaacgtgcc ttcggccgac gcggcggtga tgcgcaagtt ccgcgcgatg cgcggggcgg
      661 tggaccgcga gacccagatg gccttcgtga aggtgctgga cgaccccttt tttctgacca
      721 gccgcctgca tgatgtgggc ttcctgctga acgcgctgaa aacccccaag gccggcctgg
      781 acgcccaggt cctggcgcgc gccgacacct cgaagatcgg catgagcggc cattccttcg
      841 gcggctacac aaccattgtg ctggcaggct cgacgctcgc tccgccgccg ggcgcgccgg
      901 tccctaccgg gttcgcgggc ttcctgtgca tgagcggcca gggcgccgga cggatgtcgc
      961 tgaacaccga cagcttcagg accatcgtca aaccgttcat ggccaccacc ggcacccgtg
     1021 acttcggcgc ggcgaacgag accccgccct ggcggctcca gccctgggag ctcagcccgc
     1081 ccggccgcaa atatgccgtg gttgtcgagg gcttccgaca tgcggacttc gatccgacgc
     1141 ccggcgatcc ggaggtcggc gcgcgcagtg cggagttgcg caagctgcag ctgcagttct
     1201 gggacagtgt cctgaaatcc gatcgcggcg cccagaacac cctggcgaag gaagctcagg
     1261 tctcgaagtc caccgaccct gtctggctgc gccagcgctg aagcgcggcc gggccgctca
     1321 gcgcagcgcg aggcccgcga ccaggatcag gaccgccgcg cgcaggtccg ccgactggat
     1381 cttggcgaag gacgcctgca actcggcggc ctggctcttg gtgtcgacgg gcggtgcggc
     1441 cggatcagcc tgctgaagca gctcggtcac cggcatggcg agcgcatcgg acagcttgag
     1501 cagcatggtc gccgagacgc ggttcgtgcc attttcgtac ttctggatct gctggaaggt
     1561 gatgccgagc ttgccgccca gggctgactg cgagagcccc agctcgcggc ggcggtggcg
     1621 gattcgctcg ccgagcttgg cgtcgagcgc gccgtggcgg gggttgcggg attcagcggc
     1681 catcgaaact cctggcaggc ggcatgtcag agcttcgagt cgattcgccg aacggtggaa
     1741 tgctcatgaa tcggctatac cgaaggggtg cgggcttcac tacggcgcgg tggttgcggt
     1801 ccgcacgacc cgggcgcaac catgccgcgc aaccggggtg atcgcgttcg ggggtggacg
     1861 ccgggagaca agccgatgat cgagctgcca cgtcatggtc ttgcgctcgc cgccgccgcc
     1921 gtgatcgccg cggccgggcc cgcgcgcgct gctgagcttt gcgggtggct cgtcgagacc
     1981 actgatgccg acagcgtgca tgagttctcg ctgtggcttg aggccgacag cgatgtgagc
     2041 ttcttctaca agatgaccgg caagggcatc gtcagcgagg gaatgaaggc ctattcgccg
     2101 ggcagcggga ccttttcgct gcgcccgaag catgccgaaa aggcctgggg ttttggcacg
     2161 agtttcagtc cgcccggcga tatcgacatc gtcgccgaga tccacgcgcc gcccaagagc
     2221 gtcttctccg acgacgagac gccgctgatg gccaagttca ccttccagcg ccacgtgccg
     2281 gaggacgaga aagtcccgcc caccgacttt gccaggcgcc agtgcgccac gattgccgcc
     2341 ggacgatgag gccacagctc catgtgtgac acccttgtgg ccctggcggc ctcgacagca
     2401 cgggggtctg tgctcttcgc caagaacagc gaccgggagc gcaacgaagc gcaaggcctg
     2461 gagatgtcgc cacggcgaca cggcggcgag ccgctcaggc tcacctacat caccatccct
     2521 gacgcctatg cgacccacgc ctgcctgctg agccggccgt gctggatgtg gggcgcggag
     2581 atcggggcca atgagcatgg ggtggcgatc ggcaatgagg cgttgcatgc caagacgccg
     2641 gctcagcgcc agcgggcgct gaccggcatg gacctggttc ggctggggct ggagcgcgcc
     2701 gcgacagccg ccgaggcggt ctcggtgatc accagcctgc tggagcggta cggccagggc
     2761 ggcgactgcg gccacctggg acggtcctac tacgacaacg gcttcatcat cgccgaccct
     2821 cacgaggcct ttgtgctgga gacccagggc cgttggtggg cggtcgagcg ggtcaagcgc
     2881 cacagggcgc tgtcgaacgc ctactccatc ggccggggct acgacgcggt gagcgccgac
     2941 ctggcccatc acgcccgcgt gcagcgctgg gtcggcctca ccggccgctt tgacgtggcc
     3001 aaggagttgc tggacgaggc gcgcgatgcg gtgagtttcg gccgtggccg ctgcgcgcgc
     3061 ggcaacgcgc tgctcgacct ctgggcgccg aagctgacgc cccagacgat gatggcgatc
     3121 ctgcgcgacc acggcgaggc gccggactgg agcccggcca atacccaggg ccgcacgatc
     3181 tgcatgcatg ccgcgcaagg accgcgccgc agccagtcgg tggcctcgat ggtcagcgaa
     3241 cttcggccgg agggctcggt ccattgggtg acggggacct cggcgccctg catcagcctt
     3301 ttcaagcccg tgctgttcga ggcgggctgg cctccggtgg ggcccgcccc caacgactgg
     3361 ttcgaccgcg acagcctctg gtggcgtcat gagcgcctgc accgggcgct gctgcatgat
     3421 ttcacggcgg gcctcgccgc gatcgaaggc gaacgcgaca tcatcgaagc aggcttcgtc
     3481 gcccacatcg acgccgcgtt cgacggcggg cccgaggcgc tccatcgggc ggtcgccgag
     3541 tgctggggcg aggccgcggc cgccgaaacg cgctggctgg acgccctgga gccccccggt
     3601 cggaccccaa acagcgccta ccgccgcagc tgggcgcggc tcaatcaggt ggcgggcctg
     3661 ccgcgaacct gatttcgtag ggactgaccc tgcgaggcgc gccatgaacg acatctccga
     3721 tcgactgaac cggccggacc tcgacgccta ctggatgccg ttcacgccca accggcagtt
     3781 caagacggac ccgcgcctgc tggttgccgc caagggcatg tactaccgca ccgagg
//
LOCUS       DATAJL010000431         2549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_67473,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000431 DATAJL010000000
VERSION     DATAJL010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2549
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67473"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /gene="sufD"
                     /locus_tag="VHN39_08235"
     CDS             <1..901
                     /gene="sufD"
                     /locus_tag="VHN39_08235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEX2816367.1"
                     /translation="TAGVGDGPFEALATDRRLIVNGRGAEPIAVARDASAVVAVRFVS
                     RDAGAHIARLSITLGANARLLLLESYESDGGSLSEAALTVTLGAGATVERVVLAQDHA
                     EAVTVSQAEVTLAARSAFGQTIVASGARRQRLETRVLHPGGEASLRLDGVYLLADKRH
                     SDQTTVVTHAGTDGVTAQLTKGVVRDQARGVFQGRIVVEEGADRTDARMGHHALILSD
                     RAEVDAKPELEIYADDVACAHGNTVGALDEDALFYARQRGMSEADARALLTEAFIGEV
                     VDRIVHEGARDVVRAWVAEGLRA"
     gene            904..2118
                     /locus_tag="VHN39_08240"
     CDS             904..2118
                     /locus_tag="VHN39_08240"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX2816368.1"
                     /translation="MAFDAEAIGAEFPILGRQVNGKPLIYLDSAASAQKPRAVIDAMV
                     HAMERSYANVHRGLHTLANETTEAYEGARKKVAAFIGAEPAEIVFTKGGTEAINLVAS
                     GLGASLKTGDEILLSEMEHHANIVPWHFLRERLGVVLTFSPVIDDGRLDVEAFKSLLT
                     ERTRVVALTHMSNVLGTVNPVAELTRLAHEAGALVLLDGCQAAVHQPVDVKALDVDFY
                     VFSGHKLYGPTGIGALYGKAERLAALPPYQGGGEMIGSVSLEAITYADPPHRFEAGTP
                     PILEAIGLGAAIDWLSGLDRAAVAEHEHALYDHVRQRLNGANWLRVLGEAPGKGAILS
                     FTVDGAHAHDVAQILDKYGVAVRAGTHCAEPLMRRFGVTSSARASFALYNTHEEADAF
                     VDALTKTQAFFA"
     gene            2149..2523
                     /locus_tag="VHN39_08245"
     CDS             2149..2523
                     /locus_tag="VHN39_08245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system Fe-S cluster assembly protein"
                     /protein_id="HEX2816369.1"
                     /translation="MDDAAPVETQTQATSGTPLSQGELDVLTDKLIEQLKTVFDPEIP
                     VDIYELGLIYKVDVSDDKDVVIDMTLTAPGCPVAGEMPGWVEDAIRVIPEVKSCKVEL
                     VFEPPWDPSRMSDEAKLQLNMF"
BASE COUNT          409 a          894 c          852 g          394 t
ORIGIN      
        1 cacggcgggc gtcggcgacg gacccttcga agcgctggcc accgaccgcc ggctgatcgt
       61 caacggccga ggcgccgaac ctatcgcagt cgcccgcgac gcttcggcgg ttgtcgccgt
      121 gcgcttcgtg tcgcgcgacg cgggcgccca cattgcccgc ctgagcatca ccctgggcgc
      181 caatgcccgg ttgctgctgc tggagagcta tgagagcgac ggcggatcgt tgtcggaggc
      241 cgcgctgacc gtcaccctgg gcgctggcgc gacggttgaa cgtgtggtgc tcgcccagga
      301 tcacgccgag gcggtcacgg tcagccaggc ggaggtgacg ctcgcggccc gctctgcgtt
      361 cggccagacg atcgtcgctt ccggcgcgcg ccggcaacgg ctggagaccc gggtcctgca
      421 ccctgggggc gaggccagtc tgcgcctcga cggggtctat ctgctggccg acaagcgcca
      481 ttccgaccag acgaccgtcg tcacccacgc cgggaccgac ggcgtcaccg cccagctcac
      541 caagggcgtc gtgcgcgatc aggcgcgcgg cgtcttccag ggccggatcg tggtggagga
      601 gggcgcggac cgcaccgacg cccgcatggg ccaccacgcg ttgatcctgt cggaccgcgc
      661 ggaagtggat gccaagcccg agcttgagat ctacgccgac gacgtggcct gcgcgcatgg
      721 caatacggtg ggcgcgctcg acgaggacgc cctattctac gcccgtcagc gcggcatgtc
      781 cgaggccgac gcccgcgccc tgctgaccga ggccttcatc ggagaggtcg tcgaccgaat
      841 cgtccatgag ggcgcccgcg atgtggtccg cgcctgggtt gcggaagggc tgagggcctg
      901 accatggcct tcgacgccga agccatcggc gccgagttcc cgatcttggg gcgccaggtg
      961 aacggcaagc cgctgatcta tctggactca gccgcctcgg cgcagaagcc gcgcgccgtc
     1021 atcgacgcca tggttcacgc gatggagcgc agctacgcca acgtgcaccg tgggctccac
     1081 actctcgcca acgagaccac cgaggcctac gagggcgccc gcaaaaaggt cgcggccttc
     1141 atcggcgccg aaccggccga gatcgtcttc accaagggcg gcaccgaggc gatcaatctg
     1201 gtggcctccg gccttggcgc gagcctcaag accggcgatg agatcctgct ctcggagatg
     1261 gagcatcacg ccaacatcgt gccctggcac ttcctgcgcg agcgcctggg cgtggtcctg
     1321 acgttctccc cggtcatcga cgacggccgc ctggacgtcg aggctttcaa gagcctgctc
     1381 accgagcgca ccagggtcgt ggccttgacc cacatgtcca atgtgctggg caccgtgaac
     1441 ccggtggcgg agctgacccg gctggcgcac gaggccggcg cgctggttct gctcgacggc
     1501 tgccaggccg ccgtgcacca gccggtggac gtgaaagcgc tggacgtcga tttctacgtc
     1561 ttctccggcc acaagctcta tggccccacc ggcatcggcg ccctctacgg caaggccgag
     1621 cgcctggcgg cgctcccgcc ctaccagggc ggcggcgaga tgatcggctc tgtgagcctg
     1681 gaggccatta cctacgccga ccccccgcat cgcttcgagg ccggcacgcc gccgatcctg
     1741 gaggccatcg gcctgggcgc ggccattgac tggctgtccg gcctcgaccg cgccgcggtg
     1801 gccgagcacg agcacgccct ctacgaccat gtccgccagc ggctgaacgg cgcgaactgg
     1861 ctccgcgtgc tgggcgaggc gccgggcaag ggcgcgattc tttccttcac ggtcgatggg
     1921 gcgcacgcgc acgacgtcgc tcaaattctg gacaagtacg gggtggcggt gcgcgccggg
     1981 acccattgcg ccgagccgct gatgcggcgc ttcggggtga cgtcgagcgc gcgcgcgtcc
     2041 ttcgccctat ataacaccca cgaggaggcc gacgccttcg tggacgcgct taccaagacc
     2101 caagccttct tcgcgtaaac atggcctttt tcgcttaaga tgaccccgat ggatgacgcc
     2161 gcacccgttg agacccagac ccaagcgact tcggggaccc cgctgtcgca gggggaactc
     2221 gacgtcctga ccgacaagct gatcgagcag ctcaagaccg tgttcgaccc ggagattccg
     2281 gtggacatct acgagctcgg cctcatctac aaggtcgacg tctccgacga taaggacgtg
     2341 gtcatcgaca tgacgctcac cgccccgggc tgtccggtgg ccggcgagat gcccggctgg
     2401 gtcgaagacg cgatccgcgt catccccgag gtcaagtcct gcaaggtcga actggtcttc
     2461 gagccgcctt gggacccgtc gcggatgtcc gacgaggcca agctgcaact gaacatgttc
     2521 tgatggacct caacgtcaca acccagccc
//
LOCUS       DATAJL010000432         2809 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_81983,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000432 DATAJL010000000
VERSION     DATAJL010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81983"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..1705)
                     /locus_tag="VHN39_08250"
     CDS             complement(113..1705)
                     /locus_tag="VHN39_08250"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HEX2816370.1"
                     /translation="MTSKKTGYLLGAIAGAGVMAAAVAGAGMKLPAAHADGVGHLIRA
                     STAPIFAPPPGAPMSFADIFDRVSPAVVSINVTSRPDASALRKIPGFENFPFDLQPRG
                     GQGGGGDGDEEGGPPQGGRTDKGQPKLPTQQSAGSGFFISADGYIVTNNHVVENAESI
                     KVVLKDETELDATVVGRDEGSDLAVIKVKGGRTNFPFVNFENAGKPRVGDWVIAVGNP
                     FGLGGTATAGIISAYGRDIGETFVDYIQIDAPINRGNSGGPTFDIYGRVIGVNTAIFS
                     PSGGSVGIGFAIPAEVADNVTKQLIAGGKIQRGYIGATIQNFTPDLAEAQGLGAQKGA
                     IVSDLVPAGPSARAGLQPGDVIVSINGVAVKTSTELTREVAKGRAGDVLKLDVIREGK
                     HRVVEVRSGIRPSEKDLASNDNTQGGGGTTAPATPPVTHPSVLGMALGPLDEAMRRRL
                     NAPPEVHGVVVESVDQTSDAGQKGLHRGDVIVQAGGRPVATAADVAAAVDSAKKANRA
                     GVALGIFRQGRTTFLALKMAAG"
     gene            complement(1852..2316)
                     /locus_tag="VHN39_08255"
     CDS             complement(1852..2316)
                     /locus_tag="VHN39_08255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein"
                     /protein_id="HEX2816371.1"
                     /translation="MRPKVSLRALAAMFAGVLCLAAAADPADRLADPAQEARARAIFA
                     DVRCLVCQNESIDDSEAELAADLRHVVREQVKAGRSDAQIKRFLTDRYGEFVLMTPAF
                     SWVNLALWGGPFAVVVLGAGLLASRLRNRSGEAELSPEEARRVRALSQTDAT"
     gene            complement(2313..>2809)
                     /locus_tag="VHN39_08260"
     CDS             complement(2313..>2809)
                     /locus_tag="VHN39_08260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cytochrome c-type biogenesis CcmF C-terminal
                     domain-containing protein"
                     /protein_id="HEX2816372.1"
                     /translation="GLGVFVLGACFELGWKAEAAEALPIGGAVDVAGYHLVLEDVGPV
                     DGPNYDSERAILRVTRDGKPVCVAEPNRRFYPAGGQTVSGIAICYRGASHLYMVLGEK
                     RVATPNSQGTGGAPVWLIRAYWNPWATLIFLGPVLMALGGLTSLSDRKMRLGVARRRR
                     EQPA"
BASE COUNT          422 a          974 c          973 g          440 t
ORIGIN      
        1 ggcgcaggtg ttgccggctt cggtaagccc acgctccatc gcatcggccg cttcgaggtc
       61 gtcttcgacg atcaggatcc gcatgtcagt tcttcgcccc cgcgagagtt ggctagccgg
      121 ccgccatctt caacgccagg aaggtggtgc gaccctggcg gaagatgccc agggccacgc
      181 cggcgcggtt ggccttcttg gcgctgtcaa ccgcggcggc gacgtcggcg gcggtggcca
      241 ccggacgccc gcccgcctgc acgatcacgt caccgcggtg caggcccttc tggccagcgt
      301 ctgaggtctg gtcgacgctc tcgaccacca cgccgtgcac ctcgggcggc gcgttcagcc
      361 gccggcgcat ggcctcgtcg agcgggccca gcgccatgcc gagcacggac gggtgcgtca
      421 ccggcggtgt ggccggcgcg gtggttccgc caccgccctg cgtattgtcg ttggaggcca
      481 ggtccttttc cgaaggccgg atgccggagc gaacctcgac gacgcggtgc ttgccttcgc
      541 ggatcacgtc gagcttgagg acgtcgccgg cgcggccctt ggcgacttcg cgggtgagtt
      601 cggtggaggt cttcaccgcc acgccgttga tcgacacgat cacgtcaccg ggctggaggc
      661 cggcgcgcgc cgaggggccg gcgggcacca ggtcggagac gatcgcgccc ttctgcgcgc
      721 ccaacccctg agcctcggcg aggtccggcg tgaagttctg gatggtggcg ccgatgtagc
      781 cgcgctggat cttgccgccg gcgatcagct gcttggtgac gttgtcggcc acctcggcgg
      841 gaatggcgaa gccgatgccc accgagccgc cggagggcga gaagatcgcg gtgttcaccc
      901 cgatgacccg gccatagatg tcgaaggtcg ggccgccgga gttgccgcgg ttgatggggg
      961 cgtcgatctg gatgtagtcg acgaaagtct cgccgatgtc gcggccgtag gccgaaatga
     1021 tcccggccgt ggcggtgccg cccaagccga agggattgcc gaccgcgatc acccagtcgc
     1081 cgacgcgcgg cttgccggcg ttctcgaagt tcacgaacgg gaagttggtc cgtccgccct
     1141 tgaccttgat caccgccagg tccgagccct cgtcgcgtcc gaccaccgtg gcgtcgagtt
     1201 cggtctcgtc cttcaggacg accttgatgc tctcggcgtt ctcgacaacg tgattgttgg
     1261 tgacgatgta accatcggcc gagatgaaga agcccgagcc cgcggactgc tgggtcggga
     1321 gcttcggttg gcccttgtcg gtgcgtccgc cctgcggcgg gccgccctct tcgtcaccgt
     1381 cgccgccacc gccctggccg ccgcgcggct gcaggtcgaa ggggaagttc tcgaagcccg
     1441 ggatcttgcg cagcgcgctg gcgtccggcc ggctggtcac attgatcgac accaccgcgg
     1501 gcgagacgcg gtcgaagatg tcggcgaagg acatgggcgc gcctggcggc ggcgcgaaga
     1561 tcggcgccgt ggaggccctg atcagatgcc cgacgccatc ggcgtgggcg gcgggcagct
     1621 tcatgcccgc acccgccacc gcggcggcca tgacgccggc gccggcgatg gcgcccagga
     1681 gatagccggt cttcttggag gtcatatgac ttctgtttcc ctgcgcgcgc cgcacgatga
     1741 tccggcgcgc atcgtaaacc taggttcgat gcacgagagc gcaactgctc tcaagttacg
     1801 tttcggacag ccttaagccc ggcattcaga cggttgtagg gcgcaatcat gtcaggtggc
     1861 gtcggtttgc gacagcgctc tcacacgccg ggcctcctca ggtgagagtt ccgcttcgcc
     1921 cgatcggttc cgaagcctgc tggcgagcag gcctgcccca agaacgacca ccgcgaacgg
     1981 cccgccccac agcgcgaggt tcacccacga aaacgccggg gtcatcagca cgaactcgcc
     2041 gtagcggtcg gtgaggaagc gcttgatctg cgcatcgctg cggccggcct tcacctgctc
     2101 gcggacgaca tgccgcaggt cggcggcgag ttcggcctcg gaatcgtcga tcgactcgtt
     2161 ctggcagacc agacagcgga cgtcggcgaa gatcgcccgg gcgcgggcct cctgggcggg
     2221 atcggccagg cggtcggccg gatcggcggc cgcggcgagg cacaggacgc ccgcgaacat
     2281 cgccgccagc gcccgaaggc tcaccttggg cctcacgccg gctgctcccg cctgcgccgc
     2341 gccacgccca gccgcatctt gcggtcggag agcgaagtga ggccgcccag cgccatcagc
     2401 acgggcccca ggaagatcag ggtggcccag gggttccagt aggcgcggat cagccagacc
     2461 ggcgcacccc ccgttccttg agaatttggg gtcgcaaccc gcttctcccc cagcaccatg
     2521 tagagatgcg aggcgccgcg gtaacagatg gcgatcccgg aaacggtctg gcctccggcc
     2581 ggatagaaac gccggttggg ctcggccacg cagaccggct tgccgtcgcg ggtgacgcgc
     2641 aggatggcgc gctcggaatc gtagttgggc ccgtccaccg gcccgacgtc ctccagcacc
     2701 aggtgatagc cggccacgtc caccgccccg ccgatcggca gggcctcggc ggcctcggcc
     2761 ttccagccca gctcgaaaca ggcgcccagc acgaagacgc ccaacccca
//
LOCUS       DATAJL010000433         4571 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20506,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000433 DATAJL010000000
VERSION     DATAJL010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4571
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20506"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..638
                     /locus_tag="VHN39_08265"
     CDS             <1..638
                     /locus_tag="VHN39_08265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family protein"
                     /protein_id="HEX2816373.1"
                     /translation="PVLGEPMIGRQVERLRRARRIDKLVVATSNDASDDSLAAYCESL
                     ELMVFRGSLNDVLGRFRGALAQHPDAEAVVRLTADCPLADPELIDQVVAHHHEVAADY
                     TSNTLGARTYPHGLDVEVIRPGALVEAAERASDPYEREHVTPYIYRRPEVYRLAGVAR
                     RESLAALRWTVDFPQDLAFVREVYAKLYPFDPEFGSDAIAALDVNTAKAPA"
     gene            635..1207
                     /gene="pseH"
                     /locus_tag="VHN39_08270"
     CDS             635..1207
                     /gene="pseH"
                     /locus_tag="VHN39_08270"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEX2816374.1"
                     /translation="MSGAPQVVLRPVEAADQDRLLVWRNLPEIARWMYSDHAIAPQEH
                     ARWFAGALADPRRRYWVIEADGLPVGLANLYDLAAEHRRTAWAYYLADPSTRGQGIGA
                     FVEYWVIEHVFGALALNKLWCEVLIGNEAVWRLHEGFGFQREALFRQHVLKNGELTDV
                     VGLGLLASDWAATREASRARLMSRGFELPA"
     gene            complement(1380..3182)
                     /locus_tag="VHN39_08275"
     CDS             complement(1380..3182)
                     /locus_tag="VHN39_08275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2816375.1"
                     /translation="MPRQAQPTATSARALQTGALQSAAPAPQAFTSDAVGEAGSAAAL
                     AKLNSAVAELKAMAIAPMLQRAIDAIRAEDAKSAYDWAVKALDHDEKSGLGWYLLGIA
                     LERAGDFANSVRAYEAALKLLPDHGEVACDLGRLALRLGMKPQAEDLFRRFLERYPDD
                     PEAANNLVCAIRDQGRHDEAIETLRPAILKMPDNPMLWNTMGTILSDQGDFTNAQVFF
                     AEALRLDPKHPKARHNLANVLLMQGDIEGALVENAAATKGVKAEDDRQMMRLARSTML
                     HCVGRIGEGWDEYESRIHPQFNGRTAFAIDRPRWEPGADLAGKSFLVVCEQGLGDEVL
                     FANVLPDLIERLGPEGKLTIAVESRLVPLFQRSFPLATVGAHATYDVGGVLTRVVPFI
                     GDGSTINLWSPVASLMREFRRSVDTFPSRPSFLVADPKRVAHWRSVLKTAPAGLKVGL
                     LWKSAITRDARHRYFAAFADWAPVFAQKGVTFVNLQYGDCAEELAAAKQDFGIEIWSP
                     PGIDLRQDLDDIAALSCALDLVVGFANATFNIAAACGTPNFLVSVPGAWTRLGTETMP
                     WYPSTRVFLPPGFGQWDAVMAEVADAVGTFVAER"
     gene            3416..3811
                     /gene="flbT"
                     /locus_tag="VHN39_08280"
     CDS             3416..3811
                     /gene="flbT"
                     /locus_tag="VHN39_08280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0048027 - mRNA 5'-UTR binding [Evidence
                     IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA];
                     GO_process: GO:1902209 - negative regulation of
                     bacterial-type flagellum assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis repressor FlbT"
                     /protein_id="HEX2816376.1"
                     /translation="MPLKLSLKPGEKFVLNGAVVQNGDRRGVLVLQNKASVLREKDIM
                     QESEVTTPARHIYFPVMMMYLDEAGADRYYDEFVRRLTEFMNVIGNPAILTECVEISK
                     NCMEREYYKALMRCRKLMDYEDERLGNVP"
     gene            3801..4175
                     /gene="flaF"
                     /locus_tag="VHN39_08285"
     CDS             3801..4175
                     /gene="flaF"
                     /locus_tag="VHN39_08285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis regulator FlaF"
                     /protein_id="HEX2816377.1"
                     /translation="MSLKAYQKAATWAESPRQMEYRLFAEVTLALMEAAKTDPTDIPA
                     RIDVLDWNRRVWTALSDDCSSPGNGLPAPLRASIISLAIWVARHTSAVIRRQEQIEPL
                     IEINRTIMQGLAPAPVAASAAA"
BASE COUNT          775 a         1450 c         1565 g          781 t
ORIGIN      
        1 cgccggtgct gggcgagcct atgatcggcc gccaggtgga gcggttgcgg cgcgccaggc
       61 gcatcgacaa gctggtggtc gccaccagca acgacgccag cgacgattcc ctggcggcct
      121 attgcgagag cctggagctg atggtgtttc gcggatccct gaatgacgtg ctggggcgct
      181 ttcgcggggc gctggcgcag catcccgacg ccgaggccgt tgtgcggctg accgccgatt
      241 gcccgctcgc cgatccggag ttgatcgacc aggtggtggc gcatcaccac gaggtggcag
      301 cggactacac gtccaacacg ctgggagccc gcacctatcc ccatgggctc gatgtcgagg
      361 tcatccggcc tggcgccctg gtcgaggccg ccgaacgcgc cagcgacccc tacgagcgcg
      421 agcacgtgac gccctacatc taccggcggc cggaggtcta tcgcctggcg ggggtggcgc
      481 ggcgcgagtc cctggcggcg ctacgctgga cggtggactt cccgcaggac ctggccttcg
      541 tccgcgaggt ctacgccaaa ctctatccgt tcgatcctga gttcggttcc gatgcgatcg
      601 cggccctgga cgtcaacacc gcaaaggcgc cggcgtgagc ggcgcgccgc aggtcgtgct
      661 ccggccggtg gaggccgccg accaggaccg gttgctggtc tggcgcaacc tgccggagat
      721 cgcgcgctgg atgtacagcg atcatgcgat cgcgccgcag gagcacgcgc ggtggttcgc
      781 cggcgccctg gccgacccgc ggcggcgata ttgggtcatt gaggccgacg gcctgccggt
      841 aggtctggcc aacctctacg acctggcggc agagcaccgc cgcacggctt gggcctatta
      901 cctggccgat ccatcgaccc gtggccaggg catcggggct ttcgtggaat actgggtgat
      961 cgagcacgtc ttcggggcgc tggccctcaa caagctctgg tgcgaggtgc tgattggcaa
     1021 tgaagcggtc tggcggctgc acgagggctt cgggttccag cgcgaggcgc tgttccggca
     1081 gcatgtcctc aagaacggcg agctgacgga tgtggtgggc ctgggcctgc tggcgtccga
     1141 ctgggcggcg acgcgcgagg cgagccgggc cagactgatg tcgcgcgggt tcgagcttcc
     1201 ggcctagtgt cccggttccg aagttcgcac gcgctcgcgg caggcaccgg acgaacttcg
     1261 gaatcgatga ggacactggg gagtctatgt ctctagtgtg cttctttgga tttgaagttc
     1321 gctcggcgca tggccttgaa tgaggcgaac ttcaaatcca gcacactagt cgcgacaggt
     1381 cagcgttcgg cgacgaaggt tccgaccgcg tccgccacct cggccatcac cgcgtcccat
     1441 tggccaaagc cgggcggcag gaacacgcgg gtcgagggat accagggcat ggtctcggtc
     1501 cccagccttg tccaggcgcc cgggaccgaa accaggaagt tgggcgtgcc gcaggctgca
     1561 gcgatgttga aggtggcgtt ggcgaagccg accaccaggt ccagggcgca ggagagtgcg
     1621 gcgatgtcgt cgagatcctg cctgaggtcg atgcccggcg gcgaccagat ctcgataccg
     1681 aagtcctgct tggcggcggc cagttcctcg gcgcagtccc cgtactgcag gttgacgaac
     1741 gtgacgccct tttgcgcgaa taccggcgcc cagtcggcga aggccgcgaa atagcggtga
     1801 cgagcgtccc gggtgatcgc gctcttccag agcaggccga ccttgagtcc ggccggcgcc
     1861 gttttcagca cgctgcgcca gtgcgccacc cgttttgggt cggcgacgag gaagctgggc
     1921 cgggatggga aggtgtccac cgagcgccgg aactcgcgca tcagcgaggc gacggggctc
     1981 caaaggttga tcgtcgagcc gtcgccgatg aaggggacga cgcgagtcag cacaccgccg
     2041 acgtcgtagg tggcgtgggc gccgaccgtg gccaggggga aggagcgctg gaagagcggc
     2101 acgagccggc tctccaccgc gatggtgagc ttgccctcag gtcccaggcg ttcgatcaag
     2161 tcgggcagga cgttggcgaa cagaacctcg tcgcctaggc cctgctcgca gaccaccagg
     2221 aacgacttgc cggccaggtc cgcgccgggt tcccagcgcg ggcggtcgat cgcaaaggct
     2281 gtgcgcccgt tgaactgtgg atggatgcgc gattcgtact cgtcccagcc ctcgccgatg
     2341 cgtccgacgc aatggagcat ggtcgagcgg gccagacgca tcatctggcg gtcgtcctcc
     2401 gccttcacgc ccttagtcgc ggcggcgttt tccaccaaag ccccctcgat gtcgccctgc
     2461 atgagcagga cgttggcgag gttgtgccgc gccttggggt gtttcgggtc gagccgcagc
     2521 gcctcggcga agaacacctg ggcgttggtg aagtcaccct ggtcggagag gatcgtcccc
     2581 atggtgttcc acagcatggg attgtccggc atcttgagga tcgccggccg cagggtctcg
     2641 atggcctcgt cgtgacggcc ctggtctcgg atcgcgcaga ccaaattgtt ggcggcctcg
     2701 gggtcgtccg ggtagcgctc caggaagcgg cggaacagat cctcggcctg cggtttcatg
     2761 cccagccgaa gggccagccg cccgaggtcg caggcgacct ctccatggtc cggcagcaac
     2821 ttgagggccg cttcataggc ccggacggag ttggcgaagt cgccggcccg ttccagggcg
     2881 atccccaaga ggtaccagcc gaggccgctc ttctcgtcat gatcgagcgc cttgacagcc
     2941 caatcgtagg cgctcttcgc atcctcggcg cggatcgcgt cgatggcgcg ctgcagcatc
     3001 ggcgcgatcg ccatcgcctt gagttcggcg accgcgctgt tcagcttggc aagggcggcg
     3061 gcggagccgg cctcgccgac cgcgtcggaa gtgaacgctt gaggcgccgg cgccgcggat
     3121 tgcagcgcgc ccgtttgtag cgctctggcg gacgtggcgg tgggctgggc ctggcgcggc
     3181 atgaaaacgg agtctccgag agaatggccc aactcctcgg tcaacatggc taacgggagc
     3241 ttaaggcgcc ggcggaatcc cgggcggccg cgtcatttgc gctggcggtg gcttcggcaa
     3301 tcgaccgtta acccggggcc gcttaactct gccgtgcgcg aaacctgaca cagggtgaca
     3361 atggcgcgtt cgagtcgcga tgacgattcg caggcgctga gatcgggagg cgggtttgcc
     3421 gctaaaattg tcgctgaagc caggtgagaa gttcgtcctc aacggcgccg tcgttcagaa
     3481 tggcgaccgc cgcggggtcc tcgtcctgca gaacaaggcc tccgtcctgc gtgagaagga
     3541 catcatgcag gagtccgagg tcaccacgcc ggcgcggcac atctacttcc cggtgatgat
     3601 gatgtacctc gatgaggccg gggcggatcg ttactacgac gagttcgtcc ggcgcctgac
     3661 cgagttcatg aatgtcatcg gcaatcccgc gatcctcacc gagtgcgtgg agatctccaa
     3721 gaactgcatg gagcgggaat actacaaggc gctgatgcgg tgccggaaac ttatggacta
     3781 cgaagacgag aggctgggca atgtccctta aggcttatca gaaggcggcg acctgggctg
     3841 aaagtccgcg tcagatggaa taccgcctct tcgcggaggt gacgcttgcg ctgatggagg
     3901 cggccaagac cgatcccacc gatattccgg cgcgcataga cgttctggat tggaatcgtc
     3961 gcgtctggac cgcgctgagc gacgactgct ccagtcccgg caacggcctg ccggcgccgt
     4021 tgcgcgcctc gataatctcg ctcgccatct gggtggcgcg gcacaccagc gccgtgatcc
     4081 ggcgccaaga gcagatcgag ccgctgatcg aaatcaaccg cacgatcatg caggggctcg
     4141 cccccgcgcc agtggcggcc agcgctgcgg cctgacgccg ccgcgaggcc ttcttaccaa
     4201 taccccaaga cacttctaaa gcccggattc ccgcgccgct ctggcgcgcg cgtcgtcgcg
     4261 tccgacgctt tttgccgggc cgcccggcag gttttgccga gcggccgttc agctcggcaa
     4321 aatctgccgg actcaggcat ggataacaga cctataacat cattatttca aacgcttatg
     4381 ggcggtctac ctcggctaca agatggcccg atgcttgctc attgaggatc cgagcaaaac
     4441 gctcacggct gccaaaatga cggccgaaga cctgagaaaa ggacgatccc aatgagcttt
     4501 tcggttaaca ccaacgccgg cgccctcgtc gccctgcaga accttagcgt cacgcaggcg
     4561 caactgcaga c
//
LOCUS       DATAJL010000434         3313 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_67492,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000434 DATAJL010000000
VERSION     DATAJL010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3313
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67492"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..942)
                     /locus_tag="VHN39_08290"
     CDS             complement(28..942)
                     /locus_tag="VHN39_08290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEX2816378.1"
                     /translation="MLTAILFLLALAAVFYVAVLVRGALAQGALRPAWEPTAVGAVVN
                     FFDTLGIGSFAPTMAWLKVRVRMPDRQIPCTLIVACTLPTIVQAVIFMVLLGVHVDTL
                     LVAAYSVALLAGGMAGTRVVTGVRIWIVQAVVAAALLIAAALYAASNLHLLPAGGAAA
                     ALPVPLMIAAIAASFVMGVLLNFGVGHYAPSLLMFSLMGMDPRLVFPIMATGGALAAA
                     VVSARHIKTRVADIRIAVGFALGGVPAVLVAAFIVKDMPVVWLRWLVIAVVVYAASVM
                     LRDAVRTFRLGPAGGDEVALAQAEGLTD"
     gene            1089..2069
                     /locus_tag="VHN39_08295"
     CDS             1089..2069
                     /locus_tag="VHN39_08295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816379.1"
                     /translation="MRILASLVALSLLLAAPFAQARPPPKPDAPLQLIDLTPAFATAW
                     ARAQTLPEDERVAAFDSDFAHLLPGFYDPARFDTPAARDRYGPRLLKQLNAFPTQRAG
                     IEDVSRRFSGMFAPALASFEARFGPMTGYPPVYLVHSLGEFDGGTRDLTDGSRLLFGA
                     DLIARIHTGDHAIQPFFHHELFHILHARSFKGCGQVWCSLWTEGLAVYVASQLNPSAT
                     DEALLLTLPEPIRPAVEKDRAAAVCAVTQRLESTDPADYAGLFTFSRLSPSLPPRFGY
                     YVGYLVAQELGKTRSVGELSKLDNARVRPLVVAALHSLADCGAATSPGPA"
     gene            complement(2047..>3313)
                     /locus_tag="VHN39_08300"
     CDS             complement(2047..>3313)
                     /locus_tag="VHN39_08300"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX2816380.1"
                     /translation="SRAVLAFALAMSLAPGAGAWSQPANPYPPGPDYAGVAGSAAENV
                     RITALCGGNRNAKDGYFAPPARADQTRAPQVKSKTAFKVEVLAKLDRSVGLAYLPGGD
                     LLVSQRAGGLRVVDAKGVVSEPLKGTPQIAGPMGTSNTGPVLDHDFARTRILYYGYTT
                     APPAKGEAPMGHVLKAKLSADEHALEDVSTIYEAANFAPRRIVQARDGTLLIPSAEVA
                     SGGPNPQSMTDPRGKVLRIKTDGSIPADNPFVKTAGANPALYALGFRDIQGAALNPAT
                     GELWVGENEPMGGDELNRIKSGGNYGFPEISYGRQNSGALINGGKTAQAGMEQPVYFW
                     TPSIAPSGLAFYTGKAFPAWKGDVLVGAMSGQQLVRLEMKNGRVVGEEKLLLDRCKRT
                     KDVSQGPDGLIYVITDESPSEILRLVPAK"
BASE COUNT          475 a         1224 c         1130 g          484 t
ORIGIN      
        1 gggtgcaggc gcggccctga cccgcgccta gtcggtcagc ccctcggcct gcgccagcgc
       61 gacctcgtcg ccgcctgcgg gcccgagccg gaaggtcctg acggcgtcgc gcagcatcac
      121 gctcgcggcg tagaccacca ccgcgatgac cagccagcgc agccacacca ccggcatgtc
      181 cttgacgatg aaggcggcga ccagcacggc aggcacgccg cccagcgcga aacccaccgc
      241 gatgcggata tcggccacgc gggtcttgat gtgccgcgcg ctgaccaccg cggcggcgag
      301 cgctccgccg gtggccatga tcgggaacac cagcctgggg tccatgccca tcaggctgaa
      361 catcagcagc gagggggcgt agtggccgac cccgaagttg agcagcacgc ccatcacgaa
      421 actggccgcg atggcggcga tcatcagggg cacgggcagc gcggcggctg cgccgccggc
      481 cggcagcagg tgcaggttcg aggcggcgta gagggcggct gcgatcagca gggcggcggc
      541 gaccacggcc tggacgatcc agatccgcac cccggtcacc acccgcgtcc cggccattcc
      601 gcctgccaag agcgccaccg aataggcggc caccagcagg gtgtccacgt gcactcccag
      661 gagcaccatg aagatcaccg cctgcacgat ggtcggaagc gtgcaggcca cgatcagggt
      721 gcagggaatc tggcgatccg gcatccgcac ccggaccttc agccaggcca tggtcggggc
      781 gaaggagccg atccccaggg tgtcgaagaa gttcaccacc gcccccaccg ctgtcggctc
      841 ccaggccggc cgcagcgcgc cctgggccag cgcgccccgc accagcacgg cgacgtagaa
      901 gaccgcggca agggccaaca ggaacaggat ggcggtgagc atgtcgtcgc tccctcggcg
      961 gctacgcgac ggccaagctt acccgcctag cggtgacagg cgcgcgcatc cctgtcgagt
     1021 cgtcgccgcc ccgatccttg ccccgaattc atttggccgg ccgggagccg ctgcctagct
     1081 tcggggccat gcgcatcctc gcttccctcg tcgccttgtc cctgctgctg gccgcgccgt
     1141 tcgctcaggc caggcctccg cccaagcccg acgcgccgct gcagctgatc gacctcaccc
     1201 cggcctttgc cacggcgtgg gcgcgcgcac agaccctgcc cgaggacgag cgggtggcgg
     1261 ccttcgactc cgacttcgcc cacctgctgc cgggcttcta cgaccccgcg cggttcgaca
     1321 ccccggccgc ccgcgaccgc tacggcccgc gcctgctcaa gcagctgaac gccttcccca
     1381 cccagcgcgc cggcatcgag gacgtcagcc gccggttctc cggcatgttc gccccggcgc
     1441 tcgccagctt cgaggcgcgc ttcgggccga tgaccggcta tccgcccgtc tacctggtcc
     1501 acagcctggg tgagttcgac ggcggcacgc gcgacctcac cgacggttcg cggctgctgt
     1561 tcggcgccga cctgatcgca cgcatccaca ccggcgacca cgccatccag cccttcttcc
     1621 accacgagct gttccacatc ctgcacgcgc gcagcttcaa ggggtgcggc caggtctggt
     1681 gcagcctgtg gaccgagggg ctggcggtct acgtcgcctc gcagctgaac cccagcgcga
     1741 cggacgaggc gctgctgctg accctgcccg agccgatccg gcccgccgtc gagaaggacc
     1801 gcgccgcggc cgtctgcgcg gtgacccagc gcctggagtc caccgatcct gcggactacg
     1861 cggggctctt caccttcagc cggctcagcc cgtcgctgcc gccccggttc ggctattacg
     1921 tgggctacct ggtggcccag gagctgggca agacccggtc cgtgggcgag ctctcaaagc
     1981 tcgacaacgc tcgggtccgc ccgctcgtcg tggccgccct gcatagcctg gccgactgcg
     2041 gcgcggctac ttcgccggga ccagcctgag gatctcgctc gggctctcgt cggtgatgac
     2101 gtagatcagg ccgtccgggc cctggctgac gtccttggtg cgcttgcagc ggtccagcag
     2161 cagcttttcc tcgcccacca cgcggccgtt cttcatctcc aggcggacca gctgctggcc
     2221 ggacatggcg cccaccagca cgtcgccctt ccaggcgggg aaggccttgc cggtgtagaa
     2281 ggccaggccg gagggcgcga tggacggggt ccagaaatag accggctgct ccatccccgc
     2341 ctgggcggtc ttgccgccgt tgatcagggc tccggagttc tggcggccgt agctgatttc
     2401 cgggaagccg tagttgccgc cggacttgat gcggttcagc tcgtcgccac ccatgggctc
     2461 gttctcgccg acccacagct cgccggtggc ggggttgagc gccgcgccct ggatatcgcg
     2521 gaagcccagc gcatagaggg ccggattggc gccggcggtc ttgacgaagg ggttgtccgc
     2581 agggatcgag ccgtcggtct tgatgcgcag caccttgccc cgcggatcgg tcatcgactg
     2641 tgggttgggg ccgccggagg cgacctcggc cgacgggatc agcagggtcc cgtcgcgcgc
     2701 ctggacgata cggcgcgggg cgaagttggc ggcctcatag atcgtcgaga cgtcttccag
     2761 cgcgtgctcg tcggccgaca gcttggcctt cagaacgtgg cccatcggcg cctcaccctt
     2821 ggccggcggg gcggtggtgt agccgtagta gaggatgcgg gtcctcgcga agtcgtggtc
     2881 cagcaccggg ccggtgttgc tggtccccat gggcccggcg atctgcggcg tccccttcaa
     2941 gggctcggag accacgccct tggcgtcgac gacgcgaagg ccgccggccc gctgcgagac
     3001 cagcaggtcg ccgccgggca ggtacgccag gcccaccgag cggtccagct tggccagcac
     3061 ctcgaccttg aacgccgtct tggattttac ctgcggcgca cgggtctgat cggcccgggc
     3121 cggtggggcg aagtagccgt ccttggcgtt gcggttgccg ccgcacagcg cggtgatccg
     3181 cacgttctcg gccgccgagc ccgccacgcc ggcatagtca ggcccgggcg ggtaggggtt
     3241 ggccggctgc gaccaggcgc ccgcgcccgg cgccaggctc atcgccagcg cgaaggccag
     3301 caccgctctc gaa
//
LOCUS       DATAJL010000435         2408 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46353,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000435 DATAJL010000000
VERSION     DATAJL010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46353"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..739)
                     /locus_tag="VHN39_08305"
     CDS             complement(<1..739)
                     /locus_tag="VHN39_08305"
                     /inference="COORDINATES: protein motif:HMM:NF016491.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030255 - protein secretion by the type IV
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEX2816381.1"
                     /translation="MSSCASLVNDGVIRGVLGAVDCQTRAFAEAGYSSLTGASSGFQV
                     ALTALLTIYVALVGYRMLFASGGARLSDAPGIALKIGAILALVTSWATFQTLVFDLAA
                     HAPGEIAAAVAAPLQANGGSLAADPVGGLQAAYDQLTQSAIAFGKQAGPNVKSYSSPA
                     AAAAETLSAAAGVLFMTTAGVIAAATLAIGVLTAVGPVFVALFLIPATRGLFVGWVRA
                     LAAAAFVPLLGWLVVILMLSVLEPWLIS"
     gene            complement(736..>2408)
                     /locus_tag="VHN39_08310"
     CDS             complement(736..>2408)
                     /locus_tag="VHN39_08310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VirB4 family type IV secretion/conjugal transfer
                     ATPase"
                     /protein_id="HEX2816382.1"
                     /translation="GPGPATFGAMISLKDYPARTAPGLLDGVLRLPMELVLTESFAFV
                     ERQQSLDRMSLALRRLRAADDDAYSLRSELAEARDDVGAGRAAYGEHHLTILAKAETL
                     GDLDGAVADVQSALAEAGAIAVREDTNLEPAFWAQFPGNFKFISRRALVSAANFASLA
                     SFHNHPTGQAENNHWGPAIAVLETTSFGPYHFNFHNADLGNFTVIGPSGSGKTVLLTF
                     LLAQAERLKPRIAYFDKDRGAEPFIRAIGGRYDVISPGEPTGFNPLALADTPANRAFL
                     ADWVGQLLTAEGGTLDAEDRAMIAEAVDANFAQAPGHRRLRYLRELFRGARRPHAGDL
                     AARLGAWCEGGEHAWLFDNASDRLDIDARILGFDMTKILDAPVIRTPAMMYLFHRLEQ
                     RLDGSPAIIVVDEGWKALDDPVFVRRIKDWEKTIRKRNGLVGFCTQSASDALESRIAS
                     AIIEQAATQVFFPNSRARAADYVEGFGLTEHEFELVRSLPDTSRCFLVKRGDHSVVAR
                     LDLSGLSGELAVLAGTERTVRRLEALRGELGDEPDAWLEPFMEGRSAA"
BASE COUNT          368 a          781 c          934 g          325 t
ORIGIN      
        1 ggctgatcag ccagggctcc agaaccgaga gcatcagtat gaccaccagc cagcccagca
       61 ggggcacaaa ggcggcggcc gcgagcgcgc gcacccagcc cacgaacagg cctcgcgtgg
      121 ccgggatcag gaagagggcg acgaagaccg gcccgacggc ggtgaggacc ccgatggcca
      181 gggtggctgc ggcgatcacg ccggcggtgg tcatgaagag cacgcccgcg gcggccgaca
      241 gggtctcggc ggcggccgcg gcggggctgg aataggactt cacgtttggc ccggcctgtt
      301 tgccgaaggc gatggccgac tgggtgagct ggtcgtaggc cgcctgcaga ccaccgacgg
      361 ggtcggccgc cagggagccg ccgttggcct gcagcggcgc ggccacggcg gcggcgatct
      421 cgccgggcgc atgggcggcg aggtcgaaga ccagggtctg gaaggtggcc cagctggtga
      481 ccagggccag gatcgccccg atcttcaggg ctatgccggg tgcgtcggag agccgcgcgc
      541 cgcccgaggc gaacagcatc cggtagccca ccagggcgac gtagatggtc agcagcgccg
      601 tcagggccac ctggaagccg gacgaggcgc cggtgagcga cgaatagccg gcctcggcga
      661 aggcgcgggt ctggcagtcg acggcgccca ggacgccgcg gatgacgccg tcgttgacca
      721 gggaggcgca ggaactcacg ccgcgctcct cccttccatg aagggctcca gccaggcgtc
      781 aggctcgtcg cccagttcgc cgcggagcgc ctcaaggcga cgcacggtgc gctcggtgcc
      841 ggccagcacc gccagctcgc cggagaggcc ggagaggtcg aggcgagcga cgacgctgtg
      901 gtcgccgcgc ttgaccagga agcagcgcga ggtgtcgggc aggctgcgga ccagctcgaa
      961 ctcgtgctcg gtgaggccga agccttccac atagtcggcg gcccgcgcgc ggctgttcgg
     1021 gaagaagacc tgggtggcgg cctgttcgat gatcgccgag gcaatccggc tctccagcgc
     1081 gtccgaggcg ctctgggtgc aaaagcccac caggccgttg cgtttgcgga tggtcttttc
     1141 ccagtccttg atccggcgca cgaacaccgg gtcgtccagg gctttccagc cctcgtcgac
     1201 gacgatgatc gcgggtgacc cgtccagccg ctgctccagg cggtggaaca ggtacatcat
     1261 ggccggcgtg cggatgaccg gcgcgtccag gatcttggtc atgtcgaagc ccaggatgcg
     1321 ggcgtcgatg tcgaggcggt cggaggcgtt gtcgaacagc cacgcgtgct cgccgccctc
     1381 gcaccaggcg ccgagccgcg cggccaggtc gccggcgtgc gggcgccgcg cgccgcggaa
     1441 gagctcgcgc agatagcgca gacgccggtg gccgggcgcc tgggcgaagt tggcgtcgac
     1501 ggcctcggcg atcatcgccc ggtcctcggc gtccagggtc ccgccctcgg cggtcaggag
     1561 ctggcccacc cagtcggcca ggaaggcgcg gttggcgggg gtatcggcga gggcgagcgg
     1621 gttgaagccg gtgggctcgc ccgggctgat cacgtcatag cggccgccga tggcgcggat
     1681 gaagggctcg gcgccgcggt ccttgtcgaa ataggcgatg cgcggcttca gccgctcggc
     1741 ctgggccagc aggaaggtca gcagcacggt cttgcccgac cccgatgggc cgatgaccgt
     1801 gaagttgccc aggtcggcgt tgtggaaatt gaagtggtag gggccgaagg atgtggtctc
     1861 cagcacggcg attgccgggc cccagtgatt gttctcggcc tggccggtgg gatggttgtg
     1921 gaagctggcc aggctcgcga agttggcggc ggagaccagg gctcggcgcg agatgaattt
     1981 gaagttgccc gggaactgcg cccagaaggc cggctccagg ttggtgtcct cgcgcaccgc
     2041 gatggcgccg gcttcggcca gcgccgactg gacgtcggcc accgcgccgt cgaggtcgcc
     2101 cagggtctcg gccttggcga ggatggtcag gtggtgctcg ccataggcgg cgcggccggc
     2161 gcccacgtcg tcgcgagcct cggccagttc ggagcgcagg ctgtaggcgt cgtcgtcggc
     2221 ggcgcgcagg cggcgcaagg ccaggctcat gcggtccagc gattgctgac gctccacgaa
     2281 ggcgaagctc tcggtgagca ccagctccat gggcagacgc aggaccccgt ccaacaggcc
     2341 cggcgccgtg cgggccggat agtccttcag cgagatcatc gccccgaagg tcgcggggcc
     2401 cgggccgg
//
LOCUS       DATAJL010000436         3003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_82057,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000436 DATAJL010000000
VERSION     DATAJL010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82057"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VHN39_08315"
     CDS             <1..193
                     /locus_tag="VHN39_08315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816383.1"
                     /translation="LKKGEMAEQAQDLLAGSGWLPEPLRTPGRIVTAAVPDAGAERPT
                     DTGPVGGVDPAEDWQTAAE"
     gene            270..1424
                     /locus_tag="VHN39_08320"
     CDS             270..1424
                     /locus_tag="VHN39_08320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEX2816384.1"
                     /translation="MPDRIADIARRLAAQAEAVCRHYLSNGRREGRYWLVGDVHNTPG
                     RSLYVRLRGSESDPRKAGRWTDSATLEHGDLLDLIAAARGLDGIGEALDEARRFLGLA
                     RSAAPSRSPSSVQPATCFPSADIPASDAAATLVRSGHGTALASAPTGSAEAARRLFRM
                     SRPIAGTLASVYLRERGIDVTPDMAALRFHPRCWYRPEADSPDGARDAWPALIAAVTS
                     HDGVVTGVHRTWLDPSGRTKAPIAVPRRAMGHLLGHAVRFGPAGDVLAAGEGIETMLS
                     LRKVLPDLPLAAALSAAHLAGMLFPPGLRRLYIVRDNDAAGRHAEAVLMARAQAKGVE
                     ALTLAPALGDFNDDLRQRDPALLAASIRDQLAPEDVTPFWRATEQAGHVR"
     gene            1767..2756
                     /locus_tag="VHN39_08325"
     CDS             1767..2756
                     /locus_tag="VHN39_08325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007605944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2493 domain-containing protein"
                     /protein_id="HEX2816385.1"
                     /translation="MTDQSFSDREPPHAVSATASVLTELQLYGHRPFQDEPDPRPLPE
                     ERTVRTALADIFDALVSTLTDTRLEPDLEDLLWSTVNLFHRAADRVERELDSNEQAQK
                     RSQKEQDGSEIRSVELERLLAEGTTLIERRNAFEVMRDQAADLFDSHTGSAWRPRTGS
                     KVNHRTLTAAMIDSRDFLAAKHRAETEVMLPPGPKVAFTGGYACNDHVTIWAVLDRVQ
                     AKHPGMVLLHGGSPKGAERIAACWADARKVPQVAFRPDFTRHKNAAPFKRNDQLLDVL
                     PIGVVVFPGSGISDNLADKARTLGIPLFDFRKGEGQQGSADAVRGKLTGGGGG"
BASE COUNT          458 a         1078 c          999 g          468 t
ORIGIN      
        1 cctcaagaag ggcgagatgg ccgaacaggc gcaggacctg ctggccgggt ccggctggct
       61 gccggagccg ttgcgcacgc ctggccggat cgtgaccgcg gcggtgcccg acgcgggcgc
      121 cgaacggccg acagacaccg gcccggttgg gggcgttgac ccggccgagg actggcagac
      181 cgcggcggag tagttcatta tttgttctta ctcctgttaa ctgggaggcc cgtcggcgat
      241 cggcgggcct cgacttttcg gaggtcacca tgccggaccg cattgccgac atcgcgcgcc
      301 gcctcgccgc gcaggccgag gcggtgtgcc gccattatct ctcgaacggt cgtcgtgaag
      361 gccgctactg gctggtcggc gacgtccaca acaccccagg gcgcagcctc tatgtgcggc
      421 tgcgcgggtc agagtccgac ccgcgtaaag ctggtcggtg gaccgattcg gcgaccctgg
      481 aacatggcga cctgctcgac ctgatcgcgg ccgcccgcgg cctggacggg atcggcgagg
      541 cgctggacga ggcacggcga tttctcgggc tggccagatc cgccgcaccg tctcggtctc
      601 cttcttccgt ccaacctgct acatgttttc cgtccgcgga cattccagct tctgacgccg
      661 ctgcaacctt ggttcgctct ggccatggaa ccgcgttggc ttctgccccg accggatcag
      721 ccgaagccgc gcgccgtctg ttccggatgt ccaggccgat cgccggcacg ctcgccagcg
      781 tttacctgcg agaacgcggg atcgatgtga ccccggatat ggccgcgctg cgctttcatc
      841 cgcgctgctg gtaccggccg gaggccgaca gtccggacgg cgcccgcgac gcttggccgg
      901 cgcttatcgc ggcggtcacc agccacgacg gcgttgtcac cggtgtccat cgcacctggc
      961 tcgatccgtc cggccgcacc aaagcgccga tcgccgtgcc gcggcgggcg atgggtcacc
     1021 tgctgggcca cgcggttcgc ttcgggccgg cgggcgacgt cctggcggcc ggcgagggca
     1081 tcgagacaat gttgtcgctg cgcaaggtcc tgcctgacct gccgctggcc gctgccctgt
     1141 cggccgcgca tctcgccggc atgctgttcc cgcccgggct gcgccggctc tacatcgtcc
     1201 gcgacaacga tgcggccggg cgacacgcgg aggcggtgtt gatggcacga gcgcaggcca
     1261 agggcgtcga ggcgctgacc ctggcgccgg cgttgggaga cttcaacgat gatctgcggc
     1321 aacgcgaccc cgctttgctc gcagcgtcga tccgcgacca gctcgcgccg gaggacgtca
     1381 ccccgttttg gcgcgcaacg gagcaggcgg ggcacgtccg ctgagtctgc tcccgcagag
     1441 gctgaggact ctgccgtcag cgtggcttga tccgggctga agagccgcac ccctggcctt
     1501 ctgagagggc gatcggagcc gaggcggcgc gggccggcaa cggctaaggt cggctatttt
     1561 ccgccggcgc caggacaccc cacgcgaacg cgcgcgggga ccccgtcagg acgcctttgc
     1621 atcgcgaaac aaaatagccg ccccacgccg tcctccgctg cgctgcggcc gctcggcctg
     1681 tggccggcgg tgcaagcccg tgccgccccc gctcttcgac gcctgcgaag gccgcgatgg
     1741 gcgcggccag ccggagcccc accacgatga ccgatcagtc cttctcagac cgcgagccgc
     1801 cccacgccgt atccgccacc gcctcggtgt tgaccgaact ccaactctat ggacaccgcc
     1861 cgttccagga cgaaccagac cccaggccgc tgccggagga acgcaccgtc cgcaccgccc
     1921 tggccgacat cttcgatgcc ctggtctcga ccctcaccga cacccgcctg gagcccgacc
     1981 tcgaagatct gctctggtcc accgtcaacc tgttccaccg cgcggccgac cgggtcgaac
     2041 gcgaactcga cagcaacgag caagcgcaga agcgcagcca gaaagagcag gacggctcgg
     2101 aaatccgctc ggtcgagctg gagcggctgc tggccgaggg caccacactg atcgagcggc
     2161 gcaacgcctt cgaggtgatg cgcgatcagg ccgcggacct tttcgacagc cacaccggct
     2221 ccgcctggcg tccccgcaca ggctcgaagg tgaaccaccg tacgctgacc gcggcgatga
     2281 tcgacagccg cgatttcctg gcggccaaac accgggcgga aaccgaggtg atgctgccgc
     2341 ccggtcccaa ggtcgccttc accggcggtt acgcgtgcaa cgaccacgtg acgatctggg
     2401 cagtgctcga ccgggtgcag gccaagcatc ccggcatggt gctgctgcac ggcggttcgc
     2461 cgaagggcgc cgagcgcatt gccgcctgct gggcggacgc ccgcaaggtg ccgcaggtcg
     2521 ctttcaggcc ggactttacc cgccacaaga acgccgcccc gttcaagcgc aacgaccagc
     2581 tgttagacgt actgccgatc ggcgtcgtgg tgttccccgg ttccggcatc agcgacaacc
     2641 tcgccgacaa agccaggacg ctcggcatcc cgctgttcga cttccgtaag ggcgaaggtc
     2701 agcaagggtc cgcggacgca gtccgtggaa aactgaccgg cggcggcggc gggtaagcgc
     2761 cgctgaccct ctctcgtccg gcccgtcgtc caatgggcct cgccgagcgg tcgctctccg
     2821 gcctccgcgc cgccccgtca tggcgaaccg ccggtctgag tgactggctg gacgaggctg
     2881 cattctttat cgcggttcac gggttcctcc gcgagaagct gtcgccttca ggcgacagag
     2941 ggatagcggc ggcgagcgcc gctcgcctct ccgtgtctgg gctacattga gcggttccta
     3001 tac
//
LOCUS       DATAJL010000437         4177 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46411,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000437 DATAJL010000000
VERSION     DATAJL010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4177)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4177)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4177
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46411"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..747
                     /locus_tag="VHN39_08330"
     CDS             <1..747
                     /locus_tag="VHN39_08330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2816386.1"
                     /translation="VENSALLPWLRRQHGQGALVVGVCTGAAYLAEAGLLDGRMATTH
                     WALSDKFAQRYPQVNWRPDLFITEDSRMLCSGGVFASVDVSLYLVEKLCGHEVAVKCA
                     KSLLLPMPRIHQTGYAMQTVSQPHGDERIRGVEAFLQANFHNDISTQSLADRAGLGER
                     TFVRHFKAATGQLPAGYVQALRIQAAKAMLERDAKPVQAISSDVGYDDVAFFRSLFKR
                     IVKMTPSEYRANFAPLNVRSQSELEASQLN"
     gene            811..1335
                     /locus_tag="VHN39_08335"
     CDS             811..1335
                     /locus_tag="VHN39_08335"
                     /inference="COORDINATES: protein motif:HMM:NF020909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HEX2816387.1"
                     /translation="MATSLYDLSVASYLQTVGAVAGFLDRAAKHCAETGADPDEFVGV
                     QLFDDMAPFHFQIRSVAHHSVGALEGVKSGLFHPPAAVGPLPFADLQAMVAKTDETLR
                     ALAPDEVNGWAGKDVSFQIGEMKIPFTAENFILSFSLPNFHFHATTAYDILRMKGVPL
                     GKRNYLGHMRMKAA"
     gene            1386..1910
                     /locus_tag="VHN39_08340"
     CDS             1386..1910
                     /locus_tag="VHN39_08340"
                     /inference="COORDINATES: protein motif:HMM:NF020909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1993 domain-containing protein"
                     /protein_id="HEX2816388.1"
                     /translation="MATSLYDLSVASYLQTVGAVAGFLDRAAKHCAETGADPDDFVDA
                     RLFEDMAPFHFQIEAAWHHSVWGLEAIKTGVFAPPALVGAASFADLQVMIAKAETALK
                     AFTPDEVNSWAGKNLDLQIGPRWLQFTSETFILSFSLPNFHFHAVTAYDILRTQGVPL
                     GKRDYEGQMRLRTA"
     gene            1992..2792
                     /locus_tag="VHN39_08345"
     CDS             1992..2792
                     /locus_tag="VHN39_08345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2816389.1"
                     /translation="MSDVMDKAAAGLTGKLFDLTGKVAVITGSSRGIGRAIAEQMAAH
                     GAKVVISSRKAGPCEEVAAVINGRAAGHAIAVPANISSKDDLQRLMDETRKAFGKIDI
                     LVCNAASNPFYGSQLDISDDAFGKILTNNIVANNWMIGMVAPEMKERKDGAIIIVSSI
                     GGLRGSEVIGAYCISKAADMQLARNLARELGPHNIRVNCVAPGLVKTDFAKALWDTPA
                     GEERASSGTPLRRLGEPDDLAGAAVYLASRAGAWTTGQTFVVDGGSTC"
     gene            complement(2801..3469)
                     /locus_tag="VHN39_08350"
     CDS             complement(2801..3469)
                     /locus_tag="VHN39_08350"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2816390.1"
                     /translation="MSVLGDPKLQAIIDRLQAQSVAQEAQTNAYFAERIKKGDLSWEG
                     FDDRLTSFMADKLVALEPVKAEFCHLMCRSLRATRVIEVGTSFGVSTLYLAAAVRANG
                     GGTVIGTEHEPAKAAAARATFAEAGLTDLIDLREGDLRQTLKAIEGPVDFVLMDIWTE
                     MARPAMELITPHLRPGGVVIADNTVQSARGYAAFFAFVNDPANGLTTLTLPFDGGLEM
                     VVKG"
     gene            complement(3466..3843)
                     /locus_tag="VHN39_08355"
     CDS             complement(3466..3843)
                     /locus_tag="VHN39_08355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816391.1"
                     /translation="MPATLRHFAINADDVPRAKRFYEEVFGWTFTPWGPPGFYQTRTT
                     GDGHMGALQGRRDIGGLKMPGMEISFGVDDIHATIAAIEANGGKVLMPPFHIETVGHL
                     IFFQDTEGNVAGAMQYESVQWPQ"
     gene            3913..>4177
                     /locus_tag="VHN39_08360"
     CDS             3913..>4177
                     /locus_tag="VHN39_08360"
                     /inference="COORDINATES: protein motif:HMM:NF014376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family ligand binding domain-containing
                     protein"
                     /protein_id="HEX2816392.1"
                     /translation="MSQPRQNVRDPDGFPVRGLAVTYRDGHVLDRHTHPWAQLVYAAS
                     GVMRIATPTATWLTPPTRAIWVPAGTAHEIEMRGTVAMRTLYLA"
BASE COUNT          680 a         1457 c         1364 g          676 t
ORIGIN      
        1 gtggagaaca gcgcgctcct gccctggctg cggcgccagc acgggcaggg cgccctggtg
       61 gtcggggtct gcacgggcgc ggcctatctg gcggaagccg gcctgctgga cgggcgcatg
      121 gcgaccaccc attgggcgct ctccgacaag ttcgcccagc gctatccgca ggtgaactgg
      181 cggcccgacc tgttcatcac cgaagacagc cggatgctct gctcgggcgg ggtgttcgcc
      241 tcggtcgacg tcagtctcta tctcgtcgag aagctctgcg gccacgaggt ggcggtgaag
      301 tgcgccaagt cgctgctgct gcccatgccg cgcatccacc agacgggcta cgccatgcag
      361 accgtctccc agccgcacgg cgacgaacgg atccgcggcg tcgaggcctt cctgcaggcc
      421 aacttccaca acgacatctc gacccagtcc ctggccgatc gggcggggct cggcgagcgg
      481 accttcgtgc ggcatttcaa ggccgccacc ggccagcttc cggcgggcta cgtccaggcg
      541 ctccgcatcc aggccgccaa ggccatgctg gagcgcgacg ccaagcccgt ccaggcgatc
      601 agttccgatg tgggctacga cgacgtggcc ttcttccgga gcctcttcaa gcgcatcgtc
      661 aagatgacgc ccagcgagta ccgcgccaat ttcgccccct tgaacgtgcg cagccaatcc
      721 gaactcgagg cctctcaact gaactgagtt cccgtccgcg gcgtccctgt gccagaaggt
      781 tcaggacttg aactccggag gacggcgacg atggcgactt cactctatga cctcagcgtg
      841 gcgagctacc tgcagacggt aggcgcggtg gccggcttcc tcgaccgcgc ggccaagcac
      901 tgcgccgaga ccggcgccga cccggacgaa ttcgtcggtg tgcagctctt cgacgacatg
      961 gccccctttc atttccagat tcgctcggtg gcgcaccact cggtgggcgc gcttgagggc
     1021 gtgaaaagcg ggctgttcca tccgcccgcc gccgtcgggc cgctgccctt cgccgacctg
     1081 caggccatgg tcgccaagac cgatgagacc ctgcgcgcgc tcgcccccga cgaggtcaat
     1141 ggctgggcgg gcaaggacgt ctcgttccag atcggcgaga tgaagatccc cttcacagcg
     1201 gagaacttca tcctctcgtt ctcgctgccc aattttcatt tccacgccac caccgcctac
     1261 gacatcctgc ggatgaaggg cgtgccgctc ggcaagcgga actatctcgg gcacatgcgg
     1321 atgaaggcgg cctaaccggc ggcggttggc atgggggccg cgacctgtgc ttcaggggat
     1381 ttgcgatggc gacttcactc tatgacctca gcgtggccag ctacctgcag acggtgggcg
     1441 ccgtggccgg cttcctcgac cgcgccgcca agcattgcgc cgagaccggc gccgaccccg
     1501 acgacttcgt ggacgcgcgc ctcttcgagg acatggcgcc cttccatttc cagatcgaag
     1561 ccgcgtggca ccattcggta tggggccttg aagccatcaa gaccggcgtg ttcgcaccgc
     1621 ccgccctggt cggagcggcc tcattcgccg acctgcaggt catgatcgca aaggcggaaa
     1681 ctgcgctgaa ggcgttcacc cccgacgagg tcaacagctg ggccggcaag aacctggatc
     1741 tccagatcgg cccgcggtgg ctccagttca cctccgagac cttcatcctc tccttctcgc
     1801 tgcccaactt ccatttccac gccgtcaccg cctacgacat cctgcggacg cagggcgtgc
     1861 ccctgggcaa gagggactac gagggccaga tgcggctgag gacggcctag gcggcgggct
     1921 tgccttgacg cgtcgccggc cggcatcgca aatggccgaa aatcaaacag ccgtttcaga
     1981 ggatacgcac catgagcgac gtgatggaca aggctgctgc gggcctgacc ggcaagctgt
     2041 ttgacctcac cggcaaggtg gcggtgatca ccggttcctc gcgcggcatc gggcgggcca
     2101 tcgccgagca gatggccgcc cacggcgcca aggtggtgat ctcgtcccgc aaggccggcc
     2161 cctgcgagga ggtggccgcg gtgatcaacg ggcgcgccgc cggccacgcc atcgccgtgc
     2221 cggccaacat ctcctccaag gacgaccttc agcggctgat ggacgagacc cgcaaggcct
     2281 tcggcaagat cgacatcctg gtctgtaacg ccgcgtcgaa cccgttctac ggcagccagc
     2341 tcgacatctc agacgacgcc ttcggcaaga tcctcaccaa caacatcgtg gccaacaact
     2401 ggatgatcgg catggtcgcc ccggagatga aagagcgcaa agacggcgcg atcatcatcg
     2461 tctcctcgat cggcggcctg cgcggctccg aggtgatcgg cgcttactgc atctccaagg
     2521 ccgccgacat gcagctcgcc cgcaacctcg ctcgcgagct ggggccccac aacatccggg
     2581 tcaactgcgt ggcgccgggc ctggtcaaga ccgacttcgc caaggcgctc tgggacacgc
     2641 ccgccggcga ggaacgcgcc agctccggca ccccgctacg gcgcctgggc gagcccgacg
     2701 acctggcggg cgcggcggtc tatcttgcca gccgcgccgg ggcctggacg acggggcaga
     2761 cgttcgtggt ggatggcgga agcacctgct gaggccggcg ctaccccttc accaccatct
     2821 ccagcccgcc gtcgaagggc agggtgagcg tggtgaggcc gttcgccggg tcgttcacga
     2881 aggcgaagaa ggccgcgtag ccgcgggccg actgaacggt gttgtcagcg atgacgacgc
     2941 cgcctgggcg caggtggggc gtgatcagct ccatcgcggg ccgggccatc tcggtccaga
     3001 tgtccatcag cacgaagtcc acgggcccct cgatcgcctt cagggtctgc ctgaggtcgc
     3061 cctcacgcag gtcgatgagg tcggtcaggc cggcctcggc gaaggtggct ctcgccgccg
     3121 ccgccttggc cggctcatgc tccgtgccga tcaccgtccc gccgccgttg gcccgcacgg
     3181 ccgccgccag atagagggtc gagaccccga acgacgtgcc gacctcgatc acgcgcgtcg
     3241 cccgcaggct gcggcacatc aggtggcaga actcggcctt gaccggctcc agcgccacca
     3301 gcttgtcggc catgaaggag gtcaggcggt cgtcaaaacc ttcccaactg aggtcgccct
     3361 tcttgatgcg ctcggcgaag taggcgttgg tctgcgcctc ctgggcgacg ctctgcgcct
     3421 gcagccggtc gatgatggcc tgcagcttcg gatcgccgag gacgctcatt gcggccactg
     3481 caccgactcg tactgcatgg ctccggccac attgccctcg gtgtcctgga agaagatcag
     3541 gtggccgacg gtctcgatgt ggaagggcgg catcaacacc ttgccgccgt tggcctcgat
     3601 ggcggcgatg gtcgcgtgga tgtcgtcgac gccgaagctg atctccatcc ccggcatctt
     3661 gagcccgccg atgtcgcgcc tgccctgcag cgcgcccatg tgtccgtcgc cggtggtgcg
     3721 ggtctggtag aagccgggcg gcccccaggg ggtgaaggtc cagccgaaga cctcctcgta
     3781 gaagcgcttg gcgcggggca cgtcgtcggc gttgatcgcg aagtggcgaa gggttgcggg
     3841 catggcgggg cctccttgaa ggccaagcta ggccttaccc gaggcggcgc gcttgcgcta
     3901 gtctgacgaa taatgtcgca accgcgccaa aatgtccgcg atcccgacgg ctttccggtc
     3961 cgtggcctgg ccgtgaccta ccgcgacggc cacgtgctcg accgccacac ccacccctgg
     4021 gcgcagctgg tctacgccgc cagcggggtg atgcggatcg ccaccccgac ggcgacctgg
     4081 ctgacgccgc cgacgcgcgc gatctgggtc ccagccggga ccgcccatga gatcgagatg
     4141 cgcggcactg tggccatgcg tacgctctat ctggcgc
//
LOCUS       DATAJL010000438        10197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93543,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000438 DATAJL010000000
VERSION     DATAJL010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 10197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10197
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93543"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..2277
                     /locus_tag="VHN39_08365"
     CDS             289..2277
                     /locus_tag="VHN39_08365"
                     /EC_number="1.11.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF015131.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HEX2816393.1"
                     /translation="MMVLWAMLLGSVAARAQNFTAPPSLKTVPVPKPAALMSFVKDKN
                     AAIYLGKALFWDMQVGSDGVQACASCHFHAGADSRTKNTVNPGQNANDTSFQLVPGPN
                     GTVAASSFPFHRLANRDDRLSTVLQDLNDVMGSQGVFDGEFLGVIKNQAVEASNPVAD
                     PIFHVGSHNTRRITGRNAPSVINAAFNYNNFWDGRANNVFNGVDPFGPSNLNARVFVG
                     DGAGTLTPVAVHLENSSLASQAVGPPGNDVEMSLTHRTFPDIGKKLLNLRPLGKQLVH
                     GSDSVLGTTARRSKRSPRPGLDTTYRKMIKAAFLDQYWNVTDTVVTIDSTGAHLGRRH
                     GRMAANQYSQMQANFSLFFGLAVQMYEQTLISDDSPYDRFQEGNTSALSRSAQDGLNL
                     FMTPADPGFAGGSCFNCHMGSEFTKASVSNVGAVIFGDKPEQIIERMDMNNGNGASYD
                     SGYYNIGVRPTEEDKGRGGGDPYGYPLSFTARALMIQNGTKLPFPNPPNFCADGITTP
                     CYISRIAVDGTFKTPSLRNVELTGPYFHNGGQATLMQVVDFYTRGGDFHEHNIANLDA
                     DIDLLDGMNDVAKQHIVDFLLSLTDERVRWEKGPFDHPELFVPNGSPGDYVSVLCGNS
                     SASTCNELIRLPPVGSSGRAAEGLPALGTFLNLDPHSH"
     gene            2322..4388
                     /locus_tag="VHN39_08370"
     CDS             2322..4388
                     /locus_tag="VHN39_08370"
                     /inference="COORDINATES: protein motif:HMM:NF016071.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing protein"
                     /protein_id="HEX2816394.1"
                     /translation="MNRIKLLFALGASVAVLANQACSNSAQPGERSRAPEENAQALTS
                     IPTLRIDAYPAVLPGAQFAVDVSFRDATGNLLNVAKPVTIALGKSIAGSTLTGTKTIT
                     PASGVAHFGDLALDKVGQGYTLVATSSGASAGTSSTINVTWSENDQFTAGTGQNTSPA
                     AAQPLSPAVPVVGSLADDVRYYRFHAATGQLLSVMSWANRMDPSNWDTSLRLRLLAAN
                     GTTEITRSGAPNRNSSGIDNGILALRIPADGDYFLGCDSDPGGFQSGQFAIMMTLTNL
                     GTVQTETEPWGATGQNDSPAKAQALSPGLLFGHFDTPASNASTSDFYKIAVTTPSRVR
                     VDLVAARNGAAYGDSLWDARLELQDASGTVLWANDDAYSTDPVIDYVITKAGTYYVRV
                     ARSENRSNTASSPYMLSYASTPYLPMVETARNGSPTTATPIAYGAEVSGTFTAAGDHF
                     FAFGGAAGDVVRLVAEGRDNLQPATLNLNPNAGADAVLLGTDGVTALSAGAGTGTGNE
                     NKFNIRQTILQANGTYFVRVRSQNTGKFGLRLELFAASAREVKPNNTPATATRIDTGW
                     VSGNLATAGDVDHFKVHAEAGQFVSASLLAAPGYGTGTPSADWGSALMANLEVHDAQG
                     NLLAATSADRLGNSNFAETDQRAEEMVEVAFRAPAAGDYDLAVSDADGQGGAAFFYAL
                     QLRKNQ"
     gene            4385..4873
                     /locus_tag="VHN39_08375"
     CDS             4385..4873
                     /locus_tag="VHN39_08375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816395.1"
                     /translation="MSFLSLRPTVALCGLALVLAAVPRASAAAEPVQARRISLAPLFD
                     THTRFKKKKTVKLRFRVKDSSSGAPLALDEVSFSLRHGAEAALVQLPARALHDGVFEV
                     PFTPAAPGQYWVIAAVRGEPAAAIAPIRLGVIGIADGMIEVPEKGDVDVKRSIKMSPK
                     GR"
     gene            4900..5511
                     /locus_tag="VHN39_08380"
     CDS             4900..5511
                     /locus_tag="VHN39_08380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816396.1"
                     /translation="MQRRAGRIGLRTAVLAGLALLCLWAIYALSGAPVATQSRPVKTQ
                     AERPAPRAPEILHEDKGGIQILERVQVQALPAIEVQPLFEAGLRLTFDETTKLRFVAR
                     DRASGKPESSAVMTAALLHGTNPPVALKVEEVDDGVFEVPVTPHGPGRFDVVLSANGV
                     QVGSQRVGVVGTAGGAPGVDDFLDFTGDMRAGRSRPGGRGRTR"
     gene            5852..7804
                     /locus_tag="VHN39_08385"
     CDS             5852..7804
                     /locus_tag="VHN39_08385"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX2816397.1"
                     /translation="MFGIQKFTQPMPRFDVLERKDPSTLIPAAAEQSNQTQQALDPAL
                     GTGTGPIEGRPPGPLWAHQGWSDFPPKVAVEVNMQGATVNNIYNPGVSQAHNSGIDPT
                     VPLHPRFHPGLPDQDPLKMWTFNGTIPPKLVIGRYGEPILFREHNLLPADKTQNGGFG
                     IHTISTHEHNGHHGAENDGFTGAFFFPGQFYDYHWPIVLAGFRSINTTATDPKAGSPD
                     DALGIKKIAGDWHETMSTHWFHDHMFSFTSQNVYKGMAAMFNIYSAIDRGNEALIDGV
                     NLRLPSGSAKGWANLDYDVNLVLADKAWDANGQLWFNPFDTDGFLGDRMTVNLADNPY
                     FVVEARKYRFRILNGAVSRFFKLALSDGSPMIQIANDGNLLPSPVVQTQLDEQGIAER
                     YDIVIDFSRYHAGDKVWMVNLCEHHNGKMPAQDRTLADALAGKSVDPAVGKFLEFRVV
                     AATGPDLSQVPATLIPNPTFASGVTKRRQFNFGSDAVAPISSATSFPTGPWGVKTDMG
                     TDTTLTADYGRISAAPKQGTREMWTLVNNGAGWDHPVHIHFEEGQIQLRDGLSSNVPA
                     WEKGRKDVYRLRPGGSVTLTMQFRDWGGTFMEHCHNTVHEDNAMLVRWDIDANGASIL
                     NPFPSPIPTPNGCTFVPPDEIVPTAY"
     gene            7859..8314
                     /locus_tag="VHN39_08390"
     CDS             7859..8314
                     /locus_tag="VHN39_08390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816398.1"
                     /translation="MNNRLFLSLLAALLFAVPAARADSTAFSSFTVPVSGTLLGGNEK
                     ISCKGPVRLSAMAQKDPITPHANVVITVDTTGLACQGLSSKMSYLNTGHSILTRILTP
                     NDRLEASIAVYPKHERGHLEARSAVVTMQLSYNLASSALVGATATLANQ"
     gene            8381..9292
                     /locus_tag="VHN39_08395"
     CDS             8381..9292
                     /locus_tag="VHN39_08395"
                     /inference="COORDINATES: protein motif:HMM:NF014667.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEX2816399.1"
                     /translation="MSAAALLLPRGAAAGNEWGADYFPNVPLTTQDGKVVHFYDDLLK
                     GKAVAINLMYTHCSGSCPLETARMVQVQKLLGDRVGKDVFFYSITIQPDRDPPEVLKA
                     YSERFHVQPGWLFLTGKMDDIKLIALKLGLSSLTDAGNKDGHQPTLMVGNEATGEWMR
                     NSAVDNPRFLATSMMNFLDGFKKAKPLANNYADLRFKNVGRGEYLFKSRCSACHTIGR
                     GDGVGPDLAGLATRRDRAWASRYIAEPDKMLAEGDRVATALFAKYKNVSMPNLNLDPD
                     DIAALLSLIEKTAAASSQRGSVTAAVR"
     gene            complement(9376..>10197)
                     /locus_tag="VHN39_08400"
     CDS             complement(9376..>10197)
                     /locus_tag="VHN39_08400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816400.1"
                     /translation="AGTAITNYAGTIVFSSSDPAAVLPASVTLNGSEGGHATVNVTFK
                     TLGLQTFTAKDSADATKIGTALQLVHGLVYSDPALGGMVRLVLNSAASTTSTVQLDLV
                     SNTSLFPLGLSDPLSSGRVLPSTVRNGVFAAGMNLPLDSSKIEPDPQLLVLPAPSNAI
                     LGLGATPQAVGAALTNGVLYSGISQKRFDATLNCTSCTNDHQRGDVQVRPFPAATSLY
                     YSVRVKLTPGAVPGVVFDGQALASNTKFRAAVRDRSGTDVFAGAADFAIGRLEVK"
BASE COUNT         1850 a         3682 c         3107 g         1558 t
ORIGIN      
        1 cccccggaga actcgccgct cttcatcacc gtgcactcga gtcgcggcgc tgaggcggtc
       61 aacgttccgg tgctcatccg ctaagaaccg cagcggccgg cgcgaggcgg gttgtcgcag
      121 acccgcccca tgggcgacgg gacgcaagtc ccgcgcctta cgccccggcc gtccgcggaa
      181 ttcgacaccg aatccaaacc tattcgaatc cagggaccaa tgatgactcc taaccaaacc
      241 aagccatacg agaagcgggc cctcccgggc cggcgcgggg cgcaggcgat gatggtgctc
      301 tgggcgatgc tgctcggcag cgtcgcagcc cgcgcgcaga acttcaccgc tccgccttcg
      361 ctcaagaccg tgccggtccc caagccggcc gcgttgatgt ccttcgtcaa ggacaagaac
      421 gccgccatct acctcggcaa ggcgctgttc tgggacatgc aggtgggcag cgacggcgtg
      481 caggcctgcg ccagctgcca cttccacgcc ggcgccgact cccgcaccaa gaacacggtg
      541 aaccccggac agaacgcgaa cgacacctcc ttccaactcg tcccgggtcc caacggcacg
      601 gtggcggcgt cgagctttcc ctttcaccgc ctcgccaacc gcgacgatcg cctctcgacc
      661 gtgctccagg atctgaatga cgtgatgggc tcgcaaggcg tcttcgacgg cgagttcctc
      721 ggcgtcatca agaaccaggc cgtagaggcc agcaacccgg tggccgatcc gatcttccac
      781 gtcggaagcc acaacacccg ccgcatcacc ggccgcaacg cgcccagcgt catcaacgcc
      841 gccttcaact acaacaactt ctgggacggc cgcgcgaaca acgtcttcaa cggcgtcgac
      901 cccttcggcc cctccaacct gaacgcccgg gtcttcgtag gcgacggggc tggcacgctg
      961 acgccggtgg ccgtgcacct ggagaactcc agcctggcgt cgcaggccgt gggtccgccg
     1021 ggcaacgacg tcgagatgtc gctcacgcac cgcaccttcc cggacatcgg caagaagctg
     1081 ctcaacttgc ggccgctggg aaagcagctg gtgcacggct ccgacagcgt actgggaacg
     1141 accgcgcgca ggtcgaagcg atcgccaagg cccggcctgg acacgaccta ccgcaagatg
     1201 atcaaggccg ccttcctgga ccagtactgg aacgtcaccg acacggtggt caccatcgac
     1261 agcaccgggg cgcacctggg ccggaggcac gggcgcatgg ccgcgaacca gtactcgcag
     1321 atgcaagcga acttctcgct cttcttcggc ctcgccgtgc agatgtacga gcagacgctg
     1381 atctccgacg actcgcccta cgaccggttc caggagggca acacctcggc gctgagccgc
     1441 tccgcgcagg acgggttgaa cctcttcatg acccccgccg atcccgggtt cgccggcgga
     1501 agctgcttca actgccacat gggttcggag ttcaccaagg ccagcgtcag caacgtgggc
     1561 gcggtcatct tcggcgacaa gcccgagcag atcatcgagc gcatggacat gaacaacggc
     1621 aacggcgcct cgtacgactc cggctattac aacatcggcg tccgccccac cgaggaggac
     1681 aagggccgcg gcggcggcga tccctacggg tacccgctct cgttcactgc ccgcgccttg
     1741 atgatccaga acggcaccaa gctgccgttc ccgaacccgc cgaacttctg cgccgacggc
     1801 atcaccaccc cctgctacat ctcccgcatc gcggtcgacg gaaccttcaa gacgccctcg
     1861 ctgcgcaacg tggaattgac cggcccctac ttccacaacg gcggccaggc gacgctgatg
     1921 caggtggtcg acttctatac ccgcggcggc gacttccatg agcacaacat cgccaacctg
     1981 gacgcggaca tcgacctcct cgatggcatg aacgacgtcg ccaagcagca catcgtcgac
     2041 ttcctgctct cgctcaccga cgagcgcgtt cgctgggaga aggggccctt cgatcacccc
     2101 gagctgttcg tgccgaacgg gtcgcccgga gactacgtct cggtgctctg cggcaactcc
     2161 agcgccagca cctgcaacga gctgatccgg ctcccgcccg tcgggagcag cggccgcgcc
     2221 gccgaaggcc tgcccgcgct gggaacgttc ctcaacctcg acccgcactc gcactgatgc
     2281 cgggaccaat cgtcatgaag cccacgcgtg aggagtcttt cgtgaaccga atcaagctgc
     2341 tgttcgcact cggagccagc gtcgcggtgc tcgccaacca ggcgtgcagc aattccgcac
     2401 agcctggtga gcgatcgcgc gcgccggaag aaaatgccca ggccctgacg tcgattccga
     2461 cgctgcggat cgacgcctat cccgctgtcc ttccgggcgc gcagttcgcg gtcgacgtct
     2521 cctttcggga cgcgaccggg aacctgctca acgtcgccaa gcccgtcacc atcgccttgg
     2581 gcaagagcat cgccgggtcg acgctcaccg ggacgaagac gatcaccccg gcgagcggcg
     2641 tcgcgcactt cggcgatctc gcgctcgaca aggtgggcca gggctacacg ctcgtcgcca
     2701 cctcgagcgg cgcgagcgcg gggacctcct ccaccatcaa cgtgacctgg tcggagaacg
     2761 atcagttcac ggcggggacg ggccagaaca cttcgcccgc cgcggcgcag ccgttgagcc
     2821 ccgccgtgcc cgtcgtcgga agccttgccg acgacgtccg ctactaccgc ttccacgcgg
     2881 ccaccgggca gctcctctcg gtcatgagct gggcgaaccg gatggacccg agcaactggg
     2941 acacctcgct ccggctgcgc ctgctcgccg cgaacggcac taccgagatc acccgcagcg
     3001 gcgcgcccaa ccggaactcc agcggcatcg acaacggcat cctggcgctg cgcattccag
     3061 ccgacggaga ctatttcctc ggctgcgact cggatccggg cggatttcaa tccgggcagt
     3121 tcgcgatcat gatgacgctg acgaatctcg gcacggtgca gaccgaaacc gagccctggg
     3181 gcgcgaccgg ccagaatgac tccccggcca aggcgcaggc gctgtcgccg gggctgctct
     3241 tcggccactt cgacacgccg gcatcgaacg ccagcacctc ggacttctac aagatcgcgg
     3301 tgacgacccc ctcgcgggtc cgagtcgacc tggtcgcggc ccgcaacggc gcagcctacg
     3361 gagacagtct ctgggacgcc cgcctcgagc tgcaggatgc ctcgggcacg gtcctctggg
     3421 cgaacgacga cgcgtactcg accgacccgg tcatcgacta cgtcatcacc aaggccggga
     3481 cctactacgt gcgcgtcgcc cggtcggaga accggtccaa caccgccagc agcccctata
     3541 tgctgtccta cgcctcgacg ccctacctgc cgatggtgga gaccgcccgc aacggttcgc
     3601 ccactaccgc gacgccgatc gcctacggcg ctgaagtcag cggaaccttt accgcggccg
     3661 gcgaccattt cttcgccttc ggcggcgcgg ccggcgatgt cgtccggctg gtggccgagg
     3721 gccgcgacaa cctccagccc gccacgctca acctgaaccc caacgcaggc gcggatgcgg
     3781 tcctcctcgg caccgatggc gtcactgctc tctccgccgg cgccgggacc ggcaccggca
     3841 acgagaacaa gttcaacatc cggcagacca tcctgcaggc gaacggcacc tacttcgtgc
     3901 gcgtccggag ccagaacacg ggcaagttcg gattgcgcct cgaactgttt gctgcctcgg
     3961 cgcgcgaggt caagcccaac aacaccccgg ccaccgcaac ccgcatcgac accggctggg
     4021 tctcgggcaa cctcgccacc gccggagacg tcgaccactt caaggtccac gccgaagcgg
     4081 gtcagttcgt cagcgcgtcg ctgctggcgg cgcctggcta cgggaccggc acgccgtccg
     4141 cggattgggg atcggcgttg atggccaacc tcgaggtaca cgacgcccag ggcaacctct
     4201 tggcggccac ctcggcagac cgtctgggca attcgaactt tgccgaaacg gatcagcggg
     4261 cggaggaaat ggtggaagtc gccttccggg cgccggccgc gggcgactat gacctcgccg
     4321 tctccgatgc ggatggccag ggcggagcgg ccttcttcta cgcgctgcag ctgagaaaga
     4381 accaatgagc ttcctctcct tgcggcccac cgtcgcgctc tgcgggctcg cgctcgtgct
     4441 ggctgccgtg ccgcgggcat ccgcggccgc cgagccagtc caggcgagaa ggatctcgct
     4501 ggcgccgctc ttcgacacgc acacgcgctt caagaagaag aagacggtca agctccgctt
     4561 ccgcgtcaag gacagctcgt cgggcgcacc tctggccctg gacgaggtct cgttctcgct
     4621 ccgccacggc gcggaagccg cgctcgtgca gcttcccgcc cgcgcgctgc acgacggcgt
     4681 cttcgaagtg ccgttcaccc ccgcggcgcc cgggcagtac tgggtcatcg cggccgtccg
     4741 cggtgagccg gcggccgcga ttgcgcccat ccgcctgggc gtcatcggta tcgccgatgg
     4801 aatgatcgag gttccggaaa agggtgacgt agacgtcaaa cggagcatca agatgagccc
     4861 caagggccga tgaaagtgca tcgctatccc gcgaggcccg tgcagcgacg cgcgggcagg
     4921 atcggccttc gcaccgccgt gctcgccggc ttggccttgc tctgcctctg ggcgatctac
     4981 gcgctctcgg gcgcgccggt ggccacccaa tcgcggcccg tcaagaccca ggccgagcgc
     5041 ccggctccgc gcgcaccgga gatccttcac gaggacaaag gaggcatcca gatcctcgaa
     5101 cgggtgcagg tacaggccct gccggcgatc gaggtgcagc cgctgttcga ggcgggcttg
     5161 cggctcacct tcgacgagac cacgaagctc cggttcgtgg cccgcgaccg ggcctcgggc
     5221 aagcccgagt ccagcgcggt gatgaccgcg gccttgcttc acggcaccaa tccgccggtc
     5281 gcgctgaagg tcgaagaagt cgacgacggc gtcttcgaag tgccggtcac gccgcacggg
     5341 cccggccggt tcgacgtggt gctgagcgcc aacggcgtgc aggtcggctc gcagcgggtg
     5401 ggcgtggtcg ggaccgcagg cggcgcgccc ggcgtggacg acttcctcga cttcaccggc
     5461 gacatgcgcg caggccgctc gcgaccgggc gggcgcggcc ggaccaggtg agctcgcgac
     5521 cgcgggccag gcattttcgt tgaatcggta atcggtaatc gcagtgcaga ccaaactgaa
     5581 cgcctcggtt gccgccggca atccagggga ggcgttccat tgagcgggac cgtagaaacg
     5641 gcccgaaagc atggggagca acttgaaggc aaacatggat cgtaaagaaa cccagggttc
     5701 gaagaagcgg gggatcaagt ccctcctctc cgcgggcggc gcgctggtca tcattggcgc
     5761 aatcgcttca ttcgctcccg gcgctcgcgc tagcggtggc ggcggtggcg gcgcccccaa
     5821 cattccgacc ggcgctgcgg ggccgagtcc catgttcggg atccagaagt tcacccagcc
     5881 gatgccgcgc ttcgacgtgc tcgagcgcaa ggacccctcg acgctgatcc cggcggcggc
     5941 ggagcagtcg aaccagacgc agcaggcctt ggatccggcg ctcggcactg gaaccggccc
     6001 catcgaaggc cggccgccgg ggcccctctg ggcccaccag ggctggtcgg atttcccgcc
     6061 caaggtcgcc gtcgaggtca acatgcaggg cgcgaccgtc aacaacatct acaacccggg
     6121 cgtctcgcag gcacacaact ccggcatcga cccgaccgtt ccgctgcacc ccaggttcca
     6181 ccccggcctg cctgatcaag acccgctcaa gatgtggacc ttcaacggca ccattccacc
     6241 caagctggtc atcggccgct acggcgagcc gatcctcttc cgcgagcaca acctgctgcc
     6301 ggcggacaag acccagaacg gcggcttcgg catccacacc atctccaccc acgagcacaa
     6361 cggccaccac ggcgcggaga acgacggctt caccggcgcg ttcttcttcc ccggccagtt
     6421 ctacgactac cactggccca tcgtgctggc cggcttccgc agcatcaaca ccaccgccac
     6481 cgatcccaag gccggctcac ccgacgacgc tctcggcatc aagaagatcg ccggcgactg
     6541 gcacgagacc atgagcacgc actggttcca cgaccacatg ttcagcttca cctcgcagaa
     6601 cgtctacaag ggcatggccg cgatgttcaa catctacagc gccatcgatc gcggcaacga
     6661 agcgctcatc gacggcgtca acctgcgctt gccgagcggc agcgccaagg gctgggcgaa
     6721 cctcgactac gacgtgaacc tcgtcctcgc cgacaaggcc tgggacgcga acggccagct
     6781 ctggttcaat cccttcgaca ccgacggctt cctcggcgac cgcatgaccg tgaacctggc
     6841 cgacaatccc tacttcgtgg tcgaggcgcg caagtaccgc ttccgcatcc tcaacggcgc
     6901 cgtctcgcgc ttcttcaagc tcgccttgag cgacggctcg ccgatgatcc agatcgccaa
     6961 cgacggcaac ctcctcccct cgccggtcgt gcagacccag ctcgatgagc agggaatcgc
     7021 cgagcgctac gacatcgtca tcgacttctc ccgctaccac gcgggcgaca aggtctggat
     7081 ggtgaacctc tgcgagcacc acaacggcaa gatgcccgcg caggatcgca cgctcgctga
     7141 tgccctcgct ggaaagtctg tggacccggc ggtcggcaag ttcctcgaat tccgcgtcgt
     7201 cgcggcgacc ggaccggacc tgagccaggt gccggcgacc ctcatcccca acccgacctt
     7261 cgccagcggc gtcaccaagc ggcgtcagtt caacttcggc tccgatgccg tggcgcccat
     7321 cagcagcgcc acgtcgttcc ccaccggccc ttggggcgtc aagaccgaca tgggcaccga
     7381 caccaccctc accgccgact atggccgcat ctccgccgcg cccaagcagg gcacccgcga
     7441 gatgtggacc ttggtgaaca acggcgcggg ctgggatcac ccggtccaca tccacttcga
     7501 ggaggggcag atccagctgc gcgacggcct cagcagcaac gtgcccgcct gggagaaggg
     7561 ccgcaaggac gtctatcgct tgcgtccggg cggcagcgtc accctcacca tgcagttccg
     7621 cgactggggc ggcaccttca tggagcactg ccacaacacg gtccacgagg acaacgccat
     7681 gctcgtgcgc tgggacatcg acgccaacgg cgcctcgatc ctcaatccgt tcccctcgcc
     7741 gatccccaca cccaacggtt gcaccttcgt cccccccgac gaaatcgtgc cgaccgccta
     7801 ctaggaacct ggccaaacca tgacgaacaa acctctctcc acgaaaccta gggcagccat
     7861 gaacaaccga ctgtttctct ctctcctcgc agcccttctc ttcgcagtcc ccgccgcgcg
     7921 cgcggactcc accgccttct ccagcttcac cgttcccgtc tccggaaccc tgctcggggg
     7981 aaacgagaag atctcctgca agggcccggt gcggctctcg gcgatggcgc agaaggatcc
     8041 gatcacgccg cacgcgaacg tcgtcatcac cgtcgatacc acgggcctcg cctgtcaggg
     8101 gctctccagc aagatgtcgt atctcaacac cggccactcc atcctgacgc ggatcctgac
     8161 ccccaacgat cgcctggagg cctcgattgc ggtctatccg aagcatgagc ggggacacct
     8221 cgaggcgcgc tccgcggtgg tgacgatgca gctctcctac aacctcgcga gctcggcgct
     8281 cgtcggggcc accgctactc tcgcaaacca gtagttagcg gacttggggg attcaatgca
     8341 ggcaaggctt cgatttcgga tcccagcggc tgcgctcttg gtgagcgcag ccgccctgct
     8401 cctcccgcgc ggcgccgctg ccggcaatga atggggtgcc gactactttc ccaacgttcc
     8461 tttgaccacg caggatggca aggtcgtgca cttctacgac gacctgctca agggcaaggc
     8521 ggtggccatc aacctcatgt acacgcactg cagcggcagc tgcccgctgg agacggcgcg
     8581 catggtccag gtgcagaagc tgctcggcga tcgggtggga aaggacgtgt tcttctactc
     8641 gatcaccatt caacccgacc gcgatccgcc cgaggtcctc aaggcataca gcgagcgctt
     8701 tcacgtccag cctggctggc tcttcctcac cggcaagatg gacgacatca agctgattgc
     8761 gctcaagctg gggctgtcct cgttgaccga cgcaggcaac aaggacgggc accaacccac
     8821 gctcatggtc ggcaacgagg cgaccggaga gtggatgcgc aactccgccg tggacaatcc
     8881 acgcttcctc gccacctcca tgatgaactt cctcgatggc ttcaagaagg cgaagccgct
     8941 cgccaacaac tacgccgacc tcaggttcaa gaacgtaggc aggggcgagt acctcttcaa
     9001 gagccgctgc tcggcttgcc acaccatcgg gcgcggagat ggcgtcgggc ccgacctcgc
     9061 cggcctggcg acgcggcgcg accgcgcctg ggcgagccgc tacatcgccg agccagacaa
     9121 gatgttggcc gagggcgacc gcgtcgcaac cgcgctgttc gcgaaataca agaacgtgag
     9181 catgccgaac ctgaatctcg atccagatga catcgcggca ttgctctcgc tcatcgagaa
     9241 gaccgccgcc gcttcctcgc aacgaggcag cgtcactgca gccgtcagat gatggggtgc
     9301 tgcggcccgg ggggataacc ccacgccccc gggccgtcgg cattcttcaa agcgtacttc
     9361 cgcactgcgc tccctctact tcacctccag ccggccgatc gcgaagtccg cggcgccggc
     9421 gaagacgtcc gtacccgaac ggtcgcgcac cgccgcccgg aacttcgtgt tgctggcgag
     9481 cgcctgccca tcgaacacca ctccggggac cgctcccggc gtcagcttga cccgcaccga
     9541 gtagtagagg gaggtcgccg cggggaaagg ccgcacctgc acgtcgcccc gctgatgatc
     9601 gttggtgcat gaggtgcagt tcagcgtcgc atcgaaccgc ttctggctga tgccgctgta
     9661 gagcacgccg ttcgtcaacg ccgcgcccac cgcctgcggc gtcgctccca atcccaggat
     9721 ggcgttgctg ggcgcaggca ggaccaggag ctgcggatct ggttcgatct tgctggaatc
     9781 cagcggcagg ttcatccccg cggcgaagac gccgttgcgc acggtcgaag gaagaacgcg
     9841 gcccgagctc aatggatcgg agagtcccag cgggaagagc gaagtgttgg acacgaggtc
     9901 gagctgcacc gtgctcgtgg tcgaggcagc gctgttcaag accagccgta ccattccacc
     9961 caacgccgga tccgaataga cgagcccatg aacgagctgg agcgcagttc cgatcttcgt
    10021 cgcatcggcg ctgtccttcg cggtgaaggt ctgcagcccc agggttttga aggtcacgtt
    10081 caccgtcgcg tggcctcctt cgctcccgtt aagcgtcacg ctggcaggca gcacggctgc
    10141 cgggtcggag ctcgagaaga cgatggtgcc ggcgtagttg gtgatggccg tgccggc
//
LOCUS       DATAJL010000439         1554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33723,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000439 DATAJL010000000
VERSION     DATAJL010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33723"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..537)
                     /locus_tag="VHN39_08405"
     CDS             complement(<1..537)
                     /locus_tag="VHN39_08405"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517923.1"
                     /note="involved in translesion DNA polymerization with
                     beta clamp of polymerase III; belongs to Y family of
                     polymerases; does not contain proofreading function;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEX2816401.1"
                     /translation="MKAFCRDCFWQGEQAVRRCPNCASPRIVAHEDLASLAIAHMDCD
                     AFYASVEKRDRPELRDVPVIVGGGKRGVVTTCCYIARISGVRSAMPMYKALKLCPEAV
                     VIKPDFSKYQFESRRILGMAGELTPLIQNLSLDEAWMDLSGTERLHKAPPAITLARLQ
                     TRIEAETGLTVSIGLSANK"
     gene            complement(534..1439)
                     /locus_tag="VHN39_08410"
     CDS             complement(534..1439)
                     /locus_tag="VHN39_08410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEX2816402.1"
                     /translation="MIRIGVDFGGTKIEAAALDAQGRFQARVRAPSPGSYEASLEVVR
                     DLIAEAECGAGIPPAKTGGASIGVGIPGSPSPASGLIRNANTTHLNEKPLQADLEQVL
                     GRPIRLANDANCFALSEASDGAGADSDVVFGVIIGTGCGAGVTVGGRVLAGHNGVAGE
                     WGHTPLPWPRPEELPGPGCFCGRLNCLENWISGPGFARAHGTGQDAEAIVKAAAAGER
                     AAVASLDAYVDRLARGLAAVADILDPDVIVLGGGMSNVGLLYDRLPAAIGSYVFSDVF
                     TTPVRKALHGDSSGVRGAAWLWPLP"
BASE COUNT          238 a          529 c          541 g          246 t
ORIGIN      
        1 cttgttggcc gaaagcccga tggagaccgt cagcccggtc tccgcctcga tgcgggtctg
       61 cagcctggcg agcgtgatgg ccggcggggc tttgtgcagt cgctcggtgc ccgagagatc
      121 catccaggcc tcgtccagcg acaggttctg gatcagcggc gtcagctcgc cagccatgcc
      181 caggatgcgc ctgctctcga actgatactt ggagaagtcc ggtttgatga ccacggcctc
      241 ggggcagagc ttcagcgcct tgtacatggg catcgccgag cgaaccccgg agatgcgggc
      301 gatgtagcag caggtggtca ccaccccgcg ttttccgccg cctacgatga ctggcacgtc
      361 gcgcagctcc ggccgatcgc gcttctccac cgaggcgtag aaggcgtcgc agtccatgtg
      421 agcgatggcg aggctggcca gatcctcgtg cgccacgatc cgcggactgg cgcagttggg
      481 gcagcggcgc acggcctgct caccctgcca gaagcagtcc cggcagaagg ctttcatggg
      541 agcggccaga gccaggccgc gccgcgcacg cctgaggagt ctccgtgcag ggctttgcgg
      601 accggcgtcg tgaagacgtc ggagaagacg tagctgccga tggccgcggg caggcggtcg
      661 tagagcaggc cgacgttgga catgccgccg cccagcacga tcacgtcggg gtcgaggatg
      721 tcggccactg ccgccaggcc tcgggccagc cggtcgacat aggcatccag agaggcgacg
      781 gccgcgcgtt cgccggccgc ggcggccttc acgatcgcct cggcatcctg gccggttccg
      841 tgggcgcggg cgaagccagg gccggagatc cagttctcca ggcagttcag ccgtccgcag
      901 aagcagccgg gacccggcag ctcctctggt cgcggccaag gcagcggcgt gtgcccccat
      961 tcgccggcaa cgccgttgtg gcccgccagc acccggccgc ccaccgtcac gccggccccg
     1021 cagccggtgc cgatgatcac cccgaagacc acgtcgctgt ccgcgcccgc gccgtcgctg
     1081 gcctccgaca aggcgaagca gttggcgtcg ttggcgaggc ggatgggtcg gcccaggacc
     1141 tgctccaggt cggcctgcag aggcttttcg ttcaggtgcg tggtgttggc gttgcggatc
     1201 aggcctgagg ccggggaggg cgagccgggg atgccgacgc cgatgctcgc gccgccagtc
     1261 tttgcagggg ggatcccggc cccacactcg gcttcagcga tcagatcgcg tacgacctcg
     1321 agactggcct catagctccc tggcgacggc gcgcgcaccc gggcctggaa acggccctgc
     1381 gcatccagcg ccgccgcctc gatcttggtg ccgccgaagt ccacgccgat ccggatcata
     1441 gccaggtgat ataccggatt tgttctgtcg tgctgaggag ttgggctgat cgccgaccgt
     1501 tgatgggcct gacagccgtc ctcgccgtaa accaaagttt catcaggccc ggac
//
LOCUS       DATAJL010000440         3704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_7789,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000440 DATAJL010000000
VERSION     DATAJL010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3704
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7789"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VHN39_08415"
     CDS             complement(<1..299)
                     /locus_tag="VHN39_08415"
                     /inference="COORDINATES: protein motif:HMM:NF016873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HEX2816403.1"
                     /translation="MTLLAPDERMAAVALNAGAASPFLLLGDHAGREIPASLGDLGLP
                     EVERTRHIAWDIGVAGLGLLLSKALDAPFLRQRFSRLVIDCNRDPARADAIPEIS"
     gene            335..1528
                     /locus_tag="VHN39_08420"
     CDS             335..1528
                     /locus_tag="VHN39_08420"
                     /inference="COORDINATES: protein motif:HMM:NF016873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HEX2816404.1"
                     /translation="MTTVSIRHLTTYRYRNSVALGEHRMMLRPLESYDQRLISAELSI
                     TPEPSVLRNVHDVFGNCVSIARFAGRTDRLAVESRMVLEHTPQLVEFDGEYWGQTIPF
                     AYSPDDVPDLARSMERQHADPDGELEAWARRFVKRGGPTSLRSLLSDMTHAIHDGFAY
                     GTRLSGAPQAPLETLSLKTGSCRDFAMLMIEAVRSLGLLLSKALDAPFLRQRFSRLVI
                     DCNRDPARADAIPEISDGAQNPGNRALSSAARQAPVAEVARPYHAAIAAELDARASRG
                     LPTTLISLHSFTPRMDGFDRPWRFGVLHAENSPYSRAVLARLRGELGEALVGDNQPYR
                     MDEVDFTIPHHAGSRGLDYLELEVRQDLLADASAQAEIAAIVARILPLALDDARAQDI
                     AKHGA"
     gene            1552..1971
                     /locus_tag="VHN39_08425"
     CDS             1552..1971
                     /locus_tag="VHN39_08425"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816405.1"
                     /translation="MSETASAPATATAPSARFGFMKFVVRDLDAMASFYERAFGLVVS
                     QTIDLPDIMELVLRRPGEETGFSLILYWNKDGRDVAVGTGHGPLGLFVRDVDAAYAHA
                     VSQGATPHHEPWDTEAMRVGFVLDPEGRELELISMRR"
     gene            2038..2730
                     /locus_tag="VHN39_08430"
     CDS             2038..2730
                     /locus_tag="VHN39_08430"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEX2816406.1"
                     /translation="MFILPKLAYGYAALEPTLSADTMHTHHDKHHKAYVEKTNELAGK
                     AGLAGRSLEEVVREAQRKGDAKLFHNAAQAWNHAFFWQSMTARTEAPSPALKSAIAKA
                     FGGVDAFKDAFIEEGFNHFGSGWVWLVTGSEGLKVISTHDADDTLIKDGLFPLLVCDL
                     WEHTYYLDYKNDRKAFLTRWLDGVANWAFAERQLAASDGQGEGFRYPASAANDDPAER
                     REAPANGDRPPA"
     gene            complement(2737..3411)
                     /locus_tag="VHN39_08435"
     CDS             complement(2737..3411)
                     /locus_tag="VHN39_08435"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816407.1"
                     /translation="MRRLATLAAAATALLLASGAARANTITLNETVDLTAPQSPTGSF
                     FGWRDFTDTGGAFSPDFSFDLSAGDTLDYTADFLGNQTVTLVNPSLIWLLSSATDGGA
                     TGVNGTGSLDLLDAVGNVLYSSTVKTDDEGSVHFGQFFDPSDFSALPTTITIGGLHYV
                     GTLNSYDDPSITVRTYADPQVLFSVDSATVSTGVPEPLTWALMVAGFGLAGAVLRRRR
                     AQPALT"
     gene            complement(3484..>3704)
                     /locus_tag="VHN39_08440"
     CDS             complement(3484..>3704)
                     /locus_tag="VHN39_08440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2816408.1"
                     /translation="KLVIAALHDLTLAARYSTHLMALKDGRLAAFGQTPAVLTPQLLR
                     TVFEVEARITGVGQTTLVDYQGAQIDTV"
BASE COUNT          629 a         1297 c         1222 g          556 t
ORIGIN      
        1 tcgctgatct cggggatggc gtcggcccgc gcggggtcgc ggttgcagtc gatgaccagg
       61 cgggagaacc gctggcgcag gaagggcgca tccagagcct tggagagcag gaggcccagg
      121 cccgcgacgc cgatgtccca ggcgatatgg cgtgtacgtt cgacctccgg caggccgaga
      181 tcgcccagcg aggccgggat ctcacggccc gcatggtcgc ccagaagcag aaaaggtgag
      241 gcggcgcccg catttagcgc aaccgccgcc atgcgctcat cgggcgcaag cagcgtcatg
      301 gacctgttaa cggaatcgcc cgcaccgttc accaatgaca acagtctcca ttcgccacct
      361 gaccacctac cgctaccgta actcggtggc gttgggcgag catcggatga tgctgcggcc
      421 cctggaaagc tacgaccagc ggctgatctc ggcggaactg tcgatcacgc ctgagccgtc
      481 ggtcttacgc aacgtgcacg acgtgttcgg caactgcgtc tccatcgccc gcttcgctgg
      541 gcgcacggac cggctggcgg tggaaagccg gatggttctg gagcatacgc ctcagttggt
      601 ggaatttgac ggcgagtact ggggccagac catacccttc gcctacagcc ccgacgatgt
      661 gccggacctg gcgcgctcca tggagcggca gcacgccgat cctgacggtg agctggaagc
      721 ctgggcgcgc cggttcgtga agcgcggcgg ccctaccagc ctgcgcagtc tgctcagcga
      781 catgacccac gccattcatg acggcttcgc ctacggaacg cgcctgtcgg gcgccccgca
      841 ggcgccgctg gagaccctct ccttgaagac cgggagctgc cgcgacttcg cgatgctgat
      901 gatcgaggct gtgcgcagcc tgggcctctt gctctccaag gctctggatg cgcccttcct
      961 gcgccagcgg ttctcccgcc tggtcatcga ctgcaaccgc gaccccgcgc gggccgacgc
     1021 catccccgag atcagcgatg gcgcacagaa ccccggcaac cgcgccctct cgtccgccgc
     1081 ccgccaggcc cccgtggccg aggtggcgcg gccctaccac gccgccatcg ccgcggagct
     1141 cgacgcgcgt gcgtcgcgcg gccttcccac caccttgatc tcgcttcact ccttcacgcc
     1201 ccgcatggat ggcttcgacc ggccctggcg gttcggggtg ctgcacgccg agaacagccc
     1261 ctattcccgc gcggtcctgg cccgcctgcg cggcgaattg ggcgaagccc tggttggcga
     1321 caaccagccc taccggatgg acgaggtcga cttcaccatc ccccaccacg cgggctcgcg
     1381 cggcctcgat tacctggagc tggaagtccg ccaggacctc ctggccgacg cctcggccca
     1441 ggccgagatc gccgccatcg tcgcccgcat cctgcctctg gcgctggacg acgcgcgcgc
     1501 gcaggatatt gcgaagcacg gggcctgaga cccggccgga ggagacctga gatgagcgaa
     1561 accgccagcg cgcccgccac ggccaccgcg ccgtccgccc gcttcggctt catgaagttc
     1621 gtggtccgcg acctcgacgc catggccagc ttctacgagc gcgccttcgg cctggtggtc
     1681 tcccagacca tcgacctgcc ggacatcatg gagctggtcc tgcgccgccc gggcgaggag
     1741 accggcttca gcctgatcct ctactggaac aaggacggcc gcgacgtcgc cgtcggaacc
     1801 ggccacggcc cgctcggcct cttcgtccgt gacgtggacg ccgcctacgc ccacgccgtc
     1861 agccagggcg ccacgccgca ccacgagccc tgggacacag aggccatgcg ggtaggtttc
     1921 gtcctcgacc cggaaggccg cgaactcgaa ctgatctcga tgcgccgctg atccgcgcga
     1981 cggcgcggaa cagcggccgc cgtcaggggg ttctgtgggg gacaaggagc ttcccacatg
     2041 ttcatcctgc ccaagcttgc ctacggctac gccgcgcttg agccgacgct gtcggccgac
     2101 accatgcaca cccaccacga caagcaccac aaggcctatg tcgagaagac caacgagctt
     2161 gccggcaagg ctggcctggc cggtcgctcg ctcgaagagg tggtccgcga ggcccagcgc
     2221 aagggcgacg ccaagctgtt ccacaacgcc gcccaggcct ggaaccacgc cttcttctgg
     2281 caatccatga ccgcccgaac cgaagcgcca tcgcccgcgc tcaagtccgc catcgccaag
     2341 gcgttcggcg gagtcgacgc tttcaaggac gccttcatcg aagaagggtt caaccacttc
     2401 gggtccggct gggtctggct ggtcacgggg tccgagggcc tgaaggtcat ctcgacccac
     2461 gacgccgacg acaccctgat caaggacggc ctctttccgc tcctggtctg cgacctgtgg
     2521 gagcacacct actatctgga ctacaagaac gaccggaagg ccttcctcac ccgctggctg
     2581 gacggggtcg ccaactgggc cttcgccgaa cgccagctcg cggcgtcgga cggtcagggc
     2641 gagggcttcc gctacccggc ctcggccgcc aatgacgacc ccgccgaacg ccgagaggcg
     2701 cccgccaacg gggaccggcc gccggcctga gggaccctag gtcagggccg gttgtgcgcg
     2761 gcgccggcgt aggaccgcgc cggccaggcc gaagccggcg accatcagcg cccaggtcag
     2821 cggctccggc acgccagtcg acaccgtggc gctgtccacg gaaaacagaa cctgcgggtc
     2881 ggcgtaggtg cgcaccgtga tgctgggatc gtcatagctg ttgagcgtgc cgacgtagtg
     2941 caggccgccg atggtgatgg tggtcggcag ggcgctgaag tccgacggat cgaagaactg
     3001 gccaaagtgc accgagccct cgtcatcggt cttgacggtg gacgagtaga ggacattccc
     3061 gacggcatcg agcaggtcca ggctgcccgt gccgtttacg ccggtcgcgc cgccatcggt
     3121 ggcggaggac aagagccaga tgaggctcgg gttcaccagg gtgacggtct gattgcccag
     3181 gaagtcagcc gtatagtcca aggtgtcgcc ggccgagaga tcgaacgaga aatccgggct
     3241 gaaggcgccg ccggtgtcgg tgaaatcccg ccagccaaag aaggacccgg tcgggctctg
     3301 cggggcggtc agatcgaccg tctcgttcag tgtgatggtg ttggcccgcg ccgcgccaga
     3361 ggcgagaagg agcgcggtgg ccgcggcggc cagggttgct aagcgacgca tattcaaatc
     3421 cccaaatcct gaaacaagcc taacgctagg gcgacgggga cggcggcgca tggcgcattt
     3481 gagctacacc gtgtcgattt gggcgccctg gtagtcgacc agcgtggttt gacccacgcc
     3541 tgtgatccgc gcctccacct cgaacaccgt gcgcaacagc tgcggcgtga ggaccgcggg
     3601 ggtctggccg aaggccgcca gcctgccgtc cttcagcgcc atcagatggg tcgaatagcg
     3661 cgccgcgagc gtcaggtcgt ggagggcggc gatcaccagc ttgc
//
LOCUS       DATAJL010000441         1653 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33758,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000441 DATAJL010000000
VERSION     DATAJL010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33758"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..901
                     /locus_tag="VHN39_08445"
     CDS             <1..901
                     /locus_tag="VHN39_08445"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX2816409.1"
                     /translation="TGAVRIPDEKLAEVFDRGFTVVEGFLDKTTLGDAQEALWEIYPR
                     PETYFADPEAFPKFAKSQFAGLRFFPYPSWALNKVPVYPDLIDAAERFLQTREIDCYK
                     IELWAKYSGAIDYDQRHHRDYENHTIVVPRADQLMPQMTCFILLSDVTDLDGPTKAVP
                     LEKTRDVPLGITQTTMGDFFDDEVSVTGPAGSMLIYKTDVFHRGSNFKAPGRSRFVMP
                     VDFKPRGWRWQGKLAWPDRTLNPGWKEAMVSMTPRQRDLFGWPPVGDPYWNTQTLSDV
                     ALRYPGIDLSPYGAAATTAKTPA"
     gene            complement(1206..1427)
                     /locus_tag="VHN39_08450"
     CDS             complement(1206..1427)
                     /locus_tag="VHN39_08450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816410.1"
                     /translation="MSDPVPARRPPPPALWVATALGAVAVGALAVGALSVGAMAIGRL
                     AIGRGRIRRLEIDELTVRRLHIIERGPPQ"
     gene            complement(1424..>1653)
                     /locus_tag="VHN39_08455"
     CDS             complement(1424..>1653)
                     /locus_tag="VHN39_08455"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HEX2816411.1"
                     /translation="AYAYPEPAGFKAAKVRPAAARFDPALGEFVLSYEAVRAAPDPDA
                     ALLDFFQSTYEAAADLAAWPRDELERQGAFG"
BASE COUNT          276 a          590 c          545 g          242 t
ORIGIN      
        1 cactggagcc gtgcggattc ccgacgaaaa gctggccgag gtgttcgatc gcggcttcac
       61 cgtggtcgag ggcttcctgg acaagacgac gctcggcgac gcccaggagg cgctctggga
      121 gatctatccg cgtcccgaga cctatttcgc cgatccggaa gccttcccga agttcgccaa
      181 gagccagttc gcgggcctgc ggttcttccc ctacccgtcc tgggcgctga acaaggttcc
      241 ggtttatccg gatctgatcg atgcggcaga gcggttcctg cagacccggg aaatcgactg
      301 ctacaagatc gagctctggg cgaagtactc cggcgccatc gactatgacc agcgccacca
      361 ccgcgactac gagaaccaca ccatcgtcgt gccccgcgcc gaccaactga tgccgcagat
      421 gacctgcttc attctcctgt ccgatgtgac cgacctcgac gggcccacca aggccgtgcc
      481 gctggaaaag acccgcgacg tcccgctcgg gatcacccag acgacaatgg gcgacttctt
      541 cgacgatgag gtgtcggtga ccgggccggc cggctcgatg ctgatctaca agaccgacgt
      601 cttccaccgc ggctcgaact tcaaggcgcc gggccgctcg cggttcgtca tgccagtgga
      661 cttcaaaccg cgcggctggc gctggcaggg caagctcgcc tggccggacc gcaccctgaa
      721 ccccggctgg aaggaggcga tggtgagcat gacgccgcgc cagcgcgacc tcttcggctg
      781 gcccccggtg ggcgaccctt actggaacac ccagactcta agcgacgtgg ccctgcgcta
      841 tccggggatc gatctttcgc cctatggcgc ggccgcgacc acggctaaga ccccggcgtg
      901 aagcgccaga ggatcacgtc tcgcttcccg gcgaagccgg ggcgggagac tgggccagcg
      961 tgctgcaggc tgtgacccgc gacctgccga cgttcttcgg ccagacctaa cggcgaaggc
     1021 cattgcgccg atggacccgg cgccgacggc cagcacgccc aggcccgctg ctccggcagc
     1081 tgtgaggtcc gggccgacag cggcgaaccg ttcaccacta ccccagatcg cagtttccgc
     1141 cgccacgagc ccacgccgcg tggcgccccg gcgctccgga ggccggagcg ccgggggttc
     1201 tcgccctatt gcggggggcc gcgctcgatg atgtggagcc gtctgacggt gagttcatcg
     1261 atctccaggc gcctgatgcg gccacggccg atggcgaggc ggccgatggc catggccccg
     1321 accgagagcg cccccaccgc cagcgcgccc accgccacag ctcccaaggc ggttgcgacc
     1381 cacaacgcgg gcggcggcgg tcgtctggcg gggacaggat cgctcatccg aaggctcctt
     1441 ggcgctccag ctcgtcccgc ggccaagccg cgagatcggc cgccgcctca taggtcgact
     1501 ggaagaaatc gagcaaggcc gcgtccgggt ccggcgccgc gcgcacagcc tcataggaca
     1561 gaacgaactc gcccagcgcc gggtcgaacc gcgcggcggc ggggcggacc ttagcggctt
     1621 tgaaccccgc gggctccggg taggcgtagg cgt
//
LOCUS       DATAJL010000442         3514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46483,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000442 DATAJL010000000
VERSION     DATAJL010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3514
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46483"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..1219
                     /gene="rho"
                     /locus_tag="VHN39_08460"
     CDS             2..1219
                     /gene="rho"
                     /locus_tag="VHN39_08460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEX2816412.1"
                     /translation="MLAFAELFEIENANSMRKQDMMFSILKVLAEEDVEISGSGTLEV
                     VQDGFGFLRSPEANYLPGPDDIYVSPSQIRKFGLRTGDTVDGAIRAPREGERYFALVK
                     VDLTNFENPENVRHKVLFDNLTPLYPDQRLKMEIDDPTLKDRSGRVIDIVAPLGKGQR
                     CLITSPPRVGKTVMLQNIAKSIETNHPECYLIVLLIDERPEEVTDMQRTVKGEVISST
                     FDEPATRHVQVAEMVIEKAKRLVEHKRDVVILLDSVTRLGRAYNTTVPSSGKVLTGGV
                     DANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDR
                     KVADKRVYPAIDVIKSGTRKEELITPKEHLQKTYILRRILGPMGAQDAIEFLLDKLRN
                     AKTNEEFFSSMNT"
     gene            complement(1312..2286)
                     /locus_tag="VHN39_08465"
     CDS             complement(1312..2286)
                     /locus_tag="VHN39_08465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012289009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HEX2816413.1"
                     /translation="MRAIRFAQTGGPEVLELVEIDRPEPKPGQVLIRHAAIGVNFIET
                     YQRSGLYPMKLPSGLGGEAAGVVEAVGEGVTRFKVGDRVATAGSGSPGAYADYSVSHA
                     ERTVALPDAIDFDTAAASLLKGMTTEFLLRRLHRVEAGETILVHAAAGGVGQIMVQWA
                     KALGAVVIATVGSEAKAARVRELGADHVILYRDQDVATEVRRITDGKGVPVAYDSVGK
                     DTFEGTLKSLARRGVFVSFGNASGPAPAVEGRQLMLGGSLFFTRPTMADYVATTDELD
                     ASAAALFEMISSGKIRIEIGQTFPLVDARSAHEALEGRATIGASLLIP"
     gene            complement(2286..2996)
                     /locus_tag="VHN39_08470"
     CDS             complement(2286..2996)
                     /locus_tag="VHN39_08470"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2816414.1"
                     /translation="MGERTTITTADGTFSAYVARPAKPKAPAVVVIQEIFGVNQVMRD
                     ITDGLAGQGYLAICPDLFWRIEPGIDITDRSDAEWKRAFELFNAFDVEAGVGDIAATI
                     AHVRADPGCDGKVGAVGYCLGGQLAFLTATRTDADASVSYYGVGLENRVAEAEKLTHP
                     LLMHIAEDDQFVPRPAQAVILAALKDHPQVEIHTYPGCDHAFAREGGDHFNAAAAKLA
                     NGRTLTFFQKTLSDGSLG"
     gene            3096..3338
                     /locus_tag="VHN39_08475"
     CDS             3096..3338
                     /locus_tag="VHN39_08475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6489 family protein"
                     /protein_id="HEX2816415.1"
                     /translation="MKMTIEVDCTPEEARRFMGLPDVSALNEHLVNEMKGRIDANMSM
                     ISPDELMKNWMAFGTGAQEHFRKLMEVGMSAATTRK"
     gene            3335..>3514
                     /locus_tag="VHN39_08480"
     CDS             3335..>3514
                     /locus_tag="VHN39_08480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEX2816416.1"
                     /translation="MSDTIFAPATAAGRSAVAVVRLSGPGTAKAVRALAGRLPAARRA
                     SLRKLSDANGRAIDEA"
BASE COUNT          621 a         1167 c         1169 g          557 t
ORIGIN      
        1 cctgctggcc ttcgccgagc tgttcgagat cgaaaacgcc aactccatgc gcaagcagga
       61 catgatgttc tcgatcctca aggtcctggc cgaggaggac gtcgagatct ccggctccgg
      121 caccctggaa gtggtgcagg acggcttcgg cttcctgcgc tcgccggaag ccaactacct
      181 gcccggaccc gacgacatct atgtcagccc gtcgcagatc cggaagtttg gcctcaggac
      241 cggcgacacg gtggacggcg ccatccgcgc cccgcgcgag ggcgagcgct acttcgccct
      301 cgtaaaggtc gacctgacca atttcgagaa ccccgaaaac gttcgccaca aggtgctgtt
      361 cgacaacctg acgccgctct atcccgacca gcggctgaag atggagatcg acgatccgac
      421 cctgaaggac cgctccggcc gggtcatcga catcgtggcc ccgctcggaa agggccagcg
      481 ctgcctgatc acctcgccgc cgcgggtcgg caagacggta atgctgcaga acatcgccaa
      541 gtccatcgag accaaccacc ccgagtgcta cctgatcgtg ctcttgatcg acgaacgccc
      601 ggaagaagtc accgacatgc agcgcaccgt gaagggcgaa gtgatctcct cgaccttcga
      661 cgaaccggcc acacgccacg ttcaagtcgc tgaaatggtt atcgaaaaag ccaagcgcct
      721 ggtcgagcac aagcgcgacg tggtgatcct gctggacagc gtcacccgcc tgggccgggc
      781 ctacaacacc acggtcccgt cttccggaaa ggtgctcacc ggcggtgtcg acgccaacgc
      841 cctgcagcgc ccaaagcgct tcttcggcgc ggcgcggaac atcgaggagg gcggctcgct
      901 gaccatcatc gccaccgcgc tgatcgacac cggcagccgg atggacgagg tgatcttcga
      961 agagttcaag ggcaccggca actcggaaat cgtgctcgac cgcaaggtcg ccgacaagcg
     1021 ggtctatccg gccatcgacg tgatcaagtc cggcacccgc aaggaggagc tgatcacgcc
     1081 caaggagcac ctgcagaaga cctacattct gcgccgcatc ctgggcccga tgggcgccca
     1141 ggacgccatc gagttcctgc tcgataagct gcgcaacgcc aagaccaacg aggagttctt
     1201 ctcctccatg aacacctagg gcttgcggcc ctaccggggc ctacccgttc tacttgtgtt
     1261 tcacgtgaaa caaggcgccg tcgcttcgcc cgaagcgacg gcgttttgct gtcaggggat
     1321 cagcaggctc gccccgatgg tcgcccggcc ctcgagggcc tcatgcgcgc tgcgggcgtc
     1381 gaccagcggg aaggtctggc cgatctcgat cctgatcttg ccggagctga tcatctcgaa
     1441 gagcgccgcg gcgctggcgt cgagctcgtc cgtcgtcgcc acgtagtcgg ccattgtggg
     1501 gcgcgtgaag aagagtgagc cacccagcat cagctggcgg ccctctaccg ccggcgcggg
     1561 cccggaagcg ttgccgaagc tcacgaagac cccgcgcctc gccaggctct tgagcgtgcc
     1621 ctcaaaggtg tccttgccca ccgagtcgta ggcgaccggc acgcccttac cgtcggtgat
     1681 ccggcggacc tcggtggcca cgtcctggtc gcggtagagg atcacgtggt cggcgcccag
     1741 ctcccgcacg cgcgcggcct tggcctcgga cccgaccgtg gcgatcacca ccgcgcccag
     1801 ggccttggcc cactggacca tgatctggcc gaccccgccg gcggcggcat ggaccaggat
     1861 cgtctcgccg gcctcgaccc ggtgcaggcg tcgcaacagg aactcggtcg tcatgccctt
     1921 caggaggctg gcggcggcgg tgtcgaaatc gatggcgtcg ggcagggcga cggtccgctc
     1981 ggcgtggctc acggaatagt cggcgtaggc cccgggtgag ccggagccgg cggtggccac
     2041 ccggtcgccg accttgaagc gcgtgacacc ctcgccgacc gcttccacca cacctgccgc
     2101 ttcgccgccg aggcccgagg gcagtttcat cggatagagg ccggagcgct ggtaggtctc
     2161 gatgaagttc acaccgatcg cggcgtgtcg gatcagcacc tggccgggtt tgggctcggg
     2221 ccggtcgatc tcgacgagct cgaggacctc cgggccgccg gtctgggcga agcggatcgc
     2281 gcgcatcagc ccaaacttcc gtcagaaagc gtcttctgga agaaggtgag ggtccgcccg
     2341 ttggcgagct tggccgccgc ggcgttgaag tgatcgccgc cctcccgggc aaaggcgtgg
     2401 tcgcacccag gataggtgtg gatctcgacc tgcgggtggt ctttgagcgc cgccaggatc
     2461 accgcctggg ccggcctggg cacgaactga tcgtcttcgg cgatgtgcat caggagcggg
     2521 tgggtcagct tctcggcttc ggccacgcga ttttccaggc cgacgccata gtaggagacc
     2581 gaagcgtccg cgtcggtgcg ggtggcggtc aggaaggcga gctggccacc caggcaatag
     2641 cccacggcgc ccaccttgcc gtcgcagccg gggtcggcgc ggacgtgggc gatggtggcc
     2701 gcgatatcgc cgacgccggc ctcgacatcg aaggcgttga agagttcgaa ggcccgcttc
     2761 cactcggcgt ctgacctgtc ggtgatatcg atgccgggct cgatccgcca gaagaggtcg
     2821 ggacagatgg ccagataacc ctggcccgcg aggccgtcgg tgatgtcgcg catcacctgg
     2881 ttcacgccga agatttcctg gatcaccaca acggcgggcg ccttgggctt ggcgggccgg
     2941 gccacatagg cgctgaaggt cccatccgcg gtggtgatcg tggtgcgctc gcccatgaca
     3001 ggtctcctca aggtttccgt ttggctcttg gtctgcgcta ctagcgcgcg aggccgctcc
     3061 acggccatat gcaaagcgaa cgggagcttt tggccatgaa gatgacgatc gaggtggact
     3121 gcacgcccga ggaggcccgg cgcttcatgg gcctgcccga cgtgagcgcg ctcaacgagc
     3181 acctggtgaa cgagatgaag ggtcgcatcg acgccaacat gtcgatgatc tcgcccgacg
     3241 agctgatgaa gaactggatg gcgttcggga ccggcgccca ggagcacttc cgcaagctga
     3301 tggaagtggg catgagcgcg gccaccacga ggaaatgagc gacaccatct tcgcgcccgc
     3361 cacggccgcg ggccgctcgg cggtcgcggt ggtgcggctg tcggggccgg ggacagccaa
     3421 ggccgtgcgg gcgctcgccg gacggctgcc ggcagccagg cgggcgtcct tacgcaaact
     3481 cagcgacgca aatggcaggg cgatcgatga ggcc
//
LOCUS       DATAJL010000443         5461 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33837,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000443 DATAJL010000000
VERSION     DATAJL010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5461
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33837"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..423
                     /locus_tag="VHN39_08485"
     CDS             <1..423
                     /locus_tag="VHN39_08485"
                     /inference="COORDINATES: protein motif:HMM:NF022461.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2846 domain-containing protein"
                     /protein_id="HEX2816417.1"
                     /translation="GLAQAAEPASKPAASSVVAPAPAGKGQVVFFRKSSLFGFPYWTN
                     IRENDVALGKLTNGAYFVQTLDPGVHMFNTSVLGKDAMKLQIDPGETYYVEGKITMAV
                     VGYTIVMAPSDEGAFQKSLKGMKPAPPVDPAKADAAAK"
     gene            599..2005
                     /locus_tag="VHN39_08490"
     CDS             599..2005
                     /locus_tag="VHN39_08490"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2816418.1"
                     /translation="MAASRVHGYDLSLPAGAKAGQFTGFKPCQFTGLASRGTDQAECG
                     TLVVAESRARPKGRLLALPVVKLPALKPTTLTPLFFFQGGPGATNLQYGVEAPTVFQE
                     HDIYMLGYRGVDDLQPLECPEVGIAVVGPHPLGGEIRGRITAASKACAQRLAAAGIDV
                     RAYGMVDVVADYEDLRTALGIKTVSLIGASYGTRIEQYYARLHPSIVSRSVQFGVNPP
                     GHFRWFPKTNDAIVAAYARLCAADAWCSQQTPDLVRTTMSVLSRTDFDADGQKVDMDR
                     VRIAAFFQLMNKPSSIQLFRALIAAEKGDTRALVGMARSYDGIMPHAFVWGEATGKAG
                     ADCDPADGSFAPARMPTAASFGSPLDLVLFAACQGWPVQPPPPGFAVAGRDATETLLV
                     NGDLDASTPLRYVQGELMPHLPRGHLFILKGQGHDGWRNEQPPAFDRLVATFLRTGAM
                     DDTLYRPATVSFGGPATR"
     gene            2058..2333
                     /locus_tag="VHN39_08495"
     CDS             2058..2333
                     /locus_tag="VHN39_08495"
                     /inference="COORDINATES: protein motif:HMM:NF021552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2277 domain-containing protein"
                     /protein_id="HEX2816419.1"
                     /translation="MCRNIKTLFNFDPPATDGEIRAASLQFVRKLSGFNAPSKANEAA
                     FNAAIDEVFATGRRLLTSLETHAPPRDRETEAQKAKARAAERFGVRA"
     gene            2510..3250
                     /locus_tag="VHN39_08500"
     CDS             2510..3250
                     /locus_tag="VHN39_08500"
                     /inference="COORDINATES: protein motif:HMM:NF019311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816420.1"
                     /translation="MKLSTKVMCSAAAAAALLAGPAAHADTVNAILSAHYFELSVTDP
                     DTGFFTTPTGIGSTLGLDGMPTATGGVHDISGGVLTWWDPTLNSNVHSTGTGTIALPY
                     TSNMYGPNSTGTNDDRVYETAIFTGAFSLASSGTVDFVLGSDDDSFIYVDGKLFGDNP
                     GVHGVTTVDFTSPMLTAGSHDIEVFYADRDHTGAFLSLTLGSNSSGVVITPPNGVPEP
                     ATWAMMLVGFGGLGATMRARRRLAATAA"
     gene            complement(3247..4125)
                     /gene="yghU"
                     /locus_tag="VHN39_08505"
     CDS             complement(3247..4125)
                     /gene="yghU"
                     /locus_tag="VHN39_08505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HEX2816421.1"
                     /translation="MSEATAYVPPTVWTWDKENGGRFANINRPIAGSTHEKDLPVGKH
                     PLQLYSLATPNGVKVTVMLEELLALGHTGAEYDAWLINIGAGDQFGSGFVAVNPNSKI
                     PALMDRSGPEPIRVFESGAILVHLAEKFGEFLPSAPGPRAECMSWVMWLMGSAPFLGG
                     GFGHFYAYAPSKMEYPINRYAMEVKRQMDVLDRRLAESEYLGGSEYTIADMATWPWYG
                     ALAKGVLYEAGEFLSVSEYKHVQRWTDQIAARPAVKRGRMVNRAFGEPSSQLLERHDA
                     SDFETKTQDKVPAAKS"
     gene            4287..>5461
                     /locus_tag="VHN39_08510"
     CDS             4287..>5461
                     /locus_tag="VHN39_08510"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX2816422.1"
                     /translation="MKLLNLFDRGLDEMAAGTRVGFAPRIAATVGVGLTALAFLPAPV
                     CLAWWAFVASMDVVSWFITRDQFLGRPVGWGPRLGHVACLVGGVAAWVLLGIMFWRTG
                     SAAGAVSAVAIWLSLMGFAQVYAYQSRAGYLLAGVFPAGAMLITPFASPNPAVPGSLP
                     VWLILALSVGFAISGARQTMAARRQYDQATQDLRDSEQSYRLLADNVTDVISLASVDN
                     QRLYVSPSIERILGFSAGELIETPNYTYMHPDDTEAVQGFIQAVTVESGPQTLEYRVF
                     AKDGSVIWAETTFSRLNDGSGRVLGVSRDVTGRKALETELIDAVARSESAAAAKTDFL
                     ANMTHELRTPLTAIVGFAGVLRGSKTMSNQDARHASLIHDASQTLLGVVGDVLDFSKL
                     "
BASE COUNT          856 a         1916 c         1790 g          899 t
ORIGIN      
        1 gggctggcgc aggccgccga gccggcgtcc aagccggcgg cctccagcgt cgtggcgccg
       61 gcgccggccg gcaaggggca ggtggtgttc ttccgcaagt cgtcgctgtt cggctttccc
      121 tactggacca atatccggga aaacgatgtc gccctcggca agctcaccaa cggggcctat
      181 ttcgtccaga ccctcgatcc gggcgtccac atgttcaaca cctcggtgct cggcaaggac
      241 gcgatgaagc tgcagatcga ccccggcgag acctattacg tcgagggcaa gatcaccatg
      301 gcggtcgtcg gctacaccat cgtcatggcg ccctctgacg agggggcgtt ccaaaagtcg
      361 ctcaagggca tgaagcccgc gccgccggtc gatcccgcca aggcggacgc ggccgccaag
      421 taggggcgag cgctcgcctt ccattgccgc gacttaactt gcggccgcgc gagcttcacc
      481 gacactgagg tcctcaggcg cccaggggac ggcaggttcg aacatggtcg cacagcccgt
      541 ttcccgacat ttggtcgtcg cggccgcctg cgccctcgcc ctggcggtcg cgaccccagt
      601 ggcggcgagc cgcgtccacg gctacgacct cagcctgccg gcgggcgcca aggccggcca
      661 gttcacgggc ttcaagccct gccagttcac cggcctcgcc agccggggga ctgaccaggc
      721 cgaatgcggg accctggtgg tggcggagag ccgggccagg cccaagggac gcctgctggc
      781 cttgccggtg gtgaagctcc cggccttgaa gccgacgacg ctcacgccgc tgttcttctt
      841 ccagggcggt cccggcgcga cgaacctgca atatggcgtg gaagccccga cggtgttcca
      901 ggaacacgac atctacatgc tgggctatcg cggggtcgat gacctgcagc ccctggagtg
      961 ccccgaggtc ggcatagccg tggtgggccc tcatccgctg ggcggcgaga tccgcgggag
     1021 aatcacggcc gcctcgaagg cctgcgccca gcgcctggcc gccgccggga tcgatgtccg
     1081 ggcctacggc atggtggacg tcgtcgccga ttatgaggac ctgcgcacag ccctggggat
     1141 caagaccgtc agcctgatcg gcgccagcta cgggacccgc atcgagcagt actatgcgcg
     1201 gctgcatccg agcatcgtca gccgatcggt gcagttcggg gtgaacccgc ccggccactt
     1261 ccggtggttc cccaagacca acgacgcgat cgtcgcggcc tacgcccggc tctgcgcggc
     1321 cgacgcctgg tgcagccagc agacgcccga tctcgtgcgg accacgatgt cggtgctgtc
     1381 ccgcacggac ttcgacgcag acggccaaaa ggtcgacatg gaccgcgtcc gcatcgccgc
     1441 cttcttccag ctgatgaaca aaccgtcctc gatccagctc ttccgggcgc tgatcgccgc
     1501 ggaaaaaggc gacacccggg cgctggtcgg catggcgcga tcctacgatg ggatcatgcc
     1561 gcacgccttc gtctggggtg aggccaccgg caaggcgggc gccgactgcg atccggcgga
     1621 cggatccttc gcgcccgccc ggatgccgac cgcggcgtcc ttcggatcac ccctggatct
     1681 ggtcctgttc gccgcctgcc agggctggcc ggtccagccg ccgccgccag gcttcgccgt
     1741 cgccgggcgc gacgcgaccg aaactctgct ggtcaacggc gatctcgatg cctcgacgcc
     1801 gctccgctac gtccagggcg agctcatgcc ccaccttcca aggggccatc tcttcatcct
     1861 gaaaggccag ggccacgacg gctggcgcaa cgagcagccg ccggccttcg accggctggt
     1921 cgcgaccttc ctgcgcaccg gcgcgatgga cgacacgctc tacaggcccg cgacggtctc
     1981 gttcggcggc ccagccacgc gatgacgcga accgccccgt cgcgctatcc tgccctgacc
     2041 tcgggaggcc tcagcccatg tgccgcaaca tcaagaccct gttcaacttc gacccgccgg
     2101 ccaccgacgg ggagatccgc gcggcgtcgc tgcagttcgt ccgcaagctc tccggcttca
     2161 acgcgccgtc caaggccaat gaggccgcct tcaacgccgc catcgacgag gtgttcgcca
     2221 cgggccggcg cctgctcacc tcgctggaga cccatgcccc gccgcgcgac cgtgagaccg
     2281 aggctcaaaa agccaaggcc cgcgccgcgg agcgcttcgg cgtccgggcc tgaggcgcgg
     2341 gcgtggtcaa ggccgccgca cgtcccgatg acgccgatcg ctcgcctgtc gcgcgaattt
     2401 tcgcataaaa atcaagcgag atcgcctaaa taggcaatag ctcccgccaa tcccgctccg
     2461 taacgttgcc ccatagccgg cacacgccca ggctgttggg agacgtgaga tgaagctttc
     2521 gaccaaggtg atgtgctcgg cggcggccgc cgcggccctg ctcgccggtc cggccgcgca
     2581 tgcggacacc gtgaacgcca tcctgtcggc gcactatttc gaactctcgg ttaccgaccc
     2641 ggacaccggc ttcttcacca ccccaaccgg gatcggaagt acgcttgggc ttgacggaat
     2701 gcccacggcc accgggggcg tccacgacat cagcggcggc gtactcacct ggtgggaccc
     2761 gacgctgaac agcaatgtgc attccaccgg gaccggaaca atcgcgttgc cgtacacgag
     2821 caacatgtat gggccgaaca gcaccggcac gaatgacgac agggtctacg agaccgccat
     2881 attcacaggc gcattcagcc tcgcttcgtc agggacggtg gacttcgtgc tgggctccga
     2941 cgacgattcc ttcatctacg tggatgggaa attgttcggc gacaatcccg gggtgcacgg
     3001 cgtgaccacc gtggacttca cctccccgat gctaacggcc ggctcccacg acatcgaggt
     3061 gttttacgcg gatcgtgacc acacaggggc cttcctgtcg ttgaccctgg ggtcgaattc
     3121 gagcggcgtg gtgatcacac cccccaacgg tgttccggag cccgcgacct gggcgatgat
     3181 gctcgtgggc ttcggcggcc tgggcgcgac gatgcgggcg cggcgcagac tggcggccac
     3241 cgcggcctag gatttcgccg ccgggacctt gtcctgggtc ttggtctcga agtcgctggc
     3301 atcgtggcgt tcgagcaact ggctcgaagg ctcgccgaag gcgcggttga ccatccggcc
     3361 gcgcttcacg gccgggcggg cggcgatctg gtcggtccag cgctggacgt gcttgtattc
     3421 gctcaccgac aggaactcgc cggcctcgta gagcacgccc ttggcgagcg ccccgtacca
     3481 gggccaggtg gccatgtcgg cgatggtgta ctcggagccg cccaggtact cgctttccgc
     3541 cagccggcgg tccagcacat ccatctgtcg cttcacctcc atggcgtagc ggttgatggg
     3601 gtattccatc ttcgagggcg cataggcgta gaagtggccg aacccgccgc ccaggaaggg
     3661 cgctgagccc atcagccaca tcacccagga catgcactcc gcgcggggcc cgggcgcgct
     3721 cggcaggaat tcaccgaatt tctccgccag gtggaccagg atcgcgccgc tctcgaacac
     3781 ccggatcggc tcaggcccgc tgcggtccat caaggccggg atcttggagt tggggttcac
     3841 ggccacgaag ccggagccga actggtcgcc ggcgccgatg ttgatcagcc aggcgtcata
     3901 ttccgcgccc gtatggccca gcgccaggag ctcctccagc atcaccgtca ccttcacccc
     3961 gttgggcgtg gccagcgaat agagctgcag ggggtgcttg ccgaccggca ggtccttttc
     4021 gtgggtggag cccgcgatcg ggcggttgat gttggcgaac cggccgccgt tctccttgtc
     4081 ccaggtccag acggtgggcg ggacgtaggc ggtggcttcg gacatggttc gggtttcctg
     4141 gagtgatggg gcgcaggtgc ggacagcccg cgcacgcctg cgatgtgggg aactggcgcg
     4201 ggtttggcca gccccgcggg caatctcggg tcaagcttat ctggaattaa tggttgtctg
     4261 gaatgatcgg tggtcgcgag gggaccatga agctcctgaa cctattcgac cgaggcctcg
     4321 acgagatggc ggcgggcacg cgcgtggggt tcgcgccgcg gatcgccgcc accgtcggcg
     4381 tgggcctgac ggcgcttgcc ttcctgcccg cgcccgtctg cctggcctgg tgggcctttg
     4441 tggccagcat ggacgtggtg agctggttca tcacccgcga ccagttcctg ggacggcccg
     4501 tgggctgggg cccgcgcctg ggccatgtcg cctgcctggt gggcggcgtc gcggcgtggg
     4561 tgctgctcgg catcatgttc tggcgcaccg gctcggccgc cggcgccgtc tccgccgtgg
     4621 cgatctggct ctccctcatg ggattcgctc aggtctacgc ctaccagtcc cgcgcgggct
     4681 atctgctggc cggcgtgttc ccggccggcg ccatgctgat caccccgttc gcctcgccca
     4741 atccggcggt tccgggcagc cttcccgtct ggctgatcct ggcgttgagc gtcggcttcg
     4801 ccatctccgg cgcccgccag accatggccg cgcgccgaca gtacgatcag gccacccagg
     4861 acctgcgcga cagcgaacag agctaccgcc tgctggccga caacgtcacc gacgtcatct
     4921 cgctggccag cgtcgacaac cagcgcctct acgtctcgcc ctccatcgag cgcatcctgg
     4981 gcttctcggc gggagagctc atcgagacgc cgaactacac ctacatgcac cccgacgaca
     5041 ccgaggcggt ccagggcttc atccaggccg tcacggttga aagcggcccg cagaccctgg
     5101 aataccgggt gttcgccaag gacggctcgg tgatctgggc ggagaccacc ttctcgcgtc
     5161 tgaacgacgg cagcggccgc gtcctggggg tctcgcgcga tgtcaccggc cgcaaggcgc
     5221 tcgagaccga gctgatcgat gccgtcgcga ggtccgaatc cgccgcagcg gccaagaccg
     5281 acttcctggc caacatgacc cacgagctgc gcacgccgct tacggccatc gtcggcttcg
     5341 cgggcgtctt gcgcggctcc aaaacaatgt ccaaccagga cgcgcgccat gcgagcctga
     5401 tccatgacgc cagtcagacc ctgctgggcg tggtcggcga cgtgctggat ttctccaagc
     5461 t
//
LOCUS       DATAJL010000444         2625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_33849,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000444 DATAJL010000000
VERSION     DATAJL010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2625
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_33849"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..827)
                     /locus_tag="VHN39_08515"
     CDS             complement(<1..827)
                     /locus_tag="VHN39_08515"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2816423.1"
                     /translation="MTAVLTLDDLRVDFDTHDGVVDAVRGVSLSIPRGETLGVVGESG
                     SGKSQTFMAVMGLLARNGRASGSARFLGTELLDLKPRALNRIRGSRMTMIFQDPLTAL
                     TPHLRIGEQIAEPLRVHLGLSGRDATAHAKLWLEKVRIPDAAQRLRQYPHELSGGMRQ
                     RVMIAAAMAGGPELLIADEPTTALDVTVQAEILDLMAELSRETGTAMVLITHDMGVIA
                     RLADRVCVMKDGAFVEQGTAEQIFRAPQTAYTRSLLDAIPRLDREGRNRVQQAPRVGG
                     "
     gene            876..1454
                     /locus_tag="VHN39_08520"
     CDS             876..1454
                     /locus_tag="VHN39_08520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX2816424.1"
                     /translation="MKSPRRTAHRYSPHVPETPSPSPLRPALFLDRDGVLNEDHGYVS
                     RWEDFRWIAGAKRAVAAFNRAGWLVIVVTNQSGVGRGFYTEDAMHALHARMADELAEV
                     GGRIDAFYHAPQHPDAPLDAYRHPDPPDRKPNPGMILRALSEWPIDREASLLVGDKPS
                     DLEAALRAGIRGVLFSGGDLLQFLSDEALLPG"
     gene            1545..1913
                     /locus_tag="VHN39_08525"
     CDS             1545..1913
                     /locus_tag="VHN39_08525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816425.1"
                     /translation="MRKFLALTALAAAISLPLIAGPTDANASCQGRKTTGTVLGGLGG
                     ALIGNSISRGGGGAVVGGLGGAVLGHEIAKSGCGGSRHASYRNSRNRYAAEQNGPVRK
                     IYYDQYGNALITPAAAVYRP"
     gene            1958..2422
                     /locus_tag="VHN39_08530"
     CDS             1958..2422
                     /locus_tag="VHN39_08530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816426.1"
                     /translation="MKRNFAAAVLALAALGLTACSERQEMAANPKVCADFAPAAKAAP
                     VIAGAEGAAPVDDCVRKWAYSLAASRDPAATVAEATVAACNVQLARWNQQALAQPGSD
                     VEAASITTGEPTTPLAEHSNFTASRALFYVVQARAGRCGPPPMTNGVPDGVS"
     gene            complement(2432..>2625)
                     /locus_tag="VHN39_08535"
     CDS             complement(2432..>2625)
                     /locus_tag="VHN39_08535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEX2816427.1"
                     /translation="VRAEPHAGLVFEVAFEGLQRSTRHKSGVAMRFPRISRLRWDKPP
                     GEADDLATLERMLETMERR"
BASE COUNT          385 a          948 c          909 g          383 t
ORIGIN      
        1 ccgcctacac gcggagcctg ctggacgcga ttccgcccct cgcggtcgag gcgcggaatc
       61 gcgtccagca ggctccgcgt gtaggcggtc tggggcgcgc gaaagatctg ctcggcggtg
      121 ccctgctcga cgaaggcgcc gtccttcatc acgcagaccc ggtcggcgag cctcgcgatc
      181 acgcccatgt cgtgggtgat cagcaccatg gcggtcccgg tctcccgcga gagttcggcc
      241 atgaggtcga ggatctcggc ctggacggtg acgtcgaggg cggtggtggg ctcgtcggca
      301 atgagcagct caggtcctcc cgccatggcg gcggcgatca tcacccgctg gcgcatgccg
      361 ccggagagtt cgtgcgggta ttggcgcagg cgctgggcgg cgtcggggat gcgcaccttc
      421 tccagccaga gtttggcgtg ggccgtggcg tcgcggccgc tcaggcccag gtgcacgcgc
      481 aggggctcgg cgatctgctc gccgatccgc aagtgcggcg tcagcgcggt cagcgggtcc
      541 tggaagatca tggtcatcct cgagccgcgg atgcggttca gcgccctggg tttgaggtcc
      601 aggagctcgg tcccgagaaa cctcgccgac ccggacgcgc ggccattgcg ggccaagaga
      661 cccatgaccg ccatgaaggt ctggctcttg cccgagccgc tctcgccgac cacgcccagg
      721 gtctcgccgc gcgggatcga gagcgagacg ccgcgcaccg cgtcgacgac gccgtcgtgg
      781 gtgtcgaaat ccacgcgcag gtcgtcgagg gtcagtacgg cggtcaacgg atcacctcaa
      841 gctggacacc gaccttagcg aggccctccg gctttttgaa atcgcctcgc cgcacggcgc
      901 accgctatag tccgcatgtg cccgagaccc cgtcacccag cccgctgcgc cccgcgctgt
      961 tcctcgatcg cgacggggtg ctgaacgagg accatggcta cgtcagccgc tgggaggatt
     1021 tccgatggat cgccggcgcc aagcgggcgg tggcggcctt caaccgggcc ggctggctgg
     1081 tgatcgtggt gaccaaccag tcgggcgtcg ggcgtggctt ctataccgag gacgccatgc
     1141 acgctctgca cgcgcggatg gccgatgagc tggccgaggt cggcggccgg atcgacgctt
     1201 tctaccacgc gccgcagcac cccgacgcgc cgctggacgc ctatcgccac cccgacccgc
     1261 ccgaccgcaa gcccaacccc ggcatgatcc tgcgcgcgct ttcggaatgg cccatcgacc
     1321 gggaggcttc gctgctggtg ggcgacaagc cgtcggacct ggaggcggcg ctacgcgcag
     1381 gcatccgcgg cgtgctgttt tccggcgggg acctgctgca attcctcagc gacgaggcgc
     1441 tgctgcccgg ctgaggtgtt gtaggcccgg acgacatccg tctgcatccc gacaccgtct
     1501 tgcgcgttgt cagggcctca gttcacagga tcgagaccca agccatgcgc aagttcctag
     1561 ccctgaccgc cctcgcggcg gccatatcct tgccgttgat cgcgggcccc acggacgcca
     1621 acgcgtcgtg ccaggggcgg aagaccacgg gcacggtgct gggcggcctc ggcggcgcgc
     1681 tcatcgggaa ctcgatctcc aggggcgggg gcggagcggt cgttggcggc ctcggcggcg
     1741 cggtcctggg ccacgagatc gccaagagcg gctgcggcgg gtcgcgccac gcctcctatc
     1801 gcaacagccg caaccgctat gccgccgagc agaacggccc ggtccgcaag atctattacg
     1861 accagtacgg caacgccctc atcacgccgg ccgccgctgt ctaccgcccc tgacacgaca
     1921 gcccgcgcgc cgtccaattc ccactgaggt ccgacacatg aaacgcaatt tcgccgcggc
     1981 cgtcctggcc ctcgccgccc tgggcctcac tgcctgtagc gaacgccagg agatggccgc
     2041 caatccgaag gtctgcgccg acttcgcgcc ggccgccaag gcggcgccgg tgatcgcggg
     2101 cgccgaaggc gccgcgccgg tcgacgactg cgtgcgcaaa tgggcctata gcctggccgc
     2161 ctcgcgcgac ccggccgcca cggtggccga ggcgaccgtc gcggcctgca atgtccagct
     2221 cgcgcggtgg aaccagcagg cgctcgccca gccgggctcc gatgtggaag ccgccagcat
     2281 caccaccggc gagccgacga ccccgctcgc ggagcacagc aacttcacgg ccagccgggc
     2341 gctattctat gtggtccagg cccgcgccgg gcgctgcggc ccgccgccca tgaccaacgg
     2401 cgtgccggat ggcgtgagct aggccggggc ctcagcgcct ctccatcgtc tccagcatcc
     2461 gctcgagcgt cgccaggtca tccgcctcgc ccggcggctt gtcccagcgc agacggctga
     2521 tccgcgggaa gcgcatggcg acgccggact tgtggcgcgt ggagcgttgc aggccctcga
     2581 aggcgacctc gaagaccagg cccgcgtggg gctcggcgcg gaccg
//
LOCUS       DATAJL010000445         2102 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93599,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000445 DATAJL010000000
VERSION     DATAJL010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93599"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..631)
                     /locus_tag="VHN39_08540"
     CDS             complement(122..631)
                     /locus_tag="VHN39_08540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CarD family transcriptional regulator"
                     /protein_id="HEX2816428.1"
                     /translation="MSKTSHDFSVGDHVVYPAHGVGQVQGIEVQEVAGLQLEVYVITF
                     DHEKMTLRVPTAKARTAGLRALAETNVVTQALTTLKGRARVKRTMWSRRAQEYEAKIN
                     SGDLISIAEVVRDLHRAENQPEQSYSERQLYESALDRMAREVAAIERIDRDAAIGILN
                     KSLVKAVAA"
     gene            complement(955..1296)
                     /gene="fdxA"
                     /locus_tag="VHN39_08545"
     CDS             complement(955..1296)
                     /gene="fdxA"
                     /locus_tag="VHN39_08545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin FdxA"
                     /protein_id="HEX2816429.1"
                     /translation="MTYIVMDACIKCKYMDCVEVCPVDCFYEGENFLAINPDECIDCG
                     VCEPECPVDAIKPDTEDDADGKWLRINSEYSRVWPNITVKGEAPADAEAFERETGKLE
                     KYFSEKPGHGS"
     gene            complement(1428..1721)
                     /locus_tag="VHN39_08550"
     CDS             complement(1428..1721)
                     /locus_tag="VHN39_08550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEX2816430.1"
                     /translation="MSEPAPTEATRADVWLWRARFFKTRTLAADFIEEGRIRLTRAGH
                     ENRVDKPARSLKVGDALVFALGGKLIAVKIEALGERRGSAAEARTLYSKLDAA"
     gene            complement(1718..>2102)
                     /locus_tag="VHN39_08555"
     CDS             complement(1718..>2102)
                     /locus_tag="VHN39_08555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphonate-binding protein"
                     /protein_id="HEX2816431.1"
                     /translation="SPRGLAAFGLRAVRSLAVPVEQLERLDDLLRAGERQGGGVVFSD
                     EARAALGWTPDEAREILKGLGYAAVKRTGEATAWRRRAERDFSLEHRPIIAPNSPFAA
                     LATLKGEPAPARRPRRRRRIGTARP"
BASE COUNT          338 a          676 c          717 g          371 t
ORIGIN      
        1 gccatggcct gtcctcccac cgtcgcccat agctggaggc ttgggccgtc cggagcaagg
       61 cccaaacgaa aacgcccggt cctgagaccg ggcgtttcgc aaatcggatt gtcgtctgac
      121 tttaggcggc gaccgccttc accagggact tgttgaggat accgatggcg gcgtcgcggt
      181 cgattcgctc gatggcggcg acttcgcggg ccatgcggtc cagggccgat tcgtaaagct
      241 ggcgctccga ataggactgt tccggctggt tctcggctcg gtgcaggtcg cgcaccacct
      301 cggcgatgga gatcaggtcg ccggagttga tcttggcttc gtattcctgg gcccggcggc
      361 tccacatggt gcgcttcacc cgtgcgcggc ccttgagggt cgtcagcgcc tgggtgacga
      421 cattggtttc ggcgagcgcc ctgaggccgg ccgtgcgcgc cttggcggtg ggcacccgca
      481 gggtcatctt ttcgtggtcg aaggtgatca catagacttc cagctgcaga ccggcgactt
      541 cctggacttc gatcccctgc acctgaccga cgccgtgcgc cggatagacg acgtgatcgc
      601 caaccgagaa atcgtgactg gtcttgctca tggagacacc ctctcaaaaa ttgcctggtc
      661 cggactgccg tcgaaccgct gacgcgtagc cgccaaacga caaagccatc ctctccgcga
      721 aaagcgtcgc ggcggcatcg tcggttggag cggagttaga cctcttaaga cacccttcgc
      781 ctgtcgccgg agctatccct catggaccgc gccggaatgg cgtttcatct aagccgatgg
      841 gaaaggcgaa gagcctcaag cgccacatcg tccgtaacga taacataaaa tgaagccgaa
      901 tgaaaggctt gccccggcgg gctgaccgcc acgggatgcc ggacgcaggt gggctcagga
      961 gccgtggccg ggcttctcgg agaagtattt ctcaagcttg ccggtctcgc gctcgaaggc
     1021 ttcggcgtcg gccggcgcct cgcccttgac cgtgatgttc ggccagacgc gggaatattc
     1081 ggagttgatt cgcagccact tgccgtcggc gtcgtcctcg gtgtcgggct tgatggcgtc
     1141 gacggggcac tccggctcgc agacgccgca gtcgatgcac tcgtccggat tgatcgccag
     1201 gaagttctcg ccctcataga agcagtcgac cgggcacacc tccacgcagt ccatgtactt
     1261 acatttgatg caggcatcca tcacgatgta ggtcatggcg ggtggtcgaa actccggcgc
     1321 ggttcccgag gtgtggggcg cgggtttttc acggtccggc ggccggatgt caatgccacc
     1381 agaccacacg gcgcttcgag gaattctcta agccggccga aagagcgtca ggcggcgtcc
     1441 agcttggaat atagggtgcg cgcctcagcg gccgagcctc tgcgctcgcc tagcgcctcg
     1501 atcttcaccg cgatcagctt gccgccgagg gcgaagacca gggcgtcgcc gaccttcagc
     1561 gaacgggcgg gcttgtcgac gcggttttcg tggccggcgc gggtcaggcg gatgcggccc
     1621 tcctcgatga agtcggccgc cagagtgcgg gtcttgaaga agcgcgcgcg ccacagccag
     1681 acgtcggcgc gggtggcttc ggtgggggca ggttcgctca tgggcgtgcg gtcccgatcc
     1741 tgcgccgccg gcggggacgg cgcgcgggcg cgggctctcc cttcagggtg gccagagcgg
     1801 cgaaaggcga gttgggggcg atgatcggac gatgctccag ggaaaagtcg cgctcggcgc
     1861 ggcggcgcca ggccgtggct tcgcccgtgc gcttgaccgc agcatagccc aggcctttga
     1921 ggatttcgcg ggcttcgtca ggcgtccagc ccagcgccgc gcgggcctcg tcggagaaca
     1981 ccaccccgcc gccctgccgc tcgccggcgc gcagcaggtc gtccagccgc tcgagctgtt
     2041 ccaccggaac ggccaggctc cgcacggcgc gcaggccgaa ggccgccagg ccgcgcgggg
     2101 ag
//
LOCUS       DATAJL010000446         1668 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20729,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000446 DATAJL010000000
VERSION     DATAJL010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1668)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1668)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1668
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20729"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..799
                     /locus_tag="VHN39_08560"
     CDS             <1..799
                     /locus_tag="VHN39_08560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816432.1"
                     /translation="LDALLDQGAVALERAEFAAAAAGAEALRRSDRLRSALFNSISHD
                     LRTPLSTVLGSATTLIDFGKSLSAKVRADLLLSIREEAERLNRYVGDLLDMTRLEGGA
                     LTTRREWIDIRDVLREAVERVRRRLEGRKVDRDFPAKLSMVMADASLLEQALVNILEN
                     AIAYSPDGTTIEVAAYEDRGNVVISIEDEGRGIPTNELERVFERFRRMEEATDRGKGA
                     GLGLAISKGFVEAMGGRIAAASPIHDGRGTRILISLPKERVTPEYML"
     gene            796..1485
                     /locus_tag="VHN39_08565"
     CDS             796..1485
                     /locus_tag="VHN39_08565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2816433.1"
                     /translation="MSAHKPRVLVIDDEPQIHRFLGPALDAAGYEHVRADTASDGLRE
                     IARKAPDVVVLDLGLPDMDGKQALEKARTFYKGPIVVLSARDRETEKIDALDLGANDY
                     VEKPFGVGELLARIRAALRHQLQDKGAEPVVTVGDLTVDLVKRLVTRAGVPIHLSPRE
                     YDLLAQLVEGGGKVVTHRQLLTAVWGPAHEQDVQYLRVFVGQLRQKIEPDPAAPGLIL
                     TEPGVGYRWMT"
BASE COUNT          273 a          561 c          577 g          257 t
ORIGIN      
        1 acttgacgcc ctgctcgacc agggcgcggt cgcgctggag cgggcggagt tcgccgccgc
       61 tgcggccggg gcggaggctc tgaggcgctc ggaccgcctg cgctcggcgc tgtttaactc
      121 catcagccac gacctcagaa ccccgctctc gacggtgctg ggctcggcca ccacgctcat
      181 cgatttcggc aagtcgctga gcgccaaggt ccgggccgac ctgctgctct cgatccgcga
      241 ggaggccgag cgcctgaacc gctacgtcgg cgatctgctg gacatgaccc ggctggaggg
      301 cggggcgctg accacccggc gcgaatggat cgatattcgc gatgtgctgc gcgaggccgt
      361 ggagcgggtg cgacggcggc tcgaggggcg caaggtcgac cgcgactttc ccgccaagct
      421 ctccatggtc atggccgacg cctctctgtt ggaacaggcc ctggtcaaca tcctggaaaa
      481 cgccatcgcc tacagccccg acgggaccac catcgaggtg gccgcctatg aggaccgcgg
      541 caatgtggtg atctccatcg aggacgaggg gcgcggtatt ccgaccaacg aactggaacg
      601 ggtcttcgaa cggttccggc gcatggagga agccaccgac cgcggcaagg gcgccggcct
      661 gggccttgcc atctccaagg gtttcgtcga agccatgggc ggacggatcg ccgccgccag
      721 cccgatccac gacggccgcg gcacccgcat cctgatcagc ctccccaagg agcgggtgac
      781 gcccgaatac atgctttgag cgcccacaag ccccgcgtcc tggtgatcga cgacgagccg
      841 cagattcacc ggttcctggg gccggccctg gacgccgccg gctacgagca tgtgcgcgcc
      901 gacactgcca gcgacggcct gcgcgagatc gcccgcaagg cgccggatgt ggtggtcctc
      961 gacctgggtc tgccggacat ggacggcaag caggcgctgg aaaaagcgcg cactttctac
     1021 aaaggcccga tcgtcgtgct gtcggcgcgg gaccgggaga ccgagaagat cgacgccctc
     1081 gacctcggcg ccaacgacta tgtggaaaaa cccttcgggg tcggcgaact cctggcccgc
     1141 atccgcgcgg cgctccgcca tcagctgcag gacaagggcg ccgagccggt ggtcaccgtc
     1201 ggcgacctga cagtggatct ggtcaagcgc ctggtcaccc gcgccggcgt gccgatccat
     1261 ctgtcgccac gtgaatacga cctgctggcc cagctggtcg aaggcggcgg caaggtggtc
     1321 acccaccgcc agttgctgac cgcagtctgg ggcccggccc atgaacagga cgtgcaatac
     1381 ctgcgggtct tcgtgggcca gctccgccag aagatcgagc cggacccggc ggcgccgggg
     1441 ctgatcctga cggagccagg cgtcggctat cgctggatga cctagggggc gttcgtgggc
     1501 ttgtggtcct cgtccatggc tgtgccggtc cgcatcaggg gcgggggtcc ggaatctcga
     1561 acccctgctt gacgcggcgg ctgatggtct tgatggcgtc gaaatcggtg acggggttgg
     1621 ccttgagcgc caggaaactc gcttcatagc cgggcttcag cgccccga
//
LOCUS       DATAJL010000447         2893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93604,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000447 DATAJL010000000
VERSION     DATAJL010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2893
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93604"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..579
                     /locus_tag="VHN39_08570"
     CDS             <1..579
                     /locus_tag="VHN39_08570"
                     /inference="COORDINATES: protein motif:HMM:NF021517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2244 domain-containing protein"
                     /protein_id="HEX2816434.1"
                     /translation="GLGFRGFRGLGHAMRKMAAATPSAKAVSGPIFRASMLGQTYMDA
                     VITPHRSLSDRGFIVLIAVVTVCNCISSAVFVYYGATLVPVFMAFDVLAVIVAFAVSF
                     AGAKRIERVTITARDVVVTHEAPNWTKVVWESPTAFTRVAVEKDEDRTVGLRLAISGK
                     DVAVAQALSPGERADFARALEQAIWEARRERG"
     gene            complement(576..1445)
                     /locus_tag="VHN39_08575"
     CDS             complement(576..1445)
                     /locus_tag="VHN39_08575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4440 domain-containing protein"
                     /protein_id="HEX2816435.1"
                     /translation="MAVLKTILALAAAVLLTTTLLTTTAQAARPADPAPVLAAERAFA
                     ARAAVVGMSPSFLEYMTDDAIIFAPDPLLAKAFYAALPAGKTPKDGGTLLNWWPNFAG
                     VARSGDLGFTTGPATINGKRGLFYFTVWARQPEGGWKWVYDGGIDADGAAAPGPDAAP
                     MTLPPGDPRPVRPDEAMINVGEAEGALAEQAKTDAPAAYKAVLATDARVQGSKLGPAT
                     TPAMVAKELATRAKAIAFGPIGGGASKAGDLVWTYGDARWTGGRGHYVRIWQRRAGKW
                     ALVFDQIIEVEKS"
     gene            complement(1519..2622)
                     /locus_tag="VHN39_08580"
     CDS             complement(1519..2622)
                     /locus_tag="VHN39_08580"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2816436.1"
                     /translation="MTQSWKTTRRSPGVMRVLGCACALVLITATPGLAKPRPQAGAPA
                     ANWADNYLAQLARKGEFSGVVLVSRGGKPVFERAYGQAVAGWNIRNTPATRFEIASLT
                     KQFTGAAILQLAEAGKLELGDSVTRYYPQAPASWAGITIRQLVTHTSGLPNNEIKDFT
                     KGISVPYTPEELIGTFRDRPLVAKPGAVWAYTNTEYYLLAYIIQKVSGQSYADYLSAH
                     IFGPAGMTHSGFASTLAIVPEAAEGYSRDGKALRHRDYFDRSLEQGAGGIYSTVGDMA
                     LWNTALDGGKLLNKESLARMFAPSVPGDYGYGWFITSKPRLREFHEGSDPGFAVFEAR
                     YPETGMLILVFSNLEDAPVRKIESDLAAKFVAP"
     gene            2713..>2893
                     /locus_tag="VHN39_08585"
     CDS             2713..>2893
                     /locus_tag="VHN39_08585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEX2816437.1"
                     /translation="MAFTDAEIERYARHLVLREVGGPGQQKLKAAKALIVGAGGLGSP
                     AALYLAAAGIGTLILV"
BASE COUNT          422 a          978 c         1004 g          489 t
ORIGIN      
        1 gggcttgggt ttcgcgggtt tcgggggctt ggccatgcaa tgcgcaagat ggccgccgcg
       61 accccttccg ccaaggcggt ttccgggcct atcttccggg ccagcatgct cggccagacc
      121 tacatggacg cagtgatcac gccgcatcga tcgctctccg atcggggctt cattgtgctg
      181 atcgccgtgg tgacggtgtg caactgcatc tcctcggcgg tcttcgtcta ctacggtgcg
      241 accctggtgc cggtcttcat ggccttcgac gtcctggcgg tgatcgtcgc cttcgcggtc
      301 tccttcgccg gcgccaagcg gatcgagcgg gtgaccatca ccgcccgcga cgtggtggtc
      361 acccacgaag cgcccaactg gaccaaggtg gtctgggaaa gccccaccgc cttcacccgc
      421 gtggccgtcg agaaggacga ggaccggacc gtcggcctgc gcctggcgat ctccggcaag
      481 gacgtggccg tcgcccaggc gctcagcccc ggcgaacgcg ccgacttcgc cagggccctg
      541 gaacaggcga tctgggaagc ccggcgcgag cggggctagc tcttctcaac ctcgatgatc
      601 tggtcgaaga ccagcgccca cttgccggcg cggcgttgcc agatgcggac atagtggccg
      661 cggccgccgg tccagcgcgc gtcgccatag gtccagacca ggtcgccggc cttggaggcc
      721 ccgccgccga tcgggccgaa ggcgatggcc ttggcgcggg tggccagttc cttggccacc
      781 atcgccggcg ttgtcgctgg accaagcttt gagccctgca cccgggcgtc ggtggctagc
      841 acggccttgt aggctgcggg ggcgtccgtc ttggcctgct cggcgagcgc gccttccgcc
      901 tcgccgacat ttatcatcgc ctcgtccggt cgaacgggcc tgggatcgcc gggcggcagg
      961 gtcatcggcg cggcgtccgg tcccggcgcg gccgcgccgt cggcgtcgat gccgccgtcg
     1021 tagacccatt tccagccgcc ctccggctgg cgcgcccaga cggtgaagta gaagagcccg
     1081 cgcttgccgt tgatggtcgc gggcccggtg gtgaagccga gatcgccgga ccgcgccacg
     1141 ccggcgaagt tgggccacca gttcagcagc gtcccgccgt ccttaggcgt cttgccggcc
     1201 ggcagggcgg catagaacgc cttggccagc agcgggtcgg gggcgaagat gatcgcgtcg
     1261 tcggtcatat attcaaggaa gctcggcgac atcccgacga ccgcggcgcg ggccgcgaag
     1321 gcgcgctcgg cggccagcac cggcgcggga tcggcgggtc tcgcggcctg cgccgttgtc
     1381 gtcagcaggg tcgtcgtcag caggactgcg gcggcgagcg ccaggatcgt cttgagcacg
     1441 gccacggccc cccagatgtc atcctcgcct atgaactagc gcaaggcgtc cgtcgcgggc
     1501 cagagcgacg aaccgtctct agggcgcgac gaacttcgcg gccagatcgg actcgatctt
     1561 gcggaccggc gcatcctcca ggttggagaa caccaggatc aacatgccgg tctcagggta
     1621 gcgagcctcg aagacggcga agccagggtc gctcccctcg tggaattcgc gcagccgtgg
     1681 cttgctggtg atgaaccagc cgtagccgta gtcgccggga accgacgggg cgaacattct
     1741 ggcgagggac tctttgttaa ggagttttcc gccgtcgagg gcggtgttcc acagcgccat
     1801 atcgccgacc gtggaataga tcccgcccgc gccctgctcg aggctgcgat caaaatagtc
     1861 gcggtggcgc agcgcctttc cgtcgcggga atagccctcc gccgcttccg gaacaatcgc
     1921 cagggtggag gcgaacccgg agtgggtcat gccggccggc ccgaagatgt gcgccgacag
     1981 gtagtccgca tagctctgac ctgagacctt ctggatgatg taggccagca ggtagtactc
     2041 ggtgttggtg taggcccaga ccgcgcccgg cttggcgacc agcggccggt cccggaaggt
     2101 gcctatcagc tcctcgggcg tgtaggggac gctgatcccc ttggtgaaat ccttgatctc
     2161 gttgttgggc agccccgagg tgtgggtgac tagctgccgg atggtgatcc ctgcccacga
     2221 cgcgggcgcc tggggatagt agcgggtcac cgaatccccg agctccagct tgccggcctc
     2281 ggccagctgc aggatggccg cgcccgtgaa ttgcttggtg agcgaggcga tctcgaaccg
     2341 tgtcgcaggc gtgttgcgga tgttccaacc ggccacggcc tggccgtagg cacgctcgaa
     2401 caccggcttg ccgccgcgcg agaccagcac cacgccgctg aactcaccct tcctggcaag
     2461 ctgggccaga tagttgtccg cccagttggc cgctggagcg ccagcctgcg gccgcggctt
     2521 cgccagcccc ggcgtcgccg tgatcagcac cagggcgcag gcgcagccga gcacccgcat
     2581 cacccccgga ctgcgccggg tcgtcttcca actctgcgtc aagctttgcc cctgccttgc
     2641 ggttcgttcc gacggcgttc agtttgcgct gttgttgagt gtgggccgac gaacggccga
     2701 ggttcaagcg ccatggcctt cactgacgct gagatcgagc gctacgcccg ccacctggtg
     2761 ctgcgcgagg tgggcgggcc gggccagcag aagctgaaag ccgccaaggc gctgatcgtg
     2821 ggggccggcg gcctgggttc acccgccgcc ctctacctgg ctgccgccgg gatcgggacc
     2881 ctgatcctgg tgg
//
LOCUS       DATAJL010000448         3432 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57903,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000448 DATAJL010000000
VERSION     DATAJL010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3432
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57903"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(143..475)
                     /locus_tag="VHN39_08590"
     CDS             complement(143..475)
                     /locus_tag="VHN39_08590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816438.1"
                     /translation="MMKTVLMGLLATLLLSSSLLVASGAHAAPICVDRHGEMTRCGTP
                     GAMPVGWNLPPDQQRDRLAARSDELSVRQWIGLTVFLAGLFALIALMPDFEGRWDGQE
                     TDEDEERG"
     gene            561..1331
                     /locus_tag="VHN39_08595"
     CDS             561..1331
                     /locus_tag="VHN39_08595"
                     /inference="COORDINATES: protein motif:HMM:NF015297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase/citrate lyase family protein"
                     /protein_id="HEX2816439.1"
                     /translation="MRANRLKEIWAAGKPAIGGWCSMPGSFSAELMANQGWDVVTIDT
                     QHGVIGYSEMLQMLQAISTTDATPLVRVSWNQPGEIMRALDSGAYGVICPMINDAAEC
                     AAFVQACRYPPDGFRSSGPTRAAIYGGADYLAKANGEMLTIAMVETAAGLANVEAIVA
                     TPGLDGVYIGPSDLSLSLGGPPGQDSDAPMLMAAFDKILAACKAAGVRIGVHTASVAY
                     SQKMLGRGFDLVTVGADTRFLMSGRREAAEMRAWLETR"
     gene            1477..1707
                     /locus_tag="VHN39_08600"
     CDS             1477..1707
                     /locus_tag="VHN39_08600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816440.1"
                     /translation="MPNLFWPRALSPDVGASGLIGRTIHWLGVAMAAAFLITAMGFAI
                     DGWSMSDALWLSVIAIVMALATRGVRFLLARE"
     gene            complement(1713..3281)
                     /locus_tag="VHN39_08605"
     CDS             complement(1713..3281)
                     /locus_tag="VHN39_08605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816441.1"
                     /translation="MTGRIWLRLAGACAALGLVAIAGHAAADCPADAPTGLFKGATSG
                     SGPARSEVTLNLACADGKYVAQFFTSASDFGSAEAAGGPGQVNLKLDARARSGTADFK
                     LEGDTLTGTISAGVVHGTVSLARTGPAMALNAMTPTLALTKAQWREDLASFATELPKR
                     HANAFFRQTKPQFEAEVARLDRRIGQLNDDQIFTELQRITNAVGDGHTGIPLPPDRRS
                     LPIHIARFGKDLRVVAAGPGLEKALGARIVRIGSLSADEAWTRALALTAQDELPALQA
                     GRAEDILTRGVLLHGLGIIPDRTHARFVLKDDAGHGFTLDIPGLAPGGTVPLTEMTTG
                     KGLAQENPKDAFWCRDLPEQHAVYCGFRAYDNLGRGRNEMLALIEKAHPGKLIIDMRD
                     NGGGDNTLGYAFLIKPLEAMSDINRKGRLYVLVGALTFSAAMNNAAQFQDETQAILVG
                     EQIGEKPNSYQEPRQFRLPNSHLIVRASSLYYKFREHGPNAVTPDRTIVPSWEDVKAG
                     RDPVLDWVLAQPAA"
BASE COUNT          501 a         1178 c         1188 g          565 t
ORIGIN      
        1 caccagcacc tcgggttcgg cccgcacggc gccggcgagc gcgatggagg cgcccagcgc
       61 caccgccgca agtctgaacc tcatgcccgc ctccaaatca tcccggcttc ggcggcagtt
      121 gaccaccgat gcccggcgag acctagcccc gctcctcgtc ctcgtctgtc tcctgcccgt
      181 cccagcggcc ctcgaaatcc ggcatcagag ctatgagggc gaagagtccg gccaggaaga
      241 cggtcaggcc gatccattgg cgcacgctga gctcgtccga tcgcgccgcc agccggtcgc
      301 gctgctgatc gggcggcagg ttccagccca ccggcatggc gcccggcgtt ccgcaacggg
      361 tcatctcgcc gtggcggtcg acgcagatcg gcgccgcgtg cgcccccgat gcaaccagga
      421 gggaggagct cagcagcaag gtggcgagca ggcccatcag aacggttttc atcatcaaag
      481 cgcctcaagg ctcgcccggt ccgcgcggag tatgccagca tagcggcgct ggcctaagcg
      541 ccacctcacg gagaagacgg atgcgcgcca atcggctgaa ggaaatctgg gcggccggga
      601 agcccgcgat cggcggctgg tgctccatgc cggggtcgtt ctcggccgag ctgatggcga
      661 accagggctg ggacgtggtc accatcgaca cccagcacgg cgtcatcggc tattccgaga
      721 tgctgcagat gctgcaggcg atctccacga ccgacgccac gccgctggtg cgggtgtcct
      781 ggaaccagcc cggcgagatc atgcgggcgc tggattccgg cgcctacggg gtcatctgcc
      841 cgatgatcaa cgacgcggcc gagtgcgcgg ccttcgttca ggcctgccgc tatccgcccg
      901 acggcttccg cagctccggg ccgacccggg cggcgatcta cggcggcgcg gactacctgg
      961 ccaaggccaa cggcgagatg ctgaccatcg ccatggtcga gacggcggcg ggcctggcca
     1021 atgtcgaggc catcgtcgcc acgcccggcc tcgacggcgt ctatatcggc ccctcggacc
     1081 tgtccctgtc gctcggcgga cctcccgggc aggattccga tgcgcccatg ctgatggcgg
     1141 ccttcgacaa gatcctcgcc gcctgcaagg ccgcgggcgt ccggatcggg gtccacaccg
     1201 ccagcgtggc ctattcgcag aagatgctcg ggcgcggctt cgacctggtc accgtgggcg
     1261 ccgacacccg cttcctgatg agcggccggc gcgaggccgc cgagatgcgc gcctggctgg
     1321 agacccgctg acgggcaggc cgtccccgaa attgcttcat tccacggcaa cgggttcgaa
     1381 aggctgtgcg ttctaggctc agccgccgaa agccggccag gggtgtgcga aagctcaagc
     1441 tctggccagc caggccagcc gtgcgggagc aagtccttgc cgaacctctt ctggcctcgc
     1501 gccctgagcc ccgacgtcgg ggcctccggt ctgatcggac gcaccattca ctggctggga
     1561 gtcgccatgg cggctgcttt cctgatcacc gccatgggtt tcgccatcga cgggtggtcg
     1621 atgtcggacg cgctctggct gtcggtcatc gccatcgtca tggcgctggc cacccgcggc
     1681 gtacgcttcc tgctcgcccg ggaatagccg ccctaagcgg ccggctgggc cagcacccag
     1741 tccagcaccg gatcgcggcc agccttcacg tcttcccagc tcggaacgat cgtcctgtcg
     1801 ggcgtgaccg cgttggggcc atgttcgcgg aacttgtaat agaggcttga ggcccgcacg
     1861 atcaggtggg agttgggcag gcggaactgc cgcggctcct ggtaggaatt gggcttctcg
     1921 ccgatctgct cccccaccag gatcgcctgg gtttcgtcct ggaactgggc ggcgttgttc
     1981 atcgccgccg agaaggtgag cgcgcccacc agcacataga gccggccctt gcggttgatg
     2041 tcggacatcg cctccagcgg cttgatcagg aaggcataac ccagggtgtt gtcgccgccg
     2101 ccgttgtcgc gcatgtcgat gatcagcttg ccggggtggg ctttctcgat cagggccagc
     2161 atctcgttgc gcccacgccc caggttgtcg taggcgcgga agccgcagta gaccgcgtgc
     2221 tgttcgggca ggtcgcggca ccagaaggcg tccttggggt tctcctgcgc caggcccttg
     2281 ccggtggtca tctcggtcag cgggaccgtg ccgccgggcg ccaggccggg aatatccagg
     2341 gtgaagccgt ggccggcgtc gtccttcagg acgaagcgcg catgggtccg gtcggggatg
     2401 atccccaggc cgtgcagcag cacgccgcgg gtcaggatgt cctccgcccg acccgcctgc
     2461 agcgccggca gttcgtcctg tgcggtgaga gccagcgccc gcgtccaggc ctcatcggcc
     2521 gacaggctgc cgatgcggac gatccgcgcg cccagcgcct tttccaggcc tgggccggcc
     2581 gccacgacgc gcaggtcctt tccgaagcgg gcgatatgga tcggcaggct gcggcggtcc
     2641 ggcggcaggg gaatgcccgt gtgcccgtcg cccaccgcat tggtgatgcg ctgcagctcg
     2701 gtgaatatct ggtcgtcgtt gagctggccg atccgccggt cgagtcgcgc gacctcagcc
     2761 tcgaactgcg gcttcgtctg gcggaagaag gcgttggcgt gccgcttggg cagctcggtg
     2821 gcgaagctcg ccaggtcctc gcgccactgg gcctttgtca gggccagggt gggagtcatg
     2881 gcgtttagcg ccatcgcggg tccggtgcgg gcaagagaca ctgtgccatg cacaacgccg
     2941 gctgagatgg ttcccgtgag cgtatcgccc tcgagcttga agtccgcggt tccggaccgg
     3001 gcgcgcgcgt cgagcttcag gttgacctgg ccggggccgc ccgcggcctc ggctgagccg
     3061 aagtccgacg ccgaggtgaa gaactgggcg acatatttgc cgtcggcgca ggcgaggttc
     3121 agcgttacct ccgaccgtgc ggggccgctt ccgctggtgg cgcccttgaa gaggcccgtc
     3181 ggcgcatcgg cggggcagtc ggccgcggcg tggcccgcga tcgcgaccaa cccaagggct
     3241 gcgcaggcgc ctgcgagccg tagccaaatc ctgccagtca tcgggcggtc tccccgccgg
     3301 tgactatgga tcgcggctcg tcgcgggacc cgtgaattcg gggtaatgcg ccggaggcta
     3361 cttcttcgcc ggcgccgcgg ccttggagct gaactccgtt tcgatggcca gatcgacgtc
     3421 gtcgccaacg cc
//
LOCUS       DATAJL010000449         3770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_7915,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000449 DATAJL010000000
VERSION     DATAJL010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3770
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7915"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1301
                     /locus_tag="VHN39_08610"
     CDS             <1..1301
                     /locus_tag="VHN39_08610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sigma-54 dependent transcriptional regulator"
                     /protein_id="HEX2816442.1"
                     /translation="LVEMRARSFNQPVIVVTATGGIDTVVQAMQAGALDFFIKPAAPE
                     RIIVSIRNALSMGALRGEVDRLKKHATGRTSFGDLIGGSPAMTMVKRLGERAAGSSIP
                     ILITGESGVGKEVIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGAT
                     DKHLGKFQEANGGTLFLDEVGELPLDIQVKLLRALQESEIDAVGGKRPIKVDVRIVSA
                     TNRDLSLAVKEGRFREDLFYRLNVFPIEAPALRDRKEDVPALVDCFVKRFNIEEGKSV
                     VGATPETMAYLAAFDWPGNVRQLENAVYRAIVLADAPYLQPHDFPAISGVAPPAMAAE
                     PTSFIGAPPSAAQLMPDLPAAVSVRILDERGHLRTLEEIERDLIQLAIEIYAGHMSEV
                     ARRLGIGRSTLYRKVREQGLEDVIKGTGHDANEDADAQVA"
     gene            1474..2367
                     /locus_tag="VHN39_08615"
     CDS             1474..2367
                     /locus_tag="VHN39_08615"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2816443.1"
                     /translation="MCDDEIHQFEGTILATETPISRRAFGLSAAAAAGLAATVSASMA
                     HAQATVTEKDVDIKTADGVCDAALFYPSGKGKWPAVLIWTDIGGLRPVFRDMGRRLAA
                     QGYVVLVPNPFYRGGRAPGVTEGLDFAKAEDRPKFMKLAGGISGPGAVETDAPAFLAF
                     LDAQPQTDKKKKAGTQGYCMGGPLVYRTAAVAPDRIGAAVTCHGGGLVTATPASPHLL
                     IPKMKAEIYSAVAANDDQRAPTDKDVLKKAFADAGKTARVEVYDGCNHGWCVKGSAVY
                     NEAGAERAWTELTALYKKKLV"
     gene            complement(2364..3083)
                     /locus_tag="VHN39_08620"
     CDS             complement(2364..3083)
                     /locus_tag="VHN39_08620"
                     /inference="COORDINATES: protein motif:HMM:NF040370.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816444.1"
                     /translation="MTVRIAMWSGPRNISTAMMRSFENRGDGAVVDEPFYAAYLAATG
                     LDHPMREAVLASQARDWRAVARGLIADDPAPVFYQKHMTHHMAPGFGLDWTASCRNAF
                     LIRDPAEVLASYVKKRAEVTLEDIGVVRQHELFDREADRLGHAPPVVEGADVLADPRG
                     LLTALCAALDIPFDDAMLSWPAGRRESDGVWAPAWYEAVERSTGFEAPGRAAAAPLTD
                     DLRRIADQARPHYAALARFKL"
     gene            complement(3080..3622)
                     /locus_tag="VHN39_08625"
     CDS             complement(3080..3622)
                     /locus_tag="VHN39_08625"
                     /inference="COORDINATES: protein motif:HMM:NF013247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEX2816445.1"
                     /translation="MITAEYKTPSPAIVTQGLSLFTSSIRCSPEEMFDMRLNSHSRLN
                     LITALLEAIKAGADEAVMLDPGGHVSSCNATNLFWVGEGKVWTSSGQFCFNGVTRANV
                     IALCEANSIPIEQGHFPLASLRGADEAFVTGTFGGLTPVREVDGHVLPAALPGPVTTR
                     LRALYEALKDADAGKGGAAR"
     gene            3519..>3770
                     /locus_tag="VHN39_08630"
     CDS             3519..>3770
                     /locus_tag="VHN39_08630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816446.1"
                     /translation="MSNISSGEHRIDEVKSDNPWVTIAGDGVLYSAVITMVGFPSQLR
                     GSWLAAANGMTDGAHLRLMVTRGEKAAAHQDPRNWLGKPT"
BASE COUNT          625 a         1407 c         1219 g          519 t
ORIGIN      
        1 ccctggtcga gatgcgggcg cgcagcttca accagccggt catcgtggtc accgccaccg
       61 gcggcatcga caccgtcgtg caagccatgc aggccggtgc gctcgacttc ttcatcaagc
      121 ccgccgcgcc cgagcggatc atcgtctcca tccgcaacgc cctttccatg ggcgccctgc
      181 gcggcgaggt cgaccggctg aagaagcacg ccaccgggcg caccagcttt ggcgacctga
      241 tcggcggatc gcccgccatg accatggtca agcggctggg cgagcgggcc gccgggtcct
      301 cgatcccaat cctgatcacc ggcgaaagcg gcgtcggcaa ggaagtcatc gcccgcgccg
      361 tccacggctc ctccgaccgc gccggcaagc ccttcgtggc cgtcaactgc ggcgccatcc
      421 ccgaaaacct cgtggagtcg atcctgttcg gccacgagaa gggcagcttc accggcgcca
      481 ccgacaagca cctgggcaag ttccaggagg ccaacggcgg caccctcttc ctcgacgagg
      541 tgggcgagct tcccctcgac atccaggtca agctgctgcg cgccctgcag gagagcgaga
      601 tcgacgcggt cggcggcaag cgcccgatca aggtcgacgt gcgcatcgtc tcggccacca
      661 accgcgacct cagcctcgcc gtgaaggaag gccgcttccg cgaggacctc ttctatcgcc
      721 tgaacgtctt ccccatcgag gccccggcgc ttcgcgaccg caaggaagac gtgccggccc
      781 tcgtcgactg cttcgtgaaa cggttcaaca tcgaggaagg caagtccgtg gtcggcgcga
      841 cgccggagac catggcctat cttgccgcct tcgactggcc gggcaacgtc cgccagctgg
      901 aaaacgcggt ctatcgcgcc atcgtcctgg ccgacgcgcc ctacctccag ccgcacgact
      961 tcccggcgat ctcgggcgtg gccccgcctg ccatggcggc ggagcccacc agcttcatcg
     1021 gcgcgccgcc cagcgcggcc cagctcatgc cagacctgcc ggccgccgtg tcggtccgga
     1081 tcctcgacga gcgcggccac ctgcgcacgc tggaggagat cgagcgcgac ctcatccagc
     1141 tcgccatcga gatctacgcc ggccacatga gcgaagtcgc gcggcgcctc ggcatcggcc
     1201 gctcgacgct ttatcgcaaa gtccgcgaac agggcctgga agacgtgatc aaggggacgg
     1261 gccatgacgc caacgaagac gccgacgcgc aggtcgcgtg aggccccctc ccgcgagcag
     1321 cggctcgcgg ccctgatgcg gctggccaag ctcgccggac ggaagatcag ggtcgcctga
     1381 ccaccgcctc cccgtcagga gcttccatcg cggaaataac gccgtaacat tggcgccgac
     1441 ccttcaggtc caaatcctcg ggaggcagct cacatgtgcg acgacgaaat ccatcaattc
     1501 gagggcacta tcctcgcgac cgagaccccg atatcccgcc gcgccttcgg tctatccgcc
     1561 gcggccgccg ccggtctggc ggccaccgtc tcggcgagca tggcgcacgc ccaggccacg
     1621 gtcaccgaga aggacgtcga catcaagacg gccgacggcg tctgcgacgc cgccctcttc
     1681 tatccctcag gcaagggcaa gtggcccgcc gtgctgatct ggacggacat cgggggcctg
     1741 cgccccgtct tccgcgacat gggccgacgg ctcgccgccc agggctatgt ggtgctggtg
     1801 cccaatccct tctaccgcgg cggccgcgcg cccggcgtca ccgagggcct cgatttcgcc
     1861 aaggccgagg accggccgaa gttcatgaag ctggcgggcg ggatcagcgg cccgggcgcc
     1921 gtggagaccg acgcgccggc cttcctcgcc ttcctcgacg cccagccgca gaccgacaag
     1981 aagaagaagg ccggaaccca gggctattgc atgggcggcc cgctggtcta ccgcacggcc
     2041 gcggtcgcgc cggaccggat cggggcggcc gtcacctgcc acggcggcgg cctggtcacc
     2101 gccacgccgg ccagccccca cctgctgatc cccaagatga aggccgagat ctattccgcc
     2161 gtcgccgcca acgacgacca gcgcgccccc accgacaagg acgtactgaa gaaggccttc
     2221 gccgacgccg gcaagaccgc ccgcgtcgag gtctacgacg gctgcaacca cggctggtgc
     2281 gtaaagggca gcgccgtcta caacgaagcc ggcgccgagc gcgcctggac ggaactcacc
     2341 gcgctctaca agaagaagct cgtctagagc ttgaaccgcg ccagcgccgc gtagtgcggt
     2401 cgcgcctggt cggcgatcct cctgaggtcg tcggtcaggg gcgccgccgc cgcgcgaccg
     2461 ggcgcctcga accccgtcga gcgctcgacg gcctcgtacc aggccggcgc ccagacgcca
     2521 tcgctctcgc gccgcccggc cggccagctg agcatcgcgt cgtcgaaggg aatatccagc
     2581 gccgcgcaca gcgcggtgag caggccgcgc ggatcggcca gcacatcggc gccctcgacc
     2641 accggcggcg catggcccaa ccggtcggcc tcgcggtcga acagttcgtg ctggcggacc
     2701 acgccgatgt cctccagcgt cacctcggcg cgctttttca cataggaggc caacacctcc
     2761 gccggatcgc ggatcaggaa ggcgttgcgg cacgacgccg tccagtcgag cccgaagccc
     2821 ggcgccatgt ggtgggtcat gtgcttctgg tagaagaccg gcgccggatc gtccgcgatc
     2881 agaccgcgcg cgaccgcccg ccagtcccgg gcctgcgaag ccagcaccgc ctcccgcatg
     2941 gggtggtcca gccccgtcgc ggcgagatag gcggcgtaga acggctcgtc caccaccgcg
     3001 ccgtcgcccc ggttctcgaa cgaccgcatc atcgccgtcg agatattgcg cggccccgac
     3061 cacatggcga tccgcaccgt catcgcgcgg cgcccccttt gcccgcgtcg gcgtccttca
     3121 gcgcctcgta gagcgcccgc aaccgggtcg tcaccggccc cggaagggcc gccggcagga
     3181 cgtggccgtc cacctcgcgg accggcgtca ggcccccgaa ggtgccggtg acgaaggcct
     3241 cgtcggcgcc gcgcaggctg gccaacggga aatgcccctg ctcgatgggg atcgaattgg
     3301 cttcgcagag cgcgatgaca ttggcccgcg tcaccccgtt gaagcagaac tgtccggacg
     3361 aggtccacac cttgccctca cccacccaga acaggttggt ggcgttgcag ctggagacat
     3421 ggccgccggg gtccagcatc accgcctcgt ccgccccggc cttgatcgcc tccagcagcg
     3481 ccgtgatcag gttcaggcgg gagtgtgagt tcaaccgcat gtcgaacatc tcttccggcg
     3541 agcatcggat cgatgaggtg aagagcgaca atccctgggt cacgatcgcc ggcgacgggg
     3601 tcttgtactc cgcggtgatc acgatggtgg gcttccccag ccagttgcgc ggatcctggt
     3661 tggcggcggc caacggcatg accgacggcg cgcacctgcg cctgatggtg acgcgcggcg
     3721 agaaggccgc cgcccaccag gatccgcgca actggctggg gaagcccacc
//
LOCUS       DATAJL010000450         8813 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20764,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000450 DATAJL010000000
VERSION     DATAJL010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8813
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20764"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..831
                     /locus_tag="VHN39_08635"
     CDS             <1..831
                     /locus_tag="VHN39_08635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HEX2816447.1"
                     /translation="IKADVENAQPGQAKAPAAASAGQPSAAPATAAAPRQVQSLEQMG
                     IAPGSYDLIPLDGMRKTVARRMTDSFRDVPHFPLSIDLEIDALLAARAKINAMLEKSG
                     GKVSVNDMVIKAAAVALMQVKEANASYTPEGIAMHHHADIAMAVAVPGGLITPIIRAA
                     ETKGLAAIAAEAKDLAERARTKKLKPEEFQGGTFSVSNLGMFGIKSFASIINEPQGAI
                     MSVGVGEKRPVVRGNELAIATVMTVTLTCDHRVVDGATGARFLAAFKPLIEDPITMII
                     "
     gene            842..1318
                     /locus_tag="VHN39_08640"
     CDS             842..1318
                     /locus_tag="VHN39_08640"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004602 - glutathione peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0043295 - glutathione binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEX2816448.1"
                     /translation="MSIYDFSAETLDGQPAPLSAYADKVVLIVNTASKCGFTPQYAGL
                     EALYRKYKDRGFVVLGFPCNQFGAQEPGDAAEIANFCSLTYDVDFPMMRKIDVNGPAT
                     HPLYAWLKHARKGLLGSEGVKWNFTKFLVDRKGEVVKRFAPTDTPQSLEGAVEALL"
     gene            1318..2739
                     /gene="lpdA"
                     /locus_tag="VHN39_08645"
     CDS             1318..2739
                     /gene="lpdA"
                     /locus_tag="VHN39_08645"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEX2816449.1"
                     /translation="MAAETKQESFDVIIIGSGPGGYVTAIRASQLGMKVAIVERELLG
                     GVCLNWGCIPTKALLKSGEVYEQLDHLADYGLSVEKRGFDFDKVVQRSRKVSAQLNAG
                     VAFLMKKHKVEVVEGTATLTKGSPAPSVVVALKAGGSRTLTAKSVIVATGARARTIPA
                     IGLEPDGERVWTYREALVPKSAPKSLIVIGSGAIGLEFASFFRALGSDVTVIEALPRI
                     LPVEDEEVSKAAHKAFEKRGLKFRVPANVKKLTTTKTGVAVEIEAGGKSETLEADVAI
                     VAVGIVGNVEDLGLEALGAKIERTHIVTDSHGATGVPGLYAIGDVAGPPWLAHKASHE
                     GVHCIEHIAGLKPTNIESPIPGCTYSTPQIASVGLTEAQAKEQGREPKVGRFPFRVNG
                     KAIASGELDGFVKTVFDGKTGALIGAHMIGAEVTEMIQGYVIAMTCEATEAELQGAVF
                     PHPTMSEAMHEASLDAFGMVLHI"
     gene            complement(2744..4300)
                     /locus_tag="VHN39_08650"
     CDS             complement(2744..4300)
                     /locus_tag="VHN39_08650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2816450.1"
                     /translation="MSASFDAKRAKTTLFDALVEARQTYGAKKPILEDQERNPLSYTD
                     LIRAAFALGRKIAGFTKVGERVGVMLPSSVGGVVTFFALHAFGRVPTMLNFTAGIRNL
                     KAACELAHVKTVLTSHRFVEQGKLHDLIDALETLTSVVYLEDVRRTVGLTDKLFAAAA
                     GAFPAQFRVATKPDAPGVILFTSGSFGAPKGVVLSQANLIANCRQIAQHIALDPDWVF
                     FNPLPIFHCFGLTGGALLPILTGLKAFQYPSPLHIKQIPTLVKDTKANVLFATDTFIN
                     QYARSAAPDELSGLTFVVCGAEKVRDETHNLINEKFGPIPLLEGYGATEASPVIAVNI
                     PSDNRRGTVGALLPGVETKLVPVPGIPGGGQLYVRGPNVMTGYLNAAGGVDPPVDGWH
                     DTGDVVSITDDGWVKIKGRVKRFAKVGGEMVSLTAAEDLACAVWPEGRHAVIALPDPK
                     KGERLILVTDRQDADATALIAHAQSIQAPEIAVPRKIIRVPEIPVLGTGKTDYVAIQR
                     MVDAELERAA"
     gene            4445..5410
                     /gene="lipA"
                     /locus_tag="VHN39_08655"
     CDS             4445..5410
                     /gene="lipA"
                     /locus_tag="VHN39_08655"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEX2816451.1"
                     /translation="MAVVIDNLKGAIRPRHPEKQANPETPLLRKPEWLRVRAPGSAGY
                     NATRDIVKAHGLVTVCEEAACPNIGECWSKSHATMMIMGEVCTRACAFCNVATGKPQA
                     LDPTEPARVGDAVAKMGLKHVVITSVDRDDLADGGAGHFAAVVRAIRLAAPGTTIEIL
                     TPDFLRKPVEAAFEVIDAKPDVFNHNLETVPRLYLSIRPGARYYHSLRLLERVKERDP
                     TQFTKSGVMVGLGETKEEVMQVMDDMRSAGVDFITIGQYLQPTRKHAPIDRFVHPDEF
                     HAYEEIARAKGFLMVAASPLTRSSHHAGEDFARLQTARTARDAAA"
     gene            5436..5891
                     /locus_tag="VHN39_08660"
     CDS             5436..5891
                     /locus_tag="VHN39_08660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2816452.1"
                     /translation="MKHHVSKQLPYAPNQLFALVGDVMAYPDFVPWITSMRTWNARAL
                     GEDVETVDAEAGIGFSFLKERFSSRVRRDGAARRIDVTLLSGPFKRLANRWEFCAAED
                     GGTRVEFDIDFQFKSRLLEALLTANFAHAVDRLMICFEDRAQALYGTVA"
     gene            6012..6485
                     /locus_tag="VHN39_08665"
     CDS             6012..6485
                     /locus_tag="VHN39_08665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816453.1"
                     /translation="MFWKVYAVFYLVLIVLGLPPALNRLPHMSPIDLVDMIVFTPVAL
                     AGLWSVAFRHISLPTNTWKVLLFVSVFWRAIAVGNAILFGDIVPRLQTGLHAYAARMD
                     PVYSPVMLYGGLVIAFLAGAFLTLPPLIGLYRNAYGNESLLRLMYSPMRSRQTVA"
     gene            complement(6465..6956)
                     /locus_tag="VHN39_08670"
     CDS             complement(6465..6956)
                     /locus_tag="VHN39_08670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003165128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEX2816454.1"
                     /translation="MFSLEIVTLARLLVDEARERSLRIVTAESCTGGLVAGAICMVSG
                     ASDVFERGFVTYSNRAKQELLGIPGDLIADLGAVSEPVARMMAEGALENSNAHIAVAI
                     TGVAGPGGGTPMKPVGTVHIATARTNHGLMHRQEFFELEDREGIQLAAVQSALQMLRD
                     RLT"
     gene            7123..>8813
                     /locus_tag="VHN39_08675"
     CDS             7123..>8813
                     /locus_tag="VHN39_08675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine synthase"
                     /protein_id="HEX2816455.1"
                     /translation="MTVFASAALVFLVEPMVAKLVLPRLGGSPSVWNTSLAFFQAALL
                     AGYGYAHLLQRLRSLRAQAFAHGAALLLAAIALPLRINELVGPPSSNHPTLWLLGVLA
                     VSIGAPFAVLSATAPLVQAWHARTFGDGEGKEPYVLYAASNLGSLLALLAYPLIVEPG
                     LTLHAQRFGWSGGYVAFAVLMAVLAFTVIRAGGVGDVAAPVRQAPSDAAPIGWRDRLT
                     WVVLAAIPSSLMLGVTTYITTDIASAPFLWVVPLALYLLTFIIAFQARPAIPRDVTLL
                     LQAAAVAACAAVLPFGANSLALLMPIHLAAFFLTALMCHQALVARRPDPARLTEFYFW
                     MSLGGVIGGSFNAFLAPVIFDNVWEYPLVLVLSCLVRPWGNWKIEPFAWAMLIVGVAG
                     GVATPILNSLVEPHVLAKPIFGGFTQMDAFSLGVRVCLGAGVISAFLIRSRAVLFFVI
                     IAVLSVGAQAAADQTATKQSWRSFFGVLRQSVTDVPAIGGPVRMLSHGTTLHGAQAAD
                     PRWRCNPLVYYATTTPIGQVFLAQQREKPAMRIGAVGLGTGSVSAYVRAHDQLTF"
BASE COUNT         1403 a         3072 c         2869 g         1469 t
ORIGIN      
        1 atcaaggccg acgtggagaa cgcccagccc ggccaggcca aggctccggc cgcagcgtcg
       61 gctggccagc cctccgccgc tccggcgacc gccgcggcgc cgcgccaggt ccagtccctg
      121 gagcagatgg gcatcgcgcc cggcagctac gacctcatcc cgctcgacgg catgcgcaag
      181 accgtcgcgc ggcggatgac cgacagcttc cgcgatgtgc cgcatttccc gctctccatc
      241 gacctggaga tcgacgccct cttggccgcg cgggccaaga tcaacgccat gttggaaaag
      301 tccggcggca aggtcagcgt caacgacatg gtgatcaagg ccgccgccgt ggccctgatg
      361 caggtgaagg aagccaacgc ctcctacacc cccgaaggca tcgcgatgca ccaccacgcc
      421 gacatcgcca tggcggtcgc ggtccccggc ggcctgatca ccccgatcat tcgcgccgcg
      481 gagaccaagg gcctggccgc catcgcggcc gaagccaagg acctggccga acgcgcccgg
      541 acaaagaagc tgaaacccga ggagttccag ggcggcacct tctcggtctc caacctcggc
      601 atgttcggca tcaagtcctt cgcctcgatc atcaacgagc cgcagggggc gatcatgtcc
      661 gtgggcgtgg gcgagaagcg gcccgtggtg cgcggcaatg agctcgccat cgcgaccgtc
      721 atgaccgtca ccctcacctg cgatcaccgg gtcgtggacg gggcgacggg cgcgcggttc
      781 ctggcggcct tcaagccgct gatcgaagac ccgatcacca tgatcatctg aggggcgcgc
      841 catgagcatc tacgacttca gcgccgagac cctggacggc cagccggcgc cgctctcggc
      901 ctatgccgac aaggtggtcc tgatcgtcaa cacggcgtcc aagtgcggtt tcactccgca
      961 gtacgcgggt ctggaggcgc tttaccgcaa gtacaaggac cgcggcttcg tcgtgctggg
     1021 cttcccctgc aaccagttcg gcgctcagga gccgggcgac gcggccgaga tcgccaactt
     1081 ctgttcgctc acctacgacg tggacttccc gatgatgcgg aagatcgacg tcaacggccc
     1141 ggcgacacac ccgctctacg cctggctgaa gcacgccagg aagggcctgc tgggctccga
     1201 gggcgtgaag tggaacttca ccaagttcct ggtggatcgg aaaggtgagg tggtgaagcg
     1261 cttcgctccc accgacacgc cgcagtcgct ggaaggcgcc gttgaggcgc tgctctgatg
     1321 gccgccgaaa ccaagcaaga aagcttcgac gtcatcatca tcggctcggg cccgggcggc
     1381 tatgtcaccg ccatccgcgc cagccagctc ggcatgaagg tcgccatcgt ggagcgcgag
     1441 ctcctgggcg gcgtctgcct gaactggggc tgcatcccca ccaaggcgct cttgaagtca
     1501 ggcgaggtct acgaacagct cgaccatctg gccgactatg gcctgtcggt ggagaagcgc
     1561 ggcttcgatt tcgacaaggt ggtgcagcgg tcgcgcaagg tttccgccca gctcaacgcc
     1621 ggcgtcgcct tcctgatgaa gaagcacaag gtcgaggtgg tcgaggggac ggcgacgctg
     1681 accaagggga gcccggcgcc gagcgtcgtg gtggccctga aggccggcgg ctcgcgcacg
     1741 ctcaccgcca agagcgtcat cgtcgccacc ggcgcacgcg cccgcaccat cccagccatc
     1801 ggcctggagc cggacggcga gcgggtctgg acctaccgcg aggcgctggt ccccaagtcg
     1861 gcgcccaaga gcctgatcgt catcggctcc ggcgccatcg gcctggagtt cgcaagcttc
     1921 ttccgggccc tgggttcgga cgtgaccgtt atcgaggccc tgccgcgcat cctgccggtg
     1981 gaggacgagg aggtctccaa ggccgcccac aaggccttcg aaaagcgcgg cctgaagttc
     2041 cgcgtgccgg ccaacgtcaa gaagctgacc acgaccaaga ccggcgtggc cgtcgagatc
     2101 gaggccggcg gcaagtccga gaccctggag gccgacgtgg ccatcgtcgc ggtcggcatc
     2161 gtcggcaatg tcgaggacct gggcctggag gcgctgggcg ccaagatcga acgcacccac
     2221 atcgtcaccg acagccatgg cgccaccggc gtccccgggc tctacgccat cggcgacgtg
     2281 gccggcccgc cgtggctggc gcacaaggcg tcgcacgagg gcgtccactg catcgaacac
     2341 atcgcgggcc tgaagccgac caacatcgaa agcccgatcc ccggctgcac ctattccacg
     2401 ccgcagatcg cctcggtggg cctcaccgaa gcccaggcca aggaacaggg ccgcgagccc
     2461 aaggtcggcc gcttcccgtt ccgggtgaac ggcaaggcca tcgcgtccgg cgaactcgac
     2521 ggcttcgtga agacggtctt cgacgggaag accggcgcgc tgatcggcgc ccacatgatt
     2581 ggcgccgagg ttaccgagat gatccaaggc tacgtcatcg ccatgacctg cgaggccacc
     2641 gaggccgaac tccagggcgc cgtcttcccg catccgacca tgagcgaggc catgcacgag
     2701 gcctccctcg acgccttcgg gatggtcctg cacatctgag ggctcaggcc gcccgctcca
     2761 gctccgcatc gaccatccgc tggatggcga catagtcggt tttgccggtg cccagcaccg
     2821 ggatctccgg cacgcggatg atcttccggg gcacggcgat ctccggcgcc tggatggact
     2881 gggcgtgggc gatcagggcg gtcgcgtcag cgtcctggcg gtcggtgacc aggatcaagc
     2941 gctcgccctt cttgggatcg ggaagcgcga tcaccgcgtg gcggccctcg ggccagacgg
     3001 cgcaggccag atcctcggcg gcggtcaggg agaccatctc gccgcccacc ttggcgaagc
     3061 gcttcacccg gcccttgatc ttcacccatc cgtcgtcggt gatggagacg acatcgccgg
     3121 tgtcgtgcca gccgtccacc ggcgggtcga cgccgccagc ggcgttaagg tagccggtca
     3181 tcacattcgg cccgcgcacg tagagctggc cgccgccggg aataccggga accggcacga
     3241 gctttgtctc cacgccgggc agcagggcgc cgaccgtgcc acggcggttg tccgaaggaa
     3301 tgttcaccgc gatcaccggg gaggcttcgg tggcgccgta gccctccagc agcgggatcg
     3361 ggccgaactt ctcattgatc aggttgtggg tctcgtcgcg caccttctcg gcgccgcaga
     3421 ccacgaaggt caggccggaa agctcgtcgg gcgcggccga gcgggcgtac tggttgatga
     3481 aggtgtccgt ggcgaacagc acattggcct tggtgtcctt caccagggtc gggatctgct
     3541 tgatgtgcag gggcgagggg tactggaaag ccttcagtcc cgtcaggatc ggcaacagcg
     3601 cgccgcccgt cagaccgaag caatggaaga tcggcagggg gttgaagaac acccagtcgg
     3661 ggtcgagcgc gatgtgctgg gcgatctggc ggcaattggc gatcaggttc gcctggctca
     3721 gcaccacgcc cttcggcgcg ccgaagctgc cggaggtgaa aaggatgacg ccgggggcat
     3781 cgggctttgt cgcgacccgg aactgagcgg ggaaagcgcc cgccgcggcg gcgaacagtt
     3841 tgtccgtcag gccgacggtg cggcgcacgt cttccagata gacgacgctc gtcagggttt
     3901 cgagcgcatc gatgagatcg tgcagtttgc cctgctccac gaaccggtgg gaggtcagca
     3961 cggtcttcac gtgggccagc tcgcaggccg ctttcaggtt ccggatgccg gccgtgaaat
     4021 tcagcatggt cggcacacgg ccaaacgcat gcagcgcgaa gaaggtcacc acgccgccga
     4081 cgctggacgg cagcatgacc cccacgcgtt cgccgacctt ggtgaagccc gcgatcttgc
     4141 ggcccagcgc gaaggcggcg cggatcaggt cggtgtagct cagggggttg cgttcctgat
     4201 cctccaggat cggcttcttg gcgccatagg tctggcgggc ctccaccagg gcgtcgaaca
     4261 gggtcgtctt cgcccgcttg gcgtcaaaag aagccgacaa acccaccacc tccccaagcc
     4321 ttatcgttgg ggcaagccta tcggctggct cagcggatgc aaagattggt tacagagcgt
     4381 gatctgaagg ctccgcgcca tttcgcggct tgatccggag cccccgaccg ccgatctagg
     4441 gaccatggcc gtggtcatcg acaatctgaa gggcgcgatc cgcccccgtc atccggaaaa
     4501 gcaggcgaac ccggagacgc cgctgctgcg caagcccgag tggctgcgcg tccgcgcgcc
     4561 gggctcggcc ggctacaacg ccacccgcga catcgtgaag gcccatggtc tggtcacggt
     4621 ctgcgaggag gcggcctgcc cgaacatcgg tgagtgctgg tcgaagagcc acgccaccat
     4681 gatgatcatg ggcgaggtgt gcacgcgggc ctgcgccttc tgcaacgtcg ccaccggcaa
     4741 accccaggcg ctcgacccta ccgaaccggc ccgcgtcggc gacgccgtgg ccaagatggg
     4801 gctcaagcac gtggtgatca cctcggtaga ccgcgacgac ctggccgacg gcggggcagg
     4861 gcacttcgcc gccgtggtcc gcgctatccg acttgccgcc cccgggacga ccatcgagat
     4921 cctgacgccg gatttcctgc gcaagcccgt cgaggccgcg ttcgaggtga tcgacgccaa
     4981 gcccgacgtc ttcaaccaca acctggagac tgttccgcgg ctctacctct cgatccgccc
     5041 gggcgcccgc tactaccatt cactccggct gcttgagcgg gtgaaggagc gcgatccgac
     5101 ccagttcacc aagtccggcg tcatggtggg tctcggggag accaaggaag aggtcatgca
     5161 ggtgatggac gacatgcgtt cggccggcgt cgacttcatc accatcggcc agtacctcca
     5221 gcccacgcga aaacacgcgc ccatcgaccg cttcgtccat cccgacgaat tccacgccta
     5281 cgaggagatc gcgcgcgcca agggcttcct gatggtggcc gcgagcccgc tcacccgctc
     5341 ctcgcaccac gccggcgagg acttcgcccg cttgcaaacc gcccgcaccg cccgggacgc
     5401 ggcggcctga gccccggaat gcccgaggga ctggtttgaa gcaccacgtc tccaaacagt
     5461 tgccctatgc gccaaaccag ctcttcgccc tggtcggcga tgtcatggct taccccgatt
     5521 tcgtgccctg gatcaccagc atgcgcacct ggaacgcgcg agcgctcggc gaggatgtgg
     5581 agaccgtgga cgctgaggcc ggcataggtt tttccttcct gaaggagcgg ttttcctccc
     5641 gggtccgacg cgacggcgcg gcgcgccgga tcgacgtcac cctgctgtcg gggcccttca
     5701 agcgcctggc taaccgctgg gagttctgcg cggccgagga cggcgggacc cgcgtggagt
     5761 tcgacatcga tttccagttc aagtcacggc tgctggaagc cctgctcacc gccaacttcg
     5821 cccacgcggt cgatcgcctg atgatctgtt tcgaggatcg cgcgcaggcg ctgtacggga
     5881 ccgtcgccta ggccgtccgc acacggcaat cgtggtggac gcgatcttca ccctgcttgt
     5941 tagcgggtct gcaactcgcc agggcggaga cttcgcactc gatctcttgg tcgcgaagga
     6001 aagcctaacc gatgttctgg aaggtctacg cggtcttcta tctggttctg atcgtcctgg
     6061 ggctgccccc ggcgctgaac cggctgccgc atatgtcacc gatcgacctg gtcgatatga
     6121 tcgtcttcac cccggtcgcg ctcgcgggcc tctggtcggt ggcctttcgg cacatcagcc
     6181 ttcccacaaa cacgtggaaa gtcctgctgt tcgtctcggt gttctggcgc gccatcgcgg
     6241 tcggcaacgc catactgttc ggcgatatcg tgccgaggct tcagaccggc ctccacgcct
     6301 acgccgccag gatggacccc gtctattccc cggtgatgct ctacggcggt ctggtgatcg
     6361 ccttcctagc cggcgccttc ctgaccttgc cgccgctgat cgggctctac cgcaacgcct
     6421 atggcaacga gagcctgctc aggctcatgt actcgccgat gcggtcacgt cagacggtcg
     6481 cgtagcatct gcagcgccga ttgcacggcc gccagctgga tgccctcgcg atcctcgagc
     6541 tcgaagaact cctggcggtg catcaggccg tgattggtcc gcgcggtggc gatgtggaca
     6601 gtgcctaccg gcttcatggg cgtgccgccg ccggggccgg ccaccccggt gatcgcgacc
     6661 gcgatatggg cgttggagtt ctccagcgcg ccctcggcca tcatccgggc gaccggttcg
     6721 gacaccgccc ccaggtcggc gatcaggtcg ccgggaatgc ccaggagctc ctgtttggcg
     6781 cgattggagt aggtgacgaa gccgcgctcg aagacatccg acgcccccga caccatgcag
     6841 atcgccccgg ccaccagccc accggtgcag ctctcggccg tgacgatccg cagcgaccgc
     6901 tcccgggcct cgtcgacaag caggcgggcc agggtcacga tctcaagcga aaacatctcg
     6961 aggcctctta acggctcata aggtccccgg accagagcat cggacacctt gctcattcaa
     7021 ggcgattcgc gcccccaatc ttcgcgccca ggttccccag ccatgacgac gctcgctccc
     7081 ccagccgctc ggcccgttca gccgcccgcc ggactgttcg ccgtgacggt cttcgccagc
     7141 gcggctctgg tgttcctggt ggagccgatg gtggccaagc tggtgctgcc gaggctcggc
     7201 ggcagtccat cggtgtggaa caccagcctg gctttcttcc aggctgcgct cctggccggc
     7261 tacggctacg cccacctgct gcagaggctg cgttcactgc gcgcccaggc cttcgcgcac
     7321 ggcgcggccc tgctgctggc cgccatcgcc ctgccgctca ggatcaacga actggtcggg
     7381 ccgccgtcgt ccaaccaccc gacgctgtgg ctgctggggg tgctcgcggt atccatcggg
     7441 gcgcccttcg ccgtgctctc tgccaccgcg cccctggtcc aggcctggca tgcgcgcacc
     7501 ttcggcgacg gcgaggggaa ggagccctat gtcctctatg ccgccagcaa cctcggcagc
     7561 ctgctggcgc tgctggccta tccgctgatc gtcgaacccg gactgaccct gcacgcccag
     7621 cgcttcggct ggagcggcgg ctatgtcgcc ttcgccgtcc tgatggcggt cctggccttc
     7681 accgtgatcc gcgcgggagg tgtgggagac gtcgccgcgc cggtgcgtca ggcgccgtcg
     7741 gacgcggcgc cgatcggctg gcgcgaccgg ctgacctggg ttgtgctggc cgccatcccg
     7801 tccagcctga tgctgggggt caccacctac atcaccaccg acatcgcctc ggcgccgttc
     7861 ctctgggtcg tgccgctggc gctctatctc ctgaccttca ttatcgcctt ccaggccagg
     7921 ccggcgatcc cgcgggacgt gacgcttctg ctgcaggccg ccgcggtcgc ggcctgcgcg
     7981 gccgtgctgc ccttcggcgc caacagcttg gcgctgctga tgccgatcca tctggcggcc
     8041 ttcttcctga ccgcgctcat gtgccaccag gcgctggtgg cccgcaggcc ggaccctgcg
     8101 cgtcttaccg agttctactt ctggatgtcc ttgggcgggg tgatcggcgg gtcgttcaac
     8161 gccttcctgg cgccggtgat tttcgacaac gtctgggaat accccttggt tctggtgctc
     8221 tcctgcctgg tcaggccctg gggcaattgg aagatcgagc ccttcgcctg ggccatgctg
     8281 atcgtgggtg tcgccggcgg cgtcgcgact ccgatcctca acagcctcgt cgagccgcac
     8341 gtcctggcta agccgatctt tggcggcttc acccagatgg acgccttctc gctgggcgtg
     8401 cgggtctgcc tgggcgctgg cgtgatctcc gccttcctga tccgcagtcg cgcggtgttg
     8461 ttcttcgtga tcatcgcggt cctctcggtc ggcgcccagg ccgccgccga ccagacggcc
     8521 accaagcaga gctggcgcag cttcttcggg gtgcttcggc agtcggtgac ggatgtgccc
     8581 gccatcggcg gcccggtccg gatgctgtcg cacggcacca ccctgcacgg cgcccaggcc
     8641 gccgacccgc gctggcgctg caacccgctg gtctactatg cgaccaccac ccccatcggg
     8701 caggtgttcc tggcccagca acgcgagaag ccggcgatgc ggatcggcgc ggtgggcctc
     8761 ggcaccggct cggtctcggc ctacgtgcgg gcccacgacc agctgacttt ctt
//
LOCUS       DATAJL010000451         1645 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_20769,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000451 DATAJL010000000
VERSION     DATAJL010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_20769"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1537
                     /locus_tag="VHN39_08680"
     CDS             <1..1537
                     /locus_tag="VHN39_08680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016896 - RNA exonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEX2816456.1"
                     /translation="LITIDPPDARDHDDAVHAQGDDDPKNPGGWIVWVAIADVAAYVR
                     PNSALDETAREKANSVYFPDRVEPMLPEVLSNGLCSLREGENRACMAVRMVFGSDGRK
                     RSHKFVRGLMRSAAKLSYEQAQAAADGTPDDKTGPIARTIIAPLYAAYAVLKKGRLAR
                     SPLAIESAERRIVISAEGEVASITPRAALEAHKLIEEMMIQANVSAAETLEAKRTPLI
                     YRIHDTPSQEKVQALADFLQTLDIAWSKGEAPRTDRFNKLLDETREGPNADIVNEVVL
                     RTQMQAIYSTENIGHFGLNLAKYAHFTSPIRRYADLIVHRGLITALGLGADGLSERDI
                     QKMKDTAESITFAERRAMAAERDATDRYVAAFLSDRVGAEFDGRITGVTRFGLFVRLD
                     ETGADGLVPVSKLGGEYFVHDDKSHALVGDRTGARWPLGMRVTVKLVEATPITGGLLF
                     EMISEPAAADPNAPKPRLGMRDRNDRARGGFKGGGYKGPPRAGQSGRPKNIRAGKKVG
                     PRR"
BASE COUNT          296 a          582 c          550 g          217 t
ORIGIN      
        1 gctgatcacc atcgatccgc ccgatgcgcg cgaccacgac gacgcggtcc acgcccaggg
       61 cgacgacgat cccaagaacc ccggcggctg gatcgtctgg gtggccatcg ccgacgtcgc
      121 cgcctacgtc cgccccaact ccgccctcga cgagacggcg cgcgagaagg ccaacagcgt
      181 ctatttcccc gatcgggtgg agcccatgct gccggaggtg ctctccaacg gcctctgcag
      241 cctccgagaa ggcgagaacc gcgcctgcat ggcggtgcgc atggtcttcg gctcggacgg
      301 ccgcaagcgg tcccacaagt tcgtgcgcgg cctgatgcgc tcggccgcca agctgtcgta
      361 cgagcaggcc caggccgccg ccgacgggac gcctgacgac aagaccggtc cgatcgcgag
      421 gaccatcatc gccccgctct acgccgccta cgcggtgctg aagaagggcc ggctggcccg
      481 ctcgccgctg gccatcgaaa gcgccgagcg ccggatcgtg atcagcgccg agggcgaggt
      541 cgcctcgatc acgccgcgcg ccgccctcga ggctcacaag ctgatcgagg agatgatgat
      601 ccaggccaat gtctcggccg ccgagaccct ggaagcgaag cgcaccccgc tgatctaccg
      661 gatccacgac acgcccagcc aggagaaggt ccaggcgctg gcggacttcc tgcagacgct
      721 ggacatcgcc tggtcgaagg gcgaggcgcc gcgcaccgac cgattcaaca agctgctcga
      781 cgaaacccgc gaggggccca acgccgacat cgtcaacgag gtggtgctgc gcacccagat
      841 gcaggcgatc tattccacgg agaacatcgg ccacttcggg ctgaacctgg cgaaatacgc
      901 ccacttcacc tcgccgatcc gaaggtacgc cgacctgatc gtccatcgcg gcctgatcac
      961 ggcgctaggc ctcggcgccg acggcctgtc ggagcgcgac atccagaaga tgaaggacac
     1021 cgccgagagc atcaccttcg ccgagcgccg ggccatggcc gccgagcgcg acgccaccga
     1081 ccgctatgtg gcggcattcc tgtccgaccg ggttggcgcg gaattcgacg gccggatcac
     1141 aggtgtgacc cgctttgggc tgtttgtccg actggacgag accggcgccg acggtctggt
     1201 tcccgtttcc aagctgggcg gcgagtactt cgtccatgac gacaagagcc atgccctggt
     1261 gggcgaccga accggcgcgc gctggccgct cggcatgcgg gtgaccgtga agctggtgga
     1321 agccacgccg atcaccggcg gcttgctgtt cgagatgatc agcgagccgg cggcggccga
     1381 tcccaatgcg ccgaagccca ggctcggcat gcgcgaccgc aacgaccgcg cccggggcgg
     1441 tttcaagggc ggcggctaca agggcccgcc ccgcgccggc cagtccggac ggccgaagaa
     1501 catccgcgcc ggcaagaagg tcggacctcg ccgctagaga ggggccgcta agcggccgcc
     1561 gcctcgggtt tcggcttgag ggtgcgccgg atggtcaaga gcagaaccgg gatcagcagc
     1621 cagcaccact gcgcgacgtg cagat
//
LOCUS       DATAJL010000452         3669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_57932,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000452 DATAJL010000000
VERSION     DATAJL010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_57932"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..404)
                     /locus_tag="VHN39_08685"
     CDS             complement(<1..404)
                     /locus_tag="VHN39_08685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEX2816457.1"
                     /translation="MLDDLKANNRAWAERKVAADPGFFKRLEGQQAPQYLWIGCSDSR
                     VPANEIVDLDPGELFVHRNVANLAPPQDANYLSVLQFAVDVIKVKHVLVVGHYGCGGV
                     AAAVDGRRRGLVDHWLHPIREVSHEHRHELEA"
     gene            complement(419..1063)
                     /gene="maiA"
                     /locus_tag="VHN39_08690"
     CDS             complement(419..1063)
                     /gene="maiA"
                     /locus_tag="VHN39_08690"
                     /EC_number="5.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016034 - maleylacetoacetate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="maleylacetoacetate isomerase"
                     /protein_id="HEX2816458.1"
                     /translation="MRFTLHSAWRATAPYRVRIGLALKGVPYDYAAVDLIRGDQRTPE
                     YRAVNPQGLTPALDLGGGRVLTQSLAILEWLEEEYPDPPLLPKTSLDRQAVRAMALII
                     ACDIHPLNNTRVGRKLNKMGIDQAGILEWTQGWIRDGFDALEPMIVRHGRGYAFGDTP
                     TLADCCLIPQVYSANRYEVDLAPWPAIRAVNERALEHPAFQAAHPTKQPDAVPA"
     gene            complement(1063..1743)
                     /locus_tag="VHN39_08695"
     CDS             complement(1063..1743)
                     /locus_tag="VHN39_08695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX2816459.1"
                     /translation="MSQYLFDPPAVVTVPVEGQSALFPVRRILCVGRNYAAHRREMGG
                     DDRDPPFFFAKPADAIVAPGGDVAYPPKTSNLHHEIELVVALKAGGKDIPVDKALDLV
                     FGYAVGVDMTRRDLQNAAKDKGQPWDASKGFDASAPISAIKPWTGAPPQGRINLSVNG
                     QARQDATVADMIWATAEIISEASKLWTLAPGDLIYTGTPEGVGPLVRGDKVEGAVEGV
                     GSLAFTVV"
     gene            1957..3159
                     /locus_tag="VHN39_08700"
     CDS             1957..3159
                     /locus_tag="VHN39_08700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEX2816460.1"
                     /translation="MSEPQGPLTDLVVIEMGSLIAGPFAGQILGDFGAEVIKIEDPKV
                     GDPMRQWGRSLPKGHSPWWPVIGRNKKSVGLDLRTPEGQAIAKALIAKADVVIENFRP
                     GAMEKWGLSYEALSADNPRLVMARVSGFGQTGPYATRAGYGLIGEAMGGLRYVTGEPD
                     RPPARAGISIGDSLAAMHAVMGITMALHERERTGRGQVIDAALYESVLAVMENLVTEY
                     DITGYVRERSGSVLPGIAPSNAYPCAGGELILIGGNGDTVYARLTEAMGRGDLKTDPR
                     FVDHASRGVNQHELDAIIAEWTCGFALSDLLALLESKGVPASRVFRAPDMLDDPQFVA
                     REAIVTTEHPVFGPIRMQNVFPKLSRTPGRVRWPGPPLGAHTDEVLEARAGLTPERLA
                     ELRGKGIV"
     gene            complement(3355..>3669)
                     /locus_tag="VHN39_08705"
     CDS             complement(3355..>3669)
                     /locus_tag="VHN39_08705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816461.1"
                     /translation="ELETGLSDAGAKIIGPAYELEEAMALLGQPIDAAVLDANVNGHA
                     VTPVAEALLARGVPFVFATGYGEAAGAPGGFDAPVIRKPYDVTQVAAAVAELLKVNTP
                     HP"
BASE COUNT          557 a         1231 c         1318 g          563 t
ORIGIN      
        1 atcgcctcca gttcgtggcg gtgttcgtgg ctcacctcgc ggatcgggtg cagccagtgg
       61 tcgaccaggc cgcgccggcg cccgtcgacc gccgcggcga cgccgccgca gccgtagtgg
      121 ccgaccacca gcacgtgctt caccttgatc acgtcgaccg cgaactgcag cactgacaga
      181 tagttggcgt cctgcggcgg ggcgaggttg gcgacgttgc ggtggacgaa gagttcgccg
      241 gggtccaagt ccacgatctc gttggccgga actcggctat cggagcagcc gatccacaga
      301 tattgcgggg cctgctggcc ctccaggcgc ttgaagaagc cggggtcggc ggcgaccttg
      361 cgctcggccc aggcgcggtt gttggctttc agatcgtcga gcatcagccc ctcttatcct
      421 aagccggaac cgcgtcgggc tgtttcgtgg ggtgggcggc ctggaaggcc gggtgctcga
      481 gggcgcgttc gttcaccgcg cggatcgcgg gccagggggc cagatccacc tcgtagcggt
      541 tggcggaata gacctgcggg atcaggcagc agtcggcaag ggtcggcgtg tctccgaagg
      601 cgtaacccct gccgtggcgg acgatcatcg gctccagcgc atcgaagccg tcgcggatcc
      661 acccttgagt ccactccagg atgccggcct ggtcgatgcc catcttgttg agctttcggc
      721 cgacccgggt gttgttcagc ggatggatat cgcaggcgat gatcagggcc atggcgcgga
      781 ccgcctggcg atccagggac gtcttcggca gcagcggggg gtcgggatac tcctcctcca
      841 gccactcaag gatcgccagg ctctgggtca gcacgcggcc gccgccgaga tcgagcgccg
      901 gggtgagccc ctgcgggttc accgcgcggt attccggcgt ccgctgatcg ccgcggatca
      961 ggtccaccgc ggcatagtcg taaggcacgc ccttcagcgc caggccgatg cggacccggt
     1021 agggcgcggt ggcccgccag gcggagtgca gggtgaagcg catcagacca ccgtgaaggc
     1081 gagcgaaccc acgccctcga ccgccccctc gaccttgtcg ccgcggacca aggggccgac
     1141 gccctcgggg gtgccggtgt agatcaggtc gccgggagcc agcgtccaga gcttcgaggc
     1201 ctcggaaatg atctcggccg tggcccagat catgtcggcg acggtggcgt cctggcgggc
     1261 ctggccgtta acggagagat taatgcggcc ctgcggcggg gcgcccgtcc agggcttgat
     1321 ggcggagatg ggggcagatg cgtcgaagcc cttcgacgca tcccagggct ggcccttgtc
     1381 cttggccgcg ttctgcaggt cgcggcgggt catgtcgacg ccgaccgcgt agccgaagac
     1441 caggtcgagc gccttgtcga cgggaatatc cttgccgccg gccttcagcg ccaccaccag
     1501 ctcgatctca tgatgcaggt tcgaggtctt cggcggatac gcaacatccc cgccgggggc
     1561 cacgatggcg tcggcgggct tggcgaagaa gaacggcgga tcgcggtcgt cgccgcccat
     1621 ctcgcgccgg tgggcggcgt agttgcggcc gacgcacagg atgcggcgca cggggaacag
     1681 cgcgctctgg ccctcgacgg gcacggtcac gacagcgggc ggatcgaaga ggtattggct
     1741 catggcctgc gccttacgcc gggtcccctc gcccgtccac cccatcaaaa tggccgtcat
     1801 ccccgggctt gtcccggaga gccagacacg ccatcgctgc aggcaaatcg gcgacgccgg
     1861 tgtttatggg tggccggcca atcgttgaag gccaaggaat cgcgcgcgcc ccgcgcgtgc
     1921 ggggcccggc catgacgatc cagaggaaga ggattgatga gcgaacccca aggccccctt
     1981 accgacctgg tggtgatcga gatgggttcg ctgatcgctg ggcccttcgc cggccagatc
     2041 ctgggcgact tcggcgccga ggtgatcaag atcgaggatc ccaaggtggg cgatcccatg
     2101 cgccagtggg gccgcagcct gcccaagggc cattcgccct ggtggccggt gatcgggcgc
     2161 aacaagaaat cggtgggcct ggacctgcgc acgcccgagg gccaggccat cgccaaggcg
     2221 ctgatcgcca aggccgatgt ggtcatcgaa aacttccggc cgggcgccat ggagaaatgg
     2281 ggcctctcct atgaggcgtt gagcgccgac aaccccaggc tggtgatggc ccgggtctcg
     2341 ggcttcggcc agacaggtcc ctacgcgaca cgcgccggct acggcctgat cggtgaggcc
     2401 atgggcggcc ttcgctatgt gaccggcgag cccgaccggc cgccggcccg ggccggcatc
     2461 tccatcggcg acagcctggc agccatgcat gcggtgatgg gcatcaccat ggcgctgcac
     2521 gagcgggagc gcaccgggcg cggccaggtg atcgacgcgg cgctctacga gagcgtgctg
     2581 gcggtgatgg agaacctggt caccgaatac gacatcaccg gctacgtccg cgagcgctcg
     2641 ggctcggtcc tgccgggcat agcgccctcc aacgcctacc cctgcgccgg cggcgagctg
     2701 atcctgatcg gcggcaacgg cgacacggtc tacgcccgac tgaccgaggc catgggccgg
     2761 ggcgacctga agaccgaccc caggttcgtc gaccacgcct cgcgcggcgt gaaccagcat
     2821 gagctcgacg cgatcatcgc cgaatggacc tgcggcttcg cgctttccga cctgctggcc
     2881 ctgctggagt ccaagggggt gccggcttcc cgcgtcttcc gcgcgccgga catgctggac
     2941 gacccgcagt tcgtggcccg cgaggcgatc gtcacgaccg agcatccggt gttcgggccg
     3001 atccgcatgc agaacgtgtt ccccaagctc tcgcgcacgc cgggccgggt ccgctggccg
     3061 gggccgccgc tgggggcgca tactgatgag gtgcttgagg cccgcgccgg cctgacgccc
     3121 gaacgcctgg cggagctgcg cggcaagggg atcgtctgaa ggacgagacg gaaagggtgg
     3181 cggccggtcc gcgacccatg ccgcggaccg aacgaggagg ttgggctcgc ttgactcggg
     3241 cgaagtccct gggccgccgg tccggcccct gcgaaggtcc gcaggtcccc ctgccggctt
     3301 gtttacagcg gcggtccgcg cgaggagagg cggcgccttg tctcaggtgg ccctttaggg
     3361 gtgcggcgtg ttgaccttca ggagttcggc caccgcggcg gccacctgcg tcacgtcata
     3421 gggcttgcgg atcaccggcg cgtcgaagcc gccgggcgcg ccagccgcct cgccatagcc
     3481 ggtggcgaag acgaacggca caccgcgcgc cagcagcgcc tcggccaccg gggtcaccgc
     3541 gtggccgttg acgttggcgt cgagcacggc ggcgtcgatc ggctggccca gcaaggccat
     3601 ggcctcctcc agttcgtagg ccgggccgat gatcttcgcg cccgcgtcgg agaggccggt
     3661 ctccagctc
//
LOCUS       DATAJL010000453         1934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_67630,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000453 DATAJL010000000
VERSION     DATAJL010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67630"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VHN39_08710"
     CDS             <1..414
                     /locus_tag="VHN39_08710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816462.1"
                     /translation="VETQPRSAAYHARRILELRERYAAPDVVAAMAHALAFRAFSANA
                     VARIVEVRARPRTLDEYVAAETEGKLRGLLSGERLVPRDLRSYDVSLPPLPPPPADTE
                     SAPAACETTDEIPATEEPPPCPTEMPPSQDPTKPK"
     gene            366..1271
                     /gene="istB"
                     /locus_tag="VHN39_08715"
     CDS             366..1271
                     /gene="istB"
                     /locus_tag="VHN39_08715"
                     /inference="COORDINATES: protein motif:HMM:NF013828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
                     /protein_id="HEX2816463.1"
                     /translation="MSDRDATEPGSDQAKVSKAADAHAALLDARVRRYLEILALPCIG
                     KTLDEVLAWARKERPAALALIERVLAGDAEDRLTRAIDRRLVDSGLPDRPTLETFDFE
                     FQPSIDKALVLQLAELDFIGAHEDVVLTGTSGTGKSHVVKSIGVRACGAGIKVLYRRF
                     HGLMDDLYAGLADNTYDKRLRRYARVPLLIIDDVGLGRIRRSEHEPTAAQMLFTLIDQ
                     RVGHGSTLMTSNIKLSAWGGYLGDASLTMAILDRMIQRAIRMEIEGPSWRDKESKELN
                     ERRRSDAQKPKSPPSTRAKADKPSR"
     gene            1289..1552
                     /locus_tag="VHN39_08720"
     CDS             1289..1552
                     /locus_tag="VHN39_08720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816464.1"
                     /translation="MPPRRPRPLPSVTDVCPGARRPIRRTIVEIRRLVDALVATFPDA
                     ALLVRDPGLAERIETTPHDHVVAQVIVSARAFLRALNDLADPP"
BASE COUNT          317 a          765 c          562 g          290 t
ORIGIN      
        1 gtcgagacgc agcctcgctc ggccgcctac cacgcccggc gcatcctcga gctgcgcgag
       61 cgctacgccg cgcccgacgt cgtcgccgca atggcccacg cgctggcgtt ccgggcgttc
      121 tcggccaacg ccgtcgcgcg catcgtcgag gtgcgtgcca ggccgcgcac cctcgacgag
      181 tacgtcgccg ccgagactga gggcaagctg cggggcctgc tctccggcga gcgcctcgtc
      241 ccccgagatc tgcgcagcta cgacgtctcg ctacccccgc tgcctccgcc gcccgccgat
      301 acagagtccg cgccagccgc gtgtgaaacc accgatgaga tccccgcgac cgaggagccg
      361 ccgccatgtc cgaccgagat gccaccgagc caggatccga ccaagccaaa gtgagcaagg
      421 cggccgacgc tcacgccgcc ctcctcgacg cccgcgtgcg aaggtatctc gagatcctcg
      481 cacttccatg catcggcaag acgctcgatg aagtcctcgc atgggcccgc aaggagaggc
      541 ctgccgccct cgccctcatc gagcgcgtgc ttgcaggcga cgcagaggac cggctcacca
      601 gggccatcga tcgccgtctc gtcgattcgg gcttgcccga caggcccacg ctcgagacct
      661 tcgacttcga gttccagccc agtatcgaca aggccctcgt cctgcagctc gccgagctcg
      721 atttcatcgg cgcccacgag gacgtcgtac tcacggggac cagcggcact ggaaaaagcc
      781 acgtggtcaa atccataggc gtgcgcgctt gcggagccgg catcaaggtt ctttaccgcc
      841 gctttcacgg actgatggac gatctgtacg caggtctggc tgacaatacc tacgacaagc
      901 gactgcgtcg ctacgctcgc gtccctctcc tcatcatcga cgacgtcggc ctcggccgca
      961 ttcgccgctc agagcacgag cccaccgccg ctcagatgct cttcaccctc atcgaccagc
     1021 gcgtcggtca cggctcgacc ctgatgacca gcaatatcaa actctccgcc tggggtgggt
     1081 acctcggcga tgcctccctc accatggcca tcctcgatcg catgatccag cgcgccatcc
     1141 gcatggagat cgaaggcccg agctggcgtg acaaggaatc caaggagctc aacgagcgtc
     1201 gccgctctga cgctcagaag cccaaatcgc caccgagcac ccgcgccaag gccgacaagc
     1261 cgtctcgctg aacgggagca tggtgcccat gcctccccgc cggccccggc cgctcccctc
     1321 cgtcaccgac gtctgcccgg gcgcacgtcg ccccattcgt cgcaccatcg tcgagatccg
     1381 ccgcctcgtc gacgcgctcg tggcgacctt tcccgacgcc gccctcctgg tgcgcgaccc
     1441 cggcttggcc gaacggatcg agaccacccc ccacgaccac gtcgtcgccc aggtgatcgt
     1501 ctcggcccgc gcattcctgc gcgccctcaa cgatctcgcc gatcccccgt aggcctgtcc
     1561 gccgctcccg gcccccggcg aagcacccgg cgcctcgggc cggcgaggcc tctctcagtg
     1621 ggggccccgg ccgaccgccg cgcagagaga cgaccgacgc gtgcaccttg cgcacctggt
     1681 gcccatcggt cgatcacccg gccggccgtg gctcgccgct ggcttgcctg atcgccactc
     1741 cgccgatctg agcccctcca acccgatcca ccactggcca cttcacgccg cccgatctgg
     1801 tatcaccgcc ggtcggcgtt gaagcgtcgg gcaaccgcgg gccgggtcag ccttacaggg
     1861 gatcatcggc gtttgatgca acaagatggc aggcattgga cttgctgcac gaccacgacc
     1921 acgaccgccc ggga
//
LOCUS       DATAJL010000454         2578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58023,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000454 DATAJL010000000
VERSION     DATAJL010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58023"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VHN39_08725"
     CDS             complement(<1..205)
                     /locus_tag="VHN39_08725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816465.1"
                     /translation="MDKPISRFDADAPLIETWAAQIREQGFTVIPDFLDPAALAAFRE
                     ALAPFLGAHRGRNDFEGFETERVY"
     gene            complement(225..1469)
                     /locus_tag="VHN39_08730"
     CDS             complement(225..1469)
                     /locus_tag="VHN39_08730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03862 family flavoprotein"
                     /protein_id="HEX2816466.1"
                     /translation="MTAPARTLLAARVAVIGAGPAGLMAAQVLAEGGGHVTVYDRMPS
                     VGRKLLMAGRGGLNLTHSEPLERFLPRYGPAAERLAPLIEAWPPPALIAWAEGLGQET
                     FVGSSGRVFPKALKASPLLRAWLARLQALGVEIRTRHDWTGWNAKGALTFATPEGKAT
                     STPDATVLALGGASWPKLGSTGAWAAVLAKAGVAVSPLKPANAGFDVAWSEVFRDRFP
                     GEPLKGVALTFGRVRVRGEAMVTRHGLEGGAIYALSADIRDAIAKEGTARLWIDLRPD
                     ARVEELAAKLAQQPANQSAANRLRKALHMTPLETNLLREAHGKDLPADPAAMATAIKG
                     APLTLTAIRPIARAISTAGGVALGAVDEDLMLTARPGVFVAGEMLDWEAPTGGYLLQA
                     SFATGAAAAHGVLGRLEKGVVQ"
     gene            complement(1536..>2578)
                     /locus_tag="VHN39_08735"
     CDS             complement(1536..>2578)
                     /locus_tag="VHN39_08735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816467.1"
                     /translation="MTPDDDDVLAGGADVAAPDGPAGEEGQGYLWDAAIRKGLTVRNY
                     GFYGDLVRYDEKAPNRLPLERDPFAKGLRVFFPTKAALAKVSDPYFRAFDQAFPDYWR
                     LQEWKREFRGYVAKGTLPSLTLLRLPHDHTGAFGKALDKVDTVEAQLADNDYAVGLAV
                     QTVAQSPFAKDTLVFIVEDDAQDGPDHVSARRTLALVAGPYVRQHAVLSRPYTTVNFL
                     RTMEDVLGLQPMSMNDSLARPMTELFDLKQAAWSYTAQVPVVLRATALPLPGRTAAAI
                     GAGVCHAPRSADYWAKAMAGLDFAVEDHLDTARYNQALWTGMTGQSSVPEPSGEDLRH
                     DRAARLAALACR"
BASE COUNT          378 a          880 c          947 g          373 t
ORIGIN      
        1 tgtagacccg ctcggtctcg aagccctcga agtcgttgcg gccccggtgc gcgccgagga
       61 agggcgccag cgcctcacga aaggcggcga gcgcggctgg gtcaaggaag tccggaatga
      121 ccgtgaagcc ctgctcgcgg atctgggcgg cccaagtctc gataaggggg gcgtcggcgt
      181 cgaagcggct gatcggtttg tccatgagcg agggcctccc gaacctattg taccacgccc
      241 ttttccagcc ggccgagcac gccgtgggcc gcggcggctc cggtggcgaa gcttgcctgc
      301 aagaggtagc cgccggtcgg cgcctcccaa tccagcatct cgccggcgac gaagacgccg
      361 ggcctggcgg tgagcatcag gtcctcatcc acggcgccga gcgccacccc gccggcggtg
      421 gagatggcgc gcgcgatcgg gcggatggcg gtgagcgtca gcggcgcgcc tttgatcgcg
      481 gtggccatgg cggcggggtc ggcgggcagg tccttaccat gcgcttcgcg caacaggttg
      541 gtctccagcg gggtcatatg cagcgccttg cgcaggcggt tggcggcgga ctggttggcc
      601 ggctgctggg cgagtttcgc cgccagctcc tcgacgcggg cgtcgggtct gaggtcgatc
      661 cacaggcgag ccgtgccctc cttggcgatc gcgtcgcgga tgtcggcgga cagcgcatag
      721 atcgcgccac cctccaggcc atggcgggtg accatcgcct cgccgcgcac cctgacgcgg
      781 ccgaaggtca gcgccacgcc cttcagcggt tcgccgggga agcggtcccg gaagacctcg
      841 ctccaggcca cgtcgaaacc ggcgttggcg ggcttgagcg ggctgaccgc gacgccggcc
      901 ttcgccagca cagcggccca ggcgccggtt gagcccagct tcggccaact cgcgccgccg
      961 agcgccagga cggtggcgtc gggggtcgag gtcgccttgc cctcaggcgt cgcgaaggtg
     1021 agggcgccct tggcgttcca accggtccag tcgtggcggg tgcggatctc gacaccgagc
     1081 gcctgcagcc tagcgagcca agcccggagc aggggcgagg ccttcagcgc cttggggaac
     1141 acgcggcctg aggagccgac gaaggtctcc tgaccgaggc cctcggccca ggcgatcagg
     1201 gccggcggcg gccaggcctc gatcagcggc gcgagccgtt cggccgccgg cccgtaacgc
     1261 ggcaggaagc gctccaatgg ctccgaatgg gtgaggttca gtccgccccg cccggccatc
     1321 aagagcttgc ggcccaccga cggcatacgg tcgtagacgg tgacatggcc gccaccttcg
     1381 gccagcacct gggccgccat caggccggcg ggtccggccc cgatgacggc gacccgggcg
     1441 gcgaggaggg tgcgcgcggg cgcggtcatc aagcgaatcc gaggcgagcg ggaccgaggt
     1501 cataacagcc gccgggcctc tgcagcgagt ccgctctagc gacaggccaa cgccgccagc
     1561 cgcgctgcgc ggtcatggcg caggtcctct ccactgggtt cgggcacgct ggattgcccg
     1621 gtcatgccgg tccagagcgc ctggttgtag cgagcggtgt ccaggtggtc ctcgaccgcg
     1681 aagtcgaggc cggccatggc cttcgcccaa tagtccgcgc tgcgcggcgc atggcagacg
     1741 ccggctccga tggcggcggc ggtcctgccg ggcaggggca gggcggtcgc gcgcagcact
     1801 accggaacct gcgccgtgta gctccaggcc gcctgcttca ggtcgaacaa ctcggtcatc
     1861 ggccgcgcca gggagtcgtt catcgacatg ggctggaggc ccaggacgtc ctccatcgtg
     1921 cgcaggaagt tgaccgtggt gtagggccga gacagcacgg cgtgctggcg gacatagggg
     1981 ccggccacca gcgccagcgt ccggcgtgcg ctgacatgat ccgggccgtc ctgggcgtcg
     2041 tcctcgacga tgaagaccag ggtgtccttg gcgaacgggc tctgcgccac cgtctgcacg
     2101 gcgaggccca cggcgtagtc attgtcggcc aactgggcct cgacggtatc gaccttgtcg
     2161 agcgccttgc cgaaggcgcc ggtgtggtcg tgcggcagcc gaagcagggt caggctgggg
     2221 agcgtcccct tcgccacata gccgcggaat tcccgcttcc actcctggag gcgccagtag
     2281 tccgggaagg cctgatcgaa ggcgcggaaa tacggatccg acaccttggc cagcgccgcc
     2341 ttggtgggga agaaaacccg caggcccttt gcgaagggat cgcgctcaag gggaaggcgg
     2401 ttcggcgcct tctcgtcgta gcgcaccaga tcgccgtaga agccgtagtt gcggacggta
     2461 aggccctttc ggatcgccgc gtcccagagg tagccctggc cctcttcgcc cgccgggcca
     2521 tcgggcgccg ccacgtcggc cccgcccgcc aggacatcgt cgtcgtccgg cgtcatgc
//
LOCUS       DATAJL010000455         4762 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106596,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000455 DATAJL010000000
VERSION     DATAJL010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4762
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106596"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VHN39_08740"
     CDS             complement(<1..520)
                     /locus_tag="VHN39_08740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816468.1"
                     /translation="MDLRKLALPATALALLVSPALAQTKAAQGASGATYHAPKNGWGQ
                     PDLQGTYTTATITPVTRDPKYGTRNVLTKQEAFALEQATRDQVKRADEPTPPEATVKD
                     LKNADCGADGISGFNCGYNQGWKDPGTALIDINGEKRASIITSPANGQFPARVAGAGH
                     PGRELAVGRRGDD"
     gene            complement(588..1139)
                     /locus_tag="VHN39_08745"
     CDS             complement(588..1139)
                     /locus_tag="VHN39_08745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004622975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816469.1"
                     /translation="MRIVVMGTSGSGKTTLARRLAAALSLPRIELDAINWQPGWVALD
                     QTDRPEFVRRVQAAIDGEAWVSDGNYSTVRPMLLARATHLVWLDFSRPVTMARVIRRS
                     FIRAVTGDELWPGTGNREEFARWLDKDHPIRWAWDTFHARRARYEAAFADPALAHLSL
                     CRIRSNRDADALLARLTREALSI"
     gene            complement(1149..2438)
                     /locus_tag="VHN39_08750"
     CDS             complement(1149..2438)
                     /locus_tag="VHN39_08750"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX2816470.1"
                     /translation="MLVLCRVIIATGSGEGSATLGKARKLAEKATGPLAGIRVLDLTS
                     VVNGAYGTQILADQGADVIKLEDPGSGRGDGGDIMRWAGHAPEGAPRGMGPIFLTINR
                     NKRSVLLDLTDPKARKTLERLIKSCDVFAASVRYAGLQRLGLAYEDVTAMKPDIVYVH
                     AAGYGSDGPYAGEPAYDDLIQSASGLADVLPRTDGNPTPRILPTLVADKVSGLFMAQA
                     VTAALLHKARTGEGQFVEVPMLECVTSFLLVEHLYDQTYQPPTGQWGYVRVVNPNRRP
                     FKTKDGYIGLLPYTDKQWDQFFEVAGFGETIAKDPRFSDYFTRMKHINELYGLVGEAA
                     LTKTTQEWLDVLKPLSIPVVKTNRLEDLPDDPHLKAVDFFQTYEHPTMGGYRQMKPPV
                     KFSKTPSNIRRHPPGLGEHSEEILAELGAEIGEGEEA"
     gene            2456..3622
                     /locus_tag="VHN39_08755"
     CDS             2456..3622
                     /locus_tag="VHN39_08755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2816471.1"
                     /translation="MDFELAEEHRMLKDLVARFVRDELMPLEAGVLARDAEGQGLGIG
                     PAEHARLDKVAHELGLFGLDAPEDVGGSDLPMTAMVGVEEEIGRCVTPYTLPPDSPNL
                     RMLMQTVDERQRAAYLAPYVAGKTISAIGISEPGAGSDPAGMTTKAVRDGEDWVINGR
                     KIWISRAADADFTILMALTDTEKRARGGISAFLVDKGTPGFNVLRRIPMIGGAYTYEI
                     ALEDCRVEGWKLLGQEGAGFAPMQTRLGTRRIQMAAWSVGMAQRALDMIVEYAPQRKT
                     FGMPLSERQAIQFWVAEAATKIHATRLMTYDCAWKLDQGRDVRNEISMIKWYATEMAY
                     ETVDRAMQAFGAMGMTKELPLAQMQAKLRTMRIYDGPTEVHKWVVARNLLGTRK"
     gene            3619..4395
                     /locus_tag="VHN39_08760"
     CDS             3619..4395
                     /locus_tag="VHN39_08760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX2816472.1"
                     /translation="MKTAFGDHVTVAADGHVAVVTIDKPPHNHVSVDLMRDLADAFDA
                     VDAEVTLRCSVLQTEGKNFCAGADLVRREDAGGLGAVNPLYDQAVRLFSAKKPIVAAV
                     QGAAVGAGLGLAVMADFRIASPDARFAANFVKLGFHPGFGLTHTLPRLIGPTKAELMC
                     LTGRRVKAEDGLPWGLVDEVAPLEDLRSTALALAREIAENAPLAIVSTRKTMRGDLAA
                     AVRAQTDVEAAEQGWLRDTADYKEGVLSVSERRVGNFTGR"
     gene            complement(4382..>4762)
                     /locus_tag="VHN39_08765"
     CDS             complement(4382..>4762)
                     /locus_tag="VHN39_08765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816473.1"
                     /translation="AQDQARDAQQQAAIAQQQAADANARAESAQQSAAASAADAAAAR
                     SAAALAAETPPPAPQVETTVTTSHPATTHHTTHTKVTRRTTTTSTGAVATPSDQVTTT
                     TKVTPQYPGRRVGYRGRPPRLSAP"
BASE COUNT          704 a         1556 c         1730 g          772 t
ORIGIN      
        1 gatcatcacc tcgccggcca acggccagtt cccggcccgg gtggccggcg ccggccaccc
       61 gggccgggaa ctggccgttg gccggcgagg tgatgatcga ggcgcgcttc tcgccgttga
      121 tgtcgatgag cgcggtgccc ggatccttcc agccctggtt gtagccgcag ttgaagccgg
      181 agatgccgtc ggcgccgcag tcggcgttct tcaggtcctt caccgtggct tccggcgggg
      241 tgggctcatc ggcgcgcttc acctgatccc gggtggcctg ttcgagcgcg aaggcttcct
      301 gcttggtgag cacattgcgc gtgccgtatt tcggatcgcg ggtgaccggc gtgatcgtgg
      361 cggtggtgta ggtgccctgc aggtccggct gaccccagcc gttcttcggc gcgtggtagg
      421 tggctccact ggcgccttgg gccgccttgg tctgggccag ggccggcgac acgagcaacg
      481 caagcgccgt ggccggcagg gcgagtttcc gtaagtccat agctttgctc cgacccagtg
      541 ggccgactct tggcggtcgg cgctgcctac aggatagacc ggcgcggtca gatggaaaga
      601 gcttcgcgcg tcagacgcgc cagcagggcg tcagcgtcgc ggttgctgcg gatgcggcaa
      661 aggctcaggt gggccagggc ggggtcggcg aaggcggcct cgtaccgggc gcggcgggca
      721 tggaaggtgt cccatgccca gcggatcggg tggtccttgt cgagccagcg ggcgaattcc
      781 tcgcggttgc cggtcccggg ccagagttcg tcaccggtca ccgcccggat gaacgagcgc
      841 cggatcacgc gcgccatggt cactggccgg ctgaagtcga gccagaccag gtgggtcgcg
      901 cgggcgagca gcattggccg caccgtggaa tagttgccgt cgctgaccca ggcctcgccg
      961 tcgatggcgg cctgcacccg gcggacgaac tccggccggt cggtctggtc gagcgcgacc
     1021 cagcccggct gccagttgat cgcatcaagc tcgatgcgcg gcaggctgag cgcggcggcc
     1081 aggcgcctgg ccagcgtggt cttgcccgag cccgaggttc ccatgaccac gatccgcatg
     1141 ggcgcgtctc aggcctcttc accctcgccg atctcagcgc cgagttcggc caggatctcc
     1201 tcggaatgtt cgcccaggcc cggcgggtgg cggcggatgt tcgacggggt cttggagaac
     1261 ttcaccggcg gcttcatctg ccggtagccg cccatggtcg ggtgttcgta ggtctggaag
     1321 aagtcgaccg ccttgaggtg aggatcgtca ggcagatcct ccagccggtt ggtcttcacc
     1381 accgggatcg agagcggctt cagcacatcc agccactcct gggtggtctt ggtcagcgcc
     1441 gcctcgccca ccagcccgta gagctcgttg atgtgcttca tgcgggtgaa atagtcggag
     1501 aaacgcgggt ccttggcgat ggtctcgccg aagccggcca cctcgaagaa ctggtcccac
     1561 tgcttgtcgg tgtaaggcag caggccgatg tagccgtcct tggtcttgaa cgggcggcgg
     1621 ttcggattga ccacccggac atagccccac tggccggtgg gcggctggta ggtctggtcg
     1681 tagaggtgct cgaccagcag gaagctggtc acgcactcca gcatcggcac ctcgacgaac
     1741 tgaccctcgc cggtgcgcgc cttgtgcagc agcgccgcgg tcaccgcctg ggccatgaag
     1801 agacccgaga ccttgtcggc caccagggtc ggcaggatgc gcggggtggg gttgccgtcg
     1861 gtgcgcggca ggacgtcggc caggcccgag gccgactgga tcaggtcgtc ataggcgggc
     1921 tcgccggcgt aggggccgtc ggagccgtag cccgcggcgt ggacatagac gatgtccggc
     1981 ttcatagccg tcacgtcctc ataggccagg cccaggcgct gcaggcccgc gtagcgcact
     2041 gaggcggcga acacgtcaca ggacttgatc agcctctcca gggtcttgcg ggccttcggg
     2101 tcggtcagat cgagcagcac cgagcgcttg ttccggttga tggtcaggaa gatcggcccc
     2161 atgccgcgcg gcgcgccctc cggcgcgtgg cccgcccagc gcatgatgtc gccgccgtcg
     2221 ccgcggcccg agcccgggtc ctccagcttg atcacgtcgg cgccctggtc ggcgaggatc
     2281 tgggtcccat aggcgccgtt gaccacgctg gtcaggtcca gcacgcggat tcccgctagc
     2341 ggtcccgtcg ccttctccgc cagtttcctt gctttcccca acgtcgcact cccctcgccg
     2401 cttccggtcg ctatgatcac cctacaaaga acgagcaccc gacgggaggg gccgcatgga
     2461 tttcgaactc gccgaagaac accggatgct caaggacctg gtcgcgaggt tcgtccgcga
     2521 cgagctgatg ccgctggagg ccggcgtgct ggcccgcgac gccgagggcc aggggctggg
     2581 gatcggcccg gccgagcacg cccggctgga caaagtggcc cacgagctcg gcctcttcgg
     2641 cttggacgcc ccggaggacg tgggcggctc ggacctgcca atgaccgcga tggttggcgt
     2701 cgaggaggag atcggccgct gcgtcacacc ctacacgctg ccgcccgaca gcccgaacct
     2761 gagaatgctg atgcagacgg tggatgagcg gcagcgcgcg gcctacctgg cgccctacgt
     2821 cgccggcaag accatctcgg ccatcggcat ctccgaaccc ggcgcggggt ccgacccggc
     2881 cggcatgacc accaaggccg taagagacgg agaagattgg gtaattaacg gccggaagat
     2941 ctggatttcg cgcgccgctg acgccgattt caccatcctg atggcgctga ccgacaccga
     3001 gaagcgggcg cgcggcggca tctcggcgtt cctggtggac aaggggacgc ccggcttcaa
     3061 cgtgctcaga cgcatcccga tgatcggcgg cgcctacacc tatgagatcg cgctggagga
     3121 ttgccgggtc gagggctgga agctcttggg ccaggagggc gcgggatttg cgccgatgca
     3181 gacccggctc ggcacccggc gcatccagat ggcggcctgg tcggtgggca tggcgcagcg
     3241 ggcgctggac atgatcgttg agtacgcccc gcagcggaag accttcggca tgcccctgag
     3301 cgagcggcag gcgatccagt tctgggtggc cgaggcggcg accaagatcc acgccacccg
     3361 cctgatgacc tacgactgcg cctggaagct cgaccagggc cgcgatgtcc gaaacgagat
     3421 ctcgatgatc aagtggtacg ccaccgagat ggcctatgag accgtggacc gggccatgca
     3481 ggccttcggc gccatgggca tgaccaagga gctgccgctg gcgcagatgc aggccaagct
     3541 gcggaccatg cgcatctacg acgggcccac cgaggtccac aaatgggtgg tggcccgcaa
     3601 tctgttgggg acgcgaaaat gaagaccgct ttcggagatc acgtgacggt tgcggccgac
     3661 ggccacgtcg ccgtcgtcac catcgacaag ccgccgcaca accacgtgtc ggtggacctg
     3721 atgcgcgacc tggccgacgc cttcgacgcc gtcgatgcgg aggtgacctt gcgctgttcg
     3781 gtgctgcaga ccgagggcaa gaacttctgc gccggggcgg atctggtgcg gcgcgaggat
     3841 gcgggcgggc tgggcgccgt caacccgctc tacgaccagg cggtcaggct gttctcggcc
     3901 aagaagccca tcgtggcggc ggtgcagggc gctgcggtcg gcgcgggcct gggcctggcg
     3961 gtgatggccg acttccggat cgcctcgccc gacgcgcggt tcgcggccaa tttcgtgaaa
     4021 ctggggttcc acccggggtt cgggctcacc cacaccctgc cccggctgat cgggcccacc
     4081 aaggccgagc tcatgtgcct taccggccgg cgcgtgaagg ccgaggacgg tctaccctgg
     4141 ggcctcgtcg acgaggtcgc gccgctggag gatctgcgga gcacagcgct ggcgctggcc
     4201 agggagattg ccgaaaacgc gccactggcc atcgtctcca cacgcaagac catgcgcggc
     4261 gacctggccg ccgccgtccg cgcccagacc gacgtggagg ccgccgaaca gggctggctg
     4321 cgcgacacgg cggactacaa ggaaggcgtc ctgtcggtct ccgagcgtcg ggtgggaaac
     4381 tttacggggc gctaaggcgc ggcgggcgcc cccggtaacc gacccgcctg cctgggtact
     4441 gcggcgtcac cttggtcgtc gtcgtgacct gatccgaagg cgtggccacg gcgccggttg
     4501 atgtcgtcgt ggtccggcgc gtcaccttgg tgtgcgtggt gtgatgggtg gtggccggat
     4561 gcgaggtcgt gacggtggtc tcgacctgag gcgcgggggg cggggtctcg gcggccagcg
     4621 cagcggcgct gcgggcggcg gccgcgtcgg ccgcggaagc cgccgcggat tgctgggcgg
     4681 attcggcgcg cgcgttggcg tccgccgcct gctgctgggc gatggcggcc tgttgctggg
     4741 cgtcgcgcgc ctggtcctgg gc
//
LOCUS       DATAJL010000456         1634 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_82197,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000456 DATAJL010000000
VERSION     DATAJL010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82197"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..298
                     /locus_tag="VHN39_08770"
     CDS             <1..298
                     /locus_tag="VHN39_08770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816474.1"
                     /translation="TQAEFTAKRYTALKTFPYDDVTIGRTAGDASCSDVKENGGMGFG
                     TDRVCQFTSPATLTVVSPAGSWFFVPGAGQPSTLIIHKGAPRCVMASKFTLQTE"
     gene            complement(308..1570)
                     /locus_tag="VHN39_08775"
     CDS             complement(308..1570)
                     /locus_tag="VHN39_08775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiH/UbiF/VisC/COQ6 family ubiquinone
                     biosynthesis hydroxylase"
                     /protein_id="HEX2816475.1"
                     /translation="MTEAATPKDVDVIIAGAGIAGATLALALHQAGLKPVLIDPVVFD
                     AQVAPTFDGRASAIAYAAFRQWKALGVGAALEPHAQRIEQILVTDGQTPGAASSGTGP
                     FFLRFDSAEIADSSDGEPLGYLLENRHIRAALAKAVIDAGIEVLAPARVASAAFGPRE
                     AEVTLADGRTLHAPVAVGAEGRGSVIRTEAGIGAVGWDYPQTGVVATVRLARPHEGVA
                     HEYFLPGGPFAILPLTGDRASLVWTESRSRGAALKAARPEIFHAHLQRRFGDFLGEAT
                     VEGPVFTYPLSLQLAERLVAPRAALLGDAAHGVHPIAGQGLNLGLKGAAALAETLVEA
                     MRLGEDIGSEAVLERYAAWRRFDTVTLSAGMDAFVRLFSNDNPLLRLARGAGMAAVNR
                     IGPARRFFMTEAGGAVGDLPRLLKGEAL"
BASE COUNT          236 a          600 c          578 g          220 t
ORIGIN      
        1 gacgcaggcc gagttcaccg ccaagcgcta cacggcgctg aagaccttcc cctatgacga
       61 cgtcaccatc ggccgcaccg ccggcgacgc cagctgctcc gacgtgaagg aaaacggcgg
      121 catgggcttc ggcacggacc gggtctgtca attcaccagc ccggcgaccc tgacggtcgt
      181 ctcgccagcc ggcagctggt tcttcgtccc cggcgccggc caaccctcga ccctgatcat
      241 ccacaagggc gcgccccggt gcgtgatggc gtcgaagttc acgctgcaga cggagtagga
      301 gcggcgctta cagcgcctcg cccttcagca gccgtggcaa gtcgcccacc gcgccgccgg
      361 cctcagtcat gaagaaccgc cgggcggggc cgatgcggtt cacggccgcc atcccagcgc
      421 cgcgcgccag acgcagcagg gggttgtcgt tggagaacag cctcacgaag gcgtccatgc
      481 cggcgctgag ggtgaccgtg tcgaacctcc gccaggccgc atagcgctcc agcaccgcct
      541 ccgagccgat gtcttcgccc aggcgcatgg cctcgacgag ggtctcggcc agggccgccg
      601 cgcccttcag gcccaggttc aggccctggc cggcgatggg gtggaccccg tgggcggcgt
      661 cgcccagcag ggccgcgcgg ggggcgacca ggcgctcggc cagctgcagg ctgagcggat
      721 aggtgaagac cgggccctcg accgtcgcct cgcccaggaa gtcgccgaac cggcgctgca
      781 ggtgggcgtg gaagatctcc ggccgcgcgg ccttcagcgc ggcgccgcgg ctgcggctct
      841 cggtccagac caggctcgcc cggtcgccgg tgagcggcag gatggcgaag ggtccgcccg
      901 gcaggaaata ctcgtgcgcc acgccctcgt gcgggcgggc cagccgtacg gtggccacca
      961 cgccggtctg gggatagtcc cagccgacag cgccgatccc ggcctcggtg cggatcaccg
     1021 agccccggcc ctccgcgccc acggcgacag gggcgtgcaa ggtccggcca tcggcgagcg
     1081 tcacctccgc ctcgcggggt ccgaaagccg cgctggccac ccgcgccggg gccagcacct
     1141 cgatgccggc gtcgatcacg gccttggcca gcgcggcgcg gatgtggcgg ttttccagga
     1201 ggtaacccag cggctcgccg tccgagctgt cggcgatctc tgccgagtcg aagcgcagga
     1261 agaagggtcc cgtcccggac gaggccgcgc ccggcgtctg gccgtcggtg accaggatct
     1321 gctcgatccg ctgggcgtgc ggctccagcg ccgcgccgac tccgagggct ttccattggc
     1381 ggaaggccgc ataggcgatt gctgaggctc tcccgtcgaa ggtcggagcg acctgggcgt
     1441 cgaacaccac cgggtcgatc aagacgggct tcagcccggc ctgatgcagc gcgagcgcca
     1501 gcgtcgcgcc ggcgatcccc gcgccggcga tgatgacgtc cacgtccttc ggtgtggccg
     1561 cctcggtcat ggcctcaggc ttccgcctcg tcctcggcga agcccatgat gtggaagccc
     1621 gcgtccacgt ggat
//
LOCUS       DATAJL010000457         1600 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106597,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000457 DATAJL010000000
VERSION     DATAJL010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1600)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1600)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1600
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106597"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VHN39_08780"
     CDS             <1..242
                     /locus_tag="VHN39_08780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816476.1"
                     /translation="GGPSAGGGSGGGGGGFAPTPEMAAVFAEVRKACASDSAKLCPGL
                     EGRESMMCIRQNEDKLSGACKAARAKMPHRPPAGG"
     gene            271..>1600
                     /locus_tag="VHN39_08785"
     CDS             271..>1600
                     /locus_tag="VHN39_08785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2816477.1"
                     /translation="MNPSRPFILRPVATALLMVAIVLAGLVGFKLLPLSALPEVDYPT
                     IQVSTLYPGASPEVMAQTVTAPLERQFGQMSGLERMTSTSSAGASEITLQFTLAASLD
                     VAEQEVQAAINAGATLLPADLPAPPIYAKVNPADAPVLTLAVTSDTVPLPDVQNMVDT
                     RLAQKISQVPGVGLVTLSGGQRPAVRIQVDTQSLASFGLTLTSVRNAISAANANTAKG
                     SFEGPTRSYSINANDQLLTAQDYGNLIIATRNGGSVRLSDVAKVIQGAENIRLGAWSG
                     KTPAILVNVQRQPGANVIKTVDAIKAQLPDLTAALPPSLKVAVLSDRTLGIRASVHDV
                     ELELLLAVVLVVLVIFFFLHSLRATIIAGLAVPISLIGTCGITYLLGFSLNNLSLMAL
                     TIATGFVVDDAIVMLENISRHIEDGEPPFDAALNGAKQIGFTIISLTVSLL"
BASE COUNT          261 a          582 c          512 g          245 t
ORIGIN      
        1 gcggtgggcc gagcgcgggc ggtggcagcg gtggaggtgg cggtggcttc gcacccacgc
       61 cggagatggc cgcagtcttc gccgaggtcc gcaaggcctg cgcctcggac agcgccaagc
      121 tctgccccgg ccttgaaggc cgcgagtcga tgatgtgcat ccgtcagaac gaggacaagc
      181 ttagcggcgc ctgcaaggcc gcccgcgcca agatgcccca ccggccaccg gccggcgggt
      241 gaggactaga gcccaggctg gccaaaacgg atgaacccgt cacgcccctt catcttgcga
      301 cccgtcgcga ccgccctcct catggtggcg atcgtgctgg cggggctcgt gggcttcaag
      361 ctcctgccgc tctcggccct tccggaggtg gactacccga ccatccaggt ctcgaccctc
      421 tatcccggcg cgagcccgga ggtgatggcc cagacggtga ccgcgcccct ggaacggcag
      481 ttcggccaga tgtccggact ggagcggatg acctcgacca gctccgccgg cgcctcggag
      541 atcaccctgc aattcacgct ggccgccagc ctcgacgtgg ccgagcagga agtgcaggcc
      601 gcgatcaacg ccggcgccac gctgctgccc gccgacctgc cggcgccgcc gatctacgcc
      661 aaggtgaatc ccgccgacgc gccggtcctg acactggccg tcacctccga caccgtgccc
      721 ttgcccgacg tgcagaatat ggtcgacacg cggctggccc agaagatcag ccaggtgccg
      781 ggcgtgggcc tggtgacgct ctccggcggg caacggccgg ctgtgcgcat ccaggtggac
      841 acccagtcgc tggcctcctt cggactgacg ctcacctcgg tgaggaacgc catcagcgcg
      901 gccaacgcca acaccgccaa gggcagcttc gagggcccaa cgcgcagcta ctcgatcaac
      961 gccaacgacc aactgctgac cgcccaggac tacgggaacc tgatcatcgc cacgcgcaac
     1021 ggcggctcgg tcaggctgtc ggacgtggcg aaggtgatcc agggcgccga gaacatccgg
     1081 ctgggcgcct ggtcgggcaa gacgcctgcg atcctcgtca acgtccagcg ccagcccggc
     1141 gccaacgtca tcaagaccgt cgacgccatc aaggcccagt tgcctgacct cacagcggcg
     1201 ctcccgccgt cgctgaaggt ggcggtgctg tccgaccgca ccctgggcat ccgcgcctcg
     1261 gtccatgacg tggagctgga gctcctgctg gccgtcgtcc tggtggtgct ggtgatcttc
     1321 tttttcctgc actccctccg agcgacgatc atcgcgggcc tggcggtgcc gatctcgctg
     1381 atcggcacct gcggcatcac ctacctgctg ggtttcagcc tcaacaacct gtccctgatg
     1441 gcgctcacca tcgccaccgg cttcgtggtc gacgacgcca tcgtcatgct cgagaacatc
     1501 agccgccaca tcgaggatgg cgagccgccg ttcgacgcgg cgctgaacgg cgccaagcag
     1561 atcggcttca cgataatatc gctgaccgtc tcgctgctgg
//
LOCUS       DATAJL010000458         2201 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58056,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000458 DATAJL010000000
VERSION     DATAJL010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58056"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VHN39_08790"
     CDS             <1..657
                     /locus_tag="VHN39_08790"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0015803 - branched-chain amino acid
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEX2816478.1"
                     /translation="ALGLFMERTGVRLALEQKSEGWILMTIILGLFFGSLAENIWGRD
                     DRPFPTPISSNPIHVLGVDVTPVELSVAVGVFAVMGLVEIFKRQTLLGKAFEAISADR
                     DAGELMGISATRTIMLSYALSGVVAALAGILVSPITTVGPTMASALVLKAYSVAVVAG
                     LESGFGVVLVGMFLGALESVASFELGSGWREAPGLVLLILALAVRPTGIFGKAMIRKV
                     "
     gene            676..>2201
                     /locus_tag="VHN39_08795"
     CDS             676..>2201
                     /locus_tag="VHN39_08795"
                     /inference="COORDINATES: protein motif:HMM:NF014684.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2816479.1"
                     /translation="MKRLLLIRGAELLMFVVLLAVPLGIANPYVLGLLTLLAIYGILL
                     IGLDVSVGYLGQVNLAQAAFLGLGAYTAGILVSRYHVGFAVACLAAFAMCLLLGALLA
                     LPALRLEGPRFALATLSFTALCTTSLNEMEWLTNGAQGLNVMRPPFFGQALGARGFYW
                     MCMVFLAAVWLGMRNVLDSQWGRAFEALRDSPIATDAMGVGTFRYKVAGFAFGSALGG
                     LAGALYAFNFQYLEPGTYVYALTVFLLLGVVLGGRKSLWGAFVGAALVALLPNLLSNK
                     GLFTTLSALGFLLAAFAGVRGLMSKRTKPFQAIAPIVSTGMLVAGGFLVSNTEDWRTA
                     IFALMLFSVVVGLPQGLMGFAAAALSKLFRIPPQPLPEPSPLESVLPARREGSNTVLL
                     ELRDLKRHFGGVKAVDGLSMKVLAGQVHGLIGPNGSGKSTVVNVVSGLYTPTSGSILL
                     RGQPLAQGSLFKTSRAGVARTFQNLQLFTGMTAVENVMVALKGAYPRSRYLPLVLLGL
                     G"
BASE COUNT          278 a          756 c          727 g          440 t
ORIGIN      
        1 gccctggggc tcttcatgga acgcaccggt gtgcggctgg cgctggagca gaagagcgaa
       61 ggctggatcc tgatgaccat catcctcggc ctcttcttcg gatcgctggc cgagaacatc
      121 tggggccgcg acgaccggcc ctttcccacg cccatctcgt cgaatcccat ccacgtgctg
      181 ggagtggatg tgacgcccgt cgagctgtcg gtggcggtcg gcgtcttcgc ggtgatgggt
      241 ctggtcgaga tcttcaagcg ccagacgctg ctcggcaagg ccttcgaggc catctctgcc
      301 gaccgcgacg ccggcgaatt gatgggcatc tccgccaccc gcaccatcat gctctcctac
      361 gcgctgtccg gcgtcgtcgc ggccctggcc ggcatcctcg tctctccgat caccaccgtc
      421 ggccccacca tggcctccgc gctggtcttg aaggcctact cggtggcggt ggtcgcgggg
      481 ctcgagtccg gcttcggcgt cgtcctggtg ggcatgtttc tgggcgcgct ggagagcgtg
      541 gcgagcttcg agctcggcag cggctggcgc gaggcgcccg gcctcgtgct gctgattctt
      601 gccttggccg tgcgcccgac gggcatcttc ggcaaagcca tgatccgcaa ggtttgacgg
      661 gagctcgaca acgcaatgaa gaggctccta ctcatccgcg gcgccgagct cctgatgttc
      721 gtggtgctcc tggccgttcc gctgggaatc gcaaacccgt acgtgctggg cctgctcacg
      781 ctcctggcca tctacggcat cttgctcatt gggctggacg tctcggtcgg ctatctcggg
      841 caggtcaacc tggcgcaggc cgcgttcctg ggccttggtg cgtacacggc gggaatcctg
      901 gtctcgcgct accacgtggg cttcgcggtt gcgtgcctcg cggcgttcgc catgtgcctt
      961 ctcttgggcg cgctcctggc cctgccggcg ctgcggctcg aagggccccg cttcgcgctc
     1021 gctaccttga gcttcaccgc gctctgcacc acctccctga acgaaatgga gtggctgacc
     1081 aacggcgccc aaggcctgaa cgtgatgcgg cctccgttct tcgggcaggc cctcggagcg
     1141 cgcggcttct actggatgtg catggtgttc ctggccgcgg tgtggctggg catgcgcaac
     1201 gtcctcgact cgcagtgggg ccgcgccttc gaagcgctgc gcgacagtcc catcgccacc
     1261 gacgccatgg gcgtgggcac cttccgctac aaggtggcag ggttcgcctt tggctcggcc
     1321 ctgggcggcc tcgccggggc gctctacgcc ttcaacttcc aatacctgga gccggggacg
     1381 tacgtgtacg cgctcaccgt cttcctgctc ttgggagtgg tgctgggcgg gcgcaagagc
     1441 ttgtggggcg ccttcgtggg cgcggcgctg gtggcgctct tgcccaacct gctctccaat
     1501 aaaggactct tcaccacgct ctccgcgctg ggcttcctgc tggcggcctt cgccggcgtg
     1561 cgcggcctga tgagcaagag aaccaagccg ttccaggcca tcgcgcccat cgtctcgacc
     1621 ggcatgttgg tggcgggcgg cttcctggtc tccaacaccg aggactggcg caccgccatc
     1681 ttcgccttga tgctcttctc ggtggtggtc ggcctgcccc aaggattgat gggcttcgcg
     1741 gcggcggccc tctcgaagct tttccgcatt ccaccccagc cgctgcccga gccgtcgccg
     1801 ctggagagcg tcttgccggc gcggcgcgag ggttcgaaca cggtgctgct cgagctgcgc
     1861 gatctcaagc ggcacttcgg cggcgtcaaa gctgtcgatg ggttgtcgat gaaggtgctg
     1921 gccggccagg tgcacggcct catcggcccc aacggctcgg gcaagagcac ggtggtcaac
     1981 gtcgtctccg gcctctacac gcccacctcg ggctcgatcc tgctgcgggg ccagccgctc
     2041 gcccagggaa gtctttttaa aacctcgcgg gccggcgtcg cgcgcacctt ccagaacctg
     2101 cagctcttca ccggcatgac cgccgtcgag aacgtgatgg tggccttgaa gggcgcctat
     2161 ccgcgctcgc gctacttgcc gctggtgctc ctgggcctgg g
//
LOCUS       DATAJL010000459         3591 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58069,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000459 DATAJL010000000
VERSION     DATAJL010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58069"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1037)
                     /gene="rodA"
                     /locus_tag="VHN39_08800"
     CDS             complement(<1..1037)
                     /gene="rodA"
                     /locus_tag="VHN39_08800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEX2816480.1"
                     /translation="MTVSALTRPGERDRLINKIGEIDWLFCLTITLIAVAGAVMLFSI
                     AGSSWKPWAAAHLARYALFFAIMIVLSLVDIRVWFAVAYPVYGIGFLLLIAVMFVGHH
                     ALGAQRWLQAGPITIQPSEIMKIGLVLALARFYHGLSGKSAQLSWWLLVPALLILAPV
                     ALVAKQPDLGTAILMLATGAIVVVLAGLSWRLIAAGFLAIAVLVPPVIMFGLHGYQKQ
                     RLTTFLNPEADPSGAGYHNLQSSIAIGSGGLLGKGYGLGSQSQLNFLPEKQTDFIFAT
                     LAEEFGFVGCVSILVLYAAVIFMALRTSYLSHSHFGRLAAAGVTATFALYVLINGSMV
                     MGLAPVVGVPMP"
     gene            complement(1034..3001)
                     /gene="mrdA"
                     /locus_tag="VHN39_08805"
     CDS             complement(1034..3001)
                     /gene="mrdA"
                     /locus_tag="VHN39_08805"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEX2816481.1"
                     /translation="MAEPSIFFAEVNERQGVFHRRAFLLGGFAGVGLLALGGRLAHLQ
                     LIETQHYEKLSASNQFNFKMTPPPRGLIVDRNGVVLASNRPNFRLMVAKDKGMDPAAT
                     VKTLAEFVPLDDTRQARLLKDIANAPRRSPVQVMEDMTWEQFSAINIRAPELPGVTAD
                     MGEVRVYPYGGAFAHVIGYVAKVNKSDLTPTGPNADPILLNPGFRIGRQGVEEAFDLN
                     LRGKPGAQKVEVDANGHEVSTDPAGDIKAIPGKEIVLTLDADIQNRAMEVFGDESGAA
                     VMMDCRNGDILCMFSGPSFDANRFVRGLTGAEYRALAQYERKPLFNKALTATYPPGST
                     FKTMVALAALENGYDPKTVHVCNKVWFWGGRPWHCDEAHGALDLTGGIAKSCDIYFYQ
                     CALAVGPDKIAKTAREFGLGEIFDISIPGQKAGLVPDTAYKRRQFPKDPVWHPGETPS
                     MGIGQGYTHLNPLQLCVQASRLANGRKALHPRLIHSIGGVVQPSGAAFGDLPFSTENL
                     DFVRNAMVVVTTSGTAARFGDLGLGDVRMAGKTGTAQAFGYATGHGVHDRAGEWKYRD
                     HSWFIAFAPTDVPRYALSVLVEHGGFGATSAAPRAREIMRVALLKDPEIRARVEKPLP
                     MPEVPPAQTDPDVVDPPGPVDPSAPTGTPVA"
     gene            complement(3013..3474)
                     /locus_tag="VHN39_08810"
     CDS             complement(3013..3474)
                     /locus_tag="VHN39_08810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816482.1"
                     /translation="MLQVIAATILFGIPLRAFGLQLPEPIFPMALAFAWAVIRPSILA
                     PFGILLLGLFLDIFWGGPMGLWALCLLIAYGGALAGRSMMAGQNRAVLWAWYGVTTAT
                     AMVAGYLFVMLDSRSTPGLVPMAWQFVATIVLYPFANHLIEMFEDADVRFR"
BASE COUNT          616 a         1149 c         1273 g          553 t
ORIGIN      
        1 ggcatgggga cgcccaccac cggcgccagg cccatcacca tcgagccgtt gatcaggacg
       61 tagagcgcga aggtcgccgt gaccccggcc gccgccagcc ggccgaagtg gctgtgcgac
      121 aggtaggagg tccgaagcgc catgaagatc accgcggcgt agagcaccag gatcgagacg
      181 cagccgacga aaccaaattc ctcggccagg gtcgcgaaga tgaagtcggt ctgcttctcc
      241 ggcaggaagt tgagctggct ctgcgagccc aggccgtagc ccttgcccag gaggccgccc
      301 gagccgatcg cgatgctgga ctgcagattg tggtatccgg cgccagacgg atcggcctcc
      361 gggttgagga aggtggtcag ccgctgcttc tggtagccgt gcagtccgaa catgatcacc
      421 gggggcacga gcacggctat ggccaggaac cccgccgcga tgaggcgcca ggagagccct
      481 gccagcacca ccacgatcgc tccggtggcc agcatcagga tagcggtgcc aaggtcgggc
      541 tgcttggcta ccagggccac gggcgcgagg atcagcaggg ccggaaccag cagccaccag
      601 gacagctggg cgctcttgcc cgacaggccg tggtagaacc gcgccagggc taggacgagg
      661 ccgatcttca tgatctccga gggctggatg gtgatcggcc cggcctgcag ccatcgctgg
      721 gcgccgagcg catggtgccc cacgaacatc accgcgatca gcagcaggaa gcctattcca
      781 tagacgggat aggccaccgc gaaccagacg cggatgtcga ccaggctgag cacgatcatg
      841 atcgcgaaga agagggcgta gcgcgccagg tgggccgctg cccacggttt ccaggacgat
      901 cccgcgatcg agaacagcat caccgcgccg gccaccgcga tcagggtgat ggtcaggcag
      961 aacagccagt cgatctcgcc gatcttgttg atcaggcggt cgcgttcgcc gggacgggtc
     1021 agggctgaga cggtcatgcg acgggagttc ccgtaggtgc agagggatcg accggtcccg
     1081 gcgggtccac aacatcggga tcggtctgcg ccggggggac ttccggcatc ggcagtggct
     1141 tctcgacgcg cgcgcggatt tccgggtcct tgagcagcgc cacacgcatg atctcgcggg
     1201 cccggggcgc agccgaggtc gcgccgaaac ctccgtgctc caccaggacg ctcagggcgt
     1261 agcgcgggac gtcggtgggc gcgaaggcga tgaaccagga gtggtcgcgg tatttccatt
     1321 cgccggcccg atcgtgcacg ccgtggccgg tggcgtagcc gaaggcctgg gccgtcccgg
     1381 tcttgccggc catccgcaca tcgccaaggc cgaggtcgcc aaaccgggcg gcggtcccag
     1441 aggtggtcac caccaccatg gcgttgcgca cgaaatcgag gttctccgtc gagaacggca
     1501 ggtcgccgaa ggccgccccg gagggttgca ccacgccgcc gatggaatgg atcaggcgcg
     1561 ggtgcagggc cttgcggccg ttggccaggc gtgaggcctg cacgcagagc tgcagcggat
     1621 tgaggtgggt gtagccctga ccgatgccca tgctgggggt ctcgccggga tgccacaccg
     1681 ggtccttcgg gaactggcgc cgcttgtagg cggtgtcggg caccaggccc gccttctggc
     1741 cggggatgga gatgtcgaag atctcgccca gcccgaactc gcgagcggtc ttggcgatct
     1801 tgtccgggcc cacggccagc gcgcattggt agaagtagat gtcgcaggac ttggcgatcc
     1861 cgccggtcag gtcgagcgcg ccgtgcgcct cgtcgcagtg ccagggtcgg ccgccccaga
     1921 accagacctt gttgcagacg tggacggtct tgggatcgta gccgttttcc agggcggcga
     1981 gcgctaccat ggtcttgaag gtcgagccgg gcggataggt ggcggtcagc gccttgttga
     2041 acagtggctt gcgctcgtac tgcgccagcg cccggtactc cgcccccgtc aggccgcgca
     2101 cgaagcggtt tgcgtcgaag ctggggccgg agaacatgca caggatgtcg ccgttgcggc
     2161 agtccatcat caccgcggcg ccgctctcgt cgccgaacac ctccatggcg cggttctgga
     2221 tgtcggcgtc gagggtgagc acgatctcct tgccggggat cgccttgatg tcgccggccg
     2281 ggtcggtgga gacctcgtgg ccgttggcgt cgacctccac cttctgggcg cctggcttgc
     2341 cgcgcagatt gaggtcgaag gcctcctcga ctccctggcg gccgatgcgg aagccggggt
     2401 tcagcaggat cgggtcggcg ttcggtcctg tgggcgtcag gtcggacttg ttgaccttgg
     2461 ccacatagcc gatcacgtgg gcaaaggcgc cgccataggg atagactcgg acctcgccca
     2521 tgtcggcggt gaccccgggc agctccggcg cgcggatgtt gatcgcgctg aactgctccc
     2581 aggtcatgtc ctccatcacc tggacgggcg agcggcgggg cgcgttggcg atgtccttca
     2641 ggaggcgcgc ctggcgcgtg tcgtccaacg gcacgaactc ggccagcgtc ttgaccgtcg
     2701 cggcgggatc catccccttg tccttggcca ccatcaaccg gaagttcggg cgattggaag
     2761 ccagcaccac gccgttgcgg tcgacgatca ggccgcgcgg cggcggcgtc atcttgaagt
     2821 tgaactggtt ggaggccgac agcttctcgt agtgctgggt ctcgatcagc tgcaagtggg
     2881 cgaggcgtcc gcccagcgcc agcaggccca cgcctgcgaa accgcccagc aggaaggccc
     2941 ggcgatggaa gaccccttgc cgttcgttga cctcggcgaa gaagattgat ggttcggcca
     3001 ttccgggcgc ctctaccgga accttacgtc tgcgtcttcg aacatctcga taagatggtt
     3061 ggcaaacgga tagagcacaa tcgtggcgac gaattgccac gccatgggaa ccagccccgg
     3121 cgtcgagcgc gaatccagca tgacgaagag gtagcccgcg accatggcgg tggcggtggt
     3181 gactccgtac caggcccaca ggaccgcgcg gttttggccg gccatcatgc tgcgcccggc
     3241 gagcgccccg ccgtaggcga taagcaggca gagcgcccac agacccatgg gtccgcccca
     3301 gaagatgtcc aggaacagcc ctagcagcag gatgccgaag ggcgccagga tcgagggccg
     3361 gatcaccgcc caggcaaagg ccagcgccat cggaaagatg ggctcgggaa gctgcaagcc
     3421 gaaggcgcgg agcgggatgc cgaacaggat cgtggccgcg atcacctgca gcatcggcac
     3481 gcccagccag cgccagggct cgaggggccg tgcggcgctc aaggttgcgc cccgtccgcg
     3541 ggcggtttgg gcttgggctt tggcgaccca tccgacttgg ccgccgacgt c
//
LOCUS       DATAJL010000460         1877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8082,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000460 DATAJL010000000
VERSION     DATAJL010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8082"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..509)
                     /locus_tag="VHN39_08815"
     CDS             complement(<1..509)
                     /locus_tag="VHN39_08815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HEX2816483.1"
                     /translation="MSKIIGIDLGTTNSCVAIMDGKTPKVIENAEGARTTPSVVAFLE
                     DGERLVGQPARRQGVTNPTNTLFAIKRLIGRQMTDPMVEKDKGMVPYEIVKGPNGDAW
                     VRAHGTDYSPQQVSAFILQKMKEAAEQHLGEKVEKAVITVPAYFNDAQRQATKDAGKI
                     AGLEVLRII"
     gene            876..1751
                     /locus_tag="VHN39_08820"
     CDS             876..1751
                     /locus_tag="VHN39_08820"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008264418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2816484.1"
                     /translation="MVTLTRAEGTWTGDLDLTRRSIALALAGGYAVAAFDANADPIHT
                     DEAGLVTETVEIQAADRKIPGYLARPAAPSSAKGGRHPVVFVNSEVFGVHEWVKDICR
                     RLAKAGYVALAPDLFVRTGDPSKTTDMKVVMDIVKAQPEAQVLGDTAASLKYLKAQPF
                     TDMKRLGTTGFCWGGGAVWRDCESFPEFKAGVAWYGPLKAGPYPRIPPLDGVKDLKCP
                     VLGLYGGKDQGIPAADIEAMRAAIKAAGKTAEIIVYPDSQHGFLADYRPSYDAKASAD
                     AWPKMLAFFKANGVA"
BASE COUNT          303 a          633 c          613 g          328 t
ORIGIN      
        1 ttgatgatcc gcaggacttc gaggccggcg atcttgcccg cgtccttggt cgcctggcgc
       61 tgagcgtcgt tgaaataggc cgggacggtg atgaccgcct tttcgacctt ctcgccgagg
      121 tgttgctcgg cggcttcctt catcttctgc aggatgaagg ccgagacctg ctggggtgaa
      181 taatccgtgc cgtgggcgcg cacccacgcg tcgccgttcg ggcccttgac gatctcgtag
      241 ggcaccatgc ccttgtcctt ctccaccatc ggatcggtca tctggcggcc gatcaggcgc
      301 ttgatggcga acagggtgtt ggtcggattg gtgacgccct ggcgccgcgc gggctggccc
      361 accaggcgtt cgccgtcttc caggaaggcc acgacggacg gcgtggtgcg cgcgccctcg
      421 gcgttttcga tcactttcgg cgtcttgccg tccatgatgg cgacgcacga attggtcgtg
      481 ccgaggtcaa taccgataat cttgctcatt gagagtctag ctcgctcctt gttggcggac
      541 gttacgggga ggccttcaaa aggaagcgcc tcggtcttgc aacgtccccg gttcgatcag
      601 gtctaggccg ggctccgcgg tagaggttta ctcgcacgct acccgtcgat gccagccgat
      661 atggggaaaa taggcgcact cgcaagggtg aaagtcccca atcgcaccaa ggacatgagt
      721 caatcgttac ccgccacggc ccggcgaccg gcgccataac ggccgattct ccgcccccag
      781 agcgctcggc cggcttacat cgtcactttg actccctgcg tcccggcgcc gcagtgtcgg
      841 cggtaacaac aaccataacc tctcggaggc atcccttggt cactctcacc cgcgccgaag
      901 gcacctggac cggcgatctc gacctgaccc gccgctccat cgcgctggcg ctcgccggcg
      961 gctatgccgt ggccgccttc gacgccaacg ccgatccgat ccacaccgac gaagccggcc
     1021 ttgtcaccga gacggtcgag attcaagccg ccgaccgcaa gatccccggc tacctggcgc
     1081 ggcccgccgc accctcttcc gcaaaggggg gcagacaccc ggtggtgttc gtcaattccg
     1141 aggtgttcgg ggtgcatgag tgggtcaagg acatatgccg ccgcctggcc aaggccggct
     1201 atgtggcgct cgcccccgac ctcttcgtac gcacgggcga tccgtcgaag accaccgaca
     1261 tgaaggtggt gatggatatc gtgaaggccc agccggaggc ccaggttctc ggcgacaccg
     1321 ccgcctcgct gaaatacctc aaggcccagc cgttcaccga catgaagcgg ctcgggacga
     1381 ccggcttttg ctggggtggc ggggccgtct ggcgcgactg cgagagcttc cccgagttca
     1441 aggccggcgt cgcctggtac ggaccgctga aggccggccc ctatccgcgc atcccgccgc
     1501 tcgacggggt gaaggacctg aagtgcccgg tgctcggcct ctacggcggc aaggatcagg
     1561 gcatcccggc agcggatatc gaggccatgc gcgcggcgat caaggcggcc ggcaagaccg
     1621 ccgagatcat cgtctatccc gacagccagc acggcttcct ggccgattac cggccaagct
     1681 acgacgcaaa agcctcggcc gacgcctggc ctaagatgct ggccttcttc aaggcgaacg
     1741 gagtggccta gcgcccgccg gagttagtgc ggcgcctctt ccgcggccgg cggtgggggc
     1801 ggcgcctcag ccgggacgac gacgggaagc ttgggcgggg ccgccgcggc agcctgggcc
     1861 tcgggcgtgg tcgcggc
//
LOCUS       DATAJL010000461         5399 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34124,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000461 DATAJL010000000
VERSION     DATAJL010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5399
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34124"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..851
                     /locus_tag="VHN39_08825"
     CDS             <1..851
                     /locus_tag="VHN39_08825"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrolipoamide acetyltransferase family
                     protein"
                     /protein_id="HEX2816485.1"
                     /translation="CDRRAEDLGIKLGHVAGTGPAGHITHEDLDAFIASGGSAGVAQG
                     PSLAKRMAVEEVKVIGMRRAIARQMQESKRRIPHFAYVEEVDMTELEELRVHLNATKR
                     ADQPKLTMLPFLMRALVRVLPAYPQINARFDDEAGVVHRYAGVHMGIATQTSNGLIVP
                     VVKHAEALDVWAAATEVARVAEIARSGKGSKDDLSGSTITVTSLGPLGGIATTPVINH
                     PEVAIIGPNKIVDRPVVRHGQIAVRKMMNLSSSFDHRVVDGYDAAEFIQRVKAVLEHP
                     ATLFMD"
     gene            856..2280
                     /gene="lpdA"
                     /locus_tag="VHN39_08830"
     CDS             856..2280
                     /gene="lpdA"
                     /locus_tag="VHN39_08830"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEX2816486.1"
                     /translation="MPTETGAETITTRLLIVGGGPGGYVAAIRAGQLGIETVLVEGDR
                     LGGTCLIRGCIPSKALIHVASKFEGMAHAVGGAKDGISLKSAPVLDMAQTVAWKETVV
                     DKLNGGVTALLKRAKTRVVAGWGRFSDAKTCHVETKDGPITIKAETVILAAGSVASAL
                     PHIPFSPSGGGDVISSTEALALSDLPKRLVVIGAGYIGLELGSAFRKFGCEVTVVEAQ
                     DRILPLYDEPLTKPVKAWLEKAGVTLHLSAKATGWAKGELVVEQDGKTLRLPADKLLV
                     TVGRRANSDGWGLEEMGVDMAGAFVKVNDRMQTSMSGVYAIGDLVGEPMLEHKAAAQA
                     HVAVEVIAGQNRRFDPATIAAVCFTEPEIVSAGLLPKEAEAAGHDPVSAVFPFQANGR
                     ALSMEAGDTGGFVRVVARKSDHRVVGLQAVGAHVSELSGEFAMSIEMGARLEDLAGTI
                     HVHPTLSEAVHEAALRALGHAIHI"
     gene            2458..3114
                     /locus_tag="VHN39_08835"
     CDS             2458..3114
                     /locus_tag="VHN39_08835"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816487.1"
                     /translation="MANWAISPVRGHRLFCRQRSVYAVNTRKPRHMVGVGPMRKSLLV
                     ASGLVIALMASAPASASILYSFTAFSSFGFGPDSNEQFSGNFDLITPDFVTAGATFLP
                     SDLIDCAAVSNLGPATCTGEGFLTGFAGSDLTISFGVQGTTTGVGIFYYFVPAAFNTP
                     GSYDTVEFGADQAGHLVVTDLGGTSPGVPEPAAWTMMIAGFGLAGSALRRTRRQTATA
                     "
     gene            complement(3245..4168)
                     /locus_tag="VHN39_08840"
     CDS             complement(3245..4168)
                     /locus_tag="VHN39_08840"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase domain-containing protein"
                     /protein_id="HEX2816488.1"
                     /translation="MDQIAPHRARSLAEFGEFGGKLFVPADIGAALGSYRPRASDVVI
                     TPYGKCGTTWLQQIFHTLRTRGDFDFDDISRVVPWLETAVIVGVDLEAPQRAEPRGFK
                     SHLSHDAVPKGARYIVSLRDPKDAVVSFYRFMEGWILEPGAVSMGEFAQIWIAHGTGG
                     TDYWSHLLSWWNARDNPDVLVLSYEGMTAQPEATIRQVAAFCGMALDDELLALTLERS
                     SFDFMLANKDRFDDAMMRTASEARCNVPPGGDSAKVRKGGSGGHRAELSPEISAALDA
                     KWAEIVTPATGFADYAALEAEVRRRNARAPA"
     gene            complement(4256..4633)
                     /locus_tag="VHN39_08845"
     CDS             complement(4256..4633)
                     /locus_tag="VHN39_08845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816489.1"
                     /translation="MFSHIMIGTNDLTRAKSFYDAVLGTLGVPPGAVDRHRVFYRTPT
                     GVFSVSVPIDGEPATCANGGTVGFACADTAQADAWHAAGLANGGVSIEDPPGVREGAF
                     GNLYLAYLRDPDGNKICALHRMG"
     gene            4887..>5399
                     /locus_tag="VHN39_08850"
     CDS             4887..>5399
                     /locus_tag="VHN39_08850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816490.1"
                     /translation="MTLKTLSAGAATALALAALASGAQATVYNLALTGVVAHGTASFY
                     SSPYKFEIFTLDLGLGGAQPFTLQVGDEVRATVTLDTPLVVPQSGLDVVWTKLTNTDG
                     IGAPVDATTGLTGIGDLSGGTLGAGTGPLSGGCGNCLSNFILEHNGFSFDTFFSDVTV
                     SALAAPYEVNN"
BASE COUNT          842 a         1879 c         1828 g          850 t
ORIGIN      
        1 gatgtgaccg ccgggccgag gacctcggga tcaagctcgg ccatgtcgcc gggaccgggc
       61 ccgccggtca catcacccac gaggatctgg acgccttcat cgcatccggc ggaagcgccg
      121 gcgttgcgca gggcccgagc ctcgccaaac gcatggctgt cgaggaggtg aaggtcatcg
      181 gcatgcgccg cgcgatcgcg cggcagatgc aggagtccaa gcgccgcatc ccgcacttcg
      241 cctatgtcga ggaagtcgac atgaccgagc tggaggagct gcgcgtccac ctgaacgcca
      301 ccaagcgcgc cgaccagccc aagctgacca tgctgccgtt cctgatgcgc gccctggtgc
      361 gcgtgctgcc ggcctatccg cagatcaacg cgcgcttcga cgacgaggcc ggcgtcgtgc
      421 accgctatgc cggcgtccac atggggatcg ccacccagac ctcgaacggc ctgatcgtgc
      481 cggtggtgaa acacgccgag gcgctcgacg tctgggcggc ggccaccgag gtggcccgcg
      541 tcgccgagat cgcccgctca ggcaagggct cgaaggacga cctttcaggg tcgaccatca
      601 ccgtcacctc cctggggccg ctcggcggca tcgccaccac gccggtgatc aaccacccgg
      661 aagtcgccat catcggcccc aacaagatcg tcgaccggcc ggtcgtgagg cacggccaga
      721 tcgcggtgcg caagatgatg aacctgtcgt cgtccttcga tcaccgggtc gtggacggct
      781 acgacgcggc ggagttcatc cagagggtca aggccgtgct ggaacacccc gcaaccctgt
      841 tcatggactg accccgtgcc aactgaaacc ggggccgaga ccatcaccac ccgcctcctg
      901 atcgtcggcg gcggacccgg cggctatgtg gcggcgatcc gcgcgggcca gctggggatc
      961 gagaccgtgc tggtggaggg cgaccggctg ggcggcacct gcctgatccg cggctgcatc
     1021 ccgtcgaagg ccctgatcca cgtggcctcc aagttcgaag gcatggctca cgcggtgggc
     1081 ggcgccaagg acggcatctc gctcaagtcc gctccggtcc tcgacatggc tcagaccgtc
     1141 gcctggaagg agacggtggt cgacaagctg aacggcggcg tcaccgcgct tctgaagcgc
     1201 gccaagaccc gggtcgtggc cggctggggc cgcttcagcg acgccaagac ctgccacgtg
     1261 gagacgaagg acggcccgat caccatcaag gccgagacgg tcatcctggc ggccggctcg
     1321 gtcgcttcag ccctgccgca catcccgttc agcccctctg gcggcggcga cgtgatctcg
     1381 tccaccgagg cgctggcgct gagcgacctg cccaagcgcc tggtggtgat cggcgcgggc
     1441 tacatcggcc tggagctcgg ctcggccttc aggaagttcg gctgcgaggt caccgtggtc
     1501 gaggcgcagg accgcatcct gccgctctac gacgagccgc tcaccaagcc cgtgaaggcc
     1561 tggctggaga aggccggcgt caccctgcat ctctcggcca aggcgaccgg ctgggccaag
     1621 ggcgagcttg tggtggaaca ggacggcaag accctgcgcc tccccgccga caagctgctg
     1681 gtcacggtcg ggcgtcgggc caattccgat ggctggggcc tggaggagat gggcgtcgac
     1741 atggccggcg ccttcgtcaa ggtcaacgac cgcatgcaga cgtcgatgag cggcgtctac
     1801 gccatcggcg acctggtggg cgagccgatg ctggagcaca aggcggccgc ccaggcgcat
     1861 gtggcggtcg aggtcatcgc cggccagaac cgccgcttcg atccggcgac catcgccgcg
     1921 gtctgcttca ccgagccgga gatcgtctcg gcgggcctgc tgccgaagga ggccgaggcc
     1981 gccggccacg atccggtcag cgccgtcttc cccttccagg ccaatggccg ggcgctctcc
     2041 atggaagccg gcgacaccgg cggctttgtc cgcgtggtgg cgcgaaagtc cgatcaccgg
     2101 gtggtcgggc tgcaggccgt cggcgcccac gtctcggagc tctccggcga gttcgccatg
     2161 tcgatcgaga tgggcgcgcg gctggaggac ctggccggga ccatccacgt ccacccgacc
     2221 ctcagcgagg ccgtccatga ggcggcgttg agggcgctcg gccacgccat ccacatctag
     2281 gcggcgccgc catcccgcag aagatccgcg gctacggcca cgtcaaggac gcctccgtcg
     2341 gcccggccaa ggccgaggaa aaggcgctct ggagccgctg ggaagcaggc cgagacgaag
     2401 gtgctgggga cggcctgatc cacgccggcg tcgcatgggg cggcaaagcc cccacgaatg
     2461 gcgaattggg cgatttcccc tgtcagggga catcgcttgt tctgtcgtca acgatctgtt
     2521 tacgctgtca atacgcgaaa accgcgtcac atggtggggg tcgggcctat gagaaaatca
     2581 cttctggttg cgtcgggtct ggtgatcgcc ctgatggcgt cggcgccggc gagcgcctcg
     2641 atcctttaca gcttcacggc cttttcttcc ttcgggtttg gtccggatag caatgagcaa
     2701 ttcagcggca acttcgatct gatcacacct gacttcgtga cggcgggcgc gacctttttg
     2761 ccttccgacc tgatcgattg cgcggccgtt tcgaacctcg gaccggccac ctgcacaggt
     2821 gaaggcttcc tcaccggctt tgccgggtcg gacctgacca tctccttcgg cgtgcagggc
     2881 acgacgaccg gcgtgggaat cttctattat ttcgttccgg cggccttcaa cacgcccggc
     2941 agctacgaca ccgtggagtt cggcgccgat caggccgggc acctggtggt caccgatctg
     3001 ggcggaacct cgccgggcgt gcccgagcct gcggcctgga cgatgatgat cgccggcttc
     3061 ggcctggccg gcagcgcgct ccgccgcacg cgccgccaga ccgccaccgc ctagcggtcc
     3121 cagcgccgcc cgtgaaatcg ggcggacgtc agctcggcca cactgaggcc gacgccctac
     3181 ggcgtcggcc ttcgtcattt cgcccggcag ccgtcggccc atgaggtcgc gagaatgtcg
     3241 ccctctaggc gggagcccgg gcgttgcgcc gccgcacctc cgcctccagg gccgcgtagt
     3301 cggcgaagcc ggtggcgggc gtcacgatct cggcccactt ggcgtccagc gccgcgctga
     3361 tttccgggga gagctcggcc cgatgtccgc ctgagccgcc cttgcggacc ttggccgagt
     3421 ccccgccggg cggcacgttg cagcgggcct ccgaggccgt ccgcatcatc gcgtcgtcga
     3481 accggtcctt gttcgccagc atgaagtcga aggacgaccg ctccagcgtc agggccagca
     3541 gttcatcgtc gagcgccatg ccgcagaagg ccgcgacctg acggatcgtc gcctcgggct
     3601 gggcggtcat cccttcgtag gacaggacca gcacgtcggg attgtcgcgc gcgttccacc
     3661 agctcaagag gtggctccag tagtccgttc cgcccgtgcc gtgtgcgatc cagatctgcg
     3721 cgaattcgcc catcgacacc gcgcctggct ccagtatcca cccctccatg aagcggtaga
     3781 acgagaccac ggcgtccttg gggtcgcgta gcgagacgat gtagcgcgcg cccttgggca
     3841 cggcgtcatg ggagagatgg ctcttgaacc cgcgcggctc cgcgcgttgc ggcgcctcca
     3901 ggtccacccc cacgatcacc gcggtctcaa gccaaggcac gacgcgggag atgtcgtcga
     3961 aatcgaagtc cccgcgggtg cgcagcgtgt ggaagatctg ctgcagccag gtggtgccgc
     4021 acttgccata gggcgtgatc accacatcgc tcgcgcgcgg ccggtacgat cccagggccg
     4081 ccccgatgtc ggcggggacg aacagcttgc cgccgaactc gccgaattcg gcaaggctcc
     4141 gcgcgcggtg cggcgcgatc tgatccatgt gtaggtcccc ccggactgcc ggccttgcgt
     4201 cggtttccgg gattcacgtt acacgggttg gcgagcctgt cgacagcggg gccggtcagc
     4261 ccatgcggtg cagcgcgcag atcttgttgc cgtccgggtc gcgcagatag gccaggtaga
     4321 ggttgccgaa ggcgccctcg cgcacgccgg gcggatcctc gatggacacg ccgccattgg
     4381 cgaggccagc cgcatgccag gcgtcggcct gggcggtgtc ggcgcaggcg aacccgaccg
     4441 tcccgccgtt ggcgcaggtg gccggctcgc catcgatggg cacggagacg gagaagacgc
     4501 cggtcggcgt gcggtagaac acccggtgac gatccaccgc gcccggcggc accccgaggg
     4561 tccccagcac cgcgtcatag aacgacttgg cccgggtcag gtcgttggtg ccgatcatga
     4621 tgtgcgagaa catgtgtgag tctcccctct gtcgagtgcg gcctggggcg cgaactgcgc
     4681 tgcggcagat gggtagagtc ccgacgccgt tcggtcgagt cccgtccgtc aggatggacg
     4741 tcgcgtctcc cgtcgggggc gccatcgggc ggcgtgcaac tgcgcgacat ccaatcacgc
     4801 gcgatgcgcc tgggcgcagg ttccgcccgc gcctaggtgt ctgcctcccc gggggccgac
     4861 gccgcgccgg gccgtgagga tgcagcatga ccttgaagac cctaagcgcc ggcgccgcca
     4921 cagcgctcgc cctggccgcc ctggcctccg gcgcccaggc cacggtgtac aatctcgccc
     4981 tgaccggcgt cgtcgcccat gggaccgcca gcttttacag cagcccctac aagttcgaga
     5041 tcttcaccct cgacctgggt ctcggcggcg ctcagccctt caccctgcag gtgggcgatg
     5101 aggtccgtgc gacggtgacg ctcgacacgc cgctggtggt gccgcagagc ggtctcgatg
     5161 tcgtctggac gaagcttacc aacaccgacg gcataggcgc ccccgtcgac gccacgaccg
     5221 ggctcacagg cattggcgat ctttccggcg gaaccctggg cgccgggacg ggccccttga
     5281 gcggcgggtg cggcaactgc ctgtccaact tcatcctgga gcacaatggc ttctcgttcg
     5341 acacattctt cagcgacgtg acggtctccg cgctcgccgc cccctatgag gtcaacaac
//
LOCUS       DATAJL010000462         2585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58153,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000462 DATAJL010000000
VERSION     DATAJL010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2585
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58153"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..721)
                     /locus_tag="VHN39_08855"
     CDS             complement(<1..721)
                     /locus_tag="VHN39_08855"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEX2816491.1"
                     /translation="MAEATQTPPPSLDEVRARIDAIDADLLRLVVERSNLAHAVAAAK
                     AAAGDAGKFGLRPGREALLLKKLLAGPRNGAKPGLIVRIWRELIGDSLATQGPFNLSV
                     WGGKDPARAVEVARLRFGVAPSLRQVAKPEDAIAGARALGGVAVCALTADNAWWGRLL
                     AEPKLRVFAALPCLAAWGPLSALAVAEVEVEPTGADNTFWVTDAHQPASAIEEALSRD
                     EVAATLLVEAGGLKLYMLAGFY"
     gene            complement(846..>2585)
                     /locus_tag="VHN39_08860"
     CDS             complement(846..>2585)
                     /locus_tag="VHN39_08860"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2816492.1"
                     /translation="AKDRAPSRESLAQRTPDNIVAALSTGVMKTFADGLSPDQVRGLA
                     VYITGKPLSFAAGSSAAPQPPGARCGANPPIRAAATDWNGYGRTTGSTRFQPNTSLGV
                     GNVQRLKVKWAFSLAGGRAGQPTIIGHRMFLVTFAGDAFSLNAKTGCVYWKSAIGAPM
                     RTSPVVVHRPGDSPSGWVMYVGELGGAVRALDAMTGAELWKTVLDTNRFAGITGGPVL
                     SGDRLYVPVSSAEELAGDMADYGCCTFGGKVAAMDPRTGKVIWKTAVLDPKPTRKNAA
                     GAQLYGPAGAAIWSQPTIDQKRGQLYVTTGDSYTEVDAPTADSVVAIGLADGKIRWAT
                     QTLKDDNFLIGCGPRRRGVNCPLGTIGPDLDYGSSPILFSLPPSHGKGGGKQIVMAGQ
                     KSGLVSGFDPDTGRQLWKTQVGFGSLFGGIEWGMAADNHALYVAISDGAAPRDKARAG
                     LYALDPATGDFLWKSPAPNVACGWHANPCKNAQSAPVTAIPGVVFSGGQDGWLRAYAA
                     DTGRALWDFDSAANTYSTLNGVAAQKGGAFDHTGFVVSGGMLFAISGYNGSTGAYAGN
                     PLNVLLAFSIDGK"
BASE COUNT          383 a          881 c          942 g          379 t
ORIGIN      
        1 ggtagaagcc ggcgagcatg tagagcttga ggccgccggc ctcgaccaac agggtcgcgg
       61 ccacttcatc gcggctcaac gcctcttcga tggccgaggc gggctggtgg gcgtcggtga
      121 cccagaaggt gttgtccgcg ccggtgggtt cgacctcgac ctcggcgacc gcgagcgccg
      181 atagcgggcc ccaggcggcg aggcagggca gggctgcgaa caccctcagc ttcggctcgg
      241 ccagcaggcg gccccaccag gcgttgtcgg cggtgagcgc gcagaccgcg acgccaccca
      301 gggcgcgggc cccggcgatg gcgtcctccg gcttggcgac ctggcgcagg gacggcgcca
      361 cgccgaaacg caggcgggcc acctcgacgg cgcgggccgg gtccttgccg ccccagacgg
      421 agaggttgaa gggcccttgc gtcgccaggc tgtcgccgat cagctcgcgc cagatacgga
      481 cgatgaggcc gggcttggcg ccgttgcgcg ggccggccag gagcttcttc agcagcaggg
      541 cctcgcggcc gggcctgagg ccgaatttcc cggcgtcgcc ggcggcggcc ttggcggcgg
      601 cgacggcatg ggcaaggttc gaccgctcga cgaccaggcg cagcaggtcg gcgtcgatgg
      661 cgtcgatccg cgcacggacc tcgtccagcg aaggcggcgg tgtctgcgtg gcctcggcca
      721 tattctcccc caaaccgaag cctcgcgacc taggtcattg cgggcgagcg cgcaataggg
      781 ccgctcgccg caagaaagtt gcaggggaaa ccaagcgacc cggtgcggct tgcgccgggt
      841 cgcccctact tcccgtcgat cgagaaggcg agcaggacat tcaagggatt gccggcgtag
      901 gcgccggtcg aaccgttgta gccggagatg gcgaacagca tcccgcccga gaccacaaag
      961 ccggtgtgat cgaaggcgcc gcccttctgc gcggcgacac cgttcagcgt gctgtaggtg
     1021 ttggctgcgg aatcgaagtc ccacagggcc cgcccggtat cggccgcata ggccctgagc
     1081 cacccgtcct gcccgccgga gaagaccacc ccggggatcg ccgtcaccgg cgcggactgg
     1141 gcgttcttgc aagggttcgc atgccagccg cacgccacgt tgggcgccgg gctcttccag
     1201 aggaaatccc cggtcgccgg gtcgagggcg tagaggccgg ccctggcctt gtcccggggc
     1261 gcggcgccgt cggagatcgc cacgtagagc gcgtgattgt cggccgccat gccccattca
     1321 atcccgccga acaggctgcc gaagccgacc tgggtcttcc agagctgccg gccggtgtcg
     1381 ggatcgaagc ccgagacgag gcctgacttc tggccggcca tgacgatctg cttgccgccc
     1441 ccttttccat ggcttggggg aaggctgaag aggatcggcg atgagccata gtcgaggtcg
     1501 ggcccgatgg tcccaagcgg gcagttgacg ccgcgccggc gcggaccgca gccgatcagg
     1561 aagttgtcgt ccttcagcgt ctgcgtcgcc cagcggatct tgccgtccgc caggccgatg
     1621 gcgacgaccg agtccgcggt cggggcatcg acctcggtgt agctgtcgcc ggtcgtcaca
     1681 tagagctggc cgcgcttttg atcgatggtc ggctgcgacc agatcgccgc gcccgccgga
     1741 ccgtagagct gggcgcctgc cgcgttcttg cgggtcggct tgggatcgag cacggcggtc
     1801 ttccagatca ccttgccggt cctgggatcc atcgccgcca ccttgccgcc gaaggtgcag
     1861 cagccatagt cggccatgtc gccggccagc tcctcagccg aggacacagg gacgtagagc
     1921 cggtctccgc tgagcaccgg gccgccggtg atcccggcga accggttggt gtcgagaacg
     1981 gtcttccaga gctcagcgcc ggtcatggcg tccagggcgc gcacggcgcc gcccaactcg
     2041 ccgacgtaca tcacccagcc ggagggcgag tcgcccggcc gatggaccac caccggcgag
     2101 gtgcgcatcg gcgcgccgat ggcgctcttc cagtagacgc agccggtctt cgcattcagc
     2161 gagaaggcgt cccccgcgaa ggtcaccagg aacatccgat ggccgatgat cgtgggctgg
     2221 ccggcccggc cgccggcgag ggaaaaggcc cacttgacct tcagccgctg gacgttgccg
     2281 acccccaggc tggtgttcgg ctggaaccgc gtcgagccgg ttgtgcggcc atagccgttc
     2341 cagtccgtgg ccgccgcgcg gatcggcggg ttggcgccgc acctggctcc cggtggttgc
     2401 ggcgcggcgg aggaccccgc cgcgaacgac agcggcttgc cggtgatgta gacggccagg
     2461 ccgcggacct gatcgggcga caggccgtcg gcgaaggtct tcatcacgcc ggtggatagg
     2521 gccgcgacga tgttgtcggg cgtgcgctgg gccagggatt cgcgcgacgg ggcgcggtct
     2581 ttcgc
//
LOCUS       DATAJL010000463         2688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46800,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000463 DATAJL010000000
VERSION     DATAJL010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2688
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46800"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..883
                     /gene="serS"
                     /locus_tag="VHN39_08865"
     CDS             <1..883
                     /gene="serS"
                     /locus_tag="VHN39_08865"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEX2816493.1"
                     /translation="SKPKDHVDLGGDLGLLDFEAAVRMSGSRFVVLKGQLARLERALG
                     QFMLDFQTTEHGYTEVSPPLLVNDAAAYGTDKLPKFADDLFQTTDGRWLIPTAEVPLT
                     SLVMDQITPQEDLPLRYTALTPCFRSEAGASGRDTRGMIRQHQFYKVELVSIVEPDKS
                     DEEHERMVGCAEAILKRLELPFRTMLLCTGDMGFGARKTYDLEVWLPSEGRYREISSC
                     SNCGDFQARRMDARTKAAGEKGTRFVHTLNGSGLAVGRTLVALMENYQDEDGRIAVPQ
                     ALHPYLPGLTHIGGKAA"
     gene            880..1653
                     /gene="surE"
                     /locus_tag="VHN39_08870"
     CDS             880..1653
                     /gene="surE"
                     /locus_tag="VHN39_08870"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEX2816494.1"
                     /translation="MRILLTNDDGIHAEGLTALERIAAKLSDDVWICAPETERSGASR
                     ALTLSDPIRVRSYGPRRFSTTGTPTDCVMLGIRELVEGEAPDLVLSGVNRGVNLAEDV
                     TMSGTVAGAIEAMAMGVPGIALSQGGFYEGATGYESAEVFAPGIIRRLLEVGWPADVV
                     MNLNFPNRPIEEITEVEVTRQGFRDAHVRMVERRTDLRGREYFWVGYRQERSKPDLGT
                     DLRAFYDGKISVSPLHIDLTHGESVHKLQAVLGGTPPRF"
     gene            1671..2330
                     /locus_tag="VHN39_08875"
     CDS             1671..2330
                     /locus_tag="VHN39_08875"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEX2816495.1"
                     /translation="MAKKDDDTAETRLARLILALRSQGVSDPAVLSAIETTPRESFTP
                     DLFKARAFEDSALPIACGQTISQPFIVGLMTQALKVDKRDRVLEIGTGSGYQTTILSK
                     LSRLVYTVERYRTLMREAEARFKALGLTNIITRFGDGGEGWPEQAPFDRIMVTAAASD
                     EPRALLGQLKPNGILVAPIGKGPVQSLRRYTGDGKGGFDIEALTDVRFVPLLDGVAKE
                     L"
     gene            2457..>2688
                     /locus_tag="VHN39_08880"
     CDS             2457..>2688
                     /locus_tag="VHN39_08880"
                     /inference="COORDINATES: protein motif:HMM:NF013630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEX2816496.1"
                     /translation="MTHFLQRSALILLATTAICASPALARTHAAKPADAPKAANGKIV
                     TLKGERGAYVVKKGDTLEKIADKLDTKVSDLLS"
BASE COUNT          465 a          919 c          901 g          403 t
ORIGIN      
        1 ctccaagccc aaggaccacg tcgatctggg cggagacctc ggcctgctcg acttcgaggc
       61 ggccgttcgg atgagcggct cgcggttcgt ggtgctgaag ggccaactgg cgcggctcga
      121 gcgcgcgctc ggccagttca tgctggattt ccagaccacc gagcacggct acaccgaggt
      181 ctcgccgccg ctcctggtca acgacgcggc cgcctacggc accgacaagc tgccgaagtt
      241 cgccgacgac cttttccaga ccaccgacgg ccgctggctg atcccgaccg ccgaggtgcc
      301 gctgaccagc ttggtgatgg accagatcac gccgcaggaa gacctgccgc ttcgctacac
      361 cgcgctcacc ccctgtttcc gctcggaggc cggcgcgtcc ggccgcgaca cccgcgggat
      421 gatccggcag caccagttct acaaggtgga gttggtctcc atcgtcgagc ccgacaagtc
      481 cgacgaagag cacgagcgga tggtcggctg cgccgaggcg atcctgaagc ggctggagct
      541 gcccttccgc accatgctgc tctgcaccgg cgacatgggg ttcggggcga ggaagaccta
      601 cgacctggag gtctggctgc cgtccgaggg gcgctatcgc gagatcagtt cctgctccaa
      661 ctgcggggat ttccaggcgc gccggatgga cgcccgcacc aaggcggccg gcgagaaggg
      721 cacgcggttc gtgcacaccc tcaacggatc gggcctggcc gtgggccgca ccctggtcgc
      781 cctgatggag aactatcagg acgaagacgg ccgcatcgcc gtcccgcagg cgctgcatcc
      841 ctacctgccg ggcctcaccc acattggagg caaggccgct tgaggatcct gctcaccaac
      901 gacgacggga tccatgccga ggggctgacc gcgctggagc ggatcgcggc caagctctcc
      961 gacgacgtct ggatctgcgc gccggagacc gagcggtcgg gcgccagccg tgcgctgacg
     1021 ctgtccgacc cgatccgggt gcgcagctac ggcccgcggc ggttctccac cacgggcacg
     1081 cccaccgact gcgtgatgct gggcatccgc gagctggtgg agggcgaggc gccggatctg
     1141 gtgctttccg gggtcaaccg cggggtgaac ctggccgagg acgtgaccat gtccggcacc
     1201 gtggccggcg ccatcgaggc catggccatg ggcgtgcccg gcatcgcgct ctcccagggc
     1261 ggtttttacg aaggcgccac cggctacgag tccgccgagg ttttcgcgcc gggcatcatc
     1321 cggcggctgt tggaggtggg ctggcccgct gacgtggtca tgaacctcaa cttccccaac
     1381 cgcccgatcg aagagatcac cgaggtcgag gtgacccgcc agggcttccg cgacgcccat
     1441 gtgcggatgg tcgaaaggcg cacggacctg cgcggccgtg agtatttctg ggtcggctat
     1501 cgccaggaac gctcgaaacc cgacctcggc acggacctgc gcgccttcta tgacggcaag
     1561 atctcggtca gcccgctgca tatcgacctg actcacggcg agtcagtgca caagttgcaa
     1621 gcggtgctgg gcggaacgcc cccccggttt tgagggggcg gggcttgacg atggcgaaga
     1681 aagacgacga cacggccgag acgcggctcg cccgcctgat cctcgccctg cgctcgcagg
     1741 gcgtgagcga tcctgccgtg ctgagcgcca tcgagacgac tccgcgcgag agctttacgc
     1801 cggacctctt caaggcgcgg gccttcgagg actcggccct gccgatcgcc tgcggccaga
     1861 cgatcagcca gccgtttatc gtcggcctga tgacccaggc gctgaaggtc gacaagcgcg
     1921 accgggtgct tgagatcggc acgggcagcg gataccagac cacgatcctc tccaagctct
     1981 cgcggctggt ctacacggtg gaacgctacc gcaccctgat gcgggaggcc gaggcgcggt
     2041 tcaaggcgct cggactgacc aatatcatca cccgcttcgg cgacggcggg gagggatggc
     2101 cggagcaggc gcccttcgac cgcattatgg tcacagccgc ggcgtctgat gagcccaggg
     2161 cgctgctcgg ccagctcaag ccgaacggca tcctggtggc gccgatcggc aagggtcccg
     2221 tgcagagcct tcggcgctac actggcgacg gcaagggggg attcgacatc gaggccctga
     2281 ccgacgtgcg attcgtgccc ctgctcgacg gcgtggcgaa agaactttga cgaagacgtg
     2341 tgggacctgt ggcggtttgc aggttggcgg gacggggcgg gttaacccat catcaaccct
     2401 gacgccccga ctcattccca ccaccagacc ggcccatcca ccaaaccgga gcggcgatga
     2461 cgcacttcct acagcgatcg gccctgatac tgctggcgac cacggcgatt tgcgcgagtc
     2521 ccgcgctcgc caggacccat gccgccaagc cagctgacgc gcccaaggcc gccaacggca
     2581 agatcgtcac gctcaagggc gagcgcggcg cctacgtggt caagaagggc gacaccctcg
     2641 agaagatcgc cgacaagctc gacaccaagg tcagcgacct gctcagca
//
LOCUS       DATAJL010000464         3063 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21010,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000464 DATAJL010000000
VERSION     DATAJL010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3063
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21010"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..941
                     /locus_tag="VHN39_08885"
     CDS             <1..941
                     /locus_tag="VHN39_08885"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2816497.1"
                     /translation="WVQRNISAFGGDPKNVTVFGESAGGMSTLALLATPSAKGLYQKA
                     IVESGLGWTTPSTLADQEKIGLAALIKDGVPATATAADLRALSADRLGAVNGNYGPFI
                     DGKLMTETDSQAIARGHVPDVPLIIGSNSGEDSLMGPMTLPAAALARIPEAVKPAYTA
                     EAAAGPDIFARAVFTDRVMGGPARWVAAETSGGKPSWLYYFSYVGSRFPPSKTRASHA
                     DEIQYVWEYWGRRTPMSMVSAKDQQVATLMHACWVSFAKTGVPKCGTEAWPAYTPAGD
                     QLMEFGAESGVRTHFRKAQLDAEQASVLPTLAVGGK"
     gene            1014..1871
                     /locus_tag="VHN39_08890"
     CDS             1014..1871
                     /locus_tag="VHN39_08890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEX2816498.1"
                     /translation="MATRPTWQGYLRLSLVSCPVSLYTATSRGGEVHFNMLSKATHNR
                     IRMIPTDPETGPVERSEIVKGYEIEKGHYVVVSGEELENVRLETTRTLDIERFVDDAD
                     IDRLYWNDPYFLAPDGDIAVEAFSVIREAMKKAGKVALGRLVMHQRERLMALEAHDKG
                     IVAYTLRNRTEVREADEIFGHIKAVKPPAPMVAIAAKIIDQLEGPFDPSQFNDRYEDA
                     LRALIKEKQKGHTITAPEEPKEAEVIDLMDALRRSLGQSGGERRKVAPHEAAKKPAAH
                     RKAPAKKRA"
     gene            1923..2213
                     /locus_tag="VHN39_08895"
     CDS             1923..2213
                     /locus_tag="VHN39_08895"
                     /inference="COORDINATES: protein motif:HMM:NF018717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1330 domain-containing protein"
                     /protein_id="HEX2816499.1"
                     /translation="MTAYVVNEIVVTDADVFQTYVVQVPPTLAAFGGRYLVRSGASQA
                     IEGEPPGRLVILEFPDRAAALAWRSSPAYSAILPIRDAASTSRVYVVDGYEA"
     gene            complement(2224..>3063)
                     /locus_tag="VHN39_08900"
     CDS             complement(2224..>3063)
                     /locus_tag="VHN39_08900"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2816500.1"
                     /translation="QKAIGESSFGRLEPTSMADAQAQGLKAAATAGVSGEDAAAAAAL
                     RKLPLSAMPYSGPFTSRAGPILDGRIVQGGIAEGFAAGKQAKVPLLIGGNSNEASLFR
                     PQAAAVDAIAADKKAAAMAAFDPKASGNKAQMANDMATRVYITEPDRAISRAQSKAGQ
                     PVYTYYFSYVSPGDKARAQYGAPHTAEIKYAFAGPKQQFADVDLPLAKAVNAYWAAFI
                     KSGNPGSAGGPVWPKFSPGETYMEFSADGPAAHDHFLKAQLDWQEEAVKGGAGASPTA
                     PPK"
BASE COUNT          484 a         1084 c         1038 g          457 t
ORIGIN      
        1 aatgggtgca gcggaacatc tcagccttcg gcggcgaccc caagaacgtc accgtcttcg
       61 gcgaaagcgc cggcggcatg agcacattgg ccctgctcgc caccccctcg gccaagggcc
      121 tctaccagaa agccatcgtg gaatcgggcc tgggctggac cacaccctcg acgctcgccg
      181 atcaggagaa gatcggcctc gccgccctga tcaaggacgg cgtgccggcg accgccacgg
      241 cggcggacct gcgcgcgctt tccgccgacc ggctgggcgc ggtcaacggc aactacggcc
      301 ccttcatcga cggcaagctg atgaccgaga ccgacagcca ggccatcgcc cgcggccacg
      361 ttcccgacgt gccgctgatc atcggctcca actccggcga ggattcgctg atgggcccga
      421 tgacgctgcc ggccgcggcg ctggcgcgca tccccgaggc cgtgaagccg gcctacacgg
      481 ccgaggccgc cgcgggtccc gacatcttcg ctcgcgcggt cttcaccgac cgggtgatgg
      541 gcggcccggc ccgctgggtg gcggccgaga cctccggcgg caagccgtcg tggctctact
      601 acttttccta tgtcggctcg cgcttcccgc cgtccaagac ccgcgccagc cacgccgacg
      661 agatccaata cgtctgggaa tactggggtc gccgcacgcc catgagcatg gtcagcgcca
      721 aggatcagca ggtcgcgacc ctgatgcacg cctgctgggt cagcttcgcc aagaccggcg
      781 tccccaaatg cgggaccgaa gcctggcccg cctacacgcc cgcgggcgac cagctcatgg
      841 agttcggcgc ggagagcggg gtgcgcaccc acttccgcaa ggcccagctc gacgccgagc
      901 aggcctcggt gctgccgaca ctggcggtgg gcgggaagta ggacgggcgc ctcccccgaa
      961 ctgactccgc ccagccgcgt ttccttgagt ctcttcaagg ggatcgcacc accatggcca
     1021 cccgtccgac ctggcagggc tacctgcgcc tcagtctcgt gagctgcccg gtgtcgctct
     1081 acacggcgac ctcgcgcggc ggggaggtgc acttcaacat gctctccaag gcgacccaca
     1141 accgtatccg gatgatcccc accgatccgg aaaccgggcc ggtggagcgg tccgagatcg
     1201 tcaagggcta cgagatcgag aagggccact atgtggtggt cagcggcgag gagctggaga
     1261 acgtgcggct ggagaccacg cggacgctgg atatcgaacg cttcgtcgac gacgccgaca
     1321 tcgatcggct ctactggaac gacccctatt tcctggcgcc ggacggcgac atcgcggtcg
     1381 aggcgttcag cgtcatccgg gaggccatga agaaggccgg caaggtggcg ctgggccgcc
     1441 tcgtcatgca ccagcgcgag cggctgatgg cgctggaggc gcacgacaag ggcatcgtcg
     1501 cctacacgct tcgcaaccgg accgaggtgc gcgaggccga tgagatcttc ggtcatatca
     1561 aggccgtcaa gccgccggcc ccgatggtcg ccattgccgc caagatcatc gaccagctgg
     1621 aaggcccctt cgaccccagc cagttcaacg accgttacga ggatgcgctg cgggccctga
     1681 tcaaggaaaa gcagaaaggc cacactatca ccgcgccgga ggagcccaag gaggccgagg
     1741 tcatcgacct gatggacgcg ctgcggcgca gcctgggcca gtccggcggc gaacggcgca
     1801 aggtcgcgcc gcacgaggcc gccaagaagc ccgcggccca ccgcaaggcc ccggccaaga
     1861 aacgcgcctg acgcgcggcc tccgcgccgc taggctcgcg ctcggttcga gggagcgcgc
     1921 gcatgacggc ctatgtggtc aatgagatcg tcgtcactga cgccgacgtc ttccagacct
     1981 atgtggtcca ggtgcccccg acgctcgcag ccttcggcgg ccgctacctc gtgcgcagcg
     2041 gggcgagcca ggccatcgag ggcgagccac ccggccgcct ggtgatcctc gaattccccg
     2101 accgcgccgc cgcgctcgcc tggcgttcgt cgcccgccta cagcgccatt ctgccgatcc
     2161 gcgacgccgc ctcgacgtcg cgagtctatg tggtggacgg ctacgaagcc tgagccgcgc
     2221 gccctacttc ggcggcgccg tcggagacgc cccggcgccg cccttcacgg cctcttcctg
     2281 ccagtcgagc tgggctttca ggaagtggtc gtgggcggcc gggccgtcgg cgctgaattc
     2341 catataggtc tcgcccggcg agaacttcgg ccacacaggg ccgccggcgc tcccgggatt
     2401 gccgctcttg atgaaggccg cccaataagc gttgaccgcc ttggcgagcg gaaggtccac
     2461 gtcggcgaac tgctgcttgg gtccggcgaa ggcgtatttg atctccgcgg tgtgcggcgc
     2521 gccgtactgg gcccgcgcct tatcgcccgg gctcacgtag gagaagtagt aggtgtagac
     2581 cggctgcccg gccttggact gcgcccggct gatcgcccgg tccggctcgg tgatgtagac
     2641 gcgggtcgcc atgtcgttgg ccatctgggc cttgttgccg ctagccttcg gatcgaaggc
     2701 ggccatggcg gcggccttct tgtcggccgc gatggcgtcg acggcggcgg cctgcgggcg
     2761 gaagaggctc gcctcattgg agttgccgcc gatcagcagc ggcaccttgg cctgcttgcc
     2821 ggccgcgaag ccctcggcga tgccgccctg gacaatcctc ccatcgagga tcgggccggc
     2881 gcgggaggtg aacggccccg agtagggcat ggcgctgagc ggcagcttgc gcagcgccgc
     2941 ggccgcggcc gcgtcctcgc cgctgacccc ggccgtggcg gcggccttca agccctgggc
     3001 ctgggcgtcg gccatcgagg tgggttcaag gcgtccaaag ctcgactcgc cgatggcttt
     3061 ctg
//
LOCUS       DATAJL010000465         5294 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46850,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000465 DATAJL010000000
VERSION     DATAJL010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5294
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46850"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..1974
                     /locus_tag="VHN39_08905"
     CDS             100..1974
                     /locus_tag="VHN39_08905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HEX2816501.1"
                     /translation="MSLDRRHLLTAAAAAGLMAAAPKTKGAGHAAAAPAAPGDAALNG
                     YFDGVCEHILAVSPEGATGLGLDTGKRAALKSQLGDASMAHITEDRAWCKAGLARLAT
                     FPDAHLSPAARLNKAVVKYAFELGRDAAPFDYGENTLGSAMGESAGPYVVSQQGGAYS
                     AAPEFLDSQHQVHTRADAEAYLARVHAIARVMSQETERVRKDAGLGVIPPDFILANTI
                     GQQEGLLAIPAAQARMATALGRKVKEAGLSGDYQARAAAIVEKEVYPALAAQLATLKG
                     LQAKAGHDAGVWRLPNGEAYYRWLLREGTTTTLTAEQVHNMGLEQNKAIEARMDGLLR
                     AQGLTQGSVGERMTALGKDPKYLFPNTDAGREQLIAYLNGLIAGVRPKLSKAFNLRLK
                     APVVVKRVPIDIQDGAGQGYMNTGSLDGSRPSTYYINLKSTENWPKFSLPSLTYHETI
                     PGHTWQGAYLTETGKLPLIRILLSGFNAYVEGYALYAEQLGDEIGMYDDDWAGRLGYL
                     QAQKFRAVRLVVDTGLHAKRWSREQAVQWAMDNSGRTRASMTSEIDRYCGTPGQACGY
                     KVGHTEINKLRDRAKAGLGSKYDLRTFDDLLVKTGAVPLTVLGDVVDGYVKSGGVVNL
                     "
     gene            1977..2438
                     /locus_tag="VHN39_08910"
     CDS             1977..2438
                     /locus_tag="VHN39_08910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2816502.1"
                     /translation="MAGDLIIRKVARGDYDAWLPLWDGYNTFYGRSGPTALDPAITAV
                     TWDRFFDPAEPVHALVAERDGALVGLVHYLFHRTTTVIAPTCYLNDLFTDADARGGGI
                     GKALIEAVYARARASGSSRVYWSTHETNATAQRLYDYVAQKSGFIIYRHDV"
     gene            complement(2435..3361)
                     /locus_tag="VHN39_08915"
     CDS             complement(2435..3361)
                     /locus_tag="VHN39_08915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEX2816503.1"
                     /translation="MAGVIAIGECMAELSLTAPEAGRGGAAAIGYAGDTYNTAVYLRR
                     LGLDAAYASAVGQGDPFSAGILASLAEEGIGRGLVVEAEGRLPGLYAIQRDAAGERSF
                     FFWRSEAPARDYLKLVDLEALGAALKDAELIVVSAITLAILGEAGRAVLGGLLAQAKA
                     AGAAVAFDTNYRVRLWPGPDVGRAAIEAVLPHCRYLSLSAEDVAAFKGRSAEAMARTW
                     AARGVEVVLRHADHRIEVLSGEGAELFPAEPVADSVVDTTGAGDSFNAGYWATRLRGG
                     SPAEGVAAGRRLAAAVVQHPGAIIPRAAMPTL"
     gene            3609..4253
                     /locus_tag="VHN39_08920"
     CDS             3609..4253
                     /locus_tag="VHN39_08920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015667319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HEX2816504.1"
                     /translation="MLTWFQALLPKEQKFFDLFEAHAVTLVAGATSLRHLLNGGEAVP
                     LYCAEVARHEDEADNITREVLLAVRRTFITPFDRSDIHDLISSMDDAIDQMHKTAKAI
                     LLFEQRSFQPDMVKLGDVIVKTAALTAEAVPLLRSLRGNARRLNEIAEEVTRLEDQSD
                     ALYDAGIQALYRGPAAKDPMAYIVGAEIYDHLEKVVDRFEDVANRISAVLIEHL"
     gene            4255..5271
                     /locus_tag="VHN39_08925"
     CDS             4255..5271
                     /locus_tag="VHN39_08925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEX2816505.1"
                     /translation="MDFQGPGLLLIVLVVVALAFDFLNGLHDAANSIATIVSTRVLPA
                     RYAVVWAAFFNFIAFAIFGQHVAQTVGKGIISPDIVSDAVIFGALGGAITWNVVTWLG
                     GIPSSSSHALIGGLLGSGIAKAGLHPVVWGGVWKTVAGIVVSPALGMALALLLVLIVS
                     WVFVKARPAFADGVFRRLQFLSAAAFSLGHGGNDAQKTMGIITVLLYAHGKLSGEFHV
                     PFWVVLSCQGAMAAGTLMGGWRIVHTMGSKITHLTPQQGFCAETAGAISLFFFTNIGV
                     PVSTTHTITGAIVGVGAARRVSAVRWNIASNIVWAWVITMPVAGLLGAAFYGLARLAD
                     RVWG"
BASE COUNT          824 a         2010 c         1662 g          798 t
ORIGIN      
        1 atcgattccg aagttcgtcc ggcgccggcc gcaaacggtt gcgaacttcg gaatcgggac
       61 actacggtcg cgcttcgccg tttcgccagg gacccgttca tgagcctcga ccgccgtcat
      121 ctgctcaccg ccgccgccgc cgcgggcctc atggccgcag cgccgaaaac caagggcgcg
      181 ggccatgccg ccgccgcgcc ggccgcaccc ggcgacgccg cgctcaacgg ctacttcgac
      241 ggcgtctgcg agcacatcct ggccgtctca ccggaaggcg ccaccggcct gggcctcgac
      301 accggcaagc gcgcggcgct caagtcccag ctcggcgacg cctccatggc ccacatcacc
      361 gaggatcgcg cctggtgcaa ggcgggcctc gccaggctcg cgaccttccc agacgcccac
      421 ctctcgcccg ccgcccgcct caacaaggcc gtcgtcaaat acgccttcga gctcggccgc
      481 gacgccgctc cgttcgacta cggcgaaaac accctgggct cggccatggg cgagagcgcc
      541 ggcccctatg tggtcagcca gcagggcggc gcctattccg cggcgcctga gttcctcgac
      601 agccagcacc aggtccacac cagggccgac gccgaggcct atctggcccg cgtccacgcc
      661 atcgcccggg tgatgagcca ggagaccgag cgggtccgca aggacgccgg cctcggcgtc
      721 atccccccgg acttcatcct ggccaacacc atcggccagc aggagggctt gctggccatc
      781 cccgcggccc aggcccgcat ggccaccgcc cttggccgca aggtcaagga ggcgggtctc
      841 tccggcgact accaagcccg cgccgccgcc atcgtcgaaa aggaggtcta tccggcgctc
      901 gccgcccagc tcgccacgct caagggcctg caggccaagg ccggccacga cgccggcgtc
      961 tggcgcctgc cgaacggcga ggcctactat cgctggctgc tgcgcgaggg caccaccacc
     1021 accctcaccg ccgagcaggt ccacaacatg ggcctggagc agaacaaggc catcgaggcc
     1081 cgcatggacg gcctgctccg cgcgcagggc ctcacccagg gttcggtggg cgagcggatg
     1141 accgcgctcg gcaaggatcc gaagtacctg ttccccaaca ccgacgccgg gcgcgagcag
     1201 ctgatcgcct atctgaacgg cctgatcgcc ggcgtccgtc cgaagctctc caaggctttc
     1261 aacctcaggc tcaaagctcc ggtcgtggtc aagcgcgtgc ccatcgacat tcaggacggc
     1321 gccggccagg gctatatgaa caccggctcg ctcgacggct cgcggccctc gacctactac
     1381 atcaacctga aatcgaccga gaactggccg aaattctcgc tgcccagcct cacctatcac
     1441 gagacgattc cgggccacac ctggcagggc gcctacctca ccgagaccgg caagctgccg
     1501 ctgatccgca tcctgctgtc gggcttcaac gcctacgtgg aaggctacgc cctctacgcc
     1561 gaacagctcg gcgacgagat cggcatgtac gacgacgact gggccgggcg cctcggctac
     1621 ctgcaggccc agaagttccg cgccgtgcgg ctcgttgtgg acactggcct gcacgccaag
     1681 cgctggagcc gcgaacaggc cgtccagtgg gccatggaca attccggccg cacgcgcgcc
     1741 tccatgacca gcgagatcga ccgctattgc ggaacgcccg gccaggcctg cggctacaag
     1801 gtcggccaca ccgagatcaa caagctgcgc gaccgcgcca aggccggcct cgggtcgaaa
     1861 tacgacctca ggaccttcga cgacctgctg gtcaagaccg gcgccgtgcc gctcaccgtg
     1921 ctcggcgacg tggtcgacgg ctacgtcaaa tccggcggcg tggtgaacct ctagggatgg
     1981 ccggcgacct gatcattcgc aaggtcgcgc gcggcgacta cgacgcctgg ctgccgctct
     2041 gggatggcta caacaccttc tacggccgct ccggaccgac agcgctggac cctgcgatca
     2101 ccgccgtcac ctgggaccgg ttcttcgatc ccgccgagcc ggtccacgcc ctggtggccg
     2161 agcgcgatgg cgcgctggtg ggcctcgtcc actacctctt ccaccgcacg accacggtga
     2221 tagcgcccac ctgctacctc aacgacctct tcaccgacgc cgacgcccgc ggcggcggca
     2281 tcggcaaggc gctgatcgag gccgtctacg cccgcgcccg cgcgtccggt tccagccgcg
     2341 tctactggtc cacccacgag accaacgcca cggcccagcg gctctatgac tacgtggcgc
     2401 agaagtcggg tttcatcatc taccggcacg acgtctagag ggttggcatc gccgccctgg
     2461 ggatgatcgc gccggggtgc tgcaccaccg ccgcggccag ccgacgcccg gcggccacgc
     2521 cttcggctgg cgaaccgccg cgcaggcgcg tggcccagta gccggcgttg aagctgtcgc
     2581 cggcgccggt ggtgtcgacc acagaatcgg ccaccggttc ggctgggaac agctccgcgc
     2641 cctccccgct cagcacctcg atccgatggt cggcgtggcg cagcaccacc tcgacgcccc
     2701 gcgccgccca ggtcctggcc atggcttccg ccgagcgccc cttgaaggcc gccacgtcct
     2761 cggcgctcag cgacaggtag cggcaatgcg gcagcaccgc ctcgatcgcc gcacggccca
     2821 cgtctggccc cggccacagc cgcacccggt agttggtgtc gaacgccacc gccgcgccgg
     2881 ccgccttggc ttgcgccagc aggcccccaa gcactgcacg ccccgcctcg ccgaggatcg
     2941 ccagcgtgat cgccgagacg acgatcagct cagcatcctt gagcgccgcg cccagcgcct
     3001 ccaggtcgac cagcttcaga tagtcccgcg ccggcgcctc gctgcgccag aagaagaagc
     3061 tgcgctcgcc cgccgcgtcc cgctggatgg cgtagaggcc cggcagtcgc ccctcagcct
     3121 cgaccaccag cccgcgcccg atcccctcct cggcgaggct cgccaatatg cccgcgctga
     3181 agggatcgcc ctggccgacc gcgctggcat aggctgcgtc cagccccagc cggcgcagat
     3241 agacggcggt gttgtaggtg tcgcccgcgt agccgatcgc cgccgcgccc cctctgccgg
     3301 cttcaggcgc cgtcaggctg agctccgcca tgcactcgcc aatcgcgatc actccggcca
     3361 tctgagcccc ttcagcagct gcggagcgac tttgccgagg ctcggcccgc aacacaacgc
     3421 gcggcgggcg cgccgggccg ccatttcatg accattccgc cttgcaatga tccgaacacc
     3481 gatcattctg ggcgccccgt tcgatccccg agaattgccg ttcgggcttg gttccagggg
     3541 cgtccggccg ccgactcggc tacggacggt ggcgggcggc tcgtgaaccc gcgcccgaag
     3601 gatcgcacat gctgacctgg ttccaggcgc tgctgcccaa ggagcagaag ttcttcgacc
     3661 tcttcgaggc ccatgccgtg accctggtgg ccggcgccac gtcgctgcgc cacctgctga
     3721 acggcggcga ggccgtgccg ctctactgcg ccgaggtcgc ccgccacgag gacgaggccg
     3781 acaatatcac ccgcgaggtg ctgctggcgg tgcgccgcac cttcatcacc cccttcgacc
     3841 gcagcgacat ccacgacctg atttcctcga tggatgacgc catcgaccag atgcacaaga
     3901 ccgccaaggc gatcctgctg ttcgagcagc gcagcttcca gccggacatg gtcaagctgg
     3961 gcgacgtgat cgtaaagacc gcggccttga ccgccgaggc ggtgcccctg ctgcggtcgc
     4021 tgcgcggcaa cgcccggcgg ctgaacgaga tcgccgagga ggtcacccgg ctggaggacc
     4081 agtccgacgc cctctacgac gccggcatcc aggccctcta ccggggaccg gcggccaagg
     4141 accccatggc ctatatcgtg ggcgccgaaa tctacgatca cctggaaaaa gtcgtcgacc
     4201 gtttcgagga cgtggccaac cggatcagcg ccgtcctgat cgagcatctc taagatggat
     4261 ttccagggcc ccggtctcct gctgatcgtg ctggtcgtcg tggcgctcgc cttcgacttc
     4321 ctgaacggcc tgcacgacgc ggccaattcc atcgccacca tcgtctcgac ccgggtgctg
     4381 ccggcccgct acgcggtcgt ctgggcggcg ttcttcaact tcatcgcctt cgcgatcttc
     4441 ggccagcacg tggcccagac cgtgggcaag gggatcatct cgcccgacat cgtctccgac
     4501 gcggtgatct tcggcgcgct gggcggcgcc atcacctgga acgtggtcac ctggctgggc
     4561 ggcatcccgt cctcctcctc ccacgccctg atcggcggac tgctgggctc cgggatagcc
     4621 aaggcggggc tccatccggt ggtctggggc ggagtctgga agacggtggc cggcatcgtc
     4681 gtctcgcctg cgcttggcat ggcgctggcg ctgctgctcg tgctgatcgt ctcgtgggtc
     4741 ttcgtgaagg cccggcccgc cttcgccgac ggggtcttcc ggcggctgca gttcctgtcg
     4801 gccgccgcct tttccctcgg ccacggcggc aacgacgccc agaagaccat gggcatcatc
     4861 accgtcctgc tctacgccca cggcaagctc tcgggcgagt tccacgtacc cttctgggtc
     4921 gtgctgtcct gccagggggc catggcggca ggcaccttga tgggcggctg gcggatcgtt
     4981 cacaccatgg gctcgaagat cacccacctc accccgcaac agggcttctg cgccgagacc
     5041 gcgggggcca tctcgctgtt cttcttcacc aacatcggcg tgccggtctc caccacccac
     5101 accatcaccg gcgccatcgt tggcgtgggc gcggcccggc gcgtgtcggc ggtgcgctgg
     5161 aacatcgcca gcaacatcgt ctgggcctgg gtgatcacca tgccggtggc gggcctgctg
     5221 ggcgcggcgt tttacgggct ggcgcgcctg gccgatcggg tctggggcta ggcatgccca
     5281 agagccaccc cgag
//
LOCUS       DATAJL010000466        15966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93708,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000466 DATAJL010000000
VERSION     DATAJL010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 15966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15966
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93708"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..742
                     /locus_tag="VHN39_08930"
     CDS             107..742
                     /locus_tag="VHN39_08930"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816506.1"
                     /translation="MSLRLTLAAGAAAIATLAAAAGAQAATLYSLPGATPEMATETSV
                     PATFLSAGGAGNLSFVIDGYASLDGQNFYEDDFTLSLNGAPIVSATFNLGGGGPDVVY
                     FAPGGATFDNVSGNLTNVTWAGGQVFVDTPLALTAGSNTLTFAYHSLTDGHAGFQGTG
                     DEGWGLENIQVSGAAGGVPEPAAWGLMLVGFGGMGALLRRQRRLQPAFARI"
     gene            924..1532
                     /locus_tag="VHN39_08935"
     CDS             924..1532
                     /locus_tag="VHN39_08935"
                     /inference="COORDINATES: protein motif:HMM:NF019311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816507.1"
                     /translation="MNRTLLTSCAVMALTLAAAARADADPLSFSGPISVTYYSTFLED
                     PGVGISFADPFGGDTMASVDELRDIGGTDSAPNWPDGSIEFGADFTGSLTAASAGTYD
                     VAFGTDDAGYLFIDGVQVAAQPGLHGIGVTDYSAVLAAGSHSFEIQYDNGGGGGAVAQ
                     FIPGDLIGAGVPEPASWTLMLLGFGGLGVILRRRRQPIAVAA"
     gene            complement(1529..2473)
                     /locus_tag="VHN39_08940"
     CDS             complement(1529..2473)
                     /locus_tag="VHN39_08940"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008262802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016717 - oxidoreductase activity, acting
                     on paired donors, with oxidation of a pair of donors
                     resulting in the reduction of molecular oxygen to two
                     molecules of water [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase family protein"
                     /protein_id="HEX2816508.1"
                     /translation="MAVAARIDPKAYFAPQEWAPLSRRSRWKGLALLAHAWIVIGLAM
                     ALAVAAPGWWKLAAIPLAIAIIGARQLGLAILMHDAAHVALHPDPKVNDWVGNHLTTG
                     GLLGYRKYHLTHHKYAQQGEDPDLVLSAPFPITRLSLRRKIVRDLTGQTYYKLRWSGL
                     ATRIAERKPGEPLLPILGEAIVARRRFLIGMVLTIGVTAPFGLWWVWPVLWLVPQATW
                     LPMVTRLRNIAEHACVPKNEPDPLRHARTTMANWLERAFIAPYYVNYHCEHHMFMHVP
                     CYNLPRAHSLLVRKGVWDDMLTAPGYLSMLKVATAKAA"
     gene            complement(2556..3575)
                     /locus_tag="VHN39_08945"
     CDS             complement(2556..3575)
                     /locus_tag="VHN39_08945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEX2816509.1"
                     /translation="MAATAPLPDAMPTNWVDRFAPASLRPWLKLGRFDRPTPVWLLIL
                     PGWQGIVLADAMEHRLPNVGLMGLMAVGGVLMRAAGCAYNDIVDRDIDAKVARTAMRP
                     IPAGQISVRQAWAFVVFCCAASFGILITLPPTAVLLGALSLVLVAAYPFMKRITWWPQ
                     AWLGLTFNWGALLGFAAATGAGPGFWRGMAPYVVSSGNLHFLMRAMADSALQWPAVLL
                     YAAGVFWTLGYDTIYAIQDLEDDALAGVKSSARRLGPYAPLGILGFYLTSLALLLATG
                     AMAGLGPFFYLSLIAYGVQLCSQARKVRTDDPVKALRLFRSNSWAGLILVLALLAGAR
                     FVPLY"
     gene            3988..5775
                     /locus_tag="VHN39_08950"
     CDS             3988..5775
                     /locus_tag="VHN39_08950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2816510.1"
                     /translation="MTDHYEDTEDQKERVLKNSQVLAFIAGFWMRRPWLLTGTIVFVV
                     LAIAFDLATPWAAGKLVDAVAGGPGRLATAWRAWAMFVGVYFGFSMIRNISIRFWIPL
                     ASANMKEMTDEGFRKVQSFSADWHADTFAGATVRRLSRAMWGYDAVSDAALVFLGPAI
                     LVLIGLCGMMAWRWPVVGAFATVMVTLFIVSNIVLTNVYARPLNLRSVALDSRIGGAL
                     SDSIASNPTVKSFGAEAREEARIAQVTDLWRRAANKTWSRFTDIWLLHNVMLVVMQAG
                     LTGLLIQLWAKGQATPGDVAFVITAFMLMTGYLRNIGDNIRMTQKGMDDAEDVARYAT
                     MAPQVIDVANAKAFHADLGEIVFDRVVFRYKSAQTPLYDNFTLRIAPGERVALVGPTG
                     AGKSTFVKLIQRLYDVDGGQILVDGQDIARVSQGSLRRAVAVVPQDPSLFHRTLSENI
                     AYARPDATQDEVELAARRARAHDFICKLPQGYGTLVGERGVKLSGGERQRVAIARAFL
                     ADAPILVLDEATSSLDVETERQVQAAMEELMVGRTTIVIAHRLSTIRGADRILVFEDG
                     RIVEEGKHAELVKKGGAYARLHAVTEGWV"
     gene            5884..6699
                     /locus_tag="VHN39_08955"
     CDS             5884..6699
                     /locus_tag="VHN39_08955"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEX2816511.1"
                     /translation="MSDVVASLRTGSEKTYGTIAIVLGALIWVLFGLGLWAAVKTANS
                     QVLGVLSLYIVYGVLIWFGYLIAGAIYRATAFGNMILLSPNQFPQLYEMVETGAKELG
                     LSPTPATFLYNSNGLFNAFARRLMGGRYVFLTSALVEANDDEQVRFVIGHELGHHAAG
                     HLNPWLNFLKMPAYFVPFLMPAYSRSREYSCDNIGAYLSKDPVASRSALQMLGCGCRR
                     LNGAMSCEAFVAQEAMVPPVAGFVAEIFRSHPRLTRRVAAIRDGVRTRSARGS"
     gene            complement(6696..7901)
                     /locus_tag="VHN39_08960"
     CDS             complement(6696..7901)
                     /locus_tag="VHN39_08960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2816512.1"
                     /translation="MAKDKLTAGEARRIALAAQGFATPRPDGPVAKRQLLKLIDRLGV
                     IQIDSVNVISRTHYLPAFSRLGAYPREMLEEVAWAKKRPLFEYWAHEASLLPLSSQPL
                     FRWRMQDAHDGAGVWKGVARFLRERRDFVDKVLKEIATRGPLAASDLEMGQKGEGGWW
                     GWSDAKRAVECLFWTGELTTATRRGTFERVYGLPEKVLPRAIVEAPTPTREDAHRELY
                     RRAIRAMGVATSKDLRDYFRMPVEGAKARMAELVEEGSLVPVTVKGWREPAYLDPAAR
                     WPRRVDASALLSPFDNLIWFRERTERMFAVRYRIEIYTPAHKRTHGYYVLPFLEGDAL
                     TARVDLKADRKAGVLIVQASHAEPWATAATPVRLAAELRLMAGWLGLERVRVEKKGDL
                     APALGEAVG"
     gene            complement(8218..8979)
                     /gene="ppk2"
                     /locus_tag="VHN39_08965"
     CDS             complement(8218..8979)
                     /gene="ppk2"
                     /locus_tag="VHN39_08965"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEX2816513.1"
                     /translation="MAKDDDYDHELEALQAALVHFQQAAIKSGEKSLVIFEGRDAAGK
                     DGAIKRITEHLSVRNTRAIALPKPTEREHSQWYFQRYVRHLPAAGEFVLFNRSWYNRA
                     GVEPVMGFCTPEEHEAFLRDVSGFETMLVGSGLKVIKLWLDISREEQAVRLKARKSDP
                     LKALKVSSLDAVAQDKWDAYTQARDEMLTRTHTVEAPWIIVRTDHKKKARLNTMRYLL
                     KVLAPKTIAKGVDKPDPKVVFEFEVTALTDGRLER"
     gene            9027..9749
                     /locus_tag="VHN39_08970"
     CDS             9027..9749
                     /locus_tag="VHN39_08970"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEX2816514.1"
                     /translation="MIRLFIPHDLAAGAELALDHPQSHYLAAVMRQAVGDEVMLFNGR
                     DGEWRSAITAVTKRAVAVRAVALERPQAAGPDLDLVMALVKRGRLETIVEKAAELGAR
                     RVRLVQTERTNADRARVERLTAIATEAAEQTGRLDVPQVAEPVKLVKLIEGWDTGRRL
                     LFCDEAGDARPILEALKGRPAGPWAILIGPEGGFSPAERAMLRALPYAVPASLGPRIL
                     RADTAAIGALTLWQAALGDWTP"
     gene            9844..11214
                     /locus_tag="VHN39_08975"
     CDS             9844..11214
                     /locus_tag="VHN39_08975"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004357 - glutamate-cysteine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HEX2816515.1"
                     /translation="MAEIAADDRPLTFEDLVAWFDKGSKPKADWRVGAEHEKFVFRLG
                     SHEPVPYDPAAPEQGGIKALLDGLTRFGWAPVMEAGHVIALERGKANVSLEPGGQFEL
                     SGAPLETIHDICEETGQHLQEVKVVADELGIGFLGLGFTPVWRRDQIPVMPKGRYKIM
                     REYMPKVGGLGLDMMFRTCTVQANLDFGSEADMVAKFRTSLALQPICTALFANSPFIE
                     GKPSGFVSARANVWTDVDPDRTGMLDFVFRDGFGFETYANYALNVPMYFAKRGDRYID
                     LAGRSFRDFMDGKLAELPGERPSIKDWADHTTTIFPEVRLKQYLEMRGADSGPWSALC
                     ALPALWMGIFYDSAALAAAWDLCKHWKIEDHERLRADVARLGLKAEIAGRSVQDVAKD
                     MLAIAREGLKRRNRLSGGMVDETNYLAQLDEIADSGITQAERLLELYNGPWAGDASKV
                     FESFAY"
     gene            complement(11218..11775)
                     /locus_tag="VHN39_08980"
     CDS             complement(11218..11775)
                     /locus_tag="VHN39_08980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF427 domain-containing protein"
                     /protein_id="HEX2816516.1"
                     /translation="MARAFWSFEGEPMKTPGPDHPITIEPTAGRWRAKFAGHVIADSA
                     DALILREANYPPRVYFPRADVSMDYLSRTEAATHCPYKGDAAYFTVLMDGQFAESAVW
                     TYEEPYPAMAQIAGRLSFYPDRVEVYQVDAATVNPHPAEPPGRVVAGEEDFAITVDDV
                     VQHTDSGSGASQKDHWAANVSEPDA"
     gene            11914..13728
                     /locus_tag="VHN39_08985"
     CDS             11914..13728
                     /locus_tag="VHN39_08985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015333 - peptide:proton symporter
                     activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide:H+ symporter"
                     /protein_id="HEX2816517.1"
                     /translation="MDIVIVAGLVVAAVTAVPVILQLRQHPRGLTILFFAEMWERFSY
                     YGMRGLLIFYLTQHFLFDDTTAAGSYGAYTSLVYLLPVIGGFLADRFLGARKAVAFGA
                     LLLVAGHFTMALEGAPATQVLTTHGVAYNFQITGRADGRDVKLLVGGAPYAYSAAADG
                     GLDIKGLPAAAPLPAHLAKGDYQISVAHQDPLFKNILFLALALIIMGVGFLKANISAI
                     VGQLYTQGDPRRDPGFTLYYYGINLGSFLAAIFCGWLGQNIGWWAGFGAAGVGMAFGW
                     LVFVLGKPLLEGKGEPVDPVALAKPIIGPINTEWLIYLSGFAGVAAIWVVVQSFAIVS
                     ALLGVGALCVLGYLAWYMATKADKVERERLILAIVLILASVVFWALYEQGGSSLNLFA
                     ERNVNLHLYAGQSMKPAQAQSFQSGWILVLAPVMAALWTWLGRFGRDPNPVAKFGFGL
                     LLIGASYYVLILGGTFAGPDFKSPLIFLAGAYLMQTTGEMCVSPVGLSQMTKLAPPLL
                     ISTLMATWFLGTAGAQFVAAKIAQLTASDTIGGQVLDAGKALATYSHVFGMIGLWGLG
                     AGALMIVLSPWLKKLAHGASDTHAQPRPDAEVAAEAKA"
     gene            complement(13888..>15966)
                     /locus_tag="VHN39_08990"
     CDS             complement(13888..>15966)
                     /locus_tag="VHN39_08990"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2816518.1"
                     /translation="AWVSGPGVGESWGSMLLVVLAQAAAAVVAPAPGAVPQAAPAAAA
                     ATPQEGVTTYGPDFFAGYRPANAAEMVGRLPGFTLDTGDAVRGYEGAAGNVLVDGQRP
                     ATKTDTLDQLLYRIPASSVDHIDVIRGGAPGIDMQGKTVIANVVRKAGGGFHGLLAYA
                     DSRLLEGRNYWAARAEGSGTIGDRSLDGGLFAGNGQDGGLGRGSLTSVDATGKPLEIG
                     HIHAQGEATQVIANGALEQPLWGGRVRVNARVFSQAYDDDETDFIHLPDTHSETDHQD
                     DNVFQTEFGGRYTHGLGARLSLETVLLRQDKHERYADRFIAPGDAELFHQDTTTAESI
                     ARAALKFEQKPALSWEGGAEVAYNTLDNLIRFTQNGAPIVLPASDVTVQEKRFELFGK
                     AVWRLSPKFTVEGGLREEGSNISSSGDVNLAKTLYFTKPRVLLTWSPDADTQVRVRFE
                     RAVGQLDFGAFVASTALTSGTVTAGNPNLVPEQDWVSEAAVERTFWTKGSLVVTLRHS
                     QITDAVDTAMFHGFEAPGNIDAGSKDEEIVSLTLPLDKLGLKGAQFQALSTWRQSEVT
                     DPTTHRPREITALHPNDWELHFTQDLPEHRLNWGIDVFGQQRERYFRSTEVDTYKYGT
                     FVSPFIEWKPKADLAVRVEVDNATHRPLKREFDHYAGTRDVSPLTSTLVRNEYPSQVF
                     YVRIRKMFGT"
BASE COUNT         2470 a         5462 c         5374 g         2660 t
ORIGIN      
        1 cgaatttacg atcgtaatct aagatgtcaa ccggccgttc cggcgcggcg cttgcagcgc
       61 ggggagggat acgcgccgcc ctggctcgtt ttgacacggg atgaccatga gccttcgact
      121 gaccctggcg gccggagccg ccgcgatcgc caccctggcc gccgccgcgg gcgcgcaggc
      181 cgccacgctc tacagcctcc ccggcgccac gccggagatg gccaccgaga cctcggtccc
      241 ggccaccttc ctgtcggccg gcggcgcggg caatctgtcc ttcgtcatcg acggctacgc
      301 cagcctggat ggtcagaact tctacgaaga cgacttcacc ctcagcctga acggcgcccc
      361 gatcgtcagc gccaccttca acctgggcgg cggcggcccc gacgtcgtct acttcgcccc
      421 gggtggcgcg accttcgaca acgtctcagg caacctgaca aacgtcacct gggcgggtgg
      481 tcaggtgttt gtggacaccc ccctggccct gaccgcgggt tccaacaccc tgaccttcgc
      541 ctaccacagc ctgaccgacg gccatgccgg cttccagggc acgggcgacg agggctgggg
      601 cctggagaac atccaggtca gcggcgcggc cggcggcgtg ccggaaccgg ctgcgtgggg
      661 tctgatgctg gtgggcttcg gcggcatggg cgccctgttg cgccgccagc gccgcctgca
      721 gccggcgttc gcgcgcatct gagccgccgc atcggcggtc gaattcaggg gcccggctca
      781 tggtgagccg ggcctttttc gtgtcagaac ggcgcgccgc gggcacgcga gcgagcgacg
      841 ccggcctagt ccatatggac gacttggccg cagaacgatt gtgccacgtt ggggctccaa
      901 gtcctgatgc gtgaggaagt cctgtgaacc gcacccttct gaccagttgc gccgtgatgg
      961 cgctgacgct cgccgcagcg gcgcgggccg acgctgatcc cttgagcttc tcgggcccga
     1021 tctcggtgac ctattattcg accttcctgg aagaccccgg cgtcggcatc tccttcgccg
     1081 acccgttcgg cggcgacacc atggccagcg tcgacgagct gcgggacatc ggcgggaccg
     1141 attcggcgcc caactggccg gacggctcca tcgagttcgg cgcggatttc accggatcgc
     1201 tgacggccgc gagcgcgggg acctatgacg tcgcgttcgg cacggacgac gccggctacc
     1261 tgttcatcga cggcgttcag gtcgccgccc agccgggcct gcacgggatc ggtgtcaccg
     1321 actattccgc cgtccttgcc gccggctccc acagcttcga aatccagtat gacaatggcg
     1381 gcgggggcgg cgcggtggcc cagttcatac ccggcgacct gatcggcgcc ggagtgccgg
     1441 agcccgcgag ttggacattg atgctgctgg gcttcggcgg gctcggcgtg atcctgcgcc
     1501 gtcggcgcca gcccattgcg gtcgccgctt aggccgcctt cgcggtcgcg accttgagca
     1561 tgctgaggta gcccggggcg gtcagcatgt cgtcccaaac ccccttgcgc acaagcaggc
     1621 tatgggcgcg gggcaggttg tagcagggca catgcatgaa catgtgatgc tcgcagtgat
     1681 agttcacata gtagggcgcg atgaacgccc gctcgagcca gttggccatg gtggtgcgcg
     1741 catggcgtag cgggtcgggc tcgttcttgg gcacgcaggc gtgctcggcg atgttgcgca
     1801 ggcgggtgac catcggcagc caggtcgcct gcgggaccag ccacagcacc ggccacaccc
     1861 accacagtcc gaacggcgcg gtgacgccga tcgtcagaac catgccgatc aggaaccggc
     1921 gccgcgcgac gatcgcctcg cccaggatcg gcagaagtgg ctcgcccggc ttgcgctcgg
     1981 cgatgcgcgt cgccaacccc gaccagcgca gcttgtaata ggtctgtccg gtcagatcgc
     2041 ggacgatctt gcggcgcagc gacaggcgcg tgatcgggaa cggcgccgac agcaccaggt
     2101 ccgggtcctc gccctgctgg gcgtatttgt ggtgcgtcag gtggtacttt cgatacccta
     2161 ggaggccgcc ggtggtcagg tgattgccca cccagtcgtt gaccttcgga tcgggatgca
     2221 gcgccacgtg cgcggcgtca tgcatcagga tcgccaggcc cagctgccgc gcgccgatga
     2281 tcgcgatggc cagcgggatc gcggcgagct tccaccaacc gggcgcggcg accgccaggg
     2341 ccatggccag gccgatcacg atccaggcgt gggccagcag cgcgagtccc ttccagcgcg
     2401 agcggcgcga caggggcgcc cattcctggg gcgcgaaata ggctttcgga tcgatgcgcg
     2461 cggcgacggc catgggggga ttgtaacgcc ggaaggttca ggacaacaga atgacggtgc
     2521 ggaaggcggc cgatccgccc ccgcaggggg agcattcaat agagcggcac gaaccgcgcg
     2581 ccggcgagca gagccaggac caggatcagg ccggcccagc tgttggacct gaaaagcctg
     2641 agcgccttga ccggatcgtc ggtgcgcacc ttccgggcct gggagcagag ctggacgccg
     2701 taggcgatca gcgacaggta gaagaaggga cccagacccg ccatcgctcc ggtcgccaac
     2761 aggagcgcga ggctggtcag atagaagccc agaatgccca ggggcgcata cggccccagt
     2821 cttcgcgccg aggacttcac cccggccagg gcgtcgtcct ccaggtcctg gatcgcatag
     2881 atggtgtcgt agcccagcgt ccagaacaca cccgccgcat agagcagaac cgccggccac
     2941 tgcagggcgc tgtcggccat ggcgcgcatc aggaagtgga ggttgccgga actgaccaca
     3001 tagggcgcca ttccgcgcca gaaccctggc cccgcgccgg tcgccgccgc aaagcccagc
     3061 agcgcgcccc agttgaaggt cagccccagc caggcctgcg gccaccaggt gatccgcttc
     3121 atgaacggat aggccgccac cagaacgagc gacagcgccc cgagcagcac cgccgtcggc
     3181 ggcagggtga tcaagatgcc gaaggaggcc gcgcaacaga agacgacgaa ggcccaggcc
     3241 tgccgcacgc tgatctgccc ggcgggaatt ggccgcatgg ccgtacgcgc caccttggcg
     3301 tcgatgtcgc ggtcgacgat gtcgttgtag gcgcagcccg ccgcgcgcat cagcaccccg
     3361 cccaccgcca tcaggcccat caggcccacg ttcggcaacc ggtgctccat ggcgtcggcc
     3421 agcacgatcc cttgccagcc cggcagtatc agcagccaga ccggggtcgg ccggtcgaac
     3481 cgcccgagct tcagccaggg gcgcaggctc gccggcgcga accggtccac ccagttggtg
     3541 ggcatggcgt cggggagggg tgcagtcgcg gccatgcccc ttcctagagc gcgcgcgcgg
     3601 cggctgccac tgtgacctct tggccaccct gacgacaaag ccgaacgtgg ttccgccatc
     3661 gccttgacgc tcggaatcgg cgcgcctagc ttcgccagcc tcagcaaccc gaaaggaggg
     3721 tcagaatgac gttcatcgtt ccagccgctc ccccagggtt cgccgggccg ccgccgcgct
     3781 tctaactcaa ccggaacgct tcgtctgagg gcttgttcgg ctcgctttgc gaagcctttc
     3841 cgcgcgcccg gggtccgccg gggtttttga gaaacccccg cctcaccaga taccattccc
     3901 tcgcgccgat gcgcgccgcc gtcccgcccc gttgttcaag agggggacat tcgcggtccg
     3961 ccccggcgcc gacattcgag ttttccgatg accgaccact acgaggatac cgaagaccag
     4021 aaggagcgcg tgctgaagaa cagtcaggtg ctggccttca tcgcggggtt ctggatgcgc
     4081 cggccctggc tcctgaccgg cacgatcgtc ttcgtcgtgc tggccatcgc cttcgatctg
     4141 gcgacgccct gggcggcggg caagctggtg gacgcggtgg ccggcggccc cggccgcctg
     4201 gccacggcct ggcgggcctg ggcgatgttc gtgggcgtct atttcggctt ctcgatgatc
     4261 cgcaacatct cgatccggtt ctggatcccg ctggcctcgg ccaacatgaa ggagatgacc
     4321 gacgagggtt tccggaaggt ccagtcgttc tccgccgact ggcacgccga caccttcgcg
     4381 ggcgccacgg tccgccgcct cagccgcgcc atgtggggct atgacgccgt ctccgacgcg
     4441 gcgctggtct tcctgggacc ggcgatcctg gtgctgatcg gcctgtgcgg catgatggcc
     4501 tggcgctggc cggtggtagg tgccttcgcc accgtcatgg tgacgctgtt catcgtctcc
     4561 aacatcgtgc tcaccaacgt ctacgccagg ccgctgaacc tgcggtcggt ggcgctcgac
     4621 agccgcatcg gcggcgcgct ctccgattcc atcgcctcca accccacggt gaagagcttc
     4681 ggcgccgagg cgcgcgagga ggcccgcatc gcccaggtca ccgacctgtg gcgccgcgcg
     4741 gccaacaaga cctggagccg gttcaccgac atctggctcc tgcacaacgt catgctagtg
     4801 gtcatgcagg caggcctgac agggctcctg atccagctgt gggccaaggg tcaggcgacg
     4861 cccggcgacg tggccttcgt catcaccgcc ttcatgctga tgaccggcta cctcaggaac
     4921 atcggcgaca acatccgcat gacccagaag gggatggacg acgccgagga cgtggcgcgc
     4981 tacgcgacca tggccccgca agtgatcgac gtcgccaacg ccaaggcctt ccacgccgac
     5041 ctcggcgaga tcgtcttcga ccgggtggtg ttccgctaca agtccgccca gacgccgctc
     5101 tatgacaact tcaccctgcg catcgcgccc ggggagcgcg tggcgctggt cgggcccacg
     5161 ggcgccggca agtcgacctt cgtgaagctg atccagcgcc tctacgacgt cgatggcggc
     5221 cagatcctgg tggacgggca ggatatcgcg cgcgtcagcc agggctcgct ccgccgcgcc
     5281 gtcgccgtgg tgccgcagga cccgtcgctg ttccaccgga cgctgtccga gaacatcgcc
     5341 tacgcccgcc ccgacgccac ccaggacgag gtcgagctcg ccgccaggcg ggcgcgggcc
     5401 cacgacttca tctgcaaact gccgcagggc tatggcaccc tggtcggcga acggggcgtg
     5461 aagctctcgg gcggcgaacg ccagcgcgtg gccatcgcgc gggccttcct ggccgacgcg
     5521 ccgatcctgg tgcttgacga ggcgacctcg tcgctggacg tggagaccga gcgtcaggtg
     5581 caggcggcca tggaggagct gatggtcggc cgcaccacca tcgtcatcgc ccaccgcctg
     5641 tcgaccatcc gcggcgccga ccgcatcctg gtcttcgagg acggccgcat cgtcgaggaa
     5701 ggcaagcacg ccgagctggt gaagaaaggc ggcgcctacg cgcggctgca cgcggtgacc
     5761 gaggggtggg tctaggggcg gacctaccgc aaccgcctgt cgctaccctg acccggcgta
     5821 actcagggta gcgacggtgt aatagctatg taactctcgg cgaaattccg gggggaaaca
     5881 cagatgtctg acgtcgtcgc gagcctgcgc accggcagcg aaaagaccta tgggacgatc
     5941 gccatcgtcc ttggggcgct gatctgggtc ttgttcggcc tgggcctgtg ggccgcggtc
     6001 aagacggcca atagccaagt gctcggggtg ctctccctct acattgtcta cggggtcttg
     6061 atctggttcg gctatctgat cgccggggcg atctatcgcg ccaccgcttt cggcaacatg
     6121 atcctgctga gccccaacca gttcccgcag ctctatgaga tggtggagac cggcgccaag
     6181 gaattggggc tgagcccgac gccggcgacc ttcctctaca actccaacgg tctcttcaac
     6241 gccttcgccc ggcggctgat gggcggccgc tacgtcttcc tgacctcagc cctggtcgag
     6301 gccaatgacg acgagcaggt ccggttcgtc atcggccatg aactcggcca ccacgccgcc
     6361 ggtcacctca atccctggct caacttcctg aagatgccgg cctatttcgt gccgttcctg
     6421 atgcccgcct attcccgctc gcgggagtac agctgcgaca acatcggagc ctatctgtcg
     6481 aaggacccgg tcgcctcgcg tagcgcgctc cagatgctgg gctgcggctg ccggcgcctg
     6541 aacggggcca tgagctgcga ggccttcgtg gcgcaggagg ccatggtccc gccggtcgcc
     6601 ggctttgtcg ccgagatctt ccgcagccat ccgcgcctga cccgccgggt cgccgccatc
     6661 cgcgacggcg tcaggacccg ctcggcccgc ggatcctagc cgaccgcctc ccccagcgcc
     6721 ggcgccaggt cgcccttctt ctccacccgc acgcgctcca gccccagcca gccggccatc
     6781 agcctgagct ccgccgccag cctgaccggc gtcgcggccg tggcccaggg ttcggcgtgg
     6841 ctggcctgga cgatcagcac gccggccttg cggtcggcct tcaggtccac tcgcgcggtg
     6901 agcgcgtcgc cctccaggaa cggcagcaca tagtagccgt gggtgcgctt gtgcgccggc
     6961 gtgtagatct cgatccgata gcgcaccgcg aacatccgct cggtgcgctc gcgaaaccag
     7021 atcaggttgt cgaagggcga gagcagggcg ctcgcgtcga cccggcgcgg ccaccgggcg
     7081 gcgggatcga ggtaggccgg ctcgcgccag ccctttaccg tcaccgggac cagcgatccc
     7141 tcctcgacca gctcggccat gcgggccttg gcgccctcca ccggcatgcg gaaatagtcg
     7201 cgcaggtcct tcgacgtggc gacccccatg gcgcggatcg cccggcggta gagctcgcgg
     7261 tgggcgtcct cacgggtcgg cgtcggggcc tcgacgatcg cccggggcag caccttctcg
     7321 ggcaagccat agacccgctc gaaggtcccg cggcgggtgg cggtggtgag ttcgccggtc
     7381 cagaacaggc actcgaccgc ccgtttggcg tcgctccagc cccaccagcc gccctcgccc
     7441 ttctggccca tctccaggtc ggaggcggcc aacggtccgc gggtggcgat ctctttcagc
     7501 accttgtcga cgaagtcgcg ccgttcgcgc aggaagcgcg cgacgccctt ccagacgccg
     7561 gcgccgtcat gggcgtcctg catgcgccag cggaacaggg gctgggatga gagcggcaac
     7621 aacgaggcct cgtgggccca atattcgaag agcggccgct tcttcgccca ggcgacctcc
     7681 tccagcatct cgcgcggata ggcgcccagc cgggaaaagg ccggcaggta gtgggtgcgg
     7741 gagatcacat tgacgctgtc gatctggata acgcccagcc ggtcgatcag cttcaggagc
     7801 tggcgtttgg cgaccggtcc gtccggcctg ggcgtcgcga atccctgggc ggcgagcgcg
     7861 atgcggcggg cctcgccggc ggtcagcttg tccttggcca tgcgcccctg ggtgtctgtt
     7921 ccgagtcgtg gtccgcaagg ctaatcagcg aacaaagaaa gaacaacaaa ccgtttaaaa
     7981 atggttaacg ttaccgccgg gccgccttgg cggtgagaac agactggcaa tcaagcttaa
     8041 ccaaacgccg gtctccctag tgtcccgatt ccgaagttcg caagcgcttg cgggtggcgc
     8101 cggacgaact tcggaatcga taaggacact aggcagcgaa ggcctctagc gtgcttcttt
     8161 ggatttgaag ttcgctcagc gtctgacccg aatgaggcga acttcaattc cagcacgcta
     8221 acgttcgagc cggccgtcgg tgagggcggt cacctcgaac tcgaaaacca ccttgggatc
     8281 gggcttgtcg acgcccttgg cgatggtctt gggggcaaga accttgagga ggtagcgcat
     8341 ggtgttgagc cgggccttct tcttgtgatc ggtgcgcacg atgatccagg gcgcttcgac
     8401 ggtgtgggtg cgcgtcagca tctcgtcgcg ggcctgggtg taggcgtccc acttgtcctg
     8461 ggcgacggcg tcgagcgagc tgaccttcag cgccttgagg gggtcgctct tgcgggcctt
     8521 caggcgcacg gcctgttctt cgcgcgagat gtcgagccac agcttgatga ccttcaggcc
     8581 gctgcccacc agcatggtct cgaagcccga gacatcgcgc agaaaggcct cgtgctcttc
     8641 cggggtgcag aagcccatca ccggctcgac gccggcgcga ttgtaccagg agcggttgaa
     8701 cagcacgaac tccccggcgg cgggcaggtg gcgcacatag cgctggaaat accactgact
     8761 gtgttcgcgc tcggtgggct ttggcagggc gatggcgcgg gtgttgcgca ccgataggtg
     8821 ctcggtgatc cgcttgatcg ccccgtcctt gccggccgcg tcgcgcccct cgaagatcac
     8881 cagggacttt tcgccggatt tgatcgccgc ctgctggaag tgcaccagcg ccgcctgcag
     8941 cgcctcgagt tcgtggtcgt agtcgtcgtc cttggccatg gttcaaccct atgcccgatc
     9001 aagctcggag cgctacaacg ccctggatga tccgcctgtt cattccccac gacctggccg
     9061 ccggcgccga gctggcgctg gaccacccgc agagccacta cctggccgcg gtgatgcgcc
     9121 aggcggtggg cgacgaggtc atgctgttca acggccgcga cggggagtgg cgctcggcca
     9181 tcaccgcggt caccaagcgt gccgtggcgg tcagggcggt cgccctggaa cggccgcagg
     9241 cggcgggccc cgacctcgat ctggtcatgg ccctggtcaa gcgcggccgg ctggagacca
     9301 tcgtcgagaa ggccgccgaa ctcggcgcgc gccgggtgcg cctggtccag acggagcgca
     9361 ccaacgccga ccgcgcccgg gtcgagcgcc tgaccgccat cgccaccgag gccgccgagc
     9421 agaccggccg gctggatgtg ccgcaggtgg ccgagcctgt gaaactggtc aagctcatag
     9481 aggggtggga caccggccgt cgcctgctgt tctgcgacga agccggcgac gccaggccga
     9541 ttctggaggc gctgaagggc cggcccgccg gcccctgggc catattgatc ggcccggaag
     9601 gcgggttttc accggctgag cgggccatgc tccgcgcgct gccctacgcc gtccccgcct
     9661 cgctgggtcc ccggatcctg cgcgccgaca cggccgcgat cggcgcgctc accctgtggc
     9721 aggcggctct cggcgactgg accccttgag cttgccgcga ttgcgcccac ctaggtagcc
     9781 aacgtaaaga gcacggccgc gcggcgagaa cgcgggtccc ggttgggttg gggaaggaca
     9841 ttcatggccg agatcgccgc tgacgatcgt cccctgacgt tcgaggactt ggtcgcctgg
     9901 ttcgacaagg gctccaagcc caaggcggat tggcgtgtcg gcgccgagca cgagaagttc
     9961 gtcttccgcc tcgggagcca tgagccggtt ccctatgacc cggccgctcc tgaacaaggg
    10021 ggcatcaagg cgctgctcga cggcctgacc cgcttcggct gggcgccggt catggaggcc
    10081 ggccatgtca tcgcgctcga gcgcggcaag gccaacgtca gcctggagcc cggcggccag
    10141 ttcgagcttt ccggcgcgcc gctggagacc atccacgaca tctgcgaaga aaccggccag
    10201 cacctccagg aggtcaaggt cgtggccgac gagctcggca tcgggttcct gggcctgggc
    10261 ttcacgccgg tctggcggcg cgaccagatc ccggtcatgc ccaagggccg ctacaagatc
    10321 atgcgcgagt acatgcccaa ggtcggtggc ttaggcctcg acatgatgtt ccgcacctgc
    10381 accgttcagg ccaacctcga cttcggctcc gaggccgaca tggtggcgaa gttccgcacc
    10441 agcctcgctc tgcagccgat ctgtacggcg ctcttcgcca attcaccgtt catcgagggc
    10501 aagccgtcgg gcttcgtttc tgcccgcgcc aacgtctgga ccgacgtcga tcccgaccgc
    10561 accggcatgt tggatttcgt gttccgcgac ggcttcggct tcgagaccta cgccaactat
    10621 gcgctgaacg tgccgatgta tttcgccaag cgcggcgacc gctatatcga cctggccggc
    10681 cgttcgttcc gcgacttcat ggacggcaag ctggctgaac tgccgggcga gcgtccgagc
    10741 atcaaggact gggccgacca caccacgacc atcttcccgg aggtccgcct caagcagtac
    10801 ctggagatgc gcggcgccga ctccgggccc tggagcgcgc tctgtgcgct cccggctctg
    10861 tggatgggga tcttctacga ctcggccgcg ctcgccgccg cgtgggacct ctgcaagcac
    10921 tggaagatcg aggatcacga gcgtttgcgc gccgacgtcg cccgcctggg cctgaaggcc
    10981 gagatcgccg ggcggagcgt ccaggacgtg gccaaggaca tgctggccat cgcccgcgag
    11041 ggcctgaagc gccgcaaccg gctctccggc gggatggtcg acgagaccaa ctacctcgcc
    11101 cagctcgacg agatcgccga cagcgggatc acccaggccg aacgcctgct ggagctctac
    11161 aacggcccct gggccggcga cgccagcaag gtcttcgaga gcttcgccta ctaaacgcta
    11221 agcgtccggc tcgctgacat tggccgccca gtggtccttc tgcgacgcgc ccgagccgga
    11281 gtcggtgtgc tgcacgacgt cgtcgacggt gatggcgaag tcctcttctc ccgccaccac
    11341 ccggccgggg ggctcggcgg ggtgtgggtt caccgtcgcg gcgtccacct gatagacctc
    11401 gacccggtcg ggatagaacg acagccgccc ggcgatctgc gccatcgccg ggtagggctc
    11461 ctcgtaggtc cagacggcgc tctcggcgaa ctggccgtcc atcagcacgg tgaagtaggc
    11521 cgcgtcgccc ttgtaggggc agtgggtcgc agcttcggtg cggctcagat agtccatcga
    11581 aacatcggcg cgggggaagt agacgcgcgg cggatagttc gcctcccgca ggatcagggc
    11641 gtccgcggaa tcggcgatca catggccggc gaacttcgcg cgccagcgcc cggcggtcgg
    11701 ctcgatggtg atcggatggt cggggccggg cgtcttcatg ggctctcctt cgaaggacca
    11761 gaacgcccgg gccatgccca aggctcccgg ctcctagatg gggcgccgca ttgcttgtgt
    11821 tgagggggac cgcgtgattt tctccctcgc aatcacgacg gcgcgcgctc aggggggcgc
    11881 cgcctctccc gacagaggca aggtttcgcc ctaatggaca tcgtcatcgt cgccggcctc
    11941 gtcgtagccg cagtgaccgc ggtccctgtc atcctgcagc tcagacagca cccgcgcggg
    12001 ctgacgatcc tgttcttcgc cgagatgtgg gagcgcttct cctattacgg catgcggggc
    12061 ctgctgatct tctacctgac ccagcacttc ctgttcgacg acaccaccgc ggccggttcc
    12121 tatggcgcct acacctcgct ggtctatctc ttgccggtga tcggcgggtt cctggccgac
    12181 cggttcctgg gcgcgcgcaa ggccgtggcc ttcggggcgc tgctgctggt cgccgggcac
    12241 ttcaccatgg cgctcgaggg cgcaccggcc acccaggtcc tgaccaccca tggggtcgcc
    12301 tacaacttcc agatcaccgg ccgcgccgat ggccgcgacg tgaagctgct ggtgggcggg
    12361 gcgccctacg cctattcggc cgccgccgat ggcggcctgg acatcaaggg cctgccggct
    12421 gccgcgccgc tgccggccca cctggccaag ggcgactacc agatctcggt cgcccaccag
    12481 gatccgctgt tcaagaacat cctgttcctg gcgctggcgc ttatcatcat gggcgtcggt
    12541 ttcctgaagg cgaacatctc agccatcgtc ggccagctct atacgcaggg cgatccgcgc
    12601 cgcgatccag gcttcaccct ctactattac ggcatcaacc tcggctcctt cctagcggcg
    12661 atcttctgcg gctggctggg acagaacatc ggctggtggg ccggcttcgg cgcggccggg
    12721 gtgggcatgg cgttcggttg gctggtcttc gtgctcggca agcccctgct ggagggcaag
    12781 ggcgagccgg tcgaccctgt ggcgctggcc aagcccatca tcggaccgat caacaccgag
    12841 tggctgatct acttgtcggg cttcgcgggc gtcgcggcga tctgggtggt ggtgcagagc
    12901 ttcgccatcg tcagcgcgct cctgggcgtc ggcgcgctct gcgtgctggg ctacctcgcc
    12961 tggtacatgg cgaccaaggc cgacaaggtg gaacgcgagc ggctgatcct ggccatcgtg
    13021 ctgatcctgg cctcggtggt gttctgggcc ctctacgaac agggcggctc ctcgctgaac
    13081 ctcttcgccg agcgcaacgt caacctgcac ctctacgccg gccagtcgat gaagcctgcc
    13141 caggcccaat ccttccagtc cggctggatc ctggtcctgg ccccggtgat ggccgcgctc
    13201 tggacctggc tcggccgctt cggccgcgat cccaatccgg tggccaagtt cggcttcggc
    13261 ctgctgctga tcggcgccag ctactatgtg ctgatcctcg gcgggacgtt cgccggtccg
    13321 gacttcaaga gcccgctgat cttcctggcc ggcgcctatc tgatgcagac gacgggcgag
    13381 atgtgcgtct ccccggtggg cttgtcgcag atgaccaagc tcgccccgcc gctgttgatc
    13441 tcgaccctga tggcgacctg gttcctgggc accgccggcg cccagttcgt ggcggccaag
    13501 atcgcccagc tcacggcctc cgacaccatc ggcggccagg tgctggacgc cggcaaggcg
    13561 ctggccacct acagccatgt cttcggaatg atcggcctgt ggggcctggg cgcgggcgcc
    13621 ctgatgatcg tgctctcgcc ctggctcaag aagctcgccc acggcgccag cgacacccac
    13681 gcccagccga ggccggacgc cgaggtggcg gcggaggcga aggcctagtg tcccgattcc
    13741 gaagttcgca agcgtttgcg gccagctcgg atgaacttcg gaatcgatga ggacactagg
    13801 aggctgatgt tttcctagtg tgcttctctg gatttgaagt tcgcgcggcg catggcctgg
    13861 aaagaggcga acttcaaatc cagcacacta ggtcccgaac atcttgcgga tgcggacgta
    13921 gaagacctgc gacggatatt cgttgcggac cagggtggag gtcagcgggc tgacgtcgcg
    13981 cgtgccggca tagtggtcga actcgcgctt gagcggccgg tgcgtggcgt tgtccacctc
    14041 gacgcgcacg gcgaggtcgg ccttgggctt ccactcgatg aaggggctga cgaaggtgcc
    14101 gtacttgtag gtgtcgacct ccgtggagcg gaagtagcgc tcgcgctgct ggccgaagac
    14161 gtcgatgccc cagttcagcc ggtgctccgg caagtcctgg gtgaagtgca gctcccagtc
    14221 gttgggatgc agcgcggtga tctcccgcgg acgatgggtc gtcgggtcgg tgacctcgga
    14281 ttgccgccag gtggacagcg cctggaactg ggcgcccttc aggccgagct tgtcgagcgg
    14341 cagggtgagg ctgacgatct cctcgtcctt gctcccggcg tcgatgttgc ccggcgcctc
    14401 gaagccgtgg aacatcgcgg tgtcgacagc gtcggtgatc tgcgagtgac gtagcgtcac
    14461 gaccagggag cccttggtcc agaacgtccg ttcgaccgcc gcctcgctga cccagtcctg
    14521 ctcggggacc aggttggggt tgccggcggt gaccgtgccg ctggtcagcg ccgtcgaggc
    14581 cacgaaggcc ccgaagtcga gctggcccac cgcacgctcg aagcgcaccc gcacctgggt
    14641 gtcggcgtcc ggcgaccagg tgaggagcac ccgaggcttg gtgaaataga gggtcttggc
    14701 caggttcacg tcacccgacg aggagatgtt cgagccctcc tctcgcaggc ccccttcgac
    14761 ggtgaatttg ggactcaatc gccagaccgc cttgccgaac agctcgaagc gcttttcctg
    14821 aacggtgacg tccgaggcgg gaaggacgat cggggcgccg ttctgggtga agcggatcag
    14881 gttatccagg gtgttgtagg ccacctccgc cccgccttcc cacgacaggg cgggcttctg
    14941 ctcgaacttc agcgcggcgc gcgcgatgct ctcggccgtg gtggtgtcct gatggaagag
    15001 ttccgcgtcc cccggcgcga tgaagcggtc ggcgtagcgc tcgtgcttgt cctgcctgag
    15061 caggacggtc tcaaggctga ggcgcgcgcc caggccgtgg gtgtagcggc cgccgaactc
    15121 ggtctggaag acgttgtcgt cctggtggtc ggtctccgaa tgggtgtccg gcaggtggat
    15181 gaaatcggtc tcgtcgtcgt cgtacgcctg gctgaagacc cgtgcgttga cccggacacg
    15241 gccgccccac aggggctgct ccaaagcgcc gttggcgatc acctgggtgg cctcgccctg
    15301 ggcgtggatg tggccgatct ccagcggctt gccggtcgca tcgacgctgg tcagcgaacc
    15361 tcgtccgagg ccgccgtcct ggccgttgcc ggcgaacagg cccccgtcca gggaccggtc
    15421 gccgatcgtg ccggaccctt cggcgcgcgc cgcccagtag ttgcggccct ccagcagccg
    15481 ggagtcggca taggccaaaa ggccgtgaaa gccgccgccg gccttgcgaa cgacattggc
    15541 gatcaccgtc ttgccctgca tgtcgatacc cggcgccccg ccgcggatga cgtcgatgtg
    15601 gtccaccgag cttgccggga tccggtagag cagctggtcg agtgtgtcgg tcttggtggc
    15661 cggccgctgg ccatcgacca gcacattgcc cgccgcgccc tcatagccgc gcacggcgtc
    15721 gcccgtgtcg agggtgaatc ccggcaggcg gcccaccatc tcggcggcgt tggccgggcg
    15781 gtaaccggcg aagaagtccg ggccgtaggt ggtcacgccc tcctgcgggg tcgcggcggc
    15841 cgccgccggc gcagcctgcg ggaccgcgcc cggagcgggc gcgacaactg ccgcggcggc
    15901 ctgcgcaaga acgactaaca gcattgaacc ccaactctcc ccgacgcccg ggccactgac
    15961 ccacgc
//
LOCUS       DATAJL010000467         1707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46875,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000467 DATAJL010000000
VERSION     DATAJL010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46875"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1213
                     /gene="hemA"
                     /locus_tag="VHN39_08995"
     CDS             <1..1213
                     /gene="hemA"
                     /locus_tag="VHN39_08995"
                     /EC_number="2.3.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003870 - 5-aminolevulinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="5-aminolevulinate synthase"
                     /protein_id="HEX2816519.1"
                     /translation="AFETALEKVRSEGRYRVFADLKRHRGAFPRATWTRGDGSESDVV
                     VWCSNDYLGQGQNPVVTEAMKATIDLCGAGSGGTRNISGTTHYHVELELELADLHQKE
                     AALLFTSGYVSNEASLSTLHKILPGLIIFSDALNHNSMISGIRAHKGEKHIYRHNDLE
                     HLEELLAAADPALPKLIAFESVYSMDGDVADIPGTVALAKTYGAMTYIDEVHAVGMYG
                     PRGAGVAERDGCMADIDIIEGTLGKAFGVMGGYIAADTVIVDAIRSYADGFIFTTSIP
                     PALAAGAVASIRYLKEHNEIRVAHQERAASLKARLVKAGLPVMPSVCHIVPVLVGDAV
                     HCKMISDILLEEHGIYVQPINYPTVPRGTERLRFTPSPAHTDEMMDKLVAALEKLWVH
                     CNIQRVGGVAA"
     gene            complement(1210..>1707)
                     /locus_tag="VHN39_09000"
     CDS             complement(1210..>1707)
                     /locus_tag="VHN39_09000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816520.1"
                     /translation="GRDPRSELAKRLEAQTPAEPGALRILKDMRIGDEHHDLPIRIEP
                     DALATYLERATEPLAAYREDNVLPPAQLVHMTHMTRTAVLAKAAQPAVGLFGALEVEQ
                     IAGPLRAAVDYVARTKVLKLTESPRTENVWYEVIFTDKSGGPDVGRVLYLLRFMKGSS
                     PLWAV"
BASE COUNT          283 a          591 c          558 g          275 t
ORIGIN      
        1 cgcctttgag accgcccttg agaaggtccg ttccgagggc cgttaccggg tgttcgccga
       61 cctgaagcgc catcgcggcg cgtttccgcg cgccacctgg acgcgcggcg acggctcgga
      121 atccgatgtg gtggtctggt gctccaacga ctacctcggc cagggccaga acccggtggt
      181 caccgaggcc atgaaggcca ccatcgacct ctgcggcgcg ggctcgggcg gcacgcgcaa
      241 catctcgggc acgacccact atcacgtgga gctggaactg gagctcgccg accttcacca
      301 gaaggaagcg gccctgctgt tcacctcggg ctacgtctcc aacgaggcct cactgtccac
      361 cctgcacaag atcctgcccg gcctgatcat cttctccgac gcgctgaacc acaattcgat
      421 gatcagtggc atccgcgccc acaagggcga gaagcacatc tatcgccaca acgaccttga
      481 gcacctcgag gaactgctgg ccgccgccga tccggcgctt ccgaagctga ttgcgtttga
      541 gagcgtctat tccatggacg gcgacgtggc cgacatcccg ggcaccgtgg cgctggccaa
      601 gacatatggc gccatgacct acatcgacga ggtccatgcg gtgggcatgt acggcccgcg
      661 cggggccggc gtcgccgagc gcgacggctg catggccgac atcgacatca tcgaaggcac
      721 gctgggcaag gcgttcgggg tcatgggcgg ctatatcgcc gccgacacgg tgatcgtgga
      781 cgcgatccgc agctacgccg acggctttat cttcaccacc tcgatccccc cggcgctggc
      841 cgcgggcgcc gtggcctcga tccgctatct caaggaacac aacgagatcc gggtggccca
      901 ccaggagcgg gcggcctccc tgaaggcccg cctggtcaag gccggcctgc cggtcatgcc
      961 ctccgtctgc cacatcgtgc cggtgctggt gggcgacgcg gtccactgca agatgatctc
     1021 cgacatcctg ctggaagagc acggcatcta cgtccagccg atcaactatc cgaccgtgcc
     1081 cagaggtacc gagcgcctgc gcttcacccc ttcaccggcc cataccgacg agatgatgga
     1141 caagctggtg gcggcgctcg agaagctctg ggtccactgc aacatccagc gcgtcggcgg
     1201 cgtcgcggcc tagacggccc agaggggcga cgagcccttc atgaacctca gcaggtagag
     1261 cacccggccg acgtcggggc cgccggactt gtcggtgaag atcacttcgt accagacgtt
     1321 ctccgtgcga gggctctcgg tcagcttcag caccttcgtg cgggcgacat agtcgacggc
     1381 cgcgcgcagc ggccccgcga tctgctcgac ctcgagggcg ccgaacaggc cgaccgccgg
     1441 ctgggccgcc ttcgcgagca cggccgtgcg ggtcatgtgc gtcatgtgga ccagttgggc
     1501 cggcggcagg acgttgtcct cgcgataggc ggccagcggt tcggtggcgc gctcaagata
     1561 ggtcgcaagc gcgtccggct cgatgcggat cggcaggtcg tggtgctcat cgccgatcct
     1621 catgtccttc aggatgcgca gggcgccagg ctcggccggc gtctgggcct ccaggcgctt
     1681 ggccagctcc gaccggggat cgcggcc
//
LOCUS       DATAJL010000468         5045 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8224,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000468 DATAJL010000000
VERSION     DATAJL010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5045
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8224"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..876)
                     /locus_tag="VHN39_09005"
     CDS             complement(<1..876)
                     /locus_tag="VHN39_09005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hybrid sensor histidine kinase/response
                     regulator"
                     /protein_id="HEX2816521.1"
                     /translation="MKSLSRRFLISVGLMSLVMTVLGTFGAFVVFERELSNRQIGYLT
                     DYVRERSSNVDRQFSNLSTVHKAAGEELERRMNHLSDADVAKLADSYFPLQADGTRRS
                     RDKYFDGVVSEGAYTYGLGAYLGGAKAATPQEMRALVAGFRLVSDFGQAMRRDYDNFY
                     FFTAQPTRLVMYGPDRPDRLMFYRHEAPADLSIAKEEMARVTLPELDPSRATRCTNLQ
                     RLVQDTVGRRLATACLTPAYVNGRYVGAFGSSMELTHFFLNAVKDTPSGASPLVVTSK
                     GELIAYPGFTDQTRLP"
     gene            complement(1005..1430)
                     /locus_tag="VHN39_09010"
     CDS             complement(1005..1430)
                     /locus_tag="VHN39_09010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2816522.1"
                     /translation="MDDLDDHLLARLRDNARAPVAELARALGLSRTTVQSRLARLERS
                     GVIAGYAVKLSEAREASLIHAFVMLTVEPKQAAAVTAALKRMPGVRKLQSVSGPSDMI
                     AAVEAPNVGEMDSLIDEIGALRGVERTNSSIVLATKFDR"
     gene            1552..2649
                     /locus_tag="VHN39_09015"
     CDS             1552..2649
                     /locus_tag="VHN39_09015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEX2816523.1"
                     /translation="MRKAAVIGAGKIGSTIASLLAGSGDYDVLVVDRSAEALAGLDPR
                     ARTAAMAIDDPAALAQALGGCFAVVNAAPYHLTTVVAEAAKSAGAHYLDLTEDVAASR
                     VVRELAKGSKTAFVPQCGLAPGFITIAAWDLCKHFDELHDVRLRVGALPRYPSNALNY
                     NLTWSTDGVINEYCEPCEAIVEGRLREVPALEECEEFSLDGVTYEAFNTSGGLGTLCQ
                     TLEGKVRNLNYRTIRYPGHAAIMKALLNDLGLRNRRPLLKDILENAVPATLQDVVIVF
                     VTVSGLKDGRLMQETYVNKVFAQVVGGEMKSAIQITTAGAVCAVLDLLADGKLPTHGF
                     IRQEDIPLADVLGNRFGRFYAHDQQALRAAE"
     gene            2655..4187
                     /locus_tag="VHN39_09020"
     CDS             2655..4187
                     /locus_tag="VHN39_09020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX2816524.1"
                     /translation="MTVQTPIGSARAEAAVVLSRLGVAEALWTGGARPVRSPVTGEVI
                     GDVHDTAPDAVAKTVEAAHEAYLTWRKVPAPRRGELVRLLGEELRAAKADLAGLVTLE
                     AGKIVSEANGEVQEMIDICDYAVGLSRQLFGLTLATERPEHRMMETWHPLGVVGVISA
                     FNFPVAVWSWNAALAIVCGDAVVWKPSEKTPLTALAVQALFERAAAKFGDAPANLSAV
                     IVGGREVGEAMVDHPKVPLVSATGSTAMGRAVAPKLAARFARALLELGGNNAAIIAPT
                     ADLDLTLRGVAFAAMGTAGQRCTTLRRLFVHDSLYDAFLPRLRAAYGSVPVGDPRKAG
                     TLVGPLIDATALAGQQRALADAKATGGKITGGERVAVPGCAEASYVRPALVEMPEQAE
                     VVRRETFAPILYVMRYSELSEAIRLQNDVPQGLSSSIFTNDLREAELFTSAQGSDCGI
                     ANVNIGPSGAEIGGAFGGEKETGGGREAGSDSWKTYMRRATNTVNYGKTLPLAQGVEF
                     DV"
     gene            4287..>5045
                     /locus_tag="VHN39_09025"
     CDS             4287..>5045
                     /locus_tag="VHN39_09025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX2816525.1"
                     /translation="MTISTPAAVPSAPNPFASVDALVEGLGSVGYIASRRIATALYMA
                     VHLQKPILVEGSAGVGKTELALSTARLLAQPLIRMQCYEGLDESKALYEWKYGKQLLY
                     TQILKDRMGSALADAPDMDAAMDRLHGMGDLFFSEPFLEPRPLMQALRQDDGCVLLID
                     EIDKSDEAFEAFLLEVLSAYQVSVPELGVIVAKTPPLVFLTSNNVRDLGDALKRRCLH
                     LHIPLPDARLEERIVATRVPGVEAQLRRELVAFVQ"
BASE COUNT          802 a         1779 c         1670 g          794 t
ORIGIN      
        1 gggcaagcgg gtctggtcgg tgaagcccgg ataggcgatc agctcgccct tggaggtgac
       61 caccagcggc gaggcgcccg acggggtgtc cttcacggcg ttgaggaaga agtgggtcag
      121 ctccatcgac gagccgaagg cgcccacata gcggccgttc acataggccg gcgtcaggca
      181 cgccgtcgcc aggcgcctgc cgaccgtatc ctggaccagt cgctgcaggt tggtgcagcg
      241 ggtcgcccgg cttgggtcga gctccggtag ggtgacccgg gccatctcct ccttggcgat
      301 cgacaggtcg gccggcgcct cgtggcggta gaacatcagg cggtcgggcc gatccgggcc
      361 gtacatcacc agacgcgtcg gctgcgccgt gaagaaatag aagttgtcgt agtcgcgccg
      421 catggcctgg ccaaagtcgg agaccaggcg gaacccggcc accagcgcgc gcatctcctg
      481 cggcgttgcg gccttggcgc cgccgaggta ggcgcccagg ccgtaggtgt aggcgccttc
      541 gctcacgacg ccgtcgaaat acttgtcgcg gctgcggcgg gtgccgtcgg cctgtagcgg
      601 gaaatagctg tcggccagct tcgccacgtc ggcgtccgac aggtggttca ttcgccgctc
      661 cagctcttcg ccagcggcct tgtgcacggt ggacaggttg gaaaactggc gatcgacatt
      721 ggagctgcgc tcccggacgt agtccgtgag gtagccgatc tggcggttcg agagctcgcg
      781 ctcgaacaca acgaaggcgc cgaaggtgcc aagcaccgtc atgaccagcg acatcaggcc
      841 gacgctgatc aaaaaccgac gcgagagtga tttcatagac ctcgagaacc ccacttgccc
      901 gcggagctta gccgccgagt gttagggtca agtttacagg gtagattttg gctggcggtc
      961 cttggagcac aggccctccc cttccttcaa cgcgcgaaag gaagtcagcg gtcgaacttg
     1021 gtcgccagca cgatggagga attggtccgc tcgacccccc gcaaggcccc gatctcgtcg
     1081 atcaggctgt ccatctcgcc cacattgggg gcctcgaccg cggcgatcat gtcggagggg
     1141 ccgctcaccg actgcagctt gcgcacgccc ggcatgcgtt tcagggccgc ggtaaccgcg
     1201 gcggcctgct tgggctccac cgtcagcatg acgaaggcgt gaatcagcga cgcctcgcgg
     1261 gcctccgaca gcttcacggc gtagccggcg atcacgcccg accgctccag ccgggcgagc
     1321 cggctctgca ccgtggtgcg cgacaggcca agcgcgcggg ccagttccgc gacgggcgcc
     1381 cgggcattgt ccctcaggcg cgcgagaagg tggtcgtcga gatcgtccat cgtcgtttcg
     1441 ccgaatgctg cagtcgataa gcccaattct ggcacgatta tcgccgagat gcgaattgat
     1501 accgacgccg aaacgaatca ttctctcgcc tgcacagaca gggagcagga catgcgcaag
     1561 gccgccgtca tcggagccgg caagatcggc tccaccatcg ccagcctgct ggcggggtcg
     1621 ggagactacg acgtcctggt cgtcgatcga agcgccgagg cgctcgccgg cctcgacccc
     1681 cgcgcccgga ccgccgccat ggccatcgac gacccggccg cgctcgccca ggcgctcggc
     1741 ggctgcttcg ccgtggtcaa cgccgcgccc tatcacctga ccaccgtggt ggctgaggct
     1801 gccaagtctg cgggcgcgca ttatctcgac ctcactgagg acgtggccgc cagccgcgtg
     1861 gtccgcgagc tcgccaaggg ctccaagacc gccttcgtcc cgcagtgcgg gctcgcgccc
     1921 ggcttcatca ccatcgccgc ctgggatctg tgcaagcatt tcgacgaact gcacgacgtg
     1981 cgcctgcgcg tgggcgccct gccgcgttat ccctccaacg ccttgaatta taacctgacc
     2041 tggtcgaccg acggggtgat caacgaatac tgcgagccct gcgaggcgat cgtcgagggc
     2101 cggctgcgcg aggttccggc gctggaggaa tgcgaggagt tctccctcga cggcgtcacc
     2161 tacgaagcct tcaacacctc gggcggcctg gggacgcttt gccagacgct cgagggcaag
     2221 gtgcgcaacc tcaactaccg caccatccgc tatcccggcc acgcggcgat catgaaggcg
     2281 ctactgaacg acctcggcct gcgcaaccgc cgcccgctct tgaaggacat cctggagaac
     2341 gcggtgcccg cgaccctgca ggatgtggtc atcgttttcg tgaccgtcag tggactgaag
     2401 gatggtcggc tgatgcagga gacctacgtc aacaaggtct tcgcccaggt ggtcggcggc
     2461 gaaatgaaga gcgccatcca gatcaccacc gccggcgccg tctgcgccgt gctggacctg
     2521 ctggccgacg gcaagctgcc gacccacggg ttcatccggc aggaagacat tccgctcgcc
     2581 gacgtgctgg gcaaccgctt cggacgcttc tacgctcacg accagcaagc ccttcgcgcc
     2641 gccgagtaga tcagatgacc gtacagaccc cgatcggctc cgcccgagcc gaagccgccg
     2701 tggtgttgag ccgcctgggc gtggccgagg ccctgtggac cggcggcgcc cgccccgtcc
     2761 gctcgccggt caccggcgag gtcatcggcg acgtgcatga caccgcgccc gacgccgtgg
     2821 cgaagactgt cgaggccgcg cacgaagcct atctgacctg gcgcaaggtc ccggcgcccc
     2881 gccggggtga gcttgtccgg ctgctgggcg aggagctgcg cgccgccaag gccgacctcg
     2941 cgggtctggt caccctggaa gccggcaaga tcgtctccga ggcgaacggc gaagtgcagg
     3001 agatgatcga tatctgcgac tacgccgtgg gcctgtcgcg ccagctcttc ggcctgacgc
     3061 tcgccaccga gcggcccgag caccggatga tggagacctg gcacccgctg ggcgtcgtgg
     3121 gcgtgatctc cgccttcaat ttccccgtgg cggtctggtc gtggaacgcg gcgctggcca
     3181 tcgtctgcgg cgacgccgtg gtctggaagc cgtccgagaa gaccccgctc accgcgctcg
     3241 ctgtccaggc cctgttcgag cgcgccgcgg ccaagttcgg ggacgccccc gcaaaccttt
     3301 cggcggtgat cgtcggtggc cgcgaggtcg gcgaggccat ggtcgaccac cccaaggtcc
     3361 cgctggtctc cgccaccggc tcgaccgcca tgggccgcgc cgtggccccg aagctcgccg
     3421 cccgcttcgc ccgcgcgctc ctggagctcg gcggcaacaa cgccgcaatc atcgcgccca
     3481 ccgccgacct ggacctgacc ctgcgcggcg tcgccttcgc cgccatgggc accgccggcc
     3541 agcgctgcac gacactgcgc cgcctgttcg tccacgacag cctctacgac gccttcctgc
     3601 ctcgcctgag ggcggcctac ggttcggtgc cggttggcga cccgcgcaag gccggaaccc
     3661 tggtcggccc gctgatcgac gcgacggccc tcgctggcca gcagcgggcc ctcgccgacg
     3721 ccaaggcgac cggcggcaag atcaccggcg gcgagcgggt cgcggtcccg ggctgcgcgg
     3781 aggcgtccta cgtgcgcccg gcgcttgtgg agatgccgga acaggccgag gtcgtccgcc
     3841 gtgagacctt cgccccgatc ctctacgtca tgcgctattc ggagctcagc gaagccatcc
     3901 gcctgcagaa cgatgtgccg cagggcctgt cgtcctcgat cttcaccaac gacctgcgcg
     3961 aagccgagct cttcacctcg gcccaggggt cggactgcgg catcgccaac gtcaacatcg
     4021 gcccctcggg cgctgaaatc ggcggggcgt tcggtggcga gaaggaaacc ggcggcggcc
     4081 gcgaggcggg ctccgattcc tggaagacct acatgcgccg ggccaccaac acggtgaact
     4141 acggcaagac cctgccgttg gcccagggcg tggaattcga cgtctgaccc gcggggctgt
     4201 cgcaggcgcg gagcgagggt ttgccctcgg gccgcccgca cggcacaatc cagcctttcg
     4261 aagttcgtat ttgaaagcct gagactttga ccatttccac cccggcggct gtcccgtccg
     4321 cccccaatcc cttcgcctcc gtcgacgccc tggtcgaggg cctgggcagc gtcggctaca
     4381 tcgcctcgcg ccggatcgcg acggcgctct acatggccgt gcacctgcaa aagccgatcc
     4441 tggtcgaagg ctcggccggc gtcggcaaga ccgagctggc gctctccacc gcccgcctgc
     4501 tcgcccagcc gctgatccgc atgcagtgct acgagggcct ggacgaatcc aaggcgctct
     4561 acgagtggaa gtacggcaag cagctgctct acacccagat cctcaaggac cggatgggct
     4621 ccgcgctcgc tgacgcgccc gacatggacg cggctatgga ccgcctccac ggcatgggcg
     4681 acctgttctt ctccgagccc ttcctggagc cgcgaccgct gatgcaggcg ctgcggcagg
     4741 acgacggctg cgtcctcctg atcgacgaga tcgacaagtc ggacgaggcg ttcgaggcct
     4801 tcctgctgga ggtgctgtcg gcctatcagg tctcggtgcc ggagctgggc gtcatcgtcg
     4861 ccaagacccc gccgctggtg ttcctgacct ccaacaacgt ccgcgacctg ggcgacgcgc
     4921 tcaagcgccg ctgcctgcac ctgcatatcc cgctgccgga cgcgcgcctg gaagagcgca
     4981 tcgtcgccac ccgcgtgccg ggcgtggagg cccagctgcg ccgtgagttg gtggccttcg
     5041 tgcag
//
LOCUS       DATAJL010000469         2175 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93726,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000469 DATAJL010000000
VERSION     DATAJL010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2175)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2175)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93726"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(69..1568)
                     /locus_tag="VHN39_09030"
     CDS             complement(69..1568)
                     /locus_tag="VHN39_09030"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEX2816526.1"
                     /translation="MALVPMLDLRTGSSDVVIAHAPANVEAEQALLGALLYDNAAFER
                     IGDYLQARHFFEPFHQRLFAAIESHIRKGQLAEPILLAEQFARDVGFEELGGVRYLAD
                     LVDRAPPAANSPDYARAVYDLALRRDLIRIGGDISTLAGQGDAELSARDQIEAAEQQL
                     YALAETGGVSQGFMTFADALHGAVTMAAEAHSRDGGLAGLSTGLIDLDNKIGGLHPSD
                     LVIIAARPSMGKSSLACNIAFDVARNYAWEPQPDGSKKTVRGGVVAFFSLEMAAEQLA
                     MRLLAEASGVSGDRLRKGEIDASEFGRVRDAALEIQEAPLYIDATGGISMAKLAARAR
                     RLKRMVGLDLLIVDYLQLITGGDGMNRNDNRVQEVSMITQSLKSLAKELSIPVIALAQ
                     LSRQVENREDKKPQLSDLRESGSIEQDADMVMFIYREAYYLSRLEPREGSEEHFKWQE
                     NMDQVRGQADIIIGKQRHGPIGNVKLSYNEDLTKFGNLARDHHSRYDAH"
     gene            complement(1739..>2175)
                     /locus_tag="VHN39_09035"
     CDS             complement(1739..>2175)
                     /locus_tag="VHN39_09035"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2816527.1"
                     /translation="LKVTRTPATKQTILPVPTSLFARQAVLRFEDGSPKNKVTLQSDW
                     TRDNWGGTLRSTFYGDVLSPGTALDGSQDIHTGKRSVWDLEGRYTFPHDVTLALGADN
                     LFDAYPRQVPVALNTTGAAPFTSFSPFGFEGRFVYGRLSIQW"
BASE COUNT          342 a          680 c          778 g          375 t
ORIGIN      
        1 gagcgcgtcc agatcgatcg tcaggcgcgc gctagagacg gcgtttgggg cttcacccat
       61 ggcccgggtc agtgcgcgtc gtagcggctg tgatggtcgc gggcgaggtt gccgaacttg
      121 gtcaggtcct cgttgtagga gagcttcacg ttgccgatcg ggccgtgccg ctgcttgccg
      181 atgataatgt cagcctggcc gcggacctgg tccatgttct cctgccactt gaagtgctct
      241 tcgctgcctt cgcgcggctc caggcggctg aggtaatagg cctcgcggta gatgaacatg
      301 accatgtcgg cgtcctgctc gatggagccg gattcccgca ggtcggagag ttggggcttc
      361 ttgtcctcgc ggttctccac ctgacgtgag agctgggcca gcgcgatcac cgggatcgag
      421 agctccttgg cgagcgactt caggctctgg gtgatcatcg agacttcctg cacccggttg
      481 tcgttccggt tcatgccgtc gccgccggtg atcagctgca gatagtcgac gatcaagagg
      541 tcgaggccga ccatccgctt cagccgccgc gcccgggcgg cgagcttggc catggagatg
      601 ccgccggtgg cgtcgatgta gagcggcgct tcctggatct ccagggccgc gtcgcgcacc
      661 cggccgaact cgctggcgtc gatctcgccc ttgcgcagcc ggtcaccgga aacgccggag
      721 gcttcggcca gcaggcgcat ggccagctgc tcggcggcca tttccaggga gaagaaggcc
      781 accaccccgc cgcggacggt cttcttggag ccgtccggct gcggctccca ggcgtagttg
      841 cgggccacgt cgaaggcgat gttgcaggcc agcgacgatt tccccatcga agggcgcgcg
      901 gcgatgatca ccaggtcgga ggggtgcagg ccgccgatct tgttgtcgag gtcgatcagg
      961 ccggtggaga ggcccgccag gccgccgtcg cggctgtggg cctccgcggc catggtcact
     1021 gcgccgtgca gggcgtcggc gaaggtcatg aagccctggg aaacgccgcc ggtttcagcg
     1081 agcgcataga gctgttgttc agcggcctcg atctggtcgc gggcggaaag ctcggcgtcg
     1141 ccctggccgg cgagcgtcga gatatcgccg ccgatgcgga tcaggtcgcg gcggagcgcc
     1201 aggtcataga ccgcgcgggc atagtccggc gaattggcgg ctggcggggc gcggtcgacc
     1261 aggtcggcca gatagcggac gccgcccagt tcctcgaacc ccacgtcgcg ggcgaactgc
     1321 tcggccagca ggatcggttc ggccagctga cccttgcgga tatggctctc gatcgcggcg
     1381 aacaggcgct gatgaaaggg ctcgaagaag tggcgcgcct gcagatagtc gccgatccgc
     1441 tcgaaagcgg cgttgtcgta gagcagggcg cccagcagcg cctgctcggc ctccacattg
     1501 gccggcgcgt gcgcgatcac gacatccgaa gagccggtac gcaggtcgag catcggaacg
     1561 agggccatgg gttaccgata gcctaacgac gcggcggctc gcactgcgac ttctgcgccc
     1621 gtccacacaa tagagtgagc ctgtggacag ctttgccttg ggaacccgcc cacgaaaaag
     1681 gcgggctgga aataccagcc cgcctcgctc cgttcagcct tgtcggcgaa acgtcagatc
     1741 accattggat gctcaggcgg ccgtagacga accgtccctc gaacccgaac ggggagaacg
     1801 aggtgaaggg cgccgcgccg gtggtgttga gcgcgaccgg aacctggcgc ggataggcgt
     1861 cgaacaggtt gtccgcgccc agcgccaggg tcacgtcgtg ggggaaggtg tagcggcctt
     1921 ccaggtccca gacgctgcgc ttgccggtgt ggatgtcctg gctgccgtcg agcgccgtgc
     1981 cgggcgacag gacgtcgccg tagaaggtcg agcgcagggt cccgccccag ttgtccctgg
     2041 tccagtcact ttgcagggtg actttgttct tgggcgagcc gtcctcgaag cgcaggaccg
     2101 cctgacgcgc gaagagcgag gtcggcaccg gcaggatcgt ctgcttggtg gccggcgtgc
     2161 gggtgacctt caggt
//
LOCUS       DATAJL010000470         2357 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21091,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000470 DATAJL010000000
VERSION     DATAJL010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2357
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21091"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..304
                     /locus_tag="VHN39_09040"
     CDS             <1..304
                     /locus_tag="VHN39_09040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEX2816528.1"
                     /translation="RGDQAAVARAQGVGPKLALRIVTELKDKPIGDGIVAAFHAGASP
                     AAPAKPSATGEAVAALMGLGVAEPAARRVVEQASLRMGDEAEAGALIKAALQELGR"
     gene            301..1332
                     /gene="ruvB"
                     /locus_tag="VHN39_09045"
     CDS             301..1332
                     /gene="ruvB"
                     /locus_tag="VHN39_09045"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEX2816529.1"
                     /translation="MTRLVSGEPAPLEPPDKALRPQTLSEFVGQEQAKGNLRVFIAGA
                     KARAEALDHVLLFGPPGLGKTTLAQIIARELGVNFRATSGPVLAKAGDLAAILTNLEP
                     NDVLFIDEIHRLPANVEEILYPAMEDHVLDLMIGEGPSARSIRIDLAPFTLVAATTRA
                     GLLATPLRDRFGIPIRLEFYTPAELQKVLTQAAGKLGLNLHPDGAAEIAERARGTPRV
                     AGRLLRRVRDFAASDGTDLIDRKAAASALARLDVDEMGLDALDRRYLRALIENYAGGP
                     AGVETLAYAIAEARDAVEDVIEPFLLQQGFIQRTPRGRMACAKAYAHLGLMAPKGVGQ
                     AQPGDLFDE"
     gene            1325..1777
                     /locus_tag="VHN39_09050"
     CDS             1325..1777
                     /locus_tag="VHN39_09050"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HEX2816530.1"
                     /translation="MSDAEPSAGWLVGREHQLPVRIYYEDTDFTGVVYHANYLRYFER
                     GRSDFFRLVGVSHSALLERPDPAAFTITRITVDFKRAARIDDALLVRTTYDAARGPRL
                     FISQRITRGEELIATAAVEAACIDLAGRARKPPPGLAEALSPLFAPPP"
     gene            1854..>2357
                     /locus_tag="VHN39_09055"
     CDS             1854..>2357
                     /locus_tag="VHN39_09055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEX2816531.1"
                     /translation="MDPTAVTPESFNFFVLFMKADWVVKAVMLGLGGASLWSWTVILD
                     KSFRFSGLNKQANEFEDAVASGKSLEEVAAAAGERPRHALPRMLQGALKEWRDARNKG
                     LATDTQAAFLIQRIDRVLDAAIARESARIEEGLGSLAIVATASPFIGLFGTVWGIMNA
                     FQSIAIQK"
BASE COUNT          355 a          925 c          745 g          332 t
ORIGIN      
        1 gcgcggcgac caggccgccg tcgcccgcgc ccagggggtc ggccccaagc tcgccctgcg
       61 tatcgtcacc gagctgaagg acaagccgat cggcgacggc atcgtggccg cctttcacgc
      121 cggggccagc ccagcggctc ccgccaagcc gtcggccacc ggcgaagcgg tcgcggcgct
      181 catgggcctc ggcgtcgccg aacccgccgc ccgccgcgtc gtcgaacagg cgagcctgcg
      241 gatgggtgac gaagccgagg ccggggcgct catcaaggcc gcgctgcagg agctggggcg
      301 gtgacccgcc tcgtctccgg cgaacccgcg ccgctggagc cgcccgacaa ggcgctgcgg
      361 ccgcagacgc tctccgaatt cgtcggccag gagcaggcca agggcaatct ccgcgtcttc
      421 atcgccggcg cgaaggcgcg cgcggaagcg ctagaccacg tcctgctgtt cgggccgccc
      481 ggcctcggca agaccacgct cgcccagatc atcgcccgcg agctgggcgt gaacttccgc
      541 gccacgagcg gccccgtgct ggccaaggcc ggcgacctcg cggccatcct caccaacctg
      601 gaacccaacg acgtcctgtt catcgacgag atccaccgcc tgccggccaa cgtcgaggag
      661 atcctctatc cggccatgga ggaccacgtc ctggacctga tgatcggcga ggggccctcg
      721 gcgcgctcga tccgcatcga tctggcgccc ttcaccctgg tggccgcgac cacccgcgcc
      781 ggcctgctgg ccacgccgct acgcgaccgc ttcggtatcc cgatccggct ggagttctac
      841 acgccggccg agctgcagaa ggtgctgacc caggccgccg gcaagctcgg cctcaacctg
      901 catcccgacg gcgccgccga gatcgccgag cgcgcccgcg gcacgccccg cgtcgccggc
      961 cgcctgttgc gccgcgtccg cgacttcgcc gcctccgacg gcacggacct gatcgacagg
     1021 aaagcggcag cctccgcctt ggcccgcctc gacgtggacg agatgggcct ggacgcgctc
     1081 gaccgccgct acctgcgcgc gctcatcgag aactacgccg gcggcccggc cggggtcgaa
     1141 acgctggcct acgccatcgc cgaggcccgc gacgccgtcg aggacgtcat cgaacccttc
     1201 ctcctccagc aaggcttcat ccagcgcacc ccgcgcggcc gcatggcctg cgccaaggcc
     1261 tacgcccacc tcggcctcat ggctcccaag ggtgtgggcc aggcccagcc gggagacctg
     1321 ttcgatgagt gacgccgaac cgtcagccgg ctggctggtc ggccgcgagc accagctgcc
     1381 ggtgcgcatc tattacgagg acaccgactt caccggcgtc gtctaccacg ccaactacct
     1441 gcgctatttc gaacgtggac ggagcgactt cttccggctg gtgggcgtca gccattccgc
     1501 tcttctggag cgccccgatc ccgcagcctt cacgatcacc cggatcaccg tcgacttcaa
     1561 acgcgccgcg cgcatcgacg acgcgctcct ggtgcgcacg acctatgacg ccgccagggg
     1621 gccgcgcctg ttcatcagcc aacggatcac ccgcggcgag gagctgatcg ccaccgccgc
     1681 tgtcgaggcc gcctgcatcg atcttgcggg ccgcgcgcgc aaaccgccgc cgggcctggc
     1741 tgaggcgctc agcccgctat ttgcgcctcc gccataagat cgccaccgcg aaccttcacc
     1801 accgtccttt ccccccgctt tcgccgcccc tgatcccgga gcccttggac cgcatggacc
     1861 cgaccgccgt cacgcccgag agcttcaact tcttcgtcct gttcatgaaa gccgactggg
     1921 tcgtgaaggc ggtcatgctg ggcctgggcg gcgcgtccct ctggtcctgg accgtgatcc
     1981 tcgacaagtc gttccgcttc tcgggcctga acaagcaggc caacgaattc gaggacgccg
     2041 tcgcctccgg caagagcctg gaggaggtcg ccgccgcggc cggcgaacgg ccgcgccacg
     2101 cgctgccccg catgctgcag ggcgcgctca aggaatggcg cgacgcccgc aacaagggcc
     2161 tggccaccga cacccaggcc gccttcctga tccagcgcat cgaccgcgtc ctcgacgccg
     2221 ccatcgcccg cgaatccgcg cgcatcgagg agggcctggg ctcgctggcc atcgtcgcca
     2281 cggcctcacc cttcattggg ctgtttggga cggtgtgggg catcatgaac gccttccagt
     2341 cgatcgccat ccagaag
//
LOCUS       DATAJL010000471         3090 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58261,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000471 DATAJL010000000
VERSION     DATAJL010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3090
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58261"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..1134)
                     /locus_tag="VHN39_09060"
     CDS             complement(181..1134)
                     /locus_tag="VHN39_09060"
                     /inference="COORDINATES: protein motif:HMM:NF033542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX2816532.1"
                     /translation="MKQGKSNTKIAGVDVCKPWLDVAVWGSQEALRTDNTAAGLAELG
                     AWLKAREVRRVGLEATGGYERALVAWLGAEGYEVVVHQPAEVHNFARFKRLKAKNDKS
                     DAQLIAVATAQVDAVKAANHPRLVELAERLTAYEQASDALAHHKTTMEHLTLADLKAE
                     AEIERRRLTDRKKKLCLDLIRRVKADPHLAGRYGLLLSLPGVGPLIATALVVRMPELG
                     AMKRGQPASLLGVAPFDRDSGLHKGKRFIWGGRARPRRLLYLGALAAKRWDPGLRAFA
                     ERLIAQGKAPKVAIVAVMRKLIEAANIVLARGQPWQARPAN"
     gene            1769..2683
                     /locus_tag="VHN39_09065"
     CDS             1769..2683
                     /locus_tag="VHN39_09065"
                     /inference="COORDINATES: protein motif:HMM:NF012870.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integrase core domain-containing protein"
                     /protein_id="HEX2816533.1"
                     /translation="MGDILKREGLIAPTRRRRRPIERGVRVTPASASNDEWCADFKGW
                     FRIADGTRIDPLTITDAHSRYLIETRIAPQTAVGVKPVFQAAFRAYGLPLAIRSDNGS
                     PFGSSGAGGLTQLSVWWLRLGVRPHFIHPASPQENGRHERMHRTLKAQTVLPPAKDPM
                     EQQQRFDAFRRHFNDERPHEALDQTPPAAHFSPSPRPMPETLENPWYDADHQVRRVRS
                     SGEIKWRGERVFIGEALVGELVGIAPHDEGLHVVRFCGVDLGVIDHKSRFRRFAPLRH
                     GLREAPEPANHSKVSTISPVQSVEVHPG"
     gene            complement(2827..>3090)
                     /locus_tag="VHN39_09070"
     CDS             complement(2827..>3090)
                     /locus_tag="VHN39_09070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816534.1"
                     /translation="DVASLDDCAAELEAIHLQGAPRADGAFQGYFIFIDAREVASSTG
                     LTSFRYPIFQPAQRREIDADLRDLIKARNGRLPSASDIAVERK"
BASE COUNT          503 a         1016 c         1050 g          521 t
ORIGIN      
        1 gatagatgac cgcctgagtt gaaatggaat cgcggctcac ccgacgcccc ctccgtcacg
       61 gcgcgagaaa gagcgccgcg ccacctcccc cgcgtcgctc cgctcgcatg ggaggagtga
      121 gggaaaaatc agcgattcca agctcctccc ctgcgccgct tcgcggggga gcaaccatgt
      181 tcagttggcg ggtcgagctt gccagggttg gcctctggcg aggacgatgt tggcggcttc
      241 gatgagttta cgcatgacgg cgacgatggc gaccttgggc gccttgccct gggcgatgag
      301 gcgttcggcg aaggctctga ggcccggatc ccatcgtttg gcggcgaggg cgccgaggta
      361 gagcaggcgg cgcggccgcg cgcggccgcc ccagatgaag cgcttgccct tgtggaggcc
      421 gctgtcgcga tcgaaggggg cgacgccgag caggctggcg ggttgtccgc gcttcatggc
      481 gcccagttcg ggcatgcgga cgaccaaggc cgtggcgatc agcgggccga ccccgggcag
      541 ggacaggagc aggccgtagc gcccggcgag gtgcgggtcg gccttcacgc gcctgatgag
      601 atcgaggcag agcttcttct tgcggtcggt caggcgccgg cgctcgatct cggcctcggc
      661 cttcaggtcg gccaaggtga ggtgttccat ggtggtcttg tgatgggcca gggcgtcgct
      721 ggcctgttca taggccgtca ggcgctcggc cagttcgacc agccgcggat ggttggccgc
      781 cttgaccgcg tcgacctggg cggtggccac ggcgatcagc tgggcgtcgg acttgtcgtt
      841 cttggccttg agacgcttga accgggcgaa gttgtgaacc tcggccggtt ggtggacgac
      901 cacctcgtaa ccctccgcgc ccagccaggc gaccagcgcc cgctcatagc cgccggtggc
      961 ttcgaggccc acgcgcctca cctcccgcgc cttcagccag gcgccgagct cggcaaggcc
     1021 ggccgcggtg ttgtccgtcc gcagagcctc ctgcgatccc cacaccgcga catccagcca
     1081 gggcttgcag acatcgaccc cggcgatctt cgtgttagac tttccctgtt tcatcgaccc
     1141 aaccttgtgg cttcggaccc aatcgtccct gcaaccatcc gggtcagtga aacgccgacg
     1201 gtgatccagc tcccccacag cctttcaggc tccggtgtgc gcacgatccc cccatcggct
     1261 gtccgcctgg cgtgtcaccg ccaggcggac gtccccggac gacgccgaca aaatagcagg
     1321 ccttcaacaa acaagggtgg ggtgaggggg tcgcgccggg tatgaaccgg gtagagtctc
     1381 gacagaatag accggattga tggtcgacag gttgaatgca tcgcggggag gacttgcgat
     1441 gccgttcttg gagacctgtc ggatggaaca gcgtgttggg atgctctggg actatgacac
     1501 gggggcgttc accgtgacgg aattgtgctc gcgctacggg gttagccggg acacgttcta
     1561 tctttggcga gaccgccggg cgggcggatc ggaggcctgg ttcaccgatc gctcgcacag
     1621 gccgcttaga tgtccacacc gaacggggag ttggcaggcg gctgagatcc tcgaggcgcg
     1681 gcgacggttc gagcatttcg gccccaagaa gatccgggcg tggttgatgc gccagtcgcc
     1741 ggatgtgaga tggccggcgg cctcgaccat gggcgatatt ctgaagcgcg aagggttgat
     1801 cgcaccgacg cgccggcggc gccgtccgat cgagcggggc gttcgggtca cgcccgcctc
     1861 ggcctccaat gacgagtggt gcgccgactt caagggctgg ttcaggatcg cggacggaac
     1921 ccgcatcgat cccctgacca tcaccgacgc gcacagccgc tatctcatcg agacgaggat
     1981 cgcgcctcag acggcagtcg gcgtcaagcc ggtgttccag gcggccttcc gcgcttatgg
     2041 cctgcccctg gccatccgca gcgacaacgg ctcccccttt ggctcgtccg gcgccggcgg
     2101 tctgacccag ctgtcggtat ggtggctgcg gctgggcgtg cgaccgcact tcatccaccc
     2161 ggcctcgcca caggaaaatg ggcgccatga gcgcatgcat cgcaccctca aggctcagac
     2221 cgtgcttccg ccggccaagg acccgatgga gcagcagcag cggttcgacg cattccgccg
     2281 tcacttcaac gatgagcgtc cccacgaagc gctggatcag accccgccgg ccgctcactt
     2341 ctcgccgtcg cccaggccca tgcccgagac attggagaac ccctggtatg acgccgatca
     2401 ccaggtgcgt cgggtccgat cgagcggcga gatcaagtgg cgcggcgagc gcgtcttcat
     2461 cggcgaggcc ctcgtcggcg aactggtcgg catagcccct cacgacgagg gcctccacgt
     2521 cgtgcgattc tgcggcgtcg atctgggcgt catcgaccac aagagccggt tccggcgctt
     2581 cgctccgctt cgccatgggc tccgcgaagc gccagaaccg gccaaccact cgaaagtgtc
     2641 gaccatcagc ccggtccaat ccgtcgaggt tcatcccggt tgaacacgcg tgacgggtct
     2701 ttccggagag cgtgaatact cggcgcaacc ccctcaccct gccctctccc ccgtaaacac
     2761 gggggcgagg gttggtggag gaaggcgggc gaatacgccc ggtcaaaggc cgagttccca
     2821 cccccctcac ttccgctcca cggcgatgtc gctggccgag ggcaggcgtc cgttgcgcgc
     2881 cttgatcaga tcgcgcaggt cggcgtcgat ctcgcggcgt tgggcgggct ggaagatcgg
     2941 atagcgaaag ctcgtgagcc cggtcgacga agcgacttcg cgcgcatcga tgaagatgaa
     3001 atagccctga aaggcgccgt cggcgcgggg ggcgccctgg agatggatgg cttccagctc
     3061 ggcggcgcaa tcgtcgaggc tggccacatc
//
LOCUS       DATAJL010000472         1613 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8258,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000472 DATAJL010000000
VERSION     DATAJL010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8258"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..539)
                     /locus_tag="VHN39_09075"
     CDS             complement(<1..539)
                     /locus_tag="VHN39_09075"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2816535.1"
                     /translation="MKYPSLRLPSVLLATAALVAPLGGCAVGPNYVRPSAPLSPTFKE
                     AAGWSPAAPADTLDRGDWWTLFNDPTLSALEAKVQVSNQNIIAAEAAYREARVTVSEQ
                     QAALFPTVTLNGSGTRSGSGGGGGTLIVNPDGSTSGGAGGGGARSTYRASLGASWEPD
                     VWGRIRRTIEGAKSNAQASA"
     gene            complement(536..>1613)
                     /locus_tag="VHN39_09080"
     CDS             complement(536..>1613)
                     /locus_tag="VHN39_09080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2816536.1"
                     /translation="YTVVMETAPMYSRAPDSLANVYVPANSSISAPTKAQAQAATNAA
                     AVAAANAAASQASSTTAAPQASGGATAASGATAANSANPGARDQATGSAINTSVRRMI
                     PLSAIARYYNRSTPAAINHQDAELATTVSFNLAPGASLSDATAAIQQSEADIGMPNNV
                     RGSFQGTAKGFADTLKQEPVLILAALTAIYIVLGVLYESLVHPITVLSTLPSAGVGAL
                     LALMIFKMEFSVIALIGIFLLIGLVKKNAIMIIDFALDAQRSRDLSAMEAVREACLLR
                     FRPILMTTLAAGLGALPLAVGFGEGSELRQPLGIAIIGGLIASQLLTLLTTPVVYVYI
                     DRLRRRRDERFLSRPGGQGQVQPA"
BASE COUNT          238 a          509 c          614 g          252 t
ORIGIN      
        1 gcgctggcct gggcgttgga cttggcgcct tcgatggtgc ggcgtatgcg accccagacg
       61 tccggctccc agctggcgcc caggctcgca cgataggtcg atcgggcgcc gccgcccccc
      121 gcgccgccgg acgtcgaccc atcgggattg acgataaggg ttccacctcc tccgccgctt
      181 cccgagcgcg tgccgctgcc gttcagggtg acggtcggga aaagcgccgc ctgctgttca
      241 ctgaccgtga cgcgcgcctc gcggtaggcg gcctcggcgg cgatgatgtt ctggttggaa
      301 acctgcacct tggcttcgag cgcgctcagc gtcgggtcgt tgaacagcgt ccaccagtcg
      361 ccgcggtcga gcgtgtcggc aggggcggcg ggcgaccatc cggccgcctc cttgaaggtc
      421 ggcgacaggg gcgctgaggg ccgcacataa ttcggcccga ccgcgcagcc cccaaggggc
      481 gccacgagag cggcggtggc cagcaggacg gagggaaggc ggagcgaggg gtacttcatg
      541 cgggctggac ctggccttgg ccgccggggc ggctgaggaa gcgttcgtcg cggcggcgcc
      601 gcaaccggtc gatgtagacg tagacgacag gcgtcgtcag aagcgtgagc agctggctgg
      661 cgatcaagcc gccgatgatg gcgataccca gcggctgacg aagctccgag ccctcgccga
      721 atcccacggc caggggcagg gcgccgaggc cggcggccag agtggtcatc aggatcggac
      781 ggaagcgcag caggcaggcc tcgcgcaccg cctccatggc ggagaggtcg cggctgcgct
      841 gcgcgtccag cgcaaagtcg atgatcatga tggcgttctt cttcaccagg ccgatcagaa
      901 ggaagatgcc gatcagcgcg atgaccgaga attccatctt gaagatcatc agcgccagta
      961 gggcgccgac gccggccgag ggcagggtgg agagcaccgt gatcggatgg accaggctct
     1021 cgtagagtac accgagcacg atgtagatcg cggtgagcgc cgccaggatc agcaccggct
     1081 cctgcttcag ggtgtcggcg aagcccttgg ctgtgccctg gaagctgcca cgcacattgt
     1141 tgggcatgcc gatgtcggcc tccgactgtt gaatcgcggc cgtcgcgtcg ctgagcgagg
     1201 cgccgggcgc caggttgaag gagaccgtgg tggccaactc agcgtcctgg tggttgatcg
     1261 ccgccggcgt cgagcggttg tagtatcggg cgatggcgct gagcgggatc atccggcgca
     1321 cgctggtgtt gatcgcgctg ccggtggcct ggtcgcgggc gcccggattg gcggagttcg
     1381 ccgcggtcgc gccgctggct gcggtggccc cgccggaggc ttggggcgct gcggtggtgg
     1441 aactcgcctg ggaggccgcg gcgttggcgg cggccaccgc cgcggcgttg gtggcagcct
     1501 gcgcctgggc cttggtaggc gcgctgatcg agctgttggc cggcacatag acgttggcca
     1561 gcgagtccgg cgcgcggctg tacatcgggg cggtctccat caccacggtg tac
//
LOCUS       DATAJL010000473         2015 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21100,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000473 DATAJL010000000
VERSION     DATAJL010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2015)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2015)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2015
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21100"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..921)
                     /locus_tag="VHN39_09085"
     CDS             complement(<1..921)
                     /locus_tag="VHN39_09085"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816537.1"
                     /translation="MADLAPLIETADAKAPPGGEAAWYAGAGGAKLRAALWTPVLAPG
                     ARARGSIVLSGGRTEPIEKYYEVIGECLDRGFVVLVHDWRGQGLSRRDLTDPLRGHAK
                     GAKPYLDDFRLLLNAYAERLPKPWVAVAHSMGAALTLLAMAQGETRFAGAILSAPMLG
                     LRTPFPLVFSRILTGLNLMVGRGAAYTLGGAGKPFDTSFEGNALTHDPVRFARAAGLI
                     AAEPKLALGAPTWSWIDFALRASAFLARPESLRNVTVPVVIVSAEDDPLIDPATQAAA
                     ARHLPQGKFITVPGAYHEILMETDPMRNIFL"
     gene            complement(932..1255)
                     /locus_tag="VHN39_09090"
     CDS             complement(932..1255)
                     /locus_tag="VHN39_09090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HEX2816538.1"
                     /translation="MATLEELTDRIRGAAASDDGLGASGFGASIKLDLKGEGVIHIDG
                     AAVTNDDLPADLVVTVGLKDLTALGKGELDPTRAMMSGRLKLSDMGLAMKLQPKIQSL
                     FSKAA"
     gene            complement(1313..>2015)
                     /locus_tag="VHN39_09095"
     CDS             complement(1313..>2015)
                     /locus_tag="VHN39_09095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2816539.1"
                     /translation="RHPAESLKFWGLRPGQTVVEFWPGAGWFTDIIAPFLAATGGAFY
                     AADLQASDAEGRELVKAYRRKLADHPKLYGKVAMTAFGPTSGPVAPAGSADLVLFLRN
                     LHNWMAAGLAEKAFHDAFAALKPGGVLGVEEHRADPAAAPDATASSGYVAQAYVVQLA
                     QEAGFTLAAASEINANPKDDHNHPFGVWTLPPVRRSSPRGQPADPAFNHAKYDAVGES
                     DRMTLKFVKPATPHG"
BASE COUNT          326 a          665 c          714 g          310 t
ORIGIN      
        1 cagaaagatg ttacgcatcg ggtcggtctc catcaggatt tcgtggtagg cgccggggac
       61 ggtgatgaac ttgccctgcg gcaggtggcg ggcggcggcg gcctgggtgg ccgggtcgat
      121 aagcgggtcg tcctcggcag atacaatgac aaccggtacg gtcacgttcc gaagggactc
      181 cggccgggcg aggaaggccg acgcgcgcag cgcgaaatcg atccagctcc aggtcggggc
      241 gccgagcgcc agtttcggct cggcggcgat caagccggcg gcgcgcgcga agcgcaccgg
      301 atcgtgggtc agggcgttgc cctcgaagct agtgtcgaag ggcttgcccg cgccgcccaa
      361 ggtataggcg gcgccgcggc cgaccatcag attcaggccg gtcagaatcc gcgaaaacac
      421 cagcgggaac ggggtgcgca ggcccagcat cggcgccgag agaatcgcgc cggcgaatcg
      481 cgtctcgccc tgcgccatgg ccagcagcgt cagggccgca cccatggagt gggccaccgc
      541 cacccacggc ttgggcaggc gttcggcata ggcgttcagc agcaggcgga agtcgtcgag
      601 atagggtttg gcgcccttgg cgtggcccct caacggatcg gtcaggtcgc gccgcgacag
      661 cccctgtccg cgccagtcgt ggaccagcac cacgaagccc cggtccaggc attcgccgat
      721 cacctcgtag tacttctcga tgggctcggt gcgcccgccg gagagcacga tcgagccccg
      781 cgctcgcgca cccggcgcca agactggagt ccatagggcc gcgcgcagtt tcgccccgcc
      841 cgcgccagcg taccaagcag cctcgccgcc tggcggggcc ttggcgtcgg cggtctcgat
      901 caggggcgcg aggtcggcca tcacccgtgc cttaagccgc cttggaaaac agagactgaa
      961 tcttcggctg aagtttcatc gccaggccca tgtcggagag cttgagtcgt ccgctcatca
     1021 tggcccgagt cggatcgagt tcgcccttgc caagcgcggt caggtccttc aacccgacgg
     1081 tgaccactag atccgccggc aggtcgtcgt tggtgaccgc cgcgccatcg atgtggatca
     1141 cgccttcgcc cttgagatcg agcttgatcg acgcgccgaa cccggaggcg ccaagaccgt
     1201 cgtcggacgc cgcggcgccg cgaatacggt cggtcagctc ctccagagtc gccatgcccc
     1261 agctctccca aatcagtcgg agcttcgctt ctgacgtgtg ggaagtaaac cgtcagccgt
     1321 gcggtgtggc gggcttcacg aacttgagcg tcattcggtc actttctccg acggcgtcgt
     1381 acttggcgtg attgaacgcc ggatcggcgg gctgcccccg tggcgacgaa cggcgcacag
     1441 gtggaagcgt ccagacaccg aacggatgat tgtggtcgtc ctttggattg gcgttgatct
     1501 cgctggccgc ggcgagcgtg aagccggcct cctgcgcgag ctgcacgaca taggcctggg
     1561 cgacatagcc gctggacgcc gtggcgtcgg gcgccgcggc cgggtcggcg cgatgctcct
     1621 ccacgcccag cacgccgccc ggcttgaggg ccgcgaaagc gtcgtggaag gccttctccg
     1681 ccaggccggc agccatccag ttgtgcaggt tacgcaggaa aaggacgagg tccgccgagc
     1741 cggccggggc gacgggcccg ctggtgggcc cgaaggcggt catcgcgacc ttgccataga
     1801 gcttgggatg atcggccagc ttgcggcggt aggctttgac cagctcacgg ccctcggcgt
     1861 cggaggcctg caggtcggcg gcgtagaacg cgccgccggt ggcggccagg aacggggcga
     1921 tgatgtcggt gaaccagccg gcgccgggcc agaattccac gaccgtctgg ccggggcgca
     1981 ggccccagaa cttcaggctc tccgcgggat ggcgc
//
LOCUS       DATAJL010000474         4190 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58307,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000474 DATAJL010000000
VERSION     DATAJL010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4190)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4190)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4190
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58307"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1013
                     /locus_tag="VHN39_09100"
     CDS             <1..1013
                     /locus_tag="VHN39_09100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2816540.1"
                     /translation="QRRDALDVGPRILRQADADRDLPFALAELGDVSVDVAKFSEGER
                     QIPIRIRLPEDARANIQRIAALRVPTASGSSTTLDSVADIGFEAGPARIDRLNRERQL
                     TVKAELNGVEMGPAQNAVNKLPIMKHLPPGVRAAAIGNQQAFAELIIGFVVAFATAIF
                     LMYAVLVLLFRSFFKPIMILTALPLSFGGAFVGLLTFHLSLSIPSLIGFLMLMGLAAK
                     NSILLVEYAIEREREGYSQYDALIEACRERSRPIIMTTLAMAAGMLPTAFALEKGAEF
                     RQPMAVAVIGGLITSTLLSLVMVPVVYEFVDDFETWLRPRLAKLITPRESLLQPAPED
                     RL"
     gene            1079..1936
                     /locus_tag="VHN39_09105"
     CDS             1079..1936
                     /locus_tag="VHN39_09105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816541.1"
                     /translation="MANFSGEQALASGFRVIFRNPAAIAAWAVFYLVVGLGPMLLVLG
                     PSMAHPVAYNPGDPQSALAAMSRMMIWFPFIWLLAICHAAVAYSAVYRSVLMPEDRQY
                     FYLRLSRRELWLGLTMLALLVLFMACILIASITIALLSRSAPGLVTFLAIVGAIVGAG
                     WLGMRFSMATPMAFAEQRFILMESWRLTQGLGWKLFGVAVCLVVIVLAIEIVLMIPIM
                     IALSLTGAFKALASAAEAGQGATYPIALVVAYLVILPILAALMYAILAAPWANIYQQL
                     TAPDAEAAP"
     gene            complement(1933..2913)
                     /locus_tag="VHN39_09110"
     CDS             complement(1933..2913)
                     /locus_tag="VHN39_09110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine dehydratase"
                     /protein_id="HEX2816542.1"
                     /translation="MSVTFADIEAAAARIEGHAVKTPLIESPALNERLGLRVLIKPET
                     LQRVGAFKFRGAYNRLVQLTADERTRGVVAFSSGNHAQGVALAAKLLGMPALIVMPSD
                     APAMKVANTRGYGAEIRLYDRLTDNREAIAAAISAERGAVVVPAFDDPHIIAGQGTVG
                     LELVRQAEALGATLDVAITPVGGGGLMAGVSTAVKALSPRTAMVGVEPEAFDDTRQSL
                     QAGHRIVTRPTTRSLCDALESPAPGELTFPVLQKTVADIALVSDAEVAEAMRYAFSTL
                     KLVVEPGGSVGLAALLAGKVKLDGGKTVGLVLSGGNVDPELFSRVIRGEI"
     gene            complement(2910..3344)
                     /locus_tag="VHN39_09115"
     CDS             complement(2910..3344)
                     /locus_tag="VHN39_09115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816543.1"
                     /translation="MDIPRFHLAFPVRDLAEARAFYGDLLGCPEGRSNDAWIDFDFHG
                     HQIVAHLAPDEVGPKSGKGGSTSPVDGHDVPVRHFGAILPPAAWDVLAERLTAAGTAF
                     VIEPHTRFKGEAGEQSTMFFLDPSGNALEFKAFADDAMVFAK"
     gene            3522..>4190
                     /locus_tag="VHN39_09120"
     CDS             3522..>4190
                     /locus_tag="VHN39_09120"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEX2816544.1"
                     /translation="MANVTVIGAQWGDEGKGKLVDWLSNRADVVVRFQGGHNAGHTLV
                     VGNQVYKLSLLPSGVVQGKLSVIGNGVVVDPWHLLSEIEKLGGQGVAIGPDLLVVADN
                     ACLILPLHKDLDQAREAAATQKIGTTGRGIGPAYEDKVGRRAIRVADLADREALEAKI
                     DRLMAHHSPLRRGLGLPDIDGAALLAELEAVAPKILPFAKPAWLLLDELVKAGKRVLF
                     EGAQG"
BASE COUNT          609 a         1375 c         1498 g          708 t
ORIGIN      
        1 cgcagcgccg cgatgcgctg gatgttggcc cgcgcatcct ccggcaggcg gatgcggatc
       61 gggatctgcc gttcgccctc gctgaacttg gcgacgttag cgtcgatgtc gccaagttca
      121 gcgagggcga acggcagatc ccgatccgca tccgcctgcc ggaggatgcg cgggccaaca
      181 tccagcgcat cgcggcgctg cgtgtgccca cggcgtccgg cagttcgacc actctcgaca
      241 gcgtcgccga catcggcttc gaagcgggtc ccgcccgtat tgaccgcctg aaccgcgagc
      301 ggcagttgac cgtgaaggcc gagctgaacg gcgtggagat gggtccggcg cagaacgctg
      361 tgaacaagct tccgatcatg aagcacctgc cgcccggagt ccgggccgcg gcgatcggca
      421 accagcaggc gttcgccgag ctgatcatcg gcttcgtcgt ggccttcgcc acggccattt
      481 tcctgatgta cgcggtgctg gtgctgctgt tccgcagctt cttcaagccg atcatgatcc
      541 tgaccgcgct gcccctgtcg ttcggcgggg ccttcgtggg gctgctgacc ttccacctgt
      601 cgctgtcgat cccgtcgctg atcggcttcc tgatgctgat gggcctggcc gcgaagaact
      661 caatcctgct ggtggagtac gccatcgaac gggaacgcga gggctatagc cagtacgacg
      721 cgctgatcga ggcctgccgc gagcggtccc ggccgatcat catgaccacg ctcgccatgg
      781 ccgccggtat gctgcccacg gcctttgcgc tcgagaaggg cgcggagttc cgccagccga
      841 tggctgtagc ggtgatcggc ggcctgatca cctcgacctt gctgtctctg gtcatggtgc
      901 cggtggtcta tgagttcgtc gatgatttcg agacctggct gcggcccagg ctcgccaagc
      961 tgatcacgcc gcgcgagtca ctgctgcagc cggcgcccga ggaccggctc tagcccaggc
     1021 tctggccaag cgtcacgggt ggcgcctatc ctgcctgtaa caggggtggg agacgggcat
     1081 ggcgaacttc tcgggcgagc aggctctggc gtcgggcttt cgggtgatct tccgaaaccc
     1141 ggcggcgatc gcggcctggg cggtattcta cctggtcgtc ggccttggcc cgatgctgtt
     1201 ggtcttgggt cccagcatgg cccatcccgt ggcctacaat ccgggcgacc cgcagtccgc
     1261 cttggcggcc atgtcccgga tgatgatctg gtttccgttc atctggctgc tcgccatctg
     1321 ccacgcggcg gtggcctaca gcgcggtcta tcgctcggtg ctgatgcctg aggaccgcca
     1381 gtatttctac cttcggctga gccgccgcga gctctggctc ggactgacga tgctggccct
     1441 cctggtgctg ttcatggcct gcatcctgat cgcgtcgatc accatcgccc tcttgtcgcg
     1501 cagcgcgccg gggctggtca ccttcctggc catcgtcggc gcgattgtcg gcgccggttg
     1561 gctcggcatg cggttttcca tggcgacgcc gatggccttc gccgagcagc gcttcatcct
     1621 gatggagtca tggcggctga cccaggggct ggggtggaag ctgttcggcg tcgccgtctg
     1681 cctggtggtc atcgtgctgg cgatcgagat cgtcctgatg atcccgatca tgatcgcgct
     1741 cagcctgacc ggcgcgttca aggccctggc gagcgctgcg gaggccgggc agggggcgac
     1801 ctacccgatc gcgctggtcg tggcctacct ggtgatcctt ccgatcctcg cggcgctgat
     1861 gtacgcgatc ctcgccgcgc cctgggcgaa catctaccag cagctcaccg cgccggacgc
     1921 ggaggcggcc ccctagatct cgccgcggat cacccgggaa aacagctccg ggtcgacgtt
     1981 gccgccggag agcaccagac cgacggtctt gccgccgtcg agcttgacct tgccggcgag
     2041 cagcgcggcc agacccaccg atccgccggg ctcgaccacc agcttcaggg tggaaaaggc
     2101 gtagcgcatg gcctcggcca cctcggcgtc ggagaccagc gcgatgtcgg cgacggtctt
     2161 ctgcagcacc gggaaggtga gctcgccggg ggccgggctc tccagcgcgt cgcagagcga
     2221 gcgggtggtg ggcctggtga cgatccggtg gccggcctgc agggattgcc gggtgtcgtc
     2281 gaaggcctcc ggctcgacgc cgaccatggc ggtcctgggc gagagcgcct tcacagccgt
     2341 ggagacaccc gccatcaggc cgccgccgcc gaccggggtg atggccacgt cgagcgtcgc
     2401 gccgagagcc tcagcctggc ggacaagctc gaggccaaca gtaccttggc ccgcgatgat
     2461 gtgcgggtcg tcgaaggccg gcacgaccac ggcgccgcgc tcggccgaga tggccgcagc
     2521 gatcgcctcg cggttgtcgg tgagccggtc gtagagcctg atctcggcgc cgtagccgcg
     2581 ggtgttggcg accttcatgg ccggcgcgtc ggagggcatg acgatcagcg ccggcatccc
     2641 cagcagcttc gccgccagcg ccacgccctg ggcgtggttg ccggaggaga aggccacgac
     2701 gccgcgggtg cgctcgtcgg cggtgagctg gacgagccgg ttgtaggcgc cgcggaactt
     2761 gaaggcgccg acccgctgca gggtctcggg cttgatcagc acgcgcaggc ccaggcgctc
     2821 gttgagcgcc gggctctcga tcagcggggt cttgaccgca tggccttcga tccgggcggc
     2881 ggcggcttcg atgtcggcga aggtgacact catttggcga aaaccatggc gtcgtcggcg
     2941 aaggccttga actccagggc gttgccggag gggtcgagga aaaacatggt cgactgctcg
     3001 ccggcctcgc ccttgaagcg ggtgtggggc tcgatgacga aagcggtccc ggcggcggtc
     3061 aggcgctcgg ccagcacgtc ccaggcggcg ggcggcagga tcgcgccgaa gtggcggacc
     3121 gggacgtcgt ggccatcgac ggggctggtg gacccgcctt tgcctgactt tgggccgacc
     3181 tcgtccggcg ccaggtgggc gacgatctgg tggccgtgga aatcgaagtc gatccaggcg
     3241 tcgttggagc ggccttcagg gcagcccaac aggtcgccgt agaaagcgcg ggcctcggcg
     3301 agatcgcgga ccgggaaggc caggtggaag cgcggaatgt ccatggccgc ctgatagcgc
     3361 gagcttggcg ttcaggcgag gggttgaggt gaagagagcg ctggtctaaa cacccgccgc
     3421 gcctgcttcg gctcggcgcc tcagattgat ccaggccatc cgccgagtcc ctgtcgaagg
     3481 gcggctggtt ctctccggca gggagaggga tcgtacccaa aatggccaat gtcaccgtga
     3541 tcggcgccca gtggggcgac gagggcaagg gcaagctcgt cgactggctt tcgaaccgcg
     3601 ccgatgtggt ggtgcgcttc cagggcggcc acaacgccgg ccacacgctg gtggtgggca
     3661 accaagtcta caagctcagc ctgctgccgt ccggggtggt gcagggcaag ctttccgtca
     3721 tcggcaacgg ggtggtggtc gacccctggc acctgctgtc cgagatcgag aagctgggcg
     3781 ggcagggggt ggcgatcgga cccgatctcc tcgtcgtggc cgacaacgcc tgcctgatcc
     3841 tgccgctgca caaggacctc gaccaggccc gcgaggccgc cgccacccag aagatcggca
     3901 ccaccgggcg cggcatcggg ccggcctatg aggacaaggt cgggcgcagg gccatccgcg
     3961 tcgcggatct cgcggaccgc gaggccctgg aggccaagat cgaccggctg atggcccacc
     4021 attcgccgct gcgccggggc ctcggcctgc cggacatcga cggggccgcc ctgctggccg
     4081 agctggaggc ggtggcgccg aaaatcctgc ccttcgccaa gccggcgtgg ctgttgctgg
     4141 acgagctggt gaaggccggc aagcgggtgc tgttcgaggg cgcccagggc
//
LOCUS       DATAJL010000475         2596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_46992,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000475 DATAJL010000000
VERSION     DATAJL010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_46992"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1165
                     /locus_tag="VHN39_09125"
     CDS             <1..1165
                     /locus_tag="VHN39_09125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016614 - oxidoreductase activity, acting
                     on CH-OH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GMC oxidoreductase"
                     /protein_id="HEX2816545.1"
                     /translation="AGYALTKDFNGLQQEGFGPYQLTIHDGQRWSAARGYLHPVLARP
                     NLTCLTGVRTTRIIVEDGRATGVEIYDEKTKAKRIVHADGEVLLSAGAVQSPHILQLS
                     GIGDPEELTAHGITVVKAMKGVGANLQDHLDVCLSWECPKPITLYSLRKGLIKTLSVG
                     LSYMLFGKGLGRQNFLESGAFLRSRPDLDRPDLQIHTVLAIMQDHGKVQVAKDGFTFH
                     VCQLRPESRGRVGLRSADPLADPAIFANYLAAEEDRRAIREGVKMMRKVAAQAALDPY
                     RTAEYAPGVAVQTDAEIDAWIKATAETIYHPVGTCRMGAAGDPMAVVDAECRVQGIAG
                     LRVVDASVMPTLVGGNTNAPTIMIAEKISDAIRGRAFLPADDAPVFGDEAKAA"
     gene            complement(1162..>2596)
                     /locus_tag="VHN39_09130"
     CDS             complement(1162..>2596)
                     /locus_tag="VHN39_09130"
                     /inference="COORDINATES: protein motif:HMM:TIGR01686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAD-IIIC family phosphatase"
                     /protein_id="HEX2816546.1"
                     /translation="VIEGLRAHSDAPILIDGLPEPTVQPLGLAERGPHAHRNRFRAVN
                     RGLEALADQYSGVYVVDIAATISAEGSARLTDDALVGFTHFGSPGWMLQRPQGELAAV
                     HGIFPDTAPLQALVGPDLYRREAVAARAHIDLLAVVMGLGRKKCVIVDLDGTLWPGVL
                     AETGAPFAWTPEISGHNSYIGLYFGFHEALKALKARGILLACVSKNDEALVRELWKYP
                     DHYPLDRLLTPDDFVTWRVNWEDKAANIASIAEELGFALDAFTFIDDHPVERERVRQA
                     LPAVQVLGEDPFALRHILLTDPAFQVLKLTEESAVRTDLVKAQLGRERQRAASGDDFL
                     ASLEVVTTCERPTEPATLTRVAELFQRTTQFNTTGRTFSEAELTRAAEAGQVFVAYCK
                     DRFGDYGLVAAAVLDGAEIAAFAMSCRVIGLKVEHQFLDFILDAIADQHTEVLARIIE
                     TSRNGPVRHLYADNGFRLEDRTWRKAL"
BASE COUNT          417 a          800 c          986 g          393 t
ORIGIN      
        1 ggccggatat gcgctgacca aggacttcaa cggcctccag caggaggggt tcggccccta
       61 ccagctcacc atccacgatg ggcagcggtg gagcgccgcg cggggctatc tgcacccggt
      121 gctggcgcgg ccgaacctta cctgcctgac gggcgtgcgg accacccgga tcatcgtcga
      181 ggacggccgg gcgaccggcg tcgagatcta tgacgagaag accaaggcca aacgcatcgt
      241 ccacgccgat ggcgaggtgc tgctctcagc cggcgcggtt cagtcgccgc acatcctgca
      301 gctttccggc atcggagatc cggaggagct gacggcgcac gggatcacgg tggtgaaggc
      361 gatgaagggc gtgggcgcca acctgcagga tcacctggat gtctgcctca gctgggagtg
      421 ccccaagccg atcacgctct attccctgag gaaggggctg atcaaaacgc tgagcgtggg
      481 gctctcctac atgctgttcg gcaaggggct cggacggcag aatttcctgg agtcgggcgc
      541 cttcctgcgc tcgcggcccg acctcgaccg gccggacctg cagatacaca ccgtgctggc
      601 gatcatgcag gaccacggca aggtgcaggt ggccaaggac gggttcacct tccacgtctg
      661 tcagctcagg cccgagagcc ggggccgcgt gggcttgagg tccgccgatc cgctggccga
      721 cccggcgatc tttgccaact acctggccgc cgaggaggac cgccgcgcga tccgcgaagg
      781 ggtgaagatg atgcgcaagg tcgccgcgca agcggcgctc gatccctatc gcacggcgga
      841 atatgcgccg ggcgtggctg tgcagaccga cgccgagatc gacgcctgga tcaaggcgac
      901 cgccgagacg atttatcacc cggtgggcac ctgccggatg ggcgcggcgg gcgaccccat
      961 ggcggtggtc gacgccgagt gccgggtgca ggggatcgcg gggctgcggg tggtcgacgc
     1021 ctcggtcatg ccgaccctgg tgggcggcaa caccaatgcg cccaccatca tgatcgccga
     1081 gaagatctcc gacgcgatcc gcgggcgggc gttcctgccg gcggacgatg cgccggtatt
     1141 cggggacgag gcgaaagcgg cctagagcgc tttgcgccag gtccgatcct cgagcctgaa
     1201 gccgttgtcg gcgtagaggt ggcggacggg gccgttgcgc gaggtctcga tgatgcgcgc
     1261 gagcacctcg gtgtgctggt cggcgatggc gtcgaggatg aagtccagga actggtgctc
     1321 gactttcagc ccgatgaccc ggcagctcat ggcgaaggcg gcgatctcgg cgccatcgag
     1381 gacggcggcc gccaccaggc catagtcgcc gaaccggtcc ttgcagtagg ccacgaagac
     1441 ctgacccgcc tcggcggcgc gggtgagttc ggcttccgag aaggtgcggc cggtggtgtt
     1501 gaactgggtg gtgcgctgga agagttcggc cacgcgggtc agcgtcgcag gctcggtggg
     1561 ccgctcgcag gtggtgacca cctccagcga ggccaggaag tcgtcgccgg aggcggcgcg
     1621 ctggcgctcg cggccgagct gggccttcac gaggtcggtg cggacggcgg attcctcggt
     1681 gagcttgagg acctggaagg ccgggtcggt gagcaggatg tggcgcagcg cgaagggatc
     1741 ctcgcccagg acctggacag ccggcaacgc ctggcggacc cgctcgcgct ccaccgggtg
     1801 gtcgtcgatg aaggtgaagg cgtcgagtgc gaagcccagt tcctcggcga tcgaggcgat
     1861 gttggcggcc ttgtcctccc agttgacccg ccaggtgacg aagtcgtcgg gggtcagcag
     1921 gcgatccagc ggatagtggt cggggtattt ccagagctcg cggaccaggg cctcgtcgtt
     1981 cttgctgacg caggcgagca ggatgccgcg ggccttcagc gccttcaggg cctcgtggaa
     2041 gccgaaatag aggccgatgt aggagttgtg gccgctgatc tcgggggtcc aggcgaacgg
     2101 cgcgccggtc tcggccagca cgccgggcca gagcgtcccg tcgaggtcga cgatcacgca
     2161 cttcttgcgg cctaggccca tgaccacggc gagcaggtcg atgtgggcgc gggcggcgac
     2221 ggcttcgcgg cggtagaggt cggggccgac cagggcctgg agcggggcgg tgtcggggaa
     2281 aatgccgtgg accgcggcaa gctctccctg cggccgctgc agcatccagc ccggggagcc
     2341 gaaatgggtg aagccgacga gggcgtcgtc ggtgaggcgg gcggagcctt cggcggaaat
     2401 cgtcgcggcg atatcgacca catagacgcc gctgtattga tcggccagcg cctccaggcc
     2461 ccgattcacc gcgcggaagc ggttgcggtg ggcgtgcggg ccgcgctctg cgaggcctag
     2521 cggctgcacg gtgggttcgg gaaggccgtc gatgaggatc ggggcgtcgg aatgggccct
     2581 gaggccctcg atgacg
//
LOCUS       DATAJL010000476         4916 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47000,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000476 DATAJL010000000
VERSION     DATAJL010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4916
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47000"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VHN39_09135"
     CDS             <1..451
                     /locus_tag="VHN39_09135"
                     /inference="COORDINATES: protein motif:HMM:NF017569.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEX2816547.1"
                     /translation="YSLNEVVDRLDAYAFSGRLIPVNAILDDNGVEGAILKVLQTIGF
                     QQTDYGKALEDFCENHLGGVDRHTTVIFLGDGRSNFADPRLDLMHLIQQRARAVIWLN
                     PEPESYWGQGDSVMHRYERFTHVAKPCNTLGQLERIIEDVLRTYVPH"
     gene            541..1440
                     /locus_tag="VHN39_09140"
     CDS             541..1440
                     /locus_tag="VHN39_09140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2816548.1"
                     /translation="MSETFSAKLELVLKALSISRGRLAADLGVDKSVVGRWVTGAVKP
                     SSHNLSSLTALIAGRVPGFKTLDWDRSFADLANLMGADPSAVPGMDSRGPPGLPLAVA
                     EHILATTSLRGSAYEGFFRSTRPYVLQPGRFVHDHAMVRLDPATGYLKLRMGTGGTVV
                     EGWLLTLHNQLFTIAADVTSGALLFGIFYGVATPRADVIDGLMLGPALDVARTPTACA
                     IIFERIGDLTDDPDADDLRFDTLAQSDPVAAEGSISDEMRNHLVRDIGPEQLAMGGDV
                     LLRLPLARSLSRGPGYQERRKPD"
     gene            1537..2253
                     /locus_tag="VHN39_09145"
     CDS             1537..2253
                     /locus_tag="VHN39_09145"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816549.1"
                     /translation="MSMKFVSAISALSLAAAAAASPAAATTQFFGPTAYLSAADSPFV
                     PASYAQFYLEDFEDGLINTPGLGAAGMGQFCVSNEPGCFQNSGLIDSVGNGGNGNVGH
                     SLFDGEGKITLTFDANALGALPTAAGLVWTDGSNPIHFEAFDQNGVSLGSLIGNSADN
                     SFAGGTAEDRFYGVTNTGGISKLIITDQTGIEIDHVQYGVDVAAPGGVPEPAAWALML
                     TGFFGAGATIRARRRRLRLA"
     gene            complement(2250..2633)
                     /locus_tag="VHN39_09150"
     CDS             complement(2250..2633)
                     /locus_tag="VHN39_09150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816550.1"
                     /translation="MMGPADWLVVGQWLAAAAVMAVFAWEPWRQTRRTAAASPPVEAA
                     RRIASPGYVFVLPLLVLAAPLVPGSGALWRQPHLLLPGVAVALVAVVAVQAVLCHRVL
                     IGSRRRYEALMRAREAPTEDASGLP"
     gene            complement(2630..>4916)
                     /locus_tag="VHN39_09155"
     CDS             complement(2630..>4916)
                     /locus_tag="VHN39_09155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxyl transferase domain-containing protein"
                     /protein_id="HEX2816551.1"
                     /translation="LLTAFEPPTGPGIRVDGFGYAGYRTSARFDSLLAKLIVHAGAGG
                     LPRAIAKAYRALSEFRIEGSATNIAFLQTLLAQPAVAAGEVHTRYIEEHMAELAGAPE
                     SHPRFYFDAPPRSGAPAASQKVGYQVDAADPLAILALGKQEIDQPAEDVEPEGPEGTR
                     PLRAPLQGTVISISVAVGDEVRAGQGLMIMEAMKMEHVISAEVSGIVRQVTVEVGDTV
                     FEGHPLAFLEEAEIAGAGDQDEDVIDLDFIRPDLAEVVERHRLTFDDARPEAVARRRK
                     TGQRTARENIDDLLDPGSFVEYGPLVVAARRRRHSLDELIKTTPADGMLMGLGSVNGE
                     VFPEDKARAAVFAYDYTVLAGTQGGNNHWKLDRMAELALRWRVPTVFFTEGGGGRPGD
                     TEGGGFTRGFEYWGKLSGAVPLVGINSGRCFAGNAAILGCCDVIIATKDSALGMGGPA
                     MVEGGGLGVFRPEEIGPIKVMQANGTIDVLVEDEAEGVAVAKKYLSFFQGPLADWTCA
                     DQRLLRRAIPENRLRVYDIRKLIELIADEGSVLELRPKFGLAMVTAFIRVEGRPMGVF
                     ANNPMHIGGAIDSDASDKAARFLQLCEAFDIPVLSLSDTPGNMVGPEAEKTGLIRHCS
                     RLFVIGANLTVPIFSVILRKSYGLGAIAMTGGSYQAAMFCVSWPTGEFGGMGLEGSVK
                     LGYRNELAAIEDPAARKAKFDEMVAAAYAHGKAMARGSYPALDDVIDPADTRKWIVGG
                     LKALPPIPPRTEKKLRWIDSW"
BASE COUNT          763 a         1800 c         1593 g          760 t
ORIGIN      
        1 ctattccctg aacgaggtgg tggaccggct ggacgcctac gccttctccg gccggctgat
       61 cccggtgaac gccatcctcg acgacaacgg cgtcgagggt gcgatcctca aggtgctgca
      121 gaccatcggt ttccagcaga ccgactacgg taaggcgctg gaggatttct gcgagaacca
      181 cctgggcggt gtcgaccgcc acaccacggt gatcttcctg ggcgacggcc gctccaactt
      241 cgccgacccc aggctcgacc tgatgcacct gatccagcag cgggcccgcg cggtcatctg
      301 gctcaatccc gagcccgaga gctactgggg ccagggcgat agcgtcatgc accgctacga
      361 gcgcttcacc cacgtggcca agccctgcaa cacgctgggc caactggagc ggattatcga
      421 agacgtgctc aggacctacg tgccgcacta gtccctctcg cgcgcgcacg cgatggcgag
      481 tgacttggta agacgttacg ccctatcgtg acgccacccc gcgaatggac ctcgtaaggc
      541 atgtcggaga ccttttccgc gaagctcgaa ctggtgctta aggccctgtc gatcagccgt
      601 ggccggctgg ccgccgatct gggcgtcgac aagtccgtgg tcggccgctg ggtcaccggc
      661 gcggtcaagc cgtccagcca caatctctcc agcctgacgg cgctgatcgc cggtcgcgtg
      721 cccgggttca agacgctgga ctgggaccgc agcttcgccg acctggccaa tctgatgggc
      781 gccgacccca gcgcggtgcc ggggatggat tcgcgcggcc cgcctggcct gccgctggcg
      841 gtcgccgagc acatcctggc cacgacctcc ctgcggggct cggcctatga ggggttcttc
      901 cgctccaccc ggccctacgt cctgcagccc ggccgcttcg tccatgacca cgccatggtc
      961 cgcctcgacc cggccaccgg ctacctgaag ctgcggatgg gcactggcgg cacggtcgtc
     1021 gagggctggt tgctcaccct tcacaatcag ctcttcacca tcgccgccga cgtcacctcg
     1081 ggcgcgctcc tgttcggcat attctatggc gtcgccaccc ccagggccga cgtgatcgac
     1141 gggctcatgc taggccccgc cctcgacgtc gcccgcacgc ccactgcctg cgccatcatc
     1201 tttgaacgca tcggcgacct gaccgatgat ccggacgccg acgacctgcg gttcgacacg
     1261 ctcgcccaga gcgacccggt ggcggcggag ggctcgatct ccgacgaaat gcgcaaccac
     1321 ctggtgcgag acatcggccc agagcagctg gcgatgggcg gcgacgtcct gctgcgcctg
     1381 ccgctcgccc gctcgctgtc gcgcggtccc ggctaccagg aacgccgcaa gccggactga
     1441 aactacgcgc tcgccgatgc acgtcactgc accttcccgc acccgcctcg cgagcgcctt
     1501 tggcccccag tccgcttgag gatgttgggg atagccatga gtatgaagtt cgtcagcgcc
     1561 atttcggcgc tcagcctcgc cgccgctgcg gccgcatcgc cggccgccgc caccacacag
     1621 ttcttcggac cgacagcata cctttccgcg gccgacagcc cgttcgtccc cgccagctac
     1681 gcgcagttct atctggagga cttcgaggac ggcctgatca acacgcctgg gctgggcgct
     1741 gccgggatgg gccagttctg cgtcagcaac gagcccggct gcttccagaa ttccggcctg
     1801 atcgattcgg tcggcaatgg cggcaacggc aatgtcggcc actcgctctt cgacggcgag
     1861 ggcaagatca cgctcacctt cgacgccaat gccctgggcg cgctgcccac cgccgcgggc
     1921 ctcgtctgga ccgacggcag caatcccatc cacttcgagg ccttcgacca gaacggcgtg
     1981 tcgctgggct cgctcatcgg caactcggcg gacaacagct tcgcgggcgg cacggcggag
     2041 gaccgcttct acggcgtgac caatacgggc ggcatctcca agctgatcat caccgaccag
     2101 accgggatcg agatcgacca cgttcagtac ggcgtcgatg tcgctgcccc cggtggcgtg
     2161 ccggaaccgg ccgcctgggc gctgatgctg acgggcttct tcggcgcggg cgcgacgatc
     2221 cgcgcgcgtc ggcggcgact gcgcctggcc tagggcaggc cgctcgcgtc ctcggtgggc
     2281 gcctcgcgcg cccgcatgag cgcctcatag cgtcgccgcg agccgatcag cacgcggtgg
     2341 cagaggacgg cctggaccgc cacgaccgcc accagcgcca ccgcgacgcc cggcagcagc
     2401 agatgcggct ggcgccacag cgcgcccgac cccggaacca ggggcgcggc cagcacgagc
     2461 agaggcagga caaatacgta gcccgggctc gcgatccggc gcgccgcctc tacgggcggt
     2521 gacgcggccg ccgtgcgccg cgtctgccgc cacggctccc aggcgaagac cgccatcacg
     2581 gccgccgccg ccaaccactg gccgaccacc agccagtccg ccggacccat caccagctat
     2641 cgatccagcg cagcttcttc tctgtgcgcg gcggaatcgg cggcagggcc ttcaggccgc
     2701 cgacgatcca cttgcgcgtg tcggccgggt cgatgacgtc gtccagcgcc ggataggacc
     2761 cgcgcgccat ggccttgccg tgggcgtagg cggcggcaac catctcgtcg aacttggcct
     2821 tgcgggccgc agggtcctcg atggccgcca gctcgttgcg gtagccgagc ttcaccgagc
     2881 cctccagccc catgccgccg aactcgccgg tgggccagga gacgcagaac atcgccgcct
     2941 gatagctgcc gccggtcatg gcgatggcgc ccaggccata ggacttgcgc aggatcaccg
     3001 agaagatcgg aacggtcagg ttggccccga tcacgaacaa ccgcgagcag tggcggatca
     3061 ggccggtctt ctccgcctct ggccccacca tgttgccggg cgtgtcggac agtgagagca
     3121 ccgggatgtc gaaggcctcg cagagttgca ggaaccgcgc ggccttgtcc gaggcgtccg
     3181 agtcgatcgc gccgccgata tgcatcgggt tgttggcgaa cacccccatg ggccggcctt
     3241 ccacgcggat gaaggctgtg accatggcca ggccgaactt ggggcgcagt tccaggacag
     3301 agccctcgtc ggcgatcaac tcgatgagct ttcggatgtc gtagacccgc agccggttct
     3361 cggggatcgc gcggcgcagc agccgttgat ccgcacacgt ccaatcggcc agcgggccct
     3421 gaaaaaagga gaggtacttc ttggcgaccg ccacgccctc ggcctcgtcc tcaaccagca
     3481 cgtcgatggt gccgttggcc tgcatgacct tgatcgggcc gatctcctcg ggccggaaga
     3541 cgcccaggcc gccgccctcc accatggccg ggccgcccat gccgagcgcc gagtccttgg
     3601 tggcgatgat cacgtcgcag cagccgagga tggcggcgtt gccggcgaag cagcggccgg
     3661 aattgatccc caccagcggc acggcccctg agagcttgcc ccagtattcg aagccgcgcg
     3721 tgaagccgcc gccctcggtg tcgcccggcc gtcctccgcc accttcggtg aagaacaccg
     3781 tcggcacgcg ccagcgcagc gccagctccg ccatccggtc gagcttccag tggttgttgc
     3841 cgccctgggt gccggccagc accgtgtagt cgtaagcgaa caccgccgcc cgcgccttgt
     3901 cctcggggaa gacctcgccg ttcactgagc ccaggcccat cagcatgccg tcggcgggcg
     3961 tggtcttgat cagctcgtcc aggctgtggc gccggcgccg cgcggccacc accagcggcc
     4021 cgtattccac gaaactgccg ggatcgagca ggtcgtcgat gttctcccgc gccgtccgct
     4081 ggccggtctt gcgccgccgg gccaccgcct cgggccgcgc gtcgtcgaag gtcaggcggt
     4141 ggcgctccac cacctcggcc agatccgggc ggatgaagtc gagatcaatg acgtcttcgt
     4201 cctggtctcc ggcccccgcg atctcggcct cctccaggaa ggccagggga tggccctcga
     4261 acaccgtgtc gcccacctca acggtgacct ggcgcacgat cccggacacc tcggctgaga
     4321 tcacgtgctc catcttcatg gcttccatga tcatcaggcc ctggccggcg cggacctcat
     4381 cgcccaccgc cacggaaatg ctgatcaccg tgccctgcag gggcgcgcgc agcggacggg
     4441 tcccctccgg accttcaggc tcgacatcct ccgcaggctg atcgatctcc tgcttgccga
     4501 gcgccaggat cgccagggga tcggccgcat cgacctggta gccgaccttc tgggacgccg
     4561 ccggcgcccc gctgcgcggc ggggcgtcga agtagaacct cgggtgggac tccggcgcgc
     4621 cagccagctc ggccatgtgc tcttcgatat agcgcgtgtg gacctcgccg gccgccaccg
     4681 ccggctgggc cagcagggtc tgcaggaagg cgatgttggt ggccgaaccc tcgatgcgga
     4741 actccgagag cgcgcggtag gccttggcga tggcgcgcgg gagaccaccg gctccggcat
     4801 ggacgatcag cttggccagg aggctgtcga atctggcgct cgtccggtag ccggcatagc
     4861 cgaacccgtc gacccggatg cccggcccgg tcggcggctc gaacgccgtc agcagg
//
LOCUS       DATAJL010000477         1630 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_119438,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000477 DATAJL010000000
VERSION     DATAJL010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1630
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119438"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..809)
                     /gene="mreC"
                     /locus_tag="VHN39_09160"
     CDS             complement(<1..809)
                     /gene="mreC"
                     /locus_tag="VHN39_09160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEX2816552.1"
                     /translation="MSLRDNPLGELKVPLTWAAAIALVVAVVAATAILLSDRRETFKA
                     EAYGVSRRASDKVLAPVGDVLATPGRWTGAGVDTVRDYFGAGSQNRELKAELKEMKQW
                     RDVAIALKDENARYRTLLGLKTDPPIPMVAARMVTDSRGPFADTRLANTGSERGVKAG
                     NPVMSENGLVGRVIGVTNGASRVLLLTDIASRTPVMIDRTNARAILTGDGGPNPRLDY
                     LRGRDPIRDGDRLLTSGDGGVLPRGLPVGTAVKGLDGRWRVVLASDKAPID"
     gene            complement(872..>1630)
                     /locus_tag="VHN39_09165"
     CDS             complement(872..>1630)
                     /locus_tag="VHN39_09165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEX2816553.1"
                     /translation="VHNRKGFVNPKVIVCVPSGATAVERRAINDSCLNAGGRRVGLID
                     EPMAAAIGAGLPIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKMDEAIIS
                     YMRRNHNLLIGETTAERIKKEIGTARAPADGEGLSIEVKGRDLMQGVPREVRISEKQA
                     SDALSEPVGQIVDAVKMALEATPPELASDIADKGIMLTGGGALLRGLDAEIRDHTGLP
                     VTVADDPLSCVALGCGKVLEHPKWMKGVLESTLA"
BASE COUNT          234 a          569 c          558 g          269 t
ORIGIN      
        1 aagtcgatgg gcgccttgtc agaggccagc accacccgcc agcgcccgtc gaggcccttg
       61 accgccgtcc caaccggcag gccgcgcggc agcacgccgc cgtcgccgga ggtcagcagc
      121 cggtcgccgt cgcggatcgg atcgcggccg cgcaggtagt cgagcctcgg attggggcca
      181 ccgtcgccgg tcaggatggc ccgcgcattg gtccggtcga tcatcaccgg ggtgcgcgag
      241 gcgatgtcgg tcaagagcag gacccggctc gcgccgttgg tcaccccgat cacccggccg
      301 accaggccgt tctcgctcat caccggattg ccggccttga ccccgcgttc ggagccagtg
      361 ttcgccagcc gggtgtcggc gaaggggccc cgactgtcgg tgaccatccg cgcggcgacc
      421 atcgggatcg gcggatcggt cttcagaccg agcagggtgc gatatcgggc gttctcgtcc
      481 ttgagcgcga tggccacgtc acgccactgc ttcatctcct tgagctcagc cttcagctcg
      541 cggttctggg acccggcgcc gaagtagtcg cgcaccgtat cgacgccggc cccggtccag
      601 cggccgggcg tggccagcac gtcgcccacc ggcgccagga ccttgtcgct ggcccggcgc
      661 gacacgccat aggcctcggc cttgaaggtc tcgcggcggt cggagagcag gatggcggtc
      721 gctgcgacca cggcgacgac aagcgcgatc gccgccgccc aggtcagggg gaccttcagt
      781 tcaccgagcg gattgtccct taaggacact tagagagcct ctttgagcgt ggtgttgcga
      841 cagcccccgc cgcgcagcga ctcaagccgc cctaggctaa cgtggattcg aggacgccct
      901 tcatccattt cggatgttcc agcaccttgc cgcagcccag cgccacgcag gaaagcgggt
      961 cgtcggcgac agtcaccggc aggccggtgt ggtcgcggat ttcggcgtcc aggccgcgca
     1021 gcagagcgcc gccgccggtc agcatgatgc ctttgtcggc gatgtctgag gcgagttccg
     1081 gcggggtggc ttcgagcgcc atcttcaccg cgtcgacgat ctggccgacc ggctccgaca
     1141 gggcgtccga cgcctgcttc tcgctgatcc gtacttcgcg cggaacaccc tgcatcaggt
     1201 cgcggccctt gacctcgatg gagaggccct cgccgtcggc cggcgcacgc gcggtgccga
     1261 tttccttctt gatccgttcg gcggtggtct cgccgatcag caggttatgg ttgcggcgca
     1321 tgtaggagat gatcgcttcg tccatcttgt cgccgccgac ccggaccgag cgcgaataga
     1381 cgatgccgga gagcgacagc acggccacct ccgtcgtgcc gccgccgatg tcgacgacca
     1441 tggagcctgt gggctcgtgg atcggcaggc cggcgccgat cgccgcggcc atcggctcat
     1501 cgatcaggcc cacgcgtcgg ccgccggcgt tcaggcagct gtcgttgatg gcgcggcgtt
     1561 ccaccgcggt ggcgccggac ggcacgcaga cgatgacctt ggggttcacg aagcccttgc
     1621 ggttgtgaac
//
LOCUS       DATAJL010000478         2372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47016,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000478 DATAJL010000000
VERSION     DATAJL010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47016"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            21..1223
                     /locus_tag="VHN39_09170"
     CDS             21..1223
                     /locus_tag="VHN39_09170"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEX2816554.1"
                     /translation="MSLESATLSRVKPSATLAADQKGRELKAAGRDIISLAAGEPDFD
                     TPDNIKEAAIKAIRDGKTKYTNVDGIVELKEAIVGKFARENGLTYKTSQVNVSPGGKP
                     VIWNAMISTLNPGDEVVIPTPYWVSYWDIVLLAGGAPKAAPTSAETGFKLKPAELEAA
                     ITPKTRWLILNSPSNPSGAAYTRSELRALADVLLRHPHVWILTDDMYEHLVFGDFEFS
                     TIAQVEPALYDRTLTMNGVSKAYAMTGWRIGYAAGPEPLIKLMAKVMSQTTSNPSSIS
                     QWAAVEALNGPQDFIKTNARLFEERRDLVVSMLNQARGIRCPTPEGAFYVYPSVAELI
                     GRTAPSGKVIASDADFAVELLETEGVSVVFGAAFGLSPHFRISYATSNAQLEDACSRI
                     QRFCAAVK"
     gene            1226..1645
                     /locus_tag="VHN39_09175"
     CDS             1226..1645
                     /locus_tag="VHN39_09175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEX2816555.1"
                     /translation="MPDGGQDAAVTAVFEAYPPDLRAALLGLRRLILETAAETPGVGA
                     LTEALRWKQPSYLTEQSGSGTTIRIDAVKGSADNYALYVNCKTTLLEGYRHLYPDAFR
                     FEGNRALVFSTKAPPPEAALRHCIALALTYHKAATAA"
     gene            complement(1648..>2372)
                     /locus_tag="VHN39_09180"
     CDS             complement(1648..>2372)
                     /locus_tag="VHN39_09180"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEX2816556.1"
                     /translation="LTLVPGQARVTAPRGEPVARTTYNVIGVRHGTTVDADHYVVLLS
                     AHYDHLGVRDGVIFHGANDDASGTAAVMEFARILGSTPARRRSAYFSLFGCEEEGGLG
                     AQYFLSHRPAAITGFTANLEFEMIGVDDPKHPGFLMLTGWDRSTLGPMLAAHGAKVVA
                     DPYPDQHFFQRSDNYQLALQGVIAQTVSAWPIPPTYHAASDDLAHVDLAFMDQVIGSL
                     VGPITWLMDSDFVPAWNPGQQP"
BASE COUNT          404 a          822 c          787 g          359 t
ORIGIN      
        1 ccacgggagc tctccccgcc atgtcgctcg aatccgccac gctgtcccgc gtcaagccgt
       61 ccgccaccct ggcggccgac cagaaagggc gcgagctgaa agcggccggg cgcgacatca
      121 tttcgctggc cgctggcgag cccgacttcg acacgccgga caacatcaag gaagcggcca
      181 tcaaggccat ccgggacggc aagaccaagt acaccaacgt cgatggcatc gtggagctga
      241 aggaggccat cgtcggcaag ttcgcccgcg agaacggcct gacctacaag accagccagg
      301 tgaacgtctc gccgggcggc aagccggtga tctggaacgc catgatctcg acgctgaacc
      361 ccggcgacga ggtggtgatc ccgacgccct attgggtcag ctactgggac attgtcctgc
      421 tggccggggg cgcgcccaag gccgcgccca ccagcgcgga aaccggcttc aagcttaagc
      481 ccgcggagtt ggaggcggcg atcacgccca agacccgctg gctgatcctg aattccccgt
      541 cgaacccgtc gggcgcggcc tatacgcgga gcgaactcag ggctctggcc gatgtgctgc
      601 tgcgccatcc gcacgtctgg atcctgaccg acgacatgta cgagcacctg gtgttcggcg
      661 acttcgaatt ctcgaccatc gcccaggtgg agccggcgct ctacgaccgc accctgacca
      721 tgaacggggt ctccaaggcc tatgccatga ccggctggcg gatcggctac gccgccggcc
      781 ccgagccgct gatcaagctg atggccaagg tgatgagcca gaccacctcc aacccctcgt
      841 cgatctccca gtgggcggcg gtggaagcgc tgaacgggcc gcaggacttc atcaagacca
      901 acgccaggct gttcgaggaa cggcgcgacc tggtggtctc gatgctgaac caggcgcgcg
      961 gcatcaggtg cccgacgccc gagggggcct tctacgtcta tccctccgtg gccgagctga
     1021 tcggcaggac cgcgccctcg ggcaaggtca tcgcatccga cgccgacttc gcggtggagc
     1081 tcttggagac cgagggcgtc tcggtggtgt tcggcgcggc cttcggcctc tcgccgcact
     1141 tccggatcag ttacgcgacc tcgaacgccc agctggaaga cgcctgcagc cgcatccagc
     1201 ggttctgcgc ggcggtgaaa tagcgatgcc agatgggggc caggacgccg ctgtcacagc
     1261 ggtgttcgag gcctatccgc cggacctgcg cgcggcgctt ctcggcctgc gcaggctgat
     1321 ccttgagacg gcggccgaga cccccggcgt gggcgcactg accgaggcgt tgcgctggaa
     1381 gcagccgtcc tacctgaccg aacagtccgg cagcgggacc acgatccgca tcgacgccgt
     1441 gaagggatcg gcggacaatt acgccctcta cgtgaactgc aagaccacgc tgctcgaggg
     1501 ctaccgccac ctctatccgg acgccttccg gttcgaaggt aaccgcgccc tggtcttcag
     1561 caccaaggcg ccgccgcccg aagccgcgct gcggcactgc atcgcgctgg cgctcaccta
     1621 tcacaaggcc gcgaccgcag cctgaattca gggttgctgg ccggggttcc aggcggggac
     1681 gaagtcgcta tccatcagcc aggtgatcgg ccccaccagc gagccgatca cctgatccat
     1741 gaacgccagg tccacgtgcg ccaggtcgtc gctggcggcg tggtaggtcg gcgggattgg
     1801 ccaggcgctg accgtctggg cgatcacgcc ctgcagggcc agttggtagt tgtccgagcg
     1861 ctggaagaag tgctggtccg gatagggatc ggccacgacc ttcgccccgt gcgccgccag
     1921 catcggcccc agcgtcgacc ggtcccagcc ggtcagcatc aggaatcccg ggtgcttcgg
     1981 atcgtcgacg ccgatcatct cgaactccag gttcgcggtg aaaccggtga tggcggccgg
     2041 ccggtggctg aggaagtact gggcgcccag cccgccctcc tcctcgcacc cgaacaggct
     2101 gaagtaggcg ctgcgccggc gcgcgggcgt gctgcccagg atgcgcgcga actccatcac
     2161 cgctgcggtt cccgaggcgt cgtcgttggc gccgtggaag atcaccccgt cgcggacgcc
     2221 caggtgatcg tagtgggcgc tcagcaggac gacatagtgg tccgcgtcga ccgtcgtgcc
     2281 gtggcgcacg ccaatgacat tgtaggtggt ccgcgcgacc ggctcgccgc gcggcgccgt
     2341 cacgcgggcc tggcccggga ccagcgtcag ca
//
LOCUS       DATAJL010000479         1733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8378,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000479 DATAJL010000000
VERSION     DATAJL010000479.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8378"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /locus_tag="VHN39_09185"
     CDS             complement(<1..521)
                     /locus_tag="VHN39_09185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M13"
                     /protein_id="HEX2816557.1"
                     /translation="MIPVRRNILLAAVAVAALSVTPALSAPQAAKGTHKTTQRAAAPS
                     MSKIGATAEAPVPAADVANPKYGTWGFDTSGMDTSIKPGDDFFGYANGKWAARTEIPS
                     DRVRFGNFDKLSVLSENRAHAIDMEAAAGKLTDKDGAKIGAAYASFMNEALADKLGAK
                     PIAPELARIKAVKT"
     gene            complement(651..1145)
                     /locus_tag="VHN39_09190"
     CDS             complement(651..1145)
                     /locus_tag="VHN39_09190"
                     /inference="COORDINATES: protein motif:HMM:NF027567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX2816558.1"
                     /translation="MVKGMQDSDATQTRLWESIETRRIGMLGLTKSGLHAQPMIAFVE
                     RRRKRLWFIARNDTDLVRSVGDGGSGDFIFQDGDLMASISGALNVVEDRRRMGRYWNA
                     AVSAWLPEGLHDPRLILLRMDCVDAEVWISGIGLTKFAWEIAWTGPHPRTSEYERPAQ
                     ATLH"
     gene            complement(1227..>1733)
                     /locus_tag="VHN39_09195"
     CDS             complement(1227..>1733)
                     /locus_tag="VHN39_09195"
                     /inference="COORDINATES: protein motif:HMM:NF018095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0070064 - proline-rich region binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEX2816559.1"
                     /translation="GGLGAVAGSISTKRSEAQALITLVDARSTEQLYVAEGTAQKTDI
                     SFGASGGGGGWSGFAALAGGGYSNTDIGKVVTAAYFNAFVDLVHYMQRDAPTGEQASQ
                     AAGIQGYVVKQAIVMRKTPSPQAAQVRSFNAGDMVYPTGQKNGIWWEVDDENGNRGWV
                     SSAMIGTH"
BASE COUNT          242 a          592 c          585 g          314 t
ORIGIN      
        1 gtcttgaccg ccttgatccg ggccagctcc ggagcgatcg gcttggcgcc cagcttgtcg
       61 gccagggcct cgttcatgaa ggaggcgtag gccgcgccga tcttggcgcc gtccttgtcg
      121 gtcagcttgc cggccgcggc ctccatgtcg atggcgtggg cgcggttctc ggagagcacc
      181 gacagcttgt cgaagttgcc gaaccgcacc cggtccgacg ggatctcggt gcgcgccgcc
      241 cacttgccgt tggcgtagcc gaagaaatcg tcgccgggct tgatggaggt gtccatgccc
      301 gaggtgtcga agccccaggt cccgtacttc ggattggcca cgtccgcggc cgggaccggc
      361 gcctcggcgg tcgccccgat cttgctcatg gagggcgcgg cggcccgttg cgtcgtcttg
      421 tgggtcccct tggccgcctg gggcgcgctc aacgcgggcg tgacgctgag ggccgccacc
      481 gcgacggcgg cgagcaggat gtttcggcga acggggatca tcggcgtctc tctgatgcgc
      541 ggaaaaggga atggcagggc tggtcctgcg gcgccgccaa gaaacggggt attttgatcc
      601 cgcgcaaggg ggcgcgtctc gccccgcccg cgacggccgt caccgatgtc ctagtggagc
      661 gtggcctgcg ccggccgctc gtactccgaa gtccgcggat ggggcccggt ccaggcgatt
      721 tcccaggcga acttggtcag gccgataccg gaaatccaca cctcggcgtc gacgcagtcc
      781 atgcgcagca ggatgagcct gggatcgtgc aacccctccg gcagccaggc cgagaccgcc
      841 gcgttccagt agcgtcccat ccgccggcgg tcctcgacga cgttcagggc gccggagatg
      901 gaggccatca ggtcgccgtc ctggaagatg aaatcgcctg agccgccgtc cccgacgcta
      961 cgcaccaggt cggtgtcgtt gcgggcgatg aaccacagcc gcttacgccg ccgttcgacg
     1021 aaggcgatca tcggctgggc gtggagcccc gacttggtca gaccgagcat gccgatccgc
     1081 cgcgtctcga tcgattccca gagccttgtc tgtgtggcgt cgctgtcttg catgcccttg
     1141 accatgtaac tttcccccga aagtcgttta tcgcccggcg gacggtcccc aacagaccgc
     1201 gccgccgcgc ctttttcttg ctgtccttag tgcgtgccga tcatcgctga tgagacccag
     1261 ccgcgattgc cgttctcgtc gtcgacctcc caccagatgc cgttcttctg gccggtcgga
     1321 tagaccatgt cgccggcgtt gaagcttcgc acctgggcgg cctgcggcga gggcgtcttg
     1381 cgcatcacga tggcctgctt gaccacataa ccttggatgc cggccgcctg actggcctgt
     1441 tcgccggtcg gcgcgtccct ctgcatgtag tgcacgaggt cgacgaaggc gttgaaatag
     1501 gccgcggtca ccaccttgcc gatgtcggtg ttggaatagc cgccgccggc cagcgcggcg
     1561 aagccgctcc acccgccgcc gccgccgctg gcgccgaacg agatgtcggt cttctgggcg
     1621 gtgccctcgg ccacatagag ctgctcggtt gagcgcgcgt cgacgagcgt gatcagcgcc
     1681 tgggcctcag acctcttggt gctgatgctg ccggcgacgg cgccgagccc ccc
//
LOCUS       DATAJL010000480         2704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8394,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000480 DATAJL010000000
VERSION     DATAJL010000480.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8394"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..481)
                     /locus_tag="VHN39_09200"
     CDS             complement(<1..481)
                     /locus_tag="VHN39_09200"
                     /inference="COORDINATES: protein motif:HMM:NF025119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX2816560.1"
                     /translation="MPKVEATEYTDAVCSTAWGAEPLLRRLDWRHGHHLTWRKVMGGL
                     VGDAARGKDGWDRIGAAEPMREYWKRVWRLTGMPYPNPMKLMLKSTDPLGAAVKAAEL
                     QGHDVADAVLRRFRERIFVDGIGPQTPDEFAEATVGVAGLDQARWRADQARPEVAAAY
                     "
     gene            complement(577..1050)
                     /locus_tag="VHN39_09205"
     CDS             complement(577..1050)
                     /locus_tag="VHN39_09205"
                     /inference="COORDINATES: protein motif:HMM:NF024898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2816561.1"
                     /translation="MSAVIQPARSSGDIAAAARLFRDYAGGLGVDLCFQDFEAEVAGL
                     PGAYAPPRGELLLAKDPDGRAVGCVALRPQSSDGVAEMKRLYVCPAGRGAGLGRRLVD
                     AVLQTAAEFGYDEVRLDTLPGMKEAVGLYRSLRFEPIAPYYDTPVAGTLFLARRL"
     gene            complement(1055..1978)
                     /locus_tag="VHN39_09210"
     CDS             complement(1055..1978)
                     /locus_tag="VHN39_09210"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional helix-turn-helix transcriptional
                     regulator/GNAT family N-acetyltransferase"
                     /protein_id="HEX2816562.1"
                     /translation="MSVELSDPVAAVRRFNRFYTRAIGVLEKGYLGTPYTVAEGRVLY
                     EIAKADGIAAKAVGEITGLDAGYLSRIVARLERDGVVARERSARDGRSALLRLTDHGA
                     EVFAPLDQRSAAMVEGLIGALSRPQRDRLTGAMAEVERLLGASPAAPVTLRAHQAGDM
                     GWIVERHGVTYAREYGWNGHIEAETARICADFLDGYDPAAERCWIAQRDGERLGCVFL
                     VKDQESGVARLRLLMLEPAARGLGLGKRLVAECVAFARSAGYREIVLWTHAVLTAARG
                     IYAAQGFELERTWVHDDFGAPEVSETWRLKL"
     gene            complement(2009..>2704)
                     /locus_tag="VHN39_09215"
     CDS             complement(2009..>2704)
                     /locus_tag="VHN39_09215"
                     /inference="COORDINATES: protein motif:HMM:NF012503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016830 - carbon-carbon lyase activity
                     [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-dependent decarboxylase"
                     /protein_id="HEX2816563.1"
                     /translation="ETLAPMARAAGAWTHVDGAFGLWAKTSPAYRDLARGLELCDSWT
                     TDAHKYLNVPYDSGLAFVRDAQAHRAAMTLSTSYLPAGGAARDQIDWNPEFSRRARGF
                     AIYAALRELGREGVAAMVERTCGHAQTLVAGLAALPGAQLMAAPGLNQGLVRFLSPAV
                     GAGEADHDRRTDQVIAAINAGGEAFFGGVTWRGVRCMRVSVCNWRTSAADVTRTLAAA
                     RAALTANMFDSVN"
BASE COUNT          397 a          995 c          946 g          366 t
ORIGIN      
        1 gataggcggc ggcgacctcg ggccgggcct ggtcggcgcg ccagcgcgcc tggtcgaggc
       61 cggcgacgcc gacggtcgcc tcggcgaatt cgtcgggggt ctgtggcccg atcccgtcga
      121 cgaagatccg ctcccggaag cggcgcaaca cggcgtcggc cacgtcgtgg ccctgaagct
      181 cggcggcctt taccgccgcg cccagcgggt cggtcgactt gagcatcagc ttcatggggt
      241 tcggataggg catgccggtc aggcgccaga cccgcttcca gtactcgcgc atgggttccg
      301 cggcgccgat ccggtcccag ccgtccttgc cgcgcgcggc gtcgcccacc agcccgccca
      361 tcaccttgcg ccaggtcagg tggtggccat ggcgccagtc gaggcgccgc agcagcggtt
      421 ccgcgcccca ggccgtcgag cagacggcgt cggtgtattc ggtggcctcg accttgggca
      481 tggcggtctc ccttggccgt gagcgtcccg ccgcgcgagg tcgctggcaa gcgaaaccct
      541 gaggaccggc gaccgccggt cagagccgaa ccaaacctag agccgccgcg ccaggaacag
      601 cgtgcccgcc accggcgtgt cgtagtaggg cgcgatcggc tcaaacctca ggctccgata
      661 gagaccgacc gcctccttca tgcccgggag cgtgtccagc cggacctcgt cgtatccgaa
      721 ctcggccgct gtctgcagga ccgcgtccac gagccgccgc cccagacccg cgcctcggcc
      781 ggcggggcag acatagagcc gcttcatttc ggcgactccg tcggacgact gaggacgcag
      841 cgctacgcat ccgaccgcac gcccatccgg gtccttcgcc agcagaagtt cgccgcgcgg
      901 cggcgcatag gcccctggga gccccgccac ttccgcctcg aagtcctgaa agcacagatc
      961 tacgccaagg ccgccggcgt agtcgcggaa cagccgcgct gcggcggcta tgtctccgct
     1021 ggatcgagct ggctggatga cggccgacac agcgctagag cttcagccgc caggtctcgc
     1081 tgacctccgg cgcgccgaag tcgtcgtgga cccaggtgcg ttccagttcg aagccctggg
     1141 cggcgtagat gccgcgcgcg gcggtcagca ccgcgtgggt ccagagcacg atctcgcggt
     1201 agccggcgga cctcgcgaag gcgacgcatt cggccaccag gcgcttgccg aggccgaggc
     1261 cccgcgccgc cggctccagc atcagcaggc gcaaccgggc gacgccggac tcctggtcct
     1321 tcacgaggaa gacacagccg agccgttcgc catcgcgctg ggcgatccaa cagcgttcgg
     1381 ccgcggggtc atagccatcc aggaagtcgg cgcagatccg cgcggtctcg gcctcgatgt
     1441 ggccgttcca gccgtattcc cgggcatagg tcacgccatg acgctcgacg atccagccca
     1501 tgtcgccggc ctgatgcgcc cgcagggtga ccggcgcggc cggcgatgcg ccgagcaggc
     1561 gctccacctc ggccatggcc ccggtcaggc gatctcgctg cggcctcgac agcgcgccga
     1621 tcaggccctc caccatggcc gccgagcgct ggtcgagcgg cgcgaagacc tcggcgccat
     1681 gatcggtgag acgcaacagg gcgctgcgcc catcgcgcgc cgaccgctcg cgcgccacca
     1741 cgccatcgcg ctccagccgc gccacgatgc ggctcaggta tccggcgtcg agcccggtga
     1801 tctcgcccac cgccttggcg gcgatcccgt cggccttggc gatctcatag agcacccggc
     1861 cctcggccac ggtgtagggc gtgccgaggt agcccttttc cagcaccccg atggcgcgcg
     1921 tgtagaagcg gttgaaccgg cggaccgcgg cgacaggatc ggaaagctcg acggacatgg
     1981 cgttctcccg aacgccagca aagccgggtt agttgacgga gtcaaacata ttggcggtga
     2041 gcgcggcgcg ggccgcggcg agggtgcgcg tcacgtcggc cgcgctggtg cgccagttgc
     2101 agacgctgac ccgcatgcaa cgcacacccc gccaggtgac cccgccgaag aaggcctcgc
     2161 cgccggcgtt gatcgccgcg atcacctgat cggtgcgccg gtcgtgatcg gcctcgccag
     2221 cacccacagc cggcgacagg aagcggacca ggccctggtt caggcccggc gcggccatca
     2281 gctgggcgcc cggcaaggcg gcgagacccg ccaccagcgt ctgggcatgg ccgcaggtgc
     2341 gctccaccat cgccgcgacc ccttcgcggc cgagctcgcg cagggctgcg tagatcgcga
     2401 aaccccgcgc gcggcgggag aactccgggt tccagtcgat ctggtcgcgc gccgcgccgc
     2461 cggccggcag gtagctggtc gacagcgtca tggccgcgcg gtgggcctgc gcgtcgcgca
     2521 cgaaggcgag ccccgagtcg taggggacgt tcaggtactt gtgcgcgtcg gtggtccagc
     2581 tgtcgcagag ttccaggccg cgggcgaggt cgcggtaggc cgggctggtc ttcgcccaga
     2641 gcccgaaggc gccgtccaca tgggtccagg cgccggccgc gcgcgccatg ggcgccagcg
     2701 tctc
//
LOCUS       DATAJL010000481         2075 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8400,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000481 DATAJL010000000
VERSION     DATAJL010000481.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8400"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..179
                     /locus_tag="VHN39_09220"
     CDS             <1..179
                     /locus_tag="VHN39_09220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEX2816564.1"
                     /translation="LDAQIANVDKAARRVSLSVKALEMAEEKEAIEKFGASDSGASLG
                     DILGAALREKASKD"
     gene            304..>2075
                     /locus_tag="VHN39_09225"
     CDS             304..>2075
                     /locus_tag="VHN39_09225"
                     /inference="COORDINATES: protein motif:HMM:NF024371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3857 domain-containing protein"
                     /protein_id="HEX2816565.1"
                     /translation="MSLRLVPALILASILAALAVTPAFAADQPLYAPPAAWVDVAPVP
                     PPAAAEGATAVQVLLDDHQVRLDPLGDAFYARRAIKIFKPEGLTGVKSVSVIWSPDTE
                     SLTFHTLNIIRDGKVIDLLADHKAMLVLRRETNLEQASLDGRITATRQIDGLQVGDIL
                     DFAYTRLRADPVLQGHSFDAEQIALPGLIGRYRTLISWPRSEAVTWKTTPGFGEPVQA
                     TKAGRVTLSLDKTDLQSPKAPIGAPLRFRRVGLLETTSFQSWSEVSKLMAPLYAKAST
                     IAETSPITAEAQAIAARTTDPKARAFAALQLVEDKTRYFFIGIGEGSYVPAAADDTWA
                     RRFGDCKAKTALLLALLRHLGVDAEPVLVNLGAGDGTDELPPSVAAFNHVIVRVKVDG
                     KSYWLDGTRTGDTNPESMHAPPHKWGLPVRSGGADLEKIVEPQITVPTTSTVVRLDAS
                     KGLEDLATARIEITYSGILATQLRALVARSSRTDLERSFRQQYSSPTTGVEIEQVAWR
                     DDPVRDLFTVEMTGTDDMDWRKNPDLGVREFRIGTGAAPRPFPKRDSGPNQDAPFAIA
                     YPSYSRTRTEIVLPNGGQGFTVRGP"
BASE COUNT          336 a          778 c          655 g          306 t
ORIGIN      
        1 gcctggacgc ccagatcgcc aacgtcgaca aggccgcgcg ccgcgtgtcc ctgtcggtca
       61 aggctctgga aatggccgag gaaaaggaag caatcgagaa gttcggcgcc tccgatagcg
      121 gcgcttcgct tggcgacatc ctgggcgcgg ctctgcgcga gaaggcctcc aaggactaaa
      181 tctcggcgcc ttcgggagct agagaatggg cggcggaccg ggcaaccggt ccgccgtttt
      241 ctttttaccc atcggctcta tcgtagggcc acgcgccgtc ggggcgcggt aggagccctt
      301 cgattgtccc tgcgtcttgt cccagccttg atcctggcat cgatcctggc cgccttggcg
      361 gtcacgccgg cgttcgccgc cgaccagccg ctctatgcgc cgccggccgc ctgggtcgac
      421 gtggcgccgg tcccaccgcc ggccgcagcc gagggcgcca cggccgtcca ggtgctgctc
      481 gacgatcatc aggtgcgcct cgatccgctg ggcgacgcct tctatgcccg gcgtgcgatc
      541 aagatcttca agcccgaggg cctgaccggc gtgaagtcgg tgagcgtgat ctggagcccc
      601 gacaccgaga gcctgacctt ccacaccctc aacatcatcc gcgacggcaa ggtcatcgac
      661 ctcctggccg accacaaggc catgctggtg cttcgccgcg agaccaacct ggagcaggcg
      721 agccttgacg gccggatcac cgccacgcgg cagatcgacg gcctgcaggt gggcgacatc
      781 ctcgacttcg cctacacccg cctccgtgct gacccggttt tgcagggcca ttccttcgac
      841 gccgaacaga tcgcccttcc cgggctgatc ggccgctacc gcacgctgat ctcctggccc
      901 aggagcgagg ccgtgacctg gaagaccacg ccgggcttcg gcgagccggt ccaggcgacc
      961 aaggccggcc gcgtcacctt gagcctcgac aagaccgacc tccagtcccc caaggcgccg
     1021 ataggcgcgc cccttcggtt ccgccgcgtc ggcctcctgg agaccaccag cttccagagc
     1081 tggagcgagg tctccaagct gatggccccg ctctacgcca aggcctccac gatcgcggag
     1141 acctcgccga tcaccgcgga ggcgcaggcc atcgcggcca ggaccaccga tcccaaggcc
     1201 cgcgccttcg cggccctgca gctcgtggag gacaagaccc gctacttctt catcggcatc
     1261 ggcgagggca gctacgttcc ggccgccgct gacgacacct gggcccggcg cttcggcgac
     1321 tgcaaggcca agaccgcgct cctgctggcc ctgctcaggc atctcggcgt cgacgctgag
     1381 ccggtgctgg tcaacctggg cgcgggcgac gggaccgacg agctgccgcc ctcggtggcg
     1441 gccttcaacc acgtgatcgt gcgggtgaag gtcgacggca agtcctactg gctcgacggc
     1501 acgcggaccg gcgacaccaa tccggaatcg atgcacgcgc cgccgcacaa gtggggcctg
     1561 ccggtgcgca gcggcggcgc cgatctggaa aagatcgtcg agccgcagat caccgtgccc
     1621 acgacctcga cggtcgtccg cctcgacgcc tccaagggtc ttgaggatct ggccaccgcc
     1681 cggatcgaga tcacctattc cggcatcctc gccacccaac tgcgggcgct cgtggcccgc
     1741 agctcgcgaa cggacctcga gcgcagcttc cgccagcagt actcgagccc gaccaccggg
     1801 gtggagatcg aacaggtggc ctggcgcgat gacccggtcc gcgacctctt caccgtcgag
     1861 atgaccggca ccgacgacat ggactggcgc aagaaccccg acctgggcgt ccgcgagttc
     1921 cgcatcggga ccggcgccgc gcccaggccc ttccccaagc gcgactccgg ccccaaccag
     1981 gacgcgccct tcgccatcgc ctatccttcc tacagccgca cccgcaccga gatcgtcctg
     2041 cccaacggcg gccagggctt cacggtgcgc gggcc
//
LOCUS       DATAJL010000482         1974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34405,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000482 DATAJL010000000
VERSION     DATAJL010000482.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34405"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..575)
                     /locus_tag="VHN39_09230"
     CDS             complement(<1..575)
                     /locus_tag="VHN39_09230"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2816566.1"
                     /translation="MKTEVSIPTPDGAARAVVFTPDHGDGPWPAAILFMDAPAIRPAM
                     FEMGERLAQAGYYVLLPDLFWRAGPYDPPNIAAARAGDPEAVAMFQKLRGSTDAKRQM
                     ADTGVYLDWLKTQPKAKADKVGVTGYCMGGGIALRAAGTFPNRIAVAASFHGGNQATD
                     AEDSPHLLAPKMKAKILLAGADEDRGFEEAQ"
     gene            complement(593..1561)
                     /locus_tag="VHN39_09235"
     CDS             complement(593..1561)
                     /locus_tag="VHN39_09235"
                     /inference="COORDINATES: protein motif:HMM:NF024841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEX2816567.1"
                     /translation="MRRLAAALAALVLAACGGPVVERAKAPGPASPAITVKAEALPLN
                     PVDPKQTFVGDFVYAGGLKLTSAQTARLHGLSDLDVQPDGSLISVGDEGDLLRARVVL
                     DPAGRLTGLSDARLTALVGLDGKPLQGKDNRDSEGLALMPSGDLLISFERHDRIWLYP
                     KDGGAPRAVPSPAVKFPYNEGMEALAPDPEQGPGAYFTGGETTGRTWTCTLTSPCVDG
                     PKVDLAVGFGLVAARRLPQGRTAWLLRAFNPITRSVIDLRITDAAGRVVDQMELRGPL
                     TVDNFEGLAAVPSPDGGIRFYLISDDNFSSSQRTLLLAFDWKPPAH"
     gene            complement(1558..>1974)
                     /locus_tag="VHN39_09240"
     CDS             complement(1558..>1974)
                     /locus_tag="VHN39_09240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobaltochelatase subunit CobT"
                     /protein_id="HEX2816568.1"
                     /translation="ALMWAHQRLIGRQESRRILMVISDGAPVDDSTLSVNSGHYLERH
                     LREVIGEIEGKSPVQLIAIGIGHDVTRYYRRAVTIVDVEQLAGAITDQLAELFEEEPR
                     RMTRRNAGLLQPPPNTQGPSGPAKRSTFKEVRRAVA"
BASE COUNT          282 a          683 c          702 g          307 t
ORIGIN      
        1 cactgggcct cctcgaagcc gcggtcctcg tcggcgccgg ccagcaggat cttggccttc
       61 atcttcggcg ccagcaggtg cgggctgtcc tcggcgtcgg tggcctgatt gccgccgtgg
      121 aaggacgccg cgaccgcgat ccggttgggg aaggtcccgg cggcgcgcag cgcgatgccg
      181 ccgcccatgc agtagccggt gacgccgacc ttgtcggcct tggccttggg ctgggtcttc
      241 agccagtcga ggtagacgcc ggtgtcggcc atctgccgct tcgcgtccgt cgagccgcgc
      301 agtttctgga acatcgccac cgcctcggga tcgccggcgc gcgcggccgc gatgttcggc
      361 gggtcgtagg gtcccgcgcg ccagaacagg tcgggcagca gcacgtagta gccggcctgg
      421 gccagccgct cacccatctc gaacatcgcc gggcggatcg ccggcgcgtc catgaagagg
      481 atcgccgcgg gccaggggcc atcgccatgg tctggggtga agacaacggc gcgcgcggcg
      541 ccgtccggtg tggggatgga aacctcggtc ttcatgaaat cacctcccgc gttcaatgcg
      601 ctggcggctt ccagtcgaac gcgagcagga gcgtgcgttg ggagctcgaa aagttgtcgt
      661 cggaaatcag gtagaagcga atgccgccgt cagggctcgg cacggccgcc agcccctcga
      721 aattatccac cgtcaacggc ccgcgcagct ccatctggtc gaccacacgg ccggctgcat
      781 cggtaatccg caggtcgatg acgctgcggg tgatcgggtt gaacgcccgc agcagccagg
      841 ccgtgcgccc ctgcggcagc cggcgcgcgg cgaccaggcc aaagcccacg gccaggtcga
      901 ccttgggccc gtcgacgcaa ggcgaggtga gcgtgcaggt ccaggtccgc cccgtggtct
      961 cgccgccggt gaaataggcc ccggggccct gctccggatc gggcgccagg gcctccatgc
     1021 cctcgttgta ggggaacttc acggcgggcg aggggaccgc gcgcggcgcc ccgccgtcct
     1081 tcggatagag ccagatgcgg tcgtggcgtt cgaagctgat cagcaggtct ccgctgggca
     1141 tcagcgccag gccctcggaa tcgcggttgt ccttgccctg cagaggcttg ccgtcgaggc
     1201 cgacgagcgc ggtcagcctg gcgtcgctca agcccgtcag ccggcccgcc gggtccagca
     1261 ccaccctggc cctcaggaga tcgccctcgt cgccgaccga gatcagcgat ccgtccggct
     1321 ggacgtcgag gtcggagagg ccgtgcaggc gcgcagtctg ggccgaggtc agcttcaggc
     1381 ccccggcgta gacgaagtca ccgacgaagg tctgcttcgg gtcgaccgga ttgagcggca
     1441 gggcctcggc cttgacggtg atcgccggac tggcgggacc cggggctttc gcccgttcca
     1501 cgaccggccc accgcaggcg gccagcacaa gtgcggccag cgctgcggcg agccgcctca
     1561 agccaccgcc ctccggactt ccttgaaggt ggaacgcttg gcgggaccgg agggcccttg
     1621 cgtattgggc ggcggctgca gcaatcctgc atttcgcctg gtcattcgcc ggggctcctc
     1681 ctcgaagagc tcggccagct ggtcggtgat ggcgccggcc agctgctcca cgtcgacgat
     1741 ggtcaccgcg cggcggtagt agcgggtcac gtcgtggccg atgccgatgg cgatcagctg
     1801 gacggggctc tttccctcga tctcgccgat cacctcgcgc aggtggcgct ccaggtagtg
     1861 gccggagttc acgctgagcg tcgagtcgtc caccggcgcc ccgtcggaga tcaccatcag
     1921 gatgcgccgc gactcctgtc gcccgatcag ccgctggtgg gcccacatca gggc
//
LOCUS       DATAJL010000483         1547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47088,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000483 DATAJL010000000
VERSION     DATAJL010000483.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47088"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VHN39_09245"
     CDS             <1..286
                     /locus_tag="VHN39_09245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816569.1"
                     /translation="ADAELMAAFEGLDAAEVFRTSQGRLIAGDGPAAAFRLPETPGVA
                     VEPLRAEGLKCARSRRILPEVGSDHRYPDLSLRDADAVAAWDATHEKEPA"
     gene            283..807
                     /gene="lspA"
                     /locus_tag="VHN39_09250"
     CDS             283..807
                     /gene="lspA"
                     /locus_tag="VHN39_09250"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEX2816570.1"
                     /translation="MTGVTRLGWTAFVIAIAIIVADQAVKTWVLDVLRLQEGQSIAVF
                     GPLHLTGVWNPGVSFGFLQAQHDLVRWLLVTFSIVVAIFLAAWVRKSDRPLFAVAVGL
                     LMGGAIGNVIDRIRIGAVADFIDVSRLYFPWIFNVADSAISIGICLLLLDMLRQDGLE
                     RARKATAPNEGDAA"
     gene            888..1442
                     /locus_tag="VHN39_09255"
     CDS             888..1442
                     /locus_tag="VHN39_09255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3035 domain-containing protein"
                     /protein_id="HEX2816571.1"
                     /translation="MSVNRVIVATALIAATGLAGCVSTRNALGLTKVTPDEFRVVTKA
                     PLVVPPDFALRPPAPGKPRPQELQPESAARTALLGTREGETRSDGEKLLVAKAGADKA
                     DPLIRYVVDDEFGDVAHKEKSFADKVMFWRADKSAPKPLAAGSDTAAPIDAAAEADRI
                     SKLTGGKTVIIAREGEHKIKLPGL"
BASE COUNT          241 a          561 c          502 g          243 t
ORIGIN      
        1 cgctgacgcc gagctgatgg ccgccttcga gggcctcgac gccgccgagg tgttccgcac
       61 cagccagggc cgcctcatcg ccggcgacgg ccccgccgcg gccttccggt tgccagaaac
      121 acccggcgtc gcggtcgagc cgctacgagc cgagggcctt aaatgcgccc gatcccggcg
      181 catcctgccc gaggtcggct ccgaccatcg ctatccggac ctctccctgc gcgacgccga
      241 cgccgtggcc gcctgggacg caacgcacga gaaggagccc gcatgaccgg cgtcaccagg
      301 ctcggctgga cggccttcgt catcgccatc gccatcatcg tcgccgacca ggccgtgaag
      361 acctgggtgc tcgacgtcct gcgcctgcaa gagggccaat cgatcgcggt gtttggcccg
      421 ctacacctga ccggcgtctg gaacccgggc gtcagcttcg gcttcctgca ggcccagcac
      481 gatctggtcc gctggctcct ggtgaccttc tcgatcgtcg tggcgatctt cctggccgcc
      541 tgggtgcgca agagcgaccg gccgctgttc gccgtggccg tgggcctcct gatgggcggc
      601 gccatcggca acgtcatcga ccgcatccgc atcggggccg tggccgactt catcgacgtc
      661 agccggctct acttcccgtg gatcttcaac gtcgccgatt cggcgatcag catcggcatc
      721 tgcctgctgc tgctggacat gctgcgccag gacggcctgg agcgggcgcg caaggccact
      781 gcgcccaatg agggggatgc ggcctgatgc gccgttggcg cgggcttgcg tttgcgctat
      841 ccactcatcc ttcgtggccg ggggcggtcc tgggagttcc gaatttcatg agcgtcaatc
      901 gagtcatcgt cgcgacggcc ctgatcgcgg cgaccggtct cgccggctgt gtgtcgacgc
      961 gcaatgcgct cggcctcacc aaggtgaccc ccgacgaatt ccgcgtggtc accaaggccc
     1021 cgctggtggt gccgcccgat ttcgccctgc gcccgccggc gccgggcaaa ccccgtccgc
     1081 aggaactgca gccagaaagc gccgcgcgca ccgcccttct gggcacgcgc gagggcgaaa
     1141 cccgctccga cggcgagaag ctcctggtcg ccaaggccgg cgccgacaag gccgatccgc
     1201 tgatccgcta tgtggtcgac gacgagttcg gcgacgtggc tcacaaggaa aagagcttcg
     1261 ccgacaaggt gatgttctgg cgcgccgaca agagcgcgcc caagccgctg gcggccgggt
     1321 ccgacaccgc agccccgatc gacgccgcgg ccgaagccga ccgcatctcc aagctgaccg
     1381 gcggcaagac cgtgatcatc gcccgcgaag gcgagcacaa gatcaagctg cccggtctct
     1441 aagaatcatc cctcctcttt ggaggaggga aaagccgcga agcggcctag gtgggggatt
     1501 cgcgttcagg cgtcagactc tctgcttggc ccacaaaccc ccacccg
//
LOCUS       DATAJL010000484         5041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58423,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000484 DATAJL010000000
VERSION     DATAJL010000484.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58423"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..102
                     /locus_tag="VHN39_09260"
     CDS             <1..102
                     /locus_tag="VHN39_09260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816572.1"
                     /translation="VAGWIAHAREQLAGGRLIRPASRYVGPMPRVAA"
     gene            complement(111..503)
                     /locus_tag="VHN39_09265"
     CDS             complement(111..503)
                     /locus_tag="VHN39_09265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEX2816573.1"
                     /translation="MTPSEQIDQLIAATTDWRGKTLAGVRKAILEADPEIVEEWKWMG
                     SPVWSRNGIIAVGNAHKEKVKLTFSHGASLPDPDGLFNNGFGGKVWRAIDLFEGDKID
                     EGALKNLIRAAAAYNQSKPKKNRPAAAR"
     gene            complement(548..958)
                     /locus_tag="VHN39_09270"
     CDS             complement(548..958)
                     /locus_tag="VHN39_09270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX2816574.1"
                     /translation="MSNTATETLSVVVEREISYPPEKIWRALTQPHLIEEWLMKNDFQ
                     PVMDHRFSFRGDWGSVDCQVLAIEPNKTLAYTWGAMGLGSVVTWTLTPTSAGTHLRME
                     QAGFRPDQQQAYQGAKYGWPRFFANLEQVLARAD"
     gene            complement(955..1278)
                     /locus_tag="VHN39_09275"
     CDS             complement(955..1278)
                     /locus_tag="VHN39_09275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015316758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX2816575.1"
                     /translation="MPNAHDVLFRTLADPTRRALFERLCREGEQTVGALTARAGVSQP
                     AVSKHLAVLKQAGLVRDRPEGRQTHYSAQLAALAPLTNWTGQMTGFWQGRFDDLEDLI
                     KRMDQ"
     gene            1444..2385
                     /locus_tag="VHN39_09280"
     CDS             1444..2385
                     /locus_tag="VHN39_09280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2816576.1"
                     /translation="MNAVHGLAPAETAALTRRVTLYSVTVAAVLVSIKIAAWLASGSV
                     ALLASTADSGLDLVASLITFFAVRYAAAPPDAEHRFGHGKAEAFASLMQGGLVFASAA
                     LIGREAIGDLMAPRPIQDSGWALVVMAISIVLTGLLIAAQNRVLKTTASVAVSGDRAH
                     YAMDLASNVIALAGIGLAAWLGIKSLDAIAALAIAAVLLWGAVGVFREASGQLMDHEL
                     PNEARAKIVALMTEDRRLTDVHQLRTRASGPYVHIQMHVDLDPELTLEAAHQVIVAAE
                     NRVLDAFPQADIIIHADPRGRAEPHGGAFAEVHPSKA"
     gene            2471..3157
                     /locus_tag="VHN39_09285"
     CDS             2471..3157
                     /locus_tag="VHN39_09285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519127.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2816577.1"
                     /translation="MSLERTLHHFPLDPASRQVRLVLGEKRLAFTEVQVRYWERPKEL
                     TAMNPSGMIPVLVETDGDEQLVLCEARAILDHLEETVPEPALLGREPAERAEARRLLA
                     WFDRKFEYEAGGYILHEKMEKRLLGMGAPDLNNLRQGRDGLRTHMFYIDKLLQEREWL
                     AGRRLSLADFAAAAHLSVIDYCGDMPWPDFPAVKTWYMKLKSRPCFRPLLADRWPGLT
                     PARHYDDLDF"
     gene            3138..4271
                     /gene="queG"
                     /locus_tag="VHN39_09290"
     CDS             3138..4271
                     /gene="queG"
                     /locus_tag="VHN39_09290"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0052693 - epoxyqueuosine reductase
                     activity [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEX2816578.1"
                     /translation="MTTSTSDTAEDLIRAKALALGFDACHFTPIPDAWPASAHLAEFI
                     DAGRHGELGWIADTAERRAHPRAMWAEARSAIVLGMNYGPDHDPLAVLGEPTRGAISV
                     YAQGDDYHELIKGRLKALARWLQVRFGGELKVFVDTAPLLEKPLAEQAGMGWQGKHTN
                     LVSREFGSWLFLGSILTTLELAADAPETTTCGTCQACLDICPTRAFPAPYQLDARRCI
                     SYLTIELKGPIPREFREALGNRIYGCDDCLAVCPWNKFAAIAAEQKLQAREALRAPSL
                     ADLARLDDVQFRVLFAKSPVKRIGRDRFVRNVLYAIGNSGQPQLAAEAQRLLDDPSPL
                     VRGATVWALSRLMEGAVFDALRGKHLRVETDVDVLAEWSSPSI"
     gene            complement(4282..>5041)
                     /locus_tag="VHN39_09295"
     CDS             complement(4282..>5041)
                     /locus_tag="VHN39_09295"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024914.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2816579.1"
                     /translation="SCAVATPPTANGSSSGSRSTDQLLPVFGAHNPEVRAFQNCVFDL
                     PPFPETERGPRVFYGAIDRGPFAVEVARALAPAIEAFPSVEFHVVGDRAVFDALPTAR
                     KRFDPLLPYARYLAAMAECSVSLSPIMAAPMVETKSDAKYLDAARAGVLTLASPVLYD
                     RVIRHGENGLLARSISDWPRLLTFALADAPARQRMSRAAWEDVRGRRMFSQQIAERRD
                     WYRDLLRRREVLNRALVERSLGVAAALAKLRSVG"
BASE COUNT          793 a         1702 c         1698 g          848 t
ORIGIN      
        1 gtcgccggct ggatcgccca cgcccgcgag cagctggccg gcggccggct gatccggccg
       61 gcgtcgcggt atgtggggcc gatgccgcgg gtggcggcct aggtctccgg tcagcgcgcg
      121 gccgcgggcc ggttcttctt cggtttgctc tgattgtacg cggcggcggc gcggatgaga
      181 tttttcagag cgccctcatc gatcttgtca ccctcgaaaa gatcgatcgc gcgccacacc
      241 ttgccgccga agccgttgtt gaagagcccg tcaggatccg ggaggctcgc gccgtgggaa
      301 aaggtcagct tcaccttctc cttgtgggcg ttgccgaccg cgatgattcc gttgcgggac
      361 cagaccgggc ttcccatcca cttccattcc tcgacgatct ccggatcggc ctcaaggatg
      421 gccttgcgga cgccggcgag ggttttgccg cgccagtcgg tggtggccgc gatcagctga
      481 tcaatctgtt ccgatggagt catgggatcc ctatgcctcg aattccgcgt ccaggttcat
      541 tcggcgatca atcggcccgc gccaagacct gctccaggtt cgcaaagaaa cgcggccacc
      601 cgtatttggc gccctggtag gcctgctgct gatccggccg gaagccggcc tgttccatgc
      661 gcaggtgggt ccccgcgctc gtcggggtga gagtccaggt gacgacactc ccgagaccca
      721 tggcgcccca agtgtaggcc agcgtcttgt tcggctcgat agccaggacc tggcagtcga
      781 ccgaacccca gtctccgcga aaactgaagc ggtgatccat gacaggctgg aagtcgttct
      841 tcatgagcca ttcctcgatc aggtgtggct gggtgagcgc tcgccagatt ttttccggcg
      901 gataggaaat ctcccgttcg acaacgacgg agagcgtttc ggtcgcggta ttgctcattg
      961 gtccatcctc ttgattaggt cttcgaggtc gtcgaaccgg ccttgccaga agccggtcat
     1021 ctggcctgtc cagttggtca gcggggcaag cgcggcgagt tgcgcgctat agtgcgtctg
     1081 gcggccttcg gggcggtcgc gcaccagccc ggcctgcttc aggaccgcga gatgcttcga
     1141 gaccgccggt tgcgagaccc cggcccgagc cgtcagggcc ccgaccgtct gctcgccttc
     1201 gcggcacaga cgttcgaaga gagcccgccg ggtcggatcg gcgagcgttc tgaagagcac
     1261 atcgtgagcg ttcggcatct gggatcgata accttcgggc tatggattga cgtataaccg
     1321 ccgagatatg tgtgagtcaa ttaggaacac ccttccccca cgaggggagc agcgcagtct
     1381 tcggcgatgc attgagagtc gttcgcgctg gcttgggcgc ggagcggcgc taggttccgg
     1441 cgcatgaacg ccgtccatgg cctcgccccc gccgaaaccg ccgccctcac ccggcgggtg
     1501 acgctatatt cggtgacggt ggccgcggtg ctggtgtcga tcaagatcgc cgcctggctg
     1561 gcgtcgggct cggtggcgct gctggcgtcc acggcggact ccgggctcga cctggtggcc
     1621 tccctgatca ccttcttcgc cgtgcgctac gccgccgccc cgccggacgc cgagcaccgc
     1681 ttcggtcacg gcaaggcgga ggctttcgcg agcctgatgc agggcggcct ggtctttgcc
     1741 tccgccgccc tgatcgggcg cgaggcgatc ggcgacctga tggcccccag gccgatccag
     1801 gacagcggct gggcgctggt ggtcatggcg atctccatcg tgctcaccgg cctcctgatc
     1861 gccgcccaga accgcgtgct gaagaccacg gcctcggtgg cggtgtcggg cgaccgggcc
     1921 cactacgcca tggacctggc gtccaatgtc atcgcgctgg ccggcatcgg cctggccgcc
     1981 tggctgggga tcaagagcct cgacgccatc gccgcgctgg ccatagccgc ggtgctgctc
     2041 tggggcgcag tcggtgtgtt ccgcgaagcc tcgggacagc tgatggacca cgaactgccc
     2101 aacgaggccc gggcgaagat cgtcgccctg atgaccgagg accgccggct gaccgacgtc
     2161 catcaactgc gcacgcgggc gtccgggccc tacgtccaca tccagatgca cgtcgacctc
     2221 gatccggagc tgacgctcga ggcggcgcat caggtgatcg tcgcggcgga gaaccgggtg
     2281 ctcgacgcct tcccgcaggc cgacatcatc atccacgccg atccgcgcgg gcgtgctgag
     2341 ccccatggcg gggccttcgc ggaggttcat ccgtcgaaag cctgaccttc ggggcgtagt
     2401 aaacgacccc ttaacgggtg cggcgtccat tgaggccaac gattcgaccc cccttatgcg
     2461 ttagccggac atgagcctcg aacgcaccct gcaccacttc ccgctggacc ccgcctcgcg
     2521 ccaggtgcgg ctggtgctgg gcgaaaagcg cctggccttc accgaggtgc aggtccgcta
     2581 ctgggagcgg ccgaaggagc tgacggcgat gaacccctcg gggatgatcc cggtgctggt
     2641 ggagaccgac ggcgacgagc agctggtgct ctgcgaggcc cgcgcgatcc tcgaccacct
     2701 ggaggagacc gttcccgagc ccgctctcct gggccgggag cccgcggaac gggctgaggc
     2761 caggcgcctg ctcgcctggt tcgaccgcaa gttcgaatac gaggccggtg gctatatcct
     2821 gcacgagaag atggaaaagc ggctgctggg catgggggcg ccggacctca acaacctgcg
     2881 ccagggccgc gacggcctgc ggacccacat gttctacatc gacaagctgt tgcaggagcg
     2941 cgagtggctg gcggggcggc ggctgtcgct ggccgacttc gcggcggcgg cgcacctgtc
     3001 ggtgatcgac tattgcggcg acatgccctg gccggacttc cccgcggtga agacctggta
     3061 catgaagctg aaatcccggc cgtgtttccg gccgctgctg gcggaccgct ggccgggtct
     3121 gacgcccgcc aggcattatg acgacctcga cttctgacac cgccgaagac ctgatccgcg
     3181 ccaaagcctt ggccctcggc ttcgacgcct gccacttcac ccccatccct gacgcctggc
     3241 ccgcgagcgc gcacctggcc gagttcatcg acgccgggcg gcatggggag ctgggctgga
     3301 tcgccgacac cgcggagcga cgggcccatc cccgcgccat gtgggccgag gcccgctcgg
     3361 ccatcgtgct cggaatgaac tatgggccgg accatgaccc gctggccgtg ctgggcgaac
     3421 cgacccgggg cgcgatcagc gtctacgccc agggcgacga ctatcacgag ctgatcaagg
     3481 ggcgactgaa agcgctggcg cggtggctgc aagtccggtt cggcggcgag ctgaaggtgt
     3541 tcgtggacac cgcgcccctc ctggaaaagc cgctggcgga acaggcgggg atgggctggc
     3601 agggcaagca caccaacctg gtcagccgcg aattcggctc ctggctgttc ctgggctcga
     3661 tcttgacgac gctggagctg gccgccgacg cacccgagac caccacctgc gggacctgcc
     3721 aggcctgcct ggacatctgc ccgaccaggg ccttcccagc gccctaccaa ctcgatgcgc
     3781 ggcgctgcat ctcctacctg accatcgagc tcaaggggcc gatcccgcgg gagttccgcg
     3841 aggccctggg caaccggatc tacggctgcg acgactgcct ggccgtctgc ccctggaaca
     3901 agttcgcggc gatcgccgcc gagcagaagc tgcaggcccg cgaggccctc cgcgcgccgt
     3961 ccctcgccga tcttgcgcgg ctggacgacg tccaattccg cgttctcttc gccaagagcc
     4021 cggtcaagcg gatcggccgc gaccggttcg tgcgcaatgt gctctacgcc atcggcaatt
     4081 ccggccagcc gcagctggcg gcggaggcgc agcggttgct ggacgaccct tcgcctttgg
     4141 tgcgcggagc cacggtctgg gcgttgtcgc ggttgatgga gggggccgtc ttcgacgcat
     4201 tgcgagggaa acacctccgt gtcgaaaccg acgtcgatgt cctcgccgag tggtccagcc
     4261 cctcgatctg acaatccctg gtcaacccac agatctcagc ttggccagcg ccgccgccac
     4321 gccaagcgat cgttcgacaa gcgcccggtt cagcacttcc cgccggcgga gcaaatcccg
     4381 ataccagtca cgccgctcag cgatttgctg agagaacatt cggcgtccgc gcacgtcctc
     4441 ccaggcggcg cgggacatgc gctgacgcgc cggcgcatca gcgagggcga acgtcaggag
     4501 ccgtggccag tcgctgatcg atcgggcgag gagaccgttc tcgccatgtc ggatcacgcg
     4561 gtcgtagagg acgggagatg caagggtcag gacgccggcg cgggcggcat ccaggtactt
     4621 ggcgtcgctc ttggtttcga ccatcggcgc cgccatgatc ggcgacagcg agacgctgca
     4681 ttccgccatc gccgccaggt agcgggcgta aggcagtagt gggtcgaacc gcttccgcgc
     4741 ggtcggcagg gcgtcgaaca ccgctcggtc accgaccacg tggaattcga cagacgggaa
     4801 cgcctcgatc gctggggcca gggctctggc cacctcgaca gcgaacgggc cgcggtcgat
     4861 cgcgccgtag aacacccttg gccctcgctc cgtttcggga aacgggggca ggtcgaacac
     4921 gcagttttga aaggccctga cctccggatt gtgcgcgcca aagacgggca gaagctggtc
     4981 cgtcgagcgc gacccggaac tgctcccatt cgccgtcggt ggcgtggcga ccgcgcagga
     5041 t
//
LOCUS       DATAJL010000485         3104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_82360,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000485 DATAJL010000000
VERSION     DATAJL010000485.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3104
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82360"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..214)
                     /locus_tag="VHN39_09300"
     CDS             complement(<1..214)
                     /locus_tag="VHN39_09300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEX2816580.1"
                     /translation="MITRRLTTAGLALAVLLSPAPALAAETQVAVAANFTDPANQIAA
                     AFKAQTGHTATLSFGSSGQFYAQMAHG"
     gene            complement(235..765)
                     /locus_tag="VHN39_09305"
     CDS             complement(235..765)
                     /locus_tag="VHN39_09305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding oxidoreductase"
                     /protein_id="HEX2816581.1"
                     /translation="MSYITGMMTRLISFAFALLVSALPAGTAAAQTLTIGRGSRTETV
                     SPAQFAAMPHLRAQVTQHDQSHDFEGVALASLVAKVGADVSHPLQGRDLSAVIRVTAA
                     DGYQVVLALSEVDPATRKGAVLLADRDGGKPLDAANGPYRLVVSDDIRPARSARQVER
                     IEVLDLATSAKRPAAK"
     gene            complement(1012..2529)
                     /locus_tag="VHN39_09310"
     CDS             complement(1012..2529)
                     /locus_tag="VHN39_09310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEX2816582.1"
                     /translation="MRMIAGRRIRLFGGVAVASLVLASGAIAAPPATKSAATPNCFAT
                     FSSWFDSSPADCPLSADGVTLYGVIDVGGGYETHGAPFNGDAKTGVSELIAKGNSGAR
                     WQGVPSGLGQSNIGVKIKEQIVPNWFFIGDVNAGFDPYSLHFANGPKSFVDNNNVPLA
                     AQSTNTDSARSTGWDNTRAFLGVSNATYGTLTLGRQNALSNELVGQYDPLGGAYAFSL
                     IGNSSTIVAGTGDTETSNYNMSVKYQVSHEGFRAAALAQLGGYAQRNNAQSAYQLDLG
                     GDVSGLSIDAVYAYAKDAVALSNFTSGAPTPDTLKATLANVSAGVVAGKYNWRALTVF
                     GGYEYARLSSPSDLHGATATANGQTLTLNGGYPAVVQANIYVNPKDMQVLWLGGKYRL
                     RPNLDLNAGYYYTWQNNFTNAATKYNTGGSSTKTGVGCGPNLNAAITGSTPQGSNASA
                     CAGNEAVVSAELDWRPVKRVDLYTGVMYSKVTGGFANGFINNNNTAFTSGVRLAF"
     gene            2731..>3104
                     /locus_tag="VHN39_09315"
     CDS             2731..>3104
                     /locus_tag="VHN39_09315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX2816583.1"
                     /translation="MTKAQSDRRAFLQLAAGAALGAAALPPGVAKALALPANRVTGTI
                     RDVEHVVILMQENRSFDHYFGTMRGVRGYGDPRPIDLPSGQPVWKQPAKDAPTFKGLT
                     WPTCAERLQAAGVSWRVYQEFN"
BASE COUNT          511 a          988 c         1070 g          535 t
ORIGIN      
        1 ctccgtgggc catctgggcg tagaactgcc cggaagagcc gaagctcagc gtcgcggtgt
       61 gaccggtctg cgccttgaac gcagccgcaa tttgattggc cggatcggtg aagttggccg
      121 ccaccgccac ctgcgtctcc gcggccagag ccggggccgg cgataacagg acggcgagcg
      181 ccagcccggc ggtcgtcagg cggcgggtga tcatgggcag gctccggttg ggcgtcattt
      241 ggcggcgggc cgcttcgccg aggtcgcaag atcgagcacc tcgatgcgct cgacctggcg
      301 ggccgagcgc gcgggccgga tgtcgtcgct gaccaccagc cggtaggggc cgttggccgc
      361 gtccaacggc ttgccgccat cacggtcggc gagcagcacc gcgcccttgc gcgtcgccgg
      421 gtcgacctcc gacagggcca ggaccacctg atagccgtcg gccgcggtga cccggatcac
      481 ggcgctcagg tcgcggccct gcaacgggtg cgaaacgtcg gcgccgacct tggccaccag
      541 gctcgccagc gccacgccct cgaagtcgtg gctctggtcg tgctgggtca cctgggcgcg
      601 caggtgcggc atggccgcga actgcgccgg cgagaccgtc tccgtccggc tcccccggcc
      661 gatcgtgagc gtctgcgccg ccgccgtccc ggccgggagc gcagacacca ggagggcgaa
      721 agcaaaggag atcaggcggg tcatcatgcc cgttatgtag ctcaactaca tagcgctagg
      781 ccagacctgc atcggaaggc gaactgggag cgcagcgaga tggcgtgata ctgctggccc
      841 acctccgcgc cgcccgaacg atttcggccg cacccgcgcc tccccggcgc tgcgcccact
      901 tcgggccccc acccgagagg cgtgagcgtt agactgtcag tctcgacaaa gaccgagagg
      961 aggcagtcaa ccagatttcg cccgacaatg ccttcggcgc cgaagggttg actagaaggc
     1021 gagacgcacg ccgctggtga acgcagtgtt gttgttattg atgaagccgt tggcgaagcc
     1081 acccgtgacc ttgctgtaca tcacgccggt gtacagatcg acgcgcttga cgggacgcca
     1141 gtccaactcc gcggagacaa cggcttcgtt gccggcgcag gcgctggcgt tcgatccctg
     1201 aggcgtggaa ccggtgatcg cggcattcag gtttgggccg cagccgacac ctgtcttcgt
     1261 gctgctgccg ccggtgttgt acttggtcgc agcgttggtg aagttgttct gccaagtgta
     1321 gtaatagccc gcgttgaggt cgagattggg ccgaagacgg tatttgccgc cgagccagag
     1381 gacctgcatg tccttggggt tcacatagat gttggcctga acgacggcgg gatagccacc
     1441 gttgagggtc agggtttggc cattcgccgt cgccgttgcg ccgtgcagat cgctcggcga
     1501 actcaggcga gcatattcgt agccaccgaa tacggtgagc gcgcgccaat tgtatttccc
     1561 ggcgacgacg ccggcgctga cgttggcgag cgtcgccttg agcgtgtcgg gcgtcggcgc
     1621 gcccgaggtg aagttgctga gcgccacggc gtccttggcg taggcgtaga ccgcatcaat
     1681 cgagaggccg ctgacgtcgc cgccgagatc cagctggtag gcgctctggg cattgttacg
     1741 ttgggcatag ccgccgagct gggccagcgc agcggcacgg aagccctcgt gagaaacctg
     1801 atacttgacc gacatgttgt agttcgacgt ctcggtgtcg ccggtgccgg cgacgatcgt
     1861 cgaagagttg ccgatcagcg agaaggcgta ggccccgccg agcggatcgt attggcccac
     1921 gagttcgttg ctgagggcgt tttgccggcc aagggtcagg gttccgtagg tggcgttgct
     1981 gacgccaagg aaggcgcgcg tgttgtccca gcccgtggag cgggccgagt cggtgttggt
     2041 gctctgggcc gcgaggggaa cgttgttgtt gtcgacgaac gacttcggac cgttggcgaa
     2101 atgcagcgaa taggggtcga agccggcgtt gacgtcgccg atgaagaacc agttcgggac
     2161 gatctgctcc ttgatcttga cgccgatgtt cgactggcca aggccgctcg gcacgccctg
     2221 ccagcgcgcg ccgctgttgc ccttggcgat caactcgctg acgcccgtct tggcgtctcc
     2281 gttgaatggc gccccgtggg tctcgtagcc gccgcccacg tcaatcacgc cgtagagggt
     2341 tacgccatca gccgacagcg ggcagtctgc gggactcgaa tcgaaccagc tcgagaaggt
     2401 cgcaaagcag ttgggcgtgg ctgcggactt ggtcgctgga ggtgcggcaa tcgcacccga
     2461 cgccagcaca aggcttgcga cggcaacacc gccgaagagg cggattcgcc gtcctgcgat
     2521 catacgcatt cttgtcactc ccatccctgg tatccccgtt gggccgtcgc cctggcacgc
     2581 agcgttatgt agcgcgcctg catatcgcta tgccagtgcg tgatgtgaac tcctactgga
     2641 ttactaggga attgccgtcc caagtttttc ggcagggacg ttcagttcgg ctatcctgcc
     2701 acggacgacg caaacccgga cgggagcaac atgaccaagg cgcagagcga ccgcagggct
     2761 ttcctgcagc tggcggccgg ggcggccctg ggggccgcgg ccctgccgcc cggcgtcgcc
     2821 aaggcgctgg cgctcccggc gaaccgggtc accggcacca tcagggacgt cgagcacgtg
     2881 gtgatcctga tgcaggagaa ccgctccttc gaccactatt tcgggacgat gcgcggcgtc
     2941 cgcggctacg gcgatccccg ccccatcgat ctgccgagcg gccagccggt ctggaaacag
     3001 ccggccaagg acgcgccgac gttcaagggc ctcacctggc ccacctgcgc cgagcggctg
     3061 caggcggcgg gcgtgtcctg gcgcgtctat caggagttca acaa
//
LOCUS       DATAJL010000486         2162 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21286,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000486 DATAJL010000000
VERSION     DATAJL010000486.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21286"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VHN39_09320"
     CDS             <1..311
                     /locus_tag="VHN39_09320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816584.1"
                     /translation="SKDADADKTFLRDTLGFANVDVGHGWLIFALPPAEVAVHPSDDN
                     DKHELFLMCDDLEGTVKALSGKGVVCEPFSTQGWGRMTRLRLPGGGGLGLYEPRHARP
                     "
     gene            complement(317..799)
                     /locus_tag="VHN39_09325"
     CDS             complement(317..799)
                     /locus_tag="VHN39_09325"
                     /inference="COORDINATES: protein motif:HMM:NF023338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3429 domain-containing protein"
                     /protein_id="HEX2816585.1"
                     /translation="MVTDGPHVSVRYDAIPPALWAIALATLAPFPLAAIAYGWGPPDV
                     ARPALTVILNWSGCVLAFLGGVRWGLESGRPKPRPARLVISVLSPVVAWVILFSRHRL
                     PDGWIIGGCIGAFLVQWLFDHQAPDVPARYPRLSTALTAAACVSLAVCLDQAMKTGHV
                     "
     gene            complement(800..1594)
                     /locus_tag="VHN39_09330"
     CDS             complement(800..1594)
                     /locus_tag="VHN39_09330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02186 family protein"
                     /protein_id="HEX2816586.1"
                     /translation="MAAATPPPIAHPAMAMAPAGAPVVSAALTETNVRVNSDFRGDQI
                     VLYGAVFDPQSRPSDVVVIVRGPEQPVRIARKSRIAGLWINSRPVVFQGAPGFYIAAS
                     TRPLDDIARFGVLRRLEAGVDHLAINAPAEQRTETRYGVRDVVVSRLGADYLDWRRAV
                     VRLKEAQHLYDVADHGVRFVDKGLFRAEIALPAEAPIGQYQVRILLFQNGQPVSEKDR
                     VLTVEKVGVERGLYLWAHQRPWSYGFAAMAFALAAGWAASSAFRRD"
     gene            complement(1594..>2162)
                     /locus_tag="VHN39_09335"
     CDS             complement(1594..>2162)
                     /locus_tag="VHN39_09335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX2816587.1"
                     /translation="LIFLGIIGGLMFWESLGAILRRRNNAPAPPRRDRRPPWLYGLPL
                     KLRFPRSRLYISVIPPIALGAFVGVLSAIMGVGGGFVLVPAMVYVLRMPANVVVGTSL
                     FQIIITTALTGVLQAGRNQTVDILLATLLLVGGVLGAQLGARASSRFRAEELRALLAL
                     IVLLVGLRMGLGLFFTPHDPFVLMSGNG"
BASE COUNT          389 a          732 c          763 g          278 t
ORIGIN      
        1 attcgaagga cgcggacgcg gacaaaacct tcctgaggga caccctggga tttgccaatg
       61 tcgacgtcgg ccacggctgg ctgatcttcg ccctgccgcc ggcggaggtt gctgttcatc
      121 cctcggacga caacgacaag cacgagctct tcctgatgtg cgacgacctt gaggggactg
      181 tgaaagcgct cagcggcaaa ggcgtcgtct gtgagccctt cagcacccag ggctggggcc
      241 gaatgactcg cctgcgtctg ccgggcggcg gcggcctggg cctctacgag ccacggcacg
      301 cccggccctg agccgcctag acgtggccgg tcttcatggc ctggtcgagg cagacggcca
      361 gcgagacgca ggccgccgcg gtcagggcgg tggagagtct cgggtagcgc gccgggacgt
      421 ccggcgcctg gtggtcgaac agccactgca ccaggaaggc gccgatgcag ccgccgatga
      481 tccagccatc gggcaggcgg tggcgcgaga acaggatcac ccaggcgact acgggcgaca
      541 ggaccgagat caccagtcgc gccggccgcg gttttggccg gccgctttca aggccccagc
      601 gcacaccgcc aaggaacgcc agcacgcagc ccgaccagtt gaggatcacg gtcagcgccg
      661 gccgcgccac gtcgggcggt ccccaaccgt aggcgatggc ggcgagcggg aacggggcga
      721 gggttgccag cgcgatggcc cagagcgccg gcgggatggc gtcgtagcgg accgaaacat
      781 gagggccgtc cgtcaccatt cagtctctcc ggaaggctga cgaggccgcc caaccggccg
      841 ccagcgcgaa ggccatcgcc gcgaagccgt aggaccatgg cctttgatgg gcccaaaggt
      901 aaagcccgcg ctcgacgccc actttttcga cggtcagcac gcggtccttt tccgacaccg
      961 gctgcccgtt ctggaagagc aggatgcgca cctgatactg gccgatcggc gcctcggccg
     1021 gcagcgcgat ctccgcgcgg aacaggccct tgtcgacgaa acgcacgcca tgatcggcga
     1081 cgtcgtagag gtgttgggcc tccttcaggc gcaccaccgc gcggcgccag tcgaggtagt
     1141 cggcgcccag ccggctcacc accacgtcgc gcacgccata gcgggtctcg gtccgctgtt
     1201 cggccggcgc gttgatcgcc aggtggtcga cgccggcctc cagcctgcgc agcaccccga
     1261 agcgggcgat gtcgtcgagc gggcgggtgg aggcggcgat gtagaagccg ggcgctccct
     1321 ggaagactac cggacgactg ttgatccaaa ggccagcgat cctgctcttg cgcgcgattc
     1381 gcaccggctg ttccggaccg cgcacgatga ccaccacgtc gctgggccgg gactgcggat
     1441 cgaagacggc gccgtagagc acgatctggt cgccgcggaa gtcggagttc acccgcacat
     1501 tcgtctcggt gagcgccgcg gaaacgaccg gcgcgccggc gggcgccata gccatggcgg
     1561 gatgcgcgat cggaggcgga gtggccgcgg ccatcagccg ttccccgaca tcagcacgaa
     1621 gggatcgtgc ggcgtgaaga agaggccgag ccccatcctg aggccgacca gcaggacgat
     1681 cagcgccagg agcgcgcgca gttcctcggc ccggaaccgc gaggaggcgc gcgcgccgag
     1741 ctgggcgccc agcacgccgc ccaccagcag cagggtcgcc agcaggatgt cgacggtctg
     1801 gttgcggccg gcctgcaaca cgccggtgag cgccgtggtg atgatgatct ggaagaggct
     1861 ggtgcccacc acgacattgg ccggcatccg cagcacatag accatcgccg gcaccagcac
     1921 gaagccgccg cctacgccca tgatcgccga gagcacgccc acgaaagcgc caagcgcgat
     1981 cggcgggatg acgctgatat agaggcgcga acgcgggaaa cgcagcttca gcggcaggcc
     2041 gtagagccag ggcggacggc ggtcacggcg gggcggcgca ggcgcgttgt tgcgccgtcg
     2101 caggatcgcg cccagcgact cccagaacat cagcccgccg atgataccca gaaagatcag
     2161 at
//
LOCUS       DATAJL010000487         3565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34457,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000487 DATAJL010000000
VERSION     DATAJL010000487.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3565
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34457"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..111
                     /locus_tag="VHN39_09340"
     CDS             <1..111
                     /locus_tag="VHN39_09340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEX2816588.1"
                     /translation="VYIRADKHVRYGDFMSVMNTLQGNGFYQVALINEEL"
     gene            258..422
                     /locus_tag="VHN39_09345"
     CDS             258..422
                     /locus_tag="VHN39_09345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816589.1"
                     /translation="MGSSTVRGRYRVEGDMLVLEWRGGRHAERCGMVKPEVVAMQRLR
                     REAEEHPVAA"
     gene            689..2188
                     /locus_tag="VHN39_09350"
     CDS             689..2188
                     /locus_tag="VHN39_09350"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2816590.1"
                     /translation="MNDVAFQAQPAGLKTEHFDVLIVGAGISGVGGAYHLTHQRPGTS
                     FVVLEALESFGGTWLTHKYPGIRSDSDLYTFGYRFKPWVGAPIASAAEIRKYMDEVIA
                     ENDLAPHIRYGHTIKAASWSSADNLWTVEAVRAHTGETARFTTNFLWMCQGYYRQSEG
                     YTPDWEGLTDFKGRIVHPQTWPDELDLKGKRVVVIGSGATAATLVPAIAADCEHVTVL
                     QRSPTYFIPGRNANELADTLNELDIDPNWTHEIVRRKILHDQAAFTRRAFDEPETVKQ
                     ELLAGVSMFLPQEEVAEHFTPHYRPWRQRIAFVPDGDLFQGLKSGKASMVTDEIDRFV
                     PEGIRLKSGKTLEADVVITATGFNLNVLGDIDFYIDNEPLVFADTVTYRGMMFTGVPN
                     LVWVFGYFRASWTLRADLVADFVCRLLGHMAAHGKKRVTPRLRPQDQDMPLSPWMDPE
                     NFNPGYLMRGMHLLPRRGDKAEWQHSQDYWAEKDEIPKIDLDDAAFDYA"
     gene            complement(2198..3259)
                     /locus_tag="VHN39_09355"
     CDS             complement(2198..3259)
                     /locus_tag="VHN39_09355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX2816591.1"
                     /translation="MNDVAIHKTPVSKTPVTVLTGYLGAGKTTLLNRILSEDHGKRYA
                     VIVNEFGEVGIDNDLIVGADEEVFEMNNGCVCCTVRGDLIRVVSGLMKRKGGFDAIIV
                     ETTGLADPGPVAQTFFVDEDVRAKTQLDSVTTVVDAKHLPLRLADSKEAAEQIAFADQ
                     IILNKTDLVTEAELVEVERMIRRLNPLAPIHRAQRSNVPLDQVLGRGSFDLARIEELE
                     PDFLNPGHGEPGHVHDEDCDHDHHGHDHHGHGHDIEASGIRGISLTARKPLNANRVTA
                     WLNDVLQAQGPDILRAKGILDVAGEDRRLVFQAVHMILEGDFQGPWRDGADRYSRLVF
                     IGRNLDEAKLREGFEACIA"
     gene            complement(3280..>3565)
                     /locus_tag="VHN39_09360"
     CDS             complement(3280..>3565)
                     /locus_tag="VHN39_09360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816592.1"
                     /translation="IMAASWTLKEQVKLGGAGVASTTWADYPILRFSEVPPVEIELLN
                     TRDPRPLGLGEVSQGPVMAAIGNAVAHALSARIRDLPMTRERIAAALLKD"
BASE COUNT          611 a         1181 c         1157 g          616 t
ORIGIN      
        1 gtctacatcc gcgccgacaa gcatgtgcgc tacggcgact tcatgtcggt gatgaacacc
       61 ctgcagggca acggcttcta ccaggtggcc ctgatcaacg aggaactctg aggggcccgg
      121 cgcgtcgccc cgccgcattc accattaatc gtcgcgtaac cccgttcgat taaccatcgg
      181 ggttctggtg gggtcagaac ggccctgaaa aacaagcgcg aggcgcgaga gcgatgtgga
      241 attcggtgca agtctcgatg gggtcgtcga ccgttcgcgg ccgctatcgg gttgaaggcg
      301 acatgctggt gctggaatgg cgcggcgggc gccacgcgga acgctgcggc atggtcaaac
      361 ccgaggtcgt cgccatgcaa cgcctccgcc gcgaggccga ggaacacccg gtcgccgcct
      421 agcgtgctgg atttgaagtt cgcctcattc gaggccacgc gccgagcgaa cttcaaatcc
      481 aatgaagcac gctagaaaac atacacttgc tagtgtcctc atcgattccg aagttcgtcc
      541 ggtcttgccg caaacgcctg cgaacttcgg aatcgggaca ctagccaaat caaggcagtc
      601 ttgatcgcga tcaaggctga tcggggccag tgctgcatgt tccgatcgcg cgggcttttc
      661 cgcgcggtag cgccgccggt cggaccccat gaacgatgtc gcctttcagg cccagcccgc
      721 cgggctgaag accgaacact tcgatgtcct gatcgtgggc gcgggcatat ccggcgtcgg
      781 cggcgcctat catctgaccc atcagcggcc cgggaccagc ttcgttgtcc tggaggcgct
      841 tgagagcttc gggggcacct ggctcaccca caaatatccc ggcatccggt ccgacagcga
      901 cctctacacc ttcggctacc gctttaagcc gtgggtcggc gcgccgatcg ccagcgccgc
      961 cgaaatccgc aagtacatgg acgaggtgat cgccgagaac gacctcgccc cgcacatccg
     1021 ctatggccac accatcaagg ccgccagctg gtcgagcgcc gacaacctgt ggaccgtcga
     1081 ggcggtgcgc gcccacaccg gcgagaccgc gcgcttcacc accaacttcc tgtggatgtg
     1141 ccagggatac tatcgccagt ctgagggcta cacgcccgac tgggaggggc tgaccgactt
     1201 caagggccgc atcgtccatc cgcagacctg gcccgacgag ctggacctga agggcaagcg
     1261 ggtggtggtg atcggctcgg gcgccacggc ggccaccctg gtcccggcga tcgccgccga
     1321 ctgcgaacac gtcaccgtcc tgcaacgctc gccgacctat ttcatccccg gtcgcaacgc
     1381 caatgagttg gccgacaccc tgaacgagct cgacatcgac cccaattgga cccacgagat
     1441 cgtgcgccgg aagattctgc acgaccaggc ggccttcacc cgccgcgcct tcgacgagcc
     1501 ggagacggtg aagcaggagc tgctggccgg ggtcagcatg ttcctgccgc aggaggaggt
     1561 ggccgagcat ttcaccccgc actaccggcc ctggcgccag cggatcgcct tcgtgcccga
     1621 tggcgacctg ttccaggggc tgaagtccgg caaggcctcg atggtcaccg acgagattga
     1681 ccgctttgtc cctgagggca ttcgtctgaa gtcgggcaag acgctggagg ccgacgtcgt
     1741 gatcacggcg accggcttca atctcaacgt cctgggcgac atcgacttct acatcgacaa
     1801 cgagcccctg gtgttcgccg acaccgtcac ctaccgcggc atgatgttca ccggcgtgcc
     1861 gaacctcgtc tgggtgttcg gctacttccg cgccagctgg acgctgcgcg ccgacctggt
     1921 cgccgatttc gtctgccggc tgctgggcca catggcggcg cacgggaaga agcgcgtgac
     1981 ccccaggctc cggccgcagg accaggacat gcccctgtcg ccctggatgg atccggagaa
     2041 cttcaatccg ggctatctga tgcgcggcat gcacctcttg ccccgacgcg gcgacaaggc
     2101 ggagtggcag cacagccagg actattgggc ggagaaggac gagattccga agatcgacct
     2161 ggacgacgcg gccttcgact acgcctaggc ccgcgcctca ggcgatacag gcttcaaagc
     2221 cctcgcgcag cttggcttcg tccaggttgc gcccgatgaa caccagccgc gaatagcggt
     2281 cggccccgtc gcgccagggg ccctggaagt ctccctccag gatcatgtgc accgcctgga
     2341 acaccaggcg gcgatcctct ccggccacgt cgagaatgcc cttggcgcgc aggatgtcgg
     2401 ggccctgggc ctgcagcaca tcgttcagcc aagcggtcac gcgattggcg ttgagcggct
     2461 ttctcgccgt cagcgagatc ccgcggatgc cgctcgcctc gatgtcgtga ccgtgcccgt
     2521 ggtgatcgtg gccgtgatgg tcgtggtcgc agtcttcatc atgaacgtgg ccgggttcac
     2581 catgtcccgg gttcaggaag tccggctcca gttcctcgat ccgcgccagg tcgaaggatc
     2641 cgcgacccag aacctggtcc agcggcacgt tcgagcgctg cgcgcggtgg atcggggcca
     2701 gcggattgag ccggcggatc atccgctcca cctccaccag ctcggcctcg gtcaccaggt
     2761 cggtcttgtt gaggatgatc tggtcggcga aggcgatctg ctcggcggcc tccttcgagt
     2821 ccgccagcct aagcggcagg tgcttggcgt cgaccacggt ggtgacgctg tcgagctggg
     2881 tcttggcgcg gacatcctcg tcgacgaaga aggtctgggc taccgggccg gggtcggcca
     2941 ggcccgtggt ctccacgatg atcgcgtcga aacccccctt gcgcttcatc aggccggaga
     3001 ccacgcggat caggtcgccg cgcaccgtgc agcagacgca gccgttgttc atctcgaaga
     3061 cctcttcgtc ggcgccgacg atcaggtcgt tgtcgatgcc gacctcgcca aactcgttga
     3121 cgatcaccgc gtagcgcttg ccgtgatcct cggagaggat gcggttgagc agggtggtct
     3181 tgccggcccc caggtatccg gtgaggacgg tgacgggggt cttggagacg ggggtcttgt
     3241 ggatcgcgac gtcattcatg gcgcgtactt aggggccgct cagtccttga gcaatgccgc
     3301 cgcgatccgc tcgcgggtca tgggcaggtc gcggatgcgg gcggaaagcg cgtgggccac
     3361 ggcgttgccg atggcggcca tcaccgggcc ctggctgacc tcgcccaggc cgagcggccg
     3421 cggatcgcgg gtgttgagga gttcgatctc caccggcggg acctccgaaa agcgaaggat
     3481 cggatagtcc gcccaggtgg tggaggcgac gccggcgccg cccagcttca cctgctcctt
     3541 gagcgtccag ctcgcggcca tgatc
//
LOCUS       DATAJL010000488         2562 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_67790,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000488 DATAJL010000000
VERSION     DATAJL010000488.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67790"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            24..1379
                     /gene="accC"
                     /locus_tag="VHN39_09365"
     CDS             24..1379
                     /gene="accC"
                     /locus_tag="VHN39_09365"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006274187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_function: GO:0004075 - biotin carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEX2816593.1"
                     /translation="MFDKILIANRGEIALRVHRACKEMGISTVAVHSEADSGAMWVRL
                     ADESVCIGPPAAAKSYLNIPSIIAAAEITGAQAIHPGYGFLSENARFAEIVGAHGFTF
                     IGPKPEHIKMMGDKITAKQAVKAVGIPVVPGSDGAVTTEEEAFAAAKAIGFPVLIKAA
                     AGGGGRGMKVAQTQDDLYEAVSTARSEAKAAFGDDAVYMERYLQTPRHIEVQVIADSF
                     GNVCHLGERDCSLQRRHQKVLEEAPSPAIDAETRAKIGKVCVDAIKAIGYLGVGTIEF
                     LYENGEFFFIEMNTRLQVEHPVTEAITGIDLVREQIRIAAGLPLSFAQKDVVFEGHAI
                     ECRINAENPKTFAPSPGLVTDYHAPGGLGVRMDSALYAGYTIPPYYDSLIGKLIVHGR
                     DRDECIARLNRCLGEVVVAGIDTNIPLFQELIQQSDIQSGNYNIHWLENWMKAQALAG
                     E"
     gene            1587..2234
                     /gene="aat"
                     /locus_tag="VHN39_09370"
     CDS             1587..2234
                     /gene="aat"
                     /locus_tag="VHN39_09370"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEX2816594.1"
                     /translation="MAQFDARDLLSCYARGVFPMADAREDERVFLIDPERRGVIPLDA
                     FHITHRLARTVRGEPFEIRTDTAFRAVVQACAETGPGRTETWINHPIEDLYVGLHEQG
                     FAHTVECWQGGELVGGLYGVSLQGAFFGESMFSRRRDASKVALVHLVARLIAGGYRLL
                     DAQFMTEHLTQFGAQEISRLDYHRRLALAISAEAEFQRAGAMGGAAALQVISQAS"
     gene            complement(2174..>2562)
                     /locus_tag="VHN39_09375"
     CDS             complement(2174..>2562)
                     /locus_tag="VHN39_09375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2155 domain-containing protein"
                     /protein_id="HEX2816595.1"
                     /translation="ATDAKPAGVPVRRARYDVAVIEALDKVTAESLRFEAAVGRPIRY
                     KSLVFTVKACERSAPEEAIDDSIAYMTVDSQPRPAPGRPALAPRQTFKGWMYASSPGL
                     HPLEHPVYDAWLITCRAAAPPIAPAR"
BASE COUNT          431 a          866 c          841 g          424 t
ORIGIN      
        1 gctcgcggtc atcggctaag cctatgttcg acaagatcct catcgccaac cgtggcgaga
       61 tcgcccttcg tgttcaccgg gcgtgcaagg agatgggcat ctccaccgtc gccgtgcact
      121 ccgaagctga ctcaggcgcc atgtgggtgc ggctcgccga cgaaagcgtc tgcatcggcc
      181 cgccggccgc ggccaagagc tacctgaaca tcccctccat catcgccgcc gcggagatca
      241 ccggggctca ggcgatccat ccaggctatg gatttctttc ggaaaatgcc cgtttcgccg
      301 agattgtcgg cgcccacggc ttcaccttca tcgggcccaa gcctgagcac atcaagatga
      361 tgggcgacaa gatcaccgcc aagcaggcgg ttaaggccgt tggcatcccg gtggtgcccg
      421 gctccgacgg cgcggtgacc accgaagagg aagccttcgc ggccgcgaag gcgatcggct
      481 tccccgtcct gattaaggcc gcggcgggtg gcggcggacg cggcatgaag gtcgcccaga
      541 cccaggacga cctctacgag gcggtctcca cggcgcggtc cgaggccaag gcggcgttcg
      601 gggacgacgc cgtctacatg gagcgctacc tccagacgcc gcggcacatt gaggtgcagg
      661 tgatcgccga cagcttcggc aacgtctgcc acctcggcga acgcgattgc tccctgcagc
      721 ggcgccacca gaaggtgttg gaggaagccc cctcgcccgc catcgacgcc gagacccgcg
      781 ccaagatcgg caaggtctgt gtcgatgcga tcaaggccat cggctacctc ggcgtcggca
      841 ccatcgagtt cctctacgag aacggcgagt tcttcttcat cgagatgaac acccgcctgc
      901 aggtggaaca cccggtcacc gaggccatca caggcatcga cctggtgcgc gagcagatcc
      961 gcatcgccgc cggtctgccg ctttccttcg cccagaagga cgtggtcttc gagggccacg
     1021 ccatagagtg ccggatcaac gccgagaacc ccaagacctt cgccccctcg cccggcctgg
     1081 tcaccgacta tcatgccccg ggcggcctgg gcgtgcggat ggatagcgcc ctctacgccg
     1141 gctacacgat cccgccctac tacgactccc tgatcggcaa actgatcgtc cacggccgcg
     1201 accgggacga atgcattgcg cgcctcaacc gctgcctcgg cgaggtcgtg gtggccggta
     1261 tcgacaccaa tatcccgctc ttccaggaac tgatccagca gtcagacatc cagtcgggga
     1321 actacaacat ccactggctg gaaaactgga tgaaggccca ggcgctggcc ggcgagtgag
     1381 ctggtgtccc gattccgaag ttcgcaagag cttgcggcag gcgccggacg aacttcggaa
     1441 tcgataagga cactaggaag cttgggtttc tagcgtgctt cttcggatct gaagttcgct
     1501 ctgagcttgg ccctggagtg gggcgaactt cagatccagc acgctagcgg tcgcgctctt
     1561 cgcgacagcc gcgctaagct tcaaccatgg cgcagttcga cgcccgcgat ctcctgtcct
     1621 gctacgcgcg cggcgtcttc ccgatggccg acgcacggga ggacgaacgc gtcttcctga
     1681 tcgatccgga gcgtcgcggc gtgatcccgc tggacgcctt ccacatcacg caccgactgg
     1741 cgcggaccgt gcggggcgag cctttcgaga tccgcaccga caccgccttt cgggccgtgg
     1801 tgcaggcctg cgccgagacc gggccgggcc ggaccgagac ctggatcaat caccccatcg
     1861 aggacctgta tgtgggcctg cacgagcagg ggttcgcgca cacggtggag tgctggcagg
     1921 gcggcgagct ggtgggcggg ctctacggcg tctcactgca gggggcgttt ttcggcgaga
     1981 gtatgttttc gcgtcggcgc gacgcctcca aggtggcgtt ggtccacctg gtcgcccggc
     2041 tgatcgccgg cggctaccgc ctgctcgatg cccagttcat gaccgaacac ctgacccagt
     2101 tcggggcgca ggagatttcg cggctggact atcaccggcg cctggcgctg gcgatctcgg
     2161 cggaggcgga gtttcagcga gccggcgcaa tgggcggcgc cgccgctctg caggtgatca
     2221 gccaggcgtc gtagaccgga tgctccagcg ggtgcaggcc cggcgacgac gcgtacatcc
     2281 accccttgaa ggtctggcgc ggcgccagcg ccggcctgcc tggcgcgggg cgcggctggg
     2341 agtccacggt catgtaggcg atggaatcgt cgatcgcctc ctccggcgcc gagcgctcgc
     2401 aggccttcac ggtgaagacc aggctcttgt agcggatcgg acggcccacg gcggcctcga
     2461 agcgcaggct ctcggccgtc accttgtcca gcgcctcgat cacggcgacg tcgtagcgcg
     2521 cgcgccggac cggaacgccc gcgggcttgg cgtcggtggc tg
//
LOCUS       DATAJL010000489         3311 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_67794,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000489 DATAJL010000000
VERSION     DATAJL010000489.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3311
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67794"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            184..891
                     /locus_tag="VHN39_09380"
     CDS             184..891
                     /locus_tag="VHN39_09380"
                     /inference="COORDINATES: protein motif:HMM:NF017771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF899 family protein"
                     /protein_id="HEX2816596.1"
                     /translation="MDAKIETLTPAAELARDNPVRFPNESAAYRKARTALLTEEIELR
                     RHIERVAEQRRALPPGGEVKGDYRFQTEDGPTDLAGLFGDKQTLALYSFMFGPERERP
                     CPMCTNLLGAWEGNAADLGQRLSLVVVARSPIERLVAWKKERGWKNLRLVTDLNDSYS
                     KDYFGLLPDGSEIPSFNVFTRRDGAIRHFWSGEMTGSTADPGQDPRGAPDPGPMWGIL
                     DDTPEGRGGDWYPKLSY"
     gene            complement(906..1082)
                     /locus_tag="VHN39_09385"
     CDS             complement(906..1082)
                     /locus_tag="VHN39_09385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816597.1"
                     /translation="MSSNSKPPPKRFSDLKPAPPPPGVFAPPTPKVSRQKKGKVLTAA
                     EKAAFLASRPDLKT"
     gene            complement(1254..1682)
                     /locus_tag="VHN39_09390"
     CDS             complement(1254..1682)
                     /locus_tag="VHN39_09390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816598.1"
                     /translation="MDRPPALRRLIDLPGVNELEYRAILKRDFAEPEARAENPEIDEC
                     SVANFGLTAEQAEDHPRPAGWDRAERQPIPAQVAAFEAEGWDVTDDKRRPLRVLGHFN
                     QQLWLAIRGVAGSLPFAPDDDTPDPWGSSLAADAKRFRKR"
     gene            1792..2235
                     /locus_tag="VHN39_09395"
     CDS             1792..2235
                     /locus_tag="VHN39_09395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816599.1"
                     /translation="MPKIHPFLWFDTQAEEAANFYVSVFPNSKVLSVSAMTVDFELDG
                     FRVSGLNGGPNFNFTEATSFFIECQDQAEVDYYWDKLVEGGGKHSQCGWLKDRFGFSW
                     QVVPKQLFETLGGSDAEGRKRAMTAMMQMTKLDIAKMQAAYAGKG"
     gene            complement(2232..>3311)
                     /locus_tag="VHN39_09400"
     CDS             complement(2232..>3311)
                     /locus_tag="VHN39_09400"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2816600.1"
                     /translation="PPDLNDGWTTARAEQAGLDEAALARIVQAQIDSDPAGKRPPLIH
                     SILVAHHGKLVLEEYFSGHGRDEPHDTRSAAKTFNSVMLGAVMLHDPALRPDSRIYDL
                     MAARGPFAKPDPRKAEITLAHLMTHTSGLACDDNDDNSPGNEETLQSQTTQPDWSKYT
                     LDLPMAHDPGSRYAYCSANANLVAAGLAARTGEWIPELFDRMIARPLQFGPWYWDLTP
                     TGEGYGGGGVRVRPRDLLKIGQTFLDGGVWHGRRIVSADWVKASTAPHIDVSPATTGL
                     SKDDFGNFYGVAKDGYAWHLNDLKVGDRVYRDYEATGNGGQLLIVVPDADLAVVITAG
                     NYGQGGIWTRWRDSIVAQQIIPAIR"
BASE COUNT          513 a         1051 c         1176 g          571 t
ORIGIN      
        1 tgcgggacct gggcgacgtc acagtgctcg cggctgcgaa cgggctcggc ttcgccgaac
       61 ggatcgtaat gccggccaac aacctgatcg tggtgttcga gaaggcctag cccggcttgc
      121 caaaccgcgc ccggaccctt caccccctca gcgggttatc tccccaaagt ggaggactgt
      181 ccgatggacg ccaagatcga aaccctgacc ccggccgccg agctggcgcg cgacaacccc
      241 gtgcggttcc ccaacgagag cgcggcctat cgcaaggcgc gcaccgcgct gctgaccgaa
      301 gagatcgaac ttcgccgcca tatcgagcgg gtggccgaac agcgccgtgc tctgccgccg
      361 ggcggcgagg tgaagggcga ctaccgcttc cagaccgagg atgggcccac cgaccttgcc
      421 ggcctgttcg gcgacaagca gacgctcgcc ctctacagct tcatgttcgg gcctgagcgc
      481 gagcggccct gcccgatgtg caccaatctg ctgggcgcct gggagggcaa cgccgccgac
      541 cttggccagc gcctgtcgct ggtggtcgtg gcccgttcgc ccatcgagcg gctggtcgcg
      601 tggaagaagg agcgcggctg gaagaacctg cggctggtga ccgacctcaa cgacagctat
      661 tcgaaagact acttcggcct gctgccggac ggctcggaga ttccgtcctt caacgtcttc
      721 acccgccgcg atggcgccat ccggcacttc tggtcgggcg agatgaccgg ctccacggcc
      781 gatcccggcc aggacccccg cggcgcgccg gatcccgggc cgatgtgggg catcctcgac
      841 gacaccccgg aaggccgcgg cggcgactgg tacccgaagc tcagctacta ggtcttgagg
      901 tccgcctaag tcttcaggtc ggggcgtgag gccaggaacg cggccttttc ggcggcggtc
      961 agcaccttgc ccttcttctg gcgcgagacc ttcggcgtcg gcggggcgaa gacgccgggc
     1021 ggcggcgggg ccggcttcag atcggaaaag cgcttgggtg ggggcttgga gttcgagctc
     1081 atcggacggt cctagtgtgg cgattcggaa attcgcctgc gcttgtggcg gacgccgagc
     1141 gaatttccga atctccagcc acactagcaa gtctatgttt tcgagtgtgc ttcttggatc
     1201 tgaagttcgc tccgcgcagg gtccaaactg aggcgaactt caaatccggc acactagcgt
     1261 ttgcggaagc gcttggcgtc ggccgccagg gacgagcccc aggggtcagg cgtgtcgtcg
     1321 tccggcgcga agggaaggga accggcgacg cctcggatgg cgagccagag ctgctggttg
     1381 aagtggccga gcacccgcaa gggccggcgc ttgtcgtcgg tgacgtccca gccctcggcc
     1441 tcgaaggccg cgacctgggc cgggatcggc tggcgctcgg ccctgtccca gcccgccggg
     1501 cgcggatggt cttcggcctg ctctgctgtg aggccgaaat tggccaccga gcattcgtcg
     1561 atctctggat tctccgcccg ggcctcgggc tcggcgaagt cgcgcttgag gatcgcgcgg
     1621 tactcgagct cgttgacccc gggcaggtcg atcaggcggc gaagcgccgg cgggcggtcc
     1681 atcgggctgg cctatcgcgc ttcgcgggcc ttaggttgga aaaagcgcgg cgccctgtcg
     1741 gaaccgggcg cggcgaaacg tccttcggac ggaaacgctc aaggagggct catgccgaag
     1801 atccatccgt tcctctggtt cgacacccag gccgaggagg ccgcgaactt ctacgtctcg
     1861 gtgttcccca attccaaggt gctgtcggtg agcgcgatga cggtcgattt cgaactcgac
     1921 ggctttcggg tgagtggtct gaacggcggg ccgaacttca acttcacgga ggccacgtca
     1981 ttcttcatcg agtgtcagga tcaggcggag gtcgactact attgggataa gctggttgag
     2041 ggcggcggta agcacagcca gtgcggctgg ctgaaggacc gcttcggctt ctcgtggcag
     2101 gtggtgccca agcagctctt cgagaccctg ggcgggtctg acgccgaagg ccgtaagcgc
     2161 gccatgacgg cgatgatgca gatgaccaag ctcgacatcg ccaagatgca ggcggcctac
     2221 gcgggcaagg gctagcggat cgccgggatg atctgctggg cgacgatgct gtcgcgccag
     2281 cgggtccaga tgccgccctg gccgtagttg cccgccgtga tgaccacggc gaggtccgcg
     2341 tccggcacga cgatcagcaa ctggccgccg ttgccggtgg cttcgtagtc ccgatagacc
     2401 ctgtcgccga ccttcaggtc gttgaggtgc caggcatagc cgtccttggc cacgccgtag
     2461 aagttgccga agtcgtcctt gctgagcccg gtggtggcgg ggctcacgtc gatgtgcggc
     2521 gccgtcgagg ctttgaccca gtcggcgctg acgatgcgcc ggccatgcca gaccccgccg
     2581 tcgagaaagg tctggccgat cttcaaaagg tcgcgcggac gaacccgcac gccgccgccg
     2641 ccgtagcctt cgcccgtggg ggtcaggtcc cagtaccagg gtccgaactg caacggcctg
     2701 gcgatcatgc ggtcgaagag ttcgggaatc cattcgccgg tgcgcgcggc gaggcctgcg
     2761 gccacgaggt tggcgttggc cgagcagtag gcgtatcggc tccccggatc gtgggccatg
     2821 ggcaggtcga gggtgtattt cgaccagtcc ggctgggtgg tctggctctg cagggtctcc
     2881 tcgttgccag gggagttgtc gtcgttgtcg tcgcaggcca ggcccgaggt gtgcgtcatc
     2941 aggtgcgcca gcgtgatctc ggccttgcgc gggtccggct tggcgaaggg gccgcgggcc
     3001 gccatcaggt cgtagatgcg gctgtcgggg cggagggccg ggtcgtgcag catgaccgcg
     3061 cccagcatca ctgagttgaa agtcttcgcg gccgagcggg tgtcgtgcgg ctcatcgcgg
     3121 ccgtggcctg agaagtactc ctccagcacc agcttgccat gatgggcgac caggatggaa
     3181 tggatcaggg gcgggcgctt gccggcggga tcgctgtcga tctgagcctg gacgatgcgg
     3241 gccagcgccg cctcgtccag gcccgcctgc tcggcgcgcg cggtggtcca gccgtcgttc
     3301 aggtccgggg g
//
LOCUS       DATAJL010000490         1912 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8516,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000490 DATAJL010000000
VERSION     DATAJL010000490.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1912)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8516"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..621
                     /locus_tag="VHN39_09405"
     CDS             <1..621
                     /locus_tag="VHN39_09405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEX2816601.1"
                     /translation="LLNVLAKREAAIVSATPGTTRDIIEVPMVLGGYKVIVADTAGLR
                     KTDDDIEAEGVRRAEAWAETAGLRVWLVDGYGEPEPEVPASLRPGDIVLLTKRDLGEG
                     KDGLPGEPFTAKSPNDVAWLERSLTQTVVEALAGGEPPAATRLRHRELLTEAAERLRH
                     ALAEDQALELAAEDVRLAARALDRITGRIDPEQVLGRIFSTFCIGK"
     gene            680..>1912
                     /gene="mnmG"
                     /locus_tag="VHN39_09410"
     CDS             680..>1912
                     /gene="mnmG"
                     /locus_tag="VHN39_09410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEX2816602.1"
                     /translation="MTWDVIIIGGGHAGCEAAAASARFGARTLLLTHKLETIGEMSCN
                     PAIGGLGKGHLVREIDALDGLMGRLGDRAGIQFRLLNRSKGAAVRGPRSQIDRRLYRE
                     AMQAELAATPNLTLVAEAVEDLIVEDGVVVGVLGASGEAYRAGRVVLTTGTFLKGVIH
                     RGDERIPAGRVGDAPAIGLSDRLYASGLKMGRLKTGTPARLDGRTIDWDQLEMQAADA
                     EPVPFSFLTDQITTRQIECGITYTTAETHRIIAERLGESAVYGGKTTGIGPRYCPSIE
                     DKVVRFADKTSHQVFLEPEGLDDDTVYPNGISTSVSEETQDLFLRTMPGLQAVQVRRY
                     GYAIEYDYVDPRELYPTLEAKRLPGLYLAGQVNGTTGYEEAGAQGLVAGLNAARAASG
                     ADPAAFARDEAYIGVLIDD"
BASE COUNT          299 a          668 c          672 g          273 t
ORIGIN      
        1 ctcttgaatg tgctcgccaa acgcgaggcg gccatcgtct cggcgacgcc ggggaccact
       61 cgggacatca tcgaggtccc catggtgtta ggcggctaca aggtgatcgt cgccgatacc
      121 gccggcctgc gcaaaaccga cgacgacatc gaggccgagg gggttcgccg cgccgaggcg
      181 tgggcggaga cggcgggcct aagggtctgg ctggtggatg gctacggcga gccggagccg
      241 gaggtcccgg cctccctgcg ccctggcgac atcgtgctgc tgaccaagcg cgacctcggt
      301 gaaggtaagg acggcctgcc gggggagccc ttcaccgcca agagccccaa tgacgtggcc
      361 tggctggagc ggtcgctgac ccagaccgtg gtcgaggccc tggccggcgg ggagccgccc
      421 gccgccaccc gcctgcgcca ccgcgagctg cttaccgagg ccgccgagcg cctgcgccac
      481 gcgctcgccg aggatcaggc cttggagctg gccgccgagg acgtccgtct ggccgcccgc
      541 gcgctcgacc gcatcaccgg ccgtatcgac cccgaacagg tgctggggcg gatcttctcg
      601 accttctgca tagggaagtg accgcgcacc cgttgtttca cgtgaaacac cgtcatcctt
      661 cgactatatg acgccctcca tgacctggga cgtgatcatc atcggcggcg ggcacgccgg
      721 ctgcgaggcg gcggccgctt cggcgcggtt cggcgcgcgc acgctcttgc tcacccacaa
      781 gctcgagacc atcggcgaga tgagttgtaa tccggcgatc gggggtctcg gtaagggcca
      841 cctggtccgg gagatcgacg cactggacgg actgatgggc cggctgggcg accgggcggg
      901 catccagttc cgcctgctga accgctccaa gggcgccgcg gtgcgcgggc cgcgctcgca
      961 gatcgaccgc aggctctacc gcgaggccat gcaggcggag ctggccgcca caccgaacct
     1021 gaccctcgtc gccgaggcgg tggaggacct gatcgtcgag gacggcgtgg tcgtgggcgt
     1081 gctgggcgcc agcggagagg cctaccgcgc cggccgcgtg gtcctgacca ccggcacctt
     1141 cctgaagggc gtgatccacc gtggcgatga gcgcatcccc gccggccgcg tgggcgatgc
     1201 gccggccatc gggctctccg atcggctcta tgcctcgggc ctgaagatgg ggcggctgaa
     1261 gaccggcacc ccggcgcggc tggatgggcg gaccatcgac tgggatcagc tggagatgca
     1321 ggcggccgac gctgagcccg tgccgttctc gttcctgacc gatcagatca ccacccgcca
     1381 gatcgagtgc gggatcacct acacgaccgc ggagacccac cggatcatcg ccgagcgcct
     1441 gggcgaatcc gcggtctatg gcggcaagac caccggcatc gggccgcgtt actgcccctc
     1501 catcgaggac aaggtggtcc ggttcgccga caaaaccagc catcaggtgt tcctggagcc
     1561 cgagggcctg gacgacgaca cggtctatcc gaacggcatc tcgacctcgg tgtccgagga
     1621 gacccaggac ctgttcctgc gcaccatgcc cggcctgcag gccgtgcagg tgcgccgcta
     1681 cggctacgcc atcgaatacg actatgtgga cccccgcgag ctctatccga ccctggaggc
     1741 caagcggctg cccggcctct acctggccgg ccaggtcaac gggaccacgg gctatgagga
     1801 ggcgggcgcg caggggctgg tggccgggct gaacgccgcc cgcgcagcgt ccggcgccga
     1861 tcccgccgcc ttcgcccggg acgaggccta tatcggcgtg ctgatcgacg ac
//
LOCUS       DATAJL010000491         6724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58551,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000491 DATAJL010000000
VERSION     DATAJL010000491.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6724
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58551"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..719
                     /locus_tag="VHN39_09415"
     CDS             <1..719
                     /locus_tag="VHN39_09415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX2816603.1"
                     /translation="SWSFSRDAGLGLDFAATTYFDGQGFLAPKALGLTSAEELSGARI
                     CVQSGTASQDNLADFFRARGLSYKPVVVASEAEARRLYENDGCDVFTADISALAGSRS
                     VLNNPGAHVILPDVISKEPLGPVVRQNDPVWADIVRWTVYATILGEELGLTSKTVVQA
                     RETASDPQTRRLLGVDGDYGALLGLQKDWAFQVIRQVGAYHEIFRRNVGGDSALKLDR
                     GLNALWNAPKPGLLYAPPFR"
     gene            complement(716..1180)
                     /locus_tag="VHN39_09420"
     CDS             complement(716..1180)
                     /locus_tag="VHN39_09420"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2816604.1"
                     /translation="MPQIELSAARAFLATSQAAVVSDAVTPAEWYRLRVPQGLVWVAT
                     ESDHPIGFASVEPFEDALHLWELAVHLDAQRRGTGRALVEAVAADARARGLSAVTLTT
                     FRDVSFNAPFYARRGFEQVDLATLSPRLTAVRENEARMGLDMSNRCAMRLSL"
     gene            complement(1223..2065)
                     /gene="sseA"
                     /locus_tag="VHN39_09425"
     CDS             complement(1223..2065)
                     /gene="sseA"
                     /locus_tag="VHN39_09425"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004792 - thiosulfate sulfurtransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HEX2816605.1"
                     /translation="MSDPIVSTTWLAERLGSAEVVIVDATWFMPDEPRTGAEAYAAGH
                     IPGAVFFDIDAISDHATDLPHMLPAPDAFAEAAGALGLRRDLTIIVYDAQGIFSGPRV
                     WWTLRTMGFPEVFVLDGGMLKWRAEGRPVETTLPHPVPATIEPAFDPGLVRDLDAVRS
                     VLDRRDAQVIDARPGPRFRGEVPEPRKGLRSGHMPGALNVPWGGLINADGTMKSGEIL
                     RAAFEGAGVDLDGPMVTTCGSGVSASLLALALARLGREDVAVYDGSWTEWGGRADTPI
                     VTGA"
     gene            complement(2062..3063)
                     /locus_tag="VHN39_09430"
     CDS             complement(2062..3063)
                     /locus_tag="VHN39_09430"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEX2816606.1"
                     /translation="MTIAQSVLETIGNTPLIRLNRASALTGCEILGKAEFMNPGQSVK
                     DRAALWMVRDAEASGRLRPGGRIVEGTAGNTGIGLAMVAKALGYSCTIVIPRTQSQEK
                     KDAIRLYGAELVEVDAVPYANEMNYVKVSGRLAQELDAAEPAGAVWANQFDNLANREA
                     HVQTTGPEIWGQTGGRIDGFISAVGSGGTLAGVAQALRAQNPDVAIGLVDPFGSAIYS
                     WYTAGELKPEGNSITEGIGQGRITANLEGLTVDLSYRVSDEDMLLALFDLVEHEGLVM
                     GGSTGINIAGAIRLARDLGPGKTIVTVLADLGQRYQSKIYNPDFLRERDLPVPGWME"
     gene            complement(3107..4387)
                     /locus_tag="VHN39_09435"
     CDS             complement(3107..4387)
                     /locus_tag="VHN39_09435"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013478905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane-fatty-acyl-phospholipid synthase
                     family protein"
                     /protein_id="HEX2816607.1"
                     /translation="MSLAQSPSLGPSWGPSLADLAGDRRAFRRLPELKGAPAVFRAAV
                     RLIARNWAIGALTFTLPSGQELFIAGNEPGPHARLTIKDYRFIRRALAAGDIGFAEAY
                     IAGEFDTPNLPDLLYVFAGNWDRVHHVTMGNPLAWTMNRIRHALKPNSRQGAKKNIHA
                     HYDLGNAFYGQWLDSTMTYSSAKYERPGQPLPEAQTAKYKALAQSMGLQSGQSVLEIG
                     CGWGGFAEYAAREVGAKVTAITISEEQYAFAKQRMFAAGLNERADIKLVDYRDVEGRF
                     DRVASIEMFEAVGERYWPSYFGKINETLAPGGRAGLQIITIKDEYFEEYRSRSDFIQK
                     YIFPGGMLPSEERLKRVTAKAGFAWTGIDRFGLDYADTLAEWHASFDKAWSDIRPLGF
                     DERFRKLWKFYLSYCEAGFRTQRTNVVQLSLAKA"
     gene            4575..5429
                     /gene="kdsA"
                     /locus_tag="VHN39_09440"
     CDS             4575..5429
                     /gene="kdsA"
                     /locus_tag="VHN39_09440"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEX2816608.1"
                     /translation="MAVLKLDRWNIAIGDGQPLVVMAGLNVLEDEGLALETCHHLQGV
                     CADLGLPYIFKASFDKANRSSIHSYRGPGLTEGLRILAKVKAEFGVPIVTDVHEIDQA
                     DAVATLADIVQIPAFLCRQTDLVIATARATARAGGLLHVKKGQFLAPWDCKNILDKIR
                     EATGRDFTILCERGVSFGYNNLVVDMLGIEEMKQLGAPVTIDATHAVQLPGADPRSNS
                     ASTGGRRFGVPLLAKAAVAAGANGVFLEFHPEPDKALCDGPSCLPLAGARDLLATLQA
                     VHAAVQPA"
     gene            5464..>6724
                     /locus_tag="VHN39_09445"
     CDS             5464..>6724
                     /locus_tag="VHN39_09445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX2816609.1"
                     /translation="MDLSALQHLLGLAPGRRVACVGDLMVDRFVYGEVSRVSPEAPVP
                     VLARSRELMMLGASGNVARNVAALGGEVSLVGVIGGDAEGAHAVRLVGEEAGVEGYLV
                     TDPDRPTTLKTRFVSGGQHILRVDLESNRPVSGEVEQRLVRTIRDAAKGAGAILLSDY
                     GKGVVTEAVIAVCREAAAESGGRLVVDSKARSFARYGAVDMIKPNAAELGHATDMPTE
                     TDDQVAAALTRALELWEAKAILVTRASKGISLAVRGEPVRHFPTAAREVFDSSGAGDT
                     TLAALGLALASEVPIEDAIAFAQLASGVAVGKVGTATVSPDELIEAALSAHMAPAEAK
                     VATAQRMADEVARWRAKGLKVGFTNGCFDILHKGHVAYLSQARGWCDRLIVGLNSDDS
                     VRALKGEGRPINDLESRALVLAGLGSVD"
BASE COUNT         1061 a         2239 c         2351 g         1073 t
ORIGIN      
        1 cctcttggtc gttttcgcgc gacgccgggc tcgggctcga tttcgccgcg accacctatt
       61 tcgacggcca ggggttcctg gcgcccaagg ctctgggttt gaccagcgcg gaggagcttt
      121 ccggcgcgcg catctgcgtc cagtccggca cggccagcca ggacaatctc gccgacttct
      181 tccgtgcccg cggcctgagc tacaagcccg tggtggtggc ctcggaggcg gaggcgcggc
      241 ggctctacga gaacgacggc tgcgacgtat tcaccgccga catatcggcg ctggccggct
      301 cgcgctcggt actgaacaac cccggcgccc acgtgatcct gcccgacgtg atctccaagg
      361 agccgctggg gccggtcgtg cggcagaacg atcccgtgtg ggccgacatc gtccgctgga
      421 cggtctacgc cacgatcctg ggcgaagaac tgggcctgac ctccaagacc gtcgtccagg
      481 ctcgcgagac cgcgtcggac ccgcagacgc ggcgcctgct gggtgtggac ggcgactatg
      541 gcgcgctcct gggcctgcag aaggactggg cgttccaggt gatccgccag gtcggggcct
      601 atcacgagat attccgccgc aacgtcggcg gcgactccgc cctgaagctg gaccgcggcc
      661 tcaacgccct gtggaacgcg ccgaaacccg gcctgctcta cgcgccgcct ttccgttaga
      721 gcgacaggcg catcgcacag cggttggaca tgtcgagacc catccgcgct tcgttttccc
      781 gcacggccgt cagccgcggg ctgagcgtgg ccaagtccac ctgctcgaag ccccggcggg
      841 cgtaaaaggg cgcattgaaa gacacgtcgc ggaaggtggt gagcgtcacc gccgacaggc
      901 cgcgcgcccg cgcatcggcg gcgacggcct ccaccagggc tcggccggtc ccgcgccgct
      961 gcgcgtccag atgcacggcc agttcccaga ggtgcaaggc gtcttcgaac ggctcgacgg
     1021 acgcaaagcc gatcggatgg tcgctctcgg tcgcgaccca gaccaggccc tgcgggacgc
     1081 gcaggcggta ccattcggcg ggcgtcaccg catcgctgac cacggcggcc tggctggtgg
     1141 ccaggaaggc ccgcgccgcc gacaactcga tctgcggcaa ccggtcgatg tcggatggcc
     1201 gggcgaggcg gatctcgatg ggtcaggctc cggtcacgat cggcgtgtcc gcgcggccgc
     1261 cccattcggt ccaggagccg tcgtagactg ccacatcctc acggccgagg cgggcgagcg
     1321 ccagggccaa cagggaagcg ctgacgcctg agccgcaggt cgtgaccatg gggccgtcga
     1381 gatcgacgcc ggctccttcg aaggcggcgc gcaggatctc gccggacttc atggtgccat
     1441 cggcgttgat caagccgccc caagggacgt tgagcgcacc cggcatgtgg ccgctgcgca
     1501 gccccttacg aggctcgggg acttccccgc ggaagcgagg ccctggccgg gcgtcgatca
     1561 cctgggcgtc gcggcggtcc agcacgctgc gaaccgcatc gagatcgcgg accaggccgg
     1621 ggtcgaaggc gggctcgatg gtcgccggga ccggatgggg cagggtggtt tcgaccggcc
     1681 gcccctcggc gcgccatttc agcatcccgc cgtcgaggac gaagacttcc ggaaagccca
     1741 tggtccgcaa ggtccaccag actcgcgggc ctgagaagat cccctgggcg tcgtagacga
     1801 tgatggtgag gtcccgccgc aggcccagcg cgccagccgc ctcggcgaaa gcgtcggggg
     1861 ccggcagcat gtgcggcagg tcggtggcgt gatcggagat cgcgtcgatg tcgaagaaca
     1921 ccgcgcccgg aatatgaccc gcggcgtagg cttccgcacc ggtgcgcggc tcgtccggca
     1981 tgaaccaggt ggcgtcgacg atcaccacct cggccgagcc cagccgctcg gcgagccagg
     2041 tcgtggagac gatcggatcg ctcattccat ccatccgggc acgggaaggt cccgctcgcg
     2101 caggaaatcc gggttgtaga tcttggactg atagcgctgc ccgaggtcgg caagcacggt
     2161 gacgatggtc ttgccggggc cgaggtccct ggcgagccgg atcgcgccgg cgatattgat
     2221 ccccgttgag ccgcccatca ccaggccctc gtgttccacg agatcgaaaa gggcgagcag
     2281 catgtcctcg tccgagactc gataggacag gtcaaccgtc aggccttcga gattagctgt
     2341 gatgcggccc tggccgatgc cctcggtgat cgaattaccc tccggcttga gctcgccagc
     2401 cgtgtaccaa ctgtagatcg ccgagccgaa gggatcgacc aggccaatag ccacgtcggg
     2461 gttctgcgcc cgcagagcct gggcgacccc cgccagggtg ccgccggagc ccacggcgct
     2521 gatgaagccg tcgatgcggc ccccggtctg gccccagatc tccggaccgg tcgtctggac
     2581 gtgggcctca cgattggcga ggttgtcgaa ctggttggcc cagaccgccc cggcgggctc
     2641 ggccgcgtca agttcctgcg ccaagcggcc agaaaccttc acgtaattca tctcgttggc
     2701 gtaggggacc gcgtcaacct ccaccagctc ggcgccatag agccggatag cgtccttctt
     2761 ctcctggctc tgggtgcgtg ggatgacgat ggtgcagctg tagcccagcg ccttggcgac
     2821 catggccagg ccgatgccgg tattgcccgc cgtgccctcg acgatgcggc cgccggggcg
     2881 caagcggcca ctggcctcgg cgtcgcgaac catccagagc gcggcgcggt ccttcaccga
     2941 ttggcccggg ttcatgaact cggccttgcc gaggatctcg cagccggtca gcgcgctggc
     3001 gcggttcagc cggatgagcg gcgtgtttcc gatcgtctca aggacggact gcgcaatcgt
     3061 catggcggct acttaagcgc gccggagcat aagcagaagg ggccgctcaa gctttggcga
     3121 gcgagagctg cacgacgttg gtgcgctggg ttcggaagcc cgcctcgcaa tagctcagat
     3181 agaacttcca gagcttgcgg aaccgctcgt cgaagccgag cgggcggatg tcgctccagg
     3241 ccttgtcgaa gctcgcgtgc cattcggcca gcgtgtcggc gtagtcgagg ccaaagcgat
     3301 cgatgccggt ccaggcgaag cccgccttgg cggtgacccg cttcaggcgc tcctccgacg
     3361 gcaacattcc gccggggaag atgtacttct ggatgaagtc ggagcggctg cggtattcct
     3421 cgaagtactc gtccttgatc gtgatgatct gcaggccggc ccggccgcca ggcgcgagcg
     3481 tctcgttgat cttgccgaag taggacggcc aatagcgctc accgacggct tcgaacatct
     3541 cgatggaggc gacgcggtcg aagcggcctt ccacatcgcg gtagtccacc agcttgatgt
     3601 cggcgcgctc gttgaggccc gcagcgaaca tccgctgctt ggcgaaggcg tactgctctt
     3661 cggagatggt gatggcggtg accttggcgc cgacctcgcg cgccgcatat tcggcgaacc
     3721 cgccccagcc acagccgatc tccagcacgc tctggccgga ctgcaggccc atgctctgcg
     3781 cgagcgcctt gtacttggcg gtctgggcct cgggcagcgg ctggcccggc cgctcgtact
     3841 tggccgagga ataggtcatc gtggagtcga gccactggcc atagaaggcg ttgcccaggt
     3901 cgtagtgggc gtggatgttt ttcttcgcgc cctggcggct gttgggcttc agggcgtggc
     3961 ggatgcggtt catcgtccag gccaggggat tgcccatggt gacgtggtgc acccggtccc
     4021 agttcccggc gaagacatag agcaggtccg gcaggttcgg ggtgtcgaac tcgccggcga
     4081 tgtaggcttc ggcgaacccg atgtcgccgg ccgccagcgc gcggcggatg aaccggtagt
     4141 ccttgatggt caggcgggcg tgcggaccgg gctcgttgcc ggcgatgaac agctcctggc
     4201 cagacggcag ggtgaaggtg agcgccccga tggcccagtt gcgcgcgatc aggcgcacgg
     4261 cggcgcggaa gacagcgggc gcgcctttca gctcgggcaa acggcggaac gcgcggcgat
     4321 cgccggcgag atcggcaagc gaagggcccc acgacgggcc cagcgacggg ctttgagcca
     4381 gactcatgat cgcatccccc gaacggtcac taacaccaca tatcaccact ggtcacgctg
     4441 gcgagagccg gccgaggtcc taaggatacg atgaaacagc cactgtggac gcgggtagcc
     4501 ggggaattga gacttgtgaa ggcccgcggc gcgcgccact tagcccgcga ccgctgcaga
     4561 gctaagggag cgccatggcc gtcttgaagc tggatcgctg gaatatcgcc atcggcgacg
     4621 gccagccgct cgtggtcatg gccggcctca atgtgctgga ggacgagggt ctggctctgg
     4681 agacctgcca ccatctgcag ggcgtctgcg ccgatcttgg cctgccctat atcttcaagg
     4741 cgagcttcga caaggcgaac cggtcctcga tccacagcta ccgcggacct gggttgacgg
     4801 aaggcctgcg catcctggcc aaggtgaagg ccgagttcgg cgtgccgatc gtcactgacg
     4861 tccacgaaat cgaccaggcc gacgccgtgg cgacgttggc ggacatcgtc cagattcccg
     4921 ctttcctgtg tcgccagacc gatctggtga tcgccacagc ccgcgcgacg gcccgcgccg
     4981 gcggtctgct gcatgtgaag aagggtcaat tcctggcgcc ttgggactgc aagaatatcc
     5041 tcgacaagat ccgcgaggcg acgggacgtg acttcaccat cctgtgcgag cgcggcgtct
     5101 cctttggcta caacaacctg gtcgtcgaca tgctgggcat cgaggagatg aagcagctgg
     5161 gcgcgccggt gaccatcgac gccacccatg ccgtgcagct gccgggcgcg gaccccagga
     5221 gcaacagcgc ctccaccggc gggcggcgct tcggggtgcc cctgctggcc aaggcggcgg
     5281 tcgccgcggg cgccaacggg gtgttcctgg agttccatcc ggagcctgac aaggcgctct
     5341 gcgacggccc gagttgcctg ccgctggccg gagccaggga cctgctcgcg acgcttcagg
     5401 cggtccacgc cgccgtgcag cccgcttgac cccgcccgca acgcgccgca catcctgacc
     5461 gcgatggacc tttcagcgct ccagcacctc ctgggcctgg cgcccgggcg tcgcgtcgcc
     5521 tgcgtcggcg acctgatggt cgaccgcttc gtgtatggcg aggtgagccg cgtctcgccc
     5581 gaggcgccag tgccggtcct ggcccgatcc cgcgaactga tgatgctggg cgcgtccggc
     5641 aacgtggcgc gcaacgtggc ggccctgggt ggcgaggtgt ccctcgtcgg tgtgattggc
     5701 ggtgacgccg agggcgcgca tgcggtgcgg ctggtgggcg aagaggctgg cgtcgagggc
     5761 tatctggtca ccgatccgga ccgtccgacc acgctcaaga cccgcttcgt ctccggcggc
     5821 cagcatatcc tgcgcgtcga tctggagagc aaccgcccgg tgtcgggcga ggtcgagcag
     5881 cggttggtgc gcacgatccg cgacgcggcc aagggtgcag gcgcgatcct gctctccgac
     5941 tacggcaaag gcgtcgtcac cgaggcggtg atcgcggtct gccgtgaagc cgccgcggag
     6001 tccggtggcc ggctggtggt ggactccaag gcccgctcct tcgcccgcta tggggcggtg
     6061 gacatgatca agcccaatgc cgccgaactg ggccacgcca ccgacatgcc cacggagacc
     6121 gacgatcagg tcgccgccgc cctgacccgc gccctggagc tttgggaagc caaggcgatc
     6181 ctggtgaccc gggcttcgaa gggcatctcg ctggcggtgc ggggcgagcc ggtaaggcat
     6241 ttcccgacgg cggcgcgaga ggtgttcgac tcctccggag ccggagacac gacgctggcc
     6301 gcgttgggtc tggcgctcgc ttccgaggtc cccatcgagg acgccatcgc ctttgcgcag
     6361 ctggcctccg gcgtggcggt cggcaaggtg gggacggcca ccgtttcgcc ggacgagctc
     6421 atcgaggcag cgctgtcggc ccacatggcg ccggccgagg ccaaggtcgc caccgcccag
     6481 cggatggccg acgaggtcgc ccgctggcgc gccaagggcc tgaaggtggg gttcaccaac
     6541 ggttgcttcg acatcctgca caagggccac gtcgcctacc tttcccaggc gcgcggctgg
     6601 tgcgaccggt tgatcgtggg gctgaattcc gacgacagcg tgcgcgcgct gaagggagag
     6661 ggcaggccga tcaacgatct ggaatcccgc gccctggtgc tggctggtct gggatctgtc
     6721 gatc
//
LOCUS       DATAJL010000492         3513 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58579,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000492 DATAJL010000000
VERSION     DATAJL010000492.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58579"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..735)
                     /locus_tag="VHN39_09450"
     CDS             complement(43..735)
                     /locus_tag="VHN39_09450"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816610.1"
                     /translation="MNIRTALFAAAALASSLVAGTAAQAAAITSLFDTGVNASGTPLA
                     DGTIGDPHYSLVGVPGGTSDIRVRTAIGGFPIGPYFGDDATSAWIGPNNDSQIDGGLG
                     LFDYQTTFTLAGFNAATASISGGWSSDNNGVEILLNGVDTGNAGTDFAQFQIGFAPFS
                     ITSGFHAGVNTLDFIVNNGGGPTALRVEMSGSAATAGGVPEPAAWTMMIAGFGGIGAM
                     LRSRRRTAAATA"
     gene            1006..1278
                     /locus_tag="VHN39_09455"
     CDS             1006..1278
                     /locus_tag="VHN39_09455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816611.1"
                     /translation="MSFVTLDLMASRRRVLTGAATLSLAALVLGVGGSAAAEAAKSSQ
                     KSVDYQTHPKGGHGCNSCKDFQPQTNCKSVEGPIQASGWCNKYAHS"
     gene            1278..2657
                     /locus_tag="VHN39_09460"
     CDS             1278..2657
                     /locus_tag="VHN39_09460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816612.1"
                     /translation="MARLARGLLNLSRRFKFTGLLAFASATLAAGSAMAVPSFAMQTD
                     KPCQACHVGGFGPQLTPYGRDFKLHGYTERAEGKSFTVPFSIMAVASYLHTQTKAASP
                     VADGFSTNDNTALDQVSLFVAGGLGSHLGGFVQTTYDGVAKAWSWDNLDLRAVTVVKI
                     RNLDTVLGLSLNNSPTVQDAWNTLPAWGHPFTDSALAPSPSASPLFSGGLAQNTLGLT
                     AYAWVDTSYYIEAGAYGSPNKTSLIRLGADPFSPGSIEGLAPYGRVAYQTKLAGGTVQ
                     VGAFGMRTDINPGLDRTTGQTDRYSDIGVDGSYQNALDSGDVLSFDARYLREKQTLNA
                     TCALEGLPGPACADNRLNDFRADASYFWRDKVGATVGVFDTWGPSNPFTFADNRTFKP
                     DSSGVMLQLDGTPWGEGKSPLGPRFNMRVGVQYTIYSRFNGANKNFDGAGANASDNNT
                     LRLFTWFAY"
     gene            2751..3425
                     /locus_tag="VHN39_09465"
     CDS             2751..3425
                     /locus_tag="VHN39_09465"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEX2816613.1"
                     /translation="MAGLLESLDAEETLERRRHRHWYDRLMMLADGVFAVALTFLAVD
                     VGTAPAGWTGSLGALWAHLGPQLETYAISFLVISIYWLAHRRFMSMVLTVDAPLTVLT
                     LVMLGLVALLPPATRLIQGYEMYPAARLTYSALVVAIGVSMAAMWGYASLVARVVVSE
                     VSVRARWFLMALMALTPPVVLSLNFALPGTPPAGVVPAVLLVLFVVGWRLRRWILRRP
                     GGPFVG"
BASE COUNT          535 a         1226 c         1178 g          574 t
ORIGIN      
        1 gccctgggac cggcggcgcg ttgatctgga gcgttcggtc ggtcaggccg tcgcggccgc
       61 ggtcctgcgg cgcgagcgca gcatggcccc gataccgcca aagccggcga tcatcatcgt
      121 ccaggccgcg ggctccggca cgccgccggc ggtggcggcc gagccgctca tctcgacgcg
      181 cagggccgtg ggaccgccgc cgttgttgac gatgaagtcg agcgtgttca cgccggcgtg
      241 gaagccggag gtgatcgaga acggcgcgaa cccgatctgg aactgcgcga agtcggtgcc
      301 cgcattgcca gtgtccacac cgttcagcag gatctcgacc ccgttgttgt cggaggacca
      361 gccgccgctg atcgacgccg tcgcggcgtt gaagccggcg agggtgaagg tggtctggta
      421 gtcgaagaga ccgaggccgc cgtcgatctg gctgtcgttg ttcgggccga tccaggcgga
      481 ggtcgcgtca tctccgaagt agggtccgat ggggaagccg ccgatggcgg tgcggacccg
      541 gatgtcgctc gttccgccgg gcacgccgac cagagaatag tggggatcgc cgatcgtccc
      601 gtcggccagg ggcgttcccg aggcgttgac gccggtatcg aagaggctgg tgatcgcggc
      661 ggcctgggcg gccgtgccgg ccacaagcga tgatgccagg gccgcagcgg cgaataacgc
      721 cgttctaata ttcattttat acaactccgg acgcgtcaaa aatcttcgta atacttaaga
      781 cggcagaatt cgaggtccgg caatcgaata cacctgtgag gggaataggc cgacggggat
      841 tcgtcgggcc ggcgcgggca gaaacgtcac gccccggcgc ccggccacgc ggcttgacgc
      901 aagtcaatgt cgtccgggcg caggaggcta caacccgatt atcgatcgag tggatcgaac
      961 ctgtccggcg ggagttaggc cggggacaaa ggtggagcgt caaaaatgtc atttgttacc
     1021 cttgatctca tggcgtcgcg gcggcgcgtc ctgaccggag ccgcgacctt gtctttggcc
     1081 gcgctcgtgc tgggcgtcgg cggctcggcc gcggcggaag ccgccaagag ctcgcagaag
     1141 tccgtcgact accagacgca cccgaagggc gggcacggct gcaactcctg caaggacttc
     1201 cagccgcaga ccaattgcaa gtccgtcgag ggcccgatcc aggcctccgg ctggtgcaac
     1261 aagtacgcgc actcctgatg gcgcgcctgg cccgcggtct cctgaacctt tcgcggcggt
     1321 tcaaatttac cggccttctg gcgttcgcat cggcgacgct ggccgcgggc tcagccatgg
     1381 cggtgccaag cttcgccatg cagaccgaca aaccctgcca ggcctgccat gtgggcggtt
     1441 tcggcccgca gctcacgccc tacggacgtg acttcaaact ccacggctat accgagcggg
     1501 cggaggggaa atccttcacc gtgcccttct cgatcatggc cgtggcctcc tatctccaca
     1561 cccagaccaa ggcggcctcg ccggtcgccg acggcttctc gaccaacgac aacaccgcgc
     1621 tcgatcaggt gagcctgttc gtggccggcg gtctcggctc gcacctgggc ggcttcgtgc
     1681 agacgaccta cgacggcgtc gccaaggcct ggtcgtggga caacctcgac ctgcgcgcgg
     1741 tcacggtcgt gaagatccgg aacctggaca cggtcctggg cctcagcctc aacaattcgc
     1801 ccaccgtgca ggatgcgtgg aacacgcttc ccgcctgggg ccatccgttc accgactcgg
     1861 cgctggcgcc ctcgccatcg gcctcgccgc tgttctcggg cggcctggcg cagaacaccc
     1921 tgggcctgac cgcctacgcc tgggtcgaca cgagctacta catcgaggcc ggcgcctacg
     1981 gctcgccgaa caagacgtcg ctgatccgtc tgggcgccga ccccttctcg cccggcagca
     2041 tcgagggcct cgctccctac ggccgcgtcg cctaccagac caagctggcc ggcggcaccg
     2101 ttcaggtcgg cgccttcggc atgcgcaccg acatcaaccc gggcctcgac cgcacgacgg
     2161 ggcagaccga ccgctactcc gacatcggcg tcgacggttc ctatcagaat gcgctggaca
     2221 gcggcgacgt gctgtccttc gacgcccggt acctgcgcga gaagcagacg ctcaacgcca
     2281 cctgcgcgct cgagggcctg cccggcccgg cctgcgccga caaccgcctg aacgacttcc
     2341 gcgccgacgc ctcctacttc tggcgcgaca aggtcggcgc gacggtcggc gtgttcgaca
     2401 cctggggccc gtccaatccg ttcaccttcg cggacaaccg caccttcaag cccgactcga
     2461 gcggcgtgat gctgcagctc gacggcaccc cctggggcga aggcaagagc ccgctgggtc
     2521 cgcgcttcaa catgcgggtg ggcgtgcagt acacgatcta cagccgcttc aacggcgcca
     2581 acaagaactt cgacggcgcc ggcgccaacg cctcggacaa caataccctg aggctgttca
     2641 cctggttcgc ctactaggcc gggtcagggg cggggcgaga gccccgtccg cctaggcttc
     2701 gcaacgcccc gccgccatcc taagcttccc ccaaacgcgg ggagcactgc atggccgggc
     2761 tgctggaatc cctcgacgcc gaggagacgc tggagcgcag gcgccatcgg cactggtatg
     2821 accggctgat gatgctggcg gacggggtgt tcgccgtcgc gctgaccttc ctggccgtcg
     2881 atgtggggac cgcgccggcg ggctggacgg gcagcctggg cgccttgtgg gcgcaccttg
     2941 ggccgcagct cgaaacctac gccatcagct tcctggtgat cagcatctac tggctggcgc
     3001 accggcgctt catgtccatg gtgctgaccg tcgacgcgcc gctgaccgtg ctgaccctgg
     3061 tgatgctggg cctggtggcc ctgctgccgc cggccacccg gctgatccag ggctatgaga
     3121 tgtaccccgc cgcgcggctc acctattccg ccctggtggt cgccatcggc gtctcgatgg
     3181 ccgccatgtg gggctatgcc agcctggtgg ccagggtggt ggtctcggag gtcagcgtgc
     3241 gcgcgcgctg gttcctgatg gcgttgatgg cgctgacgcc gccggtggtc ctgtcgctga
     3301 acttcgcgct gccgggcacg ccgccggccg gcgtcgtgcc ggccgtcctg ctggtcctgt
     3361 tcgtggtcgg ctggcgcctg cgccgctgga tcctgcgccg cccaggcggc ccgttcgtgg
     3421 gctagcacca cccctccgga tcgtccggct tgtccgcgcc cgccccgccg gcggccggcc
     3481 tggccagagg ccgcggccgg tcctcccaga cct
//
LOCUS       DATAJL010000493         2794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34638,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000493 DATAJL010000000
VERSION     DATAJL010000493.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34638"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..1141)
                     /locus_tag="VHN39_09470"
     CDS             complement(8..1141)
                     /locus_tag="VHN39_09470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2816614.1"
                     /translation="MSGFSASRVAAVMIKEFKQLTRDRLTFAIMLAIPVLQLTLFGYA
                     INFQPRQLPTAVLMQEDSRFARSIVSALRNSAYFQLTAQVRTPAELDALVRKGEVEFA
                     VTIPGDFTRRVVRGDHAQILIEVDASDPSATGGAVAALAALPQEALAHDLKGALAPRA
                     VAVPPFEVVLHNRFNPESITAYNIVPGLLGVILSMTMVMMTSLSVTREIEHGTMESLL
                     ATPIQPIEVMAGKLAPYVLVGLVQTAIILIMARLLFDVPMQGGWTGLSLGVGLFIVGS
                     LALGFLISTVARSQLQAMQMSVFYMLPSILLSGFAFPFAGMPAWARALGEVIPVTHFL
                     RLVRGAMLKGQGLGDQWRELAALLAFVCVVTALAMARYRRTLD"
     gene            complement(1138..2067)
                     /locus_tag="VHN39_09475"
     CDS             complement(1138..2067)
                     /locus_tag="VHN39_09475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006275338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2816615.1"
                     /translation="MTGEASLAIDVKALNKSFGDKHVVQDFSIQVAQGRICGFLGPNG
                     SGKTTTLRMLCGLLTPDSGTGTCLGFDIIAQSEQIKRQTGYMTQRFSLYEDLTIAENL
                     EFTARVYGLDRRAERVHQALERLGLTNRRDQLAGDLSGGWKQRLALASATLHEPKLLL
                     LDEPTAGVDPKARRDFWDEIHDLAGRGLTVLVSTHYMDEAERCHEIAYISYGKLIARG
                     TVEDVVAGAHLVTFHGEGPDVGKLAHELAGKPGVETVAPFGAAVHVSGTDRRALEAAI
                     APWRKPPFKWTEVEPTLEDVFIKLMGQAQDNYA"
     gene            complement(2064..>2794)
                     /locus_tag="VHN39_09480"
     CDS             complement(2064..>2794)
                     /locus_tag="VHN39_09480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEX2816616.1"
                     /translation="RDPAQVTGAQAQAVDARKGGRPLELAVLDADIAAAEAKARDAEA
                     ALRRVSFLEAKGYDSKSALDDAKANAQAADATVKAAKKQREVATLGARTDQIRAADAK
                     VSEAQASLTGAAARLSDNAPAAPAAARVEDVFFQQGEWAPANQPILSLLSDARIKVRF
                     FVPEAALNAYRVGGVVRFACDGCAKGLTARIAYISPRPEFTPPVIYSREARDRLVYLI
                     EAQPSVRLNPGQPVDVEPLGDPLK"
BASE COUNT          439 a          941 c          989 g          425 t
ORIGIN      
        1 ccttaagtca gtccaatgtc cgccgatagc gcgccatggc cagcgccgtg accacacaga
       61 cgaaagccag cagcgcggcc agttcgcgcc actgatcgcc gagtccctgg cccttcagca
      121 tcgcgccgcg caccagtcgc aggaaatggg tgaccgggat cacctcgccc agggcgcggg
      181 cccaggcggg catgccggcg aacggaaacg caaagcccga gagcaggatc gagggcagca
      241 tgtagaagac gctcatctgc atcgcctgaa gctgcgagcg cgccacggtg gagatcagga
      301 atcccagcgc cagcgagccc acgatgaaga ggcccacgcc gagcgaaagg ccggtccagc
      361 cgccctgcat cggcacgtcg aacagcagcc tggccatgat caggatgatc gcggtctgga
      421 ccaggcccac caggacatag ggggcgagct tgccggccat cacctcgatc ggctggatcg
      481 gcgtcgccag caggctctcc atcgtcccat gctcgatttc gcgtgtgacg ctgagcgagg
      541 tcatcatcac catggtcatg gacaggatga cgcccagcag gccgggcacg atgttgtagg
      601 cggtgatcga ctccggattg aagcggttgt ggagcacgac ctcgaacggc gggacggcca
      661 ccgcgcgggg cgcgagcgcg cccttcaggt catgagccag ggcttcctgc ggcagggccg
      721 cgagcgcggc caccgcgcca ccggtcgccg aggggtcgga ggcgtcgacc tcgatcagga
      781 tttgcgcatg atcgccgcga accacgcgac gggtgaaatc tccgggaatg gtgaccgcga
      841 actccacctc gcccttgcgg accagggcgt cgagttccgc cggggtgcgc acctgggcgg
      901 tgagctggaa ataggcgctg ttgcgcagcg ccgagacgat cgagcgggcg aagcgcgagt
      961 cctcctgcat cagcaccgcc gtgggcaact gcctcggctg gaagttgatc gcatagccga
     1021 acagggtgag ctgcagcacc gggatggcga gcatgatcgc gaaggtcagc cggtcgcggg
     1081 tgagctgctt gaactccttg atcatcaccg cggcgacacg gctggctgag aacccgctca
     1141 tgcgtagttg tcctgcgcct ggcccatcag cttgatgaac acgtcctcca gcgtcggctc
     1201 gacctcggtc catttgaagg gcggcttgcg ccagggcgcg atggcggcct ccagcgcccg
     1261 gcggtcggtc ccgctgacgt gcaccgccgc gccgaacggg gccacggtct cgacgccggg
     1321 tttgccggcc agctcatggg cgagcttgcc gacgtccgga ccttcgccgt ggaaggtcac
     1381 cagatgggcg ccggcgacca catcctcgac cgtgccgcgg gcgatcagct tgccgtagct
     1441 gatgtaggcg atctcgtggc agcgctcggc ctcgtccatg taatgggtgg agaccagcac
     1501 ggtcaggccg cggccggcca ggtcgtggat ctcgtcccag aagtcgcggc gggccttggg
     1561 atcgacgccg gcggtgggct cgtcgagcag cagcagcttc ggctcgtgca gagtggccga
     1621 ggccagcgcc agccgctgct tccagccgcc cgagaggtcg cccgccagct ggtcgcggcg
     1681 attggtgagg ccaagccgtt ccagcgcctg atgcacccgc tcggcccgcc ggtcgaggcc
     1741 gtagacgcgg gcggtgaact ccaggttctc ggcgatggtc aggtcctcgt agagcgagaa
     1801 ccgctgggtc atgtagccgg tctggcgctt gatctgctcg gattgcgcga tgatgtcgaa
     1861 acccaggcag gtccccgtcc cggagtcggg ggtcaggagg ccgcagagca tccgaagcgt
     1921 cgtggtcttg cccgagccat tgggtcccag gaagccgcag atccggccct gcgccacctg
     1981 gatcgagaaa tcctgcacga cgtgcttgtc gccgaagctc ttgttcagcg ccttcacgtc
     2041 gatggccagg gacgcctcgc ccgtcacttg agcggatccc cgagaggctc aacgtccacc
     2101 ggctggccgg ggttgagcct gaccgagggc tgggcctcga tcagatagac cagccggtcg
     2161 cgggcctcgc ggctgtagat caccggcggg gtgaactccg gacggggcga gatataggcg
     2221 atcctggccg tcagcccctt ggcgcagccg tcacaggcga agcggacgac gccgccgacg
     2281 cgataggcgt tgagcgcggc ctccggcacg aagaaccgga ccttgatccg ggcgtccgac
     2341 agcagcgaca ggatcggctg gttggccggc gcccattcgc cctgctggaa gaacacgtcc
     2401 tcgaccctgg cggcggcggg cgcggccggc gcgttatccg agagccgggc ggcggcgccg
     2461 gtcaggctgg cctgggcctc gctcaccttg gcgtcggcgg cgcggatctg gtcggtgcgg
     2521 gcgcccaggg tcgccacttc ccgctgcttc ttcgcggcct tcaccgtcgc gtcggcggcc
     2581 tgggcattgg ccttggcgtc gtccagcgcc gacttggaat cgtagccctt ggcttccagg
     2641 aacgagaccc ggcgcagggc ggcctcggcg tcgcgggcct tggcctcggc ggcggcgatg
     2701 tcggcgtcca gcaccgcgag ctccagcggc cgtccgccct tgcgcgcgtc caccgcctgc
     2761 gcctgggcgc ccgtcacctg cgccgggtct cgtt
//
LOCUS       DATAJL010000494         1979 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34658,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000494 DATAJL010000000
VERSION     DATAJL010000494.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1979
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34658"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /locus_tag="VHN39_09485"
     CDS             complement(<1..650)
                     /locus_tag="VHN39_09485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2816617.1"
                     /translation="MSPADDQAAVSAAPPPFKPLPQKAPDVSIEKLPDGTYYVRSNHP
                     PAEGPRSIAHLLAERAAAHPDRPYILQRAPGHGPWGGVTYGEAKRAADGIAQWLLDRG
                     LGSGDSVMVLSANSVEHALVMLGCYTAGVPIAPISPAYSLISSDHAKLKHCFATVRPR
                     VVFAQSSAMFARAFETLKALDPSLTFVSVDGENGTIALSELIATPVTAPPPPPRSPA"
     gene            complement(791..1168)
                     /locus_tag="VHN39_09490"
     CDS             complement(791..1168)
                     /locus_tag="VHN39_09490"
                     /inference="COORDINATES: protein motif:HMM:NF024759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GxxExxY protein"
                     /protein_id="HEX2816618.1"
                     /translation="MTENEIGERLLGCALKVHRALGPGLLESAYEACLSQELAKAGIE
                     HQRQLALPIIYDGMRIDQGYRLDLLVQDKVVVEVKAVATLTDVHRAQLLSYLKLGDYR
                     LGYLLNFNVKMLKDGVCRLANRL"
     gene            complement(1245..1820)
                     /locus_tag="VHN39_09495"
     CDS             complement(1245..1820)
                     /locus_tag="VHN39_09495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816619.1"
                     /translation="MAEAQEQALGIFADAVLKLALHIQQEAMDAQDLDQKVRAAGAVH
                     RLGRGLRQTIALQAKLARDARREAAELPLEPEDEPTEAPTPPDPKTVAVRRRRDWLTR
                     GVERCVWNEYERDDEAAEFTGDSLLEDLHERLADLMADPDAFLELDPDEVLVQLCKDL
                     GVTPPQFHPPAPAVPAGLAAAPTLANGHDSS"
BASE COUNT          333 a          624 c          694 g          328 t
ORIGIN      
        1 gccggtgacc gcggcggtgg aggcggcgcg gtcaccggcg tggcgatgag ctcggagagc
       61 gcaatcgtcc cgttctcgcc atccaccgaa acgaaggtca gcgatgggtc gagcgccttc
      121 agggtctcga aggcgcgggc gaacatcgcg ctcgactggg cgaacaccac gcgcggccgc
      181 acggtcgcga agcagtgctt cagcttggcg tggtccgacg agataaggct gtaggcgggg
      241 ctgatcgggg cgatggggac gccggccgtg tagcagccca gcatgaccag ggcgtgctcc
      301 accgaattgg ccgagagcac catgacgctg tcgcccgagc ccaggccacg gtccagcagc
      361 cactgggcga tcccatcggc cgcccgcttc gcctcgccat aggtgacccc gccccagggt
      421 ccgtggcccg gcgcgcgctg caggatgtag gggcggtccg gatgggccgc ggctcgctcg
      481 gccagcaggt gcgcgatcga gcgcggcccc tcggccggcg ggtggttgga gcggacgtag
      541 taggtcccgt ccggcagctt ctcgatggaa acgtccggcg ccttctgtgg caacggcttg
      601 aacggcggcg gggcggccga aaccgcagct tggtcgtcag cggggctcat ggcgagcctc
      661 ctcccctatt gcttgttgtg gaaaccctag gccaacgccg cgcgcgagca agcacgcccc
      721 aacgtcaact gaggcttctt ggggaagaac cgcggagatc gcggagatac gcggagcgat
      781 ccgagctggg tcacaggcgg ttggccaggc ggcaaacgcc gtctttgagc atcttgacgt
      841 tgaagttgag caggtagccg aggcgatagt cgccgagctt cagatagctg agcagctgag
      901 cccggtgcac gtcggtaagc gtggcgacgg ccttgacctc gacgaccacc ttgtcctgga
      961 ccagaagatc gagacgataa ccctgatcga tccgcattcc gtcatagatg atcggcagcg
     1021 caagctgcct ttggtgttcg atacccgcct tggctaactc ctgggaaaga cacgcctcgt
     1081 aggcgctttc gagcagccca ggacccagcg ccctgtgcac cttcagggcg cagcccagca
     1141 atcgttctcc gatttcattt tcagtcacag cgccacctcc gcgtacctct gcgatcaccg
     1201 cggttggtcc ttctgacatg agggctttgg cgcattcgga cggatcagga ggaatcgtgg
     1261 ccgttcgcca gggtcggcgc cgccgccaac cccgccggga ctgcgggcgc gggcggatga
     1321 aactgtggcg gcgtcacgcc caggtccttg cagagctgaa cgagcacctc gtccggatcg
     1381 agctcaagga aggcgtcggg gtcggccatg aggtcggcca ggcgctcgtg gaggtcttcc
     1441 agcagggagt cgccggtgaa ttcggcggcc tcgtcgtcgc gttcgtattc gttccagacg
     1501 cagcgttcga cgccgcgcgt cagccagtcc cggcggcggc gaaccgcgac ggtcttggga
     1561 tcaggcgggg tgggcgcttc ggtgggttcg tcctcgggct caagtgggag ctcggcggcc
     1621 tcccggcgcg cgtcgcgcgc gagcttggcc tgcagggcta tagtctggcg taggccccgg
     1681 cccagccggt ggaccgcgcc ggcggcgcgg accttctggt ccaggtcctg agcgtccatc
     1741 gcctcctgct ggatgtgcag ggcgagcttc agcaccgcat cggcgaagat gccaagcgcc
     1801 tgttcctgag cctccgccat cattagcgcg tccatgaaca aaaccagaac acataaatcg
     1861 gccgaagtca agattctgga ggcttcagtc ggcaaccttg atccaaagcg gacgtcggag
     1921 atttcaggga tgggtgggga gcggaactct accgcgaggg ccagggaacg ggtgtagac
//
LOCUS       DATAJL010000495         4916 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93885,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000495 DATAJL010000000
VERSION     DATAJL010000495.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4916)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4916)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4916
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93885"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VHN39_09500"
     CDS             complement(<1..258)
                     /locus_tag="VHN39_09500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816620.1"
                     /translation="MSNNYVDGVRMNLPGLSRRGGNAPAGLLSLLFLVAAILSAVQAA
                     RLALFPLFWVAGVLALVSLLIPMALKMANQWERAVVLRMGRL"
     gene            complement(255..662)
                     /locus_tag="VHN39_09505"
     CDS             complement(255..662)
                     /locus_tag="VHN39_09505"
                     /inference="COORDINATES: protein motif:HMM:NF012610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEX2816621.1"
                     /translation="MHTQAQILAALRLGDTGVPIYVQLREQFLRAMGAGLMTPGDQMP
                     TMRQVAVELKVDLNTVRRAYDELERLGAVTLVRGRGSFVAEPPPAMEGPAHETQTDNL
                     ARQTLAAAAALGVDPLALSQRIAALAAEKEKLR"
     gene            complement(741..1871)
                     /locus_tag="VHN39_09510"
     CDS             complement(741..1871)
                     /locus_tag="VHN39_09510"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX2816622.1"
                     /translation="MPTTIAQRMSETGGRPTGFDYLRLGLAVTILCWHSVVTSYGSDV
                     QTAVDSSLARPLMAVLLPAFFTLSGFLVAGSLERSKTIGMFVGLRAIRIFPALAVESL
                     IAALILGPLLTTRPVLGYFADPQFHAYFLNILGDPHFYLPGVFTSTPFNQVNSQLATI
                     PYELRCYIMLTALALLGAVRRPVVLLGAMLALTALGIGWTAIDRPHDLTEASGPVAGW
                     LLIVSFLAGVLIYLYRERIAWRWRWGVGALVLGLVLLDVPMGETLAVFPLAYATVFFG
                     LTNAPKTGVLKGADYSYGIFLYGFAVQQTYVLLAPDGRHWWLNIAVTLPATTAVAALS
                     WHLVEKPALGLRTQLAKLEARWLARPSRASALLAGGSRSPTA"
     gene            2058..3143
                     /locus_tag="VHN39_09515"
     CDS             2058..3143
                     /locus_tag="VHN39_09515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816623.1"
                     /translation="MLAQILALFAAALAQDAPPARTVSPVTVSPQAKSPPADATVTVK
                     TTDRDSQAIMAAWPSGIYAATQDSHVRLDCRVDAHGLAEWCQVASETPAGKGYGKVAM
                     QMRPTFKVKPAMGPDGPIEARMTIAVEFKAQEPYGYYWVSSPDAESRSESAVTMINTP
                     VWDAAPGFDDLARAYPAHGDGVEGYAVEHCMVLKTGALIACTTLKEAPENRGFGHAAR
                     GVTHLFRVSAGQARVRGRSAQWVDIPIRMAPPAAQKDRTVDAPLWLAGFNPQTALKLF
                     PPEAAASGLTTGRGVVRCAVTRNGGMRACTPEAADPEGLGFSEAAVKLASTLRMNLWS
                     QDGAPVEGGQVRVAIRLKLADAKPPPQ"
     gene            complement(3153..>4916)
                     /locus_tag="VHN39_09520"
     CDS             complement(3153..>4916)
                     /locus_tag="VHN39_09520"
                     /inference="COORDINATES: protein motif:HMM:NF013206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HEX2816624.1"
                     /translation="AWAQPSPELSTCDGPQNPAACQAVRGSRTEGWAAQSRAEVFAQH
                     GMVATSQPLAAQAGLQILKSGGNAIDAAVATAAMLNLVEPMNVGVGGDLFAIVYVAKE
                     HKLYTLNASGMAPTGATPEHFASLGYRADPANWGPGSGMPQGGILPVTVPGAVWGWDA
                     VLKRFGTRTFREVLAPAAAYAEEGFPVSERIAHDWRLPKALPLTKCCTELDPDSVAAW
                     YIDGKPPVAGQVYRNPDLARTFRILQAQGADAFYKGEIARALVAKSQATGGTMTLADL
                     AAYHGEWVDAAHITYHGHDLYELPPPSQAWAALEMLNVLEACVPVWTPGQTLASLGPR
                     SPEYWHLMVEAKKLAYADLIAFNADPNFVKVPVDRLLSKAHARSLCGKVDPAHASATG
                     RPAGAPELGDTIVLSTADEAGNMVAWVNSNYSGFGSGLTVPGYGFILHNRGGLFSLDP
                     RSPNVIAPHKRPYNTLAAGFVMDGDQPLMSVLLMGGDMQAQGHAQVLVDIFDLGANLQ
                     MATDMARFRHSQVPNKLNLEQNLYDLVGKDLAAMGHDLTKPDSDPMGGFQAILVKPAP
                     GGKRVYRAGSDHRKDGQAVAY"
BASE COUNT          769 a         1687 c         1743 g          717 t
ORIGIN      
        1 tagccggccc atccggagca ccacagcgcg ctcccattgg ttggccatct tgagcgccat
       61 cgggatcagg aggctcacaa gcgccaggac gccggcgacc cagaacagcg ggaagagcgc
      121 caggcgggcg gcctgcaccg ccgaaaggat ggctgccacc aggaacagaa gagagagcag
      181 acccgccggc gcattgccgc cgcgccggga gaggcccggc aagttcatgc gcacgccgtc
      241 tacgtagtta ttgctcatcg gagtttctcc ttctcggcgg cgagcgccgc gatgcgttgg
      301 gacagcgcca ggggatcgac ccccagcgcg gcggcggcgg ccagggtctg gcgcgccagg
      361 ttgtcggtct gggtctcgtg ggcggggcct tccatggccg gcggcggctc ggcgacgaag
      421 ctgccgcgcc cgcgcaccag ggtcacggcg cccagccgct ccagctcgtc ataggcccgg
      481 cgcacggtgt tgaggtcgac tttcagctcg acggccacct gccgcatggt cggcatctgg
      541 tcgcccggcg tcatcaggcc cgcgcccatc gcccgcagga actgctcgcg caactggacg
      601 tagatcggga ccccggtgtc ccccagccgc agggcggcta atatttgagc ctgtgtatgc
      661 atacactcat acaatacacc cacggcttgg cgtgtcaaat gggcggtcgc aaacgtgatg
      721 gcgccgtaag ggtgtcggcc tcaggccgtc ggggatcggc tgccgccggc aagaagggcc
      781 gaagcgcggg acggccgtgc gagccacctg gcctccagct tggcgagctg agtccgaagt
      841 cccagggccg gcttctcgac cagatgccag gacagcgcgg cgaccgcggt ggtggcgggc
      901 agggtgacgg cgatgttcag ccaccagtgc cggccgtcgg gcgccagcag cacgtaggtc
      961 tgctggaccg cgaagccgta gaggaagatg ccgtaggaat agtccgcgcc cttcaggacg
     1021 ccggtcttcg gcgcattggt caggccgaag aagacggtgg cgtaggctag gggaaagacg
     1081 gccagggtct cgcccatcgg gacgtcgagc aggacgagcc ccagcaccag ggcgccgacg
     1141 ccccaccgcc aacgccacgc gatccgctcg cggtagagat agatcagcac gcccgccagg
     1201 aagctcacga tcaggagcca ccccgccacc ggaccgctcg cttcggtgag gtcgtgcggg
     1261 cggtcgatcg cggtccaccc gatccccagc gcggtcaggg cgagcatcgc cccaagcagc
     1321 accaccggac ggcgcaccgc gcccaacagg gccagcgccg tcagcatgat gtagcaccgc
     1381 agctcgtagg ggatggtcgc cagctggctg ttcacctggt tgaacggcgt gctcgtgaac
     1441 acgccgggca ggtagaaatg cggatcgccg aggatgttca ggaaataggc gtggaactgc
     1501 gggtcggcga aatagcccag caccggcctg gtcgtcagca gggggccgag gatcagggcc
     1561 gcgatcaggg actcaaccgc cagcgccgga aagatccgga tggcccgcag gccgacgaac
     1621 atcccgatcg tcttgctgcg ctcgaggctg ccggcgacca ggaagccgct gagggtgaag
     1681 aaggccggca gcagcaccgc catcagcggc cgcgccaggc tggagtccac cgcggtctgc
     1741 acgtcggagc catagctggt caccacgctg tgccagcaca ggatggtgac cgccaggcca
     1801 aggcgcaggt aatcgaagcc ggtcggcctg ccgccggtct cgctcatccg ctgcgctatc
     1861 gtcgtcggca tcgcgcgccc aatcagcccg tgagccccca ccatggctcc ggatgattaa
     1921 gacatcgcgg ccatcggtca ccctcagcag gccgtcggcc ggccgcgcca gctcgtcctg
     1981 gccgcgggcg cggctactca ccctcacgtt cttatgccag tcttatgcgg taaccgtggg
     2041 tgatgacgga ggccgccatg ctggcgcaga tcctggccct gttcgcggcg gcgctggcgc
     2101 aggacgcccc gcccgccagg accgtctcgc cggtgaccgt ctcgccccag gccaagtcgc
     2161 cgcccgccga cgccaccgtt accgtgaaga ccaccgaccg cgacagccag gcgatcatgg
     2221 ccgcgtggcc cagcggaatc tacgcggcca cccaggactc ccatgtgcgg ctcgactgcc
     2281 gtgtcgacgc ccatggcctg gccgaatggt gccaggtcgc ctccgagact ccggcgggca
     2341 agggctatgg caaggtcgcc atgcagatgc gcccgacctt caaggtgaag cctgccatgg
     2401 gtccggacgg cccgatcgag gcgcgcatga ccatcgccgt ggaattcaag gcccaggagc
     2461 cctacggcta ctactgggtc tcgagtccgg acgcggagtc gcggagcgag agcgcggtga
     2521 ccatgatcaa taccccggtc tgggacgcgg cccccggttt tgacgacctg gcccgggcct
     2581 atccggccca cggcgatggg gtcgagggct acgccgtcga gcactgcatg gtgctgaaga
     2641 ccggcgccct gatcgcttgc acgacgctga aggaggcgcc ggagaaccgg ggcttcgggc
     2701 atgcggccag gggcgtgacc cacctcttcc gggtctccgc cggtcaggcc cgcgtgcgcg
     2761 gccgctcggc gcagtgggtc gatatcccga tccgcatggc gcctcccgcc gcgcagaagg
     2821 accgcaccgt cgatgcgccg ctgtggcttg ccggtttcaa tccgcagacg gcgttgaagc
     2881 tgttcccgcc cgaggccgcc gccagcggcc tgacgacggg gcgcggcgtg gtccgttgcg
     2941 cggtgacccg caacgggggc atgagggcct gcacgccgga ggccgccgac cccgagggcc
     3001 tggggttttc agaggccgcc gtgaaactgg cctcgaccct cagaatgaac ctctggtcgc
     3061 aggacggcgc tccggtggag ggcggtcagg tccgcgtcgc gatccggctg aagctggccg
     3121 acgccaagcc tccgcctcag taagccggcg cctcagtagg ccaccgcctg gccatccttg
     3181 cggtggtcgg agccggcgcg gtagacgcgc ttgccgcccg gcgcgggctt caccaggatc
     3241 gcctggaacc cgcccatcgg atcgctgtcg ggcttggtga ggtcgtggcc catggccgcc
     3301 agatcctttc ccaccaggtc gtagaggttc tgctccaggt tcagcttgtt ggggacctgg
     3361 ctgtggcgga agcgggccat gtcggtggcc atctgcaggt tggcgcccag gtcgaagatg
     3421 tccaccagca cctgggcgtg gccctgggcc tgcatgtcgc cgcccatcaa gagcaccgac
     3481 atcaggggct gatcgccatc catcacgaag cccgccgcca gggtgttgta cggccgcttg
     3541 tgcggcgcga tcacgttggg tgacctgggg tccaggctga acaggccgcc gcggttgtgc
     3601 aggatgaagc cgtagccggg caccgtcagg cccgagccga agccggagta gttggagttg
     3661 acccaggcca ccatgttgcc ggcctcgtcg gcggtggaga gcacgatggt gtcgcccagt
     3721 tcgggcgcgc cagccggccg gccggtcgcc gaggcgtgcg ccggatcgac cttgccgcac
     3781 agtgaccggg cgtgggcctt ggagagcagc cggtccaccg ggaccttcac aaagttgggg
     3841 tcggcgttga aggcgatcag gtcggcgtag gccagcttct tggcctccac catcaggtgc
     3901 cagtattccg ggctgcgcgg cccgaggctg gccagcgtct ggcccggcgt ccacaccgga
     3961 acgcaggcct ccagcacatt gagcatctcc agcgccgccc aggcctggga gggcggcggc
     4021 agctcataga ggtcgtggcc gtggtaggtg atatgcgccg cgtccaccca ctcgccgtga
     4081 taggcggcca ggtccgccag cgtcatggtc ccgcccgtcg cctgcgactt ggccaccagg
     4141 gccctggcga tctcgccctt gtagaaggcg tcggcgccct gcgcctgcag gatgcggaag
     4201 gtcctggcga ggtcggggtt gcggtagacc tggcccgcca ccggcggctt gccgtcgatg
     4261 taccaggcgg ccaccgagtc cggatcgagc tcagtgcagc acttcgtcag gggcagggcc
     4321 ttgggcaggc gccagtcgtg ggcgatgcgc tcggagaccg ggaagccctc ctcggcatag
     4381 gcggccgcgg gcgccagcac ctccctgaag gtcctggtcc cgaaccgctt cagcaccgcg
     4441 tcccagcccc agacggcgcc tggtacggtc accggcaata tgccgccctg cggcatgccc
     4501 gaacccgggc cccagttggc cggatcggcg cggtagccga gcgacgcgaa atgctccggg
     4561 gtcgcgcccg tcggcgccat gccgctggcg ttgagcgtgt agagtttgtg ttccttggcg
     4621 acgtagacga tggcgaagag gtcgccgccg acacccacgt tcatcggctc gaccaggttc
     4681 agcatcgccg ctgtggccac cgccgcgtcg atggcgttgc cgccggattt cagaatctgc
     4741 aggccggcct gggcggccag cggctggctg gtggcgacca tgccgtgctg ggcgaagacc
     4801 tcggcccttg actgcgcggc ccaaccctcg gtgcggctgc ctcgcaccgc ctggcaggcg
     4861 gcggggttct gggggccgtc gcaggtggag agctccggcg agggctgcgc ccacgc
//
LOCUS       DATAJL010000496         2612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34685,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000496 DATAJL010000000
VERSION     DATAJL010000496.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34685"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VHN39_09525"
     CDS             complement(<1..228)
                     /locus_tag="VHN39_09525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1150 family protein"
                     /protein_id="HEX2816625.1"
                     /translation="MTPIILSTEAFAALGGPNLVYVRPVTGAEILASVSAAQIQGFEL
                     NPDQTLYAVHRADGERLAVLSDRDSAVAAALA"
     gene            complement(342..764)
                     /locus_tag="VHN39_09530"
     CDS             complement(342..764)
                     /locus_tag="VHN39_09530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HEX2816626.1"
                     /translation="MNRSVLFDSPFLLGFEHTRGLIERAAKAAAESYPPYNVEDRGDG
                     EIRITLAVAGFTPDQLEVSVEDRQLTVAGRREDSAGRPEDAFLHRGIAARGFIRSFVL
                     ADGMVVEEASLEHGLLHIDLSRPEPEKRVLKVPIRTRA"
     gene            complement(888..1418)
                     /locus_tag="VHN39_09535"
     CDS             complement(888..1418)
                     /locus_tag="VHN39_09535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816627.1"
                     /translation="MTRRILTAAICLLALSACEKGKPRHVPADPMALAPPPPVVAAPT
                     EGLSAGLPKLKGLPGVSLDRVGAAPDPLNRKPAVTPGAEATVFAGFAFDPKAKAPARG
                     VDVVVDGKAYGAAYGASRIDVASYFRTPGLTAVGYTMTLPAQALAPGQHSVLLRVVAA
                     DGTGFYESPNYPFTVK"
     gene            complement(1463..1843)
                     /locus_tag="VHN39_09540"
     CDS             complement(1463..1843)
                     /locus_tag="VHN39_09540"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013228.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX2816628.1"
                     /translation="MSRTIVSAHDGVRAPSAYSHAVRCAGLVFVSGTAAYDATGQIVG
                     ETIQEQTAQALRNIAAILKAAGTTLDRAVSATVIVADENDFAGMNEEWVRWFPTDPPA
                     RQGAKLPVRTPRLKVSIAMIAEAS"
     gene            complement(1867..>2612)
                     /locus_tag="VHN39_09545"
     CDS             complement(1867..>2612)
                     /locus_tag="VHN39_09545"
                     /inference="COORDINATES: protein motif:HMM:NF016733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816629.1"
                     /translation="LMKTFRTPFTLIAGIAAAATIGSATPALAANLLVNGDFELPQPS
                     EDSFIVFGAGASFPGWTVMGANKTNAVQLLSSDYSEVNIRFNAESGFASMDLSGGGNA
                     GPKSGISQAVATQIGQAYDLSFWIGNADGTHNGNYALPSTVGLQINDGPLLTYTNSAI
                     SPGRTDWLLVGASFVATGNQTRISFFNETPLADAETGLDNVTLSAAPSAAPEPDSWAL
                     MILGFGGAGLLLRRHRRSGSSPWLSRGSR"
BASE COUNT          429 a          855 c          892 g          436 t
ORIGIN      
        1 cgccagggcg gcggcgacgg cgctgtcgcg gtcggagagc accgccaggc gttcgccgtc
       61 ggcgcggtgg accgcataga gggtctggtc aggattcaat tcgaagccct gaatctgggc
      121 cgccgataca ctggccagga tttcggcccc ggtcaccgga cgcacataaa caagattggg
      181 cccgcccagc gcggcgaaag cttcagtaga tagaataata ggggtcatca tgaccacctc
      241 ctcagaaacg caacgcttcg aacggtcgcc ggttcagcca tccgttcgat tgacgagacg
      301 tcggacatcc gaccgtctcc tttttgatac tgagtctatg ctcaagctcg ggtgcggatc
      361 gggactttca gcacccgttt ttcaggctcg ggccgactca gatcgatgtg cagcaggccg
      421 tgttcgaggc tcgcctcttc caccaccatg ccgtcggcca ggacgaagct gcggatgaac
      481 ccccgcgcgg cgatcccgcg gtgcaggaaa gcgtcttcag gccgcccggc gctgtcttcg
      541 cgccggccgg ccacggtcag ctggcggtcc tccacgctca cctccaactg gtcgggcgta
      601 aagcccgcca cggccagggt gatgcggatc tcgccatccc cgcggtcttc cacattgtag
      661 ggtggatagc tctcggcggc cgccttggcg gcgcgctcga tcagtccgcg ggtgtgctcg
      721 aagcccaaga gaaaggggct gtcgaaaagt accgacctgt tcatcctcga aggagtcctt
      781 gtcgaaagcg actctccggc cgggccgccc agcaatggcg cggctcgacc ggacaaggat
      841 tcaggtgggg atcggggcgg ggattttcaa tgtcccggcc tcggcgccta cttcaccgtg
      901 aacgggtagt tgggcgactc gtagaagccc gtgccgtcgg cggcgaccac gcgcagcagc
      961 acgctgtgct gccccggcgc aagcgcctgg gccggcagcg tcatcgtgta gcccaccgcg
     1021 gtcaggcccg gcgtcctgaa gtagctggcg acgtcgatcc gggacgcgcc gtaggccgcc
     1081 ccataggcct tgccgtccac caccacatcg accccgcggg ccggcgcctt ggccttggga
     1141 tcgaaggcga agcccgcgaa caccgtggcc tcagcgccgg gcgtcaccgc gggtttgcgg
     1201 ttcagcgggt cgggcgcggc gccgacccgg tccagcgaaa cccccggcaa gcccttcagc
     1261 ttcggaagac ccgccgacag cccctccgtg ggcgccgcca ccaccggcgg cggcggggcc
     1321 agcgccatgg ggtcggccgg cacatgccgc ggcttgccct tctcgcaggc gctgagcgcg
     1381 agcagacaga tggcggcggt caggatgcgg cgtgtcacgt ggcgaatccc caagatggca
     1441 aggcgggctt tccccgacag acctacgacg cctccgcgat cattgcgatt gagaccttga
     1501 gcctgggcgt gcgcacaggg agcttggctc cctggcgcgc cggcggatcg gtcggaaacc
     1561 accgcaccca ttcttcgttc atgcccgcaa agtcattctc gtccgcgacg atgacggtgg
     1621 cgctgaccgc ccggtcgagg gtggttcccg cggccttcag gatcgctgcg atgttccgca
     1681 gggcctgggc ggtctgctcc tggatcgtct cgcccacaat ctggccggtc gcgtcatagg
     1741 cggccgtccc ggagacaaac accagtcccg cgcaccttac tgcgtgactg taggcggatg
     1801 gggccctgac accgtcgtgg gcggagacaa tggttctgga catgtgacgc tcctcgtcct
     1861 gcgggctcag cgcgaaccgc ggctcagcca gggcgaggat cccgatctgc gatggcggcg
     1921 cagaagcagt cccgccccgc cgaagcccag gatcatgagc gcccagctgt cgggctcggg
     1981 cgcggccgaa ggcgccgcgg agagcgtgac gttgtcgagc ccggtttccg catcggctag
     2041 cggcgtctcg ttgaagaacg agatgcgggt ctggttgcct gtcgccacga atgaagcgcc
     2101 gacgagcagc caatccgtcc ggccggggga tatcgcgctg ttggtgtagg tcagcagggg
     2161 cccgtcgttg atctgcaggc cgaccgtgct gggcagagcg tagttgccgt tatgggttcc
     2221 gtccgcattg ccgatccaga acgacaggtc gtaggcctga ccgatctggg tcgccaccgc
     2281 ctgggatatc cccgacttgg gaccggcgtt gccgccccct gacagatcca tggaggcgaa
     2341 cccggactcg gcgttgaacc ggatattgac ctcggaatag tccgagctga gcagctgcac
     2401 ggcgttggtc ttgttggcgc ccatcaccgt ccagcccgga aagctggcgc cggcgccaaa
     2461 gacgatgaag gagtcttcgg agggttgggg cagttcgaaa tcaccgttga ccagcaggtt
     2521 cgccgccagg gccggggttg ctgaaccgat ggtcgcggcg gcggcaatgc ccgcgatcag
     2581 ggtgaagggg gtgcggaagg ttttcatgag gt
//
LOCUS       DATAJL010000497         3669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8674,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000497 DATAJL010000000
VERSION     DATAJL010000497.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3669
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8674"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..370)
                     /locus_tag="VHN39_09550"
     CDS             complement(<1..370)
                     /locus_tag="VHN39_09550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816630.1"
                     /translation="MNVPPHAPEPDGQAFALPIALWVNGKRRAIIGRLQTAGILLLFA
                     ALASIPLTVGIGTWLDHRSTTKEWTRPGPACPVVAQVSLAARGAKPPPPFTFLGAHFT
                     YQIGDVECAAVPEKNLFDPSH"
     gene            complement(425..1369)
                     /locus_tag="VHN39_09555"
     CDS             complement(425..1369)
                     /locus_tag="VHN39_09555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816631.1"
                     /translation="MTRTWVLTSAIGAALLSWSAASATQIDPAPAAKAPAGTVSGVTV
                     TAPTKPSPLINPASQFVREHLPQSQSEQYPRFRDAICVKVIGLPSEFAGFIEKRLVEV
                     AGQVHAPVAKDPACVPNVHVVFTTNPQAQVNDIAKRKDILIGFHYFSQSKRVTVMNRP
                     IQAWYVTRTRDTTGNSWIEIANPCPANTPVHDNGPCGDRPIGRAGSRLSNDMSAEVVH
                     SLIIADANKVAGEKIDAVADYIAVLALAKWQGLERCNGIPTILNLMAEGCTDPPDAAT
                     SADLALLTGLYAVDPRELGSQQRMSIAGRMAASASPPK"
     gene            complement(1379..2341)
                     /locus_tag="VHN39_09560"
     CDS             complement(1379..2341)
                     /locus_tag="VHN39_09560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816632.1"
                     /translation="MRHANRRRALAIGGAGLALFTAHLAAAHLAPPTATNPANAVSGV
                     TVTAPEKPNPLVNPESRFVLQHLPQALSDQYPRFRDAICVKVIGLPPEFDAFVAKRIV
                     DLAGEVHAPVANSGACAPNVHVIFTPTPQAQLDDIAKRRDILIGFHFPSQLEKLTTVN
                     RPIQAWYVTRTRDTTGNSWIEVDNPVPLGATITGPGEKPIGRAGSRLGNDMSAEVVHS
                     LIIADANKVAGGKIEAVADYIAVLALAKWQGLEKCNAIPTILNLMADGCTDPPETVTA
                     ADVGLLTGLYAVGSRELGSQQRASIAGHMMDAGKATRASTPQQK"
     gene            complement(2357..3319)
                     /locus_tag="VHN39_09565"
     CDS             complement(2357..3319)
                     /locus_tag="VHN39_09565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816633.1"
                     /translation="MTMRRTSWRHTLALCAAGAGLFAAPFATARLAPPAAANPADTVS
                     GVTVTAPQPANPLVDPATQFVRQHLPESPFSEQFPRFHDKVCVKVQGLPAEFDAFVTR
                     RIVEMASQVHAPLANAADCRPNIHVIFSPQPQAQLSDIAKRRDILIGYQFLPQLKRMS
                     RFTRPIQAWYVTRSVGDNGVSTLDLFDPDRYDPAAGKVPPAGRAGSRLGNGMSAEIVH
                     SLILADANKVAGEKIDAIADYVAVLALARWQGLERCNAVPTILNLMAEGCDARDRPEA
                     ATPGDLALLTGLYQIDPREAGEMQRSSIASVIRKATGSSGGTRH"
     gene            complement(3329..>3669)
                     /locus_tag="VHN39_09570"
     CDS             complement(3329..>3669)
                     /locus_tag="VHN39_09570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816634.1"
                     /translation="LGENLSSELVHSLIIADANKVAGEKIDAVADYIAVLALSRWQGL
                     ERCSSLPTILNLMADGCDAEDRPQAATPGDLALLEGLYTANVRESGSQQRATIASAIR
                     KATTGDGGRR"
BASE COUNT          524 a         1204 c         1310 g          631 t
ORIGIN      
        1 ggtgggaggg gtcgaagagg ttcttctcgg gcacggcggc gcactccacg tcgccgatct
       61 gataggtgaa gtgcgcgccg aggaaggtga acggcggcgg cggcttggcc ccgcgcgcgg
      121 ccagcgacac ctgagccacc accgggcagg ccggcccggg cctggtccat tccttggtcg
      181 ttgagcgatg gtcgagccaa gtcccgatcc cgacggtcag cgggatgctg gcgagcgcgg
      241 cgaacagcag caggatgccg gccgtctgca gtcggccgat tatcgcgcgg cgctttccgt
      301 tcacccagag cgctatcgga agggcgaaag cctggccgtc gggctcgggc gcatggggcg
      361 ggacattcat gaactacagg tgtaaattac accatgcggt ttggctagcc ccggcgacag
      421 gcgcctattt gggcggcgaa gccgaagccg ccattcgccc ggcgatcgac atgcgctgct
      481 gcgaccccag ctcccgcgga tcgaccgcat agagcccggt cagcaaggcc aggtcggccg
      541 aggtcgcggc atccggcggg tccgtgcagc cctcggccat gaggttcagg atcgtcggga
      601 tgccgttgca acgctccagt ccctgccatt tcgccagcgc cagcaccgcg atgtagtcgg
      661 cgacggcgtc gatcttctcc ccggccacct tgttggcgtc ggcgatgatc aggctgtgga
      721 ccacctcggc gctcatgtcg ttggagagcc ggctgccggc gcgaccgatg ggccggtcgc
      781 cgcaagggcc gttgtcgtgg accggcgtat tggccggaca ggggttggcg atctcgatcc
      841 agctgttgcc ggtcgtgtcc cgcgtgcggg ttacgtacca ggcctggatc ggccggttca
      901 tcaccgtcac ccgcttgctc tgcgagaagt agtggaagcc gatcaggata tccttgcgct
      961 tggcgatgtc gttcacctgc gcctgcgggt tggtcgtgaa gactacgtgc acattgggga
     1021 cgcaggcagg gtccttggcc accggcgcat gcacctgtcc cgccacctcg acgagacgct
     1081 tttcgatgaa gcccgcgaac tcgctcggca ggccgatgac cttcacgcag atggcgtcgc
     1141 ggaaccgcgg atactgttcg gactggctct ggggcaggtg ctcgcgcacg aactgcgagg
     1201 ccgggttgat cagcgggctc ggctttgtcg gcgcggtcac ggtcacgccg ctgacggtgc
     1261 cggccggcgc cttagccgcc ggagccgggt cgatctgggt cgccgacgcg gcgctccagg
     1321 agagcagggc cgcgccgatc gcgctcgtca gaacccatgt tcgcgtcatc gtcaccccct
     1381 atttctgctg cggcgtggac gcccgtgtgg ccttgccggc gtccatcata tgcccggcga
     1441 tcgaggcgcg ctgctgcgag cccagttccc gcgaaccgac cgcatagagc ccggtcaaca
     1501 gccccacgtc ggccgccgtc acggtctcgg gtggatctgt gcagccgtcg gccatcagat
     1561 tgaggatggt cgggatcgcg ttgcacttct ccagcccctg ccacttggcg agcgccagga
     1621 cggctatgta gtccgccacc gcctcgatct tcccgccggc caccttgttg gcgtcggcga
     1681 tgatcaggct gtggaccacc tcggcgctca tgtcgttgcc gagacggctg ccggcgcggc
     1741 cgatgggctt ctcgcccggg ccagtgattg tggcgcctaa aggcacggga ttgtcgactt
     1801 cgatccagct attgcccgtc gtgtcgcggg tgcgggtgac gtaccaggcc tggatcggcc
     1861 ggttgacggt ggtcagtttc tcgagctgcg aggggaagtg gaagccgatc aggatgtccc
     1921 ggcgcttggc gatgtcgtcc aactgcgcct gcggggtcgg cgtgaagatc acgtggacgt
     1981 tgggcgcaca ggcgccggaa ttcgccaccg gcgcatgcac ctcgccggcc aggtcgacga
     2041 tgcgtttggc cacgaaggcg tcgaactccg gcggcaggcc gatgaccttg acgcagatcg
     2101 catcgcggaa ccgcggatac tgatcggaca gcgcctgagg cagatgctgc agcacaaacc
     2161 gcgattccgg attgaccagc gggttcggct tctccggcgc ggtgacggtc acgccgctaa
     2221 cggcgttggc cgggttcgtg gccgtgggcg gcgccaggtg ggcggccgcc aagtgtgcgg
     2281 tgaagagggc aaggcccgcg ccgccgatgg ccagggctcg tcgcctgttc gcgtgtcgca
     2341 tggtcatgcc tctcatctaa tgccgcgtcc cgccggagct gccggtggcc ttgcggatca
     2401 cgctggcgat gcttgagcgc tgcatctcgc ccgcctcgcg cggatcgatc tgatagagcc
     2461 cggtcagcag cgccagatca ccgggcgtgg ccgcctcggg ccggtcccgg gcgtcgcagc
     2521 cctcggccat cagattgagg atcgtcggga cggcattgca gcgctccagc ccctgccacc
     2581 gcgccagcgc caggacggcg acatagtcgg cgatggcgtc gatcttctcg cccgcgacct
     2641 tgttggcgtc cgccaggatc aggctgtgga cgatctccgc gctcatcccg ttgcccagtc
     2701 ggctgccggc gcgcccggcc ggcgggacct tgccggcggc ggggtcgtag cggtccgggt
     2761 cgaacagatc gagcgtgctg accccgttgt cgcccaccga acgggtcaca taccaggcct
     2821 ggatcggccg ggtgaaccgc gacatgcgtt tcagctgtgg caggaactgg tagccgatca
     2881 ggatgtcgcg gcgcttggcg atatcgctga gctgcgcctg cggttgcggg ctgaagatca
     2941 catggatgtt gggccggcag tcggcggcgt tggcgagtgg cgcatggacc tgggacgcca
     3001 tctcgacgat gcgccgggtc acgaaggcgt cgaactcggc cgggaggcct tgaaccttca
     3061 cgcacacctt gtcgtggaag cgcggaaact gttcggagaa cgggctctcc ggcaggtgct
     3121 ggcgcacgaa ctgggtcgcc ggatcgacca gcggattggc cggctgcggc gcggtcaccg
     3181 tcacgccgct cacggtgtcg gccggattgg ccgccgcggg gggcgccaga cgggcggtgg
     3241 cgaagggtgc ggcgaacaga cccgcgccgg ccgcgcacaa cgccagggtg tgccgccaac
     3301 tcgtacgtcg catggtcatg tccctcatct agcgcctgcc cccgtcgccc gtcgtcgcct
     3361 tgcggatggc gctggcgatg gtcgcccgct gctgggagcc ggattcgcgg acgttggcgg
     3421 tgtagagccc ctccagcagc gccagatcgc cgggcgtcgc ggcctgcggc cggtcctcgg
     3481 cgtcgcagcc gtcggccatc aggttgagga tggtcggcag actgctgcag cgctccagcc
     3541 cctgccagcg cgagagcgcc agcaccgcga tgtagtcggc gaccgcgtcg attttctcgc
     3601 ccgccacctt gttggcgtcg gcgatgatca ggctgtggac cagctcggag ctcaggttct
     3661 cgccgagac
//
LOCUS       DATAJL010000498         4130 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34687,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000498 DATAJL010000000
VERSION     DATAJL010000498.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34687"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VHN39_09575"
     CDS             <1..404
                     /locus_tag="VHN39_09575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA(Ile)-lysidine synthetase"
                     /protein_id="HEX2816635.1"
                     /translation="AVPDALARFVSAACLCAAGTTRPPARERTERLAARLIETSTFVA
                     TLAGARIEAGRDRVRFRREAGETARGGLASLSLRAGETAVWDGRFEVTAERDGEVRAA
                     PRSTAPDAPSARALTLERLLAACGAIEREPA"
     gene            complement(408..1289)
                     /locus_tag="VHN39_09580"
     CDS             complement(408..1289)
                     /locus_tag="VHN39_09580"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2816636.1"
                     /translation="MSVAPSRAPTKAPRGEMVDVGGRRLHLVRAGVRNERPTIVLEHG
                     AFGCASDWAVVQERLAAKGLASLAYDRAGLGHSEPGPKPRDGKAIVSDLASLLREIDE
                     AGPFVLVGHSMGGLMVRLYTLTHTRQVLGVVLVDAVTPDVVTHPLGAKGVDAFTRILG
                     WTSHGAKLGMMRPMAMVAGDRIGLPPQASAEKRRIFGSPSHALWAAEEVSRWRATSDQ
                     ARAADFPAAMPIAVITAGAENTVTALKEMQSVPALASQNGYIEHVAGAGHANLLGRRF
                     ADPVVRGVEHVLATTRR"
     gene            complement(1310..2359)
                     /locus_tag="VHN39_09585"
     CDS             complement(1310..2359)
                     /locus_tag="VHN39_09585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009521758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2816637.1"
                     /translation="MKYNQLGRSGLFVSEICLGTMTFGGSENAGMWKAIGALQQDEVD
                     AIVGRALEAGVNFFDTADVYSFGESEKLFGQALQNLGTKRKDVVIATKVFGEMGPRPN
                     DRGASRGHIMDSVRGSLERLQTDHIDLYQIHGNDTVTPVDETLRALDDLVSQGLVRYI
                     GVSNWSAWKIAKALGLSEAKGYARFETLQAYYSIAGRDLERELVPMLTSEQLGLMVWS
                     PLAGGLLSGKFGPGSNNPEGSRRTTFDFPPVDKDRAWKCVEAMREVGEVHGVTVARVA
                     LAWLLAKPAVMSIIIGAKTLEQLDDNLAAAELTLTAEEMAKLDAVSELPSEYPGWMFA
                     RQSGSRRPKPFVKAS"
     gene            complement(2483..3901)
                     /locus_tag="VHN39_09590"
     CDS             complement(2483..3901)
                     /locus_tag="VHN39_09590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)(+) transhydrogenase (Re/Si-specific)
                     subunit beta"
                     /protein_id="HEX2816638.1"
                     /translation="MNANLAAILYLVSGVLFILALRGLSSPTTSQAGNRNGMIGMAIA
                     VGTALATLWSQGALDPLTLGLIVGGVAVGGAVGAVIARRVAMTAMPQLVAAFHSLVGM
                     AACLVAVAAIHTPAAYGILGADGAVQLKSLIELSLGLAIGAVTFTGSVIAFAKLNGNM
                     SGAPILLPARHLINLALAAGVVALVVVLVMSGGAALWAFWGVFALALILGVTLIIPIG
                     GADMPVVVSMLNSYSGWAAAALGFTLENTTLIITGALVGSSGAILSYIMCKAMNRGFI
                     SVILGGFGADDSAAAAGGKTETRPVKQGSAEDAAFIMKNASKVIIVPGYGMAVSQAQH
                     ALRETGDKLKAEGVEVKYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEDINAEFPTA
                     DVAFVIGANDVTNPAAKTDPTSAIYGMPILDVEKARTVLFVKRGMSSGYAGVENELFF
                     RDNTMMLFGDAKKMVEGILKSL"
BASE COUNT          644 a         1452 c         1411 g          623 t
ORIGIN      
        1 gcgccgtccc ggacgcgctc gcccgcttcg tctcggcggc ctgcctctgc gccgcgggga
       61 ccacacgtcc cccggcccgc gagcgcaccg agcggctcgc cgcgcggctg atcgagacct
      121 caacctttgt cgccaccctg gccggcgcac ggatcgaagc cggccgtgac cgggtccgct
      181 ttcgccgcga ggccggcgaa accgcccgag gcggtctcgc gtcgctcagc ctgagggccg
      241 gcgagaccgc ggtctgggat ggccgcttcg aggtcaccgc agagcgggat ggcgaggtcc
      301 gcgccgcgcc gcgctcgacg gcgcccgacg cgccgtccgc aagggccctg acgctcgagc
      361 gcctgctggc cgcctgcggc gccatcgaac gcgagcccgc ctagcgctca acggcgggtc
      421 gtggccagca cgtgctccac gccgcgcacc accgggtcgg cgaagcgacg gccgagcagg
      481 ttggcgtggc cggcgccggc cacatgctcg atgtagccat tctgcgaggc cagcgccggg
      541 accgactgca tctccttcag cgccgtgacg gtgttctcgg ccccggcggt gatcaccgcg
      601 atcggcatgg ccgccggaaa gtctgcggcc cgcgcctggt ccgaggtcgc ccgccagcgg
      661 cttacctcct cggccgccca cagggcatgg gagggcgagc cgaagatgcg gcgcttctcc
      721 gccgaggcct gcggcggcag gccgatgcgg tcgccggcca ccatcgccat cggccgcatc
      781 atgccgagct tcgcgccgtg gctggtccat cccagaatgc gggtgaaggc gtcgacgccc
      841 ttggcgccca ggggatgggt gacgacatcc ggcgtcaccg cgtccaccag cacgacgccc
      901 aacacctgcc gggtatgggt cagggtgtag agccgcacca tcagcccgcc catggagtgg
      961 cccaccagaa cgaagggccc ggcctcgtcg atttcacgca ggagggacgc caggtcggaa
     1021 acgatggcct tgccgtctcg gggcttgggc cccggctcgg agtgtccgag cccggcgcgg
     1081 tcataggcca ggctcgcgag ccccttggcc gccagccgtt cctgcaccac cgcccagtcg
     1141 gacgcgcagc cgaaggcgcc gtgctccagg acgatggtcg gccgctcgtt ccgaacgccc
     1201 gcgcgcacca gatgcagcct gcgcccgccg acatcgacca tctcacctct cggcgccttg
     1261 gtcggggctc tggacggggc gacggacatc ggcggctcgg gactcctggc tagctcgctt
     1321 tgacgaaggg cttgggccgg cgactgccgc tctggcgggc gaacatccag cctgggtatt
     1381 cgctggggag ttcgctgacc gcatccagtt tggccatctc ttccgcggtc aaggtcagct
     1441 cggcggcggc caggttgtcg tcaagctgct ccagcgtctt ggcgccgatg atgatgctca
     1501 tcaccgcggg cttcgccagc agccaggcga gcgccacgcg ggccaccgtg actccatgga
     1561 cctcgcccac ctcgcgcatc gcctcgacgc atttccaggc gcggtccttg tccaccggcg
     1621 gaaagtcgaa ggtggtgcgg cgcgagcctt ccggattgtt cgagcccggc ccgaacttgc
     1681 ccgagagcag cccgccggcc agcggcgacc agaccatcag gcccagctgc tcggaggtca
     1741 gcatggggac cagctcgcgc tccaggtcgc ggccggcgat ggaatagtag gcctgtaggg
     1801 tctcgaaccg cgcgtagccc ttggcctccg agaggcccag cgccttggcg atcttccagg
     1861 ccgaccagtt ggaaacgccg atgtagcgga ccagcccctg gctcacgagg tcgtccagcg
     1921 cgcgcagggt ctcgtcgacg ggtgtgacgg tgtcgttgcc gtggatctga tagaggtcga
     1981 tatggtcggt ctgcagccgc tccaggctgc cgcgcaccga gtccatgatg tggccgcggc
     2041 tcgcgccccg gtcgttggga cgcggcccca tctcgccgaa caccttggtg gcgatcacca
     2101 cgtccttgcg cttggtcccg aggttctgga gcgcctggcc gaacagcttc tcggactcgc
     2161 cgaaggaata gacgtcggcc gtgtcgaaga aattgacccc ggcctccagc gcgcggccga
     2221 cgatcgcgtc cacctcatcc tgctgcaggg ccccgatggc tttccacatg ccggcattct
     2281 cggacccgcc gaaggtcatg gtgcccaggc agatctcgga gacgaaaaga cccgagcggc
     2341 caagctgatt gtacttcatg gggcgtctcc ggtttgggga tgctccacca tatggtcagg
     2401 cggatgttgc gcgtcgaggt cggcgcgggc gcgtgtcggc aataaagctg aaaaaggcga
     2461 cagatcggcg aaggttgcgc gcctagaggc tcttcaggat accttcgacc atcttcttgg
     2521 cgtcgccgaa cagcatcatg gtgttgtcgc ggaagaaaag ctcgttctcg acgccggcgt
     2581 agcccgagct catcccgcgc ttcacgaaca gcaccgtgcg ggccttttcc acgtcgagga
     2641 tcggcatgcc gtagatggcg ctggtgggat cggtcttggc ggccggattg gtgacgtcgt
     2701 tggcgccgat cacgaaggcc acgtcggcgg tgggaaattc ggcgttgatg tcttccagct
     2761 cgaagacctc gtcgtagggg acgttggcct cggccagcag cacgttcatg tggccgggca
     2821 tgcgaccggc gaccgggtgg atggcgtact tcacctcgac gccctccgcc ttcagcttgt
     2881 cgcccgtctc gcgcaacgca tgttgagcct ggctgaccgc catgccgtag ccggggacga
     2941 tgatcacctt gctggcgttc ttcatgatga aggcggcgtc ctcggcggag ccctgcttca
     3001 ccggccgggt ctcggtcttg ccgccagccg cggcggcgct gtcgtcggcg ccgaagccgc
     3061 ccaggatcac cgagatgaag ccccggttca tggccttgca catgatgtag ctgaggatcg
     3121 cccccgacga gcccaccagc gccccggtga tgatcagggt ggtgttctcc agcgtgaaac
     3181 ccagagccgc cgccgcccag ccggagtagc tgttcagcat cgaaaccacg accggcatgt
     3241 cggccccgcc gatcgggatg atcagggtga cgcccaggat cagcgccagg gcgaagacgc
     3301 cccagaaagc ccagagcgcc gcgccgccgc tcatcaccag caccaccacc agggccacga
     3361 cgccggccgc cagggccagg ttgatcaggt ggcgcgcggg tagcaggatc ggggcgcccg
     3421 acatgttgcc gttcaacttg gcgaaggcga tcaccgagcc ggtgaaggtt accgccccga
     3481 tggccaggcc cagcgagagc tcgatcagcg acttcagctg caccgcgccg tcggcgccga
     3541 ggatgccgta ggcggccggc gtatggatcg cggccacggc caccaggcag gcggccatgc
     3601 cgacgaggct gtgaaacgcc gccaccagtt gcggcatggc ggtcatggcc acgcggcgcg
     3661 cgatcaccgc gcccaccgcg ccgccgaccg ccacgccgcc gacgatcagg cccagcgtca
     3721 aggggtcgag cgcgccctgg ctccagagcg tcgccagcgc cgtgccgacc gcgatggcca
     3781 tgccgatcat gccgttgcgg ttgccggcct ggcttgtggt gggcgaggag agcccccgca
     3841 gcgccaggat gaacaggacg ccggagacca gatagaggat ggccgcgagg ttggcgttca
     3901 cgtggctcgc cccggtgagt tagcgtctgg cgacttgcgg ggtcgcgtcc agaccctaag
     3961 gacgccatag ccaagcacca cggcgcccca gacggcgatt ccccaatctc gagattgata
     4021 ggcccgaaac agcagccaag ccgagaagcc aaccgcgccc gccacccagg cgatccgaag
     4081 gactcgttcc accctctggc gcgcaggtgg cgaaaggcgg ccgccggcca
//
LOCUS       DATAJL010000499         1818 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21506,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000499 DATAJL010000000
VERSION     DATAJL010000499.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21506"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..954
                     /locus_tag="VHN39_09595"
     CDS             <1..954
                     /locus_tag="VHN39_09595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEX2816639.1"
                     /translation="GDALRNNAMTKQSLESMLERLGINTHAADLQLNTKNIAAVMVTA
                     NLPPWGAPGTRIDVTVSSTGDAKSLLGGTLLTTPLIGMDGYAHANAQGTVQTGSVTAS
                     GASGSSISKGVPTAGRIAGGATVEMDDNFQLASMSTLRLTLRNPDFTTASRVADVINA
                     RFPGSAAALNPTIVAIHPTDGMSMVSFINQVENLTVETDAPAKVVIDEIAGVIVMSEN
                     VRISTVAIQQGNLTITVRESSQVSQPTAFSKGGTTAVVPQSDLSVDEEKGKKFVTLKS
                     GASLATMVAGLNALGVTPRDMIAILQSIKTAGALQADIEVQ"
     gene            954..1271
                     /locus_tag="VHN39_09600"
     CDS             954..1271
                     /locus_tag="VHN39_09600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod-binding protein"
                     /protein_id="HEX2816640.1"
                     /translation="MTDLTALNVSPALLTPTTGAPSAAELAKRGQIKQTAQKFETSFL
                     SVMLGQMFEGTDTPAPFGGGPGEAMFKSFLTEAMAKKMTDNGGVGIAASVQREMLKMQ
                     GLH"
     gene            1271..1714
                     /locus_tag="VHN39_09605"
     CDS             1271..1714
                     /locus_tag="VHN39_09605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body protein"
                     /protein_id="HEX2816641.1"
                     /translation="MVTTPEDAAERVEQLIALTERLTGLVADQAKSFEARRPQDAAVH
                     VEETGRLANLYRHESARIRGNPGLISSAERGQRLRLTRATEAFDAVLARQARAVGAMK
                     TVTEGLVRAIAEEVASQRNKGSSYGPGALQTPSTAATAITLNQRA"
BASE COUNT          334 a          663 c          574 g          247 t
ORIGIN      
        1 ggtgacgccc tgcgcaacaa cgcgatgacc aagcagagcc tggaatcgat gctcgaacgc
       61 ctgggcatca atacccatgc ggctgacctg cagctgaaca ccaagaacat cgcagctgtg
      121 atggtcaccg ccaatctgcc gccctggggc gcgcccggta cgcggatcga cgtgacggtc
      181 tcctcaaccg gcgacgccaa gagcctgctg ggcggcacct tgctgactac gccattgatc
      241 ggcatggacg gctatgccca tgcgaacgcc caaggcacgg tgcagaccgg gtcggtcacc
      301 gcctccggcg cctccggctc cagcatctcg aagggcgtgc ccaccgccgg gcgcatcgcc
      361 ggcggggcga cggtggaaat ggacgacaac ttccagctcg ccagcatgtc gaccctgcgc
      421 ctgacgctgc gcaaccctga cttcactacc gccagccggg tggctgacgt gatcaacgcc
      481 cgttttcccg gctccgccgc ggcgctcaac ccaaccatcg tcgccatcca cccgacggac
      541 ggcatgagca tggtgagctt catcaatcag gtggagaacc tcaccgtcga gaccgacgcg
      601 cccgccaagg tggtcatcga cgagatcgcc ggcgtcatcg tcatgagcga gaacgtgcgg
      661 atctccaccg tcgcgatcca gcagggcaac ctgaccatca cggtgcgcga gagctcccag
      721 gtgagccaac ccaccgcctt ctccaagggc ggaaccaccg ccgtggtccc gcagtccgac
      781 ctctcggtgg acgaggagaa gggcaagaag ttcgtgacgc tgaagtccgg agcctctctc
      841 gccaccatgg tggccgggct gaacgcgctg ggcgtcacgc cgcgcgacat gatcgccatc
      901 ctgcagagca tcaagaccgc cggcgcgctg caggccgaca tcgaggtgca atgatgaccg
      961 acctgaccgc gctcaacgtt tcccccgccc tgctgacgcc cacgacaggc gcgccgagcg
     1021 ccgccgaatt ggcgaagagg ggccagatca aacagacggc ccagaaattc gagacgtcgt
     1081 tcctctcggt gatgctcggc cagatgttcg agggcacgga tacgccggcg cccttcggcg
     1141 gtggtccggg cgaggcgatg ttcaaatcgt tcctcaccga ggccatggcc aagaagatga
     1201 ccgacaacgg cggggtcggc atcgccgcct ccgttcagcg cgagatgctg aagatgcagg
     1261 ggctgcactg atggtcacca cccccgaaga cgccgcagag cgcgtcgaac agctgatcgc
     1321 cctcaccgag cgtctgaccg gcctagtggc cgaccaggcc aagtcgttcg aggcccgccg
     1381 gccgcaggac gcggcggtcc acgtcgagga gaccggccgc ctcgccaacc tctaccggca
     1441 cgaatccgcc cgcatccgcg gcaatcccgg cctgatctcc agcgccgagc gcggccagcg
     1501 cctgcgcctg acccgcgcca ccgaggcctt cgacgccgtc ctcgcgcgtc aggcccgcgc
     1561 cgtgggcgcc atgaagacgg tcacggaagg cctggtccgc gccatcgccg aagaggtcgc
     1621 cagccagcgc aacaagggct cgagctatgg ccccggcgcc ctgcagaccc ccagcaccgc
     1681 ggcgaccgcc attacgctca atcagcgggc gtagctttcg cccggcggcg tgggccgggg
     1741 ttccggcttt ccggcgggac cgctcaggcg tagagtgacc ccacggaagg ctcgcagcgc
     1801 gcgccttccg ccacagcc
//
LOCUS       DATAJL010000500         2122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21511,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000500 DATAJL010000000
VERSION     DATAJL010000500.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21511"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..261
                     /locus_tag="VHN39_09610"
     CDS             <1..261
                     /locus_tag="VHN39_09610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816642.1"
                     /translation="GGGHASPDRATDVLERAVDQMPQLAPREGLRAFDVLMEDTGPAT
                     VRAAFARDWGGWGPLVVMTSPKPLSEAAVRAAMIGDKTAAAQ"
     gene            258..1136
                     /locus_tag="VHN39_09615"
     CDS             258..1136
                     /locus_tag="VHN39_09615"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2816643.1"
                     /translation="MSVARAWTALSCVATLALAGAARAADPADLTRAAEDYRAQLKAD
                     PNRPDIRAQLGEALESLGQPEAAMAEYERAIHGPGDAHRALIDRGHLLVSQGRFDEGR
                     KDFNRALSINSRDVEALTARGASWVAEGKGKKAGVAMADFSAALAIRPNDPGALNARG
                     NFYLAELKPELALADFNRALSVSPRDDVVLFNRGVAYKQLNRYDSALRDFNAVLRITP
                     GDPMTLAAKGDAYRQLGDLLLAREFYDAALKADPRNAVSWEARGEIRAALGDGSGGEA
                     DKARARKLNPSIEAQS"
     gene            complement(1169..1498)
                     /gene="hspQ"
                     /locus_tag="VHN39_09620"
     CDS             complement(1169..1498)
                     /gene="hspQ"
                     /locus_tag="VHN39_09620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HEX2816644.1"
                     /translation="MDMHSAKFAIGQVVRHRVYPFRGVIFDVDPTFSNTEEYWLSIPE
                     NIRPHKDQPFYHLLAENDESAYVAYVSEQNLLPDDTGQPVGHPQASMLFESFREGQYK
                     LRPRISH"
     gene            1661..>2122
                     /locus_tag="VHN39_09625"
     CDS             1661..>2122
                     /locus_tag="VHN39_09625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEX2816645.1"
                     /translation="MTEAPSAPGATSRGRESHQAARGAEPPCYGALDLGTNNCRLLIA
                     TPQPGGFRVIEAYSRIVRLGEGLTASGRLSEAAMERAMAALKVSAEKLRRRRVVRLRA
                     IATQACRMAENGQAFIDQVFAETGLRLQIIPPQEEARLSVAGCLNLIDRTSD"
BASE COUNT          349 a          700 c          760 g          313 t
ORIGIN      
        1 ggcggcgggc acgcctcgcc ggatcgcgcg accgacgtcc tcgagcgcgc ggtcgaccag
       61 atgccgcagc tcgcccctcg cgaaggcctg agggccttcg atgtcttgat ggaggacacc
      121 gggcccgcca ccgtccgcgc agcctttgcg agggactggg gcggctgggg cccactggtg
      181 gtgatgacct cgccgaagcc gctcagcgag gcggcggttc gcgcggccat gatcggtgac
      241 aagacggcgg ccgcccaatg agcgtcgcac gggcatggac ggcgctgtcc tgcgtggcga
      301 ccctggcatt ggccggagcg gcgcgggcgg ccgacccggc cgatcttacg cgcgccgctg
      361 aggactaccg cgcgcagctg aaggccgatc cgaaccggcc agacatccgc gcccaactcg
      421 gcgaggccct ggagtccctc ggccagcccg aggcggccat ggccgagtac gaacgggcga
      481 tccatggccc gggagatgcg caccgcgcgc tcatcgaccg gggccatctg ctggtcagcc
      541 agggcaggtt cgacgagggc cgcaaggact tcaaccgggc gctgtcgatc aattcgaggg
      601 acgtcgaggc cctgacggcc cgcggcgcga gctgggtcgc cgagggcaag ggcaagaaag
      661 ccggcgtggc catggccgac ttcagcgccg cgctggcgat ccggcccaat gaccccggcg
      721 cgctcaatgc gcggggcaac ttctatctcg ccgaactgaa gccggagctg gcgctcgccg
      781 acttcaacag ggcgctgtcg gtcagcccca gggacgacgt ggtgctgttc aaccgcggcg
      841 tcgcctacaa acagctcaat cgctacgaca gcgcgcttcg cgacttcaac gcggttctgc
      901 ggatcacgcc cggcgatccg atgacgctgg ccgccaaggg cgacgcctac cgccagctcg
      961 gcgacctgct gctggcgcgg gagttctacg acgcggcttt gaaagccgac ccgcggaatg
     1021 ccgtgtcgtg ggaggctcgc ggcgaaatcc gcgcggcgct gggcgacggg tcgggcggcg
     1081 aggccgacaa ggcacgggcg cggaagctca atccgtcgat cgaggcccag tcctgacagg
     1141 agaatgagtc gtagagccta gtggctgatc agtggctgat tctgggccgg agcttgtact
     1201 gcccctcgcg gaacgactcg aacagcatcg aggcctgcgg atggcccacc ggctggccgg
     1261 tgtcgtcagg cagcaggttc tgttcggaga cgtaggccac gtaggcgctc tcgtcgttct
     1321 cggccagcag gtggtagaag ggctggtcct tgtgcggccg gatgttctcc ggaatcgaca
     1381 gccagtactc ctcggtgttc gagaaggtcg gatcgacgtc gaagatcacg ccgcggaacg
     1441 gatagacccg gtggcgaacc acctggccga tcgcgaattt ggcgctgtgc atgtccatgg
     1501 gccgaatcta accccggtct cctgaccgga aggtgaacgt agcgttcaaa accgtccgtt
     1561 caaggctaag ccttctaaga ggcgagtggg cttgctagac tcgtagccga agtgagacgc
     1621 gcctggtgtg gccggcgtct gcgaggacgg gtagcagtcc atgacggagg cgccgagcgc
     1681 gcccggcgcc acgagtcgtg gccgggagag ccatcaagcc gcaagagggg cagagccgcc
     1741 ctgctatggc gcgctcgacc tcggcaccaa caactgccgc ctgctgatcg ccacgccgca
     1801 gcccggcggg tttcgggtga ttgaggccta ttcgcggatt gtgcggctcg gcgagggcct
     1861 gaccgcgtcc ggccgccttt ccgaggccgc catggagcgg gcgatggcgg cgctgaaggt
     1921 cagcgccgag aagctgcgcc gccgccgcgt ggtgcgcctg cgcgccatcg cgacgcaagc
     1981 ctgccgcatg gccgagaacg gtcaggcctt catcgaccag gtgttcgccg agacgggcct
     2041 caggctccag atcattccgc cgcaggagga ggctcgtctg tcggtggccg gctgcctcaa
     2101 cctgatcgac cgcacctcag ac
//
LOCUS       DATAJL010000501         1878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21568,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000501 DATAJL010000000
VERSION     DATAJL010000501.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21568"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VHN39_09630"
     CDS             complement(<1..396)
                     /locus_tag="VHN39_09630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
                     /protein_id="HEX2816646.1"
                     /translation="MNLTDPMFADADKARAHLEATRWPNGPICPHCGVVDEATNVGGK
                     AARAGCYQCNACREQFTVTVGTVFERSKVPLNKWLLATYLISSSKMGYSAHQLHRTLG
                     VTYKTAWFMAHRIREAMNPTSKTPIGGAGK"
     gene            620..1690
                     /locus_tag="VHN39_09635"
     CDS             620..1690
                     /locus_tag="VHN39_09635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEX2816647.1"
                     /translation="MVDAAEQEREQLNTGTKAVAESHKFDEASLDRWMTANVAGYAGP
                     LEVRQFKGGQSNPTYQLITPGKKYVLRRKPPGKLLPSAHAVDREYKVITALGTTGFPV
                     AKTYGLCVDDEVIGTWFYIMDMVEGRILWDQSLPQCQPAERHAIFMDKIKVLAELHNT
                     DYEAIGLADFGRPGNYMGRQVERWTKQYKASETIHIPEMEKLIEWLPRTLPEQEKTSI
                     VHGDYRLDNMIFHPTEPRVTAVLDWELSTLGDPLADFTYLLMNWINGSISTIPDQKAH
                     GIPTIEETVDYYCGLTGRKGLHDLDWFCSYNAFRLAGILQGIVGRVRDGTANSPHAAQ
                     QADRVLSLAQASWKFAQKAGAT"
     gene            complement(1687..>1878)
                     /locus_tag="VHN39_09640"
     CDS             complement(1687..>1878)
                     /locus_tag="VHN39_09640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEX2816648.1"
                     /translation="AYEESTLKFLAERAAQFDAGLVTTEKDWVRLPPEWRARITAWPV
                     VAVFDDPAALDAWLATAGL"
BASE COUNT          354 a          626 c          599 g          299 t
ORIGIN      
        1 ctttccagca ccgccgatag gcgtcttgct ggtggggttc atcgcctcgc ggatgcggtg
       61 ggccatgaac caagccgtct tgtaggtcac gcccaacgtg cggtgcagct ggtgggccga
      121 atagcccatc ttggatgacg agatcaggta ggtcgccagc agccacttgt tgagcggaac
      181 cttggagcgt tcgaacacgg tcccaacggt gacggtgaat tgttcgcggc aggcgttgca
      241 ctggtagcag cccgcgcgag ccgccttgcc gcccacgttg gtagcctcat cgaccacgcc
      301 gcaatgcgga cagatcgggc cgttcggcca gcgggtcgcc tcaagatggg cgcgggcctt
      361 gtcggcgtcg gcgaacatag gatcggtcag gttcatggcg cgtactgctt aggttgttct
      421 ggcgttcacg gccaaggttg gccgtaacga tgttatgcgc gcccagggtg tgctttgtca
      481 agtatataac tgccccgcac tgtcaagaac aaaaagagaa caaacttacc gccgttgagc
      541 gccgcgcgcc cacagcttgc ggcggctggc gcccgcccgg taaagtgggt tcaaacagat
      601 gtaagaggga cgccccgtca tggtcgacgc cgccgagcag gagcgcgagc agctcaacac
      661 cggcaccaag gccgtggcgg agtcgcacaa gttcgacgag gcttcgctgg accgctggat
      721 gaccgccaat gtggcgggct acgcggggcc cctggaggtc cgtcagttca agggcggcca
      781 gtccaacccg acctatcagc tgatcacgcc gggcaagaag tacgtcctgc gccgcaaacc
      841 cccgggcaag ctgctgccct cggcccacgc cgtcgaccgc gagtacaagg tgatcaccgc
      901 gctggggacc accggcttcc cggtggccaa gacctatggc ctctgcgtcg acgacgaggt
      961 gatcggcacc tggttctaca tcatggacat ggtcgagggc cggatcctct gggaccagag
     1021 cctgccgcag tgccagccgg ccgagcgcca cgcgatcttc atggacaaga tcaaggtgct
     1081 cgccgagctg cacaacaccg actacgaggc catcggcttg gccgacttcg gccggcccgg
     1141 caactacatg ggccgtcagg tcgagcgctg gaccaagcag tacaaggcct cggagaccat
     1201 ccacatcccg gagatggaaa agctgatcga gtggctgccg cgcacccttc cggagcagga
     1261 gaagacctcg atcgtccacg gcgactaccg gctcgacaac atgatcttcc atcccaccga
     1321 gcccagggtc accgccgtac tcgactggga gctctcgaca ctcggcgatc cgctggccga
     1381 cttcacctac ctgctgatga actggatcaa cggctcgatc tcgaccattc ccgaccagaa
     1441 ggcccacggc atcccgacta tcgaggagac cgtcgactac tactgcggcc tcaccggccg
     1501 gaagggcctg cacgacctcg actggttctg cagctacaac gccttccgcc tggccggcat
     1561 cctgcaaggg atcgtcggcc gggtgcgcga cggcaccgcc aacagccccc atgccgccca
     1621 gcaggccgac cgggtgctga gcctggccca ggccagctgg aagttcgcgc agaaggctgg
     1681 cgcgacctaa agcccggcgg tcgccagcca ggcgtcgagc gcggcgggat cgtcgaagac
     1741 ggccacgacc ggccacgcgg tgatacgcgc gcgccattcc ggcggcaggc gcacccagtc
     1801 cttctcggtg gtcacgaggc ccgcgtcgaa ctgcgccgcg cgttcggcca ggaacttgag
     1861 tgtcgattcc tcataggc
//
LOCUS       DATAJL010000502         1719 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58748,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000502 DATAJL010000000
VERSION     DATAJL010000502.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58748"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VHN39_09645"
     CDS             complement(<1..269)
                     /locus_tag="VHN39_09645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II flippase MurJ"
                     /protein_id="HEX2816649.1"
                     /translation="MIFSFFTLISRLLGFVRNLAISYFMGASATFAADAFNTALSFPN
                     LFRRIFAEGAFAAAFVPAYSRSLETDGEAVADVLAADAMAVLAAAT"
     gene            complement(421..1134)
                     /locus_tag="VHN39_09650"
     CDS             complement(421..1134)
                     /locus_tag="VHN39_09650"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEX2816650.1"
                     /translation="MKTLALGLALAVIATGALGGGAFAADKAMPADNTLTPAEASAGF
                     KLLFDGKTTAGWRGFKTPAPDAGWKVKDGVLSPDAKHSKDLVTKANYENFELTFDWKI
                     SPKGNSGVMFHVIPKGEETYESGPEYQLLDNSRGEPPLEQAAALFALYAPTQDVNKPV
                     GQFNHSRLVVDHGKAQHWLNGVKVVEYDLDSADFKARVAASKFKQWPQFATGKTGAIA
                     LQCHGDDVAFKNLKIKLLK"
     gene            complement(1146..>1719)
                     /locus_tag="VHN39_09655"
     CDS             complement(1146..>1719)
                     /locus_tag="VHN39_09655"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEX2816651.1"
                     /translation="IGVVGAATAVGAGVVVYGPKMGGERITRGYGTDPKLVKPEKAPW
                     SRIMIPAQLQTAAILADFILPASGSAPSASSLGIPDFLDEWVSAPYPDQLKDRPTVLN
                     GLNALSVQVLQAAAPARAAALSALQASSDPVAHAFWKKFRRLTIGAYYTTPEGFKDIG
                     YIGNVSRTSDPGPSAEVKTVLEREFKKLGI"
BASE COUNT          261 a          545 c          615 g          298 t
ORIGIN      
        1 gtcgccgcgg ccagcaccgc catggcgtcc gccgcaagta cgtcggccac cgcctcgccg
       61 tcggtttcca gcgagcgcga ataggccggg acgaaggccg cggcgaaggc gccctcggcg
      121 aagatccggc ggaacaggtt ggggaaggag agggcggtat tgaaggcgtc ggcggcgaag
      181 gtcgcactcg cccccatgaa atagctgatc gccagattgc gcacgaagcc cagcagccgg
      241 ctgatcaggg tgaagaagga aaagatcatc gacgagcgga agatgccgcc tgtcttcggg
      301 gcgctcgtcg tcgcgggcgt gggtttggcg gtcaaggacg tctcggggcg ctggcgagtc
      361 actggcggcg caagctagcg cgcgcggcgg gtccgcgcgc gcggcaattc cgcccggccg
      421 ctacttcagg agcttgatct tgaggttctt gaaggccacg tcgtcgccgt ggcactgcag
      481 cgcgatcgcg ccggtcttgc cggtggcgaa ctgcggccac tgcttgaact tcgaggcggc
      541 gacgcgggct ttgaagtcgg cggagtcaag gtcgtactcg accaccttca ccccgttcag
      601 ccagtgctgc gccttgccgt ggtcgaccac caggcggctg tgattgaact ggcccaccgg
      661 cttgttcacg tcctgggtcg gcgcgtagag ggcgaagagc gcggcggcct gttccagcgg
      721 cggctcgccc cgggagttgt cgagcagctg gtactccggc ccgctctcgt aggtttcctc
      781 gcccttcggg atcacgtgga acatcacgcc ggaattgccc ttggggctga ttttccagtc
      841 gaaggtgagc tcgaagttct cgtaattggc cttggtgacc aggtccttgg agtgcttggc
      901 gtccgggctg aggacgccgt ccttgacctt ccagccggca tcgggggccg gggtcttgaa
      961 gccgcgccat ccggcggtgg tcttgccgtc gaacaggagc ttgaaacccg ccgaggcttc
     1021 ggccggcgtg agcgtgttgt cggccggcat ggccttgtcc gccgcgaagg cgccccctcc
     1081 caatgctccg gtggcgatga cggcgagggc caggcccagc gcgagcgttt tcatgaccgt
     1141 catcctcaaa tcccgagttt cttgaattca cgttccagca ccgtcttcac ctcggccgag
     1201 gggccggggt cggaggtgcg cgacacgttg ccgatgtagc cgatgtcctt gaagccttcc
     1261 ggcgtcgtgt aataggcgcc gatggtcagc cgtcgaaatt tcttccagaa ggcatgggcc
     1321 acgggatcgg aggaggcctg cagggccgaa agcgccgccg cgcgcgccgg agcggcggcc
     1381 tgcagcacct gaacgctcag cgcgttgagg ccgttcagga cggtcggccg gtccttgagc
     1441 tggtccggat agggcgcgct cacccattcg tcgaggaagt ccgggatgcc gagcgaactg
     1501 gccgagggcg ccgacccgct ggccggcagg atgaagtcgg ccaggatcgc ggcggtctgc
     1561 agctgggcgg ggatcatgat ccgcgaccag ggggcctttt ccggcttcac cagcttggga
     1621 tcggtgccgt agccgcgggt gatcctttcg ccgcccatct tcgggccata gacgacgacg
     1681 cccgcgccga ccgcggtggc cgcgccgacc acgccgatc
//
LOCUS       DATAJL010000503         4763 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106869,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000503 DATAJL010000000
VERSION     DATAJL010000503.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4763)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4763)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4763
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106869"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..732
                     /locus_tag="VHN39_09660"
     CDS             <1..732
                     /locus_tag="VHN39_09660"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816652.1"
                     /translation="TVDVVHGAAPAEPLPAPTELSPVNTPGVKRRVNATIRPPLQPSP
                     IYRLGHVVLQRPDFDRAAQWYMRHLGIIPSDVQVLASGAPVLAFFRFDRGAEPSDHHS
                     VALLGAPATGLLHVSFETFDIDSVGQGHQYLRAKGWTPYWGVGRHALGSQFFDYWKDP
                     VGDEWEHYADGDVMDASVPTGYHALSRGSLWTWGDDLPDSMRPDVPLEAIPAIHADGG
                     FGEMPLERVEQLMTAMQLPPRPWMR"
     gene            732..1982
                     /locus_tag="VHN39_09665"
     CDS             732..1982
                     /locus_tag="VHN39_09665"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2816653.1"
                     /translation="MDGSSPLGADGWPVPRQADRLADDRFLPGELVKLRKETRAFADE
                     LLRPLAHELNTTPERADGFRRDVFDALADAGLFRTPFSVDVGGRGLEFPTSASLIVLE
                     ELAYYTPGVASAMYDAHVLLVGNVLDEAGGAVRATYLPGLIKGEFVGAFATSEPAAST
                     DLSPEAIQTVAVPTEGGWRVSGRKRWITNAPAADVLVLLCRTGAGLSLLLVDMGAPGI
                     TVGVPDLKMGNHAQLTADIILDNVFVPQTHLLGTEGGGLRAALGSLTLGRMGIGSVGV
                     GMAQRAFDVASAYIARRQVRGQPIAARQHWQFRFADHAMELEAARSLVQKAGRLRDDK
                     ADPGHIAAMAKIKGSRVAVDMARDAIQCCGGYGFARALEGGAALWPLEAIYRDSKIGE
                     IYEGANEVLQWVIARRIFGREITG"
     gene            2156..2794
                     /locus_tag="VHN39_09670"
     CDS             2156..2794
                     /locus_tag="VHN39_09670"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2816654.1"
                     /translation="METRQAILSAALSEFAERGYEAASIRNIGLRTGLQHPLITYHFR
                     SKEILWQAVAENAFGEIRKLWDETTEDESQVTGLEYVREKYFAFLRFTIEHPDFHHFM
                     VRESRPGNPRLPWLVQTILLPTLETLLPQIRVAQAAGDLPPGDPVMVHYMLIGMTSVL
                     SSLKDEIRQTAGIQTDDAVVVGDYMALLDAAIFRPRSSLAPATRKAAARRAK"
     gene            2897..3646
                     /locus_tag="VHN39_09675"
     CDS             2897..3646
                     /locus_tag="VHN39_09675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012279368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2816655.1"
                     /translation="MTAQSTPSPDGGSVVVAGVGALRGLGAALARRFADGGYAVVIAG
                     RNAEKLRATETALQASGLNVTAEVGDISIAADAQRFVAAAEAQGPLAAAIHNAGSNRP
                     SPFLDLSAEVFESHWREHALGGFQLAQAALPALLRTGGSLLFTGASGSLRGKANFAPF
                     ASAKGALRNLAQSLAREFGPQGVHVGHVIIDGAIEGDRLLTRLPNLKDERGPDGMLDI
                     DAIAEAFWGLHRQGRSAWTLELDLRPWREPF"
     gene            complement(3668..4129)
                     /locus_tag="VHN39_09680"
     CDS             complement(3668..4129)
                     /locus_tag="VHN39_09680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816656.1"
                     /translation="MTRLIPLAALTLSVVLGLAACAPAPAPDAGVPASRPAALVQSGD
                     HMVIGGQTVVLADAETPQAGDLANCRAEALAAEHTAAKVRALLADARQVNVDRVAKGH
                     RALVHVDGLDLGLTLISEHLAVRRGLAPMNWCASTRQWGDTTPHRAAVGPA"
     gene            complement(4271..>4763)
                     /locus_tag="VHN39_09685"
     CDS             complement(4271..>4763)
                     /locus_tag="VHN39_09685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX2816657.1"
                     /translation="HWTVRPGSTLGFTTSWSGTAVEGRFQAWTADILFSPAALDRSQV
                     KVVIDMGSAATGDVQRDASLPGEDWFAAAAHPKATFTASRFEQLGPDRYVAHGTLDLR
                     GVRKPVDLRFRLKITGDQAEMAGQASLDRTNFGVGQGTFTATDQIPAKVAVAARISAH
                     AAP"
BASE COUNT          690 a         1686 c         1687 g          700 t
ORIGIN      
        1 acggtggatg tcgtccatgg ggcggcgccg gccgagccgc tgccggcgcc caccgagctg
       61 tcaccggtca acacccccgg cgtgaagcgg cgggtcaacg ccacaatccg cccgccgctg
      121 cagccctcgc cgatctacag gctcggccat gtcgtgctgc agcgcccgga cttcgaccgc
      181 gccgcccagt ggtacatgcg ccacctgggc atcatcccgt ccgacgtcca ggtgctggcc
      241 agcggcgcgc cagtgctggc cttcttccgg ttcgaccgcg gcgccgagcc cagcgaccac
      301 cacagcgtcg ccctgctggg cgccccggcc accgggctgc tgcacgtctc tttcgagacc
      361 ttcgacatcg actccgtcgg ccagggccac cagtacctgc gggccaaggg ctggaccccc
      421 tactggggcg tggggcgcca tgccctgggc agccaattct tcgactactg gaaggacccg
      481 gtcggcgacg agtgggaaca ctatgcggac ggcgacgtga tggatgccag cgtacccacc
      541 ggctaccacg cgctcagccg cggctccctg tggacctggg gcgacgacct gccggactcc
      601 atgcgcccgg acgtgccgct ggaggcgatc ccggcgatcc acgccgacgg cggctttggc
      661 gagatgccgc tggagcgggt cgagcagctg atgaccgcca tgcagcttcc gccgcggcct
      721 tggatgcggt gatggacggt tcttcacccc tgggggccga tggctggccg gtcccgcgcc
      781 aggcggaccg gctggcggat gaccgcttcc tgcccggcga acttgtgaag ctgcggaagg
      841 agacccgcgc gttcgccgac gagctgctgc ggccgctggc ccacgagctc aacaccacgc
      901 cggaacgcgc cgacggcttc cgccgcgacg tcttcgacgc cctggccgac gcaggcctgt
      961 tccggacgcc cttctccgtc gacgtcggcg gtcgcggcct tgagttcccg acctcggcgt
     1021 cgctgatcgt tctggaagag ctcgcctact acacgccggg ggtggcctcg gcgatgtacg
     1081 acgcccacgt cctgctggtc ggcaacgtcc tggacgaggc cggcggagcc gtccgcgcga
     1141 cctacctgcc ggggctgatc aagggcgagt tcgtgggcgc gttcgccacc agcgagcccg
     1201 ccgcctccac cgacctatcg cccgaggcga tccagaccgt tgcggtcccc accgagggcg
     1261 gctggcgggt ctccggccgc aagcggtgga tcaccaacgc cccggcggcc gacgtcctcg
     1321 tgctgctctg ccggaccggc gcgggcctgt cgctgctgct ggtcgacatg ggcgcaccgg
     1381 ggatcacggt cggcgtcccc gacctcaaga tgggcaatca cgcccagctc accgcggaca
     1441 tcatcctcga caacgtcttc gtgccgcaga cccatctgct cggaaccgag ggcggcggcc
     1501 tgcgggccgc cctcggcagc ctgaccctgg ggcggatggg catcggctct gtgggtgtcg
     1561 gcatggcgca gcgcgcgttc gacgtggcgt cggcctacat cgcgcggcgg caggtgcgcg
     1621 gccagccgat cgcggcgcgc cagcactggc agttcagatt cgccgatcac gccatggaac
     1681 ttgaggccgc ccgctccctg gtccagaagg caggccggct gcgcgacgat aaggccgatc
     1741 ccgggcacat cgccgctatg gcgaagatca agggcagccg cgtcgcggtc gacatggcgc
     1801 gcgacgcgat ccagtgctgc ggcggctacg gcttcgcccg cgccttggag ggcggcgcgg
     1861 cgctctggcc ccttgaagcc atctatcgcg actcgaagat cggcgagatc tatgagggcg
     1921 ccaacgaggt gctgcagtgg gtgatcgccc ggcgcatttt tggccgcgag atcaccgggt
     1981 gagtcccccg cctgcccttc gcggcgcggg cctgctaggc tcggcggccg acgcgacgtc
     2041 cttaccgaaa ggctccgact tgccccgttc ttccgcccga tcgaacgctg ccgcctcgaa
     2101 ggccgccgtc gcggcaaagg cagccaagcg ccctcgccgc gaacagcagc gggcggtgga
     2161 gacgcggcag gcgatcctct cggcggcgct ttcggaattc gccgagcgcg gctacgaggc
     2221 cgccagcatc cgcaacatcg gcctgcgcac cggcctgcag caccccctga tcacctatca
     2281 cttccggagc aaggagatcc tctggcaggc ggtggcggag aacgccttcg gcgagatccg
     2341 caagctgtgg gacgagacca cagaggacga gagccaggtc accggcctgg aatatgtgcg
     2401 ggagaaatac ttcgccttcc tgcgcttcac gatcgagcat ccggacttcc accacttcat
     2461 ggtccgcgag agccggccgg ggaatccgcg cctgccgtgg ctggtgcaga ccatcctgct
     2521 gccgacgctg gagaccctgc tgccgcagat ccgcgtcgcc caggcggccg gcgacctgcc
     2581 gcccggcgac ccggtgatgg tgcactacat gctgatcggc atgacctcgg tgctgtcctc
     2641 cctgaaggac gagatccgcc agaccgccgg catccagacc gatgatgccg tggtggtcgg
     2701 cgactacatg gccctgctcg acgcggcgat cttccggccg cggtccagcc tggccccggc
     2761 gactcgaaag gccgcggccc gtagagccaa atagaccgct ttcgggatcg gagacggtcc
     2821 gccaggagtg catgatgaga aggctgatcc gccacgtccg tcacgccgcc agggcgcgcc
     2881 gcgaggcgtc cggacggtga ccgcgcagtc cacgccctcg cctgacggcg gttcggttgt
     2941 ggtcgccggc gtcggcgccc tgcgtggcct gggcgcggcc ctggcgcggc ggttcgccga
     3001 cggcggctat gccgttgtga tcgccggccg taacgctgag aagctgcggg ctacggaaac
     3061 ggcgctgcag gcctcgggct tgaacgtgac cgccgaggtc ggcgacatat cgatcgcggc
     3121 cgacgcccag cggttcgtgg ccgccgccga ggcgcagggg ccgctggccg cggcgatcca
     3181 taacgccggg agcaaccggc cctctccctt cctcgatcta tcggccgagg tgttcgagag
     3241 ccactggcgc gaacacgccc tgggcggctt tcagttggcc caagccgcct tacccgccct
     3301 gctgcgcacg ggcggcagcc tgctgttcac cggcgccagc ggcagcctgc gcgggaaggc
     3361 gaacttcgcg ccctttgcct cggccaaggg cgccttgcgc aacctggcgc aaagcctggc
     3421 ccgcgaattc gggccgcagg gggtgcatgt cggccacgtg atcatcgatg gcgcgatcga
     3481 gggcgaccgc ctcctgaccc gcctgccgaa cctgaaggat gaacggggtc ccgacggcat
     3541 gctcgacatc gacgccatcg ccgaggcctt ctggggcctg catcgccaag gacggagcgc
     3601 ctggactctg gaactcgatc tgcggccttg gcgggagcct ttctgagatc ggcgcggctg
     3661 ctggatgtca ggccgggcca acggccgccc gatgcggagt ggtgtcgccc cattggcgcg
     3721 tcgaggcgca ccagttcatg ggcgcgaggc cccgccggac cgccaggtgc tccgagatca
     3781 gggtgagacc gaggtcgagc ccgtcgacat gcacaagcgc ccgatgcccc ttggcgaccc
     3841 ggtcgacatt gacctggcgg gcgtccgcca gaagggcgcg gaccttcgcc gcggtgtgct
     3901 ctgcggccag cgcttcggcc cggcagttgg cgaggtcccc ggcctgaggg gtttcggcgt
     3961 cggccagaac caccgtctgg ccaccgatca ccatgtgatc gccggactgg accaatgccg
     4021 cgggccggct ggccggaacg ccggcgtcgg gcgcgggcgc cggggcgcag gcggccaggc
     4081 ccaggacgac ggaaagcgtg agggccgcga gagggatcag gcgcgtcatg ggagagctcc
     4141 cggggttggg acgcgccgta ttggcgcgtc tactccagaa cctgggcgcg cgcccgccct
     4201 tgcagtagcg ccgttatccg cgacacgacg ttccggatct gggacggagg gcttcggcgg
     4261 atggcgccgg ctaaggcgcg gcgtgcgccg agatgcgggc ggccacggcc actttggccg
     4321 ggatctggtc cgtcgccgtg aaagtcccct gcccgacgcc gaagttggtc cggtccaggc
     4381 tggcctgccc ggccatctcc gcctggtcgc cggtgatctt gaggcggaag cgcaggtcga
     4441 cgggcttgcg gacgcctcgc agatccaggg tcccgtgggc gacatagcgg tcaggcccga
     4501 gctgttcgaa ccgcgacgcc gtgaaagtcg ctttgggatg ggcggccgca gcgaaccagt
     4561 cctcgccggg cagggaggcg tcgcgctgga cgtcaccggt ggcggccgag cccatgtcga
     4621 tcaccacctt gacctgggag cggtccaggg cggccgggga gaataggatg tcggccgtcc
     4681 aggcctggaa gcggccttcc acggctgtac cgctccagct ggtggtgaaa ccgagggtgg
     4741 acccgggacg aacggtccaa tgc
//
LOCUS       DATAJL010000504         3153 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47500,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000504 DATAJL010000000
VERSION     DATAJL010000504.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3153
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47500"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..734)
                     /gene="lptC"
                     /locus_tag="VHN39_09690"
     CDS             complement(93..734)
                     /gene="lptC"
                     /locus_tag="VHN39_09690"
                     /inference="COORDINATES: protein motif:HMM:NF018537.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HEX2816658.1"
                     /translation="MTAAADMSLPTGRSPRQPHGRTSIQLWRKRSRVIAGLRILLPSL
                     IGLILVGLAGTVAYSTLAVQKVNAGNASDPIRLVNPHFVGRDSHGRPFVLTSVTATRD
                     PTNYQRVFLDKPVLVVDVDGPDPTHITGGAGVFHEDTGKLEMSKGVRLSDARGAFDTA
                     QSVFDTKTEDLVGSGPIQGLGSLGEIHAKSYGVYDKGARMVFTGNVHSRLQPK"
     gene            complement(739..1368)
                     /locus_tag="VHN39_09695"
     CDS             complement(739..1368)
                     /locus_tag="VHN39_09695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017506829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HEX2816659.1"
                     /translation="MKKAATTFLHEGDLPADALINASAVAIDSETMGLRLGRDPVCVV
                     QLSDGAGDAHVVRLDRATYDAPNLKRLLTDPAVTKIFHFGRFDIAMFWLHLGVLTAPV
                     YCTKIASKLARTYTDRHGLKDVTKELIGVDLSKAQQSSDWGAARLSEEQVAYAASDVL
                     HLHALRARLDEMLVREGRDGLARACFDFLPHRAQLDVAGWDDVDIFAHS"
     gene            complement(1551..1637)
                     /locus_tag="VHN39_09700"
     tRNA            complement(1551..1637)
                     /locus_tag="VHN39_09700"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1601..1603),aa:Leu,seq:cag)
     gene            1751..2722
                     /locus_tag="VHN39_09705"
     CDS             1751..2722
                     /locus_tag="VHN39_09705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I NDUFA9 subunit family protein"
                     /protein_id="HEX2816660.1"
                     /translation="MQNLVTVFGGSGFIGAQAVRQLAKAGWRIRVAVRNPAKAYAMRL
                     HGDVGQIDIVQANIRNLPSLRRALAGATAAVNLVGVMRETGRQGFQAIQVMGARNVAE
                     AARADGVTRLVQMSAIGADAESDSKYARTKAEGEAAVREIYPDGVIVRPSIVFGPEDD
                     FFNRFAAMAQISPVLPLIGGGQTRFQPVFVGDVGKALARAVAAPEAAGQTYELGGPAV
                     FTFRQLMEMMLAEIGKRRFLAPVPWPAASLIGAMGDLAGVVIAPPITADQVILLKTDN
                     IASGGYPGLAELGITPTTLEAVLPSYLYRYRKGGQYADQEARELAAI"
     gene            complement(2755..>3153)
                     /locus_tag="VHN39_09710"
     CDS             complement(2755..>3153)
                     /locus_tag="VHN39_09710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEX2816661.1"
                     /translation="TRKAAMALPFGTCLIIGLFQCLALVPGVSRSGATIVGAMLMGVE
                     KRVAAEFSFLLAIPVMAGAFTVDAWKSRHQLTDVSHIGLVAVGFAVSFVVAFVVIRGM
                     LAIITRRGYAPFGWLRILIGGVGLALLMAR"
BASE COUNT          529 a         1031 c         1120 g          473 t
ORIGIN      
        1 gttggcggcc gccgcggccg ccaacagggc ccgggctact ggggccgttt gggccgccat
       61 cgcgatcagg cttttcatcg acgggctcag cctcacttcg gttgcaggcg cgaatgcacg
      121 ttgccggtaa agaccatgcg cgcgcccttg tcatagacgc cataggactt cgcatggatt
      181 tctccaagcg acccaagccc ctgaatgggg cctgatccga ccaggtcctc ggtctttgtg
      241 tcaaagacgg attgggctgt atcaaaggcc ccgcgggcat cggagaggcg cacgcccttg
      301 ctcatttcca gcttgccggt gtcctcgtgg aagacgccgg ccccgccggt gatgtgggtg
      361 ggatcggggc cgtccacgtc gaccaccagg accggcttgt cgaggaagac gcgctgatag
      421 ttggtgggat cgcgggtggc ggtgaccgag gtcaggacga acggccggcc atgggaatcg
      481 cggccgacga agtgcgggtt caccagccgg atcgggtcgg aggcattgcc ggcgttgacc
      541 ttctgaaccg ccagcgtcga gtaggccacc gtcccggcca ggcccaccag gatcaggccg
      601 atcaggctgg gcagcagaat cctcaagccc gcgatgaccc gcgagcgctt gcgccagagc
      661 tggatcgagg tccgcccatg aggttgcctg ggggagcgtc cggtcggcag cgacatgtcg
      721 gcggcggcgg tcatggggtc agctgtgggc gaagatgtcg acgtcgtccc acccggccac
      781 gtccagctgg gcgcggtgcg gcaggaagtc gaaacaggcc ctggccaggc cgtcgcggcc
      841 ttcgcggacc agcatctcgt ccagccgggc ccgaagcgca tgcaggtgaa gaacgtcgga
      901 ggcggcgtag gccacctgct cctcgctgag cctggccgcg ccccagtcgg agctctgctg
      961 ggccttggag agatcgacgc cgatcagctc cttggtgacg tccttcagcc cgtgccggtc
     1021 ggtgtaggtc ctggccagct tcgaggcgat cttggtgcag tagacgggcg cggtcaggac
     1081 gcccaggtgc agccagaaca tggcgatatc gaagcgaccg aagtggaaga tcttggtcac
     1141 cgccgggtcg gtgagcagcc gcttcaggtt cggcgcatcg taggtcgcgc ggtcgaggcg
     1201 gaccacgtgg gcgtcgccgg cgccgtcgga gagctggacg acgcacacgg gatcgcggcc
     1261 caggcgcagg cccatggtct ccgaatcgat ggcgaccgcg gacgcgttga tgagcgcgtc
     1321 ggccggcaga tcgccctcgt gcaggaaggt ggtggcagcc tttttcacgc tcgctccgca
     1381 atcatcccgg ccctccatat agagagtcgg aggacgcctg ggtaaggggc gtcaggacca
     1441 tcataccgat gtcgcccgaa gaatggacgc tgtcatctgt accgatggcg ccttcaagaa
     1501 cgacggcgcc cgcgacggtg acgtccaaag gacgatatca ccgacaacgg tggtgcccag
     1561 gaaaggactc gaaccttcac ggccgttaag ccactggcac ctgaagccag cgcgtctacc
     1621 aattccgcca cctgggcccg atccgtcgga tcgcgcgagc cggcttcctt aaaggcccgg
     1681 gtcacggcgg tcaacggctg gcgatggccg gcgattgcag cgggaggcgg catcgtctat
     1741 ccgcatgccc atgcagaacc tcgtcaccgt cttcggcgga tccggcttca tcggcgccca
     1801 ggccgtgcgc cagctcgcca aggccggctg gcggatccgg gtcgcggtgc gcaatccggc
     1861 caaggcctac gccatgcggc tgcatggcga tgtgggccag atcgatatcg tccaggccaa
     1921 tatccgcaac ctgccctcgc tgcgccgcgc gctcgccggc gccacggcgg cggtgaacct
     1981 ggtgggcgtc atgcgcgaaa ccgggcggca gggcttccag gcgatccagg tgatgggcgc
     2041 gcgcaacgtc gccgaggccg cccgcgccga cggcgtcacg cgcctggtgc agatgtcggc
     2101 gatcggagcg gacgcggagt cggactcgaa gtacgcccgc accaaggccg aaggcgaggc
     2161 cgcggtgcgc gaaatctatc cggacggcgt gatcgtcagg ccctccatcg tcttcggccc
     2221 cgaggacgac ttcttcaacc gcttcgccgc gatggcgcag atcagccccg tgctgccgct
     2281 gatcggcggc ggacagaccc ggttccagcc ggtgttcgtc ggcgatgtcg gcaaggccct
     2341 ggcgcgcgcg gtcgcggcgc ccgaagcggc cggccagacc tacgagctcg gcggcccggc
     2401 ggtcttcacc ttccggcagc tgatggagat gatgctggcc gagatcggca agcgccggtt
     2461 cctggcgccc gtgccgtggc cggcggcctc gctgatcggg gctatgggag accttgccgg
     2521 cgtcgtcatc gccccgccga tcaccgccga tcaggtcatt ctgctcaaga ctgacaacat
     2581 cgccagcggg ggctatccgg gtctggccga gttggggatc acgcccacca cgctggaagc
     2641 ggtgctgccg agctacctct accgctaccg caagggcggc cagtacgccg atcaggaagc
     2701 cagagagctg gcggcgatct agccgccagg ggaagacggg gagctggcgg cgatctagcg
     2761 cgccatcagc agcgccaggc ccacgccgcc gatcaggatg cgcagccagc cgaacggggc
     2821 gtagccgcgc cgtgtgatga tcgccagcat gccgcggatc acgacgaagg ccacgacgaa
     2881 cgacacggcg aagccgacgg cgaccaggcc gatgtggctc acgtcggtga gctgatggcg
     2941 gctcttccag gcgtcgaccg tgaaggcgcc ggccatgacc ggtatggcca gcaggaacga
     3001 gaattccgcg gccacccgct tttccacgcc catcagcatg gcgccgacga tggtggcgcc
     3061 ggaccgggac acgccgggga ccagggccag gcactggaag aggccgatga tgaggcaggt
     3121 gccgaagggc agggccatgg cggctttgcg ggt
//
LOCUS       DATAJL010000505         2058 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_82499,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000505 DATAJL010000000
VERSION     DATAJL010000505.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82499"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..691
                     /locus_tag="VHN39_09715"
     CDS             <1..691
                     /locus_tag="VHN39_09715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2816662.1"
                     /translation="QTRLLRVIDGSEPALNPKTSRRPNVRIIAATNRDLRGLIQQGLF
                     REDLFFRLNVAPLRLPPLRDRVDDIPDLARAFLLRANREGLPSKTIDAAALDRLKQHP
                     WPGNVRELENLIRRICALYGEDLITARIVERELADQQPVTQGEEGPATLAQLVERKLS
                     SYFADQPDGLPPAGLYDRVLEEVERPLIQLTLSATRGNQVRAAEILGLNRNTLRKKIS
                     DLGVEMQRGRR"
     gene            769..>2058
                     /locus_tag="VHN39_09720"
     CDS             769..>2058
                     /locus_tag="VHN39_09720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEX2816663.1"
                     /translation="MALDIRQRLAGAGDWRIWRVMQSRAVLGVGYGLAAALTALAILL
                     AASPPSTGSLGPASQLILTVLGLNLILILGLTLVVIRRFWVLIDARDRDPGARLQLRF
                     VTMFALVALVPAIVVALFYGVLVTRGVDNWFSSRVTTVVNNSAILARSYVEEQRIYIS
                     NHLIPMGADLNHAAPALAASPITFNHFLGDLTNFHGFSAGYLIDRDGRVLARAEAADA
                     PPLVIPPPASFKAADENIISICNVNCGDAMSAVYKLRAYPDAYLYVIRPVEKGIVGHL
                     LESEASLIDFNAAAQNRQKIQTIFILSYAETALLVLVGAVWLGLSAANTISGPVARLV
                     QAAGKVAGGDLSARVDADSDPEEIAVLSRAFNSMTHDLQAQQEAIRAAHEDAERRRQF
                     IETVLAEVSAGVIGLDARGRISAANRQAELLLGLSSNP"
BASE COUNT          319 a          747 c          655 g          337 t
ORIGIN      
        1 ccagacccgc ctgctgcggg tgatcgacgg ctccgagccg gcgctcaatc cgaagaccag
       61 ccgccggccc aatgtccgga tcatcgccgc caccaaccgg gacctgcggg gcctgatcca
      121 gcaagggctg ttccgcgagg acctgttctt ccgcctgaac gtggccccgc tgcgcctgcc
      181 gccgctgcgt gatcgcgtgg acgacattcc ggacctggcc cgcgccttcc tgctgcgcgc
      241 caaccgcgag ggcctgccgt ccaagaccat cgacgcggcc gccctggatc ggctgaagca
      301 gcacccgtgg cccggtaatg tccgagagtt ggagaacctg atccgccgca tctgcgccct
      361 ctatggcgag gacctgatca ccgcccggat cgtcgagcgc gagctggccg accagcagcc
      421 ggtgacccag ggtgaggagg ggcccgcgac gctggcccag ctcgtggagc gcaagctctc
      481 cagctatttc gcggaccagc ccgatggcct gccgccagcc ggtctctacg accgcgtgtt
      541 ggaagaggtg gaacgcccgc tgatccagct caccctgtcg gccacccgcg gcaaccaggt
      601 gcgcgctgcc gagattctcg ggcttaaccg caacactctg cgcaagaaga tctccgacct
      661 gggcgttgag atgcagcgag gccgacgcta gcggccctcg gcccacgctg acgcttcctt
      721 gcaacaagac tgttgagttt ggggcacagt cgcttaggct cccccgcaat ggccttggat
      781 attcgacagc ggctcgccgg cgccggcgac tggcgcatct ggcgggtgat gcagtcccgc
      841 gcggtgctgg gcgtaggcta cggcctggcc gcggcgctga cggcgctcgc catcctgctg
      901 gccgcctcgc ccccgtccac cggttcgctg ggccccgcca gccaactgat tctcacggtc
      961 ctgggcctca acctgatcct gatcctgggc ctgactctgg tggtcatccg ccggttctgg
     1021 gtgctgatcg acgcccggga ccgcgacccg ggcgcgcgtc tgcagctgcg tttcgtcacc
     1081 atgttcgccc tggtggccct agtgcccgcc atcgtcgtcg ccctgttcta tggcgtgctg
     1141 gtcacccgcg gcgtcgacaa ctggttcagt tcgcgggtga cgaccgtcgt caacaactcc
     1201 gccattctgg cgcgctccta tgtggaggag cagcgaatct acatcagcaa ccacctgatc
     1261 cccatgggcg ccgacctgaa ccacgccgcc ccggcgctgg ccgccagccc gatcaccttc
     1321 aatcacttcc tgggcgacct gaccaacttc cacggcttct cggccggcta cctcatcgac
     1381 cgcgacgggc gggtgctggc gcgcgccgag gccgccgatg cgccgccgct ggttatccca
     1441 ccacccgcca gcttcaaggc ggcggacgag aacatcatct cgatctgcaa cgtgaactgc
     1501 ggcgatgcga tgagcgcggt ctacaagctg cgcgcctatc cggacgccta tctctatgtg
     1561 atccggccgg tggagaaggg gatcgtcggc cacctcctgg agtccgaagc cagtctgatc
     1621 gacttcaacg ccgcggccca gaaccgccag aagatccaga ccatcttcat cctgagctac
     1681 gccgagaccg ccctgctggt gctggtgggc gcggtttggc tggggctgag cgcggccaac
     1741 accatctccg ggccggtcgc gcggctggtg caggcggccg gtaaggtggc gggcggcgac
     1801 ctcagcgccc gggtcgacgc tgacagcgac cccgaggaaa tcgccgtctt gtccagagcg
     1861 ttcaatagta tgacgcatga tcttcaggcc caacaggaag cgatccgcgc ggcccatgag
     1921 gacgccgagc gccgtcgcca gttcatcgag accgtgctcg ccgaggtcag cgccggggta
     1981 atcggcctcg acgcccgcgg ccggatctcc gccgccaacc gccaggccga actgctgctg
     2041 ggcctgtcga gcaacccg
//
LOCUS       DATAJL010000506         9090 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21655,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000506 DATAJL010000000
VERSION     DATAJL010000506.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9090)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9090)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9090
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21655"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1390
                     /locus_tag="VHN39_09725"
     CDS             <1..1390
                     /locus_tag="VHN39_09725"
                     /inference="COORDINATES: protein motif:HMM:TIGR01317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEX2816664.1"
                     /translation="SRLKTWKEFVRPLPLPQVSEQAARCMDCGIPFCHQGCPVNNQIP
                     DFNNLVYRDQWRQALDNLQSTNNFPEFTGRVCPAPCEASCTLNIDDNPVTIKTIECQI
                     VDRGWDEGWITPQMSPRGTGKRIAVVGSGPAGLACAQQLARAGHAPTVFEKSDRIGGL
                     LRYGIPDFKMEKHLIDRRIRQMEAEGVIFRAGFEVGVTVSVQRLLDDYDVLVMAGGAE
                     AGRDLEVPGRELSGVHYAMEFLTQQNKRNAGDPEAVAAPTGTLSAAGKHVVVIGGGDT
                     GSDCIGTSNRHGAASVTQLEIMPQPPERENKALTWPDWPLKLRTSSSQEEGCDRDFAV
                     ITKRALGQDGRITELECAHVEWAAGEDGRMQMREVEGSTFSLKADLVLLAMGLTGPRT
                     TCVIESSGVELDPRGNVKANVSDYQTSVRNIFTCGDMRRGQSLVVWAIREGRQCARAV
                     DEALMGASKLPR"
     gene            1441..2295
                     /locus_tag="VHN39_09730"
     CDS             1441..2295
                     /locus_tag="VHN39_09730"
                     /EC_number="3.1.1.99"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX2816665.1"
                     /translation="MDVRCVVNAQDQLGEGPCWSPLEGRLYWFDIKGKRLAWYEPRTE
                     ESGSFDLPMRASAAAPRAQGGLILATEKGLAACDPVAGTVEMLRPFALPEGFRTNDGK
                     IDLDGNFWWSTMDDNHGKRPGAVFRTTPDLHTERMLEGIHIPNTISMSADKKTLYVAD
                     SSLQTIFAHQIDDLTKISRFAHTAGQPGSPDGSAVDAHGYLWNAQWGGWEVVRYTPEG
                     RTDMTIKMPVQQPSSCAFGGADLTTLYVTSAWDDLTPEKRAQQPLAGGLFAIETGVKG
                     LALPLFEG"
     gene            2305..4029
                     /locus_tag="VHN39_09735"
     CDS             2305..4029
                     /locus_tag="VHN39_09735"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IlvD/Edd family dehydratase"
                     /protein_id="HEX2816666.1"
                     /translation="MAKPPLRSASNFGKHDRDGFVHRSWIKATGLPDHVFDGRPIIGI
                     ANTWSELVTCQVGLRDLADFVKRGVWEAGGVPIEFPAMSLPETQMRPTAMLFRNLLAM
                     EVEESIRANPIDGVVLMGGCDKTTPGLLMGAASVDIPAIFVSSGSMLNGKFEGRDIGS
                     GTDVWRFSEAVRAGEMSLDEFMSAESGMSRSAGVCNTMGTASTMASLTEALGISLPNN
                     AALPAVDSRRKVLAHMSGNRIVQLVKDDIKPSDIMTRQAFENAILLHAALGGSTNAVV
                     HLLALAGRLGVPLSLKDFDEIARDAPLLVNLMPSGKYLMEDFCYAGGVPAVAKELGPL
                     YRRDVVTVSGKTQGQIADAAKVWSREVIGSLEAPIGPSSGVWVLKGNLCPQGAILKPS
                     AATPALLTHTGRAVVFEDIEDYHARIDDPGLDVDASSILVLKGCGPKGYPGMPEVGNM
                     GLPPKVLATGVTDMVRISDARMSGTAYGTVILHVAPEAAAGGPLALVQNGDEIAFDGP
                     NRSLQLLVDEAELARRRAAWEAARKPSEYTRGWYKLYIDTVLQADAGVDLDFLVGKSS
                     PDVTRESH"
     gene            4029..4784
                     /locus_tag="VHN39_09740"
     CDS             4029..4784
                     /locus_tag="VHN39_09740"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2816667.1"
                     /translation="MAGYASYPSLRDRTVFVTGGASGIGAAFVQAFHDQGCKVGFIDL
                     DEAAGRALSASLGPASWFARCDVTDAQALQAAIRDAAAALGPITVLINNVANDTRQVA
                     AEVTPEIWRETLAVNLDPAFIAATAVYPMMQAAGGGAIVNLSSITALLGPGDLAAYSA
                     AKGAINALTKALAHAWGVDRIRVNAISPGWVITPRQQALWLTPEAEADWTRLAALKDR
                     IMPQDIARAALFLASDDSRMMTGQNLIVDAGRT"
     gene            4884..5117
                     /locus_tag="VHN39_09745"
     CDS             4884..5117
                     /locus_tag="VHN39_09745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816668.1"
                     /translation="MVQTGIERARALAQNLVEILTSYEEELMSLEREAPAMGQLRRAV
                     GITIAEACYMITDQGIAQAEWAPPSDGRASPAS"
     gene            5143..5523
                     /locus_tag="VHN39_09750"
     CDS             5143..5523
                     /locus_tag="VHN39_09750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2816669.1"
                     /translation="MARKPEALADPIDIAVGARIRLLRKVRGLSQQALAEAAGVTFQQ
                     IQKYERGANRVSASMLSRIATTLQAPVAEMFGEVNPASGAIDEVAGLLAEPGALELLR
                     AYSLLPRGVSRAALVEFVRSLKPV"
     gene            complement(5527..7161)
                     /locus_tag="VHN39_09755"
     CDS             complement(5527..7161)
                     /locus_tag="VHN39_09755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2816670.1"
                     /translation="MSSWTFADVWEAIAGVQPDHPAFIQGDRVLTWSQFDARADALAA
                     HMIDAGLDRQAKVAAFLYNGPEYLESYYAAFKAGFAPVNTNYRYGPEELFYLFDNADA
                     QAVVFHSGFAEVLETIRGRLTGVKAWIAVAEPGHPVPAWASDYDAIVAKLPDQRPVTA
                     PWGRSSDDLLLLYTGGTTGMPKGVMWAQDDLFNVIGAGGNALLGIPPAVDIPDLIARI
                     TSPEHLRPTTLIACPLMHGTGQFSNLISFNQGGTAAYLPSRRFNAMELWDETDRLAAS
                     NIVIVGLAFSTPMLEALEANPGRWDLSTVKAMSSSGSMWSQENKQGLLSFAKNAMIFD
                     SFGSSEAVGLGVSASAPGAEAKTAAFVAGPNCVVFTEDGRRVQPGSGERGLVAVSGLL
                     PRGYYKDQEKTDKTFKLMEGVLWSVPGDWAEVNADGSLKLLGRGSVCINTGGEKVFPE
                     EVEEALKTHLAVRDAVVVGLPDPRFGERICAVVETDGVTQPTLDELSEHVRAHLAGYK
                     APRDLVLVDSIGRAPNGKVDYKAIKDRAIAALGVSA"
     gene            complement(7249..7710)
                     /locus_tag="VHN39_09760"
     CDS             complement(7249..7710)
                     /locus_tag="VHN39_09760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2816671.1"
                     /translation="MALVLDPIDRRILRELQADATVPIAELAERAGLSQTPCWKRVKR
                     LTDAGVIERRVAILDRDQLDLGLVVFVSIRTSRHDEDWLNAFAKGAAGLPEVVEFYRM
                     SGETDYLLKVVVRDIAAYDAFYKRLIAAAPLQDVSSSFAMEQIKFTTALPI"
     gene            7866..8468
                     /locus_tag="VHN39_09765"
     CDS             7866..8468
                     /locus_tag="VHN39_09765"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2816672.1"
                     /translation="MAMRYSDTRKEETRRKVVRAAAAAVRARGPDGVGVSEIMAEVGL
                     THGGFYAHFPNKEALIAAAVTEAFDQGRRRFGRLTGNRGGIDALATYIDAYLTLDHRA
                     QPERGCPLAAIASELPRQGPSVRAVFDAGVIELINRIADCLPIGGDDDRRDLAGSLVA
                     EMAGAVSLSRAICDDAVAARFLEQSRRRIRTRAGLPSPRP"
     gene            8746..9006
                     /locus_tag="VHN39_09770"
     CDS             8746..9006
                     /locus_tag="VHN39_09770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SWIB/MDM2 domain-containing protein"
                     /protein_id="HEX2816673.1"
                     /translation="MAEAKKTNALQKPLTPSPELAAVVGPGMLSRGEVVSKIWVYIKK
                     NNLQDPKNKRDILADAKLKPVFGGKDKVSMFEMNKHLAGHLK"
BASE COUNT         1512 a         3115 c         3046 g         1417 t
ORIGIN      
        1 ttcgcgcctg aagacctgga aggaattcgt ccggccgctg ccgctgccgc aggtgagcga
       61 acaggccgcg cgctgcatgg attgcggaat cccgttctgc caccagggat gcccggtcaa
      121 caatcagatc ccggacttca acaacctggt ctaccgcgac cagtggcgtc aggcgctgga
      181 caacctgcag tccaccaaca acttcccgga gtttaccggc cgggtttgcc ccgcgccctg
      241 cgaggcctcc tgcacgctga acatcgacga caacccggtg accatcaaga ccatcgagtg
      301 ccagatcgtc gaccgcggat gggacgaggg ctggatcacg ccccagatgt cgccgcgcgg
      361 caccggcaaa cgcatcgcgg tggtgggctc gggccccgcg ggcctggcct gcgcccagca
      421 actggcccgc gccggccatg cgcccaccgt cttcgagaag tccgaccgga tcggcggcct
      481 gctccgctac ggcatccccg acttcaagat ggaaaagcac ctcatcgacc ggcgcatccg
      541 gcagatggag gccgagggcg tgatcttccg cgccggcttc gaggtcggcg tcaccgtctc
      601 ggtgcagcgg ctgctggacg actacgacgt gctggtgatg gccggcggcg ccgaggcagg
      661 ccgcgacctg gaggtcccgg gccgcgaact ctcgggcgtc cactacgcca tggaattcct
      721 cacccagcag aacaagcgca acgccggcga tccggaggcc gtcgcggccc ccaccggcac
      781 gctgtcggcg gccggcaagc atgtggtggt gatcggcggc ggcgatacgg ggtcggactg
      841 catcggcacc tccaaccgcc acggcgcggc ctcggtcacc cagctcgaga tcatgccgca
      901 gccgccggag cgcgagaaca aggcgctcac ctggcccgac tggccgctga agctgcgcac
      961 ctcgtcgagc caggaagagg gctgcgaccg cgacttcgcc gtcatcacca aacgcgcgct
     1021 cggtcaggac ggccggatca cggagctgga atgcgcgcac gtcgaatggg cggcgggcga
     1081 ggacggccgg atgcagatgc gcgaagtcga gggctcgacc ttcagcctga aggccgatct
     1141 ggtgctgctg gccatgggcc tcaccgggcc gcgcacgacc tgcgtgatcg aaagcagcgg
     1201 ggtggagctc gacccgcgtg gcaacgtcaa agccaacgtc tccgactatc agacctcggt
     1261 gcgcaacatc ttcacctgcg gcgacatgcg gcgcggccag tccctggtgg tctgggcgat
     1321 ccgcgagggc cgccagtgcg cgcgcgccgt cgacgaggcc ctgatgggcg cctcgaagct
     1381 gccccgctag actgcgccgg agtcgggatg cgtccggaca ggttttgagc ggaggcgtcc
     1441 atggacgtgc gttgcgttgt gaatgcccag gatcagcttg gtgaaggccc ctgctggtcg
     1501 ccgcttgagg gccggctcta ctggttcgac atcaagggca agcggctcgc ctggtacgag
     1561 cccaggaccg aggagagcgg ctcgttcgac ctgcccatgc gcgccagcgc ggcggccccg
     1621 cgcgcccagg gcggcctgat cctggcgacg gaaaagggtc tcgcggcttg cgatccggtg
     1681 gccggcacgg tcgagatgct gcgccctttc gccctgcccg agggcttccg caccaacgac
     1741 ggcaagatcg acctcgacgg caatttctgg tggtcgacca tggacgacaa ccacggcaag
     1801 cggccgggcg cggtcttccg caccacgccg gacctgcaca ccgagcggat gctggagggg
     1861 atccacatcc ccaacaccat ctccatgagc gccgacaaga agacgctcta cgtggccgat
     1921 agcagcctgc agacgatctt tgctcatcag atcgacgacc tcaccaagat cagccgcttt
     1981 gcccacacgg ccggccagcc cggaagcccc gacggttcgg cggtcgatgc gcacggctac
     2041 ctctggaacg cccaatgggg cggatgggag gtcgtccgtt acacgccgga aggccgcacc
     2101 gacatgacca tcaagatgcc cgtccagcag ccctccagct gcgctttcgg gggcgcggac
     2161 ctgacgacgc tctatgtgac cagcgcctgg gacgatctga caccggaaaa gcgcgcccag
     2221 cagccgctcg ccggcggcct cttcgcaatc gaaaccggcg tgaaagggct ggcgctgccg
     2281 ctctttgaag ggtgaggtaa gcccatggcc aaaccacccc tgcgcagcgc cagcaacttc
     2341 ggcaagcacg accgcgacgg cttcgtgcac cgaagctgga tcaaggccac cggcctgccg
     2401 gaccacgtct tcgacggccg cccgatcatc ggcatcgcca acacctggtc ggagctggtg
     2461 acgtgccagg tgggcctgcg cgacctcgcc gacttcgtga agcgcggggt ctgggaggcg
     2521 ggcggcgtgc ccatcgagtt cccggccatg tcgctccccg agacccagat gcggcccacg
     2581 gccatgctct tccggaactt gctggccatg gaggtcgagg agtcgatccg cgccaatccc
     2641 atcgacggcg tcgtcttgat gggcggctgc gacaagacca cgccgggcct cttgatgggg
     2701 gcggccagcg tcgacatccc ggcgatcttt gtctcctcgg gctcgatgct gaacggcaag
     2761 ttcgaaggcc gcgatatcgg ctccggcacc gacgtctggc gcttctccga ggcggtacgg
     2821 gccggcgaaa tgagcctcga tgagttcatg agcgccgaaa gcggcatgag ccgctctgcg
     2881 ggcgtctgca acaccatggg cacggcctcg accatggcca gcctcaccga ggcgctgggc
     2941 atttcgctgc ccaacaacgc cgcgctgccg gcggtcgaca gccgccgcaa ggtgctggcc
     3001 cacatgagcg gcaaccgcat cgtccagctg gtgaaggacg acatcaagcc gtcggacatc
     3061 atgacccgcc aggccttcga gaacgccatt ctgctgcatg cggccctggg cggctcgacc
     3121 aatgcggtgg tgcacctgct ggctctggcc gggcgcctgg gcgtgccgct cagcctcaag
     3181 gacttcgacg agattgcccg cgacgcgccg ctgctggtca acctgatgcc gtccggcaaa
     3241 tacctgatgg aggacttctg ctacgcgggc ggcgtgccgg cggtggcgaa ggagttaggc
     3301 cctctctacc gccgcgacgt ggtgaccgtc tcgggcaaga cgcaagggca gatcgccgac
     3361 gccgccaagg tctggagccg cgaggtgatc gggtcactcg aggcgccgat cgggccctcg
     3421 tccggcgtct gggttctgaa gggtaacctc tgcccgcaag gcgcgatcct gaagcccagc
     3481 gccgccaccc cggccctgct cacccacacc ggtcgcgccg tggtcttcga ggacatcgag
     3541 gactaccacg cccgcatcga cgacccgggc ctggacgtgg acgccagttc gatcctggtg
     3601 ctgaagggct gcggacccaa gggctatccg gggatgccgg aggtcgggaa catgggcctg
     3661 ccgcccaagg tgctggccac cggcgtcacc gacatggtcc gaatctccga cgcccggatg
     3721 agcggcacgg cctatggcac ggtcatcctg cacgtggcgc ccgaggccgc ggcgggtggg
     3781 ccgctggcgc tcgtccagaa cggcgacgag atcgccttcg acggcccgaa ccgctcgctg
     3841 cagctcttgg tggacgaggc cgagcttgcc cgccgccgcg ccgcctggga ggccgcccgc
     3901 aagccatccg agtacacgcg cggatggtac aagctttaca tcgacactgt cctgcaggcg
     3961 gacgccgggg tcgatctcga cttcctggtg ggcaagtcgt cgcccgacgt gacccgtgaa
     4021 tcccattgat ggccggatac gcgtcctatc cgagcctgag ggaccgcacg gtgttcgtca
     4081 ccggcggcgc gtcggggatc ggcgcggcct tcgtccaggc cttccacgat cagggctgca
     4141 aggtaggctt catagacctg gacgaggcgg cgggcagggc gctttcggct agcctcggac
     4201 cggcctcctg gttcgcccgc tgcgacgtca ccgacgcgca ggccctgcag gccgcgatcc
     4261 gcgacgccgc cgcggcgctg ggccctatca cggtcctgat caacaacgtc gccaacgaca
     4321 cccgccaggt cgcggccgag gtcacgcccg agatctggcg cgagaccctg gcggtcaacc
     4381 tcgacccggc cttcatcgcc gcaacggcgg tctacccaat gatgcaggcg gccggcggcg
     4441 gcgcgatcgt caacctcagc tcgatcaccg cgctgcttgg gccgggcgac ctggcggcct
     4501 attccgcggc caagggcgcg atcaacgcgc tcaccaaggc cctggcccac gcctggggcg
     4561 tcgaccggat ccgcgtcaat gcgatctcgc ccggctgggt gatcacgccg cgccagcagg
     4621 cgctgtggct gacgcccgag gcggaggcgg actggacccg gctggcggcg ctgaaggacc
     4681 ggatcatgcc gcaggacatc gcccgcgccg cgctgttcct ggcctccgac gacagccgca
     4741 tgatgaccgg ccagaacctg atcgtggacg ctggccgcac ctgaccgtcc cgtcacgtgg
     4801 cgcaagcctc gcgcgtcgcg tgcaggcggt tgcattcgtg cgcccgatgc tcaaggctct
     4861 ctccggggct tggggggaat gtgatggtcc agacgggtat cgaacgagcc agggcgctag
     4921 ctcaaaatct ggtggaaatt ctgacctctt atgaagagga attgatgtcg ctcgaacggg
     4981 aggctccggc catgggccag ctgcggcgcg cggtgggaat caccatagcc gaggcttgct
     5041 atatgatcac cgaccagggc attgcgcagg cggagtgggc gccgccttcc gatggccgcg
     5101 ccagccccgc cagctagttc agtaagaggt ttcccgaaca ccatggcccg caaacccgag
     5161 gctctagccg atcccatcga catcgcggta ggcgcgagga tccggctgtt gcgcaaggtc
     5221 cgggggctgt cccagcaggc gctcgccgag gccgccgggg tcaccttcca gcagatccag
     5281 aagtatgagc gcggcgcgaa ccgggtctcg gcctccatgc tctcacgcat cgccacgacc
     5341 ttgcaggcgc cggtcgccga gatgttcggc gaggtcaatc cggccagcgg ggccatcgac
     5401 gaagtcgcgg ggctgctggc cgagcccggt gcgcttgaac tcctgcgcgc ctactccctg
     5461 ctgccccgcg gcgtctcccg cgccgccctg gtcgagttcg tccgcagcct gaagcccgtc
     5521 tgaaccttag gccgacacgc ccaaggcggc gatcgcgcgg tccttgatgg ccttgtagtc
     5581 gaccttgccg ttgggggccc ggccgatgct gtccaccagc accagatcgc gcggcgcctt
     5641 gtagccggcc aggtgcgcgc gcacgtgctc tgagagttcg tcgagagtcg gctgggtcac
     5701 gccgtcggtc tcgaccactg cgcagatccg ctcgccgaag cgcgggtcgg gcaggcccac
     5761 caccacggcg tcgcgcacgg ccaggtgggt cttgagcgcc tcttccactt cttccgggaa
     5821 gaccttctcg ccgccggtgt tgatgcagac cgagccgcgg ccgagcaact tgaggctccc
     5881 gtcggcgttc acctcggccc agtcgccggg cacgctccac agcacgccct ccatgagctt
     5941 gaaggtcttg tcggtctttt cctggtcctt gtagtaaccg cgcggcagga ggcccgagac
     6001 cgccaccagc ccgcgctcgc ccgacccggg ctgcacgcgc cggccgtcct cggtgaacac
     6061 cacgcagttg gggccggcca cgaaggccgc cgtcttcgcc tccgcgcccg gggccgaggc
     6121 cgagacgccc aagcccaccg cttcggacga gccgaagctg tcgaagatca tggcgttctt
     6181 ggcgaagctc agcagaccct gcttgttctc ctggctccac atggagcccg acgagctcat
     6241 cgccttgacc gtcgacaggt cccagcggcc cggattggcc tccagcgcct ccagcatcgg
     6301 ggtggagaac gccagaccga cgatgacgat gttgctggcc gccagccggt cggtctcgtc
     6361 ccacagctcc atggcgttga accggcgcga cggcaggtaa gcggccgtgc cgccctgatt
     6421 gaaggagatc aggttggaga actggccggt gccgtgcatc agcggacatg cgatcagcgt
     6481 ggtcgggcgc aaatgctccg gcgaggttat gcgcgcgatc aggtcgggga tgtcgaccgc
     6541 cggcggaatg cccaagagcg cgttgccgcc ggcgccgatc acattgaaga ggtcgtcctg
     6601 cgcccacatc acgcccttgg gcatcccggt ggtgccgccg gtgtagagca gcagcaggtc
     6661 atcactggag cggccccagg gcgccgtcac cggccgctgg tccgggagct tggcgacgat
     6721 ggcgtcgtag tcgctggccc aggccggaac cggatggccg ggctcagcca ccgcgatcca
     6781 ggccttcacg ccggtcaggc gtccgcggat ggtctccagc acttcggcga accctgaatg
     6841 gaagaccaca gcctgggcgt cggcgttgtc gaacaggtag aacagctctt ccggcccata
     6901 gcggtagttg gtgttcaccg gcgcgaagcc agccttgaag gctgcgtagt agctctcgag
     6961 gtattcgggt ccgttgtaga ggaaggccgc aaccttggcc tggcggtcga ggccggcgtc
     7021 gatcatgtga gccgccagcg catcggcccg ggcgtcgaac tggctccagg tcagcacgcg
     7081 gtcgccctgg atgaaggccg gatggtccgg ctggaccccg gcgatcgcct cccacacgtc
     7141 cgcgaaggtc caagaactca ccgcgatcct cccagatagt cttctcgttg gggcgaattg
     7201 ggcggtgttg gcgccccgta agtcaacagg cgtaagtcaa cagtccgatc agatcggcag
     7261 cgccgtcgtg aacttgatct gctccatggc gaaggatgag ctgacgtcct gcagcggcgc
     7321 ggcggcgatc aggcgcttgt agaaggcgtc gtaggcggcg atgtcgcgga ccaccacctt
     7381 caagagatag tccgtctcgc cggacatccg gtagaactcc accacctctg gcaggcccgc
     7441 cgcgcccttg gcgaaggcgt tcagccagtc ctcgtcgtgg cggctggtgc ggatcgagac
     7501 gaacaccacc aggcccaggt ccagctgatc gcggtcgagg atcgctacgc gccgctcgat
     7561 caccccggcg tcggtcagcc gtttcacacg cttccagcag ggggtctgcg acagcccggc
     7621 ccgctcggcc agctcggcga tgggcacggt ggcgtcggcc tgtagctcgc gcagaatccg
     7681 gcggtcgatc gggtcgagaa caagcgccat gcactgagcc tcgtcgtgag aatcctgttc
     7741 taccgtggga gtggtccgcg cgccagatcg gctaccgatg gcgggtgagg gaggtcagcg
     7801 ggtcacgtca gtcacggcct tgcggccgct gggtcgtgac attacgatca tcatataaaa
     7861 tgggaatggc gatgcgctac agcgacacac gcaaggaaga gacccggagg aaggttgtgc
     7921 gcgccgccgc cgccgccgtg cgcgccaggg gccccgacgg cgtaggtgtc tctgagatca
     7981 tggccgaggt cggacttacc cacggcggtt tctacgccca cttccccaac aaggaggcgc
     8041 tcatcgccgc ggcggtgacc gaggctttcg atcagggccg ccgacgcttc gggcgcctca
     8101 ccggaaatcg gggtgggatc gacgccctgg cgacctacat cgacgcctat ctcaccctcg
     8161 atcaccgggc ccagcccgaa cggggctgcc cgctggccgc catcgcgtcc gaactgccgc
     8221 ggcaaggccc gtcagtcagg gctgtcttcg acgccggagt aatcgagctg atcaaccgca
     8281 tcgccgattg cctgccgatt gggggcgacg acgaccgccg ggatctggct ggctcgctgg
     8341 tggcggagat ggccggggcg gtgtcgctct cccgcgcgat ctgcgacgat gctgtcgcgg
     8401 cgcgcttcct ggaacagtcc cgccgccgca tccgcacacg ggcgggtctc ccgtcgcccc
     8461 gaccctgagc aaccggggcc ctgcgcgact tcgacccggt gcgtctgcga ttcgacgccg
     8521 gccagccgga actggccaaa tcgcgccccg gcctctcggc gagggtcacg gtagcgttat
     8581 caaacggcgc ttaaatcgtt gttttgcctg ctctcgggca cttcttgcgt ttctctaggt
     8641 gacgcggggc gcattgcgct cctaggatac caccaagcga ctcacttcac gcacttccga
     8701 cgtgtggccg tagacgccta aaatctagct gggggagccc aacaaatggc cgaagccaaa
     8761 aagaccaatg ccctgcaaaa gccgctcacg ccgtcgccgg aactggccgc tgttgtcggt
     8821 ccggggatgc tgtcccgcgg tgaagtcgtc tcgaagatct gggtctacat caagaagaac
     8881 aacctgcagg atccgaagaa caagcgcgac atcctggccg acgccaagct gaagcctgtt
     8941 ttcggcggca aggacaaggt cagcatgttc gagatgaaca agcatctggc cggccacctc
     9001 aagtaggcgg catatcgcgc ggcggcttgg ccgtcgcggg gcatatctga tcgaagggac
     9061 ctcgccggcg gaagcctcgc ggggtttctt
//
LOCUS       DATAJL010000507         3278 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_34859,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000507 DATAJL010000000
VERSION     DATAJL010000507.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3278
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34859"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..134)
                     /locus_tag="VHN39_09775"
     CDS             complement(<1..134)
                     /locus_tag="VHN39_09775"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family membrane protein"
                     /protein_id="HEX2816674.1"
                     /translation="MSKSNDSVALVGRILIGVLFFSSGLSKIAAPVATKGYIAAMGLP
                     L"
     gene            complement(314..1189)
                     /locus_tag="VHN39_09780"
     CDS             complement(314..1189)
                     /locus_tag="VHN39_09780"
                     /inference="COORDINATES: protein motif:HMM:NF007695.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEX2816675.1"
                     /translation="MAQLDMAGEFRLGDKMVNRMGYGAMQLAGPMVFGPPKDPAAAVA
                     VLREAVASGVNHIDTSDFYGPHVVNRLIREALSPYPEDLLIVTKVGAERGDDARRLPT
                     PAASQEALTRAVHDNLRNLGVEQLDVVNFRVMHDVDRPVEGSIEAPVSALAELQRQGL
                     IRHLGLSHVTPAQFEEANMIAPVVCVQNLYNLVHREDDAFIDRLAAVGVAYVPYAPLG
                     GFRGLAAPKLGAITHALDATPMQVALAWLLQRSPNILPIPGTGSSAHLRENLIAGALR
                     LPRAVVDQLDCLAAA"
     gene            1422..2141
                     /locus_tag="VHN39_09785"
     CDS             1422..2141
                     /locus_tag="VHN39_09785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEX2816676.1"
                     /translation="MIEHRPFNALQSSDLGWLKAKHHFSFTDPTAGWGAIRIWNDDMI
                     SPDSGFAPHPHVDMEIVTFVRQGAVTHRDSMGNTGRTETGDVQVMSAGSGIRHSEYNK
                     EPGLTHIFQIWITPEAAGGTPAWGTKPFPKVDRAGRLVVLASGFESDADALPIRAKAR
                     VLGATLLQGQTLDYDAAGGRYLYVVAADGLLSVNGVRLETRDGAAIKDELRLTFTALE
                     DCEFVLVDAPEARAVVRAKAA"
     gene            complement(2467..>3278)
                     /locus_tag="VHN39_09790"
     CDS             complement(2467..>3278)
                     /locus_tag="VHN39_09790"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX2816677.1"
                     /translation="LGMASSALSHAVAALETRLGVRLFNRTTRSVALSAEGEQFVADV
                     APALAAIGAAIARIEEHRAEPSGLLRLNMAPGAARMILAPLVFEYMRLYPQVDVEVVT
                     EGTLVDVVGQGFDAGVRLAEFLPPDMIAVPITRTMRSIVVGSPAYFEGRARPKTPQDL
                     MGHRCIRARMASGAIYRWEFEKRGQSLELDVPGDLTLDESDLMLQAALAGQGLAYLSD
                     PATAEHIAAGRLVSVLEDWSPAYPGLCLYYPSRRNMPARLRAFIDMVREAK"
BASE COUNT          543 a         1117 c         1112 g          506 t
ORIGIN      
        1 aggggcaggc ccatcgcggc gatgtagcct ttggtcgcga cgggggcggc gatcttgctg
       61 aggccgctcg agaagaacag cacgccgatc aggattcgcc cgaccagggc gacagagtca
      121 ttggacttgg acatgggacg gatccttagg taggccgtcg gatcgttttc ctccccgcga
      181 cctggttgct tcaagaagcg gccgctgtgc ggtctcgcca cacactgcag gtgggccggg
      241 ccggcgagct aaggagtcgc gaaagtcgcg acacagcgtt cgcgattgtt gaacgatgcc
      301 gcatcgtcgc tcgtcaggcg gcggcgaggc aatcgagctg gtcgaccacg gcgcgcggca
      361 ggcgcagggc gccggcgatg aggttttccc gcaggtgcgc cgatgacccg gtgccgggaa
      421 tcggcaggat gtttggcgac cgctgcagca gccaggcgag cgcgacctgc atgggcgtgg
      481 cgtcgagtgc gtgggtaatc gccccaagct tcggcgcggc caggcctcgg aagccgccaa
      541 gcggggcgta gggcacgtag gcgacgccga ccgccgccag acggtcgata aacgcgtcat
      601 cttcccggtg gacgaggttg tagaggttct gcacgcagac caccggggcg atcatgttcg
      661 cctcttcgaa ctgcgccggc gtcacgtggc tgagacccag gtggcggatg aggccctgcc
      721 gctgcagctc cgcgagcgcg ctgacaggcg cctcgatcga gccctccacc ggcctatcga
      781 cgtcgtgcat gactctgaag ttcacgacat ccagctgctc gaccccgagg ttgcgcaggt
      841 tgtcgtgcac cgcgcgcgtg agcgcctctt gcgaggcggc gggggtcggc aggcggcggg
      901 cgtcatcgcc ccgctctgcg ccgaccttgg tgacaatcaa gaggtcctcc gggtacggac
      961 tgagcgcctc tcggatcagc cggttgacca cgtgcggccc gtagaagtcg ctggtgtcga
     1021 tgtggttgac gccgctggcc accgcctcac ggagcaccgc gacggccgcc gcgggatcct
     1081 tcggcggccc gaacaccatg gggccggcga gttgcatggc gccgtagccc atgcggttga
     1141 ccatcttgtc gccgagccgg aattcgccgg ccatgtcgag ctgcgccatc gaaacctcca
     1201 attcccagca tatgggcggg ccaccgcggc gatggcagcc ggcggccggg aaacaccggg
     1261 ttccggcggc agactcacga ggccggcgcg tggctcaagc ctgaatcgag aaacgttgga
     1321 tttcactagg ctccattctc cgcgcggccc ggccatcaca cctgtgcggc agacccagag
     1381 cccgcgcttg cgccgaggct cgccccgttt ggagcgtcgc catgatcgaa catcgtccct
     1441 tcaacgcctt gcaatcgagc gacctgggct ggctcaaggc caagcaccac ttctccttca
     1501 ccgacccgac cgcgggctgg ggcgccatac gcatctggaa cgacgacatg atctccccgg
     1561 actctgggtt cgcgccgcac ccgcacgtgg acatggagat cgtcaccttc gtgcggcaag
     1621 gcgcggtcac ccaccgcgac agcatgggca acaccggccg cacggagacc ggcgacgtcc
     1681 aggtgatgag cgccggaagc ggcatccgcc attcggagta caacaaggag cccgggctga
     1741 cccacatctt ccagatctgg atcaccccgg aagccgccgg cggcacgccg gcctggggca
     1801 ccaagccctt ccccaaggtc gaccgggccg gtcgcctggt ggtgctggcc agcggcttcg
     1861 aatccgacgc cgacgccctg ccgatccgcg cgaaggcgcg cgtcctgggc gcgaccctgc
     1921 tgcaaggcca gacgctcgac tatgacgccg ccggcggccg ctatctctat gtggtggcgg
     1981 ccgacggcct gctgtccgtc aacggcgtgc ggctcgaaac gcgcgacggc gcggcgatca
     2041 aggacgagct gcggctgacc tttaccgcgc tcgaggattg cgagttcgtg cttgtggacg
     2101 ctccggaggc ccgcgccgtc gttcgcgcaa aggccgccta aatctcggac gctaaagtcc
     2161 agcgaccagt tccgctgggt caggacgcta gggccggctt cgacccgttg ccgatgttcg
     2221 tcagggcaaa gcctgacgac tgctttgcgc caggaggaga caccagggtt tgaccgataa
     2281 ggagaccgat ttcgagcttg cgaacctcgc cgtcaccgcc gtccgatcgc gcagccggat
     2341 cctggcaagg tgcgggtgtt cttcgacgtc ctggcgggga gcattgcgca ggagcctatt
     2401 cgtccctgta ggcgcttcgt cactgggagc cagcatggcc gccgcgagcg cgtgcaacct
     2461 tggaggtcat ttcgcctccc gaaccatgtc gatgaacgcc cgcaaccgcg ccggcatgtt
     2521 gcggcggctc gggtagtaga gacaaaggcc tggataggcc ggtgaccagt cctccagcac
     2581 cgacaccaac cgcccggcgg cgatgtgctc ggcggtggcg ggatcggaaa gataagcgag
     2641 cccctggccg gccagggcgg cttgcagcat caggtcgctc tcatccagcg tgaggtcgcc
     2701 gggcacgtcc agctccaggc tctgcccgcg cttctcgaac tcccagcgat agatcgcccc
     2761 gctggccatg cgcgcccgga tgcagcggtg tcccatcagg tcctgcggcg tcttcggccg
     2821 cgcccgaccc tcgaaatagg ccggggagcc gacgacgatc gagcgcatcg tgcgggtgat
     2881 gggcacggcg atcatgtccg gcggcaggaa ttccgccagc cgcacgccag cgtcgaagcc
     2941 ctggcccaca acgtcgacca gggtgccctc ggtgacgacc tcgacgtcca cctgcgggta
     3001 gagccgcata tactcgaaga ccagaggcgc caggatcatg cgcgctgcgc ccggcgccat
     3061 gttcagccgc agcagccccg aaggctcggc gcgatgttcc tcgatccgcg cgatggcggc
     3121 gccaatcgcc gccaacgccg gcgcgacgtc ggcgacgaat tgctcgcctt ccgccgacag
     3181 ggcgacgctg cgggtcgtgc ggttgaacag gcgcacgccc aaccgcgtct caagcgccgc
     3241 caccgcgtgg ctcagcgccg aagaggccat tcccagtt
//
LOCUS       DATAJL010000508         3835 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21660,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000508 DATAJL010000000
VERSION     DATAJL010000508.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3835
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21660"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..260
                     /locus_tag="VHN39_09795"
     CDS             <1..260
                     /locus_tag="VHN39_09795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816678.1"
                     /translation="PTWLGYLLAFAALLVLAPLLGWLGHRHGRSIKGGVAMASLMLGM
                     GAMFDPPVKAAMEAEEAMVKGDKGSGDPPDPDIAPAKPSDG"
     gene            319..2247
                     /locus_tag="VHN39_09800"
     CDS             319..2247
                     /locus_tag="VHN39_09800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M61"
                     /protein_id="HEX2816679.1"
                     /translation="MKPALFACAAALAYSTAALAQTSPGPQPYPMPPKTEAPQDTPYP
                     GLLKVQVDATDLDRHIFRVHESIPVAKAGPMTILYPQWLPGNHAANGPMKNIGGVVFK
                     VNGKVIPWMRDPVDVFAFHIDVPASSTSVDIDFDLLSAVANDEGRIVMTPEMLSLQWI
                     NLAMYPAGHFARRVQIEPSVRFPEGWTPFSALETTGTQDGVTHYKAVDFDTLADSPMI
                     AGRYARQIDLDPGGPAPVHLDVIADRAELLDATPDQIERHRALVQQAYKLYGSHHYNH
                     YDFLFSLSDRMGGNGLEHHRSSEDGTIPDYFTGWAKSPSSRDLLAHEYTHSWNGKFRR
                     PADLWTPNFNVPMRGSLLWVYEGQTQYWGFVLSGRSGLLTKQEALDALAATAATYANR
                     VGREWRPVEDTTNDPVIASRRPQPWTSFQRSEDYYSEGQLVWLDADTLIREKSGGKRS
                     LDDFAKSFFGVENGSWTPAPYTFDDIVAALNKVEPYDWAKFLNERINQVAPKPPLDGL
                     ARGGWKLVYTETPTDYFKSAEARRKSTDLTYSIGLVLGRDADIIAVQWDGPAFQTGLT
                     IGSKLLAVNGVAFDADRLKDAITDAKKKGLPLALLVKTGDRFRTVDIDYRGGLRYPRL
                     ERIEGTPDLLSAIYAPKK"
     gene            2244..2963
                     /locus_tag="VHN39_09805"
     CDS             2244..2963
                     /locus_tag="VHN39_09805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816680.1"
                     /translation="MTAANAIRPGSMTRLVATSLALGLAATAAGAQELGQTSAVSFFS
                     PFAGDLVSFPSNAEVEAAWPAQAKAKGIGGSAVAHCLVDIGGELSDCRIMLERSHGGF
                     GAALISLAPRFRLTHAAEGKRPEHSEAVITASWPVFDTAPDWRTPPKPGDFSTTITPA
                     AWRTGKPGSAVMNCLEGRLGTLYDCVAVYQDPPGKGFGAMLLRFQSFLRLKPAMVAGK
                     PVETGMNIAITFHPQQPGEVP"
     gene            complement(2960..3130)
                     /locus_tag="VHN39_09810"
     CDS             complement(2960..3130)
                     /locus_tag="VHN39_09810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816681.1"
                     /translation="MLLRGVDRRGQVGGPLDPLQARVAQAAAAKAIAPGLAQQHQRYG
                     LAPDGVPAAAKS"
     gene            complement(3134..>3835)
                     /locus_tag="VHN39_09815"
     CDS             complement(3134..>3835)
                     /locus_tag="VHN39_09815"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2816682.1"
                     /translation="LADISKAIEMEPKNGDFHLQRARVRIKAEDRPAALKDLDEAVAL
                     KLGDQQVRLTRAGLRLQLKDLKGGEEDYLAAIKMTPQDHALPLNASMQLARGHATEAA
                     VRLLDGWIATNPDEKLLPAALDDRCWARALAGVELDKALKDCDESIRRGGRGAGQLDS
                     RGLVFLRMGRYDDAIGQYNQVIFQAPRAAWALYGRGVAKAKKGLAAEAKADLNAAAAA
                     DKEIVDEAKSFGISP"
BASE COUNT          622 a         1372 c         1235 g          606 t
ORIGIN      
        1 tgcccacttg gctcggctat cttctggcgt ttgcggctct gctggtcctg gcgccgctgt
       61 tgggctggct gggtcaccgg catgggcgca gcatcaaggg cggcgtggcc atggcctccc
      121 tgatgctggg catgggcgcc atgttcgatc cgccggtgaa agccgcgatg gaggcggagg
      181 aggcgatggt caaaggcgac aaaggcagcg gcgatcctcc ggacccggac attgcgccgg
      241 cgaaaccatc tgacggttga gctttgcgcc ggagacgccc tacaacggga aatccttccc
      301 cgttcgaggt cgtgtccgtt gaagccagcc ctgttcgcct gcgccgccgc ccttgcgtat
      361 tcaaccgcgg cgctcgccca gacctcgcct gggccgcagc cctaccccat gccgccgaag
      421 accgaggcgc cgcaggacac gccctacccc ggcctgctga aggtgcaggt cgacgccacc
      481 gacctcgacc gccacatctt ccgcgtccac gagtcgattc cggtcgccaa ggccggaccg
      541 atgaccatcc tttatccgca gtggctgccc ggcaaccatg cggccaacgg cccgatgaag
      601 aacatcggcg gcgtggtctt caaggtgaac ggcaaggtga tcccctggat gcgcgatccg
      661 gtggacgtct tcgccttcca catcgacgtg ccggccagtt caaccagcgt cgatatagat
      721 tttgacctgc tctcggcggt agccaatgac gaaggccgca tcgtcatgac gccggagatg
      781 ctcagcctgc agtggatcaa cctggccatg tacccggccg gccatttcgc gcgccgggtc
      841 cagatcgagc ccagcgtccg cttccccgag ggctggacac cgttctcggc cctggagacc
      901 accggcacgc aagacggtgt cacccactac aaggccgtag acttcgacac actcgccgat
      961 agcccgatga tcgccggccg ctacgcccgg caaatcgacc tggatccggg tggaccggcg
     1021 ccggtgcatc tggatgtcat cgccgaccgc gccgagttgc tcgacgccac gcccgatcag
     1081 atcgagcggc acagggcgct cgtgcagcaa gcctacaagc tctacggctc gcaccattac
     1141 aaccactacg acttcctgtt ctccctctcc gaccggatgg gcggcaatgg tcttgagcac
     1201 caccggtcca gcgaagacgg cacgatcccc gactacttca ccggctgggc gaagagcccg
     1261 tcctcgcgcg acctcctggc gcacgagtac acccactcct ggaacggcaa gttccgccgg
     1321 cccgccgacc tttggacgcc caacttcaac gtgcccatgc ggggctcgct cctgtgggtc
     1381 tacgagggcc agacccagta ctggggcttt gtgctgtccg gccgctcagg gctactcacg
     1441 aagcaggagg cgctggatgc gctggcggcc accgcggcca cctacgccaa ccgcgtcggc
     1501 cgcgaatggc gcccggtgga ggacaccacc aacgacccgg tcatcgcgtc ccggcgcccg
     1561 cagccctgga ccagtttcca gcgcagcgag gactactatt cggaaggcca gctggtctgg
     1621 ctcgacgccg acaccctgat ccgcgagaaa tccggcggca aacgctcgct cgacgacttc
     1681 gccaagagct tcttcggcgt cgagaacggc agctggacgc cggcgcccta caccttcgac
     1741 gacatcgtcg ccgccctgaa caaagtcgag ccctacgatt gggcgaaatt cctcaacgag
     1801 cggatcaacc aggtggcgcc gaaaccgccg ctggacggcc tcgcccgcgg cggctggaag
     1861 ctcgtctaca ccgagacccc gaccgactac ttcaagtccg ccgaagcccg ccgcaagtcc
     1921 accgacctca cctattccat cggcctggtg ctcggccgcg acgccgacat catcgcggtg
     1981 cagtgggacg gtccggcctt ccagacagga ctgacgatcg gcagcaaact gctggcggtc
     2041 aacggcgtgg ctttcgacgc cgatcggctg aaggacgcga tcaccgacgc caagaagaag
     2101 ggccttccgc tcgcgctgct ggtcaagacc ggcgaccgct tccggactgt ggacatcgac
     2161 taccgcggcg ggttgcgcta tccgcgcctg gagcggatcg agggaacccc ggacctgctc
     2221 tcggccatct acgcgccgaa gaagtgacag ccgcaaacgc catccggccc ggatcgatga
     2281 cgcggctggt ggcgacgtcc ctggcgctcg gcctcgcggc cacggcggcg ggggctcagg
     2341 agctcggtca gaccagcgcg gtcagcttct tcagcccctt cgccggcgac ctggtgtcgt
     2401 tccccagcaa tgccgaggtg gaggccgcct ggccggcgca ggcgaaagcc aaggggatcg
     2461 gcggcagcgc cgtggcgcac tgcctggtcg acatcggcgg cgagctctcc gattgccgga
     2521 tcatgttgga gcggtcgcac ggcgggttcg gggcggcgct gatctcgctg gctcccaggt
     2581 tccggctgac gcatgccgcg gagggaaagc gcccggaaca cagcgaggcg gtcatcaccg
     2641 ccagctggcc ggtgttcgac accgcaccgg actggcgaac cccacccaag cccggcgact
     2701 tttccacgac catcacacct gcggcgtggc ggaccggcaa gccgggctct gcggtgatga
     2761 actgcctgga gggccggctc ggcacgctct acgactgcgt ggccgtctac caggacccgc
     2821 ctggcaaggg cttcggggcg atgctgctgc gcttccaaag cttcctgcgc ctgaagccgg
     2881 cgatggtcgc cggaaagccg gtcgagaccg ggatgaacat cgccatcacc ttccacccgc
     2941 agcagccggg cgaggttccc taggacttgg cggcggccgg gacgccgtcc ggcgccaggc
     3001 cgtagcgctg gtgctgctgg gccaggccgg gcgcgatcgc cttggccgcg gcggcctgcg
     3061 ctacccgcgc ctgaagcgga tcgaggggac ccccgacctg ccctcggcga tctacgccgc
     3121 gaagaagcaa gtctcagggc gaaatcccga agctcttcgc ctcatcgacg atctccttgt
     3181 ccgcggccgc ggcggcgttc aggtcggcct tggcttcggc ggccaggccc ttcttcgcct
     3241 tggcgacccc gcggccatag agcgcccacg ccgcccgcgg cgcctggaag atcacctgat
     3301 tgtattggcc gatggcgtcg tcatagcggc ccatgcgcag gaagacgagg ccgcggctgt
     3361 cgagctggcc ggcgccccgg ccgccccggc gaatggactc gtcgcagtcc ttgagcgcct
     3421 tgtccaactc cacgcccgcc agggcgcgcg cccagcaccg gtcatccagg gcggccggca
     3481 gcagcttttc gtcgggattg gtcgcgatcc agccgtccag caggcgcacg gcggcctcgg
     3541 tggcgtgtcc tctcgccagc tgcatggagg cattgagcgg cagcgcgtgg tcctgtggcg
     3601 tcatcttgat tgccgccaga tagtcctcct cgccgccctt aaggtccttc agctgcaggc
     3661 gcaggccggc gcgggtcagc cgcacctgct ggtcgcccag cttcaacgcc acggcctcgt
     3721 cgaggtcctt gagggcggca ggcctatctt cggccttgat ccggacgcgc gcccgctgca
     3781 ggtggaagtc cccattcttc ggctccatct cgatcgcctt ggagatgtcc gccag
//
LOCUS       DATAJL010000509         1905 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_119630,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000509 DATAJL010000000
VERSION     DATAJL010000509.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1905)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1905)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119630"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1905)
                     /locus_tag="VHN39_09820"
     CDS             complement(<1..>1905)
                     /locus_tag="VHN39_09820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="OB-fold nucleic acid binding domain-containing
                     protein"
                     /protein_id="HEX2816683.1"
                     /translation="EVMQYVYARYGRDRAAIVATVIHYRPRMAIRQVGKALGLTEDIT
                     AALANTVWGSWGDSVPDDHIRQAGLDPANPEIRRAVTLAEELLGFPRHLSQHVGGYVL
                     TKRRLDETVPIGNAAMKDRTFIEWDKDDIDALGLMKVDVLALGMLTALKRGFDMLPPL
                     PDGRRITDIAHIPQEDPAVYDMLCEADSVGVFQVESRAQMSMLPRLRPRKFYDLVIEV
                     AIVRPGPIQGDMVHPYLRRREGSEPVEFPAPSPEHGPADELRQVLGKTHGVPLFQEQA
                     MRLAIEAAKFSDNDADGLRRSMATFRANGRLWEYKEMFIQGMAGRGYDPEFAARCFKQ
                     IEGFGSYGFPESHAISFALLVYASAWMKRHHPEVFCASLLNSQPMGFYQPAQLVRDAK
                     EHGVEVRAPDIVCSDWDCTLEPPDDPRSPRRALRLGLRQIKGFKEAEALAFMERRAAG
                     LVTLEDYVLRSGLSRRGLELLAEADAFRALGLSRREALWAVKGMADEVGAERTAPLIA
                     RQSVKEAQVQLPFMTLPKEVAEDYRTTSLSLKQHPVAFFRDGLSTLRAVPCAALKTMR
                     NGARVSVGGLVLVRQRPGTAKGVVFLTLEDETGIANIVCWKDAFDANRRLVMGSSFLV
                     VHGQLQVANNV"
BASE COUNT          290 a          647 c          657 g          311 t
ORIGIN      
        1 acattgttgg ccacctgcag ctggccgtgc accaccagga aggacgagcc catcaccagg
       61 cggcggttgg cgtcgaaggc gtccttccag cagacgatat tggcgatgcc cgtctcgtct
      121 tccaatgtga ggaacaccac gcccttggcg gtgcccggcc gctggcgcac cagcaccagc
      181 ccgcccaccg agacgcgggc gccgttccgc atcgtcttca gggccgcgca ggggaccgcg
      241 cgcagggtgg aaagtccgtc gcggaagaag gccaccggat gctgtttcag cgacaggctg
      301 gtggttcggt agtcctcggc cacctccttg gggagggtca tgaacggcag ttggacctgg
      361 gcctccttga cgctctgacg ggcgatcagc ggcgcggtgc gttcggcccc tacctcgtcg
      421 gccatgccct tcaccgccca cagcgcctcg cggcgggaaa ggcccagcgc gcggaaggcg
      481 tcggcttcgg ccagcagctc cagcccccgc cgcgagaggc ccgagcgcag gacgtagtcc
      541 tccagggtga cgagcccggc ggcgcggcgt tccatgaagg ccagcgcctc ggcttccttg
      601 aaccccttga tctgtcgaag accgaggcgc agcgcccggc gcggggacct gggatcgtcc
      661 ggcggctcca gcgtgcagtc ccagtcgctg cagacgatgt cgggcgcgcg cacctcgacg
      721 ccgtgttcct tggcgtcgcg gaccagctgg gccggctggt agaagcccat gggctggctg
      781 ttcaggaggc tcgcgcagaa cacctcgggg tggtggcgtt tcatccaggc cgaggcgtag
      841 accaggagcg cgaagctgat cgcgtggctt tccgggaagc cgtaggagcc gaagccctcg
      901 atctgtttga agcagcgcgc ggcgaactcc gggtcatagc cgcggccggc catgccctgg
      961 atgaacatct ccttgtattc ccacagccgc ccattggcgc ggaaggtggc catggagcgg
     1021 cgcaggccgt cggcgtcgtt gtcggagaat ttcgccgcct cgatggccag ccgcatggcc
     1081 tgttcctgga agagcggcac gccgtgggtc ttgccgagca cctgtcgcag ttcgtccgcc
     1141 gggccatgct ccggcgaggg cgcgggaaat tccaccggct cgctcccctc gcggcggcgc
     1201 agatagggat gcaccatgtc cccctggatc gggcccggcc gcacgatcgc cacctcgatc
     1261 accaggtcat agaatttccg gggcctgagc ctcggcagca tcgacatctg cgcccggctc
     1321 tcgacctgga agacgcccac ggaatcggct tcgcagagca tgtcgtagac cgccggatct
     1381 tcctgcggga tgtgggcgat gtcggtgatg cgccggccgt ccggcagcgg tggcagcatg
     1441 tcgaagccgc gcttcagcgc ggtcagcatg cccagcgcca gcacatcgac cttcatcagg
     1501 ccgagcgcat cgatgtcgtc cttgtcccac tcgatgaagg tgcggtcctt catggccgcg
     1561 ttgccgatcg gcacggtctc gtcgagccgg cgcttggtca gcacatagcc gcccacatgc
     1621 tgcgacaggt gccgcgggaa gcccagcaac tcttcggcca aggtgacggc ccggcggatt
     1681 tccgggttcg cggggtcgag gccggcctgg cggatgtgat cgtccggaac gctgtcgccc
     1741 cagcttcccc agacggtgtt ggcgagcgcg gcagtaatgt cctcggtgag gccgagcgcc
     1801 ttgcccacct ggcggatcgc catgcgcggc cggtaatgga tcacggtggc gacgatggcc
     1861 gcgcggtcgc gaccgtagcg cgcgtagacg tactgcatca cctcc
//
LOCUS       DATAJL010000510         5009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_93984,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000510 DATAJL010000000
VERSION     DATAJL010000510.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5009
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93984"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..749
                     /locus_tag="VHN39_09825"
     CDS             252..749
                     /locus_tag="VHN39_09825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2816684.1"
                     /translation="MSEVLDAVDAKILDLIQHDAGLSVAEIAERVGLSSSPCWRRIKR
                     LEDAGVIQRRVTILDREKLGLGFEVYCTVKLSLPTKDNLDAFETAITKLSEVVQCATV
                     TGSADYELRIVTRDMHAFDSFLRERLLSLGLVSNIESRIVIRSVKNTTAAPLGLISPY
                     VSAQG"
     gene            773..1666
                     /locus_tag="VHN39_09830"
     CDS             773..1666
                     /locus_tag="VHN39_09830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEX2816685.1"
                     /translation="MIELVIDQRRRDLGGFEVGRVLPFHSHRMVGPFIFFDHMGPATF
                     QAGFPRNVDVRPHPHIGLSTVSYLFEGAMTHRDSVGSTEVIRPGEVNWMTAGRGITHS
                     ERFEDLRAQGGTMHGIQAWVALPDGDEETDPAFAHHEGADLPTYEGGGMWARLIAGKA
                     FGAEAKVKTHSPMFYVHWALDAGATASLPAEYPERAAYVAQGIVEIDGRQIHEGQMAV
                     FQPGDSVAITAVTNAIVMLLGGEPVGERFIEWNFVASSKDRIAQAKADWRAGRMKLPD
                     ADDQEFIPLPDDPPGPAPAMS"
     gene            1707..3083
                     /locus_tag="VHN39_09835"
     CDS             1707..3083
                     /locus_tag="VHN39_09835"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009063 - amino acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEX2816686.1"
                     /translation="MNVSAFDLFKLGIGPSSSHTMGPMTAAGRFLAWLGPRVDQTGRI
                     EVTLYASLALTGRGHATDRAVILGLAGFEPRGLDPDQADKVIVEVRANHWLMLAGRQG
                     IAFDEATDLKWEGRTRLPQHPNALKFAAFDASGALIAERSYFSIGGGFVRDEGEMGLN
                     TPPEAAAIVEVPYPFDSGVDLLEMAAKAGLTIAALMRANERVRRTDAEIDAGLDEVQA
                     AMYACIDRGMKTDGILPGGLKVQRRAFQVHQSLMCDADRRIADPLAALDWVNLWALAV
                     NEENAAGGKVVTAPTNGAAGLVPAVLRYYDRFHQGTPDGRRTFLLTAAAIGALYKKNA
                     SISGAEVGCQGEVGVACSMAAAGLTAALGASNAQIENAAEIAMEHNLGLTCDPIGGLV
                     QIPCIERNAMGAVKAIDASRLALLGDGQHSVSLDKVIATMKRTGEDMSHIYKETSLGG
                     LAVNLAEC"
     gene            3100..3423
                     /locus_tag="VHN39_09840"
     CDS             3100..3423
                     /locus_tag="VHN39_09840"
                     /inference="COORDINATES: protein motif:HMM:NF019590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HEX2816687.1"
                     /translation="MIVEMRTYTLALGATGRYFKLYGEKGLSVQKRILGHLVGYYSVE
                     VGALNQVIHLWAYDSLDDRAKRRAALWADKEWLAYIAEVGGLVTRQENQILNPAPFFE
                     VPPAT"
     gene            complement(3436..4089)
                     /locus_tag="VHN39_09845"
     CDS             complement(3436..4089)
                     /locus_tag="VHN39_09845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2816688.1"
                     /translation="MSLTLYYHPLSSFCWKALIALYEAEVVFEPRLVNLGDAAERAAF
                     QAVWPLAKFPVLRDDGRGQTVPESTIIVDYLARTQPSAARLIPSDPDQSMRTHLLDRL
                     IDSYIHLPFQQIVSERLRPDGRHDPFGVERNRDAVRAGYDLIAPMIGEEGWAMGETFT
                     LADCAALPALFYADYAVPLADWPGLAAYLGRLKARPSVARVLAEAEPFFQYFPLKDG"
     gene            complement(4100..4723)
                     /gene="pgsA"
                     /locus_tag="VHN39_09850"
     CDS             complement(4100..4723)
                     /gene="pgsA"
                     /locus_tag="VHN39_09850"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEX2816689.1"
                     /translation="MKSLPNILTSLRLVLALFMFVALAAAAGAVPGLSDHLEPQTQFA
                     LQRWAVYAFVIAAVTDFFDGWLARKLDAETVWGAILDPIGDKVLVCGAVLGLMSLGAQ
                     PMVLLPAGLILFREFTVSALREVGAGKGIKLPVTLLAKWKTTLQLVALAMELVVGAWG
                     AFPFLPQTPAVEGPFTLAAHSLFWLATLVTLITGAQYWEQTRKALEA"
     gene            complement(4730..4870)
                     /locus_tag="VHN39_09855"
     CDS             complement(4730..4870)
                     /locus_tag="VHN39_09855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816690.1"
                     /translation="MSKSFGEAALIMARKGWVTAAPRSAAGLPMAAEDVQVTIPFRPD
                     AR"
BASE COUNT          848 a         1704 c         1720 g          737 t
ORIGIN      
        1 tgaccccaca ttgagaatct gagggcgcct tttggcgcaa cgctggtgat agaaacccgg
       61 ccttccgtga gcagaaactt gtcgtcgagc gccacttcag cgtcccgcat cgcaattttc
      121 ttccttctgc ccctcgcgcg ccctttagaa catcatataa gattgcagca attgcttgcc
      181 aaaagcgtgc cccgcccaat cggttccggg gcaagaaccg cgcgcgcagg cctcgggttg
      241 gggaggaaat cttgtctgag gtgctcgacg ccgtcgatgc taagattctg gatctcatcc
      301 agcatgacgc cgggctctcc gttgcggaga tcgccgagcg ggtcggattg tcctccagcc
      361 cctgctggcg gcgcatcaaa cgcctggagg acgccggcgt catccaacgc cgggtgacca
      421 tcctcgaccg cgagaaactg ggcctgggct tcgaggtcta ttgcaccgtc aaactgagcc
      481 tgccgaccaa ggacaacctc gacgccttcg agaccgcgat caccaagctg agcgaggtcg
      541 tgcagtgcgc cacggtcacc ggctcggccg actatgagct gcgcatcgtc actcgcgaca
      601 tgcacgcctt cgacagcttc ctgcgcgagc ggctgctgtc gctgggcctg gtctccaata
      661 tcgaaagccg catcgtcatc cgctcggtga agaacaccac cgccgccccg ctcggcttga
      721 tcagccccta tgtgagcgcg caaggatagg cttcctctca gggaggtttt ccgtgatcga
      781 actcgtcatc gaccagcggc gccgcgacct cggcggattc gaggtgggcc gcgtgctgcc
      841 gttccattcg caccggatgg tggggccctt catcttcttc gaccacatgg gcccggcgac
      901 cttccaggcc ggctttccgc gcaacgtcga cgtccgcccg catccgcaca tcggcctttc
      961 gaccgtctcc tatctgttcg aaggcgccat gacccatcgc gacagcgtcg gctcgaccga
     1021 ggtgatccgg ccgggcgagg tcaactggat gaccgcggga cgcggcatca cccactccga
     1081 gcgcttcgag gacctgcgcg cccaaggcgg gaccatgcac ggcatccagg cctgggtggc
     1141 cctgcccgac ggggacgaag agaccgatcc cgccttcgcc caccatgagg gggccgacct
     1201 gccgacctac gaaggcggcg gcatgtgggc ccggctgatc gcgggcaagg ccttcggcgc
     1261 cgaggccaag gtgaagaccc actcgccgat gttctacgtc cactgggcgc tggacgccgg
     1321 cgcgaccgcc agcctgccgg ccgaatatcc cgagcgcgcg gcctatgtgg cccaggggat
     1381 cgtcgagatc gacgggcgcc agatccacga gggccagatg gcggtcttcc agccgggcga
     1441 cagcgtggcg atcaccgcgg tgaccaacgc catcgtcatg ctgctgggcg gcgagccggt
     1501 cggcgaacgg ttcatcgagt ggaacttcgt ggcctcctcc aaggaccgca tcgcccaggc
     1561 caaggccgac tggcgcgccg gccgcatgaa gctgcccgac gccgacgacc aggagttcat
     1621 tcccctgccg gatgatccgc cgggcccggc gccggcgatg agctgagacg ggacgggcgc
     1681 acgaaggatg ggctagacag cgccccatga acgtcagcgc cttcgacctc ttcaagctcg
     1741 gcatcgggcc gtccagttcg cacaccatgg ggccgatgac cgccgccggc cggttcctcg
     1801 cgtggctcgg gccgcgggtg gaccagacgg gaaggatcga ggtgacgctc tatgcctccc
     1861 tggcgctcac cgggcggggc cacgccaccg accgggcggt gatcctgggc ctggcggggt
     1921 tcgagccgcg cgggctcgac ccggatcagg ccgacaaggt gatcgtcgag gtccgcgcca
     1981 accactggct gatgctggcc gggcgccaag ggatcgcctt cgacgaggcc acggacctga
     2041 agtgggaagg ccgcacgcgc ctgccgcagc atcccaatgc gctgaagttc gccgccttcg
     2101 acgcctcggg cgccctcatc gccgagcgca gctacttctc catcggcggc ggcttcgtcc
     2161 gcgacgaggg cgagatgggc ctgaacaccc cgccggaagc cgcggccatc gtcgaggtcc
     2221 cctatccgtt cgactcaggc gtggacctgc tggagatggc ggccaaggcc ggcctgacca
     2281 tcgcggccct gatgcgcgcc aacgagcggg tccgccgcac cgacgccgag atcgacgccg
     2341 gcctcgatga ggtccaggcc gccatgtacg cctgcatcga ccgcggcatg aagaccgacg
     2401 gcatcctgcc gggcgggctg aaggtccagc ggcgcgcctt tcaggtgcac cagtccctga
     2461 tgtgcgacgc cgaccgccgc atcgccgacc ctctggcggc gctggactgg gtgaacctct
     2521 gggcgctggc ggtgaacgag gagaacgcgg ccggcggcaa ggtggtgacc gcgccgacca
     2581 atggcgcggc ggggctcgtc ccggcggtgc tgcgctacta cgaccgcttc catcagggga
     2641 ccccggatgg acgccgcacc ttcctgctga ccgcggcggc catcggcgcg ctttacaaga
     2701 agaacgcctc gatctccggc gccgaggtgg gctgccaggg cgaggtgggc gtcgcctgtt
     2761 cgatggccgc ggccgggctg accgcggcgc tgggcgcgtc caacgcccag atcgagaacg
     2821 ccgccgagat cgccatggag cacaacctcg gcctcacctg cgacccgatc ggcggcctgg
     2881 tgcagatccc ctgcatcgag cgcaacgcca tgggcgcggt gaaggccatc gacgcctcgc
     2941 gcctggccct gctgggtgac ggccagcact ccgtcagcct cgacaaggtg atcgccacca
     3001 tgaagcgcac cggcgaggac atgagccaca tctacaagga aacctcgctg ggcggcctgg
     3061 ccgtcaacct ggcggaatgc tgaagaagga cgtgtacgga tgatcgtcga gatgcgcacc
     3121 tacaccctgg ccctgggcgc caccggccgg tacttcaagc tctatggcga gaagggcctt
     3181 agcgttcaga agcgcatcct gggccacctg gtcggctact acagcgtcga agtcggcgcc
     3241 ctgaaccagg tcatccacct ctgggcctac gacagcctgg acgaccgcgc caaacgccgc
     3301 gcggcgctct gggccgacaa ggaatggctg gcctatatcg ccgaggtcgg cggcctggtc
     3361 acccggcagg aaaaccagat cctcaacccc gcgcccttct tcgaggtccc gccggccacc
     3421 tagcggcgtg cggcgtcagc cgtccttcag cgggaaatac tggaagaagg gctcggcctc
     3481 ggccaggacg cgggccacgc tgggcctggc cttgaggcgc ccgagatagg cggcgaggcc
     3541 cggccagtcc gccagcggga ccgcatagtc ggcgtagaac agcgccggga gcgccgcgca
     3601 gtcggcgagc gtgaaggtct cccccatggc ccaaccctcc tcgccgatca tcggggcgat
     3661 gaggtcgtag cccgcgcgga cggcgtcgcg gttgcgctcg acgccgaagg ggtcgtgccg
     3721 gccgtccggc cgcagccgct cgctgacgat ctgctggaac ggcaggtgga tgtagctgtc
     3781 gatcagtcgg tcgaggagat gggtccgcat cgactggtcg ggatcggacg ggatcaggcg
     3841 cgcggccgag ggctgggtcc gcgccagata gtcgacgatg atcgtcgact ccgggaccgt
     3901 ctggccgcgg ccgtcgtcgc gcaagaccgg gaacttggcg agcggccaga ccgcctggaa
     3961 ggcggcgcgc tcggccgcat cgccgaggtt caccaaccgg ggctcgaaga cgacctcggc
     4021 ctcatagagc gcgatcagcg ccttccagca gaacgacgac agcgggtggt agtagagggt
     4081 cagggacacg ggccgactcc tacgcctcca gggccttgcg ggtctgttcc cagtactgcg
     4141 ccccggtgat cagggtgacc agggtcgcga gccagaagag gctgtgcgcg gccagggtga
     4201 agggaccctc gacggccggg gtctgcggca ggaaggggaa ggcgccccag gcgccgacca
     4261 ccagctccat ggccagcgcc accagctgaa gcgtggtctt ccacttggcg agcagggtga
     4321 ccggcagctt gatccccttg ccggcgccga cttcgcgcaa cgcgctgacg gtgaactcgc
     4381 ggaacaggat caggccggcc ggcagcagca ccatcggctg ggcgcccagc gacatcaggc
     4441 cgagcaccgc gccgcagacc agcaccttgt cgccgatcgg gtcgaggatc gcgccccaga
     4501 ccgtttcggc gtcaagcttg cgggccagcc agccgtcgaa gaagtcggtc accgcggcga
     4561 tgacgaaggc gtagacggcc cagcgctgca gggcgaactg ggtctgcggc tccaggtgat
     4621 cggagaggcc gggcacggcg ccggccgcgg cggccagcgc cacgaacatg aacagcgcca
     4681 ggaccaggcg cagggaggtc aggatgttgg ggagggactt catggaccct caacgcgcgt
     4741 cggggcggaa aggtatggtg acctggacat cttccgccgc catcggcagg ccggcggccg
     4801 accgcggggc cgcggtcacc caacccttgc gcgccatgat cagggcggcc tcgccgaagg
     4861 atttgctcat gggcgcctcg cctgaaagcg gactcgctgg acgttggctg agggggagcc
     4921 agactcttcg cttgaacctg ctcaagagat ggctgtgagt tgatgatgag cggaattatc
     4981 ggctggaggc aggctgtgaa gatggggat
//
LOCUS       DATAJL010000511         1510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8920,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000511 DATAJL010000000
VERSION     DATAJL010000511.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8920"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..723
                     /locus_tag="VHN39_09860"
     CDS             <1..723
                     /locus_tag="VHN39_09860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS5 family transposase"
                     /protein_id="HEX2816691.1"
                     /translation="ALDDRLSFRRFVGLALEEKVPDHTVLNRFRNRLISEGLLEKLFA
                     ELDRQLEKAGVILRRGTMLDATLIEAVSAPPKGDRPSNDPDAGFAKRSGKAGSTFGYK
                     AHVGVDEGSGIIRRVLTTAANVNDTTPADDLIVGDEPVVWADAAYHTHAREAALKARG
                     VKARLMRRPNKHHPKLPPRLARYNRLIARRRAAVETTFATLKNRMRLTRIRYVGLSKA
                     SAQVMLAAIAFNLRRWTRLAPA"
     gene            complement(875..>1510)
                     /locus_tag="VHN39_09865"
     CDS             complement(875..>1510)
                     /locus_tag="VHN39_09865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX2816692.1"
                     /translation="KFGVAYPMTPPLQELIDQVLRDSRWDMTYLGMQVVIEGLALAAF
                     QQIRDHAQNPLAAAVNAYVMQDESRHVAFGRLALRDYYPQLTQKERDEREEFLLEACY
                     LMRDRFDAVEVWKTLGLDPARCAEHMYDSGFMELFRSSLFTRIVPIVKDIGLWGDTIR
                     NGYETMGIIGYAQTDVQALQEADDTVAKDFDARRDYVQSVVDRATALEPAE"
BASE COUNT          255 a          540 c          488 g          227 t
ORIGIN      
        1 gcgctggacg accggttgtc gttccggcgc ttcgtgggct tggcgctgga agagaaggtg
       61 cccgaccata cggtgctgaa ccgcttccgc aatcggctga tcagcgaggg gctgctggag
      121 aagctgttcg ccgagctcga ccggcagctg gagaaggccg gcgtgatcct gcggcgcggg
      181 accatgctgg acgccacgct gatcgaggcg gtgagcgcgc cgccgaaggg ggatcggcct
      241 tcgaacgacc ctgacgccgg cttcgccaag cggtccggca aggctggctc gaccttcggc
      301 tacaaggccc acgtcggcgt cgacgagggc tcggggatca tccggcgcgt gctcaccacg
      361 gcggccaatg tcaacgacac cacgccggcc gacgacctta tcgtgggcga cgagccggtg
      421 gtctgggccg acgccgccta ccacacccat gcccgcgagg cggcgctgaa ggccaggggc
      481 gtgaaagccc ggctgatgcg ccggcccaac aagcaccatc cgaagctgcc gccacgcctg
      541 gcccgttata accggctcat cgcccgccga cgcgccgcgg tggagaccac cttcgccaca
      601 ttgaagaacc ggatgcgcct tacccgcatc cgctacgttg gcctgtccaa ggcctcggcc
      661 caggtgatgc tcgccgccat cgccttcaat ctcaggcgat ggacccgcct cgccccggcc
      721 tgaccacgcc cgaactgcgc ctaaaagccg gccaacaccc caaaacaacc gcccccacgg
      781 acccgcagaa catccgccca gcctcactcc acgctcaagc tccgcctccc agcccacgca
      841 caccgttgcg caacaggccc ctcgaggggg agggtcactc cgccggctcc agcgcggtgg
      901 cgcggtcgac gacgctttgg acatagtcgc ggcgggcgtc gaagtccttg gcgacggtgt
      961 cgtcggcttc ctgcagcgcc tgaacatcgg tctgcgcata gccgatgatg cccatggtct
     1021 catagccgtt gcggatggtg tcgccccaca gcccgatgtc cttcacgatc ggcacgatgc
     1081 gggtgaacag cgacgagcgg aacagctcca tgaagccgct gtcgtacatg tgctcggcgc
     1141 agcgggccgg atcgaggccc agcgtcttcc acacttcgac cgcgtcgaag cggtcgcgca
     1201 tcagatagca ggcctccagc aggaactcct cgcgctcgtc ccgctccttc tgggtcagct
     1261 gcggatagta gtcgcgcagc gccagccggc cgaaggccac gtggcgggac tcgtcctgca
     1321 tcacataggc gttgaccgcc gcggccagcg ggttttgcgc gtggtcgcgg atctgctgga
     1381 aggcggccag cgccaggccc tcgatcacca cctgcatgcc gaggtaggtc atgtcccagc
     1441 ggctgtcgcg cagcacctgg tcgatcagct cctgcagcgg cggggtcatc ggataggcga
     1501 cgccgaactt
//
LOCUS       DATAJL010000512         2816 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47616,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000512 DATAJL010000000
VERSION     DATAJL010000512.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47616"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            8..226
                     /locus_tag="VHN39_09870"
     CDS             8..226
                     /locus_tag="VHN39_09870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEX2816693.1"
                     /translation="MATLRKRSVQLSGHATSIALEPEFWAVLEAMAAADAVSLAGLIG
                     RIDDARAGRPLASACRVAALAFAQARPR"
     gene            complement(208..810)
                     /locus_tag="VHN39_09875"
     CDS             complement(208..810)
                     /locus_tag="VHN39_09875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816694.1"
                     /translation="MSNDAGKAHLDTYLEQVRRNLKGLPKSEADEIIAELRSHVLDRV
                     AGQPTPNQVEAAIEALGSPREVARVNVTERVGAEVEEDRSPLTVLRGIGRLAGLSLYG
                     AFAGIVSFTGYGVAASFLVTAAVKPFWREHAGLWRLPDAKDDYSFSLGVTSAPTGQEV
                     LGWWIIPIGVAVGVIVGWLTWRFGIFSVRFMRRSAQRGRA"
     gene            complement(807..1181)
                     /locus_tag="VHN39_09880"
     CDS             complement(807..1181)
                     /locus_tag="VHN39_09880"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX2816695.1"
                     /translation="MNDQPDIPADELGKWEIQVRKGGLGLAVLAILWPERLYGLEILR
                     RLGSDAGMLIPEGTIYPLLSRMKAEGLVDSEWVEADAGHPRKYYRLTDPGRRRVREMA
                     QSWRAFAQGLERLLAPMDGDPK"
     gene            1244..1912
                     /locus_tag="VHN39_09885"
     CDS             1244..1912
                     /locus_tag="VHN39_09885"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEX2816696.1"
                     /translation="MSDIVRPPISRPISAAEVVLGAAIVIGHNVFRVLPNEVPVLFVL
                     ALVSTRLREGGWAALGFRRPKSWVVVIGLALGAAVLRLALGQFVIEPVTAHFWPPIVG
                     PKGFDKIAGNPMAALSALGLIWTFAAFGEEIGYRGYLMKRAADVFGGTRLAWAAGLVI
                     SAVLFGYGHFYKGPAGILDSGVAGLILGGVYLLSGRCLWTCILAHGLIDTIGVVLLFF
                     GLAD"
     gene            1983..2297
                     /locus_tag="VHN39_09890"
     CDS             1983..2297
                     /locus_tag="VHN39_09890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816697.1"
                     /translation="MFAAPPPEPPPAITAVQQNDLECLSVGAVMGRSAGGSGISPWAS
                     RLVRAYLGRLQRSDASRDWLAMTTPSSEMSYGWFLRRMDECETPLRPMRRARPAQASI
                     PD"
     gene            2365..>2816
                     /locus_tag="VHN39_09895"
     CDS             2365..>2816
                     /locus_tag="VHN39_09895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEX2816698.1"
                     /translation="MPASDSPFDPPATRISDLARADARPADYLDGLNPEQRAAVETTE
                     GPVLVLAGAGTGKTRVLTTRLAHILATGKARPWELLAVTFTNKAAREMRERITHIIGP
                     QAEGLRWLGTFHSIAAQILRRHAELVGLKASYTIIDVDDQERLIKQLL"
BASE COUNT          431 a          983 c          928 g          474 t
ORIGIN      
        1 cctgctcatg gcgaccttaa gaaaacgctc tgtgcagctc tccggccacg ccacctcgat
       61 cgcgctggag ccggagttct gggcggtgct ggaggccatg gcggcggcgg acgccgtgag
      121 tctcgcgggc ctgatcggcc gcatcgacga tgcccgcgcc ggccgccccc tcgcctcggc
      181 ctgtcgggtg gcggcgctgg ccttcgctca ggcgcggccg cgctgagccg aacggcgcat
      241 gaatcgcacg ctgaagatcc cgaaccgcca ggtcagccag ccgacgatca cgccaacggc
      301 gacgccgatc gggatgatcc accagcccag cacctcctgc ccggtggggg ccgaggtgac
      361 gccaagcgag aaggaatagt cgtccttggc gtccggcagg cgccagagac ccgcatgctc
      421 ccgccagaac ggcttcacgg ccgcggtgac cagaaagctc gcggccacgc cgtaaccggt
      481 gaaggagacg atgcccgcga acgcgccata gaggctgagg cccgcaagtc ggccgatccc
      541 gcgcaggacg gtgagcggcg accggtcttc ctcgacctcg gcgccgaccc gctcggtgac
      601 gttgacccgg gcgacctcgc gcgggcttcc aagcgcctcg atcgccgcct cgacctggtt
      661 tggcgtcggc tggcccgcca cgcggtccag cacatggctt cggagttcgg caatgatctc
      721 gtcggcctcc gatttcggca ggcccttcag gttgcgccga acctgttcga gataggtgtc
      781 cagatgcgcc ttgccggcgt cattgctcat ttcgggtctc catccattgg ggcgagcagg
      841 cgctcgagcc cctgggcgaa ggcgcgccag ctctgcgcca tctcgcgcac acgccggcgg
      901 ccgggatcgg tcaggcggta gtacttgcgc ggatggccgg cgtcggcctc cacccactcg
      961 gaatcgacaa ggccctcggc cttcatgcgg ctgagcagtg gatagatggt gccctcgggg
     1021 atcagcatgc cggcgtcgct gcccagccgc cgcaggatct ccaggccata gagccgctcg
     1081 ggccacagga tggcgagcac ggccaggccc aggccgccct tgcgcacctg gatctcccac
     1141 ttgcccagct cgtcggccgg gatatccggt tgatcgttca tgcatcatac cttgcatatc
     1201 tatgtatcgt gcgtcaaatt acattcgatc catggagtct ccgatgagcg acatcgtccg
     1261 acctccgatt tccaggccga tcagcgcggc cgaggtcgtc ctcggcgcgg cgatcgtgat
     1321 cggccacaac gtctttcgcg tcctgccgaa cgaggtgccg gttctcttcg tgctggcgct
     1381 cgtctcgacg cgtctgcgcg agggcggctg ggcggccctg ggcttcaggc ggccgaagtc
     1441 ctgggttgtc gtcatcggcc tggcgctggg cgctgcggtc ctgcgtctgg ctctcggaca
     1501 attcgtcatc gagcctgtca ccgcacattt ctggccgccg atcgtgggcc cgaagggttt
     1561 cgacaagatc gcaggaaacc ccatggcggc gctttccgcc ctgggcctga tctggacctt
     1621 cgcggcgttc ggcgaggaga tcggctaccg cggctatctg atgaagcggg cggccgacgt
     1681 tttcggagga acccgcctgg cctgggccgc gggtctcgtc atctccgccg tgctgttcgg
     1741 ctacggccat ttctacaagg gaccggccgg catcctcgat tccggcgtcg ccggactgat
     1801 cctgggtgga gtctacctgc tgtcaggccg ttgtctgtgg acctgcattc tggcgcacgg
     1861 cctgatcgac accatcggcg tcgtactgct gttcttcggc ctcgcggact gacaagccca
     1921 cgctggcggg ctaaatggaa gctcgacgcc gcgccatgcc cgcggagtga tcaagggccc
     1981 cgatgttcgc cgcaccgccg cccgaaccgc cacccgcgat cacagccgtg cagcagaacg
     2041 atctcgagtg cctcagcgtc ggggcggtga tgggcagatc ggccggcgga tcggggatca
     2101 gcccctgggc ctcgcgcctg gtgcgggcct atctcggcag actgcagcgc agtgacgcct
     2161 cgcgcgattg gctcgccatg acgaccccct cctcggagat gagctacggc tggtttctgc
     2221 ggcgcatgga tgaatgcgag acgcccttgc ggcccatgcg tcgagcccgt ccggcgcagg
     2281 cctcgatacc cgactgaggc cacaaggaac acatagcgaa cgcgcgggcg cccaatcggc
     2341 gcatgacatg ctagatgacc atcgatgccc gcttccgact ctcctttcga tccccccgcg
     2401 acgcggatca gcgatctcgc ccgcgctgat gcacggcccg cggactatct ggacggcctg
     2461 aatcccgagc agcgggcggc ggtggagacc accgagggcc cggtcctggt gctggccggc
     2521 gccggcacgg gcaagacccg ggtcctgacc acccggctcg ctcacatcct ggccaccggc
     2581 aaggcgcggc cctgggagct gctggccgtc accttcacca acaaggccgc ccgcgagatg
     2641 cgcgagcgga tcacccacat catcgggcca caggccgagg ggctgcgctg gctgggcacc
     2701 ttccattcca tcgccgcgca gattctgcgc cgccacgccg aactggtggg tctgaaggcc
     2761 agctacacga tcatcgatgt cgacgatcag gagcggctga tcaagcagtt gctgga
//
LOCUS       DATAJL010000513         5980 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_67976,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000513 DATAJL010000000
VERSION     DATAJL010000513.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5980)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5980)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_67976"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..525
                     /locus_tag="VHN39_09900"
     CDS             <1..525
                     /locus_tag="VHN39_09900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2816699.1"
                     /translation="GKLFAYEWATDAAPDIMAIAKALGGGFPVGACLATAEAGRGMVV
                     GSHGSTYGGNPLAMAVGLASVEELVKPELMAHVREIAGYFTQQFEGLKARFPDVVEDI
                     RGKGLLIGLKLKTPNREFMQHARDERLLIAGGGDNCVRLLPPLNLTLAEASEAVGKLE
                     AACDRARAKAKAAA"
     gene            522..1457
                     /gene="argF"
                     /locus_tag="VHN39_09905"
     CDS             522..1457
                     /gene="argF"
                     /locus_tag="VHN39_09905"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX2816700.1"
                     /translation="MSQAVRHFLDLWKLEGSDLRAILEDAKRRKAARIGWPKGRRDAD
                     AVGDGRTLAMIFEKNSTRTRFSFDAAMRQLGGDVIISNAVDMQLGRGEPIEDTARVLS
                     RMVDAVMIRANNHQDVERLALSSTVPIINGLSDRSHPCQIMADLLTIEEHRGPVAGKT
                     LAYVGDGNNVCASFIHAAPKLGYRLNIAAPAIYHPDLQDLARAAAEQGQVFASDDPRE
                     AVKGADVVITDTWVSMGDTDHDERLDALEPFQVDETLMDLAKGDAVFLHCLPAHRGEE
                     VTDEVIDGPKSLIWDEAENRLHAQKSILAWCFGAI"
     gene            complement(1482..2525)
                     /locus_tag="VHN39_09910"
     CDS             complement(1482..2525)
                     /locus_tag="VHN39_09910"
                     /inference="COORDINATES: protein motif:HMM:NF020037.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HWE histidine kinase domain-containing protein"
                     /protein_id="HEX2816701.1"
                     /translation="MAEQPVAEIVAPTGPAIAALAAPDFRAVFDASPQPLLLMAADAP
                     KYTMLAVNVAHARAFATTPEALVGWGVLEVFGEDPEPSVAPFVEAIRLSLEAVVATRA
                     PHQMAVRPYPVTTPSGEADERYWSAVNSPILGPDGAVIQIVSAVQDVTGEVLERRSEE
                     ARNLLMREVDHRARNALTVVQSFVRLTTAETLQGFRKVLDGRVEALARAQTSLAARRW
                     EGASLRDVIEGELAPLAEAGHYVLEGPQVLLPPEHVQAMSMAIHELATNAAKYGALST
                     RDGRLTVRWRHEDGKVVTVCWAETGGPPVEPPKRAGFGSRLVGQLARQIGGEVRYDWR
                     TDGLSVELDCQLD"
     gene            2648..3307
                     /locus_tag="VHN39_09915"
     CDS             2648..3307
                     /locus_tag="VHN39_09915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding beta-barrel domain-containing
                     protein"
                     /protein_id="HEX2816702.1"
                     /translation="MSSSPSSPFPDDIFTEPQDVDPNTLANLGPLSRLAGVWEGRKGI
                     DLSPKAGGPERREYIERIEMQPIDPQANGPQLIYGLRYHVHINTEEEDITFHDQVGYW
                     LWEPASGLIMQSVAIPRGQVVLAGGQAHPDGSGLAVRAQRGDTAYGIASTPFLEQAFR
                     TDSYEFSVTFDADGSWSYVSDTMLSVRGQPEPFRHRDRNTLVKVAEPTPNPLALIGAS
                     Q"
     gene            3336..4250
                     /locus_tag="VHN39_09920"
     CDS             3336..4250
                     /locus_tag="VHN39_09920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone"
                     /protein_id="HEX2816703.1"
                     /translation="MSSNASSSVPDDAVTAFQIEGEPVRGRLARLGPSVDEILRAHDY
                     PEPVANLLGEACALAALVGSNLKFEGRLIVEARGNGPVRFVVADYDTSGGLRGYCGFD
                     AEQVAAATKGFVQPGAKSLLGEGHFMMTVDQGPDMDRYQGVTAIEGETLALCAEQYFA
                     QSEQTPTRVRLAVGQAPQKDGGLWRAGGMLIQSVAEDDARGSTTEAWVRTQAFFETVG
                     EDELVDPQLSSQQLLFRLFHEDGVRVFGSQPLRAFCRCSQERIENVLRSFDPAERADM
                     VEPDGQIHVTCEYCSKIYAVAPEALETA"
     gene            complement(4410..4961)
                     /locus_tag="VHN39_09925"
     CDS             complement(4410..4961)
                     /locus_tag="VHN39_09925"
                     /inference="COORDINATES: protein motif:HMM:NF028057.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-adhesin E family protein"
                     /protein_id="HEX2816704.1"
                     /translation="MTQIRTALLGVAIWAGLAGAGLCATKAPAKPAIVDPPPPASLGV
                     NDVEAWATAYIDRDMWTLITHDLEGARFVRPEGGKATAPYTIEADIRTELFHPVKMGP
                     GWARSGLAHWSVDCAGTRYSVQSMTIYSHNNLQGELAKKPAADANWMTPNEFQTATIK
                     VICKAVLTGQPPTRLPLAPAKPS"
     gene            complement(5001..>5980)
                     /gene="metZ"
                     /locus_tag="VHN39_09930"
     CDS             complement(5001..>5980)
                     /gene="metZ"
                     /locus_tag="VHN39_09930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016835 - carbon-oxygen lyase activity
                     [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="O-succinylhomoserine sulfhydrylase"
                     /protein_id="HEX2816705.1"
                     /translation="EDRLALLEGADVCRATASGMAAVHVSLQGLLKAGDHLVAGRALF
                     GSCRWIISEWLPRFGIEATYVDATDIDAWKNAVRPNTKAFLVESPANPLLEVTAIGAV
                     AEIAHAAGAKLIVDNVFATPIFQKPLALGADVVVYSATKHIDGQGRVLGGAILGATEL
                     MTESYKDILRHTGPAMSPFNSWILLKSLETLELRVRKQTDNAGRVADVIAAHAKTRQT
                     IYCGRPDHPQAAIIANQMTGGGNVIAFDLGSREAAWRFLDALQIVDISNNLGDAKSMA
                     THPCTTTHRSMPEAERLEIGLTEGWVRMSVGLEGPGDLSRDVSRALDAA"
BASE COUNT          918 a         2113 c         2017 g          932 t
ORIGIN      
        1 ggcaagctct tcgcctacga gtgggcgacg gacgctgccc ccgacatcat ggccatcgcc
       61 aaggcgctgg gcggcggctt cccggtcggc gcgtgcctgg ccaccgccga ggccggccgt
      121 ggcatggtcg tgggctcaca cggctccacc tacggcggca atccgttggc gatggccgtg
      181 gggctggcct cggtcgagga gctggtgaag ccggagctga tggcccacgt ccgcgagatc
      241 gccggctact tcacccagca gttcgaaggc ctgaaggcgc gcttcccgga cgtggtggaa
      301 gacatccgcg gcaagggcct gctgatcggc ctgaagctta agacccccaa ccgcgagttc
      361 atgcagcacg cccgcgacga gcgcctgctg atcgccggcg gcggcgacaa ctgcgtgcgc
      421 ctgctgccgc cgctgaacct caccctggcc gaagccagcg aggccgtggg caagctcgag
      481 gccgcctgcg atcgggcccg cgccaaggcc aaggcggcgg cgtgagccag gccgtccgtc
      541 acttcctcga cctctggaag ctcgaaggct ccgacctgcg cgccatcctg gaggacgcca
      601 agcggcgcaa ggccgcgcgc atcggctggc ccaagggccg ccgcgatgcc gatgcggtgg
      661 gcgatggccg cacactggcg atgatcttcg agaagaattc cacccggacg cgcttctcct
      721 tcgacgccgc catgcgccag ctgggcggcg acgtgatcat ctccaacgcc gtggacatgc
      781 agctcggccg cggcgagccc atcgaagaca ccgcccgtgt gctctcgcgc atggtcgacg
      841 cggtaatgat ccgcgccaac aaccatcagg acgtggagcg cctggcgctc tcctccaccg
      901 tgccgatcat caacgggctg tcggacagga gccatccctg ccagatcatg gcggacctac
      961 tcacgatcga ggagcatcgc gggccggtgg ccggcaagac gctggcctac gtcggcgacg
     1021 gcaacaacgt ctgcgccagc ttcatccacg ccgcgccgaa gctgggctac cggctgaata
     1081 tcgccgcccc cgccatctat caccccgacc tgcaggacct cgcccgcgcg gcggccgaac
     1141 agggccaggt cttcgcctcc gacgacccgc gcgaggcggt caagggcgcc gacgtggtga
     1201 tcacagacac ctgggtctcc atgggcgaca ccgaccatga cgagcgcctc gacgcgctcg
     1261 agccattcca ggtggacgag accctgatgg accttgccaa gggcgacgcg gtcttcctgc
     1321 actgcctgcc ggcccaccgc ggggaggagg tcaccgacga ggtgatcgac ggacccaagt
     1381 cgctgatctg ggacgaggcc gaaaaccgcc tgcacgccca gaagtcgatc ctcgcctggt
     1441 gcttcggcgc gatctgacca ccactttgcc ggcttgggcg gtcagtccag ctggcagtcg
     1501 agttcgacgc tgagcccatc cgtacgccag tcatagcgga cctcgccgcc gatctggcgg
     1561 gccagctggc ccaccagccg ggagccgaag cccgcccgct tgggcggctc gaccggcggc
     1621 ccgccggtct ctgcccagca gacggtgacg accttgccgt cctcatgccg ccagcgcacc
     1681 gtcaggcggc cgtcgcgggt cgagagcgcg ccatatttgg cggcgttggt cgccagctcg
     1741 tggatcgcca tgctcatggc ctgcacgtgc tcgggcggca gcagcacctg cggcccctcc
     1801 agcacatagt ggccagcctc ggcgaggggg gccagctcgc cttcgatcac atccctcagc
     1861 gaggcgcctt cccagcgccg cgcggccagc gaggtctggg cgcgggccag cgcctccact
     1921 cgcccgtcga ggaccttgcg gaatccctgc agggtttccg cggtggtcag gcgcacgaag
     1981 gactgcacca cggtcagcgc attgcgggcc cggtggtcga cctcgcgcat caggaggttc
     2041 cgcgcctcct cgctgcgccg ttcgagcacc tcgccggtga cgtcctgcac ggcgctgacg
     2101 atctggatca ccgcgccgtc gggccccagg atcggtgaat tgaccgccga ccagtagcgt
     2161 tcgtcggcct ctccgctggg cgtcgtcaca gggtagggcc tgaccgccat ctggtgcggc
     2221 gcgcgcgtgg cgacgacggc ctccagcgac aggcggatcg cctcgacgaa gggcgccaca
     2281 gacggctcgg gatcttctcc gaagacctcc agcacgcccc agccgaccag ggcctccggc
     2341 gtggtggcga aggcccgcgc atgggccacg ttcacggcca gcatggtgta cttcggcgca
     2401 tccgccgcca tcagcagcag aggctgcggc gaggcgtcga acaccgcccg gaagtccggc
     2461 gccgccaagg ccgcgatggc ggggcctgtt ggcgcgacga tctcggctac cggctgctcg
     2521 gccaagctcg atctccttcg tcccccgagg tcgctaggcg ccccaagcgc cagctcctgt
     2581 caaggtgaag gcctgcgcgg tcgccgatgc tcgccatcca gccatgtcgc cgctatatcc
     2641 gcgattcatg agcagcagcc cgtcttcgcc ctttccggac gacatcttca ccgagccgca
     2701 ggacgtcgat ccgaacacgc tcgccaacct gggcccactc tcccggctgg ctggcgtctg
     2761 ggaaggccgc aagggcatcg accttagtcc caaggccggg gggcccgagc gccgggagta
     2821 cattgagcgc atcgagatgc agccgatcga cccccaggcc aacgggccgc agctgatcta
     2881 tggcctgcgc taccacgtgc acatcaacac cgaggaagag gacatcacct tccacgatca
     2941 ggtgggttac tggctgtggg agcccgcgag cggtctcatt atgcaaagcg tagcgatccc
     3001 gcgcggtcag gtggttctgg cgggtggcca ggctcacccc gacggctcgg gtctggccgt
     3061 gcgcgcccag cgcggcgaca ccgcctacgg catcgcctcg acgccattct tggagcaggc
     3121 cttccgcact gactcctacg agttttcggt gaccttcgac gccgacggca gctggagcta
     3181 cgtctccgac accatgctga gcgtccgcgg ccagcccgag cccttccgcc accgtgaccg
     3241 caacacgctg gtgaaggttg ccgagccgac gcccaatccc ctggccctga tcggcgcctc
     3301 gcaatagcgc cccgttcgcc ctatatgcgc cggccatgag ttccaacgct tcctcctccg
     3361 ttcccgacga tgccgtcacc gccttccaga tcgagggcga gccggtgcgc ggccgcctgg
     3421 cgcggctggg cccgtcggtc gacgagatcc tgcgcgccca cgactatccc gagccggtgg
     3481 ccaacctgct gggcgaggcc tgtgcgctgg ccgccctggt cggctccaat ctgaagttcg
     3541 aggggcggct gatcgtcgag gcgcgcggca atggtcctgt gcgtttcgtg gtcgccgact
     3601 acgacacctc cggcggcttg cgcggctact gcggttttga cgccgagcag gtggccgccg
     3661 cgaccaaggg cttcgtccag cccggggcga aatccctgct gggcgagggc cacttcatga
     3721 tgaccgtgga tcagggcccg gacatggacc gctaccaggg cgtcaccgcc atcgagggcg
     3781 agacgctggc gttgtgcgcc gagcagtatt tcgcccagtc cgaacagacg ccgacgcggg
     3841 tgcggctggc cgtgggccag gcgcctcaga aggatggtgg cctgtggcgc gccggcggca
     3901 tgctgatcca gtccgtcgcc gaggacgacg cgcggggctc gaccaccgag gcatgggtcc
     3961 gcacccaggc cttcttcgag acggtcggcg aggacgaact ggtcgatccg cagctgtcgt
     4021 cgcagcagct cctcttccgc ctgttccacg aggacggggt ccgggtcttc ggctcccagc
     4081 cgctgcgggc cttctgccgc tgcagccagg agcggatcga gaacgtcttg cggtccttcg
     4141 atcccgccga gcgcgccgac atggtcgagc ccgacggcca gatccacgtc acgtgtgagt
     4201 actgctcgaa gatctacgcc gtggcgccgg aggcgctgga gaccgcctag tgcgctggat
     4261 ctgaaattcg cctttctcca ggcccaagct ctgagcgaac ttcagatccg aagaagcaca
     4321 ctagaaaccc acacttgcta gtgtcctcat cgattccgaa gttcgtccgg cgcccgccgc
     4381 gagcgcttgc gaacttcgga atcgcgacac taggacggct tggcaggcgc cagcggcagg
     4441 cgcgtcgggg gctgcccggt gagcaccgcc ttgcagatca ccttgatcgt cgcggtctgg
     4501 aattcgttgg gcgtcatcca gttggcgtca gcggcgggct tcttggccag ttcgccctgc
     4561 aggttgttgt ggctgtagat ggtcatgctc tgcaccgagt agcgggtgcc cgcgcaatcc
     4621 acggaccagt gcgccagccc tgaacgcgcc cagccgggcc ccatcttcac cgggtggaac
     4681 agttcggtgc ggatgtcggc ctcgatggtg tagggcgcgg tggccttgcc gccctcgggc
     4741 cgcacgaagc gcgcgccctc cagatcgtgc gtgatcaggg tccacatgtc gcgatcgata
     4801 taggccgtgg cccaggcctc gacgtcgttg acccccaggc tggcgggtgg cggcggatcg
     4861 acgatggcgg gcttggccgg agccttcgtc gcgcaaagtc ccgcgccggc caggcccgcc
     4921 catatcgcca cgcccagcag agcggtccgt atctgcgtca tgacggccat agtcgcacga
     4981 acggccgcgc ggacgaaggc ctaggccgcg tccagcgcgc gggaaacatc ccgactgagg
     5041 tcgcctggcc cttccaggcc cacgctcatc cgcacccagc cctcggtcag gccgatctcc
     5101 agccgctcgg cttccggcat cgagcggtgg gtggtggtgc aggggtgggt cgccatcgac
     5161 ttggcgtcgc cgaggttgtt ggagatgtcg acgatctgca gcgcatcgag gaaccgccag
     5221 gcggcctcgc gagaccccag gtcgaaggca atcacgttgc cgccgccggt catctggttg
     5281 gcgatgatcg cggcctgcgg gtgatcgggc cggccgcagt agatggtctg gcgggtcttg
     5341 gcgtgcgcgg cgatcacgtc ggccacgcgg ccggcgttgt cggtctgctt gcgcacccgc
     5401 agctccaggg tctccagcga cttcagcagg atccaggaat tgaacggcga catggccgga
     5461 cccgtgtggc gcaggatgtc cttgtaggac tcggtcatca gctccgtggc gcccaggatc
     5521 gcgcccccca gcacccggcc ctggccgtcg atgtgcttgg tggccgaata gacgaccacg
     5581 tcagcgccca gggccagcgg cttctggaag atcggggtgg cgaagacgtt gtcgacgatc
     5641 agcttggcgc cggccgcgtg cgcgatctcg gccaccgccc cgatggcggt gacctccagc
     5701 agcggattgg ccgggctctc caccaggaac gccttggtgt tgggccgcac ggcgttcttc
     5761 caggcgtcga tgtcggtggc gtccacatag gtcgcctcga tcccgaagcg cggcagccat
     5821 tcggagatga tccagcggca ggagccgaag agggcgcggc ccgccaccag gtggtcgccg
     5881 gccttgagca ggccctgcag cgacacatgc accgccgcca tgccggacgc ggtggcgcgg
     5941 cagacgtcgg cgccttccag cagggccagc cggtcctcga
//
LOCUS       DATAJL010000514         1737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94002,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000514 DATAJL010000000
VERSION     DATAJL010000514.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1737
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94002"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(348..1556)
                     /locus_tag="VHN39_09935"
     CDS             complement(348..1556)
                     /locus_tag="VHN39_09935"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX2816706.1"
                     /translation="MSLQVTSEAEKTPTQGLIRVNYGLHSEAPCEATLEVTVGGARQP
                     AWRKAIALAAGQPQDTWLALHGHLLPNGPAKISVRLLDGRTVLAERNLTVQVRNEGET
                     ARRVAASLRASGVPLAIDGEIDSSLYDYADPSLTAWFDRGPEAVEAHLAGLAARGEAN
                     AEEIAALRHFAEEGYLVLPGRIDAEHIGRLNAALDDAVARKVEGYEWGASQRLHDLHL
                     SYPAIHELWLHPKILQMLGLVFGEAAKPSQSLTYVFGSEQQHHQDVVHLTPFPQGLMC
                     GVWTALEDVQPESGELLLYPRSHKLNRVYMASVGARKVGEDWTEFVEIVAGRWGEMIE
                     ASDLGQKVYRPKAGEVLIWHENLMHGGMVRQDKTKSRRSIVGHYFANGSIVYADSFGL
                     PGRVYEAGTA"
BASE COUNT          262 a          625 c          572 g          278 t
ORIGIN      
        1 gcgtgggata ttcggtcaga taggcctcgc cgtcgaagcc cagcgacacc agggccgccg
       61 cgacgcgcgc ggccgggtct ggctcgggcg cggccggctc cggttcaggc gcagggtcag
      121 gcgcgcgtcc cggccatccc aggcgccgcg ccagtcggat cgcgaggttc gccatcgcca
      181 cgccgcctag tgtcccgatt ccgaagttcg caagcgctcg cggcaggctc ggacgaactt
      241 cggaatcgat gaggacacta gcaagctcct gtttctagtg tgcttcttgg atctgaagtt
      301 cgctccgcgt tcgatccatc aatcaggcga acttcagatc cagcacacta ggcggtccca
      361 gcctcgtaga cgcgcccggg caaaccgaag gagtcggcgt agacgatgga gccgttcgcg
      421 aaatagtggc cgacgatcga gcggcgcgac ttcgtcttgt cctgccgcac catgccgccg
      481 tgcatcaggt tctcgtgcca gatcagcact tcgccggcct tgggccgata gaccttctgc
      541 cccaggtcgc tggcctcgat catctcgccc cagcgccccg ccacgatctc aacgaactcg
      601 gtccagtcct cgcccacttt ccgggcgccg accgaggcca tgtagacccg gttcagcttg
      661 tggctcctgg ggtagagcag gagctcgccg gactccggct gcacatcctc cagcgccgtc
      721 cagacgccgc acatcagccc ctgcgggaac ggggtcaggt ggacgacgtc ctggtggtgc
      781 tgctgctcgg acccgaagac ataggtcagc gactggctgg gcttggcggc ctcgccgaac
      841 accaggccca gcatctgcag gatcttgggg tgcagccaaa gttcgtggat agcgggatag
      901 ctcaggtgca ggtcgtgcag ccgctggctc gcgccccact cgtagccctc gaccttgcgc
      961 gccaccgcat cgtccagcgc cgcgttcagc cgcccgatgt gctcggcgtc gatcctgccg
     1021 ggcagcacca gatagccctc ttccgcgaag tgccgcagcg ctgcgatctc ctcggcgttc
     1081 gcctcacccc gcgcggccag gcccgccaga tgcgcctcga ccgcctcggg cccgcggtcg
     1141 aaccacgccg tgagcgaggg gtcggcatag tcgtagagac tgctgtcgat ctcgccgtcg
     1201 atcgccagcg gaacgcccga agcccgcaga ctggccgcca cccggcgcgc ggtctcgcct
     1261 tcgttgcgca cctggaccgt caggttgcgc tcggccagca ccgtgcgccc gtcgagcagc
     1321 cgcacgctga tcttcgccgg cccgttcggg agcaggtgcc catgcagagc cagccaggtg
     1381 tcctgcggct ggccggccgc cagcgcgatg gccttgcgcc acgcgggctg gcgagccccg
     1441 cccaccgtca cctccagcgt cgcctcgcac ggcgcctccg agtgcaggcc gtaattcacg
     1501 cggatcagcc cctgcgtcgg ggtcttctcg gcctccgacg tgacctgcag gctcacggga
     1561 ggggcgcggc tcttgcggcc agaaaacaag ctaagcaatg gggggacctg gcgaaacgcg
     1621 ttgtgcgggc caggacacac cggccctgac cgcgggtcaa gcggggccgg cgggcgcggc
     1681 ggtcgccttt gagggcaaat ctgacctgga atcgcccagt ctgcgcgcgg cttgggc
//
LOCUS       DATAJL010000515         1593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_8987,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000515 DATAJL010000000
VERSION     DATAJL010000515.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8987"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..567
                     /locus_tag="VHN39_09940"
     CDS             <1..567
                     /locus_tag="VHN39_09940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused MFS/spermidine synthase"
                     /protein_id="HEX2816707.1"
                     /translation="TFFEIDPLVIRISSNPAHFSYTTLCAKGAVNYVLGDARLTLAEQ
                     PTDIYDVLLIDAFSSDAVPTHLLTVQAVRGYLTHLKPDGVLILHLSNRNLDLNGPAQA
                     VAKAAGGVALIQHYRPAPGADMGGWPSAEDAVIVARSPAGLARFAHDARWRATRPDRV
                     RPWTDDYTNLFGALWRRLLQRMDPHGEG"
     gene            complement(572..>1593)
                     /locus_tag="VHN39_09945"
     CDS             complement(572..>1593)
                     /locus_tag="VHN39_09945"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEX2816708.1"
                     /translation="AGADEVVVVVSADRLDSTAEAFQGLRGWRVVAGGKTRAQSVQAG
                     LAALSCDGAQPVLVHDAARPFVTGAHVARLLAALESADGAVPALPVPDTLKRGEGLIA
                     ATVSREGLWRAQTPQAFRFDTLVAAYRAWPAGEEPTDDASVVERAGGQVAMVAGDPML
                     MKLTYPEDFAMAEKLAGARRIVRTGLGIDAHRFGPGEAVMLGGVRIAHDQGLVGHSDA
                     DAGLHALTDALLGAIAEGDIGQHFPPSSPEWKGVSSDRFLLHAVKLAQAKGGQIVHAD
                     LTLICERPKIGPHRDAMRARIAELLGLSIDRVSVKATTTEGMGFTGREEGLMAQAVVS
                     VEMPA"
BASE COUNT          250 a          575 c          543 g          225 t
ORIGIN      
        1 actttcttcg agatcgaccc gctggtgatc aggatctcca gcaatccggc gcacttcagc
       61 tacacgacgc tgtgcgccaa gggggccgtg aactatgtgc tgggtgacgc gcggctgacg
      121 ctggcggagc agcccacgga catctacgac gtcctgctga tcgacgcctt ctcctcggac
      181 gcggtgccga cccacctgct tacggtccag gccgtgcggg gatacctgac ccatctcaag
      241 cccgatgggg tgctgatcct gcacctctcc aaccgcaacc tcgacctcaa cgggccggcg
      301 caggcggtgg ccaaggcggc gggcggcgtg gccctcatcc aacactaccg tccggccccg
      361 ggcgccgaca tgggcggctg gccatcagcc gaggatgcgg tgatcgtcgc gcggtcgccc
      421 gcgggtctcg cccggttcgc ccacgacgcg cgctggcggg ccacccggcc cgacagggtc
      481 cggccctgga cggacgacta caccaacctc ttcggcgcgc tctggcgccg gctgctgcag
      541 aggatggacc cccacggcga gggctgaggg gctaggccgg catctccacc gacaccaccg
      601 cctgggccat caggccctct tcgcggcctg tgaagcccat gccctctgtc gttgtggcct
      661 tgacgctcac ccggtcgatg gaaaggccca gaagttcggc gatgcgcgcg cgcatggcgt
      721 cgcggtgcgg accgatcttc ggccgctcgc agatcagggt caggtcggca tggacgatct
      781 gcccgccctt ggcctgcgcc agtttcaccg cgtgcagcag gaaccggtcg gaggagacac
      841 ccttccattc cggagaggag ggcgggaagt gttggccgat atcgccctcg gcgatggcgc
      901 ccagcaaagc gtcagtgagc gcatgcagtc ccgcatcggc gtcggaatgg ccgaccaggc
      961 cctggtcgtg ggcgatccgc accccgccca gcatcacagc ctcgcccggc ccgaaccgat
     1021 gggcgtcaat gcccaggccg gtccgcacga tccgccgcgc gcccgccagt ttctcggcca
     1081 tcgcgaaatc ctccgggtaa gtcagcttca tcagcatggg atcgcccgcg accatggcta
     1141 cctggccgcc ggcgcgctca acgaccgaag cgtcgtcggt gggctcctcg ccggcgggcc
     1201 aggcccggta ggcggcgacc agggtgtcga accggaaggc ctgcggggtc tgggcgcgcc
     1261 aaaggccctc gcggctaacc gtcgcggcga tcaagccttc gccgcgcttc agagtgtcag
     1321 ggacgggcag ggcggggacc gcaccgtcag cgctctccag ggcggccagc aggcgcgcca
     1381 cgtgggcgcc ggtcacaaag ggccgggcgg cgtcgtggac cagaaccggc tgtgcgccgt
     1441 cgcaagagag ggcggccaag ccggcctgaa ccgactgggc gcgcgtcttg ccaccggcca
     1501 cgacacgcca gcctcggaga ccttgaaagg cttcggccgt tgaatccaga cgatcggcgg
     1561 acacgacgac gacgacctcg tcagcccccg ccg
//
LOCUS       DATAJL010000516         2089 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47661,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000516 DATAJL010000000
VERSION     DATAJL010000516.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2089)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47661"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            275..1027
                     /locus_tag="VHN39_09950"
     CDS             275..1027
                     /locus_tag="VHN39_09950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2816709.1"
                     /translation="MTERGAALITGGARRIGRALVAAAADAGYDVAIHVRSVDDEAEA
                     AAAEVRARGRKAAILVCDLRKEAASVALVGEAEAELGVVRLLVNSASVFEEDAFADMN
                     RASWDAHMETNLRAPLVLAQVFARRLPEGRDGLIVNLLDQRVLKPSPAFFSYSLSKAA
                     LWDATKMLAQALGPRIRVNGIGPGPTLPSAHQDQAAFEAEAGATLLQHPVKSAEIAQA
                     LRYLIEATSVTGQMIAVDAGQHLAPGPEWRRR"
     gene            1027..1398
                     /gene="folB"
                     /locus_tag="VHN39_09955"
     CDS             1027..1398
                     /gene="folB"
                     /locus_tag="VHN39_09955"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004150 - dihydroneopterin aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006760 - folic acid-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEX2816710.1"
                     /translation="MAAGVRTVMTKVFVTGLKVQAEIGVYRHEIGRVQPLVVDVELDV
                     PTSGAERLSDTLNYETILEAARQIAGAGHIELVETFAERLARACLADARVTQARVRVA
                     KPLALAPDAVGAGVEITLARG"
     gene            1461..1859
                     /locus_tag="VHN39_09960"
     CDS             1461..1859
                     /locus_tag="VHN39_09960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816711.1"
                     /translation="MTGQYDYGATEDRTMPAVAYALFLLGFVSVGITSLVGLIMALSN
                     QGQAGPMARSHYTFLTRTFWMGFVWSFLWGCLFGISIPLSFILIGIPLLILSKLMLSL
                     GVVWYGVRCIVGVVFLAQGEPYPRPYSWLI"
     gene            1870..>2089
                     /locus_tag="VHN39_09965"
     CDS             1870..>2089
                     /locus_tag="VHN39_09965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816712.1"
                     /translation="MGPGAKLIPKLLFQLVMVQVVYGLMLFGGAGTLHWPSAWVFLGV
                     IGGASLTVSLWLAWADPALLAERMKPPIQ"
BASE COUNT          304 a          745 c          695 g          345 t
ORIGIN      
        1 gtcgggccgt agcacgaaga tgaagccatc ggtgcgcccg tccagcgcct gcggccagga
       61 ctgcgtatgt gtggcgctcg cgcaccagat gttccccgcg gcgtccacaa gccggttgcg
      121 gctggcgcgg cgcctcgata aagcccggac aagacaattc ggagaccgtc catgatcgcc
      181 atcggtgtca tcgccgcctt catcgccgtg atggcgatcc tcaaccggat cgacttcggc
      241 cggttcgact gaatttgagc cgggcgcgac gccaatgacg gagcgcggcg cggccctgat
      301 cactggcggc gcgcggcgca tcgggcgcgc cctggtcgcc gccgccgccg acgccggcta
      361 tgacgtcgcc atccatgtcc gcagtgtgga cgacgaagcc gaggccgccg cggccgaggt
      421 ccgtgctcgg ggccgcaagg ccgccatcct cgtctgcgac ctgcgcaagg aggctgcgag
      481 cgtggccctg gtgggcgagg ccgaggccga gcttggggtg gtcagactgc tggtcaacag
      541 cgccagcgtc ttcgaggagg acgccttcgc ggatatgaac cgggcctcct gggacgccca
      601 catggagacc aacctgcgcg cgcccctggt gctggcccag gtgttcgccc gccggctgcc
      661 ggaaggccgc gacggcctga tcgtcaacct cctggaccag cgggtgctga agccctcgcc
      721 agctttcttc tcctattccc tctccaaggc cgcgctctgg gacgccacca agatgctggc
      781 ccaggcgctt gggccccgca tccgcgtgaa cggcatcggt ccgggcccta ccctgccgtc
      841 ggcgcaccag gaccaggccg ccttcgaagc cgaagccggc gccaccctgc tgcagcatcc
      901 tgtcaaatcg gccgagatcg cccaggccct gcgctatctg atcgaggcga cctcggtcac
      961 tggccagatg atcgccgtcg acgcgggcca gcaccttgcc cccggaccag aatggcggcg
     1021 gcgctgatgg ccgccggcgt ccgcacggtc atgaccaagg tcttcgtcac cggcctgaag
     1081 gtccaggcgg agatcggggt ctaccggcac gagatcggcc gcgtgcagcc gctggtggtc
     1141 gatgtggagc tcgacgtgcc cacctccggc gccgagcggc tttccgacac cctgaactac
     1201 gagaccatcc tggaggcggc ccgccagatc gccggcgccg gccatatcga gctcgtggaa
     1261 accttcgccg agcgcctggc ccgcgcctgc ctggccgacg ccagagtgac ccaggcccgg
     1321 gtgcgggtgg ccaagcccct ggcgctggcc cccgacgccg tgggcgccgg cgtcgagatc
     1381 acgctggcgc gcggctaaac aaacgctcac tggcgctccg gcgggattga ggcatcatct
     1441 gccccgggag gctcatcgcc atgaccggac aatacgacta cggcgccacc gaggaccgga
     1501 ccatgccggc cgtcgcctat gcgctctttc tgctgggctt cgtgagcgtc gggatcacca
     1561 gcctcgtcgg cctcatcatg gccctgtcga accagggcca ggccggcccg atggcccgca
     1621 gccactacac cttcctgacc cgcaccttct ggatgggctt cgtctggtcc ttcctgtggg
     1681 gctgcctctt cggcatcagc attccgctca gctttatcct gatcggcatt ccgctgctga
     1741 tcctcagcaa gctgatgctg agccttggcg tcgtctggta cggggttcgc tgcatcgtgg
     1801 gcgtggtctt cctggcccag ggcgagccct atccccggcc ctacagctgg ctgatctgag
     1861 gccaaggcca tgggacccgg cgcgaagctg atccccaagc tcctgttcca gctcgtgatg
     1921 gtgcaggtgg tctacggcct catgctgttc ggcggcgcgg gcacactgca ctggccatcg
     1981 gcctgggtgt tcctcggcgt catcggcggc gccagcctga cggtcagcct gtggctggcg
     2041 tgggccgatc cagcgctgct ggcggaacgg atgaagccgc cgattcaga
//
LOCUS       DATAJL010000517         2749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21736,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000517 DATAJL010000000
VERSION     DATAJL010000517.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2749
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21736"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2749)
                     /gene="rpoB"
                     /locus_tag="VHN39_09970"
     CDS             complement(<1..>2749)
                     /gene="rpoB"
                     /locus_tag="VHN39_09970"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEX2816713.1"
                     /translation="LDITSIATLEDLGFTTIDVLDIDGVTVGPYVRNTLRVDKNSVRE
                     DALFDIYRVMRPGEPPTVEAAEAMFKSLFFDSERYDLSSVGRVKMNMRLELDCPDDVR
                     VVRKDDVLAVLKTLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAIK
                     ERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALG
                     PGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHAVVNKYGFIESPYR
                     RIKDGKTTDEVVYMSAMEEAKHVIAQANIKLDNGRIVDDLVPGRINGEPSLLPRADVD
                     LMDVSPKQVVSVAASLIPFLENDDANRALMGSNMQKQAVPLIQTDAPLVGTGMESIVA
                     VDSGAVVVARRSGIVEQIDGTRIVVRATEETDPTQPGVDIYRLQKFQRSNTSTCINQR
                     PLVRVGDRIAAGDVVADGPSTDLGELALGRNTLVAFMPWNGYNFEDSILISERIVRDD
                     IFTSIHIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVLPGDILV
                     GKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVDKD
                     ERALAIERAEIDRLGKDRDDEFAILNRNMTSRLRSLLVGKVAVSGPKGLGRGKIDADK
                     LEEISPGLWWQIALEDEKAMAELEAMRRQFDEARKRLDRRFEDKVDKLQRGDELPPGV
                     MKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKILPIEDMPYLEDGTHVDIVLNPLGVP
                     SRMNVGQIFETHLGWAAAGLGKQVAALMDAWQNGGQRKALVDYLVGTYGKEEELPESD
                     EELLELARNLSKGIPFATPVFDGAHIDDIERLLEEAGLAKSGQVTLVDGQSGEQFKRE
                     VT"
BASE COUNT          413 a          888 c          926 g          522 t
ORIGIN      
        1 cgtgacctca cgcttgaact gctcgcccga ctggccgtcg accagcgtca cctggccgga
       61 cttggcgaga cccgcctcct ccagcagacg ctcgatatcg tcgatgtggg cgccgtcgaa
      121 caccggggtg gcgaagggga tgcccttcga caggttccgg gcgagttcga gcaactcctc
      181 atcgctttcc ggcagttctt cttccttgcc gtaggtgccg accagatagt cgaccagcgc
      241 cttgcgctgt ccaccgttct gccaggcgtc catcagggct gcgacctgct tgccgagacc
      301 ggcggcggcc cagcccagat gggtttcgaa gatctggccg acgttcatgc gcgaaggcac
      361 gcccagcggg ttcagcacga tatccacgtg ggtgccgtct tccagatacg gcatgtcctc
      421 gatcggcagg atcttggaga tgacgccctt gttgccgtga cggccggcca tcttgtcgcc
      481 cggctgcagc ttgcgcttca ccgccacgaa caccttgacc atcttcatca cgccaggcgg
      541 cagttcgtcg ccgcgctgca gcttgtcgac cttgtcctcg aagcggcggt cgagacgctt
      601 gcgggcctcg tcgaactggc ggcgcatggc ctccagctcg gccatggcct tctcgtcttc
      661 cagcgcgatc tgccaccaca ggccgggaga gatttcttcc agcttgtcgg cgtcgatctt
      721 gccgcggccc aggcccttgg gaccagagac ggcgaccttg cccaccagca gcgagcgcag
      781 gcgcgaggtc atgttgcggt tcaggatggc gaactcgtcg tcgcggtcct tgcccaggcg
      841 gtcgatctcg gcgcgttcga tggccagggc gcgttcgtcc ttgtcgacgc cgtgccggtt
      901 gaacacccgg acttccacga tcgtcccggc gacgcccggg ggcaggcgca gggaggtgtc
      961 gcggacgtcg gaggccttct cgccgaagat ggcgcgcagc agcttttctt ccggggtcat
     1021 cgggctttcg cccttgggcg tgaccttgcc caccaggatg tcgcccggca ggacctcggc
     1081 gccgatcgcc acgatgccgg cttcgtcgag gttgcgcagg gcttcctcgc cgacgttggg
     1141 gatatcgcgg gtgatctctt ccggacccag cttggtgtcg cgggccatga cctcgaattc
     1201 ctcgatgtgg atcgaggtga agatgtcgtc gcgcacgatg cgctcggaga tcaggatcga
     1261 gtcttcgaag ttgtagccat tccagggcat gaaggcgacg agggtgttac gccccagcgc
     1321 cagttcgccc aggtcggtcg agggaccgtc ggccaccacg tcgccggccg cgatgcggtc
     1381 gcccacacgc accagcggac gctggttgat gcaggtggag gtgttggaac gctggaactt
     1441 ctgcaggcgg tagatgtcga cgccgggttg ggtcgggtcg gtctcttccg tcgcgcggac
     1501 cacgatgcgg gtgccgtcga tctgttcgac gatgcccgag cggcgagcca ccacgacggc
     1561 gccggagtcc acggccacga tcgactccat gccagtgccg accagcggcg catccgtctg
     1621 gatgagcggc acggcctgct tctgcatgtt cgagcccatc agggcgcggt tggcgtcatc
     1681 gttttccagg aacgggatca gcgaggcggc tacggagacc acctgcttgg gcgacacgtc
     1741 catcaggtcg acgtcggcgc gcggcagcag cgagggctcg ccgttgatcc ggccggggac
     1801 caggtcgtcg acgatccggc cgttatcgag cttgatattg gcctgggcga tgacgtgctt
     1861 ggcctcttcc atggccgaca tgtagacgac ctcgtcggtc gtcttgccgt ccttgatccg
     1921 gcggtagggg ctctcgatga agccgtactt gttcaccacc gcgtgggtgg cgagcgagtt
     1981 gatcaggccg atgttcgggc cttccggcgt ctcgatgggg caaatccggc cgtagtgggt
     2041 cgggtgcacg tcgcggactt cgaagcccgc ccgctcgcgg gtcagaccgc ccgggccaag
     2101 cgccgagagg cggcgcttgt gggtgatttc cgacagcggg ttggtctggt ccatgaactg
     2161 cgagagctgc gatgagccaa agaactcgcg cacggccgcg gcggccggct tcgcattgat
     2221 caggtcgtgc ggcatgaccg tgtcgatatc gaccgagctc atgcgttcct tgatggcgcg
     2281 ctccatgcgg agcaggccga cccggtactg attttccaga agctcgccga ccgaacggac
     2341 ccggcggttg ccgaggttgt cgatgtcgtc gatctcgccg cggccgtcac gcaggccgac
     2401 gagcgtcttc agcaccgcca gcacgtcgtc cttgcggacc acgcgcacgt cgtcggggca
     2461 gtcgagttcc aggcgcatgt tcatcttcac gcggccgacg gacgacaggt cgtatcgctc
     2521 actgtcgaag aacagcgact tgaacatcgc ctcggcggct tccaccgtcg gcggctcgcc
     2581 cggacgcatg acccggtaga tgtcgaacag cgcgtcctcg cggaccgagt tcttgtcgac
     2641 ccgcagggtg ttgcgcacgt acggacccac cgtgacgccg tcgatgtcga gcacgtcgat
     2701 ggtggtgaag ccgaggtctt ccagcgtggc gatcgaggtg atgtcgagc
//
LOCUS       DATAJL010000518         2340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21737,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000518 DATAJL010000000
VERSION     DATAJL010000518.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21737"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VHN39_09975"
     CDS             complement(<1..525)
                     /locus_tag="VHN39_09975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEX2816714.1"
                     /translation="MDAELAAATWSPPFGPGDPAPWFEAATPTNPHFHFSTSVGRYML
                     LGFLPSPGPARDAALNAVQAHLGLFDDKKLSTFLVLRDAESIAKARNQPSGLRWFLDA
                     DGAVSRLYGALDIASGRVAAEHPYWLVLDPSHRVLDRFTISNLAGLFAALKTLPEVAD
                     YAGTELFAPVMIVPR"
     gene            complement(525..1586)
                     /locus_tag="VHN39_09980"
     CDS             complement(525..1586)
                     /locus_tag="VHN39_09980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEX2816715.1"
                     /translation="MPLNLGEPAPWFTAPTPSNPEFVFDTVAGRYVLLVFLPKDDTVA
                     SGEALRMLAAHQARFDDEMLSAFAVVRDPGTAASVRDMRGLRWFLDLEGAVSRLYGAL
                     SPDGIESPMWLLLDPTLRTIGRVRLSGAQAIFDYIARLEPPSEHARTPLHAPVLMAPR
                     IFEPDLCARLIALHEADGGQFTGVMRDEGDRTVAVMDELKKRRDVLVEDPELQAALRD
                     RLERRLFPMIARALGFAVTRIERYVVSCYDAADGAVFHPHRDSTTFGTAHRKFACSLN
                     LNEGFTGGDLRFPEYGSRTYRPPPGGAVVFSCAMLHEATRVTAGRRYAFLPFFYDEAG
                     AATQAAYRARVGAPAEPAA"
     gene            1769..>2340
                     /locus_tag="VHN39_09985"
     CDS             1769..>2340
                     /locus_tag="VHN39_09985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEX2816716.1"
                     /translation="MTDEHTTPPADRHGGIAPVAIEDELKRSYLDYAMSVIVSRALPD
                     VRDGLKPVHRRILYSMGEQGHTPDRSYVKCARVVGDVMGKYHPHGDVAIYDTLVRMAQ
                     PFSMSLLLIDGQGNFGSVDNDPPAAMRYTECRMTKAAMSILADLDKDTVDFKDNYDGS
                     EHEPMVLPSRIPNLLVNGAGGIAVGMATNIP"
BASE COUNT          408 a          788 c          815 g          329 t
ORIGIN      
        1 ccgcggcacg atcatcaccg gagcaaagag ctcggtcccg gcatagtcgg caacctcggg
       61 gagcgtcttc agggctgcga acaggccggc caggttggag atcgtgaacc ggtccaggac
      121 gcggtgggac ggatcgagca ccagccagta ggggtgttcg gcggccacgc gccccgaggc
      181 gatgtccagg gcgccataga gccggctcac cgccccatcg gcgtccagga accagcgcag
      241 gcccgacggc tggtttcgcg ccttggcgat cgactcggcg tcccgcagca ccaggaaggt
      301 cgacagcttc ttgtcgtcga acaggccgag gtgcgcctgg acggcgttga gtgcggcgtc
      361 gcgcgcgggt cctggagacg gcaggaagcc cagcagcatg tagcggccga cgctggtgct
      421 gaaatggaaa tgcggattgg tgggcgtcgc cgcctcgaac cagggcgcgg ggtcccccgg
      481 gccgaacggc ggcgaccagg tcgcggcggc gagctcagcg tccatcaggc agcgggctct
      541 gcgggcgcgc cgacgcgggc gcgataggcc gcctgggtcg ccgcgccggc ttcatcgtag
      601 aagaacggca ggaaggcata gcggcgcccg gcggtgaccc gggtcgcttc gtgcagcatg
      661 gcgcaggaga agaccacggc cccgcccggc ggcgggcggt aggtccgtga gccgtactcc
      721 gggaagcgca ggtcgccgcc cgtgaagccc tcgttgaggt tgagcgagca ggcgaacttg
      781 cggtgcgcgg tgccgaaggt cgtggaatcc cggtgggggt gaaagacagc gccgtcagcc
      841 gcgtcgtagc agctcacgac gtaacgttcg atgcgggtca cagcgaagcc gagcgcccgg
      901 gcgatcatcg ggaacaggcg ccgctccagc cggtcgcgca gggccgcctg cagttcagga
      961 tcctccacca ggacgtcgcg gcgtttcttg agctcgtcca tgaccgcgac cgtccgatcg
     1021 ccctcatcgc gcatcacgcc ggtgaactgg ccgccgtcgg cctcgtgcag cgcgatgagc
     1081 cgcgcacaga ggtccggctc gaagattcgc ggcgccatca gcaccggcgc atgcaaaggc
     1141 gtcctcgcat gctccgacgg cggctccagc cgcgcgatgt agtcgaagat ggcctgggcg
     1201 ccggagagcc gcacccggcc gatcgtgcgc agcgtcgggt cgagcagcag ccacatgggg
     1261 ctctcgatgc cgtccggcga cagggcgcca tagagccggc tcaccgcacc ctccaggtcc
     1321 aggaaccagc gcaggccccg catgtcccga acggaggcgg cggtgcccgg atcgcgcacc
     1381 acagcaaagg cgctcagcat ctcgtcgtcg aaccgcgcct gatgggccgc gagcatccgg
     1441 agggcctcgc cggacgcgac ggtgtcgtcc ttgggcagaa ataccaggag aacataccgc
     1501 ccggcgaccg tgtcgaagac gaactccgga ttggagggcg tcggcgctgt gaaccagggg
     1561 gcgggctcgc cgaggttgag cggcatcagg gaagcggtcc ttgttgggat gcttcttagg
     1621 acgctgccgc gccgcggtca ccgcctgtct caacggctac gtgcacacgt gcgcgcgtac
     1681 gcgcgcacga aagttggcgt ccggggcttc agaatgctaa tcatggaccc cacttaagca
     1741 gtccgattct aacggctaaa tccctccctt gaccgacgaa cacaccacgc ctcccgccga
     1801 ccggcatggg ggcattgcgc ctgtcgccat cgaagacgag ctgaagcgct cgtatctcga
     1861 ctacgccatg agcgtgatcg tgagccgggc gctgcccgac gtgcgcgacg gcctcaagcc
     1921 cgtgcaccgg cgcatcctct attcgatggg cgagcagggc catacgcctg accgcagcta
     1981 tgtgaagtgc gctcgcgtgg tcggcgacgt gatgggcaag taccacccgc acggcgacgt
     2041 cgcgatctac gacaccctgg tccgcatggc gcagcccttc tccatgagcc tgctgctcat
     2101 cgacgggcag gggaacttcg gctcggtgga caacgatccg cccgccgcca tgcgctacac
     2161 cgagtgccgc atgaccaagg cggccatgtc gatcctggcc gacctcgaca aggacaccgt
     2221 cgacttcaag gacaactacg acggctccga gcacgagccg atggtcctgc ccagccggat
     2281 cccgaacctg ctggtcaatg gcgccggcgg catcgcagtc ggcatggcca cgaacattcc
//
LOCUS       DATAJL010000519         4503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_106929,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000519 DATAJL010000000
VERSION     DATAJL010000519.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4503
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106929"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1243
                     /locus_tag="VHN39_09990"
     CDS             <1..1243
                     /locus_tag="VHN39_09990"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF013590.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEX2816717.1"
                     /translation="DWDAYFQATGLGRQADFNLWQPAAVIGGSALAAAEPLEAWKDYL
                     AFHLIEHYAPVLPKAFAEEHLAFAARLSGVAAPDRAAQASAATNAALGEGVGRLYVAR
                     YFPPQAKAAATAMVENIRAAFRARIATAAWMSPQTRDKALAKLATLRIGLGYPETATD
                     YSTLVVVRGDAFGNLRRADAFTWRREVAKLTRPVDVDEWQIPLLRPQTVGALINFSPN
                     SLQFSAGVLQPPYFDPAGDAAANYGSAGAGLAHEVSHTFDELGNIYDAQGRLDRWWAA
                     DDLARYRAAAAPLAAQYDAYCPRPDLCVKGKQAQDENIADLVGLSVAHDAYVASLHGK
                     PDAIKNGLTGDQRFFLSFARRWRRLQTEASLRRQIATDTHAPWEYRADTVRNLEAWRR
                     AFDVKPGDKLYLKPEERIQLW"
     gene            1293..2219
                     /gene="nudC"
                     /locus_tag="VHN39_09995"
     CDS             1293..2219
                     /gene="nudC"
                     /locus_tag="VHN39_09995"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000210 - NAD+ diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HEX2816718.1"
                     /translation="MALDTFLNTFAGNPLDRASDRRAKPEWIAEQLASSESLGIALWN
                     GRPFVEASKEGGLQIAYLPAKLVAELAGGPERLLFMGLWKDTAVFAVDLEGVADPAEG
                     PLHGFGAFEDLRAVALKLPATEAAIVATAKQMFEWRRRHQHCAVCGQRSEAQDGGWKR
                     KCPACEAEHFPRTDPVVIMLPFHGDRCMLGRQEQWPKGMFSALAGFLEPGESIEEACA
                     RELNEEAGLRARKVRYHSTQPWPYPSSLMIGLIAEVEDDEGVPDQAELSEIRWFTRDE
                     ARDLIAGKLDGVAAPQRLAIAHQLIKAWVEEG"
     gene            complement(2221..3066)
                     /locus_tag="VHN39_10000"
     CDS             complement(2221..3066)
                     /locus_tag="VHN39_10000"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEX2816719.1"
                     /translation="MSKGRIAFQGELGANSHEACTAAFPDYQPVPHATFEEAFDAIKT
                     GDCQLGMIPVENSIAGRVADVHHLLPSSGLKIIGERFKPIHFHLMANPGVALDDVKTV
                     ASMAIALGQCRKFVRRHRLKTESVGDTAGAARMLSQHPDPTRAAISPALAAEIYGLEI
                     LARDIEDEHHNTTRFLIMTAEKHPKPPPFTEPCITSFTFKVRNIPASLYKAMGGFATS
                     GVNISKLESYMEGGAWSATFFYAEADGRPEDRGLALAFEELGFFAEKFEILGVYPADP
                     FRTRG"
     gene            complement(3063..3800)
                     /locus_tag="VHN39_10005"
     CDS             complement(3063..3800)
                     /locus_tag="VHN39_10005"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEX2816720.1"
                     /translation="MNPIVLIPARMAATRLPGKPLADIAGVPMIVRVLRQAEAAGVGP
                     VAVAAGDSAIVDAVRAAGGQAVLTDPDLPSGSDRIVAALAELDPTGRHDVVVNLQGDI
                     PFVRPDAVQAVTRLLAAQPTCDISTVMVAEADPGERTNPDIPKVVAAMEADGRTARAL
                     YFTRSVLYGDAPVWLHHGIYGFRREALERFCAAAPSPLERRERLEQLRALELGMSIWA
                     AVIDEAPISVDNPADLERARAHARTLS"
     gene            3936..>4503
                     /locus_tag="VHN39_10010"
     CDS             3936..>4503
                     /locus_tag="VHN39_10010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c family protein"
                     /protein_id="HEX2816721.1"
                     /translation="MSDLTFNKYAGAVLATAFVIAGLVQLSGGVFGEEKVAKPGFAVA
                     VVEDTGGAAAVADVPPDWGTVLKTADVSAGQATFAKCQSCHNADSGGPNGTGPNLWGV
                     VGRAPGSHAGFAYSDGMKGFAAKQPIWDYQHIYEFVKGPQAYIAGTKMTFVGLKQPQD
                     RINVIAFLRDHGGTLPIPAPNPAAAAAPA"
BASE COUNT          692 a         1617 c         1528 g          666 t
ORIGIN      
        1 ggactgggac gcctattttc aggccaccgg tctggggcgg caggcagact tcaatctctg
       61 gcagccggcg gcggtgatcg gcggatccgc cctggcggcc gccgagcctc tggaggcgtg
      121 gaaggactat ctcgccttcc atctcatcga gcactacgcg ccggtgctgc ccaaggcctt
      181 cgccgaagag catctggcct tcgccgcccg cctctccggg gtcgccgcgc cggaccgcgc
      241 cgcccaggcc agcgcggcca ccaacgccgc gctcggcgaa ggggtcggac ggctctacgt
      301 cgcgcgttat ttcccgcccc aggccaaggc cgcggccacc gccatggtgg agaatatccg
      361 cgccgccttc cgcgcccgca tcgccacggc cgcctggatg tcgccgcaga cgcgcgacaa
      421 ggccctggcc aagctggcga cgctgcggat cgggctgggc tatcccgaga ccgcgaccga
      481 ctattcgacg ctcgtcgtcg tccggggtga cgccttcggc aacctgcgcc gggccgacgc
      541 cttcacctgg cggcgcgaag tagccaagct cactcggccg gtggacgtgg acgaatggca
      601 gatcccgctc cttcggccgc agacggtagg ggctctgatc aacttcagtc cgaattccct
      661 gcagttttcg gccggggtcc tgcagccccc ctatttcgat cccgcgggcg acgcggccgc
      721 caactacggc tccgccggcg ccggcctcgc ccacgaggtc agccacacct tcgacgagct
      781 ggggaatatc tacgacgctc agggtcggct ggaccgctgg tgggcggccg acgatctcgc
      841 ccgctaccgg gccgccgcgg cgccgctggc cgcccagtac gacgcctatt gcccgaggcc
      901 ggatctctgc gtgaagggca agcaggcgca ggatgagaat atcgccgatc tggtgggcct
      961 gagcgtggcc cacgacgcct acgtcgcgtc gctgcacggc aagccggacg ccatcaagaa
     1021 cggcctgacc ggcgaccagc ggttcttcct gtcgttcgcc cggcggtggc ggcgattgca
     1081 gaccgaggcg tcgctgcgcc ggcagatcgc caccgatacg catgcgccct gggaataccg
     1141 cgccgacacg gtccgcaacc tggaggcctg gcgccgcgcc ttcgacgtca agcccggcga
     1201 caagctctat ctcaagcccg aagagcgcat tcagctctgg tgaggcggct ggcgcacatg
     1261 acgcgtgcgc tgcagcacgc tagaacgccc ggatggccct cgacaccttc ctgaacacct
     1321 tcgccggcaa tcccctcgac cgcgccagcg accggcgcgc caagcccgaa tggatcgccg
     1381 aacagctcgc ctcctcggag tcgctcggca tcgcgctctg gaacggtcgg cccttcgtcg
     1441 aggcctcaaa agaaggcggc ctgcagatcg cctacctgcc ggccaagctg gtggccgagc
     1501 tggccggcgg gccggagcgg ctgctgttca tgggcctctg gaaagacacc gccgtcttcg
     1561 ccgtcgacct ggagggcgtg gccgacccgg ccgaggggcc gctgcacggc ttcggcgcct
     1621 tcgaggacct cagggccgtg gccctgaaac tgcccgccac cgaggccgcc atcgtggcca
     1681 ccgccaagca gatgttcgaa tggcgccgcc gacaccagca ctgcgcggtt tgcggccagc
     1741 gcagcgaggc ccaggacggc ggctggaaac gcaaatgccc ggcctgcgag gccgagcact
     1801 tcccgcgcac cgacccggtg gtgatcatgc tgccctttca cggcgaccgc tgcatgctgg
     1861 gccggcagga acagtggccc aagggcatgt tctcggccct ggcgggcttc ctggagcccg
     1921 gggagagcat cgaggaggcc tgcgcccgcg aactgaacga agaggccggc ctgcgcgccc
     1981 gcaaggtccg ctaccactcc acccagccgt ggccctatcc gtcgtcgctg atgatcggcc
     2041 tgatcgccga ggtggaggac gacgagggcg tccccgacca ggccgaactc tccgaaatcc
     2101 gctggttcac gagggacgag gcccgcgacc tgatcgccgg caagctcgac ggcgtcgccg
     2161 ccccccagcg cctggccatc gcccaccagc tcatcaaggc ctgggtcgaa gagggctagg
     2221 ttatccccgc gtcctaaatg ggtccgccgg atagaccccc aggatctcga atttctcggc
     2281 gaagaagccc agctcctcga acgctagcgc caggccgcgg tcctcgggcc gcccgtccgc
     2341 ctcggcgtag aagaaggtcg ccgaccaggc gccgccttcc atgtagctct cgagcttcga
     2401 gatgttcacg ccgctggtcg cgaacccgcc catggccttg tagagcgagg ccgggatgtt
     2461 gcgcaccttg aaggtgaagc tggtgatgca gggctcggtg aagggcggcg gcttcgggtg
     2521 cttttcggcc gtcatgatca ggaagcgggt ggtgttgtgg tgctcgtcct cgatgtcgcg
     2581 ggcgaggatt tcgaggccgt agatctccgc ggccagggcc ggtgagatcg ccgctcgcgt
     2641 cgggtctggg tgctggctca gcatgcgggc cgcgcccgcc gtatcgccca ccgactcggt
     2701 cttcagccgg tggcgacgga cgaacttgcg gcattggccc agcgcaatgg ccatgctggc
     2761 gacggtcttg acgtcgtcca gcgcgacgcc gggattggcc atcaggtgga aatggatcgg
     2821 cttgaaccgc tcgccgatga tcttcaggcc ggaggacggc aagaggtggt gcacgtcggc
     2881 cacacgcccg gcgatggaat tctccaccgg gatcatgccc agctggcagt cgccggtctt
     2941 gatggcgtcg aacgcctcct cgaaggtggc gtgcgggacc ggctggtagt ccgggaaggc
     3001 cgcggtgcag gcctcgtggc tgttggcgcc caattcaccc tggaaggcga tacgtccctt
     3061 gctcatgaga gcgtcctagc atgcgcgcgc gcgcgctcaa ggtccgccgg gttgtccacc
     3121 gagatcggcg cctcgtcgat caccgccgcc cagatcgaca tcccaagctc cagcgcccgc
     3181 agctgctcca gccgctcgcg cctctccagg ggcgagggcg cagcggcgca gaaccgctcc
     3241 agcgcctcgc ggcggaagcc gtagatcccg tgatgcagcc acaccggcgc gtcgccatag
     3301 agcaccgagc gggtgaaata gagcgcgcgc gccgtgcggc catcggcttc catcgccgcc
     3361 acgaccttgg ggatatcggg attggtccgt tcgccggggt cggcctcggc caccatcacc
     3421 gtggagatgt cgcaggtcgg ctgggccgcc agcagccgcg tcaccgcctg cacggcgtcg
     3481 ggccgcacga acggaatgtc gccctgcagg ttgaccacca cgtcgtggcg ccccgtcgga
     3541 tcgagctcgg ccagcgccgc cacgatccgg tcggagcccg agggcaggtc ggggtcggtc
     3601 agcactgcct gaccgcccgc cgcgcgcacc gcgtccacga tcgccgaatc gcccgccgcc
     3661 accgccacgg gccccacgcc ggcggcctca gcctgcctca gcacgcggac gatcatcggt
     3721 acgccggcga tgtcggccag cggcttgccg ggcaggcggg tcgcggccat gcgcgcgggg
     3781 atgaggacga tcgggttcat tgctgggctt ggacacgctt gggcggttgc gcgagcgccg
     3841 gtagcgtgta agagagccgg acgcaacaag gggcgggatt cccgcacttt cgccggcctc
     3901 ccgcgccggt cgtacagagg gccgatttcg ggacaatgag cgacctgacc ttcaacaaat
     3961 acgccggcgc cgtgctcgcg acggccttcg tcatcgccgg gcttgttcag ctctccggcg
     4021 gcgtcttcgg cgaggaaaag gtcgccaagc ccggcttcgc ggtcgcggtg gtggaagaca
     4081 ccggcggcgc tgcggccgtc gccgacgttc cgcccgactg gggcacggtg ctcaagaccg
     4141 ccgacgtctc cgccggtcag gcgaccttcg ccaagtgcca gtcctgccac aacgccgaca
     4201 gcggcggccc caacggcacc ggccccaacc tctggggcgt cgtgggccgc gcgccgggca
     4261 gccacgcggg cttcgcctat tccgacggga tgaagggctt cgccgccaag cagccgatct
     4321 gggactacca gcacatctat gagttcgtga aaggcccgca ggcctatatc gccggcacca
     4381 agatgacctt cgtgggcctg aagcagccgc aggaccggat caacgtgatc gccttcctgc
     4441 gcgaccacgg cggaaccctg ccgatcccgg cccccaaccc ggccgccgcg gccgctccgg
     4501 ccg
//
LOCUS       DATAJL010000520         1946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_58973,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000520 DATAJL010000000
VERSION     DATAJL010000520.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_58973"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..419
                     /locus_tag="VHN39_10015"
     CDS             <1..419
                     /locus_tag="VHN39_10015"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2816722.1"
                     /translation="LAACRELALRASMLMDANDGPAMAALFTPDLIFIRPTTWPQATI
                     RSRDALVAAIAARPAGLVSRHLLTNLLATRLDSDTVQVRSYFTHFSGTGPPDALGALP
                     LAGALRSLGEYEDQMVRTAAGWRIARRVGRFAFGGA"
     gene            558..1562
                     /locus_tag="VHN39_10020"
     CDS             558..1562
                     /locus_tag="VHN39_10020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003044989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HEX2816723.1"
                     /translation="MKAVGYCEAGGVEVLTDLEIPRPIPGPRDLLVSVRAVSVNPVDV
                     KRRAFEAPAPGSDVRVLGYDASGVVEAVGEAVTLFQPGDEVFYAGAMDRPGTNAEFHL
                     VDERIVGPKPKSLTFAEAAAMPLTTITAWEILFDRMRIPRRAETPTGTLLILNGAGGV
                     GSMMIQLATRLTGLTVIATASRPESAHWVRRLGAEHVADHSRPIDAAIEAIGFGGVDY
                     LAAITTTPGSAPALARAMNPQGHINFIDNFDESIALFKPKSLTISWEMMFTRSLFETP
                     DMAAQHRLLKEVAALVDEGVLKTTLTHVSGPINAEALRAAHLLVESGHTLGKVVLEAA
                     "
     gene            1656..>1946
                     /locus_tag="VHN39_10025"
     CDS             1656..>1946
                     /locus_tag="VHN39_10025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX2816724.1"
                     /translation="MSKLPDFEGLAIFAKVLQMQSFARAAADLQLSKATVSKAVSRLE
                     AKVGTRLFNRTSRRLSLTEAGKQLAERAAHILAEGEVAEAEGIANAAAPRGHI"
BASE COUNT          301 a          690 c          653 g          302 t
ORIGIN      
        1 acctggcggc gtgtcgggaa cttgcgcttc gcgcctcgat gctgatggac gccaacgacg
       61 gtcccgccat ggcggcgctg ttcactccgg acctgatctt catccggccg accacctggc
      121 cgcaggcgac catccgcagc cgcgacgcgc tggtcgccgc catcgccgcg cggccggcgg
      181 gcctggtcag ccgacacctt ctcacgaacc tcctggccac gcggctcgac tcggacacgg
      241 tccaggtgcg gtcgtacttc acccacttca gtgggacggg tccgccggat gccctggggg
      301 ccctgcccct ggcgggcgct ctgcgctcgc tcggcgagta tgaggaccag atggtgcgca
      361 ccgccgccgg ctggcggatc gcgcgccggg tcggccgctt cgcgttcggc ggcgcctgag
      421 ggatcgccgc gcctcgcggc gcgggtgggc ccatgtcgcc cagatcgaaa cccagcgttc
      481 cgcgttgcgg cgttctccgg agccggccgc cgccccacct gtgtctgtgc aacccgggac
      541 acttggagag tcaggtcatg aaggcggtcg gctattgcga agcaggcggc gtcgaggtcc
      601 tcaccgatct cgagatcccc cgtcccatac ctggtccacg ggacctgctg gtgtcggtgc
      661 gggcggtctc ggtcaatccg gtcgacgtca agcgacgcgc cttcgaggcg ccggcgcccg
      721 ggtccgacgt ccgggtgctc ggctatgacg cctccggggt ggtcgaggcg gtcggcgagg
      781 cggtcaccct cttccagccg ggcgatgagg tgttctacgc aggcgccatg gaccgacccg
      841 gcaccaatgc cgagttccac ctcgttgacg agcggatcgt cggccccaag cccaagagcc
      901 tgacatttgc ggaggcggcg gccatgccgc tgaccaccat taccgcctgg gagatactgt
      961 tcgaccgcat gcgcatcccc cgccgcgccg agaccccgac agggaccctg ttgatcctca
     1021 atggcgcggg cggcgtcggg tccatgatga tccagctggc gactcggctc acgggcctga
     1081 cggtcatcgc caccgcgtcg cgccccgagt ccgcgcactg ggtgcggcgg ctgggcgccg
     1141 agcacgtcgc ggaccacagc cgcccgatcg atgcggcaat cgaggcgatc ggctttggcg
     1201 gtgtcgacta tctcgcggcg atcaccacca cgccgggcag tgcgcccgcc ctcgcgcggg
     1261 cgatgaaccc ccagggccac atcaatttca tcgacaattt cgacgagagc atcgccctgt
     1321 tcaagccgaa gagcctgacg atctcctggg agatgatgtt cacgcgatcg ctgttcgaaa
     1381 cgccggacat ggccgcgcag caccgcctgc tgaaggaggt cgccgccctg gtcgacgaag
     1441 gcgtgctgaa gaccacgctg acccacgtca gcggcccgat caacgccgag gccctgcgcg
     1501 ccgcgcacct cctggtcgag agcggacaca ccctcggcaa ggtcgtcctg gaagctgctt
     1561 agcctcgacc cagcggctca tttcgcggcg cgaagcctcg acatgttcgc ggatcagaat
     1621 agaaatcatg ccacctgatc gttgcggaaa ttggcatgtc gaaactgccg gatttcgagg
     1681 gcctggcgat cttcgccaag gtacttcaga tgcagtcctt cgccagggcg gccgcggacc
     1741 tgcagctgtc caaggcgacc gtctccaagg cagtcagccg cctggaagcc aaggtcggga
     1801 cccgcctgtt caaccgcacg tcgcggcggc tgtcgctgac cgaagcgggc aagcagctgg
     1861 ccgagcgggc cgcccacatc ctggcggagg gggaagtcgc cgaggccgaa ggcatcgcca
     1921 acgccgcggc gccgcggggg cacatt
//
LOCUS       DATAJL010000521         1583 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59010,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000521 DATAJL010000000
VERSION     DATAJL010000521.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1583)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1583)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1583
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59010"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1583)
                     /locus_tag="VHN39_10030"
     CDS             complement(<1..>1583)
                     /locus_tag="VHN39_10030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEX2816725.1"
                     /translation="LTYAGPKKLTRLPRRSAVVAFSADQVYAIAELIRRQRGGAAVVM
                     GSLSPRTRNAQVALYQSGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRTRFLYP
                     QEVGQIAGRAGRYQRDGTFGVTGEAEEMDEDLVRAVEEHHFEPVTGAEWRNSKLDFGS
                     LPALLKSLSKTPDRAGLELSAEALDEITLRGLVQDPAITDRAKGRAAIERLWECCQTP
                     DFRKLAIDEHMGLAREFFLHLTTGRQRIPEDWIARQFSHLDRTDGEIDTLAARLSSVR
                     TLAYVANRPDWLADPAGWQGKMRGLEDRLSDTLHEKLMARFVDRRTSALMRGLRVRED
                     MLAGVATDGAVTVEGHYVGRLTGVQFEAAQGSSVLEEKALRAAATHAVGPEIARRLGK
                     LAAEGDEAFALTPDGVVLWQGEAAGVLAGGEPFKPRVRLLGEIGHDAARQRAGQRLEA
                     FVASEAGRRLGALRKLEAAVADGKIKGLARGLAFRLIEAGGVLDRAAVRAEARALSQV
                     ERRMLRGLGVRLGAFSVYMP"
BASE COUNT          218 a          589 c          556 g          220 t
ORIGIN      
        1 ggcatgtaga cggaaaaggc gcccagccgc acgcccaggc cccgcagcat ccgccgctcc
       61 acctggctga gcgcgcgggc ctcggcccgc acggcggcgc ggtccagtac cccgccggct
      121 tcgatcagcc ggaaagccag gccccgggcc aggcccttga tcttgccgtc ggcgacagcc
      181 gcctccagct tgcgtagcgc gcccagccgt cggcccgcct cgctggccac gaaggcctcc
      241 agccgctggc cggcccgctg ccgcgccgcg tcatggccga tctcgcccag caggcgcacg
      301 cggggcttaa acggctcgcc tccggccagg acgcccgccg cctcgccctg ccacagcacc
      361 accccgtcgg gggtcagcgc gaaggcctcg tcgccttccg ccgccagctt gcccagccgc
      421 cgcgcgatct ccggtcccac ggcatgggtg gccgcggccc ggagcgcctt ttcctccagc
      481 accgaggagc cctgagccgc ctcgaactga accccggtca gccgacccac atagtggccc
      541 tcgacggtca cggcgccatc cgtcgccacc ccggccagca tgtcctcgcg gaccctgagg
      601 ccccgcatca gcgcactggt ccgccggtcg acgaaccggg ccatcagctt ctcgtgcagg
      661 gtgtcggaga ggcggtcttc gagcccccgc atcttgccct gccagcccgc cggatcggcc
      721 agccagtcgg ggcggttggc cacataggcg agcgtgcgga cgctggagag ccgggcggcc
      781 agggtgtcga tctccccgtc ggtgcggtcg aggtgactga actgcctggc gatccagtcc
      841 tcggggatcc gctggcggcc ggtggtcagg tgcaggaaga actcccgggc cagacccatg
      901 tgctcgtcga tggcgagctt gcggaaatcc ggggtctggc agcattccca cagccgctcg
      961 atggccgcgc ggcccttggc gcggtcggtg atggcggggt cctggacgag gccgcgcagg
     1021 gtgatctcgt ccagcgcctc ggccgagagt tccaggccgg cgcggtcggg cgtcttggaa
     1081 agcgacttga gcagggccgg cagggacccg aagtcgagct tggaattgcg ccactccgcg
     1141 ccggtcaccg gctcgaaatg atgctcttcg acggcgcgga ccaggtcctc gtccatctcc
     1201 tcggcctcgc cggtgacccc gaaggtcccg tcgcgctgat agcgcccggc gcggccggcg
     1261 atctggccca cctcctgcgg gtagaggaag cgggtccgct tgccgtcgaa cttgcgcagg
     1321 cccgcaaagg ccacatggtc gacgtccatg ttcaggccca tgccgatggc gtcggtggcc
     1381 accaggaaat ccacctcgcc ggactggtag agggccacct gggcgttgcg ggtgcggggg
     1441 ctcaaggagc ccatgaccac ggcggcgccg ccgcgctggc ggcggatcag ctcggcgatg
     1501 gcgtagacct ggtcggcgct gaaggccacg accgccgagc ggcggggcag gcgggtgagc
     1561 ttcttcggcc cggcgtaggt caa
//
LOCUS       DATAJL010000522         4070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21830,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000522 DATAJL010000000
VERSION     DATAJL010000522.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4070
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21830"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1456
                     /locus_tag="VHN39_10035"
     CDS             <1..1456
                     /locus_tag="VHN39_10035"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEX2816726.1"
                     /translation="PQVAAHAGDTWMFAGQAWRLMDLACVLLFIGAMGKSAQFFLHTW
                     LPDAMEGPTPVSALIHAATMVTAGVYMVCLLSPMFEFAPFAKHVVIIIGALTALFAAT
                     VGLVQNDIKRVIAYSTCSQLGYMFMAAGVGAYQASMFHLFTHAFFKALLFLGAGSVIN
                     AMAHEQDMRRYGNLAKYLPVTCAVMVIGTISITGLGIPGVEWGFAGFYSKDSIIHAAY
                     AAGSAGDPLGYFAFVIGVFVAGLTAFYSWRVAFFTFNGHARWTSEDLEHHWHNRDHDH
                     ADDHTSHAETHSEPDHGETHHLPHESPWTMRLPLILLAVGAIAAGFVFVEKFIGADQH
                     EFWRGAIFTAASNHVLAEGSPPAWTVWAPLVAAIAGLAVAAYMYLMREGSGARLAANR
                     GPVYLFFYNKWFFDELYEAVFVKGAQWLGDLFWKGGDQKLIDGLGPDGVSAVSLEVGK
                     GAGRLQTGFLYHYAFVMLLGVAAILTFALWAWSA"
     gene            1471..2955
                     /locus_tag="VHN39_10040"
     CDS             1471..2955
                     /locus_tag="VHN39_10040"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEX2816727.1"
                     /translation="MPILSLITFAPILGVAGILALRLFGKADDPKTVESAKWIALVTT
                     LATLALSILLVVRFNPADNGFQFLEETPWFAGLYYRMGVDGISVLFVLLTAFLMPICI
                     AASWKAIEKRVLEYMIAFLILESLVIGVFCALDIVVFYIFFEFGLVPMFLIIGIWGGA
                     RRVYAAFKFFLYTLLGSVLMLAAILAMIGISHTSSIPELMVYHFDPKVQTWLFLAFFA
                     SFAVKMPMWPVHTWLPDAHVEAPTAGSVILAGILLKMGGYGFLRFSLPMFPAASHYFT
                     PLVFALSVIAVVYTSLVAFRQTDMKKLIAYSSVAHMGFVTMGIFSGNAVGEQGAIFQM
                     LSHGVISGALFLAVGVVYDRMHTREIAFYGGLVTRMPIYAATFMLFTMGNVGLPGTSG
                     FVGEILTMTGVYGVSTWTAIVAATGVIFSAVYALSLYRRVVFGTITNPQLAGITDMDW
                     REVAIFAPLIASTLVLGVQPGLVMNLTQASVDHLVSAYQAAIGG"
     gene            2963..>4070
                     /locus_tag="VHN39_10045"
     CDS             2963..>4070
                     /locus_tag="VHN39_10045"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEX2816728.1"
                     /translation="MTFSADLGLAYPELILAIGALVLLVFGAFAPKAARLVGWGGVLV
                     LAAAAVQAATGPFGRGFSGGIIADDASAFAQVAIFTASAICIPLGQRWFERRGVHNFE
                     FPVLIVLAALGMGMMVAAGDLISLYIGVELHSLALYVLAAMHRDNAKASEAGLKYFVL
                     GALSSGLLLYGASLVYGFAGSTLFTDIAAAVHNGAHTGVLFGLVFLICGLGFKVSAAP
                     FHMWTPDVYEGAPTPVVAFFAAAPKLAAMVLFARLLAQGFGGAIVQWQQVLVALGLIS
                     VAVGAFAGLNQKNLKRLWAYSSIANVGYAIIGLSAGTAEGVQSMLTFMVLYMIDVTGF
                     FACLAALSRQGKDMETIEDMAGLFKEQPGIALAMT"
BASE COUNT          548 a         1410 c         1278 g          834 t
ORIGIN      
        1 cccgcaggtc gcggcgcacg ctggcgacac ctggatgttc gcgggccagg cctggcggct
       61 gatggatctc gcctgcgtgc tgctgttcat cggcgccatg ggcaagtcgg cgcaattctt
      121 cctgcacacc tggctgcccg acgccatgga gggcccgacg ccggtgtccg ccctgatcca
      181 cgccgcgacc atggtgacgg ccggcgtcta catggtctgc ctgctctcgc cgatgttcga
      241 attcgcgccc ttcgccaagc acgtggtgat catcatcggg gcgctgacgg cgctgttcgc
      301 ggcgacggtc ggtctggtgc agaacgacat caagcgggtg atcgcctatt cgacctgctc
      361 gcagctcggc tacatgttca tggccgcggg tgtcggcgcc tatcaggcgt ccatgttcca
      421 cctcttcacc cacgccttct tcaaggcgct gctgttcctg ggcgccggct cggtgatcaa
      481 cgccatggcc cacgagcagg acatgcgccg ctacggcaat ctggcgaagt atctgccggt
      541 gacctgcgcg gtcatggtga tcggcaccat ctccatcacc ggcctgggca ttcccggcgt
      601 cgagtggggc ttcgccggct tctattccaa ggactcgatc atccacgcgg cctatgccgc
      661 aggctcggcc ggcgatcccc tgggctattt cgccttcgtg atcggggtgt tcgtggccgg
      721 tctgaccgcc ttctattcct ggcgcgtcgc cttcttcacc ttcaacggcc acgcccgctg
      781 gacctcggag gacctggaac accactggca caaccgcgac cacgaccacg cggacgacca
      841 taccagccac gccgagaccc attccgagcc tgaccacggc gagacccacc acctgccgca
      901 cgagagcccg tggaccatgc gccttccgct gatcctgctg gccgtcggcg cgatcgcggc
      961 gggtttcgtt ttcgtcgaga aattcatcgg cgccgatcag cacgagttct ggcgcggcgc
     1021 gatcttcacc gcggcctcga accacgtcct ggccgaggga tcgccgccgg cctggacggt
     1081 ctgggcgccg ctggtcgcgg ccatcgcagg cctggccgtc gcggcctaca tgtacctgat
     1141 gcgcgagggg tcgggcgcgc gtctcgccgc caaccgcggg ccggtctacc tgttcttcta
     1201 caacaagtgg ttctttgacg agctctatga ggcggtcttc gtgaagggcg cccagtggct
     1261 cggcgacctc ttctggaagg gcggcgatca gaagctgatc gacgggctcg gacccgatgg
     1321 cgtctcggcc gtctcgctgg aagtgggcaa gggcgcaggg cgcctgcaga ccggcttcct
     1381 ctaccactac gccttcgtga tgctgctggg cgtcgcggcg atcctcacct tcgccctctg
     1441 ggcctggtcc gcttaaggga gagacgcgcc atgcccatcc tctccctcat caccttcgcc
     1501 ccgatcctcg gcgtcgccgg catcctggcg ctgcgcctgt tcggcaaggc cgacgacccg
     1561 aagaccgtcg agtccgccaa atggatcgcg ctggtcacca ccctggcgac gctcgcgctc
     1621 tcgatcctgc tggtcgtgcg gttcaacccc gccgacaacg gcttccagtt ccttgaggag
     1681 accccctggt tcgcgggcct ctactaccgc atgggcgtgg atgggatttc cgtcctgttc
     1741 gtgcttttga ccgcgttcct gatgccgatc tgtatcgcgg cgtcctggaa ggcgatcgag
     1801 aagcgcgtcc tcgaatacat gatcgccttc ctgatcctgg aaagcctggt gatcggggtc
     1861 ttctgcgcgc tggatatcgt ggtcttctac atcttcttcg agttcggcct ggtgccgatg
     1921 ttcctgatca tcggcatctg gggcggggcg aggcgcgtct acgcggcctt caagttcttc
     1981 ctctacaccc tgttgggctc agtcctgatg ctggccgcga tcctggcgat gatcgggatc
     2041 agccacacga gctcgatccc cgagctgatg gtctaccatt tcgaccccaa ggttcagacc
     2101 tggctgttcc tggccttctt cgcctccttc gccgtgaaga tgcccatgtg gccggtccac
     2161 acctggctgc ccgacgccca cgtcgaggcg ccgactgcgg gctcggtgat cctggctggc
     2221 atcctcttga agatgggcgg atacggcttc ctgcgcttca gcctgccgat gttcccggcc
     2281 gcctcgcact atttcacccc gctggtcttc gcgctcagcg tgatcgccgt cgtctacacc
     2341 tcgctggtgg ccttccggca gaccgacatg aagaagctga tcgcctattc gtcggtggcc
     2401 cacatgggct tcgtgaccat gggcatcttc tccggcaatg cggtgggcga acagggcgcg
     2461 atcttccaga tgctaagcca cggggtgatc tccggcgcgc tcttcctggc cgtgggcgtg
     2521 gtctacgacc gcatgcacac ccgcgagatc gccttctacg gcggcctggt gacccgcatg
     2581 cccatctatg cggcgacctt catgctcttc accatgggca atgttggcct gccggggacc
     2641 tcgggcttcg tgggcgagat actgaccatg accggggtct acggcgtctc cacctggacg
     2701 gcgatcgtgg cggcgaccgg ggtaatcttc tcggcggtct atgcgcttag cctctatcgc
     2761 cgggtggtgt tcgggacgat caccaatccc cagttggcgg gcattaccga catggactgg
     2821 cgcgaggtgg cgattttcgc cccgctgatt gcgtccaccc tcgtgctggg cgttcagccc
     2881 ggtctcgtca tgaacctgac ccaggcctcc gtggaccatc tggtctcggc ctatcaagcg
     2941 gccatcgggg gctaagccgg caatgacctt ctctgccgat ctcggcctgg cctatcccga
     3001 actgatcctg gcgatcggcg ccttggtgct gctcgtcttc ggggccttcg cgcccaaggc
     3061 cgcgcggctc gtgggctggg gcggggtgct ggtgctggcc gccgccgctg tccaggccgc
     3121 caccggtccg ttcggcaggg gcttttccgg cggcatcatc gccgacgacg cctcggcctt
     3181 cgcgcaggtg gcgatcttca cggccagcgc catctgcatc ccgctcggcc agcgctggtt
     3241 cgaacggcgc ggggtccaca actttgagtt cccggtgctg atcgtgctgg ccgcgctggg
     3301 catggggatg atggtcgccg ccggcgacct gatctcgctc tacatcggcg tcgagctgca
     3361 ttcgctcgcg ctttacgtcc tggccgccat gcaccgcgac aacgccaagg cctcggaagc
     3421 cggcctgaag tacttcgtcc tgggcgcgct ctcctcgggc ctgttgctct atggcgcgag
     3481 cctggtctat ggcttcgccg gctcgaccct cttcaccgac atcgccgcgg ccgtgcacaa
     3541 cggggcccac accggcgtgc tcttcggtct ggtcttcctg atctgcggcc tgggcttcaa
     3601 ggtctccgcc gcgcccttcc acatgtggac gccggatgtc tacgagggcg cgccgacccc
     3661 ggtcgtggcc ttcttcgccg cggcccccaa gctggcggcc atggtcctgt tcgcccgcct
     3721 gctggcccag ggcttcggcg gggccatcgt ccagtggcag caggtgctgg tggcgctggg
     3781 cctgatctcg gtggcggtcg gcgctttcgc gggcctcaac cagaagaacc tcaagcgcct
     3841 gtgggcctat tcctccatcg ccaacgtcgg ctacgcgatc atcggcctat cggccggcac
     3901 cgcggagggc gtgcagtcga tgctgacctt catggtcctc tacatgatcg acgtgaccgg
     3961 cttcttcgcc tgcctggcgg cgctctcgcg ccagggcaag gatatggaga ccatcgaaga
     4021 catggcgggt ctcttcaagg agcaacccgg catcgcgctg gccatgaccg
//
LOCUS       DATAJL010000523         1986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94055,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000523 DATAJL010000000
VERSION     DATAJL010000523.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94055"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1417)
                     /locus_tag="VHN39_10050"
     CDS             complement(<1..1417)
                     /locus_tag="VHN39_10050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase family protein"
                     /protein_id="HEX2816729.1"
                     /translation="MTLAKRLLPFGFAALLAASAAVPTVIQSAPAAPAKGPTVMVAAA
                     EPDAVDAGLKVLRAGGSAVDAAVAIQAVLGLEEPQSSGLGGGSFMTYYDAKTHQVTAY
                     NGRETAPAAATPQLFYGPDGKPLPKGQAIITGRSAGVPGAIAMLYLAQSQHGKLAWKD
                     LFGDAEHLAADGFSVPRRMAAAAASNAPQAKQPDAIAYFTKPDGTKVQPGDIMKNAAY
                     AATVRKIAAEGPKALLEGPIAEAIVARLHQGALPGSMTLQDLASYKPKATPAVCRPYR
                     VYVVCVPPAPSGGPAVLEGLGVLQRTDIPAHRNDAQGWYLFSQASRLMYADRDRYYGD
                     PDFVDVPMAGLLAADYLDSRAKLINPVTAGPPPAPGKPKGAGLRAPDRTKEPGGTTNL
                     VVVDKDGNAVSMTTTVESIFGDGRMVGGFFLNNQLTDFSFEPKDSDGAPAANAVAGGK
                     RPRSSMAPAIVLDKQGRLVEAV"
     gene            1514..>1986
                     /locus_tag="VHN39_10055"
     CDS             1514..>1986
                     /locus_tag="VHN39_10055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P1 family peptidase"
                     /protein_id="HEX2816730.1"
                     /translation="METEPSHARPGARNLITDIPGLKVGQAQDLGVRSGVTVILPDDR
                     AVCACDVRGGAPGTRETDALAPENLVEAVDAVVLSGGSVYGLAAADGVAAWLGARGRG
                     YGMSADPGVPVSPVVPAAILFDLANGGDKAWGEAPPYRALGMSAVASAAETFDLGT"
BASE COUNT          251 a          650 c          792 g          293 t
ORIGIN      
        1 ccacggcctc caccagccga ccctgtttgt cgagcacgat ggccggggcc atggaggagc
       61 ggggccgctt gccgccggcc accgcattgg cggcgggcgc gccgtcgctg tccttgggct
      121 cgaaggagaa gtcggtgagc tggttgttga ggaagaaacc tccgaccatg cggccgtcgc
      181 cgaagatgct ctcgacggtg gtggtcatcg agaccgcgtt gccgtccttg tcgacgacga
      241 cgaggttggt ggtgccgccg ggctccttgg tgcggtccgg cgcgcggagg ccggcgccct
      301 tgggcttgcc gggcgcaggc ggcgggccgg ccgtgaccgg attgatcagc ttggcgcggc
      361 tgtcgaggta gtcggcggcc agcaggcccg ccatcggcac gtccacgaag tccgggtcgc
      421 cgtagtagcg gtcgcggtcg gcgtacatca gccggctcgc ctgggaaaac aggtaccagc
      481 cctgggcgtc gttcctgtgg gcgggaatgt cggtgcgctg caggacgccc aggccttcca
      541 gcaccgcggg accgccggag ggcgcgggcg gcacgcagac cacatagacg cggtagggcc
      601 ggcagacggc cggcgtcgcc ttgggcttgt agctggccag gtcctgcagg gtcatggatc
      661 cgggcagggc gccctggtgc agccgcgcga cgatggcctc ggcgatcggg ccttccagga
      721 gggccttggg gccttcggcg gcgatcttgc ggacggtcgc ggcgtaggcg gcgttcttca
      781 tgatgtcgcc gggctggacc ttggtcccgt cgggcttggt gaaataggcg atggcgtcgg
      841 gctgcttggc ctggggcgcg ttggaggccg ccgccgccgc catccggcgg ggcacggaaa
      901 agccgtcggc ggccaggtgc tcggcgtctc cgaacaggtc cttccaggcg agcttcccgt
      961 gctggctctg ggccaggtag agcatggcga tggcgcccgg gacgccggcc gagcggccgg
     1021 tgatgatcgc ctggcccttg ggcagcggct tgccgtcggg gccgtagaac agctgcggcg
     1081 tcgccgcggc cggcgcggtc tcgcggccgt tgtaggcggt cacctggtgg gtcttggcgt
     1141 cgtagtaggt catgaacgac ccgccgccga gcccggagct ctgcggctcc tccaggccca
     1201 gcaccgcctg gatggcgacc gcggcgtcca ccgccgagcc gcccgcgcgc agcaccttga
     1261 ggccggcgtc gaccgcgtcg ggctcggcgg cggccaccat cacggtcgga ccttttgccg
     1321 gcgccgcagg tgcgctttgg atgacggtgg gaacggcggc ggaggcggcc agcagggcgg
     1381 cgaaaccgaa gggcagaaga cgcttggcga gggtcacgtg gcgggaagct ccaggcgggc
     1441 ggacggtgga gcgcgaccat agcggcgggc gcgcgtggac aacaaacctc aagccgtgcg
     1501 aggtcgctgg cccatggaaa cagagccttc gcacgcgcgc cccggcgccc gcaacctgat
     1561 caccgatatc ccaggcctga aggtgggcca ggcccaggat ctgggcgtcc gcagcggcgt
     1621 cacggtgatc ctgcctgacg accgggcggt ctgcgcctgc gatgtgcgcg gtggcgcgcc
     1681 gggcacgcgg gagaccgatg ccctggcgcc ggagaacctg gtggaggcgg tcgacgcggt
     1741 ggtgctgtct ggaggctcgg tctatggcct ggccgccgct gacggcgtcg ccgcctggct
     1801 gggcgcgcgg ggccgcggct atgggatgtc ggcggacccg ggcgtacccg tctcgccggt
     1861 ggttccggcg gcgatcctgt tcgacctggc caatggcggc gacaaggcct ggggcgaagc
     1921 cccgccctat cgcgcgctgg gcatgagcgc ggtggcctcc gccgccgaga ccttcgacct
     1981 ggggac
//
LOCUS       DATAJL010000524         2008 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21843,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000524 DATAJL010000000
VERSION     DATAJL010000524.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21843"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..847
                     /locus_tag="VHN39_10060"
     CDS             <1..847
                     /locus_tag="VHN39_10060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2816731.1"
                     /translation="SDAVRRARAGLQDPNRPIGSFLFLGPTGVGKTELTKALAEFMFA
                     DEHAITRLDMSEYMEKHSVSRMIGAPPGYVGYDEGGALTEAVRRRPYQVLLFDEVEKA
                     HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSNMGSEFLATLAEGEDVETARPS
                     VMSVVRSHFRPEFLNRIDEIILFKRLGRGAMDDIVRIQLKLFEKLLADRRMSIALDAA
                     AMHWMAERGYDPVYGARPLKRVIQKELVDPIARKLLAGDLEDGAVIDVTANQDGLVIG
                     RAKVH"
     gene            complement(887..1426)
                     /locus_tag="VHN39_10065"
     CDS             complement(887..1426)
                     /locus_tag="VHN39_10065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816732.1"
                     /translation="MADHARLLAAAALLSALSACAPSLGPPPPGRVAAMPADDGVFRA
                     GDFAWSQAPGRNTLAGALGHAGPVRYSCAGATVVLTPETPWATRRMSVLYRSSVRAAL
                     PADDVRSRQSQAPAGDSNPYVKRATCDAADHFNFLGLPDGAWYVVTIAKPAAGATGPT
                     LAVMRRVTTRGGKITTFEL"
     gene            complement(1490..>2008)
                     /locus_tag="VHN39_10070"
     CDS             complement(1490..>2008)
                     /locus_tag="VHN39_10070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEX2816733.1"
                     /translation="GSPLAHADAVARGEPDKPAINLNIVGSKGAESRWKAGLKKAIDN
                     PDYYWSVLFEWGHRLAILLLPIVGLSLALVYRKRKEVFVYDHLLVAMNLLSFTFLTNA
                     AGLMLPFSWMGWWFGLVALWTPVNLFQTLRGAYGSSILGAILKTLIVWWITVFSFSVL
                     LTGLLILAVAEL"
BASE COUNT          349 a          675 c          696 g          288 t
ORIGIN      
        1 ctctgacgcc gtgcgccggg cccgcgccgg cctccaggac cccaaccgcc ctatcggctc
       61 gttcctgttc ctgggcccca cgggcgtggg caagaccgag ctcaccaagg cgctggccga
      121 attcatgttc gccgacgagc acgccatcac ccgcctcgac atgagcgagt acatggaaaa
      181 gcactcggtc agccggatga tcggcgcgcc gcccggctac gtcggctacg acgagggcgg
      241 ggccttgacc gaagccgtgc gccgccgacc ctaccaggtg ctgctgttcg acgaggtgga
      301 aaaggcccac ccggacgtct tcaacgtgct gctgcaggtg ctggacgacg ggcggctcac
      361 ggacggccag ggccgcaccg tcgacttccg caacaccctc atcgtcatga cctccaacat
      421 gggttcggag ttcctggcga ccctggcgga aggtgaggac gtggagaccg cgcggccttc
      481 ggtgatgagc gtggtccgca gccacttccg gccggaattc ctgaatcgga tcgacgagat
      541 catcctcttc aagcggctgg gccgcggcgc gatggatgac atcgtgcgca ttcagctcaa
      601 gctgttcgag aagctgctgg ctgaccggcg catgtccatc gcgctcgatg cggccgccat
      661 gcactggatg gccgagcgcg gctacgaccc ggtctatggc gcccggccgc tgaagcgggt
      721 gatccagaag gagctggtcg accccatcgc ccgcaagctg ctggccggcg acctggagga
      781 cggcgccgtg atcgacgtca ccgcgaacca ggacggcctg gtgatcggac gcgccaaggt
      841 ccactagcgg cggcgcctgc cgggaaaccg gttggcgagc ctgaccctag agctcgaagg
      901 tcgtgatctt gccgcccctg gtggtcaccc ggcgcatgac ggcgagcgtc ggcccggtcg
      961 cgccggccgc cggcttggcg atggtcacca cgtaccaggc gccgtccggc agacccagga
     1021 agttgaagtg gtcggcggcg tcacaggtgg cgcgcttcac gtaggggttg gagtcgccgg
     1081 cgggcgcctg gctctgccgg ctgcggacgt cgtcggcggg gagcgcggcg cggacgctgg
     1141 acctgtagag cacgctcatc cggcgcgtcg cccagggcgt ctcgggcgtc agcaccacgg
     1201 tcgcgcctgc gcagctgtag cggaccggtc cggcatggcc caaggcgccg gcgagggtgt
     1261 tcctgccagg cgcctgcgac caggcgaagt cgcccgcgcg gaagacacca tcatcggcgg
     1321 gcatcgccgc gacacggccg ggcggcggcg ggcccaggct cggtgcgcag gcggaaagcg
     1381 cactcaggag cgcggcggcg gcgaggagac gagcgtggtc agccatgtcg ccgagcttat
     1441 agggcaatga ggcgaaatcg cgccagaccg cgaaatcggc cggaataaat cagagctcgg
     1501 cgacggccag gatcagcagc ccggtcagca gcacgctgaa cgagaacacc gtgatccacc
     1561 agacaatcag ggtcttcaag atcgccccca ggatggacga gccataggcc ccgcgcaggg
     1621 tctggaagag attgaccggg gtccacagcg ccaccaggcc gaaccaccag cccatccagc
     1681 tgaacggcag catcagcccc gccgcgttgg tcaggaaggt gaacgacaac aggttcatcg
     1741 ccaccagcag gtggtcgtag acgaagacct ccttccgctt tcgatagacc agcgccaggc
     1801 tgaggccgac gatcggcagc agcaggatcg ccaaccggtg gccccattcg aacaggaccg
     1861 accagtagta gtcggggttg tcgatcgcct tcttgaggcc cgccttccat cggctctcgg
     1921 cgccctttga accgacgatg ttgaggttga tcgccggctt gtctggctcg cccctggcca
     1981 cggcgtctgc gtgagccagg ggcgagcc
//
LOCUS       DATAJL010000525         2462 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35079,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000525 DATAJL010000000
VERSION     DATAJL010000525.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35079"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..755
                     /locus_tag="VHN39_10075"
     CDS             <1..755
                     /locus_tag="VHN39_10075"
                     /inference="COORDINATES: protein motif:HMM:NF039847.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816734.1"
                     /translation="PGSLDWATWLGPANVDWGYHPDYAAFNWRGWTPFGSGALGDMGA
                     HLIDFPFWALDPGLPTKVETRHSRWAGNASLWDTKRPPVITSYPLASVTHYEFGGAKG
                     GPLTMIWYDGGMLPPTPPGFPANMSMSGDGGVLFVGAKGMLMHETYGEKPVLIGEGLD
                     EKAAKIPHALPRIQGGMNGHEMNWIRAIRGEEKISCPFEYATRLNETMNLGVVALQAD
                     QAILYDGVAGRVTNVDSANQYLSRQYRKGWEL"
     gene            761..1567
                     /locus_tag="VHN39_10080"
     CDS             761..1567
                     /locus_tag="VHN39_10080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEX2816735.1"
                     /translation="MPRVQLAAASAALALLGAAGALAQAVPPPPGSTAKPQDTEQWTP
                     VPPVVTPGKTDGQAPSDAVVLFDGKGLDQWVAVKDKSPAAWDVKDGVLVVSKTHGNIE
                     TRKSFKNYQLHLEWRVPSDVTGSGQARGNSGVFLASTGPGDAGYELQILDSYKNETYV
                     NGQAASLYKQSPPLVNAMRPPGAWQTYDVIWTAPSFAPDGKVRSPAKVTAFHNGVLVQ
                     NDTVLTGETLYIGKPSYKAYDRAPIKLQAHGDPSPPLSFRNIWVRELPGQ"
     gene            1744..2022
                     /locus_tag="VHN39_10085"
     CDS             1744..2022
                     /locus_tag="VHN39_10085"
                     /inference="COORDINATES: protein motif:HMM:NF021390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HEX2816736.1"
                     /translation="MAQQTMQPPMNDFYEAFYNCEGGAFLVSYDSDMPERATVTTNLR
                     AKKYELKRAPTATGVKFSGEAARFWTDGKTVTLEGTETPLKNCKIKGR"
     gene            complement(2065..>2462)
                     /locus_tag="VHN39_10090"
     CDS             complement(2065..>2462)
                     /locus_tag="VHN39_10090"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006071 - glycerol metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="fructose-bisphosphatase class II"
                     /protein_id="HEX2816737.1"
                     /translation="VYLITDGDVAGVMNTADPSTGVDLYVGSGGAPEGVLACAALKCV
                     GGQFQGRLVFRNADEKARAARVGITDLDRKYDLHEMVRADAIFAATGVTNGALLDGVK
                     VEGGFVHTHTLVLNSATRTAREVRMKRPV"
BASE COUNT          440 a          816 c          851 g          355 t
ORIGIN      
        1 cgccagggag cctggactgg gcgacgtggc tgggcccggc caacgtcgac tggggctacc
       61 atcctgacta cgcggccttc aactggcggg gctggacgcc gttcggctcg ggcgcgctcg
      121 gcgacatggg cgcgcacctg atcgacttcc cgttctgggc gctggatccg ggcctgccaa
      181 ccaaggtcga gacccggcac tcgcgctggg ccggcaacgc gagcctttgg gacaccaagc
      241 gcccgccggt gatcaccagc tatccgctgg ccagcgtcac ccactacgag tttggcggcg
      301 cgaaaggcgg gccgctgact atgatctggt acgatggggg catgctgccg ccgacgccgc
      361 cgggcttccc ggccaacatg tcgatgagcg gcgacggcgg ggtgctgttc gtgggcgcca
      421 agggcatgct gatgcacgag acctatggcg agaagccggt gctgatcggc gaaggcctgg
      481 acgagaaagc cgcgaaaatc ccgcacgccc tgccccgtat ccagggcggc atgaatggcc
      541 acgagatgaa ctggatccgc gccatccgcg gcgaggagaa gatctcctgc cccttcgaat
      601 atgccacgcg gctgaacgag accatgaacc tgggcgtcgt cgccctgcag gccgaccagg
      661 cgatcctcta cgacggggtc gccggccggg tgaccaacgt cgacagcgcc aaccagtacc
      721 tcagccgcca gtaccgcaag ggatgggagc tgtgagaccg atgccacgcg tccaactggc
      781 ggcggccagc gccgccctgg ccctgttggg ggccgcgggc gcgctggccc aggccgtacc
      841 gccgccgcct ggctccaccg ccaagccgca ggacaccgag cagtggacgc cggtccctcc
      901 tgtggtgacg ccgggcaaga cggacggcca ggcgccgtcg gacgcggttg tcttgttcga
      961 cggcaagggc ctggatcagt gggtcgccgt gaaagacaag tcgccggcgg cctgggacgt
     1021 gaaggacggg gtgctggtgg tcagcaagac ccacggcaac atcgagaccc ggaagagctt
     1081 caagaactac cagctgcatc tggaatggcg ggtgccgagc gatgtcaccg ggtcgggcca
     1141 ggcgcggggc aactccggcg tcttcctggc ctccaccggg ccgggcgacg cgggctacga
     1201 gctgcagatc ctcgacagct acaagaacga gacctatgtg aacggccagg cggccagcct
     1261 ctacaagcag agcccgccgc tggtgaacgc catgcgcccg cccggcgcgt ggcagaccta
     1321 tgacgtcatc tggacggcgc cgagcttcgc gccggacggc aaggtcaggt cgcccgccaa
     1381 ggtgaccgcc ttccacaacg gggtgctggt gcagaacgac acggtgctga ccggcgagac
     1441 gctctacatc ggcaagccct cctacaaggc ctacgaccgc gcgccgatca agctgcaggc
     1501 gcacggcgac ccgagcccgc cgctgagctt caggaacatc tgggtgcggg agcttccggg
     1561 ccagtgacgc gcgcacgtca gtgtcccctt agaatcgcga ccggtgttat atagtcggga
     1621 tcgactgcag agagacgcca gcatctagag ccaagaagcc gtcatctggg gaggaacctg
     1681 aggatgagtg ctttgtccgt gagcgccgct gtttttgcgg catgcgcgat tgcggcgccc
     1741 gcgatggccc agcagacgat gcagccgcca atgaacgatt tctatgaggc tttctacaac
     1801 tgcgaaggcg gcgccttcct ggtctcatac gactctgaca tgccggaacg cgccaccgtg
     1861 accaccaacc tcagggccaa gaaatacgag ctgaagcggg cgcccaccgc cacgggcgtg
     1921 aaattctctg gcgaggcggc caggttctgg accgacggca agacggtgac gctggaaggg
     1981 actgagactc ccttgaagaa ctgcaagata aaggggcgct gacgtccgga cgccgcgcgg
     2041 gcgcaggtcg ccagcggtcc cggtctagac cggccgcttc atccgcactt cgcgggccgt
     2101 tcgggtcgcc gagttgagca ccagcgtgtg ggtgtggacg aagccgccct cgaccttcac
     2161 cccgtccagc agcgcgccgt tggtgacgcc ggtagccgcg aaaatcgcgt cggcgcggac
     2221 catctcgtgc aggtcgtatt tccggtcgag gtcggtgatg ccgacgcggg cggcgcgggc
     2281 cttctcgtcg gcgttgcgga agaccaggcg gccctggaac tggccgccga cacacttcag
     2341 cgccgcgcag gccagcacgc cctcgggcgc cccgccggag cccacataga ggtcgacgcc
     2401 ggtcgagggg tcggcggtgt tcatgacgcc ggccacatcg ccgtcggtga tcagatagac
     2461 cc
//
LOCUS       DATAJL010000526         2213 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47823,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000526 DATAJL010000000
VERSION     DATAJL010000526.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47823"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..520
                     /locus_tag="VHN39_10095"
     CDS             <1..520
                     /locus_tag="VHN39_10095"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEX2816738.1"
                     /translation="TLPSRPQPYQPSGQRPYIPPSAVTPDTTPAPTDAQVSQAGKGRF
                     LWPVRGAILSDFGPIPGGQRNDGINIQAEAGAIVRSAADGEVIYAGDQVLGFGNLVLV
                     KHADGWVTAYAYLSHIEVKNKQTVTQGQQVGQVGNTGGVPEPQLHFEVRYAPNPQDPH
                     ARPVDPKLVLPK"
     gene            complement(521..1393)
                     /locus_tag="VHN39_10100"
     CDS             complement(521..1393)
                     /locus_tag="VHN39_10100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816739.1"
                     /translation="MTHELEPVLARIADALERLAPPRAVEPAFATARLFRHDPASGAF
                     HPAPDYPLPLEVLVGIDRQKERFVENLSRFAGGAPSNHALLWGVRGTGKSSLAKAAFM
                     EVAKSTPDLKLVEVDRDQVTALPGLFDVLRARPERFLVLCDDLSFEEGAAAAKALKSA
                     LEGGVSGPPANVLFTATSNRRHLMPRSHGERGGHGEDRGLIATAEDAEEEVSVSDRFG
                     LWIGFPPMDQPTYLAAVQGYAKRYKLGTPDLKNGDLDRRALQWAQLRGARSGRVAWQF
                     IRDLAGELGRELPL"
     gene            1586..1873
                     /gene="yajC"
                     /locus_tag="VHN39_10105"
     CDS             1586..1873
                     /gene="yajC"
                     /locus_tag="VHN39_10105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018079910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEX2816740.1"
                     /translation="MLIQFLPLVGLVILFYFLMIRPQQRRMKTHQTMLGNLKRGDTVV
                     LSSGVHGKIVRVEDATVGVEIATGVTVKVRKSMIAEVETRGAPAPANDSKT"
     gene            1889..>2213
                     /locus_tag="VHN39_10110"
     CDS             1889..>2213
                     /locus_tag="VHN39_10110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEX2816741.1"
                     /translation="MMNLARWKVIVVVLATVFGLLFTLPNLLPAKMRDSLPGFMPRNT
                     LHLGLDLQGGSDLLYSVDIVALRNERLTNMAEDVRTAFRDKQIAFTDLAVTNGEIGLR
                     ITDPTQ"
BASE COUNT          362 a          775 c          723 g          353 t
ORIGIN      
        1 caccctgccg tcgcggccac agccctacca gccgtccggc cagcggccct acattccgcc
       61 gtccgcggtg acaccggaca cgacgccggc tccgaccgac gcccaggtct cgcaggcggg
      121 caagggccgg ttcctttggc cggtgcgcgg cgccatccta tctgacttcg gccccatccc
      181 gggcggccag cgcaacgacg ggatcaatat ccaggccgag gccggcgcca tcgtgcgctc
      241 cgccgccgac ggcgaggtga tctacgccgg cgaccaggtg ttgggctttg gcaatctggt
      301 gctggtcaag catgccgacg gctgggtcac ggcctatgcc tacctctcgc acatcgaggt
      361 gaagaacaag cagacggtca cccagggcca gcaggtcggc caggtcggca ataccggcgg
      421 cgtgccggag ccgcagctgc acttcgaggt tcgctacgcg cccaatcccc aggatccgca
      481 cgcgcggccg gtggatccga agctggtgct gcccaaatag ctagagcggc aattcccggc
      541 ccaattctcc cgccaggtcg cggatgaact gccaggcgac gcggccggag cgcgcgcctc
      601 gcagctgcgc ccattgcagg gcccggcggt cgaggtcgcc attcttgaga tcaggggtcc
      661 ccagtttgta gcgtttggcg tagccctgga cggcggccag ataggttggc tggtccatgg
      721 gcgggaagcc gatccacagg ccgaaccggt cggacacgct aacctcttcc tcggcgtcct
      781 cggcggtggc gatcaggccg cggtcctcgc cgtggccgcc tctttcacca tgagatctgg
      841 gcatcaggtg ccggcggttc gaggtggcgg tgaacagcac attggccggc gggccggaga
      901 cgccgccctc cagcgccgac ttcaacgcct tggcggccgc cgcgccttcc tcgaaggaca
      961 gatcgtcgca gagcaccagg aaccgctcgg gacgggcgcg cagcacgtcg aacagtcctg
     1021 gcagcgccgt gacctgatcg cggtcgacct ccaccagctt caggtcgggc gtggatttgg
     1081 cgacctccat gaaagcggcc ttggcgagcg agctcttgcc tgtgccgcgc acgccccaga
     1141 ggagggcatg gttggacggc gcgccgcccg cgaagcggct caggttctcg acgaaacgct
     1201 ctttttgccg atcgatcccg accaggacct ccagcggcag agggtagtcc ggcgccgggt
     1261 ggaaggcgcc tgaggccggg tcgtggcgga acagacgcgc tgtcgcgaac gccggttcga
     1321 cggcgcgcgg cggcgccagg cgctccaggg cgtcggcgat ccgcgccagc acaggttcca
     1381 gctcgtgtgt catccttgcg acgcttaacc cggcgtccag cgccgttcca ttgcaaaaca
     1441 gggtcgcaac gcatagcttc cgccgacttc gagccggggc ctccagaagg ccctggccgt
     1501 actgctttcc ggagaggcca tgttcgccac cccagcctat gctcaagccc tcggcggcgc
     1561 cgtcggcggc ggcggtccca cggacatgct gatccagttc ctgccactcg tcggcctggt
     1621 catcttgttc tatttcctca tgatccgccc gcagcagcgg cggatgaaga cccaccagac
     1681 catgctggga aacctgaagc ggggcgatac ggtcgtcctg tcctccggcg tccatggcaa
     1741 gatcgtccgc gtcgaggacg ccacggtcgg cgtcgagatc gccaccgggg tcacggtcaa
     1801 ggtgcgcaag tcgatgatcg ccgaggtcga aacccgtggc gcgccggctc cggccaacga
     1861 ctcaaagacc tagggccgtc ctccagccat gatgaatctt gcccgctgga aggtgattgt
     1921 cgtcgtcctg gcgacagtgt tcggcctctt gttcaccctg ccgaacctgt tgcccgcgaa
     1981 gatgcgcgac agcctgcccg gcttcatgcc caggaacacc ctgcacctgg gcctcgacct
     2041 gcagggcggc tcggacctgc tctactcggt cgatatcgtg gcgctgcgca acgagcggct
     2101 gaccaacatg gccgaagacg tgcgcaccgc gttccgcgac aaacagatcg cgttcaccga
     2161 cctggccgtg accaacggcg aaatcggcct caggatcacc gatcccacgc agt
//
LOCUS       DATAJL010000527         2951 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21909,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000527 DATAJL010000000
VERSION     DATAJL010000527.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21909"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            145..354
                     /locus_tag="VHN39_10115"
     CDS             145..354
                     /locus_tag="VHN39_10115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816742.1"
                     /translation="MPARKGKIGPGLVLFHFCGTFIHDGFVAGRNLTVGQGVLIGCDN
                     QGLAAHVGIGGVPARLINTAAPRAA"
     gene            410..916
                     /locus_tag="VHN39_10120"
     CDS             410..916
                     /locus_tag="VHN39_10120"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2816743.1"
                     /translation="MGKLLAGVVIGVVLVLGAEYLFLTQGGMPVATKGGPLPLELLLT
                     SRALHNAIGKEAAKPSPLQPTEENLVAGARLYRAQCEVCHGSPSQKTPGAIALGMFPR
                     PPLLMAPSKGVTDDPVGETYWKVKNGIRLTGMPGFDGSLSDEDLWQLSLLLLKADQLP
                     EAAKAALR"
     gene            complement(955..>2951)
                     /locus_tag="VHN39_10125"
     CDS             complement(955..>2951)
                     /locus_tag="VHN39_10125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816744.1"
                     /translation="ADGSFNLTLEPAPAGGVRLVASGGSYASEANLSSVISGAALSAV
                     LPSVPAAGASGLVVTPLTTFADHNTMALLAATPATSLASAATTAEAAVRKIYGLQGGS
                     PLATLEPDFSAASGDAATASLVLGSLEQLAVLVGKAPAQVTNAIAQDISDGVLDGKAA
                     GGAAIKYASSDTAPAPSTLASAQFLNAVTSYADPANTKTQASKNGVVYSTEIVTALRG
                     AVVRSSSNSSGLDISSSGAITSLTFADATGATRQTVYFAARSVGLKALDFTSPSTPTA
                     IDLTALNTALRGGASPLLHSVDGAIAVPVGGANPQVLLYSFGSKTVALVDASTNTLIA
                     SKALTIPSAMSCSGASAFISGGVADTVGAEGLVWLTTGAGYLPVSVAGGVIAEQAAVG
                     AANGVAMSENVGASVVDRALFAPGYCDYSSAGKSATTPGLTLFDFDKKQAFSLDAADY
                     SGLAFGNFDDPDAGAVDTAFKVGIVVQEHSKQFSFIDLRGLTNPALYSFNTSLATVTP
                     QAPKTQLKTITLSDLPSVSGVNINSAAHLAFIIEETGDHLAVASIDDPANPASPAAGW
                     AGFTDYRFENGAGALTGSPTPFCAASDPHSEATISHFSNGRTYGFALNVCDKRSTLAV
                     KSGALIVDLENFVAGQAVTGSHQLKNNPYLDTTVIQTIAF"
BASE COUNT          490 a          944 c         1019 g          498 t
ORIGIN      
        1 tgattcaagg attcaatcgc gggcgccggg tctagatttc aagacccatc gacccggccc
       61 aggacgccgg cgcccgcgcg gtcgggatgg cagagcgccg gctgcgcgct ataggtttgc
      121 gcaaggaaat cgacgtgatc acccgtgccg gccaggaagg ggaagatcgg ccccggcctg
      181 gtattgtttc atttttgcgg caccttcatc cacgacggct tcgtggccgg acgcaatctc
      241 accgtgggcc agggcgtgct catcggctgc gacaaccagg gcctcgcggc ccacgtcggc
      301 atcggcgggg tgccggcaag gctcatcaat accgccgcgc cccgggccgc ctgagatgct
      361 gcgcggatga gcttgtgacg gggctcgctc gcgcgtaaga gcgtgaggca tgggaaagct
      421 gcttgctgga gtcgtcatcg gcgtcgtctt ggtgctcggc gcggagtatc tctttctcac
      481 ccagggcggc atgcctgtcg ctaccaaggg cgggccgctg ccgttggagc tgctcctcac
      541 ttctcgcgcg ctgcacaatg ccatcggaaa ggaagccgcg aagccatcgc cgctacagcc
      601 gacggaagag aacctcgtgg ccggcgcgag gctctatcgc gctcagtgcg aggtgtgtca
      661 cggctcgcca agccagaaga cgccgggcgc catcgccctg ggcatgtttc cgcggccgcc
      721 gctcttgatg gcgccgtcga aaggcgtcac ggatgatccc gttggcgaga cgtattggaa
      781 ggtgaagaac ggcatccgcc tcaccggcat gcccggcttc gacggctcgc tcagcgacga
      841 ggacctgtgg cagctgagcc tgctgctcct caaggccgat cagctgcccg aggcggcgaa
      901 ggccgcgctg cgctgaccaa gccgtcaggc gcagcttcgg gcagcctcgc cgcgtcagaa
      961 ggcgatcgtc tggatgacgg tcgtgtcgag gtacggattg ttcttgagct gatgcgagcc
     1021 agtgacggcc tgtccggcga cgaagttctc caggtccacg atcagggcgc cgctcttgac
     1081 cgccagagta ctgcgcttgt cgcagacgtt gagggcgaag ccgtaagtcc gcccgttgga
     1141 gaagtgcgag atggtcgcct cggagtgcgg atcgctcgcc gcgcagaacg gcgtggggct
     1201 acccgtcaga gctccggccc cgttctcgaa gcgatagtcg gtgaaacccg cccagcccgc
     1261 cgcgggcgac gctggattcg ccggatcgtc gatcgacgcc accgccaggt ggtcgcccgt
     1321 ctcctcgatg atgaaggcga gatgtgccgc gctgttgatg ttgacgccgc tgaccgatgg
     1381 caggtcgctc agggtgatgg tcttgagctg cgtcttgggc gcttggggcg tgaccgtcgc
     1441 gagcgaggta ttgaaactgt agagcgccgg attggtgagg ccgcgtaagt cgatgaagga
     1501 gaactgcttg ctgtgctcct gcaccacgat gcccaccttg aatgcggtat cgaccgcgcc
     1561 ggcatccgga tcatcgaagt ttccaaacgc gaggccgctg tagtcggctg cgtcgagaga
     1621 gaacgcctgc ttcttgtcga agtcgaagag cgtcaagccg ggggtggtgg ccgacttgcc
     1681 agcgctcgag tagtcgcagt agcccggcgc gaagagagcc cgatccacca cgctggcgcc
     1741 gacgttctcc gacattgcca cgccatttgc cgccccaacc gcggcttgct cggcaatgac
     1801 gccgccggcg accgacaccg gcaagtaacc tgctccagtg gtgagccaga ccagaccttc
     1861 ggctccgacg gtgtctgcca ctcctccaga gatgaaggcc gacgcgccgc tgcaactcat
     1921 cgcgctgggg atggtcagcg ccttgctcgc gatcaaggtg ttggtcgagg cgtccaccag
     1981 cgcgaccgtt ttcgagccga aagagtacag caacacctgc ggattggcgc cgccgacagg
     2041 caccgcgatc gccccgtcga cgctgtgtaa caagggcgag gcgccacccc ggagcgccgt
     2101 attcagcgcg gtgagatcga tggcggtggg cgtggacggg ctggtgaaat cgagcgcctt
     2161 gagcccgacg ctgcgcgccg cgaagtacac cgtctgccgc gttgcacccg tcgcatccgc
     2221 aaaggtcaag ctggtgatcg ctccggagga gctgatgtcc aggcctgagg aattcgacga
     2281 cgaacgcacg actgcaccgc gcagagcagt cacgatctcc gtcgaataca cgactccgtt
     2341 cttcgaggcc tgggtcttgg tgttggcggg gtcggcgtag gaggtcaccg cgttcaagaa
     2401 ctgtgcgctc gccaaggtgc tcggcgccgg ggcggtgtcg ctgctcgcgt atttgatggc
     2461 ggcgcccccc gcggctttgc cgtcgagcac gccgtcggag atgtcctggg cgatggcatt
     2521 ggtgacctgc gcgggcgcct tgcccaccag caccgcgagc tgttcgaggc ttccgaggac
     2581 gagcgacgcg gtagccgcat cgccgctcgc ggcgctgaaa tccggctcca acgtggccaa
     2641 tggcgatccg ccctgcaaac catagatctt cctgaccgct gcctcggccg tggtggccgc
     2701 cgaggcgagc gatgtggcgg gcgtcgcggc gagcaatgcc atcgtattgt ggtcggcgaa
     2761 ggtggtaagc ggcgtcacca ccagacccga ggcgcccgcc gccgggacgc tcggcagcac
     2821 cgccgagagc gcggcgccgc tgatgacgga ggacaggttg gcttcgctgg cgtagctgcc
     2881 gccgctcgcg accaggcgga cgccacccgc cggcgccggc tcgagcgtga gattgaaaga
     2941 gccatccgcg g
//
LOCUS       DATAJL010000528         1957 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9173,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000528 DATAJL010000000
VERSION     DATAJL010000528.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1957
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9173"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..122)
                     /locus_tag="VHN39_10130"
     CDS             complement(<1..122)
                     /locus_tag="VHN39_10130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX2816745.1"
                     /translation="MTRIAFIGLGNMGGGMAANQAKAGHDVHAFDLSATALEKAV"
     gene            complement(139..1278)
                     /locus_tag="VHN39_10135"
     CDS             complement(139..1278)
                     /locus_tag="VHN39_10135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isobutyryl-CoA dehydrogenase"
                     /protein_id="HEX2816746.1"
                     /translation="MDFNLTEDQRAIEDAARAFAAAELAPHSARWDAESHFPVDVLRK
                     AAELGFAGLYVQEDVGGSALSRLDASIVFEQLSYGDVSTAAFISIHNMASWMIDRFGS
                     DELRRRFLPKLTTMELIASYCLTEPGSGSDAAALATTAKQDGDHYVLNGSKAFISGAG
                     TSDIYVVMVRTGGAGPKGISAVVVEKDTPGLSFGAQEKKMGWKSQPTAQVNFDDCRVP
                     VENRIGAAGEGFRFAMAGLDGGRINIASCSLGGAGLALDTAKAHLETRKQFGNPLKDF
                     QGLQWRLADMATDLDAARLMVRRAAHALDHRDPKATQYCAMAKRLATDTGFEVANQAL
                     QLHGGYGYLQDFPLERIVRDLRVHQILEGTNEIMRVITARELFRQ"
     gene            complement(1284..1673)
                     /locus_tag="VHN39_10140"
     CDS             complement(1284..1673)
                     /locus_tag="VHN39_10140"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX2816747.1"
                     /translation="MMETPISVRPPASLRAPAGVLATIGDLSDLFGLTPRAIRHYEDR
                     GLLRPVRDSRNRRRFGMEDRQRLNVIVLLRRAGAPIPEIAALFERAGPDLRRHVASLL
                     DARERQLEADLFAVRAARAEVALGLDV"
     gene            complement(1679..1957)
                     /locus_tag="VHN39_10145"
                     /pseudo
     CDS             complement(1679..1957)
                     /locus_tag="VHN39_10145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517730.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
BASE COUNT          305 a          654 c          679 g          319 t
ORIGIN      
        1 accgccttct cgagggcggt ggccgacagg tcgaaggcgt ggacatcatg acccgccttg
       61 gcttgattgg cggccatgcc gccgcccatg ttgccgaggc cgatgaaggc gatacgggtc
      121 attgacgaat tccctcactc attggcggaa cagctccctg gcggtgatca cccgcatgat
      181 ctcgttggtg ccctccagaa tctggtggac gcgcaggtcg cggacaatgc gctccagcgg
      241 gaagtcctgc aggtagccgt agcccccgtg cagctgcagc gcctggttgg cgacctcgaa
      301 gccggtgtcg gtggcgagcc gcttggccat ggcgcagtac tgggtggcct tggggtcgcg
      361 gtggtccagc gcatgggccg cgcggcgcac catcaggcgg gccgcatcca ggtccgtcgc
      421 catgtcggcc aggcgccatt gcaggccctg gaaatccttc agcggattgc cgaactgctt
      481 gcgggtctcc aggtgcgcct tggcggtgtc gagcgccagc cccgcgccgc ccagcgagca
      541 ggaggcgatg ttgatccgcc cgccgtccag acccgccatg gcgaagcgga acccctcgcc
      601 tgccgcgccg atgcggtttt ccaccggcac gcggcagtcg tcgaagttca cctgggccgt
      661 gggctgcgac ttccagccca tcttcttctc ctgggccccg aaggagaggc cgggcgtgtc
      721 cttctccacc accacggccg agatgccctt cggacccgcc ccgccggtgc gcaccatgac
      781 cacatagatg tccgaggtcc ccgcgccgga gatgaaggcc ttggagccgt tcaggacgta
      841 gtgatcgcca tcctgcttcg ccgtggtcgc cagcgccgcg gcgtccgagc ccgagcccgg
      901 ctcggtcagg cagtaggagg cgatcagctc catggtcgtc agcttcggca ggaagcggcg
      961 gcgaagctcg tccgacccga accggtcgat catccacgag gccatgttgt ggatcgagat
     1021 gaaggccgcc gtggagacgt caccgtagct cagctgttcg aagacgatcg aggcgtcgag
     1081 ccggctgagc gccgagccgc ccacgtcctc ctgcacatag agccccgcga accccagttc
     1141 ggcggccttc cgcagcacat ccaccgggaa atggctctcg gcgtcccacc gcgcggaatg
     1201 gggcgcgagc tccgcggcgg cgaaggcgcg cgcggcgtcc tcgatggctc gctggtcttc
     1261 ggtgaggttg aaatccatgg agcttagacg tcgagaccga gcgccacttc ggcgcgcgcg
     1321 gcgcgcaccg cgaagaggtc ggcctcgagt tggcgttccc gggcgtccag aaggctggcc
     1381 acatgtcgcc tcaagtcggg gcccgcccgc tcgaaaagag cggcgatctc ggggatcggc
     1441 gcgccggctc gacgcaacag gacgatgacg ttcagccgct gacggtcttc catgccaaag
     1501 cgccgccggt tgcgggaatc acgaaccggc cggagtaggc ctcggtcttc gtagtgacgg
     1561 atcgcccggg gcgtgagacc gaacaggtcg ctgagatcgc cgatcgtcgc aaggacgccg
     1621 gctggcgcgc gcagggacgc cggcggccgg acggagatgg gcgtctccat catttccgtc
     1681 acttcatcgt cgggatgacg aaggctgagt cttcctgcga gccgtcgggc cagcgggcgg
     1741 tgatggtctt gaccttggtg tagaagcgca ccccctccat gccgtgctgg ttggtgtcgc
     1801 cgaaggccga gcgcttccag ccgccgaagg agtcgtaggc caccggcacc gggatcggca
     1861 cattgatgcc gaccatgccg acattgacct ggctggcgaa ctcgcgggcg gcgcggccgt
     1921 tccgggtgaa gatggcgacg ccgttgccct actggtg
//
LOCUS       DATAJL010000529         2693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_21937,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000529 DATAJL010000000
VERSION     DATAJL010000529.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2693
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21937"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..567
                     /locus_tag="VHN39_10150"
     CDS             <1..567
                     /locus_tag="VHN39_10150"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521862.1"
                     /note="involved in translesion DNA polymerization with
                     beta clamp of polymerase III; belongs to Y family of
                     polymerases; does not contain proofreading function;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEX2816748.1"
                     /translation="ARMDIKELAERFGTHGLRLSRLSHGEDHRAVNPNEDRKGISAET
                     TFNEDLSELSDLEDVLAELAEKVARHARADGLAGRVVTLKLRTTDFRILTRRRTIAVP
                     TQTARTLFAIGRELLAREATGRPYRLIGIGMAELVEAGAVEDDFFAGDERRALKGEQT
                     LDAIRARFGAGAVTSGRIFRAKSAAKPD"
     gene            718..1047
                     /gene="clpS"
                     /locus_tag="VHN39_10155"
     CDS             718..1047
                     /gene="clpS"
                     /locus_tag="VHN39_10155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HEX2816749.1"
                     /translation="MAERKMGDEDTGIRSAVVTQTKPKTQKPSMYRVLILNDDYTPME
                     FVVYVLEQFFNKSREDATRIMLHVHQHGVGVCGVFTYEVAETKVAQVVDTARRHQHPL
                     QCTMEKD"
     gene            1056..>2693
                     /locus_tag="VHN39_10160"
     CDS             1056..>2693
                     /locus_tag="VHN39_10160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2816750.1"
                     /translation="MPSFSRPLEESLHRAVAYANQRKHEYATLEHLLLSLVDDEEAAG
                     VMRACDVDLSALRTTLTNYVDTELRSLVVDDGEDAKPTAGFQRVIQRAVIHVQSSGRE
                     EVTGANVLVAIFSERESHAAYFLQEQDMTRYDAVNYIAHGIAKKAGAAEAKPVKGAAD
                     DEDKPTVKTGGEALEAYCVNLNEKAKQGKVDPLIGRSAEVERCIQILCRRTKNNPLLV
                     GDPGVGKTAIAEGLARKIVNHQVPEVLAGSTIFSLDMGSLLAGTRYRGDFEERVKQVV
                     KELENHPDAVLFIDEIHTVIGAGATSGGAMDASNLLKPALASGTLRCMGSTTYKEFRQ
                     HFEKDRALVRRFQKIDINEPTIDDTIKILKGLKIYYEEFHKLRYTNDAIKAAVELSAK
                     YINDRKLPDKAIDIIDEAGASQMLLPESRRKKIIGIKEVEAVVAKIARIPPKSVSKSD
                     TEALKQLETDLTGAVFGQAEAIQQLSSAMKMARAGLRESGKPIGCYLFSGPTGTGKTE
                     TARQLALTLGIELLRFDMSEYMERHTVSRLIGAPPGYV"
BASE COUNT          549 a          878 c          871 g          395 t
ORIGIN      
        1 gcgcggatgg acatcaagga gctggccgaa cggttcggta cgcacggcct caggctatcg
       61 cgcctgtcgc atggcgagga ccatcgggcg gtgaacccca acgaggaccg caaggggatc
      121 agcgcggaga ccaccttcaa cgaggacctg agcgaactct ccgatcttga ggatgtgctg
      181 gccgagctgg cggaaaaggt cgcccgccat gcccgcgccg acggcctagc cggccgcgtg
      241 gtgaccctga agctcaggac caccgacttc cgcatcctga cgcgccggcg gaccatcgcg
      301 gtgccgaccc agaccgccag gactctgttc gcgatcggtc gcgagctgct ggccagggag
      361 gcgaccgggc gcccctaccg cctgatcggc atcggcatgg cggagctggt cgaggccggg
      421 gcggtggagg acgacttctt cgccggcgac gagcgccgcg cgctcaaggg cgagcaaacg
      481 ctggatgcga tccgcgcaag attcggcgcg ggggctgtga catctgggcg catttttcgg
      541 gcaaagagcg cggcgaagcc cgactagcgc tcgctttgca ggcgaaagcg ccgccggaaa
      601 tgcccgcggt cgacggttta gctgggcgcc gtgacgattc gacccttcca aatgagttgg
      661 gtttgcatat ctaatccact gacggcgatg cggcagcgcc ggcaggagaa ggtttcaatg
      721 gccgaacgta aaatgggaga cgaggacacc ggcatccggt cggcggtggt cacccagaca
      781 aagcccaaga cacagaagcc ctcgatgtat cgggtgctga tcttgaacga cgactacacg
      841 ccaatggaat ttgtcgtcta tgtgcttgag cagttcttca ataagtcgcg cgaagacgcg
      901 actcgcataa tgctccacgt ccatcaacac ggcgtcgggg tgtgtggggt gttcacctac
      961 gaggtggcgg aaacaaaagt ggcccaggtc gttgatacgg cgcggcggca tcaacacccg
     1021 ctgcagtgca ctatggaaaa ggattaaggt cccccgtgcc ctcattctcg cggcctctcg
     1081 aagagtccct ccaccgcgcg gtggcttacg ccaatcagcg aaagcacgaa tacgcgacgc
     1141 tggagcacct gctcctgtcc ctcgtcgatg acgaggaagc cgccggggtg atgcgcgcct
     1201 gcgacgtgga tctctcggct ctgcgcacca cgctcaccaa ctatgtcgac accgaactgc
     1261 gctcgctggt cgtggacgat ggcgaggacg ccaaacccac cgcgggcttc cagcgcgtga
     1321 tccagcgcgc ggtgatccac gtccagtcct ccggtcgcga ggaagtcacc ggcgccaacg
     1381 tcctggtggc catcttctcc gagcgcgaga gccacgccgc ctatttcctg caagagcagg
     1441 acatgacccg ctacgacgcg gtcaactaca tcgcccacgg catcgccaag aaggccggcg
     1501 ccgcggaagc caagcctgtg aagggcgcgg ccgacgacga ggacaagccc accgtcaaga
     1561 ccggcggcga ggcgctcgaa gcctactgcg tgaacctcaa cgagaaggcc aagcagggta
     1621 aggtcgaccc gctgatcggc cgctcggccg aggtggagcg gtgcatccag atcctctgcc
     1681 ggcggaccaa gaacaacccg ctgttggtgg gcgacccagg ggtcggcaag accgccatcg
     1741 ccgaaggcct ggcccgcaag atcgtcaacc accaggtccc cgaggtcctg gcgggctcca
     1801 ccatcttctc actggacatg ggctcgctgc tggccggcac ccgctaccgc ggcgacttcg
     1861 aagagcgcgt gaagcaggtg gtcaaggaac tggagaacca ccccgacgcg gtgctgttca
     1921 tcgacgagat ccacacggtg atcggcgccg gcgcgaccag cggcggggcg atggacgcct
     1981 cgaacctgct gaagccggcg ctggcttcag gcaccctgcg gtgcatgggc tcgacgacct
     2041 acaaggagtt ccgccagcat ttcgagaagg accgcgccct cgtccggcgg ttccagaaga
     2101 tcgacatcaa cgagcccacc atcgacgaca cgatcaagat cctgaagggc ctgaagatct
     2161 actacgagga gttccacaag ctccgctaca ccaacgacgc catcaaggcg gcggtggagc
     2221 tgtcggccaa gtacatcaac gaccgcaagc tgccggacaa ggccatcgac atcatcgatg
     2281 aagccggcgc gagccagatg ctgctgccgg agagccggcg caagaagatc atcggaatta
     2341 aggaggtcga ggccgtcgtc gccaagatcg cccgcatccc gccgaagtcg gtgtccaagt
     2401 ccgacaccga ggcgctcaag cagctcgaaa ccgacctcac cggcgcggtg ttcggccagg
     2461 ccgaagcgat ccagcagctc tcctcggcca tgaagatggc gagggccggc ctgcgcgaat
     2521 cgggcaagcc catcggctgc tatctgttca gcgggcccac gggcaccggc aagaccgaga
     2581 cggcgcgcca gctcgccctc acgctgggca tcgaattgct gcgcttcgac atgagcgaat
     2641 acatggagcg ccacaccgtc agccgcctga tcggcgcgcc gccgggctat gtg
//
LOCUS       DATAJL010000530         1865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68105,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000530 DATAJL010000000
VERSION     DATAJL010000530.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68105"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..803)
                     /locus_tag="VHN39_10165"
     CDS             complement(<1..803)
                     /locus_tag="VHN39_10165"
                     /inference="COORDINATES: protein motif:HMM:NF013625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein"
                     /protein_id="HEX2816751.1"
                     /translation="MTRVGLVLLLSGWALAGATLAQPSAPPDLTPTERVLIIDTLSAR
                     TEFDDGPPADRSNSALWASLVRRATGELGLRITPSDVDPLWAIAPKPRQVETELRSAQ
                     ATGQLASWLAALPQGSPRYRALQAVRWRYRRIVDAGGWAQVPKEASSRAPGPAALATL
                     RARLVAEGYLAPGQATAPGFDTGLRQALALFQSHHDLKPDGALGAQPLGALNLPAEAR
                     LSQIDANLERWRWLPALPAQRVEVDVGGAEATLYVRDRAQLSMRVIVGDR"
     gene            complement(948..1289)
                     /locus_tag="VHN39_10170"
     CDS             complement(948..1289)
                     /locus_tag="VHN39_10170"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2816752.1"
                     /translation="MLIIALLSFGMELAVSGPASAAVRAADPAVERGHQLAMRRCAEC
                     HAVGRGRESPDGDAPRFSTLRLRFNELSLERRLAGIPWGEHAGMPPVGLTNEDRQDLA
                     AYIESLRSPRG"
     gene            1565..>1865
                     /locus_tag="VHN39_10175"
     CDS             1565..>1865
                     /locus_tag="VHN39_10175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816753.1"
                     /translation="MSIALQLLLHPILHEQAVFVAFAPAVIAGAIVGGAATALGVTGL
                     GLIAGLAVAGPALARDSVDLAVAILFIAFGAAAALAARRFGRRDAARVLEDLTERE"
BASE COUNT          258 a          654 c          682 g          271 t
ORIGIN      
        1 cggtcgccga cgatcacccg catggaaagc tgcgcccggt cacggacgta cagcgtcgcc
       61 tccgcgccgc cgacatcgac ctcgacgcgc tgggccggaa gggccggcag ccagcgccag
      121 cgttcgagat tggcgtcgat ctggctgagc cgcgcctcgg ccggcagatt gagggccccc
      181 aggggctgcg cgcccagcgc cccgtcgggt ttcaggtcat ggtggctctg gaagagggcg
      241 agggcctgcc tgaggccggt gtcgaagccc ggagcggtcg cttggcccgg cgcgaggtag
      301 ccttcggcga caagtcgcgc gcgcagggtc gcgagggccg ccggaccagg cgcgcggctt
      361 gaggcctctt tgggaacctg cgcccatccg ccagcgtcga cgatccggcg atagcgccag
      421 cgcaccgcct gcagggcgcg atagcgcggc gatccctgcg gcagcgccgc cagccaggac
      481 gccagctgtc cggtcgcctg cgcggatcgc agctcggtct cgacctgtcg gggcttcggc
      541 gcgatcgccc agagcggatc gacgtccgat ggggtgatgc gaaggcccaa ctcgccggtg
      601 gcgcgccgga cgagggacgc ccagagcgcg ctgttggacc gatcggcggg cgggccgtca
      661 tcgaactccg tacgcgcgct caaggtgtcg atgatcaaga cgcgttcggt cggcgtgagg
      721 tccggcgggg ccgaaggctg cgccagcgtt gcgccggcga gggcccagcc ggacagcaga
      781 aggacaaggc caaccctggt catcgcacgg gccgccgcac caggcgctct gtcgacatgg
      841 ccatccggct cgcctcactt tatgcaggcg cactgtcgcc aggtgggcgg atcgggcctt
      901 gagccggatc aaatgcgaga ccggtccccg ccttggctgg ccgccgttca accacgcggc
      961 gagcgcaggc tttcgatgta ggcggccaga tcctggcgat cttcattggt caggccgacg
     1021 ggcggcatgc cagcgtgctc gccccagggg atgccggcca gccgccgttc gaggctgagt
     1081 tcgttgaagc ggaggcgcag ggtcgaaaat cgcggcgcgt cgccgtcggg gctctcccgg
     1141 cctcgcccga ccgcgtggca ttcggcgcat cggcgcatcg ccagctggtg gccgcgttcg
     1201 acggcggggt cggcggcgcg gaccgccgct gacgccggcc cggagaccgc aagctccatc
     1261 ccaaaggaca gcagggcgat gatcagcaac tctcgacgca tggcaacctc cctggagggc
     1321 gcaccagcct aggccgttcg ccgccgccgt cgcctccgta gcgttaccta gggaatgctg
     1381 cggactggcc gctctcgggc aggatcgaga accttggccg gtgatgcagc catcgattga
     1441 tcgggcgcac ggccccgcct atcccttgcg gatgccgaac cgcgccggtc catggccgac
     1501 agcctcagct ctcaccgtcc gcagtcgatg gacctcctat gtcatcgccg gcggggcagg
     1561 ggctgtgtcc atcgccctgc agttgctgct gcacccgatt ctccacgagc aggccgtctt
     1621 cgtcgccttc gcacctgccg tgatcgccgg cgcgattgtc ggcggcgcgg cgacggcgct
     1681 gggggtcacc ggactggggc tgatcgcggg cctggccgtc gccggacccg cactcgcgcg
     1741 cgacagcgtg gacctcgccg tcgcgatcct ctttatcgcc tttggggccg cggcggcgct
     1801 cgcggcccgg cgcttcgggc gcagagacgc cgcgcgggtg ctggaggatc tgacagagcg
     1861 cgagg
//
LOCUS       DATAJL010000531         3666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68119,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000531 DATAJL010000000
VERSION     DATAJL010000531.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3666
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68119"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..300
                     /locus_tag="VHN39_10180"
     CDS             <1..300
                     /locus_tag="VHN39_10180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein"
                     /protein_id="HEX2816754.1"
                     /translation="IDFKKGCFVGQETTSRMKRRGQIKSRMLPIAFEGPAPAPGAEVL
                     AGELRAGEVLSGGDGRAMALLRLDRAEGQSLTVDGRKVTVERPAWFLEALGVEAA"
     gene            complement(271..1143)
                     /locus_tag="VHN39_10185"
     CDS             complement(271..1143)
                     /locus_tag="VHN39_10185"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816755.1"
                     /translation="MAFEGFKLSQIDVGEVSLRVRHGGSGPPLLLLHGYPETHMMWNQ
                     VAADLARDFTVIAPDLRGYGKSTLPADSDDHETYSKRAMARDAIALMRHFGFERFDVA
                     GHDRGGRVGYRLALDHPQAVRRLSILDIIPTGEVWARADRRFALGYWHWSFLPQRFSE
                     AMINPDPEMFFFGNQFRAILKDFGEAYADYLDCAKDPQTVHAMCEDYRAGATYDRLAD
                     EADKAAGRTIGCPVQILWGGKGAVGAWYDVLKVWRSWAPDLRGQAIDCGHFLPEEKPA
                     ETLAALRSFHAEGL"
     gene            1194..1778
                     /locus_tag="VHN39_10190"
     CDS             1194..1778
                     /locus_tag="VHN39_10190"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEX2816756.1"
                     /translation="MAEPVIRCGWRGMAGDPLYEAYHDTEWGVPEYDSRALWEKLVLD
                     GFQAGLAWITILRKRNAFRAAFEDFDPEKVAAYGEADRARLMADAGIVRSNAKIDAAI
                     QSAKIYLAMRDRGEDFSEFCWAFTGGKPLQNRWEDVGQVPAKTALAEEVATALKARGF
                     KFVGPVIVYAWMQAVGMVNDHLTCCFRHEAVKPR"
     gene            1775..2074
                     /locus_tag="VHN39_10195"
     CDS             1775..2074
                     /locus_tag="VHN39_10195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816757.1"
                     /translation="MIRRAALVLILAVSLAACQSVGPVHIGDINQGRAVVLAKGELAR
                     RHMEAVAGWRAEVTDYATVWVVTYYRPADRTDGPPFVRVSLNKHSERIVAVTTGE"
     gene            2095..2721
                     /locus_tag="VHN39_10200"
     CDS             2095..2721
                     /locus_tag="VHN39_10200"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEX2816758.1"
                     /translation="MFLERAFIGGPACGVDEAGRGPWAGPVSAAAVILNPRKVPKGLD
                     DSKKLSARTREALELEIKAKAVAWGGGFASVEEIASLNILHAAGLAMRRAIEGLSVAP
                     AFALVDGNYRFELPCEVKTVVGGDGKSKSIAAASILAKVARDRLMIEMDARYPGYGFA
                     SHKGYHAEIHVSALQTLGPCEIHRMGWAPVKLALMGHAPRQDDLPFGD"
     gene            2772..>3666
                     /locus_tag="VHN39_10205"
     CDS             2772..>3666
                     /locus_tag="VHN39_10205"
                     /inference="COORDINATES: protein motif:HMM:NF021599.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2332 domain-containing protein"
                     /protein_id="HEX2816759.1"
                     /translation="MSDDPAVLQALRFQSGACRAGGSPLNGALLELAAEDWAAGGPVR
                     ELMAPWADDDLKAQFDAATPLRLIGALHELALSGEEPALSAAYRALDAEAIWPAAHTA
                     MVSRRDRFAAFMSHEPQTNEVRRSICLVGGFLAIAAATGLPLRCFEIGASAGLNTSWD
                     RYRYSLGAAAWGDPASPLAMDTDWQGPSPPTGAEIRVIERAACDRRPTDLHDRDQRRR
                     LLAYIWADQTERLARIRTAIDMALAYEVAVEAADAVAWVGKRVAPEDGAATVLFHSVF
                     WQYMPAGSQTVLRRTIQETGAR"
BASE COUNT          550 a         1259 c         1306 g          551 t
ORIGIN      
        1 atcgacttca agaagggctg cttcgtcggc caggagacca cctcgcgcat gaagcggcgc
       61 ggccagatca agagccgcat gctgcccatc gccttcgaag ggcccgcgcc cgcgccgggc
      121 gccgaggtgc tggccggcga acttcgggct ggcgaggtgc tctcgggcgg tgacggtcgg
      181 gccatggccc tgctccggct cgaccgcgcc gaaggtcaga gccttaccgt cgatggccgc
      241 aaggtcactg tcgagcggcc cgcctggttc ctagaggccc tcggcgtgga agctgcgtag
      301 ggcggcgagc gtctcggcgg gtttctcctc tggcaggaag tggccgcagt cgatggcctg
      361 gccgcgcaga tccggcgccc aggaccgcca aaccttcagc acgtcgtacc aggcccccac
      421 cgcgcccttg ccgccccaga ggatctgcac cgggcagccg atggtccggc cggccgcctt
      481 gtccgcttcg tccgccagcc ggtcgtatgt cgccccggcg cggtagtcct cgcacatggc
      541 atggaccgtc tgcgggtcct tcgcacagtc caggtagtcg gcgtaggcct cgccgaagtc
      601 cttcaggatc gcgcggaact ggttgccaaa aaagaacatc tccgggtccg gattgatcat
      661 ggcctcggaa aagcgctggg gcaggaaaga ccagtgccag tagcccagcg caaagcgccg
      721 gtcggcgcgg gcccagacct cgccggtggg gatgatgtcg aggatcgaca ggcgtcgcac
      781 cgcctgcggg tggtccagcg ccaggcgata accgacccgg ccgccgcggt cgtggccggc
      841 cacatcgaac cgctcgaacc cgaaatgcct catgagcgcg atggcgtcgc gagccatcgc
      901 gcgcttggaa taagtctcgt ggtcgtcgct gtcggcgggc agggtgctct tgccatagcc
      961 gcgaaggtcg ggcgcgatga ccgtgaagtc cctggccagg tccgccgcca cctggttcca
     1021 catcatgtgg gtctcgggat agccgtgcag cagcaggagc ggcgggcccg accctccgtg
     1081 gcgaaccctg aggctcacct cgccgacgtc gatctgcgac agtttgaaac cttcgaaggc
     1141 catggtcgaa ctcgcgcttg tgtccggcca ccggctcggc tgagagtgcg ccgatggctg
     1201 aacccgtgat ccgatgcggc tggcgcggca tggccggcga cccgctctat gaggcctacc
     1261 acgacaccga gtggggcgtg cctgagtatg actcgcgggc gctgtgggaa aagctggtgc
     1321 tggacggctt ccaggcgggc ctggcctgga tcactatcct tcggaaacgc aacgctttcc
     1381 gcgcggcctt cgaggacttc gaccccgaga aggtggcggc ctatggcgag gccgaccggg
     1441 cccggctgat ggccgacgcc ggcatcgtgc gctccaacgc caagatcgac gccgctattc
     1501 agtcagccaa gatctatctc gccatgagag accggggcga ggacttctcc gagttctgct
     1561 gggccttcac cggcggcaag ccgctgcaga accgctggga ggacgtcggc caggtcccgg
     1621 ccaagacggc gctcgccgag gaggtcgcga ccgcgttgaa ggccaggggc ttcaagttcg
     1681 tgggcccggt gatcgtctac gcctggatgc aggctgtcgg catggtcaac gaccacctga
     1741 cctgctgctt ccgccatgag gcggtgaagc ctcgatgatc cggcgcgcgg ccctcgttct
     1801 gatcctggca gtgagcctgg ccgcctgcca gtcggtcggg ccggtgcata tcggcgacat
     1861 caaccagggc cgcgccgtgg tgctggccaa gggcgaactc gcgcgccggc acatggaggc
     1921 ggtcgccggc tggcgcgccg aggtcaccga ctacgccacc gtctgggtgg tgacctacta
     1981 ccggcccgct gaccgcaccg acgggccgcc gttcgtgcgc gtcagcctga acaagcacag
     2041 cgagcggatc gtcgccgtga cgaccgggga atagccgtgg ccgctggtcc caccatgttc
     2101 ctggaacgcg ccttcatcgg cgggccggcc tgcggtgtcg acgaggcggg gcgtgggccc
     2161 tgggcggggc cggtgagcgc cgcggcggtg atcctcaatc cgaggaaggt ccccaagggt
     2221 ctcgatgatt ccaagaagct gtcggccagg acccgcgagg cgctggaact ggagatcaag
     2281 gccaaggcgg tggcctgggg cggcggcttc gccagtgtcg aggagatcgc cagcctgaac
     2341 atcctgcacg ccgcgggcct ggccatgcgc cgcgccatcg aggggttgtc cgtcgcgccg
     2401 gcgttcgcgc tggttgacgg caactatcgc ttcgagctgc cctgtgaggt gaagaccgtg
     2461 gtgggcggcg acggcaaatc caagtccatc gccgcggcct cgatcctggc caaggtcgcc
     2521 cgcgaccggc tgatgatcga gatggacgcc cgctaccccg gctacggctt cgccagccac
     2581 aagggctacc acgccgagat tcacgtctcg gccctgcaga ccctgggccc ctgcgagatt
     2641 caccggatgg gctgggcgcc ggtgaagctc gccctgatgg gccacgcgcc tcgccaggac
     2701 gacctgccgt tcggcgattg atcggctgaa tcaagcttga tccccgcgcg gcgacgcggg
     2761 acgcaagggg catgagcgac gatcccgctg tcctgcaggc cctgcggttc cagtccggcg
     2821 cgtgtcgggc cggcggctcg cccctgaacg gcgcccttct cgagctggcc gcggaagact
     2881 gggccgccgg cggcccggtg cgtgagctga tggcgccctg ggcagacgac gacctcaagg
     2941 cccagttcga cgcggccacg cccctgcggc tgatcggcgc cctgcatgag ctggcgctgt
     3001 caggcgagga gccggcgctg tcggcggctt accgggcgct ggacgccgag gcgatctggc
     3061 cggcggcgca caccgccatg gtcagccgcc gcgaccggtt cgccgccttc atgagccacg
     3121 agccgcagac caacgaggtg cgccgctcga tctgcctggt gggcggcttc ctggcgatcg
     3181 cggcggccac gggactgccg ctgcgctgtt tcgagatcgg ggccagcgcg ggcctgaaca
     3241 cctcctggga ccgctaccgc tacagcctgg gcgccgccgc ctggggcgat ccggcgtcac
     3301 cgctggccat ggacaccgac tggcaggggc catccccgcc gaccggggcc gagatccggg
     3361 tgatcgagcg ggccgcctgc gaccgccgtc ccacggacct gcacgaccga gaccagcgtc
     3421 gccgcctgct cgcctacatc tgggccgacc agaccgagcg gctggcgcgg atccgcaccg
     3481 ccatcgacat ggcgttggcc tacgaggtag ccgtggaggc ggccgatgcc gtggcctggg
     3541 tgggcaagcg ggtcgcgcct gaggacggcg cggcgaccgt gctcttccat tcggtgttct
     3601 ggcagtacat gcccgccggg agccagacgg tgctgcgccg gacaatccag gagaccggcg
     3661 cccggg
//
LOCUS       DATAJL010000532         2023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_107030,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000532 DATAJL010000000
VERSION     DATAJL010000532.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107030"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..246)
                     /locus_tag="VHN39_10210"
     CDS             complement(<1..246)
                     /locus_tag="VHN39_10210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SapC family protein"
                     /protein_id="HEX2816760.1"
                     /translation="MTTTAQPGITGNVLFYQQPEPLSPEVHGKMGVRSMDGPFGFAKV
                     GHAIPLTVGEFPPAAMTGPIIFVGDEKLPISVMGLNAG"
     gene            452..1342
                     /locus_tag="VHN39_10215"
     CDS             452..1342
                     /locus_tag="VHN39_10215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC/PaaZ C-terminal domain-containing protein"
                     /protein_id="HEX2816761.1"
                     /translation="MPIFYPDILDQKTAARTFTYGDKDVMLYALGVGMGRDPMDETEL
                     AFVYEKGLKVIPTAATVLSSAGGRPARGADQVDQKPGHRPSVINFLMVVHGEQKVELH
                     KPLPTSGAFTAQGRTIGAYDKGKDKGAVIINETVWTDEKGEKVATLTGSTFARGDGGF
                     GGPSEGQPEPHEIPGRKADLSVDIATREDQALLYRLNGDRNPLHSDPESAKRSGFPRP
                     ILHGLCTYGITCRAVLQAITGFDPDQILSHQARFSAPVFPGDTITVDLWKDGPVISFE
                     ARVKERGVTVIKNGKTVLRS"
     gene            1377..>2023
                     /locus_tag="VHN39_10220"
     CDS             1377..>2023
                     /locus_tag="VHN39_10220"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX2816762.1"
                     /translation="MIRSLFLTGAAVLMLGAAPAHRPPVDASMAGPAPTKLAGYLSAD
                     DIDGQTVIGAPPALDSPRGKADRTIYLETRALAGSPRWAQATKDNDLWNGGALERYAC
                     ALGRPISPAALPRTYHLLQRVELDARTVGTPPKEHYNRIRPLIGDDRPVCVKREDWMK
                     TNASYPSGHAMAGWAWGLVLGELAPARASGLMQAGREIGDSRVICGVHYQSDVEAG"
BASE COUNT          341 a          716 c          670 g          296 t
ORIGIN      
        1 cccggcgttc aggcccatca ccgagatcgg cagcttctca tcgcccacga agatgatcgg
       61 gccggtcatg gcggccggcg ggaactcgcc gacggtcagc gggatggcgt gaccgacctt
      121 cgcgaagccg aacgggccgt ccatgctacg cacgcccatc ttgccgtgca cttccggcga
      181 gagcggttcg ggctgctggt agaagaggac gttgccggtg atgccaggct gggcggtggt
      241 cgtcatgaag cgccttcgaa atcaaggagg gccgcgcggg cgaaagggcc gtccgcggga
      301 agtcgccgct tctagccgat cagaccctcg cccgcaaatg cggctcctgg ccgcttgcac
      361 gcccccacct tgcgccaact gggccgaggg gctttgatcc ggagcattat tcagcggccg
      421 ctagagccag cccataatcg gaggaccatt cgtgcccatc ttttacccgg acatcctcga
      481 ccagaagacc gccgcgcgca ccttcaccta tggcgacaag gacgtgatgc tttatgccct
      541 gggcgtcggc atggggcgcg atcccatgga tgagacggag ctggccttcg tctacgagaa
      601 gggcctgaag gtgatcccga cggcggccac ggtgctctcc tcggccggcg gacggcccgc
      661 ccgcggcgcc gaccaggtcg accagaagcc cgggcaccgc cccagtgtga tcaacttcct
      721 gatggtggtg cacggcgaac agaaggttga gctgcacaag ccgctcccga cctcgggcgc
      781 cttcaccgcc cagggccgca cgatcggggc ctatgacaag ggcaaggaca agggcgctgt
      841 gatcatcaac gagaccgtct ggaccgacga gaagggcgaa aaggtcgcca cgctcaccgg
      901 ctcgacgttc gcgcgcggcg acggcgggtt cggcgggccc tccgagggcc agcccgagcc
      961 gcacgagatc cctggccgca aggccgacct ctcggtcgac atcgcgaccc gggaggacca
     1021 ggccctgctt taccgcctga acggcgaccg taatccgctg cattccgacc cggagagcgc
     1081 caagcggtcc ggcttcccac ggccgatcct gcatggcctg tgcacctacg gcatcacctg
     1141 ccgcgcggtg ctgcaggcga tcaccggctt cgaccccgat cagatcctga gccaccaggc
     1201 gcggttctcg gcgccggtgt tccctggcga caccatcacg gtagacctct ggaaggacgg
     1261 gccggtgatt tcgttcgaag cccgcgttaa ggagcgcggg gtcaccgtca tcaagaacgg
     1321 caagaccgtt ctgcggtcct gacctcaccc tctcctcaag acttggcgga gcttccttga
     1381 tccgatccct gttcctgacc ggcgcggctg tcctgatgct gggcgccgcg ccggcgcatc
     1441 gcccaccggt cgacgcctcc atggcgggac cggcgccgac aaaactcgcg ggctatctgt
     1501 cggccgacga catcgatggc cagacagtga tcggggcgcc gccggccctc gactcaccgc
     1561 gcggcaaggc ggatcgcacc atctatctgg agacccgcgc gctggccggt tcgccgcgct
     1621 gggcccaggc caccaaggac aacgacctgt ggaacggcgg ggcgctggag cgctacgcct
     1681 gcgcgctcgg ccggccgata agccccgcgg ccctgcccag aacctatcac ctgctgcagc
     1741 gggtcgagct cgacgcccgc accgtcggca ccccgcccaa agagcactac aaccgcatcc
     1801 gaccgctgat cggcgacgac cggccggtct gcgtcaagcg cgaggactgg atgaagacca
     1861 acgcctccta tccctccggc cacgccatgg ccggctgggc ctggggcctg gtcctggggg
     1921 agctggcgcc agccagggct tcgggcctga tgcaggccgg gcgcgagatc ggcgacagcc
     1981 gggtgatctg cggcgtccac taccagtccg acgtggaggc cgg
//
LOCUS       DATAJL010000533         1663 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_47954,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000533 DATAJL010000000
VERSION     DATAJL010000533.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47954"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1016)
                     /locus_tag="VHN39_10225"
     CDS             complement(<1..1016)
                     /locus_tag="VHN39_10225"
                     /inference="COORDINATES: protein motif:HMM:NF016974.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl/asparaginyl beta-hydroxylase
                     domain-containing protein"
                     /protein_id="HEX2816763.1"
                     /translation="MTRRAAGDLAGALTAIDEALNLDPYHFVALLSKGALIERTSGER
                     AAAAIYRNALMIVPPDDELPPPLRAPTERARQVVARTMEGLEAHLRARTGAVKTEVSG
                     EARRRFEESLGIFAGRTRVYTQEPLFLHYPRLPAIPFYDRGLFPWFEELEAATDMIRG
                     ELEGALAAAKDDFTPYITYPKGTPVNQWGELNHSRRWSSLHLWRDGVRYESACKLCPE
                     TTALLARLPLADQPGFAPTAMFSALDARTAIPAHTGSTNVRLICHLPLILPGPARFRV
                     GNETREWKMGEAWVFDDTIEHEAWNDSDRPRTILICDVWNPRLDQEERETITALMSAM
                     DRFNG"
     gene            1249..>1663
                     /locus_tag="VHN39_10230"
     CDS             1249..>1663
                     /locus_tag="VHN39_10230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEX2816764.1"
                     /translation="MLDWIHAIILGLVEGLTEFIPVSSTGMLLLTKLALGLPDGFWDT
                     FTVLIQLGAILAVVVIYFRRLWTIALLIPTQPRARNFVLGLLIAFIPAAIAGLLLHDT
                     IKQVLFESPRLICVSLIAGGVVLLLIDRYAPYPTRK"
BASE COUNT          234 a          582 c          560 g          287 t
ORIGIN      
        1 ccgttgaacc ggtccatcgc cgacatcagc gccgtgatcg tctcgcgttc ttcctgatcg
       61 agacgcggat tccacacgtc gcagatcagg atggtgcgcg gccggtcgct gtcgttccag
      121 gcctcgtgct cgatggtgtc gtcgaacacc caggcctcgc ccatcttcca ttcgcgggtt
      181 tcgttgccga ccctgaaccg cgccgggccc ggcaggatca gcggcaggtg gcagatcagg
      241 cgcacattgg tcgagccggt gtgcgcgggg atggccgtgc gtgcgtccag cgccgagaac
      301 atggcggtgg gcgcgaaccc cggctggtcg gccagcggca ggcgcgccag cagggcggtg
      361 gtctcggggc acagtttgca ggcgctctca tagcgcacgc cgtcccgcca aaggtgcagc
      421 gagctccagc gccgcgaatg gttgagctct ccccactggt tgacgggcgt acccttcgga
      481 taggtgatgt agggggtgaa gtcgtccttg gccgcggcca gcgcgccctc gagctcgccg
      541 cggatcatgt cggtggcggc ttccagctcc tcgaaccagg ggaacaggcc gcggtcatag
      601 aacgggatcg ccggcagccg cggatagtgc aggaagagcg gctcctgcgt gtagacccgg
      661 gtccggccgg cgaagatgcc caggctctcc tcgaaccgcc gccgggcttc gcccgacacc
      721 tcggtcttca ccgccccggt gcgggcccgc aggtgcgcct caagcccctc catggtccgg
      781 gccaccactt ggcgggcgcg ttctgtgggc gcgcgcagcg gcggcggcag ctcgtcgtcc
      841 ggcggcacga tcatcagggc gttcctgtag atcgccgcgg ccgcccgctc gccgctcgtc
      901 cgctcgatca gggccccctt cgagagcagg gccacgaagt ggtaggggtc gaggttcagg
      961 gcctcgtcga tggcggtgag cgcgcccgcc agatcgccgg cggcgcggcg ggtcatagcc
     1021 cgctgaaggg ccgcctgcac gcccgcttca acgtccggtt ggcggccgtc cgccgacgcc
     1081 atgctgatct accccatgcc gtctgggccg cccgcgaatc ttggcccgag acattttcgc
     1141 ggacagggat atacgccgac attcggggcg gcgaggggaa aggcggataa acgccttctt
     1201 caccatagtc gcccactcct cagcaccgcg gcttaagcgg gggaacgcat gctagactgg
     1261 atccacgcca tcatcctggg cctcgtcgag ggcctgaccg agttcattcc ggtgtcctcc
     1321 accggcatgc tgctcctgac caagctggcg cttggcctgc ccgacggctt ctgggacacc
     1381 ttcaccgtgc tgatccagct gggcgcgatc ctggccgtgg tggtgatcta cttccggcgc
     1441 ctctggacca tcgccctgct catcccgact cagccccggg cgcggaactt cgtgctgggg
     1501 ctgttgatcg ccttcatccc ggccgccatc gcgggcctcc tgctgcacga cacgatcaag
     1561 caggtgctgt tcgagagccc gcggctgatc tgcgtctcgc tgatcgcagg cggcgtggtc
     1621 ctgctgctca tcgaccggta cgcgccctat cccacccgca aag
//
LOCUS       DATAJL010000534         3563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_82659,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000534 DATAJL010000000
VERSION     DATAJL010000534.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82659"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..985
                     /locus_tag="VHN39_10235"
     CDS             <1..985
                     /locus_tag="VHN39_10235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2816765.1"
                     /translation="SVWPQDPGFNTARVGGVTSMLILPGSGNLIGGRGVVLRNIPART
                     VQDMKFPDAPYALKMACGENPKRVYGSKNRAPSTRMGNVAGYRAAWINAADYKRKWDD
                     YRDKVAKNEKADPPKRDLGLDTLAAVLRGEIQVENHCYRADEMAQMIDISHEFGYHIA
                     AFHHAVEAYKIADLLAANDICVATWANWWGEKLEMLDGIEANAAMVNAAKGGCAIIKS
                     DDPDLIQRLNQEAAEALAAGRAAGYTITEADAIKWITANPAKALGIAKQTGSLEPGKR
                     ADIVIWDHDPFSIYARTDRVYLDGAISYDRHDPRYQSRSDFELGQPGEGAH"
     gene            985..2340
                     /locus_tag="VHN39_10240"
     CDS             985..2340
                     /locus_tag="VHN39_10240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2816766.1"
                     /translation="MRKVLMGACALAVLAASATQAETVAITHARILTAAAAGEIVDGT
                     VVIRDGKIVSVGSSAAVPAGARVIDAQGGVVAPGFFATNSALGSVEVNSEGSDLRVDN
                     PAIGASFDIQYTLNPESILLPVARLGGLTSAVVMPKPGRGRGGNDDDETDARAYTAGG
                     GDGSRSHALFAGQAAVIHLAKGEDILTRAKVGMVVPFGQAGAGIAGGARGAEIIALKT
                     ALQDVRDYMKNRAAYDRAGYRELPLSKGDLEALIPVVQGKMPIIADVHRASDIRAVLK
                     LARVEGFKVILDGAEEGWMVAAEIAKAGVPVLLNPTNDRPDSYEMLAATMDNAARLQA
                     AGVTVAIESEGGDYRARETRYDAGNAVAHGMPYAAALAAITINPARIFGVADRTGSLE
                     AGKDADLVIWTADPFEPLSQPTAVFIHGQQQPMTSRQMELRDRYKDLNRPLPPGYSHG
                     G"
     gene            2469..3230
                     /locus_tag="VHN39_10245"
     CDS             2469..3230
                     /locus_tag="VHN39_10245"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816767.1"
                     /translation="MKSISIVAAALVLAAGSAGAANLVQNGGFDSASYASNSQFGAGF
                     GGEGVTSWMGGGGNHLQFFYIGGTQSTTNAVNQFGDPKGYFYDSFSTLSPTTGGNFVA
                     LDGDSDFTGFIQQDISGLVVGQTYSLSFDWAAAQLKNRIGPITEQLQVSLGSDTFLTS
                     IAAISGNVSADIDPTGGPGGFGGWMTTTHSFTATATTETLKFLSVGTPNGLPPIAALD
                     SISLTSVPEPAAWMMMLLGFGGLGAVLRRRRAVAA"
     gene            complement(3374..>3563)
                     /locus_tag="VHN39_10250"
     CDS             complement(3374..>3563)
                     /locus_tag="VHN39_10250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816768.1"
                     /translation="WGAVQDPDRMPISRQCLSGVRMWPALGPNGAISGRGVTTTGPRH
                     SQAVRLRTLAIGRSERKQ"
BASE COUNT          618 a         1302 c         1121 g          522 t
ORIGIN      
        1 ctccgtctgg ccgcaggacc cgggcttcaa caccgcccgc gtcggcggcg tcacctcgat
       61 gctgatcctg cccggctccg gcaacctgat cggcggccgc ggcgtcgtct tgcgcaacat
      121 ccctgcccgc accgtccagg acatgaagtt ccccgacgct ccctacgcgc tgaagatggc
      181 ctgcggcgag aaccccaagc gggtctatgg ctcgaagaac cgcgcgccct ccacccgcat
      241 gggcaatgtg gccggctacc gcgccgcctg gatcaacgcc gccgactaca agcgcaagtg
      301 ggacgactac cgcgacaagg tcgccaagaa tgagaaggca gatccgccga agcgcgacct
      361 tggcctcgac accctggccg ccgtgctgcg cggcgagatc caggtggaga accactgcta
      421 ccgggccgac gagatggccc agatgatcga tatctcccac gagttcggct accacatcgc
      481 cgccttccac cacgcggtgg aggcatacaa gatcgccgac ctgctggccg ccaacgacat
      541 ctgcgtcgcc acctgggcca actggtgggg cgagaagctg gagatgctcg acggcatcga
      601 ggccaatgcg gccatggtca acgcggccaa gggcggttgc gcgatcatca agtccgacga
      661 ccccgacctg atccagcggc tgaaccagga ggccgccgaa gccttggccg ccggccgcgc
      721 cgcgggctac acgatcaccg aggccgacgc catcaagtgg atcaccgcca atccggccaa
      781 ggccctgggc atcgccaaac agacgggcag cctggagccc ggcaagcggg ccgacatcgt
      841 catctgggac cacgacccct tctcgatcta cgcccgcacc gaccgggtct acctggacgg
      901 cgcgatctcc tacgaccgcc acgatccccg ctatcaatcg cgctccgact tcgagctcgg
      961 ccagcccggc gaaggagctc actgatgcgc aaggttctga tgggcgcctg cgccctggcc
     1021 gtcctcgccg cttcggccac ccaggccgag accgtcgcca tcacccacgc ccgcatcctc
     1081 acggccgcag cggccggcga gatcgttgac gggaccgtgg ttatccgcga cggcaagatc
     1141 gtctccgttg gctccagcgc ggccgtcccc gcgggcgccc gggtgatcga cgcccagggc
     1201 ggcgtcgtcg cacccggctt cttcgccacc aactccgccc tgggctcggt ggaggtgaat
     1261 tcggaaggca gcgaccttcg ggtcgacaac ccggcgatcg gggcctcctt cgacatccag
     1321 tacacgctca atccggagtc gatcctcctg ccggtcgctc gcctgggcgg cctgaccagc
     1381 gcggtcgtca tgcccaagcc cggccgcggc cggggcggca atgacgacga cgagacggac
     1441 gcccgggcct acacggccgg cggtggcgac ggcagccgct cccacgccct cttcgcgggc
     1501 caggccgccg tgatccacct ggccaagggc gaggatatcc tgacccgcgc caaggtcggc
     1561 atggtggtcc ccttcggcca ggccggcgcc ggcatcgccg gcggcgcgcg cggggcggaa
     1621 atcatcgcgc tcaagaccgc cctgcaggac gtccgcgact acatgaagaa cagggccgcc
     1681 tacgaccggg ccggctatcg cgagctgccg ctctccaagg gcgacctcga ggcgctgatc
     1741 ccggtcgtcc agggcaagat gccgatcatc gccgacgtcc atcgcgcctc cgacatccgc
     1801 gccgtcctaa agctcgccag ggtggaaggt ttcaaggtca tcctcgacgg cgccgaggag
     1861 ggctggatgg tggccgccga gatcgccaag gccggcgtcc ccgtcctgct caaccccacc
     1921 aacgaccggc cggacagcta cgagatgctg gccgccacca tggacaacgc cgcgcgcctc
     1981 caggccgccg gcgtcaccgt ggccatcgaa agcgaaggtg gcgactaccg cgcccgcgag
     2041 acccgctacg acgcgggcaa tgcggtagcc cacggcatgc cctatgcggc ggcgttggcg
     2101 gccatcacca tcaaccccgc ccggatcttc ggggtcgccg accgcacagg ctcgctggag
     2161 gccggcaagg acgccgacct ggtgatctgg accgccgacc ccttcgagcc gctcagccag
     2221 cccaccgcgg tcttcatcca cggccagcaa cagccgatga cctcgcgcca gatggaactt
     2281 cgggaccgct acaaggacct gaatcggccg cttccaccgg gctacagcca cggaggttag
     2341 aggggcggtc cgccccactt cgcgtgtggc gtgaatgcgc tttcggccaa ggttaatggg
     2401 cgtaaggatg cggcctagaa tcatcagggt ccgcattcgg gggcggtccg acagccagga
     2461 tattacgtat gaagtcgatc agcatcgttg cggccgccct tgtccttgcc gcggggagcg
     2521 ccggcgccgc gaacctcgtg cagaatggcg gcttcgatag cgccagctac gccagcaact
     2581 cgcagttcgg agccggtttc ggcggcgaag gggtgacgag ctggatgggc ggcggcggca
     2641 accacctgca gttcttctat atcggcggca cgcagtcgac gaccaacgcc gtcaatcaat
     2701 tcggcgatcc caagggctat ttctacgaca gcttctcgac gctcagcccg acgacaggtg
     2761 gcaatttcgt cgccctcgac ggggacagcg acttcaccgg attcatccag caagacatct
     2821 caggcctggt ggttggccag acctacagcc tgtcgtttga ctgggcggcc gcgcagctga
     2881 agaaccgtat cgggccgatc accgaacagc ttcaggtcag cctcggctcc gacaccttcc
     2941 tcacgtccat cgccgcgatc agcggcaacg tgtccgcaga catcgatccg accggaggcc
     3001 cgggcggctt cgggggctgg atgaccacca cccacagttt caccgcaacg gccaccacgg
     3061 aaaccttgaa gtttctgtcg gtgggaaccc ccaacggcct tccgccgatc gcggccctgg
     3121 acagcatctc tctcaccagc gtgcctgaac ccgcggcctg gatgatgatg ctcttgggtt
     3181 tcggtggcct cggcgcggtt ctgcgccgcc ggcgcgccgt agccgcctga acccgcccgc
     3241 cgggctccag acgcgaaaaa ggcagtcctt tcggactgcc tctgccgctt cctttgatcc
     3301 gcgcaggacc gaagtcctgg gaagcgccgc ggggccccac gccctggcga tcgagtgacc
     3361 gaccgccgtt ggctcactgt ttgcgctcgc tgcgcccgat ggcaagggtc cgtaaccgca
     3421 cagcctgcga atggcgcggc cctgttgtgg tgacgccacg ccccgaaatg gccccattgg
     3481 gacccagcgc cggccacatc cgcacgccag ataagcactg tcggctgatc ggcatccggt
     3541 ccggatcctg aacagccccc cag
//
LOCUS       DATAJL010000535         1913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68133,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000535 DATAJL010000000
VERSION     DATAJL010000535.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68133"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VHN39_10255"
     CDS             complement(<1..297)
                     /locus_tag="VHN39_10255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor N-terminal transmembrane
                     domain-containing protein"
                     /protein_id="HEX2816769.1"
                     /translation="MALDTDTAKPERRRKPRRRPWLPGTRLGQLIIALNVLGLAILIV
                     GALVLNELRQGLVNARIDSLTTQGELMASILDQYATVGEPLPAMDPNYAAVALQA"
     gene            complement(266..976)
                     /locus_tag="VHN39_10260"
     CDS             complement(266..976)
                     /locus_tag="VHN39_10260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2816770.1"
                     /translation="MAKITLVDDDENIVTSVSLALESHGHTVKAYYDGATGLAALESE
                     PPDLAILDVKMPRMDGMEVLRRLRRTSDMPVIILTSKDEEIDEILGFNLGADDYMHKP
                     FSQRLLIERVKAVLRRAGVEGEEPPTAAAGAEGSRAIKRGKLTLDPARHDCLWEGKPV
                     KLTVTEFLLLQSLAQRPGFVKSRDNLMDAAYDDQVYVDDRTIDSHIKRMRKKFRDVDP
                     EFDAIETLYGVGYRYRET"
     gene            1150..>1913
                     /locus_tag="VHN39_10265"
     CDS             1150..>1913
                     /locus_tag="VHN39_10265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816771.1"
                     /translation="MSAADVHFEVFVRRYPDSGWALKMATDVRLTALDSAKEMIDRGE
                     VAGVRVMRETLDPATGEFHSLTILTLGVPERPRKVKAPEPTEPLCVSPQDLYTCHARE
                     RIGRLFETWLERHEATPFELLHRPDLVEQLEASGVEIAHAVQKIAVPEAHSRDVAVSE
                     MVKSFKSLGERAIERLMRDARKGLPNVSPDTFAKTASQLAKDPEGAYRLGCAVAASLA
                     PAQSWSEKVGLLLDLADNAPAEGSGRKLALSVIAQPL"
BASE COUNT          293 a          641 c          644 g          335 t
ORIGIN      
        1 cgcctggagg gccacggccg cgtagttggg atccatcgcc ggcagcggct cgccgaccgt
       61 ggcgtactgg tcaaggatcg aggccatcaa ctcgccctgg gtggtcaggc tgtcgatgcg
      121 cgcattgacc aggccctggc gaagctcgtt cagcaccagg gcgccgacga tcaggatcgc
      181 caagcccagc acgttcaacg cgatgatcag ctggccaagg cgggtgcccg gcagccaagg
      241 acgtcgccgg ggcttgcgcc gccgctcagg tttcgcggta tcggtatcca acgccataga
      301 gggtttcgat cgcgtcgaac tcggggtcca cgtctctgaa cttcttgcgc atgcgcttga
      361 tgtggctgtc gatggtgcgg tcgtcgacat agacctgatc gtcgtaggcc gcgtccatca
      421 ggttgtcgcg gctcttcacg aagcctggcc gctgggccag cgactgcagc agcaggaatt
      481 cggtcaccgt cagcttcacg ggcttgcctt cccacaggca gtcgtggcgc gccggatcca
      541 gcgtcagctt gccccgtttg atggcgcggc tgccctcggc gccggctgcg gcggtcggag
      601 gctcctcacc ctcgacgcca gccctgcgca gcaccgcctt cacccgctcg atcaagaggc
      661 gctggctgaa gggtttgtgc atgtagtcgt cggcgcccag gttgaagccc aggatctcgt
      721 cgatctcctc gtccttggag gtgaggatga tcaccggcat gtcggaggtc cggcgcaggc
      781 gccgcagcac ctccatcccg tccatgcgcg gcatcttcac atcgaggatg gccaggtcag
      841 gcggctcgct ctccagggcc gccaggcccg tggcgccgtc gtaataggcc ttcacggtgt
      901 ggccgtggct ttccagcgcg aggctgaccg aggtgacgat gttctcgtcg tcatccacca
      961 gggtgatctt ggccattggg ggtgcgtcgt ctccgtaagt cgtcgttgtg aagctagtca
     1021 tcccgcaccg tggcctcaat ggggcgcctt tggggggcgt cttcggggcg caggcgaggg
     1081 cgcgataacg gcgatcaatc tgagcttaaa gcttcggcgc tagggtccgg ttcattgggg
     1141 agggactcta tgtccgctgc tgacgtccat ttcgaggttt ttgtccgccg ttacccggac
     1201 tcgggctggg ccctgaagat ggccacagac gtacgcctga ccgcgctcga ttccgccaag
     1261 gaaatgatcg accggggcga ggtggccggc gtccgcgtca tgcgcgagac cctggatccg
     1321 gccaccggcg agttccactc cctgaccatc ctgacgctgg gcgtgccgga gcggccgcgc
     1381 aaggtgaagg cgccggagcc caccgagccg ctctgcgtct cgccgcagga cctctacacc
     1441 tgccatgccc gcgagcggat cggccggctc ttcgagacct ggctggagcg ccacgaggcc
     1501 acccccttcg aacttctgca ccgaccggac cttgtcgagc agctggaggc gagcggcgtg
     1561 gagatcgccc acgcggtcca gaagatcgcc gtgcccgagg cccattcgcg ggacgtcgcg
     1621 gtctccgaga tggtcaagtc cttcaaaagc ctcggggaac gggccatcga gcggctgatg
     1681 cgggatgcgc gcaagggcct gccgaacgtc tcccccgaca ccttcgccaa gaccgccagc
     1741 caactcgcca aggaccccga aggcgcctac cgcctgggct gcgcggtggc tgccagcctc
     1801 gccccggcgc agagctggag cgaaaaggtt ggcctgctgc tggacctggc cgacaacgcg
     1861 ccggccgagg gctcgggccg caagctggcg ctctcggtca tcgcccagcc gct
//
LOCUS       DATAJL010000536         1623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59229,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000536 DATAJL010000000
VERSION     DATAJL010000536.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59229"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VHN39_10270"
     CDS             <1..218
                     /locus_tag="VHN39_10270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816772.1"
                     /translation="DYTLVGVAHVGSRSEAVFRGASGEVVSLRLGEALLGWRLADVEP
                     GGIVLQQGDVARTIRVASPAAPKTAER"
     gene            215..>1623
                     /locus_tag="VHN39_10275"
     CDS             215..>1623
                     /locus_tag="VHN39_10275"
                     /inference="COORDINATES: protein motif:HMM:NF015891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretin N-terminal domain-containing protein"
                     /protein_id="HEX2816773.1"
                     /translation="MSARKLSAAACATALILSGCMEDGHPAPPRRLTPRPATAPPPAT
                     PVDPAVRTTIVPGITQPAPPIGQPVTRLRSGDVSLNFPGADVQVVAKAVLGDLLGLPF
                     TIPPQIHTPVTVVTQRPTARADVFRLFEAALATADLAVAQRDGVYAILPIEQARGQAP
                     LVEGPTQGFATEVIHLNFVSAEELRRLLDPILPNVITQADVARNTIAVSGTSGQRATI
                     RDLVRQFDVDWLRNTSFALFVPQRTDSRLIVPELDKLINANGAPTRGLVRLIAMDRLN
                     GILAVSTQRQYLDDVRRWVEVLDREGQSSERRIYVYRVQNGRSADLARVLANAFGGRG
                     SGSATLFDAARDSRLNAQAGPPRDDLGSPRVETPAPAGPFGTPVTPGTSSAGVTMNAP
                     ANPNNLSTGGPASVDIQTDDLRAKISSDEANNAIVVYATPRDYAVVEDALRKLDVAPN
                     QVMIEAAIVEVTLNDEMQYG"
BASE COUNT          244 a          587 c          547 g          245 t
ORIGIN      
        1 gcgattacac actggttggc gtcgcccatg tcgggagccg gagcgaagcg gtgttccgcg
       61 gggcctcggg cgaagtggtg agtctgcgcc tgggcgaggc gttgctgggc tggcggctcg
      121 ccgacgtgga gccgggcgga atcgtgctgc aacagggcga cgtggcgcgc acgatccggg
      181 tggcctcgcc cgccgcgccg aagacagccg agcgatgagc gcgcgcaagc tgtcagctgc
      241 agcctgcgcg acagccctca ttctcagcgg gtgcatggaa gacggccatc cggcgccgcc
      301 tcggcggctg acgccgcggc ccgccacggc gcccccgccg gccacgccgg tcgaccctgc
      361 ggtgcgaacg accatcgtcc ccgggattac gcagcccgcc cctccgatcg gccagccggt
      421 gacccggctg cgctccggtg acgtcagcct caacttccca ggcgctgacg tgcaggtggt
      481 cgccaaggcg gtgcttggcg acctgctcgg ccttccattc accattccgc cgcagatcca
      541 tacgccggtc accgttgtca cccagcggcc caccgcccgg gcggacgtgt ttcggctctt
      601 cgaggccgcg ctggccacgg cggacctggc ggtggcgcag cgtgacggcg tctatgcgat
      661 tctgccgatc gaacaggcgc gcggccaggc gccgctggtc gagggcccga cgcaggggtt
      721 cgccaccgag gtcatccacc tgaacttcgt cagcgccgag gaattgcggc ggctgctcga
      781 tcccatcctg cccaatgtga tcactcaggc cgatgtggcc cgcaacacta tcgcggtgtc
      841 ggggacctcc ggccagcgcg ccaccatccg cgacctggtg cggcagttcg acgtggactg
      901 gctgcgcaac acctccttcg ccctgttcgt gccacagcgc acggacagcc ggctgatcgt
      961 tcccgaactc gacaagctga tcaacgcgaa tggcgcgccg acccgcggct tggtccgcct
     1021 gatcgccatg gatcggctga acggcatcct ggctgtatcg acccagcggc agtacctcga
     1081 cgacgtccgc cggtgggtgg aggtcctgga ccgcgagggc cagtcgagcg agcggcggat
     1141 ctatgtctat cgggttcaga atggacgctc ggccgacctg gcgcgggtgc tggccaacgc
     1201 cttcggcggt cgcggctcgg ggtcggccac cctgttcgat gcggcgcgcg acagccggct
     1261 gaacgcccag gccggtcccc ctcgcgatga tctcggctcg cctcgcgtcg agacgcctgc
     1321 gcccgctggc cccttcggta cgcccgtcac gccggggacg tcctccgccg gcgtcaccat
     1381 gaatgccccg gccaacccca acaacctgtc caccggcgga cccgccagcg tcgacatcca
     1441 gaccgatgat ctgcgcgcga agatcagcag cgacgaggcc aacaacgcca tcgtcgtcta
     1501 cgccaccccg cgggactatg cggtggtcga ggatgctctt cgcaagctgg acgtcgcgcc
     1561 caaccaggtg atgatcgagg ccgcgatcgt cgaggtcacc ctgaacgacg aaatgcagta
     1621 cgg
//
LOCUS       DATAJL010000537         3336 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_22045,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000537 DATAJL010000000
VERSION     DATAJL010000537.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22045"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VHN39_10280"
     CDS             complement(<1..534)
                     /locus_tag="VHN39_10280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816774.1"
                     /translation="MRKILLGAVASLGLLAAASSTYAGVTSGSVWIGDFSSDASVIPA
                     GPATATFTTSAINYDSDVGGYTIGGFVNDPTGVHFSNAAVAGDDLNDTHFQFVGTLGL
                     LSGNNVFDVIHDDGLILNIAGFGLVVNQPGPTSAVDTPFNVFNPGAAGNFAFQLDYNE
                     TFGPPAVLIMRVNDVVVT"
     gene            complement(647..2491)
                     /gene="recQ"
                     /locus_tag="VHN39_10285"
     CDS             complement(647..2491)
                     /gene="recQ"
                     /locus_tag="VHN39_10285"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HEX2816775.1"
                     /translation="MQSAVAEPEIDPLSEAREILRRTFGHPEFRGMQADVISVVLAGR
                     SAMAVLPTGGGKSVCYQIPSLIRPGLGLVVSPLIALMADQVAGLQQSGVAAARLDSNI
                     DPEEKAETWRRIEAGELDILYTSPEGLMQPWMLERLGRIPLALIAIDEAHCVSQWGHD
                     FRPEYRMLGRLADLFPNVPRLAVTATADARTREDIRNELRLADSPEFVDSFARPELVL
                     SAERKRGAGHKRVVDLVTARPDRSGVVYAGSRDGVDKLAQALRDAGVPALAYHAGLDR
                     HVRTERLEQFLQADAAVMVATIAFGMGVDKPDVRFVIHADPPASIEAYWQEIGRAGRD
                     GDLAEGITLYGAADMSWALRRIGERDMEATVKQVQVGKVRQLYALLDGTGCRAATVRR
                     YFGEEGVEACGQCDLCTGQVDLTDATESAQKALSAAHRLAGRYGRGRLVDHLLGKTKD
                     VSDHETSLSTWGIGQELSANAWRDLVEQLLFEGLLREDPNDGRPLVGLGEAEAVRAVF
                     RGERRVMVQTRTEAPAKARRARKGREALATAPSDQPLFEALRAWRSAEAKSQHVPPYV
                     IFHDRTLTEIASARPGSPAALGNVNGVGEGKLARYGSAVLEVVRAFSG"
     gene            complement(2541..3005)
                     /locus_tag="VHN39_10290"
     CDS             complement(2541..3005)
                     /locus_tag="VHN39_10290"
                     /inference="COORDINATES: protein motif:HMM:NF016807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BLUF domain-containing protein"
                     /protein_id="HEX2816776.1"
                     /translation="MSETSGRRTLHRLIYASRQEIAPADLDEEVGQIIRSAIRRNREA
                     SVSGLLLIHEGYFLQALEGSSEAVLTTYGRICDDPRHSDVRIIEAGPAAAREFADWNM
                     CARRMTPADDAILDTLSQRARFEPRRLSGPSALRLLMTVRGIQHRTQLAAMG"
     gene            complement(3071..>3336)
                     /locus_tag="VHN39_10295"
     CDS             complement(3071..>3336)
                     /locus_tag="VHN39_10295"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEX2816777.1"
                     /translation="WMQDQAEGGAYSVLMDFQPGDMQFINNYHVLHGRGAYEDDRAAG
                     KVRHLKRLWLETEVLADRPSVFTNRMGGHWAKKASISRMDAAT"
BASE COUNT          508 a         1149 c         1153 g          526 t
ORIGIN      
        1 ggtgaccacc acgtcgttga ccctcatgat cagcaccgca ggcgggccaa aggtctcgtt
       61 gtagtcgagc tggaaggcga agtttccggc cgcgcccgga ttgaacacat tgaacggtgt
      121 gtccacggct gaggtcgggc ccggctggtt caccaccagg ccgaagcccg caatgttcag
      181 gatcaggccg tcgtcatgga tcacgtcgaa gacgttgttc ccgctcaaca gacccaatgt
      241 gccaacgaat tggaagtggg tgtcgttgag gtcatccccg gcgacggcgg cgttcgagaa
      301 gtggacgccc gtcggatcat tcacgaagcc gccgatggta tagccaccta cgtcgctgtc
      361 gtagttgatg gcgcttgtgg tgaacgtggc ggtcgcagga cccgccggaa tcaccgacgc
      421 gtcgctcgag aaatcgccga tccacaccga gccggacgtc acgcccgcgt atgtcgagct
      481 ggcggccgcc agaaggccta atgaggccac tgcgccgaga agaattttac gcatgagaca
      541 tccccactaa cgagatcgcc cgagattggg ccgagcttca gtggttaagg aatagttaag
      601 ctagggccga gtcaaacgga ctcgcctaac aggcgattcg agggacctag ccgctgaacg
      661 cccgcacgac ctccagcacg gcggagccat agcgggcgag cttgccttcg ccgacgccgt
      721 tgacgttccc cagcgccgcg gggctgccgg gcctggcgct ggcgatttcg gtgagcgtgc
      781 ggtcgtggaa gatgacgtag ggcggcacgt gctggctctt ggcctcggcc gagcgccagg
      841 cgcgcagggc ctcgaacagc ggctggtcgg acggcgccgt cgccagggct tcgcgcccct
      901 tgcgcgcgcg gcgggccttg gccggcgcct ccgtgcgggt ctggaccatc acccggcgct
      961 cgccgcggaa gaccgcgcgg acggcctcgg cctcgcccag gcccaccagc gggcggccat
     1021 cgttggggtc ctcgcgcagc aggccctcga acagcagctg ttccaccagg tcgcgccagg
     1081 cgttggccga cagctcctgg ccgatgcccc aggtggagag cgaggtctcg tggtcggaga
     1141 catccttggt cttgccgagc agatggtcga ccagccgccc gcggccgtag cggccggcca
     1201 gccggtgggc ggccgagagc gccttctggg ccgactccgt ggcgtcggtc aggtccacct
     1261 ggccggtgca gaggtcgcac tggccgcagg cctcgacgcc ctcctcgccg aagtagcggc
     1321 gcacggtggc cgcgcggcag ccggtcccgt cgagcagggc gtagagctgg cggaccttgc
     1381 ccacctgcac ctgcttgacc gtggcctcca tgtcccgctc gccgatgcgc cgcagcgccc
     1441 agctcatgtc ggccgcccca tagagggtga tgccctcggc caggtcgccg tcgcggccgg
     1501 cgcggccgat ctcctgccag taggcctcga tggaggccgg cggatcggcg tggatcacga
     1561 agcggacgtc gggcttgtcg acccccatac cgaaggcgat ggtcgccacc atcaccgccg
     1621 cgtccgcctg caggaactgc tccagccgct cggtccgcac gtgccggtcg aggccggcgt
     1681 gataggccag cgccgggacg cccgcgtcgc gcagcgcctg ggcgagcttg tccaccccgt
     1741 cgcgggaccc ggcatagacc acgcccgacc ggtcgggccg ggcagtgacc agatcgacca
     1801 cccgcttgtg gcccgcgccg cgcttgcgct cggccgacag caccagctcg ggccgcgcga
     1861 agctgtccac gaactccggc gaatccgcca ggcggagttc gttgcggatg tcctcgcggg
     1921 tccgggcgtc ggcggtggcg gtgaccgcca gacgcggcac gttcgggaag aggtcggcga
     1981 ggcgccccag catccggtac tcgggcctga agtcgtggcc ccactggctg acgcagtggg
     2041 cctcgtcgat ggcgatcagc gccagcggaa tacggcccag ccgctccagc atccagggct
     2101 gcattagacc ctcgggcgag gtgtagagga tgtcgagttc gcccgcctcg atgcgccgcc
     2161 aggtctcggc tttctcctcc gggtcgatgt tggaatcgag ccgcgcggcg gccacgcccg
     2221 actgctgcag tcccgccacc tggtcggcca tcagcgcgat cagcggcgag accaccagcc
     2281 ccagcccggg ccggatcagg ctcgggatct gatagcagac gctcttgccg cctccggtcg
     2341 gcagcaccgc catggcgctg cgccccgcca ggaccacgct gatgacgtca gcctgcatcc
     2401 cgcggaactc cgggtggccg aaggtccgcc gcaggatctc gcgggcttcc gaaagcggat
     2461 cgatctcggg ctcggcgaca gcggactgca tcagcgcctt atggggccga ctcgcctcac
     2521 ccgctaggtg gtgtttggcc tcaacccatc gcggcgagct gggtgcgatg ctggatgccg
     2581 cgcaccgtca tcagcagccg cagcgccgac ggtccagaga gccggcgggg ttcgaaccgc
     2641 gctctttggg acagagtatc gaggatcgca tcgtccgccg gcgtcatgcg gcgggcgcac
     2701 atgttccagt cggcgaactc ccgggcggcg gccgggcccg cttcgatgat cctgacgtca
     2761 ctgtggcgcg ggtcgtcgca gatgcggccg taggtggtga ggacagcctc cgaggagccc
     2821 tccagcgcct gcaggaagta gccctcatgg atcagcagca ggccggagac cgaagcttcg
     2881 cggttacggc gaatggcgga gcggatgatc tggcccacct cctcgtcgag gtcggctggg
     2941 gcgatctcct ggcggctggc atagatcagg cggtgcagcg tgcggcggcc ggaagtctcg
     3001 ctcatgctcg gtccctcttt cgaggatcac tgcgccggcg aaacctgtgc tcccgctaac
     3061 ggggcctgcg tcaggttgcc gcgtccatcc ggctgatgct ggccttcttc gcccaatgcc
     3121 cgcccatccg gttggtgaag acgcttggcc gatccgccag gacctcggtc tccagccaca
     3181 ggcgtttcag atgccgcacc ttgcccgccg cgcggtcgtc ctcgtaggcg cctcggccgt
     3241 ggagcacgtg gtagttgttg atgaactgca tgtcgccggg ctggaaatcc atcagcacgg
     3301 aataagcgcc gccctccgcc tggtcctgca tccagg
//
LOCUS       DATAJL010000538         3277 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68146,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000538 DATAJL010000000
VERSION     DATAJL010000538.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3277)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3277)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3277
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68146"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..679
                     /locus_tag="VHN39_10300"
     CDS             89..679
                     /locus_tag="VHN39_10300"
                     /inference="COORDINATES: protein motif:HMM:NF025069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HEX2816778.1"
                     /translation="MALLNRLSEMPPRRGPANRRRCALGVGLAVLSLCASASARADPP
                     LELAVKATYLYKLAPFVSWPSAAWSAPDAPLVICVQGTDPFGPVLDRATAGQAVDSHP
                     VVVRRLARLDPAAGCQIAYVAGGAAQSQAQALQAVAGAPVLTVTDDTQHSAAKGIVNL
                     LLEAGRVRFSIDAGQADRNGVAISSKLLALAVAVKR"
     gene            676..2448
                     /locus_tag="VHN39_10305"
     CDS             676..2448
                     /locus_tag="VHN39_10305"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2816779.1"
                     /translation="MSRSTDALPDRRLADRRLVDVAWLSVVAILAIGALLATRAEINF
                     RSQAARQAEVQADILAASVSAALAFDDRTVMLEYLDALRVNRAVAAAAVYDASGRAVV
                     AFHRSQAAAPLGRMVALGTVFTNRHVTVTRPVAEHGQRLGAVYLETLPESWASILGRH
                     SALALLTILAFLLLGVVTAAASQLQVRARLLAEANARLVEEMAARGKAEEALRQSQKM
                     EALGQLTGGIAHDFNNLLQVVHGAFELIRRKPDDVAKVAAWSDNGIAAAERGASLTRQ
                     LLAFSRSQKLELRPFVVAGLIEDMRDLLVRTLGPDVTLAIQLDEAHAAVMSDRTQLEL
                     AVLNLAINARDAMPEGGRLTISTTLRHIADGDPVLEGGDYVDLSVADTGEGMSPAVME
                     RAFDPFFTTKGVGKGTGLGLSQVYGVARQAGGTAQITNGPGGGTVVTLLLRRSTAPAP
                     DAAARDEPLVILAPEAGCTVLVVDDEAAVRALAGEILELLGYRVLEASSGAMAMEMLQ
                     TVKPDLMLFDYAMPVMNGAELAKLARLRWPDVPIVFASGYADTAQVEAALGGEAIILR
                     KPFNMETLAQTIAGLLQGAHGAGR"
     gene            2543..2968
                     /locus_tag="VHN39_10310"
     CDS             2543..2968
                     /locus_tag="VHN39_10310"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX2816780.1"
                     /translation="MPETQDDAELMTAPAAGLHDLVVRADARGVILYVSETCRGLGYE
                     PHELVGRSGAEFVHKADLPQFAANTSRLIGAGTVDEGVNREFRYRRKDGTWAWLQGHP
                     TILPARDGRLGDILNVFCDVTERRTMREALREQVRQARG"
     gene            3087..>3277
                     /locus_tag="VHN39_10315"
     CDS             3087..>3277
                     /locus_tag="VHN39_10315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816781.1"
                     /translation="MSDTLDRCEEPEASERLKPARADDASNRDVTWDVLSEKINDLIV
                     LADVTGTIFYASPACKHLG"
BASE COUNT          490 a         1104 c         1203 g          480 t
ORIGIN      
        1 cggtgtcggg ccgcaatctg ttgcacgcgc ggcatgtgga gtaccccggc ggcgacgcca
       61 tccaacgcac cgtctccgcc gacctgcaat ggcgcttctg aaccggctga gcgagatgcc
      121 gccgcgccgc ggtccggcga accggcgccg ctgcgccctg ggcgttggtc tggcggtcct
      181 gagcctctgc gcctcggcct cggcgcgggc cgatccgccg ctcgaactgg ccgtcaaggc
      241 cacctatctc tacaagctcg cgcccttcgt gagctggccc agcgcggcgt ggagcgctcc
      301 ggacgcgccc ctggtgatct gcgtgcaggg gaccgacccc tttggcccgg tgctcgaccg
      361 ggccacggcg ggccaggcgg tggattcgca tccggtggtg gtgcgccgcc tcgcgcgcct
      421 cgaccccgcc gccggctgcc agatcgccta tgtggcgggc ggcgcggccc agtcgcaggc
      481 ccaggccctg caggcggtgg ccggcgcccc ggtgctgacg gtgaccgacg acacccagca
      541 ttcggccgcc aaggggatcg tcaacctgct cctggaagcc ggcagggtgc ggttcagcat
      601 cgacgctggc caagccgatc ggaacggcgt ggcgatcagc tccaagctcc tggcgctggc
      661 cgtggcggtg aagcgatgag ccggtccacc gacgccctgc cagacagaag attggccgac
      721 cggagactgg tcgatgtcgc ctggctgagc gtggtggcga tcctggcgat cggcgcgctc
      781 ctggccaccc gtgcggagat caacttccgc agccaggcgg cgcgtcaggc cgaggtgcag
      841 gccgacatcc tggccgccag cgtcagcgcg gcgctggcct tcgacgaccg cacggtcatg
      901 ctggagtatc tcgacgcgct tcgggtcaac cgcgcggtag cggccgcggc ggtctatgac
      961 gcctccggtc gcgcggtggt cgcgttccac cgcagccagg ccgcggcgcc gctgggccgg
     1021 atggtcgcgc tggggacggt gttcacgaac cggcacgtga cggtgacccg gccggtggcc
     1081 gagcatggcc agcggctggg ggcggtctat ctggagaccc tgccggaaag ctgggcctcg
     1141 atcctgggcc ggcactcggc gctggcgctc ctcaccatcc tggccttcct gctgctgggc
     1201 gtggtgaccg cggcggcctc gcagctgcag gtccgagcac gcctgttggc ggaggccaac
     1261 gcgcggctgg tcgaggaaat ggcggcgcgc ggcaaggccg aggaggctct gcggcagagt
     1321 cagaagatgg aggcgctggg ccagctcacg ggcggcatcg cgcacgattt caacaacctc
     1381 ctgcaggtgg tgcacggggc cttcgagctg atccggcgca agcccgacga tgtcgccaag
     1441 gtcgcggcct ggtccgacaa cggcatcgcc gcggccgagc ggggcgcgag cctgacgcgg
     1501 cagctgctgg ccttctcgcg cagccagaag ctggaactgc ggcctttcgt ggtcgccggg
     1561 ctgatcgagg acatgcgcga cctgctggtc cgcacgctgg gtccagacgt cacgctggcg
     1621 atccagctcg acgaggccca cgccgcggtg atgagtgacc gcacccagct ggagctggcg
     1681 gtgctgaacc tggcgatcaa cgcccgcgac gccatgccgg agggcggacg gctgaccatc
     1741 tccacgacgc tgcgccacat cgccgacggc gatccggtgc tggagggcgg cgactatgtc
     1801 gacctgagcg tcgccgacac cggcgagggc atgtcgccag cggtgatgga acgggccttc
     1861 gatccgttct tcaccaccaa gggcgtcggc aagggcacgg ggctgggtct gagccaggtc
     1921 tatggggtgg cgcgccaggc cggcgggacg gcgcagatca ccaatggccc gggcggcggg
     1981 acggtggtga ccctgttgct gcgacgctcg acggcgccgg cgccggacgc cgcggcgcgt
     2041 gacgaaccgc tcgtcatcct ggcgccggaa gccgggtgca cggtcctggt ggtggacgac
     2101 gaggccgccg tcagggcgct ggccggcgag atcctggagc tcttgggcta tcgggtgctg
     2161 gaggcctcct ccggcgccat ggcgatggag atgctgcaga ccgtcaagcc ggacctgatg
     2221 ctgttcgact acgccatgcc ggtgatgaac ggggcggagc tggccaagct ggcgcggctg
     2281 cgctggccgg acgtgccgat cgtcttcgcc agcggctacg ccgacaccgc ccaggtggag
     2341 gccgcgctgg gcggcgaagc gatcatactg cgcaagccgt tcaacatgga gaccctggcc
     2401 cagaccatcg cgggcctgct gcagggcgcg catggggcgg gacgctaggg cggcggttgg
     2461 ccgcaggccc gttcatcacc cgccaaccga caggtggtag tgcgggccgc cggagaggct
     2521 gagctccggc cgaggaggct aggtgccgga aacccaagac gatgccgaac tgatgaccgc
     2581 gcccgcagcg ggcctgcatg acttggtcgt gcgcgccgac gcgcggggcg tcatcctcta
     2641 tgtgtctgag acctgccgcg gcctgggcta cgaaccgcac gagcttgtcg gccgctcggg
     2701 cgcggagttc gtgcacaagg ccgacctgcc ccagttcgcc gccaacacct cgcgactgat
     2761 cggcgccggg acggtcgacg agggggtgaa ccgcgaattt cgctaccgcc gcaaggacgg
     2821 gacgtgggcc tggctacagg ggcatccgac gatcctgccg gcgcgtgacg gacggctagg
     2881 cgacattctc aatgtgtttt gcgacgtgac cgagcggcga acgatgcgcg aagccctgcg
     2941 cgagcaggtt cgccaggcgc gcggctgaac ctccgtggcg gcgctcgccc gaccgatccg
     3001 cggcgccaaa ccgcatcatc gttaatctcg acgtaaggcg agcggcgcaa gtatctgaat
     3061 tgccgaatga attatatagg cctcttatgt cggacacgct cgatcgatgc gaggaacctg
     3121 aggcttcgga acgcctgaag ccggcgcggg ccgacgacgc gtcgaaccgc gacgtcacct
     3181 gggatgtgct gtcggaaaag atcaacgatc tgatcgtgct ggccgacgtg acgggcacga
     3241 tcttctacgc ctcaccggcc tgcaagcacc tcggcta
//
LOCUS       DATAJL010000539         2109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_22070,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000539 DATAJL010000000
VERSION     DATAJL010000539.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22070"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2109)
                     /gene="carB"
                     /locus_tag="VHN39_10320"
     CDS             complement(<1..>2109)
                     /gene="carB"
                     /locus_tag="VHN39_10320"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEX2816782.1"
                     /translation="VTKVPRWAFEKLPGADGRLGTRMQSVGEVMAIGRTFAESLQKAL
                     RGLETGLSGLDEVEIENAGNPEMGHAAVLRALGQPTPDRLRVIAQAFRHGLSVEDIHA
                     ACSYEPWFLRQIQTLVAEEARVRFEGLPTTAQGFRALKAQGFSDARLAALVGSTEARV
                     RDDRRTLGVRPVFKRIDTCAGEFRADTPYMYSTYETGSLGQEPECESDPSDRKKAIIL
                     GGGPNRIGQGIEFDYCCCHAAFALAEIGVESIMVNCNPETVSTDYDTSDRLYFEPLTA
                     EDVLELIHVEQSKGTLLGVIVQFGGQTPLKLAQPLADSGIPILGTTPDAIDLAEDRER
                     FQQLLHKLKIQQPINAIARSRDEAFAGAHQVGYPVVIRPSYVLGGRAMEIVRDDEQLE
                     RYITNAVKVSGDSPVLIDQYLSRATEVDVDALCDADGEVYVAGVMEHIEEAGVHSGDS
                     ACSLPPFSLKPETIAELKVQTTAMARALEVRGLMNVQFAIEEPHSDEPRIFVLEVNPR
                     ASRTVPFVAKTIGRPLAAIAAKVMAGMKLSEFDLTETPYDHIAVKEAVFPFARFPGVD
                     TVLGPEMRSTGEVMGLDWVRPGETLAPAFARAFAKSQLGGGTVLPKSGSVFVSVKDAD
                     KPWVLEPVRLLQGLGFKVLATGGTATYLEGEGLKVEHVKKVLEGRPHIVDAMKNGEVQ
                     LVFNTTEGRQSLADSFELRRT"
BASE COUNT          315 a          719 c          724 g          351 t
ORIGIN      
        1 gtgcggcgca gttcgaagct gtcggccaac gattggcgcc cctcagtggt gttgaacacc
       61 agctggacct cgccgttctt catggcgtcg acgatgtgcg gccggccttc cagcaccttc
      121 ttgacgtgct cgaccttcaa gccctcgcct tcgaggtagg tcgcggtgcc gcccgtggcc
      181 agcaccttga agcccaggcc ctgcagcagc cggaccggct ccagcaccca gggtttgtca
      241 gcgtccttca ccgagacgaa caccgagccg gatttcggca gcaccgtgcc gccgccgagc
      301 tggctcttgg cgaaggcccg cgcgaaggcg ggcgccaggg tctcaccggg acgcacccag
      361 tccaggccca taacctcgcc ggtcgaccgc atctccgggc ccagcacggt gtcgacgccg
      421 gggaagcggg cgaaggggaa caccgcctcc ttcaccgcga tgtggtcgta gggggtctcg
      481 gtcaggtcga actctgagag cttcatgccg gccatcacct tggcggcgat cgcggccagt
      541 ggccggccga tagtcttggc cacgaaaggc accgtgcggc tggcgcgcgg gttcacctcc
      601 aggacgaaga tgcggggctc gtcggagtgc ggttcctcga tggcgaactg cacgttcatc
      661 aggccgcgca cctcgagcgc ccgggccatg gccgtggtct ggaccttcag ttcggcgatg
      721 gtctcgggct tgagcgaaaa cggcggcagg gaacaggcgc tgtcgcccga gtgcaccccg
      781 gcctcctcga tgtgctccat gaccccggcc acatagacct cgccgtcggc gtcgcagagc
      841 gcgtccacgt ccacctcggt ggcgcggctg aggtactgat cgatgaggac aggcgagtcc
      901 ccgctcacct tcacggcatt ggtgatgtag cgctccagtt gctcgtcatc gcggacgatc
      961 tccatggccc ggccgcccag gacgtaagag ggccggatca ccaccgggta gcccacctga
     1021 tgggcgccgg cgaaggcctc gtcgcggctc cgggcgatgg cgttgatcgg ctgctggatc
     1081 ttcagcttgt gcagcagctg ctggaaccgt tcgcggtcct cggccaggtc gatggcgtcg
     1141 ggcgtggtgc cgaggatcgg gatgccggag tcggccagcg gctgggcgag cttcagcggc
     1201 gtctggccgc cgaactggac gatgacgccg aggagggtcc ctttcgactg ctccacatgg
     1261 atcagttcga ggacgtcttc tgcagtcagc ggttcgaagt acagccggtc cgacgtgtcg
     1321 tagtccgtcg aaacggtctc gggattgcaa ttcaccatga tcgactccac gccgatctcg
     1381 gccagcgcga aggccgcgtg gcagcagcag tagtcgaact cgatcccctg gccgatccgg
     1441 ttgggcccgc cgcccaggat gatcgccttc ttccgatccg aggggtcgct ctcgcactcc
     1501 ggctcctggc cgagcgagcc ggtctcgtag gtcgaataca tatagggcgt gtcggccctg
     1561 aactcgccgg cgcaggtgtc gatgcgcttg aagaccggcc tgacgcccag cgtgcgccgg
     1621 tcgtcccgga cgcgggcctc ggttgagccc acgagcgccg ccaggcgggc gtcggagaag
     1681 ccctgggcct tcagcgcccg gaagccctgg gcggtggtgg gcaggccttc gaagcgcacc
     1741 cgcgcttcct cggccaccag ggtctggatt tggcgcagga accagggctc gtaggaacag
     1801 gccgcatgga tgtcctcgac gctgaggccg tggcggaagg cctgggctat gaccctcagg
     1861 cgatccggcg tcggctggcc cagcgcgcgc agcaccgcgg cgtggcccat ctccggattg
     1921 ccggcgttct cgatctccac ctcgtcgagg ccggagaggc cggtctccag gccgcgcaag
     1981 gccttctgca ggctctcggc gaaggtgcgg ccgatggcca tgacctcgcc caccgactgc
     2041 atgcgcgtgc ccaaccggcc gtcggccccg ggcagtttct cgaaggccca gcgcggcacc
     2101 ttggtcacc
//
LOCUS       DATAJL010000540         4550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68162,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000540 DATAJL010000000
VERSION     DATAJL010000540.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4550
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68162"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..1003
                     /locus_tag="VHN39_10325"
     CDS             125..1003
                     /locus_tag="VHN39_10325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2816783.1"
                     /translation="MSLSGKTLFVTGASRGIGLAIALRAARDGANVAIAAKTAEAHPK
                     LPGTIYTAAEEIEKAGGKALPLIVDVRDEASVMAAVEATVARFGGIDICVNNASAISL
                     TGTLATDMKRYDLMNQVNARGTFLTSKACIPHLKRSANPHVLMLSPPLDMSAKWFAGH
                     TAYSMAKFGMSMCVLGMSAEFAADGIAFNALWPRTGIATAAIRFALAGDEGMRRCRTV
                     EIMADAAHAIFEKPAKSFTGNFLIDDSFLYDEGVRDFDQYKVDPTQPLMPDFFVPDSS
                     KPPPGVVIGGGTPSPA"
     gene            1000..1497
                     /locus_tag="VHN39_10330"
     CDS             1000..1497
                     /locus_tag="VHN39_10330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2816784.1"
                     /translation="MKAATAISAQVRVASPADTPLILEFIRDLAEYERLAHEVEASEA
                     DIRRDLFGENPRCFCDIAEVGGQPVGFALWFYSYSTFRGRAGIYLEDLFVKPEARGSG
                     AGKALLRRLAQRCVEADLGRLEWSVLDWNAPSIAFYDSLGAMTKEGWTVRRLYGEALS
                     QLAES"
     gene            1494..2090
                     /locus_tag="VHN39_10335"
     CDS             1494..2090
                     /locus_tag="VHN39_10335"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX2816785.1"
                     /translation="MSAPPKTVLTASAEEEATIRAAVRAAPGRTVAGPEHVDGLLALL
                     ADPRVSDPIYDLPRPITRASVAQWVADSEALRQEGRCVLAVNLDEAGAVAGYSRFTVW
                     PERASGELAGARRADLQNSGQGTQGVAHSVAWMFEDLHLRLIGLTAALDNVRSAKAID
                     GAGFKRMGEVESVKPDGTVRRSLYWELTRDAWRLRHRL"
     gene            complement(2246..3178)
                     /locus_tag="VHN39_10340"
     CDS             complement(2246..3178)
                     /locus_tag="VHN39_10340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2816786.1"
                     /translation="MGALDGKVVLVTGGGNGIGRDCALIAAQEGAKVVVNDLGAGLKG
                     DDEGSAGPAEKVCEEIRAAGGEAVSNSESVTSLKSVEGMVEQARDTFGGLHAVINPAG
                     ILRDVMFHKMSERDWDQVIEVHMRGSFNVARATIELFREQNDGAYMFFTSTSGLFGNI
                     GQANYGAAKMGIAGLSRIIAMEGARNNVRANCLAPVAWTRMTQSVPIKDEAAAARRAV
                     MAEKVRADQPARFSVAMIAPAASSVSGQIFGASGENIILYSQPRPIETCSKPEGEGWT
                     VDSIIKEAIPKMAPKFFDLNRAPMAGAQPAKAPA"
     gene            complement(3211..4464)
                     /locus_tag="VHN39_10345"
     CDS             complement(3211..4464)
                     /locus_tag="VHN39_10345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2816787.1"
                     /translation="MAETTPVPVPSARELLKERDYLVFWISRWAGSFAAQIQSVAMGW
                     QMYAIARHSHSVKESAFLVGMIGLAAFIPVFLLTLPAGEIADRHDRKKVLLFCFAGEI
                     ATVLTLAVASWQGWASVPLLLIVGFLFGAARAFFNPASTALGPMLVSRALLPRAIAWN
                     SLAWQTASIIGPAAGGFLVAQSTSSAYFTTFGLYLVSALTIALIRKSGQPVVNPGSRW
                     TLMKEGLAYVWNQKIVFGAISLDLFAVLLGGATALLPVFARDILHIGAQGFGILRSGP
                     AIGATIVALLLAARPIHSKAGVFMFGGVAMFGLATCVFAVSRSLALSVAALAVLGGAD
                     MLSVYIRQTLVQLVTPDAMRGRVAAVSSVFIGASNELGEFESGVVARFLGPVGAALFG
                     GIGALIVTGAWAGLFPALRKADRLE"
BASE COUNT          733 a         1508 c         1620 g          689 t
ORIGIN      
        1 gtcgactggt atcaagccgc agcctaaagc cgtacgccgc aagagatctg agggacgccc
       61 atgagccttg aatctttgct cgaggtggcc gctaccaact ttccaagtga ttggagctga
      121 aacgatgtcg ctttcgggca agaccctctt cgtcaccggc gccagccgcg gcatcggcct
      181 ggccatcgcg ctccgggccg cccgcgacgg ggccaatgtg gccatcgccg ccaagaccgc
      241 cgaggcgcat cccaagctgc cggggacgat ctacaccgcc gccgaggaga tcgagaaggc
      301 gggcggcaag gcgctgccgc tgatcgtgga tgtacgcgac gaggcgtcgg tgatggcggc
      361 ggtcgaggcg acggtcgcca ggttcggcgg tatcgacatc tgtgtgaaca atgcgtcggc
      421 gatctcgctg accgggacgc tcgccaccga catgaagcgc tacgacctga tgaaccaggt
      481 gaacgcgcgc ggcacgttcc tgacgtccaa ggcctgcatc ccgcacctga agcggagcgc
      541 aaatccgcat gtgctgatgc tgtcgccgcc gctggatatg agcgccaagt ggttcgccgg
      601 gcacacggcc tactccatgg ccaagttcgg catgagcatg tgcgtgctgg ggatgagcgc
      661 cgagttcgcc gccgacggca tcgcgttcaa tgcgctctgg ccccgcaccg gcatcgccac
      721 ggcggcgatc cgcttcgcgc tggcgggcga cgagggcatg cggcggtgcc gcacggtgga
      781 gatcatggcc gatgcggcgc acgcgatctt cgagaagccg gccaagagct tcaccggcaa
      841 tttcctgatc gacgacagct tcctctacga cgagggcgtc cgcgatttcg atcagtacaa
      901 ggtcgatccc acgcagccgc tgatgccgga cttcttcgtg ccggactcgt cgaagccgcc
      961 gcccggcgtc gtgatcggcg gcgggacgcc gtcgcccgca tgaaggccgc aaccgccata
     1021 agcgcccagg tgagggtagc ttccccggcc gacacgccgc tgattctgga attcatccgc
     1081 gacctggcgg agtacgagcg gctggcgcac gaggtggagg ccagcgaggc cgacatccgc
     1141 cgcgacctgt tcggcgagaa cccgcgctgt ttctgcgaca tcgccgaggt cggcggccag
     1201 ccggtgggct tcgcgctgtg gttctacagc tactcgacgt ttcgagggcg cgcggggatc
     1261 tatcttgagg acctgttcgt gaagccggag gcccgcggca gcggcgctgg gaaggcgctg
     1321 ctgcgcaggc tcgcgcagcg ctgcgtcgag gccgatctcg ggcggctgga gtggtcggtg
     1381 ctcgactgga atgcgccctc catcgccttc tacgacagcc tgggggccat gacgaaggag
     1441 ggctggacgg tgcgccgcct ctacggcgag gcgctgagcc agctcgcgga gtcatgagcg
     1501 cgccgccgaa aaccgtgctg accgcctcag ccgaggaaga ggccacgatc cgcgccgcgg
     1561 tgcgcgcggc gcctgggcgg acggtggcgg gccccgagca tgtggacggc ctgctggctc
     1621 tgctcgccga tccgcgcgtc tccgatccga tctacgacct gccgcggccc atcacgcggg
     1681 ccagcgtggc ccagtgggtc gccgacagcg aggcgctgcg ccaggagggc cgctgcgtgc
     1741 tggcggtgaa cttggacgag gccggcgccg tggcgggcta ttcgcgcttc accgtctggc
     1801 cggaacgggc gtcgggcgaa ctggccggcg cgcgccgggc cgacctgcag aacagcggcc
     1861 aggggaccca aggcgtcgcc cactccgtcg cctggatgtt cgaggatctg cacctgcgcc
     1921 tgatcggcct gaccgcggcg ctggacaatg tccgctccgc caaggccatc gatggggccg
     1981 ggttcaagcg gatgggcgag gtcgagagcg tcaagcccga cggcacagtc cggcgctcgc
     2041 tctactggga gctgacccgg gacgcgtggc ggctgcggca caggctgtag cgctcttatc
     2101 cctcctcttt aggggaggga taggccgcgc agcggccagg gtgggggagt cgcgtccagg
     2161 cgcggagtca gcactccggc ccacacatcc ccatccgtct cggcttcgcc tcgccaccct
     2221 ctccggaacg gggagggatg atttcttacg ccggcgcctt ggccggctgg gcgcccgcca
     2281 tgggcgcgcg gttcaggtcg aagaacttcg gggccatctt ggggatggct tccttgatga
     2341 tcgagtccac cgtccagcct tcgccctcgg gcttcgagca ggtctcgatg ggccggggct
     2401 gggagtagag gatgatgttc tcacccgagg cgccgaagat ctgacccgag acgctcgagg
     2461 cggccggcgc gatcatggcc acggagaagc gggccggctg atcggcgcgg accttctcgg
     2521 ccatcaccgc gcggcgggcg gcggcggctt cgtccttgat cggcaccgac tgggtcatgc
     2581 gcgtccaggc gaccggcgcc aggcagttgg cgcgcacgtt gttgcgcgcg ccttccatgg
     2641 cgatgatccg gctgagcccg gcgatgccca tcttggccgc gccgtagttg gcctggccga
     2701 tgttgccgaa gaggccgctg gtggaggtga agaacatgta ggcgccgtcg ttctgttcgc
     2761 ggaacagctc gatggtggcg cgggccacgt tgaaggagcc gcgcatgtgg acttcgatga
     2821 cctggtccca gtcgcgctcg ctcatcttgt ggaacatcac gtcgcgaagg atgccggccg
     2881 gattgatcac ggcgtgcagg ccgccgaagg tgtcgcgggc ctgttcgacc atgccctcga
     2941 cggacttcag gctggtgacg ctttcggaat tggagaccgc ctcgccgccg gcggcgcgga
     3001 tttcctcgca gaccttttcg gccggccctg cggagccttc gtcgtcgccc ttgaggcccg
     3061 cgcccaggtc gttgaccacg accttcgcgc cctcttgcgc cgcgatcagg gcgcagtcgc
     3121 gcccgatgcc gttgccgccg cctgtaacca ggacaacctt gccgtctaat gcgcccatgg
     3181 acctatctcc ctaagattat gggccgacag ttattcgagg cggtcggcct tgcgcaaggc
     3241 gggaaacagc ccggcccagg cgccggtgac gatcagggcg ccgatcccgc cgaagagggc
     3301 cgcgccgaca gggcccagga acctcgccac cacgccgctc tcgaattcgc cgagttcgtt
     3361 ggaggccccg atgaagaccg acgagaccgc cgccacccgc ccgcgcatgg cgtccggcgt
     3421 caccagctgc acgagcgtct ggcggatata gacgctgagc atgtcggccc cgccgaggac
     3481 agcgagcgcc gccaccgaga gcgcgaggct ccgcgagacc gcgaagacgc aggtcgccag
     3541 gccgaacatc gccaccccgc cgaacatgaa gaccccggcc ttgctgtgga tcggccgggc
     3601 ggccagcagc agggccacga tggtggcgcc gatggcgggt cccgagcgca ggatgccaaa
     3661 gccctgcgcg ccgatatgca ggatgtcgcg ggcgaagacc ggcaggagcg ccgtcgcccc
     3721 gcccagcagc acggcgaaga ggtccagcga gatcgccccg aagacgatct tctggttcca
     3781 gacgtaggcc aggccttcct tcatcagcgt ccagcgggag cccggattga ccaccggctg
     3841 accgctcttg cggatcaggg cgatggtcag ggccgacacg aggtagaggc cgaaggtcgt
     3901 gaaataggct gagctggtgg actgggcgac caggaatccg ccggccgccg ggccgatgat
     3961 cgaggcggtc tgccaggcca gcgaattcca ggcgatggcg cgcggcagca gtgcgcgcga
     4021 caccagcatg ggtccgagcg ctgtgctggc cggattgaag aaggcccgcg ccgcgccgaa
     4081 caggaagccc acgatcagca gcagcgggac cgaggcccag ccctgccagg aggcgaccgc
     4141 cagggtcagc accgtggcga tctcgcccgc gaagcagaac agcagcacct tcttgcggtc
     4201 gtggcggtcg gcgatctcgc cggcggggag cgtcagcagg aacaccggga tgaaagcggc
     4261 gagcccgatc atccccacca ggaaggcgct ttccttcacg gagtggctgt ggcgggcgat
     4321 ggcgtacatc tgccagccca tggccacgct ctggatctgt gcggcgaagc tgccggccca
     4381 gcgcgaaatc cagaagacca ggtagtcgcg ctccttcagc agttcgcggg ccgagggaac
     4441 ggggacgggc gtggtctcgg ccatgtgctc gcgaacctgc cctgctcggg ggttcggggc
     4501 aacggcgacg ttggctgtgg gctcagtcca ggcagcggcg gatgaactgg
//
LOCUS       DATAJL010000541         2197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59315,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000541 DATAJL010000000
VERSION     DATAJL010000541.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59315"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..942
                     /locus_tag="VHN39_10350"
     CDS             <1..942
                     /locus_tag="VHN39_10350"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX2816788.1"
                     /translation="IQGVTASYIDILNWKISQGRSISEADDANAATVCLLGQTVVTSL
                     FGPNQDPLGATVMVKGAPMRVIGILAPRGQSGFGQDQDDVVMIPFHTAENKVIGVASP
                     QATQNVVSANYPPPPSVFGIAPRMTGYVNSIYVQAAAADQVQAAIDQVTGNLARRHHI
                     QPDQPNDFSVRNLSQIAETQASSSQTMAVLLATVASISLLVGGVGIMNILLVSVTERT
                     REIGIRMAIGARRLQVMLQFLFEAVLLSLTGGVAGILGGILVSWLISAVAHWPTQLSP
                     PAILGGFLFSAAIGIFFGFYPARKAAQLDPIEALHYE"
     gene            1054..1485
                     /locus_tag="VHN39_10355"
     CDS             1054..1485
                     /locus_tag="VHN39_10355"
                     /inference="COORDINATES: protein motif:HMM:NF037565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath C-terminal domain-containing
                     protein"
                     /protein_id="HEX2816789.1"
                     /translation="MKRPSAPVAEIPVVRQPIAGTVGDWKPVPLRRVPLFIEQSLSQG
                     LQWVVFEPNGAELWAAVRRDAEAFLLELHRQGVLKGAKPDQAFFVRCDVTTMTQNDLD
                     NGRLVVEIGIATVRPAEFVIFRIGLWTETGQDGSSPPPPPP"
     gene            complement(1496..>2197)
                     /locus_tag="VHN39_10360"
     CDS             complement(1496..>2197)
                     /locus_tag="VHN39_10360"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEX2816790.1"
                     /translation="IADANDAAQFGELETLGELTQVAWKHNVQVMIEGPGHVPMHKIK
                     ANMDKQLAVCGEAPFYTLGPLTTDVAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHL
                     GLPDRDDVKEGVITYKIAAHAADLAKGHPGAQVRDNALSKARFEFRWEDQFNLGIDPE
                     TAREYHDESLPKEAFKTAHFCSMCGPKFCSMKISQDIREDARKQNEVATGMAEMAEKF
                     RESGGEILVPVATAE"
BASE COUNT          341 a          740 c          723 g          393 t
ORIGIN      
        1 atccagggcg tcaccgcgag ctatatcgac atcctgaact ggaagatctc gcagggccgc
       61 tcgatctccg aggccgacga cgccaacgcc gccaccgtct gcctgctggg tcagacggtg
      121 gtgaccagtc tgttcggccc gaaccaggac ccgctcggcg ccacggtgat ggtcaagggc
      181 gcgcccatgc gggtgatcgg catccttgcc ccgcgcggcc agagcggctt cggccaggac
      241 caggacgacg tggtgatgat cccgttccac accgcggaga acaaggtcat cggcgtggct
      301 tcgccgcagg ccacgcagaa cgtggtcagc gccaactatc cgccgccgcc cagcgtcttc
      361 ggcatcgcgc cccggatgac cggctatgtg aattcgatct atgtgcaggc cgctgcggcc
      421 gaccaggttc aggccgccat cgaccaggtc accggcaacc tggcgcgccg ccaccacatc
      481 cagccggacc agcccaacga cttttcggtg cgcaacctca gccagatcgc cgagacccag
      541 gccagcagca gccagaccat ggcggtcctg ctggccaccg tcgcctcgat ctcgctgctg
      601 gtgggcgggg tcgggatcat gaacatcttg ctggtctcgg tgaccgagcg cacgcgggag
      661 atcggcatcc gcatggcgat cggggccagg cgattgcagg tcatgctgca gttcctgttc
      721 gaggcggtgc tgctcagcct caccggcggt gtggcgggta tcctgggcgg catactggtg
      781 tcgtggctga tctcggcggt ggcgcactgg ccgacgcagc tttcgccccc ggccatcctc
      841 ggaggtttcc tgttctcagc ggcgattggg atcttcttcg gcttctatcc ggcccgcaag
      901 gccgcgcagc tcgatccgat cgaggccctg cactacgagt gagcaagcag cttcggaccg
      961 gagtccgctt cacgagattg cgagcggccg acggctcgcc agcaccgaac cccaactgct
     1021 aggctccgct tccgggggcg aagaggggtt cgaatgaaga gacccagtgc acctgttgcg
     1081 gaaatcccgg ttgtccgcca accgatcgcc ggcacggtcg gcgactggaa gcccgtcccc
     1141 ctgcggaggg tcccgctctt catcgagcag agcctgagcc aaggcctgca gtgggttgtc
     1201 ttcgagccca acggagccga gctctgggcc gccgtccgcc gggacgccga ggcctttctg
     1261 ctggaactcc atcgccaggg cgtgctgaag ggcgccaagc cggatcaagc cttcttcgtc
     1321 cgctgtgacg tcaccacaat gacccagaac gacctcgaca acggccggct ggtcgtcgag
     1381 atcgggatcg ccaccgtccg tcccgcggaa ttcgtgatct tccggatcgg cctatggaca
     1441 gagaccggcc aagacggctc gtcgccaccg cccccaccgc cctgagggtc gcgccctact
     1501 ccgccgtcgc cacggggacc aggatctctc cgccggactc gcggaatttc tcggccatct
     1561 ccgccatccc cgtcgccacc tcgttctgtt tgcgggcgtc ctcgcggatg tcctggctga
     1621 tcttcatgga gcagaatttc gggccgcaca tggagcagaa gtgggcggtc ttgaaggcct
     1681 ccttgggcag gctctcgtcg tggtattcgc gggcggtctc ggggtcgatg ccgaggttga
     1741 actggtcttc ccagcggaac tcgaagcggg ccttcgacaa cgcattatcg cggacctgcg
     1801 cgcccggatg gcccttggcg aggtcggccg cgtgcgccgc gatcttgtag gtgatgacgc
     1861 cttccttgac gtcgtcgcgg tcgggcaggc ccaggtgctc cttgggcgtc acgtagcaaa
     1921 gcatggccgt gccgaaccag ccgatcatgg ccgccccgat ggcgctggtg atgtggtcgt
     1981 atccgggggc gacgtcggtg gtgagcgggc ccagggtgta gaagggcgcc tcgccgcaga
     2041 cggccagctg cttgtccatg ttggccttga tcttgtgcat cggaacgtgg ccggggcctt
     2101 cgatcatcac ctggacattg tgcttccagg cgacctgggt gagctcgccc agggtctcca
     2161 gctcgccgaa ctgggccgcg tcattggcgt cggcgat
//
LOCUS       DATAJL010000542         1502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_22119,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000542 DATAJL010000000
VERSION     DATAJL010000542.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22119"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..751
                     /locus_tag="VHN39_10365"
     CDS             <1..751
                     /locus_tag="VHN39_10365"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX2816791.1"
                     /translation="PQAADFVDALYASVVTAGTHRASSIRVAEAAKVIENTQRDLNIA
                     LINEFSMIFQRLGVDTSEVLAAAGTKWNFLNFRPGLVGGHCIGVDPYYLTHKAEALGY
                     HPEVILAGRRINDGMGPYVARQLMGEMARRGTAVKGARVLMMGLAFKENCTDLRNTRV
                     IDIVQELAGAGAAIDVWDPWIDAAEARHEYGLDLIAAPKAGAYDAVVLAVAHAQFVEL
                     GAEAIRAFGGAKSVLFDVKSILPKDAADLRL"
     gene            complement(748..>1502)
                     /locus_tag="VHN39_10370"
     CDS             complement(748..>1502)
                     /locus_tag="VHN39_10370"
                     /inference="COORDINATES: protein motif:HMM:NF042649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX2816792.1"
                     /translation="SNNAASTTNAAAKACEEVRSRLAMAAVRNDAGVFASQDPGKLQL
                     QGGALVGPGGKSEPLATALARVAGGALEVYVENVPDGLPPDAAAGLYQGKMAMSRGSG
                     RKDVTAYAFGAHFIEVRIHERTRELRTPRIVSAFAAGTIVNPLAAYSQFMGGAIWGVS
                     SALHEATEIDQRAARYANTNFADYLIPVNADVPQLDVIFVPEEDTRVNPLGVKGIGEI
                     GIVGMNAAVANAVFHATGKRIRDLPIRIEDLL"
BASE COUNT          220 a          484 c          552 g          246 t
ORIGIN      
        1 gccgcaggcc gcggacttcg tcgatgcgct ctatgcctcg gtggtgacgg ccggcacgca
       61 ccgcgccagc tcgatccgcg tggccgaggc cgccaaggtg atcgagaaca cccagcggga
      121 cctgaacatc gccctgatca acgaattttc gatgatcttc cagcggcttg gcgtcgatac
      181 ctcagaagtc ttggcggcgg cggggaccaa gtggaacttc ctaaatttcc gtccgggcct
      241 ggtcggcggc cactgcatcg gggtcgaccc ctattacctg acccacaagg ccgaggccct
      301 gggctaccac cccgaagtga tcctggccgg gcggcggatc aacgacggca tggggcccta
      361 cgtggcgcgc cagctgatgg gcgagatggc gcggcggggg accgccgtga agggcgcgcg
      421 tgtcctgatg atgggcctgg cgttcaagga aaactgcacc gacctgcgca atacccgggt
      481 gatcgacatc gtccaggaac tggccggggc cggcgcggcg atcgatgtct gggacccctg
      541 gatcgacgcg gccgaggcgc ggcatgaata cgggctggat ctgatcgcgg cgcccaaggc
      601 cggcgcctat gacgccgttg tcctggcggt ggcgcatgcc cagttcgtgg agctgggcgc
      661 cgaggccatc cgcgctttcg gtggggcgaa gtccgtgctg ttcgacgtga agtcgatcct
      721 gccgaaggac gccgcggacc tgcggcttta gagcaggtcc tcgatgcgga tcggcagatc
      781 gcggatgcgc tttcccgtcg cgtggaagac ggcgttggcg accgcggcgt tcatgccgac
      841 gatgccgatc tccccgatcc ctttgacgcc cagcggattc acccgcgtgt cttcctccgg
      901 cacgaagatc acatcgagtt gcggtacgtc ggcgttcacg gggatcaggt agtcggcgaa
      961 gttggtgttg gcgtagcgcg cggcgcgctg gtcgatctcg gtggcctcgt gcagggcgga
     1021 ggagacgccc cagatggcgc cgcccatgaa ctggctgtag gcggccagcg gattgacgat
     1081 ggtcccggcg gcgaaggccg agacgatgcg cggcgtgcgg agttcgcgcg tgcgctcatg
     1141 gatccgcacc tcgatgaagt gggcgccgaa ggcgtaggcg gtgacgtcct tgcggccgga
     1201 tccgcgcgac atggccatct tgccctggta gaggcccgcc gcggcgtccg gcggcaggcc
     1261 gtcgggcacg ttctccacgt agacctcaag ggcgccgccg gccacgcggg cgagcgccgt
     1321 ggccagcggc tcggacttgc cgccgggccc gaccagggcg ccgccctgca gttggagctt
     1381 gccggggtcc tggctcgcga agacgccggc gtcgttgcgc acagcggcca tggccaggcg
     1441 gctccgcacc tcctcgcacg ccttggcggc ggcgttggtg gtggacgcgg cgttgttcga
     1501 tc
//
LOCUS       DATAJL010000543         4658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94199,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000543 DATAJL010000000
VERSION     DATAJL010000543.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4658
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94199"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..963
                     /locus_tag="VHN39_10375"
     CDS             <1..963
                     /locus_tag="VHN39_10375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEX2816793.1"
                     /translation="GLTLEAPAGATVIPFSATTRQSGLDTQDGKWRKGAVDAVLKDAG
                     LTAAEAPAEFNAAVDRIARSGGTPLAVSENGILFGVIHLKDVVKPGVKERFADLRRMG
                     LRTVMITGDNPVTAAAIASEAGVDDFLAEATPEDKLRLMREEQGRGRLVAMCGDGAND
                     APALAQADVGVAMQTGAQAAREAGNMVDLDSDPTKVIEIVEVGKQMLITRGALTTFSI
                     ANDVAKYFAIIPALFVITLPALGALNIMGLHSPKSAILSAVIFNALVIVALIPLALRG
                     VKYRAIGAGKLLQRNLLIYGLGGIVAPFIGIKLIDIIVSGVGLA"
     gene            1158..1751
                     /gene="kdpC"
                     /locus_tag="VHN39_10380"
     CDS             1158..1751
                     /gene="kdpC"
                     /locus_tag="VHN39_10380"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEX2816794.1"
                     /translation="MFAQIRPAIVATLFFTLLLGVGYPLAITGIAQLAFPAQAGGSLI
                     RDAKGQVIGSALIAQSFAKPQYLHPRPSAAGNDGYDASGSSGSNYGPLNPDLAKRVAK
                     DTAGLQSEGAGPVPADAVTTSGSGLDPDISPANAHRQAARVAAARGIPVADVERAIAA
                     NTKGPWLRVFGQPAVNVLKANLALDAAAPARPTAPAS"
     gene            1774..4461
                     /locus_tag="VHN39_10385"
     CDS             1774..4461
                     /locus_tag="VHN39_10385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HEX2816795.1"
                     /translation="MHPEEPRRPDPEALLAAANKARRGRLKVFLGMAPGVGKTFEMLR
                     TARRRKAEGDDVVIGVVESHGRRETEALLRGLEVLPRKPVEYKGRALMEFDIDAALAR
                     RPKLLIVDEYAHSNATGSRHPKRWQDVEELLGAGIDIWTTLNVQHVESLVDVVQRITG
                     VRQRETVPDSALSRADDIELVDITPDELRERLADGKVYVPETARLAAENFFKAENLTA
                     LRELALRRMAQTVDDQLIATMREKGVEGPWAAGERIVVLVGGDAMACALVRTARRLSD
                     MMMDAPWTVAHVERPNQKPPSATAQGRLSEALKLAEQLGGSTVVLTGDDVVASVMSYA
                     RRNNVTQIVIGKSRDSRLRELLGQILATALLRQARGAAVHVVTERGGEDEPLQLVELP
                     RFSLAGWRGHVGALAFVALTGAIAGLLDQLASGANLAMIFLLSVLGAGLAFGLWPAVT
                     AAAAAALVYNFFFLEPRLSFVIGHPTDVLTFVVFFVVAMTTGWLTGRIRDQSRRTSAR
                     ASAIAALLASSRRLSGSATRDDTAHVLADQISAAGSAKAIVLLPNGEEIEAVAGAPEL
                     ETLGAAAMAAARWAWEKGESAGHGTGTLPQTSWTFWPLQGVRQRVGVAGVEANTLRPG
                     SDEEKLVLALLDQGAVALERADLALAAVEAETLRRSDRFRAALLNSISHDLRTPLSTV
                     LGSTTTMIEYGEGMPAATRADLLQSVQEEAERLNRYVGNLLDMTRLEGGGLNIREDWV
                     DVRDVLSAAAERVERRLGKRHFERDFPADLPPVRLDPYLLEQAVVNILENAIAYSPDD
                     TAIDLAAYEDRNNVVISIEDEGKGIPTAELERVFEKFRRMEEPTDRTKGVGLGLSISK
                     GFIESMGGRIAAASPIHGDHGTRVLISLQKSPQRPDTTP"
     gene            4458..>4658
                     /locus_tag="VHN39_10390"
     CDS             4458..>4658
                     /locus_tag="VHN39_10390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2816796.1"
                     /translation="MSALHPRVLVVDDEPQIHRFLRAALEAAGFEPLRANTGGEGLRE
                     IASTAPDAVVLDLGLPDMDGREV"
BASE COUNT          739 a         1652 c         1555 g          712 t
ORIGIN      
        1 ggcctgacac tcgaagcgcc cgccggcgcc acggtcatcc cgttcagcgc caccacccgc
       61 caatccggtc tcgacactca ggacggcaag tggcgcaagg gcgcggtaga tgcggtgctg
      121 aaggatgccg ggctcacggc cgctgaggct ccggccgaat tcaacgctgc ggtggaccgg
      181 atcgcgcgct ccggcggcac gccgctggcg gtctcggaga atgggatcct attcggcgtc
      241 atccacctca aggacgtggt gaagcccggc gtgaaggagc ggttcgccga cctgcgccgc
      301 atgggcctgc gcacggtgat gatcaccggc gacaacccgg tgaccgccgc ggcgatcgcc
      361 tccgaagccg gcgtcgacga ctttctcgcc gaagcgacgc ccgaggacaa gctgcggctg
      421 atgcgcgagg agcagggccg tggccggctg gtggccatgt gcggcgacgg cgccaacgac
      481 gccccggcgc tcgctcaggc cgatgtcggc gtggccatgc agaccggcgc ccaggcggcc
      541 cgcgaggccg gcaacatggt cgacctcgat agcgacccca ccaaggtcat cgagatcgtc
      601 gaggtgggaa agcagatgct gataacccgg ggcgccctga ccaccttctc gatcgctaac
      661 gacgtggcca agtacttcgc gatcatcccg gcgctgttcg taatcaccct gccggccttg
      721 ggcgccctca acatcatggg ccttcacagc cccaagagcg cgatcctctc ggcggtgatc
      781 ttcaacgccc tggtgatcgt ggccctcatt ccgctggcgc tgcgcggcgt caaatatcgc
      841 gccatcgggg ccggcaagct gctgcagcgc aatctgctga tctatggcct cggcggcatc
      901 gtcgcgccct tcatcggcat caagctcatc gacatcatcg tctccggcgt aggcctcgcg
      961 tgatggcgca atcgttcatc ccgacgctgc tgctcggacc caccctcctg ctcgcgtgcg
     1021 ccagttcgcg tgcggaagag gcggcggacg tcactccccg tttcccggga cccccgaggc
     1081 gtccgccgct gacctccagc accgccggac acgacggcaa cgcagccccc ctcaaggcga
     1141 ctttttagga gcccgccatg ttcgctcaaa tccgccccgc catcgtcgcc accctgttct
     1201 tcaccctact gttgggcgtc ggctatccac tggccatcac cggcatcgcc cagttggcgt
     1261 tcccggctca ggccggcggc agcctgatcc gtgacgccaa gggccaggtg atcggctcgg
     1321 cgctgatcgc ccagagcttc gccaagccgc agtaccttca tccgcgcccc tcggcggccg
     1381 gcaacgacgg ctacgacgct tctgggtcct ctggctcgaa ctacggtccg ctgaacccgg
     1441 acctggccaa acgcgtcgcc aaggatacgg cgggcctgca gagcgaaggc gcaggacccg
     1501 tcccggccga cgccgtgacc acgtccggct ccggcctcga cccggacatc tcgccggcca
     1561 acgcccaccg tcaggcggcg cgtgtcgccg ccgctcgcgg cattccggtg gcggacgtcg
     1621 aacgggccat cgccgccaac accaaggggc cttggctgcg cgtcttcggc cagccggccg
     1681 tcaacgtgct aaaagccaac cttgcgctgg acgcggcggc tccggctcgg ccgactgcgc
     1741 cggcaagcta ggcgccgata gcgcacggcg gccatgcatc ccgaggaacc gcgtcggcct
     1801 gatccagagg cgctcctcgc cgccgccaac aaggcgcggc ggggacgcct caaggtgttt
     1861 ctcggtatgg cgccgggggt cggcaagacc ttcgagatgc tgcgcacggc ccgccggcgg
     1921 aaggcggagg gcgacgacgt ggtgatcggc gtggtcgaga gccatgggcg gcgcgagacc
     1981 gaggccctgc tgcgcggcct ggaggtgctg ccgcgcaaac ccgtcgagta caagggtcgg
     2041 gctctcatgg agttcgacat cgacgcggcg ctcgcccgca ggccgaagct gctgatcgtc
     2101 gacgaatacg cccactcaaa cgccacggga tcccgccatc ccaaacgttg gcaagacgtc
     2161 gaagagttgc tgggcgcggg catcgacatc tggacgacgc tcaacgtcca gcacgtcgag
     2221 agcctggtgg atgtcgtcca gcggatcacc ggcgtgcggc aacgcgagac cgtgccggat
     2281 tcggcgctat cgcgggccga tgacattgag ctcgtcgaca tcaccccgga cgagctccgc
     2341 gagcgcctgg ccgacggcaa ggtctacgtg ccagagacgg cgaggctggc cgccgaaaac
     2401 ttcttcaagg ccgagaacct tacggcgctg cgcgaacttg cgctgcggcg catggcccag
     2461 acggtcgacg accagctgat tgcgaccatg cgggaaaagg gcgtcgaggg tccctgggcg
     2521 gcgggcgagc gcatcgtcgt cctggtgggc ggtgacgcca tggcctgcgc tctggtccgc
     2581 accgcgcggc ggttgtccga catgatgatg gacgcgccct ggaccgtcgc ccacgttgaa
     2641 cggccgaacc agaagccacc ttccgcgacc gcgcaaggac gcctcagcga ggcgctcaag
     2701 ctcgctgagc agctcggcgg atccacggtg gttctgaccg gcgacgacgt cgtcgcctcg
     2761 gtgatgtcct acgcgcggcg caacaacgtc actcagatcg ttatcggcaa gtcgcgcgac
     2821 agccggctgc gtgagctgct tggccaaatc ctggcgacgg cgctcctgcg ccaggcgcgg
     2881 ggcgcggcgg tccatgtggt caccgagcgc ggcggcgaag atgagccgct gcagctcgtt
     2941 gaactgccac gcttcagcct cgcgggctgg cgcgggcacg tgggggcgct tgccttcgtt
     3001 gcgctgacgg gcgccatcgc cggcctgctc gatcaactcg cgtccggcgc caacctggcg
     3061 atgatcttcc tgctcagcgt cctgggcgcc gggttggcct tcggtctgtg gcctgcggtg
     3121 acggctgcgg ctgcggcggc gctcgtctac aacttcttct tccttgagcc gcggctgtcc
     3181 tttgtcatcg gtcatccgac tgacgtcctg accttcgtcg tgttcttcgt cgtggccatg
     3241 accaccggct ggttgaccgg ccgcattcgc gaccagtccc ggcggacctc cgcccgggcg
     3301 tcggctatcg ccgcgctact cgcctccagc cggcgccttt ccggatcggc gacccgcgac
     3361 gacaccgccc acgtcctggc cgatcagatt tccgccgccg gaagcgctaa ggcgatcgtg
     3421 ctgctaccca acggggagga gatcgaggcg gtcgcgggcg cccccgaact cgagactctg
     3481 ggcgccgccg ccatggccgc cgcgcgctgg gcctgggaaa agggcgagtc cgccggccac
     3541 gggaccggaa ccctgcccca aaccagttgg accttctggc ctctccaggg ggttcgccag
     3601 cgcgtcgggg tcgccggcgt cgaggccaac accctgcggc ccggctcgga cgaagaaaag
     3661 ctggtcctgg cgctcctcga ccagggcgcg gtcgccctgg agcgcgccga cctggccttg
     3721 gcggcggtcg aggcggagac cttgcggcgg tcggaccgat tccgcgctgc cttgctgaac
     3781 tccatcagcc acgacctgcg cacgccgctc tcgacggtgc tggggtcgac caccaccatg
     3841 atcgagtacg gcgagggcat gcccgcggcg acccgcgcgg acctgctgca gagcgtccag
     3901 gaagaggccg agcgcctcaa ccgctatgtc gggaacctcc tcgacatgac ccggctggaa
     3961 ggcggcggcc tgaacatccg cgaggactgg gtcgatgtcc gcgacgtcct gtcggcggcc
     4021 gcggagcggg tcgagcgccg cctcggcaaa cgccacttcg aacgggactt cccggcggac
     4081 ctgccccccg tccgcctcga tccgtatttg ctggagcagg cggtggtcaa catcctcgaa
     4141 aacgccatcg cctacagtcc cgacgacacc gcgatcgacc tggcggccta tgaggaccgc
     4201 aataacgtcg tcatcagcat cgaggacgag ggcaagggca tccccacagc ggagctggaa
     4261 cgggtcttcg agaagttccg ccgcatggaa gagcccaccg atcggaccaa gggcgtgggc
     4321 cttggacttt cgatatcgaa gggcttcatc gagtccatgg gagggcggat cgcggcggcc
     4381 agtccaatcc atggcgacca cggcacccgg gtgctgatca gcctgcaaaa atctccgcaa
     4441 agacccgaca ccaccccatg agtgcgcttc atcctcgcgt cctggtcgtc gatgacgagc
     4501 cccagatcca ccgctttctc cgcgcggcgc tggaggcggc cggcttcgaa ccgttgcggg
     4561 ccaacacagg cggcgagggt ctgcgcgaga tcgccagcac cgccccggat gcggtggtgc
     4621 tcgatcttgg cctgccggac atggacggcc gcgaggtg
//
LOCUS       DATAJL010000544         3683 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_107065,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000544 DATAJL010000000
VERSION     DATAJL010000544.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3683)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3683)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3683
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107065"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..315)
                     /locus_tag="VHN39_10395"
     CDS             complement(<1..315)
                     /locus_tag="VHN39_10395"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEX2816797.1"
                     /translation="MIDPNTERGAGALVLFSGGQDSTVCLAWALERYSHVETVGFDYG
                     QRHSVEMEARRAVRARIAAGFPDWASRLGEDHVLDMKGFGAVAASALTADRAIEMTAK
                     GLP"
     gene            530..1657
                     /locus_tag="VHN39_10400"
     CDS             530..1657
                     /locus_tag="VHN39_10400"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2816798.1"
                     /translation="MSLQAFFFDRVTAEICQQMEGVLALTEQLQRQRLSPDAESCASG
                     VEEAAGGVLRMMLAAINLRKVTKDGLTLEPAPLRLRELVDEVHSRWEPAARTSGVTLL
                     VSYDGDPNACALGDRARLLQVFDGFVGEAVASMRRGAVEASIRTVVSPEGVRLEGRVR
                     GARNPAWEAQDLEARVRDVESRFGLEVAIGVVLARQIIEGLGGSMRNEGAGGASETII
                     FDVLLPEASETPVQEPQPAERSAHILVVDDNATNRMVAQALCEMFDCTCESANDGAEA
                     VEAARSGRFDLILMDIKMPVMDGVAATRAIRAMGGDASLVPIIALTANAEPEDSEGYL
                     AAGMNGVVEKPMKPEHLLAALQEALGENDAAETAARAAAAA"
     gene            complement(1686..3026)
                     /locus_tag="VHN39_10405"
     CDS             complement(1686..3026)
                     /locus_tag="VHN39_10405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816799.1"
                     /translation="MRVQIVPIARSAIMRAAMAGAAVTLCALSAAPAAWAAAPETIRW
                     EVDAARDFSADVVQLTLTAETPNGRSITSSPASLNTLVGLAASQLQTAAAQPVAFHIQ
                     RDAGEFDCQGTAQARRASGECQFRGSQTFAQILQQRGAGMAKPADLYRMTVHDVGSNY
                     LDELRQLKYPMPTVDELARAGEHGVSPKYIAEMVRVGYGFGNMDGLIQAHDHGVGPDY
                     AAAMRDAGFPSLRAEDLTNLHDHGVSAEFMAGLQHAGHSGLPVDQVERLHDHGVSTVW
                     LASLQHDGYGGLSTDDLVRLRDRGISADYVTSLGSAGYRQLPVEQILKLQEHGVSTDW
                     LAAIRKAGYGGLSTDQLVNLRDRGISADYAGAMRKAGYRTLAPEEMILWHDHGVSSDF
                     VQALVATGYGDTTPPDVAKMRDHGLTEATLRKASTLGRRLSADEIIRLRESGTL"
     gene            complement(3122..>3683)
                     /locus_tag="VHN39_10410"
     CDS             complement(3122..>3683)
                     /locus_tag="VHN39_10410"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2816800.1"
                     /translation="IGGNSHEASLFGDNPAPAKAALGAAYPELLEAVRKAGPSKAGAE
                     PDLITQSLAIQPSRYLAQRNAAAGLPAYSYYFDQVASSDRAMAVGTMHGGELSYLFGT
                     RIEKEVWDDEDKRVSQLMGDYWVRFAKTGDPNGHGAPNWAPVTKTASPEMVFDAHPHT
                     AQPSAVEDRIEAAAVAMAVKAWDAAH"
BASE COUNT          555 a         1288 c         1254 g          586 t
ORIGIN      
        1 cggcaggccc ttggcggtca tctcgatggc ccggtcggcg gtgagcgcgg aggccgccac
       61 cgctccgaag cccttcatgt ccagcacatg gtcctcgccg aggcgcgagg cccagtccgg
      121 aaaccccgcc gcgatccgcg cacggacggc ccttcgggcc tccatctcga cggaatggcg
      181 ctggccatag tcgaagccca cggtctcgac gtggctatag cgctcaagcg cccaggccag
      241 gcagaccgtg gagtcctgcc cgccggagaa cagcacaagg gcgccggccc cccgctcggt
      301 atttgggtcg atcatcgccc ccatatgcgc gatcggtggc gcatcgggaa ggccgcgagg
      361 ccctgacgcg cccgcggacg aaccctctgc aagctcatct gaccgctacg atgagcgcgt
      421 ctgaccaccg atgatcggat gaccttgtgt cagcggtgtc acttaacctc tccgcaagcg
      481 cttggcgcca tagtgtggct acgtcgcgtt tcacaacctt cggctgtcca tgtccctgca
      541 agcgtttttc ttcgaccgag tgaccgccga gatctgtcag cagatggagg gcgtgctcgc
      601 gctcaccgaa cagctccagc gtcagcggct ctcgccggac gcggagtcct gtgctagcgg
      661 cgtcgaggaa gccgccggcg gcgtccttcg gatgatgctg gccgccataa acctgcggaa
      721 ggtgaccaag gacggcctca ccctcgagcc ggcgccgctg cgcctgcgcg aactggtcga
      781 cgaggtccac agccgctggg agcccgccgc ccgcacctcg ggcgtcaccc tgctggtctc
      841 ctatgacggc gatcccaacg cctgcgcgct gggcgaccgc gcgcgcctgc ttcaggtctt
      901 cgacggtttc gtcggcgagg cggtggccag catgcgccgc ggcgccgtgg aggcctccat
      961 ccgcaccgtg gtctcccccg aaggcgtccg cctggaaggc cgggtccgcg gcgcgcgcaa
     1021 tcccgcctgg gaagctcagg acctggaagc ccgcgtccgc gacgtcgaga gccgctttgg
     1081 cctggaagtc gccatcggcg tggtcctcgc ccgccagatc atcgagggcc tgggcggatc
     1141 catgcgcaac gaaggcgccg gcggcgcctc cgaaaccatc attttcgacg tgctcctgcc
     1201 cgaagcgtcc gagacgccgg tccaggaacc gcaacccgcc gaacggtcgg cccacatcct
     1261 ggtcgtcgac gacaacgcca ccaaccgcat ggtcgcccag gcgctttgcg aaatgttcga
     1321 ctgcacctgc gaaagcgcca atgacggcgc cgaagccgtc gaggccgcgc gcagcggccg
     1381 cttcgatctg atcctcatgg atatcaagat gccggtgatg gacggcgtgg ccgccacccg
     1441 cgccattcgc gccatgggcg gcgacgccag cctggtgccg atcatcgcgc tcaccgccaa
     1501 cgccgagccg gaagactccg agggctatct cgccgccggc atgaacggcg tcgtcgaaaa
     1561 gcccatgaag ccggagcacc tgctggccgc cctgcaggaa gccctcggcg agaacgacgc
     1621 cgccgaaacc gccgcccgcg ccgccgcggc ggcttgaggc cgccgacctc ggaccaaaga
     1681 gccgcctaga gcgtccccga ctcccgcaga cggatgatct cgtcggcgct cagccggcgt
     1741 ccgagggttg acgccttgcg aagcgtggcc tccgtcaggc cgtggtcgcg catcttggcg
     1801 acatccggcg gcgtggtgtc gccgtagccg gtggccacca gcgcctggac gaagtccgaa
     1861 ctcaccccat ggtcgtgcca caggatcatt tcctcaggcg caagcgtgcg gtagcccgcc
     1921 ttgcgcatgg cgccggcata gtccgccgag atcccgcggt cgcgcaggtt gacgagctga
     1981 tcggtcgaaa gcccgccgta gccagccttg cgaatggccg cgagccagtc ggtcgaaacc
     2041 ccgtgttcct gcagcttgag aatctgctcg accggcagtt gccgatagcc ggccgatccc
     2101 aggctggtga cgtagtcggc cgaaatcccg cggtcgcgca ggcggacaag gtcgtccgtc
     2161 gacagtccgc catagccgtc gtgctggagc gacgcgagcc agactgtcga gacgccgtga
     2221 tcgtgcagtc tctccacctg atcgaccggc aggccgctat ggcccgcatg ctgcaggcca
     2281 gccatgaact cggccgacac gccgtggtcg tgaaggttgg tcagatcctc ggcccggagc
     2341 gagggaaagc cggcgtcgcg cattgccgcg gcgtagtcgg gcccgacacc gtgatcgtgc
     2401 gcctggatca ggccgtccat gttcccgaac ccgtagccga cccggaccat ctcggcgatg
     2461 tacttcgggg aaacgccgtg ctcgcccgcg cgggccagct cgtcgaccgt cggcatcggg
     2521 tatttgagct ggcgaagctc atcgagataa ttgctcccca cgtcgtgcac ggtcatccgg
     2581 tagaggtcgg cgggcttggc catgccggcg ccccgctgtt gcaggatctg ggcgaaggtc
     2641 tggctgccgc ggaattggca ctcgccggag gcgcgcctgg cctgcgcggt gccctggcag
     2701 tcgaactctc cggcgtcgcg ctggatgtgg aaggcgacgg gttgcgccgc ggcggtctgc
     2761 agctggctgg cggccaggcc gaccagggtg ttcagcgaag cggggctcga ggtgatgctg
     2821 cggccgttgg gcgtctcggc ggtcagggtg agttgcacaa cgtcggcgct gaagtcgcgg
     2881 gcggcgtcga cctcccagcg gatcgtttcc ggcgcggcgg cccaagcggc cggggcggcg
     2941 gaaagggcgc agagggtgac ggcggccccg gccatcgccg ccctcatgat cgctgaacgg
     3001 gcgatcggga ctatctggac acgcatcgaa actctcctgc ggcctgcacg cacgccgccc
     3061 tagggtcctc cagcggccgg caggggtaaa cctctggtcg cattaaattt tcgacaggcg
     3121 ctcaatgcgc cgcgtcccag gccttcaccg ccatggcgac cgcggcggct tcgatcctgt
     3181 cctccaccgc gctcggctgg gcggtgtgcg gatgggcgtc gaagaccatt tccggcgagg
     3241 ccgtcttggt caccggggcc cagttggggg cgccgtggcc gttcgggtcg ccggtcttgg
     3301 cgaaccgcac ccagtagtcg cccatcagct gcgacacgcg tttgtcctcg tcgtcccaga
     3361 cttctttctc gatccgcgtg ccgaacagat agctgagttc gccgccatgc atggtcccca
     3421 ccgccatggc ccggtcgctg ctagccacct ggtcgaagta gtagctatag gccggcaggc
     3481 cggcggcggc gttgcgctgc gccaggtagc gtgagggctg gatggccagg ctctgggtga
     3541 tcaggtcggg ctcggcgccg gccttgctgg gtccggcctt gcgcaccgcc tccaggagct
     3601 cgggataagc cgcgcccagg gccgccttgg ccggcgcggg gttgtcgccg aacaggctcg
     3661 cctcgtggga gtttccgccg atc
//
LOCUS       DATAJL010000545         2907 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_48138,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000545 DATAJL010000000
VERSION     DATAJL010000545.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2907
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48138"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..752
                     /locus_tag="VHN39_10415"
     CDS             <1..752
                     /locus_tag="VHN39_10415"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2816801.1"
                     /translation="FQPSIRTIWRSPGGWSAWGAISRATRTPSPFETDITVATPFLVV
                     LPSTLQSERLTAYEIGWRGQLWRGAALDLTAYHQVYDRLIAEAVVGAAGPAGPLIAQY
                     GNRTTGRNDGVEAALDVKLTPQWTIKAAGSWQSLNIPDLALVPGSSANAVRAGASPRG
                     QASIRSRWNVTDAIDFDAWLRHVGQLDDGAVKAYNNLDLRLAWRPNAHLELSLAGMNL
                     LSRQRIEFIDPGRPFQAVVDRRAQISLAVRY"
     gene            761..1306
                     /locus_tag="VHN39_10420"
     CDS             761..1306
                     /locus_tag="VHN39_10420"
                     /inference="COORDINATES: protein motif:HMM:NF025069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiR family protein"
                     /protein_id="HEX2816802.1"
                     /translation="MNAFPRHRRAWRPVIASAAAALLLAGAPAMGQDASSGEQATKAA
                     MIYNFGRFTAWPDARFAGPADPVVLCVNPAAALAGPLQALAGKPVGGRTLVVRQTTQV
                     DRTCTMAYVGAGAANDSYVAGLRDKGVLTIGEAPGFTHAGAIQLVTIGRQVRFEVNQQ
                     NALAAGAHFSSNLLRLATAVH"
     gene            1306..>2907
                     /locus_tag="VHN39_10425"
     CDS             1306..>2907
                     /locus_tag="VHN39_10425"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816803.1"
                     /translation="MLVARWLDASLRLKVGAVVLATTFMALSLSYALSAWQQSGWERR
                     GAAAQQSAVADMLASNLGASLVFNDPSSASTLLKSVRRIPSVQYAYVLDKDGKLFAAS
                     KPGLTTPRTAGGRASRTNVRLEGDMLEVRVPVDVDAERVGELVTVSSLAGLRQALIRQ
                     GLATGLLFAIALVVALLAGFWLVGRIIVPVRRLSAAIADARRSGDFSQLVERKSADEL
                     GQLTDDFNALFQQLGESDVALKRSVGDLVQARDQAEAANAAKSQFLANMSHEIRTPLN
                     GVLGMVQVMEFGELPEVQREHLHTIRDSGQALLQVLNDVLDFSKIEAGKLELSVSEFS
                     VDALIKTVTATFSPSASQKGLQLGCSVSDDALGAWVGDAARIRQVLMNLVSNAVKFTD
                     AGRVDMDVTRLPAGLAITVTDTGVGMAEADIPKLFNKFSQVDSSATRRFSGTGLGLAI
                     TREIVDLMAGQISVESVLGAGSSFRVVLPLPKLDRATPAEPVAAASKAPEASGDRPLR
                     ILAAEDNPTNQRVLAALLKTLDAELT"
BASE COUNT          445 a         1003 c          981 g          478 t
ORIGIN      
        1 aattccagcc gagcatccgc accatctggc gcagccccgg cggctggtcg gcgtggggcg
       61 ccatctcgcg cgccacgcgc acgccctcgc cgttcgaaac ggacatcacc gtcgccacgc
      121 cgttcctggt ggtgctgccc agcacgctcc agtccgaacg gctcaccgcc tatgagatcg
      181 gctggcgcgg gcagctctgg cgcggcgcgg cgctggatct caccgcctat catcaggtct
      241 acgatcgcct gatcgccgag gcggtggtcg gcgcggccgg tcccgcgggc ccgctgatcg
      301 cgcagtacgg caatcgcacc acaggacgca acgatggcgt cgaggcggct ctggacgtca
      361 agctcacccc gcaatggacg atcaaggccg cggggtcctg gcagtcgctg aatatacccg
      421 acctggccct cgtgcccggc agttccgcca acgccgtgcg cgccggggcc tcgccgcgcg
      481 ggcaagcctc aatacggtcc agatggaacg tgacggacgc gatcgatttc gacgcctggc
      541 ttcgccacgt gggtcagctc gatgacggcg cggtcaaggc ttacaacaac cttgacctga
      601 ggctggcgtg gcggcccaac gcccacctcg aactgtcgct cgccggcatg aacctgctga
      661 gccgccagcg catcgagttc atcgatcctg gtcggccgtt ccaggccgtg gtcgaccgcc
      721 gggcgcagat cagcctggcg gtccgctatt gagccggcag atgaacgcct tcccccgcca
      781 ccggcgcgcc tggcgcccag tcatcgcctc cgcggcggcc gctctgctgc tggcgggcgc
      841 acccgccatg gggcaggacg cctcaagcgg cgagcaggcc accaaggcgg cgatgatcta
      901 caacttcggc cgcttcaccg cttggccgga cgcccggttc gccgggcccg ccgatcctgt
      961 tgtgttgtgc gtcaaccctg ccgcggcgct cgccggtccg ttgcaggccc tcgccggcaa
     1021 gcccgtgggc ggccgcaccc tggtggtgcg ccagaccacg caggtcgatc gcacctgcac
     1081 catggcctat gtcggcgcgg gcgcggccaa cgacagctat gtcgcgggcc tgagagacaa
     1141 gggcgtgctg accatcggcg aggcgccggg cttcacccac gccggcgcca tccagctggt
     1201 gaccatcggg aggcaggttc gtttcgaggt caatcagcag aacgccctgg cggccggcgc
     1261 ccacttcagt tcgaatctgc ttcgtctggc gacggcggtg cactgatgct cgtggcgcgc
     1321 tggctggacg cttcgttgcg cctgaaggtc ggcgcggttg tgcttgccac gacgttcatg
     1381 gccctttcgc tttcctacgc cctgtctgcc tggcagcaat cggggtggga gcggcgcggc
     1441 gcggcggctc agcagtcggc cgtcgccgac atgctggcct ccaacctcgg cgcatcgctg
     1501 gtgttcaacg atccatcgag cgcttcgacc ctgctgaaat cggtgcggcg tattcccagc
     1561 gtccagtacg cctatgtcct cgacaaggac ggcaagctgt tcgccgccag caagcccggg
     1621 ctgacgacgc cccgcacggc gggcgggcgc gcaagccgaa ccaacgtccg cctcgaaggc
     1681 gatatgctcg aggttcgggt cccggttgac gtggacgccg agcgcgtcgg cgaactggtc
     1741 acggtctcca gcctcgcggg cctgcgccag gcgttgatcc gccagggcct tgcgacaggt
     1801 ctgctgttcg cgatcgcgct ggtcgtggcc cttctggccg gcttctggct ggtcgggcgg
     1861 atcattgtgc cggtcaggcg gctgtcggcc gccatcgctg acgcgcggcg gagcggcgat
     1921 ttctcgcaat tggtcgagcg caagagcgcc gacgaactgg gccagctcac cgatgacttc
     1981 aacgcgctgt tccagcagct cggcgagagc gacgtcgcct tgaaacgaag cgtcggcgac
     2041 ctggttcagg cccgcgatca ggccgaggcg gcgaatgcgg ccaagtcgca gttcctcgcc
     2101 aacatgagcc acgaaatccg cacacccctg aacggggtgc tgggcatggt ccaggtcatg
     2161 gagtttggcg agttgcccga ggtgcagcgg gaacacctgc acaccatcag ggattcgggg
     2221 caggccctcc tgcaggtgct aaacgacgtg ctcgacttct cgaagatcga ggccggcaag
     2281 cttgaactga gcgtgtccga attctcggtg gacgcgttga tcaagacggt gaccgcgacc
     2341 ttcagcccga gcgcaagcca gaagggcctc cagcttggct gcagcgtgtc ggatgacgct
     2401 ctgggcgcct gggttggcga cgccgcccgg atacgtcagg tcctgatgaa cctggtttcc
     2461 aacgccgtga agttcaccga cgccggaagg gtcgacatgg acgtcacgcg cctgccggcc
     2521 gggctggcga tcacggtgac cgacaccggg gtcggcatgg ccgaagctga catccccaag
     2581 ctgttcaaca agttctcgca ggtcgactcg tcggcgacgc ggcgcttttc gggcacgggc
     2641 ctgggtttgg cgatcacgcg ggagatcgtc gatctcatgg cgggccagat cagcgtcgaa
     2701 agcgtcttgg gcgccggctc aagttttcgg gtggtcctgc ctttgcccaa gctcgaccgc
     2761 gccacgccgg ccgagcctgt cgccgccgcc tcgaaggctc cggaggcgtc aggcgaccgg
     2821 ccgctccgga tcctcgccgc ggaggacaat cccaccaatc aacgggtgct ggcggccctg
     2881 ctgaagaccc tggacgcgga gctgacc
//
LOCUS       DATAJL010000546         4025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35427,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000546 DATAJL010000000
VERSION     DATAJL010000546.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4025
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35427"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..719
                     /locus_tag="VHN39_10430"
     CDS             <1..719
                     /locus_tag="VHN39_10430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HEX2816804.1"
                     /translation="HYWPTPNGKKVTILLEELGVPYKIVPVHIGRGDQFTGDFLKISP
                     NNRMPALVDTEPTGGGEPISVFESGAIMMYLAEKEGRFWPQDRRGKYEVTQWVMWQMA
                     NQGPKTGERGHFSRVPPEMGDQSYAQRRFADETHRLYGVLNNRLYDRKYLAGDDYSIA
                     DMISYPWTASWKLQGIDLDEFKYFKRWFEELSARPAVEKGMAVTAGLPVEDPASLSPE
                     EQARRRKLLYNQRARPAPAA"
     gene            721..1737
                     /locus_tag="VHN39_10435"
     CDS             721..1737
                     /locus_tag="VHN39_10435"
                     /inference="COORDINATES: protein motif:HMM:NF025587.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein"
                     /protein_id="HEX2816805.1"
                     /translation="MSERLPIIDMAALSDPGDAAGRAGAAEEIARACRAHGFFYLVGH
                     GIGPDVLDALETESRRFFALPIEARMAISMARGGRAWRGYFPVGGELTSGRPDLKEGL
                     YLGTELGPDHPRVRAGVPMHGANLWPAELPGLKAAASAYMDGATRAAAVLMEGVSLSL
                     GLDALYFARAYTAEPTVLFRIFHYPATGSADIDWSQSWGVGEHTDYGLLTLLAQDRHG
                     GLQVKAPGGWIEAPPIEGALVCNIGDMLERLTGGRFKSTPHRVRNVSGHDRLSFPLFF
                     DPDFMAPMQPLPAVATDAALRDADKAERWDRSSVHEFEGTYGDYLLDKVAKVFPQLKE
                     AALG"
     gene            1922..2647
                     /locus_tag="VHN39_10440"
     CDS             1922..2647
                     /locus_tag="VHN39_10440"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816806.1"
                     /translation="MKRAVWRGHNMRNLGLGAAAATAALLLASSAMASTVFISADHLA
                     TSAYTTTLGGTVDGAPFNLGVYESPDILTASFDGGPSEQLLVFCVDIFHFFDPAHTPP
                     ITYQTGPLTTDSSGAQSGTGVPLTPLISGEIGFLASLYETNNSADALAGIQGAIWLTE
                     YTGLTLSGGSSQVAHFQALGSAWAATHADNTTFADAIYSVRGQNQGFVIGGQVPEPAS
                     WALMIAGFGLAGAMLRRRRPLAA"
     gene            complement(2707..3816)
                     /locus_tag="VHN39_10445"
     CDS             complement(2707..3816)
                     /locus_tag="VHN39_10445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004024 - alcohol dehydrogenase activity,
                     zinc-dependent [Evidence IEA];
                     GO_function: GO:0051903 - S-(hydroxymethyl)glutathione
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006113 - fermentation [Evidence IEA];
                     GO_process: GO:0009404 - toxin metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase/class
                     III alcohol dehydrogenase"
                     /protein_id="HEX2816807.1"
                     /translation="MKTRAAVAFEAKRPLEIVELDLEGPRAGEVLVEIKATGICHTDA
                     YTLDGLDSEGLFPSILGHEGAGVVVEVGPGVTSVKPGDHVIPLYTPECRQCKSCLSGK
                     TNLCTAIRSTQGQGVMPDGTSRFSLKGKKIHHYMGCSTFSNFTVLPEIAVAKIRTDAP
                     FDKACYIGCGVTTGVGAVVNTAGVEPGANVVVFGLGGIGLNVIQGAQMVGASMIVGVD
                     INPAREDWGRRFGMTHFVNPKTIGEDVVAHLVKLTDGGADYTFDCTGNTEVMRQALEA
                     CHRGWGESVIIGVAEAGKEIATRPFQLVTGRVWKGTAFGGARGRTDVPKIVDWYMDGK
                     IQIDPMITHTMPLERINEAFDLMHAGESIRSVVVY"
BASE COUNT          649 a         1422 c         1272 g          682 t
ORIGIN      
        1 tccactactg gcccacgccg aacggcaaga aggtgacgat cctcctggaa gagttgggcg
       61 tcccctacaa gatcgtgccg gtgcacatcg gccgaggcga ccagttcacc ggggatttcc
      121 tcaagatcag ccccaacaac cggatgccgg cgctggtcga caccgagccc accggcggcg
      181 gggagccgat cagcgttttc gagtccggcg cgatcatgat gtacctggcc gagaaggagg
      241 gccgcttctg gccgcaggat aggcgcggca agtacgaggt cacccagtgg gtcatgtggc
      301 agatggccaa ccagggcccc aagaccggcg agcgcggcca cttcagccgc gtgccgcctg
      361 agatgggcga ccaatcctac gcccaacgcc gcttcgccga cgagacccac cgcctctatg
      421 gcgtgctcaa caaccgcctc tacgaccgca aatatctcgc cggcgacgac tattcgatcg
      481 ccgacatgat ctcctatccc tggaccgcca gctggaagct gcagggcatc gacctggacg
      541 agttcaaata cttcaagcgc tggttcgagg agctttccgc gaggccggcg gtcgaaaagg
      601 gcatggcggt cacagccggc cttcccgtcg aagacccggc cagcctgtcg cccgaggaac
      661 aggcccgacg ccgcaagctg ctctacaacc agcgcgcccg tcccgcgccc gcggcctgag
      721 gtgagcgagc gcctgccgat catcgacatg gcggccttgt ccgaccccgg cgacgccgcc
      781 ggccgggccg gagccgccga ggagatcgcg cgggcctgcc gggcgcacgg cttcttctac
      841 ctggtcggcc acggcatcgg cccagatgtg ctggacgccc tggagaccga gagccgccgg
      901 tttttcgccc tgccgatcga ggccaggatg gcgatctcca tggccagggg cggccgcgcc
      961 tggcgcggct acttcccggt gggcggcgag ctcacctccg gccgcccgga cctgaaggaa
     1021 ggcctctacc tcgggaccga gctcgggccc gaccatccgc gcgtgcgggc aggcgtcccc
     1081 atgcatggcg ccaatctctg gccagccgag ctgcccggcc tcaaggccgc cgccagcgcc
     1141 tatatggacg gcgcgacccg ggccgcggcg gtgttgatgg agggcgtctc gctgagcctc
     1201 ggtctcgacg ccctgtattt cgcccgcgcc tacaccgccg agccgacggt cctgttccgc
     1261 atcttccact atccggcgac cggctcggcc gatatcgact ggagccagtc ctggggagtc
     1321 ggcgagcaca cggactatgg cctcctgacg ctcctggccc aggaccggca cggcggcctg
     1381 caggtcaagg cgcccggcgg ctggatcgag gccccgccga tcgagggcgc gctcgtctgc
     1441 aatatcggcg acatgctgga gcggctgacc ggcggccggt tcaaatcgac gccgcaccgg
     1501 gtccgcaacg tcagcggcca cgaccgcctc tccttcccac tgttcttcga tccggacttc
     1561 atggcgccca tgcagcccct gcccgccgtc gccacggacg cggcgctgcg ggacgccgac
     1621 aaagccgaac gctgggatcg ctcatctgtc cacgagttcg aggggaccta cggtgactac
     1681 ctgctggaca aggtcgccaa ggtcttcccg cagctcaagg aggccgcgct gggataggcc
     1741 gcgcagttga acctggatcg tcgcggcttc aatgacggca tgctcttgtc ccgagtttgc
     1801 aactgcagcg attgtcagcg cgcgctcagc ccgatcatgc taccccagat ggttaaatac
     1861 gccccttaag agagctcgct gtttcccgcc gcataacgcg atatggttaa cggtcgtcgg
     1921 catgaagcgc gccgtttgga ggggtcataa catgcgaaat ctgggtttag gcgcggctgc
     1981 ggcgaccgcg gcgcttcttc tggcgtcgtc ggcgatggcc agcaccgtct tcatcagcgc
     2041 cgatcacctc gcgacctccg cctacaccac caccctcggc ggcacggttg acggcgcgcc
     2101 cttcaacctc ggcgtctatg agtcgccaga catcctgacc gccagctttg atggcggccc
     2161 gtctgagcag cttctggtct tctgcgtcga tattttccac tttttcgacc cagcccacac
     2221 gccgcccatc acctatcaga caggaccgct gaccacagat tcgagcggcg cgcagtcggg
     2281 tacgggggtc ccgctgacgc cgctgatttc cggagagatc ggctttctgg cgtcgctcta
     2341 tgagacaaac aacagcgccg acgccctggc cggaatccag ggcgcgatct ggctcaccga
     2401 atacaccggc ctgaccctct cgggcggatc ttcccaggtg gctcacttcc aggctctggg
     2461 cagcgcctgg gccgccaccc atgcggacaa cacgaccttc gcggacgcca tctactccgt
     2521 caggggccaa aatcagggct tcgtgatcgg tggacaagtg ccggagccgg cctcctgggc
     2581 gctgatgatc gcgggcttcg gcctagcggg cgcgatgctg cggcgcaggc gcccgctcgc
     2641 agcctagagc gccgtcagaa gcggcgacat tcggcgggcg gaacttcggt tccgcccgtt
     2701 ttcgtttcag tagacgacca cgctcctgat gctctcgccc gcgtgcatca ggtcgaacgc
     2761 ctcgttgatc cgctccagcg gcatggtgtg ggtgatcatc gggtcgatct ggattttgcc
     2821 gtccatgtac caatcgacga tcttcggcac gtcggtgcgg ccccgggcgc cgccaaacgc
     2881 cgtgcctttc cagactcttc ccgtgacaag ttggaatggc ctggtggcga tctccttgcc
     2941 ggcctcggcc acgccgatga tcacgctctc gccccagccg cggtggcagg cctccagcgc
     3001 ctgccgcatg acctctgtgt tgcccgtgca gtcgaaggtg tagtccgccc cgccgtcggt
     3061 gagcttgacc aggtgggcca ccacatcctc gccgatcgtc ttcgggttga cgaaatgggt
     3121 catgccgaac cgccgacccc aatcctcccg cgccggattg atgtcgacgc cgacgatcat
     3181 cgaggcgccc accatttgcg cgccctggat gacgttgagt ccgatgccgc ccaggccgaa
     3241 gaccaccacg ttggcgccag gctccacgcc ggcggtgttg acgaccgcgc ccacccctgt
     3301 ggtcacccca cagccgatgt agcaggcctt atcgaagggg gcgtcggtgc ggatcttcgc
     3361 caccgcgatc tccggcagca ccgtgaagtt cgagaaggtt gagcagccca tgtagtgatg
     3421 gatcttcttg cccttcagcg agaagcgcga ggtgccgtcg ggcatcacgc cctggccctg
     3481 ggtcgaacgg atcgcggtgc agaggttggt cttgcccgac aggcacgact tacattgccg
     3541 gcattcgggt gtgtagagcg ggatcacatg gtcgcccggc ttcacgctgg tgacgcccgg
     3601 ccccacctcg accaccacac ccgcgccttc gtggccgagg atcgagggga acaggccctc
     3661 cgaatccagc ccgtcgagcg tgtaggcgtc ggtgtgacag attccggtgg ccttgatctc
     3721 gaccagcacc tcgccggcgc gggggccttc caggtccagt tcgacgatct ccagcggccg
     3781 cttggcctcg aacgcgacgg cggctcgggt cttcatgggc aggtcctgat gcggggtttg
     3841 cggtggcgat catttcccat gcccacccgc ggttcggcaa cagagacgcg cgcttccgcg
     3901 ttagggccgc atgagtcgac tccagatcgc cgtcgccctc gccgccttga gcctgctggc
     3961 cgccggctgc tccaagccgg cccagaccac atcgacgacc aagaccgccg ccgcggcccc
     4021 ggcgc
//
LOCUS       DATAJL010000547         2573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_48150,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000547 DATAJL010000000
VERSION     DATAJL010000547.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2573
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48150"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..377
                     /locus_tag="VHN39_10450"
     CDS             <1..377
                     /locus_tag="VHN39_10450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEX2816808.1"
                     /translation="LLIGADAALAQRLGADGVHLPERLAHRARWLKAAHPGWIVSAAA
                     HSTSAARRALADGADAVVVSTAFPSRSASAGPPLGAIRLAILVRRAKGAVYALGGIDN
                     KKARLLKDTGLVGLAAVDAFRT"
     gene            complement(382..777)
                     /locus_tag="VHN39_10455"
     CDS             complement(382..777)
                     /locus_tag="VHN39_10455"
                     /inference="COORDINATES: protein motif:HMM:NF044327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816809.1"
                     /translation="MSVRKVALLVATAALFGLAGGAVQAAPAAAATSTKPMDFTVHAE
                     TSPLSGAQVMKWDAAKGHWGVTLNLQQPEARAATANDIQAGAYYRITPSLRVGGSLAF
                     GEQQIVPGPKPNPADAGQPRVQLETKFKF"
     gene            1090..1542
                     /locus_tag="VHN39_10460"
     CDS             1090..1542
                     /locus_tag="VHN39_10460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3576 domain-containing protein"
                     /protein_id="HEX2816810.1"
                     /translation="MRGVALSALAVASLGVAGCSTIMHPLGGGNGPKAVSNPDSAAQI
                     GVNGYLWRATLDTLKFMPLASADPYGGVIITEWYINPEVPNERLKCTVYILDARLRAD
                     GLNVAVFKQNKNAAGEWIDAPSANETETQIENSILTRARQLRLSNLKG"
     gene            1630..>2573
                     /locus_tag="VHN39_10465"
     CDS             1630..>2573
                     /locus_tag="VHN39_10465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX2816811.1"
                     /translation="MARYNPKETEPRWRKAWADADAFRAVIDPARPKYYVLEMFPYPS
                     GRLHMGHVRNYALGDVIARFKRARGFSVLHPMGWDAFGLPAENAAMERGIDPRAWTYD
                     NIARMRDELKELGLSIDWSREFATCDLAYYGQQQALFLDLFSRGLVYRKEGMVNWDPV
                     DMTVLANEQVVDGRGWRSGAVVEKRKLNQWFFRITDYADQLTDDLETLDRWPEKVRVM
                     QENWIGRSRGLKFAFGFTGDAPKGFDAGLEVYTTRPDTLFGASFVGVAPDHPLAEMVA
                     ARDPKAAAFIAECKKGGASQAEIDTAEKMGFDTGLKVK"
BASE COUNT          416 a          871 c          874 g          412 t
ORIGIN      
        1 agctcttgat cggcgcggac gccgcgctgg cccagcgcct cggagcagac ggcgttcacc
       61 tgcccgagcg cctggcgcac cgtgcgcgct ggctgaaggc cgcccaccct ggctggatcg
      121 tcagcgccgc ggcgcactcc acgagcgccg cccgccgcgc gctcgccgat ggcgccgatg
      181 cagtggtggt ttcgacggcc ttccccagcc gaagcgcctc ggcgggcccg ccactgggcg
      241 cgatccggtt ggcgatcctg gtgcgtcggg cgaagggcgc cgtctatgcg ctgggcggca
      301 tagacaacaa aaaggcccgc ctcctgaagg atacgggcct ggtcgggctg gcggcggtgg
      361 acgcctttag aacttgagcc gctagaactt gaacttggtc tcgagctgga cgcgcggctg
      421 gccggcgtcg gccgggttcg gcttcgggcc agggacgatc tgctgctcgc cgaaggccag
      481 gctgccgccc acccgcagcg acggggtgat gcggtagtag gcgccggcct ggatgtcgtt
      541 ggcggtggcg gcgcgggcct cgggctgctg caggttcagc gtgacgcccc agtgaccttt
      601 cgccgcgtcc cacttcatga cctgggcgcc cgacagcggc gacgtctccg cgtgcacggt
      661 gaagtccatg ggcttggtgg aggtcgcggc cgccgccggc gcggcctgca cagctccgcc
      721 cgccagcccg aagagggcgg ccgtggcgac cagcaatgcg accttgcgga cggacatgcc
      781 caacatatag cccctgcgcc tcaccttcgc atcccaggat tgctcccgag cggcaaattg
      841 gcggaggtcg attagagaac cgtgaaggcc tgcgtcaaca gccctcgctt ctcaggaggc
      901 gcaatgcgac gaagaacctc ggcgcctgtg gcggcagggc cacgcgattc ctgtttggcg
      961 actgacacgg cgttgttata gagggcgcgg cgcggggcgg cgccgtagcg ctcttccttg
     1021 cgcgacggat atctttggag acggatacat atgccgtttg tgcgcggtac tgggttgcat
     1081 cgccttggga tgcgtggcgt tgcgttgagc gccttggctg tcgcctcgct gggcgtggcc
     1141 ggctgttcga cgatcatgca tccgctcggc ggcggcaatg gcccgaaggc cgtgtcgaac
     1201 cccgattcgg cggcgcagat cggggtgaac ggctatctct ggcgcgccac gctggacacg
     1261 ctgaaattca tgcccctggc ctcggccgac ccctatggcg gcgtgatcat caccgagtgg
     1321 tacatcaacc cggaggtccc gaacgagcgc ctgaaatgca ccgtctacat cctggacgcg
     1381 cgcctgcgcg ccgacgggct gaacgtggcg gtgttcaagc agaacaagaa cgcggccggc
     1441 gaatggatcg acgccccctc ggccaacgag accgagaccc agatcgaaaa ctccatcctg
     1501 acccgcgcgc gccagcttcg actttcgaac ctcaagggct gatcccagcc ctctgaccgc
     1561 tcgcgagtcg gcgcatctcc tgaagaggcg ttgaccggac ctccaactcc agtccaaagc
     1621 ctccctaaga tggcccgcta caaccccaaa gagaccgagc cccggtggcg caaggcctgg
     1681 gcggacgccg acgccttccg cgcggtgatc gatcccgccc ggcccaagta ctacgtgctg
     1741 gagatgttcc cctatccgtc gggacgcctg cacatgggcc atgtgcgcaa ctatgcgctc
     1801 ggcgacgtga tcgcccgctt caagcgcgcc cggggcttct ccgtcctgca ccccatgggc
     1861 tgggacgcct tcggcctccc cgccgagaac gccgcaatgg agcgcggcat cgaccccagg
     1921 gcctggacct acgataacat cgcccggatg cgcgacgagc tgaaggagtt gggcctgtcg
     1981 atcgactggt cccgcgagtt cgccacctgt gatctcgcct actacggcca gcagcaggcg
     2041 ctgttcctgg acctgttctc ccgcggtctc gtctaccgca aggagggcat ggtcaactgg
     2101 gatccggtgg acatgaccgt cttggccaac gagcaggtgg tcgatggccg cggctggcgc
     2161 tcgggcgcgg tggtcgagaa gcgcaagctg aaccagtggt tcttccgcat caccgactac
     2221 gccgaccagc tgaccgacga cctggagaca ctggaccgct ggcccgagaa ggtccgcgtc
     2281 atgcaggaga actggatcgg ccgttccagg ggcctgaaat tcgccttcgg gttcacgggc
     2341 gacgcgccca aggggttcga tgcggggctg gaggtctaca ccacgcggcc cgacacgctg
     2401 ttcggggcga gcttcgtggg cgtcgcgccg gatcacccgc tggccgagat ggtcgccgcc
     2461 cgcgatccca aggccgcggc gttcatcgcc gagtgcaaga agggcggcgc cagccaggcc
     2521 gagatcgaca ccgccgagaa gatgggtttc gacaccggcc tgaaggtcaa aca
//
LOCUS       DATAJL010000548         5295 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59429,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000548 DATAJL010000000
VERSION     DATAJL010000548.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5295
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59429"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VHN39_10470"
     CDS             <1..318
                     /locus_tag="VHN39_10470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEX2816812.1"
                     /translation="DVQTVFADNLCIECDACEDICPVDCITFTKETDEGDLRTRLKAP
                     ALNLEQDLYVSGALATGRVMVKDEDVCLHCGLCAERCPTGAWDMQRFTLEMTHAGAAC
                     QSR"
     gene            330..2165
                     /locus_tag="VHN39_10475"
     CDS             330..2165
                     /locus_tag="VHN39_10475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEX2816813.1"
                     /translation="MKTGGGKSGAVINDFVVKFANVNGSGSASANGMFAKSILRMGVP
                     VAARNIFPSNIQGLPTWFEVRITEAGHLGRRGGVDLMVAMNPQTWDKDVAEIEAGGYL
                     FYDSTKPLPPGRFRDDITVLGVPLTAMCNDRYQLPRERQLFKNIVYVGALAALLNIDP
                     KVIELLLAEQFSGRQKLIDANVEALHMGVDYVRANLQPLRLQVKKADKVGDRIYVEGN
                     AAAALGAVYGGATVCAWYPITPSTSLAEAFTGYCEALRTDPDGKARYAIVQAEDEIAS
                     IGIVVGAGWNGARAFTCTSGPGISLMTEFIGLSYFAEIPAVIFDVQRGGPSTGMPTRT
                     QQADLIGAAYASHGDTKHPMLLPADPGECFEMGSLAFDLADRLQTTIFVMLDLDIGMN
                     EWLTAPFAWDDKRSLDRGKVMTHDELEAGADFGRYKDVDGDGIPYRTYPGVHPNKGAY
                     FTRGTSRNPYARYSEEGSVYVDNMQRLLRKFETAKAMMPAPVARPAKRRTTDGVIYFG
                     STTPSMHEALDALEGQGRHIDALRVRGFPFCDEVYDFVAQHERVFVVEQNRDAQLRTL
                     LVNEGEIDPGKLVPVLHYDGTPITARFIAGEIGQMLALGQIEAAE"
     gene            2162..3217
                     /locus_tag="VHN39_10480"
     CDS             2162..3217
                     /locus_tag="VHN39_10480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEX2816814.1"
                     /translation="MTYILKPQLHHPNLPTNARGFTRRDYEGSVSTLCAGCGHDSISS
                     AIIQAAFELDLPPHRIAKLSGIGCSSKTPDYFMGASHGFNTVHGRMPSVLTGANLANK
                     DLIYLGVSGDGDSASIGLGQFAHAVRRGVNMLYIVENNGVYGLTKGQFSATSDKGSKS
                     KKGVVNHDAGIDLVGLALQLGATYVGRSFSGDKEQLVPLIKAGLSHKGAAFIDVISPC
                     VQFNNHVGSTKSFDYVREHNEAVNRLDMIPARSPIHVDYQPGETVMVTQHDGSVLSLH
                     KLAELYDPSDRAAALGYLQSKQAQGEIVTGLLYVDPDSSDLHEALETVDTPLNELSDA
                     ALVPGAKALDAINASLR"
     regulatory      3247..3440
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00080"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="yybP-ykoY riboswitch is a manganese riboswitch that
                     directly binds Mn; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="manganese"
                     /db_xref="RFAM:RF00080"
     gene            3452..4459
                     /locus_tag="VHN39_10485"
     CDS             3452..4459
                     /locus_tag="VHN39_10485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:calcium antiporter"
                     /protein_id="HEX2816815.1"
                     /translation="MNPLIVTVGLLLGSAVVIYLACEVFVNGVEWVGRKFAVGQQATG
                     SILAAFGTALPESVVTFVAVVFGATAAQKSIGIGAALGGPLVLSTIAYATVGVVLILC
                     RARLPKTAAIRADFKGLSRDQGWFLVIFAAKIGLGVVAFAWKPWLGALFLAAYGAYFW
                     KEMRGEGVEEDHELEPLKFMPRIATPPTWAAVAQTMVALVVIFAASHLFVKQLDALGP
                     ALGIKPQLLALLLSPIATELPETLNAIIWVRQGKHRLALANISGAMMIQATVPTAFGL
                     FFTPWILDRSLLVGAGVTAIAVAAMFTAFRRGFISRAFLAAMAGFYVLFGAIVLAFHL
                     T"
     gene            complement(4466..>5295)
                     /gene="purM"
                     /locus_tag="VHN39_10490"
     CDS             complement(4466..>5295)
                     /gene="purM"
                     /locus_tag="VHN39_10490"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEX2816816.1"
                     /translation="VKIAIETGLHAGIGIDLVAMSVNDLVVQGAEPLFFLDYFACGKL
                     DPEAAAAIVAGIAEGCRESGCALIGGETAEMPGMYAEGDYDMAGFCVGAVDRDKVLPR
                     MGDQKAGDILVGLGSSGPHSNGYSLVRRIVERSGLAWDAPAPFEPILSGEGGKTLAQA
                     LLAPTRIYVKTVLPHLKAGRIEGLAHITGGGLIENPPRAIAEGLVARFDWNAWLLPPV
                     FAWMQDVGGVSDQELRRTFNCGVGLMLIVDPRDLAEVLEGLVRAGEDAFVIGELAKA"
BASE COUNT          884 a         1775 c         1760 g          876 t
ORIGIN      
        1 gacgtccaga cggtattcgc cgacaacctc tgcatcgaat gcgacgcctg cgaggacatc
       61 tgtccggtcg actgcatcac cttcaccaag gagaccgatg agggggacct gcgcacacgg
      121 ctgaaggcgc cggcgctgaa cctcgagcag gacctctatg tctccggcgc gctggcgacc
      181 ggtcgcgtga tggtcaagga cgaggacgtc tgcctgcact gcgggctctg cgccgagcgc
      241 tgcccgaccg gcgcctggga tatgcagcgc ttcaccctgg agatgacgca cgcgggggcg
      301 gcatgtcagt cccggtaaag gatgaggcag tgaagactgg cgggggaaaa tccggggcgg
      361 tgatcaacga cttcgtggtc aagttcgcca atgtgaacgg atccggctcg gccagcgcca
      421 acggcatgtt cgccaagtcg atcctgcgga tgggcgtgcc ggtggcggcg cgtaacatct
      481 tcccctcgaa catccagggc ctgccgacct ggttcgaggt caggattacc gaagcgggcc
      541 atctgggccg caggggcggg gtcgacctga tggtcgccat gaacccgcag acctgggaca
      601 aggacgtggc cgagatcgag gcgggcggct acctcttcta cgactcgacc aagccgctgc
      661 cgccgggcag gttccgcgac gacatcacgg tcctgggcgt acccctgacg gccatgtgca
      721 atgaccgtta ccaactcccg cgcgaacgcc agctcttcaa aaacatcgtc tatgtcggcg
      781 cgctcgccgc gctgctgaac atcgacccca aggtgatcga gctgctgctg gccgaacagt
      841 tctccggccg tcagaagctg atcgacgcca atgtcgaggc cctgcacatg ggcgtcgact
      901 atgtgcgggc caatctgcag ccgctgcgcc tgcaggtgaa gaaggcggac aaggtcggcg
      961 acaggattta cgtcgagggc aatgcggcgg cggctctcgg cgcggtctac ggcggggcca
     1021 ccgtctgcgc ctggtatccg atcacgccgt cgacgtcgct ggccgaggcc ttcaccggct
     1081 attgcgaggc gctgaggacc gacccggacg gcaaagcccg ctacgccatc gtccaggccg
     1141 aggacgagat cgcctccatc ggcatcgtgg tgggcgcggg ctggaatggc gccagggcct
     1201 tcacctgcac atcggggccc ggcatctcgc tgatgaccga gttcatcggg ctctcctatt
     1261 tcgccgaaat tccggcggtg attttcgacg ttcaacgggg cggcccgtcg accggcatgc
     1321 cgacgcgcac ccaacaggcc gatctgatcg gcgccgccta cgccagccat ggcgacacca
     1381 agcatccgat gctgctgccc gccgatcccg gtgaatgttt cgagatgggg tcgctggcct
     1441 tcgacctggc cgaccggctg cagaccacga tcttcgtcat gctcgacctc gacatcggca
     1501 tgaacgagtg gctgaccgcg cccttcgcct gggacgacaa gcgcagcctg gaccgcggca
     1561 aggtgatgac ccacgacgag ctcgaggcgg gcgccgactt cggccgctac aaagacgtgg
     1621 acggcgacgg catcccctac cgcacctatc cgggcgtgca ccccaacaag ggggcctatt
     1681 tcacccgcgg aacctcgcgc aatccctatg cccgctattc ggaagagggt tcggtctacg
     1741 tcgacaacat gcaacggctg ctgcgcaagt tcgagaccgc caaggccatg atgcccgcgc
     1801 cggtcgcgcg gcccgccaag cgcaggacca cggacggagt catctatttc ggctccacca
     1861 cgccttcgat gcacgaggct ctcgacgccc tggaagggca ggggcgtcac atcgatgcgc
     1921 tgcgcgttcg aggcttcccg ttctgcgacg aggtctacga tttcgtggcc cagcacgagc
     1981 gggtgtttgt ggtggagcag aaccgcgacg cccagcttcg caccctgctg gtcaacgagg
     2041 gcgagatcga tcccggcaaa ctcgtgccgg tgctgcacta tgacgggacg ccgatcaccg
     2101 cgcggttcat cgccggcgag atcgggcaaa tgctggcgct gggtcagatc gaggcggccg
     2161 aatgacctat atcctcaagc cccagctgca tcacccgaac ctgccaacca atgcgcgcgg
     2221 gttcacgcgg cgcgactacg agggctcggt ctcgacgctg tgcgccggat gcggccacga
     2281 ctcgatctct tcagcgatca tccaggcggc cttcgagctc gatctgccgc cgcaccggat
     2341 cgccaagctg tcagggatcg gctgctcgtc caagacgcct gactacttca tgggcgcgag
     2401 ccacggcttc aacaccgtcc acgggcgcat gccctcggtg ctgaccggcg cgaacctggc
     2461 caacaaggac ctcatctacc tgggtgtttc cggggacggc gatagcgcct ccatcggcct
     2521 cggccagttc gcccatgccg tgcggcgcgg cgtcaacatg ctctacatcg tcgagaacaa
     2581 cggcgtttac ggcctgacca agggccagtt ctcggccacc tccgacaagg gctcgaaatc
     2641 caagaagggt gtggtcaacc acgacgccgg catcgatctg gtgggcctgg cgctccagct
     2701 cggcgccacc tacgtcggcc gttcgttctc cggcgacaag gagcagctgg tcccgctgat
     2761 caaggctggc ctcagccaca agggcgcggc tttcatcgac gtcatcagcc cctgcgtgca
     2821 attcaacaac cacgtgggct ccaccaagag cttcgactat gtgcgcgaac acaacgaggc
     2881 ggtgaaccgg ctggacatga tcccggcgcg ctcgccgatc catgtggact atcagccggg
     2941 cgagacggtg atggtcaccc agcacgacgg ttcggtgctc tcgctgcaca agctggcgga
     3001 actctacgac cccagcgacc gcgccgcggc gctgggctat ctgcagtcga agcaggccca
     3061 gggcgagatc gtcaccggcc tgctctacgt cgaccccgac tcgagcgacc tgcacgaggc
     3121 gctggaaacg gtggacacgc cgctgaacga gctgtccgac gccgccctgg tgccgggcgc
     3181 caaggcgctg gacgcgatca acgccagcct gcgctagctt gtccgttgac ccgccgcggc
     3241 ggggcgccta agaccgttcc actctttggg gagtagccgg cctcgtatcc agaggcgccc
     3301 gcgtcaacat acctggcccc gatacgtctt gggcgccatg gcgcgggcag tccgtaggac
     3361 ctggcgagac caatgggttc ggcgttcgtc ctgggttggg cgagggtgcc gatcccttgg
     3421 ctcgtgcgcc cgacccctga agcgatcccc gatgaaccca ttgatcgtga ccgttggcct
     3481 gctgctcggc tccgccgtgg tgatctacct ggcctgcgag gtcttcgtga acggcgtcga
     3541 gtgggtgggc cgcaagttcg cggtgggcca acaggcgacg ggctcgatcc tggcggcctt
     3601 cggcacggcc ctgccggaga gcgtcgtgac cttcgtggcc gtggtgttcg gcgcgacggc
     3661 ggcccagaag tcgatcggca tcggggcggc gctgggcggg ccgctggtgc tctcgaccat
     3721 cgcctacgcg acggtgggcg tggtgctgat cctctgccgc gccagactgc cgaagacggc
     3781 ggcgatccga gcggacttca agggcctcag ccgcgaccag ggctggttcc tggtgatctt
     3841 cgccgcgaag atcgggctgg gcgtcgtggc ctttgcctgg aagccgtggc tcggcgcgct
     3901 cttcctggcg gcctacggcg cctacttctg gaaggagatg cgcggagagg gtgtcgagga
     3961 ggaccatgaa ctcgagcctc tgaagttcat gccgcggatc gcgacgcctc cgacctgggc
     4021 ggcggtggcg cagacgatgg tggcgttggt cgtgatcttc gccgcctcgc acctgttcgt
     4081 gaaacagctc gatgcgctcg gcccggcgct ggggatcaag ccgcagctgc tcgccttgct
     4141 gctcagcccc atcgccaccg agctgccgga gacgctgaac gccatcatct gggtcaggca
     4201 gggcaagcac cgcctggcgt tggccaacat ctccggcgcc atgatgatcc aggcgacggt
     4261 gcccaccgcc ttcggcctct tcttcacgcc ctggatcctg gacaggtcac tgctggtggg
     4321 cgcgggcgtg acggccatag cggtcgccgc gatgttcacg gccttccgac gcggcttcat
     4381 ctcgcgggcc tttttggcgg cgatggccgg gttctacgtc ctcttcggcg cgatcgtgct
     4441 cgcgttccac ctcacctgag gtggctcaag ccttggccag ctcgccgatg acgaaggcgt
     4501 cttcgccggc gcggaccagg ccttccaaca cctccgcaag gtcccgcgga tcgacgatca
     4561 gcatcaggcc gacgccgcag ttgaaggtgc ggcgcagttc ctggtcggag acgccgccca
     4621 cgtcctgcat ccaggcgaag accgggggca gaagccaggc gttccagtcg aaccgggcga
     4681 cgaggccctc ggcgatggct ctgggcgggt tctcgatcag cccaccgccg gtgatgtggg
     4741 ccaggccctc gatgcggccg gccttcaggt gcggcaggac ggtcttcaca taaatccgcg
     4801 tgggggcgag cagggcctgg gcgagggtct tgcccccttc gccagaaaga atcggctcga
     4861 agggcgcggg ggcgtcccag gccaggcccg agcgctcgac aatgcggcgg accagggaat
     4921 agccgttgga gtgcgggcct gaggacccga ggcccaccag gatgtcgccc gccttctggt
     4981 cgcccatccg gggcaggacc ttgtcgcggt cgacagcgcc gacgcagaag ccggccatgt
     5041 cgtagtcgcc ctcggcgtac atgcccggca tctcggcggt ctcgccgccg atcagcgcgc
     5101 agccggattc ccggcagcct tcggcgatgc cggcgacgat ggcggcggcg gcttccggat
     5161 cgagtttgcc gcaggcaaaa taatccagaa agaacagcgg ttcggcgccc tgcaccacga
     5221 gatcgttgac cgacatcgcg accagatcga tcccgatgcc ggcgtgcagg ccggtctcga
     5281 tggcaatctt gacct
//
LOCUS       DATAJL010000549         1574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59445,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000549 DATAJL010000000
VERSION     DATAJL010000549.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59445"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            568..>1574
                     /locus_tag="VHN39_10495"
     CDS             568..>1574
                     /locus_tag="VHN39_10495"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013700.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEX2816817.1"
                     /translation="MLLQGFTVVNQGEAPIKLDEIDISMLAKGQMVDNRVLDAAALDR
                     WAGNGPPIQGVIAKYPPEYCGGDIVPVGVVLGGPVLQRNQGMIVAQEVFAYDRPRDEL
                     RVSVRGTSGGHAVTASASIPIVAGFAKNRFVFPLSGVWYVGEAPGFHSAHRIHPGEEF
                     ALDIGQLGEGARTYRGDGLSFRDYYAYGASVLAAADGRVVRTHNGQAENPGALQRPGE
                     TSDAYLARHAAELDKGMASTDPNWAAGNYVMIDHGGGEYSLYAHLQPGSVRVKVGDQV
                     RAGAVLGKLGSSGNSSEPHLHFQVCDRPDPFLCAGIPVAFENLTILWADGPRALQSGD
                     IV"
BASE COUNT          269 a          505 c          525 g          275 t
ORIGIN      
        1 cgaggcaact ggccgtcgga aaggcgccgt ggcgcccgag ggtgacgacg ctgatgacgt
       61 cgcggtcgta ctgagacgcc gcgtcatgct gtgcgaacgc cggcgctgcg gccagcgcaa
      121 gcggggcaat ggcgagcaac agaaattggc gcatgttccc tcccaagact gcgcggaaag
      181 atcgccacgc aattgcggcc ctgagattac attcacgccg cacccacctt gagagggacc
      241 tttatgttga tttgcgcccc tggtcgggcc gtacgctaac ctaaatgtcc gctctcgacc
      301 caaagcagac gttcgatggc agccggctga taacggccaa acactgatca gcgcgcactt
      361 gccctcatgg cgtgcgtatt ccaggttgga ggcaacaatc ctgggacaat cctgatgaga
      421 gcggtatggc tgctggccgt ctggagcgcg gccctttgcc tcgcggcccc ggcgtgggcg
      481 cagcagcagt ctcctgtcgc tattcgcttt tgtcccacgg gccagcttcg aacctatccg
      541 ctggatgcga aggggcggat gcaggggatg ttgctccagg gattcacggt cgtcaatcaa
      601 ggcgaagcgc cgatcaagct tgatgagatc gacatctcca tgctcgccaa ggggcagatg
      661 gtcgacaacc gggtgctgga cgccgccgcg ctagaccgct gggctggcaa cggcccgccg
      721 atccagggcg tgatcgcgaa gtacccgccc gagtactgcg gcggcgacat cgttccggtc
      781 ggcgtcgttc tgggcggacc cgtcttgcag cgaaaccagg ggatgatcgt ggcgcaggag
      841 gttttcgcct acgaccggcc ccgtgacgag ttgagggtct cggtgcgcgg aacgtctggc
      901 ggccatgcgg tcacagccag cgcatcgatt ccgatcgtgg cgggcttcgc caagaaccgt
      961 ttcgtcttcc ccttaagtgg cgtctggtat gtcggcgagg ctcctgggtt tcacagcgcc
     1021 caccgcatcc accccggtga ggagttcgcg ctggacattg gccagctcgg cgaaggcgct
     1081 cggacctacc ggggcgacgg tctgagtttc cgcgactact acgcctacgg cgcgtccgtg
     1141 ctggccgcgg ccgacgggcg cgtcgtgcgc acccacaacg gccaggccga gaaccccggt
     1201 gcgttgcagc gaccgggcga gacgtcggac gcctacctgg cccggcacgc cgcagagctg
     1261 gacaagggga tggcgtccac cgacccgaac tgggcggcgg ggaactacgt gatgatcgac
     1321 cacggcggcg gcgaatattc gctctacgcg cacctccagc ccggcagcgt aagggtgaag
     1381 gttggcgatc aggttcgcgc gggcgccgtg ctcggcaagc tggggtcgtc tggcaattcc
     1441 agcgagcctc acctccattt ccaggtctgc gaccgccccg atcccttcct gtgcgccggg
     1501 attccggtgg cgtttgaaaa cctgaccatt ctttgggctg acggcccccg cgccctgcaa
     1561 agcggcgaca tcgt
//
LOCUS       DATAJL010000550         4801 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35498,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000550 DATAJL010000000
VERSION     DATAJL010000550.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4801
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35498"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..460
                     /locus_tag="VHN39_10500"
     CDS             <1..460
                     /locus_tag="VHN39_10500"
                     /inference="COORDINATES: protein motif:HMM:NF019819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEX2816818.1"
                     /translation="YGGWYIVATIPNSFERGLVAPYDVYSKRPDGDIREDFYTRRGGF
                     GAPLKHYVVHDWVRPGTGNAHWRVQVFWPINLPFLALYVDPQYRYVIYGEANRSLGWI
                     YSRTAVMSEADYQEATSHLAALGYDGSRIRRFIQTPEQIGQPGFWNDKIK"
     gene            complement(466..936)
                     /locus_tag="VHN39_10505"
     CDS             complement(466..936)
                     /locus_tag="VHN39_10505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEX2816819.1"
                     /translation="MGTYRATSEWSLKDGEDFAKGRYSRGHSVVFGSGFEAPGTASHQ
                     IVGAKWSVAGAVDPEEMLVGAISTCHMLSFLHIAREAGFLVAAYRDEAVGEMTKREDG
                     EMWVSKVTLQPQISYQGRQPTPAERGELHEKGHHICFIANSVKTEIVVEEKVAA"
     gene            complement(967..2754)
                     /locus_tag="VHN39_10510"
     CDS             complement(967..2754)
                     /locus_tag="VHN39_10510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase C-terminal
                     domain-containing protein"
                     /protein_id="HEX2816820.1"
                     /translation="MPYQPPVRDYAFLLRDVLELERYANLPAFADASMDTVDQILEEA
                     GRFTAEVLAPLNSIGDKEGCHWAPDNSVTTPKGFKAAYRQLVDAGWPGLGSDPAYGGQ
                     GLPHVVNLAFSEMSSAANMAFSMYPGLTHGAYSAILAAGTDAQKDLYLPKLASFQWGG
                     TMNLTEPQCGTDLGLLRTKAVPQADGTYRISGQKIWISSGEHDLTENIVHLVLARIEG
                     APMGTRGISLFIVPKFIPDADGNPGERNAVKCLGLEEKMGIHGNATCVIAHEEATGWL
                     IGEENRGLSIMFVMMNEARLGVGMQGIAQAEAAYQAAAAFAKDRLQGRSLTGPKNADG
                     PADPIIVHPDVRRMLMDAKAIIEGGRAFLFWTALHGDLAEASPDEAVRQKGHDYMALM
                     TPVLKGFLTDRGFNVCSDAMQVHGGSGFTEHFPVSQYLRDCRIALIYEGTNGIQALDL
                     VGRKLAAEGGRGIMGFFAELDAFIAADEADEGMKPFTEGLARGKAELQEATMWLMQNG
                     LANPDNAGAASTDYMHLFGLVALAYMWAMMAKTSLAKIAGGATDPIYSEKLTVGRYYI
                     ARVLPETAGRLAKLKTGAETLMALPVDSF"
     gene            complement(2815..3294)
                     /locus_tag="VHN39_10515"
     CDS             complement(2815..3294)
                     /locus_tag="VHN39_10515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEX2816821.1"
                     /translation="MPTDLRRPVRTFTIRQLCLEFKCTPRALRFYEDKGLLAPARDGL
                     NRVYSYKDRARLQLILRGKRVGLALAEIGEILDLYEVDDGGAQQAAKSLRKFQERIVA
                     LEGQKVDIDNAIKELKDGCLAMETRLAKTRPDLLPRAADYDQMLRRRLDGVEHSEAK"
     gene            3458..>4801
                     /locus_tag="VHN39_10520"
     CDS             3458..>4801
                     /locus_tag="VHN39_10520"
                     /inference="COORDINATES: protein motif:HMM:NF028457.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5117 domain-containing protein"
                     /protein_id="HEX2816822.1"
                     /translation="MKSKAFGATVAAAAVLLTAAPALAWADKPAEKAGETSPQKTPDV
                     TAGLTRQDGLLPVYVDKDKGRILVALPPADASGVSGRFLYVTALKTGLGSAPVGLDRA
                     RIGRGEILVFRRLGAKVIAEYENPRFIAPGGSADEQVAAHDAFAVSTVWAGKVEGVTP
                     DGRILVDLSSFLTRDVEDIAGDLQRSGERGYKIVPDLSVADPAAVKVFPLNLEFEARQ
                     TFASDTPGAEVRNIAPDAKLITLTVRHSLIKLPEPGYVPRLFDPRSGGFDSIVYDYSA
                     PLDRDIAVRLAHRFRLEKTDPTKAVSPVKKPIVYYVDRAAPEPVRSALQQGASWWAKA
                     FEAAGFKDAYRVELMPEGADPLDVRYNVINWVDRATRGWSYGQSITDPRTGEIIKGSV
                     LLGSLRVRQDMLIFEGLVGADQDGTGGPSDPVQVSITRLRELAAHEVGHTLGFAHN"
BASE COUNT          737 a         1649 c         1597 g          818 t
ORIGIN      
        1 gtacggcggc tggtacatcg tggccacgat ccccaacagc ttcgagcgcg gactggtcgc
       61 gccctacgac gtctattcca agcgccccga tggcgacatc cgcgaggatt tctacacccg
      121 ccgcggcggg ttcggcgcac cgttgaagca ctacgtcgtc cacgactggg tgcggccggg
      181 gaccggcaac gcgcactggc gggtgcaggt gttctggccg atcaacctgc cgttcctcgc
      241 tctctacgtc gatccgcagt accgctatgt gatctacggc gaggccaacc ggtccctggg
      301 ctggatctac tcgcggaccg cggtgatgtc cgaggcggac tatcaggagg ccaccagcca
      361 cctggcggcc cttggatatg acgggtcgcg gatccgccgg ttcatccaga cgcccgagca
      421 gatcggccag ccggggttct ggaacgacaa gatcaaatag ggcgatcagg ccgccacctt
      481 ctcctccacc acgatctcgg tcttcaccga attggcgatg aagcagatat ggtggccctt
      541 ttcgtgcagc tcgccgcgct cggccggcgt cggctggcgg ccctggtagc tgatctgcgg
      601 ctgcagggtg accttgctca cccacatctc gccgtcctcg cgtttggtca tctcgcccac
      661 ggcctcgtca cgataggccg ccaccaggaa gccggcttcg cgggcgatgt ggaggaagct
      721 cagcatgtgg caggtgctga tcgcgccgac cagcatctcc tccgggtcga ccgcgccggc
      781 caccgaccac ttggcgccca cgatctgatg cgaggcggtg cccggcgcct cgaagcccga
      841 gccgaagacc accgaatggc cgcggctgta gcggcccttg gcgaagtcct caccgtcctt
      901 cagggaccac tccgaggtcg cgcgataggt ccccatcagg aggtcctcct cagcccattc
      961 ttgttgtcag aacgaatcga ccggcagggc catcagggtc tcggcgccgg tcttcagctt
     1021 ggccagccgc cccgccgtct ccggcaggac gcgggcgatg tagtagcggc cgacggtgag
     1081 cttctcggaa tagatcggat cggtggcccc gccggcgatc ttcgctagcg acgtcttcgc
     1141 catcatcgcc cacatgtagg ccagcgccac gaggccgaag aggtgcatgt agtcggtgga
     1201 ggccgcgccg gcgttgtccg ggttcgccag cccgttctgc atcagccaca tggtggcctc
     1261 ctgcagttcg gccttgccgc gcgccaagcc ctcggtgaag ggcttcatgc cctcgtcggc
     1321 ctcgtcggcc gcgatgaagg cgtcgagctc ggcgaagaag cccatgatcc cgcggccacc
     1381 ctcggcggcc agcttgcggc ccaccagatc cagggcctgg atgccgttgg tgccctcgta
     1441 gatcagcgcg atgcggcaat cgcgcaggta ctggctgacc gggaagtgct cggtgaaacc
     1501 ggacccgccg tgcacctgca tggcgtcgga acagacgttg aaaccccggt cggtcaggaa
     1561 gcccttcagc accggggtca tcagcgccat gtagtcgtgg cccttctggc gcacagcctc
     1621 gtcgggactg gcttcggcga gatccccgtg caaggcggtc cagaacagga aggcccggcc
     1681 cccttcgatg atcgccttgg cgtccatcag catgcggcgc acgtccgggt ggacgatgat
     1741 cgggtcagcc ggtccgtcgg cattcttcgg cccggtcagc gagcggccct gcaggcggtc
     1801 cttggcgaag gcggcggcgg cctgataggc ggcctccgcc tgggcgatcc cctgcatgcc
     1861 gacgccgagc ctggcctcgt tcatcatcac gaacatgatc gagaggcccc gattctcctc
     1921 gccgatcagc cagccggtcg cctcctcgtg ggcgatcacg caggtggcgt tgccgtggat
     1981 gcccatcttc tcttccaggc ccaggcactt gaccgcgttc cgctcgccgg gattgccgtc
     2041 cgcatcgggg atgaacttgg gcacgatgaa caggctgatt ccgcgggtcc ccatcggcgc
     2101 gccctcgatg cgggccagca ccaggtggac gatgttctcg gtgaggtcgt gctcgccgct
     2161 ggaaatccag attttttggc ccgagattct gtaggtcccg tccgcctgcg ggaccgcctt
     2221 ggtgcgcagg aggccgaggt ccgtgccgca ctgtggctcg gtcaggttca tggtcccgcc
     2281 ccactggaac gaggcgagct tgggcaggta gaggtccttc tgcgcgtccg tgccggcggc
     2341 caggatcgcg gaataggcgc cgtgggtcag gcccgggtac atggagaagg ccatgttggc
     2401 cgccgagctc atctcggaga aagccaggtt gaccacatgc ggcagcccct gaccgccata
     2461 ggccgggtcg gacccgaggc ccggccagcc ggcgtcgacg agctggcggt aggccgcctt
     2521 gaatcccttg ggcgtggtca ccgaattgtc gggcgcccag tggcagccct ccttgtcacc
     2581 gatgctgttc agaggcgcga gcacctcggc ggtgaaccgg ccggcctcct cgaggatctg
     2641 gtcgacggtg tccatggagg catcggcgaa ggccggaaga ttggcgtagc gctcaagctc
     2701 caggacatcg cgcagcagaa aggcgtagtc gcggacgggc ggctgatagg gcatggcggt
     2761 actccggtcg cgaacgcttt taagcgaact ggagcgtgcg gtcagccgtc cagcttattt
     2821 ggcttcgctg tgctccacgc cgtcgagccg gcggcgcagc atctgatcgt agtcggcggc
     2881 gcggggcagc aggtcggggc gggtcttggc caggcgggtt tccatggcca ggcagccgtc
     2941 cttcagctcc ttgatggcgt tgtcgatatc gaccttctgg ccttctaggg cgacgatgcg
     3001 ctcctggaat ttgcgaaggg atttggccgc ctgctgggcg ccgccgtcgt cgacctcata
     3061 gaggtcgaga atctcgccga tctcggccag cgccaggccc acccgcttgc cgcgcaggat
     3121 cagctgcagg cgcgcgcggt ccttgtagga atagacccgg ttcaggccat cgcgggcagg
     3181 cgccagcagg cccttgtctt catagaagcg cagcgccctg ggtgtgcatt tgaactccag
     3241 gcaaagctgg cggatcgtga aggtccggac ggggcggcga aggtcggtgg gcatggcggg
     3301 tcctcgcgag atgcgggttt cgctgacaac gtaaaactac ctttccgttt acgtcaagcc
     3361 ggctgaccca gcgtcgcctg aagatttgcc gcgccggcgt ctggtccggc cgcgtgcgcg
     3421 cctctagtct ggcggcttca gttcggggga tcgacgcgtg aaatccaaag cctttggcgc
     3481 cacggtggcc gccgccgccg tcttgctgac cgccgccccg gccctggcct gggccgacaa
     3541 gcctgccgag aaagctggcg agacctcacc tcaaaagact cccgacgtca ccgccggcct
     3601 tacccgccag gacggcctgc tgcccgtcta tgtggacaag gacaagggcc gcatcctggt
     3661 cgccctgccc ccggcagacg cgtcaggcgt gagcggccgg ttcctctatg tgacggcgct
     3721 caagaccggc ctcggctccg cccccgtcgg cctcgaccgg gcgcggatcg gccgcggcga
     3781 gatcctggtc ttccgccgcc tcggcgccaa ggtgatcgcc gaatacgaga acccccgctt
     3841 catcgccccc ggcggctcgg ccgacgaaca ggtcgcggcg cacgacgcct tcgcggtctc
     3901 caccgtctgg gccggcaagg tcgagggggt cacgccagat ggccgcatcc ttgtggacct
     3961 gtcgagcttc ctgacccgcg atgtcgagga catcgccggc gacctgcaac gctccggcga
     4021 gcggggctac aagatcgtcc ccgacctctc ggtggccgat ccggcggcgg tgaaggtgtt
     4081 cccgctgaac ctcgagttcg aggcccgcca gactttcgcc tccgacacgc cgggcgccga
     4141 ggtccgcaac atcgcccccg acgccaagct gatcacgctg acggtgcgcc acagcctgat
     4201 caagctgccg gagcccggct acgtcccgcg cctgttcgat ccgcgttccg gcggcttcga
     4261 ttccatcgtc tatgactact cagccccgct ggacagggac atcgccgtcc gcctcgccca
     4321 ccgcttccgg ctggagaaga ccgacccgac gaaagccgtc tcgccggtca agaaacccat
     4381 tgtctactac gtcgaccgcg ccgcgccgga gccggtgcgc tcagccctgc agcagggcgc
     4441 ctcctggtgg gccaaggcgt tcgaggcggc gggcttcaag gacgcctacc gcgtggagct
     4501 catgccggag ggcgccgacc cgctggacgt ccgctacaac gtgatcaact gggtggaccg
     4561 cgccacccgc ggctggtcct acggccagtc gatcaccgat ccgcgcaccg gcgagatcat
     4621 caagggctcg gtgctcctgg ggtcgctgcg cgtgcgccag gacatgctga tcttcgaagg
     4681 cctggtcggc gccgaccagg atgggaccgg cgggccgagc gatccggtgc aggtctcgat
     4741 tacccgcctg cgcgagctcg ccgcccacga agtcggccac acgctcggct tcgcgcacaa
     4801 c
//
LOCUS       DATAJL010000551         1642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9543,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000551 DATAJL010000000
VERSION     DATAJL010000551.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9543"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1642)
                     /locus_tag="VHN39_10525"
     CDS             complement(<1..>1642)
                     /locus_tag="VHN39_10525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEX2816823.1"
                     /translation="PAPPAAWPLAKGLGGFWGDALLTGLSGLLAYAHLPLAQPIAAAV
                     FAGLGLVAMAYAIGLRPSELRTLGDWLAVALTPKPKAAVKPERAARVAARNRGEGIPD
                     SALDSAPVTLALDGGPRVKPPKLSSKESPRELREAQSTFEFLKPGGFALPELSMLAKP
                     KPRSAQFDEGALRQNAQLLESVLAEFGVKGAVDQIRPGPVVTLYELVPAAGVKSARVV
                     ALSDDIARSMSVAACRVSVVPGRNAIGIELPNQHRETVYLRDLLASPEYERGGQTLPM
                     ALGETIGGEPYIADLARMPHLLIAGTTGSGKSVGVNAMILSILYRLPPDQCRMIMIDP
                     KMLELSVYDGIPHLLAPVVTDPKKAIVALKWTVREMEDRYRRMPKIGVRNVASYNERA
                     KEAAAKGEHFERTVQTGFDETGRAIYESEKITPEPMPMLVVIIDEVADLMMVAGKEIE
                     GAVQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPTRISFQVTSKIDARTILGEQ
                     GAEQLLGQGDQLYMAGGGRITRLHGPFVSDGEVLRLALP"
BASE COUNT          224 a          536 c          627 g          255 t
ORIGIN      
        1 ggcagggcca gccgcaatac ctctccatcg ctgacgaagg gtccgtgcag gcgggtgatg
       61 cggccgccgc cggccatgta gagctggtcg ccctggccca gcagctgctc ggcgccctgc
      121 tcgcccagga tggtgcgcgc atcgatcttg gaggtgacct ggaagctgat ccgggtcggg
      181 aagttggcct tgatggtgcc ggtgatcacg tccaccgacg ggcgctgggt ggccatgatc
      241 aggtggatgc cggcggcccg cgccatctgc gccaggcgct ggacggcgcc ttcgatctcc
      301 ttgccggcca ccatcatcag gtcggcgacc tcgtcgatga tcaccaccag catgggcatg
      361 ggctcgggcg tgatcttctc gctctcgtag atggcgcggc cggtctcgtc gaaaccggtc
      421 tggacggtgc gctcgaagtg ctcgcccttg gcggccgcct ccttggcgcg ctcgttgtag
      481 gaggcgacgt tgcgcacgcc gatcttcggc atgcggcggt agcggtcctc catctcgcgc
      541 acggtccact tcagtgcgac gatggccttc ttcgggtcgg tgaccacggg cgccaggagg
      601 tgcgggatgc cgtcgtagac gctgagctcc agcatcttcg ggtcgatcat gatcatccgg
      661 cactggtccg gcggcagccg atagaggatc gacaggatca tggcgttgac gccgaccgac
      721 ttgcccgagc cggtggtgcc ggcgatgagc aggtggggca tgcgcgccag gtcggcgata
      781 tagggctcgc cgccgatggt ttcgcccagc gccatgggca gggtctggcc gccgcgctcg
      841 tattcggggc tggccaggag gtcgcgcaga tagaccgtct cgcggtgctg gttgggcagc
      901 tcgatgccga tggcgttgcg gcccggcacc accgagacgc ggcaggcggc cacgctcatg
      961 gagcgggcga tgtcgtcgct gagcgccacc acccgggccg atttcacgcc ggcggcgggg
     1021 accagctcgt agagggtgac cacagggcct ggccggatct ggtccacagc gcccttgacc
     1081 ccgaactcag ccagcacgct ctccagcagc tgggcgttct ggcgcagggc tccctcgtcg
     1141 aactgggcgg agcgcggctt gggcttggcc agcatggaga gctcggggag cgcgaagccg
     1201 cccggcttga ggaattcgaa ggtggactgg gcctcgcgca gctcgcgcgg gctctccttg
     1261 ctcgagagct tcggcggctt cacccgcggc ccgccgtcta gggcgagggt gacgggcgcg
     1321 gaatcgaggg cggaatcggg aatgccctcg ccgcggttgc gggcggccac ccgggcggcg
     1381 cgctccggct tgacggcggc cttgggcttg ggcgtcagcg ccacggcgag ccagtcgccg
     1441 agggtgcgga gttcggaggg ccgcagccca atggcgtagg ccatggcgac gaggcccagg
     1501 cccgcgaaga ccgccgctgc gatcggctgg gcgagcggca ggtgcgcgta ggccagcagg
     1561 ccggagagcc cggtcaggag cgcgtcaccc cagaagccgc ccaggccctt ggcgagcggc
     1621 caggcggcgg gcggggcggg cc
//
LOCUS       DATAJL010000552         3285 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68240,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000552 DATAJL010000000
VERSION     DATAJL010000552.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68240"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VHN39_10530"
     CDS             <1..257
                     /locus_tag="VHN39_10530"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2816824.1"
                     /translation="ELIYIDGSHQAPDVLTDAVLAFQLLRVGGILIFDDYLWSHEGPG
                     QQDFYNMPKPAVDAFVNIFQRRMTVIGAPLRQLYVRKIAP"
     gene            354..992
                     /locus_tag="VHN39_10535"
     CDS             354..992
                     /locus_tag="VHN39_10535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2816825.1"
                     /translation="MSQVAYLNPHLLAGGKREQTKVANRQAILDAAREVFGELGYETA
                     TVRDIIRRTGLAAGTFYNYYRSKEEVFAALADDGARRFAPILKSLRGRGHSFETFVRL
                     AIEAYFGFIADEHKNWAARRPAGEPHLHIQGETPEMAAVFAEIRDALAEDIANRRGPF
                     ADPDYMAAACIAIAREVGDKMLERRPIDTKGAADFAVTMILGGLKGLPKAQA"
     gene            995..2041
                     /locus_tag="VHN39_10540"
     CDS             995..2041
                     /locus_tag="VHN39_10540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816826.1"
                     /translation="MPSPATQRMMVRTLLSLPTSVLRLMSGGGVVYQGGRTLDPRLQY
                     LAAQNRGAPPMSMFTPDEARRGGSATLALVAGGLEPGVRFEAVSIDGPGGMIPARLYR
                     PEVQDAQAPLMVFAHFGGGVIGDLEICHAFCSILAKTGRGPVLSVDYRLAPEHRFPAG
                     LEDVLAAYRWGRDNAERFGAPIAQAAIGGDSMGGNFAAVICQELKTKGEPQPVLQLLI
                     YPWVDVACESASMTTYAEAFPLNRATLDWFAGHYLGPGDSPSDPRLSPLRAADLSGLA
                     PAVVVTAGFDPLLDQGEAYARRLKEAGVPVIYRCYDSLAHAFTAFTGAVPCADVACRE
                     VAGLVREGFEGRIA"
     gene            2041..3021
                     /locus_tag="VHN39_10545"
     CDS             2041..3021
                     /locus_tag="VHN39_10545"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003960 - NADPH:quinone reductase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0070402 - NADPH binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase family protein"
                     /protein_id="HEX2816827.1"
                     /translation="MRALVVERLAADYAGCVVKDIPTPEPGPGEVRIRVRAAAVNFPD
                     LMQTRGDHQHKPQVPFTPGMELAGEVDAIGPGVTAFTPGDPVCGGGRGGMAEFAVLPA
                     AGLRRKPETLSFSQAAGYAVAYLTAYVAFERCARLQAGEWVLVHGAAGGVGLAAVDLA
                     QVMGAKVIAASASDHKLAVIAAEYAPDATVNVTAGFRERVKEITGGRGADVIYDPVGG
                     DVFDESLRCIAFGGRILSIGFTSGRLPVLPVNIALIKGFSVMGVRAGEYGRQFPEKGR
                     ENHEAIWKLAEEGKVKPRVDAEHPLADWRAAFGSLADRKVIGKTIIRPDL"
     gene            3033..>3285
                     /locus_tag="VHN39_10550"
     CDS             3033..>3285
                     /locus_tag="VHN39_10550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEX2816828.1"
                     /translation="MTIGSEDELEKLKLAGRLVANTLKAMGEALEPGITTHELDGIGR
                     RLLEEAGARSAPELTYGFPGATCISVGPDVAHGIPGERRI"
BASE COUNT          483 a         1215 c         1093 g          494 t
ORIGIN      
        1 tcgagctgat ctacatcgac gggtcgcacc aagcgccgga cgtcctgacc gatgcggtgc
       61 tggcctttca actgttgcgg gtcggcggaa tcctgatctt cgacgactac ctttggtccc
      121 acgagggccc gggccagcaa gacttctaca acatgcccaa gccggcggtg gacgcgttcg
      181 tgaacatctt ccagcgcagg atgacggtga tcggcgcgcc gctccgccaa ctctatgtgc
      241 gcaagatcgc accctgatcc gaggcgaacg ctgggggcga ccccagcgtt tgctttccgc
      301 cacgacgccc ttagagtgac gcgcgtcact ttcgagtctg tctgcggagc gccatgtcac
      361 aggtcgccta tctcaatccc catctcctcg cagggggtaa gcgcgaacag accaaggtcg
      421 ccaaccgtca ggcgatcctg gacgccgccc gcgaggtgtt tggagagctg ggctacgaga
      481 ccgccacggt ccgcgacatc atccgccgca ccggcctcgc ggccggcacc ttctataact
      541 actaccgctc caaggaggag gtgttcgcgg ccctcgccga cgacggcgcc cggcgcttcg
      601 ccccgatcct gaaaagcctg cgcggccgcg gccattcctt cgagaccttc gtgcgcctgg
      661 ccatcgaggc ctatttcggg ttcatcgccg acgagcacaa gaactgggcc gcgcgccgtc
      721 cggccggcga gccgcatctg cacatccagg gcgagacgcc ggagatggcc gcggtgttcg
      781 ccgaaatccg cgacgcgctg gccgaggata tcgccaatcg ccgcgggccc ttcgccgacc
      841 cggactatat ggccgcggcc tgcatcgcca tcgcccgcga ggtcggcgac aagatgctgg
      901 agcgccggcc gatcgatacc aagggcgccg cggacttcgc cgtcaccatg atcctcggcg
      961 ggctgaaggg cctgccgaag gcccaggcct gaccatgccc agccccgcca cccagcgcat
     1021 gatggtccgc accctgctga gcttgccgac ctcggtgctg cgcctgatgt cgggcggcgg
     1081 ggtggtctac cagggcggcc gcactctcga tccccggctg cagtacctgg ccgcccagaa
     1141 ccgcggcgcg ccgccgatga gcatgttcac gccggacgag gctcggcgcg gcggctccgc
     1201 cacgctcgcc ctggtggccg gcggcctgga acccggggtc cgcttcgagg ccgtgagcat
     1261 cgatggcccc ggcgggatga tccccgcgcg cctctaccgt ccggaagtcc aggacgcgca
     1321 agcgccgctg atggtcttcg cccactttgg tggcggggtg atcggcgacc tggagatctg
     1381 ccacgccttc tgctcgatcc tggccaagac cggccgcggg cctgtcctct ccgtcgacta
     1441 tcgcctggcg cccgagcacc gcttccccgc gggcctggag gacgtgctgg ccgcctaccg
     1501 ctggggccgc gacaacgccg agcggttcgg cgcacccatc gcccaggccg ccatcggcgg
     1561 cgactccatg ggcggcaatt tcgcggcggt catctgccag gagctgaaga cgaagggcga
     1621 gccgcagccc gtcctgcagc tcctgatcta cccctgggtc gacgtggctt gcgagagcgc
     1681 gtccatgacc acctacgccg aggctttccc gctgaaccgt gcgaccctcg actggttcgc
     1741 gggccactac ctgggccccg gcgacagccc atcggacccg cgcctgtcgc cgctgcgggc
     1801 cgccgacctc tcgggcctcg cgcccgccgt ggtggtcacc gccggcttcg acccgctact
     1861 cgaccagggg gaggcctatg cgcggcgcct caaggaggcc ggcgtgccgg tgatctaccg
     1921 ctgctatgac agcctggccc acgcgttcac cgccttcacg ggcgcggtcc cctgcgccga
     1981 cgtcgcctgc cgcgaagtgg ccggcctggt ccgcgagggc ttcgaaggcc gcatcgcctg
     2041 atgcgggctt tggtcgtcga acggcttgca gccgactacg ccggctgcgt cgtgaaggac
     2101 atccccacgc ccgagccggg ccccggcgag gtccgtatcc gggtccgcgc cgcggccgtg
     2161 aacttccccg acctgatgca gacccgcggc gatcaccagc acaagccgca ggtccccttc
     2221 acgcccggca tggagctggc cggcgaggtg gacgcgatcg gccctggcgt caccgccttt
     2281 acgccaggcg atccggtctg cggcggcggg cgcggcggca tggccgagtt cgccgtcctg
     2341 ccggccgccg gcctgcggcg caaacccgag accctcagct tcagtcaggc ggccggttat
     2401 gcggtcgcct acctgacggc ctatgtcgcc ttcgaacgct gcgcgcgcct gcaggccggc
     2461 gagtgggtgc tggtgcatgg ggcggccggc ggcgtgggcc tggccgccgt cgacctcgcc
     2521 caggtcatgg gcgccaaggt gatcgccgcc tcggcctccg accacaagct cgcggtcatc
     2581 gccgccgaat acgcccccga cgccacggtc aacgtcaccg ccgggttccg ggagcgcgtg
     2641 aaggagatca ccggcggtcg cggcgccgac gtgatctacg acccggtggg cggcgacgtc
     2701 ttcgacgaga gcctgcgctg catcgccttc gggggccgca tcctctccat cggcttcacc
     2761 tccggccgcc tgccggtgct gccggtgaac atcgcgctga tcaagggctt ctcggtgatg
     2821 ggcgtgcgcg ccggcgaata cggccgccag ttccccgaaa agggccgcga gaaccacgaa
     2881 gcgatctgga aactggccga agagggcaag gtgaagcccc gtgtcgacgc cgaacacccc
     2941 ctcgccgact ggcgcgccgc tttcggttcc ctcgccgacc gcaaggtgat cggcaagact
     3001 atcatccggc cggacctcta gaggagacgc ccatgaccat cggcagcgaa gacgaactcg
     3061 aaaagctgaa gctcgccggc cgcttggtcg ccaataccct gaaggccatg ggcgaggccc
     3121 tggagcccgg catcaccacc catgagctgg acggcatcgg gcggcgcctg ctggaggagg
     3181 ccggcgcccg ctccgccccg gagctgacct atggctttcc cggcgccacc tgcatctccg
     3241 tcggcccgga cgtggcccac ggcatcccgg gcgagcggcg gatcg
//
LOCUS       DATAJL010000553         2482 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9584,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000553 DATAJL010000000
VERSION     DATAJL010000553.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9584"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VHN39_10555"
     CDS             complement(<1..210)
                     /locus_tag="VHN39_10555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEX2816829.1"
                     /translation="MAEDPRDWETETRLVRGGLSRSAHGEISEALYLTQSFAYESAQA
                     ADERFAGGPGFIYQRFGNPTTQMFED"
     gene            complement(537..1130)
                     /locus_tag="VHN39_10560"
     CDS             complement(537..1130)
                     /locus_tag="VHN39_10560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816830.1"
                     /translation="MHELTAAAERREEILGELAEWMHAAAREAQRRLLEAETTDDFVK
                     LTASLAKLARGVRQSILIHRKLETERLEAARRADDAAAGAQAGSEFVPRHHKRVRIRT
                     AITRHVWNRLEGVEAELLHEDLNARLDELEGEDDFLDTPIDDLIAQLCRDLGFEPPEP
                     LASPHPAGLPVAAAAQPMAEGAGSARDGPAVHAPNTS"
     gene            complement(1358..2269)
                     /locus_tag="VHN39_10565"
     CDS             complement(1358..2269)
                     /locus_tag="VHN39_10565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX2816831.1"
                     /translation="MNLLAALDALLAEGSVTGAARRLGLSPSAMSRTLARLRSATGDP
                     LLVRAGRGLAPTPRASELRDRVHELTRDVRAVLTPNVSHLDVAMLERTFTIRASEGFL
                     EVFAAAFVAAVTDVAPHVRLRFAPKPGKDAVLLRDGAIDLEIGVLGASAPEVRTRFIF
                     RDDFIGAVRPGHPLLTGPITPERYVAYGHVVASRRGAFTGPVDDALQELGLRREVIAV
                     VPGFPDAMRIALNTDLVVLLPRSCLGPSASNTDPFGQGLVGFDLPVRTPEIVISAMWH
                     PRMDADPAHRWLRDTVLAVCHAAAAPL"
BASE COUNT          426 a          822 c          843 g          391 t
ORIGIN      
        1 gtcctcgaac atctgggtcg tggggttgcc gaagcgctgg tagatgaagc ccggcccgcc
       61 agcgaaccgc tcgtcggcgg cttgcgcgct ctcataggcg aagctctggg tcagatagag
      121 cgcctcggag atctccccat gagccgagcg ggacaagccg ccgcgcacca gacgggtctc
      181 ggtctcccag tcgcgcggat cttcggccat ggcggggctc ctcttcaggg cgccggttga
      241 acggcagggc gcgcgcagcg tcaagccgcg ctttcctgca agcggacgaa gttccgctca
      301 tccccgcgca agcggagatc aggttcgggc gtggcttcac gatcctcctc cccttgtggg
      361 aggaggtggc agccgcaggc tgacggaggt ggggtcacac tccgttcgct gcgcgagact
      421 gagcttcggt gcgcacggaa agtccgagaa accccacctc cgacccgctt cgcaggccac
      481 ctcctcccac agggggagga gggcgcttca agcgccggcc tgaatgtcga ttggccttag
      541 gacgtgttgg gcgcgtggac ggcgggaccg tcgcgcgcgg agcccgcgcc ctccgccatg
      601 ggctgggcgg ccgccgctac cggcaatcca gccggatggg gcgaggcaag gggctcgggc
      661 ggctcgaagc ccaggtcacg gcagagttgg gcgatcaggt cgtcgatggg ggtgtcgagg
      721 aagtcgtcct cgccttccag ctcgtcgagc cgggcgttca gatcttcgtg caacagctcc
      781 gcctcgacgc cctccagcct gttccagaca tggcgggtga tcgcggtgcg gatgcgcacg
      841 cgcttgtggt ggcgcgggac gaactccgag cccgcctgcg cgcccgccgc ggcgtcgtcc
      901 gcccggcgcg ccgcctcgag ccgctcggtc tccagcttgc ggtggatcag gatcgactgg
      961 cgcacgccgc gcgccagctt ggccagcgag gcggtcagct tgacgaagtc gtccgtcgtc
     1021 tcggcctcca gcaaccgccg ctgcgcctcg cgcgcagccg catgcatcca ctcggcgagc
     1081 tcgcccagga tctcctcacg gcgttcagcg gcggcggtga gttcatgcat gaacaaaacg
     1141 agaacattgg tcgaggcagg agtcaagttt tgagtgtggg gggtgggccg acgggtattg
     1201 gcgctgaggc tcaggcgccg cagccagcgt cgcctatgcg ccaggaacag ccggtggttt
     1261 gccgccaaga agctgactcg ccgcaggtcc gctatggggg gaaagcggac ctcagatgga
     1321 tcgactctgg gctgggcgcc gtcctgtccg gacggcttca cagtggtgcc gctgccgcat
     1381 ggcacaccgc cagcacggtg tcgcgcagcc atctgtgcgc cgggtcagcg tccattcggg
     1441 gatgccacat cgccgatatg acgatctctg gcgtacggac ggggagatca aagccaacga
     1501 gaccttgccc gaatgggtca gtgtttgatg cgctggggcc gagacacgag cgaggtaaga
     1561 gcacaactag gtccgtattg agcgcgatgc gcatcgcgtc cgggaacccc gggacgacgg
     1621 cgatgacctc tcgtctgaga ccaagctctt gcagggcgtc atcgacgggc cctgtaaagg
     1681 cccctctgcg cgacgccaca acatgaccgt aggccacata gcgctccggc gtgatcggcc
     1741 ccgtcagtaa gggatgtccg gggcggaccg cgccaatgaa gtcgtcgcgg aagataaacc
     1801 gcgtgcgcac ctccggcgcc gaggcgccaa gcaccccgat ctcaagatcg atcgcgccat
     1861 cacgcagcaa gaccgcgtcc ttgcccggct tgggcgcgaa gcgcaggcgg acatgaggcg
     1921 cgacgtcggt gacggcggcc acgaacgccg cggcaaacac ctccaggaac ccttcgctcg
     1981 cacggatggt gaaggtccgc tcaagcatcg cgacgtccaa atgactgacg ttcggcgtca
     2041 agacggcgcg cacgtcccgg gtcagctcat gaacccgatc ccgcagttcc gaggcccggg
     2101 gagtcggggc caagccgcgc cccgcccgca caagcagcgg gtcacccgtc gccgaccgga
     2161 gccgcgcgag agtccggctc atcgccgaag gactcaagcc gagacgccgc gccgcgccgg
     2221 tcacgctgcc ctcagcgagg agggcatcca acgctgcaag caggttcatg tctaaggtgt
     2281 ccataaccca gcctacaaga cctgaccaat gcgacctagc gtttgacgca actatagtat
     2341 gcatctgatg cgtctggcgc ttgtcaatgg agaggcgcac atcgctgtcg actgccgaag
     2401 tgaaagacgt tttcatggct ccagcccctt cacctgaacc ggttcgcacg gtgcttctcg
     2461 ttggagcgtc ccgcggtctt gg
//
LOCUS       DATAJL010000554         2257 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59525,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000554 DATAJL010000000
VERSION     DATAJL010000554.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59525"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..273
                     /locus_tag="VHN39_10570"
     CDS             <1..273
                     /locus_tag="VHN39_10570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX2816832.1"
                     /translation="RVACTLETGRTHQIRVHLASVGAPCLGDPAYGSGPPAEKVRAAM
                     AEAGLKRQALHAAVLGFRHPITGEVQRFESPLPPDMATLQGLLADL"
     gene            427..>2257
                     /locus_tag="VHN39_10575"
     CDS             427..>2257
                     /locus_tag="VHN39_10575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816833.1"
                     /translation="MTFTRLKPQLHAGVCAAALLVASSAMAVDAKKPAPAPAPRTVSE
                     VVVTAEQKVEPGAAVGDIKPDLQLQPQDVAAYGVSTITDLLDELAPEIGSNSGRGGEG
                     PAILVNGRRISGFNEIRNLPTESILRVDILPEEAALKYGFSANQRVVNIVLKPSYGSE
                     LVELAGGAATAGGAASGQAEVGATRIAGERRFNVDLKYNPQASLTEADRDVIPLTTGP
                     TLDLAGNPVDARRFRTLVADTQKVSLNAVLTKPIFADISATLNGTFEATKSDALRGLP
                     GVTLFAPSAAGPIEIDRLATGFGALNQDAQSWTGHLGVSFNRDISQWRLALTGNYDHA
                     DNTNSNDVGVDASALQAALASGLITLTPAGPIPANLLTLRAQDTGHSKSDTGNVQFIA
                     SGPIYTIPAGQIRTSFRVGGTGSAFTSESERFGASQSASFSRTTANAQASLDVPLTSV
                     KQKILPMLGDINVNAHVAVDQLSDFGTLTTFGYGVHWTPITGLSILASRLHDQAAPSQ
                     QQLGGALLLTPGARIFDFATGQTVDVTQVSGGNPALTGDDRYRTSLRVTYQPWADKQL
                     TFRADYNKIHYKNPIAAFPTAATAQIEAAFPDRFVRDASGELTE"
BASE COUNT          368 a          883 c          699 g          307 t
ORIGIN      
        1 cgcgtggcct gcacgctgga gaccggccgc acccaccaga tccgcgtgca cctggcctcg
       61 gtcggcgcgc cctgcctcgg cgacccggcc tatggctccg gcccgcccgc ggaaaaggtc
      121 cgcgcggcga tggctgaggc cggcctgaag cgccaggcgc tgcacgccgc ggtgctgggc
      181 ttccgccacc ccatcaccgg cgaagtccag cgcttcgaga gccccctgcc gcccgacatg
      241 gcaaccctgc aggggctgct cgccgatctc tgacatttca ccgccgcagg acgggtcgac
      301 cggggggtaa tcgctacgaa acaatggcgc cctcatttga acgagctgaa cggcgacagc
      361 agaacgctgc agcttttggg ggagatcggc aggcccgcgc ggccacgccc acggatgaca
      421 cgccgcgtga ccttcacccg cctcaagccg caattgcatg cgggcgtctg cgccgcagcg
      481 ctgctcgtcg cctcaagcgc gatggcggtc gacgccaaga agcccgcgcc cgccccggcg
      541 cccaggaccg tctccgaggt cgtggtcacc gccgagcaga aggtcgagcc cggcgcggcg
      601 gtcggcgaca tcaagcccga cctgcagctg cagccgcagg acgtggcggc ctacggcgtc
      661 tccaccatca ccgacctgct ggacgagctg gcgccggaga tcggctccaa ctccggtcgc
      721 ggcggcgagg gcccggcgat cctggtcaat ggccggcgca tttccggctt caacgagatc
      781 cgcaacctgc ccaccgaatc gatcctgcgc gtcgacatcc tgccggagga ggccgcgctg
      841 aagtacggct tctcggccaa ccagcgcgtc gtcaacatcg tgctcaagcc cagctacggc
      901 tccgagctcg tcgagctggc gggcggggct gccaccgcgg gcggcgcggc cagcggccag
      961 gcggaggtcg gcgccacccg catcgccggc gagcggcgct tcaacgtcga cctgaagtac
     1021 aatccccagg cctcgctcac cgaggccgac cgcgatgtga tcccgctcac caccggcccc
     1081 accctggacc tcgccggaaa ccccgtcgac gcgcgccgct tccgcacgct ggtggccgac
     1141 acccagaagg tctcgctgaa cgcggtcctc accaagccga tcttcgccga catctcggcc
     1201 actctgaatg ggacctttga ggccaccaag tccgacgccc tgcgcggcct gccgggcgtg
     1261 accttgttcg cgccgtccgc cgccggtccc atcgagatcg accggctggc gacgggcttc
     1321 ggcgccctga accaggacgc ccagtcgtgg acgggccacc tgggcgtcag cttcaatcgc
     1381 gacatctccc agtggcgcct ggcgctcacc ggcaactacg accacgccga caacaccaat
     1441 tccaacgacg ttggcgtcga cgcctcggcc ctgcaggccg ccctggcgtc aggcctgatc
     1501 accctcacgc cggccgggcc gatccccgcc aacctgctga cgctccgcgc ccaggacacc
     1561 ggccattcga agtccgacac cggcaacgtc cagttcatcg cgtctgggcc gatctacacg
     1621 atccccgccg gccagatccg caccagcttc cgcgtcggcg gcacaggcag cgcattcaca
     1681 tcggagtcgg aacggtttgg cgcgagccag tcggccagct tctcgcgcac gacggccaac
     1741 gcccaggcca gcctcgacgt gccgctcacc agcgtgaagc agaagatcct gccgatgctg
     1801 ggcgatatca acgtcaacgc ccatgtggcc gtcgaccagc tctccgactt cgggacgctg
     1861 accaccttcg gttacggcgt ccactggacc ccgatcaccg gcctcagcat cctggcctcg
     1921 cgcctgcacg accaggccgc gccgtcgcag cagcaactgg gcggcgcctt gctgctgacc
     1981 cctggcgccc ggattttcga cttcgccacc ggccagacgg tggacgtgac ccaggtctcc
     2041 ggcggcaacc cggcgctgac cggcgacgac cgctaccgca cctcgctgcg ggtgacctat
     2101 cagccctggg ccgacaagca gctgaccttc cgggccgact acaacaagat ccactacaag
     2161 aacccgatcg cggccttccc caccgcggcg accgcgcaga tagaggcggc cttccccgac
     2221 cgcttcgtcc gagacgcctc gggcgagctt accgagg
//
LOCUS       DATAJL010000555         5322 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35559,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000555 DATAJL010000000
VERSION     DATAJL010000555.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5322
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35559"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /locus_tag="VHN39_10580"
     CDS             <1..978
                     /locus_tag="VHN39_10580"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel family protein"
                     /protein_id="HEX2816834.1"
                     /translation="VLTNLFDFRQTISAAYVTYERPVGDLTVLAGLRVEDVQMHVDQV
                     TLGQQDENDYLRAYPSLHLGWKLSDSQSLSASYSHRVQRPDPSDFNAFRFLLDPLNFR
                     AGNPHLKPQQTQSFEVGYAYRGTPTTLQATLYYRESRDGVDNVLRDLGGGVTLSERAN
                     LAQSRSAGLETNASGKLTKTLSYNVSGTLSWTQLDSLGPTFAPTRSLTAFGGHGGLTW
                     QPTADDLFQLNAFMNPKRLTAQGHFDALVGMDLGYRRKLSDQLSLVMTLQDLLRSFRA
                     RGGNDTPVLIERFGSNFDTRSIRLGLTWTFGGGKLRDPGFEFTGGGGAP"
     gene            complement(981..2387)
                     /locus_tag="VHN39_10585"
     CDS             complement(981..2387)
                     /locus_tag="VHN39_10585"
                     /inference="COORDINATES: protein motif:HMM:NF012772.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX2816835.1"
                     /translation="MPDRVKLLNDLTARIAQLESERALTMRLAQTDSLTGLVNRGAFT
                     SELCERLEAARASGEQVALFVVDLDRFKLLNDTLGHHAGDLFLAEVGERLRASAGPGE
                     LVARLGGDEFALISTCAEPGRRAQQLLELLTRPHAIYGRQVSPGASVGVAVFPDDAAE
                     AGDLQRFADMALYRVKTQGGRRWSAFDADLRDENQRRRTLEADLRRGIPAGEIEPWFQ
                     PVVDAKDGRIVGVEVLARWRHPDHGLLLPAAFVPMAEELGLIGRIDEAVFEAGCARAA
                     PWVEAGLIEQIAFNVSPRDLLDPSFSRKLIGRLAKTALPATNLTVEITETFLLQDLAL
                     SRRHIERLNAKGIRIALDDFGTGYSNLRALMHLPIQTVKLDRSLICDIAKDSRVAKLV
                     ASMLHAARALGVRIVAEGVEEEAQAIILRAAGCDRMQGYWFARPMPADQMDDALRESR
                     AATPRELVAEPGRIRVHG"
     gene            complement(2482..3744)
                     /locus_tag="VHN39_10590"
     CDS             complement(2482..3744)
                     /locus_tag="VHN39_10590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HEX2816836.1"
                     /translation="MNRLFTILIIAAMVLGVAVGWGVHQYATPADAKLVATNLSIITD
                     VFLRLIKMIIAPLVFSTLVAGIAHMEDASTIGRVGAKTLGWFISASLVSLTIGLIMVH
                     LIQPGVGMHLIADPVAPGAAVDMTKFNLKDFVSHIFPKSIVEAMANNEILQIVIFSVF
                     FGTAVAAIEDRAPVVVVAVEQVSAIMLKVTSYVMKTAPLAIFAALAATVSTQGIGVLA
                     TYAKFVGGFYLSLGILWALLVAVLVLIVGPRALKLIAAIRSPALLAFSTASSEAAYPG
                     TLEALQEWGVSRRVASFVLPLGYSFNLDGTMMYCTFATLFVAQAYGIHLSIGQQITML
                     LLLMITSKGVAGVPRASLVVISATLTYFHLPEAGLLLILAVDNLLDMGRSATNVVGNS
                     VAAAVVAKWENQIELPRTEDEVIAAAAT"
     gene            3849..5300
                     /locus_tag="VHN39_10595"
     CDS             3849..5300
                     /locus_tag="VHN39_10595"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008714 - AMP nucleosidase activity
                     [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA];
                     GO_process: GO:0044209 - AMP salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HEX2816837.1"
                     /translation="MTSKTDAAGIVDRLEDEYRKTVEALRGALKDFLAGGPPPDPAVR
                     AAGAFVYPELRLHWPAGEPFPRIGRAYARIGAPGHYAVTVTKPRLFRAYLIEQLSLLM
                     QDFKVEIEVGRSKQEMPFPYVLDGQADAALADIGSAEIARHFPTTELAFIGDEIVDGS
                     WTQHADDPRPMALFDGLRTDFSLARLTHYTGAPAEHVQQYILFTNYIRYVDEFVRWGC
                     EQIKAGGPYTALSAAGNVMITADTPDPEATVNAAAWRKHQMPAYHLMAEGGAGITLVN
                     IGVGPSNAKTICDHLAVLRPQAWLMIGHCGGLRGSQTIGDYVLAHAYLRDDHVLDEAL
                     PTEIPIPPIAEVQVALNRAAEIVTGETGEVLKRRLRTGTVVTTDDRNWELRYSSSALR
                     FNQSRAVAIDMESATIATQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANAFYDRAIGQ
                     HLQIGIATMDLLRQEGPRLHSRKLRSFDEPPFR"
BASE COUNT          916 a         1779 c         1847 g          780 t
ORIGIN      
        1 gtgctgacca acctcttcga tttccgccag acgatcagcg cggcctacgt gacctacgag
       61 cggcctgtcg gcgacctgac ggtgctggcg ggcttaaggg tcgaggacgt gcagatgcat
      121 gtggaccagg tgaccttggg ccagcaggac gagaacgact atctgcgcgc ctatcccagc
      181 ctgcacctgg gctggaagct gtcggacagc cagtcgctca gcgccagcta cagccatcgg
      241 gtgcagcggc ccgatcccag cgacttcaac gccttccgct tcctgctcga cccgttgaac
      301 ttccgcgcgg gcaatccgca cctgaagccc cagcagaccc agtcgttcga ggtgggctac
      361 gcctatcgcg ggacgccgac gacgctgcag gcgacgctct actatcggga gagccgcgac
      421 ggcgtggaca atgtgctgcg cgacctgggc ggcggcgtga ccctgagcga gcgggccaac
      481 ctggcgcaga gccgcagcgc cggactggag accaacgcca gcggcaagct gaccaagacg
      541 ttgagctata acgtcagtgg gaccctgagc tggacgcagt tggattccct ggggccgacc
      601 tttgcgccga cccgctcgct gacggcgttc ggcgggcacg ggggcttgac ctggcagccg
      661 accgccgacg acctcttcca gctcaacgcc ttcatgaatc cgaagcggct gacggcgcag
      721 ggccatttcg acgccctggt cgggatggat ctgggctatc ggcgcaagct cagcgaccag
      781 ctctcactgg tgatgaccct gcaggacctg ctgaggagct tccgggcccg cgggggcaat
      841 gacaccccag tcctcatcga acggttcggg agcaacttcg acacccgatc gatccggctc
      901 ggcctcacct ggaccttcgg cggcggcaag ctgcgcgacc cgggcttcga gttcaccggc
      961 ggcggcgggg cgccctagcg ctacccgtgg acgcggatgc ggcccggctc ggcgacaagt
     1021 tcgcggggcg tagcggcgcg ggattcgcgg agcgcgtcgt ccatctggtc ggcgggcatg
     1081 gggcgggcga accagtaacc ctgcatgcgg tcgcagccgg cggcgcgcag gatgatcgcc
     1141 tgggcctctt cctcgacgcc ctcggcgacg atgcgcacgc ccagcgcgcg ggccgcgtgc
     1201 agcatggagg cgacgagctt cgcaacccgt gagtccttgg cgatgtcgca gatcagcgag
     1261 cggtcgagct tcaccgtctg gattggcagg tgcatcagcg cgcgcaggtt ggaatagccg
     1321 gtgccgaagt cgtcgagcgc gatgcggatg cccttggcgt tcaaccgctc gatgtggcgg
     1381 cgcgagagcg ccagatcctg cagcaggaag gtctcggtga tctcgacggt gaggttggtg
     1441 gcgggcaacg cggtcttggc gaggcggccg atcagcttgc gcgaaaagct cgggtccagc
     1501 aggtcgcgtg gcgagacgtt gaaggcgatc tgctcgatca gcccggcctc gacccagggg
     1561 gccgcgcgcg cgcagccggc ctcgaacacc gcctcgtcga tgcggccgat caggcccagc
     1621 tcctcggcca tgggcacgaa ggcggcgggc agcagcaggc cgtggtcggg atggcgccag
     1681 cgggccagga cctcgacgcc gacgatgcgg ccgtccttgg cgtcgaccac cggctggaac
     1741 cagggctcga tctccccggc cgggataccg cggcgcaggt ccgcctcaag cgttcggcgg
     1801 cgctggtttt catcgcgcag gtcggcgtcg aaggccgacc agcggcgtcc gccctgggtc
     1861 ttgacccgat agagcgccat gtcggcgaag cgctgcaggt cgccggcctc ggcggcgtca
     1921 tccgggaaca ccgcgacacc gaccgaggcg ccgggggaga cctggcggcc atagatcgca
     1981 tgcggccggg tgagcagctc caggagctgc tgggcgcggc ggccgggctc ggcgcaggtg
     2041 gagatcaggg cgaattcgtc gccgcccagc cgggccacca gttcgccggg gccggcgctg
     2101 gcgcgcaggc gctcgcccac ctcggccagg aagaggtcgc cggcgtggtg accgagcgtg
     2161 tcgttgagca gcttgaagcg gtcgaggtcg acgacgaaca gcgccacctg ctcgcccgat
     2221 gcccgggcgg cctccagacg ctcgcagagc tcggaggtga aggccccgcg gttgaccaga
     2281 ccggtgagcg agtcggtctg ggcgagccgc atggtgagcg cgcgctcgga ttccagctgt
     2341 gcgatgcgcg ccgtcaggtc gttcaggagt ttgacgcgat cgggcacggt ggagagcagc
     2401 cttgggccaa cagatgacac tcaggtccca gttagccccc cacgaggcga acgccccgtt
     2461 aagcgacatg cctaacggcg ctcatgtcgc tgcggcggcg atgacctcgt cctcggtcct
     2521 cggcagctct atctggtttt cccacttggc gaccacggcg gcggccacgg agttgccgac
     2581 cacgttggtg gccgagcggc ccatgtcgag caggttgtcg acggccagga tcagcagaag
     2641 gcccgcctct ggcaggtgga agtaggtgag ggtggcggag atcaccacca gcgaggcgcg
     2701 cggcacgccg gcgacgccct tcgacgtgat catcagcagc agcagcatgg tgatctgctg
     2761 accgatgctg aggtggatgc cataggcctg ggcgacgaaa agggtcgcga aggtgcagta
     2821 catcatcgtg ccgtcgaggt tgaacgagta gcccagcggc aggacgaagc tcgcgacgcg
     2881 ccgcgagacg ccccactcct gcagcgcctc cagcgtgccg ggataggcag cttcggagga
     2941 ggcggtggag aaggcgagca gggccgggct gcggatcgcc gcgatcagct tcagcgcgcg
     3001 cggcccgacg atgagcacca ggacggcgac cagcagcgcc cagaggatcc ccagcgacag
     3061 gtagaagccg cccacgaact tggcgtaggt ggcgagcacg ccgatgccct gggtggagac
     3121 cgtcgccgcc agcgccgcga agatagcgag cggcgcggtc ttcatcacat agctggtgac
     3181 cttcagcatg atcgccgaga cctgctcgac ggccacgacc acgacaggcg cgcggtcctc
     3241 gatggccgcc acggcggtcc cgaagaacac cgagaagatg acgatctgca ggatctcgtt
     3301 gttggccatc gcctcgacga tggacttggg gaagatgtgg ctgacgaagt ccttcaggtt
     3361 gaacttggtc atgtcgacgg cagccccggg cgccacgggg tcggcgatca agtgcatccc
     3421 cacgccgggc tggataaggt ggaccatgat caggccgatg gtcagcgaga ccagcgaggc
     3481 cgagatgaac cagccgagcg tcttggcgcc gacccggccg atcgtcgagg cgtcctccat
     3541 gtgggcgatg ccggccacca gggtcgagaa caccaggggc gcgatgatca tcttgatcag
     3601 gcgcaggaag acgtcggtga tgatcgacag gttggtggcg acgagcttcg cgtcggccgg
     3661 cgtcgcatac tggtgaaccc cccagccgac agcgacgccc agcaccatgg ccgcgatgat
     3721 gaggatcgtg aaaaggcgat tcatgaaggt cccgatggtc cggtttgacg gcctttgtcg
     3781 ctgggaagcg cggcttcgtc catcccgccc gctcgccaag ctccgccagg ggcgtctata
     3841 aggacgcgat gacatcaaag acagacgcag ccggcatcgt ggaccggcta gaagacgaat
     3901 accgcaagac ggtcgaggcc ctgaggggcg cgctgaagga cttcctggcc ggaggaccgc
     3961 cgccggatcc ggccgtccgc gccgctgggg ccttcgtcta tcccgagctt cggctgcact
     4021 ggccggccgg cgaacccttc ccgcgcatcg gccgcgccta cgcccgcatc ggcgcgccgg
     4081 gccactatgc ggtcacggtg accaagccca ggctgttccg cgcctacctg atcgagcaac
     4141 tcagcctcct gatgcaggac ttcaaggtcg agatcgaggt gggccgctcc aagcaggaga
     4201 tgccgttccc ctatgtgctc gacggccagg ccgacgcggc gctggccgac atcggctcgg
     4261 cggaaatcgc gcggcatttc ccgaccacgg agttggcctt catcggcgac gagatcgtcg
     4321 acgggtcctg gacccagcac gccgacgatc ccaggcccat ggccctcttc gacgggctgc
     4381 ggaccgactt ctcgctggcg cggctgaccc actacaccgg cgcgccagcc gagcacgtgc
     4441 agcagtacat cctgttcacc aactacatcc gctacgtcga cgagttcgtc cgctggggct
     4501 gcgagcagat caaggcgggc gggccctaca cggcgctttc ggcggccggc aatgtgatga
     4561 tcaccgccga cacgccagac ccggaggcga cggtgaacgc ggcggcctgg cgcaagcatc
     4621 agatgccggc ctaccacctg atggccgagg gcggcgccgg catcaccctc gtcaacatcg
     4681 gggtcggtcc ctccaacgcc aagaccatct gcgaccacct ggcggtgctt cgtccgcaag
     4741 cctggctgat gatcggccac tgcggcggtt tgcgcggctc gcaaaccatc ggcgactacg
     4801 tgctggcgca cgcctatctg cgcgacgacc atgtgctgga cgaggccctg ccgaccgaga
     4861 tcccgatccc gccgatcgcc gaggtgcagg tggcgctgaa ccgcgccgcc gagatcgtca
     4921 ccggcgagac cggagaggtc ctgaagcggc gcctgcgcac tggcaccgtg gtcacaaccg
     4981 acgaccgcaa ctgggagctc cgctattcct cgagcgcgct gcggttcaac cagagccggg
     5041 ccgtggccat cgacatggaa agcgccacca tcgccaccca gggttaccgg ttccgggtgc
     5101 cctacgggac gctgctatgc gtctccgaca agccgctgca cggggagatc aagctgcccg
     5161 gccaggccaa cgccttctac gaccgcgcca tcggccagca cctgcagatc ggcatcgcca
     5221 ccatggacct cctgcgccag gaaggtccgc gcctgcactc gcgcaagctg cgcagcttcg
     5281 acgaaccgcc attccgatag ggatcgagac catgttcaag cg
//
LOCUS       DATAJL010000556         3734 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9622,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000556 DATAJL010000000
VERSION     DATAJL010000556.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3734
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9622"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VHN39_10600"
     CDS             complement(<1..514)
                     /locus_tag="VHN39_10600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase subunit A"
                     /protein_id="HEX2816838.1"
                     /translation="MASKTVDGAREALAGVLFDGMTIMAGGFGLCGIPENLIAAIRDA
                     GVKDLTVVSNNCGVDDFGLGILLAGGQIRKMISSYVGENKLFAELYLSGKLELEFNPQ
                     GTLAERIRAGGAGIPAFFTKTGVGTLVAEGKEVREFDGEAYVMERGLTADLSIIKAWK
                     GDAEGNLIYRK"
     gene            614..1585
                     /locus_tag="VHN39_10605"
     CDS             614..1585
                     /locus_tag="VHN39_10605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein"
                     /protein_id="HEX2816839.1"
                     /translation="MSQAHTLPPRIAPVSFEGFGRDFAHFSDTLGASFARFGFAVICD
                     HGIPEARIEAALAAAKRFFALSDAEKLKYKLPVGGKRGFTPFGVETAKGETRYDLKEF
                     WHVGRDLPPGHKYRNHMADNVWPDAEVAEFHETVGWLYGALDQMGLKVLEAIAVYLGL
                     ERHFFDDTVDFGNSILRLLHYPPILAQEGGPVDGPHIRAAAHEDINVITLLLGAEEAG
                     LEVLDRDGQWLAVNPPPGSLVCNIGDMLQRLTNNKLPSTTHRVVNPAPERRGVPRYST
                     PFFLHFNSDYEIKTLPSCVDATHPDRYPTSITADEFLQERLREIKLA"
     gene            complement(1632..3242)
                     /locus_tag="VHN39_10610"
     CDS             complement(1632..3242)
                     /locus_tag="VHN39_10610"
                     /inference="COORDINATES: protein motif:HMM:NF024792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein TadG-related protein"
                     /protein_id="HEX2816840.1"
                     /translation="MRNLSSKSRLFNFLSRTGRDERGVSAVAFAISFAVLTPMALGIF
                     DVYQSTEQRGKLQDALDAAALYAARSSAFTTPAINTIGNKALTANLQLIHGATLSNSS
                     FTLNGTEVDATAQVTLPAYAPMEYTHLPVTVNSTVQRAMDRLEVALVLDNTGSMAANN
                     KLTTLQTDAKQLIDKLVTASLQSTDPNPLKIALIPFSQTVRVQGNTVVTGGNYVPASH
                     TGANIPTWIDPQGKAHSALGVNFDIFSVAQTDRLTLLRQMSQPWAGCVESRMAPYDIQ
                     ETAPDSNTPASMFVPYFWTDELGNKNSGVNSSLNDYLNDGPGANTRAKQQEITRYNTS
                     QLRVGSMGSGYNYGPNAGCGLQQAIRLTANSASIKTAIDGMTAVGDTNIPMGLMWGWH
                     ALSPNAPWADGSAYNTAHLKKVIILMTDGANTFTTRNDNNGSFYSGAGYIWQQLVSAI
                     PGLTSASSDATRTAAMDARMAQLCTNIKNKNIYVYTIRIEFTQGSPTLLQNCATTADD
                     FYDVANVANLGAAFDAIAGSINNLRLSH"
     gene            complement(3368..>3734)
                     /locus_tag="VHN39_10615"
     CDS             complement(3368..>3734)
                     /locus_tag="VHN39_10615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEX2816841.1"
                     /translation="IKVKHVMVVGHYGCGGIAAAVDGQRRGLVDHWLHPIREVSHDHR
                     HELAAIPEERARLDRLCELNVIRQVKNVASDVFVQDAWARGQQVCVHGWVYSLSTGLV
                     NDLAVTVGGLDDLAALDGC"
BASE COUNT          600 a         1199 c         1232 g          703 t
ORIGIN      
        1 tctttcgata gatgaggttg ccctcggcgt cgcccttcca ggccttgatg atggaaagat
       61 cggcggtcag gccgcgctcc atcacatagg cctcgccgtc gaactcccgt acctccttgc
      121 cctcggccac cagggtgccg accccggtct tggtgaagaa cgccgggatg ccagccccgc
      181 cggcccggat gcgctcggcc agcgtgccct gcggattgaa ctccagctcc agctttccgg
      241 agaggtagag ctcggcgaac agcttgttct cgccgacata gctggagatc attttcctga
      301 tctgaccgcc ggccagcagg atccccagcc cgaagtcgtc gaccccgcag ttgttggaga
      361 ccaccgtcag gtccttgacg ccggcgtcgc ggatcgcggc gatcaggttc tcggggatgc
      421 cgcagaggcc gaagccgccc gccatgatgg tcatgccgtc gaagagcacg cccgctagcg
      481 cctcgcgggc gccgtccact gtcttgctgg ccatcccacc ctgttacgcc gcaatgcagc
      541 atttgagaac ggcccgtttg gaaaaaacgc gcgcggttgg aagcaggcct tgggcgggtg
      601 tagaaccgcg gaaatgagcc aagcccacac tcttcccccc cgcatcgcgc ccgtgtcctt
      661 cgaaggtttc ggccgcgact tcgcccattt ctccgacacc ctgggcgcct ccttcgcccg
      721 tttcggcttc gcggtgatct gtgaccacgg catccccgag gcgcgcatcg aggccgccct
      781 ggcggcggcc aagcggttct tcgcgctcag cgacgccgag aagctgaagt acaagctgcc
      841 ggtcggcggc aagcgcggct tcaccccgtt cggcgtcgag accgccaagg gcgagacccg
      901 ctacgacctg aaggagttct ggcacgtggg gcgggacctg ccgccgggcc acaaataccg
      961 caaccacatg gccgacaacg tctggccgga cgccgaggtg gccgagttcc acgagacggt
     1021 cggttggctc tatggcgcgc tggaccaaat gggcctgaag gtgctggagg cgatcgccgt
     1081 ctacctgggc ctggagcgcc acttcttcga cgacacggtc gatttcggca attcgatcct
     1141 gcgcctgctg cactatccgc caattcttgc tcaagagggt gggccggtgg acggcccgca
     1201 tatccgcgcg gcggcgcacg aggacatcaa cgtcatcacc ctgctgcttg gcgcggagga
     1261 agcagggctg gaggtcctgg accgcgacgg ccagtggctg gcggtcaacc cgccgccggg
     1321 ctcgctggtc tgcaatatcg gcgacatgct gcagcggctg accaacaaca agctgccgtc
     1381 cacgacccac cgggtggtca atcccgcgcc ggagcgccgc ggcgtgccgc gctactcgac
     1441 cccgttcttc ctgcacttca actcggacta cgagatcaag accctgccga gttgcgtcga
     1501 cgcgacccat cccgaccgct acccgacctc gatcaccgcc gatgagttcc ttcaggaacg
     1561 cctgcgcgag atcaagctgg cctaggcgcg tccgctcccc acgcttgtgc gcggggagcc
     1621 aaggggccgc tttagtgcga gagccgcagg ttgttgatcg agccggcgat ggcgtcgaac
     1681 gccgcgccga ggttggcgac gttggccaca tcgtagaagt cgtcggcggt cgtggcgcag
     1741 ttctgcaaga gcgtcggtga gccctgcgtg aactcgatgc ggatcgtgta gacgtagatg
     1801 ttcttgttct tgatgttggt gcagagctga gccatccgcg catccatggc cgcggtccgc
     1861 gtggcgtcgg atgaggcgct ggtcagcccg gggatggcgc ttaccagctg ctgccagatg
     1921 tagcccgcgc cgctgtagaa cgagccgttg ttgtcgtttc gggtggtgaa ggtgttggcg
     1981 ccgtcggtca tcaggatgat gaccttcttc aggtgggctg tgttgtaggc cgatccgtcc
     2041 gcccacgggg cgttgggcga cagcgcgtgc cagccccaca tgaggcccat gggaatgttg
     2101 gtgtcgccca ccgcggtcat gccgtcgatc gcggtcttga tcgacgcgga attcgcggtc
     2161 agccggatcg cctgctgcag gccgcagccg gcgttcggtc cgtagttgta gcccgacccc
     2221 atcgaaccga cgcgcagctg gctggtgttg taccttgtga tttcctgctg ctttgcccgg
     2281 gtgttcgcgc caggcccgtc gttgaggtag tcgttgagcg agctgttgac gcccgagttc
     2341 ttgttgccca gttcgtcggt ccagaaatag gggacgaaca tgctggccgg cgtgttggaa
     2401 tccggggccg tctcctggat gtcataaggc gccatgcgcg actccacgca tccggcccag
     2461 ggctggctca tctggcgcag cagggtcagg cgatcggtct gggcgacgct gaagatgtcg
     2521 aagttcacgc ccaacgccga gtgggccttg ccctgcggat cgatccacgt cgggatgttc
     2581 gcgcccgtgt ggctcgcggg gacgtagttg ccgccggtga cgaccgtgtt cccctgcacg
     2641 cgcactgtct gagagaacgg gatcagggcg atcttcagcg ggttcgggtc tgtcgactgc
     2701 agggacgccg tcaccagctt gtcgatcagc tgcttggcgt cggtctgcag ggtggtgagc
     2761 ttgttgttgg ccgccatgga gccagtgtta tcgagcacca gggctacttc cagccggtcc
     2821 atcgcccgct gcaccgtgga gttcaccgtc accggcaggt gagtgtattc catgggcgca
     2881 taggccggga gcgtcacctg ggcggtggcg tccacctcgg tgccgttcag cgtgaagctg
     2941 gagttgctga gcgtcgcgcc gtggatcagc tgcaggttgg cggtcagcgc cttgttgccg
     3001 atcgtgttga tggccggcgt cgtaaaggcg cttgagcggg cggcgtagag cgccgcggcg
     3061 tcgagcgcat cctgcagttt cccccgctgt tcggtggact ggtagacgtc gaatatgccc
     3121 agcgccatcg gcgtgagcac cgcgaacgag atcgcgaagg cgacggcgct gacgccgcgc
     3181 tcgtcccggc ccgtgcggga cagaaaattg aacaggcgag atttgctgct gaggtttcgc
     3241 atctagacac ccgagtcctg cttcttcggg tgcaaattgg tccatcagcg taaaggaatc
     3301 agttacgaag cacagtaaat ctttgattca tcacgcttat agttaagtcc gccagataga
     3361 cctgaggcta gcagccgtcc agcgccgcca ggtcatccag cccgcccacc gtcaccgcca
     3421 ggtcattgac caggccggtg gacagcgaat agacccagcc atggacgcag acctgctggc
     3481 cgcgcgccca ggcgtcctga acgaagacat ctgaggcgac gttcttcacc tgacggatga
     3541 cattgagttc gcatagccgg tccagccgcg cgcgctcctc ggggatggcg gcgagttcgt
     3601 ggcggtggtc gtggctgacc tcgcggatcg ggtgcagcca gtggtccacc aggccgcgcc
     3661 gctggccatc gaccgccgcg gcgatccccc cgcagccgta gtggccgacc accatcacgt
     3721 gcttgacctt gatc
//
LOCUS       DATAJL010000557         1582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_48301,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000557 DATAJL010000000
VERSION     DATAJL010000557.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48301"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..766
                     /locus_tag="VHN39_10620"
     CDS             <1..766
                     /locus_tag="VHN39_10620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816842.1"
                     /translation="TETGEVAVSVTAHAAGVRLSVRDTGPGVPDGLADRLFEKFTQAD
                     SSTTRRFGGTGLGLAICRELCEAMGGTIAVSSGPQGGSIFTVDLPLARSVAEATAEPA
                     ATAAAPQAPGSCDRPLRVLAAEDNAVNQLVLRTLLEQIGVEATIVDDGAEAIRAWEDA
                     DFDLILMDVQMPRMDGPTAARAIRAREVVSGRARSPIIALTANVMSHQLAAYTAAGMD
                     AFVAKPISIVDLYAAIARCTAEAVEAPPARPYTASR"
     gene            complement(748..>1582)
                     /locus_tag="VHN39_10625"
     CDS             complement(748..>1582)
                     /locus_tag="VHN39_10625"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2816843.1"
                     /translation="VRITRILELEATGGTRFILPQATREVVQEIGWLAPHFADEDGRL
                     RMSIHALVVETPTKRIIVDTCIGNDKERDIPTWSGLQTNFLADLEAAGFARESIDTVL
                     CTHLHVDHVGWNTMLVDGAWVPTFPKARYLLGRAEFEYWRAEDAGNEAPERSPFHDSV
                     KPVWEAGLVDLVETDHQICPEVSFEPTLGHTPGHVSVRIRSQGEDALITGDFIHHPCQ
                     FSHPEWASLADFDEAASTATRQRMFGALAGSKTLVIGTHFSAPTAGHVVRDGEVYRLA
                     V"
BASE COUNT          235 a          572 c          532 g          243 t
ORIGIN      
        1 cacagaaacc ggtgaggtgg cggtctcggt caccgctcat gccgcagggg tgcggctcag
       61 cgtgcgggat acgggccccg gcgtgccgga cggcttggcc gaccgcctgt tcgagaagtt
      121 cacccaggcc gattcctcca ccacccggcg tttcggcggc acgggccttg gtctggcgat
      181 ctgccgcgaa ctctgtgagg cgatgggggg aacaatcgcg gtctccagcg gtccgcaggg
      241 cggcagcatc ttcaccgtcg acctgccgct ggcgcgcagc gtcgccgaag cgacagccga
      301 gccggcggcc accgcggcgg cgccccaggc gccaggatct tgcgacaggc cgctgcgcgt
      361 gctggcggcc gaggacaatg ccgtcaacca gctggtgctt cgcaccctgc ttgagcagat
      421 cggcgtcgag gccacgatcg tcgacgacgg ggccgaggcg atccgcgcct gggaggacgc
      481 cgacttcgac ctgatcctga tggacgtcca gatgccccgg atggacggcc ctaccgccgc
      541 ccgggccatc cgcgcccgtg aagtggtgag cggccgcgcg cgcagcccca tcatcgccct
      601 gacggccaat gtcatgagcc atcaactggc ggcctatacg gcggccggca tggacgcctt
      661 cgtcgccaag cccatctcga tcgtcgacct ctacgccgcg atcgcgcgct gcaccgctga
      721 ggcggtggag gctcctcccg cgcggcccta caccgccagc cgatagacct cgccgtcgcg
      781 caccacatgc cccgccgtgg gggctgaaaa gtgcgtcccg atgaccaggg tcttcgagcc
      841 ggccagcgcc ccgaacatcc gttgccgcgt ggcggtggag gcggcttcgt caaagtccgc
      901 caggctcgcc cattccgggt ggctgaactg gcaggggtgg tggatgaagt cgccggtgat
      961 cagggcgtcc tcgccctgcg accggatgcg cacgctgaca tggcccggcg tatgccccag
     1021 cgtcggctcg aacgacacct ccggacagat ctggtggtcg gtctccacca ggtccacgag
     1081 ccccgcctcc cagaccggct tgacactgtc gtggaacggc gagcgctccg gcgcctcgtt
     1141 ccccgcgtcc tcggcgcgcc agtactcgaa ctccgcccgg cccagcagat agcgggcctt
     1201 ggggaaggtc gggacccagg cgccgtcaac cagcatggtg ttccagccca catggtccac
     1261 gtgcaggtgg gtgcagagca cggtgtcgat gctctcccgc gcgaagcccg cggcctccag
     1321 gtcggccagg aaattcgtct gcaggccgct ccaggtgggg atgtcgcgtt ccttgtcgtt
     1381 gccgatgcag gtgtcgacga tgatccgctt ggtcggcgtc tccaccacca gggcgtggat
     1441 gctcatccgc aaacgcccgt cctcgtcggc gaaatggggc gcgagccagc cgatctcctg
     1501 caccacctcc cgcgtcgcct gcggcaggat gaaccgcgtc ccgccggtcg cctcaagctc
     1561 caggatccgc gtgatcctga cc
//
LOCUS       DATAJL010000558         5041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9627,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000558 DATAJL010000000
VERSION     DATAJL010000558.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5041
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9627"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..737
                     /locus_tag="VHN39_10630"
     CDS             183..737
                     /locus_tag="VHN39_10630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2816844.1"
                     /translation="MAAATTPEDLAHLMTRVATGERAALRQLYDATSAKLFAVCLRIL
                     SDREEAEDVLQEVYVTVWRRADRFDGSRASVMTWVSTIARNRSIDRLRARGPLAYADQ
                     VEDLDIADGGVSAEALLVTAGEEGRLHHCLSELDDRTEKVIRTAFFEGVTYEALARRM
                     GTPLGTVKSWVRRGLAKLKGCLAT"
     gene            734..1456
                     /locus_tag="VHN39_10635"
     CDS             734..1456
                     /locus_tag="VHN39_10635"
                     /inference="COORDINATES: protein motif:HMM:NF021604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor"
                     /protein_id="HEX2816845.1"
                     /translation="MSEAPELTESEAFAAEHALGVLTSAERRQAEARMAADSAFAAQV
                     EAWRERLEPMTDNLAAIPAPHALWLRIERSLGANDNSASVKSLRFWRGATASSLTLAA
                     ASIAAAVMLGNRPPVVIHPPPVGQLLNASLVSQSGAPVPLFVAAYDPVRKALIVTSLV
                     TPGNDPAHVHELWVIPADGKPRPLGILEPGKTKAMPMPESLLPSLAAGSALAVSVEPP
                     GGSPKVDAPSGPITAVGKLAKI"
     gene            1547..2131
                     /locus_tag="VHN39_10640"
     CDS             1547..2131
                     /locus_tag="VHN39_10640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fasciclin domain-containing protein"
                     /protein_id="HEX2816846.1"
                     /translation="MKYKIVSAGVFGIILAASFGTFANAQAPTAPMKAEKTVTVGGAP
                     MYPSKNIIQNAVNSKDHTTLVAAVKAAGLVDTLSGPGPFTVFAPTNAAFGKLPAGTVD
                     NLVKPENKATLTKILTYHVVSGRLSSADLMKTADMGMGKNTLTTVQGETLKVTAKGGA
                     VWLTDAKGGMSKVTIANVNQSNGVIHVVDTVLMP"
     gene            complement(2174..2458)
                     /locus_tag="VHN39_10645"
     CDS             complement(2174..2458)
                     /locus_tag="VHN39_10645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816847.1"
                     /translation="MLKTLLPLVALGALALTALPAAAQSGGPTPKEQVGIHTGTQTTN
                     GSAVMVTDQNGIHPEGYPGMAVRNRASGDPAPAHHRHHRKHHETTEPAPG"
     gene            complement(2518..4572)
                     /locus_tag="VHN39_10650"
     CDS             complement(2518..4572)
                     /locus_tag="VHN39_10650"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2816848.1"
                     /translation="MPVARSCPGHVTPWAVAALLMSAAAPAALAAEAPAPSTAPASVI
                     SYPPSFFAPMGLNTAYDMVLRIPGFSFDDGSSVRGFAGAAGNVLIDGQRPASKTDDLI
                     SVLTRLPIGQVERIDLIRGAQPGIDMQGKTIVANVIRRKDRGFTGVAAVGQYTTGDGY
                     TDPQVRVEGTWRLDGRTVEASLRTFKGHDSSEGSGPHQILGSSGQGLDSSEMRNAAPT
                     RIYEGTAAYETPLLGGKLRTNLILEDQTNDLDSGDDFRLAGRQVERVRSDQTDGEFGI
                     HYNRDLRSGLALEILGLQHLDKTGSNSVFDTPTDDQRFSLSHLGGESIGRGIVHWRPS
                     EALTVDAGGEFAYNWLKVRTSFSDNGAPIRIPAADVQIDEARGEVFATATWRPVTTLA
                     VEAGARIEDSKISSSGDVTLSKTVAYPKPRIVVTWSPDASDQLRLRVEREVGQLDFSA
                     FVASAALNANGVVAGNPNLSPQQDWTFEAAYDRRFWTDGVISLTARHLVLKDVVDRAP
                     VFGASGVFDQPANIGGGREDDLVASFNLPLGRFGIPGGALRGLGTWRVSRVTDPTTEQ
                     SRRISGQHPLDAELHFSQNLPRWKLSWGMDASFRYLERFYRFDEIDSNRANTVYTLFA
                     DYKFAPDLTLRVQTDLVRSHFIATREVFAGPRSLDPLQFLDVQNHGFGPIIFTRLRKT
                     FG"
     gene            complement(4621..>5041)
                     /locus_tag="VHN39_10655"
     CDS             complement(4621..>5041)
                     /locus_tag="VHN39_10655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816849.1"
                     /translation="GHDTALLFAFSMLRDLAPYGKGAALEAFKLSREAIADREAASAA
                     GPLNLAAALLALARPGATPAAVLPMASSDTLRWRLQALLETGGPAPNLSWPQVAPGLA
                     LSLALVATPALQLELGRFVCHGCSAHAGKLLGLFLTC"
BASE COUNT          825 a         1694 c         1712 g          810 t
ORIGIN      
        1 gcaagaccga gcgcctggcc gccgcccagg ccaagcgcgc cgcggcccgc aagcccaaga
       61 aggtcgccgc ctgattgggg ccgcatagtt ttgtggcatc cggcttgggt ggtagggttg
      121 ctcccgacct gcgaaacgtc cagccttagc atccacgccc agcgagactt gagcccgcaa
      181 acttggccgc cgcgaccacc cccgaagacc tggctcacct gatgacgcgc gtcgccacgg
      241 gtgaacgcgc ggcgttgcga cagctttatg atgcaacctc agcgaagctt ttcgccgtct
      301 gcctacgtat cttgtccgac cgcgaagaag ccgaggacgt tttgcaagag gtctatgtca
      361 cagtttggcg tcgagccgac cgtttcgacg ggtcgcgtgc gagcgtcatg acgtgggtct
      421 ccacgatcgc ccgcaaccgg tcgatcgacc ggctccgcgc ccgcggcccc ctggcctacg
      481 ccgaccaggt cgaggacctc gacatcgccg atggcggcgt cagcgccgag gcccttctgg
      541 tcaccgccgg cgaggaaggc cggctgcacc attgtttgtc tgaactcgac gaccgcaccg
      601 aaaaggtgat ccggaccgcc ttcttcgaag gcgtcaccta tgaagccctg gcgcgccgga
      661 tgggcacgcc tctgggcact gtaaagagct gggttcgccg gggcctcgcc aagcttaagg
      721 gttgtctcgc gacatgagcg aagctcccga actcaccgaa tccgaggcct ttgcggccga
      781 acacgccctg ggcgtcctga catcggccga gcgacgccag gccgaggcgc ggatggccgc
      841 cgacagcgcc ttcgccgccc aggtcgaggc ctggcgcgag cgtctggagc cgatgaccga
      901 caatctcgcc gcgatcccgg cgccgcacgc gctgtggctc cgcatcgagc ggtccctggg
      961 cgccaacgac aactctgcct cggtgaagag cctgcgcttc tggcgcgggg ctaccgccag
     1021 ttcgctgacc ctggccgccg ccagcatcgc cgcggccgtc atgctcggca accgcccgcc
     1081 ggtggtgatc catccgccgc cggtcggcca actattgaac gccagcctgg tcagccagtc
     1141 tggcgccccg gtgccgcttt tcgtcgcggc ctacgacccg gtccgcaagg cgctgatcgt
     1201 cacctcgctg gtgacccccg gcaacgatcc ggcccacgtc catgagctgt gggtgatccc
     1261 ggccgacggc aagccccggc cgctgggcat cctcgagccg ggcaagacca aggccatgcc
     1321 gatgccggaa agcctgctgc cctcgctggc cgcgggctcg gcgttggccg tctccgtcga
     1381 accgcccggc ggctcgccga aggtcgacgc accgtccggc ccgattacag ccgtcggaaa
     1441 gctcgccaaa atataaatca aggatggtcg catccaaatt cggatgctgc ccggtaatcc
     1501 cttgcagagc tgatcacggt gatcagcaag aaagggacta tctactatga agtacaaaat
     1561 cgtttcggcc ggcgtgttcg gcattatctt ggctgcgtcg ttcggaacct tcgccaacgc
     1621 tcaagcgccg acggctccga tgaaagccga gaagaccgtg acggtgggcg gcgcgcccat
     1681 gtatccgtcc aagaacatca tccagaacgc ggtaaattcg aaggatcaca ccaccttggt
     1741 ggccgcggtg aaggccgcgg gcctggtgga cactctgtcg ggccccggtc cgttcacggt
     1801 gttcgccccc accaacgccg ccttcggcaa actacccgcc ggcacggtcg acaacctggt
     1861 gaagcccgag aacaaggcga cgctcaccaa gatcctgacc taccacgtgg tttccgggcg
     1921 gctgagctcg gccgacctga tgaagaccgc cgacatgggc atgggcaaga acacgctgac
     1981 gaccgtgcag ggggagaccc tgaaggtcac cgccaagggc ggcgccgtct ggctcaccga
     2041 cgccaagggc ggcatgtcca aggtcaccat cgccaacgtc aaccagtcca acggcgtcat
     2101 ccacgtcgtc gacacggtgc tgatgcccta acgccctgcg ccctctccgc gaaggggagg
     2161 gcgcctggtc cgcctagccc ggcgccggct cggtggtctc gtgatgcttg cggtgatggc
     2221 ggtgatgcgc cggcgcgggg tcgcccgagg cccggttgcg aacggccatc cccggatagc
     2281 cttcgggatg gatgccgttc tgatcggtca ccatcacggc cgagccgttg gtggtttgcg
     2341 tcccggtgtg gatgcccacc tgctccttcg gcgtcggtcc gccggactgc gccgccgccg
     2401 gcaaggcggt cagcgccagg gcgcccagcg cgacgagggg aagaagtgtc ttcagcatga
     2461 tctggtctcc gaacttcagt gcgcacagaa cgggcggccc gcgtccaggt tgcgaggtca
     2521 gccgaaggtc ttgcgcagcc gcgtgaagat gatcgggccg aacccgtggt tctggacgtc
     2581 gaggaactgc agggggtcca ggctgcgtgg cccggcgaag acctcgcggg tggcgatgaa
     2641 atggctgcga accaggtcgg tctggacgcg cagggtcagg tcgggggcga acttgtagtc
     2701 ggcgaacagg gtgtagaccg tgttggcccg attgctgtcg atctcgtcga accggtagaa
     2761 ccgctccagg tagcggaagc tggcgtccat cccccagctc agcttccagc gcggcaggtt
     2821 ctggctaaag tgcagctcgg cgtcgagcgg atgctgtccg gaaatccggc gggactgttc
     2881 ggtggtcgga tcggtaacgc gcgacacgcg ccaggttccc agaccccgca gcgctccgcc
     2941 gggaatgccg aaccggccga ggggcaggtt gaaggaggcc acaaggtcgt cctcccgccc
     3001 gccgccgatg ttggccggct gatcgaagac gcccgaggct ccgaacaccg gcgcgcggtc
     3061 gacgacgtct ttcaggacca ggtggcgggc tgtcagagaa atcaccccgt ctgtccagaa
     3121 gcgccggtcg tacgccgcct cgaacgtcca gtcctgctgc ggcgacaggt tggggttgcc
     3181 ggcgaccacg ccgttggcgt tgagcgccgc gctggccacg aaggcgctga agtcgagctg
     3241 gcccacctcg cgctccaccc gcaaacgcag ctggtcgctg gcgtctggcg accaggtcac
     3301 cacgatcctc ggcttgggat aggcgacggt cttggagagc gtcacgtccc ccgacgagga
     3361 gatcttcgaa tcctcgatcc gcgcgccggc ttcgaccgcg agcgtggtca ctggccgcca
     3421 agtggccgtc gcaaagacct cgccgcgtgc ctcgtcgatc tgcacgtcgg cggccgggat
     3481 gcggatcggc gcgccattgt cgctgaagct ggtgcgcacc ttcagccagt tgtatgcgaa
     3541 ctcgccgccc gcatcgacgg tgagcgcctc ggacggccgc caatggacga tcccgcgccc
     3601 gatgctctcg ccccccaggt gcgaaaggct gaaccgctgg tcgtcggtgg gcgtgtcgaa
     3661 gacagagttg gagccagtct tgtccaggtg ttgcagcccc aggatctcca gcgccaggcc
     3721 gctcctgagg tcgcgattgt agtggatccc gaactcgccg tcggtctggt cgctacgcac
     3781 ccgttccacc tgccggccgg cgaggcggaa gtcgtcgccg ctgtcgaggt cgttggtctg
     3841 atcctccagg atcaggttcg tacgcagttt cccgccaagc agcggggtct cgtaagcggc
     3901 cgtgccctcg tagatccgcg tgggtgcggc gttgcgcatc tccgaactat cgaggccttg
     3961 gccgctcgat ccgagaatct gatgcggccc gctgccctcg ctgctgtcgt ggcccttgaa
     4021 ggtgcgtagc gaggcctcga cggtgcgtcc gtccagccgc catgttccct ccacgcgcac
     4081 ctgaggatcg gtgtagccat cgccggtcgt gtattggccc accgccgcga cgcctgtgaa
     4141 gccccggtct ttccggcgga tgacattggc cacgatggtc ttgccctgca tgtctatgcc
     4201 gggctgagcg ccgcggatta ggtcgatccg ctcgacctgg ccgatgggca aacgggtcaa
     4261 gaccgagatc aggtcgtcgg tcttgctggc gggtcgctgg ccgtcgatca gcacattgcc
     4321 cgccgcgccg gcgaagcctc ggacggagct gccgtcgtcg aaggagaagc cggggatgcg
     4381 caggaccatg tcgtaggccg tgttcaggcc catgggcgcg aagaacgacg gcggatagct
     4441 gatcacgctg gcgggagctg tggagggggc cggcgcttcg gccgccagtg cggccggtgc
     4501 ggccgcgctc atcagcaggg cggccaccgc ccatggggtc acgtgccccg ggcaactcct
     4561 ggcgacaggc atcggcaagc tccacagttc caagcgcctc gccaggaact gctaacctac
     4621 ttagcaggtg aggaaaagcc ccaatagctt gccggcgtgg gcgctgcagc cgtggcagac
     4681 gaagcgaccc agttcgagct ggagggcggg cgtggccaca agcgccagac tgagcgccag
     4741 tccgggggcg acctgtggcc acgagaggtt tggcgccggc ccgccggtct cgagcagggc
     4801 ctgcaggcgc cagcgcaggg tgtcagaact ggccatgggc aagacggcgg cgggcgtcgc
     4861 gcccggccgc gccagggcga ggagcgcggc ggcgagattg agcggtccgg ccgcagaggc
     4921 ggcctcgcga tcggcgatgg cctcgcggga cagcttgaac gcttccagcg ccgcgccttt
     4981 tccgtaaggc gcgaggtcgc gcagcatcga gaaggcgaac agcagggcgg tgtcgtggcc
     5041 c
//
LOCUS       DATAJL010000559         5270 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35632,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000559 DATAJL010000000
VERSION     DATAJL010000559.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5270
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35632"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..549
                     /locus_tag="VHN39_10660"
     CDS             <1..549
                     /locus_tag="VHN39_10660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003168797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication and repair protein RecF"
                     /protein_id="HEX2816850.1"
                     /translation="AEARATTLTALQAEIDGRGERPFPQAKLSLTGEWEQLSAAGAAI
                     ADIEAKLVRALADARPRDAAAGRALTGPHRGDLAVIHAEKDRPAAECSTGEQKALVLN
                     LVLAQAARLARTGRSSPSPILLLDEVAAHLDARRRGALFDEIEALGLQAFLTGTDDHL
                     FEALKSRAQGVRVEGAELAAIG"
     gene            635..1294
                     /locus_tag="VHN39_10665"
     CDS             635..1294
                     /locus_tag="VHN39_10665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816851.1"
                     /translation="MSTPKLGDFYVGVIGLFSVFLPGGFLMAALVLAVPPSYSAFFAP
                     LLTTVAEQSAAFVFCAYALGALIFLPASQLDSLLYDPYRRRKWPKDEDHAYKLATALR
                     GQVFPGPTDDDSPMNTFAWSQALLLLHAPAAFAEIQRFEAESKFFRSLIIALPLSGML
                     ALARSQWIELPLTVVIAGLCFLRYAERRHKSTEWAYRYAIALQMSPAAIAASSLRAVA
                     A"
     gene            1500..3965
                     /gene="gyrB"
                     /locus_tag="VHN39_10670"
     CDS             1500..3965
                     /gene="gyrB"
                     /locus_tag="VHN39_10670"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009330 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) complex [Evidence
                     IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEX2816852.1"
                     /translation="MSEENDDPHGPESSHGQGPTPENNGQDDYGAESIKVLKGLDAVR
                     KRPGMYIGDTDDGSGLHHMVYEVVDNAIDETLAGWATRVEVILNADGSVTVTDDGRGI
                     PVDIHEGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSERLELKIYR
                     GGKSYEMAFRHGDSVSPLKETGDAPMRENGHPLSGTEVTFLPSLQTFAFIDFDVKTLE
                     HRLRELAFLNSGVTIWLKDNRGAEPFVEVMHYEGGVEAFVRHLDKAKTPLLKAPIVIR
                     GKRENVEIDLSLWWNDGYHENVLCFTNNIPQRDGGTHLAAFRSALTRIITGYAETSGA
                     AKREKVSVGGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGLVGEGLGSW
                     FEEHPAEARLIVQKIAEAAAAREAARKARELTRRKSALDISSLPGKLADCAEKDPAKS
                     EIFIVEGDSAGGSAKQARNRDNQAILPLRGKILNVERARFDKMLGSEQIGTLITALGA
                     GIGSEDFDIEKIRYHKIVLMTDADVDGAHIRTLLLTFFYRQMREVIDRGYLYIAQPPL
                     YKASKGKSVRYLKDDAELEIYLIDEGVDGATLDLSNGERITGADLLAMVQTARGAKAN
                     VERLAARAPAFAIEQAALAGLLAPGGDLAKAAARLDLYAEEGDGAWSGAPGEQNSFVF
                     SRVKRGVSEKVVLDELLLHAADARRLAERSKELAVIFEGRATYTRRDRATVVRGPIDL
                     VNAVMDNGRRGLAVQRYKGLGEMNADQLWETTLDADARTLLQVKVNHADDADDMFTRL
                     MGDLVEPRREFIQENALDAEVDV"
     gene            4063..4371
                     /locus_tag="VHN39_10675"
     CDS             4063..4371
                     /locus_tag="VHN39_10675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816853.1"
                     /translation="MRIALAFPLILALGLAGAAGAQPAASLADSHAQTVSTAVSLQKA
                     EPVSLQARAQPENPEAAAALLIAIRHAKDLERMAKLACAAGDTSKCQAPKAATSAPSS
                     "
     gene            complement(4368..>5270)
                     /locus_tag="VHN39_10680"
     CDS             complement(4368..>5270)
                     /locus_tag="VHN39_10680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816854.1"
                     /translation="AAEKAPPRRSTLTDRALTVDIVDMSPRFLAWYAAAKDVPDPDAR
                     FKLWQDLYGFAAAPPGPAGEAMSRKLVDNAWPRYAEALAPAEAGAAGMQPQPMAILQK
                     VATVLGLKDPVHIQLITYIGGFEDNAFAYRGELPTVAIPLESKPEMRKLFVAHEGTHA
                     IHMEVARLSGGWERSVAATMLQEGLAMHVTREVFPGLPIETYVSFAPGWWTGSQAKER
                     AILQDLRGKLDQSDGATVMSVTIAVAPASGLNREAYYGGWRAVEQMRKDGLSLADIAR
                     IPEAEMPARVGKAVDELLAARDAR"
BASE COUNT          868 a         1831 c         1760 g          811 t
ORIGIN      
        1 gccgaggcgc gcgccacgac actaaccgcc ctgcaggccg agatcgacgg ccggggcgag
       61 cggcccttcc cgcaggcgaa actctccctc accggtgagt gggagcaact atccgctgca
      121 ggggccgcga tcgccgacat cgaagcgaaa ctggtccgcg cgctggccga tgcacggccc
      181 agagacgccg ccgccggccg cgcgctcacc ggcccgcacc ggggcgatct ggccgtgatc
      241 cacgccgaaa aggaccgtcc cgccgccgag tgttcgaccg gcgagcagaa agcgctggtg
      301 ctcaatctgg tgcttgccca ggctgcgcgg ctggcgcgca ctgggcggag ctccccttcg
      361 cccatcctgc tgctggacga agtcgccgcc cacctggacg cgcggcgccg cggcgcgctc
      421 ttcgacgaga tcgaggccct cggcctgcag gccttcctca ccggaaccga cgaccatctg
      481 ttcgaggccc tgaagagccg cgcccagggc gtgcgggttg agggcgcaga actggcggcg
      541 atcggctgag gcgaccagcc agtcagcgtc atcttgacgc cacgactgag aggaccaccc
      601 ttgcgaggct cgatcaagct tggaggacca gcccatgtcc acgccgaagc tgggcgactt
      661 ctatgtcggg gtgatcggac tcttctcggt gtttctgccc ggcggcttcc tgatggcggc
      721 gctggtcctg gcggtcccgc cgtcctacag cgcgttcttc gcgccgctgc tgaccactgt
      781 cgcggagcag tcggccgcct tcgtcttctg cgcctacgcc ctgggcgcct tgatcttcct
      841 gccggccagc cagctcgaca gtcttctgta cgatccctat cgccggcgga aatggccgaa
      901 ggatgaggat cacgcctaca aactggcgac ggcgctgcgg ggtcaggtgt tccccgggcc
      961 gaccgacgac gacagcccga tgaacacctt cgcctggtcc caggcgctgc tcctgctgca
     1021 tgcgccagca gcattcgcgg aaatccagag gttcgaggcg gagtcgaagt tctttcgatc
     1081 cctgatcata gcgctgccgc tctcagggat gctcgccctc gcccgctctc agtggatcga
     1141 acttcctctc accgttgtca tcgccggcct ctgtttcctc cgctacgcag agcggcgaca
     1201 caagagcaca gagtgggcct atcgttacgc gatcgccttg caaatgagcc ccgcggcgat
     1261 cgcagcgagc tcgctgcggg ctgtcgccgc ctgacctgag cacacgcgcg gccagacgcc
     1321 acgcaatcca ccacgcaaca ggtgcgtttt cggccccgga accctatatt cacggggaga
     1381 ttcggccggc gcatcgccgg ccgacgatcc ggcgcggtct tcgccctgga ttcatacctc
     1441 gcggcccggc caggagcgtc tgtgaacaga ccttccggcc ccgcccagct ggacacaaga
     1501 tgagcgaaga gaacgacgat ccgcacggcc ccgagtcttc ccatggccag ggtcccacgc
     1561 ctgagaacaa cgggcaggac gactatggcg cggagtcgat caaggtcctg aagggcctgg
     1621 acgcggtgcg caagcgcccg ggcatgtaca tcggcgacac cgacgacggc tcgggcctgc
     1681 accacatggt ctatgaggtg gtcgacaacg ccatcgacga gaccctggca ggttgggcga
     1741 cccgcgtgga ggtgatcctc aacgccgacg gctcggtcac cgtcaccgac gacggccgcg
     1801 gcatcccggt ggacatccac gagggcgagg gcatctcggc ggccgaggtc atcatgaccc
     1861 agctgcacgc cggcggaaaa ttcgaccaga actcctacaa agtcagtggc ggcctgcatg
     1921 gggtcggtgt ctcggtggtc aacgcgctct ccgagcggct cgagttgaag atctatcgcg
     1981 gcggcaagtc ctacgagatg gcgttcaggc acggggattc ggtgtccccg ctgaaggaga
     2041 ccggcgacgc gcccatgcgc gagaacggcc atccgctgtc tgggacggaa gtcacattcc
     2101 tgccgtcgct gcagaccttc gccttcatcg acttcgacgt gaagacgctg gagcaccggc
     2161 tgcgcgagct ggcgttcctg aactccggcg tgaccatctg gctgaaggat aatcggggcg
     2221 ccgagccctt tgtcgaggtc atgcattacg agggcggcgt cgaggctttc gtgcgccacc
     2281 tcgacaaggc caagactccg ctgctcaagg ccccgatcgt catccgcggc aagcgtgaga
     2341 acgtcgagat cgacctctcg ctctggtgga acgacggcta ccacgagaac gtgctctgct
     2401 tcaccaacaa catcccgcag cgggacggcg gcactcacct ggcggccttc cgctcggcgc
     2461 tcacccggat catcaccggc tatgcggaga cctccggcgc ggccaagcgc gaaaaggtct
     2521 cggtgggcgg ggaagacgcc cgcgagggcc tgacctgcgt gctctcggtc aaggtgccgg
     2581 accccaagtt ctcgtcgcag accaaggaca agctggtctc ctccgaagtg cgcccggctg
     2641 tcgagggcct ggtgggtgag ggcctcggct cctggttcga ggaacatccc gccgaagccc
     2701 gcctgatcgt ccagaagatc gccgaggcgg cggcggcgcg cgaggccgcc cgcaaggccc
     2761 gcgaactgac ccggcgcaag tcggcgctgg atatctcgtc gctgcccggc aagctcgccg
     2821 actgcgcgga gaaggacccg gccaagtcgg agatcttcat cgtcgagggc gactccgccg
     2881 gcggctcggc caagcaggcc cgcaaccgcg ataaccaggc catcctgccg ctcaggggca
     2941 agatcctgaa cgtggagcgc gcgcggttcg acaagatgct ggggtccgag cagatcggca
     3001 ccctgatcac cgcgctgggc gccggcatcg gctcggaaga cttcgatatc gagaagatcc
     3061 gctaccacaa gatcgtgctg atgaccgacg ccgacgtcga cggcgcccac atccgcaccc
     3121 tgctgctcac attcttctac cggcagatgc gcgaggtgat cgaccgcggc tacctctata
     3181 tcgcccagcc gccgctctat aaggcgtcca agggcaagtc ggtccgctac ctgaaggacg
     3241 acgcggagct ggaaatctac ctgatcgacg agggcgtcga cggggccacg ctggatctct
     3301 ccaacggtga acggatcacc ggcgcggatc tgctggccat ggtgcagacc gcccgcgggg
     3361 cgaaggccaa tgtcgaaagg ctggccgctc gcgccccggc cttcgccatc gaacaggcgg
     3421 cgctggccgg cctgctagcc cccggcggcg acctggccaa ggccgccgcg cgcctcgacc
     3481 tctatgccga ggagggcgac ggggcctgga gcggcgcgcc gggcgaacag aacagcttcg
     3541 tgttctcccg cgtgaagcgc ggcgtttccg agaaggtcgt gctggacgaa ctgctgctgc
     3601 acgccgccga cgcgcgtcgt ctggcggaac gctccaagga gctggcggtg atcttcgagg
     3661 gccgcgccac ctacacccgc cgcgaccgcg ccaccgtggt ccgcgggccg atcgatctgg
     3721 tcaatgcggt gatggacaac ggccggcgcg gcctcgctgt ccagcgctac aagggcctgg
     3781 gcgagatgaa cgccgaccag ctctgggaaa ccacgctgga cgccgacgcc cgcaccctcc
     3841 tgcaggtcaa ggtcaaccac gccgacgacg ccgacgacat gttcacccgc ctgatgggcg
     3901 acctggtcga gccgcgccgc gagttcatcc aggaaaacgc cctcgacgcc gaggtggacg
     3961 tctaggggca gggcgccgcg ccggccggaa gaatgatctg gatcaatttc cagtcacccc
     4021 ggccttccta ggctggctcc gcatcaacct gcggagttca tcatgcgcat cgcgctcgcc
     4081 ttccccctga tcctcgccct cgggctcgcc ggcgccgcgg gggctcagcc ggccgcatcc
     4141 ttggcggaca gtcacgccca gaccgtctcg accgccgtgt cgctacagaa ggccgagccc
     4201 gtctctctgc aggctagggc ccagcccgag aacccagagg cggccgcggc tctgctgatc
     4261 gcgatccgcc atgcgaaaga tttggagcgg atggccaagc tggcctgcgc cgccggggac
     4321 accagcaagt gtcaggcgcc gaaggcggcg acgtcggcgc cctcgtccta gcgggcgtcc
     4381 cgcgccgcca gcagttcgtc cacggccttg ccgacccggg ccggcatctc agcctccggg
     4441 atgcgggcga tgtcggcgag gctcaggccg tccttgcgca tctgctccac cgcgcgccag
     4501 ccgccgtagt aggcttcgcg gttcaggccg ctggccggcg ccacggcgat ggtgacgctc
     4561 atcacagtcg cgccgtcgct ctggtccagc ttgcccctca ggtcctggag gatggcgcgc
     4621 tccttggcct ggctacccgt ccaccagccg ggcgcgaagg agacataggt ctcgatcggc
     4681 aggcctggga agacctcgcg ggtcacgtgc atggccaggc cttcctgcag catggtggcg
     4741 gccaccgagc gctcccagcc gccggagagc ctggcgacct ccatgtggat ggcgtgggtc
     4801 ccttcgtggg ccacgaagag cttacgcatc tcaggcttgc tctccagcgg gatcgccacg
     4861 gtcggcagtt cgccgcgata ggcgaaggcg ttgtcctcga agccgccgat gtaggtgatc
     4921 agctggatgt ggaccgggtc cttcagtccg agcacggtgg cgaccttttg caggatcgcc
     4981 atgggctggg gctgcatgcc cgccgcgccg gcctcggctg gcgcgagcgc ctcggcgtag
     5041 cggggccatg cgttgtccac cagcttgcgc gacatcgcct cgcccgcggg gcccggaggc
     5101 gccgcggcga aaccatagag gtcctgccaa agcttgaagc gggcgtcggg gtcggggaca
     5161 tccttggcgg cggcgtacca ggccaggaag cgagggctca tgtcgacgat gtcgacggtg
     5221 agcgcgcggt cggtgagggt cgaacgcctg gggggagcct tttcggccgc
//
LOCUS       DATAJL010000560         3365 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_82814,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000560 DATAJL010000000
VERSION     DATAJL010000560.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3365
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82814"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VHN39_10685"
     CDS             complement(<1..312)
                     /locus_tag="VHN39_10685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX2816855.1"
                     /translation="MAQASPATPVIILNAPQLGENIGAAARVMANFGLSQLRLVNPRD
                     GWPNERAWSAASGADWPLNAARVFESVEDAVADLNLLYATTARPRELQLPILTPRQAA
                     QN"
     gene            311..1369
                     /gene="bla"
                     /locus_tag="VHN39_10690"
     CDS             311..1369
                     /gene="bla"
                     /locus_tag="VHN39_10690"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008800 - beta-lactamase activity
                     [Evidence IEA];
                     GO_process: GO:0030655 - beta-lactam antibiotic catabolic
                     process [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class A beta-lactamase"
                     /protein_id="HEX2816856.1"
                     /translation="MTRLQSLDGRSASLGRRDLLIGGAGLALGACGQDKPMTASRTPR
                     LDMKRLDKEVAALAARAAPGVLGFGLMNLESGEFWVRLGDRTFPMQSVFKLPLACAVL
                     SEVDAGRLKLAETLTLTDQTLSPSWSPIADAWPGRTTYTALELLTAAVSNSDNTAADL
                     LMKRIGGPGAVSGWLQQKKVEEIRVDRYERELQPNVYGMASFRAAWKGEAAFNAAKAT
                     VPPATRHAAMLAYMADPRDSSTPRGMLGFLRKFDEGELLSPASTRQLLTIMLASPRGA
                     ERLKAGLPRDASFAHKVGTSGTDQGLNAAYNDVGIFTLADRRSYAIAAFLTGSTALEA
                     NRATLFADLGRVAVHSVG"
     gene            1466..2680
                     /locus_tag="VHN39_10695"
     CDS             1466..2680
                     /locus_tag="VHN39_10695"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006102 - isocitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEX2816857.1"
                     /translation="MAKIKVANPVVDIDGDEMTRIIWQWIKDKLIFPFVDVELDYYDL
                     GMENRDATDDKVTIEAAEAIQRHGVGVKCATITPDEARVKEFNLKQMWKSPNGTIRNI
                     LGGVVFREPIICKNVPRLVPGWTQPIIIGRHAYGDQYRATDFRVPGPGKMTLTWVGEN
                     GDKIEREVFNYPGAGVALAMYNLDDSIRDFAHASFAYALARKYPLYLSTKNTILKAYD
                     GRFKDIFQEVYDAAYVDQFKAAGLTYEHRLIDDMVAAAMKWSGGYVWACKNYDGDVQS
                     DTVAQGFGSLGLMTSVLITPDGKVMEAEAAHGTVTRHYRQHQKGEATSTNSIASIFAW
                     TQGLKHRAKLDNNPELTRFADTLEKVCVSTVESGSMTKDLALLVGDTQGWLTTEGFID
                     KVALNLEKALVA"
     gene            2748..3128
                     /locus_tag="VHN39_10700"
     CDS             2748..3128
                     /locus_tag="VHN39_10700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816858.1"
                     /translation="MTIGYITLGAPDVEASLPFYDAVLGVVGYARGPLDGGWAFYGKD
                     GAPGIGICKPHDGQAARGGNGIMIAFKADSLDQVKAAYDSALANGGTDEGPPGYRPAE
                     ATSGFYGAYFRDAAGNKLCAFTQT"
     gene            complement(3144..>3365)
                     /locus_tag="VHN39_10705"
     CDS             complement(3144..>3365)
                     /locus_tag="VHN39_10705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HEX2816859.1"
                     /translation="VIALVSSAEGKAAVAVAVTGSAQAKFNAVELAKAAVLAMGGQGA
                     GGRPDFAQGGAPDGAKAAEGLAAIKAALV"
BASE COUNT          576 a         1181 c         1100 g          508 t
ORIGIN      
        1 gttctgcgcc gcctggcgag gcgtcaggat cggcagctgc agctcccggg gccgcgccgt
       61 cgtcgcatag agcaggttga ggtcggcgac ggcgtcctcg acgctctcga acacgcgggc
      121 ggcgttcagc ggccaatcgg cgcccgaggc cgcggaccag gcgcgctcgt tcggccagcc
      181 gtccctcgga ttgaccagcc gcagctgcga aagcccgaag ttcgccatga cgcgcgcggc
      241 cgcgccaatg ttctctccga gctgtggcgc gttgaggata atgacaggtg tcgcaggaga
      301 ggcttgagcc atgacgcggt tacaatcgct tgacgggcgg agcgcaagcc tcggcaggcg
      361 cgatctcctg atcggcggcg cgggcctggc gctcggggcc tgtgggcagg acaagcccat
      421 gaccgcttcg cgcacccccc ggctcgacat gaagcgcctc gacaaggagg tcgccgccct
      481 ggcggcgcgc gccgcgccgg gggtcctggg ctttggcctg atgaacctgg agagcggcga
      541 gttctgggtg cgactgggcg accggacctt ccccatgcag agcgtcttca agctgcccct
      601 ggcctgcgcc gtgctctccg aggtggacgc cgggcggctg aagctcgccg agaccctgac
      661 cctcaccgac cagacgctgt cgccctcatg gtctccgatc gccgacgcct ggccgggccg
      721 cacgacctac accgctcttg agctcctcac cgccgccgtc agcaacagcg acaacaccgc
      781 tgcggacctg ctgatgaagc gcatcggcgg cccgggcgcg gtcagcggct ggctgcagca
      841 gaagaaggtc gaggaaatcc gcgtcgaccg ctacgagcgc gagctgcagc ccaatgtcta
      901 cggcatggcg tccttccggg cggcctggaa gggcgaggcg gccttcaacg cggccaaggc
      961 caccgtgccg ccggcgacgc gtcacgccgc catgctggcc tatatggccg atccgcggga
     1021 ctcatcgacg ccgcgcggca tgctggggtt cctgcgcaaa ttcgacgagg gtgaactcct
     1081 gtcaccggcc tccacccgcc agttgctcac catcatgctg gccagcccgc ggggcgccga
     1141 gcgcctcaag gccggccttc cgagggacgc cagcttcgcc cacaaggtcg gcacatcggg
     1201 cacagaccag ggcctgaacg ccgcctataa cgacgtcggt atcttcaccc tggccgaccg
     1261 ccgcagctac gccatcgcgg ccttcctgac cggctcgact gcgctggagg ccaatcgcgc
     1321 caccctattc gccgaccttg gccgggtcgc ggtccatagc gtcggctgac ccgcacgaca
     1381 gccgtgctgg cctccagcct ttgcgtccgc cccggcgaag gctatacggc cccaaactca
     1441 agttcgcgcg gagcgcctgc ccctcatggc aaagatcaaa gtggccaacc ctgtcgtcga
     1501 catcgacggg gacgagatga cccggatcat ctggcagtgg atcaaggaca agctgatctt
     1561 ccccttcgtg gacgtagagc tcgactacta cgacctgggc atggagaacc gcgacgccac
     1621 cgacgacaag gtgacgatcg aggcggccga ggcgatccag cggcacggcg tgggcgtcaa
     1681 gtgcgcgacc atcacgccgg acgaggcccg cgtgaaggaa ttcaacctca agcagatgtg
     1741 gaagtcgccc aacggcacca tccgcaacat cctgggcggc gtggtctttc gcgagccgat
     1801 catctgcaag aacgtgccgc gcctggtgcc cggctggacc cagccgatca tcatcggccg
     1861 ccacgcctat ggcgaccagt accgcgccac cgacttcagg gtgcccggcc ccggcaagat
     1921 gaccctgacc tgggtcggcg agaatggcga caagatcgaa cgcgaggtgt tcaactaccc
     1981 cggcgccggc gtggcgctgg ccatgtacaa cctcgacgat tcgatccgcg acttcgccca
     2041 cgcctccttt gcctatgcac tcgcccgcaa atacccgctc tatctctcca cgaagaacac
     2101 gatcctcaag gcctatgacg ggcgcttcaa ggacatcttc caggaggttt atgacgcggc
     2161 ctacgtcgac cagttcaagg ccgcgggcct gacctacgag caccgcctga tcgacgacat
     2221 ggtggccgcc gccatgaagt ggtcgggcgg ctacgtctgg gcctgcaaga actacgatgg
     2281 cgacgtgcag tccgacacgg tggcgcaggg gtttgggtcg ctgggcctga tgacctcggt
     2341 gctgatcacg cctgacggca aggtcatgga ggccgaggcc gcgcacggca cggtcacccg
     2401 ccactaccgc cagcaccaga agggcgaggc cacctccacc aactccatcg cctcgatctt
     2461 tgcgtggacg caagggctga agcaccgcgc caagctcgac aacaatcccg agctgacccg
     2521 cttcgccgac acgctcgaaa aggtctgcgt ttcgaccgtc gagagcggct cgatgaccaa
     2581 ggacctggcg ctcctggtcg gcgacaccca gggctggctg accaccgagg gcttcatcga
     2641 caaggtggcg ttgaacctgg aaaaggcgct ggtcgcctag ggtcgtttgt tcttgcttcg
     2701 ttccttgcat tcgttagggt aagcgctctg acggacgagg aacggacatg acgatcggct
     2761 acatcaccct gggcgcgccc gacgtcgagg cgtcgcttcc cttctatgac gcggtgttgg
     2821 gcgtcgtggg ctacgcacgc gggccgctgg acggcggctg ggcgttctac ggcaaggacg
     2881 gcgcgccggg catcgggatc tgcaaaccgc atgacggcca ggccgcgcgc ggcggcaacg
     2941 gcatcatgat cgccttcaaa gccgacagcc tggaccaggt gaaggcggcc tacgactcag
     3001 cgctcgccaa cggcggaacc gatgagggcc cgcccggcta ccggcctgcc gaggcgacca
     3061 gcggcttcta cggcgcctac ttccgcgacg cggctggcaa caagctctgc gccttcaccc
     3121 aaacctgatc cgggcggcct gacctagacc aacgcggcct tgatggcggc caggccctcg
     3181 gcggccttgg cgccgtcggg ggcgccgccc tgggcgaaat cgggacgccc gccggcgcct
     3241 tggccgccca tggccagcac ggcggccttg gcgagctcga cggcgttgaa cttcgcctgg
     3301 gctgagccgg tgacggccac cgccaccgcc gccttgccct cggccgagct gaccagggct
     3361 atgac
//
LOCUS       DATAJL010000561         5918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_48359,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000561 DATAJL010000000
VERSION     DATAJL010000561.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5918
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48359"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /gene="zapE"
                     /locus_tag="VHN39_10710"
     CDS             complement(<1..328)
                     /gene="zapE"
                     /locus_tag="VHN39_10710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AFG1/ZapE family ATPase"
                     /protein_id="HEX2816860.1"
                     /translation="MASALQAAYDARIASGEIRPDPAQGDGLRALIRLEADLAAAPAT
                     GGLKGLFRRPEAERGVYLWGPVGRGKSALMDLFFETAEVEKKRRIHFYAFMAEAHALV
                     NAWRNGD"
     gene            431..724
                     /locus_tag="VHN39_10715"
     CDS             431..724
                     /locus_tag="VHN39_10715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816861.1"
                     /translation="MADEDPIFDDTDEAASAQVTRRLEQGLGVGQRELSAQRDPEIDP
                     PLLAAKAEDDWGEPAAEGATYSANHATRGEKTGGQNGQGAKTRTANKDTVSRR"
     gene            complement(725..2221)
                     /locus_tag="VHN39_10720"
     CDS             complement(725..2221)
                     /locus_tag="VHN39_10720"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018478 - malonate-semialdehyde
                     dehydrogenase (acetylating) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEX2816862.1"
                     /translation="MRNITHFIDGASVAGTSDRFGDIFNPNTGEVQARVALATTGEVD
                     AAVASALRAQQVWSLVNPQRRARVMFDFKRLIERDMNELAELLSSEHGKVIADSKGDI
                     QRGLEVIEFACGIPHALKGEYTEGAGPGIDVYSMRQPLGVCAGITPFNFPAMIPMWMF
                     GISIAVGNTFILKPSEKDPSLPVRLGELMMEAGAPKGVLNVIHGDKVAVDAILDHPDI
                     KAVSFVGSSDIAHYVYSRGTAAGKRVQAMGGAKNHGIVMPDADLDQAVKDISGAAFGS
                     AGERCMALPVVVPVGAKTAEAFREKMLAEIETLKVGISTDAAAQYGPVVTAAHRQKIS
                     DYIQLGKDEGAELVVDGRGFSLQGYDKGFFIGPSLFDQVKPDMRTYQEEIFGPVLQIV
                     RADSFEEAVALPSKHQYGNGVAIFTRNGRAAREFASQVNVGMVGINVPIPVPVAYHSF
                     GGWKRSAFGDTNQHGMEGVRFYTKVKTITARWPDGSQEDSAFVIPTMK"
     gene            2324..2491
                     /locus_tag="VHN39_10725"
     CDS             2324..2491
                     /locus_tag="VHN39_10725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816863.1"
                     /translation="MQVSAIPTGPTYYQPVTAVPPVTPVVGRATGADDAGAKLRAAQP
                     AGIGSLLDMEA"
     gene            2560..3432
                     /locus_tag="VHN39_10730"
     CDS             2560..3432
                     /locus_tag="VHN39_10730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEX2816864.1"
                     /translation="MTVASPAQTLSRAQDRDHIIDVLIAERAPKLAASVAWPVLRPVL
                     YSFLDYGKARRMADAIALLSGRAALEHVSSLLGVRVTAMGLEHIPRKGRLIVVCNHPT
                     GIADGIAVYDALKAIRPDLCFYANSDAHRVAPRFSDVLIPVEWVEAKRTRERTRETLL
                     ATREVLEAERCLVIFPSGRLSRRQPDGRLSDPPWAPSAISLARRYETPIVPLHVAGPW
                     SRMFHLFNHFSSELRDVTLFHELLNKQGRAFALTVGAAIAPEALEGEPTEAIARLKAF
                     VETELAADPERAFA"
     gene            3429..3881
                     /gene="tsaE"
                     /locus_tag="VHN39_10735"
     CDS             3429..3881
                     /gene="tsaE"
                     /locus_tag="VHN39_10735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEX2816865.1"
                     /translation="MILADEAATARLGAAIARVLRSGESVCLSGPLGAGKSTLARALI
                     RALTTPTEDVPSPTFTLVQFYEGPQLKIAHFDLYRLTNPDEAYEIGLDEALDDGAAVI
                     EWPERLQGRLPSDRLDIEIAPMDSKDWGDGRSARLTPHGAWEGRRVDP"
     gene            3871..4962
                     /locus_tag="VHN39_10740"
     CDS             3871..4962
                     /locus_tag="VHN39_10740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEX2816866.1"
                     /translation="MTPEREAQKGRFLKEHGLAAARREPLAGDASTRSYVRLYPAGAK
                     PLILMDQPPVLETPIAPPGATDAERMALGYNAAARLAAGSVAAFVTTAAYLRDHGLSA
                     PRIVAFDVQAGLAVLEDLGDGLFATLIADGQAETPLYEAAVDVQVQLHEQRPPDILEA
                     EGVAWPLLTYDTLALKVATDTFLEWWPQFAGLEPFSPDAIAEWDALWAPVWVRGDAGA
                     SVFCHRDYHAQNLLWLPEREGTARVGLLDFQDALRAHPTWDLTHLLQDARRDVSPELE
                     ASMLDRYLAARPGLDRDQFLADYRALAASNAARILGRVFARQALLGRAQYKAFMPRTW
                     RYLERNLTDPALAGLKTWFDRYVPAGARA"
     gene            4959..5699
                     /locus_tag="VHN39_10745"
     CDS             4959..5699
                     /locus_tag="VHN39_10745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEX2816867.1"
                     /translation="MTARLDKSSPKTAMVLAAGLGTRMRPLTDNLPKALIPVAGRTLL
                     DRVLDKLVEAGVERAVVNVHHFADQVEAHLASRTDLEILISDERAGLLDSGGGIQHAR
                     ALLGEDPIFLANIDSLWLEGATPALEALKRAWDPGAMDLLLLLVARGNGIGFEGPQGF
                     LMDDAGRLTHSISPDVVTPFANVGFGILKPQVLDGQGGGAFSIYPTWHRLQAERRLYG
                     VVMDAFWMHVGDPAARDAAEERLGARLG"
     gene            5696..>5918
                     /locus_tag="VHN39_10750"
     CDS             5696..>5918
                     /locus_tag="VHN39_10750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816868.1"
                     /translation="MSTFFERAGPRWYTIPAHRPFAGDLARGLHEALAPLGPEALSQA
                     IVLTPTRRGARSLADAFVAAAEGRAVLPPQ"
BASE COUNT          873 a         2043 c         2099 g          903 t
ORIGIN      
        1 catcgccatt gcgccaggcg ttcaccaagg cgtgggcttc ggccatgaag gcgtagaagt
       61 ggatgcgccg cttcttctcc acctcggcgg tttcgaagaa caggtccatc agcgccgact
      121 tgccacgtcc gaccggcccc cagagataga ccccgcgctc ggcctccggc cttcggaaga
      181 ggcccttcag gccgcccgtg gccggcgccg cggccaagtc ggcctccagg cggatcaacg
      241 cccgcagacc gtcgccctgc gccggatcgg gccggatctc gcccgaggcg atgcgggcgt
      301 cgtaggcggc ttgcagcgcg gaggccatgc gccccgccta gcgggcggcg gggccgggcg
      361 caaggaaggg ggcgcaagga acgggcgtga gcgccaaggg ttgaaggtga accccacaag
      421 gagattcccc atggccgacg aggatcccat ctttgacgac accgacgaag ccgcctcggc
      481 gcaggtgacc cgcaggctgg agcagggcct gggcgtcggc cagcgcgaac tcagcgccca
      541 gcgcgacccg gagatcgatc cgccgttgct cgctgccaaa gcggaagacg actggggcga
      601 gccggccgcc gagggcgcga cctactcggc caaccacgcc acccgcggcg agaagaccgg
      661 cggccagaac ggccagggcg ccaagacgcg gacggccaac aaggacacgg tcagccggcg
      721 gtagctactt catcgtcggg atgacgaagg cgctatcttc ctgcgagccg tcgggccagc
      781 gggcggtgat ggtcttgacc ttggtgtaga agcgcacccc ctccatgccg tgctggttgg
      841 tgtcgccgaa ggccgagcgc ttccagccgc cgaaggagtg gtaggccacc ggcaccggga
      901 tcggcacatt gatgccgacc atgccgacat tgacctggct ggcgaactcg cgggcggcgc
      961 ggccgttccg ggtgaagatg gcgacgccgt tgccgtactg gtgctttgac ggcagcgcga
     1021 ccgcctcctc gaagctgtca gcgcggacga tctgcaggac cggcccgaaa atctcctcct
     1081 gataggtgcg catgtcgggc ttcacctggt cgaaaaggct cgggccgatg aagaagccct
     1141 tgtcatagcc ctgcagcgag aagccgcggc catcgaccac gagctcggcg ccttcgtcct
     1201 tgccgagctg gatgtagtca ctgatcttct ggcggtgcgc ggcggtgacc accgggccgt
     1261 actgggccgc ggcgtccgtc gatatgccga ccttcagggt ctcgatctcg gccagcatct
     1321 tctcgcggaa ggcctcggcg gttttggcgc ccaccggcac cacgacggga agcgccatgc
     1381 agcgctcgcc ggccgagccg aaggcggcgc cgctgatatc tttcacagcc tggtcgagat
     1441 cggcgtcggg catgacgatg ccgtggttct tggccccgcc catcgcctgg acccgcttgc
     1501 cggcggccgt gccgcgcgaa tagacgtagt gggcgatatc ggaggagccc acgaagctga
     1561 cggccttgat gtccggatgg tcgaggatgg cgtccaccgc gaccttgtcg ccgtggatca
     1621 cgttcaggac gcccttgggc gcgccggcct ccatcatcag ctcgcccagg cggacgggga
     1681 gcgacgggtc cttctccgac ggcttcagga tgaaggtgtt gccgacggcg atggagatgc
     1741 cgaacatcca catcggaatc atggccggga agttgaacgg ggtgatgccc gcgcagactc
     1801 ccaggggctg gcgcatggaa tagacgtcga tgccggggcc ggcgccctcg gtatattcgc
     1861 ccttcagcgc atgcgggatg ccgcaggcga attcgatgac ttcgaggcct cgctggatgt
     1921 cgcccttgct atcggcgatg accttgccgt gctcggacga cagcagttcg gccagctcgt
     1981 tcatgtcgcg ttcgatgagc cgcttgaagt cgaacatgac gcgggcgcgg cgctgcggat
     2041 tgaccagcga ccagacctgc tgggcgcgaa gcgccgaggc cacggcggcg tcgacctcac
     2101 cggtggtggc gagcgccacg cgggcctgca cctcgccggt gttggggttg aagatgtcgc
     2161 cgaagcggtc ggaggttccg gcgacagagg cgccgtcgat gaagtgggtg atgttgcgca
     2221 tgggcgggga tttagaccct cggagccctg acggaaaccc gcgtcatgat cgcttaagag
     2281 gtcggggtta gtttcgggct ggcagcccac gccggagtcc ccgttgcaag tttccgccat
     2341 tcccaccgga ccgacctact atcagccggt gacggctgtg ccaccggtca cgccggtggt
     2401 cgggcgagcc accggcgccg acgacgcggg cgcaaagctg cgcgccgccc aaccggccgg
     2461 gatcggcagc ctgctggata tggaagccta ggccgcagcg tcatacccgc cgcgtcgtcg
     2521 gcgcgggtgg ctcgcccggc ccagcgcatc ctccgtccca tgacggtcgc ttcgcccgcc
     2581 cagaccttga gccgcgcgca ggaccgcgac cacatcatcg atgtgctgat cgccgagcgg
     2641 gcgccgaagc tggcggcgag cgtcgcctgg ccggtgctgc ggccggtgct ctacagcttc
     2701 ctggactacg gcaaggcgcg gcggatggcc gacgcgattg cgctcctgtc cggccgcgcg
     2761 gcgctggagc acgtgtcgag cctgctgggc gtgagggtca cggcgatggg cctggagcac
     2821 atcccacgca agggccggct gatcgtcgtc tgcaaccatc cgaccggcat cgccgacggg
     2881 atcgcggtct atgacgcgct gaaggccatc cggccggacc tctgtttcta cgccaattcc
     2941 gacgcccatc gggtggctcc ccggttctcc gacgtgctga ttccggtgga gtgggtggag
     3001 gccaagcgca cccgcgaacg cacgcgcgag accctgctcg ccacccgcga ggtgctggag
     3061 gccgagcgct gtctggtgat ctttccgtcg ggccggctgt cgcgtcgcca gccggacggg
     3121 cggctctccg atcccccttg ggcgccctct gccatatcgc tggcgcgcag gtacgagacg
     3181 ccgatcgtgc cgctgcatgt ggccggcccc tggtcgcgga tgttccacct cttcaaccac
     3241 ttctcctcgg aactgcggga cgtgaccctg ttccacgagc ttctgaacaa gcagggccgg
     3301 gcgttcgcgc tcaccgtcgg cgcggccatc gcgccggagg ccctggaggg cgagcccacc
     3361 gaggcgatcg cccggctgaa ggccttcgtc gaaaccgagc tcgccgccga ccccgagcgg
     3421 gccttcgcat gatcctggcg gacgaggcgg ccaccgcgcg gctcggcgcg gccattgcgc
     3481 gggttctgcg gtccggcgag agcgtctgcc tgtcgggtcc gctgggggcc ggcaagtcga
     3541 ccctggcgcg ggccctgatc cgggcgctga ccacgcccac cgaggacgtg ccctcgccca
     3601 ccttcaccct ggtgcagttc tacgaaggcc cgcagctgaa gatcgcccac ttcgacctct
     3661 atcgcctgac caacccggac gaggcctatg agatcggtct cgacgaagcg ctggacgacg
     3721 gggcggcggt gatcgagtgg ccggagcgcc tgcaaggccg cctgccgtcg gatcgactcg
     3781 atatagagat cgcgcccatg gacagtaagg attggggcga cggccgcagc gcgcggctga
     3841 cgccgcatgg cgcgtgggaa gggcggcgag ttgacccctg agcgggaggc gcagaagggc
     3901 cggttcctga aggagcacgg ccttgcggcg gcgcggcgcg agccgctggc cggcgacgct
     3961 tccacgcgca gctatgtgcg gctctatccg gcaggcgcca agcccctgat cctgatggac
     4021 cagccgccgg tgctggagac ccccatcgcc ccgccgggcg cgacagacgc cgagcggatg
     4081 gcgctcggct acaacgccgc cgcccgcctg gccgcgggct ccgtcgcggc cttcgtcact
     4141 accgcggcct acctgcgcga ccatggcctg tcggcgccca ggatcgtggc cttcgatgtg
     4201 caggcgggcc tggcggtgct ggaggacctg ggcgatggct tgttcgccac cctgatcgcc
     4261 gatggccagg ccgagacgcc gctctatgag gccgctgtgg acgtccaggt gcagttgcac
     4321 gagcagcggc cgccggacat cctggaggcc gagggggtgg cctggccgct gctgacctac
     4381 gacaccctgg cgctgaaggt cgccaccgac accttcctgg agtggtggcc gcagttcgcg
     4441 gggctggagc cgttcagccc ggacgccatc gccgagtggg acgcgctttg ggcgccggtc
     4501 tgggtgcgtg gcgacgctgg ggcgagtgtc ttttgccacc gcgattacca cgcccagaac
     4561 ctgctctggc tgcccgagcg ggaggggacg gcgcgggtgg gcctgctcga cttccaggat
     4621 gcgctcaggg cgcatccgac ctgggacctc acccacctgc tgcaggacgc gcgccgggac
     4681 gtttcgcccg aactcgaagc gtccatgctg gatcgctacc tggccgcgcg gccgggcctg
     4741 gaccgggacc agttcctcgc cgactaccgg gcgctggccg cctccaacgc cgcgcgcatc
     4801 ctgggccggg tgttcgcgcg ccaggcgctc ctggggcggg cgcagtacaa ggccttcatg
     4861 ccgcgcacct ggcgctacct ggaacgcaat ctgaccgacc cggccctagc cgggctgaaa
     4921 acctggttcg acagatacgt tccggccgga gcccgcgcgt gaccgcccgt ctcgacaaga
     4981 gtagccccaa gaccgcgatg gtcctggccg cgggcctcgg cacccgcatg cgcccgctga
     5041 ccgacaacct gcccaaggcg ctgatcccgg tggccggccg caccctgctc gaccgggtcc
     5101 tggacaagct ggtggaggcc ggggtcgagc gggccgtggt caacgtccat catttcgccg
     5161 accaggtgga ggcgcatctg gcgtcgcgca cggaccttga aatcctgatc tccgacgagc
     5221 gggccggcct gctcgattcc ggcggcggca tccagcatgc tcgcgccctg ctgggcgagg
     5281 acccgatctt cctggccaac atcgactcgc tgtggctgga gggggcgacg ccggcgctgg
     5341 aggccctgaa gcgggcatgg gacccgggag ccatggacct cttgctgctg ctggtcgccc
     5401 gcggcaacgg catcggcttc gagggcccgc agggcttcct gatggacgac gcggggcgtc
     5461 tgacccactc gatctcgccc gacgtggtga cccccttcgc caacgtcggc ttcggcatcc
     5521 tgaaacccca ggtcctcgac ggccaaggcg gtggcgcgtt ttcgatctac ccgacctggc
     5581 atcggctgca ggctgagcgc cggctctacg gcgtggtgat ggacgccttc tggatgcacg
     5641 tgggcgaccc cgccgcgcgt gacgcggccg aagagcgcct tggggctcga ttggggtgag
     5701 cacgttcttc gagcgagcgg gaccgcgctg gtacacgatc ccggcgcacc ggccgttcgc
     5761 cggagacctg gccaggggcc tgcacgaggc gctcgcgccc ctggggccgg aggccttgtc
     5821 tcaggccatc gtcctgacgc cgacccggcg tggcgcgcgg tcgctggccg acgccttcgt
     5881 cgccgccgcg gagggccgag cggtcctgcc gccgcaga
//
LOCUS       DATAJL010000562         2036 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59634,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000562 DATAJL010000000
VERSION     DATAJL010000562.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59634"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VHN39_10755"
     CDS             <1..213
                     /locus_tag="VHN39_10755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816869.1"
                     /translation="PLGRSEAREPVRRVEEARLMPIDYGDSPEAFKRNIHTLSNDKKP
                     DGSPKFSRAQIVAIAFRARRSKRLKK"
     gene            1051..>2036
                     /locus_tag="VHN39_10760"
     CDS             1051..>2036
                     /locus_tag="VHN39_10760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816870.1"
                     /translation="MANGPAITAAINAAQNQADAAQNAANNYQPLSSPTIGYAPAAQA
                     GHATAGVSQGYGATGGVSQGYAAAAGQVGAYQAAPYTAPIQAGHATAGVATAAQIAST
                     ALAAKQQAIVAQQIQAALVAQQPAIQAQQVTAAQAGRTIVGPTALADQSQIAPVDLAG
                     NTTIDQGESEQARAAQTDLIGQLQGTIAGTSPSVAAIMLRQETERNIASQYALGAAAS
                     AQNSGLAQRTAMINAANLNQQAIGQQALLRAQEIATAQGLLGTTAGAERTSDINVATS
                     QADLSQQVILANAGFTNTQNMTQAQLDQAVKLANAGFKNTATTTQAQLDQATA"
BASE COUNT          409 a          747 c          606 g          274 t
ORIGIN      
        1 cctctgggtc ggagtgaagc gcgggagcca gttcgccgcg tcgaagaggc tcgtctgatg
       61 cccatcgatt acggtgattc cccagaggcg ttcaagcgca acatccacac gctttcgaac
      121 gacaagaagc ccgacggatc ccccaagttc agccgggcac agatcgtggc gatcgcgttc
      181 agagcgcggc gctccaagcg actcaagaag taggggcctg atcgggctgg ccacggtatg
      241 gccgtcaacc agccgccggt gaagtcgcta ccccgcaccg tcgcgtcccc gcagccgatt
      301 tttccttcag gtacctccgg cggaggaaca cctgcggcca cgtctatgcc gcagtctacg
      361 gccacatctg gggcctatcc tgtcgggtca aagtacaccc ccggaagctt tacctacacc
      421 tccggaaccg gaacggcata cgggctcacc aaaacagatg ctgggaacgg gaattcatat
      481 tacgaatacc cggacggaag tcggactctc gtcggacccg acggcactgt gctcggcaac
      541 caggcgccga gcacgccgac acctggagga acgccaagtt ccaccggagg gcccccccct
      601 cagttaccgc ctgggtggga cccaaccaag ggaacatcgg tcaactctga cgggaccatc
      661 aggaatgctg attatggaac caactcggat gggacagttg aggcaagcaa cgcgcagggc
      721 gtgcagcagg cgctggcagc tggctaaccg ctcaacaaga tccgggttcc cgtcgtttcc
      781 gatggcttca acggtgggcc tccgacgacg acatacacaa ccgccgacaa aggcggaatc
      841 ctcgatccga acgacggcaa gacccacacc ctgagttcca ccggagtcga aggcggaacg
      901 ccggcaccga agaacctcct cgatgcactt ggatccggcg tccccttcgt aagccctgtc
      961 ctcgccgccg gcacggggct tgttaccgac gtcgccaaca aggtcaaagg gctgcttccc
     1021 acaacttccg gtgggggcgc cgctccgacg gtggcgaatg ggccagccat caccgctgcg
     1081 atcaatgcgg cccagaacca ggcggacgcc gcgcagaacg ccgccaacaa ctaccagccc
     1141 ctctcgtcgc cgaccatcgg gtacgccccc gccgcgcagg ccggtcacgc cacggctggc
     1201 gtctcccagg gctatggcgc caccgggggc gtctcccagg gctatgccgc cgccgccggc
     1261 caggtcggcg cctatcaggc cgccccctac accgcgccga tccaggctgg tcacgcgacc
     1321 gcgggcgtcg ccacggcggc tcagatcgcc tcgacggctc tcgccgccaa gcagcaggcg
     1381 atcgtcgccc agcagatcca agcggccctc gtcgcccagc agcctgccat tcaggcccag
     1441 caggtcacgg cggcacaggc cgggcggacc atcgtcggcc ccaccgcgct cgccgaccag
     1501 tcccagatcg ccccggtgga tctggccggt aacacgacca tcgaccaggg cgagtccgag
     1561 caggcccgcg ccgcccagac cgacctgatt ggccaactcc agggcacgat cgcaggcacc
     1621 tctccatccg tcgccgccat catgctccgc caggagacgg agcggaacat cgcgagccag
     1681 tacgctctcg gcgccgctgc cagcgcacag aacagcgggc tcgcccagcg gacggcgatg
     1741 atcaatgccg cgaacctgaa tcagcaggcg atcggccagc aggcccttct tcgcgcccag
     1801 gaaatcgcga ccgcccaggg tctcctcggg acgactgccg gagccgagcg gacctcggac
     1861 atcaacgtgg ccacgtccca ggctgatctc tcccagcagg tcatcctcgc taacgccggg
     1921 ttcaccaaca cgcagaacat gacccaggcc cagctcgatc aggcggtcaa gctggcgaac
     1981 gctgggttca agaacaccgc gaccacgacc caggcccagc tcgaccaggc aaccgc
//
LOCUS       DATAJL010000563         3777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94325,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000563 DATAJL010000000
VERSION     DATAJL010000563.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3777
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94325"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VHN39_10765"
     CDS             <1..594
                     /locus_tag="VHN39_10765"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX2816871.1"
                     /translation="QDGFNVVFQPLKDGKASGSYMVFADGFAGPGKASGKAVFRPTGL
                     AVGPDGALYISDDVKGRIWRVTYQGPASAPVTGAPEPTYAPSAAQADAAPALPVPPGG
                     TADQVAKGMALFQGGTCGACHGKDASGGAIGPSLTAGTWLWGDGSLASLTDVIAKGVP
                     APKQYRSPMPPMGGAQLSPDDLAAISAYVWAVGHKPK"
     gene            621..1277
                     /locus_tag="VHN39_10770"
     CDS             621..1277
                     /locus_tag="VHN39_10770"
                     /inference="COORDINATES: protein motif:HMM:NF013340.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HEX2816872.1"
                     /translation="MKSQAIRLAAVAVVLSLAAAPALAQLSRATPGQPEARTAVDLMP
                     AKAKLTVTTPAFKDGGDIPFENTQYRTNTFPGLSWSKGPRATKTYVLIMQDNSLLLRG
                     APILHWTMFNIPASVSKLDAGMAPTGNPAGSSYGPNYMGGSKPYTGPRTPPGPKDNYH
                     FEIFAIDTTVPDEAKSSYDALTAAMKDHVLASGEVVGQGHADPDAPPPAPRPAPAPKP
                     "
     gene            1345..1716
                     /locus_tag="VHN39_10775"
     CDS             1345..1716
                     /locus_tag="VHN39_10775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816873.1"
                     /translation="MDLIVGQFKWIMLAGGLITLSMLSAAVAPRLTFRMMFGDAPDSP
                     LALLLARSWGVLIGLTGAMLVWGAFHPEARTLVLLVAGASKLTFIALVLSHPPYRARS
                     LAPLVVDGLLVALFAAYLLAA"
     gene            1797..3407
                     /locus_tag="VHN39_10780"
     CDS             1797..3407
                     /locus_tag="VHN39_10780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MDR family MFS transporter"
                     /protein_id="HEX2816874.1"
                     /translation="MSAVEFTDLEKRVTLWGVAIVFLLSALDQTIVATAMPRIISELN
                     GLALYSWVTTAYLLSSTVMVPIWGKLGDLFGRKPVLLAGILIFLAGSWLSGLSGEFGD
                     LPLIGGGMVQLIVFRAVQGIGGGALFTTAFAIIGDLYPPRERGKIGGMFGAVFGLSST
                     IGPLIGGYFTDHGTVTLAGHVIAGWRWVFYLNLPLSLLSLFMIIVKMPKMSHHAKGKI
                     DFIGAALIIATVVPLLLALTFGGHQYAWTSPTELGLFAGSAAGLLLYIFAERFASDPI
                     LPLELFKNRVFSTANLAGFLVSMSFMSTVAFLPLFQQLGQGVAATTSGLASLPLMFGI
                     FGSSILCGQLVSKTGKYRALMIGGLIVTFTGIWLLSRMHADTSRLDLAWRMLVLGVGL
                     GPGQSLFGLVIQNAMPIDKLGVVTSSSQFFRQIGSTMGVAIFGTFLTANLNSGLGKIM
                     PGVDVGKLRAMGGAAHAGAAPVLPTFIKVIISDAITGVFALGLYVVAVAFLVTLLIPN
                     VPMRDRSMMGAQASKKDDETVIPAEAHL"
     gene            3515..>3777
                     /locus_tag="VHN39_10785"
     CDS             3515..>3777
                     /locus_tag="VHN39_10785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816875.1"
                     /translation="MHATSRRVFRELVTGLGALAAAVVIQAAIVWVTIDDLQALDAAD
                     DEARTELLHEAVMVEAMQAQEAGIDGYVISHDPGYLKTYEAGHA"
BASE COUNT          573 a         1303 c         1237 g          664 t
ORIGIN      
        1 caggacggat tcaacgtggt gttccagccc ctgaaggatg gcaaggcgag cgggagctat
       61 atggtcttcg ccgacggctt cgcgggcccc ggcaaggcct ctggcaaggc ggtgttccgc
      121 cctaccggcc tggcggtcgg ccccgatggc gcgctctata tttccgacga cgtgaagggc
      181 cgcatctggc gcgtcaccta ccagggtccg gcgagcgccc cggtcaccgg cgctccggag
      241 ccgacctacg ccccgtccgc ggcgcaagcc gacgcagcgc ctgccctgcc tgtgccgccc
      301 ggcggcacgg ccgatcaggt cgccaagggc atggcgctct tccagggcgg gacctgcggc
      361 gcctgccacg gcaaggacgc ttccggcggc gcgatcggcc ccagcctcac cgcagggacc
      421 tggctctggg gcgacgggag cctcgcctcg ctcaccgacg tgatcgcgaa gggcgtgccc
      481 gcgcccaagc agtaccgcag cccgatgccg ccgatgggcg gggcgcagct gtcgcctgac
      541 gatctcgccg ctatctccgc ctacgtctgg gcggtcggcc acaagccgaa ataacaagaa
      601 gaagcagagg gaagaaactg atgaaaagcc aagcgatccg cttggcggcc gtcgccgtcg
      661 tgctgagcct cgccgccgct cccgccctgg cgcagctttc ccgcgctacg cccggccagc
      721 ccgaggcgcg cacggccgtg gacctaatgc cggccaaggc caagctgacg gtcaccacgc
      781 cggccttcaa ggacggcggc gacattccct tcgagaacac ccagtaccgc accaacactt
      841 tcccgggcct gagctggagc aaggggccac gggcgaccaa gacctatgtg ctgatcatgc
      901 aggacaactc gcttctgctg cgcggcgcgc cgatcctgca ctggacgatg ttcaacatcc
      961 cggccagcgt cagcaagctg gacgccggca tggcgcccac cggaaatccg gctggctcgt
     1021 cctacggccc gaactatatg ggcgggtcca agccctacac cggcccgcgc acgccccctg
     1081 gaccaaagga caactaccat ttcgagatct tcgccatcga caccaccgtg ccggacgagg
     1141 cgaagtccag ctacgacgcg ctgaccgccg ccatgaagga ccatgtcctg gccagtggcg
     1201 aggtggtggg ccagggccac gccgatcccg acgcaccgcc ccccgcgccg cgcccggccc
     1261 ccgcgcctaa gccgtagccg gcgacgaggg ttcacggctg catccgtctg ctaagctcaa
     1321 cggtagagct tgggggaggc ggccatggat ctgatcgtcg gacagttcaa atggatcatg
     1381 ctcgcgggcg ggctgatcac gctcagcatg ctttcggcgg ctgtggcgcc gcggctcacg
     1441 ttccggatga tgttcggaga cgcgccggat agtccgctgg ccttgctgct cgcccgaagt
     1501 tggggtgtcc tgatcgggct caccggcgcc atgctggtct ggggcgcctt ccatcccgag
     1561 gctcggactc tggtcctgct ggtggccggc gccagcaagc tcaccttcat cgcgctcgtg
     1621 ctcagccatc cgccctatcg cgccaggtcc ctcgcgccgc tcgtggtgga cggcctgttg
     1681 gtcgccctct tcgctgccta tctactggcg gcctgactcc tcgcggcgat acgcgcgctc
     1741 gccccagggc cattgcctgg gttatggaca gggcttgagt ctgagggggc ccataagtga
     1801 gcgcagttga attcactgat ctcgagaagc gcgtaacgct ctggggcgtc gccatcgtct
     1861 tcctgttgtc ggcgctcgat cagacgatcg tggccacagc catgccgcgg atcatctccg
     1921 agctgaacgg cctggcgctc tatagctggg tgaccacggc ttatttgctg tcgtccacgg
     1981 tgatggtgcc gatctggggc aagctcggcg acctcttcgg gcgcaagccc gtgctgctgg
     2041 ccggcatcct gatcttcctc gcgggctcct ggctatcggg gctctcaggg gagttcggcg
     2101 acctgccgct gatcggcggc ggcatggtgc agctgatcgt cttccgcgcg gtccagggga
     2161 tcggcggcgg ggcccttttc accaccgcct tcgcgatcat cggcgacctc tacccgccgc
     2221 gcgagcgggg caagatcggc ggcatgttcg gggcggtgtt cgggctttcc agcaccatcg
     2281 gcccgctgat tggcggctat ttcaccgacc acggcacggt gaccctggcc ggccatgtga
     2341 tcgccggctg gcggtgggtg ttctacctga acctgccgct ctcgctcctc tcgctcttca
     2401 tgatcatcgt gaagatgccg aagatgtccc accacgcgaa gggcaagatc gacttcatcg
     2461 gcgcggccct gatcatcgcc accgttgtgc cgcttctgtt ggcgctcacc tttggcggcc
     2521 accagtacgc ctggacctcg cccaccgagc tcggcctctt cgcgggctcg gcggcgggcc
     2581 tgttgctcta catcttcgcc gagcggttcg cgtcggaccc gattctgccg ctggagctgt
     2641 tcaagaaccg ggtcttctcg accgccaacc tggcaggctt cctggtctcc atgtcgttca
     2701 tgagcacggt cgccttcctg ccgctcttcc agcaacttgg gcagggcgtg gcggccacca
     2761 ccagcgggct cgccagcctg ccgctgatgt tcggcatctt cggctcgtcc atcctctgcg
     2821 gccagctggt cagcaagacc ggcaaatacc gggctctgat gattggcggc ctgatcgtca
     2881 ccttcaccgg gatctggctg ctcagccgga tgcacgccga cacctcgcgc ctcgacctcg
     2941 cctggcggat gctggtgctg ggggttgggc tcggccccgg ccagagcctc ttcgggctgg
     3001 tcatccagaa cgccatgccc atcgacaagc tgggcgtggt gaccagctcc agccagttct
     3061 tccgccagat cggctcgacc atgggggtgg cgatcttcgg caccttcctg accgcgaacc
     3121 tcaattcagg gctcggcaag atcatgcccg gagtcgatgt gggtaagctt cgagccatgg
     3181 gcggggcggc ccacgccggc gcggccccgg tgctgccgac cttcatcaag gtgatcatct
     3241 ccgacgcgat caccggggtc tttgcgctgg ggctctatgt ggtggcggtg gccttcctgg
     3301 tgacgctcct gatccccaac gtgcccatgc gcgaccgcag catgatgggc gcccaggcgt
     3361 cgaagaagga cgacgagacc gtcatccccg ccgaggcgca cctctagggc ttgccatggc
     3421 ctaggtagtt gtcctgaggc ggacgacccc tcaatggacg cctggtgtta agcctgtgct
     3481 gatagtttcg ggccctacgc gaaaagggcg gggcatgcac gcgactagcc gcagggtctt
     3541 tcgggagctg gtgacggggc tgggagccct ggccgcagca gtcgtcatcc aggcggcgat
     3601 cgtgtgggtc accattgacg accttcaggc cctggacgcc gcggacgacg aggcgcggac
     3661 ggaactgctg cacgaggcgg tgatggtcga ggcgatgcag gcgcaggagg ccggaatcga
     3721 cggctatgtc atcagccacg acccggggta cctgaagacc tatgaggccg gccacgc
//
LOCUS       DATAJL010000564         3028 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9720,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000564 DATAJL010000000
VERSION     DATAJL010000564.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9720"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VHN39_10790"
     CDS             <1..212
                     /locus_tag="VHN39_10790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012289024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HEX2816876.1"
                     /translation="WRDDGLYDLVVVLGHNDDPPVAPMGSCIFLHLARPGYLPTEGCV
                     AVTRADLEDLLAAAQPGDAVQITGG"
     gene            complement(199..1032)
                     /locus_tag="VHN39_10795"
     CDS             complement(199..1032)
                     /locus_tag="VHN39_10795"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816877.1"
                     /translation="MAGLSDIGVPAGSPEIEVDGVRLAVAREGSGTPVVCLHAIGHGG
                     RDFEAFIEATKGRFEIIRIDWPGQGRSGEDSQAASVARYADLLAGVLAKLGVTDPILI
                     GNSIGGAAAILHASRARVRGLVLCDSGGLVAVDGGVRTIIGVFVKFFRAGMRRAWWYR
                     PVFAAYYRLVLPSPAARGQRGRIIDSCHELAGVLVEAWESFGRPEADIRGLAASLTIP
                     VWFAWARSDRVIPLSVCRPAIDAMRHATVTEFAGGHSAVLEQPEAFAAGFLEFVALNR
                     L"
     gene            1086..1646
                     /locus_tag="VHN39_10800"
     CDS             1086..1646
                     /locus_tag="VHN39_10800"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2816878.1"
                     /translation="MSRRLEVPAEETTRAKLCAAAMAEFNDHGFAGTDTNRIARRAGF
                     APQTFYRWYKDKTEVFVAAYRAWEEAEMDTVQVLLARDAPVEALVEAAIQHHRGHLMF
                     RRSLRQLSLESPVVRAARAESRLRQIAQIRTWTGQAAETGQMAVWVLQMERLSDAVAE
                     SELADMGLSESEARAELGRIVSALRG"
     gene            complement(1643..2008)
                     /locus_tag="VHN39_10805"
     CDS             complement(1643..2008)
                     /locus_tag="VHN39_10805"
                     /inference="COORDINATES: protein motif:HMM:NF018942.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HEX2816879.1"
                     /translation="MAWTAINFVGRVLIAFLFIPAGLLKLTGPKPFLDHMAEHRVPGV
                     LLPLVALFEIGTGVLILSGWQARWASLALAGFCVMTAFVFHLDWSIRAERTQFIKDIA
                     IAGGMLVMASYSGRVWPFG"
     gene            2084..2425
                     /locus_tag="VHN39_10810"
     CDS             2084..2425
                     /locus_tag="VHN39_10810"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2816880.1"
                     /translation="MDRPYQVTSVTVLASGPGVLVREFVFGPGEATPWHRHSAVEDRG
                     YVLSGDLVVETRDPPARVELAAGDSHVVEAGTVHRVANLGAGEARLLLIQHGGRYDFI
                     AEGAALQSREA"
     gene            2428..3000
                     /locus_tag="VHN39_10815"
     CDS             2428..3000
                     /locus_tag="VHN39_10815"
                     /inference="COORDINATES: protein motif:HMM:NF013933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEX2816881.1"
                     /translation="MHLSTWLAFALACAAMGLIPGPGVTSIVGYALSSGRRTALASVA
                     GMALGNILAMSVSLAGAGALLAASALAFAVLKWAGALYLIGLGVLAIARSRRGLGVEA
                     AALAPISPRTAFLSNVAVGTFHPKTIVFFVAFAPQFIRPDVNYALQAGILIATFGVVV
                     GATDTLYALAASTPRPRRLRAIASTPRPIR"
BASE COUNT          483 a         1067 c         1039 g          439 t
ORIGIN      
        1 tgtggcgcga tgacgggctc tacgacctgg tggtggtgct gggccacaac gacgacccac
       61 ccgtggcgcc catgggctcg tgcatcttcc tgcacctggc gcggccgggg tatctgccca
      121 ccgagggctg cgtggcggtg acccgggcgg acctggaaga cctgctcgcc gcggcccagc
      181 cgggcgatgc ggtgcagatc acaggcggtt aagcgccacg aactccagga agccggccgc
      241 gaaggcctcg ggctgctcga gaaccgccga atggccgccg gcgaactcgg tgaccgttgc
      301 gtgccgcatg gcgtcgatgg ctggccggca gacgctcagc ggaatgaccc ggtcggacct
      361 cgcccaggcg aaccacaccg ggatcgtcag gctcgcggcc aagccgcgga tgtcggcctc
      421 ggggcggccg aagctctccc acgcctcgac caggactccg gccagctcgt ggcagctgtc
      481 gatgatccgc ccgcgctggc ccctggcggc cggcgagggg agcacgaggc ggtagtaggc
      541 ggcgaagacg ggccggtacc accaggcgcg ccgcatcccg gccctgaaga acttgacgaa
      601 gacgccgata atcgtcctga ccccgccgtc gaccgccacc aggccgcccg agtcgcagag
      661 caccagcccc cgcacccgag cgcgcgaggc atggaggatc gccgcggccc cgccgatgga
      721 gttgccgatc aggatcggat ccgtcacgcc cagcttcgcc aagacacccg ccagcaggtc
      781 ggcgtagcgc gcgacgctgg cggcttgcga atcctcgccc gaccgcccct gccccggcca
      841 gtcgatacgg atgatctcga aacggccctt cgtcgcctcg atgaaggcct cgaagtcgcg
      901 gccgccgtgg ccgatggcat gcaggcagac gaccggggtc ccactgccct cgcgggcgac
      961 ggccagccgt acgccatcca cttcgatctc aggagagccc gctggcacgc caatgtcgct
     1021 caggcccgcc atcggtcacc tccgggtgat ttttatatca cttgtgatgc tggtatcact
     1081 ttcgaatgtc aagacgactc gaggtcccgg ccgaggagac cacccgcgcc aaactctgcg
     1141 cggcggccat ggccgagttc aacgaccacg gcttcgccgg caccgacacc aaccggatcg
     1201 cccggcgggc cggcttcgcg ccccagacct tctaccgctg gtacaaagac aagaccgagg
     1261 tcttcgtcgc cgcctaccgc gcctgggaag aggcggagat ggacacggtt caggttctgc
     1321 tcgcgcggga cgcgcccgtc gaggccctgg tcgaggcggc aatccagcac caccggggcc
     1381 atctgatgtt ccgccgcagc ctgcgccaac tgtcgctgga aagtccggtc gtccgggccg
     1441 cccgcgccga gagccgcctg cgccagatcg cacagatccg cacctggacc ggacaggcgg
     1501 cggaaaccgg ccagatggcg gtctgggtgt tgcagatgga gcgcctatcg gacgcggtgg
     1561 ccgagagcga actggcggac atggggctca gcgaaagcga ggctcgcgcg gagcttggcc
     1621 ggattgtttc ggcgctgcgc ggctagccga atggccagac gcggccgctg taggaggcca
     1681 tcaccagcat gccgcccgca atggcgatgt ccttgatgaa ctgggtgcgc tcggcgcgga
     1741 tggaccagtc gaggtggaag acaaacgcgg tcatgacaca gaagccggcc agggcgagag
     1801 acgcccagcg cgcctgccag ccgctgagaa tgagcactcc ggttccgatc tcaaacagcg
     1861 ccaccagcgg cagcagcacg ccaggcacgc gatgctcggc catgtgatcc aggaacggct
     1921 tgggaccggt gagcttgagg agccccgccg ggatgaacag gaaggcgata aggacccgcc
     1981 ccacgaaatt gattgccgtc caggccatgg gtgacgcctc ctgaaaacaa cgtgatatat
     2041 ctatcacttt cggcaggccg tcaaggctat cagggtgagc gacatggatc ggccctatca
     2101 ggtcacttcg gtcacggtgc tggcttccgg gcccggcgtg ctggtgcgcg agttcgtctt
     2161 cggccccggc gaggccacgc cctggcaccg tcacagcgcc gtggaggacc gtggctacgt
     2221 cctgtcgggg gaccttgtgg tcgagacccg cgatccgccg gcgcgcgtcg agctcgcggc
     2281 cggcgacagc catgtggtcg aggccgggac cgttcaccgg gtcgccaacc tcggcgcggg
     2341 cgaagcccgc ctgttgctca tccagcacgg cggccgctac gacttcatcg ccgagggcgc
     2401 cgccctccag agcagggagg cctgaccatg cacctgtcga cctggctggc gtttgcgctc
     2461 gcctgcgccg ccatgggcct gattccgggc cccggcgtga ccagcatcgt gggctatgcg
     2521 ctcagctccg gccggcgcac ggcgctggcc tcggtggcgg gcatggcgct cgggaatatc
     2581 ctggccatga gcgtgtcgct ggccggggcc ggggccctgc tcgccgcctc ggccctggcg
     2641 tttgccgtgc tgaagtgggc cggcgcgctc tatctgatcg gcctgggggt gctggcgatc
     2701 gcccgcagcc gccggggcct gggcgtcgag gccgcggccc tggcgccgat cagcccgcgc
     2761 acggccttcc tcagcaacgt cgccgtgggg accttccacc ccaagactat cgtcttcttc
     2821 gtagccttcg cgccgcagtt cattcgaccg gacgtgaatt atgccctgca ggccgggatc
     2881 ctgatcgcca ccttcggcgt ggtcgtgggg gcgacggaca ccctctacgc gctcgcggcc
     2941 tcgacgccca ggccccggcg gctgcgggcg atcgccagca cccccaggcc gatcagatag
     3001 agcgcgccgg cccacttcag cacggcaa
//
LOCUS       DATAJL010000565         1551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_119967,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000565 DATAJL010000000
VERSION     DATAJL010000565.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119967"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VHN39_10820"
     CDS             <1..192
                     /locus_tag="VHN39_10820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816882.1"
                     /translation="KADGAAGADDPGAKVWQALHRQLAARFLHGDQRIVKSSHLMMND
                     RPEVVAAAAVELVQQARAH"
     gene            complement(213..>1551)
                     /locus_tag="VHN39_10825"
     CDS             complement(213..>1551)
                     /locus_tag="VHN39_10825"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MBOAT family O-acyltransferase"
                     /protein_id="HEX2816883.1"
                     /translation="FKDARWRSAVMLVANLGFLASFAHGPLALAPFAGFLAFGYAALW
                     LARRRSRFALPVLIVATLAIFFYLKRYSFIPGAILLPPIYVTVGLSYVFFRVLHLIID
                     TGQGALEERVGPVAYINYTLNFTALVAGPIQTFQDWRDGHEGRPDLAALAWAGERIVV
                     GCFKVMVASSVLDAIQAQARVQLLSGMGPLDPALQGAAVIALYPIYLYFNFSGYVDVV
                     VGAARLMGLRLPENFDRPFVSASFIEFWSRWHITLSTWLKTYVYTPLMMSLMRRFPAP
                     GVSSALTVMAFFVTFFLVGAWHGQTSEFLFFGVLQGGGVALNKLYQLQMTARLGRSGY
                     RALSENAVYVALARGLTFTWFAFSLLWFWGDWRTLDRFATTLGAGDVVLALAVIWVVA
                     TIVLEVFARLTDALSPRYGLAPRALAAGAMIYLTAIYVLILNAAPPPVVYKAF"
BASE COUNT          328 a          492 c          534 g          197 t
ORIGIN      
        1 aaggcggatg gggcggcggg cgcggatgat cctggagcca aggtctggca ggccctgcac
       61 cgccagctgg ccgcgcgttt cctgcacggc gaccagcgca tcgtgaagtc ctcgcacctg
      121 atgatgaacg accggcccga ggtcgttgcg gcggctgcgg tcgaactcgt ccaacaggcg
      181 agggcccact aggcgcccga cctggcggcg cgtcagaacg ccttgtagac caccggcggc
      241 ggggccgcgt tcaggatcag cacatagatc gccgtcaggt agatcatcgc gccggcggcc
      301 aacgccctgg gcgcaagccc gtaccttgga gacagggcat ccgtcagccg cgcgaagacc
      361 tcgagcacga tcgtcgccac gacccagatg accgccagag cgagcacgac gtctccggcg
      421 cccagcgtgg tggcgaagcg gtccagggtg cgccagtcgc cccagaacca caggaggctg
      481 aacgcgaacc aggtgaaggt cagcccgcgc gccaaggcga catagacggc gttctcgctc
      541 agcgctcgat agcctgaccg tcccagcctt gcggtcatct gaagctgata gagcttgttc
      601 agggccacgc cgccgccctg gagcacgccg aagaagagga actccgaggt ctggccgtgc
      661 caggcgccga ccaggaagaa ggtcacgaag aaagccatca ccgtcagcgc cgaactcacg
      721 ccgggcgctg ggaagcgccg catgaggctc atcatcagcg gcgtgtagac ataggtcttg
      781 agccaggtgc tgagcgtgat gtgccagcgg ctccagaatt cgatgaagct ggccgagacg
      841 aaggggcggt cgaaattctc cggcaagcgc agacccatga gccgcgcggc gccgacgacg
      901 acgtccacgt agcctgagaa gttgaaatag aggtagatcg gatagagggc gatgacagca
      961 gccccctgga gggctggatc caaggggccc attccagaca ggagttgcac gcgggcctgc
     1021 gcctggatgg cgtcgagcac cgaagaggcg accatcacct tgaagcagcc gaccacgatg
     1081 cgttcgccgg cccaggcgag ggccgcgagg tcaggccgcc cctcatgccc atcgcgccaa
     1141 tcctggaagg tctggatcgg gccggcgacc agggccgtga agttcagggt gtagttgatg
     1201 tatgcgaccg gacctacgcg ctcttccagg gcgccctgac cggtgtcgat gatcaggtgc
     1261 aacacccgga agaagacgta ggagagaccg accgtcacat agatgggcgg cagcaggatc
     1321 gcgccgggga tgaaactgta gcgcttcaga tagaagaaga tcgccagggt ggcgacgatc
     1381 aggacgggca gggcgaaacg cgaccgccgc cgcgccagcc acagagccgc atagccgaac
     1441 gccaggaagc ctgcgaaggg cgccaaggcc agcggaccat gggcgaagct cgccaggaac
     1501 ccgaggttcg ctacgagcat caccgccgag cgccagcgcg catccttgaa c
//
LOCUS       DATAJL010000566         1617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9754,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000566 DATAJL010000000
VERSION     DATAJL010000566.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9754"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            276..351
                     /locus_tag="VHN39_10830"
     tRNA            276..351
                     /locus_tag="VHN39_10830"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:309..311,aa:Asn,seq:gtt)
     gene            complement(392..1156)
                     /locus_tag="VHN39_10835"
     CDS             complement(392..1156)
                     /locus_tag="VHN39_10835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816884.1"
                     /translation="MASRAKGLGLSTFAAIGMAAGLCGLGALSLIYQDYTLQWEPVPA
                     SWPAHAALGAASGLILLISGIMMAMRRTRGLGAAIASTFIALWVLLQIAKVLPDPANV
                     GSWNAVAECTAMAIGAALLALEQGRAASGLGIPGRVATGFFGVTLLIFGTAHFVYAKF
                     TASMIPAWLPMRLQLAYFTGAIHALMGVALMLGVQRRWSATIEALMMTSFVLLVHLPR
                     VAAKPGDRTELTLLFIAVTLSSAAWIVAASRTVARR"
     gene            complement(1251..>1617)
                     /locus_tag="VHN39_10840"
     CDS             complement(1251..>1617)
                     /locus_tag="VHN39_10840"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008198 - ferrous iron binding [Evidence
                     IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="2OG-Fe(II) oxygenase"
                     /protein_id="HEX2816885.1"
                     /translation="YLICRYGDEDQGFFSRHRDDITAGTAHRKFAVSLNLNDGYEGGD
                     LRFPEFGPRTYRPPVGGATVFACGLLHEATPVTKGERFVFVPFLYDEDGARIRRQNMS
                     KVAVGPRDNRQTRRAKRPR"
BASE COUNT          274 a          599 c          509 g          235 t
ORIGIN      
        1 cctttcctgt tcctggcccc cgccgcctga acgcgtagcc gatcgcgcgc gcggctccaa
       61 atccggcctc gacgacgccg cccggtccgt taaccccgcc ttaaccacgt gagtccaacc
      121 tcggagcgtc ttccttgaag acaccccacc aacaccgact ttcaatagcc cggcgctcgc
      181 gccgggctct tttttcgagt gcgtccattc ggagcggccc cccggcttgc gcccggacgg
      241 cggccaacgt atacccccgg ccctcgacgg cctgatcccg gatagctcag ctggtagagc
      301 agtcggctgt taaccgactt gtcgcaggtt cgagtcctgc tccgggagcc atcgtccttc
      361 cagccgcccc aacctagcgc cgcgccccag tctagcgacg cgccaccgtg cgcgacgcag
      421 ccacgatcca ggccgccgaa ctcagggtca cggcgatgaa cagcaacgtc agctccgtcc
      481 ggtcgcccgg cttggccgcc actcgcggca aatgcaccag caggacgaag gaggtcatca
      541 tcagcgcttc gatggtcgcc gaccagcggc gctgcacccc gagcatcaat gcgaccccca
      601 tcagagcgtg gatcgcgccg gtgaagtagg cgagctgaag ccgcatcggc agccaggccg
      661 ggatcatcga ggcggtgaac ttggcgtaga cgaagtgggc ggtcccgaag atcagcagcg
      721 tcacgccgaa gaaccccgtc gcgacacggc cgggaatgcc caaaccgctg gccgcccgcc
      781 cctgctcaag cgccaggagc gccgcgccga tggccatggc cgtgcactcg gcgaccgcat
      841 tccaggagcc gacattggcc gggtcgggca ggaccttggc gatctgcagc agcacccaca
      901 gggcgatgaa cgtcgaggcg atcgccgcgc cgaggccgcg cgtgcggcgc atggccatca
      961 tgatcccgct aatcagcaga atcaggcccg aggccgcccc cagggccgcg tgcgcgggcc
     1021 aggacgccgg gaccggctcc cactgcaggg tgtagtcctg atagatcagc gacagcgcgc
     1081 ccaggccgca gaggcccgcc gccatgccga tcgccgcaaa cgtggataga cccagtccct
     1141 tcgcccgtga agccacgcgt ctctcccgtc ccagccgttt cgctgagcct cgcccgatcc
     1201 acctgcgaac gatcgttaat tccccgtcat gtccgcgtgc ccgcggcggc ctagcgcggg
     1261 cgtttggctc gccgcgtctg gcggttgtca cgcgggccca cggcgacctt gctcatattc
     1321 tgccgccgga tccgcgcgcc atcctcgtca tagaggaagg gcacgaagac gaaccgctca
     1381 cccttcgtca ccggcgtcgc ctcgtgcagc aggccgcacg cgaacaccgt cgccccgccg
     1441 acgggcgggc gataggtgcg cggaccgaac tccgggaacc gcaggtcccc gccctcgtag
     1501 ccatcgttga gattgagcga gacagcgaac ttgcggtgcg cggtgccggc ggtgatgtcg
     1561 tcgcggtggc gggagaagaa gccctggtcc tcgtcgccat agcggcagat caggtag
//
LOCUS       DATAJL010000567         3082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_48422,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000567 DATAJL010000000
VERSION     DATAJL010000567.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48422"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1563)
                     /locus_tag="VHN39_10845"
     CDS             complement(<1..1563)
                     /locus_tag="VHN39_10845"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEX2816886.1"
                     /translation="MSKLTQFAQMAAMASALALTLAAGTVTAADKPAAKPAAAAPAAK
                     WGGLPPGASEEWATLRDGVKLAGNVYKPTGPGPWPVVISRTPYLKDGRADPDKDPKGV
                     KTREALAKQAKRYTDAGFVFVLQDVRGKGRSQGFDSVFQNDIEDGYDSVEWAATQPWS
                     TGNVGITGGSALGITSNAAAMAAPPHLKAAYVVVAPFDSPLTSYPGGVLKEKDTLGWL
                     KGQGVSDAVLDQTRVRVVDDVFWARVAMSVGARYIHIPVYNVGGWYDIFNAGNVESFE
                     YLQNEGAKGARGNQKLLMGPFGHGPLSGNLDYPGFDRGSLAGDQELRWFDYWLKGADN
                     GIMAEPPVSYFMMAGAEKGAISPKNRMLTSANWPPANREVRYYLTPEKSLSIKPPAGE
                     GAKISYRFDPANPVATVGGANLTFERGPMDQRAIPARPDYLRFTTPALDKDLTIAGPV
                     KVELYGATDGLDTDFMAKLVDIYPDGYEALVLDAPIRARCREGRDPDQVRMMTPGIPA
                     HMTIDLWDTALTF"
     gene            complement(1629..2492)
                     /locus_tag="VHN39_10850"
     CDS             complement(1629..2492)
                     /locus_tag="VHN39_10850"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2816887.1"
                     /translation="MAIRERPFRFTGADGADIAGFRWTDDTVTPHAVLQVAHGMGEHA
                     RRYQAPLAPLIAAGWAVYADDHRGHGLTAPSPEHLGDFGENGAELVVEDLHRLTSLAR
                     AEHPDLPLILLGHSLGSFFAQAFVFDHSHAIDGLVLSGTAAFGDRTGPVRRLDEVTLD
                     GEPRRTAYDWLSRDPGEVDAYIADPLCGFSRKETSAGSFARVAARLKDPAEIARIRKD
                     LPIYVFVGDKDPINQDLALLKPLVDRYRAAGLTDLEVKVYPGGRHEMLNETNRAEVVA
                     DLTAWLERVAG"
     gene            2585..>3082
                     /locus_tag="VHN39_10855"
     CDS             2585..>3082
                     /locus_tag="VHN39_10855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HEX2816888.1"
                     /translation="MTREDAQGRDVADPLARFRDAFDLPSGVIYLDGNSLGPPPLAAH
                     ERLERVSRREWGEGLVRSWNAAAWIEAPLRVGGKIARLIGAKANEVAVADSTSVNIFK
                     LAAGALSLRPGRTTILSETGSFPTDLYALQGLVALLGDRARLKTVAATDLVAAIDEDT
                     ACVVLT"
BASE COUNT          446 a         1062 c         1072 g          502 t
ORIGIN      
        1 gaaggtcagg gctgtgtccc aaagatcgat cgtcatgtgc gccggaatac ccggggtcat
       61 catcctcacc tgatccggat cgcggccctc ccgacaccgg gcgcggattg gcgcatcgag
      121 caccagggcc tcgtagccgt ccggatagat gtccaccagc ttggccatga agtcggtgtc
      181 gaggccgtcg gtggcgccgt aaagctcgac cttcaccggc ccggcgatcg tcaggtcctt
      241 gtccagcgca ggcgtcgtga agcggaggta gtcgggccgc gcaggaatcg cgcgttgatc
      301 catcgggccg cgctcgaagg tcaggttcgc cccacccacg gtcgcgaccg ggttggccgg
      361 atcgaagcgg tagctgatct tcgccccctc gccggccggt ggcttgatgc tgaggctctt
      421 ttccggggtc agatagtagc ggacctcgcg gttggccggc ggccagttgg cggaggtcag
      481 catgcggttc ttcggcgaaa tcgcgccctt ctcggcgccg gccatcatga agtagctcac
      541 cggcggctcg gccatgatcc cgttgtcagc gcccttcagc cagtagtcga accagcgcag
      601 ttcctggtcg ccggccagac tgccgcgatc gaagccgggg tagtcgagat ttccgctcag
      661 cgggccgtgg ccgaacgggc ccatcagcag cttctggttg ccgcgcgcgc ccttggcccc
      721 ttcgttctgc aggtattcga agctctcgac gttgccggcg ttgaagatgt cgtaccagcc
      781 gccgacgttg tagaccggga tgtggatgta ccgggcccca acgctcatgg cgacgcgggc
      841 ccagaacacg tcgtccacga cccggacgcg ggtctggtcg agcacggcgt cggagacccc
      901 ctgccccttc agccagccga gcgtgtcctt ttccttgagc acgccgcccg ggtagctggt
      961 cagcggggag tcaaagggcg ccacgactac atatgcggcc ttcaggtgcg gcggcgcggc
     1021 catggccgcg gcgttggagg taatgcccag cgccgatccg ccggtgatcc cgacattgcc
     1081 ggtgctccag ggctgggtcg cggcccactc gacgctgtcg taaccgtcct cgatgtcgtt
     1141 ctgaaagacc gagtcgaagc cttgggagcg gcccttgccg cgcacgtcct gcaacacgaa
     1201 gacgaagccc gcgtcggtgt agcgcttggc ctgtttggcg agcgcctcgc gggttttgac
     1261 ccccttggga tccttgtccg ggtcggcccg gccgtccttc aaatagggcg tacggctgat
     1321 caccaccggc caggggccgg gcccggtggg cttgtagaca ttgccggcga gcttcacccc
     1381 atcgcgcagg gtggcccatt cttccgacgc gccgggcggc aggccacccc acttggcggc
     1441 cggggccgcg gcggcaggct tggcggccgg cttgtcggcg gcggtgaccg tccccgcggc
     1501 cagcgtcagc gccagagccg aggccatggc cgccatctgg gcgaattggg tcagcttgct
     1561 catgatgtcg tttccccggc gggtctgcgc ccgtacccga tcatctaagc acaggccgga
     1621 ccgggacgtc agcccgccac gcgctccagc caggcggtca ggtcggccac cacctcggcg
     1681 cggttggtct cgttgagcat ctcgtggcgg ccgccgggat agaccttcac ctccagatcg
     1741 gtgagccccg cggcccggta gcggtcgacc aggggcttca gcagggccag gtcctgattg
     1801 atcgggtcct tgtcgccgac gaagacatag atcggcaggt ccttgcggat ccgtgcgatc
     1861 tcggccgggt ccttgagccg cgccgcgacc cgggcgaagg agccggcgct ggtctccttg
     1921 cgggagaagc cgcagagcgg gtcggcgatg taggcgtcca cctcgccggg atcgcgggag
     1981 agccagtcgt aggcggtcct gcgcggctcg ccgtcgaggg tgacctcgtc cagccgtcgg
     2041 accgggccgg tacggtcgcc gaaggccgcc gtgccggaga gcaccaggcc gtcgatggcg
     2101 tgggagtggt caaagacaaa ggcctgggcg aagaacgacc ccaggctgtg gcccagcagg
     2161 atcagcggca gatccggatg ctcagctcgg gccagcgaag tcaggcggtg cagatcctcg
     2221 accaccagct ccgcgccgtt ctcgccgaaa tcgcccaggt gctcggggct cggcgcggtc
     2281 aggccgtggc cgcgatggtc atcggcatag accgcccagc cggcggcgat cagcggggcg
     2341 agcggggcct gatagcggcg cgcatgctcg cccatgccgt gcgccacctg cagcaccgcg
     2401 tgcggcgtca ccgtgtcgtc ggtccagcgg aagcccgcga tgtctgcgcc gtccgcgccg
     2461 gtgaaccgga acggccgctc ccggatagcc atgcgcctca acccttcctg ccggcgcccc
     2521 ttcctgactg tgccggggcg cactaagaac ccttgatgcc ctgctcccag cccctcctgc
     2581 aaccgtgacc cgcgaggacg cgcaaggccg cgacgtggcc gatccgctgg cgcgcttccg
     2641 cgacgccttc gatctgccga gcggggtgat ctatctggac ggcaattccc tgggcccgcc
     2701 gccgcttgcc gcccacgaac ggctggaacg ggtctcccgc cgagagtggg gcgaaggcct
     2761 ggtgcgcagc tggaatgcgg cggcctggat cgaggccccg ttgcgggtcg gcggcaagat
     2821 cgcccgcctg atcggggcca aggcgaacga ggtcgcggtc gcagactcca cctcggtgaa
     2881 tatcttcaag ctggccgccg gcgccctgtc gctgcggccc ggccgcacga ccatcctttc
     2941 ggaaaccgga agttttccga cagacctcta cgccctgcag ggcctggtcg ccctgctggg
     3001 cgatcgggcg cggctgaaga ccgtggccgc caccgacctg gtggccgcga tcgacgagga
     3061 caccgcctgc gtggtcctga cc
//
LOCUS       DATAJL010000568         1510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59714,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000568 DATAJL010000000
VERSION     DATAJL010000568.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59714"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..512
                     /locus_tag="VHN39_10860"
     CDS             <1..512
                     /locus_tag="VHN39_10860"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HemK/PrmC family methyltransferase"
                     /protein_id="HEX2816889.1"
                     /translation="LDLGVGSGAIILSILAERPAARGLGVDVSEEALAVARDNAAHLG
                     LAGRLALLRGDWTEGLEEAGFDLVVSNPPYIASHVIETLEPEVRDHEPRVALEGGPDG
                     LMHYRRLAPEILRVLKPGGRFAVEIGYDQKAPVEALFREAGAAQVQTLRDLGDRDRVV
                     AGVKNPLET"
     gene            807..>1510
                     /locus_tag="VHN39_10865"
     CDS             807..>1510
                     /locus_tag="VHN39_10865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4167 domain-containing protein"
                     /protein_id="HEX2816890.1"
                     /translation="MKRQRGRNRGGGSGGSGGGGGKPQAQNANRAFDSNGPEGSKVRG
                     NAQHVFEKYQQLARDASAAGDRVLGENYLQHAEHYFRLLRAMQPTRPASEILGRDHFS
                     SGFDIDFEDEAAQAQSEAADAASAEAGDTPETWQAREGAAQVREGGERPRDDARPQQR
                     DDRPRDAQRDDRPRDGQQRDDRPRYENRDRNENGGGGGGGGNGQGQGRRDRPWRDDRP
                     RDGQRDGQQQRDDRPR"
BASE COUNT          276 a          549 c          512 g          173 t
ORIGIN      
        1 tcctggacct gggcgtgggc tccggggcca tcatcctgtc gatcctggcc gagcggccgg
       61 ccgcccgcgg cctgggcgtc gacgtctccg aggaggcgct ggccgtcgcc cgcgacaacg
      121 ccgcccacct gggtctggca ggccggctcg ccctgctgcg cggcgactgg accgaggggc
      181 tcgaggaggc cggtttcgac ctcgtggtct ccaaccctcc ctacatcgcc agccacgtca
      241 tcgagaccct ggagcccgag gtgcgcgatc acgaaccgcg cgtggcgctc gagggcgggc
      301 ccgatggcct gatgcactat cgccgcctgg cgccggagat cctgcgggtc ctgaaacccg
      361 gcggccgctt cgccgtggag atcggctacg accagaaggc gcccgtcgaa gcgctcttcc
      421 gcgaggccgg cgcggcccag gttcagaccc tgcgcgacct cggcgaccgg gacagggttg
      481 tcgcaggcgt gaaaaatccc ttggaaacct gagcccgagt cgctacttag gaggggtctc
      541 cacccaaaat cttcggcttc aggtagaggc gtccctcgaa ggacgcacgc cggacccgag
      601 gggcgcgacg gcttccaaag cctctcgctt gacgagctcc gggcggagac ggggaacact
      661 caaaagtctt cgacattcta aatcccgggc ctggcgccca cccccgatcc aaaagtggcc
      721 cgctgaaggc tagcgcaggc cgacccgaac aaggtccggc cgtagggaaa caagacggtt
      781 atcaaataat gagagatttc aagggtatga agcgtcaacg cggccgcaat cgcggcggcg
      841 gaagcggcgg aagcggcggc ggcggcggca agccgcaggc ccagaacgcc aaccgggcct
      901 tcgattccaa cgggcccgag ggctccaagg tccgcggcaa cgcccagcac gtcttcgaaa
      961 agtaccagca gctcgcccgt gacgcctcgg cggccggcga ccgggtgctc ggcgagaact
     1021 atctgcagca cgccgaacac tatttccgcc tgctccgggc catgcagccc acccgcccgg
     1081 ccagcgaaat cctcggccgc gaccacttct cctccggctt cgacatcgat ttcgaagacg
     1141 aggccgccca ggcccagtcc gaggccgccg acgcggcctc cgccgaggcc ggcgacaccc
     1201 cggagacctg gcaggcccgc gaaggcgccg cccaagttcg cgaagggggg gagcgccccc
     1261 gcgacgacgc ccgtccccag caacgcgacg accggcccag agacgcacag cgcgatgacc
     1321 ggccccgcga cgggcagcag cgcgacgacc gcccccgcta cgaaaaccgc gaccgcaacg
     1381 aaaacggcgg cggcggcggt ggcggtggca atggccaggg tcagggccgc cgcgaccggc
     1441 cgtggcgcga cgaccggccc agagacgggc aacgtgacgg gcagcagcaa cgcgacgacc
     1501 gtcccagaga
//
LOCUS       DATAJL010000569         1664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35745,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000569 DATAJL010000000
VERSION     DATAJL010000569.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35745"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..948)
                     /locus_tag="VHN39_10870"
     CDS             complement(<1..948)
                     /locus_tag="VHN39_10870"
                     /inference="COORDINATES: protein motif:HMM:NF019335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEX2816891.1"
                     /translation="MQIRFRAALLASSALLIAAGAHAAEAPAAVNSVSDLVVTAPREE
                     AQARLRQQDAQNLIDVQSAETIAKYPDFNAAEALGRIPGVSLSSDTGEGRFVNIRGID
                     ANLNGATYGGVVLLNTFAGGTAAGGGGRAVEFDTIPTGAIDGIVLTKTRLPEQEGEGL
                     GGTVELTPRSAVHVTDPFLEGALGWGYQPLHKHTGPTNVELAGGARFGFGEHGLTIAG
                     DGQTEPVAAGWISNPYPFSFVLNASRKDDRRAVDDIEESYIDASTPPTDKTAHQYDLR
                     RYDYHRRRFGYGGELDFQPNDDHSYYARASIAGYIEAVHK"
     gene            1236..1439
                     /locus_tag="VHN39_10875"
     CDS             1236..1439
                     /locus_tag="VHN39_10875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816892.1"
                     /translation="MARSTDPFRYFDSSPEVIRLVVMMYIKYPLSLRNVEDLLFERGI
                     DICHETVRLWWNRFGPMFAAEIR"
BASE COUNT          266 a          525 c          571 g          302 t
ORIGIN      
        1 cttgtgcacc gcctcgatgt agccggcgat gctagcgcgg gcgtagtagc tgtgatcgtc
       61 gttcggctgg aagtccaact ccccgccata gccaaagcgg cggcgatggt agtcgtagcg
      121 gcgcaagtcg tactggtggg cggtcttgtc ggtcggcggc gtgctggcgt cgatatagct
      181 ttcctcgatg tcgtcgacgg cccgccggtc gtccttgcgc gaggcgttga ggacgaagga
      241 gaacggatag gggttcgaga tccagcccgc cgcgaccggt tcggtctggc cgtcgccggc
      301 gatggtcagc ccatgctcgc cgaagccaaa ccgcgcgccg ccagccagct ccacattggt
      361 ggggccggtg tgcttgtgca ggggctggta gccccagccc aaggcgcctt cgaggaaggg
      421 gtccgtgacg tggaccgcgc tgcggggagt caattcgacc gtgccgccca gaccttcccc
      481 ctcctgctcg ggcagccggg tcttggtgag gacgataccg tcgatggccc cggtggggat
      541 ggtgtcgaac tcgaccgcac gcccgccgcc gccggccgcc gtgccgccgg cgaaggtgtt
      601 cagcaggacg acgccgccat aggtcgcgcc gttcaggttt gcatcgatgc cgcggatgtt
      661 gacgaagcgg ccttcgccag tgtcgctgga gagcgatacg ccgggaatcc gtccgagcgc
      721 ctcggcggcg ttgaagtccg ggtatttggc gattgtctcc gcggactgca cgtcgatcag
      781 gttctgcgcg tcctgctggc gcagacgcgc ctgggcttct tcgcgcggcg ccgtcaccac
      841 gagatcgctg accgagttga ctgcggccgg ggcctccgct gcgtgtgcgc cggctgcgat
      901 caagagggcg ctggaggcca ggagggccgc ccggaatcgg atctgcattg aaatcacccc
      961 tcacacatgt ccgtatacgg acgataggag gcggcgccca tgcgccggcc cgctcaccca
     1021 gcggttgtga gaggggtttg tgcaggtgac gtgacggttt gttgaaagct cggcgacaac
     1081 ggcaaagctc gcggctctcg aattggcgcc ggctggacaa ttgggggtgt cacccgtccg
     1141 tcgcgcgaag gatgatagct gttcgcatca ccctcggggg cattgtcagc ccaaacttca
     1201 gggcccggta acgggacacc ccgtagcccc agcccatggc ccgatcgacc gacccgttcc
     1261 gctactttga ctcatcgccc gaggtcatcc gcctcgtggt gatgatgtac atcaagtacc
     1321 ccctgtcgct gcgcaacgtg gaggacctgc tcttcgagcg cggcatcgac atctgccacg
     1381 agacggtgcg cctgtggtgg aaccgtttcg gtccgatgtt cgccgccgag atccgttaga
     1441 agcgggtcga tcggatgcgc gcccacaccc actaggaagc aaaccttagc cgactagcgg
     1501 ttcggtatta cttcccggat cagcgatggc gagcaaatcc tgctggctgc ggcggcggtg
     1561 cggcggcgaa ggtgggcgac ggatttgccg acgatggacg gagacgcccg atcgcgaacc
     1621 tcaatgagtc cagtgcggtc tgaactccca ggcctcatct cgca
//
LOCUS       DATAJL010000570         1611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68349,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000570 DATAJL010000000
VERSION     DATAJL010000570.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68349"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..190
                     /locus_tag="VHN39_10880"
     CDS             <1..190
                     /locus_tag="VHN39_10880"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2816893.1"
                     /translation="PYEVNNIQLAFEANDPANFPTSVPEPATWGLMLAGFAGLGAVMR
                     RRRVLDQARGHGRLAGID"
     gene            260..721
                     /locus_tag="VHN39_10885"
     CDS             260..721
                     /locus_tag="VHN39_10885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816894.1"
                     /translation="MLLLVAPTSIDAQGRRAGELELRSPNGALAATLKPISADCSESV
                     VTIHGAGHAVVRSFTSTDCQHGYEVNQAKWTPDSRFFVFNLRSSGGHQPMNQSLWRYD
                     RQTGDIQEVRLPDNVVPSTFRLRPRDHLALQVWNVDRQADGRIDVDLRAAR"
     gene            824..>1611
                     /locus_tag="VHN39_10890"
     CDS             824..>1611
                     /locus_tag="VHN39_10890"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEX2816895.1"
                     /translation="MRAYRFDSFDSLDELRVREEADPQPQRGEVLVRVHAVSLNFRDL
                     AMLRGRYPRKCVPGLIPVSDAAGEIVAIGEEVEAFKVGDRVIGAFHPRWFGGEMPSTI
                     ATDSYGAESDGWLCELKALSQEAVVRLPDALSYEEGSTLPCAGVTAWTALTGPTPIRA
                     GHTVLVQGSGGVSIFALQLAHAVGATVIATTSSARKAEQLSALGAAEVVNYVDEPQWG
                     KAVRALTGGRGVDRVVEVGGPGTIAQSLRAVALGGEIASIGFLST"
BASE COUNT          246 a          533 c          575 g          257 t
ORIGIN      
        1 cccctatgag gtcaacaaca tccagctcgc gttcgaggcc aacgatcccg cgaactttcc
       61 cacctcggtt cccgaacccg cgacgtgggg cctgatgctg gccgggttcg cgggcctggg
      121 cgcagtgatg cgccgccggc gcgtccttga ccaagcgcgc ggccacggca gactggccgg
      181 catcgactaa tggcggggtg ggtcttggat gccgggacgt tcgaagaggc aggtccgcgt
      241 tctggctgcg gcgtccacga tgctgttgct cgtcgcaccg acgtcgatcg atgcgcaggg
      301 gcgtcgcgcc ggcgagcttg agcttcgctc ccccaacggc gcgctggcgg cgaccctcaa
      361 gccgatcagc gccgactgct ccgagagcgt cgtgacgatc catggcgcgg gtcatgccgt
      421 cgtccggagc ttcacctcga cggattgcca gcatggctat gaggtgaacc aggcgaaatg
      481 gacgcccgac tcgcgcttct ttgtcttcaa cctgcgcagc tccggcggcc accagccgat
      541 gaaccagtcg ctatggcgct acgatcgcca gaccggcgac atccaagagg tgcggctgcc
      601 cgacaatgtc gtgccgtcga cgtttcggct gcggccgcgc gaccaccttg cgctgcaggt
      661 ctggaacgtc gaccgccagg cggacggccg catcgacgtg gatctgaggg cggcccgata
      721 gctgagtaag ccgggcgcct gcggacgtcg acaggcttgg gcggttggcg catgaggttc
      781 tgacaatgga gccgttccca atggtcaggg ccgaaggtcg aacatgaggg cctaccgctt
      841 cgatagcttc gacagcctgg acgagctgcg cgtgcgcgag gaggccgatc cgcagccgca
      901 gcggggcgaa gtgctggtgc gcgtgcacgc cgtctccctc aatttccgcg acctcgccat
      961 gctgcgcggg cgctatccgc gcaagtgcgt cccgggcctg atcccggtga gcgacgcggc
     1021 cggcgagatc gtggcgatcg gcgaggaggt cgaggccttc aaggttggcg accgtgtgat
     1081 cggcgcgttc cacccgcggt ggttcggcgg cgagatgccg tcgacgatcg ccaccgacag
     1141 ttacggcgcc gagagcgacg gctggctctg cgaactcaag gcgctcagcc aggaggccgt
     1201 ggtccgcctg cccgacgccc tgtcctatga ggagggctca acgctgccct gcgcgggcgt
     1261 caccgcctgg acggcgctca cggggcctac gcccatacgc gcggggcata cggtgctggt
     1321 gcagggcagc ggcggcgtct ccatcttcgc tctgcagctg gcccacgcgg tgggcgccac
     1381 ggtgatcgcc accacgtcca gcgctagaaa agccgaacag ctcagcgcgt tgggcgccgc
     1441 ggaggtcgtg aactatgtcg atgagccgca atggggaaag gccgtccgcg cgctgaccgg
     1501 cggccgaggg gtggatcggg tggtcgaggt cgggggaccg gggaccatcg cccagtccct
     1561 ccgagccgtg gcgcttggcg gtgagatcgc ctccatcggc ttcctgagca c
//
LOCUS       DATAJL010000571         5761 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_22499,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000571 DATAJL010000000
VERSION     DATAJL010000571.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5761)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5761)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5761
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22499"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..549
                     /locus_tag="VHN39_10895"
     CDS             <1..549
                     /locus_tag="VHN39_10895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2816896.1"
                     /translation="ANPVPVLLRLLLRLQERRLDEGYPEFQPSNLEITRIDVPNTATN
                     VIPGTARAQLNIRFNPHHTGEDLARWIEDAAASEADGFKGTVSVVPQISGEAFLTEPG
                     PFTEVAALAVQDIAGRRPELSTSGGTSDARFIRALCPVVALGLVGATMHQVDERAPVA
                     EILKLQAVYERLIERYFEAFAE"
     gene            complement(708..1448)
                     /gene="truA"
                     /locus_tag="VHN39_10900"
     CDS             complement(708..1448)
                     /gene="truA"
                     /locus_tag="VHN39_10900"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEX2816897.1"
                     /translation="MPRYRLILEYDGGPYNGFQAQADQPTVQGSLERAVKAFCGEAVR
                     VHAAGRTDTGVHATGQVAHIDLDKDWPAETVRNALNAHLRPEPIVVLDAEVAVGDWHA
                     RFSAIERRYRYRILNRASPPGLEQGRVWHVKAPLDAEAMHAAAQVLVGHHDFTTFRDV
                     ACQAKSPVKTLDVASVARVGDEVALVFEARSFLHRQVRSMTGSIAEVGLGRWTADDLK
                     AALEARDRTACGQVAPADGLYLTGVSYE"
     gene            complement(1448..2374)
                     /gene="fmt"
                     /locus_tag="VHN39_10905"
     CDS             complement(1448..2374)
                     /gene="fmt"
                     /locus_tag="VHN39_10905"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017504961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEX2816898.1"
                     /translation="MRLAFLGTPDFALAALKRLVAAGHEIACVYSQPPAPRGRGQALR
                     PSPVQAFAEEQGLSVRTPVSMRDPAEIAAFQALNLDVACVVAFGQILPAAVLEAPLLG
                     AFNLHGSLLPRWRGAAPIQRAIMAGDPLTGVEVMRMTEGLDEGPVLASETVRIGPRDT
                     AGTVHDRMAAVGAELLARTLPLIEQGRAIETPQSETGVTYAKKIGPKVARIVWEKPGA
                     EIDRKIRGLSPFPGAWFLLPTDKGPVRVKALLSAFEDADGPAGQVLDDRLLVAAGEGA
                     VRLLRVQREGRGPQDAEAFLRGQPAAIGTVLG"
     gene            2472..2819
                     /locus_tag="VHN39_10910"
     CDS             2472..2819
                     /locus_tag="VHN39_10910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816899.1"
                     /translation="MRNSHLAVILGVWLAVAACSKPTQDKTSNDLKAVGSDVGAAAKD
                     VAGAPAMKQLGSDIKQGTEEAAAKTKVAADEAGDKLKAGAEKAGSDIKSGAQAAGDKT
                     DAALNKAKDDVKK"
     gene            complement(2867..3376)
                     /locus_tag="VHN39_10915"
     CDS             complement(2867..3376)
                     /locus_tag="VHN39_10915"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEX2816900.1"
                     /translation="MALRDILVVPDPILKKVSARVDVVDDELRALMDDMLETMYAAPG
                     IGLAAIQVGVAKRVIVMDLARQEEPPAPQYFVNPEILWASDETAPYEEGCLSVPEIYD
                     EVERPSQVKIRYQTYQGETVEEDAEGLYAVCIQHEMDHLDGVLFIDHLSRLKREQAVK
                     KVKKQAKAA"
     gene            complement(3441..4649)
                     /locus_tag="VHN39_10920"
     CDS             complement(3441..4649)
                     /locus_tag="VHN39_10920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HEX2816901.1"
                     /translation="MNGSLIFAFACAVVAVAAIGWALWERQRGRMQLDMARTQAELFS
                     SQVTQSATGVAEAILKKNEEAIHSREQLAQARLEAQLKPVAESLQKFQEHVALAEKVR
                     VEETGGLKEQIAALLLASTATQDEARKLSAALRRGAGVQGRWGEQTLRNVLEAAGLAH
                     RYDFDEQTTTDTEEGRRRPDVTVKLPGGGVFVIDAKCSLNAFLEMQDAPDEATREACG
                     ARHVQSVRTHVQGLSAKAYWDQFESSPDFVAMFVPLDSAMAAALERAPDLMTEAMDKR
                     VVIVTPTTLFALCKAVVYGWRVEEQAANAQKIAELGRELYKRIAVMGGHAGSVGKALE
                     AAVARYNQFVGSLETQVLTQARRFEELKVDHEGKTVELLEPLDTAVRPLTKLTPETPP
                     QVRLVAGDES"
     gene            complement(4682..5284)
                     /gene="recR"
                     /locus_tag="VHN39_10925"
     CDS             complement(4682..5284)
                     /gene="recR"
                     /locus_tag="VHN39_10925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HEX2816902.1"
                     /translation="MAASAGPEIERLISLLSKLPGLGPRSARRAALALLKKRDQLLTP
                     LAEALADAAARVKVCSDCGSLDTQDPCAICSDGSRDPTLICVVEEVGALWAMERASAF
                     RGRYHVLGGLLSALDGVGPEALRVNGLVTRAAQGEVREVVLALPATVDGQTTAHYLAD
                     RLGKADVSVTMLARGVPVGGELDWLDDGTIAQAMRARRPA"
     gene            complement(5286..5606)
                     /locus_tag="VHN39_10930"
     CDS             complement(5286..5606)
                     /locus_tag="VHN39_10930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012639925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEX2816903.1"
                     /translation="MKDLGSLMKQAQAMQEKLGAAQAELEQLVLLGQAGDGLVKVTLK
                     GTGQITRVDIDESLMAPGEAGMVGDLVAAAHADAKRHLDARSAELMQKAAGPLAGLPG
                     MPKF"
BASE COUNT          855 a         2152 c         1876 g          878 t
ORIGIN      
        1 gccaatcccg tccccgtcct gctgcgcctg ctgctgcgcc tgcaggaacg ccggctggac
       61 gagggctatc cggagttcca gccgtcgaac ctggagatca cccgaatcga cgtgcccaac
      121 accgccacca acgtgatccc cggcacggcc cgcgcccagc tcaacatccg cttcaacccg
      181 catcacaccg gcgaggacct ggcccgctgg atcgaggacg cagcggcgtc cgaggccgac
      241 ggcttcaagg gaacggtctc ggtcgtcccg cagatcagcg gcgaggcctt cctgaccgag
      301 cccggcccct tcaccgaggt cgccgccctg gccgtccagg acatcgccgg gcgccgtccc
      361 gagctctcca cctcaggcgg cacctccgac gcgaggttta tccgcgcgct ttgccccgtc
      421 gtcgcactcg gcctcgtcgg cgccaccatg caccaggtgg acgaacgcgc cccggtggcg
      481 gagatcctca agctgcaggc cgtctatgaa cggctcattg agcggtattt cgaggcgttc
      541 gccgaatagg ccttctcccc ttgcgggaga aggtggcctg cgaggcaggt cggatgaggg
      601 gtttctcagg cttccagaaa gccgacggcg gaacccggat ggcggagcgc gacccctcat
      661 ccgtcagcct ccggcagaca ccctctcccg cgacgggaga aggatcacta ttcgtaactt
      721 acccccgtca gatagaggcc atccgccggc gccacctggc cgcaggcggt gcggtcccgg
      781 gcctccagcg cggccttcag gtcgtccgcc gtccagcggc ccaggcccac ctcggcgatg
      841 gagccggtca tcgaccggac ctggcggtgc aggaaggaac gggcctcgaa caccagcgcc
      901 acctcgtcgc cgacccgcgc gacgctcgcc acgtccagcg tcttcaccgg cgacttcgcc
      961 tggcaggcca cgtcgcggaa ggtggtgaag tcgtggtggc cgaccagcac ctgagcggct
     1021 gcgtgcatgg cctcggcgtc cagcggcgcc ttcacatgcc agacccggcc ctgctccagt
     1081 cccggcgggc tcgcccggtt gaggatgcgg tagcggtagc gccgctcgat cgccgagaac
     1141 cgtgcgtgcc agtctcccac cgcgacctcg gcgtccaaca ccacgatcgg ctcgggccgc
     1201 aggtgggcgt tcagcgcatt gcgcacggtc tccgccggcc agtccttgtc caggtcgata
     1261 tgcgccacct ggccggtggc atggaccccg gtgtcggtgc gcccggcggc gtggacgcgc
     1321 acggcctcgc cgcagaaggc cttcaccgcc cgctccagcg agccctgcac cgtcggctgg
     1381 tccgcctggg cctggaagcc gttgtagggc ccgccgtcat attcgaggat cagccggtag
     1441 cggggcatca gccgagcacc gtcccgatgg ccgccggctg gccgcgcagg aacgcctcgg
     1501 cgtcctgcgg tccgcgcccc tcgcgttgca cgcgcagcag ccgcacggcg ccctctcccg
     1561 ccgccaccag caaccggtcg tccagcacct ggcccgccgg tccatcggcg tcctcgaagg
     1621 ccgacagcag ggctttcaca cgcaccggcc ccttgtcggt gggcagcagg aaccaggcgc
     1681 ccgggaaggg cgagagccca cggatcttgc ggtctatctc agcgccgggc ttctcccaga
     1741 cgatgcgggc caccttgggt ccgatcttct tggcgtaggt gacacccgtc tcgctctgcg
     1801 gcgtctcgat ggcgcgaccc tgctcgatca gcggcagggt gcgggccagg agctccgcgc
     1861 ccaccgccgc catccggtcg tgcacggtcc cggccgtgtc ccgcggcccg atgcgcacgg
     1921 tctcgctggc caacaccgga ccttcgtcca gcccctcggt catccgcatg acctcgacgc
     1981 cggtcagggg gtcgccggcc atgatcgccc gctggatcgg ggctgcgccc cgccacctcg
     2041 gcaacagcga gccatgcagg ttgaacgcgc ccagcaaggg cgcctccagc accgcggccg
     2101 gcaggatctg gccgaaggcg accacgcagg ccacgtcgag gttcagcgcc tgaaaggcgg
     2161 cgatctccgc cgggtcgcgc atggagacgg gcgtgcggac gctcagcccc tgttcctcgg
     2221 cgaaggcctg caccggcgag ggcctcagag cctgcccacg gcccctgggg gccggcggct
     2281 gcgaatagac gcaggcgatc tcgtgcccgg ccgccacgag gcgtttcagc gccgcgagcg
     2341 cgaagtcagg agttcccagg aaggcgaggc gcatgtgcgc cgcttctacc tgcgagggaa
     2401 gaaccgcgca aaggcccgga acttgctcta gagcttaaca gttcgttaac agggccctta
     2461 aggaacacgc catgcgcaat tcccacctcg ccgtcatcct gggcgtctgg ctcgcggtcg
     2521 ccgcctgttc caagccgacg caggacaaaa cctccaatga cctgaaggcg gtcggctccg
     2581 atgtcggcgc cgcggccaag gacgtcgccg gcgcgccggc catgaagcag ttgggctcgg
     2641 acatcaaaca gggcacggaa gaagccgccg ccaagaccaa ggtcgccgcc gacgaggccg
     2701 gcgacaagct gaaggccggc gccgaaaagg ccggctcgga catcaaatcg ggcgcccagg
     2761 ccgccggcga caagaccgac gcggcgctca acaaggccaa ggatgacgtg aagaagtgag
     2821 cgcgcagcga ctcatcccgg cgaaggccgg gatccagtag caaaggctac gccgccttcg
     2881 cctgcttctt caccttcttc accgcctgct cgcgcttcag ccgtgacagg tggtcgatga
     2941 acagcacccc gtccaggtgg tccatctcgt gctggatgca gacggcgtag aggccctcgg
     3001 cgtcctcctc gaccgtctcg ccctggtagg tctggtagcg gatcttcacc tgcgacgggc
     3061 gttcgacctc gtcatagatc tccggcaccg acaggcagcc ctcctcgtag ggcgcggtct
     3121 catccgaggc ccagaggatc tccggattga cgaaatactg cggcgccggc ggctcctcct
     3181 gccgggcgag gtccatgacg atcacccgct tggccacgcc cacctggatc gcggccaggc
     3241 cgatgccggg cgcggcgtac atggtctcca gcatgtcatc catcagagcc cgcagctcat
     3301 cgtcgaccac gtcgacgcgc gccgagacct tcttcaggat cgggtcggga acgacgagga
     3361 tgtctctgag cgccatgggg cggacgtaag agggctattc ccgaccgtca aggtaggaga
     3421 cgaagagtcc catcctgcaa tcagctctcg tcgcccgcca ccagccgcac ctgcggcggg
     3481 gtttccggcg tcagcttggt cagcgggcgg accgccgtgt cgagcggctc cagcagttcc
     3541 acggtcttgc cctcatggtc gaccttcagc tcctcgaagc gccgcgcctg ggtgaggacc
     3601 tgggtctcca ggctgcccac gaactggtta tagcgcgcca ccgccgcctc cagcgccttg
     3661 ccgaccgagc ccgcatggcc ccccatcacc gcgatgcgct tgtagagctc gcgccccagc
     3721 tcggcgatct tctgggcgtt ggccgcctgc tcctcgaccc gccagccgta gaccaccgcc
     3781 ttgcagagcg cgaacagcgt cgtgggcgtg acgatcacca cgcgtttgtc catggcttcg
     3841 gtcatcaggt caggcgcccg ctcgagcgcc gcggccatgg ccgagtccag cggcacgaac
     3901 atcgccacga agtcgggcga agactcgaac tggtcccaat aggccttggc cgacagcccc
     3961 tggacgtggg tccgcacgct ctggacgtgg cgggcgccac aggcctcgcg cgtcgcctcg
     4021 tcgggggcgt cctgcatctc caggaaggcg ttcagcgagc acttggcgtc aatgacgaag
     4081 acgccgccgc ccggcagctt cacggtcacg tccggccgtc ggcggccctc ctcggtgtcg
     4141 gtcgtcgtct gttcgtcgaa gtcgtagcgg tgcgccaggc ccgcggcctc cagcacattg
     4201 cgcagggtct gctcgcccca gcgcccctgc acgccagccc cgcgccgcag cgccgccgag
     4261 agcttgcgcg cctcgtcctg cgtcgccgtc gaggccagca gcagggccgc aatctgttcc
     4321 ttcaggccgc cggtctcctc gacccgcacc ttttcggcca gcgccacgtg ctcctggaac
     4381 ttctgcaggc tctcggccac cggcttcagc tgcgcctcca gcctggcctg ggccagctgc
     4441 tcgcggctgt ggatcgcctc ctcgttcttc ttgaggatcg cctcggccac gcccgtcgcc
     4501 gactgggtca cctggctgct gaacagctcg gcctgggtcc tggccatgtc gagctgcatc
     4561 cgcccccgct ggcgctccca gagcgcccag ccgatggcgg ccaccgcgac gacggcgcag
     4621 gcaaatgcga aaatcagtga tccgttcatg ctgtgttctt agcgggttag ctgagtcgcc
     4681 gctaggccgg ccgccttgcc cgcatcgcct gcgcgatggt gccgtcgtcg agccagtcga
     4741 gctcgccgcc caccggcacg ccgcgggcca gcatggtcac cgagacgtct gccttgccca
     4801 gccggtcggc gaggtagtgg gcggtagtct ggccgtcgac ggtggcgggc agcgccagca
     4861 ccacctcgcg gacctcgccc tgcgcggccc gggtgacgag gccgttcacg cgcagcgcct
     4921 cgggccccac cccgtccagc gccgacagca agccccccag cacgtgatag cggccccgaa
     4981 aggcgctcgc ccgttccatg gcccagagcg cgcccacctc ctcgaccacg cagatcaggg
     5041 tcggatcgcg cgacccgtcg ctgcagatcg cgcaggggtc ctgggtgtcc agcgagccgc
     5101 agtccgaaca caccttcacg cgcgccgcgg cgtccgcgag cgcctcggcc agcggggtca
     5161 ggagctggtc gcgtttcttc agcagcgcca gcgccgcgcg cctggccgac cgcggcccca
     5221 ggcccggcag cttggagagc aggctgatca gccgctcgat ctcgggtccg gcggaggcgg
     5281 ccaagtcaga acttcggcat gccgggcaag ccggccagcg gcccggccgc cttctgcatc
     5341 aactcggccg agcgggcgtc caggtggcgc ttggcgtcgg cgtgcgcggc ggccaccagg
     5401 tcaccgacca tcccggcctc gcccggagcc atcaggctct cgtcgatgtc gacgcgggtg
     5461 atctggcctg tgcccttcag cgtcaccttc accagtccgt cgccggcctg gcccagcagc
     5521 accagctgct ccagctcggc ctgggcggcg cccagcttct cctgcatggc ctgggcctgc
     5581 ttcatcagcg agccgaggtc tttcatttgc ccaggtcctt cacttggccg gctccttcat
     5641 ctgcggcatc gcttcggtca tcgcggcggt ccccgtcttg gcgatctgca ccaccaccag
     5701 ctgggcggcc tccgtgcggc tggcgttgac gatatagtgc ggctggagcg gagtttcaga
     5761 c
//
LOCUS       DATAJL010000572        11126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59751,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000572 DATAJL010000000
VERSION     DATAJL010000572.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 11126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11126
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59751"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..493)
                     /locus_tag="VHN39_10935"
     CDS             complement(<1..493)
                     /locus_tag="VHN39_10935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816904.1"
                     /translation="MTDSAPPKRSPLAFFAVVLALAVPIWLLSRFVGVIGSLKIPVTD
                     LMLGFTPLTAAVILIWRQEGARGVVSLLKRAVDVRGLARTRWFLPVVLLTPLVYLLTY
                     VALHLAGHGGAVEPHLLRLPLLAAIMFLLAIGEEGGWTGYLIDPLQARWGALGASLII
                     ALPW"
     gene            complement(537..857)
                     /locus_tag="VHN39_10940"
     CDS             complement(537..857)
                     /locus_tag="VHN39_10940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2Fe-2S iron-sulfur cluster-binding protein"
                     /protein_id="HEX2816905.1"
                     /translation="MAKITYIEHDGTEHVIEVKTGLTVMEGAVKNNIPGIDADCGGAC
                     ACATCHVYVDEAWRDKTGSSSAMEESMLDFAENVEPNSRLSCQIKVTDALDGLVVRMP
                     ESQH"
     gene            complement(886..2130)
                     /locus_tag="VHN39_10945"
     CDS             complement(886..2130)
                     /locus_tag="VHN39_10945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2816906.1"
                     /translation="MSDTIPANLAAHVVILGAGHAGGTAAALLRQYGFTGPITLVGSE
                     PIPPYQRPPLSKAWLKGEADADSLALKPLEFYAEHDIDFRASTTATAINRGARTVTLS
                     DGSTVSYDALIIATGARAIALPIPGADLDGVMFLRTAADAETLKATVGPGKRLAVVGG
                     GYIGLEVAASGRALGAEVVVLEREDRLLARVACDTLSTFFKTQHEAHGVTFELGATAT
                     AFEGADGHVTGVTLADGRTIACDAVVVGVGAHPNDDLAKDCGLEVARGVTVDLEARTS
                     DPAIFAIGDVAHRPMPIYGRMFRMESVPNALEQAKQAAAAITGRPPPAGEVPWQWSDQ
                     YDLKLQIAGYAFDVDEILVRGDPASARFAVFHLKGDLVQSVEAINSPPEFMMGKQLIL
                     ARRPVSKARLADPSISMKEVAA"
     gene            complement(2209..4053)
                     /locus_tag="VHN39_10950"
     CDS             complement(2209..4053)
                     /locus_tag="VHN39_10950"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 domain-containing protein"
                     /protein_id="HEX2816907.1"
                     /translation="MRAIGLAFLLAVTTAPLSLLAAPAAEAQASAPAQSEEARFTAFL
                     DKEFAQEVALKPQLATRLGLKQDMGKLDDISDAAQLKLLEWRRASVARMKAGFDRAKL
                     PPAAQASYDMWALELDRAETSYRFRRYQPPFYSFLYSVHSELPNFLINTHVVRDGDDM
                     AAYVSRLRAMPAVFDIAIAQSQQSDALGIRAPRFEVERVISGSRQMITGAPFDAPNSE
                     KGGTDSPLWADIKAKIGKLQSTDALTPARAQALMDDAKAALLGLKPPYERVIAWAEAD
                     LPKAPSGKVGAITLPNGVAWYAAALKLNTTTDLTPDQVNRLGLSEVTRIEAAQDALAR
                     SAGFKDRQAYYDERARLFPPTPWTDAIRADYLRAYNAAVVNNRRLLPAFFGALPVYKA
                     EVVREPSFSEVAGGAAHASGPSPDGTRPGRVYIHMLGVTDDPANITDLMCHEGIPGHV
                     MQGDIQARQKGIPKFRSAYRYVAYGEGWALYTEALCKEMGAYPDIASDFFRLDAELFR
                     AARLVTDTGIHAKGWTEDQAVDYMIKTGRRPPNQARSEVRRYITLPGQATGYKIGMLK
                     IMELRAKAQRELGRKFDIKAYDDLVVGEGSVPLTVLEHSVDDWIASRK"
     gene            complement(4053..4835)
                     /locus_tag="VHN39_10955"
     CDS             complement(4053..4835)
                     /locus_tag="VHN39_10955"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008177 - succinate dehydrogenase
                     (ubiquinone) activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HEX2816908.1"
                     /translation="MAELVLPKNSRVTKGRHHPAPEGAKKIKTFRVYRYDPEGTENPR
                     WDTYDVDVEACGPMVLDALIYIKNEIDPTLAFRRSCREGVCGSCAMNIGGRNTLACTH
                     GWEDVPGKDVQISPLPHMPVMKDLVPDLTQFYAQYASIEPWLHTETPEPQKEWLQSPE
                     DREKLDGLYECILCACCTTSCPSYWWNQDKYLGPATLLQSYRWLIDSRDEATGERLDA
                     LEDPFKLYRCHTIMNCAQVCPKGLNPAKAIAEVKKMLVDRVV"
     gene            complement(4845..5600)
                     /locus_tag="VHN39_10960"
     CDS             complement(4845..5600)
                     /locus_tag="VHN39_10960"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2816909.1"
                     /translation="MAADDMATAGRDTDADWRELGATEPYWGVLSHPDFRRDKITPAL
                     VDQFYESGPFHIGPIAEGLKSLTGDLPSGRALDFGCGVGRLAEAMTAYASEVTGLDIS
                     PGMLELARKRGSKVTYVDQLPAGPFDWINSFIVFQHIPPDRGLSILADLLARLAPGGM
                     VSIQLTIWRDANRQWPQEQGFLKNLFRKQRQQRWIRNLPVGHIHMYDYDLSRVVRLLN
                     QAGIEEMKLVSTNHDGHRGVIILGRKTAELYQS"
     gene            complement(5610..7397)
                     /gene="sdhA"
                     /locus_tag="VHN39_10965"
     CDS             complement(5610..7397)
                     /gene="sdhA"
                     /locus_tag="VHN39_10965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519015.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HEX2816910.1"
                     /translation="MATYEFIEHKYDVVVVGAGGSGLRAALGCAAAGLKTACISKVFP
                     TRSHTVAAQGGISASLGNMSEDDWRWHMYDTVKGSDWLGDQDAIEYLVRNAPAAVYEL
                     EHWGVPFSRTPEGKIYQRAFGGMTRNFGEAPIQRTCAAADRTGHAMLHTMYGQALAKK
                     TEFFIEFFALDLIMDEGVCRGVTAWKLDDGTLHRFQAQQVILATGGYGRAYFSCTSAH
                     TCTGDGNGMVLRAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLTNSEGERFME
                     RYAPSVKDLAPRDMVSRAMTIEIREGRGVGPKKDHINLHLDHLDPKVLHERLPGISES
                     ARIFAGVDVTKEPIPVLPTVHYNMGGVPTNFYSEVVTKAGRNPDKVVPGLMAVGEAAC
                     VSVHGANRLGSNSLIDLVVFGRSAALRCADTIKAGATQVELKPATTDGHLARFDRLRT
                     AKGKTTTAALRLEMQHAMQEDAAVFRTGKSLISGVKRMETVQKKRKDLAVSDRGLIWN
                     TDLMETLELDNLIGQAVVTVVGANNRQESRGAHAREDFAARDDKTWMKHTLTWFDDAT
                     GKVKIDYRPVHDFTMTSDIAPIPPKARVY"
     gene            complement(7401..7793)
                     /gene="sdhD"
                     /locus_tag="VHN39_10970"
     CDS             complement(7401..7793)
                     /gene="sdhD"
                     /locus_tag="VHN39_10970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, hydrophobic membrane
                     anchor protein"
                     /protein_id="HEX2816911.1"
                     /translation="MVSYRTPLGRARGLGSAKHGAGHWLSERVSAIALVPLVIWMVYG
                     ILRLSAGDYGFAVHWVQDPLNATLTVLTFAISFWHMHSGVRVVVEDYIHKTLTKSVLL
                     LANLFICGLAGALAIFAILKVALSGGAV"
     gene            complement(7793..8224)
                     /gene="sdhC"
                     /locus_tag="VHN39_10975"
     CDS             complement(7793..8224)
                     /gene="sdhC"
                     /locus_tag="VHN39_10975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045282 - plasma membrane succinate
                     dehydrogenase complex [Evidence IEA];
                     GO_function: GO:0000104 - succinate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase, cytochrome b556
                     subunit"
                     /protein_id="HEX2816912.1"
                     /translation="MTDASKTRREPPTSPHLVTGGLGSPLLWRWHITMWTSILHRATG
                     CALYVGGLIAAAWAIALAAGPERYAQFKELLGSWPGKVVMLGLTVCVFYHLANGVRHL
                     VWDTGRGLDVKSANASAVVVFAFAAAATLAIWGLASMTGAL"
     gene            complement(8289..8600)
                     /locus_tag="VHN39_10980"
     CDS             complement(8289..8600)
                     /locus_tag="VHN39_10980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816913.1"
                     /translation="MNTFLVERTIPAAFHAEDPEQVALHARWAVDAYRDVGAFWIGGV
                     ITEDRMWSLVTAEAADDLTRYRQSLGIADQDMTVRRVVRPIGPYFAAPRGSVRPIGAA
                     R"
     gene            8697..9578
                     /locus_tag="VHN39_10985"
     CDS             8697..9578
                     /locus_tag="VHN39_10985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX2816914.1"
                     /translation="MRFDLTDLRLFCEVVDAGSITAGAEKSALALAAASTRIRGMEEA
                     LGAPLLIRSRQGVTPTEAGRTLLRHARTLLAQSARLREDLSAYAGGMSGEVRLLANTN
                     ALTEFLPEALSAFLADHPQVSVDLEEKLSDEIVGLVAEGVADVGIVAGTVDVGALTTY
                     PFRSDRFVVVTAVGHPLARHESVHFAQALDYDFVGLDRAASLQRFLAGKAAREGRPLR
                     LRVQLRSFDAVCRLVECGVGVGVVPQTTAARAAKTMALAVTDLADDWALRELTIVVRA
                     GDELRPYAKALVESLRS"
     gene            9613..10200
                     /locus_tag="VHN39_10990"
     CDS             9613..10200
                     /locus_tag="VHN39_10990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816915.1"
                     /translation="MNQTEIAVTLLSFIYVVALTHVLQCFRDLWITRERVLPSASLLA
                     WMTAMLLFAIVTWFPLASANGVVLSGWRLGARLLFAIGVYFCCAFVSPSVPDEGVLDL
                     KNYESRNGAGFKLTFLALAALSIPMNSDLHKPGGLPAVEVPAFLLSQWFVAVSALITL
                     LSLWRRERWVRTICGLSLATLNGWVLLRNMGLLPG"
     gene            complement(10207..>11126)
                     /gene="zapE"
                     /locus_tag="VHN39_10995"
     CDS             complement(10207..>11126)
                     /gene="zapE"
                     /locus_tag="VHN39_10995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HEX2816916.1"
                     /translation="RGKSMLMDLFFEAVPVENKRRTHFHVFMGEIHRLIGIWRTSDAA
                     ARKARFGQHKGDDPIVPVADVVAETARLLCFDEFQVTDIADAMILGRLFEALFARGVT
                     LVATSNRAPDALYKDGLNRQLFVPFIDLLKSRLEVVSVAGHHDYRLDRLRAAGTWFSP
                     VDPHNRHSFEALWRDMLGPEEESGATLEVLGRKIMLPHASGGLVRATFTSLCSVALGP
                     NDYVALADHFHTVFLDDVPKLTPARREEARRLVILIDALYEAQTRLIVLAEAQPAELY
                     PAGDGSFEFERTASRLEEMRSADWLEEPA"
BASE COUNT         1682 a         3650 c         3945 g         1849 t
ORIGIN      
        1 accaggggag tgcgatgatc aggctggcgc cgagcgcgcc ccagcgcgcc tgcagcggat
       61 cgatgaggta gcccgtccag ccgccttcct cgccgatggc gagaaggaac atgattgcgg
      121 ccagcagggg caggcgcagc agatgcggct ccacggcccc gccatgtccg gcgagatgca
      181 gggccacata ggtcaggaga tagaccagcg gcgtcaagag cacgacggga aggaaccacc
      241 gcgtgcgcgc cagtccgcga acgtcgaccg cgcgcttcag gagcgagacg accccgcggg
      301 cgccctcttg ccgccagatg aggatgacgg ccgccgtcag gggcgtgaac cccagcatca
      361 ggtcggtcac ggggatcttc agcgacccga tcacgccgac gaaccggctg agcagccaaa
      421 tggggacagc cagcgccagg accaccgcga agaaggccag cggcgacctc ttgggtggcg
      481 cgctatcggt cacggtcgga tcgtcatcgg gccgcgccgc gcatgattgc agtcccttag
      541 tgctggctct ccggcatccg gaccaccaac ccgtccagcg cgtccgtcac cttgatctgg
      601 caggatagcc ggctgttggg ttccacgttt tcggcgaagt cgagcatgga ttcctccatg
      661 gccgaggagg agccggtctt gtcgcgccag gcttcgtcca catagacgtg gcaggtggcg
      721 caggcgcagg cgccgccgca gtcggcgtcg atgccgggga tgttgttctt caccgcgcct
      781 tccatgacag tcaggccggt cttcacctcg atgacgtgct cggtcccgtc gtgctcgatg
      841 taggtaatct tggccataaa cccctcggaa cccctcgacg ccgttctacg cggcgacctc
      901 tttcatggaa atggatgggt ccgcaagtct ggccttggag accgggcggc gggcgaggat
      961 gagctgcttg cccatcatga actccggcgg cgaattgatc gcctcgacgg attgcaccag
     1021 atcgcccttc aggtggaaga ccgcgaacct ggctgacgcg gggtcacccc ggaccaggat
     1081 ttcgtccacg tcgaaggcgt agccggcgat ctgcagcttc agatcgtact ggtcggacca
     1141 ctgccagggg acctcgccgg cggggggcgg acggccggtg atggcggcgg cggcctgctt
     1201 ggcctgttcc agagcattgg gcacgctctc catgcggaac atgcggccgt agatcggcat
     1261 cggccggtgg gccacgtcgc cgatggcgaa gatggcgggg tcggaggtgc gggcctccag
     1321 gtccacggtg acgccgcggg cgacctcgag gccgcagtcc ttggccaagt cgtcattggg
     1381 gtgtgcgccg acgcccacca cgaccgcgtc gcaagcgatg gtgcggccgt cggccagggt
     1441 gacgccggtg acgtggccgt cggctccctc gaaggccgtg gcggtggcgc ccagctcgaa
     1501 ggtgacgccg tgggcctcgt gctgggtctt gaagaaggtc gacagggtgt cgcaggccac
     1561 gcgggccagc aggcggtcct cgcgctccag caccaccacc tcggcgccca gcgcccggcc
     1621 ggaggcagcg acctccaggc cgatatagcc gccgcccacc accgccaggc gcttgcccgg
     1681 cccgacggtg gccttgagcg tttccgcatc ggccgcggtg cgcaggaaca tcacgccgtc
     1741 gaggtccgcg ccagggatcg gcagggcgat ggcccgcgcg ccggtggcga tgatcagggc
     1801 gtcgtagctg acggtcgagc cgtcggagag ggtcacggtc ctggcgccac ggttgatcgc
     1861 ggtcgccgtg gtcgaggcgc gaaagtcgat gtcgtgctcg gcgtagaatt cgagcggctt
     1921 cagggccagg gagtcggcgt cggcctcccc cttcagccag gccttggaga ggggcggacg
     1981 ctgatagggc gggatcggct cggagcccac cagcgtgatc ggacccgtaa agccgtactg
     2041 ccgcagcagc gccgccgccg tgccccccgc atggccggcg cccaggatca ccacatgcgc
     2101 ggccaagttg gctgggatcg tatcgctcat ctcaggtctc gatgcccaaa agtgacgctg
     2161 gcgtcaactt aatcgcctct ccctctcgct tcgcggggga gaggcgactc atttccggct
     2221 ggcgatccag tcgtcgacgc tgtgctccag gaccgtcagg gggaccgagc cctcgccgac
     2281 cacgagatcg tcgtaggcct tgatgtcgaa cttgcggccg agttcccgct gggccttggc
     2341 gcgcagttcc atgatcttca gcatgccgat cttgtagccg gtggcctggc ccggaagggt
     2401 gatgtagcgg cggacttccg agcgggcctg gtttggcgga cggcggccgg tcttgatcat
     2461 gtagtcgacg gcctggtcct cggtccaacc cttggcgtgg atcccggtgt cggtgaccag
     2521 gcgcgcggcg cggaacagtt cggcgtccag ccggaagaag tcggaggcga tgtccgggta
     2581 ggcgcccatt tccttgcaga gcgcctcggt gtagagcgcc cagccttcgc cataggccac
     2641 atagcggtag gccgagcgga acttggggat acccttctgg cgcgcctgga tgtcgccctg
     2701 catcacgtgg ccagggatgc cttcgtggca catcaggtcg gtgatgttcg ccgggtcgtc
     2761 ggtgacgccc agcatatgga tatagacccg gcccggccgc gtaccgtcgg ggctcggccc
     2821 ggaagcgtgg gcggcgccgc cggccacctc actgaacgag ggctcgcgga ccacctcggc
     2881 cttgtagacg ggcagggcgc cgaagaaggc gggcagcagg cggcgattgt tgacgaccgc
     2941 ggcgttgtag gcgcgcaggt agtcggcccg gatcgcgtcg gtccacggcg tcggcgggaa
     3001 gagccgcgcg cgttcatcgt aataggcttg gcggtccttg aagccggcgg agcgggcgag
     3061 cgcgtcctgc gccgcctcga tgcgggtcac ttcggagagg cccagcctgt tcacctggtc
     3121 cggggtcagg tctgtggtgg tgttgagctt cagcgccgcg gcgtaccagg ccacgccgtt
     3181 gggcagggtg atggcgccca ccttgcccga gggcgccttg ggcaggtccg cttcggccca
     3241 ggcgatcacc cgctcgtagg gcggcttgag accgagcagg gccgccttgg cgtcatccat
     3301 cagggcctgg gcccgcgccg gggtcagcgc gtcggttgac tgcagcttgc cgatcttggc
     3361 cttgatgtcg gcccacagcg gcgagtccgt ccctcccttc tcgctatttg gggcgtcgaa
     3421 cggggcgccg gtgatcatct ggcggctgcc ggagatcacg cgttcgacct cgaagcgcgg
     3481 cgcacggatg ccgagcgcgt cggactgctg gctctgggcg atggcgatgt cgaacaccgc
     3541 gggcatggcg cgcaggcgcg agacgtaggc ggccatgtcg tcgccgtcgc gcaccacatg
     3601 ggtgttgatc aggaaattcg gcagctccga gtggaccgaa tagaggaagg aatagaaggg
     3661 cggctggtag cggcggaacc tgtagctggt ctccgcgcgg tcgagctcca gcgcccacat
     3721 gtcgtagctg gcctgggccg ccggcggcag cttggcgcgg tcgaagccgg ccttcatccg
     3781 cgcgacgctg gcgcggcgcc attcgagaag cttcagctgg gcggcgtcgc tgatgtcgtc
     3841 cagcttgccc atgtcctgct tgaggccgag ccgcgtggcg agctggggct tcagcgccac
     3901 ttcctgggcg aactccttgt cgaggaaggc ggtgaaacgc gcctcttcgc tctgggccgg
     3961 cgcgctcgcc tgggcctcgg ccgccggcgc cgcgagcagg ctgaggggcg cggttgtgac
     4021 cgcgagcagg aacgccagac cgatcgcgcg catcagacca cgcgatccac gagcatcttc
     4081 ttgacctcgg cgatagcctt ggcggggttg aggcccttgg ggcagacctg ggcgcagttc
     4141 atgatcgtgt ggcagcggta gagcttgaag gggtcttcca gcgcgtcgag ccgctcgccg
     4201 gtggcctcat cgcggctgtc gatcagccag cggtaggatt gcagcagggt ggctggcccc
     4261 aggtacttgt cctggttcca ccagtagctg gggcacgacg tcgtgcagca ggcgcagagg
     4321 atgcactcgt agaggccgtc cagcttctcg cggtcctccg gcgactgcag ccactccttc
     4381 tgcggttccg gcgtctcggt gtgcagccag ggctcgatgg aggcgtactg ggcgtagaac
     4441 tgggtgaggt ccgggaccag atccttcatc accggcatgt gcggcagcgg gctgatctgc
     4501 acgtccttgc cggggacatc ctcccagccg tgggtgcagg ccagcgtatt gcgcccgccg
     4561 atgttcatgg cgcaggaacc gcagacgccc tcgcggcagg agcggcggaa ggccagcgtc
     4621 gggtcgatct cgttcttgat gtagatcagc gcgtccagga ccatcggccc gcaggcctcg
     4681 acgtccacgt cataggtgtc ccagcgcggg ttctccgtcc cctcggggtc gtagcggtag
     4741 acccggaagg tcttgatctt cttggcgcct tcgggggccg ggtggtggcg tcccttggtg
     4801 acgcgggagt tcttcggcag gacgagttcg gccatgggag gtccctaaga ctggtacagt
     4861 tcggcggtct tccgccccag gatgatgacg ccgcggtggc cgtcgtgatt ggtggagacg
     4921 agcttcattt cctcgatgcc agcctggttc agcagacgca caacacgcga cagatcgtag
     4981 tcgtacatat ggatgtggcc cacgggcagg ttgcggatcc agcgctgctg gcgctgtttg
     5041 cggaagaggt tcttgaggaa gccctgctcc tgcggccact ggcgattggc gtcgcgccag
     5101 atcgtcagtt ggatgctgac catccccccg ggcgccaggc gcgccaggag gtccgcgagg
     5161 atcgaaagcc cgcgatcggg cgggatgtgc tggaagacga tgaagctgtt gatccagtcg
     5221 aaggggccgg ccggcagctg gtccacatag gtcaccttgc tgccgcgctt gcgcgccagt
     5281 tcgagcatcc ccggtgagat gtcgaggccg gtgacctcgc tggcgtacgc ggtcatcgcc
     5341 tcggcgagcc gccccacgcc gcagccgaag tccagcgcac ggccggacgg caggtcgccg
     5401 gtcaacgact tcaggccttc ggcgatcggt ccgatgtgga aggggccaga ttcgtagaac
     5461 tgatccacca gggccggggt gatcttgtcg cggcggaagt cggggtggct cagcacgccc
     5521 caatagggct cggtcgcgcc cagctcgcgc cagtcggcgt ccgtatcgcg tcccgccgtg
     5581 gccatgtcat ccgccgccat gcccgcttcc tagtagaccc gggctttcgg cgggatcggg
     5641 gcgatgtcgc tggtcatggt gaagtcgtgc accggccggt agtcgatctt caccttgccc
     5701 gtggcgtcgt cgaaccaggt gagggtgtgc ttcatccagg tcttgtcgtc gcgggcggcg
     5761 aagtcctcgc gggcgtgggc cccgcggctc tcctggcgat tgttggcgcc gaccaccgtg
     5821 accaccgcct ggccgatcag gttgtcgagc tcgagcgtct ccatcaggtc ggtgttccag
     5881 ataaggccgc ggtcggagac ggcgagatcc ttgcgcttct tctgcaccgt ctccatccgc
     5941 ttgacgccgg agatcagaga cttgccggtg cggaagacgg cggcgtcctc ctgcatggcg
     6001 tgctgcatct ccagccggag cgccgcggtg gtggtcttgc ccttggcggt gcggaggcga
     6061 tcgaagcgtg ccagatggcc gtcggtcgta gcgggcttca gctcaacctg cgtcgccccg
     6121 gccttgatcg tgtcggcgca gcgcagcgcc gccgagcggc cgaacaccac caggtcgatc
     6181 agcgagttgg agcccaggcg gttggcgcca tggacgctca cgcaggccgc ctcgcccacc
     6241 gccatcaggc ccggcaccac cttgtcgggg ttgcggccgg ccttggtcac gacctccgag
     6301 tagaagttcg tgggcacgcc gcccatgttg tagtggaccg tcgggagcac cgggattggc
     6361 tccttggtca cgtccacgcc ggcgaagatc cgggcgcttt cggagatgcc gggcaggcgt
     6421 tcgtgcagca ccttggggtc caggtggtcc aggtgcaggt tgatgtggtc cttcttcgga
     6481 ccgacgccgc ggccctcgcg aatctcgatg gtcatggcgc gcgagaccat gtcgcggggc
     6541 gccaggtcct tcacggacgg ggcatagcgc tccatgaacc gctcgccctc ggaattggtg
     6601 agatatccgc cctcgccgcg cgcgccctcg gtgatcaggc agccggcgcc atagatgccg
     6661 gtggggtgga actgcacgaa ctccatgtcc tgcaacggca ggccggcgcg caggaccatg
     6721 ccgttgccgt cgccggtgca tgtgtgggcc gaggtgcagg agaagtaggc ccggccatag
     6781 ccgccggtgg ccaggatcac ctgctgggcc tggaagcggt gcagcgtgcc gtcgtcgagc
     6841 ttccaggcgg tgacgccgcg gcagacgccc tcatccatga tcaggtcgag ggcgaagaac
     6901 tcgatgaaga actcggtctt cttggccagc gcctggccgt acatggtgtg cagcatggcg
     6961 tggccggtgc ggtcggcggc ggcgcaggtg cgctggatcg gcgcctcgcc gaagttgcgg
     7021 gtcatgccac cgaaggcccg ctgatagatc ttgccctcgg gcgtgcgcga gaacggcacc
     7081 ccccaatgct ccagctcgta gaccgcggcg ggcgcattgc ggaccaggta ttcgatggcg
     7141 tcctggtcgc ccagccagtc cgaccccttg acggtgtcgt acatgtgcca gcgccagtca
     7201 tcctcgctca tgttgcccaa agaggccgaa atgccccctt gagctgcaac cgtgtgggag
     7261 cgcgtgggaa agaccttgga gatgcaggcg gtcttcagcc ccgccgcggc gcagcccagc
     7321 gccgcccgca ggcccgaccc gccggcgccc accaccacca cgtcgtattt gtgctcgatg
     7381 aattcgtagg tcgccatggc tcagacggct ccgccgctca gggcgacctt gaggatcgcg
     7441 aagatcgcca gcgcgcccgc aagcccgcag atgaagaggt tggccaacag cagcaccgac
     7501 ttggtgaggg tcttgtggat gtagtcctcg accacgacgc ggacgccgga gtgcatgtgc
     7561 cagaagctga tagcgaaggt cagcaccgtg agcgtggcgt tcagcgggtc ctgcacccag
     7621 tggaccgcga aaccgtagtc gccggcggag agtctgagga tcccgtagac catccagatc
     7681 accagcggga cgagcgcgat ggcgctgacc cgctcggaaa gccagtggcc ggcgccgtgc
     7741 ttggccgagc ccaggccccg agcgcggccg agcggggtgc gataactgac catcagagcg
     7801 ctcccgtcat gctggcgagg ccccagatcg ccagggtggc ggccgcggcg aaggcgaaga
     7861 ccacgacggc ggaggcattg gccgacttca cgtcgaggcc ccggccggtg tcccagacca
     7921 ggtgccgcac gccgttggcc aggtggtaga agacgcagac cgtcaggccc agcatcacca
     7981 ccttgcccgg ccacgagccc agcagctcct tgaactgggc gtagcgctcc ggtcccgcag
     8041 ccagcgcgat ggcccaagcc gcagcgatca ggcccccgac atagagcgcg cagccggtgg
     8101 cccggtgcag gatcgaggtc cacatggtga tgtgccaccg ccagagcagc ggcgagccca
     8161 atccaccggt caccaggtgc ggcgaggtcg gcggttcccg gcgtgtcttg ctggcgtctg
     8221 tcatggctct cgcgccgccc ccgtccctgt cccgaagtgc ttcgctttta agcgccgctg
     8281 agggggtgtc aacgcgccgc gccaatcggc cggaccgagc cgcgaggggc ggcgaaatag
     8341 ggcccgatcg gccgcacgac ccggcgcacc gtcatgtcct ggtccgcgat gcccagagac
     8401 tggcgatagc gggtgagatc gtcggccgcc tcggcggtga ccaggctcca catccggtcc
     8461 tcggtgatca ccccgccgat ccagaaggcg cccacgtcgc ggtaggcgtc caccgcccag
     8521 cgggcgtgca aggcgacttg ttcggggtcc tccgcatgga aggccgccgg gatcgtccgc
     8581 tccacgagga aagtgttcat cgcgccacgt ctccttcgga ttggaagaag catctcggca
     8641 aatcccggct gacacaatgc gcagttcctg tagtcttcct tcgcgaaagg cgaaggatgc
     8701 gtttcgatct gaccgacctg agattgttct gcgaggtggt cgacgccggc tcgatcaccg
     8761 ccggcgcgga gaagagcgcg ctcgccctgg ccgcggcctc gacccgcatc cggggcatgg
     8821 aggaggcgct gggcgcgccg ctgctgatcc gctcgcgcca gggggtcacg cccaccgaag
     8881 ccggccgcac cctgctgcgc cacgcgcgga ccctactggc ccagagcgcg cggctccggg
     8941 aggacctcag cgcctacgcc ggcgggatgt ccggcgaggt gcggctgctg gccaacacca
     9001 atgcgctcac cgaattcctg cccgaggcgc tgtcggcctt cctcgccgac cacccgcagg
     9061 tcagcgtcga cctggaggag aagctgtcgg acgagatcgt cggcctggtc gccgagggcg
     9121 tcgccgacgt gggcatcgtg gccggcacgg tcgatgtggg ggcgctgacc acctatccgt
     9181 tccgctccga ccgcttcgtg gtggtgacgg cggtcggcca tccgctcgcc cggcacgaaa
     9241 gcgtccattt cgcccaggcg ctggactacg acttcgtggg cctcgaccgc gcggcctcgc
     9301 tgcagcggtt cctggccggc aaggcggcgc gcgagggccg gccgctgcgc ctgcgggtcc
     9361 agctgcgcag cttcgacgcg gtctgtcggc tggtggagtg cggcgtgggc gttggcgtcg
     9421 tgccgcagac caccgcggcg cgggcggcca agaccatggc gctggcggtc accgacctcg
     9481 ccgacgactg ggcgctgcgc gaactgacca tcgtggtccg cgccggggac gagctgcgtc
     9541 cctacgccaa ggcgctggtg gagagcctgc gcagctagct agaacgccct aagaagctcc
     9601 cgggggaagc ccatgaacca gaccgaaatc gccgtcacgc tgctgagttt catctatgtg
     9661 gtggcgctga ctcacgtcct gcagtgcttc cgcgacttgt ggatcacccg cgagcgggtc
     9721 ctgccctcgg cttcgctgct ggcgtggatg acggcgatgc tgcttttcgc catcgtcacc
     9781 tggtttcccc tggccagcgc caacggcgtc gtcctgtcgg gatggcgcct gggcgcgcgg
     9841 ctgctgttcg cgatcggcgt ctacttctgc tgcgccttcg tctcgccctc cgtccccgat
     9901 gagggggtgc tggacctgaa gaactacgag agccgcaacg gcgccggctt caagttgacg
     9961 ttcctggcct tggcggccct gtcgattcca atgaactccg acctgcacaa acccgggggt
    10021 ctgccggccg tcgaggtccc ggcctttctg ctgagccagt ggttcgtcgc agtgtcggcg
    10081 ctgatcaccc ttctcagcct ctggcgccgg gagcgctggg ttcggacaat ctgcgggcta
    10141 agcctcgcga cgctgaacgg ctgggtcctg ctgcgcaaca tgggcctgct gcccggctga
    10201 cccgcgctag gccggctcct caagccagtc ggcggagcgc atctcctcga gccgcgaggc
    10261 cgtgcgttcg aattcgaagc tgccgtctcc ggccgggtaa agctcggcgg gctgggcttc
    10321 ggcgagcacg atcagccggg tttgggcctc gtaaagggcg tcgatcagga tcaccagacg
    10381 ccgcgcctct tcccggcggg cgggcgtgag cttcgggaca tcatcgagga aaacggtgtg
    10441 gaagtggtcg gccagcgcca catagtcgtt gggaccgagc gccacggaac agaggctcgt
    10501 gaaggtcgcg cgcaccaggc cgcctgaggc gtggggcagc atgatcttgc ggcccaggac
    10561 ctcgagcgtc gcgcccgact cctcctccgg ccccagcatg tcgcgccaca gcgcctcgaa
    10621 gctgtggcga ttgtgcggat cgaccggcga gaaccaggtc ccggccgcgc gcaggcggtc
    10681 caggcgatag tcgtggtggc ctgcgacgct caccacctcc agccgtgact tgaggaggtc
    10741 gatgaagggc acgaacagct ggcggttgag gccgtccttg tagagtgcgt ccggcgcgcg
    10801 gttggaggtg gcgaccagcg tcacgccgcg cgcgaacagc gcctcgaaca gccggcccag
    10861 gatcatggcg tcggcgatgt cggtgacctg gaactcgtcg aagcagagca ggcgcgcggt
    10921 ctccgctacc acgtcggcca ccggcacgat cgggtcatcg cccttatgct ggccgaaacg
    10981 ggccttgcgg gcggccgcgt cgctggtgcg ccagatcccg atcagccggt ggatttcgcc
    11041 catgaagacg tggaagtggg tgcggcgctt attctcgacg gggaccgcct cgaagaagag
    11101 gtccatcagc atcgacttgc cacgcc
//
LOCUS       DATAJL010000573         2097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_9834,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000573 DATAJL010000000
VERSION     DATAJL010000573.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9834"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(19..1134)
                     /gene="mraY"
                     /locus_tag="VHN39_11000"
     CDS             complement(19..1134)
                     /gene="mraY"
                     /locus_tag="VHN39_11000"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEX2816917.1"
                     /translation="MFYWLYEHFSAGGHGHVPILNLIRYLTFRTAMSIFTAQIIVVAM
                     GSRFIRWMQAKQGKGQPIRAEGIQRHIVEKAGTPTMGGVMILAGLIIGTLLWADLSNV
                     YIWAVLLVTSGYGLLGFLDDYSKVTKQTTDGISGKMRLLLEALIAMAAISLIILFAAK
                     PPATPDLLTSVTFPLFKGAMLNLNWFYLLFGAFVIVGGANAVNFTDGLDGLATVPAMI
                     AASAYGLIAYLVGNFVFANYLQLHFVPGVGEIAIYCGAMIGAGLGFLWYNAPPARIFM
                     GDTGALALGGGIGAVAVATRQEIVLGVIGGLFVAETLSVVIQVAWFKRTGRRVFLMAP
                     IHHHFERLGWSEPTVVIRFWIVAIMLAMLGLATLKLR"
     gene            complement(1134..>2097)
                     /locus_tag="VHN39_11005"
     CDS             complement(1134..>2097)
                     /locus_tag="VHN39_11005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HEX2816918.1"
                     /translation="ARMPRDTERAVFEVGMNHAEEIRPLTRMVRPHAAVVTTVGPVHT
                     ENFPDGEAGVAHAKAEVFEGLLPGGVALLNADDRWFGLMKTEAEKAGAEVRTFGRAEG
                     CDARLIDFQGADGHAVVQARLHGKGLDFPILQTGFHWGLNSMAVLLMLEALDVDLGDS
                     LAALGSFEPLEGRGAERDVRLAKGGFTLIDESYNANPISMASAIATLGARAATGRKIV
                     ALTDMLELGGEARSFHAALAEPLADAKVDLVFAAGPLMKSLWDALPSTRRGGYAETAA
                     ELAPQVARAAEPGDVVMVKGSNGSKAGLIAQALGQLDVRPGEAS"
BASE COUNT          362 a          704 c          726 g          305 t
ORIGIN      
        1 atctggacgt cgacccctct accgaagctt cagggtcgcg aggcccaaca tggccagcat
       61 gatggcgacg atccagaagc ggatcaccac ggtcggctcc gaccagccga ggcgctcgaa
      121 gtggtggtgg atcggcgcca tcaggaagac gcggcggccg gtgcgcttga accaggccac
      181 ctggatcacg accgacaggg tctctgccac gaagaggccg ccgatgacgc ccagcacgat
      241 ctcctgccgc gtcgccacgg ccaccgcgcc gatgccgccg ccgagcgcca gagcgcccgt
      301 gtcgcccatg aagatccggg ccggcggggc gttgtaccag aggaagccca ggccggcgcc
      361 gatcatggct ccgcagtaga tggcgatctc gccgacgccc ggcacgaagt ggagctgcag
      421 gtagttggcg aagacgaagt tgccgaccag ataggcgatc aggccatagg ccgaggccgc
      481 gatcatcgcg ggcacagtcg ccagaccgtc gaggccgtcg gtgaaattca ccgcattggc
      541 gccgccgacg atcacaaagg ccccgaacag caggtagaac cagttgaggt tcagcatggc
      601 gcccttgaac agcgggaagg tcaccgaggt caaaaggtcc ggcgtcgcgg gcggcttggc
      661 ggcgaacagg atgatcaggc tgatggccgc catggcgatc aacgcctcga gcagcagccg
      721 catcttgccc gagatgccgt cggtggtctg tttggtgacc ttggaatagt cgtcgaggaa
      781 gcccagcagg ccgtagcctg aggtcaccag cagcaccgcc cagatgtaga cgttggagag
      841 gtccgcccag agcagggtgc cgatgatcag cccggccagg atcatcaccc cgcccatggt
      901 cggcgtgccg gccttttcga cgatgtggcg ctggatgccc tcggcgcgga tcggctggcc
      961 cttgccctgc ttggcctgca tccagcggat gaagcgcgag cccatggcga ccacaatgat
     1021 ctgggccgtg aagatcgaca tggcggtgcg gaaggtcagg tagcggatca ggttgaggat
     1081 cgggacgtgg ccgtggccgc cggccgagaa atgctcatag agccagtaga acatcagctg
     1141 gcctcccctg gccggacatc gagctgaccc agggcctggg cgatcagccc cgccttcgat
     1201 ccgttcgagc ccttcaccat caccacatcg ccgggctctg cggcccgggc gacctgcggc
     1261 gccaattccg ccgctgtctc ggcgtagccg ccgcgccgag tcgacggaag ggcgtcccag
     1321 agggatttca tcaaaggtcc ggcggcgaac accagatcga ccttggcgtc ggccaggggc
     1381 tcggccagcg cggcgtggaa gctgcgggcc tcgccaccca gctccagcat gtcggtgagc
     1441 gcaacgatct tgcggccggt cgcggctcgg gcgcccaggg tggcgatggc cgacgccata
     1501 gagatcgggt tggcgttgta gctctcgtcg atcagcgtga agccgccctt ggccaggcgg
     1561 acgtcccgct cggcgccgcg gccctccaac ggctcgaagg acccgagcgc ggccagactg
     1621 tcgccgaggt ccacgtcgag agcctccagc atcagcagca cggccatgga attgaggccc
     1681 cagtggaagc cggtctgcag gatcgggaag tccaggccct tgccgtgcag gcgcgcctgg
     1741 accaccgcgt ggccatccgc cccctggaag tcgatcaggc gggcgtcgca gccctcggcg
     1801 cggccgaagg tgcggacctc ggctccggcc ttctcagcct ccgtcttcat caggccgaac
     1861 cagcggtcgt cggcgttcag cagggctacg ccgccgggca gcaggccctc gaacacctcg
     1921 gccttggcgt gggccacgcc ggcctcaccg tcagggaagt tctcggtgtg gacgggcccc
     1981 acggtggtca ccaccgcggc gtgcggccgg accatgcggg tcagcggccg gatttcctcg
     2041 gcgtggttca tgccgacttc gaagaccgcg cgctccgtat cgcggggcat gcgggcc
//
LOCUS       DATAJL010000574         5754 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35867,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000574 DATAJL010000000
VERSION     DATAJL010000574.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5754
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35867"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            316..1656
                     /locus_tag="VHN39_11010"
     CDS             316..1656
                     /locus_tag="VHN39_11010"
                     /inference="COORDINATES: protein motif:HMM:NF016232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HEX2816919.1"
                     /translation="MSEPLASQLESLIVNPREDLAIEIKSWLDLSSPAHCATLAKAAL
                     AIANHGGGFIVVGLRETSDGQFEPDPNRPPSLTAYSQDALARIVAAYSEPPFQVAVHH
                     VAVASGTYPVMQVPGGHRTPIQAKKGSSDNKTLIVGRVYIRRPGPESAEPASAAEWRG
                     LLDRCLRAARDDLLDAIRGTLDGQNLAAAAPPPPSERDRFIVFAADGLKRWSEKAPIT
                     PTQVRLYPPGYYRVAYRVVGPIAPRSPADLLTAISRATTGHTGWSPWWVPTRDEIKPY
                     WNEGALECFLGEGRMVEDPAHADFWRVSPDGNAVLVRGFDEDSHPDRVKPGTVFDVTL
                     PVWRIGDCMLQAARFAEAIGAPQSEIIFGVQWMGLAGRELTHIEGHRHISPGRAAKQD
                     RLDLEATLRADQIAERLPEILFDFLTPLYALFDLFVLPKSLVDQEVQKLRAGRF"
     gene            complement(1681..1765)
                     /locus_tag="VHN39_11015"
     tRNA            complement(1681..1765)
                     /locus_tag="VHN39_11015"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1729..1731),aa:Leu,seq:caa)
     gene            1941..2273
                     /locus_tag="VHN39_11020"
     CDS             1941..2273
                     /locus_tag="VHN39_11020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046914 - transition metal ion binding
                     [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0055072 - obsolete iron ion homeostasis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FeoA family protein"
                     /protein_id="HEX2816920.1"
                     /translation="MLSQPAKVEPAQAGVDGAVRLSQARPGDCGVIVDVRAERHAGDH
                     GVDVGELQRRLLEFGFVEGAQIEVLHEGAIWRDPIAVRVDDMRIGLRRRDAEDVWVLL
                     DTAPALPR"
     gene            2291..4159
                     /locus_tag="VHN39_11025"
     CDS             2291..4159
                     /locus_tag="VHN39_11025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HEX2816921.1"
                     /translation="MAPLASARVALVGNPNSGKTALFNALTGSRQKVANYAGVTVERK
                     EGQIAAPSGRSLSILDLPGTYSLRARSPDEVVTRDAVLGKLVGEDPPDVLVCVADATN
                     LRLVLRLILELKAVGRPMVLALNMYDIAQRQGLRIDLEGLARDIGCPIVTTVATRKRG
                     IEDLVDQVDSLIAAGALGGANTWREPDAGQIRDAHREAQRILKANVRAPERPDTFTGK
                     VDSLLLHPVAGLAILLTLLFVMFQAVFTWSKAVGDLMSDGFARLGAFISAHLPPGLLT
                     SFLSDGVISGVGSVLVFLPQILVLFFFIILLEDFGYMARAAFLMDRIMGGAGLHGRAF
                     IPLLSSFACAIPGIMATRVIDNKRDRLTTIMVAPLMTCSARIPVYTLIISAFIPNRPV
                     LGVLNLPGLVMFGLYAAGILSALGVSFITRKVFWRGAVEPFLMELPAYKLPDPVNVLR
                     SLLLRGKIFVTRAGTIIFPIMILVWFLSSFPGAPAGATDPAINYSLAGRIGHFIQPAL
                     APIGFNWQMTVALIPGFAAREVAVAALGTVYAIGNADAAPGALAATLQHHWSIATGLA
                     FLAWYVFAPQCASTFGVVKRETNSWLWPAVMLVYMTGLAYVAAFIVYQVARASGLG"
     gene            4266..4574
                     /locus_tag="VHN39_11030"
     CDS             4266..4574
                     /locus_tag="VHN39_11030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816922.1"
                     /translation="MNTSEATPGKKPARGTQTLAKRVREALLSLGGEAHRVTVIETVA
                     KKLGHDTRQIPEELQAALICSFEENWRDERRRATYGFHLPFGEGSYRWGVVREPTFAN
                     "
     gene            complement(4571..5062)
                     /locus_tag="VHN39_11035"
     CDS             complement(4571..5062)
                     /locus_tag="VHN39_11035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HEX2816923.1"
                     /translation="MTPDGDAGRTGDAELRLDAYLPYRLSVASNAVSGLIARSYQDRF
                     GLSVPQWRVICVLAEDGGLTQGQIVARTVMDKVTVSRAAQDLLKRHLVGRSDHQADGR
                     SHVLALTPEGSGLHAEIAPLALAYEAALIAGLGPDEVALLKRLLARLQAAAGQLAGDA
                     GPG"
     gene            complement(5059..>5754)
                     /locus_tag="VHN39_11040"
     CDS             complement(5059..>5754)
                     /locus_tag="VHN39_11040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX2816924.1"
                     /translation="SFWTDPLMYQGGSDKFLGPRDPIPLADPAWGLDMEGEVAVITGD
                     VPQGATREQALGAIRLVLLCNDVSLRNLIPGELAKSFGFFQSKPASAFSPVAVTPDDL
                     PGWKDGKLAGALSVELNGKPLGEADAAVDMTFDFGTLIAHAAKTRSLSAGSIIGSGTV
                     SNRGPDGGPGKPVAEGGVGYSCLAEIRTIETITSGAPKTPFLAVGDTVRIEMRDAKRH
                     SIFGAIEQVVAAA"
BASE COUNT          910 a         1998 c         1874 g          972 t
ORIGIN      
        1 ccgcagactt tggacaaatc aatgtttttg tccgaaaaaa gccgtgaatt tcggacaaac
       61 accaatttgg cgacgctcgc aaattccttc gcgctcgccg aaaatgtgct gtgtcgtggc
      121 cgcctccaag tcaggcatgc cgtcgtaaag cagggcttgt agagcatgcc aggcccttcc
      181 caggcccggt cttgcctagc tggagtcggc aaagcgatcg aacgccatcc aggtcgactt
      241 acccactcgc gggcctatgg tggagcttgt cgacgcatct tggttcccct cgccaagcgc
      301 ctccaaggtc atgccatgtc tgagccgctg gcctcccaac tcgaaagcct gatcgtcaat
      361 ccgcgggagg atctggcgat cgagatcaag tcgtggctcg atctgtcctc ccccgcccat
      421 tgcgccacgc tcgccaaggc cgccctcgcc atcgcgaacc acggcggcgg cttcatcgtt
      481 gttggtctcc gcgagacatc agacgggcag ttcgaaccag atcccaatcg gccgccgtct
      541 ctcacagcct attcgcagga cgccctggcc cgcattgtcg ccgcctattc cgaaccgccc
      601 ttccaggtcg ccgtccacca cgtcgccgtc gcatcgggga cataccctgt catgcaggtc
      661 ccgggcggcc atcggacacc gatccaagcc aagaagggaa gctctgacaa caagaccctg
      721 atcgtcggtc gcgtttacat tcggcgcccc ggacctgaga gcgccgaacc ggccagcgcg
      781 gctgagtggc gcggactgct cgaccgttgt ctccgcgcgg cgcgagacga ccttctcgac
      841 gctatacgcg gcaccctgga cggacagaac ctcgccgccg cggcccctcc gccaccgagc
      901 gagcgcgacc ggttcatcgt cttcgcggcg gacggcctga agcgatggtc ggagaaggcg
      961 cccatcacgc ccacccaggt ccgcctctat ccgcccggct actaccgggt cgcctatcgc
     1021 gtggtggggc ccatcgcacc gcgctcaccc gctgaccttc tgactgccat cagccgtgcc
     1081 accaccggac atacaggctg gtccccctgg tgggttccga cgcgcgacga gatcaaaccc
     1141 tattggaacg agggcgccct cgagtgcttc ctcggggagg ggcggatggt cgaagacccc
     1201 gcccacgcag acttttggcg agtcagccct gacgggaatg ccgttttggt gcgcggcttc
     1261 gacgaagaca gccaccccga ccgcgtcaag cccgggaccg tgttcgacgt gaccctgccg
     1321 gtctggcgca tcggggactg catgttgcag gccgcgcggt tcgccgaagc gatcggcgcg
     1381 ccacagtctg agatcatctt cggggtgcaa tggatgggcc tggctgggcg cgagcttaca
     1441 cacatcgaag gccatcgaca catctctccg ggccgcgccg ccaaacagga caggctggac
     1501 ctcgaagcca ctctcagggc cgaccagatc gccgaacgcc tgccggaaat cctgttcgac
     1561 ttcctgacac cgctctacgc gctgttcgat ctcttcgtgt tgcccaaatc cctggtcgac
     1621 caggaggtcc agaagctcag ggccggccga ttttagctga cgctgtgggg cgctctgacg
     1681 tggtgcccga ggtcgggctc gaaccgacac accttgcggt actggatttt gaatccagcg
     1741 cgtctaccaa ttccaccact cgggcactgg cgcccctata gccgggctgt cgggcttcgc
     1801 caactcgcag gcggcgggct tgcgatgcgt caatgtgcgg ccctcccaaa tgggttcaga
     1861 gcttgtaaat cgacttctgc gaacgtaagt gataatcaat cgcaactaat cggccgatgg
     1921 accccgatcc cgtgcacgac atgctctccc agcccgcgaa ggtcgagccc gcccaggcgg
     1981 gtgtcgacgg cgctgtgcgg ttgagccaag cccggcccgg tgactgcggc gtcatcgtcg
     2041 atgtgcgcgc cgagcgccac gcgggcgacc acggcgtgga tgtgggcgaa ctgcagcgcc
     2101 ggctgctgga attcggcttc gtcgagggcg cacagatcga ggtgctgcac gagggcgcga
     2161 tctggcgcga tccgattgcg gtgcgggtcg acgacatgcg catcggcctt cgccggcgcg
     2221 acgccgagga tgtctgggtc ctgctggaca ccgcccccgc cttgccaagg tgagcgacgc
     2281 cgccctgccg atggcgcccc tggcaagcgc aagggtcgcc ctggtcggca atcccaactc
     2341 cggcaagacc gcactgttca acgccttgac cggcagccgc cagaaggtcg ccaactacgc
     2401 aggcgtcacc gtcgagcgga aggaaggcca gatcgccgcg ccgagcggcc ggtcgctgtc
     2461 tatcctcgac ctgccgggca cctattccct gcgcgcgcgt agccccgacg aggtggtcac
     2521 ccgcgacgcg gtgctcggaa agctcgtggg cgaagacccg ccggacgtgc tggtctgtgt
     2581 ggccgacgcc accaacctgc ggctggtgct gcggctgatc ctggagctga aggcggtagg
     2641 ccggccgatg gtgctggcgc tcaacatgta cgacatcgcc cagcgccagg gcctgcggat
     2701 cgacctggag ggcctggccc gagacatcgg ctgtccgatc gtcaccacgg tggccacccg
     2761 aaagcgcggc atcgaggacc tggtggacca ggtggacagc ctgatcgcgg ccggggcgct
     2821 aggcggcgcc aacacctggc gcgagccgga cgccggccag atccgcgacg cccaccgcga
     2881 ggcccagcgc atcctgaagg ccaatgtccg cgccccggaa cggcccgaca cattcaccgg
     2941 caaggtggac tctctgctgc tgcatccggt ggcgggcctc gccatcctgc tcaccctgct
     3001 gttcgtgatg ttccaggcgg tgttcacctg gtccaaggct gtcggcgacc tgatgagcga
     3061 cgggtttgcc aggctgggcg ccttcatctc ggcgcacctg ccgcccggcc tgctgaccag
     3121 tttcctgtcc gacggagtga tctccggcgt cggctcggtg ctggtcttcc tgccgcagat
     3181 cctggtgctg ttcttcttca tcatcctgct cgaggacttc gggtacatgg cgcgcgcggc
     3241 cttcctgatg gaccggatca tgggcggggc gggcctgcac gggcgcgcct tcatcccgct
     3301 cttgtcgagc ttcgcctgcg cgatcccggg gatcatggcg acgcgggtga tcgacaacaa
     3361 acgcgaccgg ctgaccacca tcatggtggc gcccctgatg acctgctcgg cgcgaatccc
     3421 ggtctacacc ctgatcatct cggccttcat cccgaaccgg ccggtgctgg gcgtgctgaa
     3481 cctgccgggg ctggtgatgt tcggtctcta tgcggcgggc atattgagcg cgcttggcgt
     3541 ctccttcatc acccgcaagg tgttctggcg cggcgccgtg gagccgttcc tgatggagct
     3601 gcccgcctac aagctgccgg acccggtgaa cgtgctgcgc agcctcctgt tgcgcggcaa
     3661 gatttttgtg acgcgggccg gcacgatcat cttcccgatc atgatcctgg tctggttcct
     3721 gtcgtcgttc cccggcgcgc ccgccggcgc gacggacccg gcgatcaact acagcctggc
     3781 cggccgcatc ggccacttca tccagcccgc gctcgccccc atcggcttca actggcagat
     3841 gaccgtggcc ctgatcccgg gcttcgcggc ccgcgaggtc gcggtggcgg cgctcggcac
     3901 cgtctacgcc atcggcaatg cggacgccgc gcccggtgcg ctcgccgcca ccctgcagca
     3961 ccactggtcg atcgccacgg gcctggcgtt cctggcctgg tacgtcttcg ccccgcagtg
     4021 cgcgtccacc ttcggggtgg tcaagcggga gaccaattcc tggctctggc cggcggtgat
     4081 gctggtctac atgacgggcc tggcctatgt ggccgccttc atcgtctacc aggtcgcccg
     4141 cgcctccgga ttgggctgag ccgggctaaa cccaaggctg cgtttttacc aagaattcaa
     4201 cctggtcttt aaccgggcgc taaacgagcc gggcgcaggg ttgctccagg atggagaaaa
     4261 cgcctgtgaa cacctccgaa gccacccccg gcaaaaagcc ggcgcgcggg acccagaccc
     4321 tcgccaagcg ggtccgtgag gccctgctgt cgcttggcgg cgaagcccac cgcgtgacgg
     4381 tgatcgaaac cgtggccaag aagctcggcc atgacacccg ccagatcccc gaggaactgc
     4441 aggcggccct gatctgctcc ttcgaggaga actggcgcga cgagcgccgg cgcgcgacct
     4501 acggcttcca tctgccgttc ggcgaaggct cctaccgctg gggcgtggtc cgggaaccga
     4561 ccttcgccaa ctagcctggt ccggcgtcgc cggccaactg tcccgccgcc gcctgcaggc
     4621 gcgccagcag acgcttgagc agggccacct catccgggcc gagccccgcg atcagagccg
     4681 cctcgtaggc cagcgccagg ggcgcgattt ccgcatgcag accggaccct tccggggtca
     4741 gggccaggac gtggcttcgc ccgtcggcct gatggtcgga gcggcctacc agatggcgct
     4801 tcaggaggtc ctgggccgcg cggctcaccg tcaccttgtc catcaccgtg cgcgcgacga
     4861 tctggccctg ggtcaggccg ccatcctcgg cgagcacaca gatcacccgc cactgcggga
     4921 cggaaaggcc gaagcggtcc tggtaggatc gggcgatcaa gccggagacg gcgttggagg
     4981 cgaccgacag gcgatagggc aggtaggcgt cgagccgaag ctcggcgtcc cccgttcgcc
     5041 cagcgtcgcc atccggggtc atgcggcggc caccacctgt tcgatggcgc cgaagatcga
     5101 gtggcgcttg gcgtcgcgca tctcgatgcg gaccgtgtca cccaccgcca ggaatggcgt
     5161 cttgggtgcg ccggacgtga tggtttcgat ggtgcgaatc tccgccaggc acgagtagcc
     5221 gacgccgccc tcggccaccg gcttgccggg cccgccgtcg gggccgcggt tggagaccgt
     5281 gcctgagcct atgatggagc cggccgacag gctgcgggtc ttggcggcgt gcgcgatcag
     5341 ggtcccgaag tcgaaggtca tgtcgacggc cgcatccgct tcgcccagcg gcttgccgtt
     5401 cagttcgacg gaaagcgcgc cggccagctt gccgtctttc catccgggca ggtcgtccgg
     5461 ggtcaccgcc accggcgaga aggccgacgc gggcttcgac tggaagaagc cgaagctctt
     5521 ggcgagctct ccggggatca ggttgcgcag ggagacgtcg ttgcagagca gcaccaggcg
     5581 gatggcgccc agcgcttgct cgcgggtcgc gccctgcggc acgtcgccgg tgatcaccgc
     5641 gacctcgccc tccatgtcga ggccccaggc ggggtcggcg agggggatgg gatcgcgggg
     5701 gcccaggaat ttgtcggagc ccccctggta catcagggga tcggtccaga agct
//
LOCUS       DATAJL010000575         1646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_35969,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000575 DATAJL010000000
VERSION     DATAJL010000575.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35969"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1357
                     /locus_tag="VHN39_11045"
     CDS             <1..1357
                     /locus_tag="VHN39_11045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX2816925.1"
                     /translation="VAADYLALASDRSLLKIAADTVVSGAVQPVVGWRDFFSDPKLKA
                     VIDEALANNRDLRAAVANIAAARAQYQVQRANLYPHLSAQAGATFGQEPESVVTGGTG
                     GGEFTEHQYNVGVGVSAYELDLFGKLRNLSRAAQDQYFSTRQARDAAQITLVSQVAAD
                     YLALASDRSLLKIAADTVVSGGQTLDLTRARFEAGVASGLDVAQARTIVEQARFDVAR
                     LTTQVAQDRNALELVVGAPVGDDLLPAAIGAPVVVLSRLPAGLTSAVLLRRPDVLQAE
                     EQLEGANANIGAARAAFFPSITLTGSGGLISTALSSLFTAGAATWSFVPAISQPIFDA
                     GANRGNLALAKAQRDLAIDTYEKSVQTAFREVADALAQRGTIDTQLAAQRGLVDAAQV
                     SMNLADARYQRGADTFLNALIAQRSYYAAQQTLVATQQTEATNLVTLYTALGGGLDAA
                     P"
BASE COUNT          255 a          633 c          522 g          236 t
ORIGIN      
        1 ggtcgccgcc gactacctcg ccctggcctc cgaccgctcc ctgctgaaga tcgccgccga
       61 tacggtggtc agcggcgcgg tgcagccggt ggtgggctgg cgggacttct tctccgatcc
      121 caagctcaag gcggtgatcg atgaggccct ggccaacaac cgcgatctgc gcgccgccgt
      181 ggccaacatc gccgcggcgc gggcgcagta ccaggtccag cgcgccaacc tctatccgca
      241 cctcagcgcc caggcgggcg ccaccttcgg ccaggagccg gaaagcgtcg tcaccggcgg
      301 gaccggcggg ggcgagttca ccgagcacca gtacaacgtg ggcgtcggcg tcagcgccta
      361 tgagctcgac ctgttcggca agctgcgcaa cctctccagg gccgcccagg accagtactt
      421 ctccaccagg caggcgcgcg acgccgccca gatcaccctg gtgagccagg tcgccgccga
      481 ctacctggcc ctggcctccg accgctccct gctgaagatc gccgccgata cggtggtcag
      541 cggcggccag accctggacc tcacccgcgc ccgcttcgaa gccggggtcg cctctgggct
      601 cgatgtcgcc caggcgcgga ccatcgtcga acaggcccgc ttcgatgtgg cgcgcctgac
      661 cacccaggtg gcccaggacc gcaacgccct ggagttggtg gtgggagcgc cggtgggtga
      721 cgatcttctt cccgccgcca tcggcgcgcc ggtggtggtg ctctcgcgcc tgccggcggg
      781 tctcacctcg gcggtgctgc tgcgccgtcc cgacgtcctc caggccgaag agcagctcga
      841 gggcgccaac gccaacatcg gcgcggcgcg ggccgccttc ttcccctcca tcaccctcac
      901 cggatcgggg ggcctgatca gcacggcgct ttccagcctg ttcacggccg gggcggcgac
      961 ctggagcttc gtcccggcca tctcccagcc gatcttcgac gccggggcca accgcggcaa
     1021 tctggccctg gccaaggccc agcgggacct cgccatcgac acttacgaaa agtccgtcca
     1081 gaccgccttt cgcgaagtcg ccgacgccct ggcccagcgc ggcaccatcg acacccaact
     1141 ggccgcccag cgggggctgg tcgacgccgc ccaggtctcc atgaacctgg ccgacgcccg
     1201 ctaccagcgc ggcgccgaca ccttcctcaa cgccctgatc gcccagagat cctactacgc
     1261 cgcccagcag accctggtcg ccacccagca gaccgaagcc accaacctgg tcaccctcta
     1321 caccgcactc ggcggcggac tcgacgccgc gccgtaggag atcgcccgcc gggcaggatc
     1381 aattccttcc acgccccctt ttcgcactgc aacttccctc atccaggcct tcggccggac
     1441 ttcccccatg aatgggggaa aagagggttc gttgtggccg cgctctcctc ccccaagaat
     1501 tgggggaggg ggaccgcgaa gcggtggagg gggaagtggc aagagcgcgc tccggccact
     1561 ttctggaccg gccggcaagg tcgtgagcac cgtgacgccg caggggtgaa gcgacgccgc
     1621 gacagcccta ccgatcgatc ttggtc
//
LOCUS       DATAJL010000576         2271 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_22676,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000576 DATAJL010000000
VERSION     DATAJL010000576.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2271)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2271)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22676"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2271)
                     /locus_tag="VHN39_11050"
     CDS             complement(<1..>2271)
                     /locus_tag="VHN39_11050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816926.1"
                     /translation="IQLQTNGQVFGQPFVRPPANGNGNGAGNGNGNGFGNGGQALAHG
                     AGSPVPAPGALLHSAVDSTQTSNITAGRDISLVATETIALGAAQASGNLTTNSSALQA
                     NTLAAGRNLTLATESGDLNVGSLRHGGNGSLTSTGAIQIDNLTLTGGGATVVSAASDL
                     GIGGGSAAGGTIKLSAGGDVTVNMSSANFDNVTAGGSANMQGGSLTIGTVSAQQVLAQ
                     GGSVTVTSATSAGDVSISASGGSATVGTATAGGDIHIQANGGTASLTKAVITGSGVIS
                     VQSSDGDALLGLGTGSVSGATKVSVQAGQDAVVDLPSALPGALSVSAGRDATLKAPTV
                     VFDAVQAGRDITLTGTVGDLTSTHNLVATRNITIGAAGALKLADITASSGSITLTGAS
                     VTAGALNAGQDLTLKALSGGVTLTSFKAGRDLVVQAATLSLGQQLAPVGRDFTITTPN
                     DFTAASDIAAGRNLTLNIGGVASLKGVTAPGTVDIIANDLTLAGTMTAANVQVESATG
                     ALRVGGSSADGAPASGLWIDNAEFGRIQATGQVNLYAGPTAGTARGDLTLLALDVTPQ
                     STPQVNFLVGGGHNALVQGVVAPTTSGGVIHIGDNTNAAWQPTSILVSGTLGSASFRG
                     GSYSNVRAFDDVRLFATQDIIIGSQRFIGLIQSAAIADIEIGRNKPAGVAPTSAEQNR
                     VLVAAGKLELSASGKVVSQNTAPSVAQSVGVFLTAGNGQPDLLIDPPQLVDVYGSFIS
                     QSGAVVSSFSAGAGREA"
BASE COUNT          296 a          757 c          846 g          372 t
ORIGIN      
        1 gcttctcggc cggcgccggc cgagaagctg gacaccaccg cgcccgactg gctgatgaat
       61 gagccgtaga cgtccaccag ttgcggcgga tcgatgagca ggtccggctg gccgttgccg
      121 gcggtcagga acacgcccac cgattgcgcc acggagggcg ccgtgttctg ggacaccacc
      181 ttgccgctgg cggagagttc cagcttgccg gccgccacca ggacgcggtt ttgttccgcg
      241 ctggtcggcg ccacgcccgc cggcttgttg cgtccgatct cgatgtcggc gatggcggcg
      301 gactggatca ggccgatgaa gcgctgcgag ccgataatga tgtcctgggt cgcgaacagc
      361 cggacgtcgt cgaaggcgcg gacgttggag taactgcccc cgcggaagct cgccgacccc
      421 agcgtgccgc tgaccaggat cgaggtcggc tgccaggccg cgttggtgtt gtccccgata
      481 tggatgacgc cgccggaggt cgtgggcgcc accacgccct gcacgagcgc attgtggccg
      541 ccacccacca ggaagttcac ctgcggggtc gactgcggcg tgacgtcgag cgccagtagg
      601 gtcaggtcgc cccgcgcggt cccggcggtc ggcccggcgt agaggttgac ctggccggtc
      661 gcctggatgc ggccgaactc ggcgttatcg atccacaggc ccgacgccgg agccccgtcc
      721 gccgacgatc cgccgacgcg cagggcgccc gtagcggact ccacctgcac attggccgcg
      781 gtcatcgtcc cggccagtgt caggtcgttg gcgatgatgt ccaccgtgcc tggggcggtc
      841 acgcctttca ggctggcgac cccgccgata ttgagcgtca ggttgcggcc ggcagcgatg
      901 tcagaggcgg cggtgaagtc gttgggcgtg gtgatcgtga agtcgcgacc gaccggcgcc
      961 agttgctggc cgagcgacag ggtggcggcc tggacgacga ggtcgcggcc ggccttgaag
     1021 ctggtcagcg tcacgccgcc gctcagcgcc ttcagcgtca ggtcctgccc tgcgttcagt
     1081 gcgccggcgg tcaccgaggc gccggtgagc gtgatggagc cggacgaggc ggtgatgtcg
     1141 gccagcttca aggcgcccgc cgccccgatg gtgatgttgc gcgtggccac caggttgtgg
     1201 gtgctggtga ggtcgccgac cgtgccggtc agtgtgatgt cgcggcccgc ctgcacggcg
     1261 tcgaacacca ccgtgggcgc cttcagggtg gcgtcgcggc cggcgctgac cgacagggcc
     1321 ccgggcaggg cggacggcag gtcgacgacg gcgtcctggc ccgcctgcac gctcaccttg
     1381 gtggcgccgg agaccgagcc ggtccccagg cccaggagcg cgtcgccgtc gctggactgg
     1441 accgagatga cgccggaacc ggtgatgact gccttggtca gggaggcggt cccgccgttc
     1501 gcctggatat ggatgtcacc tcccgctgtc gcggtcccga ccgtggccga tccgcccgag
     1561 gcggagatgg agacgtcacc ggcgctggtc gccgaggtga cggtcaccga tccgccttgg
     1621 gcgaggacct gctgggcgct caccgtcccg atggtcaggc tcccgccctg catattggcc
     1681 gagccgccgg cggtcacgtt gtcgaaattg gccgagctca tgttgaccgt gacgtctccg
     1741 ccggcggaga gcttgatggt cccgcccgcc gccgagccgc cgccgatccc gaggtcggag
     1801 gccgcgctga cgacggtcgc acccccaccc gtgagcgtga ggttgtcgat ctggatcgcg
     1861 ccggtcgagg tcaacgaccc attgccgccg tgccttagcg aaccgacgtt gaggtcgccg
     1921 gactccgtgg ccagcgtcag gttgcgaccg gcggccaggg tgttggcctg cagcgcgctg
     1981 ctgttggtgg tgaggtttcc gctggcctgg gccgcgccca gggcgatggt ctcggtggcc
     2041 acgagactga tgtcgcggcc ggccgtgatg ttggaggtct gggtcgaatc gacggcgctg
     2101 tggagcaggg cgccgggggc cgggaccggt gagccggctc cgtgggccag cgcttggccg
     2161 ccgttgccga agccgtttcc atttccgttc cctgcgccgt ttccgttccc attggccggc
     2221 ggccgcacga agggttggcc gaacacctgg ccgttggtct gcagctggat g
//
LOCUS       DATAJL010000577         1551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_59956,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000577 DATAJL010000000
VERSION     DATAJL010000577.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59956"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..740
                     /locus_tag="VHN39_11055"
     CDS             <1..740
                     /locus_tag="VHN39_11055"
                     /inference="COORDINATES: protein motif:HMM:NF018877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AGE family epimerase/isomerase"
                     /protein_id="HEX2816927.1"
                     /translation="AALQAVDSSAGDLVSEASRTLAALQDRRVPGGGFRESGPHPYQA
                     NCHMHLFESALAWEAAGGPVWAALADELAMLAMSRFIDPETGALREFFDEGWQALRGQ
                     GGLVEPGHQFEWAWLLERWGVARGSAAARAAARRLFANGLKGVDPVRHVAVNALWDDF
                     SVRDGNARLWPQTEHLKAAMVLGDEAQGLRAAQGLAQYLDTPARGAWRDKLRADGTFV
                     EEPAPATSFYHLLVAILELSARAKSVA"
     gene            complement(785..1204)
                     /locus_tag="VHN39_11060"
     CDS             complement(785..1204)
                     /locus_tag="VHN39_11060"
                     /inference="COORDINATES: protein motif:HMM:NF013340.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbhB/YbcL family Raf kinase inhibitor-like
                     protein"
                     /protein_id="HEX2816928.1"
                     /translation="MPRKLTCDGASLSPDIKLPVPSPGAKSLALVMDDLDAPFGFVHW
                     LVYDIPPAVRELREGASSDSSLPPQASEGTNDFGKLHYGGPCPPAGTHRYRISLYALD
                     IGPGLPRGKTKKDLAAAVKGHILGEGQIRGLYGKGRR"
BASE COUNT          233 a          519 c          572 g          227 t
ORIGIN      
        1 tggcggcgct gcaggcggtc gattcgtcgg cgggggacct agtgagcgag gcgagccgca
       61 cactcgcggc cctgcaggac cggcgcgtcc ccggcggtgg ctttcgcgag agcgggcccc
      121 atccctacca ggccaactgc cacatgcatc tcttcgagag cgcgctcgcc tgggaagcgg
      181 cgggcggacc tgtctgggcc gcgctcgccg acgagctggc gatgctggcg atgagccggt
      241 tcatcgatcc ggagacaggc gcgctccgcg aattcttcga cgagggctgg caggcgctgc
      301 gcggccaggg cggtctggtg gagccggggc atcagttcga atgggcctgg ctcctggagc
      361 gctggggcgt ggcgcgaggc agcgcggcgg cgcgggcggc cgcgcgccgg ctcttcgcga
      421 atggcctcaa gggcgtcgat ccggtccgcc acgtggcggt caacgcgctc tgggacgatt
      481 tctcggtgcg tgacgggaac gcccggctct ggccccagac cgagcacctg aaggccgcga
      541 tggtgctggg cgacgaggcc cagggcctgc gggccgccca gggcctggcg cagtatctgg
      601 acacgcccgc gcgcggcgcc tggcgcgaca agctcagggc cgatgggacc ttcgtcgagg
      661 agcccgctcc ggcgacctcg ttctaccacc tgctggtggc gatcctggag ctgtcggcgc
      721 gggccaagtc cgtcgcctga ccgcgcggcg tcgcgcgcgg ggtccagccg ccgtcgcgga
      781 tcggtcaccg gcgacctttg ccgtaaagcc cgcggatttg accctcgccg aggatatggc
      841 ccttcacggc ggcggcgagg tccttcttgg tcttgcctcg cgggaggcca ggaccgatgt
      901 cgagagcata gaggctgatc ctgtagcggt gcgttccggc gggcggacac ggaccgccat
      961 aatggagctt cccgaagtca ttcgtccctt ccgaggcctg cgggggcaag ctggaatcgg
     1021 aggacgcgcc ttcgcgaagt tcgcgaacgg ctggcggaat atcgtagacg agccagtgaa
     1081 cgaaaccgaa cggcgcatcg agatcgtcca tgaccagcgc gaggctcttt gcgcccggcg
     1141 acgggactgg aagtttgatg tccggagaca ggctggcgcc gtcgcaggtc agcttcctgg
     1201 gcatccgggc gccgtccacg aagctcgcgc tcgcaatccg aagcgtcgga tggacctgcc
     1261 cgttcgaaag gtccgcgtgg cccgcgcgct gaagagccca agcgcccgcg agggcggccg
     1321 tggccacaac ggcgacaccg atcagcaccc tcgatctcca tcgcgcacgc gccatcggcg
     1381 ccgtctccgt tcgggtcaat tcagccgcgc ccccgcgcgc ggcgtcacgc tcgcgaaggc
     1441 agggccgatc acgaacatag agcaagccgg cctaccgatg cttcgatgcg catcgaaggg
     1501 cgcctgacac aggaggcggg tcgatagcgg gcgctaacgc ctgtgggcga g
//
LOCUS       DATAJL010000578         1531 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10030,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000578 DATAJL010000000
VERSION     DATAJL010000578.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1531
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10030"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VHN39_11065"
     CDS             complement(<1..293)
                     /locus_tag="VHN39_11065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816929.1"
                     /translation="MHRFLLMAGLSLVAALGPQAKAAPAAAQPTPAYIEFNVADPARA
                     KAFYVAVFGWSFTDYGPDYVSFATAGATGGFARARPGGAGGPLMVFPVADLEAA"
     gene            complement(353..1066)
                     /locus_tag="VHN39_11070"
     CDS             complement(353..1066)
                     /locus_tag="VHN39_11070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family protein"
                     /protein_id="HEX2816930.1"
                     /translation="MSRAVRLLNLLQALRRRRRPVTAGELSQELCVSVRTVYRDIATL
                     IGEGAAIQGEAGVGYVMQPGLFLPPLGFDRDELDALALGLTWVQRRGDPVLAAAADNA
                     MAKIRAMLPPEGREDVEDGGAMVGPIAEPPPAVVPIERLRDAIRRQRKLAIVYRDGAG
                     ALSSRVVWPIALAYPEGVRLLVAWCETRVGFRTFRVDRIVEGAVAEDRYPRSRRALTK
                     DWRAQMEAAEAAEQAASGS"
     gene            1187..1276
                     /locus_tag="VHN39_11075"
     tRNA            1187..1276
                     /locus_tag="VHN39_11075"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1221..1223,aa:Ser,seq:cga)
BASE COUNT          245 a          547 c          529 g          210 t
ORIGIN      
        1 gccgcctcca ggtcggcgac cgggaagacc atcagcggcc cgccggcgcc gccgggcctg
       61 gcgcgggcga agccgccggt cgcgcccgcg gtggcgaagc tcacatagtc ggggccatag
      121 tcggtgaagc tccagccgaa caccgcgaca tagaaggcct tggcgcgggc cgggtcggcg
      181 acgttgaatt cgatataggc cggcgtcggc tgggcggcgg ctggggcggc cttcgcctgg
      241 ggtccgaggg cggcgaccag gctgaggccg gccatgagca ggaagcgatg cattgggggt
      301 ctcctgggtt cgtcgatgac gccagcctca cccgaccgtg tgacagtttc tgtcaggagc
      361 ctgacgcagc ctgctcggcc gcctccgccg cctccatctg cgcgcgccag tccttggtga
      421 gcgcgcgccg gctgcgcgga tagcggtcct cggccactgc gccctcgacg atccggtcca
      481 cccggaaggt gcggaacccc acccgcgtct cgcaccaggc gaccagcagg cgcacgccct
      541 ctggataggc cagcgcgatc ggccagacga cccgcgacga cagcgcgccg gccccgtccc
      601 gatagacgat ggccagcttg cgctgccgcc ggatggcgtc gcgcaaccgc tcgatcggca
      661 ccacggccgg cggcggctcg gcgatcggcc cgaccatcgc gccgccgtcc tccacgtcct
      721 cgcgcccctc gggcggcagc atggcgcgga tcttggccat ggcgttgtcg gctgcggccg
      781 ccagcaccgg gtcgccgcgg cgctgcaccc aggtcaatcc cagcgccagc gcatccagct
      841 cgtcgcggtc gaaacccagc ggtggcagga atagacccgg ctgcatgaca tagccgacgc
      901 ccgcctcgcc ctggatcgcc gccccctcgc cgatcagggt ggcgatgtcg cgataaaccg
      961 tgcggaccga gacgcagagc tcctgcgaaa gctcccccgc ggtcaccggc cgccgccggc
     1021 gccgcagcgc ctgcaacagg ttcaggaggc ggaccgcgcg gctcatcgtt accgagctta
     1081 gccggatcgc cgggccacgc cacgccgcgc ttgcgtgcag ggggtcggat gagtaggttc
     1141 cgcgcctcgc tcagcggacc cctattccgg gtccggcgcc ggctctggag aggtggctga
     1201 gtggtcgaaa gcaccgcact cgaaatgcgg cgtacctgga agggtaccgt gggttcgaat
     1261 cccaccctct ccgccaacac atcttgaaat aacagataaa agtctaaggc gcggtcatcg
     1321 gccccacctt aggctcgggc gcgcagcatc gtccaatgtg acgtttggat gtgacgttta
     1381 gaatagatgg agacccgcaa tcgcgctggc gaacagggcg agggtcagac ctccgcttgc
     1441 cgccgcaagc agccagccca cgacgatggc cacgccgtcg cgctcgatga ggccgatgcc
     1501 aaaggcggaa atcccgaggg cggaggcggt g
//
LOCUS       DATAJL010000579         3794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10074,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000579 DATAJL010000000
VERSION     DATAJL010000579.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3794
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10074"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1420
                     /locus_tag="VHN39_11080"
     CDS             <1..1420
                     /locus_tag="VHN39_11080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816931.1"
                     /translation="VACYRASDEPWRVVHPWFTLPPAAHKPANVAKSADAPVAPGTKA
                     SEPPPTFGGKPYFRRFGNARAGPWLARTWPQGLPLRLAADAAIVFPGKGDVERWLPHR
                     LDGEREGANLHLDVKNRSADWLRQALVNELSWVRICLEPADDAPPVEPAWIASLAASA
                     DPRVRAFATCPLSQPLQLGLIRNLTEQYSIQELWAIKGAMDVALLSGGAPALPSPTEL
                     DPGAPGQSGAVGSWSDQFYKDLQLVATSFDAFFKASTDGIEKNGLAWGWDGFLDGQIT
                     NFSFKEAVANFEKLPRRQRRAFILSLPPGAQTLLSAAVAFIHSPEFTSANAFQDYSEL
                     ELGKLQNVRTGIEWAGKLADVVDLNLLDWLCPSRWRRLSIADAGRTIQALDEVQLVVD
                     NILSSEWENRGKTRWANPRRGRKPDECIPDGPDIALHAAEQGLIRWVEPETGQDSDLW
                     VAELPEAAKASPEGPETSQPGT"
     gene            complement(1433..2572)
                     /locus_tag="VHN39_11085"
     CDS             complement(1433..2572)
                     /locus_tag="VHN39_11085"
                     /inference="COORDINATES: protein motif:HMM:NF015400.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase NADP-binding
                     domain-containing protein"
                     /protein_id="HEX2816932.1"
                     /translation="MSASRRRAKPLSAPVMVYGATGFSGRAIAERLCGAGCDVVLAGR
                     SEAGLRAVAQPLGAPFRVFDLRDPAALTLGLAGVAVVVHAAGPYLDTAAPMMEACIRA
                     GVHYLDLSGEWPSFALAQNLGSQAAGAGVMLMPGVGFWIVGTDCLLAHAARQAPDAVL
                     LRVASSFSPVVSRGTVRTALGLLSGRVIVRRSGAVTSIPAGSLQRTFDYGFGERRSLA
                     MSLPDVITGQQTTGVASIEAYLEAPTLFRWAWQTGALAAEVNGEASVRRMLSPLSRLW
                     PEQPTAEAQSHAVNSIVVEAVDAWRRTTRFGMQTRDGYSVTVRTTQAVVARVLAGVHP
                     PGFQTPAGVFGAGLLRDMDCAWDFDAGPLAPAGPRVGRPAPAAAS"
     gene            complement(2569..3633)
                     /locus_tag="VHN39_11090"
     CDS             complement(2569..3633)
                     /locus_tag="VHN39_11090"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX2816933.1"
                     /translation="MTVQWAPPAGAASASSADLVSEVLAEYGAAARETVERYFAADAP
                     SPYLHDLVVDYPRRGGKMLRSSLCIAHARAFGASLEKALLTAAAIEMLHNGLLIHDDI
                     QDGSEERRGRPTLQVLHGVPLALNAGDMLLLLSLRPLMDNASRVGEWLAIEVLRETEV
                     MARESAEGQALELGWRDLNDTTVTEADYLRMVLKKTAWFSTIYPARVGAMIGSEGRMD
                     PSIFMHFGFFLGAAFQIRDDLLNLVGDASYGKELNGDLYEGKRTLMLIHARQACSPAE
                     RDQFDQLLSFPRQQRTAEHVAWLRAAIDRHGSIDYATKVAQALVGAAGHEYERVYGGL
                     PDSRDKQFIGALVPWVLERS"
BASE COUNT          608 a         1348 c         1305 g          533 t
ORIGIN      
        1 cgtggcctgc tatcgggcaa gcgacgaacc ctggcgggtg gtccatccct ggttcacgct
       61 cccgcccgcc gcgcacaagc cggcgaacgt ggcgaagtcc gccgacgcgc cagtggcgcc
      121 cggaacgaag gcctccgaac cgccaccgac gtttggcggc aagccctatt tcaggcgctt
      181 cggcaacgcc cgcgccggcc cgtggctggc gcggacctgg ccgcagggcc tgccgctgcg
      241 cctggccgca gacgccgcga tcgtgttccc gggcaagggg gacgtggagc ggtggttgcc
      301 gcatcgcctg gacggcgagc gcgagggcgc gaacctgcac ctcgacgtca agaacaggtc
      361 cgccgactgg ttgcgacagg cgctggtcaa cgaactgtcc tgggttcgga tctgcctgga
      421 accggcggac gacgccccgc cggtcgagcc ggcctggatc gccagtctcg cggcgtccgc
      481 ggaccctcgt gtccgcgcgt tcgcgacctg tccgctctcg cagccgcttc agctgggcct
      541 cattcgcaac cttacggagc aatattcgat acaggaactc tgggccatca agggcgcgat
      601 ggatgtggcg ctgctgtccg gtggcgcgcc ggccttgcca tcgccgacgg aactcgaccc
      661 cggcgcgccc ggccagagcg gcgcggtggg gagctggtcc gaccagttct acaaggacct
      721 ccagctcgtg gcgaccagct tcgacgcctt cttcaaggcc tcgaccgacg ggatcgagaa
      781 gaatggcctg gcctggggat gggacgggtt cctcgacggc cagatcacca acttctcgtt
      841 caaggaagcg gtcgccaact tcgagaagct gccgcgccgt cagcggcggg ctttcatcct
      901 gtctctcccg ccgggcgcgc agacgctgct gtccgccgcc gtcgcgttca tccacagtcc
      961 ggaattcacg tccgccaacg ccttccaaga ctattccgag ctggagctcg gcaagctgca
     1021 gaacgtccgg accggcatcg aatgggcggg caagctggcc gatgtcgtcg atctcaacct
     1081 gctggactgg ctctgtccct cccgctggcg ccgcctgtcg atcgcggacg ccggccggac
     1141 gatccaggcc ctcgacgagg tccagctggt cgtcgacaac atcctcagca gcgaatggga
     1201 aaaccgcggc aagacgcgat gggccaatcc gcgccgcggc cgaaagcccg acgagtgcat
     1261 cccggatgga cccgacatcg cgctgcacgc ggccgaacag ggcctgatcc gctgggtcga
     1321 accggaaacc ggccaggaca gcgatctttg ggtggccgag ctgcccgagg ccgccaaggc
     1381 cagtcccgaa gggccggaaa ccagccaacc cgggacgtaa acgctcggat ctctaggagg
     1441 ccgccgccgg cgccgggcgt ccgacccgag ggccggcggg cgcgagcgga cctgcgtcga
     1501 agtcccaggc gcagtccatg tcgcgcaaga ggcctgcgcc gaagacgccg gcgggggtct
     1561 ggaagcccgg tggatgcacg ccggccagca cgcgcgccac aacagcctgc gtcgttcgga
     1621 cggtgacgga atagccgtcg cgggtctgca tgccgaaacg ggtggtgcgc cgccaggcgt
     1681 ccaccgcctc caccacgatc gaattcacgg cgtgcgactg cgcttcggcg gtgggctgtt
     1741 ccggccagag gcggctcaag ggtgagagca tacggcgcac gctcgcctcg ccgttcacct
     1801 ccgctgcgag cgcgcccgtc tgccaggccc aacggaagag cgtcggcgcc tccagatagg
     1861 cttcgatgct ggctacgcct gtcgtctgct ggccggtgat cacgtcgggc aggctcatgg
     1921 cgaggctgcg gcgctcgccg aacccgtagt cgaaggtcct ctggaggctg cccgccggta
     1981 tcgatgtcac ggcccctgac cggcgcacga tcacgcggcc ggacaaaagc cccaaggcgg
     2041 tacggaccgt gccgcgcgag accacgggcg aaaacgagct cgccacgcgc agcaggacgg
     2101 cgtccggcgc ctgtcgcgcc gcgtgggcga gcaggcaatc tgtgccgacg atccagaagc
     2161 cgacccccgg catgagcatg acccccgcgc ccgcggcctg gctccccaaa ttctgggcca
     2221 gagcgaacga cggccactcg cccgagaggt cgagatagtg aacgcctgct cggatgcacg
     2281 cctccatcat cggagcggcc gtgtccaggt acggccccgc cgcgtgcacg accacagcca
     2341 ctccggcgag gcccagggtg agcgccgccg ggtcccgcag gtcgaagacc cggaagggcg
     2401 cgcccaaagg ctgggccacc gccctgaggc cggcctcgct gcggccggcc aggacgacgt
     2461 cgcagccggc gccgcaaagc cgctcggcga tggcgcggcc gctgaagccg gtcgcgccat
     2521 agaccatcac cggcgcggac aaaggcttgg cgcggcggcg cgaggcgctc atgaccgctc
     2581 gagcacccag ggtacgagcg cgccgatgaa ctgcttgtcg cgggaatccg gcagtccgcc
     2641 gtagacgcgc tcgtattcgt gcccggcggc gcccaccagc gcctgggcga ccttggtggc
     2701 gtagtcgatc gagccatgcc ggtcgatcgc cgcgcgcagc cacgccacgt gctcggcggt
     2761 gcgttgctga cgcgggaagg acagcagctg atcgaactga tcccgctccg cgggcgagca
     2821 ggcctggcgt gcgtggatca gcatcagcgt gcgcttgccc tcatagaggt cgccgttgag
     2881 ctcctttccg tagctggcgt cacccacgag gttcagcagg tcgtcgcgaa tctggaacgc
     2941 cgcgccgagg aagaacccga agtgcatgaa gatcgaagga tccatccggc cctccgagcc
     3001 gatcatcgcg ccgacgcgcg cggggtagat ggtcgagaac catgcggtct tcttgagcac
     3061 catccgcagg tagtcggctt ccgtgaccgt cgtgtcgttg aggtcccgcc agcccagctc
     3121 gagggcctgt ccctccgcgc tctcgcgcgc catcacctcg gtctcccgaa ggacctcgat
     3181 cgccagccat tcgccgacgc gggacgcgtt gtccatcagc gggcgaaggc tcagcagcag
     3241 cagcatgtcg ccggcgttga gcgcgagggg cacgccgtgc agcacctgca gcgtcggccg
     3301 gccgcgacgc tcttcgctgc cgtcctggat gtcatcgtgg atgagcagcc cattgtgcag
     3361 catctcgatg gccgccgcgg tcagcagggc cttttccagg ctcgccccga aggctcgcgc
     3421 gtgggcgatg cagaggctgg accgcagcat cttgccgccc cggcgcgggt agtcgaccac
     3481 caggtcgtga aggtaggggc tcggcgcgtc ggcggcgaag taccgctcca ccgtctcccg
     3541 cgccgccgcg ccgtactccg ccaggacctc cgagacgagg tcggcggacg acgccgacgc
     3601 ggcgcccgcg ggcggggccc actggaccgt cattccacga cccgaacagc aagggtcccg
     3661 atcggttgca ggctgccgac atccacgatg gttcccgaat aggcgccggg cggctggtcg
     3721 tccgggacgt cgattcgcag ttccagtccg ccgtccgggc gcaggccgaa ccgaacctgg
     3781 ctgatcggcg gcaa
//
LOCUS       DATAJL010000580         2681 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36028,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000580 DATAJL010000000
VERSION     DATAJL010000580.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2681
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36028"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            164..685
                     /locus_tag="VHN39_11095"
     CDS             164..685
                     /locus_tag="VHN39_11095"
                     /inference="COORDINATES: protein motif:HMM:NF016836.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BON domain-containing protein"
                     /protein_id="HEX2816934.1"
                     /translation="MPREDWQDREDERRRAASRNRNDYGQADYSTDYAYDPERGGGYR
                     RFSTDDPAYVRRMDDGDYRPPEPPRSWMDRAGALFSPGPRAPDTETHARRRRGPSDRV
                     LWAVIVERLEDERGLDLRGVEVIVEDAEVTLNGRVRHRADKRRIEDVAEIEGVRHVQN
                     NLRVHDRGHWTFL"
     gene            776..1057
                     /locus_tag="VHN39_11100"
     CDS             776..1057
                     /locus_tag="VHN39_11100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816935.1"
                     /translation="MTRKQTDDEARRAFTHGSGGANADMAVEAAPIHEDRHIEVPHAR
                     EIEPLKEGEKHDHMAAREKSAEDRQEALLDEALEETFPGSDPISPKHIT"
     gene            1117..2034
                     /locus_tag="VHN39_11105"
     CDS             1117..2034
                     /locus_tag="VHN39_11105"
                     /inference="COORDINATES: protein motif:HMM:NF036967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HEX2816936.1"
                     /translation="MKLPPPRIDLRGLTAVKVGVSRFAIDDPYYLVLAMRWPTFLVAV
                     LAGYMAINLVFATLFWLAPGSVSNAHAGSFGDAFFFSVETLATVGYGAMTPATTYGHI
                     LSTAEIFVGMFLTALVTGAFFARFARPKPRLVFSDVAVITPYDGRQALMVRVASRRMQ
                     GISEATARISYLRDEPVGDTRFRRFSELKLVRSNIPVLSLSWTLIHLIDEQSPLYNLT
                     AERLAAEAPNLMVSITGFDEAISSTINDRKVYRQEDVRFGHVFDNILRDLPGGFIELD
                     ITRIHDTTPVAAPGDPLAVSVQESAVRAS"
     gene            complement(2007..>2681)
                     /locus_tag="VHN39_11110"
     CDS             complement(2007..>2681)
                     /locus_tag="VHN39_11110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2816937.1"
                     /translation="SEAQRRSRLAQFGLGYDKVETTVANLSGGERARLLLNMVAMEAP
                     HLLILDEPTNHLDIDSRRALLDALNDYEGAVILITHDRSLMELVADRLWLAADGGIEP
                     FDGDMEDYAKFVLDRARVAARAPSQVAEEPVKQPPPPPASRPKAPTGNARRRTEAAEA
                     ALGRAAGALAQIDAQLTDPVVFAKDPGKAAELGRRRDAAQATVHAAEAEWLAAQEAYE
                     ALTADS"
BASE COUNT          428 a          928 c          914 g          411 t
ORIGIN      
        1 gcggagcggg tcgcgtcggg cggggtcacg gcggggcgaa gtctccggtg agtcgggcag
       61 aagagtcagg ccgccaggaa cggcgcggtt cccgtcaaga tagggaaccg aaggccacgg
      121 cgaaggttct tcgcgcacag acatgacaac aaggagacgc gccatgcccc gggaagattg
      181 gcaggaccgt gaggacgaac gccgccgcgc ggcctcgcgc aaccgcaacg actatggtca
      241 ggccgactat tccaccgact acgcctacga tccggagcgg ggtggcggct atcgtcgctt
      301 ctccacggac gatccggcct acgtccgccg gatggacgac ggcgactatc gcccgcccga
      361 gccgccgcgt tcctggatgg accgggccgg ggcgctcttc tcgcccggcc cgagggcgcc
      421 ggacaccgag acccatgcac gccgccgccg gggtccctcc gaccgcgtgc tctgggccgt
      481 gatcgtcgaa cggctggagg acgagcgcgg tctcgatctg cggggcgtcg aggtgatcgt
      541 cgaggacgcc gaggtcaccc tgaacggccg tgtccgtcac agggccgaca aacggcgcat
      601 cgaggatgtc gcggagatcg agggcgtgcg tcacgtccag aacaacctgc gggtccatga
      661 tcgcggacac tggacgttcc tctagccgca ggccctcgcc gacgcggaaa tagccggcaa
      721 cctaagcgtc gctttgcggg ttcagtcctg agctagacac ccaaggagac acccgatgac
      781 ccgcaagcag accgatgacg aggcccgccg cgcgttcacg cacgggtccg gcggcgccaa
      841 cgcggacatg gctgtcgagg ccgccccgat ccacgaggac cgccacatcg aggtcccgca
      901 tgcccgtgaa atcgagccgc tcaaggaagg cgagaagcac gaccacatgg cggcccgcga
      961 aaagtccgcg gaggaccgtc aggaggccct gctcgacgaa gcccttgagg agaccttccc
     1021 gggtagcgac ccgatcagcc ccaagcacat cacctgatcc ccggagcggc gggtccgtcc
     1081 ttcgacgggc tcgccgtccc gtgctagtca gggccggtga agctcccgcc gccccgcatc
     1141 gatctcagag gcctgacggc ggtcaaggtc ggcgtcagcc ggttcgccat cgacgacccc
     1201 tactacctcg tcctggccat gcgctggccg accttcctgg tggccgtgct ggccggctat
     1261 atggccatca atctggtgtt cgcgaccttg ttctggctcg cgcccggatc ggtgagcaac
     1321 gcccacgcgg gcagctttgg ggacgcgttc ttcttcagcg tcgagaccct ggcgaccgtc
     1381 ggctacggcg ccatgacgcc ggcgacgacc tatggccaca tcctgtccac cgccgagatc
     1441 ttcgtgggca tgttcctcac ggcgctggtc accggcgcat tcttcgcccg gttcgccagg
     1501 cccaagccgc ggctggtgtt cagcgatgtc gcggtcatca cgccctatga cggccgccaa
     1561 gccttgatgg tgcgggtcgc gagccgccgt atgcagggga tcagcgaggc caccgcccgg
     1621 atcagctatc tgcgcgatga gccggtgggc gacacccgtt tccgccgttt cagcgaactc
     1681 aagctggtgc gcagcaacat ccccgtcctc agcctctcct ggaccctgat ccacctgatc
     1741 gacgagcaga gcccgctcta caacctgacc gccgagcgcc tggcggccga ggcgccgaac
     1801 ctgatggtgt cgatcaccgg tttcgacgag gcgatctcgt cgacgatcaa cgaccgcaag
     1861 gtctatcgcc aggaggacgt gcggttcggg cacgtgttcg acaacattct gcgcgacctg
     1921 ccgggcggct tcatcgaact cgacatcacc cgtatccacg acaccacgcc ggtcgccgcg
     1981 cccggcgatc cgctggccgt ttcggttcag gaatcggcgg tcagggcctc gtaggcttcc
     2041 tgggcggcga gccactcggc ctcggcggcg tgcacggtgg cctgagcggc gtcacgacgc
     2101 cggccaagct cggcggcctt gccaggatcc ttggcgaaca ccacaggatc ggtgagctgg
     2161 gcgtcgatct gggcaagcgc gccggccgcc cgtcccagcg ccgcctcggc cgcctcggtc
     2221 ctgcggcgcg cgtttccggt tggcgccttc ggccgggagg ccggcggggg aggtggctgt
     2281 ttgacgggtt cctcggccac ctggctcggg gcgcgggccg cgactcgggc gcggtcgagg
     2341 acaaacttgg cgtagtcctc catgtcgcca tcgaagggct cgatcccgcc gtccgcggct
     2401 agccacaggc ggtcggccac cagctccatc agcgaacggt cgtgggtgat caggatcacc
     2461 gcgccctcgt aatcgttgag cgcgtccagc agggcgcggc gcgagtcgat gtccaggtgg
     2521 ttggtgggct cgtcgaggat cagcaggtgc ggggcttcca tggccaccat gttcagcagc
     2581 agccgcgccc gctccccgcc ggagaggttg gcgaccgtgg tctcgacctt gtcgtagccc
     2641 aggccgaatt gggccaggcg agagcggcgc tgggcctcgg a
//
LOCUS       DATAJL010000581         5535 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68468,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000581 DATAJL010000000
VERSION     DATAJL010000581.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5535
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68468"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..738
                     /locus_tag="VHN39_11115"
     CDS             <1..738
                     /locus_tag="VHN39_11115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2816938.1"
                     /translation="VDVNPQGGALRLVVRDSGVGIAPEKLPALFEKFTQADNSATRRF
                     GGTGLGLAICRELTQMMGGSINVESRESQGSTFTVELPLIRGEATGALTAEAAPNSGD
                     RNIRLLAAEDNPTNQQVLAAVMESLGIDIDIVSDGRQAVEAWKVGGYDLILMDIQMPV
                     MDGIDAAREIRAIEVEEQRKRIPIVALTANALTHQVEEYMAVGMDGHVAKPIEIAKLY
                     EAISAALTAAATGASGRTPAAATSQVA"
     gene            complement(943..1767)
                     /locus_tag="VHN39_11120"
     CDS             complement(943..1767)
                     /locus_tag="VHN39_11120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEX2816939.1"
                     /translation="MRQWTVDAFAAQPFRGNQACVLEPMAGWPDAAWMQTLAAENNQA
                     ETAFLLKTADPSRFGLRWFTPALEVPLCGHATLASGHVLLSEIGITTDLLTFDTKSGP
                     LTVRRSADAYEMDFPAQPPQRVETPAGLAAALGVEPQEVWASAYLVAVLKDEAEVHAC
                     TPDLAALEAVSSAATGGRGNVGIAALADAGRPYDVVDRFFAPGSGIPEDPATGSLHCI
                     LTPLFADKLGRPRVKFLQAYPGRGGDLDCEVRGDRVLLRGRAVTVLEGNLRIAPQS"
     gene            complement(1826..2398)
                     /locus_tag="VHN39_11125"
     CDS             complement(1826..2398)
                     /locus_tag="VHN39_11125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEX2816940.1"
                     /translation="MTESLERRLEDIVRTGPTLMQVLTTVRDLDLPDWLIFSGAVYQR
                     VLNQLTGRDLDYGIKDYDLGYYDPSDTSWKAEDAVIRRVAAAFQPPLRELVEVRNQAR
                     VHLWFETKFGEPYAPLTCTAQALERFTSATFSVGVRLEPDDRLTIVAPFGLEDLFALR
                     LRPNPTRNTNGFSRTASAATARWPELIITN"
     gene            complement(2409..3209)
                     /gene="thiD"
                     /locus_tag="VHN39_11130"
     CDS             complement(2409..3209)
                     /gene="thiD"
                     /locus_tag="VHN39_11130"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEX2816941.1"
                     /translation="MTSLGRVLIIAGSDSSGGAGIQADIKTVTALGAYAATAITAITV
                     QNTLGVSAAWPVPADVIEAQARAVLDDIGADVIKTGMLGDADVVETIARLLDWAGLPV
                     VIDPVMVAKGGARLLADDAVAPVRSLLVPRAALLTPNAPEAETLTGLPVETTDDLRRA
                     GEALLALGAGAVLMKGGHIAGDRVVDVLMTPYGETVFEGERIETRHTHGTGCTLASAC
                     AAGLAQGLSLEAAAARAWDYVHRAMRQAPGLGRGHGPLDHGWPLRERG"
     gene            3296..3598
                     /locus_tag="VHN39_11135"
     CDS             3296..3598
                     /locus_tag="VHN39_11135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX2816942.1"
                     /translation="MSPFEAIAEPNRRRILDVLRAGERPAGDLVEATGLSQPGVSKHL
                     KLLREAGLVSVRPDGQRRLYKLEPDELAELDAWLKPFRTFWADRLDALEDHLEKEQ"
     gene            3595..4104
                     /locus_tag="VHN39_11140"
     CDS             3595..4104
                     /locus_tag="VHN39_11140"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2816943.1"
                     /translation="MSMTLDADLGRVTVADDALRVVFRRFYKKPAEKVWAAVTVPERL
                     ADWLANAEIEPRVGGSVRFTWTSANHSMEGKVVAYDPPRIFAWTWPLDGRDTVVSFEL
                     EPDGDGCWLTLTHAGLDPKGKQGGGVRAGWHSHLEGVGDAIEGRATTWATVVAREKAI
                     SPNYPKLSD"
     gene            4189..5121
                     /locus_tag="VHN39_11145"
     CDS             4189..5121
                     /locus_tag="VHN39_11145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2816944.1"
                     /translation="MSVLALDGVTKRFEGFTAVDNLSFEVPEGGIFGFLGANGAGKTT
                     TLRMALDILRPTRGTIEVLGRPPGRRGGGEIGFLPEERGLYRQMTVIETVVYFGRLKG
                     MQAAAARASAETLIERFGLTEFAHRKVEQLSKGMAQKVQLASALVTAPRLLILDEPFA
                     GLDPVNQSVLEEVILDLEKTGSTVIFSTHVMQHAERLCDRLLLIARGRKVFQGSQEEA
                     RAQLPAQLSLAARADPGKLPGVGRAIRAGDAGEGWTDWDITLAPGASAGSLLEACTTG
                     GFALRRFETHRASLHEVFLHLAGGDAPGETGPRS"
     gene            5118..>5535
                     /locus_tag="VHN39_11150"
     CDS             5118..>5535
                     /locus_tag="VHN39_11150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816945.1"
                     /translation="MNAMLLVAIREFRQICATRSFWITLFLLPVAIVLSQASARLLQP
                     PPGVAVVIVDDSGRYAQILKSRVALDRDRQVLSELGAYAQKWKIAPTGPGAVWGQGAH
                     LFSPAEVAAFEAAGGLKSAEAELARRKPAAAPAFHAP"
BASE COUNT          880 a         1902 c         1956 g          797 t
ORIGIN      
        1 gtcgacgtga acccgcaggg cggcgccctg cgcctggtgg tccgagactc gggcgtgggc
       61 atcgcgccgg aaaaactgcc ggcgctgttc gaaaaattca cccaggccga caactccgcc
      121 acccgtcggt tcggcggcac cggcctgggt ctggccatct gccgcgagct cacccagatg
      181 atgggcggct cgatcaacgt ggaaagccgc gagagccagg gctcgacctt caccgtcgag
      241 ctgccgctga tccgcggcga agcgacgggc gcgctgacgg ccgaagctgc gcccaacagc
      301 ggcgaccgca acatccggct gctggccgcc gaggacaacc ccaccaacca gcaggtgctg
      361 gccgctgtga tggagtcgct cggcatcgac atcgacatcg tctccgacgg caggcaggcg
      421 gtcgaggcct ggaaagtcgg cggctacgac ctgatcctga tggacatcca gatgccggtg
      481 atggacggca tcgacgccgc ccgcgagatc cgcgccatcg aggtcgagga gcagcgcaag
      541 cgcatcccga tcgtggcgct caccgccaac gcgctcaccc accaggtgga agaatacatg
      601 gcggtcggca tggacggcca cgtggccaag ccgatcgaga tcgccaagct ctatgaggcg
      661 atcagcgccg cgctcaccgc cgcggccacg ggcgcctcgg gccgcacgcc ggccgccgcc
      721 acgtcgcaag tcgcctgatc ccatttcgaa gctgaatagc cggcaacgtg gccctcaggt
      781 ccgcgtcagc caacctgtgg tcttgtcgga accgtggcgt gaggagcgcc acgcccggaa
      841 tggccgctta ggctggcgcc aagccgcgac agccgaacag acctccggag tgcgggaacg
      901 ccccgggacc tcgcggtccc ggggtgtttt catccccctc gtctaagatt ggggtgcgat
      961 gcgcaggttt ccttcgagca ctgtcaccgc ccggccgcgc agcaggacgc ggtcgcccct
     1021 cacctcgcag tcgagatcgc cgccgcggcc gggataggcc tgcaggaact tcacgcgcgg
     1081 acggccgagc ttatcggcga acaggggcgt caggatgcag tgcagcgagc cggtggccgg
     1141 atcctccgga atgccggaac ccggggcgaa gaagcggtcg accacgtcat agggccggcc
     1201 agcgtcagcc agggccgcga tcccgacatt gccgcgcccg ccggtggcgg cgctggaaac
     1261 cgcctccaga gccgcgagat cgggggtgca ggcgtgcacc tcagcctcgt ccttcaggac
     1321 cgcgacgaga taggccgagg cccagacctc ctgcggctcg acgcccaggg ccgcggcgag
     1381 gccggccgga gtctccacgc gctgcggagg ttgagcgggg aagtccatct cataggcatc
     1441 cgccgaccgg cgcacggtga gcggcccgga cttggtgtcg aaggtgagca ggtcggtcgt
     1501 gatcccgatc tcgctcaaga ggacgtggcc ggaggcgagc gttgcgtggc cgcagagcgg
     1561 cacctccagc gccggagtga accagcgcag gccgaagcgg gaggggtcgg ccgtcttcag
     1621 gaggaaggcg gtctcggcct ggttgttctc ggcggcgagg gtctgcatcc aggcggcgtc
     1681 cggccagccg gccatgggct cgagaacgca ggcctgattg ccccggaagg gctgggcggc
     1741 gaaggcgtcg acggtccact ggcgcatggc gggttctcct ctggcggagc ttgcagatag
     1801 ccaccctcag gaattaggca agtggctaat tggtaatgat gagctcgggc cagcgcgcgg
     1861 tggctgcaga ggctgtgcgg gagaagccgt tggtgttgcg cgtcgggttg ggccgcaggc
     1921 gaagcgcgaa caggtcctcc aggccgaacg gggcgacgat ggtcagtcgg tcgtcgggct
     1981 ccaggcgcac gcccaccgag aaggtggcgc tggtgaagcg ctcgagcgcc tgggcggtgc
     2041 aggtgagcgg cgcatagggc tcgccgaact tggtctcgaa ccacaggtga actcgggcct
     2101 ggttgcggac ctccaccagc tcgcgcagcg gcggctggaa ggcggcggcc acccggcgga
     2161 tcaccgcgtc ctcggccttc caggaggtgt cggagggatc gtagtagccg aggtcgtagt
     2221 ccttgatccc gtagtcgagg tcgcggccgg tgagctggtt cagcacccgc tggtagacgg
     2281 cgccggagaa gatcagccag tcgggcaggt cgaggtcccg caccgtggtc agcacctgca
     2341 tcagggtggg cccggtgcgg acgatatcct ccagccggcg ttccaggctc tcggtcatgc
     2401 cttgcccctt accctcgctc tcgcagcggc cagccgtggt cgaggggacc gtggccgcgc
     2461 cccagcccgg gcgcctgccg catggcgcga tgcacatagt cccaggcccg cgcggccgcg
     2521 gcctcgagcg acaagccctg ggccaggccc gccgcgcagg ccgaggcgag cgtgcagccg
     2581 gtgccgtggg tatggcgggt ctcgatccgc tcgccttcga agaccgtctc gccgtagggc
     2641 gtcatcagca catcgaccac gcggtcgccg gcgatatggc cgcccttcat caagacggcg
     2701 cccgcgccca gcgccagcag cgcctcgccg gcgcggcgca ggtcgtcggt ggtctcgacg
     2761 ggaagaccgg tcagggtctc ggcctccggg gcgttggggg tcaggagcgc tgcgcgcgga
     2821 accagcaggc tccgcaccgg cgccacggcg tcgtcggcca gcaggcgggc gccgcccttg
     2881 gcgaccatca ccggatcgat caccacgggc aggcccgccc aatcgagaag ccgggcgatc
     2941 gtctcgacca cgtcggcgtc gcccagcatg ccggtcttga tgacgtcggc gccgatgtcg
     3001 tccagcacgg cgcgcgcctg ggcctcgatc acatcggccg gcacgggcca ggcggcgctg
     3061 acgcccagcg tgttctgcac ggtgatcgcg gtgatggcgg tggccgcata ggcccctagc
     3121 gccgtgaccg tcttgatgtc ggcctggatc ccggccccgc cgctggaatc cgagccggcg
     3181 atgatcagga ctcggcccag cgacgtcatg agtccgcgat agcgcgaccg ggtgcgattt
     3241 gcatcggaca ataaaattcc ttgacggtta tatttctatg tatgcatata aagacatgag
     3301 cccgttcgaa gccatcgccg aacccaaccg ccgccgcatc ctcgacgtgc tgcgggccgg
     3361 cgagcgtccc gccggcgacc tggtggaggc cactggcctc agccagcccg gcgtgtccaa
     3421 gcacctgaaa ctgctgcgcg aggcgggcct ggtcagcgtg cggccggatg gccagcgccg
     3481 gctctacaaa cttgaacccg acgaactggc cgagctcgac gcctggctga aacccttccg
     3541 caccttctgg gccgatcgcc tcgacgccct ggaagaccat ctggagaaag aacaatgagc
     3601 atgaccctgg acgccgacct cggtcgggtg actgtcgccg acgacgccct gcgggtggtc
     3661 ttccgccgct tttacaaaaa gcccgccgaa aaggtctggg cggccgtgac cgtgccggaa
     3721 cggctggccg actggctggc caacgccgag atcgaaccgc gggtcggcgg gagcgtccgt
     3781 ttcacctgga ccagcgccaa ccacagcatg gagggcaagg tcgtcgccta tgacccgcca
     3841 cggatcttcg cctggacctg gccgctggat ggccgcgaca ccgtggtcag cttcgagctg
     3901 gagcctgatg gcgacggctg ctggctgacc ctgacccacg ccgggctcga cccgaagggc
     3961 aagcagggcg gcggcgtgcg cgccggctgg cattcgcacc tggaaggcgt cggcgacgcc
     4021 atcgagggcc gcgccaccac ctgggccacc gtggtcgccc gcgagaaggc gatctcgccc
     4081 aactatccca agctgtccga ctgaccccac cccttggccg gcgccgcaaa taggcgttga
     4141 gtggcgacgg gcggcccgcc agaaggccgc ccgtcggggg agtctcgctt gtcggtcctg
     4201 gctttagacg gcgtcaccaa acgcttcgaa ggcttcacgg ccgtcgacaa cctgagcttc
     4261 gaagtcccgg agggcgggat cttcggcttc ctaggcgcca atggcgcggg caagaccacg
     4321 accctgcgca tggcgctgga catcctgcgg cccacacgtg ggaccatcga ggtcctgggc
     4381 cgcccgcccg gccgccgcgg cgggggcgag atcgggttcc tgccggagga gcgcggcctt
     4441 taccggcaga tgaccgtgat cgagacggtg gtctatttcg gccggctgaa ggggatgcag
     4501 gccgccgccg cgcgggcgtc cgccgagacc ctgatcgaac gtttcggcct gaccgagttc
     4561 gcgcaccgca aggtcgaaca gctgtccaag ggcatggccc agaaggtcca gttggcctcg
     4621 gccttggtga ccgccccgcg cctgctgatc ctcgatgagc ctttcgcggg tctcgatccg
     4681 gtcaaccagt cggtgctgga agaggtgatc ctcgacctcg agaaaacggg atcgacggtg
     4741 atcttctcca cccacgtcat gcaacacgcc gagcggctct gcgacaggct gttgctgatc
     4801 gcgcgcggca ggaaggtgtt tcagggcagc caggaggagg cgcgcgccca gctgccggcg
     4861 cagctgtcgc tggccgcgcg ggccgatccg ggaaagctgc caggcgtcgg gcgcgcgatc
     4921 cgcgccggtg acgcaggcga gggctggacc gactgggaca tcacgctcgc accgggcgcc
     4981 agcgcgggct cgctgctgga agcctgcacg accggcggct ttgctctgcg gcgcttcgag
     5041 acccaccggg ccagtctgca cgaggtcttc ctgcatctgg ccggcggcga tgcgcctggc
     5101 gaaacggggc cccggtcatg aacgccatgc tgctggtcgc catccgcgag ttccgccaga
     5161 tctgcgccac gcgcagcttc tggatcaccc tcttcctgtt gccggtcgcc atcgtgctga
     5221 gccaggcctc cgcgcggctc ctgcagccgc cgcccggcgt cgcggtggtg atcgtcgacg
     5281 acagcggccg ctatgcacag atcctcaaga gccgggtcgc cctcgaccgc gaccgccagg
     5341 tgctgagcga actcggcgcc tacgcccaga agtggaagat cgcacccacc ggacctggcg
     5401 ccgtctgggg ccagggcgcg catctcttca gccccgccga ggtggcggcc ttcgaggcgg
     5461 cgggtgggtt gaaaagcgcc gaggccgagc tcgcgcgccg caaacccgcc gcggcgccgg
     5521 ccttccatgc gcccg
//
LOCUS       DATAJL010000582         5495 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10108,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000582 DATAJL010000000
VERSION     DATAJL010000582.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5495
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10108"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..860)
                     /locus_tag="VHN39_11155"
     CDS             complement(<1..860)
                     /locus_tag="VHN39_11155"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX2816946.1"
                     /translation="MSPDEALARIHRYDGRLKAFVRVFDPALGDGDGPAFAIKDLFDV
                     KGVPTGGGAKVPLAENPVAHALVVQKLLDAGWRAVGKTQTVELAYGGWGTNRAVGAPW
                     NPWDAKAHRAPGGSSSGSAVAVAAGLVDAALGSDTGGSVRIPASTCGVVGLKPGRGLV
                     SLQGVHPLAPTLDTVGALARDVATAARMLGVISGPDGKTATRGAFDAEAALAAEVEGR
                     RLAAIPLEHLGDLNPDVGRLYLAALDRLRKTGVTVQMVRPPKALDDSFAPNGLLMAGE
                     GWRIWRERIET"
     gene            948..3644
                     /gene="ppc"
                     /locus_tag="VHN39_11160"
     CDS             948..3644
                     /gene="ppc"
                     /locus_tag="VHN39_11160"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008964 - phosphoenolpyruvate carboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA];
                     GO_process: GO:0015977 - carbon fixation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HEX2816947.1"
                     /translation="MATSMPDQLRATIRFLGRVLGDVIRAEDGQAVFNQIEEIRQASV
                     AFHREGTPKAAKVMAERLEGLSLPDTVRFAHSFACFLQITNIAEDEIQRRRGRAGDAR
                     NDTLAGALRSLKADGVGTEAVVELLRHALIAPVITAHPSEVRRKSVLDRVGTISDGLD
                     AYDHARTDAERRIIELRLVRQVSIFWRTRQLRPVKPGVKDEIENAVSYFERSFLPELP
                     LLYAHWLEVLGQPKDLTSFLRVGSWVGGDRDGNPFVTADVMREAMRWQSRAALRVYLD
                     QIHALGAELSVSARLAAVTPELQALADAAGDTSLQRADEPYRQALTGVYARLAATYPA
                     LTGEPPMRAAATTAPPYGSPDELKADLETVLASLIAEHGPAFAYGDLPYLIRQVDTFG
                     FHLARLDMRQNSSVHERTTAELLRTAGVCPDYRALDEPARIALLVGELGHGRLLHSPY
                     ETYSEETTREFDILHTAAQVKQLYGRDAIRAYIVSNTTSVSDLLEVYLLLKEVGLFTP
                     GEAPRTQIFAEPLFETIGDLRAAPETLKAYLALPLIRQLVEPIGIQEVMIGYSDSNKD
                     GSYLTSTWELYKTSRALASVAKDEGLRLQLFHGRGGAVGRGGGSTYDAILAQPQGTVN
                     GRIRITEQGEVVANKYADPELARQSLETITAGVVLASLRKAPPADVTGPRGEAMDALS
                     AKAMGAYRALVYETPGFVDYFYGATPISEIADLNIGSRPTSRQATRSIGGLRAIPWVF
                     SWAQSRAMLPGWYGFGAAVRDGGVEIAALRDLYDSWPFFSSALANMEMVLAKADIAIA
                     GRYAGLVEDRTLADHVFGQIKAEWERTNEALLSITGQSVLLDKDPDLAAAIRGRLPYI
                     DPLNHLQIELIRRRRRGDTDEAVKEGIHLTINGVAAGLRNTG"
     gene            3658..4803
                     /locus_tag="VHN39_11165"
     CDS             3658..4803
                     /locus_tag="VHN39_11165"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEX2816948.1"
                     /translation="MPRTRRDYLKLSAAASGLALAAGSARAAKAPKTLRILILGGTGF
                     IGPHEVRYALSRGHEVTIFNRGRQPQEWPGHVEELLGDRNTGDLKSLEGREWDVCIDN
                     PTTLPVWVRDAGRVLKGKVKHYVFISTISVYADNDKPADETAALAVYKGPDAMAETAK
                     AVAASPALYGQLKALSEAEARLQFGEAATAIIRPGLIVGPGDETDRFTYWPVRLANPG
                     GQWGGEVLAPGDGADPVQFVDARDLAEWIVRMAESGTPGLFNGTGPARPLLMRDFLKS
                     VAAGVHANPKLTWVSTRFLEDHKVQAWSDQPVWVPGQGETMGFHRRSISRALKAGLTF
                     RPLTETAADTLAWFKTLPADRQAKLRSGLKPERETALLAEWKTSAKA"
     gene            4827..>5495
                     /locus_tag="VHN39_11170"
     CDS             4827..>5495
                     /locus_tag="VHN39_11170"
                     /inference="COORDINATES: protein motif:HMM:NF017745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEX2816949.1"
                     /translation="MRIWPVAALGLVLLVVAPALAETRNAADAKFQALYKREWAWRRV
                     EFPGRDQEGSRLPDRFPKVDAASQARRLAYWRDVRRSLDAIPVTSLSAQEAVNYEVYA
                     DQLDTLINQQTFREYEKPFNSDSSFWSGLGFTASRTFHTTQDYRNYIAQLNDIPHYFH
                     DETENMRAGLKRGFTPPRATLVGREVSVTAVADAKGAEATNLWKPFKAMPAAVPPAEQ
                     EALRA"
BASE COUNT          882 a         1947 c         1879 g          787 t
ORIGIN      
        1 gtctcgatcc gctcgcgcca gatccgccag ccctcgccag ccatcaagag gccattgggg
       61 gcgaagctgt cgtccagcgc cttgggcggg cggaccatct ggacggtgac gccggtcttg
      121 cgcagccgat ccagcgcggc gaggtagagg cggccgacat cggggtttag atcgcccagg
      181 tgctccagcg gaatggcggc cagccggcgg ccctcgacct cggcagccag cgccgcctcg
      241 gcgtcgaagg ccccacgcgt ggcggtcttg ccgtcagggc cggagatcac ccccagcatg
      301 cgcgcggcgg tggcgacgtc cctggcgagc gcgcccactg tatccagcgt cggggccagc
      361 ggatggacgc cctgcaggct gacgaggccg cggccaggct tcagccccac cacgccgcac
      421 gtgctggccg ggatacgcac cgagccgccg gtgtcgctgc ccagcgcggc atccacgagg
      481 cccgccgcca cagccactgc tgatccggag gacgagccgc ccggcgcgcg atgcgccttg
      541 gcgtcccagg ggttccaggg cgcgcccacc gcgcggttgg tgccccagcc gccataggcc
      601 agctcgacag tctgggtctt gcccaccgcg cgccagccgg cgtcgagcag cttctgaacg
      661 accagggcat gggcgaccgg attctcggcc agcgggacct tggccccacc gccggtgggg
      721 acgcccttga cgtcgaagag gtccttgatc gcaaaggccg gcccgtcgcc gtcgcccagc
      781 gccgggtcga acacccgtac gaaggccttc aggcgtccgt cgtagcgatg gatgcgggcg
      841 agcgcctcgt cgggggacat gagcttcctt tgtggaagga cgactaacac ggttccggat
      901 ggaaaccaga tgacgcgcgc cgctcgctgt ggcttttcct gaaggccatg gccacttcga
      961 tgcccgacca gcttcgcgcc accatccggt tcctgggccg ggtgctgggc gacgtgatcc
     1021 gcgccgagga cggccaggcg gtgttcaacc agatcgagga gatccgccag gcctctgtcg
     1081 ccttccaccg cgagggaacg cccaaggccg ccaaggtgat ggctgagcgc ctggagggcc
     1141 tcagccttcc cgacaccgtg cgcttcgccc actccttcgc ctgcttcctg cagatcacca
     1201 acatcgccga ggatgagatc cagcgccgcc ggggtcgggc cggcgatgcg cgcaacgaca
     1261 ccctggccgg cgcgcttcga agcctgaagg ccgatggcgt cggcacggag gcggtggtcg
     1321 agctgctgcg ccacgccctg atcgcgccgg tgatcacggc ccatccgagc gaggtgcgcc
     1381 gcaagagcgt gctcgaccgc gtggggacca tctccgacgg cctcgacgcc tacgaccacg
     1441 cccggacgga cgccgagcgg cggatcatcg aactgcgcct ggtccgccag gtctcgatct
     1501 tctggcgcac gcggcagctc cgccccgtga agcccggggt gaaggacgag atcgagaacg
     1561 ccgtctccta tttcgagcgc agcttcctgc cggagctgcc gctgctctac gcccactggc
     1621 tggaggtgct gggccaaccc aaagacctga ccagcttcct gcgcgtcggc tcgtgggtgg
     1681 gcggcgaccg cgacggcaat cccttcgtca ccgccgacgt catgcgcgag gccatgcgct
     1741 ggcagtcgcg cgccgcgctt cgggtctatc tcgaccagat tcatgcgctg ggcgcggagc
     1801 tttccgtctc ggccaggctg gcggcggtga cgccggagct gcaggccctg gccgatgcgg
     1861 ccggtgacac ttcgctgcaa cgcgccgacg aaccctatcg ccaggcgctg accggggtct
     1921 atgcccgcct ggccgccacc tatccggcgt tgacgggcga gccgccgatg cgcgcggcgg
     1981 cgacgaccgc gccgccctac gggagccccg acgagctgaa ggcggacctg gagacggtgc
     2041 tggccagcct catcgccgag cacggcccgg cgtttgccta cggcgacctg ccgtacctga
     2101 tccgccaggt cgacaccttc ggcttccacc tggcgcgcct ggacatgcgc cagaactcct
     2161 cggtccacga gcggacgacg gccgagctgc tcaggaccgc cggcgtctgc cccgactaca
     2221 gggccctcga cgagccggcg cgcatcgcgc tcctggtggg ggagctcggc catggccgcc
     2281 tgctgcactc gccctacgag acctacagcg aggaaaccac gcgggaattc gacatcctgc
     2341 acaccgcggc ccaggtgaag cagctctacg gccgtgacgc gatccgggcc tatatcgttt
     2401 cgaacaccac ctcggtctcc gatctgctgg aggtctatct cttgctgaag gaggtgggcc
     2461 tgttcacgcc cggcgaggcg ccgcgcaccc agatcttcgc cgagccgctg ttcgaaacca
     2521 tcggcgacct gcgcgcggcg cccgagacgt tgaaggccta tctcgcgctg ccgctgatcc
     2581 gccagctggt ggaaccgatc ggcatccagg aagtgatgat cggatattcg gactcgaaca
     2641 aggacggcag ctacctgacc tcgacctggg agctctacaa gacctcccgc gcgctcgcct
     2701 cggtcgccaa ggatgaaggg ctgcggctgc agctgttcca cggccgcggc ggggcggtgg
     2761 gacggggcgg cgggtcgacc tatgacgcca tcctggccca gccccagggc accgtgaatg
     2821 gccgcatccg gatcaccgaa cagggcgagg tggtggccaa caaatacgca gacccggagc
     2881 ttgcccgcca aagcctggag accatcactg ccggcgtggt gctggcgtcc ctgcgcaagg
     2941 ccccgcccgc cgacgtcacc ggcccgcggg gcgaggccat ggacgcgctc tccgccaagg
     3001 cgatgggagc ctatcgggcg ctggtctacg agaccccggg cttcgttgac tacttctatg
     3061 gcgcgacccc gatcagcgag atcgccgacc tcaacatcgg cagccggccg acctcgcgtc
     3121 aggcgacccg gagtatcggg ggcttgcggg ccatcccctg ggtgttctcc tgggcccaga
     3181 gccgcgccat gctgcccggc tggtacggct tcggcgcggc ggtccgcgat ggcggggtgg
     3241 agatcgcagc gctcagggac ctgtacgaca gctggccgtt cttctcctcg gctctggcca
     3301 atatggagat ggtgctggcc aaggccgaca tcgccatcgc cggacgctat gcgggcctgg
     3361 tggaggaccg cacgctggcc gaccacgtct tcggccagat caaggccgag tgggagcgga
     3421 ccaacgaggc cctgctctcg atcaccggcc agagcgtcct gctggacaag gaccctgacc
     3481 tggccgccgc catccgtggc cggttgccct acatcgaccc gctcaaccac ctgcagatcg
     3541 agctgatccg ccgccgccgc cggggcgaca ccgacgaggc ggtgaaggaa ggtatccacc
     3601 tgaccatcaa cggcgtggcc gcgggcctgc ggaacacggg ctaggggaaa gacgacgatg
     3661 ccaaggaccc gccgggatta tctgaagctg tcggccgccg cgtccggcct cgcgttggcc
     3721 gcaggctcgg cgcgcgccgc caaggcgccg aagacgctgc gcattctgat cctcggcggc
     3781 accggcttca tcgggccgca tgaggtgcgc tacgcgctct cgcgcggaca cgaggtgacg
     3841 atcttcaacc gcggcaggca gccccaggag tggcccggcc acgtggagga gttgctcggc
     3901 gaccgcaaca ccggcgacct gaagtcgctg gagggccgcg aatgggacgt ctgcatcgac
     3961 aatcccacga ccctgccggt ctgggtccgc gacgcgggtc gggtgctgaa gggcaaggtc
     4021 aaacactacg tcttcatctc aacgatctcg gtctacgccg acaacgacaa gccggccgac
     4081 gaaaccgcgg cgctggcggt ctacaagggc cccgacgcca tggccgagac tgccaaggcg
     4141 gtggccgcca gtcccgccct ctacggccag ctgaaggcgc tcagcgaggc cgaggcgagg
     4201 ctgcagttcg gcgaggcggc cacggcgatc atccgcccgg gcctgatcgt cgggccgggc
     4261 gacgagaccg accgcttcac ctattggccg gtgcggctgg ccaatcctgg cggccaatgg
     4321 ggcggagagg tgctggcgcc cggcgacggc gccgatcccg tgcagttcgt cgacgcccgc
     4381 gacctggcgg agtggatcgt gcgcatggcc gagagcggga cgccgggctt gttcaacggg
     4441 acggggccgg cacggcccct gctcatgcgc gatttcctga aaagtgtggc ggccggtgtt
     4501 cacgccaatc ccaaactgac ctgggtctcg accaggttcc tggaggacca caaggtccag
     4561 gcctggagcg accaaccggt ctgggtgccg gggcagggcg agacgatggg tttccaccgg
     4621 cgcagcatca gtagggcgct caaggcgggc ctgaccttcc gcccgctgac ggagaccgcg
     4681 gccgacaccc tggcctggtt caagaccctg ccggcggacc gtcaggcgaa gctgcgctcg
     4741 ggcctgaagc cagagcgcga aacggccttg ctggccgagt ggaagacgag cgccaaggcg
     4801 tgaacggatc tttgggggac aaccgaatgc gcatctggcc cgtggccgcc cttggcctgg
     4861 tgctcctggt cgtcgccccg gcgttggctg agacgcgcaa cgccgccgac gccaagttcc
     4921 aggcgctcta caaacgcgag tgggcctggc gcagggtcga gttccctgga cgtgaccagg
     4981 agggctccag gctgcccgac cgcttcccca aggtcgacgc ggccagccag gcgcggcgcc
     5041 tcgcctattg gcgcgacgtc cgcaggagcc tggacgccat ccccgtgacc agcctctcag
     5101 cccaggaagc ggtgaattac gaagtctacg ccgaccagct cgataccctg atcaaccagc
     5161 agacgttccg cgagtacgag aagccgttca actcggactc ctccttctgg tcggggcttg
     5221 gctttacggc gtcccggacc ttccacacca cccaggacta ccggaattac atcgcccagc
     5281 tgaacgacat cccgcactac ttccacgacg agacggaaaa catgcgcgcc ggcttgaagc
     5341 gcggcttcac cccgccacgc gcgacgctgg tgggccgtga ggtctcggtc accgccgtcg
     5401 cggacgccaa gggcgcagag gcgacgaacc tgtggaagcc gttcaaggcc atgccggccg
     5461 cggtgccccc ggccgagcag gaggcgctgc gggcc
//
LOCUS       DATAJL010000583         2990 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36064,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000583 DATAJL010000000
VERSION     DATAJL010000583.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36064"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1612)
                     /locus_tag="VHN39_11175"
     CDS             complement(<1..1612)
                     /locus_tag="VHN39_11175"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEX2816950.1"
                     /translation="MRTILPGLAAALALSSPLTASAAAPAPAPADLVIWGGPIYTAVD
                     ARPKVEAVAVSHGRIAFAGTHAGAKALVGPKTKVIDLAGSALFPGFTDSHAHLREIGE
                     RELTLNLEGSKSAAEAAQRLKAYIAANHPRGFVYGRGWIETGWPEGRFLDKTDIDAIA
                     PDTPVILQRADGHAMTVNSAALKAARIDGTTAAPDGGQILKGPDGAPTGMLVDNAMGL
                     VRPLMGAPTREQRLAQFKAGFKVETEYGWTGVHYMSVAMDDVPLMEEMDRQGLATLRV
                     YDMVDAAEAGPLFASGPRATPDGRITTRGIKLYMDGALGSRGAALFEPYSDAPGLKGT
                     FITDPKVMAGYMDKALAKGIQVSTHAIGDRGNATALDLYEQAFKADPAAGNAARWRIE
                     HAQILRPADIPRFKADSVIASMQPSHAIGDFHFAPARLGKDRLKGAYAWKSLLNSGAV
                     VVGGSDAPVERGAPLIEFYAAVARKDLQGFSNADWHPEEKLSRTEALRLFTSSAAYAR
                     FAEKDLGTISVGKRADFSGFSVDLMTAPE"
     gene            complement(1671..1865)
                     /locus_tag="VHN39_11180"
     CDS             complement(1671..1865)
                     /locus_tag="VHN39_11180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816951.1"
                     /translation="MSRDRRIELLVAVALALGTAIGVVLARGSGSPIGATFLAGMGAG
                     AVATYVAMTNAVIARSKQRA"
     gene            complement(1862..1999)
                     /locus_tag="VHN39_11185"
     CDS             complement(1862..1999)
                     /locus_tag="VHN39_11185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816952.1"
                     /translation="MTLTRWIVALAVAGLMMAMALAGAAHACGTAGDRVAAMTTIRDV
                     K"
     gene            complement(2008..>2990)
                     /locus_tag="VHN39_11190"
     CDS             complement(2008..>2990)
                     /locus_tag="VHN39_11190"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HEX2816953.1"
                     /translation="AGGRGSSHAQRAQAPLTHRQGSFHMNWTRRSLLVAGAAGAAGLS
                     LTPSLSWAAKDADVYPFWEVRKGNARVYLFGDGGSVTDPWSSPRIEAAFDASAVFWKE
                     TPDTPADRAKVIAAGVDRARPLSTWLTAEQKERVAAAAVNAGTTYAALEPVKPWLAAL
                     VMSSAYSQKKAALPGPRAPGEAAASDPIAVLTARAKAAGKPIRTEYPDQDSLLAWAVA
                     MSPQAQVEYLLYIIENNEQPSEHMAQRKREWAVGDMAPETREVARIKQAYPNLFEPLD
                     GERNRGWPPRVRKMLDDGGTSFVLVGCDHLLGPDSVLAQLAKAGLPARRI"
BASE COUNT          410 a         1054 c         1046 g          480 t
ORIGIN      
        1 cctccggggc ggtcatcagg tcgacggaaa agcctgagaa gtcggcgcgc ttgccgacgc
       61 tgatcgtgcc caggtccttt tcggcaaacc gtgcgtaggc cgcggacgac gtgaacagcc
      121 tcagcgcctc ggtccgggag agtttttctt cgggatgcca gtcggcgttg gagaagccct
      181 gcaggtcctt gcgcgccacc gccgcataga actcgatcag gggcgccccg cgctccacgg
      241 gcgcgtccga gccgcccacg acgacggcgc ctgagttcag caggctcttc caggcatagg
      301 cgcccttcag ccgatccttc ccgaggcgcg ccggggcgaa gtggaagtcg ccgatggcgt
      361 ggctgggctg catcgaggcg atcacgctgt cggccttgaa gcgcggaatg tcggccggcc
      421 gcaggatctg ggcgtgctcg atccgccagc gcgcggcgtt gccggccgcc ggatcggcct
      481 tgaacgcctg ctcgtagagg tcgagcgccg tcgcattgcc ccggtcgccg atggcgtggg
      541 tcgagacctg aatgcccttg gccagcgcct tgtccatata gccggccatc accttcggat
      601 cggtgatgaa ggtgcctttc agccccggtg cgtcggagta gggctcgaac agggccgccc
      661 cgcgcgaacc gagcgcgccg tccatgtaga gcttgatccc gcgcgtggtg atgcggccgt
      721 ccggcgtggc cctgggcccg ctcgcgaaca gcggcccggc ctcggcggcg tcgaccatgt
      781 cgtagacccg aagggtcgcc aggccctgcc tgtccatctc ttccatcagc ggcacgtcat
      841 ccatcgcgac gctcatgtag tggacgccgg tccagccgta ctcggtctcg accttgaacc
      901 cggccttgaa ctgcgccagc cgctgctcgc gggtcggcgc gcccatcagc ggccggacca
      961 ggcccatggc gttgtcgacc agcattccgg tgggcgcgcc gtcgggacct ttcaggatct
     1021 ggccgccgtc gggcgcggcg gtggtcccat cgatgcgcgc ggccttcaag gctgcggagt
     1081 tgacggtcat ggcgtggccg tcggcccgct gaaggatgac cggtgtgtcc ggcgcgatgg
     1141 cgtcgatgtc ggtcttgtcg aggaagcggc cttcaggcca gccggtctcg atccagcccc
     1201 ggccatagac gaaacccctg ggatggttcg ccgcgatata ggccttgagg cgctgggccg
     1261 cctcggcggc ggatttggag ccttccaggt tgagcgtcag ctcccgttcc ccgatctcgc
     1321 gcaagtgggc gtggctgtcg gtgaagccgg ggaacagcgc cgaacccgcc aggtcgatga
     1381 ccttggtctt gggccccacc agggccttgg cgccggcgtg ggtcccggcg aatgcgatcc
     1441 gtccgtggct gaccgccacg gcctcgacct tggggcgggc gtcaacggcg gtgtagatcg
     1501 gcccgcccca gatcacgagg tcggccggag ccggagccgg agcggctgcg gacgcggtca
     1561 gcggacttga gagggcgagg gcggcggcga ggccaggcag gattgtgcgc atgcggccta
     1621 gctagccgtc cgcggacgtc gccgcaaagg cctttgggcc gaacggtcgc tcaagcgcgc
     1681 tgtttcgacc gggcgatcac cgcattggtc atggccacgt aggtcgccac cgcgcctgcg
     1741 cccatcccgg ccaggaaggt cgccccgatc ggcgagccgg agcccctggc cagcaccacc
     1801 ccgatcgccg tgcccagcgc cagggcgaca gccaccaaga gttcgatcct gcggtcccgg
     1861 ctcatttcac atctcgtatt gtggtcatgg ccgcgaccct atcgcccgcc gtcccgcagg
     1921 catgggccgc gccggccagg gccatggcca tcatcagccc ggccacggcc agcgccacga
     1981 tccatcgggt gagcgtcatc gccatcatca gatcctccgc gccggcaggc ccgccttggc
     2041 gagctgcgcg agaacgctgt cggggcccag caggtggtcg caacccacca gcacgaagct
     2101 agtcccgccg tcgtccagca tctttcggac gcgcggcggc cagccgcgat tgcgctcgcc
     2161 gtccagcggt tcgaacagat tgggataagc ctgcttgatg cgcgccacct cacgggtctc
     2221 cggcgccata tcgccaaccg cccactcccg cttgcgctgg gccatgtgct cgctcggctg
     2281 ctcgttgttc tcgatgatgt aaagcaggta ttcgacctgg gcctggggcg acatggcgac
     2341 cgcccaggcg agcaaggagt cctgatcggg gtactcggtg cggatcggct tgcccgccgc
     2401 cttggcccgc gcggtcagca ccgcgatggg atcggaggcc gccgcctcgc cgggcgcccg
     2461 cgggccgggc agggcggcct tcttctggct gtaggcgctg ctcatcacca gggcggccag
     2521 ccagggcttc accggctcca gcgccgcgta ggtggtcccg gcgttgaccg ccgcggccgc
     2581 cacccgctcc ttctgctccg ccgtcagcca ggtcgacagc ggccgggcgc ggtcgacgcc
     2641 ggcggcgatc accttggccc ggtcggcggg tgtgtcgggc gtctccttcc agaacaccgc
     2701 gctcgcgtcg aaggccgcct cgatgcgcgg cgaggaccag gggtcggtca ccgacccgcc
     2761 gtcgccgaac aggtagaccc tcgcgttacc cttgcgcacc tcccagaagg gatagacgtc
     2821 cgcgtccttc gccgcccagg agagcgaggg ggtgagcgac aggccagccg ctcccgccgc
     2881 gcctgccacg agcaggcttc gtctggtcca gttcatgtgg aagctccctt gtcggtgagt
     2941 tagcggcgct tgcgcacgtt gggcgtggct ggagccgcgg ccgccggcgc
//
LOCUS       DATAJL010000584         1686 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36081,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000584 DATAJL010000000
VERSION     DATAJL010000584.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1686
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36081"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VHN39_11195"
     CDS             complement(<1..335)
                     /locus_tag="VHN39_11195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816954.1"
                     /translation="MNVAKCLIGLAAALNAASATAVDLSPGRWPAAQRAELQQREFFF
                     PPAFAGPVDGAKILVTGTVSPVAVHAGAEALRHGGSAADAAATVALTQIATDLGSVVS
                     YAGEMQLVY"
     gene            complement(422..1234)
                     /locus_tag="VHN39_11200"
     CDS             complement(422..1234)
                     /locus_tag="VHN39_11200"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2816955.1"
                     /translation="MTSFTSDGVQIAYDDISPPAHAGEGGAKRTIVLIHGFASNRNEG
                     WKRTGWYTAFERRGFRVIALDQRGHGESQKLYEPQAYERERLAADVLTLMDHLGVERA
                     EMFGYSMGTRVALEAAIASPDRISHLILGGVGEKLLEPHPHVVGEPMADAMLADDPTT
                     IKDPMLRSFRQFADEQGEDRKALAALTRVKNMPLNREAMAELPMPVLVVAGQGDEGAG
                     DPEGLARIFPHGHGVTIPGCDHFSAIPHALTKAAVFDFLDGLIGEDEFPPFE"
     gene            complement(1267..>1686)
                     /locus_tag="VHN39_11205"
     CDS             complement(1267..>1686)
                     /locus_tag="VHN39_11205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007664931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HEX2816956.1"
                     /translation="APAEGYSGKVIQLRAGALAAWRQMAAAARAEDPRIAADPRVLTI
                     FSGFRSPEADDARCAGEGNCNNRVRATCSAHRTGLAMDLYVGQAPGLGPDSSADPNRL
                     FMSKTPAYRWLVAHADRYGFVPYPFEPWHWEWTGEAP"
BASE COUNT          247 a          570 c          620 g          249 t
ORIGIN      
        1 aaatagacca gctgcatctc gccggcgtag gagacgaccg agccgaggtc ggtggcgatc
       61 tgggtcaggg ccaccgtggc ggcggcgtcc gcggcgctgc cgccgtggcg cagcgcctca
      121 gcgcccgcgt gcaccgcgac cggcgacacc gttccagtca ccaggatctt cgcgccgtcc
      181 accggtccgg cgaaggccgg agggaagaaa aattcgcgct gctgcagttc agcgcgctgg
      241 gccgccggcc agcgccccgg cgacaggtca acggcggtcg ccgaggcggc gttgagcgcg
      301 gccgccaggc cgatcaaaca cttcgcgacg ttcatcgtga ccgcatccac ccgccggccg
      361 cccccagccc aggcgcgatc aagctccgcc ggaattgggg cgacactctg tcggcgcgcg
      421 cctactcgaa gggcgggaac tcgtcctcgc cgataaggcc gtcgagaaaa tcgaagacgg
      481 cggccttggt gagcgcgtgg gggatcgccg agaagtggtc gcagcccggg atcgtgacgc
      541 cgtggccgtg cgggaaaatc cgcgccagac cctccggatc gccggctccc tcgtcgccct
      601 ggcccgccac caccagcacc ggcatcggca gctcggccat ggcctcgcga ttgagcggca
      661 tgttcttcac ccgcgtgagc gccgccagcg ccttcctgtc ctcgccctgc tcgtcggcga
      721 actggcggaa ggacctgagc atcgggtctt tgatggtggt ggggtcgtcg gccagcatgg
      781 cgtcggccat gggctcgccg accacgtggg ggtgcggctc caggagcttt tcgcccacgc
      841 cgcccaggat caggtgcgaa atccggtcgg gcgaggcgat cgccgcctcc agcgccaccc
      901 gcgtgcccat ggagtagccg aacatctcgg cgcgctcgac gcccaggtgg tccatgagcg
      961 tgagcacgtc ggcggccagc cgttcgcgct cataggcctg gggctcatag agcttctggc
     1021 tctcgccgtg gccgcgctgg tcgagcgcga tcacccggaa tccccggcgc tcgaaggcgg
     1081 tgtaccagcc ggtgcgcttc cagccttcgt tgcggttgga ggcgaagcca tggatcagga
     1141 cgatggtgcg cttggccccg ccttcaccag cgtgggcggg cgggctgatg tcgtcatagg
     1201 cgatctggac gccgtcggat gtgaagctgg tcatggatgc gaacctaggg gtctggtgag
     1261 cagggctcaa ggcgcttcac cggtccactc ccaatgccag ggttcgaagg gataggggac
     1321 gaagccgtag cggtcggcgt gggcgaccag ccagcggtag gcgggcgtct tgctcatgaa
     1381 caggcggttg gggtcggcgc tggaatcggg gccaaggccc ggcgcctggc cgacgtagag
     1441 gtccatggcc aggccggtgc ggtgggccga gcaggtcgcc cggaccctgt tgttgcagtt
     1501 gccctcgccg gcgcagcggg cgtcgtcggc ctcggggctg cgaaacccgg agaagatggt
     1561 caggacccgc ggatcggcgg cgatccgcgg gtcctcggcg cgggcggcgg cggccatctg
     1621 gcgccaggcg gccagggcgc cggcccgaag ctggatcacc ttgcctgagt aaccctccgc
     1681 cggcgc
//
LOCUS       DATAJL010000585         1815 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_22870,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000585 DATAJL010000000
VERSION     DATAJL010000585.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1815)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1815)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1815
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_22870"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            213..860
                     /locus_tag="VHN39_11210"
     CDS             213..860
                     /locus_tag="VHN39_11210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816957.1"
                     /translation="MASVGAIMRRRVAAGLAICALALSGLARARPGPDDANTVSELVV
                     TALRSVSELLVTAPVKCIRSPTAPSGKWESRPKIVSTFPAKGDVVRPGLLIVRVTFDQ
                     KMVCDGGFDESPPLKYPTGPDPPHMLLSYDRQTIRTICYVGPNGHYGGVINPRTPYGP
                     FKNLAGVPAEEYAFDFTTSTGPPIKTACDALMEDAATAHDIVDRGKHYCGPPKDE"
     gene            complement(871..1566)
                     /locus_tag="VHN39_11215"
     CDS             complement(871..1566)
                     /locus_tag="VHN39_11215"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2816958.1"
                     /translation="MPAKGMGETVQLASARDGFQLDVYRAPVSDARRGGLVILHAIWG
                     VTPHLRALADEYAEAGYEVLVPSLFDRFQKGFAERDFDPALMARQLGFGAETRWGVDV
                     LDAVQAAIDALAPPVFAMGFCYGGTVAWLAAARCHGLAAVSSFYGGQIIDYLAETPQI
                     PTILHLGKLDELTPPADVEAIRAAHPDLPVFMYEAGHAFVAPNGFHEDSARLSKLRTL
                     AHFSRNSGVRGEI"
     gene            complement(1575..>1815)
                     /locus_tag="VHN39_11220"
     CDS             complement(1575..>1815)
                     /locus_tag="VHN39_11220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2816959.1"
                     /translation="VKANAALTPACPVIVHLGRTDPGIPADEVAAAVAEYNPDVPVYI
                     YEGAGHGFNNESPERYNAEASDLARHRTLELFDKA"
BASE COUNT          285 a          570 c          688 g          272 t
ORIGIN      
        1 gcggcctcgc ccgcgagcgc ggggctcgcg aggagcgcga ggagcgcggc gagggggagg
       61 gcggagcgag tcacgtggcg atgacgggag cataacagaa ggtccgcccc ctgaccttga
      121 ggcgtgcgcc gttacggatg cttttcatgg ccgcggcgcg ggcttatgga atcactatgc
      181 gcgcggaccg cgcggcgagg gggacagcgc ggatggcgtc tgtcggcgcg atcatgaggc
      241 gcagggtggc ggcgggtctg gcgatctgcg ccctggccct ttccggcttg gcccgggccc
      301 gacccgggcc cgacgacgcc aatacggttt ccgaactggt ggtgacggcc ctcaggagcg
      361 tttcggaact gctggtgacg gcgcctgtca aatgcatccg ttcgcctacg gcgccgagcg
      421 gcaaatggga gtcccgtccc aagatcgtca gcacatttcc cgccaagggc gatgtggtgc
      481 ggccggggct gttgatcgtg cgggtgacct tcgatcagaa gatggtctgc gatggcggct
      541 tcgatgagtc gccgcctctg aagtatccga ccggtccgga cccaccccac atgctgttga
      601 gctacgaccg gcagacgatc cggacgatct gctacgtcgg gccgaatggc cactacggcg
      661 gagtgataaa ccctcgcacg ccttacgggc cgttcaagaa cctggccggc gtgccggccg
      721 aggaatacgc cttcgacttc accacctcga cagggccgcc gatcaagacg gcctgcgacg
      781 ccctgatgga ggacgcggcc accgcccacg acatcgtgga ccgcggaaag cactattgcg
      841 ggccgccgaa ggacgaatga agcgccgcgc ctagatctct ccgcgcacgc cgctgttccg
      901 gctgaagtgc gccagcgtcc gcagcttcga cagccgcgct gagtcctcat gaaacccgtt
      961 cggcgccacg aaggcgtggc cggcttcgta catgaagacc ggcaggtcgg ggtgggcggc
     1021 gcggatggcc tcgacgtcgg cgggcggggt cagttcgtcg agcttgccca ggtgcaggat
     1081 ggtggggatc tggggcgtct cggccaggta gtcgatgatc tggccgccgt aaaaggacga
     1141 gacggcggcg aggccgtggc aacgggcggc ggcgagccag gcgaccgtgc cgccgtagca
     1201 gaagcccatg gcgaagaccg gcggagccag ggcgtcgatg gcggcctgga cggcgtcgag
     1261 gacgtcgacg ccccaacggg tctcagcgcc gaagcccaac tggcgggcca tcagggcggg
     1321 gtcgaagtca cgctcggcga agcctttctg gaaccggtcg aaaaggctcg ggaccaggac
     1381 ctcgtagccg gcctcggcat actcatcggc cagcgcgcgc aggtgcgggg tgacgcccca
     1441 gatggcgtgc aggatgacga ggccgccgcg ccgggcgtcg ctgacgggcg cgcgatagac
     1501 gtcgagctgg aagccgtccc tggcgctcgc gagctggacg gtctcgccca tcccttttgc
     1561 cggcatgggg cgcctcaggc cttgtcgaac agctcgaggg tgcggtggcg ggcgaggtcg
     1621 gaggcctcgg cgttgtagcg ttcggggctc tcgttgttga agccgtggcc ggcgccctcg
     1681 tagatgtaga cgggcacgtc cgggttgtac tcggcgaccg cggcggcgac ctcgtcggcg
     1741 gggatacccg ggtcggtgcg gcccaggtgg acgatcaccg ggcaggccgg ggtgagcgcg
     1801 gcgttggcct tcacc
//
LOCUS       DATAJL010000586        10542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_48875,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000586 DATAJL010000000
VERSION     DATAJL010000586.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 10542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10542
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48875"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1762
                     /locus_tag="VHN39_11225"
     CDS             <1..1762
                     /locus_tag="VHN39_11225"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2816960.1"
                     /translation="VSETFHQAGGKAEWLDSTGKGAATVTKPGLYVSQAGSPWGDAII
                     ARQLLKAPGMTLPALPGGTLRLEKGESLTVKGAGGPLSVTRYDLTGIDLTPTTLLLDA
                     KGQMFAEVDDSSIIVRKGYEGEEVRLRKFAADWSSARFVNMEKQVAHRYAGPVRIKNV
                     RLFDPKTSSLTGPVSVVMRGKEIAAVETLDNPATPGEVTIDGAGGTLVAGLYEMHAHL
                     GQDGALLNLIAGITTVRDMGNDNAVLDELVRRMDSGEIGGPHVIRSGFIEGKSPYSAN
                     NGILVDNQQAAIDAVRWYGARGYWQIKIYNSMNPAWVPAMVKEAHGLGMRVAGHVPAF
                     STADDMIVAGYDEMTHINQFMLGWVMIPGEDTRTLFRLTALKRLPGLDLSSPKVQHTI
                     QMMVDGGKAIDPTLGIHEQLTQNRDGQVPPGAVDYLDHMPIGYRRGAMKAWVDTSAPG
                     DDKAYREAFEQILRTTKMLHDRGVFIVFGTDTGGSFTYHRELELYQRAGFTPAEIVKR
                     ATYDSAKYTGQDQRMGSIEKGKLADFFLIPGDPTKDLKAIKTIRMVVKDGAIYYPSEV
                     YPHFGIQPFATAPTVTEPKG"
     gene            complement(1921..2439)
                     /locus_tag="VHN39_11230"
     CDS             complement(1921..2439)
                     /locus_tag="VHN39_11230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016846 - carbon-sulfur lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2816961.1"
                     /translation="MKTPVTALPKVGPKASAVQAAGACVCGAVLLEIDVPAVWAWHDH
                     SARSRQAQGCAYATYVGSWKSRFRILRGEKHLTRFEDAQAGTVRSFCARCGTPMLYER
                     ARSPKMVNIPRAVFTERTGREPRYHMNLAEQADWTWAGEPLAPLKGYPGVMRERPRKK
                     TRSAPLDPMFEP"
     gene            complement(2489..2686)
                     /locus_tag="VHN39_11235"
     CDS             complement(2489..2686)
                     /locus_tag="VHN39_11235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816962.1"
                     /translation="MSAMNVKVFKEDAGWFVMTDSKMGPYPRGVAESLAKGMAFAIRS
                     SGGQARIVFSDSDEPWSDDEE"
     gene            2877..3566
                     /locus_tag="VHN39_11240"
     CDS             2877..3566
                     /locus_tag="VHN39_11240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2816963.1"
                     /translation="MIPTATPATAIPATTGGRRDFIVANTRLQRPPHAPEIQLYLADE
                     ITPIWKLTEEALEEIGLPPPFWAFAWAGGQALARYLIDNPETVAGRRVIDFASGSGLV
                     GIAAMMAGARDVLCADIDAYGEAAVALNAAVNGVACAFTAKDLLDAPAPGWAEVILAG
                     DICYEKPLAERVLAWLAAARAAGATVLIGDPGRSYFPRSGLTRLAEYQVPTTRELEDM
                     AVKKTCVWALP"
     gene            3563..4402
                     /locus_tag="VHN39_11245"
     CDS             3563..4402
                     /locus_tag="VHN39_11245"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX2816964.1"
                     /translation="MSGVPTLVFALVLGSALLHATWNVLLRSGADRLWSITVMSLVSG
                     LAAAIAVWFLPAPAVASWPFAAVSGVLQVGYCLFLVWAYEKGELSQVYPIARGAAPLL
                     VAVGAAVFAGERLSPAAMGGLVLVSSGIIGLSLGRQRLNTHATVLALASGGFIAGYMV
                     CDGMGVRLSGQPFGYFAWMSLAQAAPMPFAYFALRRRWPAMGLDRETAKAIGGGLISI
                     VAYGVVVWAMAGAQMAKVSGLRETSILFAAILAALFLKERFTLRRGLCAGLISLGAVL
                     LAG"
     gene            complement(4399..4827)
                     /locus_tag="VHN39_11250"
     CDS             complement(4399..4827)
                     /locus_tag="VHN39_11250"
                     /EC_number="1.11.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004601 - peroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA];
                     GO_process: GO:0006972 - hyperosmotic response [Evidence
                     IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0033194 - response to hydroperoxide
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEX2816965.1"
                     /translation="MIRKANAVWRGTGRDGAGDLTTASGVLASTPYSYKTRFEDQPGT
                     NPEELLAAAHAGCFTMALAFALQQAGLTPLELRTEAAVSLDPADGGGFRISKSALTLR
                     ARIPGIDDMKFQELAKGAEQNCPVSKVLNAEITLDAQLES"
     gene            complement(4881..5723)
                     /locus_tag="VHN39_11255"
     CDS             complement(4881..5723)
                     /locus_tag="VHN39_11255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816966.1"
                     /translation="MSTPSAPEAGAGTAPPASFPAGPTTADGASPDDLRYVAWFHELD
                     AWTEYWDVYHPETKGRFYFGDGQDEPGLLGRFLPRTTYPPPWTAWTRVALNSAAPEDF
                     RAEVRKPEVASAVMEVDELVGGLFARHFGDAADPAVQADYLEATFRFALDVLPPATER
                     EARLAPDDWRKRTAGRHTLDGDLMWFAWALHTEAVETIAGRGRDTAGHARRALTLAGI
                     AAGCPANFAWRGHRRTRAVYSPDDETLGLLRARAQAWAGDYDAAAAEVHALYRIREWG
                     EEQA"
     gene            complement(5701..5979)
                     /locus_tag="VHN39_11260"
     CDS             complement(5701..5979)
                     /locus_tag="VHN39_11260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816967.1"
                     /translation="MKMIVLGGFGSDAGYWTVENGRLVHHGGWEIDQLADVSRSLAIL
                     GQAAKLKTPGLADSVSKELSASVEKALTAHLGSQLGDGAVVIVNAIGA"
     gene            6351..6695
                     /locus_tag="VHN39_11265"
     CDS             6351..6695
                     /locus_tag="VHN39_11265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2816968.1"
                     /translation="MREDGRIDYIEFPGGDLPATKGFYAQAFGWTFTDYGPAYAAFDN
                     AGVDGGINADPQDHAKAPLVILFATDLEAMEAKVRAAGGTISRAIFSFPGGRRFHFRD
                     PSGNELAVFSEG"
     gene            6784..6966
                     /locus_tag="VHN39_11270"
     CDS             6784..6966
                     /locus_tag="VHN39_11270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816969.1"
                     /translation="MIAVLAAPVAAQPKAPKTIAVAPLPPGLTDWGIPAQAGSTLNFF
                     IPIGDALDFLALKTGN"
     gene            6971..8209
                     /locus_tag="VHN39_11275"
     CDS             6971..8209
                     /locus_tag="VHN39_11275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro peptidase family protein"
                     /protein_id="HEX2816970.1"
                     /translation="MRRRAFLTIAMAASTAAALPRVSWSAPEGLTSMTGGAKPISVEE
                     RKARIARLQDVMRRRKIGALILESGSSLDYFTGIQWHRSERTTASVIPAQGEIVTVTP
                     AFEEPSVRETLAVGGEVRPWDEHENPFARIAGALADRGVRSGAIAFESTTRLFIVDGV
                     RKAAPALKVVSGDALVKAVRLIKSPAELSLMQTANDVTLEALRHVQAQVRVGMSPGEI
                     GAMMDAATVALGGAPEFALVLINEASAYPHGSHQPQTLREGSVILMDVGCTVHGYQSD
                     ISRTWVMGAPTAKQRKVWDTVKHGQEIALATARPGVPVGAIDDAVRAYYEKEGWGPGY
                     HLPGLSHRTGHGIGLDGHEPPYLVHGDTTPLQPGMCFSDEPGIYIPGEFGIRLEDCWH
                     MTDAGPKLFTILARSIDDPI"
     gene            8334..9044
                     /locus_tag="VHN39_11280"
     CDS             8334..9044
                     /locus_tag="VHN39_11280"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2816971.1"
                     /translation="MTDPARPNEVDHVFPEAAASRRALANPDAERQELDHRLANSLQL
                     AADFLIFEHMRVTDPRARAALIETAERLSAVGQMHRFLAAQRQAMGVDLNRFLIELGV
                     LIGDSTGLDCQVDADPVIAPGEVAQQLAIVINELAMNAAKHAYAWGDRGVLNVICRRQ
                     GGKLVVTVADEGEGLDQRFAAGHTKGLGMSIIEAIVRQLMGTLEAVSDHGARFTITLP
                     LPPSGAAPSRSFSPPEPT"
     gene            complement(9049..10107)
                     /locus_tag="VHN39_11285"
     CDS             complement(9049..10107)
                     /locus_tag="VHN39_11285"
                     /inference="COORDINATES: protein motif:HMM:NF016190.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM44-like domain-containing protein"
                     /protein_id="HEX2816972.1"
                     /translation="MANLRSRFGAVLGIALALGMLAAQPADARRGGSFGSRGSRTYSA
                     PRSTATAPGYTAPVQRSMTAPGAAPGAASGGAYAPRPGMPGYAAGGYGAGPFGGFRGG
                     GFLGGLVAGGLIGGLMGHGWGGGWGGNGYGGMGGGGGFLTIIIQLLILFFIVSLVSRI
                     FFRRRGPAFSPFEAQQPAYGGPPSGGMAGFGGPIGGGGFGGGGPAAAPFVPTTGPAWE
                     IPIEPQDQATFETLLKEIQDAFGREDYAGLRERCTPEVMGYLAEELSDNATHGKKNEV
                     TGTRLLQADVGEAWREDDTDYATAAMRYESIDLMRDRATGAVLSGDPNTPSQTTELWT
                     FARHVGGPWKLSAIQESH"
     gene            complement(10180..>10542)
                     /locus_tag="VHN39_11290"
     CDS             complement(10180..>10542)
                     /locus_tag="VHN39_11290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816973.1"
                     /translation="VMSVTFDQPMLKTGFDFGPAAGGETPHCLKTPRLLDDNKTFVLL
                     CTTDPHKSYALTLNAKPEGGFANVAEHRAEPATLAFSTTDGDGPRTVADAMKVSGLRP
                     LDMPIQESPDRRGEKTDR"
BASE COUNT         1628 a         3646 c         3621 g         1647 t
ORIGIN      
        1 ggtcagcgag accttccacc aggccggcgg caaggccgaa tggctcgact ctaccggcaa
       61 gggcgccgcc accgtgacca agcccggtct ctacgtctcc caggccggca gcccgtgggg
      121 cgatgcgatc atcgcccgcc agcttctgaa ggcgcccggc atgacgctgc cggccctgcc
      181 cggcggaacg cttcggctgg agaagggcga gagcctgacg gtcaagggcg ccggcgggcc
      241 gctgagcgtc acccgctatg acctgaccgg catcgacctg acgcccacca cgctcttgct
      301 ggacgccaag ggccagatgt tcgccgaggt cgacgactcc tcgatcatcg tgcgcaaggg
      361 ctatgagggc gaggaggtgc ggctgcgcaa gttcgccgcc gactggtcaa gcgcgcgctt
      421 cgtgaacatg gagaaacagg tcgcccaccg ctacgccggg ccggtgcgca tcaagaacgt
      481 gcgcctgttc gaccccaaga cctcgagcct gaccggcccg gtctcggtgg tgatgcgcgg
      541 caaagagatc gccgcggtcg agaccctgga caaccccgcg acgccgggcg aagtgaccat
      601 cgacggcgcc ggcgggaccc tggtcgcggg cctctatgag atgcatgccc acctgggcca
      661 ggacggggcg ctcctgaacc tgatcgccgg catcaccacc gtgcgcgaca tgggcaacga
      721 caacgccgtg ctcgacgagc tggtccggcg gatggattca ggcgagatcg gcggcccgca
      781 cgtgatccgc tcgggcttca tcgagggcaa gagcccctac tccgccaaca acggcatcct
      841 ggtggacaac cagcaggcgg ccatcgacgc ggtgcgctgg tacggcgcgc gcggctactg
      901 gcagatcaag atttacaact ccatgaaccc ggcctgggtc ccggccatgg tcaaggaggc
      961 gcacggcctg ggcatgcggg tcgcgggcca cgtcccggcc ttttctaccg ccgacgacat
     1021 gatcgtcgcc ggctacgacg agatgaccca catcaaccag ttcatgctgg gctgggtgat
     1081 gatcccgggc gaggacaccc gaacgctctt ccggctgacc gcgctgaagc gcctgcccgg
     1141 cctcgacctc tcaagcccca aggtgcagca cacgatccag atgatggtcg atggcggcaa
     1201 ggccatcgat cccactctgg gcatccacga gcagctgacc cagaaccgcg acgggcaggt
     1261 tcctccgggg gctgtcgact acctcgacca catgccgatc ggctatcggc gcggcgccat
     1321 gaaggcctgg gtcgatacct cggcgcccgg cgacgacaag gcctaccgcg aggcctttga
     1381 gcagattctg cggaccacca agatgctgca cgaccgcggc gtcttcatcg tcttcggcac
     1441 cgacaccggc gggtccttca cctaccaccg ggagctggaa ctctatcagc gcgccggctt
     1501 caccccggcc gagatcgtca agcgggcgac ctatgactcc gccaaataca ccggccagga
     1561 ccagcggatg ggctccatcg agaagggcaa gctcgccgac ttcttcctga tcccgggcga
     1621 ccccaccaag gacctgaagg cgatcaagac gatccggatg gtggtgaagg atggggcgat
     1681 ctactacccg agcgaggtct atccgcactt cggcatccag cccttcgcga ccgcgccgac
     1741 ggtgaccgaa ccgaagggct agtgtgctgg atttgaagtt cgcccctatc aaggccatgc
     1801 accgagcgaa cttcaaatcc aaagaagcac actagaaaca tagacttcct agtgtcctca
     1861 tcgattccga agttcgtccg gcgctggccg caagcgcttg cgaacttcgg aatcgggaca
     1921 ctagggctcg aacatcgggt ccagtggtgc gctgcgcgtc ttcttccgcg gccgttcgcg
     1981 catgacgccc ggatagccct tgagcggcgc cagcggctcg ccggcccagg tccagtcggc
     2041 ctgctcggcg aggttcatgt ggtagcgcgg ctcgcggccg gtgcgctcgg tgaagacggc
     2101 gcggggaatg ttgaccatct tcggcgagcg ggcgcgttcg tagagcatcg gggttccgca
     2161 gcgggcgcag aagctgcgga cggtcccggc ctgggcgtcc tcgaagcggg tgaggtgctt
     2221 ttcgccccgg agaatccgga accggctctt ccagctgccc acataggtgg cgtaggcgca
     2281 gccctgggcc tggcggctgc gggcggaatg atcgtgccag gcccagaccg ctggaacgtc
     2341 gatctccagg aggaccgcgc cgcagacgca ggcccctgcc gcctggaccg cggaggcctt
     2401 tgggccgacc ttgggcaagg ccgtgacagg cgttttcatc ttggaccccg gcagattgac
     2461 ggctgagccc tcaatctagc cgctaggcct attcctcgtc atccgaccat ggctcgtcgg
     2521 aatcgctgaa gactattcgg gcctggccgc cggagcttcg gatggcgaac gccatgccct
     2581 tggccagact ttccgcgacg ccgcgcggat atggccccat cttgctgtcc gtcatgacga
     2641 accaaccggc gtcttccttg aaaaccttaa cgttcatggc cgacatcgcg atttctcccg
     2701 ccacctcaac ggaaatcgcc ctaaaatcgt tccgtgtata ctttgaatga tagttaatag
     2761 acttaacgat tacttaacca aaccaagcgg gggcgtggcc ggtcttgttc aaggatccgg
     2821 cggtcggcgg tccacatccc cttgacccgg gcggcgcagc ccccgacgaa gcgcggatga
     2881 tccctaccgc cacccccgcg actgccattc ctgccacgac cgggggccgc cgcgacttca
     2941 tcgtcgccaa cacgcggctg cagcggccgc cgcacgcgcc ggagatccag ctctatttgg
     3001 ccgacgagat cacgccgatc tggaagctga ccgaagaggc cctggaggag atcggcctgc
     3061 cgccgccctt ctgggccttc gcctgggcgg gcggccaggc gctggcgcgc tatctgatcg
     3121 acaatcctga gacggtggcc ggccgacggg tgatcgactt cgcgtcgggc tctgggctgg
     3181 tcgggatcgc cgcgatgatg gccggggcca gggacgtgct ctgcgccgac atcgacgcct
     3241 atggcgaggc ggccgtcgcg ctgaacgccg ccgtgaacgg tgtcgcctgc gccttcaccg
     3301 cgaaggacct gctggacgcg ccggcgccag ggtgggccga ggtcatcctg gccggcgaca
     3361 tctgttacga aaagccgctc gccgagcgcg tgctcgcctg gctcgccgcc gccagggccg
     3421 ccggcgccac ggtgctgatc ggcgacccgg ggcgcagcta cttcccgcgc tcgggcctga
     3481 ccaggctcgc cgagtaccag gtcccgacca cgcgggaact ggaggacatg gcggtgaaga
     3541 agacctgcgt ctgggccctg ccgtgagcgg cgtgccgacg ctggtgttcg ccctggtgtt
     3601 gggctcggcc ctgctgcatg cgacctggaa cgtcctgctg cgctccggcg ccgatcggct
     3661 gtggtcgatc acggtgatga gcctggtgtc aggcctggcc gcggcgatcg cggtctggtt
     3721 cctgccggcc ccggcggtgg cgagctggcc gttcgcggcg gtctccggcg tcctgcaggt
     3781 cggctactgc ctcttcctgg tctgggccta tgagaagggt gagctcagtc aggtctatcc
     3841 catcgcccgg ggcgccgcgc ccctgctggt ggcggtgggc gcggcggtgt tcgccggcga
     3901 acggctgtcg cccgcggcga tgggcgggct ggtcctggtg tcctcgggca tcatcggcct
     3961 gagcctggga cgccagcggc tgaacaccca cgccacggtg ctggcgctgg ccagcggcgg
     4021 cttcatcgcc ggctacatgg tctgcgacgg catgggggtc aggctgtcgg gccagccctt
     4081 cggctacttc gcctggatgt cgctggccca ggcggcgccc atgcccttcg cctatttcgc
     4141 cctgcgccgg cgctggccgg cgatgggcct cgaccgcgag accgccaagg cgatcggcgg
     4201 cggcctgatc tccattgtgg cctatggcgt ggtggtctgg gccatggccg gcgcccagat
     4261 ggccaaggtc tcgggcctgc gggagacctc gatcctgttc gccgcgatcc tggcggccct
     4321 tttcctcaag gagcgcttca ccctgcgccg ggggctctgc gctggcctga tctccctggg
     4381 cgcggtcctg ctggcgggct agctttcgag ctgggcgtcc agggtgatct cggcgttcag
     4441 caccttggac accgggcagt tctgttcggc gcccttggcg agttcctgga acttcatatc
     4501 gtcgatcccc gggatcctgg cccggagcgt cagcgccgac ttgctgatcc tgaagccgcc
     4561 gccgtcggcg gggtcgagcg acaccgcggc ctcggtcctg agctccagcg gcgtcaggcc
     4621 cgcctgctgc agggcgaagg ccagcgccat ggtgaaacag ccggcgtggg cggcggccag
     4681 caactcctcc ggattggtcc cgggctggtc ctcgaagcgg gtcttgtaac tgtagggcgt
     4741 ggacgccagc acgccggagg ccgtggtcag atcgccagcc ccgtcgcgcc ccgtgccgcg
     4801 ccacaccgcg ttcgccttgc ggatcatcgt cgcctccgtc gcttgcctgg gctctagctg
     4861 gggaggcggc cgacccggcg ctaggcctgt tcctcgcccc attcgcggat tcggtagagc
     4921 gcgtggactt ccgccgcggc ggcgtcgtag tcgcccgccc aggcctgggc gcgggcgcgc
     4981 agcagaccaa gggtttcgtc atcggggctg tagacggcgc gggtgcggcg gtgtccgcgc
     5041 caggcgaagt tcgccgggca gcccgcggcg atcccggcca gggtcagcgc gcgccgggca
     5101 tggccggcgg tatcccgccc gcggcccgcg atcgtctcga ccgcctcggt gtgcagggcc
     5161 caggcgaacc acatcaggtc gccgtcgagg gtgtggcggc cggcggtgcg cttgcgccag
     5221 tcgtccggcg caaggcgcgc ttcgcgttca gtggcgggcg gcagcacgtc gagggcgaag
     5281 cggaaagtcg cctccagata atcggcctgg acagcggggt cggcggcgtc accgaagtgc
     5341 ctcgcgaaca ggccgcccac aagctcatcc acctccatca ccgccgacgc cacctcgggc
     5401 ttgcgcacct cggcgcggaa atcctccggc gcggcgctgt tcagagcgac ccgcgtccag
     5461 gcggtccagg gtggcggata ggtggtgcgc ggcaggaagc ggcccagcag gcccggctcg
     5521 tcctggccat cgccgaagta gaagcggccc ttggtctcgg ggtgatagac gtcccagtac
     5581 tccgtccacg cgtcaagctc gtggaaccag gccacgtagc gcagatcgtc gggcgaggcc
     5641 ccgtctgctg tcgtggggcc ggcgggaaac gacgccggcg gcgccgtccc cgcgccggcc
     5701 tcaggcgccg atggcgttga caatgaccac cgcgccgtcg cccagctgcg acccgagatg
     5761 ggcggtcagg gccttctcga cgctggcgct aagctccttg ctgacgctgt cggccagacc
     5821 gggcgtcttc agcttggcgg cctgacccag gatggccaga gagcgcgaaa cgtcggcgag
     5881 ctggtcgatt tcccagccgc catggtggac caggcgtcca ttctccaccg tccagtagcc
     5941 ggcgtcgctg ccgaacccac ccagaacaat catcttcatt gcggtctcca tcatgttggc
     6001 cctgggccgc gacggcagcg aacacgctgg gaattcccac cccgcgatgc gcccgggcgt
     6061 tgaaccttcg gatggagcct tgaggccgcc acccgtccgt gacgaacaaa gcaacgcata
     6121 ctcagaccgc cacccggcca gcttgcaggc gagcccgacg acgagcttag ccttgcatgg
     6181 gaacacccgt ttaacgagcg ccataaggga gaattcacgg aaagttggcc tcaaccaagc
     6241 attgcaggcg ccaactcggc ccaccgcggc ccggccgcgt gtgagttctc tttatgttct
     6301 tgtctgtgtt gcgacccggc gctagggttt tccccacagg agaccaagcc atgcgggaag
     6361 acggcaggat cgactacatc gagttcccgg gcggcgatct gccggccaca aagggcttct
     6421 atgcccaggc cttcggctgg accttcaccg actatggccc cgcctacgcg gccttcgaca
     6481 acgccggcgt cgacggcggg atcaacgccg acccgcaaga ccacgccaag gcgccgctgg
     6541 tgatcctgtt cgccaccgac ctggaggcca tggaggccaa ggtccgcgcc gccggcggga
     6601 ccatcagccg agcgatcttc agcttccccg gcgggcggag gttccacttc cgcgacccca
     6661 gcggcaatga gctggcggtg ttcagcgagg ggtgagtgac ggtccctagg cgcgacgcgg
     6721 cggatcgtgc ttaggtttac gccgggtcgg gggagttcga tgcggccgtt tctctgtgcg
     6781 ctcatgatcg cggtgctggc ggcgccggtc gccgcgcagc cgaaagcgcc gaagacgatc
     6841 gccgtcgcgc cgttgccgcc aggcctgacc gactggggca tccccgccca ggccggctcg
     6901 acgctgaatt tcttcatccc gatcggcgac gcgctcgact tcctcgccct caagaccgga
     6961 aactgacccc atgcgccgcc gcgcctttct gaccatcgcc atggccgcct cgacggccgc
     7021 cgccctgccg cgcgtctcct ggtcggcgcc agaggggctg acgtccatga ccggcggcgc
     7081 caagccgatc tccgtggagg aacgcaaggc gcggatcgcg cggctgcagg acgtgatgcg
     7141 gcggcggaag atcggggcgc tgatcctgga gtcggggtcg agcctcgact acttcaccgg
     7201 cattcagtgg catcggtcag agcggaccac cgcctcggtg atcccggcgc agggcgagat
     7261 cgtcaccgtg acgccggcct ttgaggagcc ctcggtgcgc gagaccctgg cggtgggcgg
     7321 cgaggtgcgg ccctgggacg agcacgagaa ccccttcgcc cgcatcgccg gcgcgcttgc
     7381 cgaccgcggc gtgaggtcgg gcgcgatcgc ctttgaatcc accacccgcc tgttcatcgt
     7441 cgacggggtg cgcaaggcgg cgccggccct gaaggtggtc tccggcgacg ccctggtgaa
     7501 ggccgtgcgg ttgatcaagt cgccggcgga actgtccctg atgcagaccg ccaacgacgt
     7561 gacgctggag gcgctccgcc acgtccaagc ccaggtgcgc gtcggcatga gccccggcga
     7621 gatcggcgcg atgatggacg cggcgaccgt ggccctgggc ggggcgcctg agttcgcgct
     7681 ggtgctgatc aacgaggcca gcgcctatcc gcatggcagc caccagcccc agacgctgcg
     7741 cgagggctcg gtgatcctga tggacgtggg ctgcacggtg cacggctacc agtccgatat
     7801 ttcccgcacc tgggtcatgg gcgcgcccac ggccaaacag cgcaaggtct gggacacggt
     7861 caagcacgga caggagatcg cgctcgccac cgcaaggccg ggcgtgccgg tcggcgccat
     7921 cgacgacgcc gtgcgggcct attacgagaa ggagggctgg ggacccggct accacctgcc
     7981 gggcctgtcg caccgcaccg gccacggcat cggcctcgac ggccacgagc cgccctatct
     8041 ggtgcacggc gatacgacgc cgctccagcc cggcatgtgt ttctccgacg aaccgggcat
     8101 ctacatcccc ggcgaattcg gcatccggct ggaggactgc tggcacatga ccgacgccgg
     8161 gccgaagctg tttaccatcc tggccaggtc catcgacgac ccgatctagg cgtttcgccg
     8221 gcgcgcctgc gccaaatgaa atcgcgtcaa ccctgtctgt tgaccaattg tacacgatca
     8281 cactgtttca tggctgaaac gattggaggg gggcccctca atcggagact ggcgtgaccg
     8341 atccggcgcg acccaatgaa gtcgaccacg tgttccccga ggcggccgcc tcacggcgcg
     8401 ctttggcaaa ccctgacgcc gagcgccagg agctcgacca ccggctggcc aacagcctgc
     8461 agctggccgc cgacttcctg atcttcgagc acatgcgcgt gaccgacccg agggcccgcg
     8521 cggccctgat cgagacggcc gagcggctct cggccgtggg gcagatgcac cggttcctgg
     8581 ccgcccagcg ccaggcgatg ggcgtcgacc tgaaccgctt cctgatcgaa ctcggcgtcc
     8641 tgattggcga ttccacgggc ctggactgcc aggtggacgc cgacccggtg atcgcccccg
     8701 gcgaggtcgc ccagcagctg gctatcgtga tcaacgagct ggccatgaac gcggccaaac
     8761 acgcctatgc gtggggagac cgtggtgtgc tcaacgtcat ctgccgccgc cagggcggca
     8821 agctggtggt gaccgtcgcg gacgagggcg aggggctgga tcagcgcttc gccgccggtc
     8881 acaccaaggg tctgggcatg agcatcatcg aggccatcgt gcgccagttg atggggacgc
     8941 tggaggccgt cagcgaccac ggcgcgcgct tcacgatcac cctgcccctg ccgccgtccg
     9001 gggccgcgcc ttcccgttcc ttctcgccgc cggagccgac ctgaaagctc agtgcgactc
     9061 ttggatcgcc gacagcttcc agggcccgcc gacatggcgc gcgaaggtcc agagctcggt
     9121 ggtctggctg ggggtgttgg ggtcgcccga cagcaccgca ccggtcgcac ggtcgcgcat
     9181 caggtcgatg ctttcatagc gcatggcggc cgtagcgtag tcggtgtcgt cctcgcgcca
     9241 ggcctcgccg acgtcagcct gcagcaggcg cgtgccggtg acctcgttct tcttgccgtg
     9301 ggtggcgttg tcgctgagct cctcggcgag gtagcccatg acctccggcg tgcagcgttc
     9361 gcgcaggccc gcgtagtcct cgcggccaaa ggcatcctgg atttccttca gcagggtctc
     9421 gaacgtggcc tggtcctgcg gctcgatggg gatctcccag gccgggccgg tggtggggac
     9481 gaaaggcgcg gccgccgggc cgccgccgcc aaacccgccg ccgccgatcg gaccgccgaa
     9541 gccggccatt ccaccgctgg gggggccgcc ataggccggc tgctgcgcct cgaagggcga
     9601 gaaggccggg ccgcgccggc ggaagaagat ccggctgacc agggagacga tgaagaacag
     9661 gatcaggagc tggatgatga tcgtgaggaa accgccgccg ccgcccatgc cgccgtagcc
     9721 attgccgccc cagccgccgc cccaaccgtg gcccatcaga ccgccgatca ggccgccggc
     9781 caccaggccg ccgaggaacc caccgccgcg gaagccgccg aacggccccg cgccatagcc
     9841 gccggccgcg tagccgggca tgccgggccg gggcgcatag gcgcccccag aagctgcccc
     9901 gggggccgcg ccgggcgcgg tcatcgagcg ctgcaccggg gcggtgtagc cgggcgccgt
     9961 cgccgtcgag cgcggcgcgg agtaggtgcg cgacccacgg ctgccgaaac tgccgccgcg
    10021 ccgggcgtcc gccggctggg ccgccagcat gccaagcgcc aacgctatgc cgagcaccgc
    10081 gccgaacctg gaccgaagat tggccatcga atgtcctccc tgacccttga gaatgtaaga
    10141 agcgtcgcgg gccggcgcca gatcgcgcgc gcggaggtct cagcggtcgg tcttttcgcc
    10201 gcggcggtcg ggggattcct ggatcggcat gtcgagcggg cgcaggcccg agaccttcat
    10261 cgcgtcggcg accgtgcgcg ggccgtcgcc atcggtggtg gagaaggcca gcgtggccgg
    10321 ctcggcacga tgctcggcga cattggcgaa gccgccctcg ggcttggcgt tgagggtcag
    10381 cgcataggat ttgtgcggat cggtggtgca gagcaggacg aaggttttgt tgtcgtccag
    10441 caggcgcggg gtcttcaggc agtgcggcgt ctccccgccc gccgcggggc cgaagtcgaa
    10501 gccggtcttc agcatcggct ggtcgaaggt gacgctcatc ac
//
LOCUS       DATAJL010000587         1505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_60150,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000587 DATAJL010000000
VERSION     DATAJL010000587.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60150"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..371
                     /locus_tag="VHN39_11295"
     CDS             <1..371
                     /locus_tag="VHN39_11295"
                     /EC_number="1.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004146 - dihydrofolate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEX2816974.1"
                     /translation="TWESLPKKPLVGRTNIVLSRDGSFEPKGAVVCEEFTEAVAIGRE
                     QAEEDGAREVCVIGGASLFELALAKAGRIYLTDIDAEIEGDVTLSALDESRWTEVSAR
                     AYPAGEDDDYPFTIRVLERR"
     gene            419..1330
                     /locus_tag="VHN39_11300"
     CDS             419..1330
                     /locus_tag="VHN39_11300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX2816975.1"
                     /translation="MDIQLVAEGFEFPEGPIAMADGSVILTEIKGQRLTRVSPDGKKE
                     TLVETGGGPNGAAIGPDGAIYITNNGGAFEWLDVQGLCVPGPTPASHVGGSLQRFDLA
                     SGKLTTLYDACDGRRLVGPNDLVFDKQGGIWFTDHGCGTPEGRKFGALCYAKTDGSHI
                     SRQRDHLISPNGVGLSPDEKTVYAADTQLARLWAFDIAEPGVLGPPPGFAPGRVIRNL
                     DGFSYLDSLAVEAGGKVCVATIINGGITAFDPDGSTEHFPFPDLICTNICFGGADMMD
                     AWITASSTGKLYKTRWPRPGLKLNFNA"
BASE COUNT          247 a          532 c          485 g          241 t
ORIGIN      
        1 agacctggga gagcctgccg aagaagcccc tggtcggacg caccaacatc gtgctttccc
       61 gcgacggctc cttcgagccc aagggggccg tcgtctgcga ggagttcacc gaggccgtcg
      121 ccatcggccg cgagcaggcc gaggaggacg gcgcgcggga ggtctgcgtg atcggcggcg
      181 cctcgctctt cgagctcgcg ctggccaagg ccggtcgcat ctacctcacc gacatcgacg
      241 cggagatcga gggcgacgtg acgctctccg ccctcgacga gagccgctgg accgaggtca
      301 gcgcgcgggc ctatccggcc ggcgaggacg acgactatcc cttcaccatc cgggtgctgg
      361 aacgccgctg atcttcggct agggttgctc tcaacaagca ctgttgaggg acgccgagat
      421 ggacatccag ctggtcgccg agggcttcga gtttcccgaa ggccccatcg ccatggccga
      481 cggctcggtc atcctgaccg agatcaaggg tcagcggctg acccgggttt ctcccgacgg
      541 caaaaaggag accctggtcg agaccggcgg cggtcccaac ggcgcagcca tcggcccgga
      601 cggcgcgatc tacatcacca acaatggcgg cgccttcgag tggctggacg tccagggcct
      661 gtgcgttccg ggcccgacgc cggccagcca tgtcggcggc tcgctccagc ggttcgacct
      721 ggccagcggc aaactcacca ccctctacga cgcctgcgac ggccggcgcc tggtgggccc
      781 caatgacctg gtgttcgaca agcagggcgg gatctggttc accgaccacg gctgtggcac
      841 gccggagggc cgcaagttcg gcgcgctctg ctacgccaag accgatggca gccacattag
      901 tcgccagcgc gaccacctga tctcccccaa cggcgtgggc ctgtcgcctg acgagaagac
      961 cgtctacgcc gccgacaccc agctcgcgcg gttgtgggcc ttcgatatcg ccgagcccgg
     1021 cgtgctcggc ccgccacctg gcttcgcgcc cggccgcgtg atccggaacc tggacggctt
     1081 cagctacctg gactcgctcg ccgtcgaggc cggcggcaag gtctgcgtgg cgaccatcat
     1141 caacggcggc atcaccgcct tcgaccccga cggatcgacc gagcatttcc cgttcccgga
     1201 cctgatctgc accaacatct gcttcggcgg ggcggacatg atggacgcct ggatcaccgc
     1261 ctcctccacc ggcaagctct acaaaacccg ctggccgcgg cccgggttga agctcaattt
     1321 caacgcctga gcgtccttat ggccgagcta tgctgcactg cgacagctcg ccgcatcacg
     1381 gtttggcaac cctaagcctg tagctctcgt acctgacgca cgagcccgca acgacggggt
     1441 gtcgttgggg tgtttgcaat gcagcgtatc gtgaccttcg cggcgggcct gtcggcggcc
     1501 atcgt
//
LOCUS       DATAJL010000588         3938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10216,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000588 DATAJL010000000
VERSION     DATAJL010000588.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3938
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10216"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..622)
                     /locus_tag="VHN39_11305"
     CDS             complement(<1..622)
                     /locus_tag="VHN39_11305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816976.1"
                     /translation="MRVNGDFHELSLNTAHVGVGLALVALGFVAMGAVKGSPAHKLSG
                     RLFVAAMLAMAATGVVLVAVGLPRAMLTAWAAQPAFYLALTGWLAARQQRPGAGLSEI
                     AGVAVASLMAIDSVFLAETAKDARVGVLFAGAAIATLLAAADLRIALRGGLARPQRIR
                     RHLWRMGFSVVVATAAIATQAQRFPEGVRPYLPLLILPPLAFTLIQL"
     gene            1131..>3938
                     /locus_tag="VHN39_11310"
     CDS             1131..>3938
                     /locus_tag="VHN39_11310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004620528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulator propeller
                     domain-containing protein"
                     /protein_id="HEX2816977.1"
                     /translation="MIVERLPGACLRSAKRVLAALGELLAAALILYAACGPAHGAPAR
                     RWGDLAQDVLQRIAEDRELPNGITPTNIVTDGDGFLWVGGQGALSRWDGYHFRTYTAD
                     PKDPGSLPEGNMMALYTDAKGRLWVGTMTGMLGRYDRDHDRFVTYPKWPRGSARVAIL
                     SLADDGAGGLWIGTLTGLFHLSPGSGVIERVQGATDRKSADGADGVDAFRNVVAVLLP
                     ESSGGLWIGTKHGLLHKTAHSQTFTPVPIAGVRTDQPSIARLALASDGRLWIGTDQDG
                     AFVLSPKDGTVKVIPGPGELGSARPIGQVSSIVEVRPGEIWLGTKDEGIIAVNAETLA
                     AYRIHHQAGVPSSLTDDTVHDLHRNPAGLVFIATNRSLSRYDPRRTRFRTVFGDTGQP
                     SDLADQNPLSLIAAPDGRLWVGLFNHGVDVVTPETGAIHHLAPHAGPVDRTLPKAAVR
                     VLTPGPNGDVFLGTDNGLYRTDRDGRHLQRVVIPGRDPQRTISALYFDGKVLWVGGRQ
                     EGLWGFDVATERVVRREQAPRLSNQVVTTIAPGSGGVLWIGTLTGLNRLNPATGAIDR
                     FVSNPADPNSLPNSWVSSILSDSRGRLWVTMGGQGVALLEHPDASGPGRFRRFGVAAG
                     LPTNYCDTILEDRNGDMWVSTDNGLAIIDPRTFAIRVPHFAEGMAVSNYWSHSGVATR
                     AGELLFGGLGGVTVVRPEPRQDTGYRPPLAVTEVRVGGKRVAVGALAGAAGGQALIVP
                     AATNSVAVEFASLDFAAPERLRYAYRLEGVDRDWVETDATRRVATYTNLSPGDHVLEI
                     RASRLDGGWGPSVRVPMRVLPTWFQTLWFKTVEVLAGLGLVLAVVFTRTAQLRRRQQE
                     LEAQVAHRTQALHAQTEVLEAQAVELSEAKLTAEALAQAKSEFLANMSHEIRTPMNGV
                     IGMTGLLLETELTATQHEFVDT"
BASE COUNT          651 a         1370 c         1314 g          603 t
ORIGIN      
        1 acaactggat gagcgtgaac gcgagcggcg gcaggatcag cagcggcaga tagggccgga
       61 cgccctcggg gaaccgctgc gcctgggtgg cgatcgccgc cgtggcgacg accacggaga
      121 agcccatgcg ccacagatgc cggcggatcc gctgcgggcg ggcgaggccg ccgcgcagcg
      181 cgatcctgag gtccgccgcc gccagcaggg tggcgatcgc cgcgccggcg aacagcacgc
      241 cgacgcgggc gtccttggcc gtctcggcga ggaagacgct atcgatggcc atcaggctgg
      301 ccacggcgac ccccgcgatc tccgagagcc cagcccccgg gcgctgctgg cgcgccgcca
      361 gccatcccgt gagcgccaga tagaaggcgg gctgcgccgc ccaagcggtc agcatcgccc
      421 gcggcagccc cacggcgacc agcaccacgc cggtggcggc catcgccagc attgccgcga
      481 cgaacagccg gccgctcagc ttgtgcgccg gagagccctt gaccgcgccc atggccacga
      541 agccgagcgc gacgagggcc aagccgacgc ccacatgggc ggtgttcagc gagagctcgt
      601 gaaagtcgcc gttgacgcgc atgacgggca ctcctccaaa cggggcagca taaccccgtt
      661 gcgcgtcggg accatgatcc tgcgggccac ggactaaacc ccacgcgcca aggcggcttc
      721 cgaaacagac tccggggcgc caccaacgtc cgctcgccac ccaaaggtga ccgcaggaaa
      781 gtccgctctt agggcgggag gcggaccact gcgttcgacg cgttgcctac ctgttggccg
      841 ccgccatcgc agtgtttacg ttcaatactt ggcgctctcg tcagcccgcc gcgagtgacg
      901 ccccgacgct ggatccgggc gccaaccagc ggcagatcag ggcctcggcc atttggacgc
      961 gggcgcatcg gccacgatgc gcttcgcggg tgcggcccca tgtcgcaaag ctggttagcc
     1021 aaggattatt gctccgggtc cagtagctac ggtcgcaaat gtcgtcgctg gaggccgcgc
     1081 gccggtcgtc atgggccgag gtctcggcag gccggcgggg ggagctttga atgatcgtcg
     1141 aacggcttcc gggcgcctgc cttcgttctg cgaagcgcgt cctcgccgcc cttggcgagc
     1201 ttctggcggc cgcgttgatc ctctatgccg cgtgcggacc ggcgcacggc gccccggcgc
     1261 gccgctgggg cgacctggcg caagacgtcc tgcagcgcat cgcggaggac cgcgaactgc
     1321 cgaacgggat cacacccacg aacatcgtga ccgatggcga cggctttctt tgggtcggcg
     1381 gccaaggcgc gctgtcgcga tgggacggat atcacttccg cacctacacg gccgatccca
     1441 aggacccggg ctccctaccc gagggcaaca tgatggccct ttataccgac gccaagggcc
     1501 gcctgtgggt cggcaccatg accggaatgc tgggtcggta tgaccgcgac cacgatcgtt
     1561 tcgtcaccta cccgaagtgg ccgcgcgggt ccgcgagggt cgccatccta tccctcgccg
     1621 atgacggagc cggtggcctg tggatcggga cgctgaccgg gctctttcat ttgagtccgg
     1681 ggtccggcgt catcgaacgc gttcagggcg ccaccgaccg gaaaagtgca gacggcgcag
     1741 atggggtcga cgcgtttcgc aatgtggtcg ccgttctcct gccggagtcc tccggcggcc
     1801 tatggatcgg cacgaaacat ggcctgctgc acaagaccgc gcactctcag acgttcaccc
     1861 cagttccaat agcgggcgtc cgaaccgacc aaccctccat cgcgcgcctc gcgctggcca
     1921 gcgacgggcg gctgtggatt ggcaccgacc aggatggggc gttcgtcctg tcgcccaagg
     1981 atggaacggt caaggtgatc cccgggcctg gggagttggg cagcgcccgc ccgatcggcc
     2041 aggtgagttc catcgtcgag gtgcgccccg gcgaaatctg gctgggcacc aaggacgaag
     2101 gcatcatcgc ggtgaacgcc gagaccctgg ccgcttaccg gattcatcac caggccggtg
     2161 tcccatcgag cctcaccgac gacacggtgc acgacttgca ccgcaacccc gccggcctgg
     2221 tgttcatcgc caccaatcgc tccttgagcc gctacgatcc cagacgcacg cgcttccgga
     2281 ccgtcttcgg cgacaccggc cagccaagtg acctcgcgga ccagaatccg ctgtcgctga
     2341 tcgcggcgcc ggacggacgt ctctgggtcg gcctgttcaa ccacggcgtg gatgtcgtca
     2401 cgccggagac cggcgcgatc catcacctgg cgccgcacgc ggggcctgtc gatcgcaccc
     2461 tgccgaaagc cgccgtccgg gttctgacgc cgggcccgaa cggcgacgta ttcctgggca
     2521 cggacaatgg cctctaccgg acagatcgcg acggacgtca tcttcagcgc gtggtgattc
     2581 cgggccgcga cccccagagg acgatttccg cgctctactt cgacggaaag gtgctgtggg
     2641 tgggcggacg acaggagggc ctatgggggt ttgacgttgc aaccgagcgg gtcgtccggc
     2701 gggaacaggc tcccaggctt tcgaatcagg ttgtgacgac gatcgcccca ggctccggcg
     2761 gcgtgctgtg gatcggcacc ctgaccggac tgaaccggct gaacccggcc actggagcca
     2821 tcgaccgttt cgtctccaac cctgccgacc ccaattcact gccaaacagc tgggtctcct
     2881 ccatcctgtc cgacagtcga gggcgcctct gggtgacgat gggcggccag ggcgtcgccc
     2941 tgcttgaaca tcccgacgca agcggccctg ggcgcttccg ccggttcggc gtcgctgcgg
     3001 ggttgcccac caactactgc gatacgatcc ttgaagatcg caacggggat atgtgggtca
     3061 gcactgacaa cggcctcgcg atcatcgacc cgcgcacatt cgccattcgc gttccgcatt
     3121 tcgccgaggg catggccgtc tccaactact ggagccattc cggagtcgcg acgcgggcgg
     3181 gtgaactgtt gttcggcggc ttgggcgggg tgacggtcgt gcgccccgag ccgcgacagg
     3241 acactggcta ccggccgccc ctggcggtca ccgaagtccg tgtcggcggc aagcgggtcg
     3301 ccgtgggcgc cctggcgggc gccgccgggg ggcaagctct gatcgtcccg gcggccacca
     3361 acagcgtcgc cgtcgagttc gcgtccctgg atttcgcggc gcccgagcgg ctgcgctacg
     3421 cctaccggct cgaaggtgtc gaccgcgatt gggtagagac cgacgccacc cgccgcgtgg
     3481 ccacctatac gaacctgtct cccggcgacc acgtcctcga aatccgcgca tcaagacttg
     3541 acggcggctg ggggccgagc gtgcgcgttc cgatgcgtgt gcttccgaca tggtttcaga
     3601 cgctgtggtt caagaccgtg gaagtcctcg caggcctggg tctggtgctg gcggtggtct
     3661 tcaccaggac cgcccagctg cgccgccgcc agcaggaact ggaagcccag gtcgcccacc
     3721 gcacccaggc gctgcatgcc cagaccgaag tcctggaagc ccaagccgtg gagctctccg
     3781 aggccaagct caccgccgag gccctggcac aggccaagtc cgagttcctg gccaacatga
     3841 gccatgaaat ccgcacgccg atgaacggtg tcatcggcat gaccggcctg ctgctggaaa
     3901 cggaactcac ggccacccag catgagtttg tcgatacg
//
LOCUS       DATAJL010000589         4893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36208,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000589 DATAJL010000000
VERSION     DATAJL010000589.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4893
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36208"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VHN39_11315"
     CDS             <1..422
                     /locus_tag="VHN39_11315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007675351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX2816978.1"
                     /translation="AGAPAERARSLRKYGQDLGLAFQLVDDALDYSGDSETLGKNPGD
                     DFREGKATLPLLLAMTRSGPAEREFWIRTVDRREQTEADFTRTCELMRQTGALDSTLD
                     LAATYAASAKAALADFGANPWRPALEDLADFAVARLA"
     gene            complement(435..683)
                     /locus_tag="VHN39_11320"
     CDS             complement(435..683)
                     /locus_tag="VHN39_11320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518121.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816979.1"
                     /translation="MASETVYILQSYVAGRGKALKAEPQVGCKTAEEARRKAERLAPL
                     RVGVVAFSATADTELGDYDENPVILFKAGRLPHPFDEA"
     gene            complement(732..2123)
                     /gene="fumC"
                     /locus_tag="VHN39_11325"
     CDS             complement(732..2123)
                     /gene="fumC"
                     /locus_tag="VHN39_11325"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEX2816980.1"
                     /translation="MTATRTETDTFGPIEVAADRYWGAQTQRSLQNFKIGWEKQPIPV
                     VRALGVVKRAAAEANAALGKLDPKIAEAIVVAAQEVIDGKLDDHFPLVVWQTGSGTQS
                     NMNANEVISNRAIEMLGGAMGSKTPVHPNDHVNMSQSSNDTYPTAMHIACAEEVARSV
                     MPALEHLHAALKAKSAQFDHIIKIGRTHTQDATPLTLGQEFGGYAHQTHMSVRRLKDT
                     LYGLYELAQGGTAVGTGLTAPVGFAEKVAERIAAITRLPFVTAPNKFEALAAHDAMVF
                     SHGALTATAAALFKIANDIRYLGSGPRAGLGELSLPENEPGSSIMPGKVNPTQAEALT
                     MVCAHVMGNQTTMGFAGSQGQFELNVYNPVMAYNFLQSCRLLADASVSFTDNMVVGIE
                     AREDNIAANLERSLMLVTALKEHIGYDKAAKIAKTAHANGTTLREEAVGGGYVTNEEF
                     DAWVRPEDMIGPG"
     gene            2226..2546
                     /locus_tag="VHN39_11330"
     CDS             2226..2546
                     /locus_tag="VHN39_11330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004624152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HEX2816981.1"
                     /translation="MLVATTNDISGYKITAHIGMVRGVTVRSRSVIGNFAGGLQSIFG
                     GNLTIYSDLADHARQEAYDLMVQHAQRAGADAVIGMRYDANEIMDGITEVLAYGTAVK
                     VERV"
     gene            2569..2973
                     /locus_tag="VHN39_11335"
     CDS             2569..2973
                     /locus_tag="VHN39_11335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HEX2816982.1"
                     /translation="MEGAWTQHGKVRAREAEGVLEVVVDGLTTQAKYYKPLIYEFFRK
                     AWRGSRPSWGEFAVEIRMEYVGDPPWLDLDNLAKAILDAIKGYAFHDDAQVARLLVER
                     ASGERECITVTVRRLSGAGPTGPLQRASEVRG"
     gene            2970..3164
                     /locus_tag="VHN39_11340"
     CDS             2970..3164
                     /locus_tag="VHN39_11340"
                     /inference="COORDINATES: protein motif:HMM:NF020967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2007 domain-containing protein"
                     /protein_id="HEX2816983.1"
                     /translation="MIEVLKTSDPVRLNFLRSVLEEADLHPFVMTASAYPGVLPSRLM
                     VPDGEVDMARRLIAEVEAGL"
     gene            complement(3256..3543)
                     /locus_tag="VHN39_11345"
     CDS             complement(3256..3543)
                     /locus_tag="VHN39_11345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516321.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1153 domain-containing protein"
                     /protein_id="HEX2816984.1"
                     /translation="MLQQQQTRTNSRGESYVIGPTGAPLTLRDLPPPDTGRWVIRRKA
                     EVVAAVRGGLLSLEDALERYRLTSEEFLAWQRSIDRHGLAGLRTTRLQQYR"
     gene            complement(3709..>4893)
                     /locus_tag="VHN39_11350"
     CDS             complement(3709..>4893)
                     /locus_tag="VHN39_11350"
                     /inference="COORDINATES: protein motif:HMM:TIGR03506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HEX2816985.1"
                     /translation="AGGVTGVNKAFISQQGLIQSASSTTDMAISGDGFFVVTTKGAGV
                     TASDPREFTRAGAFEPDANGYLVNDAGLYLQGWPVQANGTFDVDPSDLSKIQPINVKN
                     LGAAVQQTGQIAISANLDETTAVSAGAATYDKTLKSMALYASSAGASGTAPDAPPIEL
                     SVIDSVGGTHKFAVAFEKTATPNQWNAEIYAVPASDVTTLPSGQVAAGLVNFNTDGSI
                     NLATSTLFGAAGAAPTITPAWSASLGIAAQTLTLNLNQLTQLASTSTVNSVNSDGASA
                     GNIVGVQVGTDGVVSALFDNSQVRKIAQVAIATFPNSDGLAATSGNAYTRALGAGTMT
                     LKTAGTGGAGKISASSLEASTVDLSSEFTGLITTQKAYSASSKIITTADTMLDELINI
                     IR"
BASE COUNT          738 a         1627 c         1670 g          858 t
ORIGIN      
        1 ccgccggcgc gccggccgag cgcgcgcgga gcttgcgcaa atacggccag gacctgggcc
       61 tggccttcca gctggtggac gacgcgctgg actattccgg cgacagcgag accctgggca
      121 agaatcccgg cgacgatttc cgcgaaggca aggccacttt gccgcttctt ctcgccatga
      181 cccgctcggg gcccgccgag cgcgaattct ggatccgcac cgtcgaccgc cgcgagcaga
      241 ctgaggccga cttcacccgc acctgcgaat tgatgcgcca gaccggcgcg ctggactcca
      301 ccctggacct ggccgcgacc tatgccgcca gcgccaaggc cgcgctcgcc gacttcggcg
      361 ccaacccctg gcgcccggcc ctggaagacc tcgccgactt cgcggtcgcg cggttggcct
      421 aggcttcgtc gcccctaagc ctcgtcgaac gggtgcggca ggcggccggc cttgaacagg
      481 atcaccgggt tctcgtcata gtcgccgagt tcggtgtccg ccgtggccga gaacgccacc
      541 acgcccaccc gcaggggcgc cagtcgctcg gccttgcggc gcgcctcttc cgccgtcttg
      601 cagcctacct gcggctcggc cttcagcgcc ttgccgcgcc cggcgacgta ggattgcagg
      661 atgtagacgg tctcgctggc catggcgcac ccacgcgccg gttggcgagt cccgtcaatg
      721 gccccgcggg ctcatcccgg cccgatcatg tcttccggcc gcacccaggc gtcgaactcc
      781 tcgttggtca catagccgcc gcccaccgcc tcttcgcgga gggtggtgcc attggcgtgg
      841 gcggtcttgg cgatcttggc ggccttgtcg tagccgatgt gctccttgag cgcggtcacc
      901 agcatcagcg atcgctccag gttcgccgcg atgttgtcct cgcgggcctc gatgcccacc
      961 accatgttgt cggtgaagct gacgctcgcg tcggccagca ggcggcagga ctgcaggaaa
     1021 ttgtaggcca tcaccgggtt gtagacgttg agctcgaact ggccctgcga gccggcgaac
     1081 cccatcgtcg tctggtttcc catcacatgc gcgcagacca tggtcagcgc ctcggcctgg
     1141 gtcggattga cctttcccgg catgatcgag gagcccggct cgttctccgg cagcgagagc
     1201 tcgcctagcc cggcgcgggg gccactccct aagtagcgga tgtcgttggc gatcttgaac
     1261 agcgccgcgg ccgtcgcggt cagggccccg tggctgaaca ccatggcgtc gtgggcggcc
     1321 agggcctcga atttgttggg cgcggtcacg aagggcaggc gggtgatcgc cgcgatccgc
     1381 tcggccacct tctcggcgaa gcccaccggc gcggtcaggc cggtccccac cgccgtgccg
     1441 ccctgggcca gctcatagag gccgtagagc gtgtccttca gccggcgcac cgacatgtgg
     1501 gtctggtgcg catagccacc gaactcctgg ccgagcgtca gcggcgtggc gtcctgggtg
     1561 tgggtgcggc cgatcttgat gatgtggtcg aactgcgccg acttggcctt cagcgccgca
     1621 tgcaggtgct ccagggccgg catcacgctg cgagccacct cctcggcgca ggcgatgtgc
     1681 atggccgtgg gataggtgtc gttggacgac tggctcatgt tgacgtggtc gttggggtgc
     1741 accggcgtct tggagcccat ggcgccgccc agcatctcga tcgcccggtt cgagatcacc
     1801 tcattggcgt tcatgttcga ctgggtgccg ctcccggtct gccagaccac cagcgggaaa
     1861 tggtcgtcga gcttgccgtc gatcacctcc tgggcggcca cgacgatggc ttcggcgatc
     1921 ttggggtcca gcttgcccag cgccgcattg gcttcggccg ccgcgcgctt caccacaccc
     1981 agggcgcgga ccaccggaat cggctgcttc tcccagccga tcttgaagtt ctgcagcgac
     2041 cgctgggtct gggcgcccca gtagcggtcg gcggcgacct cgatgggccc gaaggtgtcc
     2101 gtctcggtgc gggtggcggt catcaagggc gtccccaata gcgatccggc cggtctagct
     2161 ccgcaacctt tgcgcggcaa cggggcggcg atatagggga ggggtccctc ctcggagcca
     2221 aacccatgct ggtcgccacc accaacgaca tctcaggcta caagatcacc gcccacatcg
     2281 gcatggtccg gggcgtcacc gtccgctcgc gcagcgtgat cggcaacttc gccggcggcc
     2341 tgcagtcgat cttcgggggc aacctgacga tctactccga cctggccgac catgcccgac
     2401 aggaggccta tgacctgatg gtccagcacg cccagcgggc cggggccgac gcggtgatcg
     2461 gcatgcgcta cgacgccaac gagatcatgg acggcatcac cgaggtcctg gcctacggca
     2521 ccgcggtcaa ggtcgagcgg gtctagcctg gccacaggag gatttcgggt ggagggcgcc
     2581 tggacccagc acggcaaggt ccgcgcccgc gaggccgagg gcgtcctgga ggtggtggtc
     2641 gatggcctga ccacccaagc caagtactat aagcccctga tctacgagtt cttccgcaag
     2701 gcttggcgcg gctcgcggcc cagttggggt gagttcgccg tggagatccg catggaatat
     2761 gtcggcgacc cgccgtggct ggacctcgac aacctcgcca aggcgatcct cgacgccatc
     2821 aagggctacg ccttccacga cgacgctcag gtggcgcgcc tcctggtgga acgcgcttca
     2881 ggcgagcggg aatgcatcac ggtcacggtg cggcgcctct cgggcgcggg ccccacgggc
     2941 cctctgcagc gcgccagcga ggtccgcgga tgatcgaagt gctgaaaacc agcgacccgg
     3001 tgcgtctgaa cttcctgcgc tcggtgctgg aagaggccga tctgcacccc ttcgtgatga
     3061 ccgcctcggc ctatccgggc gtgctgccga gccgcctgat ggtcccggat ggcgaagtgg
     3121 acatggcccg ccgcctgatc gccgaggttg aggcggggct ctagtcgagt cggctcccaa
     3181 aacgcgaaac ggccgcaccc tgtggcgggg tgcggccgcg acttacgcga acctcttcgg
     3241 gggaaagctc agaggttagc gatactgttg gagacgcgtg gtgcgaagcc ccgcgagacc
     3301 atgtcgatcg atggaccgtt gccacgcgag gaattcctcc gacgtcaggc ggtagcgctc
     3361 cagcgcgtcc tcgagcgaga gcaagccccc gcggacggcg gccacgacct cggccttgcg
     3421 tcggatcacc caccggccgg tgtccggcgg cggcaaatcc ctcagcgtca acggcgcgcc
     3481 cgtggggccg ataacgtacg actccccccg gctattcgtg cgcgtctgct gttgctgcaa
     3541 catggcttta cgcctttccc accatcactg ttgatgagaa ctatacggca cggctcctaa
     3601 cagccgctga atcgtagtag tcaacaaagt tctaatcatc ttgttccccg tgtactaatt
     3661 cggcacagtg tggattttac actcggttaa tctcagttaa gactaagatt accggatgat
     3721 gttgatcagc tcgtccagca tcgtgtccgc cgtggtgatg atcttcgagg aggccgagta
     3781 ggccttctgc gtggtgatca ggccggtgaa ctcgctcgac aggtcgacgg tcgaggcttc
     3841 caggctggac gccgagatct tgcccgcccc gccggtgccg gccgtcttca gggtcatggt
     3901 gccggcgccc aacgcgcgcg tgtaggcgtt gccgctggtg gccgccaggc cgtccgagtt
     3961 cgggaaggtg gcgatggcca cctgcgcgat cttgcggacc tggctgttgt cgaacagcgc
     4021 cgagacgacc ccgtcggtgc ccacctggac gccgacgatg ttgccggcgc tggcgccgtc
     4081 ggagttcacc gagttcaccg tcgaggtcga cgcgagctgg gtcaactggt tcaggttgag
     4141 ggtgagcgtc tgcgccgcga tgccgaggct cgccgaccag gccggcgtga ttgtcggcgc
     4201 agcgccggcg gccccgaaca gggtggaggt cgccaggttg atggagccgt cggtgttgaa
     4261 attcaccagg ccggcggcca cctggccgga cggcagggtg gtcacgtcgg aggcgggaac
     4321 agcgtagatt tccgcgttcc actggttggg cgtggcggtc ttctcgaagg ccacagcgaa
     4381 cttgtgggtg ccgccgaccg agtcgataac gctgagctcg atgggcgggg cgtccggcgc
     4441 ggtgccggag gcgcccgccg aggacgcgta gagggccatg gatttcagcg tcttgtcgta
     4501 ggtcgccgcg ccagcgctga ccgcggtggt ctcgtcgagg ttggcgctga tggcgatctg
     4561 gccggtctgc tggacggcgg cgcccaggtt cttgacgttg atcggctgga tcttggaaag
     4621 gtccgaggga tcgacgtcga aggtgccgtt ggcctgcacg ggccagccct gaagatagag
     4681 gccggcgtcg ttgaccaggt agccgttggc gtcgggctcg aaggcgcccg cgcgggtgaa
     4741 ttcgcgcgga tccgaggccg tcacgcccgc gcccttggtg gtgacaacga agaagccgtc
     4801 cccggagatc gccatgtcgg tcgtcgacga ggcgctctgg atcaggccct gctggctgat
     4861 gaaggccttg ttgacgcccg tcaccccgcc tgc
//
LOCUS       DATAJL010000590         2292 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36215,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000590 DATAJL010000000
VERSION     DATAJL010000590.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36215"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..744)
                     /locus_tag="VHN39_11355"
     CDS             complement(<1..744)
                     /locus_tag="VHN39_11355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX2816986.1"
                     /translation="MDRQVRFEAAQGDNDRYRILVDAITDYAIFMLDPQGRISSWNAG
                     AQRFKGYEAAEIIGQHFSQFYTEEDRADGVPARALRTAAEEGRFETEGWRVRKDGTRF
                     WAHVVIDPIRAPQGELIGFAKVTRDLTERQVAGETLRQSEEQFRLLVQGVTDYAIYML
                     DTEGRVTSWNAGAQRIKGYRPDEIIGDHFSRFYTEEDRKAGEPAKALRTAAAEGRFEK
                     ESWRVRKDGTRFWAHVVIDPIRGDDGKILG"
     regulatory      846..952
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1006..>2292
                     /gene="thiC"
                     /locus_tag="VHN39_11360"
     CDS             1006..>2292
                     /gene="thiC"
                     /locus_tag="VHN39_11360"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEX2816987.1"
                     /translation="MNKPTGNIESAPKGQNVPTGERPGSKKVYQPGVLWPDIRVPFRE
                     VAVHPSANEPALTLYDPSGPYTDPTVAIDIEKGLSKTREPWVVSRGDIEIVENPREVK
                     PADNGFAKGARLAPQFTASRRVYRAKAGANVTQLEYARRGLITPEMEYVAIRENLRRQ
                     ESDPFIRDGEDFGASIPDFCTPEFVRDEIARGRAIIPANINHTELEPMIIGRNFLVKI
                     NANIGNSAVLSHVSDEVDKMVWSIRCGADTVMDLSTGRNIHNIRDWIVRNSSVPIGTV
                     PIYQALEKVNGVAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVRLAYVPLTARRVTGIV
                     SRGGSIMAKWCLSHHKENFLYEHFEDICEIMRAYDVSFSLGDGLRPGCIADANDAAQF
                     GELETLGELTQVAWKHNVQVMIEGPGHVPMHKIKANM"
BASE COUNT          392 a          828 c          694 g          378 t
ORIGIN      
        1 gccgaggatc ttgccgtcgt cgccgcggat cgggtcgatg accacatgcg cccagaagcg
       61 cgtaccgtcc ttgcggaccc gccagctctc cttctcgaag cgcccctccg cggcggcggt
      121 gcgcagcgcc ttggccggtt ccccggcctt gcgatcctcc tcggtgtaga accgggagaa
      181 gtgatcgccg atgatctcat cgggccggta acccttgatc cgctgggcgc cggcgttcca
      241 gctggtcacc cggccctcgg tgtcgagcat gtagatcgcg tagtcggtca cgccctgcac
      301 caggagacgg aactgctcct cgctctgccg cagggtctct ccggccactt ggcgctccgt
      361 caggtcgcgg gtgaccttgg cgaagccgat cagctcgccc tgcggggcgc ggatcgggtc
      421 gatgaccaca tgcgcccaga agcgcgtgcc gtccttgcgg acccgccagc cttccgtctc
      481 aaagcgccct tcctccgccg ccgtcctcag ggcgcgcgcc ggcacgccgt cggcgcggtc
      541 ctcctccgtg tagaactgcg aaaagtgctg gccgatgatt tcggcggcct cgtagccctt
      601 gaaccgctgc gcgccggcgt tccagctgct gatccgcccc tgcggatcga gcatgaagat
      661 cgcgtagtcg gtgatcgcgt cgaccaggat gcggtagcgg tcgttatcgc cctgcgcagc
      721 ctcgaagcga acttgccgat ccatctgtct ccccgggcgg gcgcaccacc cctcagcagc
      781 taatcctcgc ccgggtcgaa agttcccgcc tggtcttccc ccgccaggcc ttcgggccta
      841 acgtcggctt ctcctcgggg ggccgcgcca agtggctgag aggcgggtga tcccgcgacc
      901 cgtcgaacct gatccgggtc atgccggcga agggaaggaa tgtggtttcc gacctgacgc
      961 ccgtggtccc tccaccgagc cccaagctct ggcaaaggcc gcgccatgaa caagcccacc
     1021 ggcaatatcg aatccgcccc caaaggccaa aatgtcccca ccggcgaacg cccggggtcg
     1081 aagaaggtct atcagcccgg cgtgctctgg cccgacattc gcgtgccgtt ccgcgaggtg
     1141 gccgtccacc cctccgccaa cgagccggcg ctgaccctct acgatccatc cggcccctac
     1201 accgacccca ccgtggccat cgacatcgaa aagggcctaa gcaagacccg cgagccctgg
     1261 gtggtctctc gcggcgacat cgagatcgtc gaaaaccccc gtgaggtgaa gcccgcggac
     1321 aacggctttg ccaagggtgc gcgcctggcg ccccagttca ccgcgtcgcg ccgcgtctac
     1381 cgcgccaagg ccggcgccaa cgtcacccag ctggaatatg cccgaagggg gctgatcacc
     1441 ccggaaatgg aatacgtcgc catccgcgag aacttgcgcc gccaggagag cgacccgttc
     1501 atccgtgacg gcgaggactt cggcgcctcg atccccgact tctgcacccc ggagttcgtg
     1561 cgcgacgaga tcgcccgcgg ccgcgccatc atcccggcca acatcaacca caccgagctt
     1621 gagccgatga tcatcggccg caacttcctg gtgaagatca acgccaacat cggcaattcg
     1681 gcggtgctca gccacgtctc cgacgaggtc gataagatgg tttggtcgat ccgctgcggc
     1741 gcggacaccg tcatggatct ttccaccggc cgcaacatcc acaacatccg cgactggatc
     1801 gtgcgcaact catccgtgcc catcggcacc gtgccgatct accaggcgct tgagaaggtc
     1861 aacggcgtgg ccgaggacct gacctgggag gtgttccgcg acaccctgat cgaacaggcc
     1921 gagcagggcg tcgactactt caccatccat gcgggcgtgc ggctggccta tgtgccgctg
     1981 accgccaggc gggtcaccgg catcgtctcc cgcggcggct cgatcatggc caagtggtgc
     2041 ctcagccacc acaaggagaa cttcctctac gagcacttcg aagacatctg cgagatcatg
     2101 cgcgcctatg acgtctcgtt ctcgctcggc gatggcctgc gccctggctg tatcgccgac
     2161 gccaatgacg cggcccagtt cggcgagctg gagaccctgg gcgagctcac ccaggtcgcc
     2221 tggaagcaca atgtccaggt gatgatcgaa ggccccggcc acgttccgat gcacaagatc
     2281 aaggccaaca tg
//
LOCUS       DATAJL010000591         1852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36254,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000591 DATAJL010000000
VERSION     DATAJL010000591.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36254"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1159)
                     /locus_tag="VHN39_11365"
     CDS             complement(<1..1159)
                     /locus_tag="VHN39_11365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEX2816988.1"
                     /translation="MTAPLDGHRFDLSEPWLRFREPEVERTFTRETFLQSIGVIRAYL
                     LGGTALYAAFGLLDLTVGGPSTAVLLAIRWGLVCPILLAILGLTFWKSLFLRVGQAAL
                     TASLLASGLGVVAMTALMPAPFNSEYYAGIIMVVIYCGTLIRLKYRYSVLATVILVLS
                     YQASALWLNPIPRTLLISNDFFLGMAAAVGLFSGYFQDLHIRRAYASRKTADEAREAA
                     DAANRAKTEFLATMSHEIRTPLNGVLGMAQAMALDRLSKAQRERLQVIGHSGEMLLAL
                     VNDVLDLSKIEAGKLELDLTDFDLEALVRGAQANFQPMAAGKGLEFTVAVAQGAGGTW
                     RGDAVRVRQILYNLISNAVKFTAVGSIEVGIRAVDAGLECSVSDTGIGISPG"
     gene            1480..>1852
                     /locus_tag="VHN39_11370"
     CDS             1480..>1852
                     /locus_tag="VHN39_11370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816989.1"
                     /translation="MFRKTILASLLVSSAMTLAIATPASAASKADRAREAIAAAEAKL
                     QTAESLGAATDAPRDTADARAALATAKEDFKSGDREPAIREAIRASALADTAIGLAQR
                     HKDNAVASARDAQHATAEAARN"
BASE COUNT          340 a          652 c          608 g          252 t
ORIGIN      
        1 ggccggggct gatgccgatg ccggtgtcgc tcaccgagca ctcgaggcct gcgtccacgg
       61 ccctgatgcc cacctcgatc gaccccaccg ccgtgaactt cacggcgttt gagatcaggt
      121 tgtagaggat ctggcgcacg cgcaccgcgt cgcctcgcca ggttccgccg gcgccctgcg
      181 caaccgcaac ggtgaactcc agccccttgc cggccgccat gggctggaag ttggcctggg
      241 cgccgcgcac cagcgcctcg agatcgaagt cggtgaggtc cagctccagc ttgccggcct
      301 cgatcttcga caggtcgagc acatcgttga cgagggcgag cagcatctcg cccgagtggc
      361 cgatcacctg caaccgctca cgctgcgcct tcgacaggcg gtccagcgcc atggcctggg
      421 ccatccctag caccccgttc agcggcgtgc ggatctcgtg gctcatcgtc gccaggaatt
      481 cggtcttcgc gcgattggcc gcgtcggcgg cctcgcgcgc ctcgtcggcg gtcttgcggc
      541 tggcataggc gcggcggatg tggaggtcct ggaaatagcc ggaaaacagc ccgacggccg
      601 ccgccatgcc gaggaagaag tcgttgctga tcagcagggt ccgggggatc ggattgagcc
      661 acagcgccga ggcctggtag ctgaggacca ggatgaccgt ggccagcacg ctgtagcggt
      721 acttcaggcg gatcagcgtg ccgcaataga tcaccaccat gatgatgcct gcgtagtact
      781 cgctgttgaa cggcgccggc atcagcgcgg tcatggcgac cacccccagc ccggaggcca
      841 gcagcgacgc ggtcagcgcc gcctgcccca cgcgaaggaa cagcgacttc cagaaggtca
      901 ggccaaggat cgccagcagg atcgggcaca ccaggcccca gcggatcgcc agcaggacgg
      961 ccgtgctcgg cccgccgacc gtcaggtcca ggagcccgaa cgcggcatag agcgccgtgc
     1021 cgcccagcag gtaggcgcga atgacgccga tggactgcag gaaggtctcg cgcgtgaagg
     1081 tcctctcgac ctccggctcg cggaaccgca gccagggctc gctcagatcg aaacgatggc
     1141 cgtccagggg cgccgtcatg cgcggccctc gctacacatg ggcgtggagg cgcatcgtcg
     1201 agaaaagggc gtccgatact gcgggcatga gaccattgtc cgcgaaattc attaagacgt
     1261 ggcaagcgcc aggcgcgaaa tcgcgccctt ggccaaacgg tgggaaattc gcaggttcgg
     1321 ctgcgggacc tgcagtcggc gatcgaccag gccatcgaac gtgaaaacgg cccggcgcct
     1381 gacgggacga aacatatcgc cccgccagcc gttaccgccc aacgccaatg aaacgtcagc
     1441 cgcaagggcg acagccttcg ccaacggcag gagaacacca tgtttcgtaa aaccatcctc
     1501 gcttcactcc tcgtctcgag cgccatgacg ctcgccatcg cgacacccgc gtccgcggcc
     1561 agcaaggccg accgcgcgcg cgaagccatc gccgccgccg aggccaagct gcagaccgcc
     1621 gagtccctgg gcgccgccac cgatgcgccg cgcgacacgg ccgatgcgcg cgcggcgctc
     1681 gccaccgcca aggaagattt caaatccggc gatcgggagc cggcgatccg tgaggcgatc
     1741 cgggcttcgg cgctggccga caccgcgatc ggcctagctc agcgccacaa ggacaacgct
     1801 gtcgcctcgg cgcgcgacgc ccagcacgcg acggccgaag cggcccgcaa tc
//
LOCUS       DATAJL010000592         2580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_107371,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000592 DATAJL010000000
VERSION     DATAJL010000592.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107371"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VHN39_11375"
     CDS             <1..352
                     /locus_tag="VHN39_11375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2816990.1"
                     /translation="HNGEPAPLIVKSGALTIDLPRRLVTRRGELVHLSPREYELLAKL
                     AQNVGKVMQHRHLLISIWGPAHAEDTQYLRVFIGQLRQKIEGDPSEPQVILTEPGIGY
                     RFVTDDMLRVPPRA"
     gene            complement(451..1296)
                     /locus_tag="VHN39_11380"
     CDS             complement(451..1296)
                     /locus_tag="VHN39_11380"
                     /inference="COORDINATES: protein motif:HMM:NF024884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEX2816991.1"
                     /translation="MANDIAVPTDASDIDPGVAASGPPTRPSTVLGYGLSLLLVVAAT
                     LVAFVVDHIIPTPNLSLVFVLPVIVAALSFGWGPALVSAMLSVAIFDFFFVEPRLTFR
                     VDSPADLWALGLLLVVAAIASTVGAQSRGRAVAARHATQQAEALHSLAHAVIQAEPPS
                     ALTKIAATALSRIFDAPAVVLSEKAGKLWPAAASGGATLSVADQEAANWALAHNQPTR
                     AETYPFDQAVFDFWPVQTPATPRLVLGVNLVGRPGGRPRDPSRQVELVAAYLSAAKMG
                     AERSA"
     gene            complement(1486..>2580)
                     /locus_tag="VHN39_11385"
     CDS             complement(1486..>2580)
                     /locus_tag="VHN39_11385"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2816992.1"
                     /translation="AVINPIVSGVLTTGSATTLRGPDASSRTQSASLLASYEVDLFGA
                     LAAQKDAATWEARATAQDLESARLSLIAATVDDYFLVGYLNDRIVQAEQSVVYAQKAL
                     DLVTIQARAGASSSLEVAEAARNLSSQQAGLHDLIQQRVEGRNTLDLLLNGETAAPGD
                     ELQRLPQGTPPPVDAGLPASLLARRPDLRATELRLREKLANVDQARLDFYPALSLTGS
                     LGSTSASLGNLVRNPIGTFGTQLALPFLQFDQLKLGVGVSRANYEAATAQFRQTLYQA
                     LADVENALSGREQLAAQGLALEDSLKNARTVERLNEVRYRAGSIPLQIWLDSQETRRQ
                     AENAVAQNRLNRIQNYATLCKALGGDPAQP"
BASE COUNT          399 a          828 c          943 g          410 t
ORIGIN      
        1 ccataacggt gagccggcgc cgctgatcgt caagtctggc gcgctcacca tcgacctccc
       61 gcggcgcctg gtcacccgcc gcggcgagct cgtgcacctc tctcctcggg aatacgaact
      121 cctggccaag ctggcccaga acgtcggcaa ggtcatgcaa catcgtcatc tgctgatctc
      181 gatctggggc ccggcgcacg cggaagacac ccagtacctg cgcgtcttca tcggtcagct
      241 gcgacagaag atcgaaggcg atccctccga gccgcaggtg atcctgaccg agcccgggat
      301 cggctaccgg ttcgtcaccg acgacatgct gcgcgttccg ccccgggcct gacgttcatg
      361 gccggagccc cgccccttac gaggccgaag gcggtgaggg cgtccatcac gggcggtctg
      421 gacttggtgt cttgcggagg atgacaggtc ttaggcggac cgttcggcgc ccatcttcgc
      481 ggcagagaga taggccgcga cgagctctac ctgacggctt ggatcacggg ggcggccgcc
      541 cggacgacca accagattca cgcccagcac cagccgaggc gttgccgggg tctgaaccgg
      601 ccagaagtcg aaaaccgcct ggtcgaaggg gtaggtttca gcgcgcgtcg gctggttgtg
      661 ggcgagcgcc cagtttgccg cttcctgatc cgcaaccgaa agggtcgccc cgccgctggc
      721 ggcggccggc cagagctttc ccgccttctc tgacaggacc acggccggtg cgtcgaagat
      781 gcggctgagc gcggtggctg cgatcttggt cagggcggag ggcggctcag cctggatgac
      841 ggcgtgcgcc aggctgtgca gcgcctcggc ctgctgtgtg gcgtgccgtg cggcgaccgc
      901 gcgtccacgg gactgggcgc cgaccgtgct ggcgatggcg gccaccacca gcaggagtcc
      961 caaggcccaa aggtccgccg ggctgtccac ccggaaggtc aggcggggct ccacgaaaaa
     1021 gaagtcgaag atggcgacgc tgagcatggc cgagaccagc gccgggcccc agccgaagct
     1081 cagggcggcg acgatgaccg gaagcacgaa gaccaaggac agattgggtg tcggaatgat
     1141 gtggtcgacc acgaaggcga ccagcgtggc ggcaaccacc agcaggagac tcaggccata
     1201 gcccaggaca gtcgaaggac gcgtcggagg tcctgacgcc gccacgccgg gatcgatgtc
     1261 ggaggcgtcg gtggggactg caatgtcatt ggccatcggg gccctccttg gggtcgagga
     1321 gtccccttcg cataccccct ttcggcataa gggttcgata cggaattcag gctccgccgt
     1381 ggcctgacct cgcccgtggg gaagctcatc tgagcgcccg acgcagccgg gtctggccat
     1441 cgaaggcttg ggcgtgtcga ttgcgccatt ggacggcggg cccggctagg gctgggcggg
     1501 gtcgccgccc agggccttgc agagggtggc gtagttctgg atgcggttga ggcggttttg
     1561 cgccaccgcg ttctcggctt ggcggcgggt ctcctgggag tcgagccaga tctgcagcgg
     1621 gatcgatcca gcgcgataac gcacctcgtt cagccgctcg acggtgcggg cgttcttcag
     1681 ggagtcctcc agcgccaggc cctgggcggc gagctgttcg cgccctgaca gcgcgttctc
     1741 gacgtcagcg agggcctggt agagcgtctg gcggaactgg gcggtggcgg cctcgtagtt
     1801 ggcccgcgac accccgacgc cgagtttgag ctggtcgaac tgcaggaagg gaagcgcgag
     1861 ctgggtgccg aacgtcccga tcggattgcg caccagattg ccgaggctcg cgctggtgct
     1921 gcccagcgac ccggtgaggc tcagcgccgg atagaagtcg agccgggcct gatcgacatt
     1981 ggcgagcttc tcgcgcaggc gaagctcggt ggcgcgcagg tccggtcgcc gcgccagcag
     2041 gctcgctggc aggccggcgt caaccggcgg cggagttcct tgcgggagcc gctggagctc
     2101 gtcgcccggc gcggcggtct caccgttcag cagcaggtcg agcgtgttgc ggccctcgac
     2161 ccgctgctgg atcaggtcgt ggaggccggc ctgctggctg gagaggttgc gcgccgcctc
     2221 ggccacttcc agcgatgacg acgctccggc gcgggcctgg atggtgacga ggtccagcgc
     2281 tttctgggcg tagacgacgc tctgttcggc ctggacgatg cggtcgttga ggtagcccac
     2341 gaggaaatag tcgtcgacgg tggcggcgat cagcgacagc cgcgcgctct ccagatcctg
     2401 ggcggtggcc cgggcttccc aggtcgcggc gtccttctga gcggcgagcg cgccgaacag
     2461 gtccacctca tagcttgcca gcagcgaggc gctctgggtg cggctggagg cgtcggggcc
     2521 gcgcagcgtc gtggccgagc cggtggtcag gacgccgctt acgatcggat tgatcaccgc
//
LOCUS       DATAJL010000593         2320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_83063,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000593 DATAJL010000000
VERSION     DATAJL010000593.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83063"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2098)
                     /locus_tag="VHN39_11390"
     CDS             complement(<1..2098)
                     /locus_tag="VHN39_11390"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX2816993.1"
                     /translation="MKISTLLATAMIAASGLASNAAAAKVPLTHETLWMMKRVGSPVV
                     SPDGKWVVFSITEPSYEPDKAVSDLWLVSAAGGAPPRRLTNTKASEGGAVWSPDSSSI
                     AFTTKREGDEVDQVYVLNIAQGGEARRISTLSTAAANPQWRPDGQAILFETMVYPGAL
                     DDAANRKAAADKKARKYNVRTYEHFPIRYWNEWLDERLPAIEVQSLEPGAKARDILSP
                     TRLAHTPGFSGPEGETSISLSPVWSPDGKEVVFSATVERWNSAFSEVGYQLYRLPVDG
                     GEATPVTPFKGGGFRGATFSPDGKALYFTYAPRNAEIYNLPRLGKVAWPAGGEIAPVT
                     RDFDRETERFELTPDGKTVYMLVPEAGKTNLYAVASAGGKPALVIEPVNGGYSGLAIP
                     PKTAKPELIGIYGSSVSPGEIVRIDPAAKSHTNLTNVNTALAAGIDWAPPQHFWFTSA
                     RGRQIHNMIVLPPNFDPSKTYPLLVFIHGGAASMNPDQISLRWDYHLLTTPGYVMLMT
                     DYTGSTGFGEKFAQAIKLDPLKTPGLEIDQAVNEALKRYPFIDGTKMCAAGASYGGHM
                     VNWLEATTTRYKCLVSHAGEVDLLTQWGTSDGIYGREVTNGGPPWEGNPVWRDQSPIT
                     YAANWKTPMLLSIGERDFRVPINNTLENWSTLQRMKVPSRLLVWPDAWHWILKPEDSR
                     HFYAEVDTWLAHYLKGG"
BASE COUNT          358 a          772 c          768 g          422 t
ORIGIN      
        1 gcccgccctt caggtagtgc gccagccagg tatccacctc ggcatagaag tggcggctgt
       61 cctcgggctt gaggatccag tgccaggcgt cgggccagac cagcagccgg ctcggcacct
      121 tcatccgctg cagggtcgac cagttctcca gcgtgttgtt gatcggcacc cggaaatcgc
      181 gctcgccgat ggagagcagc atcggggtct tccagttggc ggcgtaggtg atcgggctct
      241 ggtcgcgcca gaccgggttt ccctcccagg gcgggccgcc attggtgacc tctcggccat
      301 agatgccgtc gctggtgccc cattgggtga gcaggtccac ctcgccggcg tggctgacca
      361 ggcacttgta gcgggtggtc gtggcctcca gccagttgac catgtgcccg ccatagctcg
      421 cgcctgccgc gcacatcttc gtcccgtcga tgaacggata gcgcttcagc gcctcgttga
      481 ccgcctggtc gatctccagc cccggcgtct tcagggggtc gagcttgatc gcctgggcga
      541 acttctcccc aaagcccgtc gagcccgtgt agtcggtcat cagcatcacg tacccgggcg
      601 tcgtcagcag gtggtagtcc catcgcaggc tgatctggtc ggggttcatg ctggccgcgc
      661 cgccatggat gaacaccagc agcgggtatg tcttcgaggg atcgaagttc ggcggcagga
      721 cgatcatgtt gtggatctgc cgcccgcggg cgctggtgaa ccagaagtgc tgcggcggcg
      781 cccagtcgat gccggcggcg agcgcggtgt tcacgttcgt caggtttgtg tggctcttgg
      841 ccgccggatc gatccgcacg atctcgcccg ggctcacgga cgagccatag atcccgatca
      901 gttcgggctt ggcggtcttc ggcgggatcg ccagaccgct gtaacctccg ttgaccggct
      961 cgatgaccag ggctggcttt ccgcccgccg aggccacggc gtagaggttg gtcttcccgg
     1021 cctccggaac cagcatgtag acggtcttgc cgtccggggt gagctcgaag cgctccgttt
     1081 cccggtcgaa gtccctggtg accggcgcga tctcgccgcc agccggccac gccaccttgc
     1141 ccaggcgcgg caggttgtag atctccgcgt tccgcggcgc ataggtgaag tagagcgcct
     1201 tgccgtcggg gctgaaggtc gcgccccgga aaccaccacc cttgaacggg gtgaccggcg
     1261 tcgcttcccc gccgtcgacg ggcaggcgat agagctgata gccgacctcg ctgaaggccg
     1321 aattccagcg ctcgacggtg gctgagaaca ctacctcctt gccatcagga ctccagaccg
     1381 gcgacagcga gatgctggtc tcaccctccg gccccgaaaa acccggcgtg tgggcgagcc
     1441 tggtcggcga caggatgtcc ctcgccttgg cccccggctc cagtgactgc acctcgatgg
     1501 ccggcagccg ctcgtccagc cactcgttcc agtagcggat cgggaagtgc tcataggtgc
     1561 ggacgttgta tttgcgggct ttcttgtcgg cggcggcctt gcggttggcc gcgtcgtcca
     1621 gcgcgcccgg gtagaccatg gtctcgaaga ggatcgcctg gccgtccggc cgccactgcg
     1681 gattggccgc cgcggttgac agggtcgaga tccgccgcgc ctcaccgccc tgggcgatgt
     1741 tcagcacata gacctggtcg acctcgtcgc cctcgcgctt ggtcgtaaac gcgatcgagc
     1801 tcgaatccgg cgaccagacc gcaccgccct cgctcgcctt ggtgttggtc agccgccggg
     1861 gcggagcccc gccggccgcc gacacgagcc acaggtcgct gacggccttg tccggctcgt
     1921 aggagggctc agtgatcgag aacaccaccc atttgccgtc ggggctgacc accggcgagc
     1981 ccacacgctt catcatccac agcgtctcgt gggtcagcgg aaccttggcc gccgccgcat
     2041 tggacgccag accggacgcg gcgatcatcg ccgtcgccag gagggtggaa atcttcatgt
     2101 cgcccccgcg aaactggaat tcggatcgaa agaccctaac gggtgaattg gggtgagtcc
     2161 ccaagactac ccaagaaggg gaggttcaaa gggttgggat ttgaagttca tggccggtgg
     2221 tggcacagcc atccctctcg gcgcgcggag ctcaagaaga cagcatgacg accttggtca
     2281 cgggctcggc cggattcatc ggcttccacc tcgcgcggcg
//
LOCUS       DATAJL010000594         3500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36280,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000594 DATAJL010000000
VERSION     DATAJL010000594.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3500
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36280"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..405)
                     /locus_tag="VHN39_11395"
     CDS             complement(<1..405)
                     /locus_tag="VHN39_11395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816994.1"
                     /translation="MPRLACLLAVVIFAGSAAGASAQEPAAPSSAGQGSAGQGVEVSA
                     LAAPDAFTTPGRETGLPATLWRGASVKTARTVLPLLATKTLSPAAAALARRVLATGGV
                     GPLGAGSDPVLAGARASALIAQGDPRAAAAILA"
     gene            472..1035
                     /locus_tag="VHN39_11400"
     CDS             472..1035
                     /locus_tag="VHN39_11400"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006274733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEX2816995.1"
                     /translation="MDRYAPLRRRTIALVGLMGVGKSSVGRRLANALELPFRDADSEV
                     EAAAGRSISDIFTDLGEDAFREGERRVIARLLDLPPHVLATGGGAFMTPDTRVLIKSK
                     AISVWLKADLDVLARRVSRKDNRPLLAGKDPLDVLQAQADARYPAYGEADIIVETGDA
                     AHHVTVEQVIAALSEHLAADAPGATAP"
     gene            1032..2141
                     /gene="aroB"
                     /locus_tag="VHN39_11405"
     CDS             1032..2141
                     /gene="aroB"
                     /locus_tag="VHN39_11405"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEX2816996.1"
                     /translation="MTRTIGVGLGARSYEVRVGPGLIDQAGEAMAPLLKRRRTAIVSD
                     ETVWGLHGVRLNAALARAEITASPVIVAPGEQTKSFAGLAEVTDRLLALELDRGDVIT
                     AFGGGVVGDLAGFAAAIYKRGIDFVQIPTTLLAQVDSSVGGKTAIDVAAGKNLVGAFH
                     QPRLVLADLDVLSTLPEREMRAGYAEVIKYGLLGDFGFFEWLEAHGGEVLAREPAALA
                     EAVARSVVMKAAIVAKDETEQGRRALLNLGHTFGHALEAETGYGAALLHGEAVAAGMA
                     LAFRFSAAQGLCPTQDARRATAGIAAVGLPTTLAEVAGHPFDAQRLVRHMAQDKKAEG
                     GKLTFILARGLGDAFVARDVDAAAVTAFLKLEGAV"
     gene            2138..3421
                     /locus_tag="VHN39_11410"
     CDS             2138..3421
                     /locus_tag="VHN39_11410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEX2816997.1"
                     /translation="MMAALMALAPIVFGLLAASALFSAAETAMTGASRARMHQLDREG
                     DRAARRVNRLLTDREMMIGAVLLGNNIFNILATELASSVFAKVIPGAWGVAAATAVMT
                     VLILVFAEILPKTLAILRSDDVARFLSAPTLVVVKLFGPIIFGVQFVIRKTLNLFGVH
                     LGMEMDVLAAHEEIRGAVEYHHSEGLVESRDRWMLGGVLDLAEMDVSEVMVHRKEIAT
                     IDVDLTPREILTAAPDSGHSRVPLYRDEPENIVGVLHNKDLLQAIADADGRIEAVHMA
                     AIVREPWFIPETTSLKDQLAAFLKRRTHFALVVDEYGALQGLVTLEDILEEIVGEIED
                     EHDTAPAGVTTAHDGSVSVDGSVTIRDLNRAMNWDLPDEEAVTVAGLLIHEARRIPDA
                     GQTFSFHRHRFTVLERKANRITRLQIWPAAERDDD"
BASE COUNT          520 a         1239 c         1234 g          507 t
ORIGIN      
        1 cgccaggatg gcggcggccg ccctcgggtc gccctgggcg atcagggcgc tggcccgcgc
       61 cccggccagc accgggtccg aacccgcgcc cagcggtccc accccgccgg tggccagcac
      121 acggcgggcg agcgccgcgg cggccggcga cagggtcttt gtggccagca gcggcaacac
      181 ggtccgcgcg gtcttcaccg aggcgccgcg ccacagggtc gccggcaggc cggtctcgcg
      241 gccgggcgtt gtgaaggcgt caggtgcagc cagggcggag acctcgaccc cctggccggc
      301 tgaaccctgt ccggccgaac tcggcgccgc cggctcctgc gcagacgctc ccgccgccga
      361 tccggcgaag atcacgacag cgagcagaca ggcgaggcgc ggcatggccc gatcatagcg
      421 ggcgcgcgaa gttggcgcga gggcgctggc tcgtgtagac cttcgacgtt catggaccga
      481 tatgccccgc tgcgccgccg caccatcgcc ctcgtgggcc tgatgggcgt cggcaagtcg
      541 agcgttggcc gcagactcgc caacgccctg gagctgccgt tccgtgacgc cgattccgag
      601 gtcgaggccg cggccgggcg ctcgatctcc gacatcttca ccgatctggg cgaggacgcc
      661 ttccgcgagg gcgagcggcg ggtgatcgcg cgcctgctgg atctgccgcc gcatgtgctg
      721 gccaccggcg gcggggcctt catgaccccg gacacgcggg tcctgatcaa gtcaaaggcg
      781 atctcggtgt ggctgaaggc cgacctggac gttctggccc gccgggtctc gcgcaaggac
      841 aaccgccccc tgctggccgg caaggatccc ttggacgttc tgcaggccca ggccgacgcg
      901 cgctatccgg cctatggcga ggccgacatc atcgtcgaga ccggtgacgc cgcccatcac
      961 gtcaccgtcg agcaggtgat cgccgccttg tccgaacatc tcgcggcgga cgcgcctgga
     1021 gcgaccgcgc catgacccgc acgatcggcg tgggcctggg ggcgcggtcc tatgaggtgc
     1081 gggtgggtcc cggcttgatc gaccaggcgg gcgaggccat ggcgccgctc ctcaagcggc
     1141 ggcgcaccgc gatcgtcagc gacgagaccg tctggggcct gcacggcgtg cggcttaacg
     1201 cggcgctggc gcgcgccgag attaccgcct cgccggtcat cgtggcgccg ggcgaacaga
     1261 ccaagagctt cgcgggcctg gccgaggtca ccgatcggct gctggcgctg gaactcgacc
     1321 ggggcgacgt gatcacggcc ttcggcggcg gggtggtggg cgacctcgcg gggttcgcgg
     1381 cggcgatcta caagcgcggc atagacttcg tgcagattcc cacgaccctg ttggctcagg
     1441 tggattcctc ggtaggcggc aagaccgcca tcgacgtggc cgccggcaag aacctggtgg
     1501 gcgccttcca ccagcctagg ctggtgctgg ccgacctcga tgtgctctcg accctgcccg
     1561 aacgcgagat gcgcgcgggc tatgccgagg tgatcaaata cggcctgctc ggcgacttcg
     1621 gcttcttcga atggctggag gcccatgggg gcgaggtgct ggcgcgcgag cccgcggcgc
     1681 tggccgaggc ggtcgcgcgg tccgtcgtga tgaaggccgc gatcgtcgcc aaggacgaga
     1741 ccgaacaggg tcgccgcgcg ctcctgaacc tcggccacac cttcggccac gccctggagg
     1801 ccgagaccgg ctatggcgcg gccctgctgc acggcgaggc tgtggccgcg ggcatggcgc
     1861 tcgccttccg gttctcggcc gcccaggggc tatgtccgac gcaggacgcg cgtcgcgcca
     1921 ccgcggggat cgccgcggtc ggcctgccca ccacgctggc cgaggtcgcg ggccatccct
     1981 tcgacgccca gcgcctggtc cgccacatgg cccaggacaa gaaggctgaa ggcggcaagc
     2041 tcaccttcat cctggcgcgc ggcctgggcg acgcctttgt cgccagggac gtggacgccg
     2101 ccgccgtcac cgcattcctc aagctcgaag gggccgtctg atggccgccc tcatggcgct
     2161 agcccccatc gtgttcggct tgctcgcggc ctcggccctg ttctccgccg ccgagacggc
     2221 gatgaccggc gccagccgcg cgcgcatgca ccagctggac cgcgagggcg accgcgccgc
     2281 ccggcgggtc aaccgcctgc tcaccgaccg cgagatgatg atcggggcgg tcctcctggg
     2341 gaacaacatc ttcaacatcc tggccaccga gctcgcgagc tcggtgttcg ccaaggtgat
     2401 ccccggcgcc tggggcgtcg cggccgcgac cgcggtcatg accgtcctga tcctggtctt
     2461 cgccgagatc ctgccgaaga cgctcgccat cctgcgctcc gacgacgtgg cgcgcttcct
     2521 gtcggcgccg acgctcgtgg ttgtgaagct ctttggcccg atcatcttcg gggtgcagtt
     2581 cgtcatccgg aagacgctga acctcttcgg cgtgcatctg ggcatggaga tggacgtgct
     2641 ggccgcccac gaggagatcc gcggcgcggt cgaataccac cactccgaag gcctggtgga
     2701 gagccgtgac cgctggatgc tgggcggggt gctggacctg gccgaaatgg acgtcagcga
     2761 ggtgatggtc caccgcaagg agatcgccac catcgacgtc gaccttacgc cgcgcgagat
     2821 cctgaccgcg gcccccgata gcggccacag ccgcgtgccg ctctaccgcg acgagccgga
     2881 gaacatcgtg ggcgtcctgc acaacaagga cctcctgcag gccatcgctg acgccgacgg
     2941 gaggatcgag gccgtccaca tggccgctat cgtccgcgag ccctggttca tcccggagac
     3001 cacgagcctg aaggaccaac tcgccgcctt cctgaagcgc cgcacccact tcgccctggt
     3061 ggtggacgaa tacggcgcac tgcagggcct ggtgacgctc gaggacatcc tcgaggagat
     3121 cgtgggcgag atcgaggacg agcacgacac cgcgccggcc ggcgtgacga ccgcgcatga
     3181 cggctcggtt tccgtggacg gatcggtgac catccgtgac ctgaaccgcg ccatgaactg
     3241 ggacctgccg gacgaggagg cggtcacggt ggcaggcttg ctgatccacg aggcccggcg
     3301 catccccgac gccggccaga ccttcagctt ccatcgccac cgcttcacgg tgctggagcg
     3361 caaggccaac cggatcacca ggctgcagat ctggccggcc gcggaacggg atgacgattg
     3421 aggccgggga accaggcctg gcggtgagcc gttccgttac cgctcagctt cctcggccat
     3481 ccgaagcagc gcaagatgac
//
LOCUS       DATAJL010000595         3639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_60258,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000595 DATAJL010000000
VERSION     DATAJL010000595.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60258"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2166
                     /locus_tag="VHN39_11415"
     CDS             <1..2166
                     /locus_tag="VHN39_11415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase C-terminal beta-propeller
                     domain-containing protein"
                     /protein_id="HEX2816998.1"
                     /translation="ALLDIVPGPDFPTGGQIIGRTGARTALMTGRGSVIMRGVATIEE
                     LRKDREAIIIHSIPYQLNKAGLVERIAELVREKRIEGISDLRDESDRQGMRIVIEMKR
                     DAAADVILNQLYRYTPLQSSFGVNMLALNRSRPEQMGLRDMVTAFVDFREEVVVRRTR
                     FELSKSRDRGHVLVGLAIAVANIDEFIHIIRSSKDPAEARERLIAKDWPAGDMLPLVE
                     LIADPRTLIISENLIRLSDEQARSILALTLSRLTGLGRDEIFGEAQTLADAIQGYLEL
                     LASREAIMAIVREELVEVREAFAVPRRTEIVEGDADVEDEDLIPRDDMVITVTHGGYV
                     KRTPLSIYRTQHRGGKGRSGMSTKDEDAVTRVFSANTHTPMLFFSSGGKVYKLKVWRL
                     PIGTPTSRGKAWVNILPIEPGESITSILPLPEDEATWDQYDVMFATRSGGVRRNKLSD
                     FVDVRRNGKIAMKLDEGDSIIGVGTCNAGVNDILLTTALGRCIRFATEEVRVFAGRDS
                     TGVRGVRLAEGDSVISMAILRSVAATPAERSAYLKHATAMRAAANGEPVDGEEAPAPE
                     DDEGDDETVTLSIERIADLGAAEEFILTVSTEGYGKRSSAYDFRRTGRGGQGLLAQDL
                     SKRGGRLAASFPIDDSDQILLVTDQGQLIRTPVGQVRIASRNTQGVIIFRTSEEEHVV
                     SVERLADTGEDEGDEDEAVEGGEGEAPGAEGPDEAPPET"
     gene            2295..2999
                     /locus_tag="VHN39_11420"
     CDS             2295..2999
                     /locus_tag="VHN39_11420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2816999.1"
                     /translation="MSYAVFFAAFLYAIAFVDNAVVPKTIDSGSVGVFLPTLIVDTLL
                     LGVFAIQHSVMARPAFKAWWTKIVPPAVERSTYVFLASLALVLLYWQWRPMPAVIWSA
                     KSPLVVEALWAVNGLGWLIVLTSTFLINHFDLFGLRQVWAYASGKAIPPPEFRTPLFY
                     RVVRHPIYLGFIMAFWVTPQMSLGHLYFALATTAYILIGIQLEERDLLAFFGDTYVAY
                     RRRVSMILPWIPNSKA"
     gene            3088..3582
                     /gene="coaD"
                     /locus_tag="VHN39_11425"
     CDS             3088..3582
                     /gene="coaD"
                     /locus_tag="VHN39_11425"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEX2817000.1"
                     /translation="MTRVGLYPGTFDPIHNGHVDIMGRAVKLVDRLVIGVAINAGKGP
                     LFSLEERVAIAEEAVAPLRNGAEIVVMPYEGLLMHFAREVGAGIIVRGLRALGDFEYE
                     FQMTAMNRQLDREIETVFLMADPHHQAIASKLVKEIALLGGDVSRFVSPAVRDRLVAK
                     AAEV"
BASE COUNT          603 a         1226 c         1199 g          611 t
ORIGIN      
        1 gccctgctgg acatcgtccc gggccccgac ttcccgaccg gaggccagat catcggccgg
       61 accggcgcgc ggacggcgct gatgaccggc cgcggctcgg tgatcatgcg tggcgtggcg
      121 accatcgagg agctccgcaa ggaccgcgaa gcgatcatca ttcactcgat cccctaccag
      181 ctgaacaagg cgggcctggt cgagcggatc gccgaactgg tgcgcgaaaa gcggatcgag
      241 ggcatctccg acctccgcga cgagagcgac cggcagggca tgcgcatcgt catcgagatg
      301 aagcgcgacg ccgcagccga cgtgatcctc aaccagcttt accgctacac cccgctgcag
      361 tcctcgttcg gcgtgaacat gctggcgttg aaccgttcgc ggcccgagca gatgggcctg
      421 cgcgacatgg tcaccgcctt cgtggatttc cgcgaagagg tggtggtccg gcggactcgg
      481 ttcgagctgt ccaagtcccg cgaccggggc cacgtgctgg tcggcttggc catcgccgtc
      541 gccaatatcg acgagttcat ccacattatc cgctcgtcca aggatccagc ggaggcgcgc
      601 gagcggctga tcgccaagga ttggccggcc ggcgacatgc tgccgctggt cgagctgatc
      661 gcagacccgc gcaccctgat catcagcgag aacctgatcc ggctctccga cgagcaggcg
      721 cgttcgatcc tggcgctgac gctctcccgc ctgaccggtc tcggccgcga cgagatcttc
      781 ggcgaggccc agacgctggc tgacgccatt cagggctatc tcgaactgct ggcgtcacgc
      841 gaggccatca tggccatcgt gcgcgaagag ctggtggagg tccgcgaagc cttcgcggtg
      901 ccccgccgca ccgagatcgt cgagggcgac gccgacgtcg aggacgagga cctgatcccg
      961 cgcgacgaca tggtgatcac cgtcacccac ggcggctatg tgaagcgcac gccgctgtcg
     1021 atttaccgga cccagcaccg cggcggcaaa ggccgctcgg gcatgtccac caaggacgag
     1081 gatgcggtga cccgcgtttt ctccgccaac acccacacgc cgatgctgtt cttctcgtcg
     1141 ggcggcaagg tctacaagct gaaggtctgg cgcctgccga tcggcacccc gacctcgcgc
     1201 ggcaaggcct gggtcaacat cctgcccatc gaacctggcg agagcatcac ctcgatcctg
     1261 ccgctgcccg aggacgaggc gacctgggac cagtacgacg tgatgttcgc cacccgctcc
     1321 ggcggggtgc ggcgcaacaa gctctccgac ttcgtggacg tgcgccgcaa cggcaagatc
     1381 gccatgaaac tcgatgaggg cgacagcatc atcggcgtcg gcacctgcaa cgcgggcgtc
     1441 aacgacatcc tgctgaccac cgcgctcggc cgctgcatcc gctttgcgac cgaagaggtc
     1501 cgggtcttcg ccggccgcga ttccaccggt gtgcggggcg ttcggctggc cgagggcgac
     1561 agcgtcatct ccatggccat cctgcgctcg gtggcggcga cgccggcgga acgtagcgcc
     1621 tatctcaagc acgccaccgc catgcgcgcg gccgccaatg gcgagcccgt cgacggcgag
     1681 gaagcgcccg cgccggagga cgacgaaggc gacgacgaga ccgtgacgct cagcatcgag
     1741 cggatcgccg acctgggcgc cgcagaggaa ttcatcctga cggtctccac cgagggctat
     1801 ggcaagcgct cgtcggccta tgacttccga cgcaccgggc gcggcggcca gggcctcctg
     1861 gcccaggacc tcagcaagcg gggcggcagg ctcgcggcct ccttcccgat cgacgacagc
     1921 gaccagattc tgctggtcac cgaccagggc cagctgatcc gcacgccggt gggccaggtc
     1981 cgcatcgcca gccgcaacac ccagggcgtg atcatcttcc gcacctccga ggaggagcac
     2041 gtcgtctccg tcgagcgcct ggccgacacc ggcgaggacg agggcgacga ggacgaggcc
     2101 gttgaaggcg gcgagggcga ggcccccggc gctgaaggtc ccgatgaggc tcccccggag
     2161 acttgatcgg tcgaacgaag tccggtgaac gctggccagc gggtttgaca gcgtcgcccg
     2221 tgtgagccag cgtcgcccgc atacagccgg ggggttgcag gatgggcaag gttctagcgt
     2281 tcgcatacgg gctggtgagc tacgcggttt tctttgctgc gttcctctac gccatcgctt
     2341 tcgtcgataa cgcggtggtc ccgaagacca tcgattcggg ctccgtcggc gtcttcctcc
     2401 cgaccctgat cgtcgacacg ctgctcctgg gtgtgttcgc gatccagcac agcgtcatgg
     2461 cccggccggc cttcaaggcc tggtggacga agatcgtgcc gccggccgtc gaacgctcga
     2521 cctacgtgtt cctggcctca ctcgccctgg tgctgctgta ctggcagtgg cgcccgatgc
     2581 cggcggtgat ctggtcggcg aagtccccgc tggtggtgga ggcgctttgg gcggtcaacg
     2641 gattgggctg gctgatcgtt ctgaccagca ccttcctgat caatcacttc gaccttttcg
     2701 gcctgcgcca agtctgggct tacgcctcgg gaaaggcgat tccgccgcct gagttccgca
     2761 cccctctatt ctaccgagtc gtgcgccatc cgatctacct gggcttcatc atggccttct
     2821 gggtgacgcc gcagatgagc ctcgggcatc tatatttcgc cctcgcgacg acggcataca
     2881 tcctcatcgg catccagttg gaggaacgcg atctcctggc gttcttcggc gacacctatg
     2941 tggcctaccg ccgccgtgtc tcgatgatcc tgccctggat tccgaactcg aaggcctagc
     3001 ggcgacgcgg ctcggcgcgc ttttccgctt gccagaaccg cgcctgacgg cgaaaggcga
     3061 agatcggttg ttgagggacc aagccgcatg acccgcgtcg ggctctatcc gggcaccttc
     3121 gaccccatcc acaacggcca cgtcgacatc atgggccggg cggtgaagct ggtggatcgg
     3181 ctggtcatcg gcgttgcgat caatgccggc aaggggccgc tgttctcgct tgaggagcgg
     3241 gtggccatcg ccgaggaagc tgtcgcgccc ctgcgcaacg gcgccgaaat cgtggtcatg
     3301 ccgtacgagg gcctcttgat gcatttcgcg cgcgaggtgg gcgccgggat catcgtgcgc
     3361 gggctgcgcg cgctgggcga cttcgaatac gagttccaga tgaccgcgat gaaccgccag
     3421 ctcgaccgcg agatcgagac cgtgttcctg atggccgacc cgcaccatca ggcgatcgcc
     3481 tccaaactgg tgaaagagat cgcgctcctg ggcggggatg tgtcgaggtt cgtcagcccg
     3541 gcggtcaggg accggctggt ggccaaggcc gccgaggtct gaccgctggc gtccaggcgt
     3601 ccgggccatt acgagtgaat ccatgaaacg aacgcttct
//
LOCUS       DATAJL010000596         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_23028,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000596 DATAJL010000000
VERSION     DATAJL010000596.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23028"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            107..1030
                     /locus_tag="VHN39_11430"
     CDS             107..1030
                     /locus_tag="VHN39_11430"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2817001.1"
                     /translation="MRSADCRLSLAPVLLLGGALVLGGALSASAQTPAAPAPARPPLV
                     VKAVKPELFMIVGAGGNTTVRVTSEGLIVVDSKNPGQPIYDELMADIAQASGGKPVKW
                     LIDTHHHADHTGNNGRFLAAGVKVVGQKNLPLELAKFVPPPNNPTLTAPAAPDVTYDK
                     TYEIKLGGKTVRLIHYSPAHTDDDTIVYFPDLKVISAGDELNLINPNFDYAGGASITG
                     WMNSLDQAMKLDWDQAIPGHGDRTMNRADVMVFRGKLKLLLDRAREQVKAGTPKDKLI
                     AAIKMDDLWTFPGTFWSGARLDGFYAEAGGK"
     gene            complement(1032..>1518)
                     /locus_tag="VHN39_11435"
     CDS             complement(1032..>1518)
                     /locus_tag="VHN39_11435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817002.1"
                     /translation="PMATAEPPPVDQPRLLPAGLFGPLRRVHAVADWSSVEPGWAIRV
                     IAAMTDPDGVPLTTDLTAFGSQSWYRLGYIHRGPSRFKLFTKVTQHGERMTVTAGLDE
                     SFQSLVSGSVDLASGETGTIRLPGGQVITVTPILRPETPQEMAAADARRYVKLERVEI
                     L"
BASE COUNT          264 a          489 c          546 g          219 t
ORIGIN      
        1 gcgcgctgtg tccaatccgg caagttgact tgggggcgcc gctggacaag cgcgggcagc
       61 gggacgagct tggctgcgcg ccgccacgcc ctcgaaggag cccgccatga gatccgccga
      121 ctgccgactt tcgctcgccc ctgtcctgct gctgggaggg gccctggtgt tgggaggggc
      181 gctgagcgcc tcggcccaga cgccagccgc cccggcgccc gcccgtccgc cgctggtggt
      241 caaggcggtg aagccggagc tgttcatgat cgtcggcgcc ggcggcaaca cgacggtgcg
      301 ggtcacctcc gaggggctga tcgtggtgga cagcaagaac ccgggtcagc cgatctatga
      361 cgagctgatg gccgacatcg cccaggccag cggcggcaag ccggtgaagt ggctgatcga
      421 cacccaccac cacgccgacc acaccggcaa caacggccgc ttcctggccg ccggcgtgaa
      481 ggtggtcggc cagaagaacc tgccgctgga actggcgaag ttcgttcccc cgccgaacaa
      541 tccgacgctg accgccccgg ccgcgccgga cgtgacctat gacaagacct acgagatcaa
      601 gctgggcggc aagaccgtgc ggctcatcca ctacagcccc gcccacaccg acgacgacac
      661 gatcgtctat ttccccgacc tgaaggtgat ctcggccggc gacgagctga acctgatcaa
      721 tcccaacttc gattatgcgg gcggggcctc gatcaccggc tggatgaact cgctggacca
      781 ggcgatgaag ctcgactggg accaggcgat ccccggccat ggcgaccgca cgatgaaccg
      841 ggctgacgtg atggtgttcc gcggcaagct gaaactgctg ctggatcggg cgcgcgagca
      901 ggtgaaggcg ggcacgccca aggacaaact gatcgccgcc atcaagatgg acgatctgtg
      961 gaccttcccg ggaaccttct ggtcgggcgc ccggctggac ggcttctacg cggaggccgg
     1021 cggcaaatag gctagaggat ctccacccgc tcgagtttga cgtagcgccg ggcgtcggcg
     1081 gcggccattt cctgcggggt ttcggggcgc aggatcgggg tcacggtgat cacctggccg
     1141 ccgggcaggc ggatggtccc ggtctcgccg gaggcgaggt cgacggagcc ggagaccagg
     1201 gactggaaac tctcgtcgag gccggcggtc acagtcatcc gctcgccgtg ctgggtaacc
     1261 ttagtgaaga gcttgaagcg gctcggaccc ctgtggatgt agcccaggcg gtaccaggac
     1321 tgcgatccga aggcagtgag gtcggtggtg agcggcacgc cgtcggggtc ggtcatggcg
     1381 gcgatgacgc ggatcgccca gcctggctcg accgaagacc agtcggcgac cgcgtgaacc
     1441 ctgcggagcg ggccgaagag cccggcgggc aggagccggg gttgatcgac gggtgggggc
     1501 tcggcggttg ccatagga
//
LOCUS       DATAJL010000597         4265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94607,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000597 DATAJL010000000
VERSION     DATAJL010000597.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4265
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94607"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..338
                     /locus_tag="VHN39_11440"
     CDS             <1..338
                     /locus_tag="VHN39_11440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEX2817003.1"
                     /translation="TELALAGVPMVIGYRLGPVTGWIVQRLLLRTAWVTLFNIAAREF
                     VAPEMIQKDCTGANLAREVALRLDDKARRDRQARAQLAALDKMGRGGPDPSEAAAEAV
                     LKIVAARVA"
     gene            complement(335..1897)
                     /locus_tag="VHN39_11445"
     CDS             complement(335..1897)
                     /locus_tag="VHN39_11445"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2817004.1"
                     /translation="MRRCVAVLAAILTMAPFAASAATARTEAGRLRGSDAGAITAYEG
                     VPFAAPPLGPLRWREPQPVQAWKGARDATAFAPACLQLGVSMPGEPDPKTSEDCLYLN
                     VWAPAGKSRAGWPVMVFIPGGGYTNGATSLPLYWGDRLARRGVIVVTVAYRLGPLGFL
                     AHPELTAESPHHSSGNYGLMDQVAALAWVRRNIRAFGGDPGRVTIFGQSAGAMSVSML
                     MTSPLAQGLFQRAIGESGGLFEPLQLAPNYSLPIAERDGAAYAKSVGATSLADLRRLP
                     GAQLLHGEAGNVSHPVIEPYALPLSPYDAFVAGKQAKVPVLVGWNAEEPRALTDLSSV
                     RAATFTQDIRKTFGPLPSAMIDAYPHADDAQAVQARVDFERDLRFAWDNWAWARLQAR
                     AGPPVYAYRFEHRPPFPAGSVRANWGASHFAELWYVFDHLDQETWAWTPSDRRLADAM
                     AGYWVAFARHGDPNGPGRAIWPRFQASEGQVLRLDDPIIAGPPPEIATLKVFDGVYAQ
                     LRGAPFGTAKAP"
     gene            2050..2889
                     /locus_tag="VHN39_11450"
     CDS             2050..2889
                     /locus_tag="VHN39_11450"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX2817005.1"
                     /translation="MRPTANATALDLRHTARRGLHDLGLGFLYWLGFVLVLEPDNLMR
                     WTPPDATAWMHEGLRLLAASLLGAAATPAILALTRRAPIEAPVIWRRSLLHLGFNLGM
                     TFALIGASCLLARMLPQAQRHPLLRDIAEQLGANGALVAASIAGLTALAHAARNVRRD
                     ASGDGSRSSLTVRQRGRFTRLELAGVNWVETQGNYLALHGAAGVTLLRRTAKSLEAEL
                     DPGRFMRVHRRAIVALDAVQAITPLAAGDAVLRLKTGETLRVSRNCRARLYQALDEVR
                     SAD"
     gene            complement(2886..4166)
                     /gene="gltA"
                     /locus_tag="VHN39_11455"
     CDS             complement(2886..4166)
                     /gene="gltA"
                     /locus_tag="VHN39_11455"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004108 - citrate (Si)-synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEX2817006.1"
                     /translation="MADTVKISIAGKTIELPILKGTTGPDVVDIRKFYAESDAFTYDP
                     GFTSTASCESKITFIDGDAGILLHRGYQIGELAEKSTFLDTCYLLLHGELPNAAQYAE
                     FEHTITYHTMLHEQFDRFFQGFRRDAHPMAIMTGAVGALSAFYHDSTDINDPEQRMIS
                     AHRLIAKMPTIAARAFKYFQGQPFVHPRNDLSYAENFLRMCFSVPAEDWKPNPVLTRA
                     MDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEEALNMLK
                     EIGTVDRIPEYIQGVKDRRYRLMGFGHRVYKNYDPRATVMQKTCHEVLDEVGDADDPL
                     LKVAMELERIALSDEYFIERKLYPNVDFYSGITLRALGFPAEMFTVLFAVARTVGWIS
                     QWKEMIEDPAYKIGRPRQLYTGALQRPYVPVDKR"
BASE COUNT          671 a         1423 c         1475 g          696 t
ORIGIN      
        1 ccacggaact ggcgctggcc ggcgttccga tggtgatcgg ctatcggctg ggtccagtga
       61 ccgggtggat cgtgcagcgg ctgttgctgc gtacggcctg ggtgacgctg ttcaacatcg
      121 ctgcccgcga gttcgtggcg ccggaaatga tccagaagga ctgcacgggc gccaatctcg
      181 cccgcgaggt ggctcttcgc ctggatgaca aggcccggcg cgaccgccag gcccgtgcgc
      241 agttggccgc cctcgacaag atggggcgag gggggccgga tccgtccgaa gccgccgccg
      301 aggcggtatt gaagatcgtg gcggcgcgcg tcgcctaggg cgcctttgcg gttccgaacg
      361 gcgcgccgcg cagctgggcg tagactccgt cgaagacctt cagggtggcg atttccggcg
      421 gcgggcccgc aatgatcggg tcgtcaaggc gcaggacctg gccctcgctc gcctggaacc
      481 ttggccagat cgcccgtccg ggcccgttcg ggtcgccgtg gcgcgcgaag gccacccagt
      541 agccggccat ggcgtccgcc agccgtcggt ccgacggcgt ccacgcccaa gtctcctggt
      601 ccaggtggtc gaacacgtac cagagctcgg cgaaatgcga ggcgccccag ttggcgcgca
      661 cggagccggc ggggaacggc gggcggtgct cgaagcgata ggcatagacc ggcggacctg
      721 cgcgggcctg cagtcgcgcc caggcccagt tgtcccaggc gaagcgcaga tcgcgctcga
      781 aatcgacccg ggcctgtacg gcttgcgcat cgtcggcgtg cggataggca tcgatcatcg
      841 cgctcggcag cggcccgaag gtcttgcgga tgtcctgcgt gaaggtcgcg gcgcgcacgc
      901 tgctgaggtc tgtgagcgcg cgcggttcct cggcgttcca gccgaccagc accggcactt
      961 tagcctgctt gcccgccacg aaggcgtcgt agggcgacaa gggcagggcg tagggttcga
     1021 tcaccgggtg cgagacgttg ccggcctcgc cgtgcagcaa ctgcgcgccc ggaagccggc
     1081 gaagatcggc cagagatgtc gcgcccacag acttggcgta ggccgcgccg tcgcgctcgg
     1141 cgatcggcag gctgtagttg ggcgccaact gcaggggctc gaacagccca ccgctctcgc
     1201 cgatggcccg ctggaagagg ccttgggcca agggcgaggt catcagcata ctgaccgaca
     1261 tggcgccggc cgattggccg aagatcgtca cccgccccgg atcgccgccg aacgccctga
     1321 tattgcgccg gacccaggca agcgccgcga cctggtccat caggccatag ttccccgagc
     1381 tgtggtgtgg cgattctgcg gtaagttcgg gatgggcgag gaaccccagc ggccccagcc
     1441 ggtaggccac tgtcaccacg atcacgccgc ggcgcgcgag ccggtcaccc cagtagagcg
     1501 gcagtgatgt ggcgccgttg gtgtagccgc cgcccggaat gaacaccatc accggccagc
     1561 ccgcgcgaga cttacccgcc ggcgcccaga cgttcagata gaggcaatcc tcgctggtct
     1621 tcggatccgg ctccccgggc atggaaacgc cgagctgcag gcaggccggc gcgaaggcgg
     1681 tggcgtcgcg cgcacccttc caggcttgga ccggttgcgg ctcgcgccag cgcagcgggc
     1741 cgagcggcgg cgccgcgaac ggcacgccct cgtacgcggt gattgcaccg gcgtccgagc
     1801 cgcgcagtcg cccggcttca gtacgggccg tcgccgctga cgccgcaaag ggcgccatcg
     1861 tcaggatcgc cgccagcacc gctacacacc gcctcatcgt tcgcctcacg cctccatgct
     1921 ctgcatcgga gtctggcaag gcgggcttcg gcgcgatagc cgtcggcccc gcgtctcgtc
     1981 ccgggccatg aacgcatcgt cacaattcag gcgatggacg tggggcgagg gctctcgcac
     2041 agttcggcca tgcgcccgac cgcgaacgcc accgccctcg atctccgtca taccgcccgc
     2101 cggggcctcc atgacctggg cctgggcttc ctctactggc tggggttcgt cctggtcctc
     2161 gaaccggaca acctgatgcg ctggacaccg cccgacgcga cggcgtggat gcacgagggc
     2221 cttcgcctgc tggcggccag cctgctgggg gcggcggcaa cccccgcgat cctggccctt
     2281 acacggcggg ctccgatcga ggcgccggtc atctggcggc ggagcctgct gcatctgggc
     2341 ttcaacctgg gcatgacatt tgcgctgatc ggggcctcat gtctgctggc ccggatgctg
     2401 ccgcaggcgc agcgccatcc gctcctgcgc gacatcgccg agcagctggg cgccaatggc
     2461 gcgctggtcg ccgcctcgat cgccggcctc accgcactcg cccacgccgc gcgcaacgtc
     2521 cggcgcgacg ccagcgggga tggctcccga tccagcctca cggtccgcca gcgaggccgt
     2581 ttcacccgtc ttgagctggc cggggtgaat tgggtcgaga cccagggcaa ttacctcgcc
     2641 ctgcacggcg cggctggggt gaccctgttg cgtcggacgg ccaaaagcct ggaagccgag
     2701 ctcgatcccg gccggttcat gcgggtccac cgccgcgcca tcgtcgccct ggacgcggtg
     2761 caggcgatca cgccgctcgc ggccggcgat gcggttctgc gtctgaagac gggcgaaacc
     2821 ctacgcgtca gccgaaactg ccgcgctcgg ctgtatcagg ccttggacga ggttcggagc
     2881 gccgactagc gcttgtcgac cggcacgtag gggcgttgca gggcgccggt gtagagctgg
     2941 cgggggcggc cgatcttgta ggccgggtcc tcgatcatct ctttccattg gctgatccag
     3001 ccgaccgtgc gggcgaccgc gaacagcacc gtgaacatct ccgccgggaa gccgagcgcg
     3061 cgcagggtga tgcccgaata gaagtcgacg ttcgggtaga gcttgcgctc gatgaaatac
     3121 tcgtccgaga gcgcgatgcg ctccagttcc atagccacct tcagcagcgg atcgtccgcg
     3181 tcgccgacct cgtccagcac ctcgtgacag gtcttctgca tgaccgtcgc gcgcggatca
     3241 tagttcttgt aaacccggtg gccgaagccc atcagccggt agcgtcggtc cttaacaccc
     3301 tgaatgtact ccggaatacg atcgacggtg ccgatctcct tgagcatgtt cagcgcctct
     3361 tcgttggccc cgccgtgcgc gggaccccag aggcaggcga tgcccgcggc gatgcaggcg
     3421 aacggattgg cgccggacga accggccaga cgcaccgtcg aggttgacgc gttctgctcg
     3481 tggtcggcgt gcaggatgaa gatgcggtcc atggcccggg tcagcaccgg attgggcttc
     3541 cagtcctcag ccgggaccga gaagcacatg cgcaggaagt tctccgcgta ggataggtcg
     3601 ttgcgcggat ggacgaaggg ctggccctgg aagtatttga aggcccgcgc ggcgatggtc
     3661 ggcatcttgg cgatcaggcg atgcgccgag atcatccgct gctcgggatc gttgatgtcc
     3721 gtgctgtcgt gatagaaggc cgagagcgcc ccgaccgcgc cggtcatgat cgccatcggg
     3781 tgagcatccc gacggaagcc ttggaaaaac ctgtcgaact gctcgtgcag catggtgtgg
     3841 taggtgatcg tgtgctcgaa ctcggcatat tgcgcggcgt tcggcagctc gccgtgcagc
     3901 agcaggtaac aggtgtcgag gaaggtcgat ttctcggcca gctcaccgat ctgatagccg
     3961 cggtgcaaca ggatgcccgc gtcgccgtcg atgaaagtga tcttgctttc gcaactggct
     4021 gtggaggtaa agccggggtc gtaggtgaag gcgtcgctct cggcgtagaa cttgcggatg
     4081 tcgacgacat ccgggcccgt cgtgcccttc aggatcggca actcgatggt cttgccagca
     4141 atgctgatct tcaccgtgtc ggccatgcct gcccctccgt atagccgtga cgtgaaacgc
     4201 ccgttcgaac ggcttatagc gggttagccg ccaagcgaaa gcgcatcgtc aaggcggccg
     4261 aggct
//
LOCUS       DATAJL010000598         4747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_49038,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000598 DATAJL010000000
VERSION     DATAJL010000598.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4747
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49038"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /locus_tag="VHN39_11460"
     CDS             <1..573
                     /locus_tag="VHN39_11460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817007.1"
                     /translation="VGGGAGAAAKLIRESVEGYAVAHCAVQRSGALSGCQVIKEEPER
                     RDFGRAATKLVETKFKVAPQLAAAAHSSALWVDVPIRLPPPAQTDRTVMAPAWLTGVD
                     ARTTPTVFPPEAVASGLTTGRGIARCVVGADGVLANCAPESAEPAGLGFAEAAAKLAT
                     GMKMNLWTYDAAPVEGGVVHVPVRLNLKGG"
     gene            574..1701
                     /locus_tag="VHN39_11465"
     CDS             574..1701
                     /locus_tag="VHN39_11465"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2817008.1"
                     /translation="MLAQILSLLAAAAPAPDTPARTVSPVTVTSQGPKPPIDATVDMQ
                     SDDKASGEFVAIWPGAAYRAGADAKVILSCKINIHGLAEWCGITSESPAGKNFGAAAL
                     QMRPTFKLKPAMGPDGPIAAMMNIAVKFRAPLHQIDTEEFKAAGAINFFGRGTTDISY
                     ATFLGVPMEMEPVTMLSRPVWSQAPGFDDMAAAYPAKGAGAEGYVVAHCQVLSSGDLK
                     NCGIVKEMPWKLGFAKAALPLTHKFKVIPALATAPHSTPMWVDIPIRMPPPGAEKDRA
                     VLSPSWLTGVDPGTTPGVFPPEAAARGLTVGRGVAQCVVGPDGGLTRCMPATGDPEGL
                     GFSEAVAKLATGLKINLWSADASPVDGGKLRVEMRLTLKGG"
     gene            complement(1703..2269)
                     /locus_tag="VHN39_11470"
     CDS             complement(1703..2269)
                     /locus_tag="VHN39_11470"
                     /inference="COORDINATES: protein motif:HMM:NF013231.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX2817009.1"
                     /translation="MSPPQQSRRGSVDPTAEFPFAVDDYVLHLLAAIHQFRDSTLDGA
                     LRGLRLNVGRYRLLGVLNRFGASTMTELANFTAMQRTTLTRIADHLVAEQWVERRGEA
                     RDRRQVLLELTDQGRETYREALGIVFELNGKLLDSVSEDAARSTARVLIRVVENLAPN
                     RVARDSIIHFSREALGSDKGGSAVKAPG"
     gene            2396..2737
                     /locus_tag="VHN39_11475"
     CDS             2396..2737
                     /locus_tag="VHN39_11475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817010.1"
                     /translation="MRYLSIYRPESSVEGGMPSPDHMAAMGRLIEEWTAKGALISTEP
                     LTPRDQCARLRLSGGEFTVSEETVRAGGFAFLNAGSKDEAIELCKTFLKVAGDGTCEI
                     RQILEFAPQPA"
     gene            complement(2770..3696)
                     /locus_tag="VHN39_11480"
     CDS             complement(2770..3696)
                     /locus_tag="VHN39_11480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2817011.1"
                     /translation="MRTFASIAKLAASAVSAFLLAGPALAAVQPFPANFKTQTIATNG
                     TKIFVRVGGHGPGVVLLHGYGETGDMWQPLAVKLAKAHTVVIPDLRGMGLSAHPATGY
                     DKKNQGRDIAGVLDALHIGKVDVVTHDIGNMVGYAFVAEQPERVTHLVLMDAPIPGVG
                     PWDEILKSPLLWHFRFGGPDMERLVKGRERIYLDRFWNEFSADPKNFDEASRVHYAKL
                     YARPLAMHDGFEQFHAFDQDVIDNKVFLAKGPLTMPVLAIGGDKSFGPEMAVVAKAAA
                     SNVQGVVIPRAGHWVMEENPTDTVAAVIKFLN"
     gene            complement(3793..4317)
                     /locus_tag="VHN39_11485"
     CDS             complement(3793..4317)
                     /locus_tag="VHN39_11485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817012.1"
                     /translation="MKPLILALALTATACGALAQPAKLKPELAGIGFLVGDWTSGAGK
                     VADTGDTDRGGSRITIEADGAALLRSDHTETFDAHGKPTGAFHQIMLIYPEGGTLRAD
                     YSDGEGHVIHYVSAAVTAGRSVVFSGAAQPAAPSFRLAYELKAPGELAVDFAMVLPGG
                     AVRPIASGTLHKAR"
     gene            complement(4329..>4747)
                     /locus_tag="VHN39_11490"
     CDS             complement(4329..>4747)
                     /locus_tag="VHN39_11490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2817013.1"
                     /translation="YGGFMSMWVVTHSQRFKAAVAGAGIANWVSYYGQNGIDQWMVPF
                     FGSTVYDDASVYDRLSPIRTIKDAKTPTFIYVGERDVECPPAQSLEFHHGLDAMGVPN
                     SLVIYAGEGHGIREAEHKADLKKRILGWFDHYLGQP"
BASE COUNT          727 a         1533 c         1734 g          753 t
ORIGIN      
        1 gtcggcggcg gggccggggc cgcggcgaag ctcatcaggg agagcgtcga gggctatgcc
       61 gtggcccact gcgccgtcca gcgctccggc gccctgagtg gctgtcaggt gatcaaggag
      121 gagccggagc ggcgcgactt cggccgagcc gccaccaaat tggtggagac gaagttcaag
      181 gtcgccccgc agctcgccgc ggctgcgcac tcgagcgcgc tctgggtgga cgtgccgatc
      241 cgcctgccgc cgcccgcgca aaccgaccgc acggtcatgg cgccggcgtg gctgaccggc
      301 gtcgacgcca ggaccacgcc cacggtcttc ccgccggaag ccgtcgccag cgggctcacc
      361 acgggccgcg ggatcgcccg ctgtgtggtg ggggccgatg gcgtgctggc gaactgcgcg
      421 ccggagtccg ccgagcccgc gggcctgggt ttcgccgagg ccgccgccaa gctggccaca
      481 ggcatgaaga tgaacctctg gacctacgac gccgcgccgg tggagggcgg ggtggtccac
      541 gtgccggtcc ggctgaacct gaagggcggc tagatgctgg ctcagatcct ctcacttctc
      601 gccgccgccg cgccggcgcc cgacacgccg gccaggaccg tgtcgccggt gaccgtgacg
      661 tcccagggtc ccaagccgcc gatcgacgcg accgtcgaca tgcagagcga tgacaaggcg
      721 tccggcgagt tcgtggccat ctggcccggc gccgcctatc gcgccggcgc cgacgccaag
      781 gtgatcctga gctgcaagat caatatccac ggcctggccg agtggtgcgg gatcacgtcg
      841 gagagcccgg ccggcaagaa cttcggggcc gcggccctgc agatgcgccc gaccttcaag
      901 ctgaagcctg cgatggggcc ggacgggccg atcgcggcga tgatgaacat cgcggtgaag
      961 ttccgcgcgc cgctccatca gatcgacacg gaggagttca aggcggccgg cgcgatcaat
     1021 ttttttggca ggggcaccac cgatatcagc tacgcgacct tcctgggggt gcccatggaa
     1081 atggagccgg tgaccatgct cagccggccg gtctggtccc aggcgcccgg tttcgacgac
     1141 atggcggcgg cctatccggc caagggcgcc ggggcagagg gctatgtggt ggcccattgc
     1201 caggtgctga gttcgggcga cctgaagaac tgcgggatcg tcaaggagat gccttggaaa
     1261 ctcggcttcg ccaaggcggc cctgccgctg acgcataagt tcaaggtcat ccccgcgctg
     1321 gccacggcgc ctcactcgac gcccatgtgg gtggacatcc cgatccgcat gccgccgccc
     1381 ggggccgaga aggaccgggc agtgctgtcg ccgagctggc tgacgggcgt cgatcccggc
     1441 acgacgccgg gcgtcttccc gccggaggcc gccgcgcggg gcctgacggt gggccgtggc
     1501 gtcgcccagt gcgtggttgg gccggacggc ggcctcacgc gatgcatgcc ggcgacaggc
     1561 gacccggaag gtctggggtt ctcagaggcg gtcgccaagt tggctacggg cctgaagatc
     1621 aatctctggt cggccgatgc gagcccggtg gacggcggca agctccgggt cgagatgcgt
     1681 ctaacgctca agggcggcta ggtcagcccg gcgccttgac cgccgaaccc cccttgtctg
     1741 aacccagggc ctcgcggctg aagtggatga tgctgtcgcg ggcgacccgg ttgggcgcca
     1801 ggttctcgac cacgcggatc agcacccggg ccgtcgaacg cgcggcgtcc tcggagacgc
     1861 tgtccagcag ctttccgttg agctcgaaca cgatgccaag ggcttcccgg taggtctcgc
     1921 ggccctggtc ggtcagttcc agcaggacct ggcggcggtc acgggcctcg ccccggcgct
     1981 cgacccattg ctcggcgacg aggtggtcgg cgatgcgcgt cagcgtggtg cgctgcatgg
     2041 ccgtgaaatt ggccagttcg gtcatggtgc tggcgccaaa ccggttgagc acgcccagca
     2101 ggcggtagcg gccgacgttg agcctcagcc cgcgcagggc gccgtccagc gtcgagtcgc
     2161 ggaactggtg gatggcggcc agcagatgca gcacatagtc gtccaccgcg aacggaaatt
     2221 ccgccgtcgg atcaaccgat ccccggcgac tctgctgtgg cggactcatg gcgcgactat
     2281 ccggtaatcg cgaggcggct gccaagagcg caattcttgt gggccgtctt ttgaccgggt
     2341 gtcggatcga gcggagcgcc ggcgtccttg gggaaacctc ttaaggagac gaccgatgcg
     2401 ctatctttcc atctaccggc ccgagagcag cgtcgaaggc ggcatgccca gccccgatca
     2461 catggcggcc atgggccggc tgatcgagga atggaccgcc aagggcgcgt tgatctccac
     2521 cgagccgctg acgccgcgcg accagtgcgc gcgcctgcgg ctgtcgggcg gcgagttcac
     2581 ggtgtccgag gagacggtgc gggcgggcgg cttcgccttc ctgaacgccg gctccaagga
     2641 tgaggcgatc gagctctgca agaccttcct gaaggtggcc ggcgacggga cgtgcgagat
     2701 ccgccagatc ctggagttcg cgccgcagcc ggcctgaggg ctcaggcccc ggcgcgctgt
     2761 cggctgcgat cagttcagga acttgatgac ggccgcgacc gtgtcggtcg ggttttcttc
     2821 catcacccaa tggccggcgc gcgggatcac cacgccctgc acattgctgg ccgcggcctt
     2881 ggcgaccacg gccatttccg gaccgaaaga cttgtcgcca ccgatagcca ggaccggcat
     2941 cgtgagcggg cccttggcca ggaagacctt gttgtcgatg acgtcctggt cgaaggcgtg
     3001 gaactgctcg aagccgtcat gcatggcgag cggccgggcg tagagcttgg cgtagtggac
     3061 gcggctggcc tcatcgaagt tcttcgggtc ggcggagaac tcattccaga agcggtcgag
     3121 gtagatgcgc tcgcggccct tcaccaaccg ctccatgtcc ggcccgccga agcggaagtg
     3181 ccagaggagt gggctcttga ggatctcatc ccagggtccg acgccgggga tcggcgcgtc
     3241 catcaggacg aggtgggtga cccgctccgg ctgctcggcg acgaaggcgt agccgaccat
     3301 gttgccgata tcgtgggtga ccacatcgac cttgccgatg tgcagggcgt cgaggacgcc
     3361 ggcgatgtcg cggccctggt tcttcttgtc gtagcccgtg gccgggtggg ccgagagtcc
     3421 cataccgcgc aggtcgggga tgacgacagt gtgggccttg gccagtttga cagccagggg
     3481 ctgccacatg tcgccggtct cgccgtagcc gtgcagcaac acgacgccgg ggccgtggcc
     3541 gcccacccgg acgaagatct tcgtgccgtt ggtggcgatg gtctgggtct tgaagttggc
     3601 ggggaagggt tgcaccgcgg ccagggcggg gccggcgagg aggaaggcgc tgacagcgct
     3661 ggcggcgagc ttggctatcg aagcgaacgt tcgcatgtcc gtagctcccg tctcgtagtg
     3721 tcggatgccc gacacattgg acgatgccac gcaatcgtcg acgtacccaa catcccgata
     3781 tgatcaggcg ggctagcggg ccttgtgcag cgtgccgctg gcgatgggcc ggaccgcgcc
     3841 gccgggcagg accatggcga agtccacggc gagctcgccg ggcgccttca gctcataggc
     3901 caggcggaag ctgggcgccg cgggctgggc cgcgccgctg aagaccacgg aacggccggc
     3961 ggtcacggct gcggagacgt agtggatgac atggccctcg ccgtcggaat agtcggcgcg
     4021 cagggtcccg ccctccggat agatcagcat gatctggtgg aaggcgccgg tgggcttgcc
     4081 gtgggcgtcg aaggtctcgg tgtggtcgct gcgcagcagg gccgcgccat cggcctcgat
     4141 ggtgatcctc gacccgccgc ggtcggtgtc cccggtgtcg gcgaccttgc ccgccccgct
     4201 ggtccagtcg ccgaccagga agccgatccc ggccagttcg ggcttcagct tggccggttg
     4261 ggccagcgcg ccgcaggccg tggcggtcag cgcgagcgcg aggatcagag gcttcatcgt
     4321 ggcgctacct agggctggcc gaggtagtgg tcgaaccagc cgaggatgcg cttcttgagg
     4381 tcggccttat gctcggcctc gcggatgccg tggccctcgc cggcgtagat caccaggctg
     4441 ttgggcacgc ccatggcgtc gaggccgtgg tggaattcca ggctctgagc cggcgggcat
     4501 tcgacgtcgc gctcgccgac atagatgaag gtcggggtct tcgcgtcctt gatggtgcgg
     4561 atcggcgaga ggcggtcgta gacggatgcg tcgtcgtaga cggtcgatcc gaagaacggg
     4621 accatccact ggtcgatgcc gttctggccg tagtagctga cccagttggc gatgccggcg
     4681 ccggccaccg cggccttgaa gcgctgggag tgggtgacca cccacatgct catgaagccg
     4741 ccgtagg
//
LOCUS       DATAJL010000599         2143 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_60355,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000599 DATAJL010000000
VERSION     DATAJL010000599.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60355"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>2143
                     /locus_tag="VHN39_11495"
     CDS             <1..>2143
                     /locus_tag="VHN39_11495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817014.1"
                     /translation="ALLMRLTPTELLPIQGRLQRLARLRQTAPSPTRQVMRVDEPYKL
                     FTPPSFDVALGLGAQTIEPKTPTRYDIRMGGDLLYAGLQAYVGSDDAGRANTARVLLE
                     KRSLEGDLLGPLHARVVGLGDVFTPGLSIGPRSLGGRGFELSTVPLDQTNVFNRVDLR
                     GELPLGDDVELYVNDVLQAAQQTAVNGRYEFLNVPLTQGVNVVRIVTYGPRGQRSEET
                     RIINASGGLLRPGQMTLEFGAVDQNQPLFQVRSLDPLAIDRGLGRPRVVANLNYGLTQ
                     YLTAALGAAVYSDTLGVQRDLYTAGLRTSIKGFATQVDVAGDNHGGEGASIDVAGRIL
                     GANALFRHSEYRGGLLDENNAEATIDRPLTRRSEVTVDDNVRFGTQLIPLTVRALRDV
                     YADGGRAWIGQVRGTTSVGSILYSTGFEYDRNTAVNGEVTDLLRGSLGFSTFRNYQWQ
                     VRGTLNYDLVPNVRPSDLEILVDRTISNTWSLRFGATERLDTPKGTDLLVGSTTRTKF
                     GDLALTGEYNTADSSWRFGAQMNFGIGYNPQTGYQLTRSGPGSGGSVAFHAFIDANGN
                     GKFDPGERPVANVSLEGGEFRAKTDADGRAYLSGLGAGSTARLLVGITEIENQQVKTP
                     PSVVEFAPRPGGVTVIEYPMRPTGEVMINIKLRRPNQPPVGLSATRVRLVDDKGVALE
                     GVTEFDGSVNFQDVPAGTYRVELDKDQSARLR"
BASE COUNT          352 a          783 c          678 g          330 t
ORIGIN      
        1 gccctgctga tgcggctgac ccccaccgaa ctcctgccca ttcagggccg gctgcagcgc
       61 ctagctcggc tacgccagac ggcgccctcc ccaacccgcc aggtgatgcg ggtcgacgag
      121 ccctacaagc tgttcacccc gccctccttc gacgtggcgc tgggactggg cgcccagacc
      181 atcgagccga agacgccgac ccgctatgac atccgcatgg ggggcgacct cctctacgcc
      241 ggcctgcagg cctatgtcgg ctccgacgac gccggccgcg ccaacaccgc ccgcgtcctg
      301 ctcgaaaagc gttcgcttga gggggatctg ctggggccgc tacacgctcg cgtggtgggt
      361 ctgggcgacg tcttcacgcc aggcctatcg atcggaccca ggagcctcgg cggtcgcggg
      421 tttgagctct ctaccgtgcc gctcgaccag accaacgtct tcaaccgcgt cgacttgcgc
      481 ggcgagttgc cgctgggcga cgatgtcgag ctctacgtca atgacgtcct gcaggccgct
      541 cagcagacgg ccgtcaacgg ccgctacgaa ttcctcaacg tgccgctcac ccagggcgtc
      601 aatgtggtcc gcatcgtgac ctatggcccg cgcggccagc gcagcgagga gacccggatc
      661 atcaacgcca gcggcggcct gctgcgcccc ggccagatga ccctcgagtt cggcgccgtg
      721 gaccagaacc agcctttgtt ccaggtccgt agcctcgacc ccctcgccat cgaccgcggc
      781 cttggccggc cgcgggtggt ggccaacctc aactacggcc tgacccaata tctcaccgcc
      841 gccctcggcg ccgcggtcta ctccgacact ctgggagtcc agcgcgacct ctacaccgcg
      901 ggcctgcgca cctcgatcaa gggctttgcg acccaggtcg acgtggccgg ggacaaccac
      961 ggcggcgaag gggcttccat cgacgtcgcc ggccgcatcc tgggcgccaa tgccctgttc
     1021 cgccattcgg agtatcgcgg cggcctgctg gacgaaaaca acgccgaggc gaccatcgac
     1081 cggccgctga cccggcgctc cgaggtcacc gtcgatgaca atgtgcgctt cggaacccag
     1141 ctcatcccac tgacggtgcg tgcgctgcgc gacgtctatg ccgacggtgg gcgcgcctgg
     1201 atcggccagg tgcgcggcac aacctcggtg ggcagcatcc tctactcgac cggcttcgag
     1261 tacgatcgca acaccgccgt gaacggcgag gtcaccgacc tgcttcgcgg atccctcggc
     1321 ttctccacat tccgcaacta ccaatggcag gtgcgcggga cgctgaacta cgatctcgtc
     1381 ccgaacgtca ggccgagcga cctggagatc ctcgtcgacc ggacgatctc caacacctgg
     1441 tcgctgcggt tcggcgccac cgagcggctg gatacgccca agggcacgga tctgctggtc
     1501 ggcagcacca cccgcaccaa gttcggcgac ctggcgctga ccggcgaata caacaccgcc
     1561 gactcgagct ggcggttcgg cgcgcagatg aacttcggca tcgggtacaa cccgcagact
     1621 ggctaccagc tcacccgctc tggccccggc tccggggggt ctgtcgcgtt ccacgccttc
     1681 atcgacgcca acggcaacgg caagttcgat cccggcgagc gcccggtggc caacgtctcg
     1741 ctcgagggcg gcgagtttcg ggccaagacg gacgcggatg gccgggccta cctcagcggc
     1801 ttgggcgccg ggtccacggc gcggctgctg gtggggataa ccgagatcga gaaccagcag
     1861 gtcaagacac cgccgtcggt cgtcgagttc gccccacgcc ctggcggcgt gaccgtcatc
     1921 gaatacccca tgcgcccgac cggcgaggtg atgatcaata tcaagctgcg gcggccgaac
     1981 cagccgcccg tcggcctttc ggccacccgc gtgcggctgg tggatgacaa gggcgtagcg
     2041 ctcgaaggtg tcaccgagtt cgacggctct gtgaacttcc aggatgtgcc ggccgggacc
     2101 taccgggtcg agctcgacaa ggaccagtcc gcgcgcctgc gca
//
LOCUS       DATAJL010000600         6535 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10403,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000600 DATAJL010000000
VERSION     DATAJL010000600.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6535
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10403"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..208)
                     /locus_tag="VHN39_11500"
     CDS             complement(<1..208)
                     /locus_tag="VHN39_11500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817015.1"
                     /translation="MNKPVRLATPETRPHVDRETYLKQGYVIVRGALDIAALAAINTE
                     ISELFAVQLRRLRLPVDGGAAAPRR"
     gene            complement(205..957)
                     /locus_tag="VHN39_11505"
     CDS             complement(205..957)
                     /locus_tag="VHN39_11505"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2817016.1"
                     /translation="MTAARDLNREFADTEDRKYAYDFDYRMHGYMLRAFEGKLPPGRA
                     LELGCFEGEFTRRLAATYPDLTTVEGSSELIEIARATAPQGVSFVLSRFEDFEPDRPF
                     DAVFLTHTLEHLDEPVELLRRIARWLTPAGRLFLVVPNAHAASRQIAVAMGLITHPTA
                     VTPGEHEHGHRRTYDLAALTAHVSEAGLGLVETGGVFFKPFANFQLDKLIASGAIGED
                     YLEGCFKLGALYPDLCASIYAICAPPGAGDTL"
     gene            complement(954..1745)
                     /locus_tag="VHN39_11510"
     CDS             complement(954..1745)
                     /locus_tag="VHN39_11510"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX2817017.1"
                     /translation="MKLDRSLDAFNRQMTDKGWVVFEGAVGPDLVSRMTADLEAAWDV
                     CREIQVKNGVANDADRTVHHLIGIKPSFLEYLDESEVLDPCLEAYFGGRYILNSFGGA
                     INTRGRTSYAQRIHRDIRSYSGDMPLLLNTLVMLDAFTPENGATYMLSGSHKAAEKPS
                     DEDFYARAERAVGPAGSVLVFNSNVWHAGGNNTTDHTRRSVTPMYCRPFIKQQFDYPR
                     VLGYDAGPSLQPYTRQVVGYNARVPANLDEWYQPPERRMYRGDQG"
     gene            complement(1742..2500)
                     /locus_tag="VHN39_11515"
     CDS             complement(1742..2500)
                     /locus_tag="VHN39_11515"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TylF/MycF/NovP-related O-methyltransferase"
                     /protein_id="HEX2817018.1"
                     /translation="MSDEVPIEATTAQAEGFAHRERLRQMMQDSPLPPDELMFNLGLY
                     VRSSLLVKFLVLHDAYRRVASVPGALIEFGTWRGQNLVLLENLRAIHEPFNKQRPIIG
                     FDTFAGYPEEAGMAAKSTETHSGYNTGGSYPDYLGELLQVHEGMNAFGHIRGGHQLIA
                     GDVVETAPRYFADHPETLVAFAFFDMGPYEPTLAALKAILPHTVPGSVLLFDELTWAG
                     APGEAIAFKEVFRDLRYTIEKCQFYPSKSLVTLL"
     gene            complement(2497..3426)
                     /locus_tag="VHN39_11520"
     CDS             complement(2497..3426)
                     /locus_tag="VHN39_11520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817019.1"
                     /translation="MGWRIMGRIFDPSEHDWAGTHAQVPTALVYEDKVRVFYADRFAD
                     GRSYTTYLDLDRADLSRVTYFHKDPILGFGAPGTFDDDGAMPSFPVRENGRVLLYYSG
                     WNRGVTVPYRNSVGIAVSDDDGDNFRRLYEGPVLERNPLEPYIAVTPTLLKEGELWRM
                     WYISGVRWVEVEGKFEPVYVIKYASSRDGVSWDRPNHLCIPPTHDREAFSHPTVIRDG
                     DRYRMWYCFRDSADYRDGAGAYRIGYAESADGLDWRRMDDACGLGVGQTPWASTMTCY
                     PFVTQVDGRIVMFFNGNGFGRSGFGYAVLEEAA"
     gene            complement(3437..4099)
                     /locus_tag="VHN39_11525"
     CDS             complement(3437..4099)
                     /locus_tag="VHN39_11525"
                     /inference="COORDINATES: protein motif:HMM:TIGR03570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HEX2817020.1"
                     /translation="MRDVIIFGIGQVAEVIHHYLTEEGGRNVVAFTVDAAYRTAEDVF
                     GVPVVDFEDVEQRFPPDTHEMFVAISFKGVNKLREAKVAEAEAKGYALTSHVSPRASV
                     WSKLVVNPNTIIMENNVIQPFVTIGRNVIMWSGNHIGHHTRIGDNCFIASQAVISGNC
                     EIGAGTFIGVNATLRDNINIGARNVIGAAALILKSSDDNAVFVGAATEAARVTSDRLR
                     SI"
     gene            complement(4155..5309)
                     /locus_tag="VHN39_11530"
     CDS             complement(4155..5309)
                     /locus_tag="VHN39_11530"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEX2817021.1"
                     /translation="MAQTRALSHAQRQVAPATVPVARPRLPNAEAILPYLQQIDEARW
                     YSNFGPLLTGLEQRLADRFAAPTQVITVTNATQALTLALQAMDLAPGGHVVLPAWTFV
                     ATAHAVVQAGLKPWFVDVDPATWMLDPARVAALSPDLSRQVVAVIPVCAFGAMPDIDA
                     WLAFRETTGVPVLIDAAAAFDTLHDARLPAVVSLHATKVLGLGEGGYLATEDAALAHR
                     VRLATTFGFYGSRDSQIAATNAKLSEYAAAVGQAALDNWPGDRLRWMRTAQHLRIALI
                     GRPEVRFQDGWGSDWVTSVCTVGLPRGSAAAVAAFLREVGVDTRQWWGDGCHTSTAFR
                     ECRREPLGFTDHLACSTLGLPFSIDMDADEIARVAAALDRALNNAQMVER"
     gene            complement(5389..6423)
                     /gene="pseG"
                     /locus_tag="VHN39_11535"
     CDS             complement(5389..6423)
                     /gene="pseG"
                     /locus_tag="VHN39_11535"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEX2817022.1"
                     /translation="MSGPSILIVVDAGPAVGGGHVMRSLTLAGALEAQGATCRFVIPP
                     AAEAIFAAFAPEAERLAGASNAPGDLAAAVKPHAFDAIVFDHYGLSEGDHRAMAQGKP
                     ALAIDDLADRVLAADLVLDSGPARRAEDYDGLIPEGARLLLGPQYAPVRPEFAALRDT
                     ALAWRGEPVGRVLVSLGLTDVDGITGRVVERLRPKVSDVGIDIVLGAEAPSLASLTKI
                     ARRDTRIALHIDSLQMAQLTAEADFAIGAAGSSTWERCTLGLPTLMLVLAESQRAAAQ
                     TLAEREAALVVDAGAADFEALFDRALMRIATDANLRRQLATASAELCDGQGGPRVAEA
                     FLKLIAARAT"
BASE COUNT         1036 a         2109 c         2355 g         1035 t
ORIGIN      
        1 ctcttcgcgg tgcagctgcg ccgccatcga caggcaggcg caggcggcgc agctgcaccg
       61 cgaagagttc gctgatctcg gtgttgatcg ctgccagggc ggcgatgtcg agggcgccgc
      121 ggacgatgac gtagccctgc ttgaggtagg tctcgcggtc gacgtgcggg cgggtctcgg
      181 gcgtcgcgag acggacgggc ttgttcatag ggtgtctccg gcgcctggcg gggcgcagat
      241 ggcgtaaatg ctggcgcaga ggtccgggta gagggcgccg agcttgaagc agccttcaag
      301 gtagtcctcg ccgatggcgc cgctggcgat cagcttgtcc aactggaagt tggcgaaggg
      361 cttgaagaac accccgccgg tctcgaccaa tccgagaccg gcctcggaga cgtgagcggt
      421 gagggccgcc aggtcgtagg tccgccggtg cccatgctcg tgctcacctg gcgtcaccgc
      481 tgtcggatgc gtgatcagcc ccatggccac ggcgatctgg cgcgaggccg cgtgcgcgtt
      541 gggaaccacc aggaacaggc gtcccgcggg cgtgagccac cgggcgatcc tacgcagcag
      601 ctccacgggc tcgtccaggt gttcgagggt gtgggtcagg aagacggcat cgaagggtcg
      661 gtcgggctcg aagtcctcga accggctgag cacgaagctc acgccctgcg gcgccgtggc
      721 gcgggcaatc tcgatcagct cgctggagcc ttcgaccgtg gtgaggtcgg ggtaggtcgc
      781 ggccaggcgc ctggtgaact cgccttcgaa gcagcccagc tcgagcgccc ggcccggcgg
      841 cagcttcccc tcgaacgcgc gcagcatgta gccgtgcatg cggtagtcga aatcgtaggc
      901 gtacttgcga tcctcggtgt cggcgaactc gcggttcagg tcgcgcgcgg cggtcatcct
      961 tgatcacccc ggtacatgcg ccgctcgggc ggctggtacc actcgtcgag gttggccggc
     1021 acgcgggcgt tgtagccaac cacctggcgt gtgtacggct ggagcgaggg cccggcgtcg
     1081 tagcccaaca cccgcggata gtcgaactgc tgcttgatga agggccggca atacatcggt
     1141 gtgaccgacc ggcgcgtgtg gtccgtcgtg ttgtttccgc cggcgtgcca gacgttggag
     1201 ttgaagacca gcacgctgcc ggccggtccg accgcgcgct cggcgcgggc gtagaagtcc
     1261 tcgtccgagg gcttttccgc ggccttgtgc gacccgctca acatgtaggt cgcgccgttc
     1321 tcgggcgtga aggcgtccag catcaccagg gtgttgagca ggagcggcat gtcgccggaa
     1381 taggaacgga tgtcgcggtg gatccgctgc gcataggaag tccgcccgcg ggtgttgatc
     1441 gctccgccga aggaattgag gatgtaacgg ccgccgaagt aggcctcgag acaggggtcc
     1501 aggacctcgc tctcgtcgag gtattccagg aagctgggtt tgatgccgat caggtggtgg
     1561 acggtgcggt cggcgtcatt ggccacgccg ttcttcacct ggatttcgcg gcagacgtcc
     1621 caggcggctt caaggtcggc ggtcatccgg ctcacgaggt cgggcccgac ggcgccttcg
     1681 aacaccaccc agcccttgtc ggtcatctgg cggttgaacg cgtcgaggct gcggtcgagt
     1741 ttcatagcag ggtgaccagg gacttggacg gatagaactg gcacttctcg atggtgtagc
     1801 gcaggtcgcg gaagacctcc ttgaaggcga tcgcctcgcc gggcgcgccg gcccaggtga
     1861 gctcgtcgaa caagaggacg ctgcccggca ccgtgtgcgg caggatcgct ttcagcgccg
     1921 cgagggtggg ctcgtagggc cccatgtcga agaaggcgaa ggcgaccaga gtctccgggt
     1981 gatcggcgaa gtaccttggc gcggtctcga cgacatcgcc ggcgatcagc tggtggccgc
     2041 cccggatgtg gccaaaggcg ttcatcccct cgtggacctg gagcagctca cccaggtagt
     2101 cgggatagct tccaccggtg ttgtagccgc tatgggtctc ggtggacttg gccgccatgc
     2161 cggcctcttc aggatagccc gcgaaggtgt cgaagccgat gatcgggcgc tgcttgttga
     2221 agggctcgtg gatcgccctc aggttctcca gcagcaccag attctggccc cgccaggtgc
     2281 cgaactcgat cagtgcgccg ggcaccgagg cgacgcgccg gtaggcgtcg tgcagcacca
     2341 ggaacttcac caggagcgag cttcggacgt agagcccgag attgaacatc agctcgtcgg
     2401 gcggcagggg cgagtcctgc atcatctggc gcaggcgctc gcggtgagcg aacccttcgg
     2461 cctgcgctgt cgtggcctcg atggggacct cgtcgctcat gcggcctcct ccagaacggc
     2521 gtaaccaaag ccggaacggc cgaaaccgtt gccgttgaag aacatgacga tccgaccgtc
     2581 gacctgggtc acgaagggat agcaggtcat ggtggacgcc cacggcgtct gaccgacgcc
     2641 aagaccacag gcgtcgtcca ttcgccgcca gtccaggccg tccgcggatt ccgcgtagcc
     2701 gatgcggtag gcgccggccc cgtcgcgata gtccgcggag tcccggaaac aataccacat
     2761 ccggtagcga tcgccgtcgc ggatgacggt gggatgggag aaggcctcgc ggtcatgggt
     2821 cggcgggatg cagaggtggt tcggccggtc ccagctgacc ccatcgcgcg aggaggcgta
     2881 tttgatcaca tagacgggct cgaacttgcc ctcgacctcg acccagcgga cgccggagat
     2941 gtaccacatc cgccagagct ccccctcctt caacagggtc ggggtcacgg cgatgtaggg
     3001 ctcgagtgga ttgcgttcca gaacggggcc ttcgtagagc cgccggaagt tatcgccgtc
     3061 gtcgtcgctg accgcgatgc cgacggagtt gcggtagggc acggtcacgc cacggttcca
     3121 gccgctgtag tagagcagca cgcggccgtt ctcgcgaacc gggaagctcg gcatggcgcc
     3181 gtcgtcgtcg aacgtgcccg gcgccccgaa tcccaggatc gggtccttgt ggaaataggt
     3241 gacccggctc aggtcggccc ggtcgaggtc cagataggtg gtgtagctgc ggccgtcggc
     3301 gaaccggtcg gcatagaaga cgcgcacctt gtcctcgtag accagcgccg tgggcacctg
     3361 ggcgtgagtg ccggcccagt cgtgttcgga ggggtcgaat atccgcccca tgatgcgcca
     3421 gcccatcgcc gccgcctcag atcgaccgga gccggtcgct ggtgaccctg gcggcctccg
     3481 tcgcggcgcc gacgaagacg gcgttgtcat ccgacgattt caggatcagg gcggcggcgc
     3541 cgatgacgtt gcgcgccccg atgttgatat tgtcgcgcag agtggcgttc accccgatga
     3601 aggtccccgc gccgatctcg caattgcccg agatcaccgc ctgggaggcg atgaagcagt
     3661 tgtcgccgat ccgcgtgtgg tgcccgatgt ggttgcccga ccacatgatc acattgcgcc
     3721 cgatggtcac gaacggctgg atgacgttgt tttccatgat gatggtgttg ggattcacca
     3781 ccagcttgga ccagacgctg gcgcgcgggc tcacgtggct ggtcagggca tagcccttgg
     3841 cttcggcctc ggcgaccttc gcctcgcgaa gtttgttcac gcccttgaag ctgatggcca
     3901 cgaacatttc gtgggtgtcg ggtgggaagc gctgctccac gtcctcgaag tcgacaaccg
     3961 gcacgccgaa cacgtcctca gcggtgcggt aggcggcatc gacggtgaag gcgacgacgt
     4021 tccggccgcc ttcttcggtg agatagtggt ggatcacctc cgcgacctga ccgattccga
     4081 agatgatgac gtcccgcatc tggcgcacct aaagacaact gggcgcagtc tcggttttcg
     4141 cggctacgat atggttaacg ttcgaccatt tgagcgttgt tcagcgcgcg atcgagggcg
     4201 gcggcgaccc gggcgatctc gtcggcgtcc atgtcgatgg agaagggcag accaagggtc
     4261 gagcaggcga ggtggtcggt gaaccccaag ggctcgcggc ggcattcccg gaaggccgtg
     4321 ctcgtatggc agccgtcgcc ccaccactgg cgggtgtcga caccgacctc gcgcaggaac
     4381 gccgccacgg ccgccgctga gccccgcggc aggccgacgg tgcagacgct ggtcacccaa
     4441 tcggagcccc agccgtcctg gaatctcacc tcgggccgcc cgatcagggc gatccgcagg
     4501 tgctgcgccg tgcgcatcca gcgcaagcgg tcgcccggcc agttgtcgag cgccgcttgg
     4561 ccgacggccg cggcatattc ggagagcttg gcgttggtcg ccgcgatctg ggagtcgcgg
     4621 ctgccgtaga agccgaaggt ggtcgccaag cgcacccgat gggccagggc cgcgtcctcg
     4681 gtggccagat agccgccttc gcccaggccc agcaccttgg tggcgtgcag gctgacgacg
     4741 gcgggcaggc gggcgtcatg aagggtgtcg aaggccgccg cggcgtcgat cagcaccggc
     4801 acgccggtcg tctcgcggaa cgccagccag gcgtcgatgt ccggcatggc cccgaaggcg
     4861 cagaccggga tcacggccac cacctggcgg ctcaggtccg gcgagagggc cgcgacccgc
     4921 gccggatcga gcatccaggt ggcggggtcg acgtccacga accagggctt cagcccggcc
     4981 tggaccacgg cgtgggcggt ggcgacgaag gtccaggccg gcagcaccac atggccgccg
     5041 ggcgccaggt ccatggcctg cagcgccagg gtcagcgcct gggtggcgtt ggtgacggtg
     5101 atcacctggg tgggcgccgc gaaccggtcg gcgagccgct gctcgaggcc ggtcagcagc
     5161 gggccgaagt tggaatacca gcgcgcctca tcgatctgct gcaggtacgg caggatcgcc
     5221 tcagcgttcg gcaggcgcgg gcgggcgacc ggaaccgtcg cgggcgcgac ctgccgctgc
     5281 gcgtgcgata gtgcgcgggt ctgcgccaag ccctgatcct ccggaaaatc ccagccggca
     5341 gggcaacacg tttgcggtta acggcggatt aggacccggg gactgcgctc aagtggcgcg
     5401 cgcggcgatc agcttcaaaa acgcttcggc gacccgggga ccgccctggc cgtcgcagag
     5461 ctcggcgctc gccgtggcca gctggcggcg gagattggcg tcggtggcga tgcgcatcag
     5521 cgcccggtcg aacagcgcct cgaagtcggc ggcgccggcg tccaccacca gagccgcttc
     5581 gcgctcggcc agggtctggg ctgcggcgcg ctggctctcg gccagcacca gcatcagggt
     5641 gggcaggccc agcgtgcagc gctcccaggt cgaggagccg gcggcgccga tggcgaaatc
     5701 cgcctcggcg gtgagctggg ccatctgcag gctgtcgatg tgcagcgcga tgcgggtgtc
     5761 gcgccgggcg atcttggtca ggctggccag gctcggagcc tccgcgccca gcacgatgtc
     5821 gatccccacg tcgctgacct tcggccgcag ccgttcgacc acccggccgg tgatcccatc
     5881 cacgtcggtc aggccgagcg agaccagcac ccggcccacc ggttcgccgc gccaggcgag
     5941 cgcggtgtcg cgcagggccg cgaactcagg ccgcaccggg gcgtattgcg ggccgagcag
     6001 caggcgcgcg ccctcgggga tcaggccgtc atagtcctcg gcgcgccggg ccgggccgga
     6061 gtccagcacc agatcggccg ccagaacccg gtcggccagg tcgtcgatgg cgagcgcggg
     6121 cttgccctgg gccatggccc ggtgatcgcc ctcggagagg ccatagtggt cgaagacgat
     6181 ggcgtcgaag gcgtgcggct tgaccgcggc ggcaaggtcg ccgggcgcgt tcgaggcccc
     6241 cgcgagccgc tcggcttccg gcgcgaaggc cgcgaagatc gcctccgccg ccggcgggat
     6301 cacgaagcgg caggtcgccc cctgcgcctc cagggcgccg gcgagggtca gggagcgcat
     6361 gacgtggccg ccgcccaccg cggggcccgc gtcgacgaca atgaggatgc ttgggccgct
     6421 catgaccgca gctggcctcc ggacgaatca ggttcgacac cctaggccga aatgcaaagg
     6481 gccgctccga agagcggccc ccgcgaagtg aaaaggccgg cgcctcgcta tatga
//
LOCUS       DATAJL010000601        12957 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94633,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000601 DATAJL010000000
VERSION     DATAJL010000601.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 12957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12957
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94633"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /locus_tag="VHN39_11540"
     CDS             <1..402
                     /locus_tag="VHN39_11540"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817023.1"
                     /translation="VKVQNLKGNQLPEAPPNKFSANALYSWTFDPGKLTLSATYAWKD
                     ATYGSLFNRPYARAPSYDEVDLRATWADAKDRYKVIVFLNNAFDKTGYDNATGSLLLT
                     PANAPPIGQIAINQSLIAPRTYGIQFQYKFH"
     gene            578..2017
                     /locus_tag="VHN39_11545"
     CDS             578..2017
                     /locus_tag="VHN39_11545"
                     /inference="COORDINATES: protein motif:HMM:NF024860.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HEX2817024.1"
                     /translation="MDSAAFSRALDAAAAHFAAGQLDAAAQVYRRLERQAPQDIRPAY
                     SLAVIDIRQGRLDRARRRLEAVVAIEPGLAAAHHNLGAVRQRLGAWDAAAEAYGRALE
                     LQPQAPETRAGLAGVLAALGRGGEAIGHLRVLVADPSHPWPALIRIALIDPAAVGDDD
                     LARMQDAAADEAVDADSRIGLSFALGDMLEHRGRSAEAFAAYAAGNRLKHAALDSAAV
                     AEANAAAARYVRELVDARFVAARAGQGSRSDAPIFIVGMPRSGSTLIEQILARHPDVQ
                     GLGETGVLPTLVTHGYPRTGVGLRDLAARYLAAMRERGWDGTSRFVDKTLENYLHLGL
                     IQVLFPQAMILHAVRDPVDTSFACYRQLFSSGNETLYDLAEIGAEYVRYRQLMEHWAT
                     VLPGRAIDVSYEALVEDPDTQIPDLVAKAGLAWDPAALRFHERAGGVATASASQVRQP
                     IYQSSVQRWRRHAERLQPLVVALGKYAGI"
     gene            complement(2024..2100)
                     /locus_tag="VHN39_11550"
     tRNA            complement(2024..2100)
                     /locus_tag="VHN39_11550"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2064..2066),aa:Asp,seq:gtc)
     gene            2309..2686
                     /locus_tag="VHN39_11555"
     CDS             2309..2686
                     /locus_tag="VHN39_11555"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEX2817025.1"
                     /translation="MNAFLLQYLPIVIFLGIAAALGIIFILFAANIAPKAPDPEKLSS
                     YECGFNAFDDARMKFDVRFYLVSILFIIFDLEVAFLFPWAVALMKLPAAMGQFAFWSM
                     MSFLGVLTVGFIYEWKKGALEWE"
     gene            2656..3270
                     /locus_tag="VHN39_11560"
     CDS             2656..3270
                     /locus_tag="VHN39_11560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HEX2817026.1"
                     /translation="MEEGSPGMGVIVPAGPGGQAPLLPAGGAGRSTVEGYNPKAHDPF
                     FDGVSQQLADKGFITAGVDDLITWARTGSLMWMTFGLACCAIEMMHASMPRYDLERYG
                     FAPRGSPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYFSYS
                     TVRGCDRIVPVDVYVPGCPPTAEALVYGVLQLQKKIRRTGTIMR"
     gene            3267..3914
                     /locus_tag="VHN39_11565"
     CDS             3267..3914
                     /locus_tag="VHN39_11565"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEX2817027.1"
                     /translation="MSWPQPLPMLEKLGQQIVAKSKGAVTGYEVMYGELNLVGPASRI
                     VEALTYLRDNKDCQFHQLIDVCGADYPERPLRFDVVYHLLSMTKNQRVRLNVQTDEDT
                     AVPSVTSVFPCADWYERETFDMYGVFFSGHPDLRRILTDYGFHGHPLRKDFPMTGYVE
                     VRYDDELKRVVYEPVKSVEWRNWDFLSPWEGAEPGYAPLIPGDEKAIPAAKEPGK"
     gene            3911..5149
                     /locus_tag="VHN39_11570"
     CDS             3911..5149
                     /locus_tag="VHN39_11570"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEX2817028.1"
                     /translation="MTGANAPAKPTEFFAPEVQGETKVRKFNINFGPQHPAAHGVLRM
                     VLELDGEVVERVDPHIGLLHRGTEKLMEARPYAQSIPYFDRLDYVCPMNQEHAYVLAL
                     ERLMGVEVPIRGQLIRVLYCEIGRILNHLMNITTQAMDVGALTPPLWGFEQREKLMVF
                     YERASGARMHANYFRVGGVRQDLPPELVLDIADWCKNVPRVFDDIEKLITGNRIFKQR
                     NVDIGKVTKDEALAWGFSGVMVRGSGIAWDLRRSQPYECYSELEFDVPLGVNGDCYDR
                     YLCRMEEMRQSVKIMAQCCERLMKTPGPSISEDNKVAPPKRGEMKRSMEALIHHFKLF
                     TEGYRTPPGEVYAAVEAPKGEFGVYLVSDGTNRPYRCKIRAPSYPFLQAMDWISRGHM
                     LADVSAILGSLDIVFGEIDR"
     gene            5146..5823
                     /gene="nuoE"
                     /locus_tag="VHN39_11575"
     CDS             5146..5823
                     /gene="nuoE"
                     /locus_tag="VHN39_11575"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HEX2817029.1"
                     /translation="MSVRRLAQVQPASFAFKPATLKAARTWMENFPAGRQQSAVIAIL
                     WLVQKQEGWVSEPAIRAVAELLGMPVIRVLEIATFYTMFMLEPVGTVALVQVCGTTPC
                     QTRGSEDLLAVCRRRFGPSNHRSADGQFYWQEVECMGACANAPMAAINDYYYEDLTAQ
                     SFEKLLDDFAAGKTPKPGSAIGRQGSAPEGGPIALTDPTLYDGSLAKKITIPNLPAKP
                     SRSKAPA"
     gene            5820..6032
                     /locus_tag="VHN39_11580"
     CDS             5820..6032
                     /locus_tag="VHN39_11580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817030.1"
                     /translation="MTIDPAQMRQRYVKMMLASTGLMFVAVGFAIAHFIYGVGWALWG
                     FIGFIALGFGAQLWFVRGIARMNKGG"
     gene            6036..7352
                     /gene="nuoF"
                     /locus_tag="VHN39_11585"
     CDS             6036..7352
                     /gene="nuoF"
                     /locus_tag="VHN39_11585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HEX2817031.1"
                     /translation="MPGILADKDRIFLNIYGVHDWKLEGARSRGCWNGTKDIVAQTPE
                     WICDQMKASGLRGRGGAGFATGLKWTFMPKQESERPHYLLVNADESEPGACKDRDILR
                     NDPHLLIEGCLIACKAMRAHTAYIYIRGEYVFERERLTAAIKQAYDARLIGPGNVHGW
                     DCDVRVTHGGGAYICGDETALMESFEGKKGQPRLKPPFPAGAGIYGCPTTVNNVETIA
                     VVGTIFRRGAEWFAGFGTEKSTGTKLFAGSGHLNKPCVVEEAVGISVKQLIEDHFGGV
                     RGGWGNLKAVIPGGISVRMIPADQCDEAIMTYEDLQARGSGLGTGTMIVFDKDADLVR
                     AIARAAYFYKHESCGQCTPCREGTGWMWRVMERMVTGEAEMAEIDMLLDVASQVEGHT
                     ICGLGDAAAWPIQGLFRHFRHEVEERITLYRAGKPHVQGHSLQAAE"
     gene            7357..9402
                     /gene="nuoG"
                     /locus_tag="VHN39_11590"
     CDS             7357..9402
                     /gene="nuoG"
                     /locus_tag="VHN39_11590"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_process: GO:0006120 - mitochondrial electron transport,
                     NADH to ubiquinone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HEX2817032.1"
                     /translation="MPICKVDGVEVEFEPGMNVLQVAELAGKEIPRFCYHERLSIAGN
                     CRMCLVEVKPGPPKPQASCALPAAENMEIFTDTPMVKKARHGVMEFLLINHPLDCPIC
                     DQGGECDLQDQAMGYGRDDSRYADNKRAVEEKYMGPLIKTVMTRCIQCTRCVRFITEV
                     AGVPEIGLISRGEDVEITTYLDRAVTSELSANIIDLCPVGALTSKPYAFNARPWELKK
                     TESVDVMDALGSAIRVDARGSAVLRVLPRVNEDINEEWISDKTRYAVDGLARQRLDRP
                     YIREGGKLRGATWSEALDAVAAKLKATAPDRIGVIAGELQDAESMKAALDLFRGLGVQ
                     STDCREDGMALGGGARQSWLFNSTLSGIEDADVVLLVGVNPRLEAPVLNARLRKRWLA
                     GALKVGVIGEQADLTYSYDYLGSGPKALGGLAKLKSDFVTALKGAKAPAIVVGAGALS
                     RADGAAVLKAAAGVGKAFGMTWNVLHSAASRVGGLDLGFTPGEGGKTAGELAAKGGAD
                     VLFLLGADEIDTTASKAFKVYLGTHGDRGAHLADVILPGAAYTEKNGFYVNTEGRVQQ
                     GVRAVFPKGEAKEDWAILRALSERLGTKLPYDSLDQLRAKLFADHPSFGRIDHVDGPE
                     AAAGLDLGSLGGKGEVSDAPFVSAVTDFYLTNAIARASVTMAECAAQASGAAKMAAE"
     gene            9403..10473
                     /gene="nuoH"
                     /locus_tag="VHN39_11595"
     CDS             9403..10473
                     /gene="nuoH"
                     /locus_tag="VHN39_11595"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003170182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEX2817033.1"
                     /translation="MDFWTTPIGWTLLTVGQILLVTVILLLTVAFLIYGDRKIFAGVQ
                     MRKGPNVVGPFVLLQSFADLGKFLIKELVVPAGADKVVFLLAPLISVTLALGSWAAMP
                     LAPGWVISNINVGILYLFAVSSMGVYGIIMGGWASNSKYPFLGALRSAAQMVSYEVSI
                     GFVIITVILLSGTMNLTKIVELQAGGFWHWNILGGAGLQNLPLALVMIPMGVIFFISG
                     LAETNRPPFDLPEAESELVAGYAIEYGSTPYMLFYLAETSNIILMSGLMAVLFLGGWQ
                     APFPTPFTAHWAPTLVSLFGLFWLAAKTFVVFFMNAMVRSVVPRYRYDQLMRLGWKVF
                     LPTSLVAVALVAGWRVYAPVMG"
     gene            10470..10670
                     /locus_tag="VHN39_11600"
     CDS             10470..10670
                     /locus_tag="VHN39_11600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817034.1"
                     /translation="MRAAVLIIAATLGLSACETTGNNVSGTADYDSLKRATEDCKATG
                     GKLVLKDGGDAQYIQDYACKKE"
     gene            10673..11164
                     /gene="nuoI"
                     /locus_tag="VHN39_11605"
     CDS             10673..11164
                     /gene="nuoI"
                     /locus_tag="VHN39_11605"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEX2817035.1"
                     /translation="MFQRIGQAIKGAALMDFAGALGLGLKYMVRPKATVIYPNERNPQ
                     SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIEAEPREDGSRRTTRYDIDMVK
                     CIYCGLCQEACPVDAIVEGPNLEFAVETREELYYDKAKLLDNGDRWEREIAKNLELDA
                     PYR"
     gene            11227..11856
                     /locus_tag="VHN39_11610"
     CDS             11227..11856
                     /locus_tag="VHN39_11610"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517392.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEX2817036.1"
                     /translation="MALQAIAFYLMAATTIASGIAVVSARNPVHSVLFLIAAFFSAAG
                     LFVLLGAEFLAMLLVVVYVGAVAVLFLFVVMMLDVDFTQLRQGFARYMPLGGLIAGGL
                     AIEMIVVSTTVATNGAARLNDTPMAQGKGAIASMSNAEAIGRVLYTNYVYFFQAAGMV
                     LLVAMIGAIVLTLRHKPGVKRQIIMDQVLRTPATGMRMVSPKPGEGIDA"
     gene            11856..12161
                     /gene="nuoK"
                     /locus_tag="VHN39_11615"
     CDS             11856..12161
                     /gene="nuoK"
                     /locus_tag="VHN39_11615"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEX2817037.1"
                     /translation="MIGLAHYLAVAAILFTIGVFGIFVNRKNIIVILMSVELILLAVN
                     INLVAFSAYLHDVTGQIFAMIVLTVAAAEAAVGLAILVTFFRNRGDIAVDDASMMKG"
     gene            12164..>12957
                     /locus_tag="VHN39_11620"
     CDS             12164..>12957
                     /locus_tag="VHN39_11620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proton-conducting transporter membrane subunit"
                     /protein_id="HEX2817038.1"
                     /translation="MDAKLLVTIILYGPLLGAAVAGLFGRRIGNTASMAITTGFLMLS
                     AVLSWVVFSQWTWGGLAPFTNTYAPFIQVGNFVSNWSFRLDGLSAVMLVVVTTVSSLV
                     HLYSWGYMAEDDSKPRFFAYLSLFTFAMLSLISAADFMQLFFGWEGVGLASYLLIGFW
                     HHKPTANAAAIKAFVVNRVGDFGFALGIMGVFMLYDAVGFDTVFAATPEKADTYFEFL
                     GYNVHALTTLCILLFIGAMGKSAQIGLHTWLPDAMEGPTPVSALIHA"
BASE COUNT         2146 a         4378 c         4215 g         2218 t
ORIGIN      
        1 gtcaaggtgc agaacctgaa gggcaaccag ctgccggagg cgccgccgaa caagttctcg
       61 gccaatgcgc tctacagctg gactttcgat cccgggaaac tgaccctgtc ggcgacctac
      121 gcctggaagg acgccaccta cggcagtctc ttcaaccggc cctatgcccg cgccccgtcc
      181 tatgacgagg tggatctgcg ggcgacctgg gcggacgcca aggatcgcta caaggtgatc
      241 gtcttcctga acaacgcctt cgacaagacg ggctacgaca acgcgaccgg ctcactgctt
      301 ctgacgccgg ccaacgcgcc accgatcggg cagatcgcga tcaaccagag cctgatcgcg
      361 cccaggacct acggcatcca gttccagtac aagttccact gacgacccga cctaataacc
      421 cgggggccgc gctctctcag gagtgcggcc cccaactact ggcggggtcg ggagccggtc
      481 ggtaccatgg ccggatgatc ccctggcccg tcagctcatg acatcctccc tatggccggg
      541 tgcgcgccgt gggcggcagt ctgcgccgtc cccgcccgtg gattcggccg ctttttcgcg
      601 cgcgctcgat gcggcggccg cgcatttcgc cgccggccaa ctggacgcgg cggcccaagt
      661 ctaccgccgc ctggagcgcc aggcgccgca ggacattcgc ccagcctatt cccttgccgt
      721 gatcgacatc cgccagggcc gcctggaccg ggcccgccgg cggctggagg cggtcgtcgc
      781 gattgagccc ggcctcgccg ccgcccatca caacctgggc gccgtccgcc agcgcctggg
      841 cgcttgggat gcggcggccg aggcctatgg ccgggcgctg gagcttcagc cgcaagcgcc
      901 ggagacccgc gccgggctgg cgggcgtgct cgccgcgctg ggacggggcg gggaggccat
      961 cggccatctg cgagtgctgg tcgccgatcc gagccatccc tggccggccc tgatccgcat
     1021 cgccctcatc gacccggcgg ccgtcggcga cgacgacctt gcccggatgc aggacgccgc
     1081 ggcagatgag gcggtcgacg ccgacagccg catcggtctc agcttcgccc tgggggacat
     1141 gctcgagcac cgtggccgca gcgcggaggc gttcgccgcc tatgccgccg gcaaccggct
     1201 caagcacgcg gccctggaca gcgccgccgt ggccgaggcg aacgccgcgg ccgcccgcta
     1261 tgtccgcgaa cttgtcgacg ccaggttcgt cgccgcccgt gccggccagg gcagccgatc
     1321 ggacgcgccg atcttcatcg tcggcatgcc gcgctccggc tcgaccctga tcgaacagat
     1381 cctcgccagg cacccggacg tccaggggct cggcgagacc ggcgtgctgc cgaccctcgt
     1441 cacccacggc tatccgagga cgggcgtcgg cctgcgcgac ctcgccgccc gctatctcgc
     1501 cgccatgcgc gagcgcggct gggacgggac gtcccgcttc gtggacaaga cgctggagaa
     1561 ctacctccac ctgggcctga tccaggtcct cttcccgcag gcgatgatcc tgcacgccgt
     1621 tcgggacccg gtggacacga gcttcgcctg ctaccgtcag ctgttctcca gcggcaacga
     1681 gaccctctac gacctggccg agatcggcgc ggagtacgtc cgctatcgcc agctcatgga
     1741 gcattgggcc accgtcctgc cgggccgcgc catcgacgtg agctacgagg ccctggtcga
     1801 agatccggac acccagatcc ccgacctggt cgccaaggcc ggcctggcct gggacccggc
     1861 agccttgcgc ttccacgagc gggcaggggg cgtcgcgaca gccagcgcct cacaggtccg
     1921 ccagcccatc taccagagct ccgtccagcg ctggcgtcgc cacgccgagc gcctgcagcc
     1981 gctggtcgtg gcgctgggga aatatgcagg gatttgaggc aagtggcgcg aatgacggga
     2041 cttgaacccg cgacctccgg cgtgacaggc cggcgctcta accaactgag ctacatccgc
     2101 aaactttgcg ccgcgtgaaa cgcgaggcgc gtctgatagg tctaggccgg aatcgtgtca
     2161 acggaagatg cggacgcaaa gcgtcacagg cgcccgtttt ctgtgagctt tcggctcgca
     2221 tttcgtgagc tttccgcgcc gcaacacgac cccgtttgaa accgcaggac gtgtggtcta
     2281 gaacggcccg cgactccccg aggactctat gaacgcgttc ctgctccagt acctgcccat
     2341 cgtgatcttc ctaggcatcg ccgcggcgct gggcatcatc ttcatcctgt tcgccgcgaa
     2401 catcgctccc aaggcgccgg accccgaaaa gctctcgtcc tacgagtgcg ggttcaacgc
     2461 cttcgacgac gcgcggatga agttcgacgt gcgattctac ctggtctcga tcctgttcat
     2521 catctttgac ctggaagtgg ccttcctgtt cccctgggcg gtggcgctga tgaagctgcc
     2581 ggccgcgatg ggccagttcg cattctggtc gatgatgagc ttcctgggcg tgctcaccgt
     2641 gggcttcatc tacgagtgga agaagggagc cctggaatgg gagtgatcgt tcccgcgggc
     2701 ccggggggcc aagcccccct cttgccggca ggtggggccg gtcgcagcac cgttgagggc
     2761 tacaacccca aggcccacga cccgttcttc gacggcgtct cgcagcagct cgccgacaag
     2821 ggcttcatca ccgccggcgt cgatgacctg atcacctggg cgcgcaccgg ctcgctgatg
     2881 tggatgacct tcggcctggc ctgctgcgcg atcgagatga tgcacgcctc catgccgcgc
     2941 tacgacctgg agcgctacgg cttcgccccg cgcggcagtc cacgccagtc cgatgtgatg
     3001 atcgtcgccg gcacgctggt gaacaagatg gctccggcgc tccgcaaggt ctacgaccag
     3061 atgcccgagc cgcgctacgt gatctccatg ggctcctgcg ccaacggcgg cggctactac
     3121 tatttcagct attcgaccgt gcgcggctgc gaccggatcg tgccggtgga cgtctatgtg
     3181 cccggctgcc cgcccaccgc cgaggccctg gtctacggcg tgctgcaact gcagaagaag
     3241 atccgccgca ccgggaccat catgcgatga gctggccgca gccgcttccg atgctggaaa
     3301 agctcggcca gcagatcgtc gccaagtcca agggcgcggt caccggctac gaggtcatgt
     3361 acggcgaatt gaatctcgta ggacccgcga gccgaatcgt cgaggcgctg acctatctgc
     3421 gcgacaacaa ggactgccag ttccaccagc tgatcgacgt ctgcggcgcc gactatccgg
     3481 agcggccgct gcgcttcgac gtggtctacc acctgctctc catgaccaag aaccagcggg
     3541 tgaggctcaa cgtccagacc gacgaggaca ccgccgtccc gtccgtcacc agcgtctttc
     3601 cctgcgccga ctggtacgag cgggagacct tcgacatgta cggggtgttc ttctccggcc
     3661 acccggacct gcgccgcatc ctcaccgact acggcttcca cggccatccg ctgcggaagg
     3721 acttcccgat gaccggctat gtcgaggtcc gctacgacga cgagctgaag cgggtggtct
     3781 atgagccggt gaaatcggtg gaatggcgca actgggactt cctctcgccc tgggaaggcg
     3841 ccgagcccgg ctatgccccg ctgatcccgg gggatgagaa ggcgatcccc gccgccaagg
     3901 agccgggcaa atgaccggcg ccaacgctcc cgcgaaaccc accgaattct tcgcccctga
     3961 ggttcagggc gagaccaagg tgcgtaagtt caacatcaac ttcggcccgc agcatccggc
     4021 cgcgcacggc gtgctgcgca tggtgctgga gctggacggc gaggtggtcg aacgcgtcga
     4081 tccgcacatc ggcctcttac atcgcggcac cgagaagctg atggaagcgc ggccctacgc
     4141 ccagtcgatc ccctatttcg accgcctcga ctacgtctgc ccgatgaacc aggagcacgc
     4201 ctatgtgctc gcgctggagc ggctgatggg cgtcgaggtg ccgatccgcg gtcaactgat
     4261 ccgtgtgctc tactgcgaga tcggccgcat cctgaaccac ctcatgaaca tcaccaccca
     4321 ggccatggac gtgggcgcct tgaccccgcc gctctggggc ttcgaacagc gcgaaaagct
     4381 gatggtgttc tatgagcggg cttcgggcgc gcgcatgcac gccaactact tccgcgtggg
     4441 tggggtgcgc caggacctgc cgccggagct ggtcctcgac atcgccgact ggtgcaagaa
     4501 cgtcccgagg gttttcgacg acatcgaaaa gctgatcact ggcaaccgca tcttcaaaca
     4561 gcgcaacgtc gacatcggta aggtcaccaa ggacgaggcc ctggcctggg gcttctcggg
     4621 cgtcatggtg cgcgggtcgg gcatcgcctg ggacctgcgc cgcagccaac cctacgagtg
     4681 ctactcggag ctggaattcg acgtgccgct gggtgtcaac ggcgactgct acgaccgcta
     4741 cctctgccgc atggaagaga tgcgccagtc ggtgaagatc atggcccagt gctgcgagcg
     4801 cctgatgaag acgccgggcc cctcgatctc tgaggacaac aaggtcgcgc cgcccaaacg
     4861 gggcgagatg aagcgctcga tggaggcgct gatccatcac ttcaagctgt tcaccgaggg
     4921 ctatcgcacc ccgcccggcg aggtctacgc cgccgtcgag gcgcccaagg gtgagttcgg
     4981 cgtctatctg gtctcggacg gaaccaaccg cccgtaccgc tgcaagatcc gcgcgccgag
     5041 ctatcccttc ctgcaggcga tggactggat cagccgcggc cacatgctgg ccgacgtctc
     5101 cgccatcctg ggatcactgg atatcgtgtt cggggagatc gaccgttgag cgttcggcgc
     5161 ctcgcccagg ttcagccggc cagtttcgcc ttcaagccgg cgaccttgaa ggccgcccgc
     5221 acttggatgg agaacttccc cgccgggcgg cagcagtcgg cggtgatcgc catcctgtgg
     5281 ctggtgcaga agcaggaggg ctgggtctcg gaaccggcca tccgcgcggt cgccgagttg
     5341 ctcggcatgc cggtgatccg ggtgctggag atcgcgacct tctatacgat gttcatgctg
     5401 gagccggtgg gcacggtggc cctggtccaa gtctgcggca ccacaccctg ccagacgcgc
     5461 gggtcggaag acctgctggc ggtttgccgc cgccggttcg gcccgtccaa ccaccgctcg
     5521 gccgatggcc agttctactg gcaggaagtc gagtgcatgg gcgcctgcgc caacgccccg
     5581 atggccgcca tcaacgacta ttactacgag gacctgacgg cccagagctt cgaaaagttg
     5641 ctggacgact tcgccgccgg caagacgccc aagccgggct ccgccatcgg tcgccagggc
     5701 tcggcgccgg agggcgggcc gatcgcgctt accgatccga cgctctacga cggctccctg
     5761 gccaagaaga tcaccatccc gaacctgccg gccaaaccct ccaggtcgaa ggcgccggca
     5821 tgaccataga tccggcacag atgcggcagc ggtacgtgaa gatgatgctg gcctcgacag
     5881 gcctgatgtt cgtcgccgtc ggcttcgcta tcgcccattt catctacggc gtcggctggg
     5941 ctctatgggg cttcatcggc ttcatcgctc tgggcttcgg cgcccagctt tggttcgttc
     6001 gcggcattgc ccgcatgaat aaggggggct gaggcttgcc tggcatcctg gccgacaagg
     6061 atcggatctt cctgaacatc tacggcgtcc atgactggaa gctggagggc gccaggtcgc
     6121 gcgggtgctg gaacgggacg aaggacatcg tcgcccagac gccggaatgg atctgcgatc
     6181 agatgaaggc ctcgggcctg cgcggccgcg gcggcgcggg cttcgccacg ggcctgaagt
     6241 ggaccttcat gcccaagcag gagagcgagc ggccgcacta tcttctggtc aatgccgacg
     6301 aaagcgagcc gggggcctgc aaggaccgcg acatcctcag gaacgacccg cacctgctga
     6361 tcgagggctg cctgatcgcc tgcaaggcga tgcgcgccca caccgcctac atctacatcc
     6421 gcggcgaata tgtcttcgag cgcgagcgcc tgaccgccgc gatcaagcag gcctatgacg
     6481 ccaggctgat cggccccggc aacgtccacg gctgggactg cgacgtgcgc gtcacccacg
     6541 gcggcggcgc ctacatctgc ggcgacgaaa ccgcgctgat ggagagcttc gagggcaaga
     6601 aaggccagcc gcgcctgaag cccccgttcc cggccggcgc cggcatctac ggttgtccca
     6661 ccaccgtcaa caacgtcgag accatcgccg tggtcggcac gatctttcgc cggggcgcgg
     6721 aatggttcgc tgggttcggg accgagaaat ccaccggcac gaagctgttc gcgggctccg
     6781 gccacctcaa taagccctgt gtcgtcgagg aagccgtcgg aatctccgtg aagcagttga
     6841 tcgaggacca cttcggcggc gtgcgcggcg gctggggcaa cctgaaggcg gtgatcccgg
     6901 gcggcatctc ggtgcggatg attccggccg accagtgcga cgaagccatc atgacctacg
     6961 aggacctgca ggcgcggggt tccggcctcg gcaccggcac catgatcgtc ttcgacaagg
     7021 acgccgacct tgtccgcgcc atcgcgcgcg cggcctattt ctacaagcac gagagctgcg
     7081 gccagtgcac gccctgccgc gaaggcaccg gctggatgtg gcgggtgatg gagcggatgg
     7141 tcaccggcga ggccgagatg gccgagatcg acatgctgct cgacgtcgcc agccaggtag
     7201 agggccacac catctgcggc ctgggcgatg cggccgcctg gccgatccag ggactgttcc
     7261 gccacttccg ccacgaggtc gaggaacgca tcaccctcta ccgtgccggc aaaccccacg
     7321 tgcagggcca ctccctgcag gcggcggagt aagcccatgc cgatttgcaa ggtcgacggc
     7381 gtcgaggtcg agttcgagcc gggcatgaat gtcctgcagg tggccgagct cgccgggaag
     7441 gaaatcccgc ggttctgcta ccacgagcgc ctgtcgatcg ccggcaactg ccgcatgtgc
     7501 ctggtggagg tgaagcccgg tccgccgaag ccgcaggcct cctgcgccct gccagccgcc
     7561 gagaacatgg agatcttcac cgacacgccg atggtcaaga aggcccggca tggggtgatg
     7621 gagttcctgc tgatcaacca cccgctggat tgcccgatct gcgaccaggg cggggagtgc
     7681 gacctgcagg accaggccat gggttacggc cgcgacgaca gccgctacgc cgacaacaag
     7741 cgcgctgtcg aagagaaata tatggggccg ttgatcaaga cggtcatgac ccgctgcatc
     7801 cagtgcaccc gctgcgtccg gttcatcacc gaggtggccg gggtgccgga aatcggtctc
     7861 ataagtcgcg gcgaagacgt tgaaattacg acctatctcg atagagccgt gacctcggaa
     7921 ctgtcggcca acatcatcga cctgtgcccc gtgggcgcgc tgacgtcgaa gccctacgcc
     7981 ttcaacgccc ggccctggga gctgaagaag accgagagcg tcgacgtgat ggatgcgctc
     8041 ggctcggcga tccgggtgga tgcccggggc tcggccgtgc tgcgggtgct gccgcgcgtc
     8101 aacgaggaca tcaacgagga gtggatctcc gacaagaccc gctacgccgt cgacggtctg
     8161 gcccgccagc gtctggaccg gccctacatc cgcgagggcg gcaagctgcg cggcgcgacc
     8221 tggagcgagg cgctcgacgc cgtcgccgcc aagctgaagg ccaccgcgcc cgaccgcatc
     8281 ggcgtgatcg ccggcgagct gcaggacgcg gagtccatga aggcggcgct cgacctcttc
     8341 cgcggcctgg gcgtgcagtc cactgactgc cgcgaggacg gcatggcctt gggcggcggc
     8401 gcgcgccaga gctggctctt caactccacc ctctccggta tcgaagacgc cgacgtcgtc
     8461 ctgctggtgg gcgtcaatcc gcgcctggaa gccccggtgt tgaacgcgcg cctgcgcaag
     8521 cggtggctgg ccggggcgct gaaggtgggc gtcatcggcg aacaggccga cctgacctac
     8581 agctacgact atctgggctc cggccccaag gcgctcggcg ggctcgccaa gctgaagagc
     8641 gatttcgtca ccgcgctaaa gggcgccaag gcgccagcga tcgtggttgg ggcaggggcc
     8701 ctctcccgcg ccgacggcgc cgcggtgctg aaagcggcgg ccggtgtcgg caaggcgttc
     8761 ggcatgacct ggaacgtgct gcatagcgcg gcctcccggg tcggcggcct ggacctcggt
     8821 ttcacgcccg gcgagggcgg caagacggcg ggcgagctgg cggccaaggg cggagcggac
     8881 gtgctcttcc tgctgggcgc cgacgagatc gacacaacgg cctccaaggc tttcaaggtc
     8941 tacctgggca cgcatggcga ccgtggcgcg cacctggccg acgtgatcct gccgggcgcg
     9001 gcctataccg agaagaacgg cttctacgtg aacacagagg gccgggtgca gcagggcgtc
     9061 cgcgccgtgt tccccaaggg cgaggccaag gaggattggg cgatcctgcg cgcgctgtcc
     9121 gaacgcctgg gaaccaagct gccctacgac agcctggatc agctccgcgc caagctgttc
     9181 gccgaccacc cgagctttgg ccgcatcgac catgtggacg gtccggaagc ggcggctggc
     9241 ctcgacctcg ggtcgctggg cggcaagggc gaggtctccg acgccccgtt cgtcagcgcg
     9301 gtcaccgact tctatctgac caacgccatc gcgcgggcca gcgtgaccat ggccgaatgc
     9361 gccgcccagg cttcgggcgc cgcgaagatg gcggcggaat agatggattt ctggaccacc
     9421 cccatcggct ggaccctgct gaccgtcggc cagattctgc tggtcaccgt catactgctg
     9481 ctcaccgtgg ccttcctgat ctacggcgac cgcaagatct tcgccggcgt ccagatgcgc
     9541 aaaggcccca acgtggtggg ccccttcgtc ctgctgcagt ccttcgccga cctgggcaag
     9601 ttcctgatca aggagctggt ggtcccggcc ggcgccgaca aggtggtttt cttgctggcg
     9661 ccgctgatca gcgtgacgct ggcgctgggc tcctgggcgg ccatgccgct cgcgcccggc
     9721 tgggtgatct ccaacatcaa tgtggggatc ctctacctgt tcgccgtctc ctccatgggc
     9781 gtttacggca tcatcatggg cggctgggcg tcgaactcga agtatccgtt cctgggcgcc
     9841 ctgcgctccg cggcccagat ggtctcctac gaggtctcca tcggtttcgt gatcatcacg
     9901 gtgatcttgc tctccgggac gatgaatctg acgaagatcg tcgagctcca ggccggcggg
     9961 ttctggcact ggaacatctt gggcggggcg ggcctgcaga acctgccgct ggcgctcgtc
    10021 atgatcccca tgggggtgat tttcttcatc tcgggcctgg cggagaccaa ccgtccgccc
    10081 ttcgacctgc ccgaggcgga gagcgagctc gtggccggct acgccattga gtacggctcc
    10141 acgccctaca tgctgttcta cctggccgag acctcgaaca tcatcctgat gagcgggctg
    10201 atggcggtgc tgttcctggg tggctggcag gccccgttcc cgacgccgtt cacggctcac
    10261 tgggcgccga ccctggtcag cctgttcggc ctcttctggc tggcggccaa gacgttcgtc
    10321 gtcttcttca tgaacgccat ggtccgctcg gtcgtgccgc gttatcgcta cgaccagctg
    10381 atgcgcctgg gctggaaggt gttcctgccg acctctctgg tggccgtggc gctggtcgcc
    10441 ggctggcgcg tctacgctcc ggtgatggga tgagggccgc cgtgctgatc atcgccgcga
    10501 ccctgggtct cagcgcctgt gagaccacag gcaacaacgt ctcgggcacg gccgactacg
    10561 actcgctgaa acgcgccacc gaagactgca aggccaccgg gggaaagctt gtcctcaagg
    10621 acggcggtga cgcgcagtac atccaagact acgcctgcaa gaaggaatga gcatgttcca
    10681 gcgtatcgga caggcgatca aaggcgcggc gttgatggat ttcgccggcg cgctcggcct
    10741 ggggctgaag tacatggtcc ggcccaaggc gactgtgatt tatcccaacg agcgcaaccc
    10801 gcagagcccg cggttccggg gcgagcatgc gctgcgccgc tatcccaacg gcgaggagcg
    10861 ctgcatcgcc tgcaagctct gcgaggccat ctgtccggcc caggccatca ccatcgaggc
    10921 cgagccccgc gaagacggca gcaggcgtac gacccgctac gacatcgaca tggtcaaatg
    10981 catctactgc ggcctgtgcc aggaggcctg cccggtggac gccatcgtgg aaggtcccaa
    11041 cctggagttc gccgtcgaga cccgcgaaga actctattac gacaaggcca aactgctcga
    11101 taacggcgac cgctgggaac gcgagatcgc gaagaatctg gaactggatg cgccctatcg
    11161 ctaagacccg cccgggcctt ttcgatacgc gaatcccctg agagtttgag gagctagacc
    11221 ccgccgatgg ccctgcaggc gatcgctttc tatctgatgg cggcgacgac catcgcaagt
    11281 gggatcgccg tggtctccgc gcgcaatccg gtgcactctg tgctgttcct gatcgcggcc
    11341 tttttctccg cagcggggct cttcgtgctc ctgggcgcgg agttcctggc gatgctgctg
    11401 gtggttgtct acgtgggcgc ggtcgcggtg ctgttcctgt tcgtggtcat gatgctggac
    11461 gtggacttca cccagcttcg gcagggcttc gcgcgctaca tgcccctggg tggtctgatc
    11521 gcaggcggcc tggccatcga gatgatcgtg gtctccacca ccgtcgccac caacggcgcg
    11581 gcccggctca acgacacccc gatggcgcag ggcaagggcg cgatcgcgtc catgagcaac
    11641 gctgaggcga tcgggcgcgt gctctatacg aactacgtct actttttcca ggcggccggc
    11701 atggtgctcc tggtggcgat gatcggggcc atcgtgctga cgctgcgcca caagcccggc
    11761 gtgaagcgcc agatcatcat ggaccaggtg ctgcgcacgc ccgccaccgg catgcgcatg
    11821 gtctcgccca agcccggcga agggatcgac gcatgataat cggtctcgcc cattatctcg
    11881 cggtcgccgc gatcctcttc accatcgggg tcttcggcat tttcgtgaac cgcaagaaca
    11941 tcatcgtcat cctgatgtcg gtggagctga tcctgctcgc cgtgaacatc aacctggtgg
    12001 ccttctcggc ctacctgcac gacgtcaccg gccagatttt tgcgatgatc gttctcacgg
    12061 tcgctgccgc cgaagccgcc gtcgggctgg cgatcctggt caccttcttc cgcaaccgcg
    12121 gcgacatcgc cgtggacgac gcctcgatga tgaagggctg agcatggacg ccaagctcct
    12181 cgtcacgatc attctctacg gaccgctgct gggcgcggcc gtggccgggc tgttcggccg
    12241 ccggatcggc aataccgcct cgatggcgat caccaccggc ttcctgatgc tctcggcggt
    12301 gctgtcgtgg gtggtgttca gccagtggac ctggggcggg ctcgccccct tcaccaacac
    12361 ctatgcgccc ttcattcagg ttgggaattt cgtctccaac tggtcgtttc ggctcgatgg
    12421 cctgtcggcg gtgatgctgg tggtagtgac caccgtctcg tcgctcgtgc acctctacag
    12481 ctggggatac atggccgagg acgatagcaa gccgcggttc ttcgcctacc tgtcgctctt
    12541 caccttcgcc atgctgtcgc tgatcagcgc ggcggacttc atgcagcttt tcttcggctg
    12601 ggaaggcgtc ggcctggcga gctatctgct gatcggcttc tggcaccaca aacccacggc
    12661 caacgccgcg gcgatcaagg ccttcgtggt caaccgggtc ggcgatttcg gtttcgcgct
    12721 cggcatcatg ggcgtgttca tgctctatga tgcggtcggc ttcgacacgg tgttcgccgc
    12781 gacgcccgag aaggccgaca cctatttcga attcctcggc tacaacgtcc acgcgctgac
    12841 cacgctgtgc atcctgctgt tcatcggcgc gatgggaaaa tcggcgcaga tcggcctcca
    12901 tacctggctg cccgatgcca tggaggggcc gaccccggtg tcggcgctga tccacgc
//
LOCUS       DATAJL010000602         1994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36418,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000602 DATAJL010000000
VERSION     DATAJL010000602.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36418"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..953
                     /locus_tag="VHN39_11625"
     CDS             <1..953
                     /locus_tag="VHN39_11625"
                     /inference="COORDINATES: protein motif:HMM:NF016101.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX2817039.1"
                     /translation="DQVLDPAAAPNIAGLAKLYGDATRFYGEVHPSEANYVAILGGDT
                     FGIHDDDAYYCKAGSTRPQCDGAMAAGYADHTVRSRHLGDQLLARGLSWKGYYESLPE
                     PGSPAVVAGDPTYDNGTRKTALYASKHSGFMNFADVQDDPRRPERIVGFEQLDRDLAA
                     GTLPTFALIVPNQCNEMHGLSGDGVPADCLGANKAALIRRGDAYAGALVKRIQATPAW
                     ASKGNVAIVITFDEGAGKARDGCCAVTLEAPSNFGGGHIPTIVITNHGPRGVSDDTPY
                     NHYSLLRTLEDAFGIEERLGHAADGTNGVRAMTPLFAVGP"
     gene            complement(1143..>1994)
                     /locus_tag="VHN39_11630"
     CDS             complement(1143..>1994)
                     /locus_tag="VHN39_11630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HEX2817040.1"
                     /translation="GFGRAEQAPSRPSPSQRQQQPCGDFLNWSAITAGTFDYAADAWG
                     YTYGAAAEWYRGDWAWRAGVFDLSIVPNNAVLTSDFSQFQVIGESERRFSWDGHPGAV
                     RIAGFVTRGGMGAYDDATRLALASGQPADVARVRRYRSRSGVYANLEQEVADGVGVFA
                     RLGWDDGSQESYEYTDIDRTAQAGVSVSGARWGRKGDTVGVAVVVNQLSAAGQRYLNA
                     GGLGILVGDGRLPHPGDEHIAEAYYAVGLAKGVTLTFDDQLVANPAYNRDRGPVDVLS
                     LRLHLER"
BASE COUNT          319 a          710 c          657 g          308 t
ORIGIN      
        1 acgatcaggt gctcgacccc gccgcggcgc ccaacatcgc cgggctcgcg aagctgtacg
       61 gcgacgcgac gcggttctac ggcgaggtgc atcccagcga ggctaactat gtcgcgatcc
      121 tgggcggcga caccttcggc atccacgatg acgacgccta ctactgcaag gccggctcga
      181 cccggcccca gtgcgacggc gccatggccg ccgggtacgc cgatcacacg gtccgcagcc
      241 gccatctcgg cgaccaactg ctagcgaggg ggctgagctg gaagggctac tacgagagct
      301 tgcccgaacc cgggtcgccg gctgtggtgg cgggcgatcc gacgtacgac aacggaacgc
      361 gcaagaccgc gctctacgct tccaagcact ccggcttcat gaacttcgcc gacgtgcagg
      421 acgacccgcg ccgccccgaa cgcatcgtcg gcttcgagca gctcgaccgc gatctcgccg
      481 ccgggacctt gccgaccttc gccctgatcg tccccaacca atgcaatgag atgcatggcc
      541 tgagcggcga tggcgtgccg gccgattgtc tcggcgccaa caaggccgcg cttatccgac
      601 ggggcgatgc ctacgccggc gcgctagtaa agcgaatcca ggccacgccc gcgtgggcga
      661 gcaagggcaa cgtcgccatc gtgatcacct ttgacgaagg cgcgggtaag gcccgcgacg
      721 gctgttgcgc cgtaactctg gaggcgccgt ctaatttcgg cggcggccac atcccgacca
      781 tcgtcatcac caaccacggc ccacgcggcg tcagcgacga cacgccatac aatcactact
      841 cgttgctgcg gaccctcgag gacgccttcg ggatcgagga gcggctgggc catgctgccg
      901 atggaacgaa tggtgtgcgc gccatgacgc cattgtttgc ggttgggccg tagcgtcgac
      961 ctttcgcggt tctgaggata ggttcgtagc gcccacattg agttcggcgc caaggtccgc
     1021 tttcccccca ttgcggacat tcgacaggtc cgcttccggg tctattgccg aggtccgctt
     1081 tctacccaaa gcggaccttc ggagagtccg cttacagtca cttcagcgag ccgcccgcgg
     1141 tcctaccgct ccaggtgcag gcgcagcgac agcacgtcca cgggcccgcg gtcgcggttg
     1201 taggcggggt tggcgaccaa ctggtcgtcg aaggtgagtg tcacgccctt ggcgaggccc
     1261 acggcgtagt aggcctcggc gatgtgctcg tcgccgggat gcggcagtcg cccgtcgccg
     1321 accaggatgc ccaggccgcc cgcgttcagg tagcgctgac cggccgccga gagctggttg
     1381 accacaacgg ccacgcccac cgtgtcgccc ttgcggcccc agcgcgcgcc ggagactgag
     1441 acgcccgcct gcgcggtgcg gtcgatgtcg gtgtattcgt aggactcctg gctgccgtcg
     1501 tcccagccga ggcgcgcgaa aacgccgacg ccgtcagcca cctcctgctc gaggttcgca
     1561 tagacgcccg accggctgcg gtagcggcgc acccgcgcga cgtcggccgg ctggccgctc
     1621 gccagcgcca gccgcgtcgc gtcgtcatag gcgcccatgc cgccgcgcgt cacgaaccca
     1681 gcgatccgca ccgcgcccgg atggccgtcc cagctgaacc gccgctcgga ctcgccgatc
     1741 acctggaact ggctgaagtc cgaggtcagc accgcgttgt tcggcacgat ggagaggtcg
     1801 aagacgcccg cccgccaggc ccagtcgccg cggtaccact ccgccgccgc cccataggtg
     1861 tagccccagg cgtcggcggc gtagtcgaac gtgccggcgg tgatcgcgct ccagttcagg
     1921 aagtcgccgc acggctgctg ttggcgctgc gatggagatg ggcggcttgg agcttgttcc
     1981 gcgcggccga agcc
//
LOCUS       DATAJL010000603         2233 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36435,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000603 DATAJL010000000
VERSION     DATAJL010000603.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36435"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(237..503)
                     /locus_tag="VHN39_11635"
     CDS             complement(237..503)
                     /locus_tag="VHN39_11635"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817041.1"
                     /translation="MSELRDTGARYELDEQGQTSWADYRRSGDRLYIDHVESPVALRG
                     TGAAGRLMAALAADARAKSLRLTPICGYAVAWLKRSKEFGDLVL"
     gene            572..1291
                     /locus_tag="VHN39_11640"
     CDS             572..1291
                     /locus_tag="VHN39_11640"
                     /inference="COORDINATES: protein motif:HMM:NF023696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3617 family protein"
                     /protein_id="HEX2817042.1"
                     /translation="MKRTIAILGGVAVVALLALGGCGKKSEDVTTVSKVTIVPSPGSP
                     LTNPPPRKAGLWEMKISTAGMNQTMKQCLDETVDQKMKLWGSQAQKGGKSDCEQQTIT
                     PHAGGGWDFHAVCKMGESGTVTSDGSATGDFGSHYKVEVNSVTSGSPMAQANGAHKTT
                     IEAAWTGPCPPDMKPGDMEMAGGMKINMLGGTPTVVTGPGGMDMAKLRAQAMSGHVDP
                     AEIARMRAQAKAMEAAAKPSQ"
     gene            1342..>2233
                     /locus_tag="VHN39_11645"
     CDS             1342..>2233
                     /locus_tag="VHN39_11645"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2817043.1"
                     /translation="MARTCDFVVVGLGAMGCGALAQLAGRGTVIGLERVGSGHPGGSS
                     HGESRILRLSNFENPAYGPLVSRAVEYWEAMERIPEEIFRKTGVLEAGPPGGELMAGT
                     RAAAEAGGFSSALLTAREAGARWPALTLPAGWEVRFQDGGGYLRADIALARLKEIALA
                     TGKAEIIDAGAAEIREADGAVTVVTDEGEQISAGAVVVTTGPWIDGLIPALRGRLTRS
                     RQVVGWFAGARAETVAVGRLPVFCFDHADGFLYGFPDFMGLGVKAAFHDLGETLARPE
                     DVGPPLPSEVERIRVLLQKLA"
BASE COUNT          326 a          717 c          857 g          333 t
ORIGIN      
        1 gcgccggccg gcgacctttc ccgcgccgtc gagccatgct ccggggcggg gtgcgcggtt
       61 gaccgcgatt tttcccgtca cccaatagtt gctccccata gggggagctg tcagcgaaga
      121 ctgactgagg gggtttcctc tccggcgttc aggatgtcgg ctgtcgcagg ctcggcggct
      181 gaaaccccct ccgtctcgtc gctccgcgcc gatccacctc cccctacggg gaggatctag
      241 agaaccaggt ccccgaattc tttgctgcgc ttcagccagg cgacggcgta gccgcagatg
      301 ggggtgaggc ggagtgattt ggcgcgggcg tcggcggcga gggcggccat gaggcggccg
      361 gcggcgcctg tgccgcgcag ggccacgggg ctctccacgt ggtcgatgta gaggcggtcg
      421 ccggaccggc ggtaatcggc ccaggaggtc tggccctgtt cgtccagttc gtagcgggcg
      481 ccggtgtcgc gcagctccga catatcgtgt tctcctgaat cgagatcgcg tctagcttcc
      541 cacaactggg cattgggctg ggaggttcaa gatgaaacgc acgatagcga tcctgggtgg
      601 cgtggcggtc gtggcgctgc tggcgctggg cggctgcggg aagaagtccg aggacgtgac
      661 cacggtgagc aaggtcacca tcgtcccctc gcccggctcg ccgctcacga acccaccccc
      721 gcgcaaggcg gggctgtggg aaatgaagat ctccacggcg ggcatgaacc agacgatgaa
      781 gcaatgcctg gacgagacgg tggaccagaa gatgaaactc tggggcagcc aggcgcagaa
      841 gggcggcaag tccgactgcg agcagcagac catcaccccg cacgcgggcg gcggctggga
      901 cttccacgcc gtctgcaaga tgggcgagag cggcacggtc acctccgacg gctcggccac
      961 cggcgacttc ggctcgcact acaaggtgga ggtgaactca gtgacctccg gctcgcccat
     1021 ggcccaggcc aacggggccc acaagacgac gatcgaggcc gcctggaccg gcccctgccc
     1081 gcccgacatg aagcccggcg acatggagat ggccggcggc atgaagatca acatgctggg
     1141 cgggacgccc acggtcgtga ccggccccgg cggcatggac atggccaagc tgcgcgccca
     1201 ggcgatgtcc ggccacgtgg accccgccga gatcgccagg atgcgcgccc aggccaaggc
     1261 catggaggcg gcggccaagc cgtcccagta ggggtcctcg ttttttggcg tgggctggct
     1321 cagttgctta gtgggtaggt gatggcgcgg acgtgcgatt tcgtggtcgt gggcctgggc
     1381 gccatggggt gcggagcgtt ggcgcagctg gccgggcgcg gcacggtgat cgggctcgag
     1441 cgggtgggct ccggccatcc cggcggctcc tcgcacggcg agagccggat cctgcgcctg
     1501 tcgaacttcg agaacccggc ctatgggccg ctggtcagcc gcgccgtgga atactgggag
     1561 gcgatggagc ggatcccgga ggagatcttc cgcaagaccg gggtgctgga ggcaggtccc
     1621 ccgggcggcg agttgatggc gggcacgcgg gcggcggccg aggccggcgg gttttccagc
     1681 gcgctcctga ccgcgcggga ggccggcgcg cgctggccgg cgctgacgct ccccgccggc
     1741 tgggaggtgc ggttccagga cggcggcggg tacctgcgcg ccgacatcgc tttagcccgg
     1801 ctgaaggaga tcgcgctcgc caccggcaag gcggagatca tcgacgccgg cgcggccgag
     1861 atccgcgagg ccgacggcgc ggtcaccgtg gtcaccgacg agggcgagca gatttccgcc
     1921 ggcgcggtgg tggtgaccac ggggccgtgg atcgacgggc tgatcccggc gctgcgcggc
     1981 cggctcaccc gctcgcggca ggtggtgggc tggttcgcgg gcgcgcgggc ggagacggtg
     2041 gcggtggggc gcctgccggt gttctgcttc gaccatgccg acgggtttct ctacgggttc
     2101 ccggatttca tgggcctggg cgtcaaggcc gcgttccacg acctgggcga gaccctggcc
     2161 cggccggagg acgtgggccc gccgctgccc tcggaggtcg agcgcatccg cgtgctgctg
     2221 cagaaactgg cgg
//
LOCUS       DATAJL010000604         1640 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_83137,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000604 DATAJL010000000
VERSION     DATAJL010000604.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1640)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1640)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1640
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83137"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..876
                     /locus_tag="VHN39_11650"
     CDS             <1..876
                     /locus_tag="VHN39_11650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2817044.1"
                     /translation="RKRLDGELEWVRSSARARQTKSRARLDRYDEMAAEADRNRKLDF
                     EEIQIPPGPRLGSQVIEVDNLEKEYGDKLLFKNLTFKLPPGGIVGVIGPNGAGKSTLF
                     KIITGQETPDQGSVKLGETVKLAYVDQSRDSLDPKKNVWEEISGGLDVMKVGGREIPS
                     RAYVGSFNFKGADQQKKVGLLSGGERNRVHLAKTLAAGGNVLMLDEPTNDLDVETLGA
                     LESALEDFPGCAVVISHDRFFLDRLATHILAFEGDSQVDWFEGNFEAYEEDKKRRLGA
                     DSLIPHRIKFQKFTR"
     gene            1091..>1640
                     /locus_tag="VHN39_11655"
     CDS             1091..>1640
                     /locus_tag="VHN39_11655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817045.1"
                     /translation="MVATDPAVAAPVFVNHGAVTYISNASQADATLVAADDGVINNLK
                     LWAGLTFLNDGSLHVQATEASATGFANEQNGPSIDNAGQLTVDGATEATGIASSAVLA
                     TITNSGQTIVTGGTGLAIGIDFAGGHLLQNAGLISVTSNATAATGIPSFDFLPDAADP
                     ALDHAIAALGVRLGDELELHNTG"
BASE COUNT          319 a          523 c          552 g          246 t
ORIGIN      
        1 cgcaagcgcc ttgacggcga gctcgagtgg gtcaggtcga gcgcccgcgc ccggcagacc
       61 aagtcaaggg cgcggctgga ccggtacgac gagatggccg ccgaggcgga ccggaaccgc
      121 aagctcgact tcgaggagat ccagatcccg ccgggcccgc gcctcggcag ccaggtgatc
      181 gaggtggaca atctggagaa ggaatacggc gacaagctcc ttttcaagaa cctgaccttc
      241 aagctgccgc cgggcggcat cgtgggcgtg atcgggccga acggggcggg caagtcgacg
      301 ctgttcaaga tcatcaccgg ccaggagacg ccggaccagg gctcggtgaa gctgggcgag
      361 acggtgaagc tcgcctacgt cgatcagagc cgcgacagcc tggaccccaa gaagaacgtc
      421 tgggaggaga tctccggcgg gctcgacgtg atgaaggtgg gcgggcgcga aatccccagc
      481 cgggcctatg tgggctcgtt caatttcaag ggcgctgacc agcagaagaa ggtcggcctg
      541 ctgtcaggtg gggaacgcaa ccgcgtgcac ctggccaaga ccctggcggc aggcggcaac
      601 gtcctgatgc tcgacgaacc caccaacgac ctggacgtgg aaaccctcgg cgccctggaa
      661 tcggcgctgg aggatttccc cggctgcgcc gtggtgatca gccacgaccg cttcttcctg
      721 gaccggctgg cgacgcacat cctggccttc gagggcgaca gccaggtcga ctggttcgag
      781 ggcaacttcg aagcctacga agaggacaag aagcgccgcc tcggcgccga cagcctgatc
      841 ccccaccgga tcaagttcca gaagttcacg cggtagggtt gcgcaaccgc aagcattgac
      901 ggatcccggc caatcgcaaa ggttgggggt caggagtgcg cgtcattgcg tttgggcgtg
      961 gaatcggcag gctccggcgt gggagtgcgt ccgcgaaatg ccaagcttta caacagatgt
     1021 gacgatcgcc gcgggcgcgt cccaacaggt gagggccgac cccagtccat tcccccagac
     1081 cgcgtttgac atggtggcga ccgaccccgc ggtggcggcg ccggtgttcg tcaaccacgg
     1141 ggccgtgacc tatatctcga atgcgagcca ggccgacgcc acgctggtcg ccgcggacga
     1201 tggcgtcatc aacaacctta aactttgggc gggcctcacc ttcctgaacg acgggagcct
     1261 gcatgttcag gccaccgaag cgtccgcgac ggggttcgcc aacgagcaga acggcccgag
     1321 catcgacaac gccggccagc tcacggtgga tggtgctacc gaggcgacgg gcattgcgtc
     1381 gtcggccgtc ttggcgacga tcaccaacag cggccagacc atcgtgaccg gtggaactgg
     1441 cctggccata ggcatcgatt tcgcgggcgg tcatctgctc cagaacgccg ggctgatctc
     1501 cgtgacgtcg aatgccacgg cggccactgg tattccgtcg ttcgattttc tgcccgacgc
     1561 tgcagacccc gcgctggacc acgccatcgc cgccctgggc gtcaggctcg gcgacgagct
     1621 cgaattgcac aacaccggaa
//
LOCUS       DATAJL010000605         2091 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_120278,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000605 DATAJL010000000
VERSION     DATAJL010000605.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120278"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(119..>2091)
                     /locus_tag="VHN39_11660"
     CDS             complement(119..>2091)
                     /locus_tag="VHN39_11660"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEX2817046.1"
                     /translation="TADTPSEASNALFRGAVAQTGEATAIAIGTGANTLFGEAAKSLT
                     AAAEISPFQRDLRQLGFLVARATGVLVVGVLAANVAFGRPLIQSLMFSVALAVGLTPE
                     LLPMITTVTLSRGAVRMARKRVIVKRLTAIHDLGAMTVLCTDKTGTLTSAEIVLAGSL
                     GPSGKPADRPAQLGAVCARLGGDLGSLDEALGKAWPDAAKGWTLRGRLPFDYERRMGA
                     VLAKGPEGPLLIVKGAPEAVLAACTRVGGKPLGAAARKAALARVKDLAGQGLRSVAVA
                     SRPWKGALRDPVAHDEASLTFEGLCTFADPPKASAPAAVARLAAAGVRVVVLSGDDPL
                     VVERLAKLVGMRAQKVITGSQLARLGVDALRVRARDTDVYARLAPDQKVRLIHALRSS
                     GEIVGFMGDGVNDAPGLKAADVGLSVQGATAVAIAAADMVLLESDLAVVADGVEEGRR
                     TFANILKYVRMGASSNFGNMLSMAVASLFLPFLPMLATQILLNNLLYDLSEIGIPFDS
                     VKAADIAEPQHWRLKDIVRFAAVMGPLSSVFDLATFGVLMWAFRTGPEVFRTSWFLES
                     IATQTLVVFLIRTRGRPWRDAPNPLLTVSTLGALAAALIIPFSPLGAWFGFQAPGAQL
                     TVALAGVVAAYLVCAELLKPLAIEGSARTRAT"
BASE COUNT          341 a          767 c          713 g          270 t
ORIGIN      
        1 cagtacgtcg ccgagcgcgg ccgatcggag cgcgagcgct gcacgaccaa ggcctgcatc
       61 gaacgctcct acgccgccga ggaagcgcgg cttcggaagt gggaaggctc cggcgacatc
      121 aggtagctct cgtccgagcc gatccttcga tggccagcgg cttcaggagc tcggcgcaga
      181 ccagataggc cgcgacgacc ccggccaggg cgaccgtcag ctgtgcgccc ggcgcctgga
      241 aaccgaacca ggcccccagc ggcgagaacg ggatgatcag cgccgccgcc aaggcgccaa
      301 gggtcgagac cgtcagcagc ggattgggcg cgtcgcgcca gggccttccg cgggtgcgga
      361 tcaggaacac caccagggtc tgggtggcga tggactccag gaaccagctc gtacggaaca
      421 cctccggacc cgtccggaac gcccacatca ggacgccgaa cgtggccagg tcgaagaccg
      481 acgacagcgg ccccatgacc gcggcgaacc gcacgatgtc cttgagccgc cagtgctgcg
      541 gctcggcgat gtcggccgcc ttcaccgagt cgaacgggat gccgatctcg gacaggtcat
      601 agagcaggtt gttgagcagg atctgtgtcg ccagcatcgg caggaacggc aggaacaggg
      661 aggcgaccgc catcgacagc atgttgccga aattcgaact ggcgcccatc cggacgtact
      721 tcaggatgtt ggcgaaggtc ctgcgcccct cctcgacccc gtcggccacc accgccaggt
      781 ctgactccag caggaccatg tcggcggcgg cgatggcgac tgcggtggcg ccctgcaccg
      841 agagcccgac atcggccgcc ttcagccccg gtgcgtcatt caccccatcg cccatgaagc
      901 ccacgatctc gccgctggac cgcagggcat ggatgaggcg caccttctgg tcgggcgcca
      961 gccgcgcata gacatccgta tcgcgcgccc gcacccgcag ggcgtcgaca ccgagccttg
     1021 ccagctgcga gcccgtgatc accttctggg cgcgcatacc gaccagcttg gccagccgct
     1081 cgaccaccag ggggtcgtcg ccggacagca ccaccacccg cacaccggcc gccgcgagcc
     1141 gcgccaccgc cgccggcgcg ctggccttgg gcgggtcggc gaaggtgcac aggccttcga
     1201 aggtcaggct cgcttcgtcg tgggcgaccg gatcgcggag cgcgcccttc cacggccgag
     1261 acgcgaccgc gacggatcgc aaaccctgtc ccgccaggtc cttgacccgc gccagggcgg
     1321 ccttgcgtgc ggccgcaccc agcggcttgc cgccgacccg agtgcaggcc gccagcaccg
     1381 cttcgggcgc gcccttgacg atcagcagcg gcccctcggg ccccttggcc agcaccgcgc
     1441 ccattcggcg ttcgtagtcg aagggcagac ggccgcgcag cgtccagccc ttggccgcat
     1501 caggccacgc cttgccgagc gcctcgtcca gtgagcccag gtcgccgccc aggcgggcgc
     1561 agaccgcgcc aagctgcgcc ggccggtccg cgggcttccc gctcggtccc aggctgccgg
     1621 ccaggacgat ctcggccgag gtgagggttc cggtcttgtc ggtgcacaac accgtcatgg
     1681 cgcccagatc gtggatcgcg gtcagccgct tcacgatcac ccgcttgcgc gccatccgca
     1741 ccgccccgcg tgacagggtg acggtggtga tcatcggcag cagttccggc gtcagcccca
     1801 ccgccagcgc caccgagaac atcagcgact ggatcagggg ccggccgaat gcgacgttgg
     1861 ccgccagcac gccgaccaca aggacgccag ttgcccgggc gaccaggaac cccagctggc
     1921 gcaggtcgcg ctgaaacggc gagatttcgg cggcggcggt gagcgacttg gccgcctcgc
     1981 cgaagagggt gttggcgccg gtgccgatcg cgatcgccgt cgcctcgccc gtctgggcga
     2041 cggccccgcg gaagagggcg ttgctggctt cggacggggt gtcggccgta a
//
LOCUS       DATAJL010000606         3710 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68657,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000606 DATAJL010000000
VERSION     DATAJL010000606.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3710
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68657"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..647
                     /locus_tag="VHN39_11665"
     CDS             <1..647
                     /locus_tag="VHN39_11665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEX2817047.1"
                     /translation="VVVDEMADLMMVAGKEIEQAVQRLAQMARAAGIHVIMATQRPSV
                     DVITGTIKANFPTRISFQVTSKIDSRTILGEQGAEQLLGQGDQLYMAGGGRITRLHGP
                     FVSDGEVEAVAKFLRGQGQPQYLEEVTAAPDEDGEAGDFGFGGGEGGESNDLYDRAVA
                     VVTRDGKASTSYIQRRLQIGYNRAASLMERMEQEGVVGAANHAGKREILVSAAP"
     gene            complement(654..1379)
                     /locus_tag="VHN39_11670"
     CDS             complement(654..1379)
                     /locus_tag="VHN39_11670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817048.1"
                     /translation="MTVSNELLASLGRRSRLGGVLSLVGVVMVFATLGIGLLQVRDLE
                     SHKAQLSKDIDDLGRQKAALSGEVQTLRAKNEDQQDLIGNAQLKIAAGETPAAAKILS
                     NAPAPAAIVKRVYFQARSPDQTPIFQRCARVLLAKGYRVPRLQMVPNTGPQQASIRYF
                     HDGEADEASQLANDLGACAGTDFKVTRIGGYEQSANVKPNQFEVWFSADLTDAAAPPQ
                     AQQSAPSQQVQQQNAPEQHHHRR"
     gene            complement(1376..1648)
                     /locus_tag="VHN39_11675"
     CDS             complement(1376..1648)
                     /locus_tag="VHN39_11675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817049.1"
                     /translation="MGDPLDDRLRVVQALVKLFSFERYVYLATNGFSVLMLLLAAARL
                     LITQKPDTAVLLALFGSTGLITFSLGRVLRMWDQAVRVLIGAKTDP"
     gene            1843..2346
                     /locus_tag="VHN39_11680"
     CDS             1843..2346
                     /locus_tag="VHN39_11680"
                     /inference="COORDINATES: protein motif:HMM:NF012659.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817050.1"
                     /translation="MRLPSLILAAGLAGMSLPALAAPACAIPANLAPAPVVAPRADEA
                     VKGVTNAVYLLSLNWTPQWCLTGGSGASAREMECEQPFGFTLHGLWPNGVTRPYPRYC
                     RPVGGLDAATVRQMFCRTPSPTLLQHEWQAHGSSAGPIRRPISRREPGSTTVWSCRRS
                     RRFPPIG"
     gene            2310..2555
                     /locus_tag="VHN39_11685"
     CDS             2310..2555
                     /locus_tag="VHN39_11685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817051.1"
                     /translation="MPKIEAIPADRLTAGAIRAAFIARNPAFSADEIYVQTTRAEALD
                     EVRLCYGLSFRPTACPGGTGAPDGVRIRLAPSRSGAF"
     gene            2625..3275
                     /locus_tag="VHN39_11690"
     CDS             2625..3275
                     /locus_tag="VHN39_11690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA];
                     GO_process: GO:0044874 - lipoprotein localization to outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein carrier protein LolA"
                     /protein_id="HEX2817052.1"
                     /translation="MPTRRRLLALAAAVAALAPFGALAAPAAPVALSADDQALVDKAV
                     AYLQGLGEARGRFVQSDGRGAATQGELFLKRPGKARFAYDPPSGLLVVSDGGRVIVQD
                     KRLNTFTAYPLGATPLSLLLAKTIRLDKGVQVTRVTRAADGFSITARDGKKETAGQIT
                     LSFADNPMSLVSWAVTDAQGRTTQVRISGLQRTSGLDPELFVLKDTRPKRPDPGRM"
     gene            3507..>3710
                     /locus_tag="VHN39_11695"
     CDS             3507..>3710
                     /locus_tag="VHN39_11695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEX2817053.1"
                     /translation="MRLRICTWNVNSVRLRAEQAARFVAEQAPDVLCMQEIKCQEGEF
                     PRAAFIDMGLPHLKIAGQKGWHGV"
BASE COUNT          569 a         1298 c         1270 g          573 t
ORIGIN      
        1 tggtggtggt cgatgagatg gccgacctga tgatggtcgc cggcaaggag atcgagcagg
       61 cggtgcagcg cctggcgcag atggcccgcg ctgccggcat ccacgtcatc atggcgaccc
      121 agcggccgtc ggtggacgtg atcaccggca ccatcaaggc caacttccca acccggatca
      181 gcttccaggt cacctccaag atcgacagcc gcaccatcct gggcgagcag ggcgccgagc
      241 agctgctggg ccagggcgac cagctctaca tggccggcgg cggccgcatc acccgcctgc
      301 acggaccctt cgtcagcgat ggagaggtgg aagcggtggc caagttcctg cgcgggcagg
      361 gccagccgca atacctcgag gaggtcaccg cggcccccga cgaagatggc gaggccggcg
      421 acttcggctt cggcggcggc gagggcggcg agagcaacga cctctacgac cgcgccgtgg
      481 cggtggtcac ccgcgacggc aaggcgtcca ccagctacat ccagcgccgc ctgcagatcg
      541 gctacaaccg cgccgcctcg ctgatggagc ggatggagca ggagggcgtg gtcggggccg
      601 ccaaccacgc cggcaagcgc gagatcctgg tgagcgccgc gccctgaggc ggctcagcgc
      661 cggtggtgat gttgctccgg cgcgttctgt tgctgcacct gttgcgaagg agccgactgc
      721 tgcgcttgcg gcggcgcggc ggcgtcggtc agatcggcgg agaaccacac ctcgaactgg
      781 ttcggcttga cgttggcgga ctgctcgtag ccgccgatcc gggtgacctt gaagtcggtc
      841 ccggcgcacg cgcccagatc gttggcgagc tggctggctt cgtcggcctc gccgtcgtgg
      901 aagtagcgga tgctggcctg ctgcggcccg gtgttgggga ccatctggag ccgcggcacc
      961 cgatagccct tggccagcag cacgcgcgcg cagcgctgga agatgggcgt ctggtcgggc
     1021 gacctggcct ggaagtagac ccgtttgacg atggccgccg gcgcgggggc gttggacagg
     1081 atcttcgcgg ctgcgggcgt ctcgcccgcc gcgatcttca gctgcgcatt gccgatcagg
     1141 tcctgctggt cctcgttctt ggcgcgcagg gtctggacct caccgctgag tgcggccttc
     1201 tggcggccga ggtcatcgat atccttcgac agctgcgctt tgtgagattc aaggtcgcgc
     1261 acctgcagga ggccgatgcc cagggtcgcg aagaccatca cgacgccgac caggctgagg
     1321 accccgccaa ggcgcgagcg ccggccaagc gacgccagaa gctcgttcga caccgtcacg
     1381 gatcggtctt cgcgccgatg agcacgcgca ccgcctggtc ccacatgcgc agcacccggc
     1441 ccaaggagaa ggtgatgagg ccggtcgagc cgaagagcgc cagcagcacc gcggtgtcgg
     1501 gcttctgggt aatcagcagc cgtgcggccg ccagcagcag catgagcacc gaaaagccgt
     1561 tggtcgccag gtagacgtag cgctcgaagc tgaacagctt caccagcgcc tggaccacac
     1621 gcagccgatc gtcgagtgga tcccccatct gcgcctcgca ccttcgccga ccggctgacc
     1681 cggcggccca cggccccaac ggccgttagc ttggctgcag ataacgcacc cagggcgtgt
     1741 ggccgtcaat ccggcatatc tgcggtaggc gaaaacgatc gtcgcgccct ggcctcgctt
     1801 tgcgtgtaga aacccgccgc ctgtcgccct gcggagcccg ccatgcgttt gccgtctctg
     1861 atcctcgccg ccggacttgc cggcatgagc ctgccggcgc tggcggcgcc ggcctgcgcc
     1921 atccccgcca acctcgcgcc ggccccggtc gtggcgcccc gcgccgacga ggcggtgaag
     1981 ggggtgacca acgcggtcta tctgttgtcg ctcaactgga cgccgcagtg gtgcctgacc
     2041 ggcggatcgg gcgcgagcgc cagggagatg gagtgtgagc agccgttcgg cttcaccctg
     2101 cacggccttt ggcccaacgg cgtcaccagg ccctatccgc ggtactgcag gcccgtcggc
     2161 ggcctggatg cggccacggt gcgccagatg ttctgccgca cgccctcgcc caccctgctg
     2221 cagcatgagt ggcaggcgca cggctcctcg gctggaccga tccgaaggcc tatttcgcgc
     2281 agggagcccg gctctacgac cgtctggtca tgccgaagat cgaggcgatt cccgccgatc
     2341 ggctgaccgc cggagcgatc cgcgccgcct tcatcgccag gaaccccgcg ttttcagccg
     2401 acgagatcta tgtccagacc acccgggccg aggcgctgga cgaggtgcgg ctctgctatg
     2461 gactgtcctt caggccgacg gcctgcccgg gtggtaccgg cgcgccggac ggggtccgca
     2521 tccggctcgc gcccagccgt tcgggcgcct tctagcggct cggacgtttg agccatcctg
     2581 ccgccacgat ggccggccag ccttcgccca tgaggagcgc ctcgatgccc acccgccgcc
     2641 gactgctagc cctggccgcc gccgtcgccg cgctcgcgcc gttcggcgca cttgccgccc
     2701 cggccgcgcc cgtcgccctg tcggctgacg accaggcgct ggtggacaag gcggtggcct
     2761 atctgcaggg gctcggcgag gcgcgcggcc ggttcgtcca gagcgacggg cgcggggcgg
     2821 cgacgcaggg cgagctcttc ctgaagcggc ccggcaaggc gcgcttcgcc tacgatccgc
     2881 cgtccggcct gctggtggtc tccgacgggg gccgggtgat cgtgcaggac aagcggctca
     2941 acacctttac ggcctacccc ctgggcgcga cgccgctgtc gttgttgctg gccaagacca
     3001 tccggctcga caagggcgtg caggtgaccc gcgtcacccg cgcagccgac ggcttttcga
     3061 tcaccgcccg cgacgggaag aaggagaccg ccggccagat cacgctgtcc ttcgcggaca
     3121 atccgatgtc gctggtcagc tgggcggtga ccgacgccca gggccgcacc acccaggtgc
     3181 ggatttccgg ccttcagcga acctctggcc tcgatccgga gctgttcgtc ctgaaggaca
     3241 cgcgcccgaa acgcccggat ccaggccgaa tgtgatgaat tcgcaacgag caagggctaa
     3301 ctgatcggtg cttgacttta gcaatgcctg ttgcgctaat gacactacgc cattggcgcg
     3361 cgcacgcgcc gacggaaccc gtgccggacc caatcccctc ccggcggcgg catgagaacc
     3421 cactgaaacg cccgggcttc tccagtgccc gggcgtctct ttgtccgctc catttcattc
     3481 gctgacgacc ggctttaagg agcgggatgc gccttcgaat ctgcacctgg aacgtcaact
     3541 ccgtccgcct gcgcgccgag caggccgcgc gcttcgtggc cgaacaggcg ccggacgtgc
     3601 tgtgcatgca ggagatcaag tgccaggagg gcgagttccc gagggctgcc ttcatcgaca
     3661 tgggcctgcc gcacctgaag atcgccggcc agaagggctg gcacggcgtc
//
LOCUS       DATAJL010000607         5554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36515,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000607 DATAJL010000000
VERSION     DATAJL010000607.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5554
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36515"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..867
                     /locus_tag="VHN39_11700"
     CDS             <1..867
                     /locus_tag="VHN39_11700"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ectonucleotide
                     pyrophosphatase/phosphodiesterase"
                     /protein_id="HEX2817054.1"
                     /translation="WWDQAEPIWVTAERAGIVTGAMFWPGSEADIHGLRPHYAPHFDI
                     KVPSDDRVDQLLGWFDKPPAERPRFATIYFDAVDTAGHKSGPDSPGVNAATAQVDTAI
                     GRLEAGLKARGIVANIIVVADHGMAATSDERRVFLDDLVAKDAYRSLDMGPIGTIYPN
                     PGHEAEVAKALVGAHPHLECWLKKDIPARFHYGKNPRVAPIFCLPQTGWLLSTHDFRP
                     KEGVTGDHGYDNMSPEMAAVFVANGPAFRHGVVLETFDNVDVYPLLAKLVGVHPQPND
                     GNLGDLEAALTK"
     gene            914..1402
                     /locus_tag="VHN39_11705"
     CDS             914..1402
                     /locus_tag="VHN39_11705"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817055.1"
                     /translation="MADAPTFTPTAFYRDPLAALKWLEAAFGFETTVLVTEPSGRVGY
                     SEMSFHGGSVSINPEFASEIIGEARMVSPLAIEGRGTQFIRVHLAEGLDAHCERARAA
                     GARITQDPHDEFYGERTYRAVDPEGHVWNFAQPTSAPTIAEMEEASGLKLSTSLADAG
                     HG"
     gene            1395..1850
                     /locus_tag="VHN39_11710"
     CDS             1395..1850
                     /locus_tag="VHN39_11710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817056.1"
                     /translation="MADWRAPLMSAVCYLDPKAAIAWLEQAFGFEVSMLIEDADGGLA
                     HSEMRFGNAAVMIGNEWSEDHKSPRSIGGKNTQTVHIQLTSDIDAHCERARAAGAEIL
                     VEPATQFYGDRTYRCRDPEGHIWTVSQTVEAVSREQAEAISGLKITGWV"
     gene            1850..2227
                     /locus_tag="VHN39_11715"
     CDS             1850..2227
                     /locus_tag="VHN39_11715"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2817057.1"
                     /translation="MARFDLETTYLSLDGHGAVAAHPVGPDFWTAIGENADILGTLVT
                     VSTADRDWTSWEMHPEGAEVLVLLEGELTMVLDSGGHEARHPMAPGATLVIPKGTWHR
                     ALIAAPIRMLFVTYGAGTTHRPI"
     gene            2227..2562
                     /locus_tag="VHN39_11720"
     CDS             2227..2562
                     /locus_tag="VHN39_11720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX2817058.1"
                     /translation="MAAAQANIDVTLAALADPHRRRVVDLLSRGPRAAGDLARELELT
                     PPAMSRHLRTLRQSGLVEESHPTFDARVRIYALRPEPMVHLLRWLEEAERLWSEQLAA
                     FKAHLERDV"
     gene            2559..3038
                     /locus_tag="VHN39_11725"
     CDS             2559..3038
                     /locus_tag="VHN39_11725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008877607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX2817059.1"
                     /translation="MTSKVYVALRVKATPERAFAAFVDEIGAWWRPSPLFQTTPRPGR
                     LSFEFARGSPGEGGRLIETREGGKVFEIGKITAWEPPHRLAFSWRQANFPLDLRTEVE
                     VGFQAVGDETRVSVEHRGFDQMPKESAARHRFPDQMLLMRLADFWRGQIASIGERLG"
     gene            3091..4356
                     /locus_tag="VHN39_11730"
     CDS             3091..4356
                     /locus_tag="VHN39_11730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TCR/Tet family MFS transporter"
                     /protein_id="HEX2817060.1"
                     /translation="MSDPAIPAARPGRRAAFGFIFATALMNAISFGIMIPVLPNLIKQ
                     FTGGDYAAASLTNVLFATVWGLMQFICGPVLGMLSDRIGRRPVLLISLGGLAIDFLFM
                     ALAPSLSWLFLGRVINGMTAASFSTAGAYVADVTPPEQRAKTFGFLGSAFSFGFLVGP
                     ALGGLLAQHSLRLPFFVAAALTSVNWIYGLFVLPESLPPERRIARFDWRRANPVGSLN
                     FLRRHAELLDLAFINFLFFLAQNVLPSIFVLYAGYRYHWTPLMMGLTLMGTGALGVAV
                     QLLLVGPVVARIGERGTMLLGALGGALGFALYGFAATGWFYIASAPVFALMSLMQPGL
                     QGLMTRRVGPREQGQLQGANQSLQGIASIIGPLVFGTLFAFAVRHDATLHAPGLPIFL
                     AGGLLVIAFVFGLRVHRGPGAVPDAPHGA"
     gene            4423..>5554
                     /locus_tag="VHN39_11735"
     CDS             4423..>5554
                     /locus_tag="VHN39_11735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX2817061.1"
                     /translation="MRAHRVLIPTLALATACLTASVGQAQTASPDGPRVVPVSAMGLK
                     QSFAPIVKRAAPAVVNISSKRTVRQQDPFWSRFGMGVPRDRVEGSLGSGVIVRSDGVI
                     VTNNHVIAGGQEITVALFDRREFVAKVLLADPRTDLAILKIDLPAGEKLPTMPIAERT
                     DSQVGDLVLAIGDPFGVGQTVTNGIISALNRTPDSESDAGAYIQTDAAINPGNSGGAL
                     VSMDGDLVGVNSFIYSQSGQSSGIGFAIPALVVRRVVETAMGGGSTVVRPWLGARLQS
                     VTPEIAKTAGLATPSGARISDVWPDGAAARAGLKQGDIVTSVDGAPVVDAAALNYAFG
                     THRPGETLRVSVRRAGGEQAMSVRAEAAPATPARDEQVIAGRN"
BASE COUNT          825 a         1915 c         1891 g          923 t
ORIGIN      
        1 tggtgggacc aggccgagcc gatctgggtg acggctgaac gcgccggcat cgtcaccggc
       61 gccatgttct ggccaggctc agaggcggat atccacggcc tgcggccaca ctatgcgccc
      121 cacttcgaca tcaaggtccc gtccgacgac cgcgtcgacc aactgcttgg ctggttcgac
      181 aagccgccgg ccgaacggcc gcgcttcgcc acgatctatt tcgacgccgt cgatacggcc
      241 ggccacaagt ccgggccgga ctcgcccggc gtgaacgccg cgaccgccca ggtggacacc
      301 gccattggcc gactcgaggc gggcctgaag gcgaggggga tcgtcgccaa tatcatcgtg
      361 gtggccgacc acggcatggc ggccacgtca gacgaacggc gggtgttcct cgacgacctg
      421 gtcgccaagg acgcctaccg ctcgctggat atggggccaa tcggcacgat ctatccgaac
      481 cccggccacg aggcggaggt cgccaaggcc ctggtgggcg cccatccgca cctggaatgc
      541 tggctgaaga aggacatccc cgcgcgcttc cactacggca agaacccccg cgtcgcgccg
      601 atattctgtc tgccgcagac cggctggctg ctgtcgacgc acgacttccg gccaaaggag
      661 ggcgtcacgg gcgaccatgg ctatgacaac atgagcccgg agatggcggc ggtcttcgtg
      721 gccaatggcc cggccttccg tcacggcgtc gtgctcgaga ccttcgacaa cgtcgacgtc
      781 tatccgctgc tggccaagct ggtcggcgtg cacccccagc ccaacgacgg aaacctgggc
      841 gacctggagg cggccttgac gaagtaattg cgatatgagt taaatattgt cgtccaccgc
      901 aaggaatagc gccatggccg atgcccccac cttcacgccc accgccttct atcgagaccc
      961 gctcgccgcc ctgaaatggc tggaagcggc gttcggcttt gagaccaccg tcctggtgac
     1021 cgagccctcg gggcgggtcg gctattccga gatgagcttc cacggcgggt cggtcagcat
     1081 caatccggag ttcgccagcg agatcatcgg cgaggcgcgc atggtgagtc cgctggccat
     1141 cgaggggcgg ggcacccagt tcatccgcgt ccacctggcc gagggcctcg acgcgcactg
     1201 cgagcgggcg agggcggccg gcgcgcgcat cacccaggac ccgcacgatg agttctacgg
     1261 cgagcggacc taccgcgcgg tcgatccgga ggggcacgtc tggaatttcg cccagccgac
     1321 atcagcgccc accatcgcgg agatggagga ggccagcggc ctcaagctct cgacctcgct
     1381 ggcggacgcc ggtcatggct gattggcgcg cgcccctgat gtcggccgtc tgctacctgg
     1441 acccgaaggc ggccatcgcc tggctggaac aggcctttgg cttcgaggtt tccatgctga
     1501 ttgaggatgc cgacggtggc ctcgcgcact cggagatgcg gttcggcaat gcggcggtga
     1561 tgatcggcaa cgagtggagc gaggatcaca agagtccgcg ctcgatcggc ggcaagaaca
     1621 cccagacggt gcacatccag ctcaccagcg atatcgatgc ccattgtgag cgggcgcggg
     1681 cggcgggcgc ggagattctg gtggagccgg ccacccagtt ctacggcgac cgcacctacc
     1741 gttgccgcga tcccgaaggc cacatctgga ccgtttccca gacggtcgag gcggtcagcc
     1801 gcgaacaggc cgaggcgatc agcggcctga agatcacggg ctgggtctga tggcgcggtt
     1861 cgatctggag accacctatc tcagcctcga tggtcacggc gccgtggcgg cgcatccggt
     1921 cgggccggac ttctggacgg ccatcggtga gaacgccgac atcctgggga ccctggtcac
     1981 ggtctcgacg gcagaccgcg actggaccag ctgggagatg caccccgagg gcgcggaggt
     2041 cctggtcctg ctggaaggcg agctgaccat ggttctcgac agcggcggcc atgaggcgcg
     2101 ccacccgatg gcgccggggg ccaccctggt gatcccgaag gggacctggc accgggcgct
     2161 gatcgccgcg ccgatccgca tgctgttcgt cacctacggc gccggcacga cccatcggcc
     2221 catctgatgg ccgcggccca ggccaatatc gatgtgacgc tggcggccct ggccgatccg
     2281 catcgccgcc gcgtggtcga tctcctcagc cgggggccgc gggcggcggg cgatctggcg
     2341 cgcgagttgg agctgactcc gccggccatg agccgtcacc tgcgaacgct gcgccagagc
     2401 gggctggtgg aggagtcgca tccgaccttc gacgcgcgcg tgcgcatcta tgccttgagg
     2461 cctgaaccca tggtccacct gctgcgctgg ctggaggagg cggaacggct ctggagcgag
     2521 cagctcgcgg ccttcaaggc ccatctcgag cgggacgtat gacctcgaag gtctatgtgg
     2581 cgctgcgcgt gaaggcgacg cctgagcggg cgtttgcggc cttcgtcgac gagatcggcg
     2641 cctggtggcg gccaagcccc ttgttccaga ccacgccgcg gcccgggcgg ctctcgtttg
     2701 agtttgcaag gggctcgccg ggcgagggcg gtcggctgat cgaaacccgc gagggcggca
     2761 aggtcttcga gatcggcaaa atcaccgcct gggaaccacc ccatcggctg gctttctcct
     2821 ggcggcaggc gaacttccct ctcgatcttc gcaccgaggt cgaggtcggg ttccaggctg
     2881 tgggcgacga aacccgggtc agcgtcgagc atcgcggctt cgaccagatg ccgaaggaga
     2941 gcgccgcgcg ccaccgcttc cccgaccaga tgctgctgat gcggctggcc gacttctggc
     3001 gcggccagat cgcctcgatc ggcgagagat tgggataacc cggttgcttg agttcctgct
     3061 ttgtttcatg atcagcgcgg gggaacaccg atgagcgatc cagcgatacc ggccgcgcga
     3121 cccggccgcc gcgccgcgtt cggcttcatc ttcgccacgg ccttgatgaa cgcgatttcg
     3181 ttcgggatca tgatcccggt ccttcccaac ctgatcaagc agttcaccgg cggcgactac
     3241 gccgcggcct cgctgaccaa tgtgctgttc gccaccgtct gggggctgat gcagttcatc
     3301 tgtggcccgg tcctggggat gctttcggac cggatcgggc gcaggccggt gctgttgatc
     3361 tcgctgggcg gcctggcgat cgatttcctg ttcatggcgc tggcgcccag cctttcctgg
     3421 ctgttcctgg gccgggtgat caacgggatg acggcggcca gcttctccac cgccggcgcc
     3481 tatgtggctg acgtcacgcc gccggagcag cgggccaaga cctttggctt tctgggctcg
     3541 gccttcagct tcggattcct ggtcggcccg gccctcggcg gcctcctggc ccagcactcc
     3601 ctgcggctgc cgttcttcgt cgccgcggcc ctgaccagcg tgaactggat ctatggcctc
     3661 ttcgtcctgc cggagtccct gccgccggaa cgccgcatcg cgcgcttcga ctggcgccgc
     3721 gccaatccgg tggggtcgtt gaatttcctg cgccgccacg ccgaactcct ggacctggcc
     3781 ttcatcaact tcctcttctt cctcgcccag aacgtgttgc cctcgatctt cgtgctctac
     3841 gccgggtacc gctaccactg gacgccgctg atgatgggcc tgacgctgat ggggaccggc
     3901 gcgctgggcg tggccgtcca gctgctgctc gtggggccgg tggtggcgcg catcggcgag
     3961 cgaggcacga tgctgctggg cgcgctcggc ggggccctgg gcttcgcgct ttatggcttt
     4021 gcggccaccg gatggttcta catcgcctcg gcgccggtgt tcgccctgat gagcctcatg
     4081 cagccgggtt tgcagggcct gatgacccgg cgggtggggc cgcgggagca gggccagctg
     4141 cagggcgcca accagagtct gcagggcatc gcctcgatca tcgggccgct ggtgttcggg
     4201 acgctcttcg cttttgcggt gcgccacgac gcgaccctgc atgcgcctgg cctgccgata
     4261 ttcctggcgg gcggcctgct tgtgatcgcc ttcgtctttg gcctgcgcgt gcaccgtggg
     4321 ccgggcgccg ttccggatgc gccgcatggc gcctgaggct cgccattaaa gcgcctgaaa
     4381 acccgggcga actgggttcc aagacctgac cctggagtca ccatgcgcgc tcatcgcgtc
     4441 ttgatcccga ccctcgccct cgccaccgcc tgtttgacgg cgtccgtcgg ccaggcccag
     4501 acggcctcgc cggacggtcc ccgcgtcgtg ccggtcagcg ccatgggcct gaagcagtcc
     4561 ttcgcgccga tcgtgaagcg cgcggcgccg gcggtggtga acatctcctc caagcgcacg
     4621 gtccgccagc aggatccgtt ctggtcacga ttcggcatgg gcgtgccgcg cgatcgggtc
     4681 gaagggtccc tggggtccgg cgtgatcgtg cggtccgacg gggtgatcgt caccaacaac
     4741 cacgtgatcg ccggcggcca ggagatcacc gtggcgcttt tcgaccggcg cgagttcgtg
     4801 gccaaggttc tgctggccga cccgcgcacc gacctcgcca tcctgaagat cgacctgccg
     4861 gccggcgaga agctgcccac catgcccatc gccgagcgca ccgacagcca ggtgggcgac
     4921 ctggtgctgg ccatcggcga ccccttcggc gtcggccaga cggtgaccaa cgggatcatc
     4981 tcggcgctca accgcacccc cgacagcgaa agcgacgccg gcgcctacat ccagaccgac
     5041 gcggcgatca atcccggcaa ttccggcggc gcgctggtca gcatggacgg cgacctcgtc
     5101 ggtgtgaaca gcttcatcta ttcgcagtcc ggccaatctt ccggcatcgg gttcgcgatt
     5161 cccgcgctgg tggtgcgccg cgtggtcgag acggccatgg gcggcgggag cacggtggtc
     5221 cgtccgtggc tgggcgcgcg cctgcagagc gtgaccccgg agatcgccaa gaccgcgggc
     5281 ctcgccacgc cctccggcgc ccggatctcc gacgtctggc cggacggcgc ggcggcccgc
     5341 gcgggcctga agcagggtga catcgtcacc tcggtggacg gcgccccggt ggtcgacgcc
     5401 gcggccctca actacgcctt cgggacccat cggccgggcg agaccctgcg cgtcagcgtg
     5461 cgccgcgccg gcggagagca ggccatgagc gttcgcgccg aggccgcccc cgccaccccc
     5521 gcccgcgacg aacaggtgat cgccggccgc aatc
//
LOCUS       DATAJL010000608         1864 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_23260,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000608 DATAJL010000000
VERSION     DATAJL010000608.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23260"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..654)
                     /locus_tag="VHN39_11740"
     CDS             complement(<1..654)
                     /locus_tag="VHN39_11740"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2817062.1"
                     /translation="MKLATLLTALVLTLPGMALAKPLFQPWIDGTVVAEPPMQVQRYD
                     RDTFVIRQSVKTNFEAPFLYLLFGKDRALLLDSGAGGLKIRPTIDGVIADWLKAHHRT
                     SIPLVVAHSHSHGDHRMGDVEFKDRPDTVVVGWTAPEVAAFFKIDDWPRDIVKFDLGG
                     RVLDVIPTPGHHPAHIMLFDERTRLLLSGDTLYPGRLYVPADQFSAYRDSVDRVVVFT
                     "
     gene            complement(720..1808)
                     /locus_tag="VHN39_11745"
     CDS             complement(720..1808)
                     /locus_tag="VHN39_11745"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2817063.1"
                     /translation="MPAKPSILIAGAGPTGLTAAVELTRRGFSPRIIDREAGPTSLSN
                     AVGISPRSLDLLEAGGVTERLLAKGLKIRRVQARFDAELLGVISLERLPHRFNFLLSL
                     PQHDTECLMEETLRGLGGQVDWGVELTALRLADGEVEVDLTGPKGPQTARFDHVFGAD
                     GPHSRVREAAGIAFEGYVHKRLWSIADAIIPDWPYPPDQAAAILHRNGDVGFIIPIGP
                     SRYRTVSNTPETLGQIPGAESAKVLQADTFHLPIKQARTYQAGQVFLGGDAAHLHSPI
                     GARGMNLGIEDAAAFARRFAEDTLSGYTAERHPAARTWIALSERMLSAVQTDNPLAVP
                     LRNLAIRVISMLPALQQPMMRRVAGLRE"
BASE COUNT          294 a          580 c          691 g          299 t
ORIGIN      
        1 ggtgaagacc acgacgcgat cgacgctgtc gcggtaggcc gaaaactgat cggccgggac
       61 atagagccga cccggataga gggtgtcgcc ggagagcagc agccgggtcc gctcgtcgaa
      121 gagcatgatg tgcgcggggt ggtggccggg cgtcgggatg acgtcgagga cgcggccgcc
      181 caggtcgaac ttgacgatat cgcgcggcca gtcgtcgatc ttgaagaagg cggccacctc
      241 gggcgcggtc cagccgacca cgacagtgtc aggccggtcc ttgaactcca cgtcgcccat
      301 acggtggtcg ccatggctgt gggagtgagc gacgacgagc gggatcgagg ttcgatgatg
      361 cgccttcagc cagtcggcga tgacgccgtc gatcgtcggg cggatcttca ggccgccggc
      421 gcctgagtcc agcagcaggg cccggtcctt gccgaacagc agatagagaa agggcgcctc
      481 gaagttggtc ttcaccgact ggcggatgac gaaggtgtcg cgatcgtagc gctggacctg
      541 catcggaggc tcggcgacca ccgtcccgtc gatccagggc tggaagaggg gcttggcgag
      601 cgccattccc ggcagggtca ggacgagggc ggtcagcagc gttgcgagct tcatgcggtg
      661 ctccgacagg tttgggcgat cagtcccggg gagcggccgc gggtcaaggc ttgagccggc
      721 tattctcgca ggcccgcgac ccgccgcatc atcggctgct gcagcgccgg gagcatgctg
      781 atgacgcgga tcgccagatt gcggagcggg accgccagcg ggttatccgt ctggacagcg
      841 ctgagcatcc gttcgctgag ggcgatccag gttcgggccg ctgggtggcg ctcggcggtg
      901 tagccggaaa gcgtgtcctc ggcgaaacgg cgggcgaagg ccgccgcgtc ctcgatgccc
      961 aggttcatgc cccgcgcccc aatcggtgaa tgcaggtgag ccgcgtcgcc gccgaggaac
     1021 acctggcccg cctgataggt ccgcgcctgc ttgatcggca ggtggaaggt gtcggcctgc
     1081 agcactttgg cgctctccgc gcccgggatc tggcccaggg tttcgggtgt gttggagacc
     1141 gtgcggtagc ggctgggccc gatcgggatg atgaagccca cgtcgccatt gcggtgcaga
     1201 atcgcggcgg cctggtctgg cggataaggc cagtcgggga ttatggcgtc agcgatgctc
     1261 cagaggcgct tgtgaacgta gccctcgaag gcgatgcccg cggcttctcg cacccggctg
     1321 tgtgggccgt cggcgccaaa gacgtggtcg aaccgcgcgg tctgcggccc cttaggcccg
     1381 gtcaggtcga cctcaacctc gccgtccgcc aggcgcaggg cggtgagttc cacgccccag
     1441 tcaacctggc ctcccaggcc gcgcagggtc tcctccatga ggcactcggt gtcgtgctgc
     1501 ggcagggaga gcaggaagtt gaaccggtgt ggcaggcgct caaggctgat gacgcccagc
     1561 agttcggcgt cgaagcgcgc ctggacgcgg cgtatcttga gacccttcgc caacagccgt
     1621 tcggtgaccc cgccggcttc cagcaggtcg aggctgcggg gactaatgcc gacggcgttg
     1681 ctgagcgagg tagggcctgc ctcccggtcg atgatcctgg gcgagaaccc gcgccgcgtt
     1741 agctccaccg ccgcggtcag gccggtcggc cccgcaccgg cgatcaggat actgggcttg
     1801 gcgggcaagg gaacaagcct ccgtttcgtg ggcgctcggg aaacgtccgg gtcccgccgg
     1861 agtt
//
LOCUS       DATAJL010000609         6530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68668,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000609 DATAJL010000000
VERSION     DATAJL010000609.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6530
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68668"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1207)
                     /locus_tag="VHN39_11750"
     CDS             complement(<1..1207)
                     /locus_tag="VHN39_11750"
                     /inference="COORDINATES: protein motif:HMM:NF014215.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2817064.1"
                     /translation="MRAHLARLLRGGVLAVALPALAMAQPRGPISLGGGGPEVAAIDP
                     ATMQGLPSARDYRPPEGIGFKATDFISENVRLTAQWFYASETEGRKLPTVIIAPGWGA
                     TAANLRQDAVDLARAGYRVMLFDYRGWGDSDGRVMLTNHRPAAGGPAAGGTFTAEVHE
                     LRGYIDPWEQVEDWLNAISYAVTDPMVDAGRIGVLGSDLSGGHVVQVAAQDPRVKALV
                     SQVSVADTRPYKPYQPDPAKVIAEANAAASRIATGQAPYPADRARAPSAQGGALVGAP
                     VGAKVVRWAPVEQANQVTAPALFVLAEKEELFSNTNNGQLACERVQGPRKMVMLPKIT
                     HYGVYGAERERAVTAAIDWFDRYLKPPKLEPGGGPIRAPVNRKDPERGACNPPPLSPA
                     GEEKKDGSGE"
     gene            complement(1228..1836)
                     /locus_tag="VHN39_11755"
     CDS             complement(1228..1836)
                     /locus_tag="VHN39_11755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817065.1"
                     /translation="MSFTDLFIGILFLFLILVAALMLMHQEAVQREQVETQTQSEQIR
                     QMQAKLDAAPKPVPEQPAFRLGIVFNIYQRPGVFDGSGWTYSRTVRVFRSPDGHCINT
                     VWMRSNLSTAWKPSTAKEDIPTDAQQDLLGKFESCGLSASGDHWESTSETGKLTRISP
                     DLYSGYAVLHKKEGDERLEMQYRVLGIYDDYFRKPSSVVQPG"
     gene            complement(1899..2837)
                     /locus_tag="VHN39_11760"
     CDS             complement(1899..2837)
                     /locus_tag="VHN39_11760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817066.1"
                     /translation="MDIARLFASSSFLYVYSGLLISLTVVAIVRNHISITAETKVSRE
                     IARLVDAAHSLDAAGKVVQLLLLNESTGARILTHDACRQDDLGDHKVWRNPKSATARA
                     AANYLGVMAAVPAGRHSLEGLRPARTMLEDEYRRLHKGLSGFSDFIIRVALLGTFMGL
                     IAALTIASANIGAAQGSAAAQSAHMRDFIQVLLATAANKFWISAVGIGCALIVQIYRS
                     GSERAQHIVRLGDAFDRALTDRDIAAAWCPPDASLASQEEGDLRFVREAIFDRISKLD
                     LEPLNQAIAETAAAIKANAKDSVISFGPALPRRSGE"
     gene            complement(3603..4244)
                     /locus_tag="VHN39_11765"
     CDS             complement(3603..4244)
                     /locus_tag="VHN39_11765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817067.1"
                     /translation="MQISSAAPSPLAPAQAVSASQIAPGSTSPLATLQGQASTVLDTS
                     GKVSDADKLDAYTSAQRLSVTGQYAGVGQAGAALLNQIANSPTAQKVETQRAGYADAM
                     MGAIQRAGAAGVPRAQALGAASLQHFDGLSGTDQKALLASINAPNRAGVTPFAGLDDW
                     RGQMAAMGKVSAPVDRIELSGAARAVAVASTPAAPAAPAQPAYVTGSITNVRV"
     gene            4824..>6530
                     /locus_tag="VHN39_11770"
     CDS             4824..>6530
                     /locus_tag="VHN39_11770"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX2817068.1"
                     /translation="MPEHESRLRSRLARLASSSIDTTAHMTLDKRGWVRAQQIAAFKQ
                     LLPGVAAANCANAVLLLLIFWSTPHRAFLLVWTVIISIAASLPLLRSLVRHRAEPAVR
                     SERAIWKVTRDSSILAVGWVVMLIYVFPHANVGQQMTIAVVAVGMMCGGAFMLSTVEP
                     AALVFSGLICLGGAAVLCIDGKPIFKILALLLLSYFAVLAYGIRWISRLFVRQLLSRA
                     EAKEKSELIGLLLHDFEQASSDWLWHLDEQGQIVEPSPRFASAFGMAKGDLEGCNLVD
                     ILRSGPEREALRAAIEARRPFRNLQVPIDTVAGERWLSFAGQSSPGLGGAGRARGVAS
                     DVTAEQHAQRRLEEALRDYETLAGSLADVIYRTDIEGVCNYVSPGCEAMLGYHPEELI
                     GRTRSHIDHAENDVTSLMGALGRMGADPSRSEILISRVRHKDGRWLWVQSNLKLTVER
                     GAVVGCIDIMRDVTEQVAAEAALTAAKLEAESANRAKAEFLANVSHEIRTPMNGILSA
                     LHLLGREPISAEGRELMRHADDSGRMLSQLLNDVLDFSKIEAGQLDLSPEPMNVGEAL
                     EGV"
BASE COUNT         1045 a         2126 c         2174 g         1185 t
ORIGIN      
        1 cctcgccgct gccgtccttc ttctcctcgc ccgccggcga caggggcggt gggttgcacg
       61 ccccgcgctc ggggtccttg cggttgacgg gtgctcggat cggcccgccg cccggctcca
      121 gtttgggggg cttcaggtag cggtcaaacc agtcgatggc ggccgtgacc gcccgctccc
      181 gctcggcgcc gtagacgcca tagtgggtga tcttgggcag catcaccatc ttgcgcggcc
      241 cctgcacccg ctcgcaggcg agttggccgt tgttggtgtt ggagaacagc tcctcctttt
      301 ccgccaggac gaacagcgcc ggcgcggtca cctggttcgc ctgttccacc ggcgcccagc
      361 gcaccacctt ggcgcccacc ggtgcgccga ccagggcgcc gccctgggcg ctcggggcgc
      421 gcgctcggtc ggccggatat ggcgcctggc cggtggcgat gcgcgaggct gcggcgttgg
      481 cctccgcgat caccttggcg gggtccggct gatagggctt gtaggggcgg gtatccgcaa
      541 cgctgacctg gctgaccagc gccttgaccc tcgggtcttg cgccgcgact tggacgacgt
      601 ggccgccgga aaggtcggag ccgaggacgc cgatgcggcc ggcgtcgacc atcggatcgg
      661 tcacggcata gctgatggcg ttgagccagt cctcaacctg ctcccaggga tcgatatagc
      721 cgcggagctc atgcacctct gccgtgaacg tccctcccgc ggcgggccct cccgcggcgg
      781 gccggtggtt cgtgagcatc acccggccgt cgctgtcgcc ccacccccgg tagtcgaaca
      841 gcatgacccg gtagccggcg cgcgccaggt cgacggcgtc ctggcgcaaa ttcgcggccg
      901 tggcgcccca gccgggcgcg atgatgaccg tgggcagctt ccggccttcg gtctcggagg
      961 catagaacca ttgggccgtc aggcgcacgt tctcgctgat gaagtcggtg gccttgaagc
     1021 cgatcccctc gggcggacgg tagtcgcgcg ccgagggcaa gccctgcatc gtggcggggt
     1081 cgatggccgc gacctcagga ccgccgccgc cgaggcttat cggcccccga ggctgcgcca
     1141 ttgcgagggc gggcaaggcg acggcgagca cgccaccgcg gagcaatcgt gcgagatggg
     1201 ctctcatggc gttctcggcg accaccgcta gccgggttgc actacagaag agggtttccg
     1261 aaaatagtcg tcgtagatac ccaatactct atactgcatc tctagacgtt catccccttc
     1321 cttcttatga agcacggcgt acccagaata cagatccggg gatatccgcg tcagtttacc
     1381 cgtctccgag gtcgactccc aatggtcgcc tgaggcggag agcccgcagg actcgaactt
     1441 cccgagaaga tcttgctgcg cgtcggtggg aatgtcctcc ttcgctgtcg acggcttcca
     1501 cgccgtgctc agattgctcc gcatccagac ggtgttgatg cagtgcccgt cgggcgagcg
     1561 gaaaacccga accgtgcggg aataggtcca gcccgaacca tcgaacacac ccggtctctg
     1621 gtagatgttg aagacgatgc ccagccggaa cgccggctgt tcgggcacgg gtttgggggc
     1681 cgcatcgagc ttggcctgca tctgccggat ctgctcggac tgcgtctggg tctcgacctg
     1741 ttccctttga acggcctcct ggtgcatcag catgagcgcg gccaccagga tcaggaaaag
     1801 aaacaggatc ccgatgaaaa ggtcggtgaa cgacacgaac ggtccttcat cgcccgccag
     1861 ctccgtgggc ccggcgcgtc gccgcaaccg tccaggcatc attccccgct ccgtcgcggc
     1921 aatgccggtc caaatgagat gacggagtcc ttcgcgttgg ccttgatggc cgcggccgtc
     1981 tcggcgatcg cctggttgag aggctccaga tccagcttcg atatccgatc gaagatggcc
     2041 tccctcacga acctgaggtc gccctcctcc tggctggcca ggctggcgtc cggcgggcac
     2101 caggcggcgg cgatgtcgcg atcggtgagc gcccggtcga aggcgtctcc caggcgcacg
     2161 atgtgctgag ctctctccga gccggagcga tagatctgca cgatcaaggc gcaaccgatg
     2221 cccaccgcgg agatccagaa tttgttggcg gccgtcgcca gcagcacctg gatgaagtcg
     2281 cgcatgtgag cgctttgcgc ggcggccgat ccctgcgcgg cgccgatgtt cgcgctggcg
     2341 atcgtcagcg cggcgataag gcccatgaat gtgccgagca gcgccacgcg gatgatgaag
     2401 tcgctaaagc cgctcaggcc cttgtgaagc cgccggtact cgtcctccag catcgtcctt
     2461 gcgggacgca ggccttcaag actgtggcgt cccgcgggca cggccgccat cacgcccaga
     2521 tagttggcgg ccgccctcgc ggtcgcggat ttggggtttc gccagacctt gtggtcccca
     2581 aggtcgtcct ggcggcaggc gtcatgggtg aggatgcggg cgcccgtgga ctcgttcaac
     2641 aacaggagct gcacgacctt gccggcggca tccagggaat gggcggcgtc gacaagcctg
     2701 gcgatctcgc gcgagacctt ggtttccgcg gtgatcgaga tgtgatttcg gacaatcgca
     2761 acgaccgtca gtgaaatcag aagtccggaa taaacgtaaa gaaatgagct ggatgcaaat
     2821 aacctagcaa tatccacgaa gacttccccc aatcgcgccg cgctgtgttc ggttggcccc
     2881 ccatccgtcc gcgttcagct accttgggcg gacctgccgg acgtccgcaa ggggtcggaa
     2941 gcggtcgctg gcgtcgcggc gggactagga caccgtccgg tgagccgcga atgtcctgtt
     3001 tgtggcgcgg ccgcaatatc ttcgacgggc gcactgcgga cccgcagcaa ggaccgcccc
     3061 tgactcatcg cggaccccgc gagggtccgc tttcgggctc tgagccaatg tctgctttcg
     3121 acccaaagcg gaccttcggc tcaagtttgt gcttgggatg tcaccagctt aagctcgcgc
     3181 gagggggcgt cacgatgact gagcgacacc ttgtcgagac ggcgtatcgt ggcgagcgtt
     3241 gccttggtca gtggtgggtc gaagatggcc aactgcacgt ggaaaacgag tttggctcgt
     3301 tgagcggatc gccggttgga cggaatcccc gggcgattgc ccttccttcg gaggccgccg
     3361 aaaggcttct ctggcagctc ttgcgaaagc aggaccccaa tcgcccgttc ttctcgtggg
     3421 gttagcactc tagctgcgag gtccgcttgc cccccgaacc agccgttccc aaggtccgct
     3481 ttgtggacgg cctcgtgatg accgcttcga cccacagcgg acttcaatct tgcgaagtga
     3541 tcctatgtcg ccgtcctggg gtgcggcggg tcccacgatg cgcggcctcg tcgccgcgcc
     3601 gctcacaccc ggacgttggt gattgatccg gtgacatagg caggctgcgc cggggcagct
     3661 ggcgccgcgg gcgtgctcgc gaccgccacg gcgcgggccg cgccggaaag ctcgatgcgg
     3721 tcgaccgggg cggagacctt gcccatggcg gccatctggc cgcgccaatc gtcgaggccg
     3781 gcgaagggcg tcaccccggc tcggttgggg gcgttgatgc tggcgagcag cgccttctga
     3841 tccgtccccg agagaccgtc gaagtgctgc agggacgccg cccccagcgc ctgggcgcgc
     3901 ggaacgccgg ctgcgccggc ccgctggatg gcgcccatca tggcgtcggc gtagccagcc
     3961 cgttgggttt ccaccttctg ggccgtcgga gaattggcga tctggttcag gagggcggcg
     4021 cccgcctggc cgacacccgc atactggccc gtgacgctga gccgctgagc actcgtgtag
     4081 gcgtcgagct tgtcggcgtc ggagaccttg ccggaggtgt cgagcaccgt cgacgcctgc
     4141 ccctgcaggg tggcgagcgg gctcgtcgaa cctggtgcaa tctggcttgc cgataccgcc
     4201 tgggcagggg ccaggggcga cggcgccgct gaggaaattt gcatctggcc gcaacactac
     4261 gcggccgcgg attaagattg tcctgagcgg cctgcgacgc ctcgcctcag gccaaggtgc
     4321 gtcgggaccg gctcatggcc ggcgcggtcc acgcacacga aggccaccag ggccacccgt
     4381 tcgcgccaca tgtcgccgct gccgggcgct ggtcgcggcc tgaacatcag gcctgacatc
     4441 gacgcaccgc cggtcttcgg attggcggca tgtctgatgc ggccctaaac cccgatcggc
     4501 tcccaacgac ggctttcccc cgtggcggac ttcaggcagg tccgcttgcg ggcgcggagc
     4561 cttctggacc cgcccggtgt gaaactgcgc gtttcgctag aggacaaggc cgccagcgga
     4621 ggcggcgatc acgtggtcca gcctcataga catctctcgc cgatctcctg gagctagcga
     4681 aggccctgaa tgtggctgcg cagtctggtg cctgcgttcc tccactcatt ctcggcgatg
     4741 taaggcaata gaaagggtat tccggtagga ggcggttcga gggccgcgac gtcgggtttg
     4801 ccggttttcc accgcgaggc cggatgccgg aacacgagag cagattgcgt tcgcggctcg
     4861 cgcgcctcgc gagttcgtcg atcgatacga cggcccacat gacactggac aagcgggggt
     4921 gggtccgcgc gcagcagatc gctgccttta aacagctcct tcccggagtc gccgcagcaa
     4981 actgcgccaa tgccgtactc ttacttttga tcttttggag tacgccccac cgcgccttcc
     5041 ttctcgtttg gaccgtcatc atctcgatcg cggcgtcatt gcctctcctc cgatcactcg
     5101 ttcgccatcg ggcggagccg gcggtccgca gcgagcgagc gatctggaag gtgacgcgcg
     5161 attctagcat cctggcggta ggctgggtcg taatgctcat ttacgtcttc ccgcacgcca
     5221 atgtcggaca gcagatgact attgcggtcg tggcggttgg catgatgtgc ggcggagcct
     5281 tcatgctgtc tacagtcgaa ccggcggcgt tagtcttctc tggattgatc tgcctgggcg
     5341 gcgcggctgt actgtgcatc gatggcaaac cgatcttcaa aatccttgca ttgctgcttc
     5401 tcagctactt cgccgtgctg gcgtacggca taagatggat ctccagactc ttcgtgaggc
     5461 agttgctttc ccgtgccgag gccaaggaga aatctgaact catcggcttg ctattacacg
     5521 acttcgaaca agcctcctcg gactggcttt ggcacttgga tgagcaaggt cagatcgtcg
     5581 aaccttcgcc acgcttcgcc tctgccttcg gcatggcgaa aggtgacctt gagggctgta
     5641 acctcgtcga catcctgcgg agtgggccgg agcgcgaggc gctcagagcc gccatagagg
     5701 cccgccgccc attccgtaat cttcaggtgc cgatcgatac ggtggcgggc gagcgctggc
     5761 tttcgtttgc tggtcagtcg agccccggcc ttggaggcgc cggacgggcg agaggcgtcg
     5821 cgtcggacgt caccgccgag cagcatgccc agcggcggtt ggaggaggcc cttcgcgact
     5881 atgagaccct ggcgggcagt ctcgctgacg tgatctaccg caccgatatc gaaggtgttt
     5941 gcaactacgt ctccccgggc tgcgaagcga tgcttgggta ccatccagaa gagctgatcg
     6001 ggcgcacgcg ctcccatatc gaccacgcgg agaacgatgt cacgagcctg atgggcgccc
     6061 tgggtcggat gggggccgac ccctcccggt cggagatcct gatctcgcgc gtgcgccaca
     6121 aggacggccg ctggctgtgg gtgcagtcca atctcaagct gacggtggag cgaggcgcgg
     6181 ttgtcggatg catcgacatc atgcgcgacg tgaccgaaca ggtggccgcc gaggccgccc
     6241 tgaccgcggc caagctcgag gcggagtccg ccaaccgcgc caaggccgag ttcctggcca
     6301 acgtcagcca cgagatccgc accccgatga acggcatcct gagcgccctc cacctcctcg
     6361 gacgcgagcc gatctccgcg gaggggcgcg agttgatgcg ccatgctgac gacagcgggc
     6421 gcatgctgtc gcaactgctg aacgacgtgc tcgacttttc caagatcgag gccggccagc
     6481 tcgacctgtc gcccgagccg atgaacgtgg gcgaggcgct ggagggggtc
//
LOCUS       DATAJL010000610         1817 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36586,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000610 DATAJL010000000
VERSION     DATAJL010000610.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36586"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VHN39_11775"
     CDS             complement(<1..398)
                     /locus_tag="VHN39_11775"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX2817069.1"
                     /translation="MTESRFEETPPQPGPQPWSDGPPPAPDGQPVHEPVFNAPWQAVA
                     VVVLIVGGYAVQTLFPVDAILAAYAFSPANLVPGRWETLITSIFLHGSWSHAMMNGAF
                     ALAFSTPLARLFGPKVEGALLFFAFYVLAGV"
     gene            515..>1817
                     /locus_tag="VHN39_11780"
     CDS             515..>1817
                     /locus_tag="VHN39_11780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEX2817070.1"
                     /translation="MIRSLRAGVALAAVLSLTTSSFARAIELPHLPKISLGGGEPKLE
                     KLAPGEWPQARSDVRADPDTRFGSLPNGMRYAIHRQAIPPGQAALRLRFDAGSLMETD
                     AQAGLAHFLEHMAFNGSKAVPEGEMVKILERHGLAFGADTNASTNFDETVYKLDLPKT
                     DDDTVDTSLKLLREVASELTIAPDAVDRERGVVLSEERASDSPAYHVFKERLGFQLPG
                     QRMPTRHPIGKVEVLQKAPASLIVDFYHHYYRPERATLVVVGDFDPTAMEAKIKAKFG
                     DWKAAGPAGPDPDLGKVKARKTEAKLVVQPGTALNLQIIWVRPPDLRADRLAKRREDL
                     VEQLGFSVLNRRLSALTRSPHPPFLGAAAFKADQGHSAEVTTLALAAQADGWREGLAA
                     LDQEERRAARYGVRQDELDREIAEVRASAQNAVAGAATRRPA"
BASE COUNT          293 a          687 c          588 g          249 t
ORIGIN      
        1 acgccggcca gcacatagaa ggcgaagaac agcagtgcgc cctcgacctt cggcccgaac
       61 aaccgcgcga gcggggtgga gaaggccagc gcgaaggcgc cgttcatcat cgcgtgcgac
      121 cagctgccgt gcaggaagat cgaggtgatc agcgtctccc agcgccccgg gaccaggttg
      181 gccggcgaaa aggcgtaggc cgccaggatc gcatccaccg ggaacagggt ctgcaccgcg
      241 tagcccccga cgatcaggac gacgaccgcc acggcctgcc acggcgcatt gaacaccggc
      301 tcgtgcacgg gctggccgtc cggcgcgggt ggcggcccgt cggaccacgg ctgggggcca
      361 ggctgtggcg gggtctcttc gaagcgcgat tcagtcatct cgtccattta ggctgtttgt
      421 cgcagatgtg cgacaccgcc cccttcttgc cttgccgccg ccacttggct tggcgatggt
      481 gcgccacctt gtcgaacccc ttcaggacat ttctatgatc cgttccctgc gcgcgggcgt
      541 ggcgctcgcc gccgtcctct ccctgacgac ctccagtttc gcccgggcga tcgagctgcc
      601 gcatttgcca aagatcagcc tgggcggggg cgagcccaag ctggagaagc tcgcgcccgg
      661 cgaatggccg caggcccgct ccgacgtccg cgccgacccc gacacgcgct tcggctctct
      721 gcccaacggc atgcgctacg ccatccaccg ccaggcgatc ccgcccggcc aggcggcgct
      781 gcgcctgcgc ttcgacgcgg gctcgctgat ggagaccgac gcgcaggccg gcctcgccca
      841 cttcctggag cacatggcct tcaacggctc caaggccgtg cccgaaggcg agatggtcaa
      901 gatcctggag cgtcacggcc tggccttcgg cgccgacacc aacgcctcca ccaacttcga
      961 cgagaccgtc tacaagctcg acctgccgaa gaccgacgac gacaccgtcg acacttcgct
     1021 gaagctgctc cgcgaggtgg cctcggagct gaccatcgca cccgacgccg tcgaccgcga
     1081 gcgcggggtg gtgctgtccg aggagcgcgc cagcgacagc ccggcctatc acgtgttcaa
     1141 agagcgcctg ggcttccagc tgcccggcca gcgcatgccg acccgccatc cgatcggcaa
     1201 ggtcgaggtg ctgcaaaaag cgcccgccag cctgatcgtc gacttctacc atcactacta
     1261 ccggcccgag cgggcgacat tggtcgtcgt gggcgacttc gatcccaccg ccatggaagc
     1321 caagatcaag gcgaagttcg gggactggaa ggctgcgggc ccggctggcc ccgaccccga
     1381 cctcggcaag gtcaaggcgc gcaaaaccga agccaagctg gtcgtccagc cgggcacggc
     1441 gctcaacctg cagatcatct gggtccgccc cccggatctg cgcgccgacc gcctggccaa
     1501 gcgccgcgaa gacctggtcg aacagctggg cttctcggtc ctcaaccgcc gcctctccgc
     1561 cctcacccgc tcgccgcacc cgcccttcct gggcgccgcg gccttcaagg ccgatcaggg
     1621 ccactccgcc gaggtgacca ccctggcgct cgccgcccag gcggacggct ggcgcgaggg
     1681 cctggcggcg ctcgatcagg aggagcgccg cgccgcgcgc tacggcgtgc gccaggacga
     1741 gctcgaccgc gagatcgccg aggtccgcgc ctcggcccag aacgccgtgg ctggcgcggc
     1801 cacccgccgc ccggccc
//
LOCUS       DATAJL010000611         4488 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_23316,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000611 DATAJL010000000
VERSION     DATAJL010000611.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4488)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4488)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4488
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23316"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..610)
                     /locus_tag="VHN39_11785"
     CDS             complement(<1..610)
                     /locus_tag="VHN39_11785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817071.1"
                     /translation="MVVTWRVGVASASGSAAYATYLQGETLKHEHEAAARYYAGEISP
                     RPAPGAEFSDALTAPVGTVAELRPDLSPAFAGRLGIADPSRPLITGEIASLMNNQRAD
                     GGNIEGRKKHSAHRAVAEVFGLDPRTLPSIEMIENVLAGRRADGDAPRAGTGNGERLS
                     AKVVESSLRKFKAAIGVPADRETTADEIARVAMGRIDVAGYLK"
     gene            complement(620..808)
                     /locus_tag="VHN39_11790"
     CDS             complement(620..808)
                     /locus_tag="VHN39_11790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817072.1"
                     /translation="MAESVDEAKQHLRHAREVQRERAAAFWQRAIDEGRILRQSGAQM
                     RKETREERAEERSASQTP"
     gene            complement(817..2565)
                     /locus_tag="VHN39_11795"
     CDS             complement(817..2565)
                     /locus_tag="VHN39_11795"
                     /inference="COORDINATES: protein motif:HMM:NF014581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEX2817073.1"
                     /translation="MNQAGRNGLAVLAGALATVAIPCAWLALASDIYCAGIGRLDLFV
                     FPFTQWLQVAPYWRLNWWMTLWVVVSATAPPFVAGLAVFARVRRRANGRRLVAAPGGG
                     VKAIKPGVTDNHGHAAWATAKQLARRFAGPGCLIGAATPGGSLRFDVITSGPTHSMIF
                     AGPGSHKTTSAVTRIWHWSGPRVVFDPSCEIGPIMTGALEAKGFNVTSIGLNGQGIDA
                     LDWIDPTHPEADAHIRSVVDWIYNESATTPNAQGHARDPFWPTWGRALVTCLAAHMLF
                     SDQPDFRKTLAALRQGLATPEAEMQAMLTAIHAHSCSRMASELAGGLMGMKAAQTFSG
                     IYGNAFAATEWLSVGAYADVVSGSAMRTSDILDSNTVVFIQLPLRTLLATPAVSRAVM
                     GAFFNAMFHADAVGIAERILFQIDEAWILGAMKEIKLCHTTARKYRGTISTIWQSEGQ
                     MEGVWGQDDAKLMRDTVSWRSYNAIQDGAVAEKLSRDIGEHGILAYSEGDNQGRQKPW
                     GLALPSRSRGTNVNVHEIRRRLIKADEIMRAPADEMFVLVRDFAQPIRCFSAPYFRYP
                     DIARSMSDSRFNPAAE"
     gene            complement(2565..4049)
                     /locus_tag="VHN39_11800"
     CDS             complement(2565..4049)
                     /locus_tag="VHN39_11800"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX2817074.1"
                     /translation="MSVAASQIVDQSGQPVRLDCIAWWPGYANPNQMMLTIVAAGFNC
                     VRISYFNATLSSDLAAIDQAVQQAAAVSVRVIINNHANEGEGNCNSQQANGLPFDSGP
                     GTNNTDGCGATGTVTATKWVSDWVRVATRYKGNDAVSGYDLWNEPLEIPGGSTWGDGS
                     VSDLRALYQQAGNAIQAVDSDKLIICEGPILWAPLYQADLSHVASAPVVLNRPNKVVY
                     SVHEYPSDIGGEPNDSGDAYVQQMNQAFGYLITQNIAPVWVGELGASLDGTAGSNLAD
                     EQAWAATIVPYLNGTTPGGLKIPAGGQGLGTDWWALTSCPSNCGGPDGALESDMTTLK
                     QQQAAIYSQFVQAPLAGASRSGATSASFSAQTAIVSATAFPASTVAAKDAQVTAAIQA
                     TLPAAPSTPTPTAAVPAAIGQTQTNGQMTGTDTALTSAAPGQTTSTASQSAATALQDI
                     VTGDALARQAEAAVQTNAPAATSAALIKQAQAALQAALAAQGGN"
BASE COUNT          695 a         1507 c         1492 g          794 t
ORIGIN      
        1 gtttcaggta gccggcaacg tcgatccgtc ccatggccac ccgggcgatc tcatccgctg
       61 tcgtctcgcg gtcagccggc acgccgatcg ccgccttgaa cttccgcaat gaactctcga
      121 ccactttggc cgatagccgc tcgccattgc cggtcccggc ccgcggtgcg tcaccatccg
      181 cccgcctgcc cgccaggacg ttctcgatca tctcgatcga cggcaaggtc ctcgggtcca
      241 gcccgaacac ctccgccacc gcacgatgcg ccgagtgctt cttgcgtccc tcgatgttgc
      301 cgccgtcggc ccgctgattg ttcatcaggc tggcgatctc gcccgtgatc agcggacgcg
      361 atgggtcggc tattcccagc cgcccggcga aggccggcga gagatccggg cgcagctcgg
      421 ccacggtgcc aacgggcgcc gtcaaggcat cggaaaattc cgcccccggt gccggccgcg
      481 gtgaaatctc gcccgcgtag tagcgcgccg cggcttcgtg ctcatgcttc agcgtctcgc
      541 cctgcagata ggtggcgtac gccgcgctgc cggaggcaga cgccacgccg acgcgccagg
      601 tcacgaccat cggtctcgct cagggcgtct ggcttgcgga ccgctcctct gccctctcct
      661 cgcgcgtctc cttgcgcatc tgcgcgcccg attgtctgag gatgcggccc tcgtcgatcg
      721 ccctttgcca gaacgccgcc gcacgttccc gctggacctc acgcgcgtgg cgcaaatgct
      781 gttttgcttc atcaacgctt tcggccatgg ctgtcctcac tctgctgccg gattgaaccg
      841 gctatcgctc atcgagcggg cgatgtccgg ataacgaaaa tagggcgccg agaaacatcg
      901 gatcggctgc gcgaaatcgc ggaccaggac gaacatctca tccgctggcg cacgcatgat
      961 ctcatcggcc ttgatcagcc gccggcggat ctcgtggacg ttcacgttgg tgccgcgcga
     1021 gcgcgacggc agcgccagcc cccatggttt ctggcggccc tgattgtcgc cctcgctata
     1081 cgcgagaatg ccgtgctcgc cgatatcgcg cgacagcttc tcggcgaccg ccccatcctg
     1141 gatggcattg taggaccgcc aggacaccgt atcacgcatc agcttggcgt cgtcctgtcc
     1201 ccagacgcct tccatctgac cttcggattg ccagatggtg gagatcgtgc cgcgatactt
     1261 ccttgccgtg gtgtggcaga gcttgatttc cttcatcgcg cccaggatcc aggcctcgtc
     1321 gatctggaac agaatccgct ccgcgatgcc gaccgcatcg gcgtggaaca tggcgttgaa
     1381 gaacgcgccc atgacggcgc ggctgaccgc gggtgtggcc agcaatgtcc gcagcggcag
     1441 ttggatgaac accacggtgt tgctgtccag gatgtcggac gtgcgcatgg cagaccccga
     1501 gacgacatcg gcataggcgc cgacggacag ccattcggtt gcggcaaagg cgttgccgta
     1561 gataccggag aacgtctgtg ccgccttcat gcccatcaag ccgccggcga gttcgctggc
     1621 catgcggctg cacgaatgcg catggatggc ggtcagcatc gcctgcatct cggcttccgg
     1681 cgtggcaagg ccttgccgga gggccgccag cgtcttgcgg aaatccggct ggtcgctgaa
     1741 cagcatgtgc gcggcgaggc aggtgacgag cgcgcggccc caggtcggcc agaacggatc
     1801 gcgggcgtgt ccctgcgcgt tcggcgtcgt cgcgctctcg ttgtagatcc agtcgacaac
     1861 ggagcgaata tgcgcgtccg cctcggggtg cgtggggtcg atccagtcca gggcgtcgat
     1921 cccctggcca ttcagtccga tggatgtgac gttgaagcct ttggcttcca gcgcgccggt
     1981 catgatcggg ccaatttcgc aggacggatc gaacacgacg cgcgggccgc tccagtgcca
     2041 gatccgggtc acggcagagg tcgtcttgtg gctcccggga ccggcaaaga tcatcgaatg
     2101 cgtcggcccg gacgttatca cgtcgaaccg gagggagccg cccggggtcg ccgccccgat
     2161 gaggcagcca ggtcccgcaa accgacgggc gagctgcttc gcggttgccc atgccgcgtg
     2221 gccgtgattg tcagtcacgc ctggcttgat cgccttcaca ccgccgcccg gcgccgccac
     2281 caggcggcgg ccattggccc ggcggcgcac ccgggcgaac accgccaaac cggccacgaa
     2341 cggcggggct gtggcggata cgacgaccca cagcgtcatc caccagttca gccgccagta
     2401 gggcgccacc tgaagccatt gcgtgaacgg gaacacgaac agatcgagcc gaccgatgcc
     2461 ggcgcaataa atatccgagg cgagggccag ccacgcacag gggatggcca cggtcgccag
     2521 tgcgcccgcc agaacggcga gcccgttgcg accggcctgg ttcatcaatt cccaccctgc
     2581 gcggccagtg ccgcctggag cgccgcctgg gcttgcttga tcagggcagc ggacgtggct
     2641 gccggcgcat tcgtttgcac cgccgcctcg gcctgtcggg caagcgcgtc gccggtgacg
     2701 atgtcctgca acgcggtggc cgcggactgg gaggccgtgg atgtcgtctg tcccggcgca
     2761 gcggatgtca gggcggtatc cgttcccgtc atctggccat tggtttgcgt ttgcccgatc
     2821 gcggccggaa cggcagccgt cggtgtcggc gtggatgggg cggccggcaa ggtggcctgg
     2881 atggcagcgg tcacctgggc gtcctttgcc gcgacggttg acgcagggaa ggcggtcgcg
     2941 gacacgatgg cggtctgcgc cgagaacgaa gctgacgtgg cacctgaacg cgatgcgccc
     3001 gccagcggcg cctggacgaa ttggctgtaa atcgccgcct gctgctgctt cagcgtggtc
     3061 atgtcgctct caagtgcgcc gtccggaccg ccgcagttcg aggggcagga cgtgagcgcc
     3121 caccagtctg ttcccaaccc ctgtccgccg gccgggatct tcagaccacc cggggtggtg
     3181 ccgttcaggt aaggcacgat ggttgctgcc caggcttgct cgtccgccag attggagccg
     3241 gccgtgccgt ccaggctggc gccaagctcg cccacccaga ccggcgcgat gttctgtgtg
     3301 atcaggtagc cgaacgcctg gttcatctgc tgcacgtaag cgtcgccgct gtcgttcggc
     3361 tcgccgccga tatcggacgg atattcatgc accgagtaga cgaccttgtt cggccggttc
     3421 agcaccacgg gcgcgctcgc cacatgggac agatccgcct ggtagagcgg cgcccagaga
     3481 atgggtccct cgcagatgat cagcttgtca ctgtcgaccg cctggatggc gttgccggct
     3541 tgctgataga gcgcgcgcag atcgctcaca ctgccgtcgc cccaggtcga cccgccggga
     3601 atttccagcg gctcgttcca caaatcgtag ccgctcaccg cgtcgttgcc cttgtagcgg
     3661 gttgcgacgc gcacccaatc cgacacccat ttcgtcgcgg tcaccgtacc cgtggcaccg
     3721 cagccgtcgg tgttgtttgt tccgggtccg ctgtcgaacg gcagcccatt ggcctgctgt
     3781 gaattgcagt tgccctcgcc ctcgttggcg tggttgttaa tgatgacccg cacactgaca
     3841 gccgccgcct gctggacggc ctgatcgatc gccgccaggt ccgaactgag ggtggcgttg
     3901 aaatagctga tgcgaacgca attgaagcca gccgcaacga tcgtgagcat catctggttc
     3961 ggatttgcgt agccgggcca ccacgcgatg cagtcaagcc gcaccggttg tcccgactga
     4021 tcgacgatct ggctggcggc gacggacaac gggccacacg gaaggattgt ctgcacggag
     4081 gggatgctgg cgcagacaga agccgcggtc ggcgcagcgg gtggatcggt cgcggtcgcg
     4141 gggtccgcga cgggcgcatt cgcagtcggg acgggcatgg cggctgttgc ggcccgggcc
     4201 gttgcctgcg aggggctcgc cgcaggtaag ggtgtcgagg ttacggcacc cgccgcattg
     4261 acggcggcgg gcgtgcccgc ccgggctgac gaggcggtgc tggcgacagt tgccggcgct
     4321 gtggcgccgc tctggagttg ctctgtaagc cagcccagag gtgtgccgag accggcgccg
     4381 gcactgtagc ccgccgaccc cgcccacgtg ccgtgtccgg caccctggat caggtccaaa
     4441 ctgaagttgg cgcatccgga cagccttgtg cggtgtgccc ttgatggc
//
LOCUS       DATAJL010000612         1672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68686,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000612 DATAJL010000000
VERSION     DATAJL010000612.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68686"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..535
                     /locus_tag="VHN39_11805"
     CDS             <1..535
                     /locus_tag="VHN39_11805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6504 family protein"
                     /protein_id="HEX2817075.1"
                     /translation="AYAVEPISGRQARLDRGREATVEEGLAPLVDRLTNRLGEDRVWR
                     AAPVESHVPELSVGRIRPFSRLPDAKPWDRETPRPTRLFHRPEPVDSVIALTPDDPPT
                     QFRWRGQLHRVRRAEGPERIGEEWWKGGIEDVQVGHVRDYYRVEDAEGARFWLFRAGL
                     YDDPRTPPKWWLHGLFG"
     gene            532..>1672
                     /locus_tag="VHN39_11810"
     CDS             532..>1672
                     /locus_tag="VHN39_11810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEX2817076.1"
                     /translation="MTRYAELQAASNFSFLRGASHPWELVVGADALGLEAIGVCDRNS
                     LAGVVRAWSARKDLTQNGSKIRDLTGCRLDFIDGTPSLLVYPSDREAYGRLTRLLTVG
                     QRAAKKGECELRWADFTDHAEGQLVLVVPPDRLDGTFERDLGRIAGELSGNVWLAAAR
                     RYGARDLQRLSRLSTLAQTTRAPMVATNDVLCHAPERRALQDVLTCIRETCTIAEAGL
                     RLEANAERHLKSPDEMARLFAKFPGAVERSAEIAERIGFDLGQLRYEYPDEPVPPGKT
                     AIQHLRDLSWAGADWRYPDGVPDKVKKLVAYELDLIEKLDFPNYFLTVHDIVRHARDK
                     LKILCQGRGSAANSCVCFCLGITAVDPTKEDQDLLFSRFISENRGE"
BASE COUNT          247 a          609 c          574 g          242 t
ORIGIN      
        1 ggcctatgcc gtggagccga tctccgggcg ccaggccagg ctggaccggg gccgcgaggc
       61 caccgtcgag gagggcctgg cccccctcgt cgaccggctg accaaccgcc tgggcgagga
      121 ccgcgtctgg cgcgccgcgc cggtggaaag ccatgtgccg gagttgtcgg tgggccgcat
      181 ccggcccttc agcaggctgc ccgacgccaa gccctgggac cgcgagacgc cgcgcccgac
      241 ccgcctcttc caccgtcccg agccggtgga tagcgtgatc gcgctcaccc ccgacgatcc
      301 cccgacccag ttccgctggc gcggccagct gcatcgcgtg cgccgggccg agggtccgga
      361 gcggatcggc gaggaatggt ggaagggcgg aatcgaggac gtccaggtcg gccacgtccg
      421 cgactactac cgcgtggagg acgccgaggg cgcgcgcttc tggctgttcc gcgccggcct
      481 ctatgacgac cccaggactc cgcccaagtg gtggctgcac gggctgttcg gatgacccgc
      541 tacgccgagc tgcaggccgc cagcaacttc tcgttcctgc gcggggcctc gcacccctgg
      601 gagctggtgg tgggcgccga tgcgctgggc ctggaggcga tcggcgtctg cgatcgcaat
      661 tcgctggccg gcgtggtgcg ggcctggtcg gcgcggaagg acctgacgca gaacggctcg
      721 aagatccgcg acctcaccgg ctgccggctg gacttcatcg acgggacgcc gagcctgctg
      781 gtctatccct ccgaccgcga ggcctatgga cgcctcaccc gcctgctcac cgtgggccag
      841 cgggcggcga agaagggcga gtgcgagctc cgctgggccg acttcacgga ccacgccgag
      901 ggccagctcg tgctggtcgt cccgcccgac cgcctggacg ggaccttcga gcgcgacctt
      961 gggcgcatcg ccggcgagct gtccggaaac gtctggctgg cggcggccag gcgctacggc
     1021 gcgcgcgacc ttcagcggct ctcgcggcta tcgacgctcg cccagacgac gcgcgcgccg
     1081 atggtcgcca ccaatgacgt cctctgccac gcgcccgagc ggcgggccct gcaggacgtg
     1141 ctcacctgca tccgcgagac ctgcacgatc gccgaggcgg ggctgcggct tgaggccaac
     1201 gccgaacgcc acctgaaatc ccccgacgag atggcgcgtc tgttcgccaa atttcccggc
     1261 gcggtggagc gcagcgccga gatcgccgag cggatcggct tcgacctcgg ccagctccgc
     1321 tacgaatacc ccgacgagcc ggtgccgccg ggcaagaccg ccatccagca cctgcgcgac
     1381 ctctcctggg ccggcgccga ctggcgctat ccggacggcg tgccggacaa ggtcaaaaag
     1441 cttgtcgcct atgaactcga cctgatcgag aagctcgatt tccccaacta cttcctgacc
     1501 gtccacgaca tcgtccgcca tgcgcgcgac aagctgaaga ttctctgcca ggggcgcggc
     1561 tcggcggcca attcctgcgt ctgcttctgc ctggggatca ccgcggtcga tcccaccaag
     1621 gaggaccagg acttgctgtt ctcgcggttc atttccgaga accgcggcga gc
//
LOCUS       DATAJL010000613         3968 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_60557,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000613 DATAJL010000000
VERSION     DATAJL010000613.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3968
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60557"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..489
                     /locus_tag="VHN39_11815"
     CDS             <1..489
                     /locus_tag="VHN39_11815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817077.1"
                     /translation="PMLPLMYNNTYQIVQSKDEVAIDVEMVHDVRHIRLNAQHGPASM
                     KLWMGDSVGHWEGDTLVVETINMRPEQGLRGGSPNQKVTERFTRIGPNKLSYQFTVED
                     PTIYTAPFSGEVAMNTTKGQVYEYACHEGNYALTGMLAGARAEEKQAASAGSSSKGGG
                     GN"
     gene            complement(494..1510)
                     /locus_tag="VHN39_11820"
     CDS             complement(494..1510)
                     /locus_tag="VHN39_11820"
                     /inference="COORDINATES: protein motif:HMM:NF013044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2817078.1"
                     /translation="MLRVDLYCGEEALKVDRAQVLRRSWQFIGHEAMAPNAGDYLAEE
                     IGGAPVVVVRGAEGALAGFHNVCRHRAGALVADGQGSCGEAFVCRYHGWRYALDGRLR
                     SATDFGSAPGFDPRQYGLFPVRVESWRGLVFVNLDLDAAPLAEMLQPLAGGAPLPAFP
                     LVERRSHLLACNWKTYVENYLEGYHLPMVHPEFDEDVVVADYRVEIEGQVVFHSAPPR
                     GASVYAGTWAWLWPNLAINTYRHGYMIERMTAVGPEETRLDYFYFFDPARTDELAAMF
                     AVSDRVTAQDKQVCEEVQRNLRTGIYRGGVLSPKHEHGVAWFQARIAEAHGEPGPLTL
                     AAAS"
     gene            complement(1545..2873)
                     /locus_tag="VHN39_11825"
     CDS             complement(1545..2873)
                     /locus_tag="VHN39_11825"
                     /inference="COORDINATES: protein motif:HMM:NF024910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX2817079.1"
                     /translation="MAVADTNDLPPPPAVSAHHGSIGLIGATALVAGSMIGSGIYLLP
                     VTLGAIGSISILGWIAATTAALAVAGVFAWLAGVAPQAKGLPGYVEAGIGPFFGVQTA
                     VAYWTTCWVGTIAIALAVAGAAGYLVPALAPPGPRLLITLASIWLGVAAAWIGPGSVA
                     RVEGLTLTLGLLPVIVAATLGWFAFHPAIFLASWNPQGLSLPAAVGPSALNAFWAFLG
                     VECAAATAGVVRNPTRNVPRASLIGVAAVAVLYISACSVLMGILPATALARSSAPFAQ
                     AGQVTLGLGLASAIAVCALLRAQGCLTGWTLVISETSRSGADAGVFPPFFRTKPGERA
                     SAVNLLTAGGLMTLVAVATATPTLGQQFGVLANISVLLSLYAYSLAGGSLIRLSGSLT
                     PGRRLAARATAVFAIGCSLALMASAKPVELAFCLIPLGGAGLLYLWLRRR"
     gene            complement(2901..3308)
                     /locus_tag="VHN39_11830"
     CDS             complement(2901..3308)
                     /locus_tag="VHN39_11830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon domain-containing OB-fold protein"
                     /protein_id="HEX2817080.1"
                     /translation="MSEPQGNMSRPIPAPAVSIETKPFWDAAAEGRFLIKRCTDCRKA
                     FWYPRAMCPFCMSADTVWEESPGEGVIYTYSVMHRSPTGPYAIGYVTLNEGPAVLTNF
                     VDVASDGLAIGMKVRVKFQPTEGGPPAPVFAPA"
     gene            complement(3311..>3968)
                     /locus_tag="VHN39_11835"
     CDS             complement(3311..>3968)
                     /locus_tag="VHN39_11835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523792.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HEX2817081.1"
                     /translation="HHAQYNPHAMLKEVVTVEDVLSSRMISDPLHLLDCCVVTDGGGA
                     LIVTSPEVAKSLSRPKVRVMGAGEAPKGPRGGLDLDLTHSGAVWSGPRAFEEAGVTPA
                     DIKYASIYDSFTITVLMQIEDLGFCAKGDGGKFVSDGNLISGVGKLPFNTDGGGLCNN
                     HPTNRGGITKVIEAVRQLRGEAHPKVQVPNCDLAIAHGTGGSLGTRHAAATVIMEREG
                     "
BASE COUNT          672 a         1384 c         1364 g          548 t
ORIGIN      
        1 ccgatgctgc cattgatgta caacaacacc taccagatcg tgcagtccaa ggacgaggtc
       61 gccatcgacg tggagatggt ccacgacgtg cgccacatcc ggctcaacgc ccagcacggc
      121 ccggccagca tgaagctctg gatgggagac agcgtcggcc actgggaagg tgacaccctg
      181 gtggtcgaga ccatcaacat gcgcccagag cagggcctgc gcggcggctc gccaaaccag
      241 aaggtcaccg agcgcttcac ccgcatcggg ccgaacaagc tttcctacca gttcaccgtc
      301 gaggatccga ccatctacac cgccccgttc agcggcgagg tggccatgaa caccaccaag
      361 ggtcaggtct acgaatacgc ctgccacgag ggcaactatg cgctcaccgg catgctggct
      421 ggcgcccgag cggaggaaaa gcaggctgcg tcggccgggt cgtcctccaa gggcggcggc
      481 gggaactagc cgctcaggag gcagccgcca gcgtcaacgg cccgggctcg ccgtgggcct
      541 cggcgatacg cgcctggaac caggcgacgc cgtgctcgtg cttgggcgac agcaccccgc
      601 cgcgatagat gccggtccga aggtttcgct gcacctcctc gcagacctgc ttgtcctggg
      661 cggtgacccg gtcggagacc gcgaacatcg ccgccagttc atccgtccgc gccgggtcga
      721 agaagtagaa atagtccagc cgggtctcct ccggccccac ggcggtcatc cgctcgatca
      781 tgtagccatg gcggtaggtg ttgatggcga ggttcggcca gagccacgcc caggtcccgg
      841 cgtagacgct cgcgccgcgc ggcggggcgg aatggaagac gacctgacct tcgatctcga
      901 cccggtagtc ggcgaccacc acgtcctcgt cgaactccgg atgcaccatc ggcaggtgat
      961 agccctcgag gtagttctcg acgtaggtct tccagttgca ggccagcaga tggctgcggc
     1021 gctccaccag cggaaaggcc ggcagcgggg ccccgccggc caggggctgt agcatctcgg
     1081 ccaggggcgc ggcgtcgagg tcgaggttga cgaacaccag cccgcgccag ctctccaccc
     1141 tgaccgggaa gagcccgtac tgcctgggat cgaacccggg cgctgagccg aaatccgtgg
     1201 cgctgcgcag acgcccgtcc agcgcatagc gccagccgtg gtagcggcag acgaaggcct
     1261 cgccgcagct tccctggccg tcggccacca gagcgccggc ccgatgcctg cagacgttgt
     1321 ggaacccggc gagcgcgccc tcggcgccgc gcaccaccac caccggcgcg ccgccgatct
     1381 cttcggcgag atagtcgccg gcgttgggcg ccatggcctc atggccgatg aactgccacg
     1441 accgcctaag gacctgcgcg cggtcgacct tgagggcctc ttcgccgcaa tagagatcca
     1501 cgcgcagcat gacgcctcca gccggctgtt gtcggggcgg caagctagcg ccggcggagc
     1561 caaagataca gaaggcccgc gccgcccagc gggatcaggc agaaggccag ttcgaccggc
     1621 ttggccgacg ccatgagcgc gagactgcag ccgatggcga agaccgccgt ggcccgcgcc
     1681 gccagccggc ggccaggcgt gaggctcccg gacaggcgga tcagcgagcc tccggccaga
     1741 ctgtaggcat agaggctgag cagcaccgag atgttggcca ggacgccgaa ctgctggccg
     1801 agcgtcgggg tcgccgtggc cacggccacc agggtcatca gcccgccagc ggtcaagagg
     1861 ttgaccgccg aggcccgctc gccgggcttc gtgcggaaga acggcgggaa tacgccggcg
     1921 tccgcgccgc tgcggctggt ctcgctgatc accagggtcc agccggtgag gcagccctgg
     1981 gcccgcagca gcgcgcagac cgcgatggcg ctggcgaggc cgaggcccag ggtcacctga
     2041 cccgcctggg cgaagggcgc gctggacctg gcgagcgcgg tggccggcaa tatgcccatc
     2101 agcacgctgc atgcgctgat gtagaggacc gccaccgccg cgacgccgat caggctagcg
     2161 cgcggcacgt tgcgcgtggg attgcgcacc acgcccgccg tcgccgccgc gcactctacg
     2221 cccaggaagg cccagaaggc gttcagcgcc gaggggccga cggccgccgg caggctgagc
     2281 ccctgcgggt tccaggaggc gagaaagatc gccggatgga acgcgaacca gccgagcgtc
     2341 gcggcgacga tcaccggcag gaggccgagc gtcagcgtca ggccctccac ccgcgccacg
     2401 ctcccgggcc cgatccaggc tgcggccacg cccagccaga tcgaggcgag ggtgatgagg
     2461 agccgcgggc ccggcggcgc cagcgctggg accagatagc cggccgcgcc cgccacggcg
     2521 agcgcgatgg cgatggtgcc gacccagcag gtggtccagt aagccacggc ggtctggacg
     2581 ccaaagaacg ggccgatccc cgcttccaca tagccaggaa gccccttggc ctgaggcgcg
     2641 acgcccgcca gccaggcgaa cacgccggcg acggccaggg cggcggtggt ggccgcgatc
     2701 cagcccagga tcgagatgga tccgatcgcc cccagggtga ccgggaggag atagatgccc
     2761 gagccgatca tgctgccggc caccagcgcg gtcgccccga tgagcccgat cgagccgtga
     2821 tgcgccgaga ccgccggggg cggcggaagg tcgttggtgt cggctacggc catgtggtgt
     2881 ccccctggcc gacgcgcgca ctatgccggt gcgaacaccg gcgccggcgg tccgccttcg
     2941 gtcggttgga acttgaccct caccttcatg ccgatggcaa ggccgtccga cgccacgtcc
     3001 acgaagttgg tcagcaccgc ggggccttcg ttcagcgtca catagccgat ggcgtagggt
     3061 ccggtgggcg agcggtgcat gaccgaatag gtgtagatca ccccttcgcc cgggctctcc
     3121 tcccagaccg tgtcggccga catgcagaac gggcacatgg ccctggggta ccagaaggcc
     3181 ttgcggcaat ccgtgcagcg cttgatcagg aaccggccct cggcggccgc gtcccagaag
     3241 ggcttggtct cgatactgac ggcgggcgcc gggatcgggc ggctcatgtt cccttgaggc
     3301 tccgacatgc tcagccctcc ctttccatga tcacggtggc cgccgcgtgc cgggttccca
     3361 gcgacccgcc ggtcccgtgg gcgatggcca gatcgcagtt cggaacctgc accttcggat
     3421 gcgcctcgcc gcgcagctgg cgcaccgcct cgatcacctt ggtgatcccg ccgcggttgg
     3481 tggggtggtt gttgcaaagg ccgccgccgt cggtgttgaa cggtagcttg ccgacgccgg
     3541 agatcaggtt cccgtcggag acgaactttc caccgtcgcc cttcgcacag aaccccaggt
     3601 cttcgatctg catcaggacg gtgatggtga aactgtcgta gatcgaggcg tatttgatgt
     3661 ccgcgggcgt aacgccggcc tcctcgaagg ccctcggtcc ggaccagacg gcgcccgagt
     3721 gggtcaggtc cagatcaagc ccgccgcgcg ggcccttcgg cgcctcgcct gcgcccatca
     3781 cccgcacctt cgggcggctc aggctcttgg ccacctccgg cgaggtgacg atcagcgcgc
     3841 ccccgccatc ggtgaccacg cagcagtcca gcaaatgcaa tggatcggag atcatccgtg
     3901 aactgagcac atcctcgacg gtgacgacct ccttcagcat ggcgtgcggg ttgtattgcg
     3961 catggtgg
//
LOCUS       DATAJL010000614         1944 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10628,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000614 DATAJL010000000
VERSION     DATAJL010000614.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1944)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1944)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10628"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1127
                     /locus_tag="VHN39_11840"
     CDS             <1..1127
                     /locus_tag="VHN39_11840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2817082.1"
                     /translation="NYETVKTFGAEGRVGGGYDRAMGDYVDASVAANTSLNLLNGAQT
                     LIMQIGLAVMTVATGVWVVHGSLTVGGLYTATALLRNLYAPLGMLGFQYREIRQAFID
                     MEQMVSLRDVAPDISDAPDAVDLPPASGSGASIAFEKVGFQHDARSVGLKDVSFQTPP
                     GTTTALVGPSGAGKTTAVRLAMRLLDPKEGRVVIDGLDMRQVKQTALRQAVALVPQDV
                     ALFNESLYANIAFARPDAGIEEVRAAAEAAELGPFIDSLPNGMSTMVGERGLKLSGGE
                     RQRVGIARALLANPRVLILDEATSALDGPTEAAIQETLRKVKAGRTTLVIAHRLSTIV
                     DADQILVLRRGKIVERGTHAELLAKTGEYAALWRRQTREV"
     gene            complement(1124..1660)
                     /locus_tag="VHN39_11845"
     CDS             complement(1124..1660)
                     /locus_tag="VHN39_11845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817083.1"
                     /translation="MPGLTSRLAGPQDIPALEVVMAAAIAELQRGFLSPAQIEASRMI
                     MGLDRQLVSDGTYFIVEAEGRIAGCGGWSRRATLYGGDHTPGRDAAILDPSTDAARVR
                     AMYTHPDFARRGVGRRILELCEAAAGAEGFTRLELMGTMSGRPLYESYGFVAIEEILD
                     DRGGAPVPLVRMGKAIVG"
     gene            complement(1665..>1944)
                     /locus_tag="VHN39_11850"
     CDS             complement(1665..>1944)
                     /locus_tag="VHN39_11850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817084.1"
                     /translation="VVGLLPLMCQIHPNFHNGHIELKAPGSEWWVQLSGAVVWGLSFA
                     TVLTLALTPALLAAPKVMARRFGWLWRKLFGEPPAKPVKAYDIPRAAE"
BASE COUNT          302 a          691 c          681 g          270 t
ORIGIN      
        1 tcaactacga gacggtgaag accttcgggg ccgagggccg ggtgggcggc ggctatgacc
       61 gggccatggg cgactatgtc gatgccagcg tggcggccaa cacctcgctc aacctcttga
      121 acggcgccca gaccctgatc atgcagatcg gcctggccgt gatgaccgtg gcgacgggtg
      181 tctgggtcgt gcacggcagc ctgaccgtcg gcgggctgta tacggccacc gcgctcttgc
      241 ggaacctcta cgcgccgctc ggcatgctgg gcttccagta ccgcgagatc cggcaggcct
      301 ttatcgacat ggagcagatg gtctccctgc gcgacgtggc gcccgacatc tccgatgcgc
      361 cggacgccgt cgacctgccg ccggccagcg ggagcggggc gtccatcgcc ttcgagaagg
      421 tcggcttcca gcatgacgcc cgctcggtgg gcctcaagga cgtgagcttc cagacgccgc
      481 cagggacaac gacggcgctg gttggtccgt ccggggccgg caagaccacc gcggtccgcc
      541 tggccatgcg actgctggat cccaaggagg gccgcgtggt gatcgacggg ctggacatgc
      601 gccaggtgaa gcagaccgcg ctgcgccagg ccgtggccct ggtgccgcag gacgtcgccc
      661 tgttcaacga gagcctctat gccaacatcg ccttcgcccg gccggacgcc gggatcgagg
      721 aggttcgcgc cgccgccgag gccgccgagc tcgggccgtt catcgacagc ctgcccaacg
      781 gcatgtcgac catggtcggc gaacggggcc tgaagctctc cggcggcgag cgccagcggg
      841 tggggatcgc ccgggccctc ttggccaatc cccgcgtcct gatcctcgac gaggccacca
      901 gcgcgctgga cgggcccacc gaggccgcga tccaggagac cctgcgcaag gtgaaggccg
      961 gccgcaccac cctggtcatc gcccatcggc tttccaccat cgtcgacgcc gaccagatcc
     1021 tggtcctgcg ccggggcaag atcgtcgagc gcggaactca cgctgagctg ctggccaaga
     1081 cgggcgaata cgccgcgctc tggcgccggc agacgcggga agtctagccc acgatcgcct
     1141 tgcccatccg caccaacggc accggcgcgc cgccgcggtc gtcgaggatt tcctcgatgg
     1201 cgacgaagcc gtagctctcg tagagcggcc ggccggacat cgtgcccatc agctccagcc
     1261 gggtgaagcc ctcggcgcca gcggcggctt cgcacagctc caggatccgt cgcccgacgc
     1321 cgcggcgggc gaagtcggga tgggtgtaca tggcccgcac ccgggcggcg tccgtggagg
     1381 gatcgagtat ggcggcgtca cggcccggcg tgtggtcgcc gccgtagagc gtcgcccgcc
     1441 ggctccagcc gccgcacccc gcgatccggc cctccgcttc gacgatgaaa taggtcccgt
     1501 cggacaccag ttgacggtca aggcccatga tcatccggct ggcctcgatc tgggcggggg
     1561 acaggaaccc gcgctgcagc tcggcgatcg ccgcggccat cacgacttcc agggccggga
     1621 tatcctgcgg ccccgccagg cgggacgtca gaccgggcat gcgtctactc ggcggcccgg
     1681 gggatgtcgt aggccttgac gggcttggcc ggcggctcgc cgaacagctt gcgccacagc
     1741 cagccgaacc ggcgcgccat caccttcggc gcggcgagca gggccggcgt cagggcgagc
     1801 gtcaggacgg tggcgaagga caggccccag accacggcgc cggagagctg cacccaccac
     1861 tccgaccccg gcgctttcaa ctcgatatgg ccgttgtgga agttcgggtg gatctggcac
     1921 atcagcggca gcaggcccac gacg
//
LOCUS       DATAJL010000615         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68689,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000615 DATAJL010000000
VERSION     DATAJL010000615.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68689"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /gene="secG"
                     /locus_tag="VHN39_11855"
     CDS             complement(<1..437)
                     /gene="secG"
                     /locus_tag="VHN39_11855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEX2817085.1"
                     /translation="MLIGILLTAQIIVSLALIGVVLLQRSEGGGFVGGGSPSGMMSVR
                     GAGDLLTRTTWILGAAFFTISLLLTILAGREKGASSVVDRLKIDAVDPALLNQKKPAQ
                     PPAGTAQPGGPQSAPSPLQAPAPTINNPFLSGAPSAPAPTAPP"
     gene            588..1127
                     /locus_tag="VHN39_11860"
     CDS             588..1127
                     /locus_tag="VHN39_11860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817086.1"
                     /translation="MSSDASFLPILETERMRLTPLVADDTQYIFPLMADAEVMAFWDI
                     GEIDDPDVIANLIAGQVEEMADGRALYWTMRSLSDAQFIGTCDLSEIDRRHRRAEVGF
                     MLGREAWGQGYASEAMQAVLSYAATQGLRRLLARTHLGNRRSESLLAKLGFEEEGMLR
                     GHVLRDGERRDCRLFGLLL"
     gene            1152..>1549
                     /locus_tag="VHN39_11865"
     CDS             1152..>1549
                     /locus_tag="VHN39_11865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817087.1"
                     /translation="MNPISVTGFDHIVLRIADKAAMLDFYEGVLGLSVDRDRPELGLT
                     HIRAGQQMIDLVTLDGPLGKMGGAGPGAEGRNLDHFALQVRPFDEAAIRAHLAAHGVA
                     VVEEGPRYGADGDGFSLYIRDPEGNTVELKG"
BASE COUNT          260 a          518 c          539 g          232 t
ORIGIN      
        1 tgcggcggtg cggtgggcgc aggcgcgctc ggggcgccgc tcaggaacgg gttgttgatg
       61 gtgggcgcag gcgcctgcag cggcgacggc gcgctctgcg gaccgccggg ctgggcggtg
      121 ccggccggcg gctgggccgg cttcttctga ttgagcaggg ccggatcgac cgcatcgatc
      181 ttcagccggt cgacgactga ggaggcgccc ttttcgcggc cggccaggat agtcaggagc
      241 aggctgatgg tgaagaaggc cgcgcccagg atccaggtgg tccgggtcag gaggtcgcca
      301 gcgccgcgca ccgacatcat gcccgacgga ctgccgccgc cgacaaagcc gccgccttcc
      361 gaacgttgca gcagcacgac cccgatcagg gccaggctga cgatgatctg ggcggtgagc
      421 aggatgccaa tcagcatagg tcttcaaagt ccggtatgtt cgagccgaca caaccttcgc
      481 cgaaatgaag ggcggcccgc cgaaatgaag cgcgggctct atcaccgagc ccgccccaag
      541 gccatagcta gggcgtcgca gcccccagac aaccgttcca accacagatg agctcagacg
      601 cgtccttcct gccgatcctg gaaaccgagc ggatgcggct gacgccgctg gtggcggacg
      661 acacgcaata catctttccg ctgatggccg acgccgaggt catggccttc tgggacatcg
      721 gcgaaatcga cgatcccgat gtgatcgcca atctgatcgc gggccaggtc gaggagatgg
      781 ccgatggccg cgccctctac tggacgatgc gaagcctcag cgacgctcag ttcatcggaa
      841 cctgcgacct ctccgagatc gaccggcgcc atcgccgcgc cgaggtgggg ttcatgctgg
      901 ggcgcgaggc ctggggccag ggctacgcct cggaggccat gcaggcggtg ttgtcctatg
      961 cggccacgca agggctgcgc cggctgctcg cccgcaccca cctcggcaac cgccgctcgg
     1021 agagcctgct ggcgaaactg ggcttcgagg aagagggcat gctgcgcggc cacgtcctgc
     1081 gcgacggtga gcgccgagac tgccgcctct tcgggctttt gctctagggc ccgggcgcct
     1141 atttccagcc catgaacccg atcagcgtca ccggcttcga ccacatcgtc ctgcggatcg
     1201 ctgacaaagc cgccatgctg gacttctatg aaggggtgct cggcctgagc gtcgaccgcg
     1261 accggccgga actcggcctc acccatatcc gagcgggcca acagatgatc gacctggtga
     1321 ccctggacgg cccgctcggg aagatgggcg gcgcaggccc gggcgccgag gggcgcaacc
     1381 tcgaccattt cgcactgcag gtccggccct tcgacgaggc ggcgatccgg gcccacctgg
     1441 ccgcccatgg cgtggcggtc gtggaggagg gcccgcgcta cggcgccgat ggcgatggct
     1501 tttcgctcta catccgcgac ccggagggca acaccgtcga gctcaaggg
//
LOCUS       DATAJL010000616         1707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10631,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000616 DATAJL010000000
VERSION     DATAJL010000616.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10631"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VHN39_11870"
     CDS             complement(<1..497)
                     /locus_tag="VHN39_11870"
                     /inference="COORDINATES: protein motif:HMM:NF015078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817088.1"
                     /translation="MAVDGAVTARGVVTPQPLPAATRNRILTYVGVLMLLVGLGSPAQ
                     GLIDLPISFLLKNKLHLQSHEVANFRLVASIPLYLSFLFGFARDRWNLFGRKDRGLLM
                     VFGSLCAGTYGFFAFAPATYPVLLAAVLLCSVAFSFVFAAQNGLSAQVGQQHVMSGQI
                     SVVWN"
     gene            complement(506..1564)
                     /locus_tag="VHN39_11875"
     CDS             complement(506..1564)
                     /locus_tag="VHN39_11875"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2817089.1"
                     /translation="MDLKTGKTLWNTVILPEPLKPSHKNSAGVMQQGPAGGAIWSAPT
                     VDAKRGLVYVATGDSYTDVDTKGADAIVAIDTKTGKIRWSNQVEEKDNFIVGCTDAVK
                     PVNCPSPDGPDYDFGASPIIFHLAAKKGEKGGKDVLLAGQKSGVVFGMNPDTGKTLWS
                     RKVGGGSSLGGIEWGMAADLKRLYVANADTVNLIDEYLRPLGKSPVAIKEPPSSPGLY
                     AIDPATGKLLWSVPAPKAACHYAGDRGRDRSGGACIRAESQAPSVMPGVVFSGTMDGW
                     FRAYATATGKILWADSTTDRSYDTVNQVKGQPGGSMDGLGAAIAGGRVFVMSGFNGAA
                     NTGGNGTNVLLAYSVDGK"
     gene            1496..>1707
                     /locus_tag="VHN39_11880"
     CDS             1496..>1707
                     /locus_tag="VHN39_11880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817090.1"
                     /translation="MARFQRLRQDDGVPKRLAGLQVQRGERTRTVRAFDAQTGKELWR
                     SAPLHANPVVGITGSPVVSGDQVFVPL"
BASE COUNT          271 a          572 c          592 g          272 t
ORIGIN      
        1 atgttccaga ccacgctgat ctggcccgac atcacgtgct gctggcccac ctgggcggaa
       61 aggccgttct gggcggcgaa gacgaaggaa aacgccaccg agcagagcag gactgcggcc
      121 aacaggacag ggtaggtggc cggcgcgaag gcgaagaaac cgtaggtccc cgcacagagc
      181 gagccgaaca ccatcaggag gcctcggtcc ttgcggccaa acaggttcca gcggtcgcgg
      241 gcgaagccga acaggaagga cagatagagc gggatcgagg cgaccaggcg gaagttcgcc
      301 acctcatgcg actgcagatg cagcttgttc ttcaacagga agctgatcgg caggtcgatc
      361 aggccctggg ccggcgaccc caatccgacc agcaacatca ggaccccgac gtaggtcagg
      421 atccggttgc gggtcgcggc cggcaggggc tggggcgtca cgaccccgcg ggccgtgacg
      481 gcgccgtcga cggccacggc gcgccctact tgccgtcgac cgaataggcc agcagcacgt
      541 tggtcccatt gccgccggtg ttggccgcgc cgttgaagcc gctcatcacg aagacccggc
      601 ctccggcgat ggccgcgccc aggccgtcca tgctgccgcc tggctggccc ttcacctggt
      661 tgacggtgtc gtagctgcga tcggtggtgc tatcggccca gaggatcttg ccggtggcgg
      721 tggcgtaggc gcggaaccag ccgtccatgg tgccggagaa caccacgccc ggcatgaccg
      781 agggggcctg ggactcggcg cggatgcagg cgccgccgga acggtcgcgg ccccggtcac
      841 ccgcgtagtg gcaggccgcc ttgggcgccg gcacgctcca cagcagcttt ccggtagccg
      901 gatcgatggc gtagaggccc ggactggacg gcggctcctt gatggccacc ggcgacttgc
      961 cgagcgggcg cagatactcg tcgatcagat tcacggtgtc ggcgttggcg acgtagagtc
     1021 gcttcaggtc cgcggccatg ccccactcga tgccgcccag cgatgagccg ccaccgacct
     1081 tgcggctcca cagggtcttg ccggtgtcgg ggttcatgcc gaacactacg cccgacttct
     1141 ggccggccag cagcacatcc ttgccgccct tctcgccttt cttggccgcc agatggaaga
     1201 tgatcggcga ggcgccgaag tcatagtccg ggccgtcggg actggggcag ttcaccggct
     1261 tcaccgcgtc ggtgcagccg acgatgaagt tgtccttttc ctcgacctgg ttggaccagc
     1321 ggatcttgcc ggtcttggtg tcgatggcga cgatggcgtc ggcgcccttg gtgtccacgt
     1381 cggtgtagct gtcgccggtg gcgacgtaga cgaggccgcg cttggcgtcg accgtcggcg
     1441 ccgaccagat ggcgccgccc gccggaccct gctgcatgac cccggccgag ttcttgtggc
     1501 tcggtttcag cggctcaggc aggatgacgg tgttccaaag cgtcttgccg gtcttcaggt
     1561 ccagcgcggc gagcgcaccc gcacggtccg cgccttcgac gcccagaccg gcaaggagct
     1621 ctggcgctcg gcgcccctgc acgccaatcc ggtggtcggc atcaccggct cgccggtggt
     1681 ctccggcgac caggtcttcg tgccact
//
LOCUS       DATAJL010000617         6492 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68696,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000617 DATAJL010000000
VERSION     DATAJL010000617.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6492
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68696"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..850
                     /locus_tag="VHN39_11885"
     CDS             <1..850
                     /locus_tag="VHN39_11885"
                     /inference="COORDINATES: protein motif:HMM:NF025214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817091.1"
                     /translation="DMLIELGGSTHMNRLDVMAFRPAPKQASWLGYPHSAGLSTIDYL
                     ITDPYNTPPRRDLLVEEPLMMPHSWIALGRMIFNDAHVITPGLPEDRAGLITFGTANN
                     PHKYNREMFAVWSQVLRGAPGSRFMFIRPEGGSATFRHNVLAEFERGGIAPERIVFSN
                     VRGAHMPFYNDVDISLDTFPLTGGTTTTEALWMGVPVVSLIGEAFFERLSGSILANCG
                     LADLTTGDKGEFVRLAVALAADKPRRMALRETLRNRMKSGPLGQTEQFAQDFYDLIAR
                     TVRPQG"
     gene            complement(856..1509)
                     /locus_tag="VHN39_11890"
     CDS             complement(856..1509)
                     /locus_tag="VHN39_11890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817092.1"
                     /translation="MKLRDHTRASLLAYTVAQCAAVVPDGREAAFRAAVDAHLDETLE
                     RLHVCINGCSPWRLDEFNVLQSSQHTIYLYYLAHTIWTRSGDTAAPTRLFLMNKAFNG
                     IDLFYEIAMPPIFYIGHSVGIVLAKATYGNHLVLYQGVTVGRHKDQIPVIGDRVVLYP
                     GSAVAAGSVIGDDVVISQGVRVINRTVPDGMIAFAGEGGDLVLRPRPDDLLAEYFRL"
     gene            complement(1506..2315)
                     /locus_tag="VHN39_11895"
     CDS             complement(1506..2315)
                     /locus_tag="VHN39_11895"
                     /inference="COORDINATES: protein motif:HMM:NF013530.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2817093.1"
                     /translation="MTGLATILGATGFVGRRLQARLAVEGWDVFAPAKGDKSLFGRDM
                     GVVFYCAGLTADFDRRPFDTVEAHVTLVSELAQAGRFEQLIYLSSTRLYDSQAAEVLD
                     ETAPLIFDPADPRRTYDLSKALGENITLTRTEGRGAVARLSNVFDWEPEAPGFLSEWL
                     IEAARTRDLHLDSSPHIARDYIHLDDVVDSLIAMAEKPAAGTVNVASGALVANGEIAN
                     LFLEAGWHVVFSRDVSPAPPPRADIARLRALGVAPRAVKDVVSRYLESLTA"
     gene            complement(2312..2821)
                     /locus_tag="VHN39_11900"
     CDS             complement(2312..2821)
                     /locus_tag="VHN39_11900"
                     /inference="COORDINATES: protein motif:HMM:NF012360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HEX2817094.1"
                     /translation="MTIRIDPTAKVSPLADIEDSIRGTLIEIGARTVIDAFVKIKPAG
                     GMGDVVIGADCAINSGTVIYTGNGVRIGDAVAIAANCTLAPTNHAVADTTRRIRDQGF
                     QPSKGGIVIEEDAWLGANVVVLDGAVIRRGAVIAAGSVVRGEVPAYEIHAGAPSRRIG
                     RRGSEVGGD"
     gene            complement(2818..3360)
                     /locus_tag="VHN39_11905"
     CDS             complement(2818..3360)
                     /locus_tag="VHN39_11905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEX2817095.1"
                     /translation="MRFAETTIPGVVVVDIEPRQDERGAFARLQCAAEFAAAGHPFIP
                     AQTSLSRNPTAGTLRGMHYQPAPHAETKFVRVVRGRMFDVALDLRPDSPTYRQWIAQE
                     LSADNGRALLVPEGVAHGFLTLEADTDVLYQISPAFQPGHEAGVRWDDPAFGIAWPTQ
                     PALISPRDATYPDLTAGERQ"
     gene            complement(3377..4615)
                     /locus_tag="VHN39_11910"
     CDS             complement(3377..4615)
                     /locus_tag="VHN39_11910"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2817096.1"
                     /translation="MTAPLCRFCKTPLTHTFLDLGRQPLANSYLTAEQLAAGTEQAYP
                     LHVRVCHKCFLVQADDAVPADAIFDDAYAYFSSYSTSWVEHARRYAGAMAERFGLGPE
                     SLVVEVASNDGYLLQHFLALDIPVLGVEPTANTAAAAVARGVPTEVAFFGEATGAMLA
                     ARGQRADLMAANNVLAHVPDIADFVAGFREVLKDEGVLTFEFPHLLNLLEKVQFDTIY
                     HEHYSYLSLLAVEQVLRANGLRPFDIERLSTHGGSLRLFCCHMGSGHEETEALAALRD
                     EEHAAGLDRIETYAGFAPRVEAVRDSFRAFLAAEKTAGRRLAAYGAAAKGNTFLNYCT
                     TTTDDIVAVFDASLAKQGRFLPGSHLPILSPDAVRDLRPDDLVILPWNLKDEIMGQMA
                     FIRDWGGRFVTASPETKVIG"
     gene            complement(4612..5673)
                     /gene="rfbG"
                     /locus_tag="VHN39_11915"
     CDS             complement(4612..5673)
                     /gene="rfbG"
                     /locus_tag="VHN39_11915"
                     /EC_number="4.2.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047733 - CDP-glucose 4,6-dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glucose 4,6-dehydratase"
                     /protein_id="HEX2817097.1"
                     /translation="MATLDPGFWRGKRVLLTGHTGFKGAWAAIWLADLGAEVTGLALA
                     PDQDPSLFDLAAVEGLVRSLIVDLRDPVAVDVALSGKSFDLVLHMAAQPIVRAAIADP
                     VATFASNVMGTVHLLQALRAQAGLKAVLAITSDKVYANAETGRAFAEGDALGGKDPYS
                     ASKAATEMAVQSFAKSYFEPAGVPLATARGGNVIGGGDFSPDRIVADIVRAARAQEQV
                     VLRHPEATRPWQHVLDCVAGYLAYLQALASEPETPRAMNFGPRPGGRNVTVGELATLG
                     VEALGAQPWRHEADPHSIEARSLAIDAGLARRALGFESRLDAPAAVALTMDWYRRQAN
                     GEDALSLCRAQIAGYDTAP"
     gene            complement(5661..6428)
                     /gene="rfbF"
                     /locus_tag="VHN39_11920"
     CDS             complement(5661..6428)
                     /gene="rfbF"
                     /locus_tag="VHN39_11920"
                     /EC_number="2.7.7.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047343 - glucose-1-phosphate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate cytidylyltransferase"
                     /protein_id="HEX2817098.1"
                     /translation="MKTVILAGGLGTRISEESHLKPKPMIEIGGRPILWHIMKLYSHY
                     GFNDFIVCLGYKGYVVKEYFANYVLHNADLTVDLAKGVTEYHATKHEPWRVTLVDTGE
                     TTMTGGRVKRVAPYLDKDEPFFLTYGDGVADVDLAALAAFHKSNGKAATVTAVAPPGR
                     YGALEIKDGLVRRFIEKPPGDNGLINGGFFVLQPSVLDRITGDETIFEQGPLEGLAHD
                     GQLAAFPHDGFWAAMDTLRDKNNLEALWASGEAPWRR"
BASE COUNT         1038 a         2193 c         2254 g         1007 t
ORIGIN      
        1 cgacatgctg atcgaactcg gcggctcgac ccatatgaac cggctggacg tgatggcctt
       61 ccgtccggcg ccgaagcagg cgagctggct gggctatccg cactcggcgg gcctgtcgac
      121 gatcgattat ctgatcaccg atccctacaa caccccgccg cgccgcgacc tgctggtcga
      181 agagccgctg atgatgccgc acagctggat cgcgctcggc cggatgatct tcaacgacgc
      241 ccatgtgatc accccgggcc tgccggaaga ccgcgccggc ctcatcacct tcggtacggc
      301 caacaatccg cacaagtaca atcgcgagat gttcgcggtc tggtcgcagg tgctccgcgg
      361 ggcgccagga tcgcggttca tgttcatccg gccggagggc ggctcggcga ccttccgcca
      421 caatgtgctg gccgagttcg agcggggcgg catcgccccc gaacggatcg tcttcagcaa
      481 cgtgcgcggc gcccacatgc cgttctacaa cgacgtcgac attagcctcg acaccttccc
      541 gctgaccggc ggcaccacca cgacggaggc cctgtggatg ggcgtgccgg tggtaagcct
      601 gatcggcgag gccttcttcg aacggctgag cggctcgatc ctggccaact gcgggctggc
      661 ggatctgacc accggggaca agggcgagtt cgtgcgcctg gcggtcgcgc tcgccgccga
      721 caagccccga cgcatggcgc tgcgcgaaac cctgcgcaac agaatgaagt ccgggccgct
      781 cggccagacc gaacagttcg cccaggactt ctacgacctg atcgcgcgca ccgtgcggcc
      841 gcagggctga ggccgctaga gccggaagta ttcggccagg aggtcgtcgg ggcggggccg
      901 cagcaccagg tcgccgccct cgccggcgaa ggcgatcatg ccgtcaggca cggtgcggtt
      961 gatcacccgc accccttgcg agatcaccac gtcgtcgccg atcaccgagc cggcggcgac
     1021 agcgctgccg ggatagagca cgacccggtc gccgatcacc ggaatctggt ccttgtgccg
     1081 ccccaccgtc acgccctggt agagcaccag gtggtttccg taagtggcct tggccagcac
     1141 gatgccgacg ctgtggccga tgtaaaagat cggcggcatg gcgatctcat agaagaggtc
     1201 gatgccattg aaggccttgt tcatcaggaa gagccgggtg ggcgcggcgg tgtccccgga
     1261 ccgggtccag atcgtatggg ccaggtagta gagatagatg gtgtgctgcg aggactgcag
     1321 cacgttgaac tcgtccagcc gccaggggga gcagccgttg atgcagacgt gcagccgctc
     1381 cagcgtctcg tccaggtgtg cgtccaccgc cgcccggaac gccgcctcgc gcccgtcggg
     1441 gacgacagcc gcgcactggg cgacggtgta ggcgagcagg cttgctcggg tgtggtccct
     1501 cagcttcacg cggtcaggct ttccaggtag cggctgacca catccttgac cgcccgcggc
     1561 gcgacgccaa gcgccctcag gcgagcgatg tcggcgcgcg gcggcggggc gggcgagacg
     1621 tcgcgggaga agaccacatg ccagccagcc tccaggaaga ggttggcgat ctcgccattg
     1681 gcgaccagcg cgccactggc cacattgacc gttccggcgg ccggcttctc ggccatggcg
     1741 atcagcgagt ccacgacgtc gtcgagatgg atgtagtcgc gggcgatgtg cggactggag
     1801 tccaggtgca ggtcgcgcgt gcgggcggcc tcgatcagcc attcggagag gaagcccggc
     1861 gcctccggct cccagtcgaa gacgttggag agcctggcca ccgcgcctcg gccctcggtg
     1921 cgcgtgagcg tgatgttctc gcccagcgcc ttggagagat cataggtgcg gcgcggatcg
     1981 gccgggtcga agatcagggg cgcggtctcg tccagcacct cggccgcctg actgtcgtag
     2041 agccgcgtcg aggagaggta gatcagctgt tcgaagcggc cggcctgggc cagttcgctg
     2101 accagcgtca cgtgcgcctc gacggtgtcg aagggccggc ggtcgaagtc ggcggtgagg
     2161 cccgcgcaat agaacaccac ccccatgtcg cggccgaaca gcgacttgtc gcccttggca
     2221 ggcgcgaaga cgtcccagcc ctcgacggcc aggcgggcct gcaggcgacg gccgacgaag
     2281 ccggtcgcgc ccaggatggt ggccaggccg gtcaatcgcc ccccacttcg ctacctcgcc
     2341 gcccgatacg gcgcgacggc gcgccggcat ggatctcata ggccggcacc tcgccgcgga
     2401 ccaccgagcc ggccgcgatc accgcgcccc tacggatgac ggcgccgtcc aggaccacga
     2461 cattggcgcc cagccaggcg tcctcctcga tgacgatccc gcccttcgac ggctggaagc
     2521 cctggtcgcg gatgcggcgc gtggtgtcgg ccacggcatg gttggtgggg gccagcgtgc
     2581 agttggcggc gatcgccacc gcgtcgccga tccgcacccc gttgccggtg tagatcaccg
     2641 tgccggagtt gatggcgcag tcggcgccga tgaccacgtc gcccatgccg ccggccggct
     2701 tgatcttcac gaaggcgtcg atgaccgtgc gggcgccgat ctcgatcagc gtcccgcgga
     2761 tcgaatcctc gatgtccgcc agcggcgaga ccttggccgt cgggtcgatc ctgatcgtca
     2821 ctggcgttcc cccgccgtca ggtcagggta ggtcgcgtcg cggggtgaga tcaatgccgg
     2881 ctgggtgggc caggcgatgc cgaaggccgg atcgtcccag cggacgccgg cctcatggcc
     2941 cggctggaag gccgggctga tctggtagag cacgtcggtg tcggcctcga gcgtcaggaa
     3001 gccgtgggcg acgccttcgg ggaccagcag ggcgcggccg ttgtccgccg aaagctcctg
     3061 ggcgatccac tggcgatagg tcgggctgtc cggccgcagg tctagcgcga cgtcgaacat
     3121 ccgcccacgg acgacccgga cgaacttggt ctcggcgtgg ggcgcgggct ggtagtgcat
     3181 gccgcgcagg gtcccggccg tcgggttgcg cgaaaggctg gtctgggccg ggatgaaggg
     3241 atggccggcg gcggcgaact cggccgcgca ctgcaggcgc gcgaaggccc cgcgctcgtc
     3301 ctggcgcggc tcgatgtcga cgaccacgac gccgggaatg gtcgtctccg cgaacctcat
     3361 cagcccccga cccttgtcat ccgatgacct tcgtctccgg cgaggcggtg acgaagcggc
     3421 cgccccagtc gcggatgaag gccatctggc ccatgatctc gtccttcagg ttccacggca
     3481 ggatcaccaa atcgtcgggc ctgaggtcgc gcaccgcatc gggactgagg atcggcaggt
     3541 ggcttcccgg caggaaacgg ccctgcttgg cgaggctcgc gtcgaacacc gcgacgatat
     3601 cgtccgtggt cgtcgtacag tagttgagga aggtgttgcc cttggccgcc gcgccatagg
     3661 ccgcgagcct gcggccggcc gtcttctccg ccgccaggaa cgcgcgaaag ctgtcgcgca
     3721 ccgcctcgac ccggggcgcg aagccggcat aggtttcgat ccggtcgagg ccggcggcgt
     3781 gctcctcgtc ccgcaaggcc gccagcgcct cggtttcctc atggcctgag cccatgtggc
     3841 agcagaagag ccgcagcgag ccgccgtgcg tggataatcg ttcgatatcg aacggtctca
     3901 ggccattggc ccgcaacacc tgctccaccg ccagcagcga caggtaggaa tagtgctcgt
     3961 gatagatggt gtcgaactgg actttctcca ggagattcaa caggtgcggg aactcgaagg
     4021 tcaagacgcc ctcgtccttc agcacctcgc ggaagcccgc cacgaagtcc gcgatgtcgg
     4081 gcacatgggc cagcacattg ttggccgcca tcaggtcggc gcgctgccca cgcgccgcca
     4141 gcatggctcc ggtggcctca ccgaagaagg cgacctcggt gggaacgccg cgagctacgg
     4201 ccgccgcagc ggtgttggcc gtgggctcga cgccgagcac ggggatgtcg agggcgagga
     4261 agtgctgcag cagatagccg tcgttgctgg ccacctcgac gacaagggat tccggcccca
     4321 gaccaaaccg ctcggccatg gcgccggcgt agcggcgcgc gtgctccacc cagctcgtcg
     4381 aataggagga gaaataggca taggcgtcgt cgaagatcgc gtcggccggg accgcgtcgt
     4441 cggcctgcac caggaagcac ttgtgacaga cgcgcacgtg caggggatag gcctgttccg
     4501 ttccagccgc gagctgctcg gcggtcagat agctgttggc cagcggctgg cggccgagat
     4561 ccaggaaggt gtgggtcaga ggcgtcttgc agaaacggca aaggggcgcg gtcatggggc
     4621 ggtgtcgtag cccgcgatct gggcccggca caaggagagc gcgtcctcac cgttcgcctg
     4681 gcggcggtac cagtccatgg tcagcgccac ggcggccggc gcgtcgagcc ggctctcgaa
     4741 gccgagcgcg cgcctggcga ggccagcgtc gatagcgagc gacctggctt cgatcgaatg
     4801 ggggtcggcc tcgtgacgcc atggctgcgc gcccagggcc tcgacgccga gcgtcgccag
     4861 ctcccccacc gtgacattcc gtccgccggg cctggggccg aagttcatgg cccgcggcgt
     4921 ctcaggctcg ctcgccagcg cctgaagata ggcgaggtag cccgccacgc agtccagcac
     4981 atgctgccag ggccgcgtcg cctcgggatg gcgcagcacc acctgctcct gggcccgcgc
     5041 ggcgcggacg atgtcggcca cgatccggtc gggcgagaag tcgcccccgc cgatgacatt
     5101 gccgccgcgg gccgtggcca gcgggacacc cgccggctcg aagtagctct tggcgaagct
     5161 ctggacggcc atctcggtcg cggccttgga ggcggaatag ggatccttgc cgccgagcgc
     5221 atcgccctcg gcgaaggccc ggccggtctc ggcgttggcg tagaccttgt ccgaggtgat
     5281 cgccagcacg gccttgagcc cggcctgggc ccgcagcgcc tgcagcagat gcaccgtccc
     5341 catcacattg ctggcgaagg tcgccaccgg atcggcgatc gccgcgcgta cgatcggctg
     5401 ggccgccata tgtagtacaa gatcgaacga cttgccggaa agcgccacgt cgacagcgac
     5461 gggatcacgc agatcgacga tcagcgaccg gaccaggccc tcaacggccg ccagatcgaa
     5521 gaggctggga tcctggtccg gcgccagcgc cagtcccgtc acctcggccc ccagatccgc
     5581 gagccagatc gccgcccaag cgcccttgaa cccggtgtgg ccagtgagca ggacccgttt
     5641 gccgcgccag aagccgggat ctagcgtcgc cacggggcct cgcccgaagc ccacagcgct
     5701 tccagattgt tcttgtcccg aagcgtgtcc atggccgccc agaacccgtc gtgcgggaag
     5761 gcggcgagct ggccgtcgtg cgccaggcct tcgagcgggc cctgttcgaa gatggtctcg
     5821 tcgccggtga tgcgatccag caccgagggc tggaggacga agaagccgcc gttgatcagg
     5881 ccgttgtcgc ccggcggttt ttcgatgaac cgccgcacca ggccgtcctt gatctccagc
     5941 gcgccatagc ggccgggcgg ggccacggcg gtcaccgtcg cggccttgcc gttgctcttg
     6001 tggaaggcgg ccagcgcggc gagatcgacg tcggcgacgc catcgccata ggtcaggaag
     6061 aagggctcgt ccttgtccag gtacggggct acccgcttga cccgcccgcc ggtcatggtg
     6121 gtctcgccgg tgtccaccag ggtgacgcgc cagggctcgt gcttggtggc gtggtattcg
     6181 gtgacgccct tggccaggtc gacggtcagg tcggcgttgt gcagcacgta gttggcgaaa
     6241 tactccttca ccacatagcc cttgtaccca aggcagacga tgaagtcgtt gaagccgtag
     6301 tgcgagtaga gcttcatgat gtgccacagg atcggccgcc cgccgatctc gatcatcggc
     6361 ttgggcttca ggtggctctc ttccgagatg cgcgtgccga ggccgcccgc caggatcacc
     6421 gtcttcatga ttctctctgt gccgcctcgc gaaccctacc taggccctct tacagcggac
     6481 gcccccgtcg at
//
LOCUS       DATAJL010000618         2407 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_49380,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000618 DATAJL010000000
VERSION     DATAJL010000618.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49380"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /locus_tag="VHN39_11925"
     CDS             <1..978
                     /locus_tag="VHN39_11925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEX2817099.1"
                     /translation="AFHCAHLTLLDFSETSLFEIEREMAETFPHMSRHAVLCDVRNAA
                     RVTQAFGAQKPDLVFHAAALKHVSMVEQHPCEGVLTNVIGTWNVAEASKSCGAGQMVL
                     ISTDKAVDPTNVMGATKRLAESVIQAQQNGGHGARFSAVRFGNVLGSAGSVVPIFKSQ
                     IERGGPVTVTHPDMERFFMTIPEASQLVLHATATCAEGEGRDARLFLLEMGEPVRIMD
                     LARQMIALSGRTPGKEIEIEITGLRPGEKLTEALLDETERSLPCAHKVLEVVSNSALR
                     ISPAHLAEMEALADRGDVDAVRRALFELVGQIRGERAGGAPNLRVVANG"
     gene            complement(1059..>2407)
                     /locus_tag="VHN39_11930"
     CDS             complement(1059..>2407)
                     /locus_tag="VHN39_11930"
                     /EC_number="4.1.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004611 - phosphoenolpyruvate
                     carboxykinase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0017076 - purine nucleotide binding
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (GTP)"
                     /protein_id="HEX2817100.1"
                     /translation="LGEDGFFVPALHSVGMPLADGQTDVAWPCNEIKYIVQFPETREI
                     WSYGSGYGGNALLGKKCFALRIASVMARDEGWLAEHMLILKLTSPEGDVRFISAAFPS
                     ACGKTNMAMLQPTLDGWKAETIGDDICWMRFGDDGRLYAVNPEAGFFGVAPGTGETTN
                     KNAIAALHANCIFTNVALTDDGDVWWEGLTDEVPAHLIDWRGQDWTPASLEPAAHPNA
                     RFTVPASQCPVVADEWEDPAGVPISAILFGGRRASAVPLVNEARDWAHGVFMASNVAS
                     EGTAAAENSIGELRRDPFAMLPFCGYNMGDYFGHWLALGAKADPAKLPRIYFVNWFRK
                     DERGKFVWPGYGENSRVLKWIVDRLEGRADVVETPIGLLPAPGSLDVTGLGLTQAQLD
                     LLLTVDADIWRQEAALVPAFYDRFGDRLPPALWAELEALVARLGEPARKSTMVAAE"
BASE COUNT          376 a          870 c          795 g          366 t
ORIGIN      
        1 gccttccact gcgcccacct gaccctgctg gacttctccg agacctcgct cttcgagatc
       61 gagcgcgaga tggccgagac cttcccgcac atgtcgcgcc acgcggtgct ctgcgacgtc
      121 cgcaacgccg cccgcgtcac ccaggccttc ggcgcccaga agcccgacct ggtcttccac
      181 gccgcggccc tgaagcacgt ctctatggtc gagcagcacc cctgcgaggg cgtgctcacc
      241 aacgtcatcg gcacctggaa tgtggccgag gcctcgaaat cctgcggcgc cggtcagatg
      301 gtgctgatct ccaccgacaa ggccgtcgac ccgaccaacg tcatgggcgc caccaagcgc
      361 ctggccgaga gcgtcatcca ggcccagcag aacggcggcc atggcgcgcg cttctccgca
      421 gtgcgcttcg gcaacgtcct gggctcggcg ggctccgtgg tgccgatctt caagtcgcag
      481 atcgaacgcg gcggcccggt caccgtgacc catccggaca tggagcggtt cttcatgacc
      541 atcccggagg cgagccagct cgtcctccac gccaccgcca cctgcgccga gggcgaaggc
      601 cgcgatgcgc gcctgttcct gctggagatg ggcgagccgg tccggatcat ggacctcgcc
      661 cgtcagatga tcgcgctctc cggccgcacg cccggcaagg agatcgagat cgagatcacc
      721 ggcctgcgcc ccggcgagaa gctcaccgag gccctgctgg acgagaccga gcggtcgctg
      781 ccctgcgccc acaaggtgct ggaggtggtc tccaactccg ccctgcgcat ctcgccggcc
      841 catctggccg agatggaggc cttggccgat cgtggcgacg tggacgccgt gcgccgcgcg
      901 ctcttcgaac tggtgggcca gatccgcggc gaacgcgccg gcggcgcccc caacctgcgc
      961 gtcgtcgcca acggctgagg ccggacggct tcccccggaa tcgaaaaggg ccgcggtcat
     1021 ccgcggccct cgtcatttgc agcctttgcg gtggaggctt actccgccgc caccatcgtc
     1081 gacttgcggg ccggctcgcc cagacgggcc accagggcct ccagctcggc ccagagcgcg
     1141 ggcggcaggc ggtcaccgaa gcggtcgtag aaggccggca ccagggccgc ctcttgccgc
     1201 cagatgtcgg cgtccacggt gagcaagagg tccaactgag cctgggtcag gccaagcccc
     1261 gtgacgtcca ggctgcccgg cgcgggcagc aggccgatcg gggtctccac cacatcggcg
     1321 cggccttcca gccggtcgac gatccatttc agcacgcggc tgttctcgcc atagcccggc
     1381 cagacgaact tgccgcgctc gtccttgcgg aaccagttca cgaaatagat gcgcggcagc
     1441 ttggccggat cggctttcgc gcccagcgcc agccagtggc cgaaatagtc gcccatgttg
     1501 tagccgcaga agggcagcat cgcgaacggg tcccggcgca gctcgccgat cgagttctcg
     1561 gccgccgccg tgccctccga ggccacgttg gaggccatga acaccccgtg cgcccagtcg
     1621 cgggcctcgt tgaccagcgg cacggcgctg gcgcgccgtc cgccaaacag gatggccgag
     1681 atcggtacgc cggcgggatc ctcccactcg tcggccacca ccgggcactg cgaagccggc
     1741 acggtgaagc gggcgttcgg atgggcggcg ggctccaggc tcgccggcgt ccagtcctgg
     1801 ccgcgccagt cgatcaggtg ggcaggaacc tcgtccgtga ggccttccca ccagacgtcg
     1861 ccgtcgtcgg tcagggcgac gttggtgaag atgcagttgg cgtgcagggc ggcgatggcg
     1921 ttcttgttgg tcgtctcgcc tgtgcccggc gccacgccga agaagccggc ttccgggttc
     1981 accgcataga gccgcccgtc gtcgccgaag cgcatccagc agatgtcgtc gccgatcgtc
     2041 tcggccttcc agccgtcgag cgtcggctgc agcatggcca tgttggtctt gccgcaggcg
     2101 ctggggaacg ccgccgaaat gaaccgcaca tcgccctcag gcgacgtcag cttcaggatc
     2161 agcatgtgct cggcgagcca gccctcgtcg cgggccatca ccgaggcgat ccgcagggcg
     2221 aagcacttct tgcccaggag cgcgttaccg ccgtagccgg agccgtagga ccagatctcg
     2281 cgggtctcgg ggaactgaac gatgtatttg atttcgttgc agggccaggc gacgtcggtc
     2341 tggccgtccg ccagcggcat cccgaccgag tgcagcgctg gcacaaaaaa gccgtcctca
     2401 ccgagct
//
LOCUS       DATAJL010000619         4518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94735,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000619 DATAJL010000000
VERSION     DATAJL010000619.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4518
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94735"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..1541
                     /gene="trpE"
                     /locus_tag="VHN39_11935"
     CDS             3..1541
                     /gene="trpE"
                     /locus_tag="VHN39_11935"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HEX2817101.1"
                     /translation="MEPAYPAFEQAYQAGAPQVVWTRLIDDLETPVSAYLKIGHGRPY
                     AFLFESVEGGAFRARYSIITLNPDLVWRCRGDKAEIAEGDDIAAGRFTPQPGAALDSL
                     RDLVAASRIELPAGLPPPSAGLFGAIGYDMIRLVERLPDINPDPLNLPDGVMTRPSVV
                     AIFDAIAQEIILVTPVRPGSLSAKDAYAAAQARLQAVRDDSQRPTPALKGDGVPEPDA
                     FTSPISRERYCEIVEQAKDYIRAGDVFQVVPSHRFRSPFTRDPFALYRSLRRTNPSPF
                     LFYLNFGDFQLAGSSPEILVRLRDGKITIRPLAGTRPRGATPAEDLALEQELITDPKE
                     HAEHLMLLDLGRNDVGRVAMLKDRGANAAPPAPQVTRGAPRVRVTASFFVERYSHVMH
                     LVSNVEGDAPDGLDPVDVVMAALPAGTLSGAPKVRAMEIIDELEIEKRGVGYAGGVGY
                     FGCDGSVDTCIVLRTALFKDGVMYVQAGGGVVADSDPNAEYEETLHKARALRSAAVES
                     WRFV"
     gene            complement(1548..1754)
                     /locus_tag="VHN39_11940"
     CDS             complement(1548..1754)
                     /locus_tag="VHN39_11940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817102.1"
                     /translation="MSVADSALDRQEMARARALLDPPKAPERIWPALGAAGLLAISAL
                     TFATAMILAPPLTGEHLAQQRATK"
     gene            1864..3003
                     /locus_tag="VHN39_11945"
     CDS             1864..3003
                     /locus_tag="VHN39_11945"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2817103.1"
                     /translation="MTQTLPRRVLVLQGGGALGSYQAGVYEALNRAGPEPDWLAGISI
                     GAINAAIIAGNAPGMRLERLQEFWTLVTSGWSFGPPTSTDLFRGLLGDASIGWAMTTG
                     VPGFFSPRAISPLLLSSGGPEALSFYDSTPLRATLERLVDFDRINARETRLSVGAVNI
                     RTGNFTYFDNAHQKIGPEHIMASGALPPGLPPVEIEGEWYWDGGLVSNTPLEYVLEQG
                     ETDDLVIYQVDLFNARGPMPKTLQEAAEREKDIRYSSRTRLNTDAQLRIHRLKTSLAS
                     LLKTLPEDTTEDPEISLLKDFAKEPSVIVVQLIYRDRAYEGSFKDVEFSRQTMLDHWA
                     SGLADGERTVRRRTHNPPHPGPGGAVSIDPGLDADPNTDSKDERP"
     gene            3000..3785
                     /locus_tag="VHN39_11950"
     CDS             3000..3785
                     /locus_tag="VHN39_11950"
                     /EC_number="1.1.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003858 - 3-hydroxybutyrate dehydrogenase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxybutyrate dehydrogenase"
                     /protein_id="HEX2817104.1"
                     /translation="MILKSKTAVVTGSTSGIGLGYARAMAAEGANILINGFGKPEDIE
                     KERAAIEADFGVKAIYSPADMTKPTEIAAMVALAETTFGSVDVLVNNAGIQFVSPVEE
                     FPVEKWDQIIAINLTSAFHAIRAAVPGMKQRGWGRIISTASAHSLVASPFKSAYVAAK
                     HGIAGLTKTVALELATHGVTVNCISPGYVWTPLVENQIPDTMKARGMTREQVINEVLL
                     DSQPTKQFVTIEEVAAIAIFLCGDAAKQITGANLSVDGGWTAE"
     gene            3799..4389
                     /locus_tag="VHN39_11955"
     CDS             3799..4389
                     /locus_tag="VHN39_11955"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017503945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEX2817105.1"
                     /translation="MILVIDNYDSFTYNLVHYLNELGAETHVVRNDAIGVGEALGMQP
                     QGVLLSPGPKTPNDAGICLALLNAAPADLPIFGVCLGHQAIGQAYGGEVIHAKALMHG
                     KTSLIHHGGKGVFAGLKNPFTATRYHSLSVQKQDLPAALEVTAWTDDGEIMGVQHRTR
                     PVFGVQFHPESIATECGYDLLANFLEIAGVKRLAEA"
     gene            4399..>4518
                     /locus_tag="VHN39_11960"
     CDS             4399..>4518
                     /locus_tag="VHN39_11960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEX2817106.1"
                     /translation="MSDAFKPLLSLLADGGTLSGESADEFFAACLRGEPSPAQV"
BASE COUNT          769 a         1572 c         1479 g          698 t
ORIGIN      
        1 ccgtggagcc tgcgtatccg gctttcgagc aggcatacca ggcgggcgcc ccgcaggtcg
       61 tctggacgcg gctgatcgac gacctggaga ccccggtctc ggcctatctg aagatcggcc
      121 atgggaggcc gtacgccttc ctgttcgaaa gcgtcgaggg cggcgctttc cgcgcgcgct
      181 attcgatcat cacgctgaac ccggacctgg tctggcgttg ccggggcgac aaggcggaga
      241 tcgccgaggg cgacgacatc gccgccggac gcttcacgcc ccagcccggc gcggcgctgg
      301 acagcctgcg cgacctggtc gccgcctcgc ggatcgagct gccggccggc ctgccgccgc
      361 cgtcggcggg cctgttcggg gccatcggct acgacatgat ccggctggtc gagcgcctgc
      421 cggacatcaa tcccgacccg ctgaacctgc cggacggggt gatgacccgg ccgtcggtgg
      481 tggcgatctt tgacgccatc gctcaggaga tcatcctggt gacgccggtg cggccaggct
      541 cgctgtcggc caaggacgcc tatgccgcgg cgcaggcgcg cctgcaggcc gtccgagacg
      601 actcccagcg tcccaccccg gcgctgaaag gcgacggcgt gccggaaccg gacgccttca
      661 cctctccgat cagccgcgag cgctattgcg agatcgtcga gcaagccaag gactatatcc
      721 gcgccggcga cgtcttccag gtggtgccga gccaccgctt ccgcagtccc ttcacgcgcg
      781 acccgttcgc gctctaccgg tcgctgcggc ggaccaatcc ctcgcccttc ctgttctatc
      841 tgaacttcgg cgacttccag ctggcgggct cctcgccgga aatcctggtg cgcctgcgcg
      901 acggcaagat caccatccgg ccgcttgccg gcacaagacc gcggggcgcg accccggccg
      961 aggatctggc tcttgagcag gagctgatca ccgatcccaa ggagcatgcc gagcacctga
     1021 tgctgctcga ccttggccgc aacgatgtgg gccgggtggc gatgctgaag gaccgcgggg
     1081 ccaatgccgc gccgccggcg ccccaggtca cccggggcgc gccacgggtg cgggtgacgg
     1141 ccagcttctt cgtggagcgc tacagccacg tgatgcacct ggtctccaac gtcgagggcg
     1201 atgcgcctga cggcctcgat cccgtggacg tggtgatggc cgccctgccc gccggcacgc
     1261 tctccggcgc gcccaaagtc cgggccatgg agatcatcga cgagctggag atcgaaaagc
     1321 gcggcgtggg atatgccggc ggcgtcggct acttcggctg cgacggctcg gtggacacct
     1381 gcatcgtgct caggaccgcg ctcttcaagg acggcgtcat gtacgtccaa gccggcggcg
     1441 gcgtggtggc cgactcggat cccaacgcgg agtacgaaga gaccctgcac aaggcgcgcg
     1501 ccctacgcag cgcggccgtg gaaagctggc gtttcgtctg aggcgggcta cttcgtggcg
     1561 cgctgctggg ccaggtgctc gccggtgagc ggcggcgcca ggatcatggc ggtggcgaag
     1621 gtcaacgccg agatcgccag caggccggcc gcgcccagcg ccggccatat gcgctccggc
     1681 gcctttggcg gatcgagcag cgcgcgggcg cgggccatct cctggcggtc gagggcggaa
     1741 tcagcaacgg acatggcgga aggatcggcc caagccttgc cgggcgcaat cagcggcgcc
     1801 acatggcagt catgttgcgg cgcaatatag tcgcgccagc cctccgatgg acgcccgtcg
     1861 cccgtgacac agaccctccc ccgacgcgtc ctcgtcctgc agggcggcgg agccctgggc
     1921 tcctaccagg ccggggtcta tgaggcgctg aatcgggccg gaccggagcc ggactggctg
     1981 gcgggcatct cgatcggcgc gatcaacgcc gcaatcattg cgggcaacgc gcccggcatg
     2041 cggctggagc gactgcagga attctggacc ctggtgacat ccggctggtc cttcgggccg
     2101 cctaccagca cagacctctt ccgcggcctg ctgggcgacg ccagcatcgg ttgggcgatg
     2161 acgaccggag ttccgggctt tttctcgccg cgcgcgatct cgccgctgct gctttccagc
     2221 ggcgggccgg aagcgctcag cttttacgat tcaaccccgc tgagagccac cctcgaacgg
     2281 ctggtggatt tcgaccggat taacgcccgc gagacccgtc tgagcgtcgg cgcggtgaat
     2341 atccgcaccg gcaacttcac gtacttcgac aatgcccacc agaagatcgg gccggaacac
     2401 ataatggcct ccggcgccct gccgcccggc ctgccgccgg tggagatcga gggcgagtgg
     2461 tactgggatg gcggcctcgt ctccaatacg cccctcgaat atgtcctgga gcagggcgag
     2521 acggacgatc tggtgatcta tcaggtggat ctgttcaacg cgcggggccc gatgcccaag
     2581 acgcttcagg aggcggccga gcgagaaaag gacatccgct actccagccg cacgcgcctc
     2641 aacaccgacg cccagcttcg cattcaccgg ctgaagacca gcctagccag cctgctcaag
     2701 accttgcccg aggacacgac ggaggacccg gagatcagtc ttctcaagga tttcgccaag
     2761 gaaccttcgg tgatcgtcgt gcagctgatc tatcgcgacc gggcctatga gggcagcttc
     2821 aaggacgtgg agttttcccg tcagaccatg ctcgaccact gggcctcggg cctcgccgac
     2881 ggggaacgca ccgtgcgccg ccggacccac aatccgccgc atccgggccc cggcggcgcg
     2941 gtcagcatcg atcccggcct cgacgccgat cccaacactg acagcaagga cgagcgacca
     3001 tgatcctcaa atccaaaacc gccgtcgtca ccggctccac cagcggaatc ggcctgggat
     3061 atgcgcgagc catggccgct gagggcgcca acatcctgat caacggcttc gggaagcccg
     3121 aagacatcga gaaggaacgc gccgccatag aagccgactt cggcgtcaag gcgatctact
     3181 ccccggccga catgaccaag cccaccgaga tcgccgccat ggtcgcgctc gctgaaacca
     3241 ccttcggctc ggtggacgtg ctggttaaca acgccggcat ccagttcgtc tcgccggtgg
     3301 aggagttccc tgtcgagaag tgggaccaga tcatcgccat caacctgacc tcggccttcc
     3361 acgcgatccg cgcggcggtg cccggcatga agcagcgcgg ctggggccgg atcatctcca
     3421 cagcctccgc ccacagcctc gtcgcctcgc ccttcaagtc ggcctatgtg gcggccaagc
     3481 atgggatcgc gggcctgacg aagactgtcg ccctggagct cgccacccac ggcgtaacgg
     3541 tcaactgcat cagccccggc tatgtctgga cgccgctggt tgagaaccag attcccgaca
     3601 ccatgaaagc ccgcgggatg acgcgcgaac aggtgatcaa cgaggtcctg ctggacagcc
     3661 agcccaccaa gcagttcgtc accatcgagg aggtcgccgc gatcgccatc ttcctttgcg
     3721 gcgacgcagc caagcagatc accggggcaa atctgtctgt ggacggcggc tggacggcgg
     3781 aataaggctc gtcgcgctat gatcctggtg atcgataact acgacagctt tacctacaac
     3841 ctggttcatt acctgaacga gctgggcgcg gagacgcatg tcgtacgcaa cgacgcgatc
     3901 ggcgtgggcg aggcgcttgg gatgcagccg cagggcgtgc tgctgtcgcc gggacccaag
     3961 acgcccaacg acgccggcat ctgcctggcc ctgctgaacg ccgccccggc cgacctgccg
     4021 atcttcggcg tttgcctggg ccaccaggcg atcggccagg cctatggcgg cgaggtgatc
     4081 cacgccaagg cgctgatgca cggcaagacc agcctgatcc atcacggcgg caagggcgtg
     4141 ttcgccggcc tgaagaaccc cttcaccgcc acacgctacc acagcctgtc ggtgcaaaag
     4201 caggacctgc ccgccgccct ggaggtcacc gcctggaccg acgacggcga gatcatgggt
     4261 gtgcagcacc ggacccgccc ggtgttcggc gtgcagttcc acccggaatc catcgccacg
     4321 gaatgcggtt atgacctgct ggccaatttc ctcgagatcg ccggcgtgaa gcgtctggcg
     4381 gaagcctgac gccggccgat gtccgacgcc ttcaagcccc tgctcagcct cctggccgat
     4441 ggcggcaccc tgtccgggga gagcgccgac gagttcttcg ccgcctgtct gcgcggcgag
     4501 ccgagcccgg cccaggtg
//
LOCUS       DATAJL010000620         3487 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36725,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000620 DATAJL010000000
VERSION     DATAJL010000620.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36725"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..580)
                     /locus_tag="VHN39_11965"
     CDS             complement(<1..580)
                     /locus_tag="VHN39_11965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817107.1"
                     /translation="MRAILLALGFAGLAASAQAGTVTADFEGLTSTFVVQPSVVSQGY
                     HFAASGGSDLAVIANGGPTICSPLCSDDGTAVLIFGTPPGTGINPASVGPLVITGSQP
                     FTLSGFDYAELQPTGSSVNATFLRVTGFLTGGGTLSRIVGLDGINDGPGGVADFQTVA
                     FDAPFAASDFTSVQIRGMANADRVGGFELDNVV"
     gene            complement(761..1243)
                     /locus_tag="VHN39_11970"
     CDS             complement(761..1243)
                     /locus_tag="VHN39_11970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEX2817108.1"
                     /translation="MTIKVGDKLPSVTLTLATAEGPKPVTTEEFFGGKKVGLFALPGA
                     FTPTCSAKHLPGFKQLAGEIKAKGIDVIDCLSVNDAFVMRAWAEDQAVGEDIAMLADG
                     GAAFTDAVGLSFDASRFGMGKRSQRYSMIVDDGVVKELNIEEGGEFRVSAADYMLAQL
                     "
     gene            1370..1933
                     /locus_tag="VHN39_11975"
     CDS             1370..1933
                     /locus_tag="VHN39_11975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HEX2817109.1"
                     /translation="MEGGFFSGQLLIAMPGISDPRFERALILICAHDQEHAMGLALNS
                     PVEGLTVPDLLEKLGVESTIRLPPDLVLMGGPVEIDRGFVLHTADYQGEHSLDVGAGV
                     ALTATREVLEAMASHNRAPARSLLALGYAGWGAGQLEEEIKQNVWLTCEADDGLIFDH
                     DYGQKWTRALAKLGVDPERLSTMAGRA"
     gene            complement(1949..2479)
                     /gene="fabA"
                     /locus_tag="VHN39_11980"
     CDS             complement(1949..2479)
                     /gene="fabA"
                     /locus_tag="VHN39_11980"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008693 -
                     (3R)-3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HEX2817110.1"
                     /translation="MADPHEFHKPKSHYTKDDLILSGRGGYFGPGNAQLPAPPMLMMD
                     RITELSLDGGEFGKGHIVAELDITPDLWFFDCHFPGDPVMPGCLGLDAMWQMLGYWLG
                     WSDSPGKGRALGVGEVRFRGDITPATRMVRYEVSLRQVRRGKLALGVANGRLFADNVC
                     VYVATDLRVGMIRSTP"
     gene            complement(2594..>3487)
                     /locus_tag="VHN39_11985"
     CDS             complement(2594..>3487)
                     /locus_tag="VHN39_11985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEX2817111.1"
                     /translation="AVESAKNNGRGGASTYGRGMESDGLSRLALEGDLKGALGRGELV
                     PFYQPIVRLSTGALSGFEALVRWRHPRRGLLMPDTFLPLCEEMGLMEELGAMMMRESA
                     RQLATWRQKHKAAGELTVAVNLSTHEIDRPDLVSDVAAIRRETGLPPGALKLEVTEGD
                     VMRDPERAAIILGELRGAGAGLALDDFGTGFSSLSYLTRLPFDTLKVDRYFVRTMATN
                     EGSLKIVSSVVKLGQDLNLSIVAEGVENAGMARQLLALGCDYGQGFGYAPALSAQEAE
                     VYLNESYVDGAAPVKAKGSRG"
BASE COUNT          582 a         1127 c         1224 g          554 t
ORIGIN      
        1 ggaccacatt gtccagttcg aagccaccga cccggtcggc gttggccatg ccgcggatct
       61 gcacgctggt gaaatccgac gccgcgaagg gcgcgtcgaa ggcgactgtc tggaaatcgg
      121 ccacgccgcc cggaccgtca ttgatcccgt cgagcccgac gatgcggctg agcgtgccgc
      181 cgccggtcag gaagccggtg acgcgcagga aggtggcgtt gacgctgctg ccggtcggct
      241 gcagctcggc gtagtcgaag cccgacaggg tgaagggctg gctgccggtg attaccagcg
      301 ggccgaccga ggccgggttg atgccggtgc ccggcggcgt cccgaagatc agcaccgcgg
      361 tgccgtcgtc ggaacagagc gggctgcaga tcgtggggcc gccgttggcg atgaccgcca
      421 ggtcggagcc gccgctggcc gcgaagtggt agccttggct gaccacggag ggctgcacga
      481 cgaaggtcga ggtgaggcct tcgaagtccg cggtgaccgt tccggcctgg gccgaagcgg
      541 cgaggccggc gaatccgagg gcgagaagta tggcgcgcat ggtgggagat cccggctctg
      601 agccacgaat tcagcgccac cggcatggcg gcgctggctc gtgacgttgg acgaacgcgc
      661 cctaaagagc cggggattcg cgccgccgca acgacgcgca acccgggtac gaaatcttcg
      721 cgtcagatgc taagtctggt ccgagaaaag gctgaaaacc ctagagctgg gccagcatgt
      781 agtcggcggc cgagacgcgg aattcaccgc cctcttcgat attcagctcc ttcaccacgc
      841 catcgtcgac gatcatcgag tagcgctgcg agcgcttgcc catgccgaag cgcgaggcgt
      901 cgaagctgag gcccaccgcg tcggtgaagg ccgcgccgcc gtcggccagc atggcgatgt
      961 cctcacccac ggcctgatcc tcggcccagg cgcgcatgac gaaggcgtcg ttgaccgaca
     1021 ggcagtcgat cacgtcgatg cccttggcct tgatctcgcc ggccagttgc ttgaagcccg
     1081 gcaggtgctt ggccgagcag gtgggggtaa aggcgcccgg cagcgcgaac aggcccacct
     1141 tcttgccgcc gaagaactcc tcggtggtga cgggcttggg accctcggcg gtggccaggg
     1201 tgagggtaac gctgggcagc ttgtcgccga ctttgatggt catgggtccg ttcctcttga
     1261 gctggagcct tgggagatag cgtcatctcc gcgcaccgca agccgtcaac gtctcctgcg
     1321 gcgcgaaggt cccttgaaac cgccacgttg ccagtgaaat gtcgaggcga tggaaggcgg
     1381 ttttttctcc ggtcagctcc tgatcgccat gccgggcatc tccgacccgc gcttcgagcg
     1441 cgcgctgatc ctgatctgcg cgcacgacca ggagcacgcc atgggcctgg cgttgaacag
     1501 cccggtcgag gggctgacgg tcccggacct tttggaaaag ctcggggtgg agtcgacgat
     1561 ccggctgccg ccggacctgg tgctgatggg cgggccggtg gagatcgacc ggggcttcgt
     1621 gctgcacacc gccgactacc agggcgagca cagcctcgac gtcggcgccg gcgtggcgct
     1681 caccgccacc cgcgaggtgc tggaggccat ggccagccac aaccgggcgc cggccaggag
     1741 cctgctggcg ctgggctacg ccggctgggg ggcggggcag ctggaggagg agatcaagca
     1801 gaacgtctgg ctgacctgcg aggccgacga cggcctgatc ttcgaccacg actacgggca
     1861 gaaatggacc cgggcgctgg ccaagctggg cgtcgacccg gagcggctga gcacgatggc
     1921 gggacgggcg taacccgtca ccgacctctc agggtgtgga tctgatcatg ccgaccctca
     1981 ggtccgtcgc gacatagaca cagacgttgt ccgcaaacag ccggccgttc gccacgccca
     2041 gcgccagctt gccgcgccgg acctgccgca ggctcacctc atagcgcacc atccgggtcg
     2101 caggcgtgat gtcgcctcgg aacctgacct cgcccacgcc gagagcgcgc cccttgcccg
     2161 gcgagtccga ccagcccagc caatagccga gcatctgcca catggcgtcc aacccaaggc
     2221 agcccggcat gaccggatcg ccgggaaagt gacagtcaaa gaaccagagg tccggggtga
     2281 tatccaactc ggcgacgatg tgacccttcc cgaactcacc gccgtcgagg ctgagttccg
     2341 tgatccggtc catcatgagc atcggcgggg cggggagctg cgcattgccc ggcccgaaat
     2401 agccgcctcg gccggaaagg atcagatcgt cctttgtgta gtgagacttc ggcttatgaa
     2461 attcgtgcgg atctgccacg gcggcggttc cttcctgaat tgagcccctg aggtgtgcgg
     2521 tcaggcgatg cggtcgcttg tgctgtggtc ttgccgaacc cagtccgggc tcgataggcg
     2581 tttcgggtga gggttagccc cgcgagccct tggctttcac cggagcggcg ccgtcgacgt
     2641 agctttcgtt gaggtagacc tcggcctcct gggcggagag cgcgggcgcg tagccgaagc
     2701 cctggccgta gtcacagccc agcgccagga gctggcgggc catgccagcg ttttcgacgc
     2761 cttcagccac gatcgacagg ttgaggtcct gacccagctt caccaccgag gagacgatct
     2821 tcagcgagcc ctcgttggtg gccatggtgc gcacgaagta gcggtcgacc ttcagagtgt
     2881 cgaacggcag acgcgtcagg taggagagcg aggagaagcc ggttccgaag tcgtcgaggg
     2941 ccaggcccgc gcccgcgccg cgcagttcgc caagaatgat cgccgcgcgc tcgggatcgc
     3001 gcatgacgtc gccttcggtg acttccagct tgagcgcgcc tggcggcagg ccggtctcgc
     3061 ggcggatggc ggccacgtcg gagaccaggt ccgggcggtc gatctcgtgg gtggagaggt
     3121 tgacggcgac ggtcagttcg cctgcggcct tgtgcttctg gcgccaggtg gccagttgcc
     3181 tggcggactc gcgcatcatc atggcgccca gctcttccat cagccccatc tcttcgcaga
     3241 gcggcaggaa ggtgtcgggc atcagaaggc cccggcgcgg gtggcgccag cggaccaggg
     3301 cctcgaagcc ggagagcgcc ccggtcgaga gcctgacgat cggctgatag aagggcacca
     3361 gttcaccacg gccgagcgcg cccttgaggt cgccctccag agccaggcgg gagagcccgt
     3421 cgctctccat gccgcgtcca taggtggagg cgcccccgcg gccgttgttc ttggccgatt
     3481 ccacagc
//
LOCUS       DATAJL010000621         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_107555,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000621 DATAJL010000000
VERSION     DATAJL010000621.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107555"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1236
                     /locus_tag="VHN39_11990"
     CDS             <1..1236
                     /locus_tag="VHN39_11990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2817112.1"
                     /translation="PVTAAVEAAREAITHATVAKYLFTSGSTGMPKGVPQTHGMFAGV
                     IAGTDGLRDEPVDPELVPQSLEWMPWSHISAGNIGFNGLLWAGGTLHLDEGKPIPGMF
                     ETTIKNLSEISPMGFGSAPVAFGMLAEAMESDPVLRRSFFKNLRSMGYGGATLSTDVS
                     ERMQALAIAETGYRIPLVTMYGATETQGITVVHWITERVGLIGLPLPGITLKLVPNGT
                     KLEVRVKGPTVTSGYHNDPEKTAAAFDEEGFYKLGDACRFLDPDDPSQGLVFDGRVTE
                     DFKLDSGTWVSVGTLRPDVVAACSPYVLDAVVTGQDKPFAGALIWPSPAALAGLGEGG
                     FDKLAPILKDRLQAFNASAGGSSRRIGRFQILRELPSIDAGEITDKGYVNQRAALERR
                     HAEVEALYAREPGANVVEL"
     gene            1240..>1895
                     /locus_tag="VHN39_11995"
     CDS             1240..>1895
                     /locus_tag="VHN39_11995"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2817113.1"
                     /translation="MPPSSSSGEIILHHYDTSPFSEKVRVMLGVKGLSWRSVIQPVIM
                     PKPELVPLTGGYRRIPVLQVGADIYCDTQVILAELEARQARPAVVRGADWAVNLWADR
                     LFFQVTVAVVFGEMGDSVPAAFIADREKLSGRPFDMAAMKAVAGPMKDQWRAHAAWIE
                     RGLASNDFLGGSTPSLADIAAYMNVWWLGRAASGATDALLEGLPKTVSWRARMAALGH
                     G"
BASE COUNT          297 a          624 c          667 g          307 t
ORIGIN      
        1 ccggtgaccg cggcggtgga ggcggcgcgg gaagcgatca cccacgcgac agtcgccaaa
       61 tacctgttca cctccggctc caccggcatg ccgaaggggg tgccgcagac ccacggcatg
      121 ttcgccggcg tgatcgccgg caccgatggc ctgcgcgacg agccggtcga tccggagctt
      181 gtgccacaga gcctggagtg gatgccctgg agccacatct cggcgggcaa catcggcttc
      241 aacggcctgt tgtgggccgg cggcacgctg catctggacg agggcaagcc gatcccgggg
      301 atgttcgaga ccaccatcaa gaacctcagc gagatctcgc ccatggggtt cggctctgcg
      361 ccggtggcct tcggcatgct ggccgaggcg atggagtctg atccggttct tcgccgcagc
      421 ttcttcaaga acctgcgcag catgggctat ggcggggcga cgctctcgac cgacgtctcc
      481 gaacgcatgc aggcgctggc gatcgccgag accggctacc gcattccgct cgtcaccatg
      541 tatggcgcca cggagacgca agggatcacg gtggtgcact ggatcaccga gcgggtgggg
      601 ctgatcggcc tgccgctgcc ggggatcacc ctgaagctcg tccccaacgg gaccaagctg
      661 gaggtccggg tgaagggccc caccgtgacc agcggctacc acaacgatcc ggagaagacg
      721 gccgcggcct tcgacgagga gggcttctac aagctgggcg acgcctgccg gttcctcgac
      781 ccggacgatc cgagccaggg cctggtgttc gacggccggg taaccgagga cttcaagctg
      841 gattccggca cctgggtttc ggtgggcacc ctgcgtcccg acgtggtggc ggcctgcagc
      901 ccctatgtgc tggacgcggt ggtgaccggc caggacaagc ccttcgccgg cgccctgatc
      961 tggccctcgc ccgcggcgct cgcgggcctc ggggagggcg ggttcgacaa gctcgcgcca
     1021 atcctcaagg acaggctcca ggccttcaac gcgtcagccg gcggctcgtc gcggcgcatc
     1081 gggcggttcc agattctgcg ggagctgccg tcgatcgacg ctggcgagat caccgacaaa
     1141 ggctatgtga accagcgcgc cgcgcttgag cgccgccatg ccgaggtcga ggcgctctat
     1201 gcgcgtgagc ccggcgccaa tgtcgtggag ctctagccga tgcccccctc aagttcgtcc
     1261 ggcgaaatca tcctgcacca ctacgacaca tcgcccttct cggagaaggt cagggtaatg
     1321 ctgggggtga aggggctctc gtggcgttcg gtaatccaac cggtgatcat gcccaagcct
     1381 gaactggttc cgctgaccgg cggctaccgg cgcatcccgg tgctgcaagt gggcgccgac
     1441 atctattgcg acacccaggt catcctggcc gagctggagg cgcggcaggc caggccggcg
     1501 gtagttcgcg gcgccgactg ggcggtcaat ctttgggccg accggctgtt cttccaggtg
     1561 accgtggcgg tggtgttcgg cgagatgggc gacagcgtgc cggccgcctt catcgccgac
     1621 cgcgagaagc tctccggccg gcccttcgac atggccgcca tgaaggctgt ggctgggccg
     1681 atgaaggacc agtggcgggc gcatgccgcc tggatcgagc gtggcttggc cagcaacgat
     1741 ttcctcggcg gatcaacgcc ttccctggcg gatatcgcag cttacatgaa cgtctggtgg
     1801 ctgggccgcg cggcgtccgg cgccacggac gccctgctcg aggggctgcc gaagacggtc
     1861 tcctggcgcg cgcggatggc ggcgctgggc catgg
//
LOCUS       DATAJL010000622         2936 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10748,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000622 DATAJL010000000
VERSION     DATAJL010000622.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2936
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10748"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            31..429
                     /locus_tag="VHN39_12000"
     CDS             31..429
                     /locus_tag="VHN39_12000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817114.1"
                     /translation="MIFGKVAGMVAAFAAIAAAAAICMVAAAFAIYAGLRDLIGPAWA
                     SAAVAGIVALIALIIALIITAKARPKPLKDEPPSLAAKLIDLAKERPLIAAGALTAAA
                     AAATVVAIRNPRLLTAIVAGLFAPPPPPKR"
     gene            512..688
                     /locus_tag="VHN39_12005"
     CDS             512..688
                     /locus_tag="VHN39_12005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HEX2817115.1"
                     /translation="MLGWALTFLVVALIAGVLGFTTIAGAAIGIAKIAFYVFLVLFVV
                     SLIMNFVRGRGTSL"
     gene            complement(685..1476)
                     /locus_tag="VHN39_12010"
     CDS             complement(685..1476)
                     /locus_tag="VHN39_12010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX2817116.1"
                     /translation="MTVRLAHLSDIHFGGENKPAVAAAIELLNAGAFDLVVVTGDLTR
                     YAEVAEFEAAAAWLAQIQAPKLVTPGNHDAPYLAWAERIFAPFRRYEHAIGPAAAQTH
                     LGGGFAVRGLNTARGAQPRLNWSKGQISRRQVAAAVDWFEDSHRECIRIVACHHPLTE
                     MIGGPMTARVWGGPAAARDFTRAKVDLVLSGHIHAPFTWPYGFGDGKTYAVGSGTLSL
                     RERGGVPPSFNVVDIEGAAIRIAALGWMGSHFEPYRTWSVDRRPS"
     gene            complement(1476..2348)
                     /locus_tag="VHN39_12015"
     CDS             complement(1476..2348)
                     /locus_tag="VHN39_12015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEX2817117.1"
                     /translation="MTGVKKVEVIANIASGSVGPTAPAEIEKILSDCGLAATIHAPEP
                     HRLTECLRAAVDNAPDLLIVLAGDGTARAAAELCGPDGPMIAPLPGGTMNMLSRAIYG
                     VRPWQAALKLALDQGYERPIGGGEVEGHSFLVAAILGSPALWAPAREAARFGKAKLAW
                     LRARRAMRRTFHGRLRYILDGAAREKAEALMFMCPLTSRALDNDDSALEAAAFDVNGA
                     ADIMRVGLHAVTGDWRDTPGVEVSRCQVARIWAAHGIPALLDGESVRLKTLAEVRYTK
                     KVARILAIPKDART"
     gene            complement(2368..2757)
                     /locus_tag="VHN39_12020"
     CDS             complement(2368..2757)
                     /locus_tag="VHN39_12020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817118.1"
                     /translation="MVGARLDPASLDQADRTASLNRAEQFDLREVQADVREAYERGRK
                     DERASRRRHPVMMTLTFAAAACGVALLALAAINGSFAGGGSVADQNLNAAVNRAEPQV
                     RDAASQAGQSLRDAGVKAKAKANGVPG"
BASE COUNT          411 a         1043 c         1030 g          452 t
ORIGIN      
        1 ccgctgatct ccacttaaga tctgggggac gtgatcttcg ggaaagtcgc cggcatggtc
       61 gccgccttcg ccgccatcgc ggcggcggcg gcgatctgca tggtcgcggc ggccttcgcg
      121 atctacgcgg gcctgcgcga cctcataggc ccggcctggg cctcggccgc cgtcgccgga
      181 atcgtggcgc tgatcgcgct gattatcgcc ctgatcatca cggccaaggc gcggccgaag
      241 cccttgaagg acgagccccc cagcctcgcc gccaaactga tcgatctggc caaggaacgg
      301 ccgctgatcg ccgccggcgc gctgaccgcc gcggctgccg ccgccacggt ggtggcgatc
      361 aggaaccctc gcctcctcac cgccattgtc gccgggctgt tcgccccgcc gccgccgccc
      421 aagcgctgag cgcgcccagg acggaacggc gccgcgctcc aggcgttgga ttcggcggta
      481 gcgccatgac ggcgcggatg gagaaactcc aatgcttggc tgggctctca ctttcctggt
      541 ggtcgcgctg atcgccggcg tcctcggctt caccaccatc gcgggcgcgg cgattggcat
      601 cgccaagatc gccttctacg tgttcctggt gctgttcgtg gtctcgctga tcatgaactt
      661 cgtgcggggt cgcggcacgt ccctctagct aggacgccga tctacagacc aggtgcgata
      721 gggctcgaag tgcgagccca tccaccccag ggcggcgatg cgaatcgccg ccccttctat
      781 gtccaccaca ttgaaactcg gcggtacgcc cccgcgctca cggagcgaaa gcgtgcccga
      841 ccccacggcg taggtcttcc cgtcgccgaa cccgtagggc caggtgaagg gcgcatggat
      901 gtgcccggag agcaccaggt ccaccttggc ccgcgtgaag tcccgcgccg ccgccggccc
      961 gccccagacc cgtgcggtca tcgggccgcc gatcatctcg gtcagcggat ggtggcaggc
     1021 gacaatgcgg atgcactcgc gatgcgagtc ctcgaaccag tcgacggcgg cggcgacctg
     1081 gcgcctggaa atctggccct tcgaccagtt gagccggggc tgggcgccgc gggcggtgtt
     1141 gaggccgcgc acggcgaaac cgccgcccag atgggtctgg gccgccgccg gcccgatggc
     1201 gtgctcgtag cggcggaacg gcgcgaagat ccgctcggcc caggcgagat agggggcgtc
     1261 gtggttgccg ggcgtcacga gcttgggcgc ttggatctgc gccagccagg cggcagcggc
     1321 ctcgaactcg gcgacctcgg cgtagcgggt caggtcgccg gtcaccacca ccaggtcgaa
     1381 ggcgccggcg ttcagcagct caatcgccgc ggccacggca ggcttgttct cgccgccgaa
     1441 gtggatatcg gacaggtgcg ccaggcggac ggtcatcagg tcctggcgtc cttggggatc
     1501 gccaggatgc gggcgacttt cttggtgtag cgcacctcgg ccagggtctt gagccgaacg
     1561 gactcgccat cgaggagcgc gggaatcccg tgggcggccc agattcgggc cacttggcag
     1621 cgggacacct cgacgcccgg cgtgtcgcgc cagtcgccgg tcacggcgtg cagccccacc
     1681 cgcatgatgt ccgccgcccc gttcacatcg aaggccgcag cctccagcgc actgtcgtcg
     1741 ttgtccagcg cgcgcgaggt gagcgggcac atgaacatca gcgcctcggc cttctcgcgc
     1801 gcagcgccgt ccaggatgta gcgcaaccgc ccgtggaagg tccggcgcat ggcgcggcgg
     1861 gcccggagcc aggcgagttt cgccttgccg aaccgcgccg cctcgcgggc cggcgcccac
     1921 agcgccggcg atcccaagat ggcggccacc aggaagctgt gcccctcgac ctcccccccg
     1981 ccgatcggcc gttcgtagcc ctggtcgagc gccagcttca gcgccgcttg ccaggggcgc
     2041 acgccgtaga tcgcacggga cagcatgttc atggtcccgc cgggcagggg cgcgatcatc
     2101 gggccgtccg gtccgcagag ctcggccgcc gcgcgcgccg tgccgtcgcc ggccagcacg
     2161 atcaagaggt cgggcgcgtt gtccaccgcg gcgcgcaggc attcggtcag gcggtgaggc
     2221 tccggcgcgt ggatggtggc ggcgagcccg cagtcggaga ggatcttctc gatctcggcg
     2281 ggcgcggtcg ggcccacact accggaggcg atattagcga tcacctcgac ctttttgacg
     2341 ccggtcatcg cccccaagcg cgtgctccta gccggggacg ccgttggcct tggccttcgc
     2401 cttgacgccg gcgtcgcgca gggactggcc ggcctggctg gcggcgtcgc gcacctgcgg
     2461 ctcggcgcgg ttgaccgcgg cgttcaggtt ctggtcggcc acgctgccgc cgccggcgaa
     2521 ggagccgttg atcgccgcca gcgccagcag cgccacgcca caagccgcgg cggcgaaggt
     2581 cagggtcatc atcacggggt ggcgcctgcg gctggcgcgc tcgtccttgc ggccacgctc
     2641 ataggcctcg cggacatcgg cctgcacttc ccgcaggtcg aactgttctg cccggttcag
     2701 ggatgcggtt cggtccgcct gatcaaggct tgcggggtcg aggcgtgcgc caaccatcga
     2761 agatctccgt tcaggactgc cctcctccaa cggcgggcgg cgcggcgagt tccggagaca
     2821 gccgtcagcg gcggcggttt ggggaactgg cgcagcggcc tcggcgtttt ggccgccagg
     2881 ggacagttag gagagcctaa aatgctgctc aaaccactca tcgccctcgc cggcgc
//
LOCUS       DATAJL010000623         2656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_36757,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000623 DATAJL010000000
VERSION     DATAJL010000623.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36757"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2656)
                     /locus_tag="VHN39_12025"
     CDS             complement(<1..>2656)
                     /locus_tag="VHN39_12025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2817119.1"
                     /translation="VVVTANYPGATAETLAETVATPLEEAINGVENMIYVSSSSTADG
                     VVTVTVTFRQGADVNQAQVLVQNRVSTAEPRLPDEVRQIGVTVRKNSPDLLLVATLAS
                     PDGSLSQQYLSNYATVQLLDRLNRLPGVGGARLFGGRDYNMRIWIDPERAANLNLTVD
                     EIIAAVHAQNAQVAAGGVGQPPFNRGGTAFQFSLQAKGRLTTPAEFGEVVVKRLPEGH
                     VIRLRDVARVELGAEDYSVEASLNGKPTVAIGITQLPGSNALSTADGVKRELAAASKD
                     FPPGLAYRIPYNPTDYIAASISAVEHTLFEAVLLVALVVIIFLQSWRAAIVPIIAIPV
                     SLIGSFAMLAAFGFSLNNLSLFGMVLAIGIVVDDAIVVVENVERLMEHEGLDARAAAH
                     KTMDEVSSALVAIALVLIGVFLPTVFIPGISGQFYRQFALTIIGSTAISCFVSLTLSP
                     AIAALVLKPRTAAAPARGWRGGLAGFSRAFNGAFDALADRYGRYTARAVRALALIGVV
                     YVCLIGLAGWRLTATASGFIPAQDQGYLIGVVQLPPGSSLQRTGAVMDRVQKIALANP
                     AVADTLAFAGLDGATLTNAPNAAAVFMAMKPKAERLDGDRVANQLRASLGVVTEGNVL
                     VIAPPPVRGLGTGGGYKMMIEDRGGIGLRPLEAVTDRMMAAANQTPGLTSNFTPFNTA
                     TPRLYADIDRERAEKLGVPVEGVFSTLGTYLGSTYINDFNFLGRTFRVTAQAEAPYRN
                     AAADVGRLRTRSDTGAMVPLASVMSLHNDSGPYRVVRYNLYPAAELQGDTAPGYSSGQ
                     SLTSMERLAAQTLPQGAAYEWTELAFQQKQAGATGAIAFGLAVIFVFLLLAAFYESLV
                     LPLAVILIVPMCLLAAILGVNLMRLDDNI"
BASE COUNT          422 a          851 c          992 g          391 t
ORIGIN      
        1 ggatattgtc gtcgagccgc atgagattga cgcccaggat cgccgccagc aggcacatcg
       61 gcacgatgag gatcaccgcc agggggagga ccaggctttc gtagaaggct gccagcagca
      121 ggaagacgaa gatgaccgcg aggccgaagg cgatcgcccc ggtcgcgccg gcctgcttct
      181 gctggaaggc cagctcggtc cactcgtagg cggccccctg cggcagggtc tgggccgcca
      241 ggcgctccat ggaggtcagg gactggccgc tggaatagcc gggcgcggtg tcaccctgga
      301 gctcggcggc cgggtagagg ttgtagcgca ccacccggta gggtccgctg tcgttgtgca
      361 ggctcatcac cgaagcgagg ggcaccatgg cgccggtgtc ggagcgcgtg cgcagccgtc
      421 cgacgtcggc ggcggcgttg cggtacgggg cctcggcctg ggcggtgacc cggaacgtcc
      481 ggcccaggaa gttgaagtcg ttgatatagg tcgagccgag ataggtcccc agcgtcgaga
      541 acacgccctc gaccggcacg ccgagcttct cggcgcgctc gcggtcgatg tcggcgtaga
      601 gccgcggcgt ggcggtgttg aacggagtga agttgctggt caggccgggg gtctggttgg
      661 cggcggccat catccggtcg gtgaccgcct caagcggccg caggccgatc ccgccacggt
      721 cctcgatcat catcttgtag ccgccgccgg tgcccaggcc gcggaccggc ggcggggcga
      781 tcaccaggac gttgccctcg gtgaccacgc ccaggctggc gcgcaactgg ttggcgaccc
      841 ggtcgccgtc gaggcgctcg gccttcggct tcatcgccat gaacaccgcc gcggcgttcg
      901 gggcgttggt cagggtcgcg ccgtcgaggc cggcgaaggc gagcgtgtcg gccaccgccg
      961 gattggcgag cgcgatcttc tgcacccggt ccatcaccgc gcccgtccgc tgcagggagg
     1021 atccgggcgg cagttgaacc acgccgatga ggtaaccctg gtcctgcgcc gggatgaagc
     1081 cgctggccgt cgccgtcagc cgccagccgg caaggccgat gaggcagaca tagacgacgc
     1141 cgatgagggc gagcgcgcga accgcccttg ccgtgtatct gccgtagcgg tcggcgagcg
     1201 cgtcgaaggc gccgttgaag gcgcgcgaga atccggccag gccgccgcgc cagccgcggg
     1261 ccggcgcggc ggcggtccgc ggcttcagga ccagggcggc gatggccggc gacagggtga
     1321 gggagacgaa gcaggagatc gcggtggagc cgatgatggt cagcgcgaac tggcggtaga
     1381 actggccgga gatgccgggg atgaagaccg tcggcaggaa aacgccgatc agcaccaggg
     1441 cgatggccac cagggcgctt gagacttcgt ccatcgtctt gtgggcggcg gcgcgggcgt
     1501 ccaggccttc gtgctccatc agccgctcga cgttctcgac caccacgatc gcgtcgtcga
     1561 cgacaatgcc gatcgccagc accatcccga acaacgacag gttgttgagg ctgaagccaa
     1621 acgcggccag catcgcgaag gagccgatca gcgagacggg aatggcgatg atcgggacga
     1681 tcgccgcccg ccagctctgc aggaagatga tgaccaccag cgcgaccagg agcaccgcct
     1741 cgaacagggt gtgctccacc gccgagatcg aggcggcgat gtagtccgtg ggattgtacg
     1801 ggatccggta ggcgagaccg ggtgggaagt ccttggatgc tgcggcgagt tcccgtttga
     1861 cgccatcggc ggtgctgagc gcgttggagc cgggaagctg ggtgatgccg atcgccaccg
     1921 tcggcttgcc gttgagcgag gcctcgacgc tgtaatcctc tgcccccagc tcaacgcggg
     1981 cgacatcgcg caggcggatc acgtggccct cgggcagtcg cttgacgacg acctcgccga
     2041 actccgccgg cgtcgtcagc cggcccttgg cctgcaggct gaactggaag gccgtgccgc
     2101 cgcggttgaa cggcggctgg ccgaccccgc cggccgcaac ctgcgcgttc tgggcgtgga
     2161 ccgcggcgat gatctcgtcg acggtgaggt tgaggttggc cgcgcgctca ggatcgatcc
     2221 agatccgcat gttgtagtcg cggccgccga agaggcgggc cccgccgacg ccgggcaggc
     2281 ggttgagccg gtcgagcagc tgcaccgtcg cgtagttcga gagatactgc tgtgaaagcg
     2341 agccgtccgg cgaggccagg gtggcgacca gcagcaggtc gggcgagttc ttgcggaccg
     2401 tgacgccgat ctgccgcacc tcgtcgggca agcgcggctc ggcggtcgac acccggttct
     2461 gcaccaggac ctgcgcctgg ttgacgtccg cgccctgccg gaaggtcacg gtgaccgtga
     2521 cgacgccgtc ggcggtcgac gatgaggaca cgtagatcat gttctcgacg ccgttgatcg
     2581 cctcctccag gggcgtggcg accgtctcgg cgagggtctc ggccgtggct cccgggtagt
     2641 tggcggtgac gacaac
//
LOCUS       DATAJL010000624         2362 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94796,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000624 DATAJL010000000
VERSION     DATAJL010000624.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2362)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2362)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2362
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94796"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..977
                     /locus_tag="VHN39_12030"
     CDS             <1..977
                     /locus_tag="VHN39_12030"
                     /inference="COORDINATES: protein motif:HMM:NF017931.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEX2817120.1"
                     /translation="PRPRGQGVIRLGFVYLLAGLMFAGFALFSAGDRANPKRFGNTAF
                     WGLTSLSFLAGDWLSDLGNGLLVLGLALLAGLGLLGRGQPTTTARDERIALSERFGNQ
                     LFVPALMLPLVVALGVLVLKPIQFGGVPLMDPKQATLISLAGAVIVGLALALILLRQP
                     LTSPLEEGRRLADTIGWAVLLPQFLAALGAVFALAGVGNQIGHLVTAYLPVDTRFAAV
                     AVYCVGMAAFTMLMGNAFAAFPVLTGGVAIPILVVHFGGNPAVIASIGMLSGFCGTLM
                     TPLAANFNLVPPALLEIPDRYAVIKAQIPTALLMLIVNTVLMYVLAFR"
     gene            958..1998
                     /locus_tag="VHN39_12035"
     CDS             958..1998
                     /locus_tag="VHN39_12035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEX2817121.1"
                     /translation="MSSPSASRLTLGLASQFARIALGHVTREYPNKLDHVLESPADAR
                     GPRDLHPIFYGSFDWHSCVHGYWLLASLLRREPSIPEAGAIRTLFDGAFTAENVAGEA
                     AYLKRASSRGFERPYGWAWLLKLQAELMAHDTPPSSANWAATHQPLASVFADRFREFL
                     PRAQYPIRTGVHSSTSFALALAQDYAAASGDAALTALFREKVRAWHLADRDAPAWEPS
                     GDEFLSATLMEAECLRRLLPPDEFAPWLRAFLPRATQRQPASLFTPATVSDRSDGKIA
                     HLDGLNFSRAWCWREIAATLPPGDPLAAIAEATAQEHIAASLPHVAGDYMGEHWLASF
                     ALLALTAGEAIG"
     gene            2180..>2362
                     /locus_tag="VHN39_12040"
     CDS             2180..>2362
                     /locus_tag="VHN39_12040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817122.1"
                     /translation="MKLCGQISVELNVGDYIEAADHQKRLEDILKLVRDAYPDATLAM
                     RERRQRKALPLTRAAPR"
BASE COUNT          324 a          858 c          740 g          440 t
ORIGIN      
        1 cgcctcgccc gcggggccaa ggcgtgatca ggctcggctt cgtctatctg ctggccggcc
       61 tgatgttcgc gggcttcgcg ctcttcagcg ccggcgaccg cgccaatccc aagcggttcg
      121 gcaatacggc cttctggggc ctgacgtcgc tgagcttcct ggctggagac tggctgagcg
      181 acctcggcaa cggccttctg gtgctgggac tggcgctatt ggctggtctc ggcctgctgg
      241 gccgcggcca gccaaccacc acggcgcggg atgagcggat cgcgctctcc gaacggttcg
      301 gcaaccagct cttcgtccca gccctgatgc tgcccctggt ggttgcgctc ggcgtgctgg
      361 tcctcaagcc catccagttc ggcggtgtcc cgctgatgga ccccaagcag gcgacgctga
      421 tctcgctggc cggcgcggtg atcgtgggtc tcgccctggc gctgatcctg ctgcgccagc
      481 cgctgacgag tccccttgag gagggtcgtc gcctcgccga caccatcggc tgggcggtgc
      541 tcctgccgca gttcctggcg gcgcttggcg cagtcttcgc gctggcgggc gtcggcaatc
      601 agatcggcca cctggtcacc gcatatctgc cggtggacac ccgcttcgcc gctgtcgccg
      661 tctactgcgt cggcatggcg gccttcacca tgctgatggg caacgccttc gccgcctttc
      721 cggtgctgac cggcggggtc gcgattccga tcctggtcgt ccacttcggt ggcaatccgg
      781 cggtgatcgc ctcgatcggc atgctgtcgg ggttctgcgg cacgctgatg acgccgttgg
      841 ccgccaactt caacctggtc ccgccggcgc ttctggaaat ccccgaccgc tatgcggtga
      901 tcaaggcgca gattcccacc gccctcctca tgctgatcgt caacacggtg ctgatgtatg
      961 tcctcgcctt ccgctagtcg gcttaccctt ggactcgcct cgcaattcgc ccgcatcgcg
     1021 ctgggccacg tgacgcgcga atatcccaac aagctcgacc atgtgctgga gagcccggcc
     1081 gacgctcgcg ggcctcgcga cctgcacccg atcttctacg gcagcttcga ctggcactcc
     1141 tgcgtccatg gctactggct tctggcgagc ctcctgcgcc gcgagccgtc aatccccgag
     1201 gccggcgcca tccggacgct gttcgacggg gcttttacgg ctgagaacgt ggccggcgag
     1261 gcggcctatc tgaagcgggc ttcgtcgcgt ggcttcgagc ggccctacgg ctgggcctgg
     1321 ctcctgaagc tgcaggccga gctgatggcg cacgatacgc ccccctcttc ggcaaactgg
     1381 gccgcgaccc accagccgct ggcctcggtc ttcgccgatc gtttccgcga gttcctgccc
     1441 agggctcagt acccgatccg caccggcgtc cattcctcca cgtccttcgc cctggcgctg
     1501 gctcaggact atgccgccgc ctcgggggac gccgcgctca ccgcgctctt ccgcgagaaa
     1561 gtgcgcgcct ggcacctcgc cgaccgcgac gcgccggcct gggagccctc gggcgatgag
     1621 ttcctctccg cgacgctgat ggaggccgag tgcctgcgca ggctgctgcc gccggacgag
     1681 ttcgcgccat ggctgcgcgc cttcctgccc cgcgccaccc agcgccagcc ggcgagccta
     1741 ttcacccccg ccaccgtctc ggaccgcagc gacggcaaga tcgcccatct cgacggactg
     1801 aatttctcgc gcgcctggtg ctggcgcgag atcgccgcca ccctgccccc gggcgatccc
     1861 ctggccgcga tcgccgaggc cacggcccag gagcacatcg ccgccagcct gccccacgtc
     1921 gccggcgact acatgggcga gcattggctg gcgtctttcg ccctgctggc gttgacggcc
     1981 ggcgaagcta ttggatagat tacagattct ccacaattcg gattaactct tcgtcacaat
     2041 cgagagttgc gctttttcag cgtcggctgt ccgaagaacg cggcgaatgt gcgcgccgcc
     2101 gcagtggatg acgtgaaaac cgcagccgtg acagcctacg attttcggca gtgagacacg
     2161 tttcctgtcg aggacgccta tgaagctctg cggtcagatc tccgtcgaac tgaatgtcgg
     2221 cgactatatt gaagccgccg atcaccagaa gcggctggag gatatcctca agctggttcg
     2281 cgacgcctac cccgacgcca cgctggcgat gcgtgagcgc cgccagcgca aggcgctccc
     2341 gctgacccgc gcagctcccc gc
//
LOCUS       DATAJL010000625         1574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_49537,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000625 DATAJL010000000
VERSION     DATAJL010000625.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49537"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            3..>1574
                     /locus_tag="VHN39_12045"
     CDS             3..>1574
                     /locus_tag="VHN39_12045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEX2817123.1"
                     /translation="MGVGVSWLYSVVAVLAPGAFPAALRSHEGSVPVYFEAAAVITVL
                     VLLGQVLELGARERTGGAIKALLNLAPKTARRIRDDGADEEVTLDLIHVGDRLRVRPG
                     EKVPVDGELIEGRVSIDESLVTGESMPVTKEAGAKVIAGSLNTTGSFVMRAEKVGADT
                     LLSRIVQMVAEAQRSRAPIQRMADRVSGWFVPAVLAVAAIAFAAWMVAGPEPRFAYAL
                     VAAVSVLIVACPCALGLATPMSIMVGVGRGAQAGVLIKNAESLERFEKIDTLVVDKTG
                     TLTEGRPAVTAIKVAPGFDEAELLRLAASLERSSEHPLADAILRAAKDRGLTLSEAED
                     FDSPVGKGVVGTVDGKHVVLGGARLMSEQGTDMAPLEAEAEVLRREGATAIFATVDGK
                     LAGLLGIADPIKDTTPEAVRALKADGVRLVMMTGDNRTTALAVAQRLGIDEVEAEVLP
                     EDKAKVVQKLRAEGRSVAMAGDGVNDAPALAAAEVGIAMGAGSDVAIESAGVTLLKGD
                     LQGIVRARRLSRAVMR"
BASE COUNT          218 a          537 c          594 g          225 t
ORIGIN      
        1 ccatgggggt tggcgtgagc tggctctaca gcgtcgtcgc cgtgctggcg ccgggcgcct
       61 tccccgccgc ccttcgcagt cacgaaggct ccgtgccggt ctatttcgag gccgccgcgg
      121 tgatcaccgt cctggtgctg ctgggccagg tgctggagct gggcgcccgc gagcggactg
      181 gcggggcgat caaggctctc ttgaacctcg cgccgaagac cgcgcgtcgc attcgcgacg
      241 acggcgccga cgaagaggtc acgctcgacc tgatccacgt cggcgaccgg ctgcgggttc
      301 gcccgggcga gaaggtcccg gtcgacggtg agctgatcga ggggcgggtc tccatcgacg
      361 agtccctggt caccggcgag tccatgcccg tcaccaagga ggccggcgcc aaggtcatcg
      421 ccggctcgct caacacgacc ggctcgttcg tcatgcgcgc ggagaaggtg ggcgccgaca
      481 ccctgctgtc ccgcatcgtg cagatggtgg ccgaggcgca gcgcagccgc gcgccgatcc
      541 agcggatggc cgaccgggtc tcgggctggt tcgtgccggc ggtgctcgcc gtcgccgcca
      601 tcgccttcgc ggcctggatg gtcgcggggc cagagccgcg cttcgcctat gccctggtcg
      661 ccgccgtctc ggtgctgatc gtcgcctgcc cctgcgcgct gggcctggcc acgcccatgt
      721 cgatcatggt cggcgtcggc cgcggcgcac aggccggcgt gttgatcaag aacgccgagt
      781 cgctcgagcg cttcgagaag atcgacaccc tggtggtcga caagaccggc accctgaccg
      841 aggggcggcc ggcggtgacc gcgatcaagg tcgcgcccgg tttcgacgag gccgagctgc
      901 tgcgcctggc ggccagcctc gaacggagca gcgagcaccc gttggccgac gcgatcctgc
      961 gcgccgcgaa ggaccggggc ctcaccctgt cggaggccga ggacttcgac tcgccggtcg
     1021 gcaagggcgt ggtcgggacc gtcgacggca aacatgtcgt cctgggcggg gcccggctga
     1081 tgtcggagca ggggacggac atggctccgc tggaagccga ggcggaggtc ctgcgacggg
     1141 agggcgcgac cgcgatcttc gccacggtgg acgggaagct ggccggcctg ctcggcatcg
     1201 ccgacccgat caaggacacg acgcccgagg ccgtgcgtgc gctcaaggcc gatggggtgc
     1261 gcctggtgat gatgaccggc gacaaccgca ccaccgccct ggcggtcgcc cagcgtcttg
     1321 ggatcgacga ggtcgaggcc gaggtgctgc cagaggacaa ggccaaggtc gtgcagaaat
     1381 tgcgcgccga gggccgctcc gtcgccatgg ccggcgatgg cgtcaacgac gcgcccgccc
     1441 tggccgccgc cgaggtgggc atcgccatgg gcgcggggtc cgacgtggcg atcgaaagcg
     1501 cgggcgtgac cctgctgaag ggagacctgc agggcatcgt ccgcgcgcgt cgtctatcgc
     1561 gcgcggtgat gcgc
//
LOCUS       DATAJL010000626         4732 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_60783,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000626 DATAJL010000000
VERSION     DATAJL010000626.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4732)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4732)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4732
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60783"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..249
                     /locus_tag="VHN39_12050"
     CDS             <1..249
                     /locus_tag="VHN39_12050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="haloacid dehalogenase"
                     /protein_id="HEX2817124.1"
                     /translation="TLLKGDLMGIVRARRLSQAVMSNIRQNLVFAFIYNVAGVPIAAG
                     VLYPTFHLLLSPQIAAGAMALSSVSVIGNALRLRAVKL"
     gene            343..678
                     /locus_tag="VHN39_12055"
     CDS             343..678
                     /locus_tag="VHN39_12055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817125.1"
                     /translation="MTQLLKILPLFAALVAAPALAAEPDPHAGHHPAVAADAAKPAAA
                     TADAKAGMHGCKMMDGKMMAESGASAGKGPDGKTMMDGKDMHCMPAPAAAKGADAPHD
                     HEHQDAAPK"
     gene            complement(695..2605)
                     /locus_tag="VHN39_12060"
     CDS             complement(695..2605)
                     /locus_tag="VHN39_12060"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2817126.1"
                     /translation="MRSAAVAVAGLILAGGLTAHAQPTSAPSPAQGAAAAEHGNGVMG
                     QFTGAGGDPVQGEKLYQQKCASCHDNPSGRIPAKETIANNTATFITQAMIEGVMAPMA
                     RGLTPHDMTSVAAYLSKRKEGGLGAGALEAPACTDKPAPFTLAGPAWNGWGNAETQAR
                     FQPNPGIKAADVPRLKLKWALSYAGSRNGQATVAGGRVFLTSASGAVYSLNAKTGCAY
                     WRFDVPGGSRSSITIGRLPGSKGRPRYAAYLTGWTQRTAYALDAATGKQIWKTRVTDQ
                     SEVQLTGSPVLHAGRLYVPVSSAEEAIAVDDTYECCKFRGAVAAVDAATGKKLWETFM
                     APEPKPFKTNAKGVQMYGPAGAAIWGAPTIDAKRGLLYVTTGDSYTDINVDKAEAVVA
                     MDLKSGAIRWANQLTKGDNYIIGCYPPNPRANCPTPAGPDYDFGVSPVLQTLKTGKQV
                     ILVGQKSSQVYALDPDARGKVIWEHRLSQGGALGGVEFGPASDGAAYYVGISDIFVPK
                     PSPGLYAFRIADGELLWSAPSPRLDCAWKTPFCNGAISQAVSAMPGVVFAGAMNGHFR
                     AYDAKTGKVVWDYDTAAAPVPTVSGKDAKGGVMDGAGATIAGGMVYVSSGYQDRSGAP
                     GIVLMAFSVDGK"
     gene            complement(2721..4145)
                     /locus_tag="VHN39_12065"
     CDS             complement(2721..4145)
                     /locus_tag="VHN39_12065"
                     /inference="COORDINATES: protein motif:HMM:NF005687.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX2817127.1"
                     /translation="MNSRPIWQWSAVETAAAIKGGRASVEAVVTAHVDRLHAANPALN
                     AVVVDMTDLALKAARAADRAQAEGAELGPLHGVPVTIKINIDVEGQANSNGVVAFAGN
                     IAPGDSAVAANLRGAGAIILGLTNTPEFSFRAFTDNPLHGLTLNPWDRAITCGGSSGG
                     AAASVAAGIGAIAHGNDIGGSLRGPANWNGVATIKPTQGRVPAFNPSAAVERPPMAQL
                     MSCQGPLAREVADVRLALEVMSRRDVRDPWWVPAPLLPAGSAGPVRVAIAKIPSDMTA
                     DPEIMAFVAEAARHLGQAGYEVSEVEVPDISVAWKLWADLLATEIATLQEAQMRSVAS
                     PDFLRALDGMIRMATILDAEAYMKAIAQRSRVLREWLAFLERYPLILAPVSVRRTPGV
                     NADLASNDAVGEILGHDMRFTAALSVLGLPVAVVPVGLLDGHPVGVQLIASRYREDIC
                     LDAAAAIEARVGVLARKLWARESA"
     gene            complement(4345..>4732)
                     /locus_tag="VHN39_12070"
     CDS             complement(4345..>4732)
                     /locus_tag="VHN39_12070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817128.1"
                     /translation="PKDGPNGVTSGEEPRKVHGVVDVAVGSNGYRSAYVRSDLPVGKT
                     GTLSIAVGETRFNGRSGNGYGGRFGGGQSQSLGLGLSLGGDAALDPRDPRCRQFGEER
                     PSLASDQRFEGGRPRACSTAGSQTSP"
BASE COUNT          697 a         1649 c         1653 g          733 t
ORIGIN      
        1 accctgctca agggcgatct gatggggatc gtccgcgccc gccggctgtc tcaggcggtg
       61 atgtcgaaca tccgccagaa cctggtcttc gccttcatct acaatgtggc cggcgtgccg
      121 atcgccgcgg gcgtgctcta tccgaccttc cacctgctgc tctcgccgca gatcgccgcg
      181 ggagccatgg cgctgtcgtc ggtcagtgtg atcggcaatg cgcttcggct tcgcgcggtg
      241 aaactctgag gctggcgcgt cagctcggtt gattccgatc aaggcggagg gccgcgcttc
      301 ctcggaagct ggagctcaat tcctcaagga tgtctcctga ccgtgaccca gctcctcaag
      361 attctgccgc tcttcgccgc cctcgtcgca gccccggccc tcgccgccga gcccgatccc
      421 cacgctggac accaccccgc ggtcgctgcg gacgccgcca agcccgcggc cgccaccgcc
      481 gacgccaaag ccggcatgca cggctgcaag atgatggacg gcaagatgat ggccgaatcc
      541 ggcgcctcgg cgggcaaggg tcccgacggc aagacgatga tggatggcaa ggacatgcac
      601 tgcatgcctg cgccggccgc cgccaagggc gcggatgcgc cgcacgatca cgagcatcaa
      661 gacgccgcgc cgaagtagat cgagagccgg tcgcctattt cccgtccacc gagaaggcca
      721 tcagcacgat cccgggcgcc cctgaacggt cctggtagcc cgagctgaca tagaccatgc
      781 cgccggcgat ggtcgccccg gcgccgtcca tgaccccgcc cttggcgtcc ttgcccgaaa
      841 cggtcggcac gggcgcggcg gcggtgtcgt agtcccagac caccttgccg gtcttggcgt
      901 cgtaggcgcg gaaatggccg ttcatggcgc cggcgaagac cacgcccggc atggcgctga
      961 cggcctgcga gatggcgcca ttgcagaaag gggtcttcca ggcgcagtcg agcctggggc
     1021 tgggcgccga ccacaggagt tccccgtcgg cgatccggaa ggcgtagagc cccggcgacg
     1081 gcttcggcac gaagatgtcg gagatgccga cgtaataggc cgccccgtcc gaggccgggc
     1141 cgaattcgac gccgccgagg gccccgccct ggctcagccg gtgctcccag atcaccttgc
     1201 cccgggcgtc gggatccagc gcatagacct ggctcgattt ctgcccgacc aggatcacct
     1261 gcttgccggt cttgagcgtc tgcaggaccg gcgagacccc gaagtcatag tcgggcccag
     1321 cgggcgtagg gcagttggcg cgggggttcg gcgggtagca gccgatgatg tagttgtcgc
     1381 ccttggtgag ctggttggcc cagcggatgg cgccggactt caggtccatg gccaccaccg
     1441 cctcggcctt gtcgacattg atgtcggtgt agctgtcgcc ggtggtcaca tagagcaggc
     1501 cgcgcttcgc atcgatggtc ggcgcgcccc agatcgcggc gccggcaggg ccgtacatct
     1561 gcacgccctt ggcgttggtc ttgaagggct tcggctcggg agccatgaag gtctcccaaa
     1621 gcttcttgcc ggtcgccgca tcgaccgccg ccaccgcgcc gcggaacttg cagcactcgt
     1681 aggtgtcgtc gaccgcgatg gcctcctcgg cggaagacac cggcacatag aggcgcccgg
     1741 cgtgcagcac cggcgagccg gtcagctgca cctccgactg gtcggtgacc cgggtcttcc
     1801 agatctgctt gccggtcgcc gcgtccagcg cataggcggt ccgctgggtc cagcccgtga
     1861 ggtaggcggc gtagcgcggc ctgccttttg agccaggaag cctgccgatg gtgatcgagc
     1921 tgcgcgaacc gcccggcacg tcgaagcgcc agtaggcgca gccggtcttg gcgttcagcg
     1981 agtagaccgc tccggaggcc gaggtgagga agacacggcc gcccgccacc gtcgcctggc
     2041 cgttacggct gccggcatag gagagcgccc acttcagctt caggcgcggg acgtcagcgg
     2101 ccttgatccc cgggttgggc tggaagcgcg cttgcgtttc cgcattgccc cagccgttcc
     2161 aggccgggcc cgcgagagtg aagggggcgg gcttgtccgt gcaggccgga gcctccagcg
     2221 cgccggcccc cagcccgccc tccttgcgct tggacaggta ggccgccacc gaggtcatgt
     2281 cgtgaggcgt caggccacgc gccatcggcg ccatcacccc ttcgatcatg gcctgggtga
     2341 tgaaggtcgc ggtgttgttg gcgatggtct ccttggccgg gatgcggccc gaggggttgt
     2401 cgtgacagct ggcgcatttc tgctggtaga gcttctcgcc ctggaccggg tcgccgccgg
     2461 cgccggtgaa ctggcccatt acgccattgc catgctcggc ggcggccgcg ccctgcgcag
     2521 gcgacggggc ggaggttggc tgggcgtggg cggtcaggcc gcccgccagg atcaggccgg
     2581 cgaccgcgac ggccgcgctg cgcatcgatt tcatcgtgat ccccacgttg atgaactagt
     2641 ctgcatcata aactagaacg cataaagcac agggccacga tgcgcggcaa ggggctattc
     2701 ggccagggcc gtcgtggggt ctaggcgctc tcccgcgccc ataacttgcg ggccagcacg
     2761 ccgacccggg cctcgatcgc cgcggcggcg tccaggcaga tgtcctcgcg gtagcgcgag
     2821 gcgatcagct gcacgccgac cgggtgcccg tcgaggaggc ctacggggac cacggccacc
     2881 ggcaggccga gcacgctgag cgcggcggtg aagcgcatgt cgtggccaag aatctcaccc
     2941 accgcgtcgt tgctggcgag gtcggcgttg acgcccggcg tccgcctgac cgagaccggc
     3001 gccaggatca gcggatagcg ttcgaggaac gccagccatt ccctgagcac gcgcgagcgt
     3061 tgggcgatcg ccttcatata ggcctcggcg tcgaggatcg tcgccatccg gatcatgccg
     3121 tccagagcgc gcaggaagtc cgggctggcg accgaccgca tctgcgcctc ctgcagggtg
     3181 gcgatctcgg tggccagcag gtcggcccaa agcttccagg ccacggagat gtcggggacc
     3241 tcgacctcgc tcacctcgta gccggcctgg cccagatggc gggcggcctc ggcgacgaag
     3301 gccatgatct ccgggtcggc cgtcatgtcc gaggggatct tcgcgatcgc gaccctgacc
     3361 ggaccggccg atccggcggg cagcaggggc gccggaaccc accaggggtc gcgcacatcg
     3421 cggcggctca tcacctccag cgccaggcgg acatcggcca cctcgcgggc cagcggcccc
     3481 tggcacgaca tcagctgggc catgggaggc cgctcgacgg cggcgcttgg gttgaaggcc
     3541 ggcacgcggc cctgggtcgg cttgatggtg gccacgccgt tccagttggc gggcccacgc
     3601 agcgagccgc cgatgtcgtt gccgtgggcg atggcgccga tgccggcggc cacggaggcc
     3661 gccgcgccgc cggatgaccc gccgcaggtg atcgccctgt cccagggatt gagggtcagg
     3721 ccgtgcagcg gattgtcggt gaaggcgcgg aacgagaact ccggcgtatt ggtcagtcca
     3781 aggatgatgg cgccggcgcc cctcaggttg gcggccacgg ccgagtcgcc aggggcgatg
     3841 ttgcccgcga aagccacgac accgttggaa ttagcctggc cctccacgtc gatgttgatc
     3901 ttgatcgtca ccggaacgcc gtgcaggggg ccaagctcgg cgccctcagc ctgcgcccgg
     3961 tcggcggcgc gggcggcctt gagcgccagg tccgtcatgt cgacgaccac ggcgttgagc
     4021 gccggattgg ccgcgtgcag acgatcgacg tgggctgtca cgaccgcctc gaccgacgcg
     4081 cgcccgccct tgatcgccgc cgcggtttca accgccgacc attgccagat gggtcttgaa
     4141 ttcatcgcac ccctcgcggg gcggcgcgcc cctcagggtc cccagcctgc acgaacggga
     4201 ccttctcgaa cagtcgtcgt tcggcgccgc gcggatcgtc ggccgtgggc cacaccggcc
     4261 gggaggtccg ggtgggcttc cgctacacct actaaggcga gctacggtga gctcggcgcc
     4321 tctgtcgctg ggcaggcgcc caccctaagg cgaagtttgc gagcccgccg tagagcaggc
     4381 gcgcgggcga ccgccctcga accgctgatc ggacgcaagg ctcggccgtt cctccccgaa
     4441 ctgccggcag cgcggatccc gcggatcgag ggcggcgtcg ccgcccaggc tcaggcccag
     4501 acccaggctc tggctctggc cgccgccgaa gcggccgccg tagccgttcc cggaacgtcc
     4561 gttgaagcgg gtctcgccca ccgcgatgct cagcgtcccg gtcttgccaa ccggcaggtc
     4621 gctgcggaca taggcgctgc ggtagccgtt cgatcctacc gccacgtcga ccacgccatg
     4681 gaccttgcgg ggctcctcgc cggaggtgac gccgttcggc ccgtccttgg gg
//
LOCUS       DATAJL010000627         3943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_60809,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000627 DATAJL010000000
VERSION     DATAJL010000627.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3943
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60809"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..432)
                     /locus_tag="VHN39_12075"
     CDS             complement(<1..432)
                     /locus_tag="VHN39_12075"
                     /inference="COORDINATES: protein motif:HMM:NF020804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit Rsm22 family protein"
                     /protein_id="HEX2817129.1"
                     /translation="MSPDLPGPLRAALDRALEGVPRKGLAERAARTSEAYRAGQPSSG
                     VIRDADDALAYALTRLPATYAACATVLAGAARMAPGFAPRSLLDAGAGTGAASWAAVA
                     LWPGLASLTWLDASPPFLALAAKFAAEGPPALRAAEARRVDI"
     gene            complement(429..1001)
                     /locus_tag="VHN39_12080"
     CDS             complement(429..1001)
                     /locus_tag="VHN39_12080"
                     /inference="COORDINATES: protein motif:HMM:NF015331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2817130.1"
                     /translation="MRALLLIAALLASTPARAFDLPERAQAQLDRGRPYVEVRPDADG
                     SSGVIFAAIDVAAPQGVVWSVMTDCDLATKMVANLKSCRILERDPQGRWDIREEVTGS
                     TFTPSVRTVYREDFEPIRRMSFRRTGGDLKLFEGEWRLEPHGDRVRVTYEARVAAPFS
                     VPGWVARLALRHDVPMALLALRREAMARAQ"
     gene            complement(1042..3381)
                     /gene="acs"
                     /locus_tag="VHN39_12085"
     CDS             complement(1042..3381)
                     /gene="acs"
                     /locus_tag="VHN39_12085"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEX2817131.1"
                     /translation="MSDNEVFPVPAAWAKNALMTAAGYETAMARVEADPDGYWTDVAK
                     RLDWMTPFTQVKDVSFDAKDFRVRWYADGVLNVSVNCIDRHLPHRADQTAIIWESDDG
                     SIGDTITYGQLHAEVCRMANVLKAKGVQKGDRVTIYLPMIPQAAYAMLACARIGAIHS
                     VIFGGFSPDSIAGRIQDCSSKIVVTADEGLRGGKPVPLKKNVDEALQSCPGVTDVIVV
                     RRTRGDVPMTEGRDVFYSDIKATVSDQCDPEPMNAEDPLFILYTSGSTGKPKGVLHTT
                     GGYLTWAAHTHELVFDYRPGEVFWCTADVGWVTGHSYVVYGPLANAATTVMFEGVPNY
                     PTASRFWEVCDKHKVEIFYTAPTAIRALMREGDEPVKRTSRSTIRLLGTVGEPINPEA
                     WLWYHRVVGEGRCPIVDTWWQTETGACLMSPLPGAMPLKPGSCAKPLPGVKPQLVDAD
                     GKLLEGAVSGNLCLTDAWPGMMRTVYGDHERFITTYFTTYPGKYFTGDGARRDADGYY
                     WITGRVDDVINVSGHRLGTAEIESALVGHPAVAEAAVVGYPHEIKGQGIYCYVTLKAD
                     VQASPALEPELRNWVRREIGPFASPDVIQFAPGLPKTRSGKIMRRILRKVAEGDIANL
                     GDTSTLADPAVVDDLVRNRADDSAPDILVIGGHKVGADEIERVLEGQESVLEAAIVGF
                     ATPEGEAVYAFVVVAADVRATDILEAELKGVVRREVGPAASPRSIHFVSALPRTHAGH
                     LARRILRKVAAKDVGNLGDPGALANPAVLDELLTTPAAT"
     gene            3509..>3943
                     /locus_tag="VHN39_12090"
     CDS             3509..>3943
                     /locus_tag="VHN39_12090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817132.1"
                     /translation="MQTRILVVALSALALALGACAGGTKTEASKDVAGFLDAVRRGDR
                     AAFNAGVNRVEVRSDLREQVKELARLKGVEVDGGPSEFAIDRMIAPEAFHLVEARTGQ
                     PLTAAPTADQVARMLKVRNSTRVCLDDATTHACRVTFAKRDGG"
BASE COUNT          582 a         1370 c         1392 g          599 t
ORIGIN      
        1 gatgtcgaca cggcgagcct cggcggcccg cagagccggc ggcccctcgg cggcgaactt
       61 cgcagcgagc gcgaggaagg gcgggctggc gtcgagccat gtaagcgatg ccagcccggg
      121 ccatagcgct accgccgccc aactcgccgc gcccgttccg gcgccggcgt cgagcaggct
      181 cctgggggcg aagcccggcg ccatccgggc ggccccggcg agcacggtgg cgcaggcggc
      241 ataggtggcg ggcaggcggg tgagcgcgta ggccagggcg tcgtccgcgt cccggatcac
      301 cccggacgag ggctggcccg cgcggtaggc ctcagacgtc ctcgccgcac gctcggcgag
      361 ccccttgcgc ggcacgccct ccagggcgcg gtcgagggcc gcgcgcagag gccccggcag
      421 atcggggctc attgtgcgcg cgccatggcc tcgcggcgca gcgccagcag agccattggc
      481 acgtcgtggc ggagcgccag cctggccacc cagccgggca cggaaaacgg cgcggcgacc
      541 cgggcctcat aggtcacccg cacccggtcg ccgtgcggct ccagccgcca ctcgccttcg
      601 aataacttca ggtcgccgcc ggtgcgtcgg aagctcatcc gacgaatggg ctcgaaatcc
      661 tcccggtaga cggtgcgcac cgagggcgtg aaggtggacc ccgtgacctc ctcgcggatg
      721 tcccagcgcc cttgcgggtc acgctccagg atgcggcagc ttttcagatt ggcgaccatc
      781 ttcgtcgcca ggtcgcagtc ggtcatcacg ctccagacca cgccttgagg ggccgccacg
      841 tcgatggccg cgaagatcac gcctgaggat ccgtccgcgt cgggcctgac ctccacatag
      901 ggccgccccc ggtccagctg tgcctgcgcc ctttccggca ggtcgaaggc ccgcgccggc
      961 gtgctggcca gcagggccgc gatcagcagc agggcgcgca tgtggccgat ttcccgcggc
     1021 ccgatttccc gcggaggtgg ctcacgtcgc ggccggcgtc gtcagcagct catcgagcac
     1081 ggccgggttc gccagcgcgc ccggatcgcc gagattgccg acgtccttgg ccgccacctt
     1141 gcgcagaatc cgccgcgcca ggtggccggc gtgggtgcgt ggcagggcgg agacgaaatg
     1201 aatgcttcgc ggcgaggcgg ccggaccgac ctcgcgccgc acgacgcctt tcagctcggc
     1261 ctccagaatg tcggtcgccc tgacgtcggc ggcgaccacc acgaaggcgt agacggcctc
     1321 gccctccggc gtcgcgaacc cgacgatggc ggcttccagc acgctctcct gcccctcgag
     1381 cacccgctcg atctcgtcgg cgccgacctt gtggccgccg atgaccagaa tatccggcgc
     1441 gctgtcgtcg gcgcggttgc gcaccaggtc gtcgaccacc gccgggtcgg ccagggtcga
     1501 ggtgtcgcca agattggcga tgtcgccctc agccaccttg cgcaggatgc ggcgcatgat
     1561 cttgcccgag cgggtcttgg gcaggccggg cgcgaactgg atcacgtcgg gcgaggcgaa
     1621 ggggccgatc tcgcgccgca cccagttgcg aagctcgggt tcaagcgcgg gcgaggcctg
     1681 cacgtcggcc ttcagggtca cgtagcaata gatgccctgg cccttgatct cgtgcggata
     1741 gccgaccacc gcggcctcgg cgacggccgg gtggcccacc agagcgctct cgatctcggc
     1801 ggtccccagc cgatgtccgg agacgttgat cacgtcgtcc acgcggccgg tgatccagta
     1861 gtagccgtcc gcgtcgcgcc gggccccgtc gccggtgaag tacttgccgg gataggtggt
     1921 gaagtaggtg gtgatgaacc gctcgtggtc gccatagacc gtgcgcatca tcccgggcca
     1981 ggcgtcggtg aggcagagat ttccgctcac tgcgccctcc aatagtttgc cgtcagcgtc
     2041 cacaagctgc ggcttcaccc cgggcagggg cttggcgcag gagccgggct tcagcggcat
     2101 cgcgcccggc aaggggctca tcaggcaggc gccggtctcg gtctgccacc aggtgtcgac
     2161 gatcgggcag cggccctcgc ccaccacgcg gtggtaccag agccaggcct ccggattgat
     2221 cggctcgccc accgtgccca ggaggcggat cgtgctgcgc gaggtccgct tcaccggctc
     2281 gtcgccctcg cgcatcaggg cgcggatcgc cgtcggcgcc gtgtagaaga tctcgacctt
     2341 gtgcttgtcg cagacctccc agaaccgcga ggcggtcggg tagttgggca caccctcgaa
     2401 catcaccgtg gtcgccgcat tggcgagtgg cccatagacc acatagctgt ggccggtgac
     2461 ccagcccacg tcggcggtgc accagaagac ctcgccaggc cggtaatcga acaccagctc
     2521 gtgggtgtgg gccgcccagg tcaggtagcc gccggtggtg tgcagcacgc ccttgggctt
     2581 ccccgtcgag ccggaggtgt agaggatgaa gagcgggtcc tcggcgttca tcggctcggg
     2641 atcgcactgg tcggagaccg tggccttgat gtcggaatag aagacgtcac ggccctcggt
     2701 catcggcacg tcgccccggg tgcggcgcac gacgatcacg tcggtgacgc ccgggcagga
     2761 ttgcagcgcc tcgtcgacgt tcttcttcag cggcacgggt ttgccgcccc gcaggccttc
     2821 gtcagcggtg acgacgatct tcgatgagca gtcctggatg cgcccggcga tcgagtccgg
     2881 cgagaagccc ccgaagatca ccgaatggat cgccccgatc cgcgcgcagg ccagcatggc
     2941 gtaggccgcc tgggggatca tcggcaggta gatggtgacc cggtcgccct tctggacgcc
     3001 cttggccttc agcacattgg ccatacggca gacttcggcg tgcagctggc cgtaggtgat
     3061 ggtgtcgccg atggagccgt cgtcgctttc ccagatgatc gcggtctggt cggcgcgatg
     3121 cggcaggtga cggtcgatgc agttgaccga gacgttcaag acaccgtcgg cataccagcg
     3181 gacccggaag tccttggcgt cgaaggagac gtccttcacc tgcgtaaacg gggtcatcca
     3241 gtcgagccgc ttggccacgt cggtccaata gccgtcgggg tcggcctcga cgcgggccat
     3301 ggcggtctca tagccggccg cggtcatcag ggcgttcttc gcccaggcgg cgggaaccgg
     3361 aaacacctcg ttgtcggaca cctgagctac tcccggagac ttctttggat ggagtatgcg
     3421 tagaggccgc cccggcgcaa caactgccgc ccgtgaagct tgcgtggcaa gcttgccgga
     3481 ttgggcgggc gcggccatgg tcggcgccat gcaaacccgg atccttgtgg tcgccctttc
     3541 ggcgctggcg ctcgccctcg gcgcctgcgc gggcggaacg aagaccgagg cgtcgaagga
     3601 cgtggcgggc tttctcgacg ccgtgcgccg gggcgaccgg gccgccttca acgccggcgt
     3661 gaaccgggtg gaggtgcgct cggacctgcg cgaacaggtc aaggagctcg cgcgtctgaa
     3721 gggcgtcgag gtggacggcg ggccctcgga attcgccatc gaccggatga tcgcgcccga
     3781 ggccttccat ctggtggagg cgcgcaccgg ccagccgctg accgccgcgc ccaccgcgga
     3841 ccaggtcgcc cggatgctga aggtgcgcaa ctccacccgc gtctgcctcg acgacgccac
     3901 cacccacgcc tgccgcgtca cctttgcgaa gcgcgacggg ggc
//
LOCUS       DATAJL010000628         2261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_120456,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000628 DATAJL010000000
VERSION     DATAJL010000628.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120456"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..451
                     /locus_tag="VHN39_12095"
     CDS             <1..451
                     /locus_tag="VHN39_12095"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2817133.1"
                     /translation="FNGRNFNWTVSGSAAQTIFAGGANIANLSLAKGQRQLAVAQYQQ
                     AIQTAFREVADALARRGTIADQLTAQNNLVGDATDELALATARYREGIDPFLNTLEAQ
                     RILYAARQTLASARLTRADNLVTLYRTLGGDQLIDGAPAAGGRTAAQ"
     gene            535..1740
                     /locus_tag="VHN39_12100"
     CDS             535..1740
                     /locus_tag="VHN39_12100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2817134.1"
                     /translation="MADFGGDLELEDFRAEARAWLEANFPSSLAGKGAQAMSERQGQS
                     ADLGAWRKAIGEKGWATPTWPTQYGGGGLSPAQARVLGQEMAKVQAFNPLLFGMGVTM
                     IGPTILDYGTEAQKAQHIPPIVRGDVQWCVGYSEPNAGSDLASLQTKAVDAGDHWTIN
                     GQKTWTSGAQYSDWCGLLTRTDPSAKKHDGISFMLVDMHQPGIETRPIALIAGASPFC
                     ETFFTDAVAPKDALLGQLNVGWTVGKRLLQHERASQTGAIGGGRTVPLNQLAKRYVAV
                     DADGRIEDQDLRTRLVCHEMDAKVHGLTLARVMAESREANGATNGASVLKNSATHVAQ
                     TRAELTLEIMGAQGLGWQGDDFTREEIETVRGWLSGKAMSIYGGSFEIQNNIISKRIL
                     GLPDNTQST"
     gene            1847..>2261
                     /locus_tag="VHN39_12105"
     CDS             1847..>2261
                     /locus_tag="VHN39_12105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEX2817135.1"
                     /translation="MRLWTWTVALVAAAAMAGCATTTEPAKGPAKTADASPPAKAKPL
                     PPGLDPLVHADAFPSTYKPMPSHPTAIVGAHVFTGTGQLIDNGVVLVKDGRIEAVGPG
                     LAVPAGYETVDGAGKWVTPGLIDAHSHLGVYASPSV"
BASE COUNT          383 a          856 c          716 g          306 t
ORIGIN      
        1 cttcaacggc aggaacttca actggacggt gtccggctcg gcggcccaga cgatcttcgc
       61 cggcggcgcc aacatcgcca acctgtccct cgccaagggc cagcggcaac tggccgtggc
      121 ccagtaccag caggcgatcc agacggcctt ccgcgaggtg gccgacgcgc tcgcccgtcg
      181 cggcacgatc gccgaccagc ttacggccca gaacaacctg gtgggcgacg ccaccgacga
      241 actggctctg gccacggccc gttatcgcga ggggatcgat cccttcctga acaccctgga
      301 agcccagcgc atcctctatg cggcccgcca gacgctggcc tcggcgcgcc tcacccgcgc
      361 tgacaacctc gtgaccctct accgcaccct gggcggcgac cagctgatcg acggcgcgcc
      421 cgcggccggc ggcaggaccg ccgcgcagta gccgccgctt cacctagggg cacgcttgtc
      481 gccggctccg ggcggactag actgcgccag gcagaccaac cagggagaag caacatggcg
      541 gacttcggag gcgacctcga gcttgaggac ttccgcgccg aggcgcgcgc ctggctggag
      601 gcgaacttcc cctcatccct ggccggcaag ggcgcccagg ccatgtcgga gcggcagggc
      661 cagagcgcag acctcggggc ctggcgcaag gccatcggcg agaagggctg ggcgacgccg
      721 acctggccga cccaatacgg cggtggcggc ctttcgcccg cccaagcccg ggtcctgggt
      781 caggagatgg ccaaggtcca ggccttcaac ccgctgctct tcggcatggg cgtcaccatg
      841 atcggcccga cgatcctcga ctacgggacc gaggcccaga aagcccaaca catcccgcct
      901 atcgtccgcg gcgatgtgca gtggtgcgtc ggctattccg agcccaacgc cggctccgac
      961 ctcgcctcgc tgcagaccaa ggccgtcgac gctggcgacc actggacgat caacggccaa
     1021 aagacgtgga cctcgggcgc gcaatactcc gactggtgcg gcctgctgac ccgcaccgac
     1081 ccctcggcga agaagcacga cggcatctcc ttcatgctgg tcgacatgca tcagcccggc
     1141 atcgagaccc ggcccatcgc gctgatcgcc ggagcctcgc ccttctgcga gaccttcttc
     1201 accgacgccg tcgcccccaa ggacgccctg ctcggacagc tgaatgtggg ctggaccgtg
     1261 ggcaagcgcc tgctgcagca cgagcgcgcc agccagaccg gcgccatcgg cggcggccgc
     1321 acggtcccgc tgaatcagct cgccaaacgc tatgtcgccg tcgacgccga cggccgtatc
     1381 gaggaccagg acctgcgcac ccgcctcgtc tgccacgaga tggacgccaa ggtccacggc
     1441 ctgacgctgg cccgggtcat ggccgagtcc agggaagcca atggcgccac caacggcgcc
     1501 tcggtcctga agaactccgc cacccatgtc gcccagaccc gcgccgaact gacgctggag
     1561 atcatgggcg cccagggcct cggctggcag ggcgacgact tcacccgcga ggagatcgag
     1621 accgttcgcg gctggctctc cggcaaggcc atgtcgatct acggcggctc cttcgagatc
     1681 cagaacaaca tcatctccaa gcgcatcctg ggcctgccgg acaacaccca gtcgacctga
     1741 aacgggcgcc gaacgccggt ccctgagaat ctccggccga gcctgtttac gcgagcgccg
     1801 gcttgcgcct atcgtccgcc ctcgtttcgg gatggggcct aatttcatgc gcttatggac
     1861 gtggacggtc gcgctggtcg cggctgcggc gatggcgggg tgcgccacca caacggagcc
     1921 cgccaaaggg cccgcgaaga ccgccgatgc gagcccgccc gccaaggcca agcccctgcc
     1981 gcccggcctc gaccccttgg tccatgccga cgccttcccg tcgacctaca agcccatgcc
     2041 gagccatccg acggccatcg tcggcgccca tgtcttcacc ggcacgggcc agctgatcga
     2101 caacggcgtg gtgttggtga aggacggcag gatcgaagcc gtcggcccgg gcctcgcggt
     2161 ccccgccggc tacgagaccg tcgacggcgc cggcaagtgg gtcacccccg gcctgatcga
     2221 cgcccactcg cacctgggcg tctacgcctc ccccagcgtc t
//
LOCUS       DATAJL010000629         2208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_10990,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000629 DATAJL010000000
VERSION     DATAJL010000629.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10990"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..651)
                     /locus_tag="VHN39_12110"
     CDS             complement(<1..651)
                     /locus_tag="VHN39_12110"
                     /inference="COORDINATES: protein motif:HMM:NF013696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2817136.1"
                     /translation="MDAKALNTFTADLWDREITPALVEYIRIPAKSPAFDADWAAHGF
                     IDQAVEHMAGWVRGKIADLPGATLEIVRLEGRTPVIFIEAPGDASSEIGDDTVLLYGH
                     LDKQPEMTGWSQGLGPWEPVIRDDRLYGRGGADDGYAIYASVAALLALQAQNVKRARC
                     VVLIEACEESGSFDLPFYVDHLADRIGSPSLVICLDSGCGNYEQLWLTTSLRGMTGG"
     gene            827..1039
                     /locus_tag="VHN39_12115"
     CDS             827..1039
                     /locus_tag="VHN39_12115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817137.1"
                     /translation="MITLKDLVNGGSASLVIICAALAGHYIAEGMSLVQWAGAVCAVL
                     GSVTVAVAVRVWPTPAKAKAPQRQRD"
     gene            complement(1043..1795)
                     /locus_tag="VHN39_12120"
     CDS             complement(1043..1795)
                     /locus_tag="VHN39_12120"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX2817138.1"
                     /translation="MAGADPDLAAGASLADADLSNLDWSERDLADIKLTSCTVTDAQL
                     SAVMLQGARFTECRFLRCRFAHADLREATFVRCNFADPDSHSGVQIAFSQLDQASFEA
                     CDLSFADIERTSAWSVAFKDTNLRGARFHRADFARALSPKAIHTSAAFLRCNLELADL
                     SDASLKGCDLTGSSLREADLTDADLSGADLKGCDLFQALTTGAKLDGADLRGAEVSGL
                     DLSALAGHAGMKITLSQQQALLSAMGLDVYAD"
     gene            complement(1805..>2208)
                     /locus_tag="VHN39_12125"
     CDS             complement(1805..>2208)
                     /locus_tag="VHN39_12125"
                     /inference="COORDINATES: protein motif:HMM:NF008741.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HEX2817139.1"
                     /translation="PSPRPGERLMRLILNVLWFICGGWISGTLWIIAGCVFALTIVGL
                     PWVPAAFRIAGFSYAPFGKTAIPYDMGVGSGLLNILWLIFAGWWLALHHLIIAVVQAV
                     TIIGIPFALQHLKLAGLSLAPVGVEVVETYY"
BASE COUNT          361 a          693 c          819 g          335 t
ORIGIN      
        1 cccgccggtc atgccgcgca gcgaggtggt cagccagagc tgttcgtagt tcccgcagcc
       61 gctatcgagg cagatcacca gggagggcga gccgatgcgg tcggccagat ggtcgacgta
      121 gaacggcagg tcgaaggagc ccgactcctc gcaggcctcg atcagcacca cgcagcgcgc
      181 gcgtttgacg ttctgggcct ggagcgccag cagggccgcc accgaggcgt agatggcgta
      241 gccgtcgtcg gcgccgccgc ggccatagag cctgtcgtcg cggatcaccg gctcccaggg
      301 gccgaggccc tgcgaccagc cggtcatctc cggctgcttg tccaggtggc cgtagagcag
      361 gacggtgtca tccccaattt cagaagatgc gtcgcccggg gcctcgatga agatcaccgg
      421 cgtgcggccc tccaggcgga cgatctccag ggtcgcgccg ggcaggtcgg cgattttgcc
      481 gcggacccag ccggccatgt gctcgacggc ctgatcgatg aagccgtgcg ccgcccaatc
      541 ggcatcgaag gccggggatt tggccgggat gcggatgtac tcgaccagcg ccggggtgat
      601 ctcgcggtcc cagaggtcgg cggtgaaggt gttgagggcc ttggcgtcca tggctgggtg
      661 ctcggggtaa gagtcaggtt ggggtcaggt cggatcggga tttcctatag cagccggacc
      721 gtgcgcccca atgccgcatc gcgggctggg gaagggtttc ggtaaaggtc aggcgtctta
      781 gtgggcctcg ccatttcgcc cgcacgccgc atccagggac tccgccatga tcaccttaaa
      841 agacctcgtc aacggagggt ccgcctcact ggtgatcatc tgcgcggccc tcgccggcca
      901 ctacatcgcc gagggcatga gcctggtgca gtgggcgggc gcggtctgcg ccgtcctggg
      961 ctcggtgacc gtggcggtgg ccgtcagggt ctggccgacg ccggcgaagg ccaaggcccc
     1021 gcagcgccag cgggactagt tctcaatccg catagacatc caggcccatg gcgctgagca
     1081 gggcctgctg ttgcgacagg gtgatcttca tcccggcgtg accagccagc gccgacaggt
     1141 cgaggccgga gacctcggcg ccgcgcaggt ccgcgccatc cagtttcgcg cccgtggtca
     1201 gggcctggaa gaggtcgcag cccttcaggt ccgcgccgct caggtcggcg tccgtcaggt
     1261 cggcttcgcg cagggatgag ccggtgaggt cgcagccctt caggctggcg tcggagaggt
     1321 cggcgagctc caggttgcag cgcaggaagg cggccgatgt gtggatcgcc ttggggctga
     1381 gcgcgcgggc gaagtcggcg cggtggaagc gggcgccccg caggttggtg tccttgaagg
     1441 cgacggacca ggcgctggtg cgctcgatgt cggcgaagga gagatcgcag gcctcgaagc
     1501 tcgcctggtc gagctgggag aaggcgatct ggacgccgga gtggctgtcc ggatcggcga
     1561 agttgcagcg gacaaaggtc gcctcgcgca gatcggcgtg ggcgaagcgg cagcgcagga
     1621 agcggcattc ggtgaaccgc gcgccctgca gcatcaccgc cgagagctgg gcgtcggtca
     1681 ccgtgcaact tgtcagtttg atatcggcga ggtcgcgctc gctccagtcc aggttggaca
     1741 ggtccgcgtc ggcgaggctg gcgccggcgg cgagatcggg gtcggcgccg gccatctcga
     1801 cccctcagta gtaggtttcc acgacctcta cgccgaccgg ggccagcgag agccccgcca
     1861 gcttcaggtg ctgcagcgcg aaggggatgc cgatgatggt gaccgcctgg accacggcga
     1921 tgatcaggtg gtgcagcgcc agccaccagc cggcgaagat cagccacagg atgttgagca
     1981 ggccgctgcc tacgcccatg tcgtacggga tcgcagtctt gccgaagggc gcatagctga
     2041 agccggcgat gcggaaggcc gccgggaccc agggcagacc cacgatggtc agcgcgaaga
     2101 cgcagccggc gatgatccac aacgtgccgg aaatccagcc gccgcagatg aaccacagga
     2161 cgttgaggat gagccgcatc aggcgctcac cgggccgcgg cgatgggg
//
LOCUS       DATAJL010000630         1671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_83365,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000630 DATAJL010000000
VERSION     DATAJL010000630.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1671
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83365"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1671
                     /locus_tag="VHN39_12130"
     CDS             <1..>1671
                     /locus_tag="VHN39_12130"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="outer membrane beta-barrel family protein"
                     /protein_id="HEX2817140.1"
                     /translation="PVKTVEGVTVTGASAPEVQGSIDRHSYALGKDLAATTGSIADAL
                     RNLPSVEVDLQGNLSLRGDPNVTILVDGKPSPAFEGAGRADALQQLPADQIERVEVIT
                     NPSAALNPEGPGGVINLITKKSHGAGVTGGAYVTAGSAGLKRAGTNFGYNTKKLAITG
                     ALSGNYQRIKNTNTDLRGGLDPTSGQFLINHDDGFGHNITRGPSARLNLSYSLTPKDQ
                     ITGAATYNELLVHGHPLDRFEDDGVTDAPVSIFSRQGARRFLETDTSLAAAWKHSFAG
                     DGHDLSIDLLHNASLPRQGFLFTTFPELPATPVPLDKIRDDSSERHSELRVAYSQPLA
                     GGALKAGYELRYDDNDYRHLESMGPTEALLALLPSRANEFGAKQTINTAYATYQRGFG
                     DLDFQLGLRVEDVRIDIAQFTSGERDRQDYGKAYPSLHLAYKLDDERKLTASYSERVQ
                     RPSPFILNPLRVIEDPQNVLQGNPALKPQDTQSFELGYEQRKGSDTYQATFYYRRNTG
                     VAVGVLIDLGNGVFEQTFGNLGRSQAAGVELAASVKLSATLSFNTSSN"
BASE COUNT          324 a          573 c          532 g          242 t
ORIGIN      
        1 ctccggtgaa aactgtcgag ggcgtcaccg tgaccggggc gagcgcgccc gaggtccaag
       61 gctccatcga caggcacagc tatgccctcg gcaaggacct ggcggcaacc accggatcca
      121 tcgccgatgc gctgcgcaac ctgccctcgg tggaagtgga cctgcagggc aacctcagtc
      181 tccgcggcga tcccaacgtc accatcctgg tggacggcaa gccttcgccg gccttcgagg
      241 gcgcgggccg ggcggacgcg ctgcagcagc tgcccgccga ccagatcgaa cgggtggagg
      301 tgatcaccaa tccgtcggcg gcgctgaacc cggagggccc cggcggggtc atcaacctga
      361 tcaccaagaa gagccacggg gcgggcgtca ccggcggggc ctacgtcacc gccggcagcg
      421 cgggcctgaa gagggcgggg acaaatttcg gctacaacac caagaaactg gccatcaccg
      481 gggcgctgtc gggcaactac cagcgcatca agaacacgaa cacggatctc cgcggcggcc
      541 ttgaccccac gagcggccag ttcctgatca accacgacga tggcttcggc cacaacatca
      601 cgcgaggacc ctcggcgcgg ctgaacctca gctattcgct cacgcccaag gaccagatca
      661 ccggcgcggc gacctacaat gagctcttgg tgcacggcca cccgctcgac cgtttcgaag
      721 atgacggggt cacggacgcg ccggtcagca ttttcagccg gcagggcgcg cggcggttcc
      781 tggagaccga caccagcctg gccgccgcct ggaagcacag ctttgccggc gacggccacg
      841 atctgtcgat cgacttgctg cacaacgcgt cgctgccgcg ccagggcttc cttttcacga
      901 cctttccgga gctgccggcc acacccgtgc cgctggataa gatccgcgac gactccagcg
      961 agcgccattc ggagctcagg gtcgcctatt cgcaacccct ggcgggcggt gcgctgaaag
     1021 ccggctatga gctgagatat gacgacaacg actaccgtca cctggagtcg atggggccga
     1081 cggaagccct gctggcgctg ctgccgagcc gggcgaacga gttcggggcc aagcagacga
     1141 tcaacaccgc ctatgccacc tatcagcgcg gcttcggcga cctcgatttc cagttgggtc
     1201 tcagggtcga ggacgtgcgg atcgatatcg cccagttcac ctccggcgag cgggatcgtc
     1261 aggactacgg caaggcctat ccgagcctgc acctggccta caaattggac gatgagcgca
     1321 agctgaccgc cagctacagc gaacgcgtgc agcggccctc gcccttcatc ctgaacccgc
     1381 tgcgcgtcat cgaggacccg cagaacgtgc tgcagggcaa tcccgccctg aagccgcagg
     1441 acacccagtc gttcgagctc ggctatgaac agcgcaaggg gtcggatacc taccaggcga
     1501 cgttctacta ccggcgcaac acgggtgtgg ccgtcggcgt gctgatcgac ctgggcaatg
     1561 gcgtcttcga acagaccttc ggcaatctgg gccgcagtca ggcggcgggc gtggagctgg
     1621 ccgccagcgt caagctgagt gcgacgctca gcttcaacac cagcagcaac c
//
LOCUS       DATAJL010000631         1844 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68842,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000631 DATAJL010000000
VERSION     DATAJL010000631.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1844
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68842"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VHN39_12135"
     CDS             <1..632
                     /locus_tag="VHN39_12135"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX2817141.1"
                     /translation="SPGFRRALAFYGEVFQRGLAPLESSTQIGNLYDEFDRGSFAFYI
                     SGPWNLGEFRRRLPPTRQDIWMTAPMPGPAGPGAGIAGGSSLAVFRGSRDKAAAWRLV
                     EYLSQSQVQSRFSALTGDLSPRRDAWSAPPLAGDAKAAAFRDQLERVKPTPQVPEWER
                     IATEMQLVAEQMVHGRLSIDQAAAEIDRRADRLLEKRRWMLARRAGVAP"
     gene            629..1507
                     /locus_tag="VHN39_12140"
     CDS             629..1507
                     /locus_tag="VHN39_12140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017506093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEX2817142.1"
                     /translation="MRGSQAGWAFVAPALAVIGLFFLVPTIAALALSLTDFDIYALAD
                     LRNLRFVGLRNYAELLANPLFWQALGNTLYFVLVGVPLSIAVSLGTALLLQSPLARFK
                     GVFRTALFAPVVTTLVAVAVIWRYLLHTHYGLLNYALSAVGIAPVDWLGDPHWAMPAI
                     ILFAVWKNFGYNMLIFVAGLQTIPEELYEAARMDGASALRRLWHVTLPGLAPVTLLVS
                     LLTVAGYLQLFAEPYVMTQGGPQQSTVSVLYFMFEQGFKWWNLGIASAVAFLLFVMIL
                     AVTLVQLAVARRRGML"
     gene            1504..>1844
                     /locus_tag="VHN39_12145"
     CDS             1504..>1844
                     /locus_tag="VHN39_12145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018081911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEX2817143.1"
                     /translation="MKRWPASLLVNGLLVAAAGFALLPLLWMLSVSFMRPGEADSFPP
                     PLLPSAPTLAAYRSLFAQHGMGRYFANSLFLASAATGISLIFNVAAGYAFAKLRFAGR
                     DRAFQLLLVALV"
BASE COUNT          231 a          663 c          603 g          347 t
ORIGIN      
        1 ggagccccgg cttccggcgc gcgctggcct tctatggcga ggtcttccag cgcggcctgg
       61 cgcccctgga gtccagcacc cagatcggca atctctacga cgaattcgac cgcggctcct
      121 ttgccttcta catctctggg ccgtggaacc tgggcgagtt tcgccgccgc cttccgccca
      181 cccggcagga catctggatg accgcgccga tgcccgggcc agcgggaccc ggagccggga
      241 tcgccggcgg gtccagcctg gcggtcttcc gcggttcgcg cgacaaagcg gcggcctggc
      301 ggctggtcga atatctgtcg cagagtcagg tccagagccg gttcagcgcg ctgaccggcg
      361 acctgtcgcc ccgccgcgac gcctggagcg ccccgccgct ggcgggcgac gccaaggccg
      421 ccgcgttccg cgatcagctc gagcgggtga agccgacgcc tcaggtcccg gagtgggagc
      481 ggatcgccac ggagatgcag ctggtcgccg aacagatggt ccatggacgg ctgagcatcg
      541 accaggctgc ggcggagatc gatcggcgcg ccgaccggtt gctcgagaag cgccgctgga
      601 tgctggcccg gcgcgcgggg gtcgcgccat gaggggcagc caggccggat gggctttcgt
      661 ggcgcccgcg ctggcggtga tcgggctatt cttcctggtc cccaccattg cggccctggc
      721 gctcagcctg accgacttcg acatctacgc gctggccgac ctgcgcaacc tgcgtttcgt
      781 cggccttagg aactacgccg agctgctggc caatccgctg ttctggcagg cgcttggcaa
      841 caccctctat ttcgtccttg tcggcgtacc gctgtccatc gctgtctcgc tcggcacggc
      901 gctgctgctg cagtcgcccc tggcgcggtt caaaggggtc ttccgtactg cgttgttcgc
      961 gcccgtggtg accaccctcg tcgcggtggc ggtgatctgg cgctacctgc tgcataccca
     1021 ctacggcctg ctcaactacg ccctgagcgc ggtcggaatc gccccggtgg actggctcgg
     1081 cgacccgcac tgggcgatgc cggcgatcat ccttttcgcc gtctggaaga acttcggcta
     1141 caacatgctg atcttcgtgg cgggcctgca gaccatcccc gaggagctct atgaagcggc
     1201 caggatggac ggcgcctcgg cgttgcgccg gctgtggcac gtcaccctgc cgggcctcgc
     1261 tcccgtcacg ctgctggtca gcctgcttac ggtcgcgggc tatctgcagc tcttcgccga
     1321 gccctatgtg atgacccaag gcggcccgca gcaatccacc gtcagcgtcc tctacttcat
     1381 gttcgaacag ggtttcaaat ggtggaacct ggggatcgcc tcggccgtgg ccttcctgct
     1441 gttcgtgatg attctggccg tgaccctcgt tcagctcgcc gtcgcccggc gccgggggat
     1501 gctatgaagc gctggccggc cagcctcctg gtgaacggcc tgctggtcgc ggcggccggg
     1561 tttgcgctcc tgccgctgct gtggatgcta tccgtctcct tcatgcggcc gggcgaagcc
     1621 gacagcttcc cgccgccgct cttgcccagc gcgccgaccc tggccgccta ccgctcactc
     1681 ttcgcccagc acggcatggg tcgctacttc gccaacagcc tgttcctcgc ctcggcggcg
     1741 accggcattt ccctgatctt caacgtcgcc gccggctacg ccttcgccaa gctgcggttc
     1801 gcgggccgcg accgggcctt ccagctcctg ctggtggcgc tcgt
//
LOCUS       DATAJL010000632         2086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94895,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000632 DATAJL010000000
VERSION     DATAJL010000632.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94895"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(108..593)
                     /locus_tag="VHN39_12150"
     CDS             complement(108..593)
                     /locus_tag="VHN39_12150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817144.1"
                     /translation="MTGAGGLAMALCLAGGPAAAQIQVVSAGGEYETFHPRPVAAQAG
                     ASGEGFQAAMDRAFGAGRWRKTSGYRTQAQENALRRQGAGTVAPGHVSYHSIGAPDSP
                     HAYDAVVAGMSLTSAAAKLKRAGGPFSRVLAEGAHGPQGAHLHIELVSAHAGSGSASE
                     N"
     gene            823..1080
                     /locus_tag="VHN39_12155"
     CDS             823..1080
                     /locus_tag="VHN39_12155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018083646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEX2817145.1"
                     /translation="MSQADATARVQAAAKVEVRDSAGNLLADGDSVSLIKDLKVKGAG
                     QTLKRGTVIRSIRLTDDAQEIDCRFEGIKGLVLRVEFVKKL"
     gene            1125..1538
                     /locus_tag="VHN39_12160"
     CDS             1125..1538
                     /locus_tag="VHN39_12160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2817146.1"
                     /translation="MARTILVWALVLVAGAFALQWLEYQYVARRFSWEVYVGLIGTAF
                     AAGGVWVGWKLSQRSAPGPFARNALAQASLGLTGQEMKVLERLAAGQSNKEIARTLGL
                     SPNTVKTHLANLFAKLEVARRTQAVGKARDLQLIP"
     gene            1645..>2086
                     /locus_tag="VHN39_12165"
     CDS             1645..>2086
                     /locus_tag="VHN39_12165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4199 domain-containing protein"
                     /protein_id="HEX2817147.1"
                     /translation="MTRIILTYGLISGLVIILASLAVIVAHGDGNIWLGYLTMLVALS
                     SILVGVKQHRDQALGGVIKFWPAFMLGLGIAVVASLVYVVVWEIYLAATHYTFMDKYA
                     SAMLAAKRAAGVTGAAYAKAVAEADAMRRNYANPLYRMPETFLEI"
BASE COUNT          325 a          768 c          673 g          320 t
ORIGIN      
        1 acgtggaccc gaccctggac cgctatgacg tcatccactt cgtgcgcggc gacgtgctgg
       61 tggagatcgc gccggtcgag gcccgcggcg cgtcgcagta ggcgcgctca gttttccgag
      121 gcgctccccg acccggcgtg ggcgctgacc agctcgatgt gcagatgcgc gccctgcggc
      181 ccgtgcgcgc cctccgccag cacacggctg aacggcccgc cggcgcgctt gagcttcgcc
      241 gcggcgctgg tcagcgacat gcccgccacc accgcgtcgt aggcatgcgg cgagtccggc
      301 gcgccgatcg agtggtagga cacatgcccc ggcgcgaccg tgcctgcgcc ctggcggcgc
      361 agcgcgttct cctgcgcctg ggtgcgatag ccgctggtct tgcgccaccg ccccgccccg
      421 aacgcccggt ccatggccgc ctggaagccc tcgccgctcg cccccgcctg ggcggcgacg
      481 ggccggggat ggaaggtctc atactcgccg ccggcggaaa ccacctggat ctgcgcagcc
      541 gcgggcccgc ccgctaagca aagcgccatc gccaggccgc ctgcgccggt cacgcgcttc
      601 catccagcaa gtccgtcgcg caccagcgac tccaccaaca ttcggcggta agcccgccgg
      661 tcctatgcgg ccaccctagc caatcaggct ttccagagcg ttcaccgcag gaggctggct
      721 ctcgcggccc ggaaccacta tgccgtggcg gcgactgagc gaggcggcat gaacggcgag
      781 aacgacgcgg acttcgtcta cgacgaggcg accggcgaat ggatcagcca agccgatgcg
      841 acggcccggg tccaggcggc ggcgaaggtc gaagtgcgcg actcggcggg aaatctgctg
      901 gccgacggcg acagcgtcag cctgatcaag gacctcaagg tcaagggcgc cggccagacg
      961 ctcaaacgtg gcacggtgat ccgctcgatc cggctcaccg atgacgccca agagatcgat
     1021 tgccgcttcg agggcatcaa gggtctcgtt ctgcgcgtcg agttcgtcaa gaagctctag
     1081 cgtagggcag ttgacccccg cgcgggatcg cgcaccatcg ccccatggct cgcaccatcc
     1141 tcgtctgggc gctcgtcctg gtcgccggcg cctttgcgct gcagtggctg gaataccagt
     1201 acgtggcgcg ccggttctcc tgggaggtct acgtcggcct gatcggcacg gccttcgcag
     1261 ccggcggcgt ctgggtgggc tggaagctca gccaacggtc cgcgccgggg cccttcgccc
     1321 gcaacgccct ggcgcaggcc tcactcggcc tcacagggca ggagatgaag gtgctggagc
     1381 gcctcgccgc cggccagtcc aacaaggaga tcgcccgcac gctgggcctc tcgcccaaca
     1441 ccgtgaagac ccacctggcc aatctcttcg ccaagctcga ggtcgcccgc cgcacccagg
     1501 cggtcggcaa ggctcgcgac ctgcagctca tcccgtgacg gtctctttcc gaatggatca
     1561 gacgcacgat ctcacccttt cgggcgatac cgctcgccaa gccgcgccgg caggctccag
     1621 gcgaacctca agggagcgaa catcatgacc cgcatcatcc tgacctacgg cctgatctcc
     1681 ggcctcgtca tcatcctcgc cagcctggcc gtcatcgtcg cccacggcga cggcaacatc
     1741 tggctgggct acctgaccat gctggtggcg ctgtcctcga tcctggtggg cgtcaagcag
     1801 catcgcgacc aggcgctggg cggggtgatc aagttctggc cggcattcat gctcggcctc
     1861 ggcatcgctg tcgtcgcctc gctggtctac gtcgtggtgt gggaaatcta cctggccgcg
     1921 acccactaca ccttcatgga caagtacgcc tcggccatgc tcgccgccaa acgcgccgcc
     1981 ggcgtcaccg gcgcggccta cgccaaggcc gtggccgagg cggacgccat gcgccgtaac
     2041 tacgccaatc cgctctaccg catgccggag actttcctgg agatct
//
LOCUS       DATAJL010000633         3850 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_68862,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000633 DATAJL010000000
VERSION     DATAJL010000633.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3850)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3850)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3850
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_68862"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VHN39_12170"
     CDS             <1..316
                     /locus_tag="VHN39_12170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817148.1"
                     /translation="PVAVGVVFCVLATFAAAFDLKMILRGGISGPARLARHIWRMCTA
                     LFAATGSFFIGQPQVFPTPLRGSPILLALGLAPLAFMIFWLFRVRSTSGRRARPFARS
                     PA"
     gene            313..1053
                     /locus_tag="VHN39_12175"
     CDS             313..1053
                     /locus_tag="VHN39_12175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817149.1"
                     /translation="MILQLAPDTPLVIRALAGTALVTHIGGASLGIVSGFVALLARKG
                     RPLHRLSGHVFFGSMLAMSAVAAVVAPMLHDSISAIVGAFTFYLTATAWAVVRRPPVS
                     VGRFEMGAGLYALAVAVVAFALGRIGSLAPDHLLEGQPYEIAYVLAGIATLAAVSDFR
                     VVRLGGLSGPPRIARHLWRMCLALFVATGSAVAQPKVVVLLPKAISHSALLLFTPALA
                     VLALMVFWLIWVRIPRRRRAPITLLVAT"
     gene            1068..2081
                     /locus_tag="VHN39_12180"
     CDS             1068..2081
                     /locus_tag="VHN39_12180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817150.1"
                     /translation="MRQLSSLIIAVAMAASAAHAAGPAYKAPRTAFGTPDFQGLWTNT
                     SLTFLQRPPIFKSLVATDKEAAMMEAGFKGLLGDLLKPTVDPKLPAPPVVKEAPQSDI
                     IEMDLHLARIGGQMRSSWIVEPADGRIPFTDAGKKANRAANDETFKDPESRPASERCL
                     TAVGSPEGPPMMNTGFNGNYQIVQTPGYIAINIEMNHDVRIIRMGDRTHLPRAISPWM
                     GDSVGWWEGDTLVVETTNLRSDAPVASLGGGFTFSPKGKLTERFTRTSKDQILYEFTV
                     DDPDYFKQPWRGEMPMRTTKGPIYEYACHEGNYSIANALSGARFEDKQPPAAAPAPGG
                     GAP"
     gene            complement(2139..3026)
                     /gene="rpoH"
                     /locus_tag="VHN39_12185"
     CDS             complement(2139..3026)
                     /gene="rpoH"
                     /locus_tag="VHN39_12185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HEX2817151.1"
                     /translation="MAASALSVMSPDGGLSRYLSEIRKFPMLAKDEEFMLAKRWQEHE
                     DPDAAHRLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFDPDKGFRLAT
                     YAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFNLRKAKSEISALQEGDMHPDQVSV
                     IATKLGVLDSEVISMNRRLSGGDASLNSPMRADSESEWQDWLVDDKTPSQETVVADTQ
                     EKTLRMGLLEEAMTELTDRERHILTERRLKDEPTTLEDLAGQYGVSRERVRQIEVRAF
                     EKLQKSMKAAAMDRNLIDA"
     gene            complement(3263..>3850)
                     /locus_tag="VHN39_12190"
     CDS             complement(3263..>3850)
                     /locus_tag="VHN39_12190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817152.1"
                     /translation="GGGFAGRGPGGGGPGGGRGPGGAGRGGPQDGRLRISLFHTIFFD
                     NQFLVRPAGPVLDFLDGASLNGGGGQPRQEIQAQINIAERGYGAELNADWKSGTSVKG
                     GLPGTLGASSGDLSFSGVTKVNARLFADLDRRPALLARAPWVKGARLSFSVSNIFDQK
                     VSVHDALGFTPLNFQPAYIDPLGRTWRIALRKLFS"
BASE COUNT          565 a         1347 c         1263 g          675 t
ORIGIN      
        1 gcccgtggcg gtgggcgtgg tcttctgcgt cctcgccaca ttcgccgcgg cgttcgacct
       61 caagatgatc ctgcgcggcg ggatttccgg gccggcgcgc ctggcccgcc acatctggcg
      121 catgtgcacg gcgctgttcg ccgccacggg ctccttcttc atcggccagc cccaagtatt
      181 tccgacgccg ctgcgcggat cgccgatcct cctggcgctt ggcctcgccc ccctggcgtt
      241 catgattttc tggctgttcc gcgtcaggtc cacgagcggc cgtcgcgccc ggcccttcgc
      301 aaggtcgccc gcatgatcct ccagctcgcc cctgacaccc cgctggtgat ccgcgcgctc
      361 gcggggacgg ccctggtgac gcacatcggc ggggccagcc ttggcatcgt ctccggcttc
      421 gtggcgctgc tcgcccgcaa gggccggccg ctgcaccgcc tgtccggcca cgtattcttc
      481 ggctccatgt tggccatgtc ggcggtggcc gcggtggtcg ccccgatgct gcacgatagc
      541 atctcggcca tcgtgggggc cttcaccttc tacctgacgg ccacggcctg ggcggtggtt
      601 cgccgcccac ccgtcagcgt cgggcgcttc gagatgggcg ccggcctcta tgccctggcc
      661 gtcgctgtgg tggccttcgc gctcggccgg atcggatcgc tggcgcccga ccacctgctg
      721 gagggccagc cctacgagat cgcctatgtc ctggcgggca tcgcgaccct ggcggcggtg
      781 tccgacttcc gcgtcgtgcg gctgggcggc ctttccggcc cgccccgcat cgcgcgccac
      841 ctgtggcgca tgtgcctggc cctgttcgtc gccaccggct cggcggtcgc ccagcccaag
      901 gtggtggtgc tactgccgaa ggctatcagc cactcggcct tgttgctgtt cacgccggcg
      961 ctggcggtcc tggcgctgat ggtcttctgg ctcatctggg tccgtattcc caggcggcgc
     1021 cgggccccga ttaccctcct cgtcgcaacc tgaaacggag cgcccacatg cgccaactgt
     1081 cgagcctgat catcgcggtc gccatggccg ccagcgccgc ccacgccgcg gggcccgcct
     1141 acaaggcgcc gcgcaccgcc ttcggaaccc cggacttcca gggcctgtgg accaacacct
     1201 cgctgacgtt cctgcagcgg ccgccgatct tcaaaagcct ggtggcgacc gacaaggagg
     1261 ccgccatgat ggaggcgggc ttcaagggcc tgttgggcga tctgctcaag cccacggtcg
     1321 acccgaagct gccagccccg ccggtggtca aggaagcgcc gcagtccgac atcatcgaga
     1381 tggacctgca tctggcccgc atcggcggac agatgcgctc ctcgtggatc gtggagccgg
     1441 ccgacgggcg gatccccttc accgacgccg gcaagaaggc caaccgcgcc gccaacgacg
     1501 aaacgttcaa ggaccccgaa agccgcccgg cctccgagcg ctgcctgacc gcggtcggct
     1561 cacccgaggg gccgccgatg atgaacaccg gcttcaacgg caactaccag atcgtccaga
     1621 cccccggcta catcgccatc aacatcgaga tgaaccacga cgtgcggatc atccggatgg
     1681 gcgaccgcac ccacctgccg cgcgccatca gcccctggat gggcgactca gtcggttggt
     1741 gggagggcga caccctggtg gtcgaaacca ccaaccttcg ctccgacgca ccggtcgcga
     1801 gcctcggcgg cggcttcacc ttctcgccga agggcaagct gaccgagcgc ttcacgcgca
     1861 cgtcgaagga ccagatactc tacgagttca ccgtcgacga tccggactat ttcaaacagc
     1921 cctggcgcgg cgagatgccg atgcggacca ccaaggggcc gatctacgaa tacgcctgcc
     1981 acgaggggaa ctactccatc gccaacgcgc tctcaggcgc gcggtttgag gacaagcagc
     2041 cgcccgccgc ggctccggcc ccgggcggtg gcgcgccgta acgaaaaagg cggccgggtc
     2101 gccctggccg cctgttcatt ttggtctgag gatgagctct aggcgtcgat cagattgcgg
     2161 tccatggccg cggccttcat cgacttctgc agcttttcga aggcgcggac ctcgatctgg
     2221 cggacccgct cgcggctgac gccatattgg ccggcgaggt cttccagagt ggtgggctcg
     2281 tccttcagcc ggcgctcggt aaggatgtgg cgctcgcggt cggtgagctc ggtcatggcc
     2341 tcttccagga ggcccatgcg cagggtcttt tcctgggtgt cggcgaccac cgtctcctgg
     2401 ctgggggtct tgtcgtccac cagccagtcc tgccactcgc tctccgagtc cgcccgcatg
     2461 ggcgaattca gcgaggcgtc gccgccgctg aggcggcggt tcatcgagat gacttcggag
     2521 tccagcacgc cgagcttggt ggcgatgacg ctaacctggt caggatgcat gtcgccttcc
     2581 tgcagggccg agatctcgct cttggctttc ctgaggttga agaacagctt cttctgggcc
     2641 gcggtcgtgc ccatcttcac caggctccac gagcgcagga tgtattcctg gatcgaggcg
     2701 cggatccacc acatggcgta ggtggcgagc cggaatccct tgtccggatc gaacttcttg
     2761 accgcctgca tcaggccgac gttgccttcg gagatcacct cgccgatcgg caggccgtag
     2821 ccgcggtagc ccatggcgat cttggccacg agacgaaggt ggctggtcac caggcggtgg
     2881 gcggcatcgg ggtcttcgtg ttcctgccag cgcttggcga gcatgaattc ctcgtccttc
     2941 gccagcatgg gaaacttgcg gatttcagac aggtatcgac ttaggccgcc atccggcgac
     3001 atcacagaca gggcgcttgc ggccatggat taatcccctc aattcctgga cgtccgggcc
     3061 ggcgcgcttt ccgcgcgcct gatccatccg ccccccttca actctcagat atgtacgagg
     3121 ttgcggttgc ggaaggcctg ggagggcggc ccttaatgtc ccactgctct agtgggactt
     3181 tctagccact gaaatgggcg ccttcaaggc acggtttctc acaaggtctg tagcaaacct
     3241 gcgcggccag ccttgcgcgg ggtcaggaaa atagcttgcg gagggcgatc cgccaggtgc
     3301 ggccgagcgg gtcgatgtag gccggctgga agttgagcgg ggtgaagccg agcgcgtcgt
     3361 gcaccgagac cttctggtcg aagatattgg acaccgagaa gctcagccgc gcgcccttca
     3421 cccagggcgc gcgggccagc agcgccgggc gcctgtccag gtcggcgaag aggcgcgcgt
     3481 tgaccttggt gacgccggag aagctgaggt cgccggagga agcgcccagg gttcctggca
     3541 agccgccctt cacagaggtg ccgctcttcc agtcggcgtt gagctccgcg ccatagccgc
     3601 gctcggcgat gttgatctgg gcctggatct cctggcgggg ctgaccgccc ccgccgttca
     3661 gcgaggcgcc gtccaggaag tcgagcaccg ggccggccgg gcggaccagg aactggttgt
     3721 cgaagaagat cgtgtggaag agcgagatcc tgaggcgccc gtcttggggc ccgccgcggc
     3781 ccgctccgcc cgggccgcga ccgccaccgg ggccgccccc gcctggtcca cgtccggcga
     3841 agccgccgcc
//
LOCUS       DATAJL010000634         4867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_60991,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000634 DATAJL010000000
VERSION     DATAJL010000634.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4867
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_60991"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..957
                     /locus_tag="VHN39_12195"
     CDS             <1..957
                     /locus_tag="VHN39_12195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEX2817153.1"
                     /translation="GVTIPNRPEALVWARGLDAPADYAPAKRPAPVPPAADRPTALFV
                     TRVESLTRDPYSVWARDILKLRNIERPDEPVDARARGTAIHGAFERFALDHPADLPAD
                     AAAIFEGLYLEELEKAGMPHEALAREKALAREAAAWVADLEARRRADGRAIHVEKTGV
                     LDVEIEGRTFRLSAKADRIETDPQGYGHILDYKTGRAPSQKVVDAGFSPQLTLTAAIL
                     AHGKFAGIDGPLKPGELTYLEITGRKPAGREEVRATAGDESREAAKQALAGLKTLIAR
                     YWDPAQPFVSRTAPQFVHQYASDYDHLARVFEWSTSGEEGEE"
     gene            954..4397
                     /gene="addA"
                     /locus_tag="VHN39_12200"
     CDS             954..4397
                     /gene="addA"
                     /locus_tag="VHN39_12200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000724 - double-strand break repair via
                     homologous recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="double-strand break repair helicase AddA"
                     /protein_id="HEX2817154.1"
                     /translation="MSVAPDPQRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAGV
                     DPEKVLCVTYTKAAAAEMQRRLFGRLGEWSVMKDEALTERLSDLEGPRDFDGRRLSEA
                     RALFARALETPGGLKIQTIHAFCEKLLRRFPLEAGVSPGFRVMDDAAAAGIADDARKA
                     VARHALSGEGLVAEAYARFSVQLDFAAFQSMFLGFETRRARLAAFFAEQGGYAGAEAW
                     VWDACGGEPSQTPDVLEAEAMAELDRALWRDAARVLAQGTATDQKNAAKLTAVAADPA
                     AALAQALDALFIEKGEGAQATWVFTTSGLKAREDLRQALRDEQDRLAIVRERIRGARV
                     AADTLDALVLAEAYLAAYRIEKASAGALDFADLIEKTKALLKGRPAAAWVLYKLDGGI
                     DHILVDEAQDTAPDQWDIVRALTGEFFVGAGADGRPRPLKRSLFVVGDDKQSIYSFQG
                     ADPARLNDETRRYLAEIEAAELTGKSVPLISSWRSTVEVLDFVDAVFTQGVPPGVDAL
                     THIPMRAEDRGCVDLWPLFKDAKAEDRDAWTAPLDLEAEGSANKRLAQAIACEVGDLV
                     ARGDAVLDKDTRKWRAATPGDVLILVRKRGGLFEEILRALKHAKIPVAGADRLALSEH
                     IVFDDLLALARFALFPADDLTLAALLRSPFCDVEDESLYRLAKNRTASLWATLLERAD
                     EQGDWRGAADYLSALIAEAKARRPFELYSRVLGLRDAAGRSMRARLLRRLGREAEDAL
                     DEFLAQVLAAEQRGVHDLERLAAAFAGLDITVKRELEAGRDEVRVMTAHGAKGLEAPI
                     VFLPETTTTAGARGSPLLETEEGGFLWCASQKGDCEASRLARERRASKENEESLRLLY
                     VALTRARERLVLCGRIASNRKEETLKGWWAQIRAGFDHADIEPHTRLVACGEVQATRY
                     GPDPDQMASRRAASSVVSAVPAWAAQEAPAEAFSRYASPSDLGEGGKTPSPSPLSAVG
                     GLGRFRRGDLIHRLLQILPDLKPDAWGPGAQALLARERDLTDAQRAEMTTAALLVLED
                     PRFAEVFGPGSRAEVAIAGSAARLPPGLKISGRIDRLVVLPDRVLVADFKTNRPSPAR
                     IEDADPAYLRQMAIYAAVLADVFPHHSIEAALVWTDGPKLMLIPEILLAQSLADLGRG
                     S"
     gene            4483..4848
                     /gene="trxA"
                     /locus_tag="VHN39_12205"
     CDS             4483..4848
                     /gene="trxA"
                     /locus_tag="VHN39_12205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519026.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEX2817155.1"
                     /translation="MSTVKVTDESFEKDVLQAAGPVLVDFWAEWCGPCKQIAPALEQI
                     ADELGANVTIAKLNIEESPTTPSRYGVRGIPTMMLFKDGQMASMKVGAMPKQKILEWL
                     NEAGVAAALHSGSGISSLG"
BASE COUNT          734 a         1740 c         1715 g          678 t
ORIGIN      
        1 ggcgtgacca ttcccaaccg gcccgaggcg ctggtctggg cgcgcggcct ggacgcgccc
       61 gccgactacg cccccgccaa gcgtcccgcc ccggttccgc ccgcggccga ccggccgacg
      121 gcgttgttcg tcacccgggt cgagagcctg acccgcgacc cctattcggt ctgggcgcgc
      181 gacatcctga agctgcggaa catcgagcgt cccgacgagc cggtggatgc gcgggcccgg
      241 ggcacggcga tccacggcgc cttcgagcgg ttcgcgctgg atcaccccgc ggacctgccc
      301 gccgatgcgg cggcgatctt cgaaggcctc tatctggagg agctggaaaa ggcaggcatg
      361 ccgcacgagg cgctggcccg ggagaaggcg ctggcccggg aggccgccgc ctgggtcgcc
      421 gacctggagg cgcggcggcg cgccgacggt cgcgcgatcc atgtggagaa gaccggtgtc
      481 ctcgacgtcg agatcgaggg ccggaccttc cggctctccg ccaaggccga ccggatcgag
      541 acggaccctc aaggctacgg ccacatcctc gactacaaga ccggtcgcgc gccctcgcag
      601 aaggtggtgg acgccggctt ctcgccgcag ctgacgctga ccgctgcgat cctggcgcac
      661 ggaaaattcg cggggatcga cggccccctg aagcctggcg agctgaccta tctggagatc
      721 accggccgaa aacccgcggg ccgcgaggag gtgcgcgcga ccgccgggga cgaaagccgt
      781 gaggccgcca aacaggcgct ggcgggcctg aagaccctca ttgcccgcta ctgggacccg
      841 gcccagccct tcgtctcacg cacggcgccg cagttcgtcc accagtacgc cagcgactac
      901 gaccatctgg cccgggtctt cgaatggtcc accagcggcg aggagggcga ggagtgagcg
      961 tcgcccccga cccgcaacgc atcgccgccg atccggcgat ctcggccttc gtcaccgcca
     1021 atgccggctc cggcaagacc aagaccctga tcgaccgggt ggcgcggctg ctgctggccg
     1081 gcgtcgaccc ggagaaggtg ctctgcgtca cctacaccaa ggccgccgcc gccgagatgc
     1141 agcgcagact gttcggccgg ctgggcgagt ggtcggtgat gaaggacgag gcgctgaccg
     1201 agcgcctgag cgacctggag ggcccgcgcg acttcgacgg ccgccgcctc tccgaagccc
     1261 gcgccctctt cgctcgtgcg ctggagaccc ccggcgggct gaagatccag accatccacg
     1321 ccttctgcga aaagctcttg cggcgctttc cgctggaggc aggggtctcg ccggggttcc
     1381 gggtcatgga cgacgccgcg gcggctggca tcgccgacga cgcccgcaag gccgtggccc
     1441 gccacgcgct ctccggcgaa ggactggtgg ccgaggccta cgcccggttc tccgtccagc
     1501 tcgacttcgc cgccttccag tcgatgttcc tgggcttcga gacccggcga gcgcggctgg
     1561 cggccttctt cgccgagcag ggcggctacg ccggcgcgga ggcctgggtc tgggacgcct
     1621 gcggcggcga gcccagccag acccccgacg tcctcgaagc cgaggccatg gccgagctcg
     1681 accgcgcgct gtggcgcgac gccgcccgcg tcctggcgca gggcacggcg accgatcaga
     1741 aaaacgccgc caaactcacc gccgttgccg ccgatccggc cgccgcattg gcccaggcgc
     1801 tagacgcgct tttcatcgag aagggcgagg gcgcgcaggc cacctgggtg ttcacgacct
     1861 ccgggctcaa ggcccgtgag gaccttcggc aggccctgcg ggatgagcag gaccgcctgg
     1921 ccatcgtgcg cgagcgcatc cgcggcgccc gggtcgccgc cgacactctg gacgccctgg
     1981 tcctggccga ggcctatctg gccgcctacc gcatcgagaa ggcctcggcc ggcgcgctcg
     2041 atttcgccga cctgatcgag aagaccaagg ccctgctgaa gggccgtccg gcggccgcct
     2101 gggtgctcta caagctcgac ggcggcatcg accacatcct ggtggacgag gcgcaggaca
     2161 ccgcgccaga ccagtgggac atcgtgcgcg cgctcaccgg cgagttcttt gtgggcgccg
     2221 gcgcggacgg gcgcccacgg ccgctcaagc gcagcctgtt cgtggtcggc gacgacaagc
     2281 agtcgatcta ttccttccag ggcgcggatc cggcccggct caacgacgag acccggcggt
     2341 atctcgccga aatcgaggcc gcggaactga ccggtaaatc ggtcccgctg atctcctcct
     2401 ggcgctcgac ggtcgaggtg ctggacttcg tcgatgcggt cttcacgcaa ggtgtgccgc
     2461 ccggcgtgga cgccctgacc cacattccca tgcgcgcgga ggaccgcggc tgcgtcgatc
     2521 tgtggccgct gttcaaggac gccaaggccg aggaccgcga cgcctggacc gcacctctcg
     2581 accttgaggc cgagggcagc gccaataagc ggctggcgca ggccatcgcc tgcgaggtgg
     2641 gcgacctggt ggcgcggggc gacgcggtcc tcgataagga cacgcggaaa tggcgcgcgg
     2701 ccacgccggg cgacgtgctg atcctggtcc gcaagcgcgg cggtctcttc gaggagatcc
     2761 tgcgggcgct gaagcacgcg aaaattcccg tggccggcgc cgaccggctg gcgctctccg
     2821 agcacatcgt cttcgacgac ctgctggcgc tggcccgctt cgccctcttc cccgccgacg
     2881 acctgacgct ggccgcgctg ctgcgcagcc cgttctgcga cgtggaggac gagagcctct
     2941 accgcctggc caagaaccgg acggcgtcgc tatgggcgac cctgctggag cgcgccgacg
     3001 agcagggcga ctggcgcggc gcggcggatt atctgtcggc cctgatcgcc gaggctaagg
     3061 cgcgtcggcc gttcgagctc tacagccgcg tgctcggtct acgcgacgcc gcgggccgct
     3121 ccatgcgcgc gcgcctgctg cgtcgcctgg gccgcgaggc ggaggacgcg ctggacgaat
     3181 tcctggccca ggtgctggcc gccgagcagc gcggggtcca cgacctggag cgactggccg
     3241 ccgccttcgc cggcctcgac atcacggtca agcgcgagct ggaggccggc cgcgacgagg
     3301 tccgggtgat gaccgcccac ggcgccaagg gcctggaggc gcccatcgtc ttcctgccgg
     3361 aaaccacgac caccgccggg gcgcggggct cgcccctgct agagaccgaa gagggcgggt
     3421 tcctgtggtg tgcgtcccag aagggcgact gcgaggcctc acgcctggcg cgcgagcggc
     3481 gggccagcaa ggagaacgag gagtcgctcc ggctcctcta cgtggccctg acccgggccc
     3541 gcgagcggct ggtgctctgc gggcgcatcg cgtcgaaccg caaggaagag accctgaagg
     3601 gctggtgggc ccaaatccgc gccggcttcg accatgccga catcgagccg cacacccggt
     3661 tggtggcctg cggcgaggtt caggctacgc gctatgggcc ggacccggac cagatggcga
     3721 gccggcgggc ggcgtcgtcc gtggtctccg ccgtcccggc ctgggccgcg caggaagccc
     3781 cggccgaggc cttcagtcgc tacgcctcgc cgtcggacct gggtgaaggc ggcaagacgc
     3841 cctcgccctc gcccctgtcg gccgtgggcg gactggggcg cttcaggcgc ggcgacctga
     3901 tccaccggct cctgcagatc ctgccggacc ttaagcccga cgcgtggggt cccggcgctc
     3961 aggcgctgct ggcccgcgaa cgcgacctga cggacgccca gcgcgccgag atgaccaccg
     4021 cggccctgtt ggtgcttgag gacccccgct tcgccgaggt gttcgggccg ggcagccgcg
     4081 ccgaggtggc gatcgccggc tccgccgcga gattgccgcc cggactgaag atttccggcc
     4141 ggatcgaccg gttggtggtg ctgccggacc gcgtgctggt ggccgatttc aagaccaacc
     4201 ggccctcgcc ggcgcgcatc gaggacgcgg acccggccta tctgcggcag atggcgatct
     4261 acgccgcagt gctggccgac gtcttcccgc atcactccat cgaggccgcc ctggtctgga
     4321 cggatgggcc caagctgatg ctgatcccag aaatcctgct ggcccaaagc ctcgcggacc
     4381 tcggacgcgg cagttgatac tcggcggccg cgcgcctaca tcggcggatc acgatgcgtc
     4441 ggcttggacg attagaagcg gctgacgcgc aaggagaatt ccatgagcac tgtgaaggtc
     4501 accgacgaat ccttcgaaaa ggacgtcctg caggccgccg gccccgtgct ggtcgacttc
     4561 tgggccgagt ggtgtggccc ctgtaagcag attgcgcctg ccctcgagca gatcgccgac
     4621 gagctgggcg caaacgtcac catcgccaag ctgaacatcg aagagagccc gacgaccccc
     4681 tcgcgctacg gcgtgcgcgg catccccacc atgatgctgt tcaaggacgg gcagatggcg
     4741 tcgatgaagg tcggcgccat gcccaagcag aagatcctgg aatggctgaa tgaggccggt
     4801 gtcgccgcgg cgctgcacag cggctctgga atctcatccc tgggctagtt gggtccgcaa
     4861 cccggaa
//
LOCUS       DATAJL010000635         2777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_37106,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000635 DATAJL010000000
VERSION     DATAJL010000635.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37106"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VHN39_12210"
     CDS             <1..230
                     /locus_tag="VHN39_12210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817156.1"
                     /translation="CDESTLRHLLEAGPHVREGGVLVFQSPLPRVLAFRADPIHRLLK
                     QHGYVVEQCHHGQRRELHVARRSPHEWLKAA"
     gene            232..393
                     /locus_tag="VHN39_12215"
     CDS             232..393
                     /locus_tag="VHN39_12215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817157.1"
                     /translation="MIPASDLWMLGLRPGPQIAYSLTWTQAQPNEPLKAFIAIAERLV
                     QEESPHGVF"
     gene            380..667
                     /locus_tag="VHN39_12220"
     CDS             380..667
                     /locus_tag="VHN39_12220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817158.1"
                     /translation="MECSESRSTPAGKYVVASRLGRWRVLRNDSGVGAFSDRDEAVRF
                     ACGLAREQAVAGTVAVVVVQADVHEMHCFSPPVGAHAAAPSPRLRLIESER"
     gene            1642..>2777
                     /locus_tag="VHN39_12225"
     CDS             1642..>2777
                     /locus_tag="VHN39_12225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817159.1"
                     /translation="MSRIQKPRYLDPLGDPRLGELSVSPPFLFHNVTARVFPLRANMA
                     VLKRFCDNYLNMDVPPSMVHYAPALPYVYLMVLNYGSMAPASVRAQNAGWVGQHEVTF
                     TVPLQRWRVENGLLAFKDWATVSPFIYVDDDLSLNTGREVYGWNKAAGDIESTVPLWL
                     TDPRAKLRQFDLSVGDYGEPDAGGISARRALLHIDSDPPPSFGQFPPDPRNPWLPMWA
                     APNAIANGASLLSSLLDMAAALRVRGYEVHRSVDSLKAMAGLAGDKLRTLLPQMLPGR
                     EPRPQELAAISEAVASMPMLFLDDVTLKQFRNPEDPSLACYQALVNSRMGVDRLNRAG
                     LLGDLNLLRGDTSGGYSLEIHQLTSEPIISTLGLEVSSWSDPDSP"
BASE COUNT          472 a          946 c          885 g          474 t
ORIGIN      
        1 cctgtgacga atccacgctg cggcatctgc ttgaggcggg cccccacgtc cgcgaaggcg
       61 gcgtgctggt gttccagtcg cccctgcccc gggtgctggc gtttcgcgcc gatccgattc
      121 accgccttct gaagcagcac ggctacgtgg tcgagcagtg ccatcacggc caacgccgcg
      181 aactccacgt cgcgcgccgg tccccgcacg aatggctgaa ggccgcctga cgtgatcccc
      241 gcttccgatc tgtggatgct cggcctgcgg cctgggccgc agatcgccta cagcctgacg
      301 tggacgcagg cccaacccaa tgagccgctc aaggcgttca tcgccatcgc tgagcgcctg
      361 gtgcaggagg agtcgcccca tggagtgttc tgagtcccgc tccaccccgg ccggcaagta
      421 cgtcgtcgcc tcgcggctgg gccgctggcg ggtcttgcgc aacgactctg gcgtcggcgc
      481 cttctccgac cgcgacgagg ccgtgcgctt cgcctgtggc ttggcccgcg aacaggccgt
      541 ggcagggacc gtggccgtcg tcgtggtcca ggctgacgtc catgagatgc actgcttctc
      601 gccgccggtg ggcgcccacg ccgcggcgcc gtcgcccagg ctgcgactca tcgagagtga
      661 gcgatgacct cgcggcgcgg ccacaatttg aacgaggccc ggtaggttcg tctggggccc
      721 ctaggtcgtc ggctacgtca actggagcgt tctggtggcg agcaatttca tcagcgacga
      781 ggaattcgaa ccgcggctac aaggaggcgg ctaggacaga ccgaatttcg acgggccgag
      841 agtcaaatgc cgacccgcaa gaggctcact ccccatacca gctcaggtcg agggccatga
      901 gccgcatctg accgcgaact gttgaacctt cacgagacga catgaccaat ccacctcgac
      961 gacctgtcct gcatctcaag aacccgccgc ctctgccgcg gcccgcgcct gcggacgccg
     1021 gctggcggtg caaaccctgt ggcgctcaac tcgaagtcgg cgcggagctg gccgaccagg
     1081 acgtcgttcg ctgcccctcc tgcaacgctt cgctcggtcg cgcggaacag ttcagaggcg
     1141 atcctccgca gattcagcgg gtccgcgccc gcagggtcgg cccctagccg atcgaacggc
     1201 tatgggcgtc gggaagcctc gctggtgggc ccggcaggac tcgaaatacc tggcgaaaca
     1261 ggccaaatcc gacccgtgat accaacaatt gcaccaacag cctccgctgg ggcggtttcg
     1321 gcggcccaga tgaacgggtt gagatctgcg ccgcgccagc agcggaaatt ggcgtcttgg
     1381 cccgaggcgg actcctcgaa cgtcagctaa gggtcatagg cggacattgg agcccagccg
     1441 gaaagcgggc cttcggctag cgtcagaacg gcgccgtcag gatagcgcga tcgtccgtat
     1501 ccgcagataa cggggccaac caatattcga ctcgagccac gatgccctgc gtccgacgat
     1561 agacctttaa accggggctg aaacggcgga agctcaagct cgttaggcgt cgacgaattc
     1621 gtgcggggcg gcggggacgg catgtcgaga atccagaagc cgcgttacct tgatccgctg
     1681 ggcgaccccc ggttgggtga attgtcggtg tcgccgccgt tcctgttcca caatgttacg
     1741 gcgagagtat tcccgctcag agccaacatg gccgtgctca agcggttctg cgacaactac
     1801 ctgaacatgg acgtacctcc gagtatggtc cattacgcac cggcattacc ttacgtttac
     1861 ttgatggttc tgaactacgg gagcatggcc ccggcgtcgg tccgggcgca gaacgcgggc
     1921 tgggtcggcc agcacgaggt caccttcacg gtgccgctgc agcgctggcg cgtcgaaaac
     1981 gggcttctgg ccttcaagga ttgggcgacc gtttcgccct tcatttatgt agacgacgat
     2041 ctgtccctga ataccgggcg tgaggtctac ggctggaaca aggccgccgg cgacatcgag
     2101 tcgaccgtgc cgctttggct caccgatccg cgcgcgaaac tgcgtcagtt cgacctgagt
     2161 gtcggtgact acggcgaacc cgacgccggc gggatctcgg cccgtcgggc cctgctgcac
     2221 atcgacagcg acccgccgcc gtccttcggg cagttcccgc ccgatccccg caacccatgg
     2281 cttccgatgt gggcggcgcc gaacgccatc gccaacggcg cttccctcct ctcatcgctg
     2341 ctggacatgg cggccgcgct gcgagttcgc ggctacgagg tccatcgcag cgtcgactcg
     2401 ctgaaggcca tggccggcct ggccggcgac aagctgagga cgctcctccc gcagatgctg
     2461 ccaggccggg agccgcgacc gcaggaactg gccgcgatct ccgaggccgt cgccagcatg
     2521 ccgatgctgt tcctcgacga cgtgaccctg aagcagttcc gcaatcctga agacccttca
     2581 ctcgcctgct accaggcgct ggtgaattcc cgcatgggcg tcgaccggct gaaccgcgcc
     2641 gggcttctgg gcgacctgaa cctgctgcgc ggtgacacgt ccggcggcta cagcctcgaa
     2701 atccaccagc tgacctccga gccgatcatc tcgacgctgg gcctcgaggt gtcctcgtgg
     2761 agcgatccgg actcgcc
//
LOCUS       DATAJL010000636         2069 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_107698,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000636 DATAJL010000000
VERSION     DATAJL010000636.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107698"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VHN39_12230"
     CDS             complement(<1..451)
                     /locus_tag="VHN39_12230"
                     /inference="COORDINATES: protein motif:HMM:NF040438.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase domain-containing protein"
                     /protein_id="HEX2817160.1"
                     /translation="MREGSKTWTAVCAAVLAGLSLGLSGPAGAAVAQPVTKLITAAGA
                     PFLGLGAFDLGALGYVVEEFIVSGTATSYKLTGEPTADGVWTATAADTAPYATRIVVV
                     RPKDPKTFSGTVAVEWLNVTGGLDAGPDWTYSHREMLRSGMAYVGVSA"
     gene            598..1695
                     /gene="ychF"
                     /locus_tag="VHN39_12235"
     CDS             598..1695
                     /gene="ychF"
                     /locus_tag="VHN39_12235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEX2817161.1"
                     /translation="MALKVAIVGLPNVGKSTLFNALTQTAAAQAANYPFCTIEPNTGD
                     VAVPEPRLDALAAIIPSKEIIPSRINFVDIAGLVRGASKGEGLGNQFLANIRDCDAVA
                     FVARCFIDDDITHVEGKVDPLADLETIEIELMLADLESLEKRVSNLEKRAKTGDKESI
                     QTLRLVQLALTELNAGRPARKATVSAEDDKAWRMLQLLTSKPALYVSNVDEASAADGN
                     DMSRLVAERAKRDGADHVAISAQIESEIAMLDAGERGEYLETLGLTEPGLNKLIREAY
                     HLLGLQTYFTVGPKEARAWTIHRGDTAPQAAGVIHTDFEKGFIRAETIAYDDYVRLKG
                     EAGARDAGKLRQEGKEYVVKDGDVMNFRFNV"
     gene            1711..>2069
                     /locus_tag="VHN39_12240"
     CDS             1711..>2069
                     /locus_tag="VHN39_12240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2817162.1"
                     /translation="MGETIKIAGEDGFEFAAYHEPAMTPRKGGVIVIQEIFGLDKHVR
                     ADVERWAKMGYEAVAPSLYDRREPGFIVDHDPDGIKAGVAHAMGTPRDQALGDIAACR
                     DFLKTRGEKVCVVGYCYG"
BASE COUNT          363 a          765 c          659 g          282 t
ORIGIN      
        1 gggccgagac gcccacatag gccatgccgc tgcgcagcat ctcgcggtgg ctgtaggtcc
       61 agtcgggacc cgcgtcgagg ccgccggtga cgttgagcca ctccaccgcc accgtgccgc
      121 tgaaggtctt gggatccttc ggccggacga cgacgatgcg ggtggcgtag ggcgcggtgt
      181 cggcggctgt cgcggtccag acgccgtccg ccgtcggctc cccggtcagc ttgtaggagg
      241 tcgcggtccc ggagacgatg aactcctcga ccacatagcc gagcgcgccc aggtcgaagg
      301 cgcccagccc caggaacggc gcgcccgccg ccgtgatcag cttggtgacc ggctgcgcga
      361 ccgccgcgcc ggccgggccg gacagcccca ggctcagtcc cgccagcacc gccgcacaga
      421 ccgccgtcca cgttttcgat ccctcgcgca tcgcgttccc cgccctgatc cctcggccca
      481 tccgcggcat gtcgccggcc agacccttgc ggcgagccta ggcccgacct gccggctgtg
      541 ctaggtcgcc cgaccgctag cctctccaga gacccgaaag actccccaaa ggacatcatg
      601 gccctgaaag tcgccatcgt cggcctgccc aatgtcggca aatcgaccct gttcaacgcg
      661 ctcacccaga ccgccgcagc ccaggccgcg aactatccgt tctgcaccat agagcccaac
      721 accggcgacg tggcggtgcc cgagccgcgc ctggacgcgc tggccgccat catcccgtcc
      781 aaggagatca tcccctcgcg gatcaacttc gtggacatcg ccggcctggt gcgcggcgca
      841 tcgaagggcg agggcctggg caaccagttc ctggccaata tccgcgactg cgacgccgtg
      901 gccttcgtgg cccgctgctt catcgacgac gacatcaccc atgttgaggg caaggtggac
      961 cccctggccg acctggagac catcgagatc gagctgatgc tggccgacct ggagagcctg
     1021 gaaaagcggg tctccaacct cgagaagcgc gccaagaccg gcgacaagga atcgatccag
     1081 acgctgcggc tggtccagct cgcgctcacc gagctcaacg ccggccgccc ggcccgcaag
     1141 gccacagtct cggccgagga cgacaaggcc tggcggatgc tgcagctcct cacctcaaag
     1201 cccgccctct acgtctccaa cgtggacgag gcctccgcgg ccgacggcaa cgacatgtcc
     1261 cgcctggtgg ccgagcgcgc caagcgcgac ggggccgacc acgtcgcgat ctccgcccag
     1321 atcgagagcg agatcgccat gctcgacgcc ggcgagcgcg gcgaatatct ggagacgctc
     1381 ggcctcaccg agcccggcct caacaagctg atccgcgagg cctatcacct gctcggcctg
     1441 cagacctatt tcacggtcgg ccccaaggag gcccgcgcct ggacgatcca tcgcggcgac
     1501 acggccccgc aagccgccgg cgtcatccac accgacttcg agaagggctt catccgcgcc
     1561 gagaccatcg cctacgacga ctacgtccgc ctgaagggcg aggcgggcgc ccgcgacgcc
     1621 gggaaactcc gccaggaagg caaggagtat gtcgtcaagg acggcgatgt gatgaacttc
     1681 cgcttcaacg tctaaagggg acttcggacc atgggtgaga cgatcaagat cgcgggcgag
     1741 gacggcttcg aattcgccgc ctaccacgag cccgccatga cgccgcgcaa gggcggggtg
     1801 atcgtcatcc aggagatctt cggcctcgac aaacacgtcc gcgccgacgt cgagcgctgg
     1861 gccaagatgg gctacgaggc ggtcgcgccg tcgctctacg accgccgcga gcccggcttc
     1921 atcgtcgacc acgatccgga cggcatcaag gccggcgtcg cccacgccat gggcacgccc
     1981 cgcgaccagg cgctgggcga catcgccgcg tgccgcgact tcctgaagac ccgcggcgag
     2041 aaggtctgcg tggtcggcta ctgctatgg
//
LOCUS       DATAJL010000637         3062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_23944,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000637 DATAJL010000000
VERSION     DATAJL010000637.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3062
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23944"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..1102)
                     /locus_tag="VHN39_12245"
     CDS             complement(125..1102)
                     /locus_tag="VHN39_12245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007674990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase"
                     /protein_id="HEX2817163.1"
                     /translation="MTEMMTAIAIEGGKGPAEALKPVQIPRPEPKDGQILIRVHAAGI
                     NRPDIIQRLGFYPPPPGSPETMGLEVAGEVVVGSGRWKAGDKVCALLGGGGYAEYAVC
                     DARHALPIPKGLDYVQAAGLPETVFTVFANVFEHGRLQPGETLMVHGATSGIGTTAIQ
                     MAKAHGAKVIATARGADKAATALKLGADVAVDTKTQDFAEIAKSEGGCDVVLDMVGGD
                     YFAKDLDALKMDGRIVFIASLGGGDVTLSIGRLMQKRGVVTGSTLRPRSADEKARLAA
                     AVEALVWPWIEAGKVSPQVDATFPLVDAAKAHSHLEGGAHIGKIVLIAA"
     gene            1213..1407
                     /locus_tag="VHN39_12250"
     CDS             1213..1407
                     /locus_tag="VHN39_12250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008263967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1192 domain-containing protein"
                     /protein_id="HEX2817164.1"
                     /translation="MEEPAEVRVGRGQRLIEAVREDLELFGVAELEERIEVLQSEIAR
                     CEAQIDRKKSGRAAADALFG"
     gene            1516..2028
                     /locus_tag="VHN39_12255"
     CDS             1516..2028
                     /locus_tag="VHN39_12255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1465 family protein"
                     /protein_id="HEX2817165.1"
                     /translation="MSDQNAPSTPWRAEVIQDFARSELFQRTFQEGMDLVEETAGYLD
                     GAGRQASKLLSRNAALAYAAESMRLTTRLMQVASWLLVQRAVREGDMPPDAACEDRYR
                     LAGEDVCRATGEGADDLPPPLQILLDRSERLYERVRHLDRRMYVENEADEAPHPVLSQ
                     HDRLKTAFGS"
     gene            complement(2118..2342)
                     /gene="rpmE"
                     /locus_tag="VHN39_12260"
     CDS             complement(2118..2342)
                     /gene="rpmE"
                     /locus_tag="VHN39_12260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017506001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEX2817166.1"
                     /translation="MKQDTHPDYHFITVVMTDGTSYQTRSTYGKEGATLNLDIDPKTH
                     PAWTGGGHQMLDRGGRVSRFNAKFGGFTRK"
     gene            2480..>3062
                     /locus_tag="VHN39_12265"
     CDS             2480..>3062
                     /locus_tag="VHN39_12265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter transmembrane domain-containing
                     protein"
                     /protein_id="HEX2817167.1"
                     /translation="MSESGVDAAVAGRPTAGQALAQSLDEAAERRAKSRNVGALGRLV
                     PFAAGHRLDAAAAGVFLISAAAASLALTGALRLLTDHLNGPQVTAASVAPWFRLLGVV
                     ALALALSSALRYFFVTKLGERIVADLRKATYAHILSLDPAFFLMTRTGEVLSRLTTDI
                     QIVENLLTTSISVALRNVLMLVGGLGYMLIVSPK"
BASE COUNT          489 a         1020 c         1036 g          517 t
ORIGIN      
        1 gttgcaaccc attttcgaac acaaggtttg caaaaataca cggataacac tgatttttgc
       61 caccagtttc aaaaacatgg tttgctgagc ggcaacctcg ccggcgtgtt gatgcaactc
      121 tgggttaggc ggctatcaga acgatcttgc cgatgtgggc gccgccctcc aggtgggaat
      181 gagccttggc ggcgtcaacc agcgggaagg tcgcatcgac ctggggcgaa accttgccgg
      241 cctcgatcca aggccagacc agagcctcca cagccgcggc caggcgtgcc ttctcgtcgg
      301 cgctgcgcgg gcgaagcgtc gagccggtca caaccccgcg tttctgcata agccggccga
      361 tcgagagcgt cacgtcgccg ccgccgaggc tggcgatgaa gacgatgcgg ccgtccatct
      421 tcaacgcgtc caggtccttg gcgaagtagt cgccgccgac catgtcgagc accacgtcgc
      481 agccgccctc ggatttggcg atctcggcga aatcctgggt ttttgtgtcc acagccacgt
      541 cggcgccgag tttaagggcg gtggccgcct tgtcagcgcc ccgggccgtg gcgatcacct
      601 tcgccccatg ggccttggcc atctggatcg ccgtggtgcc gatgccggag gtggcgccat
      661 gcaccatcag cgtctcgccg ggctgtaggc gcccatgctc gaagacgttg gcgaacaccg
      721 tgaacaccgt ctccggcaga cccgcggcct gcacatagtc cagacctttg gggatcggca
      781 gggcgtggcg cgcgtcgcag acggcgtatt ccgcatagcc gccgccgccc agcagggcgc
      841 agaccttgtc gccggccttc cagcgccccg agcccacgac cacctcgccg gccacctcca
      901 ggcccatggt ctccggcgat ccgggcggcg gcggatagaa gcccaggcgc tggatgatgt
      961 cgggccggtt gatcccggcc gcatgcacgc ggatcaggat ctggccgtct ttgggctccg
     1021 gccgggggat ctgcacgggt ttcagcgcct cggcggggcc cttgccgcct tcgatggcga
     1081 tcgcggtcat catctcagtc atgtggacgg ctccggcaaa gctgtgggcc gctgcctggc
     1141 gcaaacttgc gcttcgcggc tcagcgcggt tggatagcgc cccaacggga aaccggaaag
     1201 gtagtgctcg ccatggaaga gcctgcggaa gtccgagttg gccgcggcca gcggctcatc
     1261 gaggccgttc gcgaggacct ggaactgttc ggcgtggcgg aactggagga gcggatcgaa
     1321 gttctgcaat cggaaatcgc ccgctgcgaa gcccagatcg accgcaaaaa gtcgggccgg
     1381 gccgctgcag acgcgctctt cggctagttt gccacaggtt ccggggcgca aaatggtcca
     1441 gatcggctgg catgggggtt gcactgacgg tttttcgcga ccgcccggcg ggctgagtat
     1501 agggttgagc acgttatgag cgaccagaac gccccttcaa cgccatggcg cgccgaggtc
     1561 attcaggact tcgcgcgctc cgagctgttc caacggacct tccaggaggg catggacctc
     1621 gtggaggaaa ccgccggcta tctggacggc gccgggcgcc aggcctcgaa gctgctctcc
     1681 cgtaatgcgg cgctggccta tgcggccgag agcatgcggc tgaccacgcg cctgatgcag
     1741 gtggcctcgt ggctcctggt gcagcgcgcg gtgcgcgagg gcgacatgcc gccggacgcc
     1801 gcctgcgagg accgctaccg cttggcgggc gaggacgtct gccgcgccac cggcgagggc
     1861 gccgacgacc tgcccccgcc cctgcagatc ctgcttgacc gctcggaacg gctctacgag
     1921 cgggtccgcc acctcgaccg gcgcatgtac gtcgagaacg aggccgacga ggcgccgcac
     1981 ccggtgttgt cccagcacga ccgcctgaag accgccttcg ggagctgagc tccccgccgc
     2041 accggcaaac gcaaaacgcc gcggaggtcg ccccccgcgg cgttttcgca ttcaaggctc
     2101 cgactggagc cctggcgcta tttgcgcgta aaaccgccga acttggcgtt gaagcgcgac
     2161 acgcggccgc cgcggtcgag catctggtgg ccgccgccgg tccaggccgg gtgggtcttc
     2221 ggatcgatat ccaggttcag cgtcgcgcct tccttcccgt aggtggaacg ggtctggtag
     2281 ctcgtgccgt ccgtcatcac cacggtgatg aagtgatagt ccggatgggt gtcttgtttc
     2341 atcggatcag cgcctgacgt aaggaagcat cgaaaacgta tcggcggccg ccttgcgaag
     2401 ggggccgtcc gaggaagccg ggcgtataga gaaacgctgg ctcaaaagca aggtgtgagc
     2461 gtcccatgag tgatccggca tgagcgagtc cggcgtcgat gcggccgtgg ccggcaggcc
     2521 gacggcgggc caggctctgg cgcagtctct cgacgaggcc gccgagcgcc gcgccaagag
     2581 ccgcaatgtc ggggcgctgg gccggctggt cccgttcgcc gctggccacc ggctggacgc
     2641 ggcggcggca ggcgtcttcc tgatctccgc agcggccgcc agcctggcat tgaccggggc
     2701 gctgcgcctg ctcaccgacc atctcaatgg cccgcaggtc acggcggcga gcgtcgcgcc
     2761 ctggttccgg ctactggggg tggtggcgct ggccttggcg ctctcctcgg cgctccgcta
     2821 cttcttcgtc accaagctcg gcgagcggat cgtggcggac cttcggaaag ccacctacgc
     2881 ccacatcctg tcgctggacc cggccttctt cctgatgacc cggaccgggg aggtgctgtc
     2941 gcgcctgacc accgacatcc agatcgtcga gaacctgctc accacctcga tctcggtggc
     3001 gcttcgcaac gtcctgatgc tggtgggcgg gctgggctac atgctgatcg tcagcccgaa
     3061 gc
//
LOCUS       DATAJL010000638         1624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_37221,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000638 DATAJL010000000
VERSION     DATAJL010000638.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1624
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37221"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..807)
                     /gene="thrB"
                     /locus_tag="VHN39_12270"
     CDS             complement(<1..807)
                     /gene="thrB"
                     /locus_tag="VHN39_12270"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEX2817168.1"
                     /translation="MAVYTDITDEELAGLLADFDLGQALSLKGVAEGVENSNFLLETE
                     TGRYFLTVYERRVKASDLPFFLELLRWIAGRGFPSATPIPDREGRLLKAVRGKPCAIV
                     SFLSGLAVRRPTAAHCREAGAGLAQLHLATQGFPLTRANDLGQAAWAPLFSGLHGAAE
                     DLKPGLAATISSDLELLASRWPKGLPEGVIHADFFPDNVFFKQGKFAGAIDFYFACAD
                     AFAYDIAVALNAWCFEPDGSFNVTAARAFVAGYESRRPLSTEERRALPVLA"
     gene            complement(859..>1624)
                     /locus_tag="VHN39_12275"
     CDS             complement(859..>1624)
                     /locus_tag="VHN39_12275"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024863.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEX2817169.1"
                     /translation="AQGPRYVAMGSSYAAGPGITRPADDPPDRCGRSADNYAHQLARR
                     RGLDLADVSCGGAVTASILAPWNGHPAQIDAVTPATSLVTVTIGGNDVGLIAGLGAGA
                     CRELAGRKSDAEALAKCPAPARADDAAYVRLAAAMKEIAAQVRARAPKARLVFVDYLT
                     ILPPSGVCAVTPLSLPDADASRETARRVAEITQKTARENGALLVKASALSAGHDACGA
                     TPWMNGSPVPPGVAAFHPNLAGMTAVADALDRALGR"
BASE COUNT          239 a          589 c          575 g          221 t
ORIGIN      
        1 ggccaggacc ggtagcgcgc gccgctcctc agtcgatagc ggacgccggc tctcatagcc
       61 ggcgacgaag gcgcgggcgg cggtgacgtt gaaactgccg tccggctcga agcaccaggc
      121 gttcagcgcc acggcgatgt cgtaggcgaa ggcgtctgcg caggcgaaat agaagtcgat
      181 ggcgccggcg aatttgccct gcttgaagaa cacgttgtcc gggaagaagt cggcgtggat
      241 caccccttcc ggcaagccct tcggccagcg cgaggccaac agttcgagat cggacgatat
      301 ggtcgcggcc aggcccggct tgaggtcttc cgcggcgccg tggagccccg aaaacagcgg
      361 cgcccaggcg gcctgcccca ggtcgttggc ccgcgtcagc gggaacccct gcgtcgccag
      421 gtgcagttgc gccaggcccg cgccggcttc ccggcaatgg gcggcggtgg gccggcgcac
      481 cgccaggccc gacaggaacg agacgatggc gcagggcttg ccgcgcacgg ccttcagcag
      541 ccgcccctcg cggtcgggga tcggggtggc gcttgggaac ccacgccccg cgatccagcg
      601 caacagctcc aggaagaacg gcaggtcgga ggctttcacg cggcgctcat agaccgtcag
      661 gaaatagcgc ccggtctcgg tctccagcag gaagttggag ttctccaccc cctcggccac
      721 gcccttcagg ctcaacgcct gacccaggtc gaagtcggcc agcagccctg ccagctcctc
      781 atcggtgatg tcggtataga ccgccatggt caggggatgc ggtaggtcgc cccggtggtc
      841 aagacggcgg gggtcaggtc agcggcccag cgcgcggtcc agggcgtcgg ccacggcggt
      901 catgccggcc aggttggggt gaaacgccgc cacgccgggc gggaccggag acccgttcat
      961 ccagggcgtc gcgccacagg catcgtggcc cgccgacagg gccgaggcct ttaccagcag
     1021 cgctccgttc tcccgcgcgg tcttctgcgt gatctccgcg acccgacgcg cggtctcacg
     1081 gctggcgtcg gcgtcgggca gcgacagcgg cgtcaccgcg cagaccccgc tcggcggcag
     1141 gattgtcaga tagtccacga acaccagccg ggccttcggc gcgcgggcgc gaacctgggc
     1201 tgcgatctcc ttcatcgccg ccgccagccg gacataggcc gcgtcgtccg cccgcgccgg
     1261 cgccgggcac ttcgccagcg cctcggcgtc ggacttgcgc cccgccagct cgcggcaggc
     1321 gccggctccc aggcccgcga tcaggcccac gtcgttgcca ccgatggtga cggtgaccag
     1381 gctcgtcgcg ggcgttaccg cgtcgatctg cgcgggatgg ccgttccacg gcgccaggat
     1441 gctggccgtc acagccccgc cgcagctcac gtctgcaaga tcgagccccc gccgccgcgc
     1501 cagctgatgg gcgtagttgt cggccgagcg cccgcaccgg tccggcggat cgtccgccgg
     1561 ccgggtgatg cccggcccgg cggcgtagga actccccatg gccacatagc gcggcccttg
     1621 cgcc
//
LOCUS       DATAJL010000639         2970 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_83464,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000639 DATAJL010000000
VERSION     DATAJL010000639.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83464"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2187
                     /locus_tag="VHN39_12280"
     CDS             <1..2187
                     /locus_tag="VHN39_12280"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817170.1"
                     /translation="PMAMLDGELAILEVNTAFADLLDVPAASLIGEPLGKRLRAAATD
                     FPDSDGVQTFGFQCADGPRWLRLDLQAHGGQILAILFDVTGERTVLERMKADFAARGR
                     LMHDAEVGIWRYDPDAELYHFPSELALGHGGNQEPVPVAMLEMIQHEDDRAIDAAIRE
                     RLTQEEGTAEADMRYRTGDGGWRVLRVLYRSGRRTRSGRYEMYGLSQNVTDLAQARDE
                     ANGSAGRLKLALTAARAGVFGYDYAKAEYWLSPEFRDLMGQSALEAAAAAEDPRVIFH
                     PDDRDTMRAMGVESVKAGNAVSSEARVVRPEGPLWVRVYWQTENDAAGNPARGVGLLL
                     DIDDQKRQELALTEARQLAESATASKSSFLASVSHEIRTPMNGIVGVLNLLKREGLST
                     EGRDLLGEALACSDMLAQLIDDVLDFSKMEAGKLDVTPAPTDPAAVMASVVALLHPQA
                     DGKNLYLRAVSEPQVAEAARWAMIDPVRLRQCLFNIIGNAVKFTEAGGVEVRMAFKGE
                     GPARKLRVEVHDTGVGVPEAAKAALFDRFQQAHTGATRKFGGTGLGLAISRSLAELMG
                     GEMGFESTEGVGSVFWFEISAPRAEPVAAAPQAEAGDAPLTGLKILVVDDNRTNRLVG
                     LKSLEALGAEAETADSGEAAIQAAAKGGYDLVLMDVNMPGMDGMEATRRIRELPQPHA
                     GVPIVALTADVMTHHQAAYHAAGMNGFVPKPFSPGQLLSEIVRIAG"
     gene            2304..>2970
                     /locus_tag="VHN39_12285"
     CDS             2304..>2970
                     /locus_tag="VHN39_12285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HEX2817171.1"
                     /translation="MGLSLSKTALFAAAVFAAPAARAAAPVSPHDLALLNRLTWGQSA
                     SSAAEMQSAGPRAWLERQLRPQAADRPPADVQAQIDALSVSRTPMAGLVVEMDAQIKT
                     ANKLTDPDQKKAAQQAYQQALTQLGRDAATRQLLRDVYSPDQLQEQMTWFWLNHFNVH
                     MYKRDVRAMVGDYEDQAIRPRALGKFRDLLEATLKHPAMLRYLDNDQNAANHINENYA
                     REIM"
BASE COUNT          490 a         1087 c          974 g          419 t
ORIGIN      
        1 cctatggcca tgctggatgg cgaactcgcc atactggagg tcaacaccgc ctttgcggac
       61 ctgcttgatg tcccggccgc cagcctgatc ggcgagccgc tgggcaagcg cctgcgcgcg
      121 gcggcgaccg acttcccgga cagcgatggg gtgcagacct tcggcttcca gtgcgccgat
      181 gggccgcgct ggctgcgcct cgacctgcag gcgcatggcg gtcagatcct ggccatcctg
      241 ttcgacgtca ccggcgaacg cactgtgctt gagcggatga aggccgactt cgccgcccgc
      301 ggccggctga tgcacgacgc cgaggtgggg atctggcgct acgaccccga cgccgaactc
      361 taccatttcc ctagcgagct cgcgcttggc catggaggca accaggagcc cgtacctgtc
      421 gccatgctgg agatgatcca gcacgaggac gaccgcgcca tcgacgccgc gatccgcgag
      481 cgcttgaccc aggaagaggg cacggccgag gccgacatgc gctaccggac cggcgacggc
      541 ggctggcggg tgctgcgcgt gctctatcgc agcggccgca ggacccgctc cggccgctac
      601 gagatgtatg gcctcagcca gaacgtcacc gacctggccc aggcccgcga cgaggccaac
      661 ggcagcgccg gacgcctgaa gctggcgttg accgccgccc gcgccggggt gttcggttac
      721 gactacgcca aggccgaata ctggctgtcg ccggagttcc gcgacctgat gggccaaagc
      781 gccctcgaag ccgcggcggc cgctgaagac ccccgggtga tcttccatcc cgacgaccgc
      841 gacaccatgc gcgccatggg cgtcgaaagc gtcaaggccg gcaatgccgt ctccagcgag
      901 gcgcgcgtcg ttcggccgga gggtcctctc tgggtccggg tctattggca gaccgaaaac
      961 gatgccgccg ggaaccccgc gcgcggtgtc ggcctgcttc tcgatatcga cgaccagaag
     1021 cgccaggagc tggcgcttac cgaggcccgc cagctggcgg aatcggccac cgcgtccaaa
     1081 tccagcttcc tggcctcggt cagccatgag atccgcaccc cgatgaacgg cattgtgggc
     1141 gtgctgaacc tcctgaagcg cgagggcctg agcaccgagg gccgcgacct cctgggcgaa
     1201 gcgctcgcct gcagcgacat gctggcccag ttgatcgacg acgtgctcga cttctccaag
     1261 atggaagccg gcaagctcga cgtgacgccg gcgcccaccg atccggccgc ggtgatggcc
     1321 agcgtcgtgg ccctgctgca cccccaggcc gacggcaaga acctttatct gcgcgccgtc
     1381 tccgagcccc aggtcgccga ggcggcccgc tgggcgatga tcgacccggt ccggctgcgc
     1441 cagtgcctgt tcaacatcat cggcaacgct gtgaaattca ccgaggccgg cggcgtcgag
     1501 gtgcggatgg ccttcaaggg agaggggccg gcccgcaagc tgcgcgtcga ggttcacgac
     1561 accggcgtcg gcgtccccga ggcggccaag gccgcgctct tcgaccgctt ccagcaggct
     1621 cacaccgggg ccactcgtaa gttcggcggg acaggcctcg gcctggcgat ctcgcgcagc
     1681 ctcgccgagc tgatgggcgg cgagatgggc tttgagtcca ccgagggcgt cggctcggtc
     1741 ttctggttcg agatttccgc gccgcgcgcc gagcccgtgg ccgccgcgcc ccaggccgag
     1801 gccggcgacg cccccttgac cgggctgaag atcctggtcg tcgacgacaa ccggaccaac
     1861 cgcctggtgg gcctcaagtc cctagaggcc ctgggcgcgg aggccgagac cgccgacagc
     1921 ggcgaggcgg ccatccaggc tgccgccaag ggcggctacg acctggtcct gatggacgtc
     1981 aacatgcccg gcatggacgg catggaggcc acccgccgca tccgcgagct gccgcagccc
     2041 catgccggcg tgccgattgt ggcgctcacc gccgacgtca tgacccacca tcaggcggcc
     2101 tatcacgccg cgggcatgaa cggctttgtg cccaagccct tctcgccggg ccaactgctc
     2161 tccgagatcg tccgcatcgc cggctagtcc acggccaggc tacgccccgt caggaccgcc
     2221 gcgcggcctt agtggggtcg ggatttcgtg gttctgtaac gccgcagcaa caaggcctgc
     2281 gagccgccga gacgccacag gacatgggcc tgagcctatc caagacagcc cttttcgcgg
     2341 ccgccgtctt cgccgcgccg gcggcgcgcg ccgcagcgcc ggtgagcccg cacgacctcg
     2401 ccctcctcaa ccgcctcacc tggggccagt cggcgagctc ggccgccgag atgcagtccg
     2461 ccggcccccg cgcctggctc gagcgccagc ttcgcccaca ggccgccgat cggccgccgg
     2521 cagacgtcca ggcccagatc gacgccctgt ccgtctcgcg cacgcccatg gccggactgg
     2581 tcgtggagat ggacgcccag atcaagacgg ccaacaagct caccgatccc gaccagaaga
     2641 aggccgccca gcaggcctat cagcaggccc tgacccagct cggccgtgac gccgcgactc
     2701 gccagttgct ccgcgacgtc tattcgccgg accagctgca ggaacagatg acctggttct
     2761 ggctgaacca cttcaatgtc cacatgtaca agcgcgacgt ccgcgccatg gtcggcgact
     2821 acgaggacca ggcgatccgg ccccgcgcgc tgggaaagtt ccgcgacctc ctggaggcca
     2881 ccctcaagca cccggccatg ctgcgttatc tggacaacga ccagaatgcc gccaaccaca
     2941 tcaacgagaa ctacgcccgc gagatcatgg
//
LOCUS       DATAJL010000640         5022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_120590,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000640 DATAJL010000000
VERSION     DATAJL010000640.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5022
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120590"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VHN39_12290"
     CDS             complement(<1..210)
                     /locus_tag="VHN39_12290"
                     /inference="COORDINATES: protein motif:HMM:NF012799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX2817172.1"
                     /translation="MLFIDARGPADHLTLRAARALSSADVLVCDEGADADILALARRD
                     AERTGPQAPERLAELAAQGLRVARLI"
     gene            complement(171..803)
                     /locus_tag="VHN39_12295"
     CDS             complement(171..803)
                     /locus_tag="VHN39_12295"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HEX2817173.1"
                     /translation="MHAFPAFFPLAGKTVVIVGVGEQAEAKVRLFAGSPATIQRLEGE
                     AALSPQAYEGAALAFIATDDDAFAEAAAGAARAAHVPVNVVDRPALCDFTTPAVIDRG
                     EVVAAIGTGGASPMLATLLRHDIEARVPEGAGRVVALFASLQDEVRKALPEPHRRRAF
                     RRSALTGPAAEAAMAGTRPRPCGCCARRWGATSRGPAPCCSSTPAVRPTI"
     gene            927..1403
                     /locus_tag="VHN39_12300"
     CDS             927..1403
                     /locus_tag="VHN39_12300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX2817174.1"
                     /translation="MTTTLNINGKAMPVEAAADTPLLWVLRDELGLTGTKYGCGIAQC
                     GACTVLADGQPIRSCSTPIAALATAKITTIESLGGAHPLQVAWVKNDVPQCGYCQSGQ
                     LMSATALLAQTPKPTDAEIDAAMSGNICRCGTYQRIHAAIKEASGQLPAKPAKVKV"
     gene            1414..3615
                     /locus_tag="VHN39_12305"
     CDS             1414..3615
                     /locus_tag="VHN39_12305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEX2817175.1"
                     /translation="MNQFFKTPALAVPTRRQALGIGATLAGGALLIGCSPTAMGKMMA
                     VGAKHDFGAFGPFIKVAADGAVTVVSKHIEFGQGNHAGLAAIAAEEMDADWDKVSVVQ
                     SPANASAYANTSFGMQGTGGSSAISNSWMQLRNAGAAARAMFVQAAATTWGVPAKDIS
                     VQNGVVSHVASGKQAHFGELVAAAAKVTPPQKPVLKDPKSFTLIGTDRVRRKDSQAKS
                     SGTARFTQDVHLPNMLTAMVAHAPKFGATVASFDASAARKIPGVVDVFQIPTGVAVIA
                     DNTWAARKGRDAVVVKWDETKAEKRGSDQIKAEWTSLAAGPAPPDSKLKWYPFEARGD
                     VASAGSGAAALETTYDFPYLAHASMEPLNCVAIVDGHHAKLIHGSQIPTLDQLNTAKI
                     VGNLPGAIEIETLFAGGSFGRRANFQSDYVAECVHVAKHIGKGRPVKLIWTREDDMTG
                     GYYRPLVHHAVRISVDKDGFPAAWRHRVVAQSLNKGSPLGAGGLDAGAVEGAKGSPYL
                     KATPVVDGQAISPDSPVPILWLRSVGATHTAFVMEHTIDQLAKKAGKDPVDYRRTLYA
                     RAGANRHMAVLNLAAEKAGWGTPAPAGWTRGVAVHESFGSVVAQIAEVKLVNGEPRVG
                     RVVTAIDCGTAISPDQIAAQMEGGTCYGLSAALFGKITLKDGEVQEHNFDAYRVLRHN
                     EAPTVETYIVASSNPPSGVGEPGMPVIAPAVANALLAMGQPATTSLPFVKT"
     gene            3686..4573
                     /locus_tag="VHN39_12310"
     CDS             3686..4573
                     /locus_tag="VHN39_12310"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX2817176.1"
                     /translation="MSQSPASYGQVCAGLKSQLHNRGVLVITFDAPGRMNALDQAMKR
                     DLIELVTRAQMDDAVRVLVFTGEGRAFCAGDHMGGYQKAEPASVPRIGAGHATGIGTV
                     NALRVYSQALNLAVRNLDKLTIAAINGPAIQTGLSLALCCDFRIGSTAAKLGSATLRF
                     ALLPDEGGHYLLVQHLGLARALDFVLRKRIATAQEALDLGLLTEVVEPEALIPAAMAL
                     ADELAEGPQVAMRMLKRSLYNAAESSFAQALDDIAVRTAVTDHHPDARDGGASFREKR
                     APKFNAWLDTHPQDAGKGH"
     gene            4577..>5022
                     /locus_tag="VHN39_12315"
     CDS             4577..>5022
                     /locus_tag="VHN39_12315"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2817177.1"
                     /translation="MAYSDILYRVQDGVAVVTLNRPDRLNAWRAEMERDVRAAMRAAA
                     DDDTVRVIVLTGAEAAARAGADMGLLQTTVDAGQAGSTPAAAAAPAPFDDAARDDFKR
                     QYSFFPAVPKPIIAAINGACAGLGMVMALYADIRFAADAAVFTTAFS"
BASE COUNT          790 a         1864 c         1695 g          673 t
ORIGIN      
        1 gatcagccgg gcgacccgca ggccctgggc ggccagctcc gccagccttt cgggcgcctg
       61 gggcccggtg cgctcggcgt cgcggcgggc cagcgccagg atgtcggcgt cggcgccttc
      121 gtcacagacc aggacgtcgg ccgaggacag agcccgcgcg gcgcgcaggg tcagatggtc
      181 ggccggaccg cgggcgtcga tgaacagcac ggcgccggcc cccggctcgt cgcgccccag
      241 cgcctcgcgc agcagccgca cggcctcggc ctggtcccgg ccatggcggc ctcggccgcc
      301 gggccggtca gggccgagcg ccggaaggcg cggcggcgat gcggctccgg cagcgccttg
      361 cgcacctcat cctgcaggct ggcgaagagg gcgacgaccc ggcccgcgcc ttccggcacc
      421 cgggcctcga tgtcgtgccg cagcagggtc gccagcatgg gcgaggcgcc gccggtgccg
      481 atggcggcca ccacctcgcc ccggtcgatc accgccggcg tggtgaagtc gcagagcgcc
      541 ggccggtcga ccacgttgac cggcacatgg gccgcccgcg ccgcgccggc cgcggcttcg
      601 gcgaaggcgt cgtcgtcggt ggcgatgaag gccagcgccg cgccctcgta ggcctgcggc
      661 gatagcgctg cctcgccctc cagccgctgt atggtggccg gcgagcccgc gaacaggcgg
      721 accttggcct cggcctgttc gcccacgccg acgatcacca cggtcttgcc ggcgaggggg
      781 aagaaggcgg gaaaggcgtg catcggcggc gaggcctccg ggcgggacag gctctgcata
      841 gctgaggcgg cgcatgggcg ccaacgcgca cttacgcgcc agtctaaaca gcgttaggat
      901 ggcggactcg cgacggggat attcacatga cgacgacgct caatatcaac ggcaaggcca
      961 tgccggttga ggccgcggcc gacacgccgc tgctgtgggt cctgcgcgac gagctgggcc
     1021 tcacgggcac gaagtacggc tgcggcatcg cccagtgcgg cgcctgcacg gtgctcgccg
     1081 acggccagcc gatccggtcc tgctcgacgc cgattgcggc gctcgccacg gcgaagatca
     1141 ccaccatcga gagcctgggc ggcgcccatc ccctgcaggt cgcctgggtg aagaacgatg
     1201 tgccgcaatg cggctactgc cagtcgggcc agctgatgag cgccacagcg ctcctggccc
     1261 agacgccgaa gcccaccgac gcggagatcg acgcggccat gagcggcaac atctgccgct
     1321 gcggcaccta ccagcgcatc cacgccgcca tcaaggaagc ctccggccag ctcccggcca
     1381 agcccgccaa ggtcaaggtc tgaggcgcgc gccatgaacc agttcttcaa aactcccgcc
     1441 ctcgccgtcc cgacccgccg ccaggcgctg ggcatcggcg cgaccctggc cggcggcgcc
     1501 ctcttgatcg gctgctcgcc caccgccatg ggcaagatga tggcggtggg cgccaagcac
     1561 gacttcggcg ccttcggccc gttcatcaag gtcgccgctg atggcgccgt gaccgtggtc
     1621 tccaagcata tcgaattcgg tcagggcaat cacgcgggcc tggccgccat tgccgccgaa
     1681 gagatggacg ccgactggga caaggtgagc gtcgttcagt cgccggccaa cgcctcggcc
     1741 tacgccaaca ccagcttcgg catgcagggc accggcggat cctcggcgat ctccaacagc
     1801 tggatgcagc tgcgcaacgc cggcgcggcg gcccgcgcca tgttcgtcca ggccgccgcg
     1861 accacctggg gcgtgccggc gaaggatatc tccgtgcaga acggcgtcgt cagccacgtg
     1921 gccagcggca agcaggcgca cttcggcgag ctggtggccg ccgccgccaa ggtcaccccg
     1981 ccgcagaagc cggtgctgaa ggaccccaag agcttcactc tgatcggcac ggaccgggtc
     2041 cggcgcaagg actcgcaggc caagtccagc gggaccgcgc gcttcaccca ggacgtccac
     2101 ctgcccaaca tgctgaccgc catggtcgcc cacgccccga agttcggggc aaccgtcgcc
     2161 tcgttcgacg ccagcgcggc caggaagatc cccggcgtgg tggatgtctt ccagattccc
     2221 accggcgtcg ccgtcatcgc cgacaacacc tgggcggccc gcaagggccg cgacgcggtg
     2281 gtggtcaagt gggacgagac gaaggccgag aaacgcggct ccgaccagat aaaggccgag
     2341 tggaccagcc tggccgcggg cccggcgccg ccggactcca agctcaaatg gtatccgttc
     2401 gaggcgcgcg gcgacgtggc ctcggcgggc tccggcgcgg cggcgctcga gaccacctac
     2461 gacttcccgt acctggccca tgccagcatg gagccgctga actgcgtggc gatcgtggat
     2521 ggccatcacg ccaagctgat ccatggctcg cagatcccga cgctggacca gctcaacacc
     2581 gccaagatcg tcggtaacct gccgggcgcc atcgagatcg agaccctgtt cgccggcggc
     2641 agctttggcc gccgcgccaa cttccagtcc gactacgtcg ccgagtgcgt ccacgtggcc
     2701 aagcacatcg gtaaaggccg gccggtgaag ctgatctgga cgcgggagga cgacatgacc
     2761 ggcggctact accggccctt ggtccatcac gcagtccgga tcagcgtcga caaggacggc
     2821 tttccggcgg cctggcgcca ccgggtcgtg gcccagtcgc tcaacaaggg ttctccgctc
     2881 ggggccggcg ggttggacgc cggcgcggtc gaaggcgcca agggctcgcc ctacctgaag
     2941 gcgacccctg tggtcgacgg ccaggcgatc agtccggatt ccccggtgcc gatcctgtgg
     3001 ctgcgctcgg tcggggccac tcacacggcc ttcgtcatgg agcacaccat cgaccagctg
     3061 gcgaagaagg ccggcaagga ccctgtcgac tatcgccgca ccctctacgc cagggccggc
     3121 gcgaaccggc acatggcggt cttgaacctg gccgccgaga aggccggctg ggggaccccc
     3181 gcgccggccg gctggacgcg cggcgtggcg gtgcacgaga gcttcggctc ggtcgtggcc
     3241 cagatcgcgg aggtcaagct ggtgaacggc gagccgcgtg tcggccgcgt ggtcacggcc
     3301 atcgattgcg gcacggcgat ctcgcccgac cagatcgcgg cccagatgga gggcggcacc
     3361 tgctacggcc tgtcggcggc cttgttcggc aagatcacgc tgaaggacgg cgaggtgcag
     3421 gagcacaact tcgacgccta ccgcgtgctg cgccacaacg aggcgccgac ggtggagacc
     3481 tatatcgtgg cctcgtctaa cccgcccagc ggggtcggag agcccgggat gccggtgatc
     3541 gccccggccg tcgccaacgc gctcctggcc atgggccagc cggccaccac cagcctgccg
     3601 ttcgtgaaaa cctagggact ggccgcgctc agttgatgcg cggggcggat tattcgctca
     3661 cgatgggctg agaggagcgc ccgccatgag ccaatccccc gcgtcctacg gtcaagtctg
     3721 cgccggcctg aagtcccaac tgcataaccg tggcgtgctg gtgatcacct tcgatgcgcc
     3781 cgggcggatg aacgcgctcg accaggcgat gaagcgcgac ctcatcgagc tcgtcactcg
     3841 ggcccagatg gacgacgccg tccgcgtgct ggtgtttacc ggcgagggcc gagcgttctg
     3901 cgccggcgac cacatgggcg gctatcagaa ggccgaaccc gccagcgtgc cgaggatcgg
     3961 cgccggccac gccaccggca tcggcaccgt caatgcgctc agggtctatt cccaggcgct
     4021 aaacctggcc gtccgcaacc tcgacaagct gaccatcgct gcgatcaacg gcccggccat
     4081 ccagaccggc ctttcccttg cgctctgctg cgacttccgc atcggctcga cggcggcaaa
     4141 gctcggcagc gccaccctgc gcttcgccct gcttcccgac gagggcggcc actacctcct
     4201 ggtccagcac ctgggcctcg cccgcgccct cgatttcgtg ctccgcaaac ggatcgccac
     4261 cgcccaggag gccctcgacc ttggcctgct caccgaggtg gtcgagcccg aagccctgat
     4321 ccccgccgcc atggcgctcg ccgacgagct ggccgagggc ccgcaggtcg ccatgcgcat
     4381 gctcaagcgc tcgctctaca acgccgcgga gtcgagcttc gcccaggcgc tcgacgacat
     4441 cgccgtgcgc accgccgtca ccgaccacca ccccgacgcc agggacggcg gcgcctcctt
     4501 ccgcgagaag cgcgccccga aattcaacgc ctggctggat acccaccccc aagacgccgg
     4561 caagggacac taggtcatgg cctattcgga catcctctat cgcgtgcagg acggcgtcgc
     4621 cgtcgtcacc ctcaaccgcc ccgaccggct gaacgcctgg cgcgcggaga tggagcgcga
     4681 cgtccgcgcc gcgatgcgcg cggccgccga cgacgacacg gtgcgcgtga tcgtgctcac
     4741 cggcgcagaa gccgcggccc gcgccggcgc cgacatgggc ctcctgcaga ccacggtcga
     4801 cgccggtcag gccgggtcga ccccggccgc cgctgcggcc cccgccccgt tcgacgacgc
     4861 cgcgcgcgac gacttcaagc ggcagtattc cttcttcccc gccgtcccca agccgatcat
     4921 cgcggcgatc aacggcgcct gcgcgggcct gggaatggtc atggcccttt acgccgacat
     4981 ccggttcgcc gccgacgccg cggtcttcac caccgccttt tc
//
LOCUS       DATAJL010000641         2526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94994,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000641 DATAJL010000000
VERSION     DATAJL010000641.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94994"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VHN39_12320"
     CDS             complement(<1..516)
                     /locus_tag="VHN39_12320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEX2817178.1"
                     /translation="MTAREALALWLEHLAHERRSSPRTLEAYGFAASRYIGFLEQHRG
                     EAISLATLGGVSAGEVRAWLAHLRQGERPLSPRSLSQALSAIRTFHSFLDRRLNAPNP
                     AIALVRGPKVRPGAPRPVSEDQARGMIAEPGLDPDREDWEAARDEAVLTLLYGCGLRI
                     SEALSLKRSDAP"
     gene            complement(513..1211)
                     /locus_tag="VHN39_12325"
     CDS             complement(513..1211)
                     /locus_tag="VHN39_12325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 family protein"
                     /protein_id="HEX2817179.1"
                     /translation="MDGSQGGIEEARIEPPRIEPGAVRRFLSDNPEFITGDDGLLDEL
                     GLKVAAGNVVEFAPAAMARIHAAHQHEATQRQHIEETARANFSAQAQTHGAVVDLLDA
                     RNHSDLARRVDELAQQRFGLATGVIAIETEGHPPAGWKMLVESQVDMILGGPQRLARM
                     GFAPTALGLFGERAEEIKSMAMVRMAIWDPSRQGLLAFGSADPESFTEDMGAELVAFL
                     ARVVERTAERWPIL"
     gene            complement(1270..1923)
                     /gene="fsa"
                     /locus_tag="VHN39_12330"
     CDS             complement(1270..1923)
                     /gene="fsa"
                     /locus_tag="VHN39_12330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEX2817180.1"
                     /translation="MQLFLDTTDVAVLKDLAMTGLVDGVTTNPTLIAKSGRPMLQVIA
                     EICAAVEGPVSAEVAAMDTAGMLDEGRKLASIAPNVVVKLPLTRDGLIACREFAHEGI
                     ATNVTLCFSAAQALLAAKAGASYISPFIGRLDDHGADGMDLIVEIRAIYDNYDFDTEI
                     LAASIRSAGHVTTAALAGADCATIPPDVFNALFKHPLTERGLDQFMSDWAKTGQSIL"
     gene            2020..>2526
                     /locus_tag="VHN39_12335"
     CDS             2020..>2526
                     /locus_tag="VHN39_12335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEX2817181.1"
                     /translation="MSRIASILLPMPLPEAFDYAEPEGMVLELGDQVAAPLGPRLLRG
                     VVVGLRDAVGGNRPLKPLEAILEEPRLPPGTVEFIQWAARYSVDWPGQPLAIALRGAR
                     APKPRPVRVTELTGVQPARPTAARTKVLEAAAVAMSPPDLARAAGVGAGVVKGLIDEG
                     VLSVRLVEA"
BASE COUNT          357 a          834 c          946 g          389 t
ORIGIN      
        1 gggcgcgtcg gagcgcttca gcgacagcgc ctcggagatc cgcaggccgc agccgtagag
       61 cagggtcagc accgcctcgt cgcgggccgc ctcccagtcc tcgcggtcgg gatcaaggcc
      121 cggctcggcg atcatgccgc gcgcctgatc ctcgctcacc ggccggggcg cgccgggccg
      181 gaccttgggg ccgcgcacca gggcgatggc ggggttgggg gcgttcaggc ggcggtcgag
      241 gaagctgtgg aaggtgcgga tcgccgacag cgcctggctg agcgagcgcg gcgacagggg
      301 tcgctcgccc tggcgcagat gagccagcca ggcgcggact tctccggcgc tgaccccgcc
      361 gagcgtggcg agcgagatcg cctcgccgcg gtgctgttct agaaagccga tgtagcgcga
      421 ggcggcgaag ccgtaggcct ccagcgtgcg cggcgaggac cggcgctcat gggccaggtg
      481 ttccagccag agcgccagag cctcgcgcgc cgtcacagta tcggccagcg ctcggcggtg
      541 cgttcgacca cgcgggcgag gaaggccacg agctcggcgc ccatgtcctc ggtgaagctc
      601 tcgggatcgg cggaaccgaa ggccagcaag ccttgacgag aggggtccca gatcgccatg
      661 cggaccatgg ccatggactt gatctcctcg gcccgttcgc cgaacaggcc cagcgccgtg
      721 ggcgcgaacc ccatgcgggc cagccgctgc ggcccgccca ggatcatgtc cacctggctc
      781 tccaccagca tcttccagcc ggccggggga tggccttcgg tttcaatcgc gatcacgccc
      841 gtggccaggc caaaacgctg ttgcgccagc tcgtcgacgc ggcgggcgag gtcggagtgg
      901 ttgcgggcgt ccagcaggtc cacgaccgcg ccgtgggtct gggcctgggc ggagaagttg
      961 gcgcgcgccg tctcctcgat atgctggcgc tgggtcgcct catgctggtg ggcggcgtgg
     1021 atgcgggcca tggcggccgg cgcgaactcc accacattgc cggcggcgac cttcaggcca
     1081 agctcgtcca gcaggccgtc gtcgccggtg atgaattccg gattgtccga cagaaagcgc
     1141 cgcacagcgc caggctcgat gcgggggggc tcgatgcggg cttcttcaat tccgccctgc
     1201 gacccgtcca tggaggctcc aagttcttgc ttggcgctct tccggacggc ttcgcctgga
     1261 aacgcgctgc tacaggatcg actgacccgt cttggcccag tcgctcatga actgatcaag
     1321 accccgttcg gttaacgggt gcttgaagag ggcgttgaac acgtccggcg gaatggtcgc
     1381 gcagtcggcg ccggcgagcg ccgcggtggt cacgtggccc gcgctgcgga tcgaggcggc
     1441 caggatctcg gtgtcgaagt cgtagttgtc gtagatcgcg cggatctcga cgatcaggtc
     1501 catgccgtcg gcgccatggt cgtccagccg gccgatgaag gggctgatgt agctcgcgcc
     1561 cgccttggcc gccagcaggg cttgggcggc ggagaagcac agggtcacgt tggtggcgat
     1621 gccttcgtgg gcgaattcgc ggcaggcgat cagcccgtcc cgggtcagcg gcagcttcac
     1681 gacgacgttc ggcgcgatgg aggcaagctt gcggccctcg tccagcatgc cggcggtgtc
     1741 catggcggcg acctcggcgc tcaccggccc ctcgaccgcg gcgcaaatct cggcgatgac
     1801 ctgcagcatg ggacggccgg acttggcgat cagggtgggg ttggtggtga cgccgtccac
     1861 caggccggtc atggccaggt ccttgaggac ggccacgtcg gtggtgtcga ggaagagctg
     1921 catcgggaaa accttgggtt tgcggacgat gcttgtagcg cccgccgcga tgcgcgcaaa
     1981 accccttacc cgcgcgcgaa gcgcgaaaag aagtttggga tgagccgtat cgcctccatc
     2041 cttttgccga tgcccctgcc ggaggcgttc gattacgccg agccggaggg catggtgctg
     2101 gagctgggcg accaggtggc ggcgcccttg ggtccgcgcc tgctgcgcgg cgtggtggtg
     2161 ggtctgcgcg acgccgtcgg tggcaaccgg ccgctgaagc ccctggaggc cattctcgaa
     2221 gagccgcgct tgccacccgg caccgtggag ttcatccagt gggcggcgcg ttattcggtg
     2281 gactggccgg gccagccact ggccatcgcg ctgcgtggcg cgagggcgcc gaagccgcgc
     2341 cccgtccgcg tcaccgagct taccggcgtc cagcccgcgc gcccgacagc ggcgcggacc
     2401 aaggtgctgg aggccgccgc ggtggccatg agcccgcccg acctggcgcg cgccgcgggc
     2461 gtgggcgcgg gcgtcgtgaa gggcctgatc gacgagggcg tgctctcggt gcggctggtc
     2521 gaggcg
//
LOCUS       DATAJL010000642         2223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_94997,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000642 DATAJL010000000
VERSION     DATAJL010000642.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94997"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VHN39_12340"
     CDS             <1..210
                     /locus_tag="VHN39_12340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817182.1"
                     /translation="ASVGINDVGLLTAPDGRTFAVAVMVRQTRQGPSARHRLMQSVAR
                     ATEAYWRDSGPGEIRQQQAASDAAI"
     gene            complement(273..653)
                     /locus_tag="VHN39_12345"
     CDS             complement(273..653)
                     /locus_tag="VHN39_12345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817183.1"
                     /translation="MNRTFFILAAALAASSLNARAAPPAANVATAFGNTVVSIDPDGR
                     SRKIWLQPDGSWTGLSRRGLALAGKWTVKGEKICMSQSKPRLFGDLCQVFPSDPKTGI
                     DTKDPTGTPIHLKLVKGHIEKYPA"
     gene            652..1029
                     /locus_tag="VHN39_12350"
     CDS             652..1029
                     /locus_tag="VHN39_12350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817184.1"
                     /translation="MTFLNARREKKPHPLTQRAHAAASPSHPGFIDDPINAPLPAAGS
                     PPEMPMYLFYPCRDDGLPTSLEAFELADDAAARDQACSVLAGHASATQVTVWCDGEAL
                     ETVCRGPPHPGGPPQSLLLDDLG"
     gene            complement(1026..1235)
                     /locus_tag="VHN39_12355"
     CDS             complement(1026..1235)
                     /locus_tag="VHN39_12355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817185.1"
                     /translation="MPRIIISCPTTGADVPTGHRTQDFELAAIVEPRSFRCPVCHQVH
                     AWRGEDARVEHALTPAEAGAAALAS"
     gene            complement(1286..>2223)
                     /locus_tag="VHN39_12360"
     CDS             complement(1286..>2223)
                     /locus_tag="VHN39_12360"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEX2817186.1"
                     /translation="TRTPGGSSGGSAAALAAGMIPLEFGSDIGGSIRMPAHFCGVYGH
                     KPSYGLVPGRGHIPPYVPEGAGVVLAVVGPLARTAADLGLALDVLAAPDEGEATGYRL
                     ALPPARHTRLGDYRVLLLTDHPMSILDDEIRAGLTGLADRLEGLGAKVARASELVPDL
                     EQIQAAYMGILMPAMSRNQPGAQTISAHEWMALLDTQAQICRRWAELFKAFDVVLTPV
                     HAAPAFPHDDEPDMAKRTLTINGQQTPYFAAGAWAGLATLGNLPSTVIPVGQTRGGLP
                     FGAQVIGPYLEDRTTIGFAGLLEREFGGFRRPPGF"
BASE COUNT          343 a          766 c          791 g          323 t
ORIGIN      
        1 gcctcggtgg gcatcaatga cgtgggcctc ttgaccgccc ccgacggccg caccttcgcc
       61 gtcgccgtga tggtccgcca gacccgccag gggccctcgg cccgccatcg cctgatgcag
      121 agcgtcgccc gcgcaaccga agcctactgg cgtgacagcg gcccgggcga aatccgccag
      181 cagcaggcgg ccagcgacgc cgctatctag gccgggttct agcgccgctc gttggtccgc
      241 agcggccatc cgtcgcctgc ggccgtggcc gactaggccg gatatttctc gatgtgcccc
      301 ttcaccagct tcaggtggat gggtgtcccg gtcgggtcct tggtgtcgat gccggtcttg
      361 ggatcgctcg ggaagacctg gcagaggtcg ccgaacagac gcggctttga ctggctcatg
      421 cagatcttct cgcccttcac cgtccacttg ccggcgagcg cgaggccgcg gcggctcagg
      481 cccgtccagg agccatccgg ctgcagccag atcttccgcg agcggccgtc cggatcgatg
      541 gaaacgaccg tgttgccgaa ggccgtggcg acgttggcgg cagggggcgc ggcccgggcg
      601 ttgagcgagg aggccgccag ggcggcggcg aggatgaaga aggtccggtt catgacattc
      661 ctcaacgcgc gacgggaaaa aaagcctcac cccctgaccc agagggcgca tgccgcggcc
      721 tcgccaagtc atcccgggtt catcgacgac ccgataaacg ccccgcttcc cgccgccgga
      781 tcaccgcctg aaatgccgat gtatctcttt tacccgtgcc gcgacgacgg cctgccgacc
      841 agcctcgagg ctttcgaact ggcggatgac gcggcggcgc gcgaccaagc ctgctcggtg
      901 ctggccggcc atgcgagcgc cacgcaggtg acggtctggt gtgacggcga ggcgctcgaa
      961 acggtctgtc ggggcccgcc ccatccgggc ggccctccgc agagcctcct gctcgacgac
     1021 ctgggctagc tggcgagcgc cgcggcgccg gcctcggccg gggtcagggc gtgttcgacc
     1081 cgggcgtctt ccccgcgcca ggcgtgaacc tgatggcaga ccgggcagcg gaacgaccgt
     1141 ggctcgacga tcgcggcgag ctcgaaatcc tgggtgcggt gaccggtggg aacgtccgcg
     1201 ccggtggtcg ggcagcttat gatgatcctg ggcatgcaac cctaacggat tcaaacagat
     1261 aaggttgctt cgcggtgcga gaaccttaga agcccggggg ccggcggaaa ccgccgaact
     1321 cgcgctccag gaggccggcg aagccaatgg tcgtgcggtc ctccagatag ggcccgatca
     1381 cctgggcgcc gaagggcagt ccgccgcggg tctggccgac cggaatgacg gtggacggca
     1441 gattgccgag cgtggccagg cccgcccagg ccccggccgc gaaatagggg gtttgctggc
     1501 cgttgatcgt cagggtccgc ttggccatgt caggctcgtc gtcgtgcggg aaggcgggcg
     1561 cggcatgcac cggggtcagc accacgtcga aggccttgaa cagctccgcc caccggcggc
     1621 aaatctgcgc ctgcgtatcc agaagcgcca tccactcgtg ggccgagatg gtttgcgcgc
     1681 cgggctggtt gcgcgacatg gccggcatca ggatgcccat gtaagccgcc tggatctgtt
     1741 cgaggtcggg cacgagctcg ctggcgcgcg ccaccttggc ccccaggccc tccagccggt
     1801 cggccagccc ggtcagcccg gcgcggatct cgtcgtccag gatcgacatc ggatgatcgg
     1861 tgagaagcag cacccggtag tcccccaacc gtgtgtggcg cgccggcggc agggccaggc
     1921 gatagcctgt ggcctcgccc tcgtccgggg ccgccagcac gtcgagcgcc aggccaaggt
     1981 cggcggcggt gcgggccagg ggcccgacga cagccagcac gacgcccgcg ccctccggaa
     2041 catagggtgg gatgtgccca cgaccgggga cgaggccgta gctcggcttg tgcccataga
     2101 cgccgcagaa atgggccggc atgcggatcg agccgccgat gtcggagccg aactccagcg
     2161 gtatcatccc ggccgccagc gccgcggccg agccgcctga cgagccgccg ggcgtacggg
     2221 tca
//
LOCUS       DATAJL010000643         1501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95001,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000643 DATAJL010000000
VERSION     DATAJL010000643.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1501
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95001"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..665
                     /locus_tag="VHN39_12365"
     CDS             <1..665
                     /locus_tag="VHN39_12365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004620889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817187.1"
                     /translation="IPADKLEEVFESFRQVDSSTTRTYEGTGLGLAICRRLAQAMGGD
                     IGLESVLGEGSTVTVRLPLKRAASPAPDGWKDRRSAPRTLQDCRVLVCDANPMTQAVI
                     RASLQPQARAVEAVSSCEEVREAGAGRFDLVLADASALGAERQTRLAALRALSDAVKP
                     ALVVVMIADIGEDEAGRLLGAGASQIIKKPIAASRLADELRAGYDVREEAWTARRANP
                     AA"
     gene            739..1131
                     /locus_tag="VHN39_12370"
     CDS             739..1131
                     /locus_tag="VHN39_12370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2817188.1"
                     /translation="MRVLFVEDNEVNRRVVKEMLRAGGVDMVEAENGRVGLEMIATQN
                     FDLVLMDLRMPVMDGMTAIRHIRARTDDKAGLPVIVVTADDGLTIDADCLKAGADDVI
                     HKPISMAALFGAIGAVLAERGDDKVMIA"
     gene            1260..>1501
                     /locus_tag="VHN39_12375"
     CDS             1260..>1501
                     /locus_tag="VHN39_12375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817189.1"
                     /translation="MNSFNKSEFLDLVYGAALEPALWAPVMEQYADAIGGEKGWLSML
                     NHVDGSGGDGGMLARIDPTEMGRYVAYFADRNPLFHV"
BASE COUNT          248 a          492 c          520 g          241 t
ORIGIN      
        1 gcatccctgc cgacaagctg gaagaggttt tcgagagctt ccgtcaggtg gattcgagca
       61 ccacccgcac ctacgaaggc accgggctgg gcctggccat ctgccgccgg ctggcccagg
      121 ccatgggcgg cgacatcggc ctggaaagcg tgctgggcga aggctcgacg gtcaccgtgc
      181 gcctgccgct gaagcgcgcc gcttccccgg ctcccgacgg ctggaaggac cggcgctcgg
      241 cgccgcgcac cctgcaggat tgccgcgtgc tggtctgcga cgccaacccg atgacccagg
      301 cggtcatcag ggcctccctg cagccccagg ctcgcgccgt ggaagctgtg tcgagttgcg
      361 aggaggtccg cgaggctggc gccggccgtt tcgacctggt gttggccgac gccagcgcgc
      421 tgggcgcgga acgtcagacg aggctcgcgg ccctgcgggc gctctcggat gcggtgaaac
      481 cagctctggt ggtggtgatg atcgccgaca tcggcgagga cgaggctggc cgcctgctgg
      541 gcgcaggcgc cagccaaatc atcaagaagc ccatcgcggc ttccaggctc gccgacgaac
      601 ttcgcgccgg ctacgacgtc cgggaggaag cctggaccgc ccggcgggca aatccggccg
      661 catgatcaac gttcgttaag cactgggctt cacgatgcgg tctgattggc ggtccctgcc
      721 gccctggagc cctccgcaat gcgggtcttg ttcgtcgagg acaacgaggt caaccggcgc
      781 gtcgtcaagg agatgctgcg cgcgggcggc gtcgacatgg tcgaggccga gaatggccgc
      841 gtgggcctgg agatgatcgc cacccagaat ttcgacctgg tcctgatgga cctgcggatg
      901 ccggtcatgg acgggatgac cgcgatccgt catatccgcg cccggaccga tgacaaggcc
      961 ggcctgccgg tcatcgtggt caccgccgat gacggcctga ccatcgacgc cgattgcctc
     1021 aaggccggcg ccgacgacgt gatccacaag ccgatctcaa tggcggccct gttcggcgcg
     1081 atcggcgcgg tgctggccga gcgcggcgac gataaggtga tgatcgctta ggcgccaggg
     1141 cccggcaggc gctcaacagg ccgctcaaac tccccttaca cgcgcagatg cttgagcctg
     1201 cgccgataga cgctatcctt gcctaacctc ggtcgctcgc gcggctccgg gcgggacgga
     1261 tgaacagctt caacaagagc gaattcttgg acctggtcta tggggcggcc ttggagcctg
     1321 ccctgtgggc gccggtcatg gagcaatatg ccgacgccat cggcggcgaa aaaggctggc
     1381 tgtccatgct caaccacgtg gatggttcag gcggcgatgg cgggatgctc gcgcggatcg
     1441 atccgaccga aatggggcga tacgtggcct acttcgccga ccgcaatccg ctgttccacg
     1501 t
//
LOCUS       DATAJL010000644         1541 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_107772,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000644 DATAJL010000000
VERSION     DATAJL010000644.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107772"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..986
                     /locus_tag="VHN39_12380"
     CDS             <1..986
                     /locus_tag="VHN39_12380"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX2817190.1"
                     /translation="ADLPGYSKSPNGDETIAFDLIGDSGATNQAKLAGETSVGELLTA
                     GAQASQPAFLYHVGDVVYFYGEKQFYYGQFADVFKDYPAPIFAIPGNHDGIIHDASMV
                     SLESFQAAFCAAAPGRWDGFGGILRSTMTQPGVYFTLDAPLVSIIGLYSNCGESRGWL
                     DAQQYAFLQQELVRLKAIRDAGETRAVILAVHHFPRWFPNASSKDPMSVQLDAIFEAT
                     GLWPDAVVAGHAHLYQRIIRQTVAGRDIPYFVNGGGGYGIMALEQVGKPYLNSAAPPP
                     HATLFEEGYLRATITKSAGKTTLAFAYNGIKHQTANPIDTCTIDLGTNKMI"
     gene            1030..>1541
                     /locus_tag="VHN39_12385"
     CDS             1030..>1541
                     /locus_tag="VHN39_12385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein adenylyltransferase SelO family protein"
                     /protein_id="HEX2817191.1"
                     /translation="MPVSPAYRPDPRFSELGAEFADPVAAEAFPKTILRFRNDRAAAT
                     VGLDTLTDAEWIAHFGRFEPLPGNINPPLAQRYHGHQFRVYNPELGDGRGFTFAQLRE
                     AGTDRLLDLGTKGWGRTPWSRTADGRLTLKGGVREVLATAMLEALGVPTSRSFSLIET
                     GEDLDRSDEP"
BASE COUNT          256 a          537 c          503 g          245 t
ORIGIN      
        1 gggccgacct ccccggttac tcgaagtcgc cgaacggtga cgagaccatc gccttcgacc
       61 tgatcggcga cagcggcgcc accaaccagg ccaagctggc gggcgagacc agcgtcggcg
      121 agctgttgac cgcaggcgcc caggccagtc agccggcctt cctctatcac gtgggcgacg
      181 tggtctattt ctacggggag aagcagttct actacgggca gttcgccgac gttttcaaag
      241 actacccggc gccgatcttc gcgattcccg gcaatcacga cggcatcatc cacgacgcct
      301 cgatggtttc gctggagagc ttccaggccg cgttctgcgc ggcggcgccc gggcgctggg
      361 acgggttcgg cggcatcctg cgctcgacca tgacccagcc cggggtatat ttcaccctgg
      421 acgcgccact ggtctcgatc atcggcctct acagcaattg tggggaatcg cggggctggc
      481 tcgacgcgca gcaatacgcc ttcctgcagc aggagctcgt ccggctgaag gcgatcaggg
      541 acgccggcga gacccgcgcg gtgatcctgg cggtccacca cttcccccgc tggttcccga
      601 acgcctcgtc gaaggatccg atgagcgtgc agctggacgc gatcttcgag gccacgggct
      661 tgtggcccga tgcggtggtg gccggccacg cacacctcta ccagcggatt atccgtcaga
      721 ccgtcgccgg ccgcgatatc ccctatttcg tcaatggcgg cggcggctac ggcatcatgg
      781 ccctggagca ggtgggcaag ccctatctga acagtgcagc gccgccgccg cacgccaccc
      841 tgttcgagga aggctacctg cgcgccacga tcaccaagag cgccgggaag acgacgctcg
      901 ccttcgccta caacgggatc aagcaccaga ccgccaaccc gatcgacacc tgcaccatcg
      961 accttgggac aaacaagatg atctaggccg aggttgccgg cgggccgtcg atggggccat
     1021 gtcgcggcga tgccggtctc gcccgcctat cgccccgatc cgcggttttc ggaactgggg
     1081 gccgagttcg ccgacccggt ggcggccgag gcgtttccca agacgatcct caggttccgc
     1141 aatgaccggg cggccgcgac ggtgggcctg gacaccctga ccgacgccga atggatcgct
     1201 catttcggcc gtttcgagcc cctgcccggg aacatcaatc cgcccctggc gcagcgctat
     1261 cacggccacc agttccgggt ttacaacccc gagctcggcg acggccgggg cttcaccttc
     1321 gcccagctgc gcgaagccgg cacggaccga ctgctggatc tcgggaccaa gggctggggc
     1381 cgcacgccct ggtcacgcac cgccgacggc cggctgacgc tgaagggcgg ggtgcgcgag
     1441 gtgttggcga ccgccatgct ggaggcgctg ggggttccga cctcgcgctc gttttcgctg
     1501 atcgagaccg gcgaggacct ggaccgcagc gacgagccca g
//
LOCUS       DATAJL010000645         3046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_11298,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000645 DATAJL010000000
VERSION     DATAJL010000645.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11298"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VHN39_12390"
     CDS             complement(<1..335)
                     /locus_tag="VHN39_12390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817192.1"
                     /translation="MKSMPRILPLVGIAVGGVLAINALAGARNLPDMIAGAKAFAEEA
                     AAPIKPKAAKPAAKKASDSKAGDAKPADPAAPAAPAVPGGATAANAAGQNAAATAGLP
                     PPTIQPKGV"
     gene            complement(332..895)
                     /locus_tag="VHN39_12395"
     CDS             complement(332..895)
                     /locus_tag="VHN39_12395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6468 domain-containing protein"
                     /protein_id="HEX2817193.1"
                     /translation="MSIIGLAMNLLLAGLLMAALGMGWRLNRRLKALRDSHEGFAVAV
                     AELNTAAARAEQGLADLRSATDEAVDILGDRIEKGRTLAARLDRLIEHAAVPQRAQPA
                     ASLADDPVAERRLGALLAAAREARPERVMPPLRPEALRRPEALGRADLLARAPLERHA
                     PRARRSVEDDLFDDEPLTLNDVRGAAR"
     gene            complement(892..1977)
                     /gene="fliM"
                     /locus_tag="VHN39_12400"
     CDS             complement(892..1977)
                     /gene="fliM"
                     /locus_tag="VHN39_12400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEX2817194.1"
                     /translation="MADETEVPTEETPGAASAAAGEDTNTWADDADGQSERILNQDEI
                     DSLLGFDLSEEEGGERTGIRAIINSALVSYERLPMLEIVFDRLVRLMTTSLRNFTSDN
                     VEVSLDNISSIRFGDYLNSILLPAILSVFRAEELNNYGLLTVDSNLIYSIVDVLLGGR
                     RGTAAMRIEGRPYTTIERVLVQRMVEVVLADAREAFEPLTPVTFTLDRLETNPRFAAI
                     ARPANAAILVKLRIDMEDRGGRIELLLPYATLEPIRKMLLQQFMGEKFGRDNIWEGHL
                     ATELWTTNMEVRAVLDEQQLGLKQVLDLKVGDTLMLNATPDSLIELRAGVIPLTRGRM
                     GRRNAHIAVRVEAPLTPNARQAVQRST"
     gene            complement(2013..2609)
                     /locus_tag="VHN39_12405"
     CDS             complement(2013..2609)
                     /locus_tag="VHN39_12405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
                     /protein_id="HEX2817195.1"
                     /translation="MAEDKVQEAPEGEASEGEEGEGVKPKKKLSMKMMLIAGAAALVV
                     VGGGGTAGFIFLKPKPEAAGKAGAKKPADKKGKKDEKGKKDDKSAGQVREGPDGVLFY
                     TMPDVVVNMQTADGRPTFLKLKLTLELPDQATVDALEPNMPRLQDMFQTFLRELRPED
                     LSGSQGSFQLRMEILRRVNLVIAPSKANAVLIEEMLIN"
     gene            2833..>3046
                     /locus_tag="VHN39_12410"
     CDS             2833..>3046
                     /locus_tag="VHN39_12410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body protein"
                     /protein_id="HEX2817196.1"
                     /translation="MDNTLYVGLSSQMVLKREMDIVANNIANADTIGFKFESLITKVT
                     PGAPAFTAGGPRPVKFVSADGVARNFS"
BASE COUNT          462 a          959 c         1075 g          550 t
ORIGIN      
        1 cagacccctt tgggctgaat ggtgggcggc ggcagcccgg cggtggccgc ggcattctgg
       61 ccggcggcgt tcgctgcggt cgcgccgccg ggaacggcgg gcgccgcggg cgcggccgga
      121 tcggcgggct tggcgtcgcc agccttggag tcggacgcct tcttggcggc gggcttggcc
      181 gccttgggct tgatcggggc ggcggcttct tcagcgaagg ccttcgcgcc ggcgatcatg
      241 tcgggcaggt ttcgggcgcc ggccagggcg ttgatcgcca ggacgccgcc cacggcgatg
      301 cccaccaatg gcaggatgcg aggcatggat ttcaacgggc ggctccacgg acgtcgttca
      361 gggtcagggg ttcgtcgtcg aagaggtcgt cttcgacgct ccgccgcgcg cgcggggcgt
      421 gacgttcaag gggcgcgcgc gccagcaggt ccgcacggcc aagagcctcg ggccgccgaa
      481 gggcttcggg acgcaggggc ggcatgacgc gttcgggacg ggcttcgcgg gcggcggcca
      541 aaagggcgcc caggcggcgc tcggcgacgg ggtcgtccgc cagggatgcg gcgggctggg
      601 cgcgctgcgg caccgcggcg tgctcgatca gccggtccag ccgggcggcc agggtgcggc
      661 ccttctcgat gcggtcgccc aggatgtcga cagcctcgtc ggtggccgag cgcaggtcgg
      721 ccagtccctg ttcggcgcgg gccgcggcgg tgttcagctc ggccacggcg acggcgaaac
      781 cttcatggct atcgcgcagc gccttcagcc gacggttcag ccgccagccc atgcccagcg
      841 cggccatcag aagccccgcc aacagcaggt tcatggccag gccgatgatg ctcatgtgga
      901 cctctgaacg gcttgacggg cattgggcgt tagaggcgcc tccacgcgca cggcgatgtg
      961 ggcgttgcgg cggcccatgc ggccacgggt gagcgggatg acgccggcgc gaagctcgat
     1021 caggctgtcc ggcgtggcgt tcagcatcag ggtgtcgccg accttgaggt cgaggacctg
     1081 cttgaggccc agctgctgtt cgtcgaggac ggcgcggacc tccatgttgg tggtccacag
     1141 ctcggtggcc aggtggcctt cccagatatt gtcgcggccg aacttctcgc ccatgaactg
     1201 ctgcaacagc atcttgcgga tgggttcgag cgtggcgtag ggcagcagga gctcgatgcg
     1261 cccgccgcgg tcttccatgt cgatgcgcag cttcaccagg atggcggcgt tggcgggtcg
     1321 cgcgatggcc gcgaagcgcg ggttggtctc caggcggtcg agggtgaagg tcaccggcgt
     1381 cagcggctcg aaggcctcac gggcgtcggc cagcacgacc tcgaccatcc gctgcaccag
     1441 cacacgctcg atggtggtgt agggccggcc ttcgatgcgc atggccgcgg tgccccggcg
     1501 gccgcccagc agcacgtcga caatcgaata gatcaggttg gagtcgaccg tcagcaggcc
     1561 gtaattgttg agctcctcgg cgcggaacac cgacaggatc gccggcagca ggatcgagtt
     1621 caggtagtcg ccgaagcgga tggacgagat gttgtcgaga ctgacttcga cattgtccga
     1681 cgtgaaattc cgcaggctgg tggtcatcaa ccgcaccagg cggtcgaaga cgatctcgag
     1741 catcggcagg cgttcgtagg agaccagcgc ggagttgatg atcgcgcgga tgccggtgcg
     1801 ctcgccgccc tcttcctcgg agagatcgaa gcccaggagg ctgtcgatct cgtcctgatt
     1861 gaggatgcgt tcggactggc cgtcggcgtc gtcggcccag gtattggtgt cctcgccggc
     1921 cgcagcggaa gccgcgccgg gggtctcttc agtgggaact tcggtttcgt cggccatgcg
     1981 caatcgcgat cgcaggcgcc tcgggtgagg cgctagttga tcagcatctc ctcgatcagg
     2041 acggcgttgg ccttggacgg ggcgatcacc agattgacgc ggcgcaggat ctccatacgc
     2101 agctgaaagg agccctggct gccggaaagg tcctcggggc gcagttcgcg caggaaggtc
     2161 tggaacatgt cctgcagtct cggcatgttc ggctccagcg cgtcgaccgt cgcctggtca
     2221 ggcagctcca gggtcagttt cagcttcagg aaggtcggcc ggccgtcggc ggtttgcatg
     2281 ttcacgacga cgtcgggcat ggtgtagaaa aggacgccat cgggcccttc gcggacctgg
     2341 ccagcggact tgtcgtcctt cttgcccttc tcgtccttct tgcccttctt gtcggccggc
     2401 ttcttggcgc cggccttgcc ggcggcttcc ggtttgggct tgaggaagat gaaacccgca
     2461 gttccgccac cgccgaccac cacaagggcg gccgcgccag cgatcagcat catcttcatc
     2521 gagagcttct tcttgggctt tacgccctcg ccctcttcgc cctcagaggc ttccccctcg
     2581 ggcgcctcct ggactttgtc ctcggccacg cgcgcgttcc ttagaaatct gcacgcttac
     2641 cgatgaggca tgttggttaa cgcgcggttt ttaacggtcg ttaatgagtg acaagcctgc
     2701 ccggcatttt ccgccgctgg gcgcccgtta actttattgt tcgttgaaat ctaaaggctt
     2761 ttcagttggc ccgaagcttg cagccctgga cggcgaaagt gtcgcgtctc cagggccagc
     2821 aagaaaaatc aaatggacaa cacgctctac gtcggactgt cgagccagat ggtgctgaag
     2881 cgcgagatgg atatcgtcgc gaacaacatc gccaacgccg acaccattgg gttcaagttc
     2941 gaatccctga tcaccaaggt aacgcccggc gcgccggcgt tcaccgcggg cggcccgcgg
     3001 ccggtgaagt tcgtgtccgc cgacggcgtg gcgcgcaact tcagcc
//
LOCUS       DATAJL010000646         2612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95008,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000646 DATAJL010000000
VERSION     DATAJL010000646.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95008"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            376..2472
                     /locus_tag="VHN39_12415"
     CDS             376..2472
                     /locus_tag="VHN39_12415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HEX2817197.1"
                     /translation="MSARIGVLGAAVSALLVYGCSTGPAANALTSANAASATEPMASA
                     MPATVDNFMLVDAQHMEAHDLYRMADDKAVVLVSTGVGCPIARSMVPALKALRDKYAA
                     QGVEMFLVDSNLQDSRDAIAAEAKEYGIDIPILMDSNQLVGESLGVTRTAEVFVITPK
                     TWKVAYHGPISDAADYGVQKAASKEFANDALAAVVAGKPAPAATQASKGCLVDFPNRG
                     KASATKISYVKDVAPILEAKCVACHEEGGIGPFAMTNYAMVKGFSPMIREVIRTDRMP
                     PYNADPHIGKFSDDKNLSPAEVKTLVHWVEAGSPRGEGVDPLGAKKHVAPEWPLGKPD
                     LVLNVPAYKIPASGVVDYQHPYAVNPETEGKWLRASTIKVESRQGVHHILTGYMSAVP
                     KPGEQAFENKWGVSVGGYAVGAESEISPKNVGAYLPPGGAIGFQTHYTPFGKEVTDHS
                     QVALYFYKDNEKPEMVMHNSVIVNNSIVLPPNDGHHLETTYITVPHEMLLYSAFPHAH
                     YRGASADLWLRTPDGKEKELLSLPRYDFSWQRAYTFAEPIRVPAGSKLIAHFIYDNSK
                     RNPNNPDPSKTVVWGDQSWEEMFYTALRYRWIGETSSKMNDFDKDLDKDRMLGMLDQN
                     IDGKIQKAELKGQMGDMIAKYFDVLDKNHDGALDRDELAAMQQMMGGQHRKREATTEK
                     PAAPATGSAATPTAGK"
BASE COUNT          506 a          881 c          834 g          391 t
ORIGIN      
        1 gccccgatgc cgagcgcgtt caggtgcggc cagctcaatg tcgccttcag gcgctggcct
       61 gcgtcggcgc ggacctcggc cgcgacgggc ttgcgacgtg tgacgaaact catggttgct
      121 ccccccgggc ggtcttgggc ccaccatggc ccgtgtcgcg ggcttccgcc aagagggcga
      181 ccgtcgcccg gcgatctcgc ctccggtcgg ggcggtcgga accggcctcc ggcgttcgcc
      241 gaacatgaca aatttgaaac caaccgcctg tggattccgg cccctgaaca gtgttaagtt
      301 aggaggtcgg taggctctca gcgcttatgt acgccgcgaa agtctcgacg atccgttctg
      361 gaggaactga gaatgatgtc tgcgcgaatt ggcgtgttgg gtgcggcggt cagcgccctg
      421 ctggtctacg gctgctccac gggtccggcg gcgaatgcgc tgacctcggc caacgccgcc
      481 tcggcgaccg agccgatggc ctcggccatg ccggccacgg tcgacaactt catgctggtg
      541 gacgcccagc atatggaagc ccacgacctc taccggatgg ccgacgacaa ggccgtcgtg
      601 ctggtctcga ccggcgtcgg ctgcccgatc gcgcgctcca tggttccggc gctgaaagcg
      661 ctgcgcgaca agtacgccgc ccagggggtc gagatgttcc tggtcgattc caacctgcag
      721 gacagccgcg acgccatcgc cgccgaggcc aaggaatacg gcatcgacat cccgatcctg
      781 atggatagca atcagctggt cggcgagagc ctgggcgtca cccgcaccgc cgaagtcttc
      841 gtgatcacgc ccaagacctg gaaggtcgcc tatcacggac cgatcagcga cgccgccgac
      901 tatggcgtgc agaaagccgc gagcaaggaa ttcgccaacg acgcgctggc cgccgtcgtg
      961 gccggcaagc cggctccggc cgcgacgcag gcctccaagg gctgcctcgt cgatttcccc
     1021 aaccgcggca aggcctcggc gaccaagatc tcctacgtga aggacgtcgc cccgatcctg
     1081 gaagccaagt gcgtggcctg tcacgaggag ggcggaatcg gccccttcgc catgaccaac
     1141 tacgccatgg tcaagggctt ctcgccgatg atccgcgagg tgatccgcac cgaccgcatg
     1201 ccgccctaca acgccgatcc gcacatcggg aagttctccg acgacaagaa cctgtccccg
     1261 gccgaagtga agaccctggt ccactgggtg gaggccggct cgccgcgcgg cgaaggcgtc
     1321 gatcccctgg gcgccaagaa gcacgtggcg ccggagtggc cgctgggcaa gccggacctg
     1381 gtcctgaacg tgccagccta caagattccc gcctccggcg tggtcgacta ccaacacccc
     1441 tacgcggtca atccggagac cgaaggcaag tggctgcgag cctcgaccat caaggtcgaa
     1501 agccgccagg gcgtgcacca catcctgacc ggctacatga gcgcggttcc gaagcccggc
     1561 gagcaggcgt tcgagaacaa gtggggcgtc tcggtcggcg gctacgccgt cggcgccgag
     1621 agcgagatct cgccgaagaa cgtgggcgcc tacctgcccc cgggcggcgc catcggcttc
     1681 cagacccact acacgccgtt cggcaaggaa gtgaccgacc acagccaggt cgcgctctac
     1741 ttctacaagg acaacgagaa gcccgagatg gtgatgcaca actcggtgat cgtgaacaac
     1801 tcgatcgtcc tgccgccgaa cgacgggcac cacctggaaa cgacctacat caccgtcccg
     1861 cacgagatgc tgctctattc ggccttcccg cacgcccact atcgcggggc ctcggccgac
     1921 ctttggctgc gcacgccgga cggcaaggaa aaggagctgc taagcctgcc gcgctacgac
     1981 ttcagctggc agcgcgccta taccttcgcc gagccgatca gggtgcccgc gggctccaag
     2041 ctgatcgcgc acttcatcta cgacaactcc aagcgcaacc cgaacaaccc cgatccgtcg
     2101 aagaccgtgg tctggggcga ccagtcctgg gaggagatgt tctacaccgc gctccgctac
     2161 cgttggatcg gcgagacctc ctcgaagatg aacgacttcg acaaggacct cgataaggac
     2221 cgcatgctgg gcatgctgga ccagaacatc gacgggaaga tccagaaggc cgaactcaag
     2281 ggccagatgg gggacatgat cgcgaagtac ttcgacgtcc tcgacaagaa ccacgacggc
     2341 gcgctcgaca gggatgaact cgccgccatg cagcagatga tgggtggcca gcaccgcaag
     2401 cgcgaagcca cgaccgagaa gccggcggct ccggccaccg gctcggccgc gacgcccacg
     2461 gccggcaagt aagtcaccgg ccgactgaga gttgaggaag gcccggtgta acagccgggc
     2521 ctttttcatt ggggatcatc cctcctcctt aggggagggt ggacgaggcg aagcctcgga
     2581 cgggtggggg tctgtgggca aggactcgaa cc
//
LOCUS       DATAJL010000647         2183 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_61278,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000647 DATAJL010000000
VERSION     DATAJL010000647.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61278"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VHN39_12420"
     CDS             complement(<1..210)
                     /locus_tag="VHN39_12420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEX2817198.1"
                     /translation="MATEAAARPALEAVILAAGSGSRFGGGKLTALWRGGVFLDGALA
                     AAFEAPVRSVSVVTGADPKVGSAAQG"
     gene            240..1280
                     /gene="moaA"
                     /locus_tag="VHN39_12425"
     CDS             240..1280
                     /gene="moaA"
                     /locus_tag="VHN39_12425"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEX2817199.1"
                     /translation="MTPYDAPSPQGQRSPSAALTDSFGRTVTYLRVSVTDRCDLRCVY
                     CMSEHMVFLPKAQVLTLEELDRIASAFVGMGTRKLRITGGEPLVRKGVMGLFQNLSRH
                     LKSGALDEITLTTNGTQLAQYAEQLAEAGVKRINVSLDTLKPDLFRTLTRGGDLAKVI
                     GGIDAAQAAGLHVKINAVALKDDNAAEIPDIIRWAHGRGLDMTLIETMPMGEVEADRT
                     DQYLSLTGLRAELESFWTLTDLAVTTGGPARYVDVAETGGRLGFITPLSHNFCEACNR
                     VRLTCTGTLHTCLGQEDAADLRAVIRGGADDAGLVEAIRNAVDAKPKGHDFHIARSLA
                     PSVARHMSTTGG"
     gene            1285..1524
                     /locus_tag="VHN39_12430"
     CDS             1285..1524
                     /locus_tag="VHN39_12430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX2817200.1"
                     /translation="MARVLLFGRLSDVAGWRDRQIDSPFLSALRAKLSGEDADLGEAL
                     AGPGVQVALDQVIVRGDAPLNSGTEVAFLPPMSGG"
     gene            1521..1979
                     /locus_tag="VHN39_12435"
     CDS             1521..1979
                     /locus_tag="VHN39_12435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010917906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEX2817201.1"
                     /translation="MSVRLTFDPFDPGALLTEFCRDRSETGAVATFTGIARAEAGATV
                     ALELEAYPGFTEAQIATIAGQAKVRFGLDDFAILHRVGKIAPGEAVVFVATAARHRRH
                     AFEACDFLMDYLKSKAPFWKKEHGPDGARWVEPRAEDHADLKRWEKETSR"
     gene            1976..>2183
                     /locus_tag="VHN39_12440"
     CDS             1976..>2183
                     /locus_tag="VHN39_12440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEX2817202.1"
                     /translation="MNALTPGGRIDEKQAIKPVRIAVLTISDTRDEESDTSGHVLAER
                     VKAAGHELVDKAICKDSVVEIREKI"
BASE COUNT          348 a          759 c          764 g          312 t
ORIGIN      
        1 gccctgcgcg gccgatccca ccttcggatc ggctccggtc accacgctca ccgaccggac
       61 cggggcttcg aaggcggcgg cgagggcgcc gtcgaggaag acgccgccgc gccagagggc
      121 ggtgagcttg ccgccgccga agcggctgcc cgatccggcg gccaggatca ccgcctccag
      181 agccggccgt gcggctgcct ctgtcgccaa ggccatatcc tctctatgtt tagcgccaca
      241 tgacgcccta cgacgcccct tcgccgcaag gccaacgctc accttccgca gcgctcaccg
      301 acagcttcgg ccggacggtg acctatttgc gcgtctcggt caccgaccgc tgcgacctgc
      361 gctgcgtcta ttgcatgagc gagcacatgg tcttcctgcc gaaggcgcag gtgctgaccc
      421 tggaggagct cgaccgcatc gccagcgcct tcgtggggat gggcacgcgg aagctgcgca
      481 tcaccggcgg cgagcccctg gtgcgcaagg gcgtgatggg cctgttccag aacctgagcc
      541 ggcacctcaa gtccggcgcg ctggacgaga tcaccctgac caccaacggc acccagctcg
      601 cccaatatgc ggagcaactg gccgaggccg gggtgaagcg gatcaatgtg tcgctggata
      661 cgctgaagcc ggacctgttc cgcacgctga cgcggggcgg ggacctcgcc aaggtgatcg
      721 gcggcatcga tgcggcgcag gcggcgggct tgcacgtcaa gatcaacgct gtggcgctga
      781 aggacgacaa cgccgccgaa atcccggaca tcatccgctg ggcgcacggg cgcgggctgg
      841 acatgaccct gatcgagacc atgcccatgg gcgaggtcga ggcggatcgg acggaccagt
      901 atctgtcgct caccggcctc agggctgagc tggagagctt ctggacgctc accgacctgg
      961 ccgtcacgac cggcgggccg gcgcgctatg tggacgtggc cgagaccggc gggcggctgg
     1021 gcttcatcac cccgctcagc cacaatttct gcgaggcctg caaccgggtg cggctgacct
     1081 gcacgggaac gctgcacacc tgcctgggcc aggaggacgc cgccgacctg cgcgcggtga
     1141 tccgcggcgg ggcggacgac gcgggcctcg tcgaggccat ccgcaacgcc gtcgacgcca
     1201 agcccaaggg ccacgatttt cacattgcgc ggtcgcttgc gccgtcggtg gcgcggcaca
     1261 tgtcgacgac cgggggctga gctggtggct cgcgtgctgc tgttcggccg gctcagcgac
     1321 gtggccggct ggcgcgatcg gcagatcgac agtcccttcc tctccgccct gcgcgccaag
     1381 ctttccggcg aggacgcgga tctgggcgag gccctggccg ggcccggcgt ccaggtggcg
     1441 ctggaccagg tgatcgtgcg cggcgacgcc cccctgaact caggcaccga ggtcgccttc
     1501 ctgccgccga tgagcggcgg atgagcgtcc ggctcacctt cgatccgttc gatccgggcg
     1561 ctctgctcac cgagttctgc cgggaccggt cggagactgg cgcggtcgcc accttcaccg
     1621 gcatcgcccg cgccgaggcc ggcgccacgg tggccctgga gctggaggcc tatcccggct
     1681 tcaccgaggc gcagatcgcc acgatcgccg gccaggcgaa agtccgcttc ggcctcgacg
     1741 acttcgctat cttgcaccgc gtggggaaga tcgcgccggg agaggcggtc gtgttcgtgg
     1801 cgacggcggc ccggcatcgc cgccacgcgt tcgaggcctg cgacttcctg atggactatt
     1861 tgaagtccaa ggcgccgttc tggaagaagg agcacggccc ggacggcgcc cgctgggtcg
     1921 agccgcgcgc cgaagaccac gccgacctca agcggtggga gaaggagacc tccagatgaa
     1981 cgcgctgacc cccggcggcc ggatcgacga gaaacaggcc atcaagcccg tgcggatcgc
     2041 ggtgctgacc atctccgaca cccgcgacga ggagagcgac acctccggcc acgtgctggc
     2101 cgagcgggtg aaggcggcgg ggcacgagct ggtcgacaag gcgatctgca aggattccgt
     2161 cgtggaaatc cgcgagaaga tcc
//
LOCUS       DATAJL010000648         2226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_61361,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000648 DATAJL010000000
VERSION     DATAJL010000648.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2226
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61361"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            11..118
                     /locus_tag="VHN39_12445"
     CDS             11..118
                     /locus_tag="VHN39_12445"
                     /inference="COORDINATES: protein motif:HMM:NF039287.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817203.1"
                     /translation="MPPGRAVKAPDVLFKKVEDAQVAEWRERFGGPEAS"
     gene            complement(111..836)
                     /locus_tag="VHN39_12450"
     CDS             complement(111..836)
                     /locus_tag="VHN39_12450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521767.1"
                     /note="Members of this highly hydrophobic protein
                     family,regularly are found preceded by the yybP-ykoY
                     manganese riboswitch (see RF00080). A metal cation
                     transport function is proposed; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YjbE family putative metal transport protein"
                     /protein_id="HEX2817204.1"
                     /translation="MPFIQFLSAGAVAAFFQVVFIDLALAGDNAVAVGMAAAGLPAHQ
                     RKKAIALGLGAAVVMLITFALVTTQLLRVVGLLLAGGFLLLWVCWKMWRDLRAQGREN
                     SAEGEEALGIAGAGAKNPPKSKTLRAALVQILMADLAMSLDNVLAVAGAARQHPWVLI
                     GGLLLSITLTGLAASWIAKLLHRFRWIGYVGLAIVFFVSGHMIWDGLRSVAIDTGATR
                     VYNNAMPGPLDIKPPEVAKRKAS"
     gene            complement(880..1590)
                     /gene="rlmB"
                     /locus_tag="VHN39_12455"
     CDS             complement(880..1590)
                     /gene="rlmB"
                     /locus_tag="VHN39_12455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEX2817205.1"
                     /translation="MADDWIWGWHAVEAALANPLRGPADLILATPERIKQIEARFGRL
                     GMVQQADHQQIAQRLPQGSVHQGVAVKGAVLEPADLSDFEPKPGAVLLMLDQVTDPQN
                     VGAMLRSAAAFGAVGMVMQDRHAPRFTGALAKAAAGAVDKVPVARVVNLSRALDELTT
                     AGWRAVGLAGEAERTLEQVLDGAPTVLVMGSEGEGLRRLVADHCDELVRIPMPGGFES
                     LNVSAAAAVALYEASRPR"
     gene            1810..1895
                     /locus_tag="VHN39_12460"
     tRNA            1810..1895
                     /locus_tag="VHN39_12460"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1844..1846,aa:Tyr,seq:gta)
     gene            1951..2024
                     /locus_tag="VHN39_12465"
     tRNA            1951..2024
                     /locus_tag="VHN39_12465"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1983..1985,aa:Gly,seq:tcc)
     gene            2077..>2226
                     /locus_tag="VHN39_12470"
     CDS             2077..>2226
                     /locus_tag="VHN39_12470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX2817206.1"
                     /translation="MAKEKFQRNKPHCNIGTIGHVDHGKTTLTAAITFTLAKTGGAKS
                     MSYADI"
BASE COUNT          367 a          779 c          750 g          330 t
ORIGIN      
        1 actcgacatc ctgccgcccg gccgcgcggt gaaggccccg gacgtcctgt tcaagaaggt
       61 cgaggacgcc caggtggccg agtggcgcga acgcttcggc gggccggagg ctagctagct
      121 ttccgcttgg cgacctcggg cggcttgatg tccagcgggc cgggcatggc gttgttgtag
      181 actcgggtcg cgccggtatc gatcgcgacg ctgcgcaggc cgtcccagat catgtgtcct
      241 gagacgaaga acacgatcgc caggccgaca taaccgatcc agcggaagcg gtgcagcagc
      301 ttggcgatcc agctggcggc gaggccggtc agcgtgatcg agagcagaag gccgccgatc
      361 aggacccagg ggtgctgccg cgccgcaccg gcgaccgcca ggacgttgtc cagcgacatg
      421 gcgaggtcgg ccatcaggat ctggaccagc gcggcgcgca gggtcttgga tttgggcggg
      481 ttcttggcgc cggcgccggc gatcccgagg gcttcctcgc cctctgcgct gttctcccgg
      541 ccctgggcgc gcaggtcgcg ccacatcttc cagcagaccc agagcagcag gaagccgccg
      601 gcaagcagca gccccacgac ccgcaggagc tgggtggtga ccagcgcgaa ggtgatcagc
      661 atcaccaccg ccgcgcccaa gccgagcgcg atcgccttct tgcgctgatg cgccggcagg
      721 cccgcggcgg ccatgcccac cgccaccgcg ttgtcaccgg ccagcgccag gtcgatgaac
      781 accacctgga aaaaggccgc gaccgcgccg gcgctcagga actggataaa gggcatcggc
      841 tcttcaatgc ggcagcgccg ggtccgctgc aatatgcgct caacgcgggc gcgaagcctc
      901 gtagagcgcc acggcggcgg ccgccgagac gttcaggctc tcgaagccgc ccggcatggg
      961 gatgcggacg agctcgtcgc agtgatcggc caccagacgt cgcaggccct cgccctccga
     1021 gcccatcacc agcacggtgg gcgcgccgtc cagcacctgc tccagcgtcc gttctgcctc
     1081 gccggccagg cccacggcgc gccagccggc ggtggtgagc tcgtccagcg cccgggagag
     1141 gttcaccacc cgggccaccg ggaccttgtc gaccgcgccg gccgccgcct tggccagcgc
     1201 cccggtgaac ctcggcgcat ggcggtcctg catcaccatg ccgacggccc cgaaagccgc
     1261 ggccgagcgc agcatggcgc ccacgttctg cggatcggtg acctggtcga gcatcagcag
     1321 tacggcgccc ggtttgggct cgaagtccga gagatcggct ggctccagca ccgcgccctt
     1381 tacggccaca ccctggtgga cggagccctg cggcaggcgt tgcgcgatct gctggtgatc
     1441 agcctgctgc accatgccga gccgtccgaa ccgggcctcg atctgcttga tccgctcggg
     1501 cgtggccagg atcaggtcgg ccgggccgcg cagcggattg gcgagcgcgg cctccaccgc
     1561 gtgccagccc cagatccagt cgtcggccac cgcctccgga cgcctcgaaa agtgcccgcc
     1621 cgcgcgcttg tggcggcctc tgtgggcgtc gttgcgttcg gggttcgagg ccactataag
     1681 acgcgctcca aattggggcc ccggacgggt taccgccttt gggaccatgc gttgggccgc
     1741 tcttaggcct gccgcatccc tcggcggaag ccttttgttc aaagcttcga cacggctccg
     1801 agcgcgctgg ggggaatgtc ccgagtggca aagggggggg actgtaaatc ccctggcgta
     1861 cgccttcgta ggttcgagtc ctacttcccc caccatccgc ccgccaggcg cgacgagacg
     1921 agagggcgca ggccgcaggc ggctgcgctt gcgggtatag cacaatggta gtgcagcagc
     1981 cttccaagct gaggatgcgg gttcgattcc cgccacccgc tccaggttcg ctagtccgtc
     2041 ttcaacttcc acatgaaaca acgcccgtag gatcccatgg ccaaggaaaa attccaacgc
     2101 aataagccgc actgcaacat cggcacgatc ggtcacgttg accacggcaa gacgacgctg
     2161 acggcggcga tcaccttcac cctggcgaag accggcgggg ccaagtcgat gagctatgcg
     2221 gacatc
//
LOCUS       DATAJL010000649         3117 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95064,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000649 DATAJL010000000
VERSION     DATAJL010000649.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3117
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95064"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..776)
                     /locus_tag="VHN39_12475"
     CDS             complement(<1..776)
                     /locus_tag="VHN39_12475"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEX2817207.1"
                     /translation="MAAALAAAVGLAAAVASHAAGVIGGLLKVRLGGDAQQTRLVMDL
                     DQAASAKLISDGAADGHVILLLPTVSATGGLQGSGQGLVKAWSVDQTSSGARLQLDLA
                     PDARIKGRFLLPPADGIDHYRYVVDVVSQPGQVRMISARASATPVALKLRPQIIPPQV
                     TPVSLKKVIVIDPGHGGHDPGALGAQGYEKDVNLAAALALKERLERSPRYKVVLTRDD
                     DTYVPLDQRVRVAQQAGADLFISLHSDSGPDASVRGASVYT"
     gene            1255..>3117
                     /locus_tag="VHN39_12480"
     CDS             1255..>3117
                     /locus_tag="VHN39_12480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HEX2817208.1"
                     /translation="MSKNMLIDAAHAEETRVVVVDGTRVEEFDFESSNRKQLRGNIYL
                     AKVTRVEPSLQAAFIEYGGNRHGFLAFNEIHPDYYQIPVADREALMREEAEEEDDHHE
                     PKGRRNGANGGAAANGESGSEDDDEDHEASSEDDDDVMEEEVARRRRRLMRKYKIQEV
                     IRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKIETATDRRR
                     LKGIVQSLDVPQGMGLIVRTAGAKRTKAELKRDYDYLLRLWENIRETTLHSIAPALIY
                     EEEDLVKRAIRDLYDKDIDGVFVEGEAGFKEARDFMRMLMPSQAKKVQLYREPTPLFV
                     KHRVEDHLSQIYSPVVPLRSGGYLVINQTEALVAVDVNSGKSTRERNIEATALKTNME
                     AAEEAARQLRLRDLAGLIVIDFIDMDESKNNRSVEKKLKDCLKDDRARVQMGKISSFG
                     LMEISRQRRRSGVLEGTTHVCEHCQGTGRVRSVESSALAALRTLELEALKGGGEATLK
                     TPRAVGLYILNEKRAHLARLQQTMGLFVTVVVDDDMAHADCLIERTSMETRPDHAVVA
                     APSQAYEAMVDDGYDDEAFEDEHEDEEDEAAIEREDTDDDEPRAIAAGHGREDRG"
BASE COUNT          597 a         1051 c         1034 g          435 t
ORIGIN      
        1 gtgtagacgc tggcgccgcg cacgctggcg tcggggccgc tatcggagtg gagcgagata
       61 aagaggtccg cgcccgcctg ctgagcgacg cgcacgcgct gatccagcgg cacataggtg
      121 tcgtcgtccc gggtcagcac gaccttgtag cgcggcgagc gctccagccg ttccttcaac
      181 gccagggcgg cggcgaggtt gacgtccttt tcgtagcctt gggcgccgag cgctccgggg
      241 tcgtggccgc catgacccgg gtcgatgacg atgactttct tgagagagac cggggtgacc
      301 tgcggcggga tgatctgggg gcgcaacttg agggccaccg gcgtcgcgga ggccctggcg
      361 ctgatcatac ggacctgacc gggttgggag accacgtcga ccacgtagcg atagtggtcg
      421 atgccatcgg ccggcggcag caggaagcgg cccttgatcc gggcgtctgg cgccagatcg
      481 agctgcaggc gcgcgccgct ggaggtctgg tcgacgctcc aggccttcac caggccctgg
      541 ccggaaccct ggagcccgcc ggtcgctgaa accgtcggca gcaggagaat gacatggccg
      601 tcggcggcgc cgtcggagat gagtttggcg ctggcggcct ggtcgagatc catgaccaga
      661 cgagtctgct gagcgtcgcc tccaaggcga actttcagga gaccgccgat cacgccggcg
      721 gcatgagagg cgacggcggc ggccaggccc acggcggcgg ccagcgccgc ggccatcgcc
      781 acgcgccccc ggttccgcac caagatccct gccccaaccc gcatctgacc tcgcccccga
      841 ggggattcga aaaccaacga ctgaagagcc atatacgtgt gcggcaggta cataaacggt
      901 taacgaggtc ttgctcaggc cctctcatcg ggttcggctt tccttttgag ccccagtgtt
      961 gcaatgtccc gccgcgcgcc aaaccgcttc ccgcgttaag cgagggccaa gggtcgcgcg
     1021 aaccaagccc gcgtcagctg accgaattcc cggcgaccga cgctctatcc gatccgcgcc
     1081 acccggcgcg cctaggaaca cactcgatgg gcagcgctgc tcaagccact gttaggcctc
     1141 aagccccccg ggacgcgctt tgcggcgcct ccccggtcgg cgcgcgcgcc catcccacaa
     1201 atagccggct gcgcctggac ctcgcgtcca gcgcgcgccg cggagataat tctaatgtcc
     1261 aagaatatgt tgatcgatgc agcccacgcc gaagaaacgc gtgtggtggt cgtcgacgga
     1321 acccgcgttg aagagttcga tttcgagagt tccaaccgaa agcagctcag agggaacatc
     1381 tatctcgcca aggtgacgcg cgttgagccg tcgctgcagg cggccttcat cgagtatggc
     1441 ggcaatcgcc acggcttcct ggccttcaac gaaatccacc ccgactacta ccagatcccg
     1501 gtcgccgacc gcgaagcgct gatgcgcgaa gaggccgagg aagaggacga ccatcacgag
     1561 cccaaggggc gccgcaatgg ggcgaatggg ggcgccgcgg ccaatggcga gtctggctcc
     1621 gaggacgacg acgaggacca cgaagcctcc tccgaggacg acgacgacgt catggaggaa
     1681 gaggtcgcgc gccgccgccg ccggctgatg cgcaagtaca agatccagga agtgatccgc
     1741 cgccggcaga tcatgctggt gcaggtcgtc aaggaagagc gcggcaacaa gggcgcggct
     1801 ctgaccacct acctgtcgct cgccggccgc tacggcgtgc tgatgccgaa caccgctcgc
     1861 gggggcggca tcagccgcaa gatcgagacc gccaccgacc gccgccgcct gaagggcatc
     1921 gtccagagcc tcgacgtacc gcagggcatg ggcctgatcg tccgcaccgc cggcgccaag
     1981 cgcaccaagg ccgagctgaa acgcgactac gactacctgc tgcgcctgtg ggaaaacatc
     2041 cgcgagacca cgctccattc catcgcgccg gccctgatct acgaggaaga agacctcgtg
     2101 aagcgggcga tccgcgacct ctatgacaag gacatcgacg gcgtgttcgt cgagggcgag
     2161 gccggcttca aggaagcgcg cgacttcatg cgcatgctga tgcccagcca ggccaagaag
     2221 gtgcagctct accgcgagcc gacacccttg ttcgtcaagc accgggtcga ggaccacctc
     2281 agccagatct actcgccggt cgtgccgctg cgcagcggcg gctacctggt gatcaaccag
     2341 accgaggccc tggtcgccgt cgacgtcaac tccggcaagt ccacccgcga gcgcaatatc
     2401 gaagcgaccg cgctgaagac caacatggag gcggcggagg aagccgcccg ccagctgcgc
     2461 ctgcgcgacc tggccggcct gatcgtcatc gacttcatcg acatggacga gtcgaagaac
     2521 aaccggtccg tcgagaagaa gctgaaggac tgcctaaagg acgaccgcgc ccgcgtgcag
     2581 atgggcaaga tcagttcctt cggcctgatg gaaatcagcc gccagcgccg ccgctccggc
     2641 gtgctggaag gcaccaccca cgtctgcgag cattgccagg gcaccggccg cgtgcgctcg
     2701 gtggaatcca gcgcgctggc cgcgctgcgc accctggagc tcgaagccct gaagggtggc
     2761 ggtgaggcga cgctcaagac gccgcgcgcc gtggggctct acatcctcaa cgaaaagcgc
     2821 gcgcacctgg cgcgcctgca gcagaccatg ggtctcttcg tcaccgtcgt ggtggatgac
     2881 gacatggccc acgccgactg cctgatcgag cgcacctcga tggagacccg ccccgaccac
     2941 gccgtggtgg cggcgccgtc gcaggcctac gaggcgatgg tcgacgacgg ctatgacgat
     3001 gaggccttcg aggacgagca cgaagacgag gaagacgaag ccgcgatcga gcgcgaggac
     3061 accgacgacg acgaaccccg cgccatcgcc gccggccatg gacgcgaaga tcggggc
//
LOCUS       DATAJL010000650         2564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_50235,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000650 DATAJL010000000
VERSION     DATAJL010000650.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50235"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            240..>2564
                     /locus_tag="VHN39_12485"
     CDS             240..>2564
                     /locus_tag="VHN39_12485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HEX2817209.1"
                     /translation="MRGLTRALRFGPSMVSLSALIWAAPALAQTTTTTVSANTTTPLA
                     TSAAGNIVINTGISVKPTAGAAVTIDSNNTVFNSGLIQFQNLDNVTGVLALGGHTSTI
                     DNTGTIEVDDTSTTTTDSNGIVHGPFANGTGRFGVRVVAPGDFTGDIVNEATGAITVK
                     GNSSAGISVETNLTGALTNLGAISIVGDNSYAIHTTGSVGGNVTLGGTISGNGQFVQG
                     VNLGGDVAGSVVIDGTVTTSGYRFTTRSTDPNVLKELGADDLLQSLATVTVGGSVAKG
                     VLVDVAVTDLLGNVTGATGSISSIAAAPALVVGAAGRSITLGNVGTDVDAFGLELKGN
                     VSGAGTYDGVAAAGVQLGVANGLAVDTTGGVRVTGSLTASAFAADAVALHLNSGVIVP
                     VLRNEGGITGALLSDAQGATASAIIIEPGANTPALQNANTISAQVAGQKADAAAIVDR
                     SGTLTEVENIGIIAAGRTLTDVTQAVTGQDIALDLRNNTSGVHIIQNSPSGATLVPAI
                     TGSVTLGSGPDRVEIFAGSVKGDLELGAGANTLDIENGATVTGALDAKGGTLGLTVGT
                     GTLQINSASQLSLTNLALGAGTTLIVTADPSVGLATKLDVNGAATIATGATIGLRLAS
                     IQQGSATYTLIRANQLTSGAIDLNLLGSVPYLYTASLQTNAAAGTISATLGLKSAQQL
                     ALPASSAGAYQAVIANVGRDPALEGALLIQTSRTGLINLYNQLLPNHSGSVFNIVAAS
                     IGAFSKPLDDRQDPVGGGFWMQETNLGVFSNGKAD"
BASE COUNT          463 a          923 c          819 g          359 t
ORIGIN      
        1 tgggaaatca ggatttggcc gactgtttcg gcctgcgata caagattgaa acgatcagga
       61 cgcttctggc cgtgccgcaa aagatatcga ccgcgcgaag tcattcgctg gacacaatca
      121 tgctcaatcg atcggtccgt cgtgagggat gtaagtagat gactgggtat ttttcgccgg
      181 acgccgcccg gaaagccgcc cagagcgtat cccggagcgc gtcaagccgc ccggcgcgcg
      241 tgcgtggatt gacccgcgcc ctgcggttcg gcccctcgat ggtcagcctc tcggcgctga
      301 tctgggcggc ccccgcgctg gcccagacca ccacgaccac ggtctcggcc aacaccacca
      361 cgccgctggc gacctcggcg gccggcaaca tcgtcatcaa taccggcatc tcggtgaagc
      421 ccaccgccgg cgcggccgtg actatcgaca gcaacaacac ggtcttcaac agcggcctca
      481 tccagttcca gaacctggac aatgtcaccg gcgtgctggc gctgggcggg cacaccagca
      541 ctatcgacaa caccggcacc atcgaggtcg acgacacctc gacgacgacg accgattcga
      601 acggcatcgt gcacggcccc ttcgccaacg ggaccggccg ctttggcgtc cgggtggtcg
      661 cccccgggga cttcaccggc gacatcgtca acgaagccac cggcgcgatc acggtgaagg
      721 gcaacagttc cgccggcatc tcggtcgaga ccaacctcac cggcgcgctc accaacctcg
      781 gcgccatcag catcgtgggg gacaacagct acgccatcca cacgaccggc tcggtcggcg
      841 gcaatgtgac gctcggtggc acgatcagcg gaaacgggca gttcgtgcag ggcgtgaacc
      901 tgggcggaga cgtcgcgggc tcggtggtga tcgacggcac cgtgaccacc agcggctacc
      961 gcttcaccac ccgcagcacc gatccgaatg tcctcaagga gctgggcgcc gacgatctgc
     1021 tgcaaagcct cgcgaccgtg acggtcggcg gcagcgtcgc caagggcgtg ctggtcgacg
     1081 tcgccgtcac cgacctgttg ggcaatgtca cgggggccac cggctcgatc agttcgatcg
     1141 ccgcagcccc ggccctggtg gtcggcgccg ccggccgcag catcacgctc ggcaatgtcg
     1201 gcacggacgt cgacgccttc ggcctggagc tcaagggcaa tgtgtccggc gccggaacct
     1261 atgacggcgt ggccgcggcc ggggtgcagc ttggcgtcgc caacggcctg gcggtcgaca
     1321 ccacgggcgg cgtccgggtt accggcagcc ttaccgcatc cgccttcgcg gccgacgccg
     1381 tcgccctgca cctgaacagc ggtgtcatcg tcccggtcct gcgcaacgag ggcgggatca
     1441 ccggcgcgct gctctcggac gcgcaaggcg cgactgcaag cgccatcatc atcgagcccg
     1501 gcgccaacac gccggcgctg cagaacgcca acaccatttc cgcccaggtc gccggccaga
     1561 aggccgacgc cgcagcgatc gtcgaccgct cgggcacgct caccgaggtg gagaacatcg
     1621 gcatcatcgc cgccgggcgc accctgaccg acgtcaccca ggcggtgacc ggccaagaca
     1681 tcgcgctcga cctgaggaac aacaccagcg gcgtgcacat catccagaac tcgccgagcg
     1741 gcgccaccct ggtcccggcg atcaccggct cggtgaccct gggatcgggt cctgaccgcg
     1801 tggaaatctt cgcgggctcc gtcaagggcg atctcgaact gggcgccggg gccaacacgc
     1861 tcgacatcga aaacggagcc accgtgaccg gcgcgctgga cgccaaaggc ggcactttgg
     1921 ggctgacggt cgggaccggg accctgcaga tcaacagcgc cagtcagctg agcctgacca
     1981 acctggctct gggggcgggc acgaccctga tcgtcacagc cgatccgtcg gtgggcctcg
     2041 ccaccaagct ggacgtcaat ggcgcggcca cgatcgccac gggggcgacg atcggcctgc
     2101 ggctggcctc catccagcag ggctccgcca cctacaccct gatccgggcg aaccagctca
     2161 ccagcggggc gatcgacctc aacctgctgg gcagcgtgcc ctatctctac accgccagcc
     2221 tgcagaccaa cgccgcggcc ggaaccatct cggcgacgct gggcttaaag agcgcccagc
     2281 agctcgccct gccggccagc agcgccggcg cctatcaggc ggtgatcgcc aatgtcgggc
     2341 gcgacccggc gctggagggc gcgctgctga tccagaccag ccggactggt ctgatcaacc
     2401 tctacaacca gttgctcccc aaccactccg gcagcgtgtt caacatcgtc gcggccagca
     2461 tcggcgcctt ctccaagccg ctggacgacc ggcaggatcc ggtgggcggc gggttctgga
     2521 tgcaggagac caacctcggg gtgttctcca acggcaaggc cgac
//
LOCUS       DATAJL010000651         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_50276,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000651 DATAJL010000000
VERSION     DATAJL010000651.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50276"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..704)
                     /gene="plsY"
                     /locus_tag="VHN39_12490"
     CDS             complement(<1..704)
                     /gene="plsY"
                     /locus_tag="VHN39_12490"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEX2817210.1"
                     /translation="MFEGLTTIQIAAALVGGYLLGSIPFGVIVMKAAGAGDPRAIGSG
                     NIGATNVLRSGRRGLAALTLLGDGGKGALAVLIAWLATRAASDEAQATLTAFAGGAAF
                     VGHLFPVWLGFKGGKGVATFFGTLIAAAWPVGLLAGATWIAMAALFRFSSLAALAAVA
                     LSVIYSALLFHRPLPVTILCAGMALLVYIRHEANIRRLLKGEEPRIGGSKNEEPAAIN
                     LGHNGGPKLESQADYYG"
     gene            complement(736..1038)
                     /locus_tag="VHN39_12495"
     CDS             complement(736..1038)
                     /locus_tag="VHN39_12495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015275824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HEX2817211.1"
                     /translation="MLIVDALKALGNDRRLLILDWLKDPRAHFREQVDGDLVDDGVCG
                     LLIAEKLAVSQPTLSEHMRILVQAELVTAKRIKQWTFYRRNEPRIAALKSAFTTEV"
     gene            1096..1467
                     /locus_tag="VHN39_12500"
     CDS             1096..1467
                     /locus_tag="VHN39_12500"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2817212.1"
                     /translation="MDKLEDRYDIDAEVLFGPGQHMDVTAVAAAVQPWWNRTLTAVND
                     AVVRLGVLDGDFHWHKHDGEDEFFYVLEGHLDIELEDRTVSLAPGQGVTIPRGVMHLP
                     HARGRTVVLMVEKAGVVPTGD"
     gene            1512..>1895
                     /locus_tag="VHN39_12505"
     CDS             1512..>1895
                     /locus_tag="VHN39_12505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817213.1"
                     /translation="MIKVKEQCSQLELGFSRRILRLEVSEMRKLSILLIGCMVAAMAP
                     QGATAQPGPYGNQGRQPPSQQSGQYYYNGRWVDQNEWQRHGAERDRWAQRYQQRKPHD
                     DNTALIAGILGFALGAAIVGSHEQAE"
BASE COUNT          335 a          639 c          640 g          281 t
ORIGIN      
        1 ccgtaatagt cggcttggct ctcaagcttc gggccgccgt tgtgaccgag attgatggcc
       61 gcaggctcct cgtttttcga tccgccgatg cgcggctcct cgcccttcaa caggcggcgg
      121 atgttggcct cgtggcggat gtagaccagg agagccatgc cggcgcacag gatcgtcaca
      181 ggcagtggcc ggtgaaacag cagcgccgaa tagatgacgc tgagcgccac ggccgcgagc
      241 gccgccagcg aggagaagcg gaacagggcc gccatcgcga tccaggtcgc gcccgccagc
      301 aggcctaccg gccaggccgc ggcgatcagg gttccaaaga aggtcgccac gcccttgccc
      361 cccttgaagc ccagccagac cgggaacaag tggcccacga aggccgcgcc gcccgcgaac
      421 gcagtcagcg tcgcctgcgc ctcatcgctg gcggcgcgcg tcgccagcca ggcgatcagc
      481 accgcgagcg cccccttgcc gccgtcgccc agcagagtca gagccgccag gccgcggcgg
      541 ccgctgcgca gcacattggt cgccccgata ttgccagagc cgatggcgcg cggatcgccg
      601 gcgccggccg ccttcatgac gatcaccccg aacgggatcg aacccagcag gtagccgccg
      661 acgagcgccg cggcgatctg gatggtcgtc aggccttcga acatggacgc ctcccccgca
      721 gcgagagcct aacgcctaga cctcggtggt gaaagccgac ttcagcgcgg cgatgcgggg
      781 ctcgttccgg cgatagaagg tccactgctt gatacgtttg gcggtgacca gctcggcctg
      841 gaccaggata cgcatgtgct ccgagagcgt cggctggctg accgccagct tctcggcgat
      901 cagcaggccg cagaccccgt cgtccaccag gtcgccgtcc acctgctcgc ggaaatgggc
      961 gcgcgggtcc ttcagccagt ccaggatcag caggcggcgg tcgtttccga gcgccttgag
     1021 ggcatcgacg atgagcatat tgccaaatgg ctaagtcacg atacggtggc tccagactta
     1081 gagggaaccg ctgggatgga caagcttgag gaccgttacg atatcgacgc cgaggtgctg
     1141 ttcggacccg gccagcacat ggacgtgacc gccgtggctg ctgcggtcca gccctggtgg
     1201 aaccgcacgc tcaccgccgt caacgacgcg gtcgtgcgcc tgggcgtcct ggacggcgac
     1261 ttccactggc acaagcacga cggggaggac gagttcttct acgtcctcga aggccatctg
     1321 gacatcgagc ttgaggaccg cacggtcagt ctggcgccgg ggcagggcgt cacgatcccc
     1381 cgcggcgtca tgcacctgcc tcacgcccgg ggccgcacgg tggtgctgat ggtggaaaag
     1441 gccggcgtgg tcccgacggg ggactgacac cgcgcttggg gccaaatgcc gggcggcacg
     1501 gacggccgcg cttgatcaag gtcaaggaac agtgttctca gcttgaacta ggattctccc
     1561 gtcgcatcct gcggctggag gtcagtgaaa tgcgcaagct ctcgatcctt ctcatcggtt
     1621 gcatggtggc cgcgatggcg ccgcaggggg cgacggcgca gccgggtccc tatgggaatc
     1681 agggccgtca gccgccttcg cagcagagcg gccagtacta ttacaacggc cgctgggtcg
     1741 atcagaacga gtggcagcgg cacggcgccg agcgcgaccg ctgggcgcaa cgctaccagc
     1801 agcgcaagcc ccacgacgac aacaccgcct tgatcgccgg catcctgggc ttcgcgctcg
     1861 gcgcggcgat cgtcggctcc catgaacagg ccgaa
//
LOCUS       DATAJL010000652         3543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_120718,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000652 DATAJL010000000
VERSION     DATAJL010000652.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120718"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..557
                     /locus_tag="VHN39_12510"
     CDS             <1..557
                     /locus_tag="VHN39_12510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX2817214.1"
                     /translation="TIEAIFELYDRNGARHYGEGVSQLEHALQCAQLATLDGAGDALV
                     AAALLHDLGHLLESEGALSAEADARHEVRGATALRPLFGPEVIQPIALHVAAKRYLCA
                     TEAGYYDGLSEASRQSLRLQGGPLSAHQARRFEGGAYFAEAVRLRRYDEDGKLDGAAS
                     TPLRDYGDLLSGLCARDAPVMVWP"
     gene            complement(571..795)
                     /locus_tag="VHN39_12515"
     CDS             complement(571..795)
                     /locus_tag="VHN39_12515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817215.1"
                     /translation="MDEAFQILDMIARGSQIDSAAEERWIPAFMTIRWVSRSSKGFVL
                     TPEGRQGHGALVMDRPSLGPRRSRALQLAD"
     gene            complement(1015..1944)
                     /locus_tag="VHN39_12520"
     CDS             complement(1015..1944)
                     /locus_tag="VHN39_12520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEX2817216.1"
                     /translation="MIYALRHRTTYSYEERVSFARCVLRLTPRSSSTQAVLANAVTVA
                     PRPSDTRDGIGPFGEKTRTVVIDTPHTSLVIEAISRVDVHAPTPSDPKRSPSWETVRA
                     ESFESRTLGPEGPAAYLYPTRRTPTAQPITEYARQSFAKGRSIVESAAELMSRIHKEF
                     TYDPEATTVSTAALDAFTARHGVCQDFAHVMISGLKGLGLPAAYVSGYLRTIPPPGKP
                     RLEGADATHAWVTLWCGDTLGWIGFDPTNALVVQNDHIVLAIGRDYSDVAPIDGIILA
                     PGHQTLKVEVDVIPEEAVAVTERQRPRANTSAS"
     gene            complement(1941..>3543)
                     /locus_tag="VHN39_12525"
     CDS             complement(1941..>3543)
                     /locus_tag="VHN39_12525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX2817217.1"
                     /translation="NSSSRLGTPGMLQAIRAGGVAMLNMPGSGVVESKALLGFLPKLC
                     RRLLGEDLLMPNIATWWCGQPVERGTVGRHLDELAIAPAFNAQGEDGALNRPRLMADL
                     SPAEQADLRQRLADRPGDFVGQEVVRLSTMPVLRDGKLEPAPFVLRVFAAWTPEGMKI
                     MPGGFCRTSERLDVRAISMGGDARTADVWVIDDKPVERVSLLASQDDVKVRRIMGHLP
                     SRAADNLFWLGRYIERAEATLRLARSLCTSLMDSESAAHASGETLASLQQLLIDWGAL
                     DEKHLGAGALESARDALHDQAAYGSVIYLVRGARRTAASMRERLSADFWTLLVNLESE
                     LTEGAQTPLSEAEALQQVESALQILAALAGLAQENMNRVAGWRFLDMGRRIERGINTC
                     RITRTLAHDGSTPDDLDLLLDLADSQITYRARYLVGLALTPVRDMVMLDPFNTRSLAF
                     QVQTLKDHLALLPSLLADGMIEEPGKILLPLATEVETADAQHLTPARMQAFERTLLKL
                     SGAIADRYFLQGAHAVPTAKLGGLA"
BASE COUNT          551 a         1155 c         1269 g          568 t
ORIGIN      
        1 ccacgatcga ggcgatcttc gagctctatg accgcaacgg cgcgcgccac tacggcgaag
       61 gggtctcgca actcgagcac gcgttgcagt gcgcccagtt ggcgacgctg gacggcgccg
      121 gcgacgctct ggtcgccgcg gccttgctgc acgatcttgg ccatctcctg gagagcgaag
      181 gcgctctgtc cgccgaagcc gacgcccgcc acgaggtcag gggggccacc gcgctgcgcc
      241 cgctgttcgg acccgaggtg attcagccga tcgccctgca cgtggcggcc aagcgctacc
      301 tgtgcgccac ggaggccggc tattatgacg gcctgagcga ggcctcgcgt cagtctctgc
      361 gactccaggg cggcccccta tcggcgcacc aggcgcggcg gttcgagggc ggcgcctact
      421 tcgccgaggc cgtgcgcctg agacgttacg atgaggacgg caagctcgac ggcgcggcca
      481 gcacgccgct ccgcgattac ggcgacctcc tgagcggcct ctgcgcgcgc gacgcaccgg
      541 tcatggtctg gccgtagcaa tccgcgtcga tcaatcggcg agttgtagcg cccgcgaccg
      601 ccgagggccg agcgaagggc gatccatcac gagggcgccg tggccctggc gaccctctgg
      661 cgtcaggacg aagcccttgg acgagcgcga cacccagcga atggtcatga acgccggaat
      721 ccagcgctcc tccgcggcgg aatcgatctg cgagccgcgg gcgatcatgt cgaggatttg
      781 gaacgcttcg tccatcgatg gtccccgcaa tcagcctcaa cctgcatccg ggcgccgctg
      841 acgataccat cctggccgcc gttggccagc gcaccaggtg cggtcaaagg atagggccgg
      901 cggcgcctag acggttgccg tagaggtggc ggtgcaggca gtccgaggtc gagttgtctg
      961 cgtatcagga ggcaactcga ccgctgctcg cgccgtgccg cccgcggact gttctcaact
     1021 ggcagaggtg ttagcccttg gacgttgacg ctcggtaacc gcgaccgctt cctctgggat
     1081 gacgtcgact tcgaccttca gggtttgatg gccaggcgcc aggatgattc cgtcgatggg
     1141 ggcgacgtcg gagtagtcgc ggccgatggc caggacgatg tggtcgttct ggacgacgag
     1201 tgcgttggtg gggtcgaagc ctatccagcc tagtgtgtct ccgcaccaga gggtgaccca
     1261 ggcgtgggtg gcgtcggctc cttcgaggcg aggcttcccg ggaggcggga tggtccgcag
     1321 gtagccgctg acgtaagcgg ccgggagccc caggccctta aggccggaga tcatcacgtg
     1381 cgcgaagtcc tggcagaccc catggcgggc cgtgaaggcg tcgagcgcgg ccgtagagac
     1441 cgtggttgct tccggatcgt aggtgaattc cttgtggatg cgggacatca gctcggcggc
     1501 ggactccacg atcgagcgcc cctttgcaaa actttggcgg gcatactcgg tgatcggctg
     1561 agcggtcggg gttcggcggg tcgggtagag gtatgcggcg ggcccctcgg gacccagcgt
     1621 ccggctctcg aagctttccg cgcgcaccgt ttcccaggaa gggctccgct taggatcgga
     1681 cggcgtcggg gcgtgcacat cgacccggga gatggcttcg atcaccagcg aggtgtgcgg
     1741 cgtgtcgatg accacggtgc gggtcttctc gccgaacgga ccgatcccgt cgcgcgtgtc
     1801 cgaaggccgc ggtgcgaccg tgacggcgtt ggcgaggacg gcctgtgtgg acgaactcct
     1861 gggggtcagc ctgagcacgc agcgtgcaaa gctcacccgt tcctcgtaac tgtaggtggt
     1921 gcggtggcgc agggcgtaga tcacgccaag ccgcccagct tcgccgtggg cacggcgtgg
     1981 gcgccctgca ggaaatatcg atccgcgatg gcgccggaga gtttcagcag cgtcctctcg
     2041 aaggcctgca tcctggccgg ggtgaggtgt tgggcgtcgg cggtctcgac ctcggtggcg
     2101 agcggcagca gaatcttgcc gggctcctca atcatgccgt ccgcgagcag agagggcagc
     2161 aacgccaggt gatccttaag cgtctgcacc tggaaggcca gcgagcgggt gttgaacgga
     2221 tcgagcatca ccatgtcgcg cacgggcgtg agcgccagac ccaccaggta gcgggcgcgg
     2281 taggtgatct ggctgtcggc caggtcgagc agcaggtcga ggtcgtctgg cgtggagcca
     2341 tcatgggcca gcgtgcgggt gatgcggcag gtgttgatgc cgcgctcaat gcgccgcccc
     2401 atgtcgagga aacgccagcc ggccacgcgg ttcatgttct cctgggcgag gcccgccagg
     2461 gcagcgagaa tctgcagggc gctttccacc tgctgcagcg cctcggcctc cgagaggggg
     2521 gtctgagcgc cttcggtcag ctcgctctcc aggttgacca gcagggtcca gaagtcggcg
     2581 gagaggcgct cgcgcatgct ggccgccgtg cgccgtgcgc cgcgcaccag atagatcacc
     2641 gagccgtagg ccgcctggtc gtgcagggcg tcacgggcgg attccagggc gccggccccg
     2701 aggtgctttt catccaaagc gccccagtcg atcagcagct gttgcagact ggcgagcgtc
     2761 tcgccgctcg cgtgggcggc ggattcggag tccatcaggc ttgtgcagag gctgcgcgcc
     2821 agccgcagtg tcgcctcggc gcgctcgatg tagcggccaa gccagaagag attgtcggcc
     2881 gcccggctgg gcagatggcc catgatgcgg cggaccttca cgtcgtcctg gctcgccaac
     2941 aggctcaccc gctccaccgg cttgtcgtcg atcacccaga catcggcggt gcgggcgtcc
     3001 ccgcccatgg agatggcgcg tacgtcgagg cgctcggagg tcctgcagaa gccgcccggc
     3061 atgatcttca tcccctccgg cgtccaggcg gcgaagaccc gcaggacgaa gggggccggc
     3121 tccagcttgc cgtcgcgcag caccggcatg gtcgaaagcc tcaccacctc ctggcccacg
     3181 aaatcgccgg gacggtcggc gaggcgctgg cggagatcgg cctgctccgc cggcgacagg
     3241 tcggccatta gccgcggccg gttgagcgcg ccgtcttcgc cctgggcgtt gaacgccggg
     3301 gcgatcgcca gctcgtcgag gtgacgcccg accgtgccgc gctcgacagg ctggccgcac
     3361 caccaggtgg cgatgttggg catcaacagg tcttcgccca gcagccgccg gcaaagcttc
     3421 ggcaggaagc ccaacagggc cttggactcc acaaccccgg agcctggcat gttgagcatc
     3481 gccacgccgc cggcgcggat cgcctggagc atacccggcg tcccgaggcg cgaggagcta
     3541 ttc
//
LOCUS       DATAJL010000653         1756 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_120733,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000653 DATAJL010000000
VERSION     DATAJL010000653.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120733"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VHN39_12530"
     CDS             complement(<1..221)
                     /locus_tag="VHN39_12530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX2817218.1"
                     /translation="MAIQAAGSVRALALVGPTSAGKTTLMEALLQVTGAVDRRVGGDK
                     VGDSSPEARARGHTVELNLAAFDFMGDRYS"
     gene            complement(374..>1756)
                     /locus_tag="VHN39_12535"
     CDS             complement(374..>1756)
                     /locus_tag="VHN39_12535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HEX2817219.1"
                     /translation="ELEPGHDGARFSYADALFRQQKAPQAIAQVEALLGRAPKDPAYL
                     NLYAACLALVGEDARVAAIYEGLLADYPKQPRLWLNYGHTLRAVGRREDAVAAYQKSL
                     ELAPGLGDAYWSLANLKVAALTSADEAAMLEALARPELTADDRLHLHYALGKALEDRG
                     DAQGAFGHYAEGAALRRAETAYDPDATTALVRRAQALFTPEFLADRAGMGSASDAPIF
                     IVGLPRSGSTLIEQILASHSQVEGTMELPDIGFIARGFADGYPEALKDLAGPALAALG
                     DGYIEATAVHRKLGRPFFIDKMPNNFLHVGLIQLILPHARIIDARRHPMGSGFSAFKQ
                     HFAQGQSFSYDLADLGRYYRDYVVLMAHFDAVLPGRVHRVIYEDLVEDTEREVARLLD
                     YCGLAFEEACLRFYETARSVRTVSSEQVRRPIFRGGLDQWRAYEPWLGPLKTALGPAL
                     EGWRRARTDS"
BASE COUNT          270 a          590 c          632 g          264 t
ORIGIN      
        1 gaatagcggt cgcccatgaa gtcgaaggcc gcgaggttca gttccaccgt gtggccgcgg
       61 gcgcgcgcct cagggcttga atcgccgacc ttgtcaccac ccacgcgccg atcgacggcg
      121 ccggtcacct gcaacagggc ctccatgagg gtggtcttgc cagcgctggt ggggcccacg
      181 agcgccagag cgcgcacgga ccccgctgct tggattgcca ttggttcgtc tcccaacacc
      241 ttaggcgcca gggacgcggg ggttagagag cttccgcctc catggcgcgg tttcgagacg
      301 gtcgcggacc gggccagggg ctcgcgccgc cctgatggca aaaccttacg ccccaaattt
      361 cggcggcgtc agatcacgaa tcggtgcgcg cgcgccgcca gccttcgagg gccgggccga
      421 gggccgtctt gagcgggccg agccagggtt cgtaggcgcg ccattgatcc aggcccccac
      481 ggaagatcgg ccggcgcacc tgttcggagc tgaccgtccg gaccgagcgc gcggtctcgt
      541 agaacctcag gcaggcctcc tcgaaggcca ggccgcagta gtccaggagg cgcgcaacct
      601 cgcgctcggt gtcctcgacg aggtcttcgt agatcacccg atggacgcgg ccgggcagca
      661 cggcgtcgaa gtgggccatg aggaccacat agtcgcggta gtacctgccg aggtcggcaa
      721 ggtcgtagga gaacgactgg ccctgggcga agtgctgttt gaaagcggag aagccggagc
      781 ccatggggtg gcgccgcgca tcgatgatcc tggcgtgcgg caggatcagc tggatcagac
      841 ccacgtgcag gaagttgttg ggcatcttgt cgatgaagaa cggccggccg agcttgcggt
      901 gcaccgccgt cgcttcgatg tagccgtcgc cgagcgccgc cagggccggg ccggcaaggt
      961 ccttcagggc ctccggatag ccgtctgcga agccgcgggc gatgaagccg atgtcgggca
     1021 gctccatggt gccctcgacc tgggagtggc tggccagaat ctgctcgatc agggtcgagc
     1081 cggagcgcgg caggccgacg atgaagatcg gcgcgtcgct ggccgaaccc atccccgcgc
     1141 ggtcggccag gaactccggc gtgaacaacg cctgagcgcg gcggaccagg gcggtcgtgg
     1201 cgtcagggtc gtaagcggtt tccgcgcgcc gcaacgccgc gccctcggcg tagtggccga
     1261 aggcgccttg cgcgtcgccc cggtcctcca aggccttgcc gagcgcatag tgcagatgca
     1321 gccggtcgtc ggcggtgagt tccgggcgcg ccagggcctc cagcatcgcc gcctcgtccg
     1381 ccgatgtgag cgcggccacc ttcagattgg cgaggctcca gtaggcgtcg cccaggcccg
     1441 gggcgagctc caggctcttc tggtaggccg cgaccgcgtc ctcccgccgc ccgaccgcgc
     1501 gcagggtgtg gccgtagttg agccacaggc gcggctgctt cggatagtcg gccaggagcc
     1561 cctcgtagat ggccgccacc cgggcgtcct ccccaaccag ggccaggcag gcggcataga
     1621 ggttcagata ggccggatcc ttcggcgcgc ggcccagcag ggcttcgacc tgcgcgatcg
     1681 cctgtggcgc tttctgctgg cgaaacagcg cgtcggcata gctgaaccgc gcgccgtcgt
     1741 ggccgggctc cagctc
//
LOCUS       DATAJL010000654         3780 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69042,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000654 DATAJL010000000
VERSION     DATAJL010000654.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3780
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69042"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..751)
                     /locus_tag="VHN39_12540"
     CDS             complement(<1..751)
                     /locus_tag="VHN39_12540"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817220.1"
                     /translation="MADIAMNPVGVAPAAPRFAPVSASYGRYALGLLVAIYTVNFLDR
                     QIITTIGESIKNDLHLTDTQMGALGGIFFAAVYTILGIPIARVADKANRPWVMTISLA
                     LWSGFTVLSGFARNYGVLAVARAGVGVGEAGCSPTAHSLLADYFPPQKRATALAIYSM
                     GISIGTLLGMAIGGIVAEHYGWRTAFLVAGAPGLAFAVLAVFTLRVAAQLIARLAQGE
                     HRQHREGQARRAGHQEGGPPAIVLGHDPADRH"
     gene            883..2049
                     /gene="argE"
                     /locus_tag="VHN39_12545"
     CDS             883..2049
                     /gene="argE"
                     /locus_tag="VHN39_12545"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008777 - acetylornithine deacetylase
                     activity [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HEX2817221.1"
                     /translation="MTDLAAAREILETLVGFDTTSRHSNLPLIEWVEGYLDRHAVPHR
                     RVASYDGTKSNLLATVGPAVEGGAVLSGHTDVVPVDGQPWTSDPFSIVERDGRLYGRG
                     TCDMKGFLALALAAVPDLIAANPRKPVHLAFSYDEEIGCLGAPAMIEVINRELPKPAF
                     VVVGEPTDMVAVNGHKGIAYFDVTVTGHEAHSSLTHLGVSAIMEAVKLMASLSALSER
                     LERDADPASPFTPKGATLTIGIVHGGTAGNILARECKFQFDLRCPPGLDPHKLLAPFF
                     AEAKALDAALKARAPEAGVRVSNYSDVPGFAPEPGGAAETFARRLAGDNGPARAVSYA
                     AEAGQFQRSGLSTVLCGPGSIEQAHQPDEYVEISQMERGVAFMRRLTEWAASAE"
     gene            complement(2021..3049)
                     /locus_tag="VHN39_12550"
     CDS             complement(2021..3049)
                     /locus_tag="VHN39_12550"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2817222.1"
                     /translation="MARAAAIGKSSAPEVSVVVVVYESGPTLGECLAAVRAQRFTDYE
                     VILIDNASSDRVAQAAHHADRKIRLIENGENLGFAAAVNQGARVAKGRWLALLNPDAY
                     ADPDWLARLLAATEANPTVHSFTSRQLMAEDPTKLDGLGDVMALAGYPFRGGYTHPNP
                     GVLEPGWVFSACGGAMLIERELFLRLGGFDERLFCYCEDVDLGYRLRLIGEPTLLVPD
                     AMVRHVGSASTGGRRSDFAVFHGTRNRFWVFVKDTPAVLFWLTLPLHVLATLVLFARH
                     ATRGEIVTPVRGLASGIKHLGVALAARREAQATRTASSWEIARAMTWNPLDLLLRRAF
                     IQRRRPTP"
     gene            3082..3636
                     /gene="rfbC"
                     /locus_tag="VHN39_12555"
     CDS             3082..3636
                     /gene="rfbC"
                     /locus_tag="VHN39_12555"
                     /EC_number="5.1.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008830 - dTDP-4-dehydrorhamnose
                     3,5-epimerase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase"
                     /protein_id="HEX2817223.1"
                     /translation="MTTITPLALAEVLHITPQRHGDARGWFSETWSHKALLAAGVDTQ
                     FVQDNQAFNAKRGTLRGLHFQRAPHAQGKLVRVLKGSIFDVAVDIRPGSPTYGRWVGA
                     TLTAEAGEQLWVPRGFAHGYVTTADDTELFYKVDGDYAPGLEGGVAWDDPDLGIAWPL
                     DGEPVLSDKDRVLPRLKDLPTAQF"
BASE COUNT          601 a         1387 c         1235 g          557 t
ORIGIN      
        1 catggcgatc ggcgggatcg tggccgagca ctatggctgg cggaccgcct tcctggtggc
       61 cggcgcgccg ggcctggcct tcgcggtgct ggcggtgttc accctgcgcg agccgcgcaa
      121 tcagctgagc cgcgacgcgc agggtgaaca ccgccagcac cgcgaaggcc aggcccggcg
      181 cgccggccac caggaaggcg gtccgccagc catagtgctc ggccacgatc ccgccgatcg
      241 ccatgcccag aagcgtcccg atggaaatgc ccatggaata gatggccagc gccgtcgccc
      301 gcttctgcgg cgggaagtag tcggccagca gcgagtgggc cgtcggcgaa cagccggcct
      361 cgccgacgcc gacgcccgcc cgcgccacgg ccagcacgcc atagttcctg gcgaaccccg
      421 acagcaccgt gaacccgctc cacagcgcta gcgagatggt catcacccac ggccggttgg
      481 ccttgtccgc cacccgcgcg atcgggatgc cgaggatcgt atagaccgcg gcgaagaaga
      541 tgccccccag cgctcccatc tgggtgtcgg tgaggtggag gtcgttcttg atgctctcgc
      601 cgatcgtcgt gatgatctgc cggtcgagga aattgaccgt gtagatcgcc accagcaggc
      661 ccagcgcgta gcggccgtag ctggcgctga ccggcgcgaa acgcggcgcg gcgggcgcga
      721 ctccgaccgg attcatggcg atgtcggcca tcctggacac tccccgatat cgttcttgtt
      781 gttggccggc agttagccac ggcccaggga tcggcgccag acggctttcc cccggccgct
      841 tttctttgag cgcctgaccc tgcgggtcta tggcttggcc ccatgacaga cctcgccgcc
      901 gcccgcgaaa tcctggaaac cctggtcggg ttcgacacca cctcgcgcca ttccaacctc
      961 cccctgatcg aatgggttga gggctatctc gacaggcacg ccgtgccgca ccggcgggtg
     1021 gcgagctacg acgggaccaa gtcgaacctg ctggccactg tcggcccggc cgtcgagggc
     1081 ggggcggtgc tgtcgggcca caccgacgtg gtgccggtgg acggccagcc ctggacctcc
     1141 gacccctttt ccatcgtcga gcgcgatggc cggctctatg gccgcgggac ctgcgacatg
     1201 aagggcttcc tggccctggc gctggccgcg gtgcccgacc tgatcgccgc caacccccgc
     1261 aaacccgtcc acctggcctt ctcctacgac gaggagatcg gctgcctggg cgccccggcg
     1321 atgatcgagg tcatcaaccg ggaactgccg aaaccggcct tcgtggtggt gggcgaaccc
     1381 accgacatgg tcgccgtcaa tggccacaag ggcatcgcct atttcgacgt cacggtgacc
     1441 ggccacgaag cccactccag cctgacccac ctcggcgtct cggcgatcat ggaggcggtg
     1501 aagctgatgg cctcgctgag cgccctttcc gaacggctgg agcgcgacgc cgaccctgcc
     1561 tcacccttca cccccaaggg cgcgacgctc accatcggca tcgtccacgg cggcacggcg
     1621 ggcaatatcc tggcgcggga atgcaaattc cagttcgacc tgcgctgtcc gccaggcctc
     1681 gatccccaca agctgctggc gcctttcttc gccgaggcca aggcgctgga cgcggccttg
     1741 aaggcgcgcg cgccggaggc tggcgtccgg gtcagcaact attccgacgt gccgggcttc
     1801 gcgccggaac cgggcggcgc ggccgagacc ttcgcccgcc gtctggccgg tgacaacggg
     1861 cccgcgcggg ccgtctcata tgcggcagag gccgggcagt tccagcgctc gggcctctcc
     1921 accgtcctct gcggcccggg ctccatcgaa caggcccacc agccggacga atatgtcgag
     1981 atctctcaga tggagcgcgg cgtcgccttc atgcgccgcc ttacggagtg ggccgcctcc
     2041 gctgaatgaa ggcgcggcgc agcagcaggt ccagcgggtt ccaggtcatg gcgcgcgcga
     2101 tctcccacga actcgccgtc cgcgtcgcct gagcctcgcg tcgggccgcc agcgcgacgc
     2161 ctaggtgttt gatcccggag gccagcccgc gcaccggcgt gacgatctcg ccccgcgtcg
     2221 catgccgcgc gaacagcacc agcgtcgcta atacgtgcag cggcagggtc agccagaaca
     2281 gcacagccgg ggtgtccttc acgaagaccc agaaccggtt cctcgtgccg tggaacaccg
     2341 cgaagtcgct gcgtcggccg ccggtcgagg ccgaccccac atggcgcacc atggcgtccg
     2401 ggaccagcag cgtcggctcg ccgatcagcc gcaggcgata gcccaggtcc acgtcctcgc
     2461 agtagcagaa cagccgctcg tcgaagccgc ccagccgcag gaacaactcg cgctcgatga
     2521 gcatcgctcc gccgcacgct gagaacaccc agccgggctc cagcacgccg ggattgggat
     2581 gggtgtagcc accgcggaac gggtagcccg ccagcgccat cacgtcgccc aggccgtcca
     2641 gcttcgtcgg gtcctcggcc atcagctggc gcgaggtgaa gctgtggacc gtcgggttcg
     2701 cctcagtcgc cgccagcagc cgcgccagcc agtccgggtc cgcataggcg tcgggattga
     2761 gcagggccag ccatcgcccc ttggccaccc gcgcgccctg gttcaccgcc gccgcgaacc
     2821 ccaggttttc gccgttctcg atcagccgga tcttgcggtc ggcatggtgc gcggcctggg
     2881 ccacccgatc gctggaggca ttgtcgatca ggatgacttc gtagtcggtg aaccgttgcg
     2941 cccgaaccgc cgccaggcat tccccaagcg tcgggccgct ctcatagacg accacgacga
     3001 cactgacctc aggcgcagaa gacttgccaa tcgccgcggc gcgcgccatc cgaaaggtca
     3061 ctcctaccca tccgagcgca aatgacgacg atcacgcccc tggccctcgc cgaggtcctg
     3121 catatcacgc cccagcgcca tggcgatgcg cggggctggt tctcggagac ctggagccac
     3181 aaggccctgc tggcggccgg cgtcgacacc cagttcgtgc aggacaacca ggcgttcaac
     3241 gccaaaaggg gcaccctgcg cggcctgcat ttccagaggg cgccgcacgc ccagggcaag
     3301 ctggtccggg tgctgaaggg ctcgatcttc gacgtcgccg tcgacatccg cccgggctcg
     3361 cccacctacg gccgctgggt cggcgccacg ctcaccgccg aggccggcga gcagctctgg
     3421 gtgccccgcg gcttcgccca cggctacgtc accaccgcgg acgacaccga gctcttctac
     3481 aaggtcgacg gcgactacgc gcctgggctc gagggcggcg tcgcctggga cgaccccgac
     3541 ctcggcatcg cctggcccct cgacggcgag cccgtgctct ccgacaagga ccgggtcctg
     3601 ccgcggctca aggacctgcc gacagctcaa ttctaatccg cccgtccccc ggaaagcggg
     3661 gacccgggct ttgggcctgg cgcagcagac gacgggaaga cacttgccaa ttccagctga
     3721 ggcgcaggtg cgatcggtgg cgacatctct gggggagatg gtgttccgcg gccctctcga
//
LOCUS       DATAJL010000655         1727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_50335,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000655 DATAJL010000000
VERSION     DATAJL010000655.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50335"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..295)
                     /locus_tag="VHN39_12560"
     CDS             complement(<1..295)
                     /locus_tag="VHN39_12560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817224.1"
                     /translation="MRFDIVDLAIFAFTALGVPLIVLLRYPMKRTGAAILFGVFGLFA
                     VALLLWRLVPLNVLARVPNADGTLEAIVAEAQPSLGNTKVLVEARGADSAEARQ"
     gene            complement(316..813)
                     /locus_tag="VHN39_12565"
     CDS             complement(316..813)
                     /locus_tag="VHN39_12565"
                     /inference="COORDINATES: protein motif:HMM:NF015506.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEX2817225.1"
                     /translation="MTFFLVLFAIAFAAVSAWLLWRALTRGEVVGHFAGVVRRADAPF
                     SFWLVVAVNIMALTVFGTAGVILAWRALVPPPVAQRATMLYPSRAVAQNASGLVILHC
                     TVTPAFGVKDCTVASETPTGMGFAASALQISALEILPQKDRARAAPGQVINLPIRFKM
                     PVKQP"
     gene            1101..1484
                     /locus_tag="VHN39_12570"
     CDS             1101..1484
                     /locus_tag="VHN39_12570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018083549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817226.1"
                     /translation="MTRILFVGQKPETVDFSDPSLPPGFDAEKINAGIALGVKKIEEH
                     GWNGDTCMITPDAAGSAMLETALARADYDCVVIGGGMRLPPKGLVLFETVVNIIHKAA
                     PNATIAFNTRPEDTADAAARQLKAA"
BASE COUNT          302 a          555 c          613 g          257 t
ORIGIN      
        1 cctgccgggc ctccgccgag tccgcgccgc gcgcctcgac caggaccttt gtgttgccga
       61 ggctcggctg ggcttcggcg acgatggcct ccagggttcc gtccgcgttg gggacgcgcg
      121 cgaggacgtt gagggggacc aggcgccaca ggagtagggc gaccgcgaag aggccgaaga
      181 cgccgaagag gatggcggcg cctgtccgct tcatcggata gcgcaggagc acgataagcg
      241 ggacgccgag cgcggtgaac gcgaagatgg ccaggtcgac gatgtcaaac cgcatccgtg
      301 aactccgtcg tcggcctagg gctgcttgac cggcatcttg aagcggatcg gcaggttgat
      361 gacctggccg ggcgcggcgc gcgcgcggtc cttctgcggc aggatttcga gtgcggagat
      421 ctgcagggcc gaggcggcga accccatgcc ggtcggggtc tcggaggcga cggtgcagtc
      481 cttgacgccg aaggccgggg tgaccgtgca gtgcaggatc accagccccg aggcgttctg
      541 cgccaccgcg cgcgacgggt agagcatggt cgcgcgctgg gccaccggcg gcgggacgag
      601 ggcgcgccag gcgaggatga cgccggccgt cccgaagacg gtgagggcca tgatgttgac
      661 ggccacgacc agccaaaagc tgaacggggc gtccgcgcgc cggaccacgc ctgcgaagtg
      721 tccgacgact tcgccgcggg tgagcgcacg ccacaacagc caggccgaga cggccgcgaa
      781 ggcgatggcg aagaggacta ggaagaaggt cacggggggc tcttggcggc ggcgggtgcg
      841 ctgagcttac acggtcgcgc cgggtaggag ggcgtcgtcc atccggaggc tggatagccc
      901 tgacgtccgg ggccgcagca aaccggccgg cagggactta cggcgcggcg cggtcggggt
      961 gggcggtggt taggtgcact gtcagcgtga cccaggttcc agccggcatg gaactattca
     1021 acgctccgca gcttcacatc tcgcctggcg agcgacgcgc gcggactctt cgatccacac
     1081 aacctcaatg gagaaaaccg atgacgcgca tactcttcgt cggccagaag cctgaaacgg
     1141 tcgacttttc ggacccctca cttccgcccg gcttcgatgc cgagaagatc aacgccggga
     1201 tcgccctggg cgtcaaaaag atcgaggaac acggctggaa cggcgatacg tgcatgatca
     1261 cgccggatgc cgctgggagc gcgatgctcg agacagcgct ggcgcgcgcc gactatgact
     1321 gtgtggtgat cggcggcggc atgcggctcc cacccaaagg cctcgtgctg ttcgagacgg
     1381 tcgtgaacat cattcacaag gccgcgccaa acgcgacgat cgccttcaac acgcggcccg
     1441 aagacaccgc ggacgccgcc gcccgtcagc tcaaggcggc ctgacggcgc gcgacgccaa
     1501 agagccttcc ccgcaaaacc ccagcggcta aggcgtcatt tcgttcttac tttgttcttg
     1561 attttcccgc gcatttgtga gaggcttcag gcagcgtggt gatgtgcgcc tcggcgccac
     1621 cctatccgct catccccgcg acccgaaggg cgggattttg ttgggctagc cgccctggct
     1681 cagagcttag acgcggtccc cccaccctgg cggctgcgcc gcctgtc
//
LOCUS       DATAJL010000656         4855 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_24337,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000656 DATAJL010000000
VERSION     DATAJL010000656.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4855)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4855)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4855
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24337"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1209)
                     /locus_tag="VHN39_12575"
     CDS             complement(<1..1209)
                     /locus_tag="VHN39_12575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0042953 - lipoprotein transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HEX2817227.1"
                     /translation="MSEPQAGVGGHAPPFGLWERMLANRYLRAKRSQGGVALISIISF
                     TGIMVAVAVLIVVMSVMNGFRAELLNKILGFNGHVFVTGGVLDGAARHPAVQRILAVP
                     GVTQAVPVIEAQAIAMGPGQITGAIVRGLSPKDLKATRIVAGNITKGDIRGFGQGEYG
                     GDVVVVGDRLAEQLGVKPGDNITLISPSGGATAFGGTPVQKSYVVGATFTAGMSQYDQ
                     AYIFMPLAQAQLFFGREGTVDAIDIRVTDPDKAASLKAAITRAAGPTALVADWTQRDS
                     SYWGALKVERNVMRLILMLIVAIAALNIISGLTMLVKNKGRDIAILRTIGAGQGAILR
                     IFFLAGASIGTLGTAAGLALGALVSIYIDPIQSFVEWATGQAVFSSDVYFLSRLPAKV
                     DWVEVSIIVGF"
     gene            complement(1206..2525)
                     /locus_tag="VHN39_12580"
     CDS             complement(1206..2525)
                     /locus_tag="VHN39_12580"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEX2817228.1"
                     /translation="MRLSRYFMPTLREAPADAQIVSHQLMLRAGMIRQEAAGIYAWLP
                     LGLKVLKKIEQVVREEMDRAGAIEVLLPTLQLADLWRESGRYDDYGDEMLRIKDRHDR
                     DLLYGPTAEEVITEIFRAYVKSYKDLPKNLYNIQWKFRDERRPRFGVMRGREFLMKDA
                     YSFDIDEVAARKSYNRMFLAYLNVYARLGLKAIPVKADPGPIGGDLSHEFIILADTGE
                     SEVFAHGDLVEMGAPGPDIDWDGDLEPMVNQRARLYAASDEMHDQARFEAEVPEDKRM
                     TARGIEVGHIFYFGEKYSKPMKALVTGPDGKDVPVHGGSYGVGVSRLVAGIIEASHDE
                     AGIIWPDAVAPFGVAVVNLRPGSAEVDAVAEQAYKALGELGKEPLLDDRDDRPGAKFA
                     SIDLVGIPWQLIVGPKGVAEGVVEIKRRATGERQTLPLDAALKVIAG"
     gene            complement(2600..2863)
                     /locus_tag="VHN39_12585"
     CDS             complement(2600..2863)
                     /locus_tag="VHN39_12585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1467 family protein"
                     /protein_id="HEX2817229.1"
                     /translation="MGGPLTLIAIYLTIWWTVLFAVLPLGVQSRADAGLPNDGSDPGA
                     PVDPKLKKKFITTTWISTVVFAILWLVIHFKLIDLSRLPGPHS"
     gene            complement(2863..3285)
                     /gene="mce"
                     /locus_tag="VHN39_12590"
     CDS             complement(2863..3285)
                     /gene="mce"
                     /locus_tag="VHN39_12590"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HEX2817230.1"
                     /translation="MIGNLNHVGVATPSIAASVKMYREMLGATDFSETFAMPEQGVWV
                     CFVNLPNAQIELIEPYGEASPITAFLEKNPKGGQHHVCFEVADILAARDEMRAKGATV
                     LGTGEPRIGAHGVPVIFLHPKDMGGVLVELMETPKGAH"
     gene            complement(3484..>4855)
                     /locus_tag="VHN39_12595"
     CDS             complement(3484..>4855)
                     /locus_tag="VHN39_12595"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX2817231.1"
                     /translation="VFQHPELGEVAIPAPPARLCETPASIRGLAHPIAAPPVWPPREP
                     PPGSGEGEAASPLDGVRVLDLGTVIAGAHAGGVLANLGADVVKIEPVEGDPFRSDGGG
                     FCAYNRGKRGLGLDLKQAVGRDLFYDLVRQADVVLDNYRFGVRTRLGIDYATLKAINP
                     RIISCSINAYGDKGPRATLPGFDPLLQAEGGMQAAQGGDDEPILHTIPVNDVATAAVV
                     SSAVIAALNARERTGEGQEIITSLMAQSLTFQLAEVVAYEGRPPNDKGGRDCLGPRAL
                     HRFYECADGWLALVCEQPREVEALGRALDVEVGGESLTAERDGELAQAIANSLSTRPR
                     DVTVQALLAAGVPAAPALRAPEALESEWLWENHTLERWTHPRLGDILGVRAYADFSRT
                     PAGFQHPTPDLGEHSTALLTELGVTPERIEALLATGAVFEPVHIAPHLAKSARTGNDN
                     AALSVS"
BASE COUNT          776 a         1608 c         1693 g          778 t
ORIGIN      
        1 gaaaccgacg atgatcgaga cctcgaccca gtccaccttg gccgggaggc gggagaggaa
       61 atacacgtcg gaggagaaga ccgcctggcc cgtcgcccat tccacgaagc tctggatcgg
      121 gtcgatgtag atcgagacca gcgcgcccag cgccaggccc gcggcggtgc ccagcgtccc
      181 gatgctggcg ccagccagga agaagatccg caggatcgcg ccctgcccgg ctccgatggt
      241 ccgcagaatc gcgatgtcgc ggcccttgtt cttcaccagc atggtgaggc ccgagatgat
      301 gttcagcgcc gcgatcgcca cgatcagcat taggatcagg cgcatgacgt tgcgctcgac
      361 cttcagcgcg ccccagtagg aactgtcccg ctgggtccag tcggcgacca gggcggtagg
      421 gccggcggct cgggtgatcg ccgccttcag gctggcggcc ttgtcgggat cggtgacgcg
      481 gatgtcgatg gcgtcgaccg tgccctcgcg gccgaagaac agctgggcct gcgccagcgg
      541 cataaagatg taggcctggt cgtactggct catcccggcg gtgaaggtcg cgccgaccac
      601 ataggacttc tggaccggag tcccaccgaa ggccgtggcg ccgccagacg gcgagatgag
      661 cgtgatgttg tcgccgggct tgacccccaa ctgctcggcc agccggtccc cgaccaccac
      721 cacgtcgccg ccatactcgc cctggccgaa gccccggata tcgcccttgg taatgttgcc
      781 ggcgacgatg cgggtggctt tcaggtcctt gggcgagagg ccgcggacga tggcgccggt
      841 gatctggccg gggcccatgg cgatggcctg ggcctcgatc accgggaccg cctgggtgac
      901 gccgggcact gccaggatac gctggaccgc cggatggcgc gctgcgccgt ccagcacgcc
      961 gccggtgaca aagacgtggc cgttgaagcc gagaatcttg ttcagcagct cggcccggaa
     1021 gccgttcatc accgacatca ccacgatcag cacggcgacg gcgaccatga tcccggtgaa
     1081 ggagatgatc gagatcagcg ccaccccgcc ctggctgcgc ttggcacgca gatagcggtt
     1141 ggccagcatg cgttcccaca ggccgaaggg cggcgcgtgg ccgccaacgc cggcctgggg
     1201 ttcactcatc ccgcaatgac cttgagcgcc gcgtcgagcg gcagggtctg gcgctcgccg
     1261 gtggcgcggc gcttgatctc gacgacgccc tcggcgacgc ccttggggcc gacgatcagc
     1321 tgccagggga tgcccacgag atcgatggat gcgaatttgg cgccgggccg gtcgtcgcgg
     1381 tcgtccagca acggctcctt gccgagctcg ccaagcgcct tgtaggcctg ctcggccacc
     1441 gcatcgacct cggcgctccc cggccgcagg tttacgacgg ccaccccaaa gggcgccaca
     1501 gcgtcgggcc agatgatccc ggcctcgtcg tggctggcct cgatgatccc ggccaccagg
     1561 cgcgagacgc cgacgccata ggacccgccg tgaaccggga catccttgcc gtcggggccg
     1621 gtgacgaggg ccttcatcgg cttggagtac ttctcgccga agtagaaaat gtggccgacc
     1681 tcgatgccgc gagcggtcat ccgcttgtcc tcggggacct cggcttcgaa gcgggcctgg
     1741 tcgtgcatct cgtcgctggc ggcgtagagg cgcgcgcgct ggttgaccat cggctccagg
     1801 tcgccatccc agtcaatgtc ggggcctggc gcgcccattt ccacgaggtc gccgtgggcg
     1861 aagacctcgc tctcgccggt gtcggccagg atgatgaact cgtggctgag gtcgccgccg
     1921 atcgggccgg gatcggcctt caccgggatc gccttcagcc ccagtcgcgc atagacattg
     1981 aggtaggcca ggaacatccg gttgtaggac ttgcgcgccg cgacctcgtc gatgtcgaag
     2041 gaataggcgt ccttcatcag gaactcgcgg ccgcgcatga cgccgaagcg ggggcggcgc
     2101 tcgtcgcgga acttccattg gatgttgtaa agatttttcg gcaagtcctt gtaggacttc
     2161 acataagccc gaaagatctc ggtgatcacc tcttccgccg tggggccata gagcaggtcg
     2221 cggtcgtggc ggtccttgat gcgcagcatc tcgtcgccgt agtcatcgta gcggccgctc
     2281 tcgcgccaca ggtcggcgag ctgcagggtc ggcaacagaa cctcgatggc gccggcccgg
     2341 tccatctcct cgcgcaccac ctgctcgatc tttttcagca ccttcaggcc cagcggcagc
     2401 cacgcgtaga tgcccgccgc ttcctggcga atcatgccgg cgcgcagcat cagctggtgg
     2461 gagacgatct gggcgtcggc gggggcctcg cgcagcgtgg gcatgaagta gcgcgacagg
     2521 cgcatgagct aggggctttc cgaaagaacc gtgggcggag ggctctgata gcctccgcct
     2581 aggcggattg gcaacgcgtt cagctgtgcg ggcccggcag gcgcgacagg tcgatcagct
     2641 tgaagtggat cacgagccac aggatcgcga agaccacggt cgaaatccag gtggtggtga
     2701 tgaacttctt cttgagcttg gggtcgaccg gcgcgccggg atcggagccg tcattgggca
     2761 ggccggcatc ggcgcggctc tggacaccca gcggcaggac cgcgaacagc accgtccacc
     2821 agatggtcag atagatggcg atcagggtga gcggcccgcc catcagtgcg cgcctttcgg
     2881 cgtttccatg agttccacca gcacgccgcc catgtccttg gggtgcagga atatcaccgg
     2941 tacgccgtgg gcgccgatgc gcggctcgcc ggtccccagc acggtcgcgc ccttggcccg
     3001 catctcgtcg cgggcggcga ggatgtcggc cacctcgaaa cagacgtggt gctggccgcc
     3061 cttggggttc ttctccagga aggcggtgat cggagacgcc tccccgtagg gttcgatcaa
     3121 ttcgatctgg gcgttgggca ggttgacgaa acagacccag acgccctgct ccggcatggc
     3181 gaaggtctcc gagaagtcgg tggcgcccag catctcgcgg tacatcttca ccgaggctgc
     3241 gatggagggt gtggcgacgc ccacgtggtt caggtttccg atcatgggag gcggtatagg
     3301 ccgccgcgcc caacccctcc agcctgatcg gtcatgtccg gcgtccgcgc acgaaaaacc
     3361 cccggtgcgg ggggcacacc ggggatcact cagtactgcg gcggatgtag atctgccgtg
     3421 actgaaaatc gcgcccggcg gtttgcagaa ggtaaagatc ggcgacgaaa acccaagcgg
     3481 ccctcacgac actgaaagcg cggcgttgtc gttcccggtc cgggccgact tggccaggtg
     3541 cggggcgatg tgaaccggct cgaagaccgc gcccgtggcg agcagggctt cgatccgttc
     3601 gggcgtgacg ccgagctcgg tgagcagggc tgttgaatgc tcgcccaggt ccggagtcgg
     3661 gtgctggaag ccggccgggg tgcgggagaa atcggcgtag gcgcgaacgc ccaggatgtc
     3721 gcccagcctg ggatgggtcc agcgttccag ggtgtggttc tcccacagcc attcgctctc
     3781 cagcgcctcc ggggccctga gcgccggggc ggctgggacg ccggcggcca gcagggcctg
     3841 gacggtcacg tcgcgcggac gggtcgaaag cgaattggcg atagcctgcg ccaattcgcc
     3901 gtcgcgctcg gcggtcagac tctcgccgcc gacctcgacg tccagggcgc ggcccagagc
     3961 ctcgacctcc cgcggctgct cgcagacgag cgccagccag ccgtcagcgc attcgtagaa
     4021 acggtggagc gcgcggggac ccaggcagtc gcgtccgcct ttgtcgttgg gcggacgtcc
     4081 ctcgtaggcc accacctcgg cgagctggaa ggtcaggctc tgggccatca ggctggtgat
     4141 gatctcctgg ccctcgccgg tgcgttcccg ggcgttcagc gcggcgatca cggccgagga
     4201 gacgaccgcg gccgtcgcca cgtcgttgac cgggatggtg tgcaggatcg gctcgtcgtc
     4261 gccgccctgg gcggcttgca tcccgccctc ggcctgcagc agcggatcga agcccggcag
     4321 ggtcgcgcgc gggcccttgt cgccataggc gtttatcgag caggagatga tccgcggatt
     4381 gatggccttc agcgtcgcgt agtcgatgcc gagccgcgtg cgcaccccga agcgatagtt
     4441 gtccagcacc acgtcggcct ggcggaccag gtcgtagaag aggtcccggc ccaccgcctg
     4501 cttcaggtcg agccccaggc cgcgcttgcc acggttgtaa gcgcagaagc cgccgccatc
     4561 gctgcggaac gggtctccct cgacgggttc gatcttgacc acgtcggcgc ccaggttggc
     4621 caggaccccg cccgcatggg cgccggcaat caccgtgccc aggtcgagga cgcgcacgcc
     4681 atccaggggc gaggcggctt cgccctcccc gctgcccggc ggcggctcgc gcggcggcca
     4741 gaccggcgga gcggcgatcg gatgggcaag gccgcggatc gaggccgggg tttcgcagag
     4801 tctggccggc ggcgcgggga tcgccacctc acccagttcc ggatgctgaa agacc
//
LOCUS       DATAJL010000657         3127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69065,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000657 DATAJL010000000
VERSION     DATAJL010000657.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3127
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69065"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(292..1017)
                     /gene="phbB"
                     /locus_tag="VHN39_12600"
     CDS             complement(292..1017)
                     /gene="phbB"
                     /locus_tag="VHN39_12600"
                     /EC_number="1.1.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017505756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018454 - acetoacetyl-CoA reductase
                     activity [Evidence IEA];
                     GO_process: GO:0042619 - poly-hydroxybutyrate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetoacetyl-CoA reductase"
                     /protein_id="HEX2817232.1"
                     /translation="MARVALVTGGTRGIGRAIVERLTADGFKVAAGYSGNEAAAEALK
                     RETGAMVIKGNVGNFADCQHAVAAVEAELGPIDILVNNAGITRDGVFHRMNSEQWSEV
                     IRVNMDSLFNMTRQVIEGMRDRSWGRIINISSINGQKGQVGQTNYSAAKAGMIGFTKA
                     LALENAKKGVTVNCIAPGYIDTEMVQAVPEKVLEGIIGQIPVGRLGRGDEIADMVAFL
                     AGERAGYVTGTTLSLNGGQYLVG"
     gene            complement(1073..2248)
                     /locus_tag="VHN39_12605"
     CDS             complement(1073..2248)
                     /locus_tag="VHN39_12605"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HEX2817233.1"
                     /translation="MSDIVIVSAARTAVGSFNGALSSLPAHELGKVAILAAVERAGIQ
                     LSDVDEVVLGQVLQAGAGQGPARQAAVNAGIPIESPAWSLNQLCGSGLRAVALGAQQI
                     KDGSAAIVIAGGQESMSQSPHAQNLRNGQKMGDLAFVDTMIKDGLWDAFHGYHMGQTA
                     ENIAARWQITREDQDKFAVGSQNKAEAAQKSGRFASEIAPVTIKGRKGDIVVDQDEFI
                     RAGTTLESISGLRPAFTKDGTVTAANASGLNDGAAALVLMTAEEAQKRGLKPLARIAS
                     WAHAGVDPEIMGTGPIPASRKALERAGWSVADLDLIESNEAFAAQSICVVRDLGLDPA
                     KVNVNGGAIAIGHPIGASGARILTTLLHEMSRTDATKGLATLCVGGGMGVAMCVEKV"
     gene            2432..3043
                     /gene="phaR"
                     /locus_tag="VHN39_12610"
     CDS             2432..3043
                     /gene="phaR"
                     /locus_tag="VHN39_12610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate synthesis repressor PhaR"
                     /protein_id="HEX2817234.1"
                     /translation="MADTQETAAPGERVIIKKYANRRLYNTASSSYVTLEHLSEMVKQ
                     NIDFVVYDAKTNEDITRSVLTQIIFEEESQQGQSLLPIQFLRQLIGFYGNSMQAFLPS
                     YLELSLASFTQQQERMRTQFTSLSQAPGATVFDEQVRQNLALFDRAMKMFSPFAYAPK
                     SEEPAPAAPKAEPAPAPADDALVVLRKQMEDMQAQIEKLAGKR"
BASE COUNT          493 a         1081 c         1008 g          545 t
ORIGIN      
        1 ccagcgtgaa gatgtcgccg tcctcggtga cgtagcgggc gatcggcggg gcggaggctt
       61 ccagcccatt gacaggatgg tggcccaaca gcttgtcgcg caggctcgcc acgggcccgg
      121 ccagggccgg ggcgggcagg ccgagcgaga gacacagcac ggccgcgagg agcgccgccg
      181 aactcgtcct tgaagaagct cgtggctcgc ccgtcatgac accttaggac atgccgaggc
      241 ggtgtggcgc tttttggacc ggggcagggc cgtcacggga ccttaacgcc cttagcccac
      301 caggtactgg ccgccgttca gcgacagtgt cgttccggtc acatatccag cccgttcgcc
      361 ggccaggaag gcgaccatgt cggcgatctc gtcgccgcgg ccgagccgtc ccaccggaat
      421 ctggccgatg atgccctcca gaaccttctc cggcaccgcc tgcaccatct cggtgtcgat
      481 gtagccgggc gcgatgcaat tcacggtgac gcccttcttg gcgttctcca gcgcaagcgc
      541 cttggtgaag ccgatcatcc cggccttggc ggcggaatag ttggtctggc cgacctggcc
      601 cttctggccg ttgatcgagg agatgttgat gatccggccc caggagcggt cgcgcatgcc
      661 ctcgatcacc tggcgggtca tgttgaagag gctatccata ttgacccgga tcacctcgct
      721 ccactgctcg gagttcatcc ggtggaacac cccgtcgcgg gtgatgccgg cattgttgac
      781 caggatgtcg atgggaccca gttcggcctc gacggcggcc accgcgtgct ggcagtcggc
      841 gaagttgccg acattgccct tgatgaccat ggccccggtt tcgcgcttca gcgcctcggc
      901 ggcggcctca ttgccggaat agcccgccgc gaccttgaac ccgtcggcgg tcagcctctc
      961 gacgatcgct cgcccaatgc cacgggttcc acccgtgacc agcgccaccc tggccatgcg
     1021 ttcgctctcc ctaggacggg cgccggttga tccgacgctc ctcgaaatca gatcagactt
     1081 tttcgacgca catggccacg cccatgccac caccgacgca cagcgtggcg aggcccttgg
     1141 ttgcgtccgt gcggctcatc tcgtgcaaca gggtggtcag gatccgcgcg ccggacgcgc
     1201 cgatcgggtg gccgatggcg atggccccgc cgttgacgtt caccttggcc ggatcgaggc
     1261 cgaggtctcg caccacgcag atcgactgcg ccgcgaaggc ctcgttggat tcgatcaggt
     1321 cgaggtcggc gaccgaccag ccggcccgct ccagcgcctt gcggctggcg ggaatggggc
     1381 cagtgcccat gatttccggg tcgacgcctg cgtgggccca cgacgcgatg cgcgccagcg
     1441 gcttcaggcc ccgcttctgg gcctcctcgg ccgtcatcag caccagggcc gcggcgccgt
     1501 cattgaggcc cgacgcgttg gcggccgtga cggtgccgtc cttggtgaag gcgggccgca
     1561 ggcccgagat gctttccagc gtcgtgccgg cgcggatgaa ctcgtcctgg tcgacaacga
     1621 tgtcaccctt ccgacccttg atcgtcaccg gcgcgatctc gctggcgaac cggccggact
     1681 tctgcgcggc ctcggccttg ttttgcgagc cgacggcgaa cttgtcctgg tcctcgcggg
     1741 taatctgcca gcgggcggcg atgttctcgg cggtctggcc catgtggtag ccgtggaagg
     1801 cgtcccacag gccgtccttg atcatggtgt cgacgaaggc caggtcgccc atcttctggc
     1861 cattgcgcag gttctgggcg tgcggcgact ggctcatgct ctcctggccg ccggcgatga
     1921 cgatcgcggc cgagccgtcc ttgatctgct gggcgcccag cgccacggcg cgcaggcccg
     1981 agccgcagag ctggttcagg ctccaggcgg ggctttcgat gggaattccg gcgttgaccg
     2041 cggcctggcg ggcggggccc tggccggcgc cggcctgcag cacctggccc aggaccacct
     2101 catcgacgtc cgacagctgg atcccggcgc gttcgaccgc cgccaggatg gcgaccttgc
     2161 cgagttcgtg ggccgggagg ctggacagcg cgccgttgaa agagccgacg gctgtgcggg
     2221 cggcggagac gatgacgatg tcgctcatgg cgggggttcc ttgacgtcgt tggatgcggc
     2281 cctcccccat ctattgggag cgctcgcgtt ttccgcaagt cctgcatcat ttggggccga
     2341 ttgccattcc gctcgcatcc gcgatactgc agtgcagaaa cagtgggttc gcggcctttc
     2401 ctaggctcgc gacccggtaa aaggatttgg gatggccgac acccaggaga ccgccgcccc
     2461 aggcgagcgc gtgatcatca agaagtacgc caaccggcgg ctctacaaca ccgcctcctc
     2521 cagctacgtc accctcgaac acctctccga gatggtgaag cagaacatcg atttcgtggt
     2581 ctatgacgcc aagaccaacg aggacatcac ccgctccgtc ctgacccaga tcatcttcga
     2641 ggaggagagc cagcagggcc agagcctgct gccaatccag ttcctgcgtc agctgatcgg
     2701 cttctacggc aactccatgc aggccttcct gccctcctac ctggaactgt cgctggccag
     2761 cttcacccag cagcaggagc ggatgcgcac ccagttcacc tcgctgagcc aggcgccggg
     2821 cgccacggtc ttcgacgagc aggtccgcca gaacctggcg ctgttcgacc gggccatgaa
     2881 gatgttctcg ccgttcgcct atgcgcccaa gtccgaggag ccggcgcccg ccgcgcccaa
     2941 ggccgagccc gccccggccc ccgccgacga cgccctcgtc gtgctccgca aacagatgga
     3001 agacatgcag gcgcagatcg agaaactggc cggcaaacgc tgacaactgg cccaagtcct
     3061 gcatagacta agcccgccat gaccctttcg atcgatccgg cacgcagatc tccaggtatc
     3121 cgccgct
//
LOCUS       DATAJL010000658         1609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_61600,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000658 DATAJL010000000
VERSION     DATAJL010000658.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61600"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..587
                     /locus_tag="VHN39_12615"
     CDS             <1..587
                     /locus_tag="VHN39_12615"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HEX2817235.1"
                     /translation="RRRPGWLGGRPAEPRGADAAALARWRTEGQPPPGLTPLQQAQWA
                     DVATWLPNDLLLKLDRCLMAHGLEGRTPFLDREVAAFAFPLPDKFKVQGRYGKWLLRK
                     WLEGVCPAAEPWARKQGFTVPVEAWIAPRAADIAARLGQVEAVRRVKPDAAQAFTGAA
                     EGVRWPLLFFAVWSRIHLEGASPAEALASVVGTV"
     gene            complement(584..>1609)
                     /locus_tag="VHN39_12620"
     CDS             complement(584..>1609)
                     /locus_tag="VHN39_12620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEX2817236.1"
                     /translation="LLHGGAAIDFPGALRRQWRPRRQEPRMIETRITELLGIEYPIVQ
                     APMGWIARAQLASAVSNAGGLGVIETSSGRLDEVREEVKKMKTLTDKPWGINVAQAFV
                     RDPDIVRFVADQGVKFVTTSAGDPNKYCEALKAEGLTVFHVVPSLAAAMKAIEAGVDG
                     LVVEGGEGGGFKNGRDVATMVLLPLVCSKVGVPVIAAGGITDGRTMAAAFALGAEGVQ
                     MGTRMVSSAESPVHQNWKDAILNAKETDTVFLNRFGPGPALRALRTEKTTAFEKTPPE
                     NIMGEFGHALDLYFGGDMEASIALSGQVAGRIDEVKPVAQIIKETVEEFEAVMAELGA
                     KYGKVPA"
BASE COUNT          216 a          602 c          543 g          248 t
ORIGIN      
        1 ggcgtcggcg ccccggctgg ctgggcggac gcccggcgga gccccggggc gccgacgccg
       61 cggcgctggc ccgctggcgc acggaagggc aaccgccgcc cggcctcacg ccactgcagc
      121 aggcccagtg ggccgacgtc gccacctggc tgcccaacga cctgctcctc aagctcgacc
      181 gctgcctgat ggcccacggc ctggagggcc gcacgccgtt cctggaccgc gaagtcgccg
      241 ccttcgcctt cccgctgccg gacaaattca aggtccaggg ccgctacggc aaatggctgc
      301 tgcgcaagtg gttggaaggc gtctgccccg ccgccgagcc ctgggcgcgc aagcagggct
      361 tcactgtccc ggtcgaggcc tggatcgcgc cccgcgccgc cgacatcgcc gcccgcctgg
      421 gtcaggtcga ggctgtccgc cgcgtgaagc ccgacgcggc ccaggccttc accggcgccg
      481 ccgagggcgt ccgctggccc ctgctcttct tcgccgtctg gtcccgcatc cacctggagg
      541 gcgcgagccc cgccgaggcg ctcgcgagcg tggtggggac tgtctaggcc gggaccttcc
      601 cgtacttcgc ccccagctcc gccatcaccg cctcgaactc ctcgacggtc tccttgatga
      661 tctgggccac tggcttgacc tcgtcgatcc gccccgcgac ctggcccgac agcgcgatcg
      721 aggcctccat gtcgccgccg aagtagaggt ccagcgcatg tccgaactcg cccatgatgt
      781 tctcgggcgg ggtcttctcg aaggccgtgg tcttctcggt gcgcaacgcg cggagcgccg
      841 ggccaggacc gaagcggttg aggaagaccg tgtcggtctc cttggcgttc aggatcgcgt
      901 ccttccagtt ctggtgcacc gggctctcgg ccgaggagac catgcgcgtg cccatctgca
      961 cgccctcggc gccgagcgcg aaggccgcgg ccatggtgcg cccgtcggtg atgccgcccg
     1021 ccgcgatcac cggcacgccc accttcgaac agaccagggg cagcaggacc atggtcgcca
     1081 cgtcgcggcc gttcttgaag ccgccgccct cgccgccctc gaccaccagg ccgtcgactc
     1141 ccgcctcgat ggccttcatg gccgcggcca gcgacgggac cacgtgaaac accgtcaggc
     1201 cctcggcctt cagcgcctcg cagtacttgt tcgggtcgcc ggccgaggtg gtgacgaact
     1261 tgaccccctg gtcggccacg aacctgacga tgtccgggtc gcgcacgaag gcctgggcga
     1321 cattgatgcc ccaaggcttg tcggtgagcg tcttcatctt cttgacctcc tcgcgcacct
     1381 cgtcgaggcg gccggaggag gtttcgatga caccgaggcc gccggcgttg gagacggccg
     1441 aggccagctg cgcccgggcg atccagccca tcggggcctg gacaatcggg tattcgatcc
     1501 cgagcagctc ggtgatgcgg gtctcgatca tgcggggttc ctggcggcga ggccgccatt
     1561 ggcgacgcag ggcgccgggg aagtcaatcg ctgctccacc gtgtagcag
//
LOCUS       DATAJL010000659         4447 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_61611,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000659 DATAJL010000000
VERSION     DATAJL010000659.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4447
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61611"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..554
                     /locus_tag="VHN39_12625"
     CDS             <1..554
                     /locus_tag="VHN39_12625"
                     /inference="COORDINATES: protein motif:HMM:NF014906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator
                     C-terminal domain-containing protein"
                     /protein_id="HEX2817237.1"
                     /translation="VPSKAELVDLMLDRVAGEMGEPDPAGGDWRQQLTLLCRQRWATA
                     QRHPWIMHMGRRRPPLGPNVLARVEAMLRAIDGLGLSEMEMDQLISLVGDYVRGAVRA
                     AIDAREIEQQTGMTDEQWWSMNTPLLEGLVDPARYPTTVRIGEAYKSGRMAPPDHERN
                     FEFGLQRVLDGVEAFIAGRRGAT"
     gene            614..2266
                     /locus_tag="VHN39_12630"
     CDS             614..2266
                     /locus_tag="VHN39_12630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518578.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HEX2817238.1"
                     /translation="MKHLFLSAVAACALSSSAFAADVKIDPALLSEHIKVLSSDAFEG
                     RGPATPGEVKSVAYITKEFKAAGLQPGGDKTKAGRAWTQNVPLAEFDIKGPVAFSVTA
                     GGKTQAWKQGVEVAIRAPQTGVNHIDVRNAPVVFIGYGVKAPERNWDDFKGVDLKGKI
                     ALVLVNDPDYETGKGDFGGKAMTYYGRWTYKYEEAARQGAIGFIVIHETGPASYGWNT
                     VKNSNTNAVFDIIRKDPSKVHAPIEAWIQRDPTVALFKSAGLDFEALKKEAQTRAFKP
                     VTLSGVTVSTAFAVDAKKVISHNVVGVLPGTKHPGERIIYTAHWDHLGVGLPDARGDR
                     IYNGAVDNASGVSGLIELGRAFAKAPRTERTMQFMAVTAEEKGLLGSEYYATTPLYPL
                     ATTVANINMDGASVAGPARDVSTSGDGGLTLQDDLIRVAKAHGRYFTPDPRPESGGFF
                     RSDHFSFAKQGLPAISFKSGQDLVNGGVAAGKAAGEAYTRDKYHQPADEFDPNWDLTG
                     MAQELAIVYDLGRDLANSREWPEWKAGSEFKAARDKTAAMRK"
     gene            2271..3074
                     /locus_tag="VHN39_12635"
     CDS             2271..3074
                     /locus_tag="VHN39_12635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX2817239.1"
                     /translation="MASGKIRAGIGGWTFEPWRGVFYPPGLKQADELSYAASKLTAIE
                     INGTYYSSFKPDSWAKWRAATPEGFKFAVKASRFCTNRKVLAEMGESMGRFLNQGLSE
                     LGDRLGPILWQFANTKKFDPDDFEGFLKLLPATQDGLPLAHVLEVRHASFVDPAFVAL
                     ARKYGATVCLADHSSYPMIPDVTGDLVYARLQTGSDDVETAYSTADLDLWAGRLKTYA
                     EGGLPADLPAADPANPAAGTPRDVYAFVIHEGKVRAPAAAMAIIERVGD"
     gene            3145..4065
                     /locus_tag="VHN39_12640"
     CDS             3145..4065
                     /locus_tag="VHN39_12640"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2817240.1"
                     /translation="MAELSLDDLMFRPKLMAGQRILITGGGTGLGKVMAEACLILGAE
                     VYICGRRGGVVEAAAKDLTDTHGGKCVGLACDIRVPEAIADMVDSVWADGGALTGLVN
                     NAAGNFISRTEDLSARGFDAISNIVFRGSFFVSLECGKRWLAEGKHASVVSILTTWVW
                     NGGPFTVPSAMSKAGLNVMTQSLAVEWGNRGIRFNAIAPGPFPTEGAWARLNPGSAEA
                     GGAAPPPPADPTIPLNRNGEMRELANLAVYLLDPGSAYVNGQTIAIDGGSHLRGGGFN
                     RLAEWGDAEWEAARNSIRSANEKDRAQRTV"
     gene            4094..>4447
                     /locus_tag="VHN39_12645"
     CDS             4094..>4447
                     /locus_tag="VHN39_12645"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024967.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2817241.1"
                     /translation="MSDGYDFTSDWFSHLADIWREVLRTYPPSRILEIGAYEGRSACF
                     VIEACAAQRPIELHCVDTWTGGVEHDPDAMPAVEQRFDANIARACAAAAHPVSFHKHK
                     MTSTAAMVGLLAAAHA"
BASE COUNT          753 a         1580 c         1460 g          654 t
ORIGIN      
        1 atgtgccgtc caaggccgag ctggtggacc tgatgctcga ccgggtggcc ggcgagatgg
       61 gcgaacccga ccccgccggc ggcgactggc gccagcaact gacgctgctt tgccgccagc
      121 gctgggccac ggcgcagcgc catccctgga tcatgcacat gggccgtcgg cgcccgccgc
      181 tgggtcccaa tgtcctggcc cgggtcgagg ccatgctgcg cgccatcgac ggcctgggcc
      241 tcagcgaaat ggaaatggac cagctcatct cgctggtcgg cgactatgtg cgcggcgcgg
      301 tgcgcgcggc catcgacgcc cgggaaatcg agcagcagac cggcatgacc gacgaacagt
      361 ggtggtcgat gaacacaccc ctgctggaag gcctggtgga tccggcgcgc tacccgacca
      421 ccgtcaggat cggcgaggcc tataagtccg gccgcatggc gccgcccgac cacgagcgga
      481 acttcgagtt cggcctgcag cgggtgctcg acggcgtcga ggccttcatc gccggacggc
      541 gcggcgcgac ctagccgccg gcgatcggcg ccgctagggt cggcgcaact tcctccccca
      601 ttccgagtga tcgatgaaac accttttcct gagcgccgtg gctgcctgcg ctctttccag
      661 ctccgccttc gccgcagacg tgaagatcga cccggccctg ctctccgagc acatcaaggt
      721 gctctcgtcc gacgccttcg agggccgcgg gcccgccacg ccgggcgagg tgaagtcggt
      781 cgcctacatc accaaggagt tcaaggccgc gggcctgcag cccggcgggg acaagaccaa
      841 ggccggccgc gcctggaccc agaacgtgcc gctcgccgag ttcgacatca aaggcccggt
      901 ggccttcagc gtgaccgccg gcggcaagac ccaggcctgg aaacagggcg tcgaggtcgc
      961 catccgcgcg ccgcagaccg gggtcaacca catcgatgtc agaaacgccc cggtggtctt
     1021 catcggctat ggcgtgaaag ctccggagag aaattgggac gacttcaagg gcgtcgacct
     1081 gaagggcaag atcgccctcg tcctggtcaa cgaccccgac tacgaaacgg ggaaaggcga
     1141 ctttggcggc aaggccatga cctactacgg ccgctggaca tacaagtacg aggaggccgc
     1201 gcgccagggc gccatcggct tcatcgtgat ccacgagacc ggcccggctt cttacggctg
     1261 gaacaccgtc aagaactcca acaccaacgc ggtcttcgac atcatccgca aggacccctc
     1321 caaggtccac gctcccatcg aggcctggat ccagcgcgat ccgaccgtcg ccctcttcaa
     1381 gtccgcgggc ctggatttcg aggcgctgaa gaaggaggcg cagacccggg cgttcaagcc
     1441 ggtgacgctg tccggcgtga cggtctccac cgccttcgcc gtcgacgcca agaaggtgat
     1501 ctcgcacaac gtcgtgggcg tcctgcccgg gaccaagcat ccgggcgagc ggatcatcta
     1561 caccgcccac tgggaccacc ttggcgtcgg cctgcccgac gccaggggag accggatcta
     1621 caacggcgcc gtcgacaacg cctcgggcgt ctccggcctg atcgagcttg gccgcgcgtt
     1681 cgccaaggcg ccgcgcacgg agcggacgat gcagttcatg gcggtgacgg cggaggagaa
     1741 aggcctgctg ggctcggagt actacgccac cacgccgctc tatccgctgg ccaccacggt
     1801 cgccaacatc aacatggacg gcgcctcggt ggccgggccg gccagggacg tctccacctc
     1861 cggcgacggc gggctgaccc tgcaggacga cctgatccgg gtcgccaagg cgcacggccg
     1921 ctatttcacg ccggacccca ggcccgagtc cggcggcttc ttccgttccg accacttctc
     1981 cttcgccaag cagggcctgc cggcaatctc cttcaaatcc ggtcaggacc tggtcaacgg
     2041 cggcgtcgcg gccggcaagg cggcgggcga ggcctacacg cgcgacaaat accatcagcc
     2101 cgccgacgag ttcgatccca actgggacct caccggcatg gcccaggaac tggccatcgt
     2161 ctacgacctc ggccgcgacc tcgccaactc ccgcgagtgg ccggagtgga aggcgggctc
     2221 ggagttcaag gcggcgcggg acaagaccgc agcgatgcgg aaataggccg atggcgtccg
     2281 ggaaaatccg cgccgggatc ggcggctgga ccttcgagcc gtggcgcggg gtcttctatc
     2341 cgccgggcct gaagcaagcc gacgagctca gctacgccgc gtcgaaactc accgccatcg
     2401 agatcaacgg cacctactac tccagcttca agccggacag ctgggccaag tggcgggcgg
     2461 cgacgccgga aggcttcaag ttcgcggtca aggcctcgcg cttctgcacc aaccgcaagg
     2521 tgctggccga gatgggcgag agcatgggca ggttcctgaa ccagggcctt tccgaactcg
     2581 gcgaccgcct gggtccgatc ctgtggcagt tcgccaacac caagaagttc gatcccgacg
     2641 atttcgaggg tttcctgaag ctgctgccgg cgacgcagga cggcctgccg ctggcccacg
     2701 tccttgaggt gcgccacgcg agcttcgtcg acccggcctt cgtggcgctg gcccgcaagt
     2761 atggcgcgac cgtctgcctc gccgatcact ctagttatcc gatgatcccc gacgtcactg
     2821 gcgatcttgt ctacgcccgc ctgcagaccg ggtcagacga tgtcgagacc gcctattcga
     2881 ccgccgatct ggacctgtgg gcgggccggc tgaaaaccta tgccgagggc ggcttgcccg
     2941 ccgacctgcc ggccgccgac cccgcgaacc cggcggccgg gacgccccgc gacgtctacg
     3001 ccttcgtcat ccacgagggg aaggtccgcg cgcccgcggc cgcaatggcg atcatcgagc
     3061 gcgtgggaga ctgacgccga ccgcttgacc tccgccgcgt cagggccgcc gatgtggccc
     3121 aacgataaaa gcggaggacc tgcgatggcc gaactttccc tcgacgacct gatgttccgc
     3181 cccaagctga tggccgggca acgcatcctg atcaccggcg gcggcaccgg ccttggcaag
     3241 gtgatggccg aggcctgcct gatcctgggg gcggaggtct atatctgcgg ccggcgtggc
     3301 ggcgtggtcg aggccgcggc caaggatctc acggacaccc atggcggcaa atgcgtgggc
     3361 ctggcctgcg acatccgcgt gcccgaagcg atcgcggata tggttgactc ggtctgggct
     3421 gacggcgggg cgctcaccgg cctggtcaac aacgccgccg gcaactttat cagccgcacc
     3481 gaggacctct cggcccgcgg cttcgacgcc atctccaaca tcgtcttccg cggctctttc
     3541 ttcgtctcgc tcgagtgcgg caagcgctgg ctggccgagg gcaagcacgc ctcggtggtc
     3601 tcgatcctga ccacctgggt ctggaacggc gggcccttca cggtgccttc ggccatgtcc
     3661 aaggcgggcc tcaacgtcat gacccagtcg ctggccgtgg agtggggcaa ccgcggcatc
     3721 cgtttcaacg ccatcgcgcc ggggcccttc cccaccgaag gcgcctgggc gcggctgaac
     3781 cccggcagcg ccgaggccgg cggcgccgcc ccgccgccgc ccgccgatcc gaccatcccg
     3841 ctgaaccgca acggcgagat gcgcgagctg gccaacctgg ccgtctatct gctcgatccg
     3901 ggctcggcct atgtgaacgg ccagaccatc gccatcgacg gcggctcgca cctgcgcggc
     3961 ggcggcttca accgcctcgc cgaatggggc gacgccgaat gggaggccgc gcgcaattcc
     4021 atccgctccg ccaacgagaa ggaccgggcg cagaggacgg tttagatcgg ccccgacggg
     4081 aggatctccg accttgagcg acggctacga cttcaccagc gactggttca gccacctcgc
     4141 ggacatctgg cgcgaggttc tgaggaccta tccgccgtcg cgcatcctgg agatcggcgc
     4201 ctacgagggc cgttcggcct gcttcgtgat cgaggcctgc gccgcccagc gaccgatcga
     4261 gctgcactgc gtggacacct ggaccggcgg cgtcgagcac gacccggacg ccatgcccgc
     4321 ggtcgaacag cgcttcgacg cgaacattgc ccgggcatgc gcggccgccg cccatcctgt
     4381 gagcttccac aagcacaaga tgacctcgac cgccgcgatg gtcggactgc tggcggccgc
     4441 gcatgcc
//
LOCUS       DATAJL010000660         1577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_50481,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000660 DATAJL010000000
VERSION     DATAJL010000660.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50481"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1176
                     /locus_tag="VHN39_12650"
     CDS             <1..1176
                     /locus_tag="VHN39_12650"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2817242.1"
                     /translation="AFEAAGGLKGAEAEFARRKPAAAPAFHAPGPVFIPIDPPPGAVT
                     GHGADAFGASLAPLMKKDVATPFGPRQLALGVYIPAGLAPAGPGAPGPAVRMWTNGRP
                     NGPLVELVRQELSQALRVQALQASGVNMAALANIQAINAPISLAEASAGSGRERMMLR
                     SALPLALAYLLLLSLMMSGSWMLQGLIEERSNKLLESVLACITPDELLYGKLAGVVAV
                     GLVMITAWIAFAVTAAFSVQGVVADFVRPALSSISSPWIVVALAYYFLAGYLAISMLF
                     LAVGAVSDSLRDAQAYLTPMILVLTIPFVAIATSVLQNPDGPLPRIMSWIPIYAPFAM
                     MARLGSGVAAYEVIGSGVLLAAFIALEFVLLSRIFRSSLLQAGQSLGLKTLMRRAPA"
     gene            complement(1173..>1577)
                     /locus_tag="VHN39_12655"
     CDS             complement(1173..>1577)
                     /locus_tag="VHN39_12655"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX2817243.1"
                     /translation="HYDDVVAEVAAFLAERAETAMATGVARNRIWLDPGVGFGKHMIR
                     HNLPLLAGLDRIVALGFPVLLGVSRKSFISAVDEGGKGAGQRPPLERLGGSIAGALAG
                     AAAGVAAVRVHDVRETVQALRVWQAIAAGRPV"
BASE COUNT          207 a          559 c          547 g          264 t
ORIGIN      
        1 gccttcgagg cggcgggtgg gttgaaaggc gccgaggccg agttcgcgcg ccgcaaaccc
       61 gccgccgcgc cggccttcca tgcgcccggc ccggtcttca tccccatcga cccgccacca
      121 ggcgcggtga caggccatgg cgctgacgcg ttcggcgcct cgctggctcc gctgatgaag
      181 aaggacgtgg cgacgccgtt cgggccccgg caactggcgc tgggcgtcta catccccgcg
      241 ggtctggccc cggccggtcc cggcgcccct gggcccgcgg tgcgcatgtg gaccaacgga
      301 cggcccaacg ggccgctggt cgagctggtc cgtcaggaac tgagccaggc gctgcgcgtc
      361 caggccctgc aggcgagcgg cgtcaacatg gcggctctgg ccaatatcca ggcgatcaac
      421 gcgccgatct ccctggccga ggcctcggcc gggtccgggc gcgaacggat gatgctgcgc
      481 tcggccttgc cgctggcgct ggcctacctc ctgctgctct cgctgatgat gtccgggtcg
      541 tggatgctgc aggggctgat cgaggagcgg tccaacaagc tcctggagtc ggtgctggcg
      601 tgcatcaccc cggacgagtt gctctacggc aagctggccg gcgtcgtggc ggtgggactg
      661 gtgatgatca ccgcctggat cgccttcgcg gtcacggccg ccttttccgt ccagggcgtg
      721 gtggccgact tcgtgcggcc ggcgctgagc tcgatctcct cgccctggat cgtggtggcg
      781 ctggcctact atttcctggc cgggtacctg gcgatttcca tgctgttcct ggctgtcggc
      841 gccgtcagcg acagccttcg cgacgcccag gcctacctga cgccgatgat cctggtgctg
      901 accatcccct tcgtggcgat cgccacctcc gtgctgcaga accctgacgg gcccctgccg
      961 cggatcatgt cgtggatccc gatctatgcc cccttcgcga tgatggcgcg gctgggcagc
     1021 ggcgtcgcgg cctacgaggt gatcggctcg ggcgtgctgc tggcggcgtt catcgcgctg
     1081 gagttcgtcc tcctgagccg tatcttccgc tccagcctgt tgcaggccgg gcaatccctg
     1141 ggcctgaaga ccctgatgcg gcgcgcgcca gcctagacag gccgcccggc ggcgatggct
     1201 tgccagaccc ggagcgcctg gaccgtctcg cggacatcgt ggactcgcac ggcggcgacg
     1261 ccggccgcgg cgcccgcgag cgcgccggcg atggagccgc ccaatctttc gagagggggc
     1321 ctctgaccgg cgcccttgcc gccctcatcg accgcgctga tgaagctctt gcggctgacg
     1381 cccagcagga ccgggaagcc cagagccacg atccggtcca aacccgccaa caggggcagg
     1441 ttgtggcgga tcatgtgctt gccgaagccg acaccgggat cgagccagat acggttccgc
     1501 gcaacgccgg tggccatggc agtctcggcg cgttcggcca ggaacgcggc cacttcagca
     1561 accacgtcat cgtagtg
//
LOCUS       DATAJL010000661         2257 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_11748,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000661 DATAJL010000000
VERSION     DATAJL010000661.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11748"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            176..799
                     /locus_tag="VHN39_12660"
     CDS             176..799
                     /locus_tag="VHN39_12660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEX2817244.1"
                     /translation="MRTLAALLVIALIWAAGLLAFAERVQESTPQAEPAVADGIVALT
                     GANSNERIAAAVQLLAERRGRRVLVSGVNRDVSREQLRIASGSVRRLYDCCVDLGFTA
                     ADTVGNARETAEWARAMRYQRLTIVTSDYHMPRAMLELRAVLRPPTTTLQAYAVPTAA
                     LKSRHWWRSPGAVRLMVVEYSKYLAILGREAVLGLGPRAGSVAPQKA"
     gene            802..1509
                     /locus_tag="VHN39_12665"
     CDS             802..1509
                     /locus_tag="VHN39_12665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEX2817245.1"
                     /translation="MLAIRSITFVILFYVWSLFWVLLISPLCLGPRLWMVRSWRIWSL
                     GIFFLLRTICGIRVELRGQQYIPRDRGLIAPKHQCMLDVFAQFAWLPDSCFVTKKELM
                     WIPFLGWYAYKGRMIVVDRSAQAAALRKMVADAQDRFKNERQVVIFPEGTRGPPGVPG
                     DYKPGIAALYRELEVQVTPMATNAGVHWPAHGFLRHPGTIVYEYLPPIPPGLKRAEFM
                     RILQERIETASMALLPL"
     gene            complement(1513..2034)
                     /locus_tag="VHN39_12670"
     CDS             complement(1513..2034)
                     /locus_tag="VHN39_12670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HEX2817246.1"
                     /translation="MSDELWVFGYGSLMWRPGFPFAERVAATLQGRRRAFCIYSVHHR
                     GTYERPGLVLGLAPGGSVRGMAYRIAAKDWEEVYAYLLEREQPTETYIEARRPVRLAD
                     GRRVEALVFLSDVHHPQWAGALSLARQAELISGATGLSGRNTDYLRDLVQHLGQEGIR
                     DRSMETLLGLVEG"
     gene            2063..>2257
                     /locus_tag="VHN39_12675"
     CDS             2063..>2257
                     /locus_tag="VHN39_12675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817247.1"
                     /translation="MSLPDTTPPRKLRRLGLWLPFVALGLLIVAWSVAWVWARGQTAQ
                     RMDAAVQALGKAGYQITWKER"
BASE COUNT          323 a          843 c          744 g          347 t
ORIGIN      
        1 ccgcggcggc gaccagggcg gccagcagcg ggcatgggat cacggccagc aggtcgctcc
       61 aggccagcgg cagggccggg gtcagcccct cgccgccgcc ggcgatcctg aggcccgtgc
      121 ccagcgccgc cgcggcggct cagtacaccg ccatgaagct gatccgggac atgcagtgag
      181 gacgctcgcg gccctcttgg tgatcgcgct catctgggcg gcgggtctct tggctttcgc
      241 cgaacgggtc caggagtcga cgccgcaggc cgagcccgcc gtcgccgacg gcatcgtcgc
      301 gctcaccggc gccaactcca acgagcgcat cgccgcggcc gtccagctgc tggccgagcg
      361 cagggggcgc cgcgtgctgg tctccggcgt caaccgcgac gtcagccgcg agcagctgcg
      421 gatcgcctcc ggctccgtgc gccgcctcta cgactgctgc gtggacctgg gcttcaccgc
      481 cgctgacacc gtgggcaatg cgcgcgagac cgccgagtgg gccagggcca tgcgctacca
      541 gcgcctgacc atcgtcacct cggactacca catgccccgc gccatgcttg agctgcgggc
      601 cgtgctcagg cctccgacca ccacgctgca ggcctacgcc gtccccaccg cggccctgaa
      661 gagccgccac tggtggcgct cgcccggcgc tgtgcgcttg atggtggtgg agtattccaa
      721 gtatctggcg atcctcggcc gcgaggcggt gctggggctg ggcccccgcg caggttccgt
      781 ggcgccgcag aaggcctgac cgtgcttgcc atccgctcca tcaccttcgt gatcctgttc
      841 tacgtctggt cgctgttctg ggtgctgctg atctcgcccc tgtgcctggg gccgaggctg
      901 tggatggtgc ggtcgtggcg catctggtcg ctgggcatct tctttctgct gcgtacgatc
      961 tgcggcattc gggtggagct tcgcggccag caatacatcc ctagggaccg cggcctgatc
     1021 gcgccgaagc accagtgcat gctggatgtc ttcgcccagt tcgcctggct gccggacagc
     1081 tgcttcgtca ccaagaagga gctgatgtgg atcccgttcc tgggttggta cgcctacaag
     1141 ggccggatga tcgtcgtcga ccgctcagcc caggccgcgg cgctgcgcaa gatggtcgcc
     1201 gacgcccagg acaggttcaa gaacgagcgc caggtggtga tcttcccgga aggcacccgt
     1261 gggccacccg gcgttcccgg cgactacaag cccggcatcg ccgccctcta ccgcgaactc
     1321 gaggtgcagg tgacgcccat ggccaccaac gccggggtcc actggccggc ccacggcttc
     1381 ctgcgccacc ccgggaccat cgtctacgag tacctgccgc ccatcccgcc gggcctcaag
     1441 cgcgccgagt tcatgcgcat cctgcaggaa cgcatcgaga ccgcctccat ggccctgcta
     1501 ccgctctaag catcatccct ccaccagccc cagcagcgtc tccatcgacc ggtcgcggat
     1561 gccctcctgg cccagatgct gcaccaggtc gcgcaggtag tcggtgttgc ggcccgacag
     1621 ccccgtggcg cccgagatca actcggcctg ccgcgccagg ctgagcgcgc cggcccactg
     1681 cgggtggtgc acgtcggaga ggaacaccag ggcctccacg cgccgcccgt cggccagccg
     1741 caccggcctg cgcgcctcga tgtaggtctc cgtcggctgc tcgcgctcca gcaggtaggc
     1801 gtagacctct tcccaatcct tggccgcgat ccggtaggcc atgccccgca cagagccgcc
     1861 cggggccagg cccagcacca ggcccggccg ctcataggtc ccgcggtggt ggacggaata
     1921 gatgcagaag gcccgccggc ggccctgcag ggtggcggcc acccgctcgg cgaacgggaa
     1981 gcctggccgc cacatcagcg agccgtagcc aaagacccaa agctcgtccg acatcccgcg
     2041 ccctacggct ataagacctc ccatgtctct gcccgatacg accccgcccc gcaaactccg
     2101 ccggcttggc ctgtggctgc ccttcgtcgc cctggggctg ctgatcgtcg cctggagcgt
     2161 cgcctgggtc tgggcgcgcg gccagacggc gcagcgcatg gacgccgccg tacaggcgct
     2221 gggcaaggcc ggttaccaga tcacctggaa agagcgg
//
LOCUS       DATAJL010000662         3029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95157,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000662 DATAJL010000000
VERSION     DATAJL010000662.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3029
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95157"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..897
                     /locus_tag="VHN39_12680"
     CDS             <1..897
                     /locus_tag="VHN39_12680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817248.1"
                     /translation="ASVTQLERPAQFKSLTLTEAEARTLEKGYEQAVAADAKPSDPTA
                     GAPTAGNDPGGYNNFWIDPGTKVGRIKGQLRSSWLVEPADGKLPYSAEGRRLFLAEVR
                     KISGAADDPEQRQVAERCLMGFGSTAGPPMLNVLYNNTYQIQQDRDHVVVLVEMDHDA
                     RIIRLTDRTHPPANVRQWMGDSFGWWEGDTLVVETTNFNPGEVLRPGIPTTIFVSKDA
                     KVTERFTRTSATQILYEFKVEDPTAYTRTWRGEMPLNVTKGPVYEYACHEGNYALPSI
                     LRGARRAEEAAGGKTPAPGGSQ"
     gene            complement(901..2706)
                     /gene="lepA"
                     /locus_tag="VHN39_12685"
     CDS             complement(901..2706)
                     /gene="lepA"
                     /locus_tag="VHN39_12685"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HEX2817249.1"
                     /translation="MTTPLSHIRNFAIVAHIDHGKSTLSDRLIQETGALTQREMTEQV
                     LDSMDIERERGITIKAQTVRLSYKADDGETYVLNLMDTPGHVDFAYEVSRSLAACEGS
                     ILVVDASQGVEAQTLANVYQAIDNNHEIVPVLNKIDLPAAEPERIRQQIEDVIGLDAS
                     DAILTSAKTGAGIHELLEAIVHRLPAPKGDINAPLKALLVDAWYDAYLGVVVLVRVID
                     GSLRKGQRVQMMQQGSTHLIDRIGVFNPKRTEVESLGPGEIGFITAQIKEVAQAAVGD
                     TITDEKRPATTALPGFRDVQPVVFCGLFPVDAADFEDLRAAIGRLRLNDASFSYEMET
                     SAALGFGFRCGFLGLLHLEIIQERLSREFDLDLIATAPSVIYKIGLIDGTEVELHNPA
                     DMPDVVRIDSIAEPWIRATIFTPDEYLGSVIKLCQDRRGAQRELSYVGSRALVVYDLP
                     LNEVVFDFYDRLKSVSKGYASFDYQMEDYRVGNLVKMTILVNSEPVDALSMLVHADRA
                     EARGRGMVEKMKELISPHMFQIPIQAAIGGRIIARETVRALRKDVTAKCYGGDMSRKR
                     KLLDKQKAGKKRMRQFGKVEIPQEAFIAALKMDAD"
BASE COUNT          493 a         1017 c         1021 g          498 t
ORIGIN      
        1 gcctcggtca cccagctcga acggccggcg caattcaagt cgctgaccct cactgaggcc
       61 gaggcccgca ccctggagaa gggctacgag caggcggtcg cggccgacgc caagccctcc
      121 gatccgacgg cgggcgcgcc cacggcgggg aacgatcccg gcggctacaa caatttctgg
      181 atcgatccgg ggaccaaggt cggccggatc aagggccagc tgcgcagttc ctggctggtg
      241 gagcctgccg acggcaagct gccctatagc gccgaaggcc ggcgcctgtt cctggccgag
      301 gtgcgcaaga tctccggcgc cgccgacgat ccggaacaac gccaggtggc cgagcgctgc
      361 ctgatgggct tcggctccac cgccgggccg ccgatgctga acgtgctcta caacaacacc
      421 tatcagatcc agcaggaccg ggaccacgtg gtcgtcctgg tggagatgga ccacgacgct
      481 aggatcatcc ggctgaccga ccgcacccat ccgccggcca atgttcgcca atggatgggc
      541 gacagcttcg gctggtggga aggcgacacc ctggtcgtcg agaccaccaa cttcaatccg
      601 ggcgaggtgc tgaggcccgg catcccgacg accatcttcg tctccaagga cgccaaggtg
      661 acggagcgtt tcacccgcac ctcggccacc caaattctct atgagttcaa ggtcgaggac
      721 ccgacagcct acaccaggac ctggcggggc gagatgccgc tcaacgtgac caaggggccg
      781 gtctacgaat atgcctgcca cgagggcaac tacgcgctgc cgtccatcct gcgcggcgcc
      841 cggcgggccg aggaggccgc cggcggcaag acccccgcgc cgggcggttc gcaatagcgc
      901 ctagtccgcg tccatcttca gggcggcgat gaaggcttcc tgcgggatct cgaccttgcc
      961 gaactggcgc atgcgctttt taccggcctt ctgcttgtcg agcagcttgc gcttgcggct
     1021 catgtcgccg ccgtagcact tggcggtgac gtccttgcgc agcgcccgca ccgtctcgcg
     1081 cgcgatgatc cggccgccga tcgccgcctg gatcgggatc tggaacatgt gcgggctgat
     1141 cagctccttc atcttctcga ccatgccgcg gcccctggcc tccgcgcggt cggcgtggac
     1201 cagcatggag agcgcgtcca ccggctcgga gttcaccagg atggtcatct tcaccaggtt
     1261 gccgacccgg tagtcctcca tctggtagtc gaaggaggcg tagcccttgg agacgctctt
     1321 cagccggtcg tagaagtcga agaccacctc gttgagcggc aggtcgtaga ccaccagcgc
     1381 ccgggagccg acgtagctca gctcgcgctg cgcgccgcgc cggtcctggc agagcttgat
     1441 caccgagccg agatattcgt ccggcgtgaa gatggtggcg cggatccacg gctcggcgat
     1501 gctgtcgatg cgcaccacgt ctggcatgtc ggcggggttg tgcaattcca cctccgtgcc
     1561 gtcgatcagg ccgatcttgt agatgacact gggcgcggtc gcgatcaggt cgaggtcgaa
     1621 ctcgcgggag aggcgctcct ggatgatctc caggtgcagg agccccagga acccgcagcg
     1681 gaagccgaag ccgagcgccg cggacgtctc catctcatag ctgaacgagg cgtcgttcag
     1741 gcgcaggcgg ccgatggcgg cgcgcaggtc ctcgaagtcg gcggcgtcca ccgggaacag
     1801 gccgcagaac accaccggct gcacgtcgcg gaagccgggg agcgcggtgg tggccgggcg
     1861 cttctcgtcg gtgatggtgt cgccgacggc ggcctgggcc acttccttga tctgggcggt
     1921 gatgaagccg atctcgccgg ggcccaggct ctcgacctcg gtgcgcttgg gattgaagac
     1981 cccgatgcgg tcgatcaggt gggtcgagcc ctgctgcatc atctgcaccc gctggccctt
     2041 gcgcagcgac ccgtcgatga cgcgcaccag caccaccacg cccaggtagg cgtcgtacca
     2101 ggcgtcgacc agcagcgcct tcagcggcgc gttgatgtcg cccttgggcg ccggcaggcg
     2161 gtggacgatg gcctccagca gttcgtggat gccggccccg gtcttggccg aggtcaggat
     2221 cgcgtccgag gcatccaggc cgatgacgtc ctcgatctgc tggcggatcc gctcgggctc
     2281 ggcggccggc aggtcgatct tgttcaggac cgggacgatc tcgtgattgt tgtcgatggc
     2341 ctggtagacg ttggccagcg tctgggcctc gacgccctgg ctggcgtcca ccaccaggat
     2401 cgagccctcg caggcggcga gcgagcggga gacctcatag gcgaagtcca cgtggcccgg
     2461 ggtgtccatc aggttcagga cataggtctc gccgtcgtcg gccttgtagg agagcctgac
     2521 ggtctgggcc ttgatggtga tcccgcgctc gcgctcgatg tccatgctgt cgagcacctg
     2581 ctcggtcatc tcgcgctggg tgagcgcgcc ggtctcctga atcagccggt cggagagcgt
     2641 cgacttgccg tggtcgatgt gggccacgat ggcgaagttg cggatgtggg aaagcggggt
     2701 ggtcatgttg cgcccgcgtc tagcacattc cctcgcaagt gcgagatgtc gcctcgcctc
     2761 aggccgcgtc cgcaaacgtg acggcgccga aacacggtta atcctgcgtt aaggtgacgt
     2821 aatccatcaa cagactgggc ggagctgaaa ttagacactc aaggaggcct gtgcgcccat
     2881 ggaccgtcga accctgatcg cttcgggcct gatcaccctg ggcgccgcgg gcctggccaa
     2941 ggcccagacc acccagctgc cgccggcccg gccgcgcgac gccgcgccgg aggcgccgcc
     3001 cccgcccaac accacgccca gctatccga
//
LOCUS       DATAJL010000663         2536 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_37765,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000663 DATAJL010000000
VERSION     DATAJL010000663.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2536)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2536)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2536
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37765"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(126..626)
                     /locus_tag="VHN39_12690"
     CDS             complement(126..626)
                     /locus_tag="VHN39_12690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF934 domain-containing protein"
                     /protein_id="HEX2817250.1"
                     /translation="MPTFIRLQDGGFSLAEDPFTNVGDEQGLPPGDVIISLTRFQAEG
                     EALLGEGRAVGVRLESHEEVEALAYDMPQLAVVALAFPKFGDGRAYSSARLLRERFGF
                     KGQLRAVGDVTREQAGQMVRCGFDAFEPADVSTLADWERATQRYRHVYQRSSDGRSPA
                     FAERGE"
     gene            complement(610..2265)
                     /locus_tag="VHN39_12695"
     CDS             complement(610..2265)
                     /locus_tag="VHN39_12695"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HEX2817251.1"
                     /translation="MYRYDSIDKDFLADRTAEFRGQVARRLAGELSEDQFKPLRLRNG
                     LYLQLHAYMLRIAVPYGSLNPTQMRKLAWIGRTYDKGYGHFTTRTNLQFHWIKLSDAP
                     DIMDHLASVDMHAIQTSGNCIRNVTADPYAGATAEEIDDPRVWAEAIRQWSTVHPEFN
                     WLPRKFKIAVTAAARDRTAAKTHDIGLNLKRARDGSLGFEVMVGGGLGRMPYIGQTIR
                     PFLPATRLLSYLEAILRVYNRHGRRDNIHKARIKVLVAALGREEFAAQVEAEWEKMGA
                     GADLPDTELARVRGAFAPKSFETLPAVSEAFEAAKLKTPAFARFARNNLKPHKVAGYT
                     IVEISLKAIGATPGDATCEQMEVVADLAERFGQDDIRVTHEQNLVLPHVKLDDAPAVW
                     SALAEAGIATPNMNLVSDIIACPGLDYCALANARAISVAQHIAEKFADPDRAELVGEL
                     KVKISGCINACGHHHVGHIGILGVDKKGEEFYQLTLGGSAAEDATVGQALGPALPYDK
                     VAEAVDTLVETYLRERLGGERFLDTFRRTGVAPFKEAVYADVH"
     gene            complement(2274..>2536)
                     /locus_tag="VHN39_12700"
     CDS             complement(2274..>2536)
                     /locus_tag="VHN39_12700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2849 domain-containing protein"
                     /protein_id="HEX2817252.1"
                     /translation="ADDPAGEAAEGHAKNQPTVVVEPYLIDLVDSGGLWAPQSYRERI
                     RALGPSNLPHGKQTEGGAAIEALLHAHGAARSTGRVDLIKRK"
BASE COUNT          362 a          844 c          905 g          425 t
ORIGIN      
        1 cgccagcttg tcgccgaagg tctcgacagc ggcttccagc accgtgcgcg ggtgcgcgtg
       61 gcgcagctcc gcgtccagac gcgcggccag cgtcaggtag cgatcgctcg tgtcgtaggc
      121 caagctcact ctccccgctc cgcgaaggcc ggcgagcggc cgtccgatga gcgttggtac
      181 acgtggcggt agcgctgggt ggccctctcc cagtctgcca gggtcgagac gtccgccggc
      241 tcgaaggcgt caaaaccgca gcggaccatc tggcccgcct gttcgcgggt cacgtcgccc
      301 acggcgcgca gctgcccttt aaatccgaac cgctcgcgca gaaggcgcgc ggaactgtag
      361 gcccggccgt cgccgaactt cgggaaggcc agcgccacca cggccagttg cggcatgtcg
      421 taggccaggg cctcgacctc ctcgtggctc tccagccgca cgccgaccgc gcggccctcg
      481 cccagcaggg cttcgccctc ggcctggaag cgggtcagcg aaatgatcac gtcgccgggg
      541 ggcaggcctt gctcgtctcc gacgttggtg aaggggtcct cggccagcga gaacccgccg
      601 tcctgaagcc taatgaacgt cggcatagac cgcctccttg aagggggcga cgccggtgcg
      661 ccggaaggtg tcgaggaacc gctcgccgcc caggcgttcg cgcagatagg tctcgaccag
      721 ggtgtccacc gcctcggcca ccttgtcgta gggaagcgcc ggaccgagcg cctggccgac
      781 cgtcgcatcc tcggccgccg atccgccgag ggtgagctgg tagaattcct cgcccttctt
      841 atcgacgccc aggatgccga tgtggcccac gtggtggtgg ccgcaggcgt tgatgcagcc
      901 cgagatcttg accttcagct cgcccaccag ttcggcccgg tcggggtcgg cgaacttctc
      961 ggcgatgtgc tgggccaccg agatcgcccg cgcattggcc agagcgcagt agtcgaggcc
     1021 cgggcaggcg atgatgtcgg agaccaggtt catgttgggt gtggcgatgc ccgcctcggc
     1081 gagtgcggac cagaccgcgg gcgcgtcgtc cagcttcaca tgcggcagga ccaggttctg
     1141 ctcgtgggtg acccggatgt cgtcctggcc gaagcgttcg gcgaggtcgg cgaccacctc
     1201 catctgctcg caggtcgcgt cgccgggggt ggcgccgatg gccttcagcg aaatctcgac
     1261 gatggtgtaa ccggcgacct tgtggggctt caggttattg cgcgcgaagc gggcgaaggc
     1321 gggggtcttc agcttggccg cctcgaaggc ctccgacacc gccggcaggg tctcgaaact
     1381 cttgggggcg aaggcgccgc ggacgcgggc gagctcggtg tccggcaggt cggcgccggc
     1441 ccccatcttc tcccactcgg cctcgacctg ggcggcgaat tcctcgcggc caagcgccgc
     1501 caccagcacc ttgatgcggg ccttgtggat gttgtcgcgc cggccgtggc gattgtagac
     1561 ccgaaggatc gcctccaggt acgagagcag ccgcgtggcc ggcaggaacg ggcgaatggt
     1621 ctggccgatg tagggcatcc gccccaggcc cccgccgacc atcacctcga agcccaagga
     1681 accgtcgcgg gcgcgcttga ggttcaggcc gatgtcgtgg gtcttggccg ccgtgcggtc
     1741 ccgggcggcc gccgtgaccg cgatcttgaa cttgcggggc agccagttga attccgggtg
     1801 cacggtggac cactggcgga tcgcctcggc ccagacccgc ggatcgtcga tttcttccgc
     1861 cgtcgcgccc gcataggggt cggcggtgac gttgcggatg caattcccgg acgtctggat
     1921 ggcatgcatg tcgacgctcg ccaggtggtc catgatgtcc ggcgcgtctg agagcttgat
     1981 ccagtggaac tgcaggttgg tgcgcgtggt gaagtggccg tagcccttgt cgtaggtgcg
     2041 gccgatccag gcgagcttgc gcatctgggt cgggttgagc gagccgtagg gcacggcgat
     2101 ccgcagcatg taggcgtgga gttgcagata gaggccgttc cgaagccgca gcggcttgaa
     2161 ctggtcctcg gagagctcgc ccgcgagcct gcgcgctacc tggccacgga actccgcggt
     2221 gcggtcggcc aggaaatcct tgtcgatgga atcgtaccgg tacatcgcgc cctctacttg
     2281 cgcttgatca ggtcgacgcg gcccgtggag cgggcggcgc cgtgggcatg cagcagggcc
     2341 tcgatggcgg ccccgccttc cgtctgcttg ccgtgcggaa gatttgacgg gccgagcgcg
     2401 cggatgcgct cgcggtagct ctgcggcgcc cagaggccgc cggagtccac caggtcgatc
     2461 agatagggct caaccaccac cgtcggctgg ttcttggcgt ggccctcagc ggcctcgccg
     2521 gccgggtcgt cggcct
//
LOCUS       DATAJL010000664         1614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_107961,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000664 DATAJL010000000
VERSION     DATAJL010000664.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1614
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107961"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VHN39_12705"
     CDS             <1..365
                     /locus_tag="VHN39_12705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817253.1"
                     /translation="ASRVAELWVVEGAELAREAAADRLVYEAAAGRFLGPSGPAAAPA
                     QADLVRFLTHPDLVPADAVALHCRGVRWSRAVGVWDAAAAAALTADTVGLSFVDEVWA
                     PGAGDLFRPVKTQGPVAA"
     gene            362..1579
                     /locus_tag="VHN39_12710"
     CDS             362..1579
                     /locus_tag="VHN39_12710"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF045194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX2817254.1"
                     /translation="MSLLGDARRLWRSVAPEPLRKLAGPALNTVLEAYVRSAARKPHG
                     ADTAKGPIKIVGYFAGSHGIAASARLAARAFEALGVPVERIDVTDAKLDWSGRLAEPV
                     SASAWIFHLNPPELLAALACLGPRRLIGPRYGYWAYELPRAPKRWLKDAALVDEVWAP
                     SRYTAEALAGAAAPVRVVPHPLFLEDYAKVVPAPRRKPFQGVSIFDFNSSLARKNPAG
                     AIEAWRRAFGGDLDCELTLKTQNGEAFREALAALRAAAPANVRIVDEVWPYADVQGLI
                     AGADVLVSLHRAEGFGLTPAEAMALGTPVLATAFSGVLDFMDAECVLLVPATQTPVDD
                     PQGIYRGRQTWAEPDLAAAADALVRLRQDPDLGRRLSEVARARVARQLSPQAWFTTLP
                     DPVKAAAMAAIRR"
BASE COUNT          194 a          631 c          559 g          230 t
ORIGIN      
        1 cggccagccg cgtcgccgag ctgtgggtgg tggaaggcgc ggaactggcc cgcgaggccg
       61 ccgccgaccg cctggtctat gaggccgccg ctggccggtt cctcggcccc tccgggcccg
      121 cggccgcgcc cgcccaggcc gacctcgtgc gcttcctgac ccatcctgat ctggtcccgg
      181 ccgatgccgt ggccctgcac tgccgcggcg tccgctggag ccgcgcggtg ggcgtctggg
      241 acgcggccgc ggccgcagcc ctcaccgccg acaccgtcgg cctgagcttt gtcgacgagg
      301 tctgggcgcc gggcgccggc gaccttttcc gcccggtgaa gacccaaggc cccgtggcgg
      361 catgagtctc ctgggcgacg cgcggcggct ctggcgatcg gtggcgcctg agcccctgcg
      421 caagctggca ggaccggccc tcaacacagt gcttgaagcc tacgtgcggt ccgccgcccg
      481 caagccccac ggcgcggaca ccgccaaggg cccgatcaag atcgtgggtt atttcgcggg
      541 ctcgcacggc atcgccgcct ccgcccggct ggcggcgcgg gccttcgagg ctctgggcgt
      601 ccccgtcgag cggatcgacg tcaccgacgc caagctggac tggagcggtc ggctcgccga
      661 gccggtctcc gccagcgcct ggatcttcca tctcaatccg ccggagctgc tggcggccct
      721 ggcctgcctg gggccccggc gactgatcgg cccgcgctac ggctactggg cctatgagct
      781 gccgcgcgcg cccaagcgct ggctgaagga cgcggccctg gtggacgagg tctgggcgcc
      841 cagccgctac accgccgagg cgctggccgg cgccgccgcg ccggtgcggg tcgtgcccca
      901 tccgctgttc ctcgaggact acgccaaggt cgtccccgcc ccgcgccgca agccgtttca
      961 gggcgtcagt atcttcgact tcaactcctc cctggcccgc aagaaccccg caggggccat
     1021 agaggcctgg cgccgtgcct tcggcggcga cctggactgc gaactgacgc tcaagaccca
     1081 gaacggcgag gccttccggg aagccctggc ggcgctccgg gccgcggccc ccgccaacgt
     1141 gcgcatcgtc gatgaggtct ggccctacgc ggacgtgcag ggcctgatcg ccggcgccga
     1201 cgtgctggtc tccctgcacc gggcagaggg gttcggcctg acgcccgcgg aggccatggc
     1261 gctcggaacc ccggtcctcg ccaccgcctt ctccggcgtg ttggatttca tggacgccga
     1321 atgcgtcctg ctggtcccgg ccacccagac accagtcgac gatccccagg gcatctatcg
     1381 ggggcgccag acctgggccg aacccgacct cgccgccgcc gccgacgcgc tcgtccgcct
     1441 gcgccaggac ccggacctcg gccgccgcct gagcgaggtc gcccgcgccc gcgtggcccg
     1501 ccagctctcg ccccaggcct ggttcaccac cctgcctgac ccggtgaagg ccgcggccat
     1561 ggcggcgatc aggcgctagt gtgctggatt tgaagttcgc cgcattcagg gcca
//
LOCUS       DATAJL010000665         1899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95171,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000665 DATAJL010000000
VERSION     DATAJL010000665.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95171"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..817
                     /locus_tag="VHN39_12715"
     CDS             <1..817
                     /locus_tag="VHN39_12715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817255.1"
                     /translation="ASELEADKSVISRWLNGSVQPSAHNLSRLSALIATRVEGFRTLD
                     WDRDLGGLAEIFGVDPDAIPAIRAARAPNGLPIAIWDHMLSMSAVRGKAYEGFFKSTR
                     PHPMSPGRYVHEYGMIRGDEIGLLRLTMGSAETVVDGWMIPLHGQLYSIAADVRSGTL
                     VFGIFNGLGASRVDVFDGLTLIPGFDKGRSPTATAMLCERIGDLTGDREADDRHFAEL
                     AAQNPLAPVGSVPDHIQAHLARDFGPSQVPLGGDWLLNMALSRSMTRGPEYDP"
     gene            complement(889..>1899)
                     /locus_tag="VHN39_12720"
     CDS             complement(889..>1899)
                     /locus_tag="VHN39_12720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817256.1"
                     /translation="GLTAMLEALSTGLVTGAAGIVLKPVRLRMIAVIAAAILVVLDLA
                     TTRTSGESVMVVRALAGLPEGILLWISIGFISRTVTPERWAAVLFTGMGLTQLSVATG
                     LSALVLPRFGADGGYVTVAVGAALAIPVALFLPRSLGAVAAAGAETSGAPPFRGWVAL
                     AGTLCMAASLTAVAVYVIPLARQAGLSVAVGRTAISVGLACQMAGGGLATLLAGRIRY
                     ITVFWVCAAVFLATWGAFAVHAPAWLFIAMTGLSGLAAFMAGPFLVPMTVEADPSRRA
                     AMQSGAVQLLAGAFGPLLASQAVTDHNVHGVLILAVVLQGVGLTVATRLHHTARAERI
                     AA"
BASE COUNT          331 a          664 c          650 g          254 t
ORIGIN      
        1 cgcctccgaa cttgaggcgg acaagtcggt catcagccgg tggctcaacg gcagcgtcca
       61 gccctcggct cacaacctat ctcgtctgtc cgccctcatc gcgacccgcg ttgagggctt
      121 ccgaaccctg gactgggacc gcgacctggg tggcctggca gagatattcg gggtcgatcc
      181 cgacgctatt ccggcgatcc gcgccgcccg cgcccccaat ggattgccca tcgcaatctg
      241 ggaccacatg ctcagcatgt ccgcggttcg cggcaaggcc tacgaggggt tcttcaagtc
      301 caccaggccg cacccgatga gccccggccg ctacgtccat gaatacggca tgatccgggg
      361 tgacgagatc ggcctgctgc gcctgaccat gggcagcgcg gaaaccgtgg tggatggctg
      421 gatgattccc ctgcacggcc agctctacag catcgccgcg gacgtccgca gcggcaccct
      481 ggtgttcgga atattcaatg gactgggagc ttcgcgtgtc gacgtgttcg atggcctgac
      541 cctgatcccg gggttcgaca aggggcgttc gccgacagcg accgccatgc tgtgcgagcg
      601 catcggcgat ctgaccggcg accgcgaggc cgacgaccgc catttcgccg aactggccgc
      661 acagaacccg ctggcgcccg tggggtccgt ccccgatcac atccaggcgc atctcgcgcg
      721 cgatttcgga ccgagccaag tgccgctggg cggcgactgg ctgctgaaca tggccctcag
      781 ccgctcgatg acccgcggtc cggaatacga tccgtgagcc gcttactggc gacgagatag
      841 ccaagggcta agcgccgccg cgagccccga tctccgatct ccgtccggct acgccgcgat
      901 ccgttctgcc cgcgcagtat gatgcagcct cgtggcgacc gtgaggccca caccctgcag
      961 caccacggcc aggatcagca cgccgtgcac attgtggtcg gtgacagcct gtgatgccag
     1021 cagcggcccg aacgcgccgg cgagcagctg gactgcgccg ctctgcatgg cggcgcgccg
     1081 ggaggggtcg gcttccacgg tcatcgggac gaggaaaggg ccggccatga aggcggcgag
     1141 gcccgaaagg ccggtcatgg cgatgaacag ccaggccggc gcgtggacag cgaaagcgcc
     1201 ccaggtggcc aggaagaccg ccgcgcaaac ccagaagacg gtgatgtagc gaatgcgccc
     1261 ggccaggagg gtggcgagcc caccgcccgc catctggcag gcgagcccga ccgagatggc
     1321 cgtccgccct accgcaacgc tgaggcccgc ctggcgcgcc aatgggatga cgtagaccgc
     1381 cacggcggtc agcgaagccg ccatgcatag ggtgccggcc agcgccaccc agccgcgaaa
     1441 tggcggcgcg cccgaagtct ctgcgccggc cgcggcgacg gcgcccaggc tacggggcag
     1501 gaagagcgcg acgggtatgg ccagcgccgc gccgaccgcg accgtcacat agccgccatc
     1561 ggcgccgaag cggggcaaca ccagggcgga gagccccgtg gcgacggaga gttgagtcag
     1621 gcccatgccg gtgaacagca ccgcggccca gcgctccggt gtcacggtgc gggagatgaa
     1681 gccgatggag atccagagca ggataccttc cggtagcccg gccagcgccc ggacgaccat
     1741 cacgctctcg ccactcgtcc gcgtggtggc gaggtccagg acgacgagta tggcggcggc
     1801 gatcaccgcg atcatgcgca gccggacggg cttgagcacg atgcccgccg cgccggtcac
     1861 caggcccgtg ctcagcgcct ccagcatggc ggtgaggcc
//
LOCUS       DATAJL010000666         3693 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_37834,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000666 DATAJL010000000
VERSION     DATAJL010000666.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3693)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3693)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3693
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37834"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2165)
                     /locus_tag="VHN39_12725"
     CDS             complement(<1..2165)
                     /locus_tag="VHN39_12725"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817257.1"
                     /translation="MSPAKALAALLPPGCGFELVDARSFRVVGRPLPAASDLRAGRAE
                     PDAAPARRLDELVVTAEKRPELLTRSASAVSVLSARDVDALGGKTFEDVASQVVGVAV
                     TNLGSGRNKIFVRGLSDGSFTGKTQSTVGLYLDDVPITYNAPDPDLRLADIDRVEVLR
                     GPQGTLYGSGSIGGIVRIVTARPDVSSVTGEVSVEGMLTQHGAPSSGLEATTNLPLAD
                     GRAAIRAVVYSDERGGYIDNPVLGLKDVNYSRRVGGRISGLADLPDGWTLEAGFAHQS
                     IATADSQYTQGTDGPLTRDASVREPHDNDFSEVGATASHAGGAADLKVSTAFIDHALD
                     TRYDATGAFLAAGGSRTAGAFDEDKHIKLWATEGLLSSNAPGPLRWLAGAFISYTDEM
                     DAAFLVRVKPTGEAARSIYRRRDELTEAAVYGEVAYDLTARITATVGARWFATGVDTR
                     LSDFDIAPAPLAPQHRRLTDTGVAPKLRLSYAATPDVVIYAQVQEGYRAGGFNIPAEA
                     GGATVERLSAQFKPDHLWNYEIGAGLPLFDHTLTLRGAVFHADWYGLQTDQRLASGLP
                     MTVNIGDGSNTGVEAEATWRPDDHLQVRANVLLEDPSITRAGDVFPARRDIGLPGVPR
                     AMGGADVRYRWRLGPFDAETSAQLAYVGRSYLTFDGGTGNAMGGYGSGRVAAALSRAA
                     WRATAYVDNVTDERGNTFAFGNPFSRARATQATPLRPRTV"
     gene            2483..3193
                     /locus_tag="VHN39_12730"
     CDS             2483..3193
                     /locus_tag="VHN39_12730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817258.1"
                     /translation="MLDPLGGASPLDAAERDREACRASFAQSLRAAPAEDNPYRHWLL
                     RDVLPQHIALAMDALPFAAPPLDGVSGSREIHNNTRRYVDQPAITEYSACRSLADAFQ
                     DPATVAVIEEVTGAKLDGCCLRIEYAQDTDGFWLQPHTDLGVKKFTLLYYLGPAGQLD
                     LGTDVYADAKTWSHRAPFEPGGALAFVPSDRTWHGFEPRPIPVVRKSLILNYVTQDWM
                     AREQLAYPDRPVAGRRAA"
     gene            complement(3213..>3693)
                     /locus_tag="VHN39_12735"
     CDS             complement(3213..>3693)
                     /locus_tag="VHN39_12735"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2817259.1"
                     /translation="DRTAAFIRDEGAPRRREKLDLLSLIECVADDAAMVGGQVEIVDG
                     QPVTVDGDPVALQRLFSNLVDNALKYGGGARINVRLEGGAAVVEIVDEGRGLSADELG
                     RVFQPFYRTDASRNLDNGGVGLGLPIARSTARAHGGDVELMSKPGSTTAIVTLPAAA"
BASE COUNT          538 a         1315 c         1310 g          530 t
ORIGIN      
        1 actgtccgag gcctgagtgg ggtcgcctgg gtggctcgcg cgcggctgaa cggattgccg
       61 aaggcgaagg tgtttccccg ctcgtcggtg acgttgtcca cataggccgt ggcccgccac
      121 gcggcccggc tgagcgcggc ggcgacgcgg ccggagccgt agccgcccat ggcgttcccc
      181 gtgccgccat cgaaggtcag gtaggagcgg ccgacgtagg ccagctgggc cgaggtctcg
      241 gcgtcgaacg ggccgagccg ccagcggtag cgcacgtcgg cgccgcccat ggcgcggggc
      301 acgccgggca ggccgatgtc gcgccgcgcc gggaagacat cgcccgcgcg cgtgatcgag
      361 gggtcctcca gcaggacgtt cgcgcgaacc tgcaggtggt cgtccggccg ccaggtggcc
      421 tcggcctcga cgccggtgtt cgagccgtcg ccgatgttca ccgtcatcgg cagccccgag
      481 gccagccgct ggtcggtttg cagcccgtac cagtcggcgt ggaacaccgc gccgcgcagg
      541 gtcagcgtgt ggtcgaacaa gggcaggcca gcgccgattt cgtagttcca caggtggtcg
      601 ggcttgaact gggccgacag gcgctcgacc gtcgcgccgc cggcctcggc cggaatgttg
      661 aagcccccgg cccggtaccc ctcctgcacc tgggcgtaga tcaccacgtc cggcgtggcc
      721 gcgtagctca ggcgcaactt cggcgccacg ccggtgtcgg tcagccgccg gtgctgcggg
      781 gcgagcgggg ccggggcgat gtcaaagtcg ctcagccggg tgtccacccc ggtcgcgaac
      841 cagcgcgccc cgaccgtggc ggtgatccgc gcggtgaggt cgtaggcgac ctcgccatag
      901 accgccgctt ccgtcagctc atcgcgccga cggtagatcg agcgcgcggc ctcccctgtg
      961 ggcttcaccc tgaccaggaa ggcggcgtcc atctcgtcgg tgtaggagat gaaggccccg
     1021 gccagccagc gcaggggccc gggcgcattg gaggacaaca ggccctcggt cgcccacagc
     1081 ttgatgtgct tgtcctcgtc gaatgcgccc gcggtccgcg agcccccggc cgccaggaac
     1141 gccccggtgg cgtcgtagcg ggtgtccagg gcgtgatcga tgaaggccgt cgaaaccttc
     1201 aggtccgccg ccccgccggc gtgcgaggcc gtggcgccga cttcggagaa gtcgttgtcg
     1261 tgcggctcac gaacgctcgc gtcgcgcgtc agggggccgt cggtcccttg cgtgtactgg
     1321 ctgtcggcgg tggcgatgga ctgatgggcg aacccggcct ccagcgtcca gccgtccggc
     1381 aggtccgcca gtcccgagat ccgcccgccg acgcggcggc tgtagttgac gtctttgagg
     1441 cccagcaccg gattgtcgat gtagccgcca cgctcgtccg aatagaccac cgcgcggatc
     1501 gccgcccgcc cgtcagccag cggcaggttg gtggtggcct ccaggccgga cgacggcgcg
     1561 ccgtgctggg tcagcatgcc ctcgaccgag acctcgcccg tgacgctgga gacgtcaggc
     1621 cgcgcggtga cgatccgcac aatgccgccg atcgagccgg agccgtagag cgtcccctgc
     1681 gggccgcgca gcacctccac ccggtcgatg tcggccagtc tcaggtccgg gtcgggggcg
     1741 ttgtaggtga tcgggacatc atcaaggtag aggccaacgg tcgactgggt cttgccggtg
     1801 aacgagccat cggacagccc gcggacgaag atcttgttgc ggccggaccc caggttggtg
     1861 accgcgacgc cgaccacctg ggaggcgacg tcctcgaagg tcttgccgcc cagcgcgtca
     1921 acgtcgcggg cggagagcac gctgaccgcc gaggcgctgc gggtcagaag ctccggccgc
     1981 ttctccgcgg tcaccaccag ctcgtcgagc cggcgcgcgg gcgctgcgtc aggctcggcg
     2041 cggccggcgc gcaggtcaga cgccgcgggg agcggccggc cgacaacgcg gaagctcctg
     2101 gcgtccacca gttcgaaccc gcagccgggc ggcagcaggg ccgccagcgc cttggccggg
     2161 ctcatggccc ccgacaccgc ccgagaacgg ccgtcgcaac cgcgcgatgg aagaccgcct
     2221 accgagacgc cggcctgcac cgcaaaccga atcagcgccg cggcgagcgg ctcggccggg
     2281 aggtgaaaga ctggcgtttg cgccgcattg gcggtattcg gcgcggcgcc cgcacttagg
     2341 gcaaccagca cggcaagcga agctgcggcc aaggggcgcc ttgcgcctat ggcgctgagg
     2401 tggtcgtctg tccgcggcgt catccaggcg aaagctccag gggagcgagg cgaccagatc
     2461 aatgagtaga agtccactgg ccttgctcga tcccctaggc ggcgcatcgc cgctggacgc
     2521 ggcggagcgc gaccgtgagg cttgccgcgc cagcttcgcg caaagcctgc gcgccgcgcc
     2581 tgcggaggat aacccctacc ggcactggct gctgcgcgat gtcctgcctc agcatatcgc
     2641 cctggcgatg gacgccctgc cgttcgcggc tcccccgctg gacggcgtat ccggctcccg
     2701 cgaaattcac aacaacactc gacgctatgt cgaccagccg gcgatcacgg aatattccgc
     2761 ctgccggagt ttggccgacg ccttccagga ccccgccacc gtggcggtga tcgaggaggt
     2821 gaccggggcc aagctcgacg gttgttgtct gcggatagaa tacgctcagg acacggacgg
     2881 cttctggctg cagccgcaca ccgatctggg cgtcaagaag ttcaccctgc tctactacct
     2941 cggtccggcc ggtcagctgg acctgggcac ggacgtctat gccgacgcca agacctggtc
     3001 gcaccgcgcg cccttcgagc ccggcggggc gttggccttc gtgccgtccg accggacctg
     3061 gcacggcttc gagccccggc cgatcccggt ggtgcgaaag tcgctgatcc tcaactatgt
     3121 gacgcaagac tggatggccc gcgaacagct cgcctatccg gacaggcccg tcgccggccg
     3181 ccgcgccgcc tgagacgccc aaggcaggag cgttaggccg ccgccggcag ggtgacgatc
     3241 gccgtcgtgc tgccgggctt ggacatcagc tccacgtcgc cgccgtgggc gcgggccgtg
     3301 gagcgggcga tcggcaggcc gaggcccacg ccgccgttgt cgaggttgcg cgaggcgtcg
     3361 gtgcggtaga acggctggaa cacgcggccc agttcgtcgg ccgaaagccc ccgcccctcg
     3421 tcgacgatct ccaccaccgc cgcgccgccc tcgagccgca cattgatgcg cgcgccgccg
     3481 ccatatttga gcgcgttgtc caccaggttg gagaacaggc gctgcagcgc caccggatcg
     3541 ccatccaccg tcaccggctg gccgtcgacg atctccacct ggccgccgac catcgcggca
     3601 tcgtcggcga cgcattcgat cagtgacagc aggtccagct tttcccggcg gcgcggcgcg
     3661 ccctcgtcgc ggatgaaggc cgcggtcctg tcc
//
LOCUS       DATAJL010000667         2760 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_24586,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000667 DATAJL010000000
VERSION     DATAJL010000667.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24586"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(21..215)
                     /locus_tag="VHN39_12740"
     CDS             complement(21..215)
                     /locus_tag="VHN39_12740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817260.1"
                     /translation="MANDSVIPRNRGLSVGGVLIGLGVLALAAIVAFILLSAHSNKAL
                     RTDAVTSAASSLAASPPPPR"
     gene            complement(282..860)
                     /locus_tag="VHN39_12745"
     CDS             complement(282..860)
                     /locus_tag="VHN39_12745"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX2817261.1"
                     /translation="MYHEGNRQLQDAFGSRALADRLDEKLRRGRFNDDDAAFIGSLGF
                     FFLATADAEGRPDCSFKGGPPGFARVVAPDLLIFPDYDGNGMFKSLGNLGVNPNVGIL
                     FIAFGEAPKRLRLNGTAEVVGDDPRIAEIPGAQLLVKVTPVDIFPNCPRYVPNLGLVE
                     PSAYLPEPDAPPLEPKWKSFELFSDVVPPRRR"
     gene            943..2019
                     /gene="prfA"
                     /locus_tag="VHN39_12750"
     CDS             943..2019
                     /gene="prfA"
                     /locus_tag="VHN39_12750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEX2817262.1"
                     /translation="MRLPQARLDQVLDRFREIEARMGAATDGQEIVRLGKEHAELKPV
                     VDAVQTLKRARDEAPELEEMAAAGDPEMAAMARDELEALKDRLPALEHEVALLLAPKD
                     RDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAAERGWRVEIDSLSEGDAGGYKEI
                     IAAVTGDGVFGRLKFESGVHRVQRVPATEAQGRIHTAAATVAVLPEPEDVEIDIKDGD
                     IRIDTYRSSGAGGQHVNKTDSAVRITHLPTGIVVTSSEKSQHQNRARAMKALKVKLYD
                     QQREALDTARSDARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYNLPKIMEGEAL
                     DDVISPLIAEDQAARLSALEDEFN"
     gene            2267..2584
                     /locus_tag="VHN39_12755"
     CDS             2267..2584
                     /locus_tag="VHN39_12755"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase family
                     protein"
                     /protein_id="HEX2817263.1"
                     /translation="MPIIKADSGLVTQINVFTVPEGGQQALIDLLSEAARFASDTPGW
                     VSASLHRSQDGTRVVNYAQSEDLAAAQAVIARLRNGGWFARNKAKGESHPGLYDVVFT
                     LER"
BASE COUNT          481 a          986 c          917 g          376 t
ORIGIN      
        1 cggcgggggc ctttttcaat tcagcggggc ggcggcggcg aggccgcgag gctggaggcc
       61 gcgctggtca ccgcgtctgt gcgcagcgcc ttgttgctgt gcgcgctcag cagaatgaag
      121 gccacgatcg ccgccagggc caggacgccc aaaccgatca gcaccccgcc cacgctcagg
      181 ccacggtttc gcgggatcac gctgtcgttc gccataggtt caggtctcca ggtgtcccgg
      241 cgagcctaac ggtcgcccgg cccaggcgtt ccggttgagg cttaacgccg gcgcggcggc
      301 accacgtcgg agaagagctc gaagcttttc cacttgggct ccaagggcgg cgcatcgggt
      361 tccggcagat aggccgaggg ctcgaccagg cccaggttcg gcacgtagcg cgggcagttg
      421 gggaagatat ccaccggcgt caccttcacc agcaactggg cgccggggat ttccgcgatc
      481 ctcggatcgt cgcccaccac ctcggcggtc ccgttcagcc gcagccgctt gggcgcctcg
      541 ccaaaggcga tgaacaggat gccgacattg ggattcaccc cgagattgcc caggctcttg
      601 aacatgccgt tgccgtcgta gtcggggaag atcagcaggt ccggcgccac gacccgggcg
      661 aaccccggcg gaccgccctt gaacgagcag tcgggccgcc cctcagcatc cgccgtcgcc
      721 aggaagaaga acccgaggct gccgatgaag gccgcgtcgt cgtcgttgaa ccggccgcgc
      781 cggagcttct cgtccaggcg gtcggccagc gcgcggctgc cgaaagcatc ctgaagctgg
      841 cgattgccct cgtggtacat ggggtcctcc cactccgtcg gtttggcaag caggcggcgg
      901 aaggctagag gaagctcccc ttctcaacag gcgtccagac ccttgcgact tccccaggcc
      961 cggctcgatc aggtgctcga ccgcttccgc gagatcgagg cgcgcatggg cgcggccacg
     1021 gacggccagg agatcgtgcg cctgggcaag gagcacgccg agctgaagcc ggtcgtcgac
     1081 gccgtccaga ccctgaagcg cgcccgcgac gaagcccccg agctggagga aatggccgcg
     1141 gccggcgacc ccgagatggc cgccatggcc cgcgacgagc tggaggcgct gaaggaccgg
     1201 ctgccggcgc tggagcacga ggtcgccctg ctgctggccc ccaaggacag ggacgagaac
     1261 gcgtccgcca ttcttgaagt ccgcgccggc accgggggcg acgaggccgc cctcttcgcc
     1321 ggcgacctct tccgcatgta ccagcgctac gccgccgagc gcggctggcg ggtggagatc
     1381 gactcgctct cggagggcga cgccggcggc tacaaggaaa tcatcgccgc ggtcaccggc
     1441 gacggggtct tcggccgcct gaagttcgaa agcggcgtcc accgcgtgca gcgggtgccg
     1501 gccacggagg cgcaaggacg catccacacc gccgccgcca ccgtcgccgt cctgccggaa
     1561 cccgaggacg tggagatcga catcaaggac ggcgatatcc gcatcgacac ctaccgctcc
     1621 tccggcgccg gcggccagca cgtcaacaag accgactccg ccgtgcgcat cacccacctg
     1681 ccgaccggca tcgtggtgac ctcctcggag aagtctcagc accagaaccg cgcccgggcc
     1741 atgaaggcgc tgaaggtcaa gctctacgac cagcagcgcg aggcgctgga caccgcccgc
     1801 tccgacgccc ggaagagcca ggtgggctcc ggcgaccgct ccgagcgcat ccgcacctac
     1861 aacttcccgc aaggccgggt caccgaccac cggatcaacc tgaccctcta caacctgccc
     1921 aagatcatgg agggcgaggc gctggacgac gtcatcagcc cgctgatcgc cgaggaccag
     1981 gccgcgcggc tgtcggcctt ggaagacgag ttcaactgac gggcgtcagc gccggaccgc
     2041 gttgctccgc gccctctttc gccctagggt cagtctgtcg aaaaggacct ggatcggcat
     2101 cggtaagccc gatcccttcc ccgcgcgggg aagctccgac cgcccgcaag ggcggcccgc
     2161 ggcaagcaac ggcgagatcg cgccgtcggc ttggcgcgtg ctgggttcat cgactgagca
     2221 acgtctgtcc gtcggcacgg tccgcctcat caagaggagc ggcgccatgc cgattatcaa
     2281 agccgacagc ggactcgtga cccagatcaa cgtcttcacg gtccccgagg gcggccagca
     2341 agccctgatc gacctgctga gcgaggccgc caggttcgcc agcgacacgc caggctgggt
     2401 gtccgccagc ctgcaccgca gccaggacgg aacccgggtg gtgaactacg cccagagcga
     2461 agacctcgcc gccgcccagg cggtgatcgc gcggctgcgc aatggcggct ggttcgcccg
     2521 caacaaggcc aaaggcgagt cccatcccgg tctctacgac gtggtcttca ccctggaacg
     2581 atgaacgcgc gcggcggcct ggcccagcgc tccaaaccgg acggaccccg aaacggcctg
     2641 aaagccgacc tgttcgacgt ccgatcgaat gctgacccaa acgtcaggct ggttcgatcg
     2701 ccggctcgta gcggtccatc gccgcctccg tcgcgtcgaa atcctgcagc gcgccgagag
//
LOCUS       DATAJL010000668         1586 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_37863,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000668 DATAJL010000000
VERSION     DATAJL010000668.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37863"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VHN39_12760"
     CDS             <1..244
                     /locus_tag="VHN39_12760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817264.1"
                     /translation="AAIAASPHAHFVLIDDARAFLAPPPPPFDPDKWPELAEVLTVIR
                     RQTPYYCVAILDTLICVPPAARGDIRAFCNAIRPKI"
     gene            325..>1586
                     /gene="aspS"
                     /locus_tag="VHN39_12765"
     CDS             325..>1586
                     /gene="aspS"
                     /locus_tag="VHN39_12765"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEX2817265.1"
                     /translation="MHAYRTHTCGALRAADTGQTVRLSGWIHRKRDHGGLMFVDLRDH
                     YGLTQLVLHPETPGFALVERLRAESVIRIDGEVVARSPETVNPGLPTGEIEIRVKDVV
                     VLSEASELPLPVFGEPDYPEEIRLKNRHLDLRRETLHKNIVLRSKVIHSIRNRMIDQG
                     FLEYQTPILTASSPEGARDFLVPSRLHPTKFYALPQAPQQFKQLLMVSGFDRYFQIAP
                     CFRDEDLRADRSLEFYQLDVEMSFVTQEDVFAAIEPVMHGVFEEFADGKPVTPYPFPR
                     IPYRECMGKYGTDKPDLRNPIVMQDVSGPFRGGGFGLFARILEDAKNAVWGIPAPTGG
                     SRAFCDRMNSWAQGEGQPGMGYIFWSEDQGGWGGPIAKNLGPEQTDVVMGQLGMGKGD
                     AAFFAAGDPKTFAKFAGLARAKVGTDLKL"
BASE COUNT          251 a          572 c          505 g          258 t
ORIGIN      
        1 tgccgccatc gccgcctcgc cgcacgcgca tttcgtgctg atcgacgatg cgcgggcctt
       61 tctcgcgccg ccgccgccgc cattcgaccc cgacaagtgg ccggagctgg ccgaggtgct
      121 gacggtcatt cggcggcaga cgccctatta ttgcgtggcc attctggaca ccctgatctg
      181 cgtcccgccg gcggcgaggg gcgacatccg cgcgttctgc aatgccatcc gtccgaagat
      241 ctgacgcgtc cagcggcgcc ttgactttcc gcccccctca tgcgcccttc cgcgcctcgt
      301 aaaacagccg aatttcccag gtaaatgcac gcctaccgca cccacacctg cggcgcgctt
      361 cgcgccgccg acaccggcca gaccgtccgg ctttccggct ggattcaccg caagcgcgat
      421 cacggcgggc tgatgttcgt ggacctgcgc gaccactacg gcctgaccca gctggtgctg
      481 catccggaga cgcccggctt cgccctcgtc gaacgcctgc gcgccgagag cgtgatccgc
      541 atcgacggcg aggtggtcgc ccgctcgccc gagaccgtga atcccggcct gcccaccggt
      601 gagatcgaga tccgggtgaa ggatgtcgtc gtcctttcgg aagcctccga gctgccgttg
      661 ccggtgttcg gggagcccga ctatcccgaa gagatccggc tgaagaaccg ccacctcgat
      721 ctgcgccgcg agaccctgca caagaacatc gtcctgcggt cgaaggtcat ccactcgatc
      781 cgcaaccgga tgatcgacca gggcttcctg gagtaccaga cgccgatcct gacggcgtcc
      841 tcgcctgagg gcgcccgcga cttcctggtg ccgtcccgcc tgcacccgac caagttctac
      901 gccctgccgc aggcgccgca gcagttcaag cagctgctga tggtctcggg cttcgaccgc
      961 tatttccaga tcgccccctg cttccgcgac gaggacctgc gcgcggaccg cagcctggag
     1021 ttctaccagc tcgacgtcga gatgagcttc gtcacgcaag aggacgtgtt cgccgcgatc
     1081 gagcctgtca tgcacggcgt gttcgaagag ttcgccgacg gcaagccggt gacgccgtat
     1141 ccgttcccgc gcatccccta ccgcgagtgc atgggcaagt acggcaccga caagccggac
     1201 ctgcgcaatc cgatcgtcat gcaggacgtg tccggcccct tccgcggcgg cggcttcggc
     1261 ctcttcgcgc gcatcctgga agacgccaag aacgcggtgt ggggcatccc tgcgccgacg
     1321 ggcggctcca gggccttctg cgaccggatg aacagctggg cgcagggcga gggccagccg
     1381 ggcatgggct acatcttctg gagcgaggac cagggcggct ggggcggccc gatcgccaag
     1441 aacctgggcc ccgagcagac cgacgtggtc atgggccagc tcggcatggg caagggcgac
     1501 gccgccttct tcgcggcggg cgatcccaag accttcgcga agttcgcggg cctggcgcgc
     1561 gccaaggtgg gcacggacct gaagct
//
LOCUS       DATAJL010000669         3340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_11898,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000669 DATAJL010000000
VERSION     DATAJL010000669.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3340
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11898"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..624
                     /locus_tag="VHN39_12770"
     CDS             <1..624
                     /locus_tag="VHN39_12770"
                     /inference="COORDINATES: protein motif:HMM:NF017519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX/YebB-like N1pC/P60 family cysteine
                     hydrolase"
                     /protein_id="HEX2817266.1"
                     /translation="ATMPIAPDVLTALVPQPYATIRGEVRDGDILLCSANDRFSRLIR
                     WATRSPWSHVAIAFRMEAIDRVMVLECVAKIGVRAVPLSNFIARTSGGIAPYPGQILL
                     ARHKGMSAKARSRPMKRIAEFAFDRLGNRFSQAEALKIALRIAMGRFERRMPRMLGPK
                     DEFICSEYVARSLKAVGVEIPWDGLGFIAPSDFACDPRIDAVAQIKT"
     gene            complement(633..1607)
                     /locus_tag="VHN39_12775"
     CDS             complement(633..1607)
                     /locus_tag="VHN39_12775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEX2817267.1"
                     /translation="MLLAVRHSTRYQYDKPVRESVMELWMQPQKRANQRLISFDLELD
                     PPAQLFSYADTFGNAVYHFDLPQPHERLTIMARSAVETEALTALPDGLDRGEWDRLKS
                     DFVRGEHFDFLHPHGFAEPTAALAAFVAEKKLEELRVRDPLNALRDLNLAVYEAFAYE
                     AGVTRADSPIDDVLKARKGVCQDFAHVMIAICREWGIPARYVSGYLFTDRKAGDRSDP
                     DATHAWVEVFLPSLRWVGFDPTNNIVAGERHIACAVGRDYSDVPPSRGVYKGEAESEL
                     AVGVTVRKARAAVSEPEFLRISQPAPRPGERRSQYSGLAYDQQRQQQQ"
     gene            complement(1623..2570)
                     /locus_tag="VHN39_12780"
     CDS             complement(1623..2570)
                     /locus_tag="VHN39_12780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-E domain-containing protein"
                     /protein_id="HEX2817268.1"
                     /translation="MMLARVADSLYWIGRYVERAEHLCRLSDVMLTATLDRTESATQI
                     ARIGLAAVGDPDDATKARDPYEATRALVLDRSDPGSVASSLARARENARQVRDQITTE
                     TWERLNLIHLRMSDPNAARAFADGSQAFLHETIADLHLFKGAADATMSHGEGWRFLLL
                     GVYLERAQLIGALLEVCFGDRRRRAITDHSALTSLLRMGCALEPYLRVYTADMQPRFI
                     LEFLLLDEDFPRSVRFCTARIEEHLTSISRHADAVGVTGPDRLAGRLRARLQYADIAE
                     VQAGGASAFLGAVLDECHAVHRAVYETFVAYTLEQRLPA"
     gene            complement(2581..>3340)
                     /locus_tag="VHN39_12785"
     CDS             complement(2581..>3340)
                     /locus_tag="VHN39_12785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX2817269.1"
                     /translation="NSAYFEHAYLARLMGTPLVEGRDLVVHDNMVYMRTTTGLRRIDV
                     IYRRVDDDFIDPLTFRRDSGLGSAGLFNAYRAGNVVICNAPGTGVADDKAVYAYVPEI
                     IRYYLGEDAILPNIETFLCREPAQLSHVLANLDKFVVKAVGASGGYGMLVGPHSTKAQ
                     QDEFTAALKADPDNYIAQPTIQLSTGPCLIDHAIESRHVDLRPFILSGEKIVVTPGAL
                     TRVALRKGSLVVNSSQGGGSKDTWVLTDRKDLQP"
BASE COUNT          518 a         1051 c         1232 g          539 t
ORIGIN      
        1 gcaacgatgc cgatcgcgcc cgacgtcctg accgcgcttg tgccgcaacc ctacgccacc
       61 atcaggggcg aggtgcgcga cggcgatatt ctgctctgtt cggcgaacga ccggttctcg
      121 cgcctgatcc gctgggccac caggagcccc tggagccacg tggcgatcgc cttccggatg
      181 gaggccatcg accgagtgat ggtgctggag tgcgtcgcga agatcggggt gcgcgccgtg
      241 ccgctctcaa acttcatcgc caggaccagc ggcgggatcg cgccttaccc cggccagatc
      301 ctgctggcgc gccacaaggg gatgtcggcc aaggcccgca gccggccgat gaagcggatc
      361 gcggaattcg cctttgaccg gctgggcaat cggttctcgc aagccgaggc cctgaagatc
      421 gcgctgcgca tcgccatggg ccgcttcgag cggcgcatgc cccggatgct ggggccgaag
      481 gacgagttca tctgctcgga gtatgtggcg cgcagcctca aggcggtcgg ggtggagatt
      541 ccgtgggacg gcctgggctt catcgccccg tccgacttcg cctgcgatcc gcggatcgat
      601 gctgtagccc agatcaagac ctgagcgagg tcctactgct gctgctgccg ctgctggtcg
      661 taggccaggc ctgagtactg gctgcggcgc tcgccggggc gcggcgccgg ctgggagatt
      721 cgcaggaact ccggttcgct gaccgccgcg cgcgccttgc gcacggtgac gcccaccgcc
      781 agctcgcttt ccgcctcgcc cttatagacc ccgcgcgagg gcggcacgtc ggagtagtcg
      841 cggccgacgg cgcaggcgat gtggcgctcg cccgcgacga tattgttggt cggatcgaag
      901 ccgacccagc gcaggctcgg caggaacacc tcgacccagg cgtgggtggc gtccggatcg
      961 gagcggtcgc cggccttgcg gtcagtgaac aggtagcccg agacatagcg tgccggaatg
     1021 ccccattcgc ggcagatggc gatcatcaca tgggcgaagt cttggcagac gcccttgcgg
     1081 gccttcagga cgtcgtcgat cggactgtcg gcgcgggtga cgcccgcctc gtaggcgaag
     1141 gcctcgtaga ccgccaggtt gaggtcacgc agcgcgttca gcgggtcgcg gacccgcagc
     1201 tcctccagct ttttctcggc gacgaaggcg gccagcgcgg cggtgggttc ggcaaagccg
     1261 tgcggatgca ggaagtcgaa gtgctcgccg cgcacgaaat cggacttcag ccggtcccat
     1321 tcgccgcggt cgaggccgtc gggcagggcg gtcagcgctt cggtctccac cgccgagcgg
     1381 gccatgatgg taaggcgctc gtgaggctgg ggaagatcga agtggtagac ggcgttgccg
     1441 aaggtgtcgg cgtaggagaa cagctgggcg ggcggatcga gctcgagatc gaagctgatc
     1501 agccgctggt tggcgcgctt ctgcggctgc atccacagct ccatcacgct ctcgcgcacg
     1561 ggcttgtcgt actggtagcg ggtggaatgg cggacggcga ggagcacggg cttttcaggt
     1621 ccttacgcgg gcaggcgctg ttcgagggtg taggcgacga aggtctcgta gaccgcgcga
     1681 tgcaccgcgt ggcactcgtc gagcacggcg cccaggaaag cgctggcgcc gccggcctgc
     1741 acctcggcga tgtcggcgta ctgcaggcgc gcgcgcaggc ggccggccag gcggtcgggg
     1801 ccggtgacgc ccacggcatc ggcatgacgg ctgatggagg tcaggtgctc ctcgatccgc
     1861 gcggtgcaga agcggaccga gcgggggaaa tcctcatcga gcagcaggaa ttccaggatg
     1921 aagcgcggct gcatgtcggc ggtgtagacc cgtagatagg gctccagcgc gcagcccatg
     1981 cgcagcaggc tggtcagcgc cgagtggtcg gtgatggccc ggcggcggcg gtcgccgaag
     2041 cagacttcca gcagggcgcc gatcagctgg gcgcgctcca gatagacgcc cagcagcagg
     2101 aaccgccagc cctcgccatg gctcatggtg gcgtcggcgg cgcccttgaa caggtgcagg
     2161 tcggcgatgg tctcgtgcag gaaggcctgg ctgccgtcgg cgaaggcgcg ggcggcgttc
     2221 gggtcgctca tccgcaggtg gatgaggttc agccgctccc aggtttcggt ggtgatctgg
     2281 tcgcgcacct ggcgggcgtt ctcacgggcg cgagccagcg aactggccac cgagcccggg
     2341 tcgctgcggt cgagcaccag ggcgcgggtc gcctcgtaag ggtcgcgggc cttggtcgca
     2401 tcgtccggat cgccgacggc cgccagcccg atacgggcga tctgggtggc cgattccgtc
     2461 cggtccaggg tggccgtcag catcacgtcg gagaggcggc acaggtgttc ggcccgctcc
     2521 acatagcggc cgatccagta gaggctgtcc gccacccgcg cgagcatcat ggctgccccc
     2581 tcacggctgt aggtccttgc ggtcggtcag cacccaggtg tccttggacc cgccgccctg
     2641 gctggaattg actaccaggg aacccttgcg cagcgccacg cgggtgagtg cgccgggcgt
     2701 caccacgatc ttctcgccgg agaggatgaa ggggcgcagg tccacgtgcc gggactcgat
     2761 ggcgtggtcg atcaggcagg gaccggtgga aagctggatg gtcggctggg cgatgtagtt
     2821 gtccggatcg gccttgagcg ctgcggtgaa ctcgtcctgc tgggccttgg tggagtgcgg
     2881 gccgaccagc atgccgtagc cgccggacgc gcccacggcc ttgaccacga acttgtcgag
     2941 gttggccagc acatggctga gctgggcggg ttcacggcag aggaaggtct cgatattggg
     3001 caggatggcg tcttcgccaa ggtagtagcg gatgatctcc ggcacatagg cgtagaccgc
     3061 cttgtcgtcg gcgacgccgg tgccaggcgc gttgcagatc accacattgc cggcgcggta
     3121 ggcgttgaac aggcccgccg aaccgagccc tgagtcgcga cggaaggtca gggggtcgat
     3181 gaaatcgtcg tccacccgtc ggtagatcac atcgatccgg cgcaggcccg tcgtagtgcg
     3241 catgtagacc atattgtcgt ggaccacgag gtcgcggccc tcgaccagcg gcgtgcccat
     3301 cagccgggcc aggtaggcgt gctcgaagta ggcggagttg
//
LOCUS       DATAJL010000670         2898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69189,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000670 DATAJL010000000
VERSION     DATAJL010000670.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2898
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69189"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VHN39_12790"
     rRNA            <1..252
                     /locus_tag="VHN39_12790"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            331..445
                     /gene="rrf"
                     /locus_tag="VHN39_12795"
     rRNA            331..445
                     /gene="rrf"
                     /locus_tag="VHN39_12795"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            526..602
                     /locus_tag="VHN39_12800"
     tRNA            526..602
                     /locus_tag="VHN39_12800"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:560..562,aa:Met,seq:cat)
     gene            complement(864..1694)
                     /gene="kynA"
                     /locus_tag="VHN39_12805"
     CDS             complement(864..1694)
                     /gene="kynA"
                     /locus_tag="VHN39_12805"
                     /EC_number="1.13.11.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004833 - tryptophan 2,3-dioxygenase
                     activity [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan 2,3-dioxygenase"
                     /protein_id="HEX2817270.1"
                     /translation="MSPGDPPDAERPHARPDLSYGDYLKLDRLLAAQMPLSAEHDELL
                     FIIIHQTSELWMQLSLHELGAARDQVRRDELGPAFKMIARVSRIQAQLIQSWDVLATM
                     TPSDYEAIRPSLGQSSGFQSYQYRELEFILGAKTAANLTVHEPDAAIHARLLAAFRAP
                     SLYDEALRLLDRRGLRLPASCVERDWTLPYVPNPAVEAAWLEVYRDPQRWWDLYELAE
                     KLVDLEFRFQQWRFAHMKTVERIIGFKAGTGGSSGVAYLSRALDQSFFPELFSLRTRL
                     "
     gene            1820..2293
                     /locus_tag="VHN39_12810"
     CDS             1820..2293
                     /locus_tag="VHN39_12810"
                     /inference="COORDINATES: protein motif:HMM:NF014376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family ligand binding domain-containing
                     protein"
                     /protein_id="HEX2817271.1"
                     /translation="MISLPSRTGLLLAATAVAALGTGARAADQAHRVTGVEITAMVAT
                     LKDGLATAPLPTGPGAVVLAARRDRDGEVEVHEHLSDELVVRSGHAVFRVGGTVAGNR
                     QTAPGEWRGGAMTGGDLYRLGPGDVLWIPAGMPHQALVDKGGAFSYLAIKFEAKP"
     gene            2416..2823
                     /locus_tag="VHN39_12815"
     CDS             2416..2823
                     /locus_tag="VHN39_12815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817272.1"
                     /translation="MILAAIAVAGTVGSLTDWLFMGVLFHDAYNRYPEVWREGVVGGT
                     NRGPIIWSSVLGYLMTAGVVGLCVMARVTSVGGGLEIGALAWLAGPPVVIIVANMFVK
                     MDPKITVAHCAGYAARLLLAGAAAGFVLARAAA"
BASE COUNT          494 a          885 c          986 g          533 t
ORIGIN      
        1 cttgagagga tctgtcccta gtacgagagg accgggatgg acatacctct ggtggacctg
       61 tcgtggcgcc agccgcgcag cagggtagct aagtatggaa tagataaccg ctgaaagcat
      121 ctaagcggga aactaacctc aaaacaaggt ttcgccgaga gccgtggtag accaccacgt
      181 tgataggcca ggtgtggaag tgccgcgagg catgtagctt actggtacta atcgctcgat
      241 cggcttgatc gttcttagca aaattcatgt gtgctcaata aagagcctgc gcagacgttg
      301 atgtcttctc aatcacatcc gtttcgttga cctggtggtt ttgccggggg gtccccaccc
      361 gatcccattc cgaactcggt cgttaagccc tcctgggccg atggtacttc gtctcaaggc
      421 gcgggagagt aggtcgccgc caggtctacc aaacggatgt gagatccaga cccttcaatt
      481 cacgatgcca gatatcgagc tgcgctcgat gtgaggttga cttgccgcgg ggtggagcag
      541 cccggtagct cgtcaggctc ataacctgaa ggtcacaggt tcaaatcctg tccccgcacc
      601 caagtccccc acactgaagc gcagacttga taggcctccc ttgcgggagg tttttctttg
      661 ttaggcgttc gcctgaagac gacctcgttc acaccgagga agtcacaggt tcaaatccgc
      721 cctccgggcc tttttcggtt cgaaaaggtc ccccggacct tttcgtggct acgccaccac
      781 ctgcgaagcc ccgcacccaa gatcagaaaa ggccggctcc ggaaacggga ccggcctttt
      841 tgctgttcgg gcgccgacgt tacttacagg cgagttctaa ggctgaacaa ctccgggaag
      901 aacgactggt cgagcgcgcg gctgagatag gccacgccgg agctgccgcc ggtgccggcc
      961 ttgaagccga tgatccgctc gacggtcttc atgtgtgcga accgccactg ctggaagcga
     1021 aactccaggt cgaccaactt ctcggccaat tcgtagagat cccaccagcg ctgcggatcg
     1081 cggtaaacct caagccaggc cgcctcgacc gcggggttag ggacgtaggg caaggtccag
     1141 tcgcgctcca cgcacgacgc cggaagccga agcccgcgcc ggtcgagcag acgcagggcc
     1201 tcatcgtaga ggctgggcgc gcgaaaggcc gccagcagcc gggcgtggat cgccgcgtcg
     1261 ggctcgtgca ccgtcaggtt cgcggcggtc ttggcgccca ggataaactc gagctcacgg
     1321 tactggtagg actggaagcc tgagctctgg cctagcgagg ggcggatcgc ctcgtagtcg
     1381 ctgggggtca tggtcgccag gacatcccag gattggatca actgcgcctg gatgcggctg
     1441 acgcgggcga tcatcttgaa cgccgggccg agttcgtcgc gccgcacctg gtcgcgcgcg
     1501 gcgccaagct cgtgcagcga gagctgcatc cacagctcgg acgtctgatg gatgatgata
     1561 aacaacaact cgtcgtgctc ggccgacagg ggcatctggg ccgccagcag ccggtctagc
     1621 ttcagatagt cgccgtagct caggtctggc cgcgcgtggg gccgttcggc atcgggtgga
     1681 tcgccagggc tcatcggact tcactccacg tgccgccaag gtccaccggc gaccggcgtc
     1741 ctacaagcac tgcgccggtt tttgtttgcg gataggcgcc ggcctgtggc cacctgccgg
     1801 cccaaaccgg agaccgcgca tgatcagcct tccctcccga acgggcctcc tgctggccgc
     1861 caccgccgtc gcggccctgg ggacgggcgc gcgcgccgcg gaccaggccc atcgcgtcac
     1921 gggcgtcgag atcacggcca tggtggcgac gctgaaagac gggctggcca ccgcgcctct
     1981 gccgacgggg ccaggggctg tcgtcctggc ggcgcggcgc gaccgggacg gcgaggtcga
     2041 ggtgcatgag cacctgagtg atgagcttgt ggtccgctcg ggccatgcgg tgttccgggt
     2101 cggtgggact gtagctggga accgccagac cgcgccgggc gaatggcgcg gcggggcgat
     2161 gacgggcggc gacctctacc ggctggggcc cggcgatgtc ctttggattc cggccggcat
     2221 gccgcaccag gccctggtcg ataagggcgg cgcgttcagc tatctggcga tcaagttcga
     2281 ggcgaagcct tagtgtgctg gccgcaagcg cttgcgaact tcggaatcgg gacactagcc
     2341 gcggcgcact ggccgcgccc ggtccccgtg ctaggctgaa ccctggctag ggaacggggg
     2401 ttcgatgtca tgtggatgat cttggccgcg atcgcggtgg ctggaacggt gggctcgctc
     2461 accgactggc tgttcatggg ggtgttgttt cacgacgcct acaaccgcta tccggaggtc
     2521 tggcgcgagg gcgtggtggg cgggaccaac cgaggcccga tcatctggtc ctcggtgctg
     2581 ggctatctga tgaccgccgg cgtggtcggg ctgtgcgtca tggcccgcgt gacctcggtc
     2641 ggaggcgggc tggagatagg cgcgctggcc tggctcgcgg ggccgcccgt ggtgatcatc
     2701 gtggccaata tgttcgtcaa gatggacccg aagatcacgg tggcgcattg cgccggatat
     2761 gccgcgcgcc tgctgttggc gggcgccgcg gccgggttcg tgctggcgcg ggccgcggcc
     2821 tgatctacct ggtgaagatc gccttgggca tcatcacgtg gacgcccttg ttgcggtcga
     2881 cgagttcggt gatgtcga
//
LOCUS       DATAJL010000671         1623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69218,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000671 DATAJL010000000
VERSION     DATAJL010000671.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1623
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69218"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            69..788
                     /locus_tag="VHN39_12820"
     CDS             69..788
                     /locus_tag="VHN39_12820"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0140098 - catalytic activity, acting on
                     RNA [Evidence IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase"
                     /protein_id="HEX2817273.1"
                     /translation="MARLDRLLANLGYGSRRDVTDLVARRQVVLDGEVVKDSGAKVAI
                     AADLPTRLTVSGQPLDPPAPLTLVMHKPLDVVCSHREPGRSVYELLPHRWRAREPALS
                     SIGRLDKDTTGLLLITDDGPFLHRVISPRSHVAKRYVATLARPLTGDEAEVFAAGTLM
                     LEGEKDPLAPAALEALGATEARLTITEGRYHQVRRMFAAVGNHVTALHRDRIGDLALP
                     EELEAGAWRILTPDEQAAIFA"
     gene            982..>1623
                     /locus_tag="VHN39_12825"
     CDS             982..>1623
                     /locus_tag="VHN39_12825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817274.1"
                     /translation="MFELGREFMRLFAPEKVWGDRGRPFVDGLTGGDPTLLELLDLNL
                     LQQEAKAADVAAGRVSAQDKAQRRLDAAVVWREVARRSGDAVALRKAAAAAETACAAF
                     DPHRRPDAWARARCEQGFSGLLGAELFGDPGLDAAAAATFREARSVARGGLAAPLADI
                     GIAVVEGRVELAKGDAAAAWAAIARFNAPIAALDAMTRRSPAARPLAAEARLIR"
BASE COUNT          232 a          581 c          572 g          238 t
ORIGIN      
        1 catggcgacg ccggcggcta caagatcttc gaggcgagca agtgagcaag cctgccccca
       61 aggctcccat ggcgcggctc gaccgactgc tggccaatct cggctatggg tcgcggcgag
      121 atgtcaccga tctggtggcg cgccgccagg tggtgctgga cggagaggtg gtgaaggatt
      181 ccggcgcgaa ggtcgccatc gccgccgacc tgccaacgcg gctgacggtg tcgggccagc
      241 cgctcgatcc gccggcgccg ctgacgctcg tcatgcacaa gccgctggac gtggtctgtt
      301 cgcaccgcga gccggggcgc agcgtctatg agctcctgcc gcaccgctgg cgggcgcggg
      361 agccggcgct gtcgagcatc gggcggctcg acaaggacac cacgggcctg ttgctgatca
      421 ccgacgacgg gccgtttctg caccgggtga tctcgcccag gagccacgtg gccaaacgct
      481 atgtggccac gcttgcccgg ccgctgaccg gcgacgaggc cgaggtgttc gccgccggga
      541 ccctgatgct ggagggcgag aaggacccgc tggcgccggc ggcgctcgaa gcgctgggcg
      601 cgaccgaggc gcggctgacc atcaccgagg gccgctatca ccaggtgcgg cggatgttcg
      661 ccgcggtggg caaccacgtc accgccctgc accgcgatcg catcggcgac ctggctctcc
      721 ccgaagagct agaagcgggc gcgtggcgca tcctgacccc ggacgagcag gccgcgatct
      781 tcgcctgaca ggcgtttgcc gttaaccaat gcctagggaa ccggcgaatc cgtcgcgctt
      841 tactgtggag tgtaagacac ggttaaccat acttaggaaa ttaaccactt gtttacgatc
      901 acggctccgg ctttgctctt atccgtcaga gcgcgaggtc gccgtctcat accgggacgt
      961 cggccagacg ggagcggcgg tatgttcgag ttgggtcgtg agttcatgcg gctgttcgcc
     1021 cccgaaaagg tctggggcga ccggggacgg ccgtttgtgg acggcctgac cggcggcgat
     1081 cccaccctgc tcgaactgct cgacctcaat cttctgcaac aggaagccaa ggccgccgac
     1141 gtggccgcag gccgggtcag cgcccaggac aaggcccagc gccggctgga cgccgcggtg
     1201 gtgtggcgcg aagtggcccg ccgctccggg gacgccgtgg cgttgcgcaa ggccgccgcc
     1261 gccgccgaaa ccgcctgcgc cgccttcgac ccccatcgcc gccccgacgc ctgggcccgc
     1321 gcccgctgcg aacagggctt ctccggcctc ctgggcgccg agctgttcgg cgatccgggc
     1381 ctggacgccg cggccgccgc caccttccgc gaggcccgtt cggtggctcg gggcggtctg
     1441 gccgcgccgc tggccgacat cggcatcgcc gtggtcgagg gccgcgtcga gctcgccaag
     1501 ggcgacgccg ccgccgcctg ggccgccatc gcccgtttca acgccccgat cgcggcgctt
     1561 gacgccatga cccgccgctc gcccgccgcc cggccgctgg ccgccgaggc caggctgatc
     1621 cgc
//
LOCUS       DATAJL010000672         1513 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38025,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000672 DATAJL010000000
VERSION     DATAJL010000672.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38025"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..1405
                     /gene="fabF"
                     /locus_tag="VHN39_12830"
     CDS             101..1405
                     /gene="fabF"
                     /locus_tag="VHN39_12830"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEX2817275.1"
                     /translation="MTTAARRVVVTGIGLITPLGQGTEVTWAAILAGKSGIGRVTTFD
                     ASVDYACQVAGEVPRVDGRGGGGPDIPGSFDPDQTLSTRDQRRVDDFILYAIAAADEA
                     VKDSGWQPGEEDVEGRERTGVMIGSGIGGLATIERTSVELHEKGPRRVSPFFIPSALI
                     NLASGQVSIRYGFKGPNHSVVTACATGAHAIGDAARLIKYGDADVMLAGGAEAAICPV
                     GMAGFIAARAMSTNFNDTPEKASRPYDKDRDGFVMGEGAGVLMLEEYEHAKARGAKIY
                     AEVAGYGLAGDAFHITAPADDGDGGFRAMKAALKDAAVEMAEVDYINAHGTSTPLGDE
                     IELGAVTRLLGDAAGKATMSSTKSATGHLLGAAGAIEAAFSVLAIRDQIAPPTINLDN
                     PSVETVIDLVPNKAKPMKIDYALSNSFGFGGTNASVVFKKAP"
BASE COUNT          236 a          520 c          536 g          221 t
ORIGIN      
        1 gttgggcgca gcttaagcgc ctgattcggc ttaaggtttt cggaccgccg ggtcggggtt
       61 tcgccccgac ttcggcggtc ttcctttgag gaccgcgccc ttgaccacag ccgcccgccg
      121 agtcgtcgtc accggaattg gcctgatcac gccgctgggc caggggaccg aggtcacctg
      181 ggccgcgatc ctggctggga aatcggggat cggcagggtc accaccttcg acgcctcggt
      241 ggattatgcc tgccaggtgg cgggcgaagt gccgcgcgtg gacggccgcg gcggcggcgg
      301 gccggacatt ccgggctcct tcgaccccga ccagacgctt tcgacccgcg accagcgccg
      361 ggtggacgac ttcatcctct atgcgatcgc cgcggcggac gaggcggtga aggattccgg
      421 ctggcaaccg ggcgaggaag acgtcgaggg ccgcgagcgg accggtgtga tgatcggctc
      481 cggcatcggg ggcctggcca ccatcgagcg cacctcggtg gagctgcacg agaagggacc
      541 ccggcgggtc agcccgttct tcattccctc ggccctgatc aacctggcca gcggccaggt
      601 ctcgatccgc tatgggttca agggtccgaa ccactcggtg gtgaccgcct gcgccacggg
      661 cgctcacgcc attggcgacg cggcccggct gatcaagtac ggcgacgccg acgtgatgct
      721 ggctggcggg gccgaagcgg ccatctgccc cgtcggcatg gcgggcttca tcgcggcgcg
      781 cgccatgtcg acgaacttca acgacacgcc ggagaaggcc agccggccct atgataagga
      841 ccgcgacggc ttcgtcatgg gcgagggcgc cggcgtcctg atgctggaag agtacgagca
      901 cgccaaggcc cgcggcgcga agatctacgc cgaggtggcg ggctatggcc tggccggcga
      961 cgcctttcac atcaccgccc ccgccgatga cggcgacggc ggcttccgcg ccatgaaggc
     1021 ggctctgaag gacgccgccg tcgagatggc cgaggtggac tacatcaacg cccacggcac
     1081 ctcgacgccg ctcggcgacg agatcgagct gggggccgtg acgcggctgc ttggcgatgc
     1141 ggccggcaag gccaccatga gctccacgaa gtcggccacc ggccaccttc tgggcgcggc
     1201 cggggccata gaggcggcgt tctcggtgct ggcgatccgc gaccagatcg cgccgccgac
     1261 catcaatctc gacaatccgt ccgtcgagac ggtcatcgac ctcgtgccca acaaggccaa
     1321 gccgatgaag atcgactacg cgctgtccaa cagcttcggg tttggcggca ccaacgcttc
     1381 ggtcgtgttc aagaaggcgc cgtgagccga gggcccgccc gccgatcccc ggtcaggcga
     1441 tccgggggcg acgcccgcac ccgccgccgg ctgatgacgg cctacggcgc gctggcgacg
     1501 ctcggcgcgg cgc
//
LOCUS       DATAJL010000673         1949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_61913,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000673 DATAJL010000000
VERSION     DATAJL010000673.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61913"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1939)
                     /locus_tag="VHN39_12835"
     CDS             complement(<1..1939)
                     /locus_tag="VHN39_12835"
                     /inference="COORDINATES: protein motif:HMM:NF024589.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2817276.1"
                     /translation="MEVWQSACDDVIAHHGGAIVRTAGHGVLAYFGYPRADEEEAANA
                     VRAGLALSEAVRALDLPTGVAPRAQVGVATGLVVIGDLTSAGGGRETGVAGDTPNLAL
                     QLQGIAPPDGVVVSEATRRITEGLFVFSELGQQMLPGYDAPVPAFQATATTAVRTRSQ
                     ARLRNSQTSLFGRETELGQIFEAWALAQEGEGQVVLVEGEAGIGKSRLIDAFRAGLAG
                     TPVQSVWYCAPNYSDSALHPVAEQLARAAGFESDDAPESRRTKLGVLLDRYGVTRAEH
                     SAVLAELLGVPGEPGRLVLTPDKRKAVTLDALIRIMEQAARKNPAVFVIEDLHWADPT
                     TLEMLHHATRQAAEHPWLILATARPEFECGWSDHADVVHVQLSRLDAADAARICGELG
                     AAAVLPDDMVKQIVARSDGVPLFIEEITKAVLESMAGAPTASGAARVAIPNTLQDSLA
                     ARLDRLGSAKQVASLAAAIGRRFSYSLLAAVAPQPATELREALRALTRSGLLERTGVP
                     PSSNYLFKHALIRDAAYESLLKKERQALHGRIAAALREQRTDAQRAEPALLAYHLTES
                     GAIAEAIPVWVEAGQRAAAQAAHVEAASHLQTALDLLRGLPADPARDGEELQILLGLA
                     ISLAASRGHSVPEVAVALAEAR"
BASE COUNT          277 a          696 c          689 g          287 t
ORIGIN      
        1 cccgggcctc ggccagggcg acggcaacct ccggcactga gtggccgcga gaggccgcca
       61 ggctgatggc gaggccgagg aggatctgga gttcctcgcc gtcccgcgcc gggtcggccg
      121 gcagtccgcg cagaaggtcg agcgccgtct gcaggtggga agccgcctcg acgtgcgccg
      181 cctgcgcggc ggcgcgctgc ccggcctcga cccagaccgg gatcgcctcg gcgatcgcgc
      241 cgctttcggt gaggtgatag gccagcagcg ccggttccgc gcgctgggcg tccgtccgct
      301 gctcgcgaag ggcggcggcg atccgaccgt gaagcgcctg gcgctccttc ttcagcaggg
      361 actcataggc ggcgtcacgg atgagggcgt gcttgaagag gtagttgctg gagggcggca
      421 cgcctgttcg ctcgagcagg ccggagcggg tcagcgcccg cagggcctcc cgcaactcgg
      481 tggctggctg cggcgcgacc gccgcaagca ggctgtagct gaaccgccga ccaatcgcgg
      541 cggcaagact ggcgacctgc tttgccgacc ccaggcggtc caggcgcgcc gccagcgagt
      601 cctgtagtgt gttggggatc gccacccgcg ctgcgccgct cgccgtcggg gcgccggcca
      661 tggattcgag caccgccttg gttatctcct cgatgaacag cggcacgccg tcgctgcggg
      721 cgacgatctg cttgaccatg tcgtccggca gcacggccgc ggccccgagc tcgccacaga
      781 tgcgcgcggc atcggcggcg tccaggcggg acagttgaac gtgaacgacg tccgcgtggt
      841 ccgaccagcc gcactcgaac tccggccgcg ctgtcgcaag aatcagccac gggtgctccg
      901 cggcctgccg cgttgcgtgg tgcagcattt ccagcgtcgt ggggtccgcc cagtgcaggt
      961 cctcgatcac gaacaccgcc gggtttttgc gggccgcctg ctccatgatc cggatcaggg
     1021 cgtccagtgt gaccgccttg cgtttgtcag gcgtcagtac gaggcggccg ggctctccgg
     1081 gaacccccaa cagctcggcc aggactgcgg aatgctccgc tcgggtgacg ccgtaccggt
     1141 ccagcaggac gccgagcttg gtgcgacggc tctccggcgc gtcgtcggac tcgaaccccg
     1201 ccgcgcgcgc cagttgctcg gcgaccggat gaagggcgct gtcggagtag ttgggcgcac
     1261 agtaccagac gctctgaaca ggcgtgcccg ccaagccggc ccggaatgcg tcgatgagcc
     1321 gggacttgcc aatgccggcc tcgccctcga ccaacaccac ctgtccctcg ccctcttgcg
     1381 caagagccca ggcttcgaag atctgtccga gttccgtctc gcgcccgaag agtgaagtct
     1441 gcgaattccg caaccgcgcc tgcgagcgtg tgcggaccgc cgtcgtcgcg gtcgcctgga
     1501 acgccgggac cggcgcatcg taccccggca gcatctgctg gccgagctcg ctgaagacaa
     1561 acagcccctc ggtgatgcgc cgcgtcgcct cggacacgac caccccgtca ggcggggcga
     1621 tgccctgtag ctggagggcg aggttaggcg tgtcgccggc gacgcccgtc tcgcgcccgc
     1681 cgcccgcact cgtcaggtcg ccgatcacca ccagcccggt ggcgacgccc acttgcgcac
     1741 gcggggcgac gcccgtcggc agatccagcg cgcggacggc ttcgctgagc gcgaggccgg
     1801 cgcggacggc gttggcggcc tcctcctcgt cggcgcgggg atagccgaaa tatgcaagca
     1861 cgccgtgccc tgcggttctg acgatcgcgc caccgtggtg agcgatgacg tcgtcgcagg
     1921 cggactgcca gacctccatg acctgcaac
//
LOCUS       DATAJL010000674         2934 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_24750,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000674 DATAJL010000000
VERSION     DATAJL010000674.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2934)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2934)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2934
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24750"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..514)
                     /locus_tag="VHN39_12840"
     CDS             complement(<1..514)
                     /locus_tag="VHN39_12840"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEX2817277.1"
                     /translation="MNGVPQSFARADPMDRARRHIEANLEAPLSLGELADAAGLSPYH
                     FSRLFSGRYGFSPMAYVRVRRLEAAAEQLRSGPKTTLIDLALDCGFDSQEGFTRAFTR
                     LFGVSPGRYRGGGRSTSTEILAMDAHTLSNLTQAPAPARKPALRISGLSGVFSEHDKA
                     GIPLLWERLVK"
     gene            complement(594..1445)
                     /locus_tag="VHN39_12845"
     CDS             complement(594..1445)
                     /locus_tag="VHN39_12845"
                     /inference="COORDINATES: protein motif:HMM:NF012698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2817278.1"
                     /translation="MNPSAKIRIGAWCVDPAAGQMSRAGKVVRVEARTLRLLQDLADH
                     AGEVVSIDDLLDRVWSGVIVTPDSVYQAVASLRRLLGDDPRKPAYIATVPRLGYRLVA
                     PVAPWTDSPLAPRRGPRAWWVGAALAAVLALLGAVLVFGQIARARHAAAHAIASVGVL
                     QILDLTDTMDQEILVTEMTEGLIDRIGKNPRLRTPGPRSSYRLKGQHLSTVDAAKALG
                     VAYLLDWSVHSAGPRLRIETRLMRGDTGFIIWSQTYVRPPNEMFLVEDDIAGHVARSL
                     VPDPARR"
     gene            1602..2210
                     /locus_tag="VHN39_12850"
     CDS             1602..2210
                     /locus_tag="VHN39_12850"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX2817279.1"
                     /translation="MKPNLALAAVIAALVIPPAALSAVGGPEAVQAGVYVIDSKETLV
                     RYATLHMGLNEFWGTFPGATGTLTIDPAAVEAAKLDVTVPVASVETTNRELNGLFFSD
                     QFFDADKYPKMHFVSTRVTRTGERTAKVAGDLTMHGITKPILLDVTFNGAGPNAFSKV
                     LTLGFKGEGVVKRSDFGMGKYVPIVSDETTITFSVAFEQQKK"
     gene            complement(2232..>2934)
                     /locus_tag="VHN39_12855"
     CDS             complement(2232..>2934)
                     /locus_tag="VHN39_12855"
                     /EC_number="1.1.1.157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxybutyryl-CoA dehydrogenase"
                     /protein_id="HEX2817280.1"
                     /translation="IDDAAMKAALKHIQPAESLADIGTTDLAIEAATEDETLKKAIFK
                     ALGPHLSDTTLLASNTSSISITRLAAATDRPDRFIGLHFMNPAPLMKLVEIIRGIATG
                     PETYETAVQFAQSLGKTTANAEDFPAFIVNRVLVPMINEAIYTLYEGVGTVEAIDTAM
                     KLGANHPMGPLELGDFIGLDTVLSIMNVLYEGLADSKYRPCPLLTKYVEAGWLGRKAG
                     RGFYDYRGDVPVPTR"
BASE COUNT          461 a          957 c         1057 g          459 t
ORIGIN      
        1 gtttcacgag acgctcccac aggagcggga tgccggcctt gtcgtgttcg ctgaacaccc
       61 ctgagagtcc ggagatgcgc agggcgggct tcctggccgg cgccggcgcc tgggtcaggt
      121 tcgagagcgt gtgggcgtcc atggcgagga tctccgtgct ggtcgatcgc ccgccgccgc
      181 ggtagcggcc gggggagacg ccgaagagcc gggtgaaggc ccgggtgaag ccctcctgac
      241 tgtcgaagcc gcagtccagc gccaggtcga tcagggtggt tttcggcccg ctgcgcagct
      301 gttcggcggc ggcttccagg cgacgcacgc ggacataggc catggggctg aagccgtagc
      361 ggccggagaa caggcgcgag aaatgatagg gcgacaggcc ggcggcgtcg gcgagttcgc
      421 ccaggctgag cggcgcctcc agattggcct cgatatgccg ccgggcgcga tccatcggat
      481 cggcgcgggc gaaggactgg ggcaccccgt tcatgacccc atcatcgcgc ggcgccggct
      541 cgatgtcttg accggggttg ctgcgccgga gtccgcactc aatagcgaat gtcctatcgg
      601 cgcgcgggat cggggaccag cgagcgggcg acgtgcccgg cgatgtcgtc ctcgaccagg
      661 aacatctcgt tgggcgggcg cacgtaggtc tgcgaccaga tgatgaagcc ggtgtcgccg
      721 cgcatcagcc gggtctcgat ccgaagcctc gggccggcgg agtggacgga ccagtccagc
      781 aggtaggcga cgcccagcgc cttggccgcg tcgacggtgg agaggtgctg gcccttgagg
      841 cgataggagg accgggggcc gggcgtgcgc aggcgcgggt tcttgccgat cctgtcgatc
      901 aggccctcgg tcatctcggt gacgaggatc tcctgatcca tggtgtcggt gaggtccagg
      961 atctgcagca cgccgaccga ggcgatcgcg tgggcggcgg cgtgccgggc ccgggcgatc
     1021 tggccgaaga ccaggacggc gccgagcagg gccaggacag cggccagcgc cgcgccgacc
     1081 caccatgctc gcggcccgcg ccggggcgcc aaggggctgt ccgtccaggg cgccaccggc
     1141 gccaccaggc ggtagcccag gcgcgggacg gtggcgatgt aggcgggctt acgcggatcg
     1201 tcgcccagca ggcgccgcag cgaggccacc gcctggtaga ccgagtccgg ggtgacgatg
     1261 acgccggacc acacccggtc gagcaggtcg tcgatgctga ccacctcgcc ggcgtggtcc
     1321 gccaggtcct gcaacagccg cagggtccgc gcctcgacgc ggaccacctt gcccgcccgc
     1381 gacatctgac cggcggccgg gtcgacgcac caggcgccga tcctgatctt ggctgaaggg
     1441 ttcatgccgc ccggtatcgc ccttgagtct gccgcccgcc aaacgacggt tcaaaagtct
     1501 tcagagcttt tcagccgcgg gtcaggactt caagcggcgt gggccaacaa gctcggccct
     1561 tggcgggcgt ttccgcgcgc ctcgaaccct caaaggatcc catgaagccc aacctcgccc
     1621 tcgccgccgt gatcgcggcg ctcgtcattc cgcccgcggc cctgtccgcg gtgggcggtc
     1681 ccgaagccgt gcaggccggc gtctatgtca tcgacagcaa ggagaccctg gtccggtacg
     1741 cgaccctgca catgggcctc aacgagttct ggggcacctt cccgggcgcg accgggacgc
     1801 tgaccattga cccggcggcg gtcgaggcgg ccaagctcga cgtcaccgtg ccggtggcca
     1861 gcgtcgagac cacgaaccgg gagctcaatg gcctgttctt ctccgatcag ttcttcgacg
     1921 ccgacaagta tccaaagatg cacttcgtct cgacgcgggt gacgcgcacg ggcgagcgga
     1981 ccgccaaggt ggccggcgac ctgacgatgc acgggatcac caaacccatc ttgctcgacg
     2041 tcaccttcaa cggcgccggg cccaacgcct tcagcaaggt gctgacgctc ggcttcaagg
     2101 gcgagggcgt ggtgaagcgg tccgacttcg gcatggggaa atacgtgccg atcgtcagcg
     2161 acgagacgac gatcaccttc agcgtcgcct tcgagcagca gaagaagtga gctggtgggc
     2221 cgggccggcc cctaccgcgt cggaaccggc acgtccccgc ggtagtcgta gaagccgcgg
     2281 ccggccttgc ggcccagcca tccggcctcg acgtacttgg tgagcagcgg acaggggcgg
     2341 tatttggaat ccgccaggcc ctcgtagagc acgttcatga tcgacagcac cgtgtcgagg
     2401 ccgatgaagt cgcccagctc cagcggcccc atcggatggt tggcgcccag cttcatggcc
     2461 gtgtcgatcg cctcaaccgt gccgacgcct tcgtagaggg tgtagatcgc ctcgttgatc
     2521 atcggcacca gcacgcggtt gacgatgaag gccgggaagt cctctgcgtt ggcggtggtc
     2581 ttgcccagcg actgggcgaa ctggacggcg gtctcgtagg tctcgggacc cgtcgcgatg
     2641 ccgcggatga tctccaccag cttcatcagg ggcgccgggt tcatgaagtg caggccgatg
     2701 aaccggtcgg gccggtcggt ggcggccgcc aggcgggtga tcgagatcga ggaggtgttg
     2761 gaggccagga gcgtggtgtc ggagaggtgc ggccccagcg ccttgaagat cgccttcttg
     2821 agggtttcgt cctcggtcgc cgcctcgatg gccaggtcgg tggttccgat atcggccagg
     2881 gattcggcgg gctggatatg tttcagcgcc gccttcatgg ccgcatcgtc gatg
//
LOCUS       DATAJL010000675         2506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38045,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000675 DATAJL010000000
VERSION     DATAJL010000675.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2506
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38045"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VHN39_12860"
     CDS             complement(<1..195)
                     /locus_tag="VHN39_12860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817281.1"
                     /translation="MLAFTKAEEAVMKLSGQISIELTVDDFVAAADHQRRLEGLLRLI
                     RDSYPDATLAMRERRERKELA"
     gene            361..1470
                     /locus_tag="VHN39_12865"
     CDS             361..1470
                     /locus_tag="VHN39_12865"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX2817282.1"
                     /translation="MDSAPSQPHISARAGKRPLIDRYLAANFATWLVTFGLTSVRSLG
                     MDTPLPQLINMGVRRAIVCLLCVGVSMLIQRALLASRGWPWGRRIALAAGLSVAGTIA
                     WTLINHTAFYVVAPFSPLEGSVKDILVGWAFNLTVMVWSFIAWCAIVLALSYDEEARE
                     KSLRLVEAQALAAESQNQMLRNQINPHFLFNTLNALSSLILQKDFDRAERMVLSLSNF
                     LRASLEKAPSDKITLAEELGVQRQYLAIEQERFGDRLVLSETLPAGLQNALVPGLILQ
                     PLIENAVKYGVARTTRPVTVEIIAEIRGDERLAVTVRDDAVPDTSSQPQTLGVGLENV
                     RRRLAVLYGASGVLTAGPRPGGGFAATVELPLEQR"
     gene            1470..2327
                     /locus_tag="VHN39_12870"
     CDS             1470..2327
                     /locus_tag="VHN39_12870"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX2817283.1"
                     /translation="MAALRVLIVDDEPLARRRLEILLREQAGVELVGAAADGFAARRM
                     IAELSPEVVLLDIKMPGLTGLEVLDALGAERGGPESRETGVPIVIFVTAFDRFALDAF
                     ERAAFDYLLKPVEPARLSASLARAREALGERAAAERVQELEEVLRNLRSGPTPGLAAA
                     GPAVGAPDSAPTREAWAREIWIQERGGRTSLPVAAIDWVAAERDYVRIHTAGRSFLIR
                     QSIGALAARLDPVVFLRVHRSSLVRADRIVRIRHASGRGAVMLSTGAEIAVSRRHMGA
                     LKAITKSQV"
     gene            complement(2330..>2506)
                     /gene="mmcB"
                     /locus_tag="VHN39_12875"
     CDS             complement(2330..>2506)
                     /gene="mmcB"
                     /locus_tag="VHN39_12875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair putative endonuclease MmcB"
                     /protein_id="HEX2817284.1"
                     /translation="REILPEEPGLIVADGFGGAVLREAAVAPLAGARRKALTLAFARL
                     AALRAAGVPAVELE"
BASE COUNT          368 a          875 c          873 g          390 t
ORIGIN      
        1 ggccagctcc ttgcgctcgc ggcgttcgcg catggccagc gtcgcgtcgg gatagctgtc
       61 gcggatcagc ctcaagaggc cctccagccg gcgctggtgg tcggccgcgg cgacgaaatc
      121 gtcgacggtg agttcgatgg agatctgccc gctgagcttc atgaccgcct cctccgcctt
      181 agtgaacgcc agcatcgggg tgctcgcgcg gacgatcacg ccgtattcga cgaaggttgc
      241 ggatcgcgag gccaactgca gtcagtgctg caaacggcct atttcccacg acgaacggcg
      301 tcgcctcgcg agtccggttg gcctagtctg gcgacgatct caacggcgcg gaggcgtccc
      361 ttggacagcg ctcccagcca accgcacatc tccgcgcgag cgggcaagcg gccgctgatc
      421 gatcgctatc tggcggccaa tttcgccacc tggctggtga ccttcgggct cacctcggtg
      481 cggtcactcg gcatggacac gcccctgccg cagctgatca acatgggcgt gcggcgggcg
      541 atcgtctgtc tgctgtgcgt cggggtcagc atgctgattc agcgcgcgct cctggccagc
      601 cggggctggc cgtggggacg gcggatcgcg ctggcggcgg gcctgtcggt ggcgggcacg
      661 atcgcctgga ccctgatcaa ccacaccgcc ttctatgtgg tggcgccctt ctccccgctc
      721 gagggcagcg tcaaggacat cttggtgggc tgggctttca acctgactgt gatggtgtgg
      781 tcgttcatcg cctggtgcgc gatcgttctg gccctcagct acgatgagga ggcgcgcgaa
      841 aagagcctga gactggtcga ggcccaggcc ctggccgccg agagccagaa ccagatgctc
      901 cgcaaccaga tcaatccgca tttcctgttc aacacgctca acgcgctctc ctccctgatc
      961 ctgcagaagg acttcgaccg ggccgagaga atggtgctgt cgctctccaa cttcctgcgc
     1021 gcctccctgg aaaaggcgcc cagcgacaag atcaccctcg ccgaggagct gggcgtgcaa
     1081 cgccagtacc tggccatcga gcaggagcgg ttcggcgacc ggctggtcct cagcgaaacc
     1141 ctgccggccg gcctgcagaa cgcgctcgtt ccaggcctga tcctgcagcc gctgatcgag
     1201 aacgcggtga agtatggcgt ggcccgcacg acccggccgg tgacggtgga gattatcgcc
     1261 gagatacgtg gggacgaacg cctggcggtg acggtgcgcg acgatgcggt ccccgacacc
     1321 tccagccagc cgcagaccct gggcgtcggg ctggagaacg tccgccggcg gctggccgtg
     1381 ctctatggcg ccagcggtgt gctcaccgcc ggaccgcggc caggcggcgg gttcgccgcc
     1441 accgtcgagt tgccgctgga gcagcgctga tggccgccct gcgggtgctg atcgtcgacg
     1501 atgagcccct ggcccggcga cggctggaaa tcctgctgcg cgagcaggcg ggggtggagc
     1561 tggtgggcgc cgccgccgac ggcttcgcgg cccgccggat gatcgccgag ctgtcccccg
     1621 aggtggtgct gctggacata aagatgccgg gactgaccgg cttggaggtg ctggacgcgc
     1681 tgggcgccga aagagggggc ccagaatctc gcgagacggg cgtgccgatc gtcattttcg
     1741 tcaccgcctt cgaccgcttc gctctggacg ccttcgagcg cgcagccttc gactatctcc
     1801 tgaagcccgt cgagcccgcc cgcctgagcg cctccctggc ccgggcccgc gaggcgctgg
     1861 gcgagcgcgc cgccgcggaa cgggtgcagg agctggagga agtgttgcgc aacctgcgca
     1921 gcgggccgac gcccggtctg gcggcagcag ggccagccgt gggcgcgccg gacagcgccc
     1981 ccacgcggga ggcctgggcc cgggagatct ggatccagga gcgcggcggc cgcaccagcc
     2041 tgccggtggc ggccatcgac tgggtggcgg ccgagcgcga ctacgtccgt atccacaccg
     2101 caggccgcag cttcctgatc cgccagtcga tcggtgcgct ggccgcacgg ctcgatccgg
     2161 tggtgttcct gcgtgttcac cgctccagcc tggtccgcgc tgaccgcatc gtgcgcatcc
     2221 gccatgcctc aggccgcggc gccgtcatgc tctccaccgg tgccgagatc gcagtctcgc
     2281 ggcggcacat gggcgccctg aaggcgataa ccaagtcgca ggtctagacc tactccagct
     2341 ccaccgccgg aacccctgcg gcccggagcg ccgccaggcg tgcgaaggcc agggtcagcg
     2401 ccttgcgccg ggcgccggcc aagggcgcca cggcggcctc gcgcagcacc gccccgccaa
     2461 aaccgtcggc gacgatcagg cccggctcct ccggcaggat ctcgcg
//
LOCUS       DATAJL010000676         5405 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_83770,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000676 DATAJL010000000
VERSION     DATAJL010000676.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5405)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5405)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5405
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83770"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..457)
                     /locus_tag="VHN39_12880"
     CDS             complement(26..457)
                     /locus_tag="VHN39_12880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucR family transcriptional regulator"
                     /protein_id="HEX2817285.1"
                     /translation="MSVGPDPEGPSGEDLLRLSTGVVAAYVSRNAVAADAVPDIIRTV
                     HQALEGLARDGVPALEVRPKPAVSIGRSVQHDFIVCLEDGKKLKMLKRYLRSRYGLSP
                     DEYRKRWGLAADYPMVAPAYAARRSDFAKKIGLGRGVRRGK"
     gene            668..1951
                     /gene="glyA"
                     /locus_tag="VHN39_12885"
     CDS             668..1951
                     /gene="glyA"
                     /locus_tag="VHN39_12885"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEX2817286.1"
                     /translation="MQAQSSADGFFTSGVAQADPDLSRILDAELKRQQDQIELIASEN
                     IVSRAVLEAQGSVLTNKYAEGYPGRRYYGGCEVVDEAEELARDRAKRLFDCEFVNVQP
                     HSGSQANQAVFMATMAPGDTFMGMDLSAGGHLTHGKSINQSGKWFRPVAYSVRQQDQL
                     IDYDQAWEVARAEKPKVIIAGASAYSRTIDFEQFRAIADEVEAVLMVDIAHYAGLVAG
                     GVYPNPFPHAHIVTTTTHKTLRGPRGGMIMTNSKKWAKKIDSAVFPGLQGGPLMHVIA
                     AKAVAFGEALRPEFKVYAKNVIENARALADSLQTAGFKIVSNGTDSHMMLVDLTPKSV
                     NGADAEIALERAGITTNKNGIPFDPLPPMLSSGLRVGSPAGTTRGFGPAEFRQVGAWI
                     GEVLDGVAAGGDNSAVEAKVRSEVLALTARFPIYN"
     gene            1984..2457
                     /gene="nrdR"
                     /locus_tag="VHN39_12890"
     CDS             1984..2457
                     /gene="nrdR"
                     /locus_tag="VHN39_12890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HEX2817287.1"
                     /translation="MRCPFCGHLESQVKDSRPSEDGAAIRRRRLCPECGGRFTTFERV
                     QLRELTILKRSGRRTPFERDKLARSIAVAIRKRPIDPERVERMISSIVRQLESMGETE
                     LPSSAVGELVMTQLKALDDVAYVRYASVYRDFRETQDFAKFLGEEGLAEAAEDEA"
     gene            2461..3105
                     /locus_tag="VHN39_12895"
     CDS             2461..3105
                     /locus_tag="VHN39_12895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RibD family protein"
                     /protein_id="HEX2817288.1"
                     /translation="MPVTLKLATSLDGRIATAAGLSRWITGEAAREAVHMLRAEHDAV
                     LVGISTALSDDPELTVRLPGYAGSQPARVVLDSTQRLSPFSKLAKTARANPTYVIATT
                     EPDPALIAAGVRVLRVGAVDGERPDLKTVVAALASEGLSRLFVEGGGQVAASFVRAGL
                     VDALEWFRAPVLIGGEGRPAVGELAVATLAEAPHFRRTEIREVGDDLWERYEKA"
     gene            3106..3696
                     /locus_tag="VHN39_12900"
     CDS             3106..3696
                     /locus_tag="VHN39_12900"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003164745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEX2817289.1"
                     /translation="MFTGIITDVGRVRDVRETNRDRRFEIETGFDTVTLEIGASVCHA
                     GCCLTVVEKGSGWFAVEVSGETLSLTTLSDWTKGCAVNLERAARVGDELGGHIVSGHV
                     DGVGEVLSVESEGGSHRVRIRAPKPLHRLIAPKGSITVEGVSLTVNEVEDDIFGVNLI
                     PHTWDVTTLGELKAGSRVNLEIDMLARYLARWRETA"
     gene            3727..4170
                     /locus_tag="VHN39_12905"
     CDS             3727..4170
                     /locus_tag="VHN39_12905"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006274267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEX2817290.1"
                     /translation="MSEDQVRILIVEARFYSDLADELLKGAQDALEAFGAAYDVVTVP
                     GALEIPAAIALAEEGGRYDGYVALGAVIRGETYHFEIVANESARGLMDLSVSKLLCLG
                     NGILTVEDEAQAWARARASEGDKGGGAARAALTMVSLRQQLLIGL"
     gene            4171..4626
                     /gene="nusB"
                     /locus_tag="VHN39_12910"
     CDS             4171..4626
                     /gene="nusB"
                     /locus_tag="VHN39_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEX2817291.1"
                     /translation="MTGPPKQARSVARLAAVQALYQMEVSSVGAEAVIREFSEHRFDR
                     DAEDGENPLATADEPFFADLVRGVVEHQKAVDAAVAKKLATGWRLDRLDATARAILRA
                     GAYELIHRPDVPIEVVIDEYVELAKSFFEGPEPGFVNGALDAVAQDARP"
     gene            4643..5405
                     /gene="thiL"
                     /locus_tag="VHN39_12915"
                     /pseudo
     CDS             4643..5405
                     /gene="thiL"
                     /locus_tag="VHN39_12915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919238.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
BASE COUNT          853 a         1802 c         1911 g          839 t
ORIGIN      
        1 ggcgattgtg tgaatgcggc atgggctact tcccgcgccg gacgccgcgt cccaggccga
       61 tcttcttggc gaagtcggag cgccgcgcgg cataggccgg cgccaccatg gggtagtcgg
      121 cggccaggcc ccagcgcttg cggtattcgt ccgggctcag gccatagcgc gagcgcaggt
      181 agcgcttgag catcttcagc ttcttgccgt cctcgagaca gacgatgaag tcgtgctgca
      241 cgctgcggcc gattgagacg gcgggcttcg gtcgaacctc aagggccgga accccgtcgc
      301 gggcgagccc ttccagggct tggtggaccg tgcggatgat gtcggggacc gcgtccgcgg
      361 cgacggcgtt gcggctcacg taggcggcga cgacacccgt gctgagccgc agcaggtctt
      421 cacccgaggg tccctcgggg tccggtccaa cgctcatgca aatccccctt gactggatcc
      481 gacaccgacc ccgaccgtgg tgaaacctgc acgacgggtg aatggtcaac gccacggtca
      541 gaagattgtt cccgcgccgc gcgcgcgaag tgaggccgat gtggaggcgg gagcggtttg
      601 ggggtaaaga gcgctctccg ccgctccaga ctcgtcagcc cgaaaggcgc cgcccttgac
      661 gctccacatg caagctcagt cctccgcaga cggtttcttc acctccggcg tcgcccaggc
      721 cgatccggac ctctcgcgca ttctcgacgc cgagctgaaa cgccagcagg accagatcga
      781 gctgatcgcg tccgagaaca tcgtctcgcg cgccgtgctg gaggcgcagg gcagcgtgct
      841 cacgaacaag tacgccgagg gctatccggg caggcgctac tatggcggct gcgaggtggt
      901 ggacgaggcc gaggagctgg cccgcgatcg cgccaagcgc ctcttcgact gcgagttcgt
      961 caatgtacag ccgcactccg gcagccaggc gaaccaggca gtgttcatgg ccacgatggc
     1021 gcctggcgac accttcatgg gcatggacct gtcggccggt gggcacctga cccacggcaa
     1081 gagcatcaac cagtctggca agtggttccg cccggtggcc tacagcgtgc gccagcaaga
     1141 ccagctgatc gactatgacc aggcctggga ggtcgcccgg gccgaaaagc ccaaggtgat
     1201 catcgccggc gcctcggcct attcgcggac catcgacttc gaacagttcc gcgccatcgc
     1261 cgacgaggtg gaggccgtcc tgatggtgga catcgcccac tatgcgggcc tggtggccgg
     1321 cggggtctat ccgaacccgt tcccgcacgc ccacatcgtc accaccacca cccacaagac
     1381 cctgcgcggc ccacgcggcg gcatgatcat gaccaattcc aagaagtggg cgaagaagat
     1441 cgacagcgcg gtcttccccg gcctgcaggg cggtcccctg atgcatgtga tcgccgccaa
     1501 ggccgtggcc ttcggcgagg cgctgcgccc cgagttcaag gtctacgcga agaacgtcat
     1561 cgaaaacgcc cgcgcgctcg ccgacagcct gcagaccgcc ggcttcaaga tcgtctccaa
     1621 cggcaccgac agccatatga tgctggtgga cctgacgccg aagagcgtga atggggccga
     1681 cgcggagatc gcgctggagc gcgccgggat caccacaaat aagaacggca ttcccttcga
     1741 tcccctgccg ccgatgctga gctcgggcct cagggtcggc tcgcccgcgg gcaccacccg
     1801 cggtttcggc ccggccgagt tccgccaggt gggcgcctgg atcggcgaag tgctggatgg
     1861 ggtggcggcc ggcggcgaca attcggcagt cgaggccaag gtccgttcgg aggtcctggc
     1921 cttgacggcg cgcttcccaa tctacaactg attgggggtc gataggccga agggggccag
     1981 atcatgcgct gcccgttctg cggtcatctc gaaagtcagg tcaaggacag ccgaccgtcg
     2041 gaggatggcg ccgcgatccg ccgccgccgc ctctgccccg aatgcggcgg gcggttcacc
     2101 accttcgaac gcgtccagtt gcgcgaactg accatcctga agcgctcggg ccggcgcacg
     2161 ccgttcgaac gcgacaagct tgcccgctcc atcgccgtcg ccatccgcaa acgccccata
     2221 gatccggagc gggtcgagcg gatgatttcc tcgatcgtcc gccagctgga aagcatgggc
     2281 gagaccgagc tgccgtcctc ggcggtgggc gagctggtga tgacccagct caaggccctc
     2341 gatgacgtgg cctacgtccg ctacgcctcg gtctaccgcg acttccgcga gacccaggac
     2401 ttcgccaagt tcctcggcga ggaaggcctg gccgaggccg ccgaagacga ggcctaggcc
     2461 ttgcccgtca ccctgaagct cgccacctcg ctggacggcc ggatcgccac ggcggcgggc
     2521 ctcagtcgct ggatcaccgg tgaggcggcg cgcgaagccg tccacatgct gcgcgccgag
     2581 cacgacgctg tgctggttgg catctcgacc gccctctcgg acgatcccga actgacggtg
     2641 cgcctgccgg gctatgcggg gtcgcagccg gcgcgggtgg tgctggacag cacgcagcgg
     2701 ctgtcgccct tcagcaagct cgcgaagacc gcacgcgcta acccgaccta cgtcatcgcc
     2761 accaccgagc cggatccggc gctgatcgcg gccggcgtgc gggtgctgcg ggtgggcgcg
     2821 gtggacggcg agcgcccgga cctgaagacc gttgtggcgg ctctggcgag cgagggcctg
     2881 tcgcggctct tcgtcgaggg cggcggccag gtggcggcga gtttcgtccg cgccgggctg
     2941 gtggacgccc tggagtggtt ccgcgccccg gtgctgatcg gtggggaggg acgccccgcg
     3001 gtgggcgaac tggcggttgc gacgctcgcc gaagcgcccc acttcaggcg caccgagatc
     3061 cgcgaggtcg gcgacgacct ttgggaacgc tatgagaagg cctgaatgtt caccgggatc
     3121 attaccgacg tggggcgcgt gcgcgatgtg cgcgagacca accgcgaccg ccggttcgag
     3181 atcgagacgg gtttcgacac ggtcacgctt gagatcggcg cgtcggtctg ccacgccggt
     3241 tgctgcctga cggtcgtgga gaaaggctcg ggctggttcg ccgtggaggt gtcgggggaa
     3301 accctgtcgc tcaccaccct cagcgactgg accaagggct gcgccgtcaa cctggaacgg
     3361 gcggcccgcg tcggcgacga gctgggcggc cacatcgtct ccggccacgt ggacggcgtc
     3421 ggtgaggtgc tgtcggtgga gagcgagggc ggctcgcacc gggtgcgcat ccgtgcgccg
     3481 aagccactgc accgcctgat cgcgccgaag ggctcgatca cggtcgaggg cgtgtccctg
     3541 accgtcaatg aggtcgagga cgacatattc ggggtgaacc tgatcccgca cacctgggac
     3601 gtcaccacgc tcggcgagct taaagccggg agccgggtga acctggagat cgacatgctg
     3661 gcgcgctatc tcgcccgctg gcgcgaaacg gcctaaggct gcgcctcata tgcagaaggg
     3721 gtcccgatga gtgaagacca agtccgcatc ctgatcgtcg aggcgcggtt ctattccgac
     3781 ctcgccgatg agctgctgaa gggcgcccag gatgcgctgg aggcgttcgg ggcggcctat
     3841 gacgtcgtga cggtgccggg cgcgttggag atcccggcgg cgatcgcgct ggcggaggag
     3901 ggcggccgct acgacggcta tgtggcgctc ggcgcagtga tccgcggcga gacctatcac
     3961 ttcgagatcg tggccaatga atccgcgcgc ggcctgatgg acctgtcggt cagcaagctg
     4021 ctctgcctcg gcaacggcat cctgacggtc gaggacgaag ctcaggcctg ggcgcgggct
     4081 cgcgccagcg agggcgacaa gggcggcggc gcggcgcgcg cggcgctgac catggtctcg
     4141 cttcgccagc agttactgat cggcctctag atgaccggtc ccccgaagca ggcccgctcc
     4201 gtcgcgcgcc tggccgccgt acaggcgctc tatcagatgg aggtctccag cgtgggggcc
     4261 gaggcggtca tccgtgaatt ctccgagcac cgcttcgacc gcgacgccga ggacggcgaa
     4321 aacccactgg ccacggccga cgagcccttc ttcgccgatc tggtgcgggg cgtggtcgaa
     4381 caccagaagg ccgtcgacgc cgcggtcgcc aagaagctgg ccaccggttg gcggttggac
     4441 cgcctcgacg ccaccgcccg cgccatcctg cgggctggcg cctatgagct gatccatcgt
     4501 ccggacgtgc ccatcgaggt ggtgatcgac gaatatgtcg agctggcgaa atccttcttc
     4561 gaggggcccg agccggggtt cgtgaacggc gcgctggacg cggtggccca ggatgcccgg
     4621 ccgtaaacct tcaggggggg atgagttttc agagatcgcg cggctgttcc gccccctgac
     4681 gggcggggcg gcgggcgcgt tcgatctgct ggatgacgcc gccgtggtgc cgcagcgccc
     4741 gggcttcgac ctggtggtca ccaaggacgc catggtcgag ggtgtgcatt tcctggtggg
     4801 cgaagcgccc gacctgatcg cccgcaaact gctgcgagtg aacctctccg acctggcggc
     4861 caaggccgcc gagcccttcg gctgcttcct ggctgtggcc tggacgccgg ccttcgggcc
     4921 cgccgagcgg gaagccttcg ccaagggact gggagaggat ctggcggcct atggcgtggc
     4981 tctgctgggg ggcgacacgg tctcgacgcc cggtccgttc gtggtcagcc tgacggcgct
     5041 gggctgggtt ccggcgggtg gcatggtccg ccgcgcaggc gcccagctcg gcgatgtgat
     5101 cgcggtcagc ggcacgattg gcgacggcgc gctggggctc gcggcggtga ggggggagat
     5161 cgccgatccc gatggctggg ccgcaggccg cctgcggctg cccaccccac ggctggcgtt
     5221 atgcgaggcg cttcgcgaac atgcccacgc cgccgccgac atctccgacg gcctgatcgc
     5281 tgacaccggc catatcgccg aggccagcgg gctcggcatc acgctcaacc tggacgagat
     5341 gccgctctcg ccagtggctg aggcttggct ggacgaacaa tccgatcgcg ccgcggccct
     5401 ggtgc
//
LOCUS       DATAJL010000677         2322 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_50843,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000677 DATAJL010000000
VERSION     DATAJL010000677.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50843"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..877
                     /locus_tag="VHN39_12920"
     CDS             <1..877
                     /locus_tag="VHN39_12920"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="isomerizing glutamine--fructose-6-phosphate
                     transaminase"
                     /protein_id="HEX2817292.1"
                     /translation="DLPVDVEIASEFRYREPALRAGMLAIGMSQSGETADTLAALRLC
                     HAKGLKTAAVVNATESTMAREVDVVWPIHCGPEIGVASTKAFTAQISVLTALAVGAAR
                     ARGKIDAAEEQRLIHVLLGAPRLIAESINLEDAVKAVAVEISKARDVLFLGRGPMYPL
                     ALEGALKLKEISYIHAEGYAAGELKHGPIALVDENTPIVILAPFDSYFEKSASNMSEV
                     MARGGQVVFITDPEGQQHAPAGARVVVTAPRCDPLIAPLVMAAPIQLLAYYVAVQKGA
                     DVDQPRNLAKSVTVE"
     gene            complement(948..1226)
                     /locus_tag="VHN39_12925"
     CDS             complement(948..1226)
                     /locus_tag="VHN39_12925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817293.1"
                     /translation="MNMRIITSVAVAAGLALSLSACAKKADDAATTTTTTATDSAAPA
                     AATPPAADASATAPAAPAADAATTTTTTTPAAAAPPATSSMSTTTTKK"
     gene            1417..2286
                     /locus_tag="VHN39_12930"
     CDS             1417..2286
                     /locus_tag="VHN39_12930"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009225 - nucleotide-sugar metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="HEX2817294.1"
                     /translation="MSKRVRKAVLPVAGMGTRVLPGAKTTPKNLLNVVDRPILSYVVE
                     EARAAGIEHFVFIVGRGQGAIEDYFDRQPEIEDALEAKGRTEILADVRRDLGKPGQMS
                     FIRQMAPLGLGHAVWCARDVIGEEPFAVMLPDMLMAAERSPLGQAVDAYEKVGGNIVV
                     VEPAPEGQTHKYGIVALEGQNGRLNRMTGMVEKPPLGTEPSNLFISGRYILQPEIFDI
                     LETLGRGAGGEIQLTDGMVSLMKSQDFHALEYEGTTYDCGDKIGLLRANVAFALARPD
                     LADEARAAILALL"
BASE COUNT          380 a          743 c          824 g          375 t
ORIGIN      
        1 cgatctgccg gtggacgtcg agatcgcgtc tgagttccgt taccgggagc cggcgctccg
       61 ggccgggatg ctggccatcg gcatgtcgca gtccggcgag acggccgaca cgctggcggc
      121 gctgcgcctg tgccacgcca agggcctgaa gaccgccgcg gtggtgaacg ccaccgaatc
      181 gaccatggcc cgcgaggtcg acgtggtctg gccaatccac tgcgggccgg agatcggggt
      241 cgcctcgacc aaggccttca cggcccagat cagcgtgctg acggcgctgg cggtcggcgc
      301 ggcccgggcg cgcggcaaga tcgacgccgc cgaggagcag cggctgatcc atgtgctgct
      361 gggcgcgcca aggctgatcg ccgaatcgat caacctggaa gacgcggtga aggcggtggc
      421 ggtcgagatc tcaaaggctc gcgacgtgct cttccttggc cgcggaccga tgtatcccct
      481 ggcgctggaa ggtgccttga aactcaagga aatcagctac atccatgccg agggctatgc
      541 cgccggcgag ctgaagcatg ggcccatcgc gctggtcgac gaaaatacgc cgatcgtcat
      601 cctggcgccc ttcgacagct atttcgagaa gtcggcctcg aacatgagcg aagtcatggc
      661 ccgcggcggc caggtggtgt tcatcaccga tccggaaggc cagcagcacg cgccggccgg
      721 agcccgcgtc gtggttacgg cgcccaggtg cgacccgctg atcgcgcccc tggtgatggc
      781 cgccccgatc cagcttctgg cctattacgt ggccgtccag aagggcgcgg acgtcgacca
      841 gccgcgcaac ctggccaaat cggtcactgt cgagtagcgg cccaatagca aacggccgcc
      901 ccgtgagggg cggccgcgct tagtccaaaa cccagagggt cctaaactta cttcttggtg
      961 gtggtcgtgc tcatcgagct cgtggccggc ggagcagcgg cggccggagt cgtcgtcgtc
     1021 gtcgtggtcg cggcgtcggc ggccggggcg gccggagcag tcgcggaagc gtcggcggcc
     1081 ggcggggtcg cggcggcagg agcggccgaa tcggtcgcgg tcgtggtggt ggtcgtggcc
     1141 gcgtcgtcgg ccttcttggc gcaggcggac aggctcaggg ccagaccggc ggcgacagcg
     1201 acggaagtga tgatacgcat gttcatggaa ttgctcccct ggaggactat ggaggacgat
     1261 cccccgacaa tgggcgactc ttacacggct tcgtgaattc ccgaaatcgt gatcgtacgt
     1321 ccgatgcgat ttttcgtcgc acgggctgtg gatttcaagt cttacctcct ctagtgcggc
     1381 cgtaagacgg cggcgggacc gcccggcggg ggacgaatga gcaagcgcgt gcgcaaggcg
     1441 gtgctgccgg tggcgggcat gggaacccgg gtgctgcccg gggccaagac cacgccgaag
     1501 aacctcctga atgtcgtcga ccggccgatc ctgtcctatg tggtcgagga ggcccgcgcc
     1561 gccggcatcg agcattttgt ctttatcgtc ggccgcggcc agggcgccat cgaggactat
     1621 ttcgaccgcc agccggagat cgaggacgcc ctggaagcca agggcaggac cgagatcctg
     1681 gccgatgtgc gccgcgatct gggcaagccc ggccagatga gcttcatccg ccaaatggcg
     1741 ccgctcggcc tcggccacgc ggtctggtgc gcccgcgacg tgattggcga ggagcccttc
     1801 gcggtcatgc tgccggacat gctgatggcc gccgaacgct cgccgttggg ccaggcggtc
     1861 gatgcctatg agaaggtcgg cggcaatatc gtcgtcgtgg agccggcgcc ggagggccag
     1921 acgcacaagt acggcatcgt ggcgcttgag ggccagaacg gccggctgaa ccgcatgacc
     1981 ggcatggtcg agaagccgcc gctggggacc gagccctcga acctgttcat ctcgggccgc
     2041 tacatcctgc agccggaaat cttcgatatc ctggagacgc tgggccgcgg cgctggcggc
     2101 gagatccagc tcaccgatgg catggtgagc ctgatgaaaa gtcaggattt ccacgccctt
     2161 gagtacgagg ggacgaccta cgactgcggc gacaagatcg gcctgttgcg cgccaacgtc
     2221 gccttcgcgc tcgcccgtcc cgacctcgcc gatgaagccc gcgcggcgat cctggcgctg
     2281 ctttagcggc cggtggccag ccgtcgcctc ctcgtcttcg gc
//
LOCUS       DATAJL010000678         1913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62005,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000678 DATAJL010000000
VERSION     DATAJL010000678.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62005"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..835
                     /locus_tag="VHN39_12935"
     CDS             <1..835
                     /locus_tag="VHN39_12935"
                     /inference="COORDINATES: protein motif:HMM:NF015803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HEX2817295.1"
                     /translation="LSAAYGESRPGDTLKPLNLKSTSVVAEAEAGYPLIRRRRLNLNV
                     AGGFDFINQETDAGGATGPLTQDRLRVAYLRTDGDLRTFAFDRTFLISGGLTLRKGLS
                     GLGASDAGSSLLTRSLATPDAWLVRGNGSVDARVAGPVSASLRMQAQYASKPLMPYEQ
                     ISLGDLSTGRGYDPAAVLGDSGLSASFDLRYSAIQLNPKVLAAPYVFFDVGSVHNNNA
                     AQSGLTPNRTLRSFGAGVLLRLANRANLEITYARPIDSVTAGGERPAPRLLINLTASF
                     L"
     gene            852..>1913
                     /locus_tag="VHN39_12940"
     CDS             852..>1913
                     /locus_tag="VHN39_12940"
                     /inference="COORDINATES: protein motif:HMM:NF017658.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEX2817296.1"
                     /translation="MTRSGTPSTVRDRAGARRLSRDLWNRTALCGALVGVVSSFTTPA
                     MALPVLANMQSQVSVSGEGPSSVGRPGGVELDITLHAPRTVIDWSSYDVAAGEKVSYA
                     FNARNWIVLNRINEATPPTINGIVEGRVNGAYGGNIWFASRNGMIFGPGARVDAGGIL
                     VTTASPGPDDVQRFLDPNNLTFNFSGEDVADGAMIAMQAGSSINGHGGLVALIAPTIV
                     TEAGSSVTGLNGSDVLYGVTTGYQLRLAQGAPGDFDLVDFLIPSTEAGSGSTIGLDLQ
                     NTTTANSVFVAMVSRADASSAVINLQGMITAQAATADGGDIILSGSGGIVGKAIGPSL
                     GGTNTDIYLHLASASRDIQL"
BASE COUNT          306 a          700 c          605 g          302 t
ORIGIN      
        1 cctctcagcg gcctatggcg aaagccggcc cggcgacacg ctcaagcctc tgaacctcaa
       61 gagcacctct gtggtggccg aagccgaggc cggctatccg ctgatccggc gccggcggct
      121 gaacctcaac gtggccggcg gcttcgactt catcaatcag gagaccgacg ccgggggggc
      181 caccggcccg ctgacccagg accggctgcg cgtcgcctat ctgcggaccg acggcgacct
      241 tcgtaccttc gccttcgacc ggacgttcct gatcagcggg gggctcaccc tgcgaaaggg
      301 gctctccggc ctcggcgcca gcgacgccgg gtccagcctg ctcacccgca gcctggccac
      361 acccgacgcc tggctggttc gcggcaacgg ttcggtcgac gcgcgggtcg ctggcccggt
      421 cagcgccagc ctgcggatgc aggcgcagta cgcctccaag ccgctgatgc cctatgagca
      481 gatttcgctg ggcgaccttt cgaccggccg cggctacgat ccggccgccg tgctcggcga
      541 cagcggcctg agcgcctcct tcgacctgcg ctacagcgcc atccagctca atccgaaggt
      601 gttggctgcg ccctacgtct tcttcgatgt cgggtccgta cataacaaca acgccgcgca
      661 gtccggcctt acacccaatc gcaccttgcg gtccttcggc gcaggggtcc ttctgcgtct
      721 ggccaaccgc gcaaatctgg agatcaccta cgcgaggcct atcgacagtg tgacggccgg
      781 gggggagcgc ccggcgccgc gtttgcttat caacctgacg gccagcttcc tgtgacgtgc
      841 gagtggaaac catgacccgt tctgggacac cttcgaccgt tcgagaccgc gccggggcgc
      901 gccggctcag ccgcgatctg tggaaccgca ccgcgctttg cggcgccctg gtcggcgtcg
      961 tctccagctt caccacgccc gcgatggccc tgccggtcct agccaacatg cagtcgcagg
     1021 tcagtgtcag cggcgaaggg ccctccagcg tcggcaggcc gggcggtgtc gagctcgaca
     1081 taacgctgca cgccccgcgc acggtgatcg actggtcgag ctacgacgtc gccgccggcg
     1141 aaaaggtcag ctacgccttc aacgcccgca actggatcgt gctcaaccgc atcaacgagg
     1201 cgaccccgcc gacgatcaac ggcatcgtcg aaggccgcgt caacggcgcc tacggcggca
     1261 atatctggtt cgcctccagg aacgggatga tcttcggccc gggcgctcgg gtcgacgccg
     1321 gcggcatcct ggtcaccacc gcctcgccgg gtccggacga tgtgcagagg ttcctcgacc
     1381 ccaacaacct gacctttaat ttctccggcg aagacgttgc cgacggtgcg atgatcgcta
     1441 tgcaggcggg ctcgtcgatc aacgggcatg gcggcctcgt ggccctcatc gcccccacca
     1501 tcgtcaccga ggccgggagc tcggtcaccg gcctgaacgg ctccgacgtg ctctatggcg
     1561 tcaccaccgg ctatcagctg cggctggcgc agggcgcgcc gggcgacttt gacctggtcg
     1621 acttcctgat cccgagcacc gaggcgggca gcggctcgac gatcgggttg gacctgcaga
     1681 acaccaccac cgccaactcc gtcttcgtgg ccatggtcag ccgggccgac gcctccagcg
     1741 cggtgatcaa cctccaaggc atgatcacgg cccaggcggc gacggccgac ggcggcgaca
     1801 tcatcctatc cggcagcggc ggcatcgtcg gcaaggccat cggcccgagc ctgggcggca
     1861 cgaacactga catctacctc cacctggcgt cggcgtcgcg cgacatccag ctg
//
LOCUS       DATAJL010000679         2679 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_50853,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000679 DATAJL010000000
VERSION     DATAJL010000679.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50853"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..463)
                     /locus_tag="VHN39_12945"
     CDS             complement(<1..463)
                     /locus_tag="VHN39_12945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEX2817297.1"
                     /translation="MSRLVMKFGGTSVADLERIRRVARLVNAEVAAGHRVAVVVSAMA
                     GKTNELVAWTDGSGAAAQGLALSDDEYDVVVASGEQVTAGLLAMALRNIGVPARSWMG
                     WQIPIIADDAHGRARIDDVEPDKLIAAMDSGEVAVIAGFQGVTRDGRIATLG"
     gene            603..1394
                     /gene="ubiG"
                     /locus_tag="VHN39_12950"
     CDS             603..1394
                     /gene="ubiG"
                     /locus_tag="VHN39_12950"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008689 - 3-demethylubiquinone-9
                     3-O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0006744 - ubiquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HEX2817298.1"
                     /translation="MASQAHVHSSIDPAEVERFSKIAAEWWDPKGKFAPLHKFNPTRL
                     SFIRDQALHRFGRDPKARRPFEGLRLLDIGCGGGLLSEPMSRLGFAVVGVDASERNIG
                     TASAHAAETGVAVDYRCSTAEALLAGGETFDVILNMEVIEHVADPGQFLRDCAAMLKP
                     PSSSKPGGLMIVATLNRTLKAFALAKVGAEYVLRWLPAGTHDWSKFLKPEELRGFLAD
                     QAVAVDGPYGVVFDPLSGRWSQSHDVDVNYMMTVARALPTHDGSS"
     gene            1601..2317
                     /locus_tag="VHN39_12955"
     CDS             1601..2317
                     /locus_tag="VHN39_12955"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEX2817299.1"
                     /translation="MADLLSGAPVCLHVGASDGRHSYVMTQVAPKATIYAIEPQAFSY
                     AVLKTTVAWHGIGDRVTPVYAAVGDKAGEMLLVTPRKITGRMGRAYAFLSEAPPQGKL
                     RPDLEDTGSEVQPTPVMTLDAFCAERGIGQVDFIRMDIEGAELMALHGASGILDRDRP
                     HVLVEIHPAMLEGRFGGTAEAVVELFTRRGYRMFALNGDRLEERFEVVADKPWKDYFF
                     IHPTRAARLPDGVFKARMAA"
BASE COUNT          412 a          894 c          933 g          440 t
ORIGIN      
        1 ggccaagggt ggcgatgcgg ccgtcgcggg tgacgccctg gaagcccgcg atcactgcga
       61 cctcgccgct atccatcgcc gcgatgagct tgtcgggctc gacgtcgtcg atgcgggcgc
      121 ggccgtgggc gtcgtcggcg atgatcggga tctgccagcc catccaggac ctggctggca
      181 cgccgatatt gcggagcgcc atggccagta ggccggccgt cacctgctcg ccggatgcca
      241 ccaccacgtc atattcgtcg tcggaaaggg cgaggccctg cgccgccgcg cccgagccgt
      301 cggtccaggc caccagttcg ttggtcttgc cggccatggc ggaaaccacc acggccacgc
      361 ggtgcccggc cgcgacctcg gcgttcacca gccgggccac ccggcggatg cgctccaggt
      421 cggccacgga cgtgccgccg aatttcatca cgaggcgtga catgggtctg acgcgtaagg
      481 cctaattgct gcgcttgcga ggggggcctt ctagcgatgg cgccgccgcc cggcaacgcc
      541 ccaacgtctt taaaggtctt ggggcatctt cgcttcgccg cggaagggcg ctaaggggag
      601 gcatggcttc gcaagcgcac gtgcattcga gcatcgatcc tgccgaggtc gagcggtttt
      661 cgaagatcgc cgccgagtgg tgggacccga agggcaagtt cgcgccgctg cacaaattca
      721 atccgacccg gctcagcttc atccgcgacc aggccctgca tcggttcggg cgagatccga
      781 aggcgcggcg gcccttcgaa ggcctgcggc tgctggatat cggctgcggc gggggcctgc
      841 tgtcggagcc catgtcgcgg ctggggttcg ccgtggtcgg cgtcgacgcc tcggagcgca
      901 acatcggcac ggcgtcggcc cacgcggcgg agacgggcgt cgccgtcgac taccgctgct
      961 ccaccgccga ggcgctgctg gcgggcggcg agaccttcga tgtgatcctc aacatggagg
     1021 tgatcgagca cgtggccgat ccgggccagt tcctgcgcga ctgcgcggcc atgctgaagc
     1081 ccccttcttc tagcaaaccg ggcggcctga tgatcgtcgc cacgctgaac cgcacgctga
     1141 aggccttcgc tctggccaag gtgggggcgg aatatgtgct gcgctggctg ccggccggca
     1201 cccacgactg gtcgaaattc ctgaagccgg aggagctgcg cggctttttg gcggatcagg
     1261 ccgtggcggt tgacggaccc tatggcgtgg tgttcgaccc gctcagcggc cgctggagcc
     1321 aaagccacga cgttgacgtc aactacatga tgacggtcgc gcgagccctt cccactcacg
     1381 atggatcatc gtgagtggga agggctccca gcaaaaagcg acgaccctgt tcatcccgat
     1441 caagtcgatc gggacagggt ctagcgacgc ggcctaagat tgcaatctcc gggggcggag
     1501 aagaggacca ttgatgcctt cgctacgcgt gctgagccac gcctttaggg cctggcggcg
     1561 caacttgcgg tggcgcaagc atgagccgga gacgccatac ttggcagact tgctgtccgg
     1621 cgcgccggtc tgcctgcatg tgggcgccag cgacgggcgc cattcctatg tcatgaccca
     1681 ggtggcgccg aaggccacga tctacgccat cgagccgcag gccttttcct atgcggtgct
     1741 gaagaccacc gtcgcctggc acgggatcgg cgaccgggtg acgccggtct acgccgcggt
     1801 cggcgacaag gccggcgaga tgctgctggt gacgccgcgc aagatcaccg gccgcatggg
     1861 ccgggcctac gccttcctgt cggaggcccc gccgcagggc aagctccggc ccgacctgga
     1921 ggacaccgga tccgaggtgc agccgacgcc ggtgatgacg ttggacgcct tctgcgccga
     1981 gcgtggcatc ggccaggtcg acttcatccg catggatatc gagggcgccg agctcatggc
     2041 cttgcacggc gccagcggca tcctcgaccg cgaccggccg cacgtgctgg tggagatcca
     2101 tccggccatg ttggagggcc gcttcggggg caccgccgag gccgtggtcg agctcttcac
     2161 ccgccgcggc taccgcatgt tcgcgctcaa cggcgaccgg cttgaggagc gcttcgaggt
     2221 ggtcgccgac aagccctgga aggactactt cttcatccat cccacccgcg ccgcgcgcct
     2281 gcccgacggg gtgttcaagg cgcggatggc ggcgtaggcc gcgaagccga accctgctct
     2341 cccccgcgaa gcggcgggtg gtggaggggg caagccccat ccgcggcttc ccggcggatc
     2401 ctcggccgga cgatcggacc cgagcgctac ggctacgctg acggttaaga cttctcggct
     2461 agcgtggagg tgtctggagc gggtttcggc gcatggctat ctggagaaac ctcggtttcg
     2521 gcctcctcgg tgcgatttcg atcgcgctgg cggacgcgcg cgccgcgtca gcggccatga
     2581 gcccttccgc cttcgcaact gcggtcgaaa agcgggctca gggcgtcacc tttgatcaac
     2641 tgcggcggtt cggcgacgcc gccacgcacg gtggtgacc
//
LOCUS       DATAJL010000680        13507 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38132,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000680 DATAJL010000000
VERSION     DATAJL010000680.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 13507)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13507)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13507
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38132"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            163..1197
                     /gene="trpS"
                     /locus_tag="VHN39_12960"
     CDS             163..1197
                     /gene="trpS"
                     /locus_tag="VHN39_12960"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEX2817300.1"
                     /translation="MTDQAPAPFTGKSRVLSGVQPSGDLHLGNYLGALVKFARLQHEI
                     ETFIFVADLHAITAWQDPAKLKDQVREIAAAYLATGLDPKVATIFAQSAVPAHAELAW
                     VFNCVARVGWLDRMTQFKDKAGKHKERESVGLYTYPVLQAADILIYKATHVPVGEDQR
                     QHLELTRDIAAKFNNDFGQPGFFPLPEALTQGPGARIMSLRDGAVKMSKSDPSDNSRI
                     NLTDDADTISQKIRKARTDADVLPEKLDDLAGRAEAQNLIGVYAALSGCTPQDVLTEF
                     AGQGFGAFKPKLADLAVSVMGPIGGDMRRLLADPAEIDKILGAGAERARDEAAPTLAE
                     VKRIVGYWAG"
     gene            1254..1727
                     /locus_tag="VHN39_12965"
     CDS             1254..1727
                     /locus_tag="VHN39_12965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX2817301.1"
                     /translation="MSQRKFLVVADDTPEFQAALRFACRRARSTGGHVALLRVIEPEY
                     FEHWSGVREEIDRQAREEAEAILQKSAELVLAETGLPPEFLIKHADNVRTALREVIGS
                     DPDIKILVLAAAVGGRGPGPLVASLAKEGVTWGARKVPVTLVPGDLTDDEVADLA"
     gene            1765..2337
                     /locus_tag="VHN39_12970"
     CDS             1765..2337
                     /locus_tag="VHN39_12970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEX2817302.1"
                     /translation="MFIQTEATPNPEVLKFLPGRDVMGEGTRDFRDGEAAVASTLAVE
                     LFSIEGVDRVFFGPDFLTVGKTADHDWSHLKAPILAAIMDHFTSGQPLFAGADDAAGG
                     HDEGVYEGETAQIVAEIKDLLDTRIRPAVAQDGGDILFSRFDEATGVVYLNMRGACSG
                     CPSSSATLKAGVENMLKHYVPEVTGVEQTL"
     gene            2352..2990
                     /gene="tsaB"
                     /locus_tag="VHN39_12975"
     CDS             2352..2990
                     /gene="tsaB"
                     /locus_tag="VHN39_12975"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003725 - double-stranded RNA binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEX2817303.1"
                     /translation="MVLGLDTCLSSCSVAVLDGERVLGRAREVMARGHQERLAPMARQ
                     MMAEAGLAFDKLDRIAVTVGPGSFTGLRVGIAFAKGLALALDLPAVGIGTLEALAADA
                     AQESGGLVIPAIDARRGQLYLQAFEDGRALMAPDALTVEVAAARLAELSQGRPFTLVG
                     SGAALLADFAPNAEVIPAEGADARVVARLAAAREPAPLKPLYLRAPDAKLPA"
     gene            2987..3445
                     /locus_tag="VHN39_12980"
     CDS             2987..3445
                     /locus_tag="VHN39_12980"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007663145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817304.1"
                     /translation="MKLVRATAAECEAMAAAHAQAFEAKAWREDEFEDLLEGEGIYGF
                     LADDDAPLGLILCRIAADEVEILTVGVMLAARRRGVALALMLAALDIAREAGVAGAFL
                     EVAVDNDAAINLYELMGFERTGLRKSYYDRGPEGFTDALVMRLDLNAAAA"
     gene            3524..3898
                     /locus_tag="VHN39_12985"
     CDS             3524..3898
                     /locus_tag="VHN39_12985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HEX2817305.1"
                     /translation="MRMTEQRRVIARVLSDAHDHPDVEELHRRAHAVDPHISIATVYR
                     TVRLFDEAGIITRHDFRDGRSRYEEHPDQHHDHLIDMKTGQVVEFVDAEIEALQEAIA
                     RKLGYRLVDHRLELYGMPIEDK"
     gene            3950..5320
                     /gene="miaB"
                     /locus_tag="VHN39_12990"
     CDS             3950..5320
                     /gene="miaB"
                     /locus_tag="VHN39_12990"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007663149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEX2817306.1"
                     /translation="MSDPAPAKRLFIKTYGCQMNVYDSERMADVLAPLGYAMTDSAEG
                     ADLVVLNTCHIREKATEKVYSELGKLKEMRDERVAEGGSRMTIAVAGCVAQAEGEEIM
                     RRQPAVDLVVGPQAYHQLPELIARTHRARGERLSADFEPQDKFDALEPVGRTANGVTA
                     FLTVQEGCDKFCTFCVVPYTRGGEWSRSPETIEAEARDLAAQGVREVTLLGQNVNAYA
                     GEGGLAALVRRLAMVEGLDRIRYTTSHPRDMDDALIAAHAEVDALMPYLHLPVQSGCD
                     RILKAMNRAHTAESYARLIEKIRAARPDIAISGDFIVGFPGERESDFEATLNLVREVG
                     YATAFSFKYSRRPGTPASAMPGQVDEAVKDERLARLNALLDEQARAFNASQVGKVLPV
                     LFERAGRHPGQLIGRSPYLQAVHATAPDRLIGQIVPVRIESAARMSLGGALVTEELEP
                     AKEMAS"
     gene            5317..6282
                     /locus_tag="VHN39_12995"
     CDS             5317..6282
                     /locus_tag="VHN39_12995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEX2817307.1"
                     /translation="MSRAPEFINLSDAASRAVAGANSRHAALIEDAFDVLVETPGGGV
                     SLTGDSKGRAQAKQAVQAIAERADQGLEIAESDVRVAIGNARTGGAGPGALPVGRRGQ
                     VAPKTKMQAEYLQALAKNELVFGLGPAGTGKTFLAVAHGAGLLLRGEVDRLIVSRPAV
                     EAGERLGFLPGDLTEKVDPYMAPVWEALTDILGAEQLRRRREKGEIEVAPIAFLRGRT
                     LAHAFVIVDEAQNATRLQMKMVLTRLGEGARMVVTGDPTQIDLVNIRDSGLAHAVGLL
                     EGVKGIGVTRFTAEDVVRHPLVERIVRAYDAEAAKAAKSQAGQAI"
     gene            6321..6761
                     /gene="ybeY"
                     /locus_tag="VHN39_13000"
     CDS             6321..6761
                     /gene="ybeY"
                     /locus_tag="VHN39_13000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEX2817308.1"
                     /translation="MANAEALVLEAADATLASEGAVGEGVTLLLTDDETIRDLNRRFR
                     QQDRPTNVLSFPAPQNPERFLGDIALAYGVCAREAREQGKPLTHHLQHLVAHGVLHLL
                     GYDHVSDAQAEEMEGLERAVLAELGIPDPYEAGEGDHDRPRPSA"
     gene            6736..7647
                     /locus_tag="VHN39_13005"
     CDS             6736..7647
                     /locus_tag="VHN39_13005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HEX2817309.1"
                     /translation="MTDPDPAPEPAPSSGEPHQRNRGVLSLFDRFRGRPSQADTEPPE
                     PPTAATGELVSQARAFQDLRVDDVMKPRADIVAIDRSCSFAELTARFVEAEHSRMPVY
                     RETLDDPVGVVHVKDVFKLLARKTRKPRPGDHVLSGRHNLVRQVLYVPASMRASELLG
                     QMRAEQTHMALVIDEFGGTDGLVTLEDLLETLVGEISDEHDDAAEDGPPPIVRDGETW
                     VADGRTPLEDLEAAIGNGVDLAPPDLDEEIDTVAGLVNALAGRVPQRREVVDHPGGFT
                     IEVLSADPRRVKRVRVHRTSPPAQTQV"
     gene            7656..9224
                     /gene="lnt"
                     /locus_tag="VHN39_13010"
     CDS             7656..9224
                     /gene="lnt"
                     /locus_tag="VHN39_13010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006497 - protein lipidation [Evidence
                     IEA];
                     GO_process: GO:0042158 - lipoprotein biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEX2817310.1"
                     /translation="MGWARGWSGRGLALLAGAAAGLAHPPFGFLPGLLGYALLLALID
                     VDSPTPLRSALFRGWLAGVGYFSVGMWWITEPFMVDAREQGWMAPFALILMAGGLALF
                     WAAAAWLYRALKPRGIGRILVFAGSLAGFEWLRGHVLTGLPWDLPGEAWAAGSAPSQM
                     AAIVGAYGLTWITLAIAAAPAALAQASGWRPKALALGLAGLAMAGLYGSGAWRLDHAA
                     LARPGAPMIRVVQANIDQKNKWKPENLGMVFDTYVGLTTRKAAVQPAIVIWPEGALPA
                     VIDELIAPGSPYAAKLRDAVAPGQTLLMGANRAEVGPTGVARYFNSLVAFRREGQGLR
                     VTGVYDKHHLVPFGEYMPAADFATKVGFRSLVHMPDDFSAGPRSQPIAPWGIPAVQVL
                     ICYEALFPGVTRAGAAQSGLRPAWILNISNDSWFGEGSGPLQHLNIASYRAIEEGLPM
                     VRATPTGVSAVIDAYGRVSPGARLGLGGLGVIDAPLPSALEMTPFSQSGDLWFGAMVL
                     LSGLVAVAYRVRRP"
     gene            9297..9719
                     /locus_tag="VHN39_13015"
     CDS             9297..9719
                     /locus_tag="VHN39_13015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2817311.1"
                     /translation="MDKPEEPAQGPNPVDRHVGLRIRMRRKELGISQERLAESIGLTF
                     QQVQKYERAANRVSASKLWEMSRALSTNISYFYEGLGDTIEAPGSNLPRESMQDFLLT
                     PEGIELAAIFPKIAKGRVRRKILDLVRAMAGEPDAVES"
     gene            9864..11084
                     /gene="metK"
                     /locus_tag="VHN39_13020"
     CDS             9864..11084
                     /gene="metK"
                     /locus_tag="VHN39_13020"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEX2817312.1"
                     /translation="MSRSNYIFTSESVSEGHPDKVADRISDTVVDAFLAAEPEARVAC
                     ETLVTTNRIVLAGEVRAGRPGGSKAESKQLTKDIVRGLESKVRQAIKDIGYEQKGFHW
                     ARAKYACYLHPQSAHIAQGVDAKDNKDEGAGDQGIMFGYAVDETPSLMPATLQYSHDI
                     LKRLAEVRHSGECSVLEPDAKSQVTLRYEDGRPVEVLQIVVSTQHKRRIGLHMATPKR
                     IEGVIRPYVEAVFPAGLITKKTKWHVNPTGRFEIGGPDGDAGLTGRKIIVDTYGGAAP
                     HGGGAFSGKDPTKVDRSAAYLCRYLAKNVVASGLAKKCTIQISYAIGVAQPLSFYVDL
                     HDTGEIDPAKLELVLPEMVGGATPRAIREHLQLNRPIYARTAAYGHFGRQPDNEGGFS
                     WERPDLADELKKLA"
     gene            11119..11793
                     /gene="trmB"
                     /locus_tag="VHN39_13025"
     CDS             11119..11793
                     /gene="trmB"
                     /locus_tag="VHN39_13025"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEX2817313.1"
                     /translation="MSDAYPPLRSYGRLKTRTIKPRQAALMESLLPGLRPPAGPFDPR
                     ALMPDASEVWLEIGFGGGEHMAAQAGLHPDTLIIGAEPFQNGVASALRHIDEAHLTNV
                     RVLDGDARELMANLPDACLDRAFVLFPDPWPKTRHHKRRVIQAETVAELARLLKPGGR
                     LRFASDVAHYVDWALALFVRNPVFRWSADQASDWRDPPADHITTRYEEKRLGDCAPVF
                     LDFVRR"
     gene            complement(11783..12121)
                     /locus_tag="VHN39_13030"
     CDS             complement(11783..12121)
                     /locus_tag="VHN39_13030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817314.1"
                     /translation="MSDFKVALAPGQLTQTINPWSWTMGDFSFFTVNLGQSGDPGLEA
                     QVLGKVGSYGRQLGRLGEAMTVLLDHLELKDLKPHEKAAIRALKRQLEEIADLRTERR
                     SGQQAASLSA"
     gene            complement(12225..12755)
                     /gene="ppa"
                     /locus_tag="VHN39_13035"
     CDS             complement(12225..12755)
                     /gene="ppa"
                     /locus_tag="VHN39_13035"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEX2817315.1"
                     /translation="MDLSKIPVGVNPPYDVNAIIEIPQGGEPVKYEIDKESGALFVDR
                     FLHTAMFYPGNYGFIPHTLADDGDPMDIIVVGQTPVVPGAIIRARPIGCLMMTDEAGG
                     DEKVLAVPVDALHPFYTGVDSWRSLPGILTEQIAHFFQHYKDLEKGKSVKITGWAEPE
                     QTADLIRAAIQRYKDA"
     gene            12987..>13507
                     /gene="rimP"
                     /locus_tag="VHN39_13040"
     CDS             12987..>13507
                     /gene="rimP"
                     /locus_tag="VHN39_13040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEX2817316.1"
                     /translation="MRGKTAEDQNLLELLDPVAEAAGYAIVRLRLMGGEHARRLQIMA
                     ERPSDGDMNVEDCARLSRAISEIMDAADPIAGEYTLEVSSPGVDRPLTRLADFAAYQG
                     YEARIELDRLAEGRKRFKGLLVGVDDGQVAVDLEGEEETAMIPFAWIVEAKLVLTDQL
                     MKRGADVRAARLQS"
BASE COUNT         2117 a         4869 c         4484 g         2037 t
ORIGIN      
        1 gggcgatccg cccgaggggc cggcggactt gccctgaccg cccctgacgc ggtatttcgc
       61 ggccatggct tgcggcttcc caacctggcg atggcgttga tcggctgacc cgacctcatc
      121 ggggccttgc gcccgcacgc caaattcctg agaagccatc ccatgaccga ccaagctccc
      181 gcgcccttca cgggcaagtc ccgcgttctg tccggcgtgc agccgtccgg cgacctgcac
      241 ctgggcaact atctcggcgc cctggtgaaa ttcgcgcgcc tgcagcacga gattgagacc
      301 ttcatcttcg tggccgacct gcatgcgatc accgcctggc aggatccggc caagctgaag
      361 gatcaggtcc gcgagatcgc cgcggcctat ctggccaccg gcctcgaccc caaggtcgcc
      421 accattttcg cccaatccgc cgtgccggcg cacgctgagc tcgcctgggt gttcaactgc
      481 gtggcccgcg tcggctggct cgaccggatg acccaattca aggacaaggc cggcaagcac
      541 aaggaacgcg agagcgtggg cctctacacc tacccggtgc tccaggccgc cgacatcctg
      601 atctacaagg ccacccacgt gcccgtgggc gaggaccagc ggcagcatct ggaactgacc
      661 cgcgacattg cggcgaagtt caacaacgat ttcggccagc cgggcttctt ccccctgccc
      721 gaggccctga ctcaggggcc gggcgcgcgg atcatgagtt tgcgcgatgg cgcggtgaaa
      781 atgtccaagt ccgatccttc ggacaattcg cggatcaacc tcaccgacga cgccgacacc
      841 atcagccaga agatccgcaa ggcgcgcacc gacgccgacg tcctgccgga aaagctggat
      901 gacctggccg gccgcgccga ggcgcagaac ctgatcggcg tctatgcggc gctctcgggc
      961 tgtacgccgc aggacgtcct gaccgagttc gccggccagg gcttcggcgc cttcaagccg
     1021 aagctcgcgg acctcgccgt ttccgtcatg ggtccgatcg gcggcgacat gcgacgcctg
     1081 ctggccgacc ccgctgagat cgacaagatc ctgggcgccg gcgccgagcg cgcgcgtgac
     1141 gaggccgccc cgaccctggc cgaggtcaag cgcatcgtcg gctactgggc gggctgagcc
     1201 ttgcgcggcg gcccgctctt gccttgtagg gtgggccgcg tcaccgtcgc cgcatgagcc
     1261 agcgcaagtt cctggtcgtc gccgacgaca cgccggagtt ccaggcggcc ctgcgcttcg
     1321 cctgccgccg cgcgcgctcc accggcggcc atgtggccct gctcagggtc atcgagcccg
     1381 agtacttcga gcactggtcg ggcgtgcgcg aggagattga ccgccaggcg cgcgaggagg
     1441 ccgaggccat cctgcagaag tccgccgagc tggtgctggc cgagaccggc ctgccgcccg
     1501 agttcctgat caagcacgcc gataatgtcc gcacggcgct gcgcgaggtg atcggctccg
     1561 atcccgacat caagatcctg gtgctcgccg ccgcggtcgg cgggcgcggg cccggccccc
     1621 tcgtcgcgtc cctcgccaag gagggcgtca cctggggcgc gcgcaaggtg ccggtgaccc
     1681 tggtgcccgg cgacctcacc gacgatgagg tcgccgatct ggcgtgaact tgcgctccgg
     1741 ccccgcacgc gccacatctg gaccatgttc atccagaccg aagccacccc gaaccccgag
     1801 gtcctgaagt tcctgcccgg ccgcgacgtc atgggcgagg gcacgcgcga cttccgtgat
     1861 ggcgaggcgg ctgtcgcctc gacgctggcc gtcgagctct tttccatcga gggcgtcgac
     1921 cgggtgttct tcggccccga cttcctgacg gtgggcaaga ccgccgatca cgactggagc
     1981 catctgaagg cgccgatcct ggcggcgatc atggaccact tcacctccgg ccagccgctg
     2041 ttcgccggcg ccgatgatgc cgcgggcggt catgacgagg gcgtctacga gggcgaaacc
     2101 gcccagatcg tcgccgagat caaggacctg ctcgacaccc gcatccgccc ggccgtggcc
     2161 caggacggcg gcgacatcct gttctcgcgc ttcgatgagg ccaccggcgt cgtctatctg
     2221 aacatgcgcg gcgcctgttc cggctgcccc tcctcctcgg cgacgctgaa ggccggggtc
     2281 gagaacatgc tcaagcacta cgtcccggaa gtgacgggcg tcgaacaaac cctctaagac
     2341 gggggcgaat gatcgtcctc ggcctggata cctgcctctc aagctgctcg gtcgcggtgc
     2401 tcgacggtga gcgcgtgctt ggtcgtgcgc gcgaggtcat ggcgcgcggg catcaggagc
     2461 ggcttgcgcc catggcccgg cagatgatgg ctgaggccgg cctggccttc gacaagctcg
     2521 accgcatcgc ggtgaccgtc gggccgggct ccttcacggg ccttcgggtc ggcatcgcct
     2581 tcgccaaggg cctggcgctg gccctcgatc tgccggccgt cgggatcggc acgctcgagg
     2641 ccctggccgc agacgctgcc caagagtccg ggggcctggt catccccgcc atcgacgccc
     2701 gccgcggcca gctctacctg caggccttcg aggacggccg cgcgctcatg gcccccgatg
     2761 ccctgaccgt cgaggtcgcc gccgcgcgcc tcgctgagct gtcgcagggc cggcccttca
     2821 ccctggtcgg ctccggcgcg gccctgcttg ccgacttcgc gcccaacgcc gaggtcatcc
     2881 ccgccgaggg cgcggacgca cgagttgtgg cgcgcctggc cgccgcccgc gagcccgcgc
     2941 cgctgaaacc cctctacctg cgcgcgcccg acgccaagtt gccggcatga agctcgtccg
     3001 cgccaccgcg gcggaatgcg aggccatggc cgccgcccac gcccaggcct tcgaggccaa
     3061 ggcctggcgc gaggacgaat tcgaggacct gctggagggc gagggcatct acggcttcct
     3121 ggccgacgac gacgcgccgc tgggcctcat cctttgccgg atcgccgccg acgaggtgga
     3181 gatcctgacg gtgggcgtca tgctggccgc gcgccgccgg ggcgtggcgc tggctctgat
     3241 gctagccgcg ctggacatag cgcgcgaggc gggcgtggct ggagcgttcc tggaggtcgc
     3301 ggtggacaac gacgcggcca tcaacctcta cgagctgatg ggtttcgagc gcaccggcct
     3361 gcgcaagtcc tattacgacc gcggcccgga ggggttcacc gacgccctgg tgatgcgcct
     3421 cgaccttaac gccgccgccg cttagaccta ctccttggct tggaacagga gccgggagcc
     3481 cgccgtgtcc gatcgcatcg aaaagctgtg tatcgaaaag ggcatgcgca tgaccgagca
     3541 gcgccgggtg atcgcccgcg tgctctccga cgcccacgac caccccgacg tcgaggagtt
     3601 gcaccgccgc gcccacgcgg tcgatccgca catctccatc gccacggtct accggaccgt
     3661 gcgtctgttc gacgaggccg ggatcatcac ccgccacgac ttccgcgacg gccgctcccg
     3721 ctacgaggaa caccccgacc agcaccacga ccacctgatc gacatgaaga ccggccaggt
     3781 cgtggaattc gtcgacgccg agatcgaggc cctgcaggag gccatcgccc gcaagctcgg
     3841 ctacaggctg gtggatcacc ggctcgaact ctacggcatg ccgatcgagg acaagtagcg
     3901 ggctctcgca aacttgcgcc gctctcccgg caaccccata accccagcca tgtccgaccc
     3961 tgcgcccgca aagcgcctct tcatcaagac ctacggctgt cagatgaacg tctatgacag
     4021 cgagcggatg gccgatgtgc tggccccgct gggctacgcc atgaccgact cagccgaagg
     4081 ggcggacctc gtcgtgctca acacttgcca catccgcgag aaggccaccg agaaggtcta
     4141 ttccgagctg ggcaagctga aggagatgcg cgacgagcgg gtcgccgaag gcggttcgcg
     4201 gatgaccatc gccgtcgccg gctgcgtcgc ccaggccgag ggcgaggaga tcatgcgccg
     4261 ccagcccgcc gtggacctgg tcgtgggccc gcaggcctat caccagctgc ccgagctgat
     4321 cgcccgcacc caccgcgccc gcggcgagcg gctcagcgcc gatttcgagc cgcaggacaa
     4381 gttcgacgcc ctggagcccg tcggccgcac ggccaatggc gtcaccgcct tcctcaccgt
     4441 ccaggagggc tgcgacaagt tctgcacctt ctgcgtggtg ccctataccc gcggcggcga
     4501 gtggtcgcgc agcccggaga ccatcgaagc cgaggcccgc gacctggccg cccagggcgt
     4561 gcgcgaggtc accctgctgg gccagaacgt caacgcctat gcaggtgagg gcgggttggc
     4621 cgccttggtg cgacgcctcg cgatggtcga gggcctcgac cgcatccgct acacgacgag
     4681 ccacccgcgc gacatggacg acgccctgat cgccgcccac gccgaggtcg atgccctgat
     4741 gccctacctg cacctgccgg tgcagtccgg gtgcgaccgc atcctgaagg ccatgaaccg
     4801 ggcgcacacg gcggagagct acgcccgcct catcgagaag atccgcgccg cgcggccgga
     4861 catcgccatc tccggcgatt tcatcgtggg cttccccggt gagcgggaga gcgatttcga
     4921 agcgaccctg aacctggtcc gcgaggtcgg ctacgccacc gccttcagct tcaaatattc
     4981 gcgccgtccc ggcacgccgg cctcggccat gccgggccag gtggacgagg cggtgaagga
     5041 cgagcggctc gcccgcctca acgcgctcct ggacgaacag gcccgcgcct tcaacgccag
     5101 ccaggtgggc aaggtcctgc ccgtgctgtt cgaacgcgcc ggccgtcacc ccggccagct
     5161 gatcggccgc agcccctatc tgcaggcggt tcacgccacc gcgccggatc gtctgatcgg
     5221 ccaaatcgtt ccggttcgga tcgaaagcgc cgcgcggatg agcctcggcg gcgcgctggt
     5281 cacggaagag ctggagcccg ccaaagagat ggcaagttga gccgcgcgcc tgaattcatc
     5341 aacctctccg acgccgcctc ccgcgcggtg gccggcgcca actcgcgcca cgccgccctg
     5401 atcgaggacg ccttcgacgt gctggtggag accccgggtg gtggcgtctc gctcaccggc
     5461 gactcgaagg gccgcgccca ggccaagcaa gccgtgcaag cgatcgccga gcgcgccgac
     5521 caggggctgg agatcgccga gtccgacgtg cgcgtggcca tcggcaatgc gcggaccggc
     5581 ggcgccggcc ccggcgccct gccggtcggc cgccgcggtc aggtggcgcc caagaccaag
     5641 atgcaggcgg aatacctgca ggcgctggcg aagaacgagc tggtcttcgg gctgggcccc
     5701 gccggcaccg gcaagacctt cctggcggtg gcgcacggcg ctggcttgct gctgcgcggc
     5761 gaggtcgacc ggctgatcgt gtcgcgcccc gccgtcgagg ccggcgagcg cctgggtttc
     5821 ctgcccggcg acctgaccga aaaggtcgat ccctatatgg cgccggtctg ggaggcgctc
     5881 accgacatcc tgggcgccga gcagctgcgc cgccgtcgcg agaagggcga gatcgaggtc
     5941 gcccccatcg ccttcctgcg cggccggacg ctcgcccacg ccttcgtcat cgtcgacgag
     6001 gcccagaacg ccacgcgcct gcagatgaag atggtgctga cgcgcctcgg cgaaggcgcg
     6061 cgcatggtgg tcaccggcga cccgacccag atcgacctgg tcaatatccg cgacagcggc
     6121 ctcgcccacg ccgtcggcct gttggaaggc gtgaagggca tcggcgtcac ccgcttcacc
     6181 gccgaggacg tggtccgcca cccgctcgtc gagcgtatcg tgcgcgccta tgacgccgag
     6241 gcggccaagg cggccaaatc gcaagctgga caggccattt gaccgacgtc gaggtcgagg
     6301 acccggcctg gacggaggcc atggccaacg ccgaagccct ggtgctggag gccgccgacg
     6361 cgacgctcgc ttccgagggc gctgtgggcg agggcgtgac cctgctgctc accgacgacg
     6421 agaccatcag ggatctcaac cgccgcttca ggcagcagga ccgcccgacc aatgtgctgt
     6481 ccttccccgc gccgcaaaac cctgagcggt tcctgggcga catcgcgctg gcctacggcg
     6541 tttgcgcccg cgaagcccgc gaacagggca agccgctgac tcatcacctg cagcatctgg
     6601 tggcgcatgg ggttctgcac cttctaggat atgaccacgt gagtgacgcg caggccgaag
     6661 agatggaagg cctggaacgc gccgtgctgg ccgaactggg gattccggat ccctacgagg
     6721 ctggtgaggg agaccatgac cgaccccgac ccagcgcctg agccggcccc ttccagcggt
     6781 gagccccacc aaaggaaccg gggcgtgctg tccctgttcg accggttccg cgggcgtccc
     6841 tcccaggccg acaccgagcc gcccgagccg cccaccgcgg ccaccggcga gctggtcagt
     6901 caggcgcgcg ccttccagga cctgcgcgtc gacgacgtca tgaagccccg cgccgacatc
     6961 gtcgccatcg accgcagctg ctccttcgcc gagctcaccg cccgcttcgt cgaggccgag
     7021 cacagccgca tgccggtcta ccgcgagacc ctcgacgacc cggtgggcgt ggtccacgtc
     7081 aaggacgtct tcaagctgct cgcccgcaag acccgcaagc cccggcccgg cgaccatgtg
     7141 ctctccggcc gccacaacct ggtgcgccag gtgctctatg taccggcctc catgcgggcc
     7201 tcggagctgc tcggccagat gcgcgccgag cagacccaca tggcgctggt gatcgacgag
     7261 ttcggcggca ccgatggcct ggtcaccctg gaggatctgc tggagaccct ggtgggtgaa
     7321 atctccgacg agcacgacga cgcggccgag gacggcccgc cgcccatcgt gcgcgatggc
     7381 gagacctggg tggccgacgg ccgcacgccg ctggaggacc tggaggccgc gatcggcaac
     7441 ggcgtcgacc tcgccccgcc cgacctcgac gaggagatcg acaccgtggc cggcctggtc
     7501 aatgcgctcg ccggccgcgt gccgcagcgg cgcgaagtcg tcgaccatcc cggcggcttc
     7561 accatcgagg tgctgtccgc cgatcccagg cgcgtgaagc gcgtgcgcgt gcaccgcacc
     7621 tctccgcccg cccagaccca ggtctgagtc cgcgcatggg gtgggcgcgc ggatggtcgg
     7681 ggcgagggct ggcgctgttg gcgggcgccg ccgcgggcct ggcccatccg ccgttcggat
     7741 tccttcccgg cctgctcggc tacgcgctcc tgctggcgct catcgacgtc gatagtccga
     7801 cgcccctgcg ctcggccctg tttcggggat ggctggccgg cgtcggctat ttctcggtgg
     7861 gcatgtggtg gatcaccgag cccttcatgg tcgacgcccg ggagcagggc tggatggcgc
     7921 ccttcgccct gattctgatg gcgggcggcc tggcgctgtt ctgggcggcg gcggcttggc
     7981 tctaccgcgc gctgaagccg cgcggcatcg gccgcatcct ggtgttcgca ggcagcctcg
     8041 cgggctttga gtggctgcgc ggccacgtcc tgacaggcct gccgtgggac ctgcccggcg
     8101 aggcctgggc cgccggctcg gcgccttccc agatggcggc gatcgtcggc gcctacggtc
     8161 tgacctggat cacgctggct atcgccgcag ccccggcggc gctggcgcag gccagcggct
     8221 ggcggccaaa ggcgctggcg ctcggcctcg caggcctggc catggccggc ctctacggtt
     8281 ccggcgcctg gcggctggac cacgccgccc tcgcccggcc cggcgcgccg atgatccgcg
     8341 tggtgcaggc caacatcgac cagaagaaca agtggaagcc ggaaaacctc ggcatggtct
     8401 tcgacaccta cgtcggcctg accacccgca aggccgccgt gcagccggcc atcgtcatct
     8461 ggccggaggg cgcgctgccg gcggtgatcg acgagctgat cgcgccgggc tcgccctatg
     8521 cggcgaaact ccgcgacgcc gtggcgccag gtcagacgct gctgatgggc gccaaccgcg
     8581 ccgaggtcgg cccgacgggc gtcgcccgct acttcaacag cctggtggcc ttccgccgcg
     8641 agggccaggg gctgcgcgtc accggggtct acgacaagca ccatctggtg cccttcggcg
     8701 aatatatgcc ggccgcggac ttcgctacca aagtcggctt ccgcagcctg gtccacatgc
     8761 ccgacgactt cagcgcgggg ccccggtccc agcccatcgc gccctggggc ataccggctg
     8821 tgcaggtgct gatctgttac gaggccctgt tccccggcgt gacgcgggcc ggcgcggccc
     8881 agagcggcct caggcccgcc tggatcctca acatctccaa cgattcctgg ttcggagagg
     8941 ggtcaggccc actccagcac ctgaacatcg ccagctaccg cgccatcgag gaaggcctgc
     9001 ccatggtgcg ggccacgccc accggagtct ccgccgtgat cgacgcctac ggacgggtct
     9061 cgcccggcgc ccggctgggc ctcggcggcc tgggggttat tgacgcaccg ctgccatcgg
     9121 cgcttgaaat gacgccgttt tcccaatcag gtgacctctg gttcggcgcc atggtcctgt
     9181 tgtccggtct ggtggcggtt gcatatcgcg ttcgacgacc gtaattcggc gatgtggcct
     9241 aaattccgac agcgtctggc gattcgcttg tccgacgacg tttcaatggg agctacatgg
     9301 acaagccgga agagcccgcg cagggcccga accccgtcga ccgccacgtc ggcctgcgca
     9361 taagaatgcg ccgcaaggaa ctggggatca gccaggagcg cctggccgag tccatcggcc
     9421 tgacctttca gcaggtgcag aagtacgagc gcgccgccaa ccgggtgagc gcctcgaagc
     9481 tgtgggagat gtcccgggcg ctctccacca atatcagcta tttctacgag ggcctcggcg
     9541 acaccatcga ggcgcccggg tccaacctgc cgcgcgaaag catgcaggat ttcctgctga
     9601 cgcctgaggg catcgaactg gccgccatct ttccgaagat cgccaagggc cgggtccggc
     9661 gcaagattct cgacctggtc cgcgccatgg ccggcgagcc ggatgcggtg gaatcttaag
     9721 ggtcggcgct taaggaacgg tcgagccact gcttaaccac gcgcctcaaa cgcgggcttg
     9781 gcgggacata aagatatctt tataggcttg ccgaccttat tggccgccgc ctcgtcaagg
     9841 cggcccttcc cggagccagc gccttgagcc gttccaacta catcttcacg tccgaaagcg
     9901 tttccgaggg tcacccggac aaggtcgccg accgcatctc cgacaccgtg gtcgacgcct
     9961 tcctggccgc cgagcccgag gcccgggtgg cctgcgagac cctggtgacc accaaccgca
    10021 tcgtgctggc cggcgaagtc cgcgccgggc gcccgggcgg ctccaaggcc gagagcaagc
    10081 agctcaccaa ggacatcgtc cgcggccttg agtccaaggt ccgccaggcg atcaaggaca
    10141 tcggctacga gcagaagggc ttccactggg ccagggccaa gtacgcctgc tacctgcacc
    10201 cgcagtcggc tcacatcgcc cagggcgtcg acgccaagga caacaaggac gagggcgcgg
    10261 gcgaccaggg catcatgttc ggctacgccg tcgacgagac gccctcgctg atgccggcca
    10321 ccctgcagta cagccacgac atcctgaagc gcctggccga ggtccgccac tcgggcgagt
    10381 gctcggtgct ggagcccgac gccaagagcc aggtcaccct gcgctatgag gacggacggc
    10441 ccgtcgaggt gctgcagatc gtcgtctcga cccaacacaa gaggcgcatc ggcctgcaca
    10501 tggccacgcc caagcgcatc gaaggggtga tccgtcccta cgtggaagcc gtcttcccgg
    10561 ccggcctgat caccaagaag accaagtggc acgtcaatcc caccggccgc ttcgagatcg
    10621 gcgggccgga cggcgacgcg ggcctcactg gccgcaagat catcgtcgac acctatggcg
    10681 gggcggcccc gcacggcggc ggcgccttct ccggcaagga cccgaccaag gtcgaccgat
    10741 cggcggccta cctctgccgc tacctggcca agaacgtcgt ggcttcgggc ctggccaaga
    10801 agtgcaccat ccagatcagc tatgcgatcg gcgtcgccca gccgctttcc ttctacgtcg
    10861 acctgcacga caccggcgag atcgatcccg ccaagctgga actggtcctg cccgagatgg
    10921 tcggcggcgc gaccccccgg gccatccgcg agcacctgca gctcaaccgg ccaatctatg
    10981 cccgcaccgc cgcctacggc cacttcggcc gccagcccga caacgaaggc ggcttctcct
    11041 gggaacgccc ggacctggcg gacgagctga agaagctggc ctgatcccat gcgcgcgcgg
    11101 gtgcgctaga agcggccgat gtccgacgct tacccgccgc tccgctccta cggccgcctg
    11161 aaaacccgca ccatcaagcc gcggcaggcc gcgctgatgg agagcctgct gccgggcctg
    11221 cgcccgccgg ccgggccctt cgatccgcgc gcgctcatgc cagacgccag cgaggtctgg
    11281 ctggagatcg gctttggcgg cggcgagcac atggccgccc aggcgggcct tcaccccgac
    11341 accctgatca tcggcgccga gcccttccag aacggcgtgg cgagcgcgct gcgccacatc
    11401 gacgaggcgc atctgaccaa tgtccgcgtc ctcgacggcg acgcccgcga gctgatggcg
    11461 aacctgccgg acgcctgcct cgaccgcgcc ttcgtgctct tccccgaccc ctggcccaag
    11521 acccgccacc acaagcgtcg ggtcatccag gctgagacgg tggccgagct ggcccgcctg
    11581 ctgaaacccg gcggacgcct gcgcttcgcc agcgacgtgg cgcactatgt ggactgggcg
    11641 ctggcgctgt tcgtgaggaa ccccgtcttc cgctggagcg ccgaccaggc ctcggactgg
    11701 cgcgacccgc ccgccgacca catcaccacc cgctacgagg aaaagcgcct cggcgactgc
    11761 gcgcctgtgt ttctggattt cgtcaggcgc tgaggctggc ggcctgctgt ccggaccgtc
    11821 gctcagtccg caggtcggcg atctcctcca actggcgttt gagcgcccgg atcgccgcct
    11881 tttcgtgcgg tttgaggtcc ttcagctcca gatgatccag cagcacggtc atcgcctcac
    11941 ccagtcgtcc gagttggcgg ccatagctgc cgaccttgcc gagcacctgc gcctccagcc
    12001 ccgggtcacc cgactggccc aggttgacgg tgaagaagct gaagtcgccc atggtccagg
    12061 accatgggtt gatggtctgt gtcagctggc cgggggccag cgctactttg aagtcggaca
    12121 tgacgtcgcc tccggggttc caacccaaag gggtgaaccc gcgccggagc gctcgcaagc
    12181 cgtgagggcc gacggcggcg ctgggcgccg caatcgcctg cgtcctaggc gtccttgtag
    12241 cgctggatcg ccgcgcggat caggtcggcg gtctgttcgg gttcagccca gccggtgatc
    12301 ttcaccgact tgcccttttc caggtccttg tagtgctgga agaagtgggc gatctgctcg
    12361 gtcaggatgc cggggagcga gcgccagctg tccacgcccg tgtagaacgg atgcagcgcg
    12421 tccaccggca cggccagcac cttttcgtcg ccgccggcct cgtcggtcat catcaggcag
    12481 ccgatgggcc gggcccggat gatcgcgccg ggcacgacgg gcgtctggcc gaccacgatg
    12541 atgtccatgg ggtcgccgtc gtcggccagg gtgtgcggga tgaagccgta gttgcccgga
    12601 tagaacatcg ccgtgtgcag gaagcggtcg acgaagagcg cgccggattc cttgtcgatc
    12661 tcatacttca ccggctcgcc gccctgcggg atctcgatga tggcgttgac gtcatagggc
    12721 gggttcacgc cgacggggat cttggagagg tccatgggga caagccttca aacacacctg
    12781 agggacggcg cgctctgtgg accattcgac tgccggacgg aaggctcaac gcgcgtcgac
    12841 agtccgcagc gagtcgaaag ggctgacaaa cccctcctga ccgcctatat tcccctcaac
    12901 atcgtccgtt tgcgctgtat ggcgcctacg agcggcgggc tccggcccgg ccgctctttt
    12961 ctttgccgga gaccaggcca gggcccatgc gtgggaaaac cgccgaggat cagaacctgc
    13021 tggagctgct cgaccccgtg gccgaggcgg cgggctacgc cattgtgcgc ctgcgcctga
    13081 tgggcggtga gcatgctagg cggctgcaga tcatggccga gcgtccctcc gacggcgaca
    13141 tgaacgtcga ggactgcgcg cggctctccc gcgccatctc cgagatcatg gacgccgccg
    13201 acccgatcgc cggagaatat acgcttgagg tctcctcgcc cggcgtcgac cgcccgctga
    13261 cccgcctggc cgacttcgcg gcctaccagg gctacgaggc ccgcatcgag ctcgaccgcc
    13321 tggccgaggg ccgcaagcgc ttcaagggtc tcctggtcgg cgtcgacgac ggccaggtgg
    13381 ctgtcgacct cgaaggcgag gaagagaccg ccatgatccc gttcgcctgg atcgtcgagg
    13441 ccaagctcgt tttgaccgac caactgatga agcggggcgc cgacgtccgc gccgcgcgcc
    13501 tgcaatc
//
LOCUS       DATAJL010000681         2030 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38141,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000681 DATAJL010000000
VERSION     DATAJL010000681.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2030
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38141"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2030)
                     /locus_tag="VHN39_13045"
     CDS             complement(<1..>2030)
                     /locus_tag="VHN39_13045"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2817317.1"
                     /translation="VVERLSRALGGPVPAEQQAQLISVPLRNKLLFLAIFVSSLPLIF
                     SAISFLYKFDRMISKHGFAVPQDEMAALYIWSAGLVGVCIVGAVSMAVLTSREVSRSA
                     ARLIEAMRRVESGQLDDAKLEVLSTDEYADINRGFGLMLDSLRQEQQMLEVTQDLAGE
                     LLLEVLIARIMTATTQLLSAERGSLLVYDEKTDELFSLYADGMETRQIRVPTDSGIAG
                     AVFTTGRTENVTDPYKDPRFNAEIDRRTGFLTHSILCVPVTNKAGARIGIAQALNKRG
                     GVFSAKDEARLKAFAAQIAVSLENAKLFDDVLSMKNYNESILKSTSNGIVTLDADGRI
                     VTANDAAETLLGLSREVMIDREAGEVFQGANGWIAESLAKTQVTGETGLAIDAELARG
                     DGAVATVNLTAMPLIDATDARIGSMLVLEDITEEKRVRSTMSRYMSKEVADQLLSAGE
                     LELGGKEQKVTVMFSDVRSFTSIAEALGPRETVSLLNEYFTEMVDVIFQHGGILDKYM
                     GDGIMALFGAPLVGPNDADNAVAVADAMMQRLVGLNVRRVAAGQVALEIGVGFSTGPT
                     VIGNIGSVRRLDYTVIGDTVNLASRLEGATKQYGAKILLSEMTVRELKKPATLRELDL
                     IRVKGKDRPVAVYESLGYRAQEPGLAALLELHAAGIGAYRDRDWAAAGRAFDG"
BASE COUNT          315 a          685 c          680 g          350 t
ORIGIN      
        1 ccgtcgaagg cgcggcccgc ggcggcccag tcgcggtcgc ggtaggcgcc aatgccggcg
       61 gcgtgcagct caagcagggc cgcaaggccg ggctcctggg cgcggtatcc gagcgattca
      121 tagactgcga ccgggcgatc cttgcccttg acgcggatca ggtcgagctc gcgcagggtc
      181 gcgggcttct tcagctcgcg caccgtcatc tctgacaaga ggatcttggc gccatactgc
      241 ttggtcgcgc cctccagccg cgaagcgaga ttcacggtgt cgccgatcac cgtgtagtct
      301 aggcgcctga ccgagccgat gttgccgatg accgtggggc cggtggagaa gccgacgccg
      361 atttccagcg ccacctggcc ggcggcgacg cggcggacgt tcaggccgac cagccgctgc
      421 atcatggcgt cggccaccgc cacggcgttg tccgcgtcgt tggggccgac cagcggcgcc
      481 ccgaacagcg ccatgatccc gtcgcccatg tatttgtcga ggatgccgcc gtgctggaaa
      541 atcacgtcga ccatctcggt gaaatactcg ttgagcagcg acaccgtctc gcgcgggccc
      601 agcgcctcgg cgatcgaggt gaagctccgc acgtcggaga acatcaccgt gaccttctgc
      661 tccttgccgc ccagctccag ttcgccggcc gagagcagct ggtcggcgac ctccttggac
      721 atatagcgcg acatggtcga gcggacccgc ttctcctcgg tgatgtcttc caggaccagc
      781 atggagccga tgcgcgcgtc ggtggcgtcg atcagcggca tggcggtgag gttcacggtg
      841 gccaccgcgc cgtcgccgcg ggccagctcc gcatcgatcg ccaggcccgt ctcgcccgtc
      901 acctgggtct tggcgaggct ctcggcgatc cagccgttgg cgccctggaa cacctcgccc
      961 gcctcgcggt cgatcatcac ctcgcgcgag aggccgagca gcgtctcggc ggcgtcattg
     1021 gccgtgacga tcctgccgtc ggcgtcgagg gtgacgatgc cgttcgacgt gctcttcagg
     1081 atgctctcgt tgtagttctt catgctgagc acgtcgtcga acagcttggc gttctccagg
     1141 ctgaccgcga tctgggcggc gaaggccttc agccgcgcct cgtccttggc cgagaacacg
     1201 ccgccgcgct tgttcagcgc ctgggcgatc ccgatccggg cgccggcctt gttggtcacc
     1261 ggcacgcaca ggatcgaatg ggtcaaaaag ccggtgcgcc ggtcgatctc ggcgttgaag
     1321 cgtgggtctt tgtaggggtc ggtgacgttc tccgttcgcc cggtggtgaa caccgccccg
     1381 gcgatgccgc tgtcggtcgg cacacggatc tgccgcgtct ccatgccgtc ggcgtagagg
     1441 ctgaagagct cgtcggtctt ctcgtcatag accagcagcg agccgcgctc ggcgctgagc
     1501 agctgggtgg tggcggtcat gatccgggcg atcagcacct ccagcaggag ttcgccggcc
     1561 aggtcctgcg tcacctcgag catctgctgc tcctggcgca gagaatcgag catcaggccg
     1621 aaaccgcggt tgatgtcggc gtattcatcg gtgctcagca cctcgagctt ggcgtcgtcg
     1681 agctggccgc tctcgacgcg ccgcatggcc tcgatcagtc gcgcggccga ccgcgacacc
     1741 tctcgagagg tcaggacggc catggagacc gcccccacaa tgcaaacccc gaccaggccg
     1801 gcgctccaga tgtagagcgc ggccatctcg tcctgcggca cggcgaaccc gtgcttcgag
     1861 atcatccggt cgaatttgta gaggaacgag atcgccgaga agatcagcgg cagcgaactc
     1921 acgaagatcg ccaggaacag cagcttgttg cgcaagggca ccgagatcag ctgcgcctgc
     1981 tgctcggcgg ggaccggccc gccgagtgcg cgggataggc gctccacgac
//
LOCUS       DATAJL010000682         6409 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_12145,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000682 DATAJL010000000
VERSION     DATAJL010000682.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6409
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12145"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1376)
                     /gene="ffh"
                     /locus_tag="VHN39_13050"
     CDS             complement(<1..1376)
                     /gene="ffh"
                     /locus_tag="VHN39_13050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEX2817318.1"
                     /translation="MFDALTDRLSSVFDRLSGRGVLSEKDVAEVMREIRVALLEADVA
                     LPVVRDFIAKATEAATGEAVIRSVRPADQVVKITYDGLVEMLGGEGEPEGLNIALNPP
                     TVILMAGLQGSGKTTTAAKLGLRLGKERKKVLLASLDTRRPAAMEQLATLATLAGVDS
                     LPIVVGQAAPDIARRALQSAKLQGYDVVILDTAGRTTLDEAMMSEAAEIAKIAKPSET
                     LLVADALTGQDAVRTAKAFHERLPLTGLILTRADGDGRGGAALSMRAVTGLPIKFLGT
                     SEKIDGLEAFDAARVAGRILGQGDIVALVEKATEEFDAAKAEAMARKLAKGQFDLDMM
                     AEQLSQMKRMGGMEGLMGMLPGVQKIKKQISEANINDKMVDRQAAIIGSMTKLERKKP
                     DILAASRKRRIAAGSGVDVAEVNRLLKQHRQMADAFKMMSKGGGKGFAQMAQMLGGAG
                     GGGMDRMK"
     gene            1912..3252
                     /locus_tag="VHN39_13055"
     CDS             1912..3252
                     /locus_tag="VHN39_13055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817319.1"
                     /translation="MPNSRLLTAIACLILAAGMALWSSPAAALPSFSQQTGEPCSQCH
                     VGAYGPQLKPYGRDFKLFGYVSGDTQNTAPPITAIVSGAFTETRADRTPLAHYAANDN
                     IAVTSVLLAYAGKIAGGVGTFAEVTYDSVRDKYAVSRIDIRRAFIGTVGGRDVVYGVD
                     VNNRPGLDDLWNSTPVFEFSTFTSQFAGTPSVSPLIDGKLSGRVAGLGGFAMWDGQLF
                     TEVAAYTQLDRNYLNRAGMPTPAAADRYEGTIPYWRLALQHDFSDRHYVEVGGYGVSA
                     RRFPGDVQMSGADTLTDVGLDATYQYTGSTRHFLATHATWIHEDDKLDAARVVNKTAA
                     SDHLDVFRADAIYSFDNTWTPAVELFHTTGSTDPKFVKTSNGSPNSDGYVLELAYMPW
                     GKKDSPVRWANFRLNARWVGYTCFNGKTAGASDYNTLMLGATMALAPFGGLVKR"
     gene            3249..3605
                     /locus_tag="VHN39_13060"
     CDS             3249..3605
                     /locus_tag="VHN39_13060"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEX2817320.1"
                     /translation="MSREPGTSVADALVKTYAVCGVVGVLALAGSAWAGTLSVDQKNL
                     KFSVRELKIAKGDSIEFTNSDDTSHNITISGQGFTANSGLQAPGKPFKAPFVKAGVYK
                     VSCGIHPNMRMTVIVE"
     gene            3602..6115
                     /locus_tag="VHN39_13065"
     CDS             3602..6115
                     /locus_tag="VHN39_13065"
                     /inference="COORDINATES: protein motif:HMM:NF013460.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817321.1"
                     /translation="MSVSERSSSPEGGARYPRTLRTLHWALALLFCLQIALILVFRQL
                     LSVDFANIVLSLHRSCGTAIWLLIVLRLAMGLRVRAPKAQAGWPRWQTVAAHAVHWGL
                     IAVLLAQPILGVMSAWSRGDEVLMLGLVKLPQLLTLTDAQGVTLKLLHRWTAYGLLGL
                     VAVHVGAVLFNRWIRKVSVMERMLSPPPANRLTNRVPLTIQLGLTCGLILALSAGAGL
                     YGANQYRTYSDARDRFDESAVSTLDDMRVTHLDLKSLTQRLAEGGSGSEAVVTEKARK
                     LVADIDGFRTRSTDAEVRASAAKAEVALKAVVAGPPTKVSLARVDGLFQDAVDGQTNV
                     VLQGRLQIREFAANGHDLIILILAPTVIFCAVLAFLLSRSVLIALSRARAVVQGVEAG
                     AAGEEIQVIGKGEFALLMRDTIRMRDTVEARQRAAARREMEHETQIEHERLAKDAAEA
                     ANKAKSEFLAIMSHEIRTPMNGVLGMVQAMELGELSPEQRERLVVIGQSGESLLAILN
                     DILDLSKIEAGKLDLEDVEFDLEQLVMTTHAGFVAVAEKKGVDLCLEFALDASGTYRG
                     DSVRLRQVLSNLVSNAVKFTAEGRVGIKVTRSDDHVRFAISDTGVGIPADRIGLLFDK
                     FVQADSSTTRKFGGTGLGLAICRELCEAMGGEVTVQSTAGEGSTFIVDLPLVRIGEAR
                     PAAAGVEYADISERPIRILAAEDNAVNQLVLKTLLGQAGIEPTIVENGEEAVAAWEAE
                     DWDVILMDIQMPVMDGPTATRLIRSREAETGRAPVPIIALTANAMTHQSESYRAAGMN
                     GMVAKPIKVSELFAAILEASNGGMAAQAGDDDAAGVVAA"
     gene            6185..>6409
                     /locus_tag="VHN39_13070"
     CDS             6185..>6409
                     /locus_tag="VHN39_13070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine methyltransferase"
                     /protein_id="HEX2817322.1"
                     /translation="MISYTLFETAIGWAGLAWGDKGLVGAYLPEAERENARRSFLRRY
                     PDAIETAPTEMVADAIAAIRELLTGQHTDLT"
BASE COUNT         1050 a         2207 c         2093 g         1059 t
ORIGIN      
        1 ttcttcatgc ggtccatgcc gccgccaccg gcgccgccca gcatctgcgc catctgggcg
       61 aagcccttgc cgccgccctt gctcatcatc ttgaaggcgt cggccatctg gcggtgctgt
      121 ttcagcaggc gattgacctc ggccacgtcg acgccggaac cggccgcgat ccgacgcttc
      181 cgcgaagcgg caagaatgtc gggcttcttg cgctcgagct tggtcatgga gccgatgatc
      241 gcggcctgcc ggtcgaccat cttgtcgttg atgttggctt cggagatctg cttcttgatc
      301 ttctggacgc cgggcaacat gcccatcagg ccttccatgc cgcccatgcg cttcatctgc
      361 gaaagctgct cggccatcat gtcgagatcg aactggccct tggccagctt cctggccatg
      421 gcttcggcct tggccgcgtc gaactcctcg gtggccttct cgaccagggc cacgatatcg
      481 ccctggccca ggatgcggcc ggccacgcgg gcggcgtcga aggcctccag gccgtcgatc
      541 ttctctgagg tgccgaggaa cttgatcggc aggccggtga ccgcgcgcat ggagagcgcc
      601 gcgccgccgc ggccgtcgcc gtcggcgcgg gtcaggatca ggccggtgag cggcaggcgt
      661 tcgtggaagg ccttggcggt gcgcaccgcg tcctggccgg tgagcgcatc ggcgaccaga
      721 agggtctccg acggcttggc gatcttcgcg atctccgcgg cctcgctcat catcgcttcg
      781 tcgagcgtgg tgcgcccggc ggtgtctagg atgaccacgt catagccctg cagcttcgcc
      841 gactgcagcg cgcggcgcgc gatgtcgggc gcggcctggc cgacgacgat cggcaggctg
      901 tcgacgcccg cgagcgtggc cagggtcgcc agctgctcca tggccgccgg ccgccgcgtg
      961 tcgagcgagg ccagcaggac cttcttgcgc tccttgccga ggcgcagtcc cagcttggcc
     1021 gcggtggtgg tcttgccgga gccctgcagg ccggccatca ggattacggt cggcgggttc
     1081 agggcgatgt tgagcccctc gggctcgccc tcaccaccca gcatttccac caggccgtcg
     1141 taggtgatct tgaccacctg gtcggcgggc cggaccgagc ggatcacagc ctcgccggtg
     1201 gcggcctcgg tggccttggc gatgaagtcg cggaccaccg gcagcgccac gtcggcctcg
     1261 agcagggcga cgcggatctc gcgcatcacc tcggcgacgt ccttctccga cagcacgccg
     1321 cgcccgctga ggcggtcgaa gacgctggag agccgatctg ttagcgcgtc aaacaaacgt
     1381 gtctcgtcct cgaagcccaa acgcaatcgg cccccgtgca cgattgcgtg gacggggggc
     1441 ctcgccgccc tcgtcccaga agctgggggt cgtggcggtg gagggcgctg accgaggttg
     1501 gcgccggaag ggcgcgctta tgcgcctaag aggggtaaga ggtcaaggaa ggcggtcttt
     1561 cgaccccttc catcgagcac tttggccgcc acgagattcg cgccgcagcc tgtcgggtgc
     1621 gaacagcgcg cgccctcaca gccttcatca actctgcccg ctccggcgaa tccggcgaat
     1681 ctatacctgc gtcaaatccg cccagttcta ggtctaccga acatagatac gcgaaatata
     1741 aacagagacg agggagactc ccatcacttc gtccgccgtt gttaacggaa ttttccggcc
     1801 ccgaaggtaa cttgttatct gtacagtttt gatctgtcct cgggggcggg cttgtccggt
     1861 ttggagaaag cgaaagcggc gtcggccgcc acacggtgcg cgctcaggcg catgccgaac
     1921 tcccgactcc tgacggccat cgcctgcctg atcctcgcag ctggaatggc gctgtggtca
     1981 agcccggccg ccgcactgcc cagcttctcg cagcagaccg gcgagccctg ctcgcagtgc
     2041 cacgtgggcg cctacgggcc gcagctcaag ccctatggcc gcgacttcaa gctgttcggc
     2101 tatgtcagcg gcgacaccca gaacaccgcc ccgccgatca cggcgatcgt ctccggcgcc
     2161 ttcaccgaga cccgggccga ccgcacgccg ctggcgcact atgcggccaa cgacaacatc
     2221 gcggtgacca gtgttcttct ggcctacgcc ggcaagatcg ccggcggcgt cgggaccttc
     2281 gcggaagtca cctacgactc ggtgcgcgac aagtacgcgg tctcccgcat cgacatccgg
     2341 cgggctttca tcggcacggt cggcggcagg gacgtggtct atggcgttga cgtcaacaac
     2401 cggccgggcc tggacgacct gtggaattcc acgccggtgt tcgaattcag caccttcacg
     2461 tcgcagttcg ccggaacccc ctcggtctcg ccgctgatcg acggcaagct ctccggacgg
     2521 gtcgcaggcc tcggcggctt cgccatgtgg gacggccagc tcttcaccga ggtcgccgcc
     2581 tacacgcagc tcgaccggaa ctacctgaac cgcgccggga tgccgacacc ggccgccgcc
     2641 gaccgctacg aggggaccat cccctactgg cgcctcgccc tgcagcacga cttttccgac
     2701 aggcactatg tggaggtggg cggctacggc gtatcggcca gacgtttccc aggtgacgtt
     2761 cagatgtcgg gagccgacac gctcaccgac gtcgggctcg atgccaccta tcagtacacc
     2821 ggctcgacgc gtcacttcct cgccacccat gccacctgga tccatgaaga tgacaagctc
     2881 gacgccgcgc gggttgtgaa caagaccgcc gcctcagatc acctggacgt cttccgcgcc
     2941 gacgcaatct acagtttcga caacacctgg acgccggcgg tggagctgtt ccacaccacc
     3001 ggctcgacgg acccgaaatt cgtcaagacc tccaacggca gcccaaattc cgacggctat
     3061 gtcctggagc tcgcctacat gccctggggc aaaaaggact cgcccgtccg ctgggcgaat
     3121 tttcggctga acgcccgctg ggtcggctac acctgcttca acggcaagac cgccggcgcc
     3181 tccgactaca acaccctgat gctgggcgcc accatggcgc tggccccatt cggcggcttg
     3241 gtgaagcgat gagccgggag cccgggacca gcgtcgcgga cgcgcttgtg aagacctacg
     3301 ccgtctgcgg cgtcgtgggc gtgctggcgc tcgccggctc cgcctgggcg ggcacgctct
     3361 ccgtcgacca gaagaacctg aagttcagcg tccgcgagct gaagatcgcc aagggcgact
     3421 ccatcgagtt caccaacagc gacgacacct cgcacaatat caccatcagc gggcagggat
     3481 tcacggccaa cagcggcctt caggccccgg gcaagccgtt caaggcgccg ttcgtcaagg
     3541 ccggcgtcta caaggtgagc tgcggcatcc atcccaacat gcgcatgacg gtcatcgtcg
     3601 aatgagcgtg tcggaaaggt cctcatcgcc ggagggcggc gcgcggtatc cgcggacgct
     3661 aaggaccctg cactgggccc tggcgctgct gttctgtctg cagatcgccc tcattctggt
     3721 gttccgccag ttgctgtcgg tcgacttcgc caacatcgtg ctcagcctgc accggtcctg
     3781 cggcacggcg atctggctcc tgatcgtgct gcgactggcg atgggattgc gcgtccgcgc
     3841 gccgaaggcc caggccggtt ggccgcgctg gcagaccgtg gcggcgcatg ccgtgcactg
     3901 gggcctgatc gccgtcctgc tcgcccagcc gattcttggc gtgatgtccg cctggtcgcg
     3961 cggcgacgag gttctgatgc tgggcctggt gaagctgccc cagctgctga ccctcaccga
     4021 cgcgcaaggc gtgacgctga agctgctgca ccgctggacg gcctatgggc tcctggggct
     4081 cgtcgccgtg cacgtgggcg cggtgctgtt caatcgctgg atccgcaagg tctcggtgat
     4141 ggagcggatg ctgtcgccgc cgcccgccaa ccggctcaca aaccgcgtgc ccctgaccat
     4201 ccaactgggg ctgacctgcg gcctgatcct ggcgctaagc gccggggccg gcctctacgg
     4261 cgccaaccag tatcgcacct atagcgacgc ccgggaccgg ttcgacgaaa gcgcggtttc
     4321 gactctcgac gacatgcgcg tgacgcacct ggacctgaag tcactgacgc agcgccttgc
     4381 cgagggcggt tccggctccg aggcggtggt gaccgagaaa gcccgcaagc tggtcgccga
     4441 tatcgacggc ttccgcaccc ggtccaccga cgccgaggtc cgggcctcgg ccgccaaggc
     4501 cgaagtcgcg ctgaaggcgg tcgtcgcggg gccgccgacc aaggtgagcc tggcgcgcgt
     4561 cgacgggctt ttccaagacg cggtcgatgg ccagaccaac gtggtgttgc agggccgcct
     4621 gcagattcgg gagttcgccg ccaacggcca cgacctgatt atccttatcc tggcgcctac
     4681 ggtgatattc tgcgcggtcc tggccttcct gctctctcgc agcgttttga tcgcgctctc
     4741 gcgggcccgc gccgtggtgc aaggcgtcga ggccggcgcc gccggcgaag agatacaggt
     4801 catcggcaag ggcgagttcg ccctgctgat gcgtgacacc atccgcatgc gcgacaccgt
     4861 cgaggcgcga caacgcgcgg cggcccggcg ggagatggag cacgagaccc agatcgagca
     4921 cgaacgcctg gccaaggacg cggccgaggc cgccaacaag gccaagagcg aattcctggc
     4981 gatcatgagc cacgagatca ggacgccgat gaacggtgtc ctgggcatgg tccaggcgat
     5041 ggagcttggc gagctctcgc ccgagcagcg cgaacgcctg gtggtgatcg gccagtccgg
     5101 cgaatccctg ctggcgatcc tcaacgacat cctggacctc tcgaagatcg aggccggcaa
     5161 gctcgacctg gaggacgtgg agttcgacct cgagcaactg gtgatgacca ctcacgctgg
     5221 cttcgtggcg gtggcggaaa agaagggcgt cgatctctgt ctggagttcg ccctcgacgc
     5281 cagcgggacc tatcgcggcg acagcgtccg gctgcgccag gtcctctcca atctggtctc
     5341 caacgcggtg aagttcaccg ccgagggccg tgtcgggatc aaggtcaccc gttccgacga
     5401 ccacgtccgg ttcgccatat ccgacactgg ggtcggcatc cccgccgacc gcatcggtct
     5461 gctgttcgac aagttcgtcc aggccgattc ctccacgacc cggaagttcg gcggcacggg
     5521 ccttggcctg gcgatctgcc gcgagctctg cgaagcgatg ggcggcgagg tcaccgtcca
     5581 gagcacggcg ggcgagggca gcaccttcat cgtcgacctg ccgctcgtcc gcattggcga
     5641 ggccaggccg gcggcggcgg gcgtcgagta cgccgacatc agcgaacggc ccatccgcat
     5701 cctggcggcc gaggacaacg ccgtgaacca gctcgtcctg aagaccctgc tgggacaggc
     5761 cgggatcgag ccgaccatcg tcgagaacgg cgaggaagcc gtcgccgcct gggaggccga
     5821 ggattgggac gtcatcctga tggacatcca gatgccggtg atggacggcc ccaccgccac
     5881 ccgcctgatc cgcagccgcg aggccgagac cggccgggcg cccgtgccga tcatcgcgct
     5941 caccgccaac gccatgaccc atcagtcgga gagctatcgc gccgcgggca tgaacggcat
     6001 ggtggccaag ccgatcaagg tcagtgagct attcgccgcg atccttgagg cctcgaacgg
     6061 cggcatggcc gcgcaggccg gcgacgacga cgctgcaggc gtggtcgcag cctgatcgaa
     6121 aagccgggcg attgatgtcc gaaagccgcc agcggatcgc cgcgaacggg cctatattcc
     6181 tcgcatgatc agctacaccc tcttcgaaac cgccattggc tgggcgggcc tggcgtgggg
     6241 cgacaaaggc cttgtcggcg cttacctgcc cgaggctgag cgggagaacg cgcgccgcag
     6301 tttcctgcgc cgctaccccg acgccatcga gacagcgccg acggagatgg tcgcagacgc
     6361 catcgccgcg atccgcgaat tgctcaccgg tcagcacacg gacctgacc
//
LOCUS       DATAJL010000683         2338 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_50940,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000683 DATAJL010000000
VERSION     DATAJL010000683.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_50940"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1777
                     /locus_tag="VHN39_13075"
     CDS             <1..1777
                     /locus_tag="VHN39_13075"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2817323.1"
                     /translation="NGQVVLKKGYGFASLAPDRPVDPDRTLFRVGSISKTFTWIALMK
                     EVEAGRMRLNQPVNLYLPEKVQVKDQGYDQPVRVANLMDHSAGFEDRALGQLIERNYD
                     RERPLDLYLRQERPKRVHAPGVVSSYSNYGAALAGEAATYTSGRPYERLIEDEILAPL
                     GMTHTTFREPHPVKAGLPGPMPARLVGDISDGYRWTPVGFQRRDYEFIGHGAPAGAGS
                     STAGDMARYMLMQLGGGQFAGATIYGPATAQAFRTPLRKTPLGINGWAHGFMVFDQPG
                     GHRGYGHGGATLSFFSNMVVTPDLNLGIFISTNTETGRPLVGRLPDRIVEHFYAAPEP
                     FPRPGSPELAQRAGEFSGYFLTTRRAYSGLEGFVDQFTGGASVDVTHDGKLVTSDGAG
                     VRTWVPEGPPDDGRFIATQGSERLVFDLADGGARAYHEASGSQLFERAPFWRQPQALI
                     ILAALTAAAALATFAGVVVRNRREFRENQIQSRASLVQNIQAVLWLVSFALFGLWASK
                     IGDVAQVMYRWPGALMIMASACALVAAGLTATTFLVLPAIWRGGRRVDSWTHLRKAFF
                     SLTVLIYAAFSVELALRGALSPWSG"
     gene            2060..>2338
                     /locus_tag="VHN39_13080"
     CDS             2060..>2338
                     /locus_tag="VHN39_13080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEX2817324.1"
                     /translation="MNQVLAALQRFGFGRLAAILGIAAGVAAALFFVTSGLGQPKALL
                     YSNLDLKEAGTITQALDQGNIKYEVKGDGSTIMVPRDQVASTRLMLSSK"
BASE COUNT          364 a          824 c          754 g          396 t
ORIGIN      
        1 gaacgggcag gtggtgctca agaagggcta tgggttcgcg agcctcgccc ccgaccgccc
       61 cgtcgatccg gaccgcaccc tcttccgcgt gggttcgatc tccaagacct tcacgtggat
      121 cgcgctcatg aaggaggtcg aggctggccg catgcgcctc aatcagccgg tcaacctcta
      181 cctgccggaa aaggtgcagg tgaaggacca gggctacgac cagccggtcc gggtggccaa
      241 cctgatggac cattccgcgg gcttcgagga ccgagcgctc ggccagctca tcgagcggaa
      301 ctacgaccgg gagcgcccgc tcgacctcta tctgcgccag gagcggccca agcgggtgca
      361 tgcgccgggc gtcgtctcca gctattcgaa ctacggcgcg gcgctggccg gcgaggcggc
      421 gacctacacc tccggacgcc cctacgagcg gctgatcgag gatgagattc tggcgcccct
      481 cgggatgacc cacaccacct tccgcgagcc gcacccggtg aaggcgggcc tccccggacc
      541 aatgccggcg cggctcgtcg gcgacatctc cgacggctac cgttggacgc ccgtgggctt
      601 ccagcgccgc gactatgagt tcatcggcca cggggcgccg gccggcgccg ggtcctccac
      661 cgccggggac atggcgcgct acatgctgat gcagctgggc ggcggccagt tcgcaggtgc
      721 gacgatctac ggccccgcga cggcccaggc gttccgcacc ccgctgcgta agacgccgct
      781 cggcatcaac ggctgggcgc acggcttcat ggtcttcgat cagccgggcg gccatcgcgg
      841 ctacggccac ggcggggcga cgctctcgtt cttctccaac atggtggtga cgcccgacct
      901 gaacctcgga atcttcatct ccaccaacac cgaaaccggt cggccgctgg tgggacgcct
      961 gcccgaccgg atcgtcgagc acttctacgc cgcgcccgag ccgttcccac ggccgggctc
     1021 gccagaactg gcccagcggg ccggcgagtt ttcgggctat ttcctgacca cacggcgcgc
     1081 ttattccggc ctcgagggtt tcgtcgacca gttcaccggc ggcgccagcg tcgacgtcac
     1141 ccacgacggc aagctggtca ccagcgacgg cgctggcgtc aggacctggg ttccggaggg
     1201 accgccggac gacggccgct tcatcgccac ccagggctcc gagcgcctgg tcttcgacct
     1261 ggccgacggc ggcgcacgcg cctaccatga ggccagcggg agccagctct tcgagcgcgc
     1321 gcccttctgg cgccagcccc aggcgctgat catcctggcc gcgctcaccg ccgccgcggc
     1381 gctcgcgacc ttcgccggcg tcgttgtgcg caaccggcgg gaattccgcg aaaaccagat
     1441 ccagagccgg gcgagcctgg tgcagaacat ccaggccgtg ctctggctgg tctcgttcgc
     1501 gctctttggc ctgtgggcct cgaagatagg cgacgtggcc caggtcatgt accgctggcc
     1561 aggcgccctg atgatcatgg cctcggcctg cgcgctcgtg gctgcgggcc tcaccgccac
     1621 caccttcctg gtgctgccgg ccatctggcg cggcgggcgg cgggtggact cctggaccca
     1681 ccttcgcaag gcgttcttca gccttacggt cctgatctac gccgcctttt ccgttgagct
     1741 ggcgctgcgc ggcgcgctca gcccctggag cggctagtgt cccgattccg aagttcgaca
     1801 acgcttgcgg ccagcgccgc acgaacttcg gaatcgatca ggacactagg aagtctttgt
     1861 tttcctagcg tgcttccttg gaattgaagt tcgctcggcg cttggcccta agcaaaggcg
     1921 aacttcaatt ccagcacgct aggcgccctt aaagggctgg cgtctaaacc ccgcgtttac
     1981 caagcactgg gtaaatcctg cctagcggtg ggcaaaattc gtctgctccc cgcttagggt
     2041 ttggggaagg acgccagcgt tgaaccaggt actggccgcg cttcagaggt ttgggtttgg
     2101 gcggctcgcc gccatcctcg gcatcgccgc gggcgtcgcc gcggcgctgt tcttcgtgac
     2161 ctcaggcctg gggcaaccca aggcgctcct ctattccaac ctcgatctga aggaagccgg
     2221 gacgatcacc caggcgctcg atcaagggaa catcaagtac gaggtcaagg gtgacggctc
     2281 gaccatcatg gtgccgcgcg accaggtggc ctccacccgc ctgatgctgt cgtccaag
//
LOCUS       DATAJL010000684         2372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_24940,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000684 DATAJL010000000
VERSION     DATAJL010000684.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24940"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1110
                     /locus_tag="VHN39_13085"
     CDS             <1..1110
                     /locus_tag="VHN39_13085"
                     /inference="COORDINATES: protein motif:HMM:NF019268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEX2817325.1"
                     /translation="PPAAAAAPAAPAGPTPLSTPAMSASLSSNADPLSADLGPLGKIW
                     VSGQVSVFGMSQTAAPDASQKKKGDISNIQVEVQKTDGVFQFYVQAGDYNFPSLGAGV
                     LSSPRLTESTFKYVPVAYIKIVPNAAFNVEIGELPTLIGAEYTFTFENLNIERGLLWN
                     QEPAISRGIQANYTQGPVAVSVSLNDGYFSSHYSTLSGLVTYTATMKDTIAVAASGNF
                     DKTSRSSFVTPIAQNNGTVWNVMWTHTDGPWVINPYLQYTTTPKDTAFGLGSSASTFG
                     GAVLAKYSFSPLFNLAGRVEYISSSGSQVSLLYGPKSDAWSFTLTPTFQFKTYFVRGE
                     MSYTKLDSATVGSEFGKFANKSEQTRLMVETGVLF"
     gene            1375..>2372
                     /locus_tag="VHN39_13090"
     CDS             1375..>2372
                     /locus_tag="VHN39_13090"
                     /inference="COORDINATES: protein motif:HMM:NF014740.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEX2817326.1"
                     /translation="MAFRAQTIVADVALASVAFALAYLVASSGAPALDITGVPALSLP
                     QLIVLYAALAGGFSMLFRRELSPWRYASIPDALVLARIAVLTVGVFLLWVFIIDRARG
                     LPRSTLFLAPMFQMVGSMGVRILRRALHEHALDSFSPLKTATDRVTQSPSLLLIGPPA
                     LADSYLRDIARSHDRTYTPVGIVGSDSRDVGQQVRGVCVIESLENLDEALADLRRWNR
                     YPRAILFLEEPGRLKGLTADQLGRLKTDGIRLLRLPSIVELAQHDGVTLLPMRDINIE
                     ELLAREPIELDRGAIGNLIRGRRVLVTGAGGSIGAELCRQVAAFHCTHLTLLDFSET"
BASE COUNT          375 a          889 c          687 g          421 t
ORIGIN      
        1 ccgccggcgg cggcggcggc tcccgcggcg ccggcgggcc cgacaccgct atcgacgccc
       61 gcgatgtcgg cctccctgtc atccaacgcc gatccgctga gcgccgatct cggtccgctt
      121 ggcaagatct gggtcagcgg ccaggtcagc gtcttcggca tgtcacagac cgccgcgccc
      181 gacgccagcc agaagaagaa gggcgacatc agcaacatcc aggtcgaggt ccagaagacc
      241 gacggggtct tccagttcta cgtccaggcc ggtgactaca acttcccctc gcttggcgcc
      301 ggggtcctaa gctccccgag gctcaccgaa agcaccttca agtacgtgcc ggtcgcctac
      361 atcaagatcg tgcccaacgc cgccttcaac gtcgagatcg gcgaactgcc gacgctgatc
      421 ggcgcggaat acaccttcac gttcgagaac ctgaacatcg agcgcggcct gctctggaac
      481 caggagccgg cgatcagccg cggcatccag gccaactaca cgcaagggcc ggtcgcggtc
      541 tccgtctcgc tcaacgacgg ctacttctcc agtcactaca gcacgctttc gggccttgtg
      601 acctacaccg ccaccatgaa ggacacgatc gcggtcgccg cctccggcaa cttcgacaag
      661 acctcgcgct cgagcttcgt gaccccgatc gcccaaaata acggcacggt ctggaacgtg
      721 atgtggaccc acaccgacgg gccctgggtg atcaacccct atctgcagta cacgaccacg
      781 cccaaggaca cggccttcgg cctgggcagc tccgcctcga cctttggcgg cgccgtcctg
      841 gcgaaatact ctttcagccc gctgttcaac ctcgcgggcc gggtggagta catctcctcc
      901 tcaggctccc aggtgagcct cctctacggg cccaagagcg acgcctggtc cttcaccctt
      961 accccgacgt tccagttcaa gacctacttc gtgcgcggtg agatgtccta caccaagctc
     1021 gactccgcca ccgtcggatc ggagttcggc aagttcgcca acaagtcaga gcaaacccgc
     1081 ttgatggtcg agaccggcgt cctgttctag ccattgtgga ggcgagcgct cgtcgctccg
     1141 ccttcctcgg cgcctgctct ggaaggccgc tgtcggaacc ccgacggcgg cttttccttg
     1201 cgtcaatctc cgccactttc taaggtccgc ccgccttgcg gatgcgcata gattgtgcgc
     1261 ggtgagcaac accctgtgcg ggagtatccg atcccgtcgg tttcggtaga cggtcgtacc
     1321 cccgggtcta tgttgacgat tcgcagagct aacggagtgc ggcgtatgga gcggatggcc
     1381 ttccgagccc agaccatcgt cgccgacgtg gctctggcct ccgtggcctt cgctctggcg
     1441 taccttgtgg cctcatccgg cgcaccggcc ctggacatca ccggcgttcc cgcgctcagc
     1501 ctgccgcagc ttatcgtgct ctacgcagcg ctggccggcg gcttcagcat gctgttccgc
     1561 cgcgaactct cgccgtggcg ctacgcctcc attccggacg ccctggtcct ggcccgcatc
     1621 gccgtcctga ccgtcggcgt cttcctcctg tgggtcttca tcatcgaccg cgcccgcggc
     1681 ctgccccgtt cgacgctgtt cctcgcgccc atgttccaga tggtgggctc catgggcgtg
     1741 cggatcctcc ggcgggccct gcacgaacac gctctcgaca gcttctcgcc gctgaagacc
     1801 gccaccgacc gggtcaccca gtcgccgtcc ctgctgctga tcggcccgcc ggcgctggcc
     1861 gacagctatc tgcgcgacat cgcccgcagc cacgaccgca cctacacgcc ggtcggcatc
     1921 gtcggctccg acagccgcga cgtgggccag caggtgcgcg gcgtctgtgt catcgagagc
     1981 ctcgaaaacc tcgacgaagc gctcgcggac cttcgccgct ggaaccgcta tccgcgcgcc
     2041 atcctgttcc tcgaggagcc cggtcgcctg aagggcctca ccgccgacca gctcggccgc
     2101 ctcaagaccg atggcatccg cctcctgcgt ctgccgtcca tcgtcgagct ggcgcagcac
     2161 gacggcgtca ccttgctgcc gatgcgcgac atcaacatcg aggagctgct ggcccgcgag
     2221 cccatcgagc tcgaccgcgg cgccattggc aacctgatcc gcggtcgccg cgtgctggtc
     2281 accggggccg gcggctccat cggcgctgaa ctctgccgcc aagtggcggc cttccactgc
     2341 acccacctca ctctgctcga cttttccgag ac
//
LOCUS       DATAJL010000685         1611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_24945,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000685 DATAJL010000000
VERSION     DATAJL010000685.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1611
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24945"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..361
                     /locus_tag="VHN39_13095"
     CDS             <1..361
                     /locus_tag="VHN39_13095"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEX2817327.1"
                     /translation="RAPPVRGPFEAYFKGDARALETVPWKAAGTAFQLKVWEALCTIP
                     AGKTLSYAGLAERIGRPTAVRAVGLANGANPVAVVVPCHRVIGTNGSLTGYGGGLPRK
                     RWLLDLEGARFKGQLAA"
     gene            442..1032
                     /locus_tag="VHN39_13100"
     CDS             442..1032
                     /locus_tag="VHN39_13100"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEX2817328.1"
                     /translation="MEEFLQQYGPIGIFLGAGFEGQTALIVGGILARQHILQLWLVLA
                     CATAGSGIVDHLLFVAGRQFRTHRWVVRATQQVAFARALTFIEKYPISYILAFRFIFG
                     LRVASPIAIGVSQVPTWRFTLLNIAGAVIWAGAFTMAGFIFGEAIHNLLGRGHHAGRW
                     TLISAGGVIVVVGLIWAVRYLLRRRKARAEKAVQDS"
     gene            1217..>1611
                     /locus_tag="VHN39_13105"
     CDS             1217..>1611
                     /locus_tag="VHN39_13105"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2817329.1"
                     /translation="MSLTYDDALNSQLDNAVPELKRLGMKATFFLTENNVHWRLADWE
                     ALARDGNEVANHTMTHPCALGRYTADRLEHAEIGRMEGFLDTHFGADRERTFAYPCGY
                     LGVGRGGRHERYSRYRRVLERDGVVAARTT"
BASE COUNT          225 a          569 c          561 g          256 t
ORIGIN      
        1 ccgcgcgccg ccggttcgcg ggcccttcga ggcctatttc aagggcgacg cccgcgcgct
       61 cgaaaccgtg ccgtggaagg cggcgggcac ggctttccag ctgaaggtct gggaggcgct
      121 ctgcacgatt cccgccggga agaccctgag ctatgcgggc ctcgccgagc gcatcggccg
      181 ccccacggcc gtgcgcgccg tgggcctggc gaacggggcc aacccggtcg cggtggtggt
      241 gccctgccat cgggtgatcg ggaccaacgg ctcgctgacc ggctacggcg gcggccttcc
      301 ccgcaagcgc tggctgctgg acctcgaagg cgcccgcttc aagggtcagc tcgcggcctg
      361 attccaacct cgcgggatcg acggatgacc cacgcccggg ctgtgctatg agcgctttcc
      421 cgagcgttct ccggcgaggc gatggaagag tttctgcaac agtacgggcc gatcgggatt
      481 ttcctgggcg ccggcttcga gggccagacg gcgctgatcg tcggcggcat cctcgcgcgt
      541 cagcacatcc tgcagctttg gctggtgctg gcctgcgcga cggcgggctc cgggatcgtc
      601 gaccacctgc tgttcgtcgc cggccgccag ttccgcaccc atcgctgggt ggtgcgcgcg
      661 acgcagcagg tcgctttcgc ccgcgcgctg acgttcatcg agaaatatcc gatcagctac
      721 atcctggcct tccgcttcat cttcggcctt cgggtggcga gcccgatcgc catcggggtc
      781 tcgcaggtgc cgacgtggcg cttcaccctg ctgaacatcg ccggcgcggt gatctgggcg
      841 ggcgccttca ccatggcggg cttcatcttc ggcgaggcga tccacaatct gctgggcagg
      901 ggtcaccacg ccgggcgctg gacgctgatt tccgcgggcg gcgtgatcgt cgtggtgggg
      961 ctcatctggg cggtccgcta cctgttgcgg cggcgcaagg cccgggcgga aaaagcggtc
     1021 caggactcct gagccgcgag gtccgttgca ggaacgcatc gccaagcgta gccgttggtg
     1081 acgcatgggc gactctcgac tttcccgacg atcacttttc gccgccgccg ccgcggcggg
     1141 cctcggcagt tcggccaggg cgcagcccga tcgggcccca ctcgacaggg cctggccgga
     1201 cggcgcgcgc gcggcggtga gcctgaccta tgacgacgcc ctgaacagcc agctcgacaa
     1261 cgccgtcccg gagctcaagc ggctgggcat gaaggcgacc ttcttcctga ccgaaaacaa
     1321 cgtccactgg cggctcgccg actgggaagc cctggcgcgc gacggcaacg aggtcgccaa
     1381 ccacaccatg acccatccct gcgcgctcgg ccgctacacg gccgatcggc tcgagcacgc
     1441 ggagatcggc cggatggagg gcttcctcga cacccacttc ggcgccgacc gggaacggac
     1501 cttcgcctac ccctgcggct acctcggtgt cgggcgcggc ggccggcacg agcgctacag
     1561 ccgctatcgc cgggtgctgg aacgcgacgg cgtggtcgcc gcgcgcacga c
//
LOCUS       DATAJL010000686         2542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95347,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000686 DATAJL010000000
VERSION     DATAJL010000686.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95347"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..726
                     /locus_tag="VHN39_13110"
     CDS             <1..726
                     /locus_tag="VHN39_13110"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CaiB/BaiF CoA-transferase family protein"
                     /protein_id="HEX2817330.1"
                     /translation="PCSTAVPISDLNAGVFGAVGILAALQSRHVTGKGQHVETSLFES
                     AMAYTIWETGMYLTTGAIPQRNGTRHRLAAPYEALRTADGHVVVGVNSQRLWKRFCEA
                     VGEPGLAEEPGFNRPALRVENRDALQTRLEGILGRDTSANWVLKLEAVGVPAGPLNNI
                     AEAWDDPQIKARGLLADVDGRQFVRTPIKLHDTPVELTRGPAEVGQHTREVLSEGGWS
                     DAEIDALIAEGAAATERRMEVSA"
     gene            723..1475
                     /locus_tag="VHN39_13115"
     CDS             723..1475
                     /locus_tag="VHN39_13115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX2817331.1"
                     /translation="MSGAVHVQPISEAVVLLEIDNPPMNPLGVEMRQTFMDALDQVET
                     NDALRCLIVTGKGRAFCAGDDLKNVGPGGEDLAGFGRLLDRLEATRVPVIAAVNGWCV
                     GGGFELACCCDIRIASTEAKFVCAGVNVGLMASTYRLPRLIGVSRAKAMLLTGLPHDA
                     ETAERYGLVTGLHAPEDLRGAAIALAERIASRAPLSVEATKRTANRALDLSPEDWGAI
                     AAPELRVLRKSNDHHAAVAAFRERKDPVFTRS"
     gene            complement(1462..2064)
                     /locus_tag="VHN39_13120"
     CDS             complement(1462..2064)
                     /locus_tag="VHN39_13120"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2817332.1"
                     /translation="MRNLALCAAAAAGLLLATTAGATEFVQNGGFETGDLTNWTKVGN
                     FTGFNGVIPVAAHTGGFGLADGNFPSQGLAGVSQVLSTTAGQDYEISLWWRTTGANDG
                     DNQLYQVMWDTIVVGQIQGSAASNTFTNLTYNVVGAGNDTLTVVGFSTSGHNFTDDIS
                     VTDMAVTGGVPEPATWAMLIAGFGGIGAMMRRRRASPSCA"
     gene            2266..>2542
                     /locus_tag="VHN39_13125"
     CDS             2266..>2542
                     /locus_tag="VHN39_13125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817333.1"
                     /translation="MAETAEEVLIEQIYGAALDAARWPVLLEAVADTIGAGNGVMTRF
                     NNETALGESLPFRCDEVALRAYDDYYFQKNVFTLVGDIAAWRRGWRPT"
BASE COUNT          402 a          837 c          889 g          414 t
ORIGIN      
        1 ccgtgctcga ccgccgtgcc gatttccgat ctcaacgccg gggtgttcgg cgcggtgggc
       61 atcctcgcgg ccctgcagag ccgtcatgtc accggcaagg gccagcatgt ggagacatcg
      121 cttttcgagt cggcgatggc ctacacgatc tgggagacgg gcatgtacct gaccacaggc
      181 gcgatcccgc agcgcaacgg gacccgccat cgcctggccg cgccctatga ggcgctcagg
      241 accgccgacg ggcacgtggt ggtgggcgtc aacagccagc ggctgtggaa gcggttctgc
      301 gaggcggtcg gcgagccggg gttggcggag gagccgggct tcaaccgccc ggcgcttcgg
      361 gtcgaaaacc gcgacgccct gcagacgcgg cttgagggta tcctggggcg cgacacctcg
      421 gccaactggg tgttgaagct ggaggccgtg ggcgtgcccg ccgggccgct gaacaatatc
      481 gccgaggcgt gggacgatcc gcagatcaag gcccggggtc ttctggccga cgtcgatggc
      541 cgccagttcg tccgcacgcc gatcaagctg catgacacgc ccgtcgagct gacccgtggc
      601 cccgccgagg ttggccaaca cacccgcgag gtgctgagcg agggtggatg gtcggacgcc
      661 gagatcgacg ccctgatcgc cgagggggcc gcggcgacgg aacgcaggat ggaggtctcc
      721 gcatgagcgg cgcggttcac gttcagccga tcagcgaggc cgtggtcctg ctggagatcg
      781 acaacccgcc catgaacccc ctgggcgtcg agatgcgcca gaccttcatg gacgcgttgg
      841 accaggtgga gacgaacgat gcgctccgct gcctgattgt caccggcaag ggcagggcgt
      901 tctgcgccgg cgacgacctg aagaacgtgg gacccggcgg cgaggacctg gcgggattcg
      961 gacgcctgct ggatcggctt gaggcgacgc gggttcccgt gatcgccgcg gtcaacggct
     1021 ggtgcgtcgg gggcggcttc gagctcgcct gctgctgcga catccggatc gcctcgacgg
     1081 aagccaagtt cgtctgcgcg ggcgtcaatg tcgggctgat ggcctccacc tatcgcctgc
     1141 cgaggctgat cggtgtctcc cgcgccaagg ccatgttgct caccggtctg ccgcacgacg
     1201 ctgagaccgc cgagcgctat ggcctggtca ccggcctgca tgcgcccgaa gacctgcgcg
     1261 gcgccgccat cgcgctcgct gagcgcatcg ccagccgcgc gccgctgtcg gtggaggcca
     1321 ccaagcgcac cgccaaccgc gcgctcgacc tctcgccgga agactggggc gccatcgccg
     1381 cgccggagct gcgggtcttg cgcaaatcca acgaccatca cgccgccgtc gccgccttcc
     1441 gcgagcgcaa ggacccggtg tttacgcgca gctaggcgag gcgcgccgcc gccgcatcat
     1501 cgcgccgatc ccgccgaagc cggcgatcag catcgcccag gtcgcgggct ccggcacgcc
     1561 gccggtcacc gccatgtctg tgaccgaaat gtcgtcggtg aagttgtgtc cggaggtgct
     1621 gaaacccacc acggtcaggg tgtcattgcc ggccccgacg acgttgtagg tcaggttggt
     1681 aaaggtgttg ctggcggctg agccctgaat ctggcccacg acaatggtgt cccacatgac
     1741 ctggtacagc tgattgtcgc catcgttggc gcccgtggtt ctccaccaca gggaaatctc
     1801 atagtcctgc ccggcggtcg tggagagaac ctgggagacg cccgccaaac cctggctcgg
     1861 gaagttgccg tccgccaggc cgaagccgcc ggtgtgggcg gcgacgggga tcacgccgtt
     1921 gaagcccgtg aagttgccga ccttggtcca gtttgtcagg tcgccggtct cgaagccgcc
     1981 gttctggacg aattccgtcg ccccggcggt tgtggccaga agcagtccgg ccgccgcggc
     2041 cgcacaaagc gcaagatttc gcatcgcact cacccttttg gttttcaata tggggcgagg
     2101 ggctgcgccc aaccgccctg taagcttcag cgttccacgg gtgcggcgat ggccgcatca
     2161 cgcatttgca tgatgctggc gtaaccgcgt tcggagagct tagtctccga cctgaactca
     2221 ggcggatcgc ggtcgctccg accggccgcc gcacggacgc gcgccttggc tgagaccgcc
     2281 gaagaggttt tgattgagca gatctatggc gcggcgctgg acgccgcgcg gtggccggtg
     2341 ctgctcgagg cggtggctga caccatcggc gcgggcaacg gggtgatgac ccggttcaac
     2401 aacgagacgg cgcttgggga gagcctgccg ttccgctgcg atgaagtcgc gctcagggcc
     2461 tacgacgact actattttca gaagaacgtc ttcacccttg ttggggacat cgcggcttgg
     2521 cggcgcggct ggcggccaac ag
//
LOCUS       DATAJL010000687         3188 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95351,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000687 DATAJL010000000
VERSION     DATAJL010000687.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3188
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95351"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..475)
                     /locus_tag="VHN39_13130"
     CDS             complement(<1..475)
                     /locus_tag="VHN39_13130"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX2817334.1"
                     /translation="MALLDWIAPESGLRVEGEGVSLRPPRASDYAEWRELRAVSRAFL
                     QPWEPTWPADDLGRAAYRRRLTAYARDREAGAAWPFFVFRAEDDELTGGITLSNVRRG
                     VAQMGSVGYWCGRPYARHGHTLAAVRALSDFAFRTLGLHRLEAACIPENAPSRKLL"
     gene            635..1858
                     /locus_tag="VHN39_13135"
     CDS             635..1858
                     /locus_tag="VHN39_13135"
                     /inference="COORDINATES: protein motif:HMM:NF013884.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEX2817335.1"
                     /translation="MTTANGPDRLHGLDAVRGYALLLGIVFHATASFLPGPQVWPVAD
                     THRSLTLAGIFFISHMFRMTTFFLIAGFFAHLVIEKRGVAAFVRDRAKRIALPLVVGW
                     PILFPAILAAIVYGAYVATGHLPKPPPPAAHPVPFAFPLSHLWFLYVLLLFYAAALAL
                     RGLVLRLDLGGRLRAGADDVVATLVESSAAPLVLAAPVALVFYVSSPWLAWFGIPGPD
                     SSLIPNLPAAVEYFAAFGFGWLLHRQPGLLNVIGRRWPLHLAAAVGLTALCVAIVGLT
                     PVVVPAQPGLQRAAYVAAYSLAMWTWTFAAIGLALRFLSDHSPVRRYIADSSYWLYLI
                     HLPLVIALQAMVSRLDWPWEVKILVILGIAFPLMFASYQLLVRRSFIGAILNGARAPK
                     PSKPAALTVQPELAR"
     gene            1855..2472
                     /locus_tag="VHN39_13140"
     CDS             1855..2472
                     /locus_tag="VHN39_13140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817336.1"
                     /translation="MNVDSARDDLAFMRALVEPGDAWQKQFGEAYSAAGLCYCVQMLL
                     HGGQFFGLVPPSGPIALTVGLGPTVVFLLLLIWIIRRNPRPAGGSATSRAVNSVFGAV
                     GFTNMALILTIGSIAWRWHSINTWLIYPCVVMILQGLAWLVAYMLRRRPWLAGVAAGW
                     FATGVAMAYFIDNPAGFVISAGVGMFAFMLAPGLFLLRQGRTADA"
     gene            2474..2794
                     /locus_tag="VHN39_13145"
     CDS             2474..2794
                     /locus_tag="VHN39_13145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018080416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2817337.1"
                     /translation="MTGSASSPAFGIGKIDDVIHGRLRLGVMAYLANAEVADFNELKA
                     ILEVTQGNLSVQLRKLEDAKYVAIEKGYLGRKPRTQVRITPAGRKAFAVYLEALGRLI
                     GPQG"
     gene            complement(2828..>3188)
                     /locus_tag="VHN39_13150"
     CDS             complement(2828..>3188)
                     /locus_tag="VHN39_13150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEX2817338.1"
                     /translation="GCAAKDAAELARVAAGEIAGMLTPVGYSELARAKAQLKGAMFMG
                     REGALARAEQAAGQALLFGRTLDPAEVAAEVDAVTPADLVKLTEQILAHKRCAVAVLG
                     PKTSLKAAPAFEIALFG"
BASE COUNT          416 a         1108 c         1105 g          559 t
ORIGIN      
        1 tgagcagttt gcgggagggc gcgttctcgg ggatgcaggc ggcttccagg cggtggaggc
       61 cgagcgtgcg gaaggcgaag tcgctgagcg cccggacggc ggcgagcgta tggccgtggc
      121 gggcgtaggg ccgcccgcac cagtagccca ccgagcccat ctgggcgacg ccgcggcgca
      181 cgttggacag cgtgatcccg ccggtgagct catcgtcctc agcgcggaag acgaagaacg
      241 gccaggcggc gccggcttcg cggtcgcggg cgtaggcggt gaggcggcgg cggtaggccg
      301 ctcggcccag gtcgtcggcg ggccaggtgg gctcccaggg ctgcaggaag gcgcggctga
      361 cggcgcgcag ttcgcgccac tccgcatagt ccgaggcccg gggcgggcgc aagctgacgc
      421 cctcgccctc gacgcgaagt ccgctctccg gcgcgatcca gtccagcagg gccatgggcg
      481 gtgagggtcg cccaattcgc ccgtgggtca agtcgggatc tctgtttcat gatagacttg
      541 tttacataat agactagttg atctatgagg attccaacgc ccgagcgccg ggcgatccgc
      601 ctgttcgccc agctcgccga ggaagggaaa cccgatgacg accgccaatg gaccagatcg
      661 cctgcacggg ctcgacgcgg tgaggggcta cgccctgctg ctggggatcg tgtttcacgc
      721 cacggcctcg ttcctgccgg gaccgcaggt ctggccggtg gccgacaccc acaggagcct
      781 gaccctggcc gggatattct tcatctcgca catgttccgg atgaccacct tcttcctgat
      841 cgccggcttc ttcgcgcatc tggtgatcga aaagcgcggg gtcgcggcct tcgtcaggga
      901 ccgggccaag cgtatcgcac tgcccctggt ggtcggctgg ccgatcctgt tcccggcgat
      961 cctggcggcc atcgtctatg gggcctatgt cgccaccggc cacctgccga agccgccgcc
     1021 tccggccgcc cacccggttc cgttcgcctt cccgctgagc cacctgtggt tcctctatgt
     1081 gctgctgctg ttctatgccg cggcgctcgc gctgcgcggc ctggtgctga ggctggacct
     1141 gggcggacgc ctgcgggccg gcgccgacga cgtggtcgcg accctggtgg aatcctcagc
     1201 cgccccgctc gtgctcgccg cgccggtcgc gctggtgttc tatgtctcca gcccctggct
     1261 ggcctggttc ggcataccgg ggccggactc ctcgctgatc cccaacctgc cggcggcggt
     1321 cgagtatttc gcggccttcg gcttcggctg gctcctgcac cgccagcccg ggctgctgaa
     1381 cgtgatcggc cgccgctggc cgctgcatct cgcggccgcc gtcgggctca ccgccctttg
     1441 cgtcgccata gtcggcctca cgcccgtggt cgtcccggcc cagcccggcc tgcagcgcgc
     1501 ggcctatgtg gcggcctaca gcctggccat gtggacctgg accttcgcgg cgatcggcct
     1561 ggcgctccgg ttcctgtcgg atcacagccc ggtgcggcgc tacatcgccg actcgtcgta
     1621 ttggctgtac ctgatccatc tgccgctggt gatcgcgctg caggcgatgg tgtcgcggct
     1681 cgactggccc tgggaggtca agatcctggt gatcctcggt atcgccttcc ccctgatgtt
     1741 cgccagctac cagcttctgg tgcgccgcag cttcatcggc gccattctga acggcgccag
     1801 ggcgccgaag ccttcgaagc ccgccgccct caccgtgcaa ccggagctcg cccgatgaac
     1861 gtcgacagcg cacgtgacga cctggcgttc atgcgcgccc tcgtggagcc aggcgacgcc
     1921 tggcagaagc agttcggcga ggcctattcc gcggccggcc tctgctactg cgtccagatg
     1981 ctgctgcacg gcggccagtt cttcggcctg gttccgccgt cgggaccgat cgcgctgacg
     2041 gtcggcctgg gtccgaccgt ggtcttcctg ctgctgctga tctggatcat ccggcgcaac
     2101 ccgcggccgg ccggcggcag cgcgacgtca agggcggtga actccgtgtt cggcgcggtg
     2161 ggcttcacca acatggcgct gatcctgacg atcggttcga ttgcctggcg ctggcacagc
     2221 atcaacacct ggctgatcta cccctgcgtg gtgatgatcc tgcagggcct ggcctggctg
     2281 gtcgcttaca tgcttaggcg ccggccgtgg ctggcggggg tcgcggcggg ctggttcgcc
     2341 accggcgtgg ccatggccta tttcatcgac aatcccgcgg ggttcgtgat ctcggccggc
     2401 gtcggcatgt tcgccttcat gctcgcgccg gggctcttcc tgctgcgcca gggccggaca
     2461 gcggacgcct gacttgactg gctccgcctc ctctcccgcc ttcggcatcg gcaagatcga
     2521 tgacgtgatc cacgggcgcc tgcgcctggg cgtcatggcc tatctggcca atgccgaggt
     2581 cgccgacttc aacgagttga aggcgatcct ggaggtcacc caaggcaacc tgtcggtcca
     2641 gctgcgcaag ctggaggacg cgaaatatgt ggcgatcgag aaaggctacc tgggacgcaa
     2701 accccgcacc caggtcagga tcacgccggc ggggcgcaag gccttcgcgg tctatctgga
     2761 agctctgggc cggctgatcg gaccgcaggg gtaggcgcct cccctgcccg ctgcgcggga
     2821 agggacgcta cccgaacaac gcaatctcga acgccggcgc ggccttcagc gaggtcttcg
     2881 ggcccagcac cgccacggcg cagcgcttgt gggcgaggat ctgttcggtg agcttcacca
     2941 ggtcggcggg ggtgaccgca tccacctcgg cggcgacctc ggcggggtca agcgtgcggc
     3001 cgaacagcag cgcctggccc gcggcctgtt cggcgcgggc cagagcgcct tcgcggccca
     3061 tgaacatggc gcccttgagc tgggccttgg cgcgggcgag ttcggagtag ccgacggggg
     3121 tcagcatgcc ggcgatctcg cccgccgcca cccgggccag ttccgcggcg tccttggccg
     3181 cgcagccg
//
LOCUS       DATAJL010000688         2146 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62150,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000688 DATAJL010000000
VERSION     DATAJL010000688.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62150"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..672
                     /locus_tag="VHN39_13155"
     CDS             <1..672
                     /locus_tag="VHN39_13155"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2817339.1"
                     /translation="GALVVGCGLRAEDSEETVRLVRAAGGAMVSMHPCDLTKPAECKA
                     LVDLAIATYGRLDVLFNNAAMAYFNWIEDISDEEWDRNRREEVDLVFYLTRAAWPHLK
                     ASHGVLVNTASLNALLSFKGHASLAHTTAKAGIIGMTRQLAMEGREFGIRANSISPGV
                     IETNQTREQLKDPEWSSYMLGKTLLGRLGRPDEVANVAVFLASDQSSYVTGVDIVVDG
                     GMKVW"
     gene            complement(718..1791)
                     /locus_tag="VHN39_13160"
     CDS             complement(718..1791)
                     /locus_tag="VHN39_13160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018082805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkene reductase"
                     /protein_id="HEX2817340.1"
                     /translation="MDQLFTPVRVGRYQLTNRLVMAPMTRSRAKPDGTPGDLAAEYYS
                     QRADLGLVVSEGTQPSDDGQGYLTTPGIYTPAHMAGWKKVATAVHDKGGRFFIQLMHV
                     GRMSHPDNTPHHRQSVAPSAIAPNTPMFTAKGMQDIPTPRALTAEEVRQTVFDFRRAA
                     RCAIEAGADGVEVHGANGYIVQQFLAASSNTRADEYGGSIQNRTRFAVEVMTAIAQEI
                     GADRTAIRLSPGLAMWGIEEGPEGPDLYRYLVDELDKLRLAYLHIVDTGDARLLSDIR
                     TLWRQPLVLNRPGRPRDQIGADVASGLADLETYGQMVLANPDFITRLKTGAPMNTADR
                     ATFFGGGAEGYVDYPALDAVRSA"
     gene            complement(1918..>2146)
                     /locus_tag="VHN39_13165"
     CDS             complement(1918..>2146)
                     /locus_tag="VHN39_13165"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2817341.1"
                     /translation="LYWDTAISFGDPILNMLRDVVGLDQVLFGSDFPYMRRDLAVGSV
                     QKLEQTHVLSADERTRVLSGNAVKLFPRLAR"
BASE COUNT          344 a          692 c          756 g          354 t
ORIGIN      
        1 ggcgcgctgg tcgtcgggtg cggcctccgc gcggaggact ccgaggagac cgtccgcctg
       61 gtgcgagcgg ccggcggcgc gatggtgtcg atgcatccct gcgacctgac caagccggcg
      121 gaatgcaagg cgctcgttga tcttgcgatc gcgacctatg ggcggctcga cgtgctcttc
      181 aacaacgccg ccatggccta cttcaactgg atcgaggaca tctccgacga ggaatgggac
      241 cgcaatcggc gcgaagaggt cgacctggtg ttctacttga cccgcgcggc gtggccgcac
      301 ctgaaggcga gccacggcgt gctcgtgaac accgcctcgc tcaatgccct cctcagcttc
      361 aagggtcacg cctccctggc ccatacgacg gccaaggcgg ggatcatcgg catgacgcgc
      421 caactggcga tggaggggcg cgagtttggc attcgcgcca attcgatctc cccgggcgtg
      481 atcgagacca accagacgcg ggaacagctg aaggacccag aatggtccag ctacatgctg
      541 ggcaagaccc tgctcggccg gctgggccgc cccgacgagg tcgcgaatgt agcggtgttc
      601 ctggcgtccg atcaaagctc gtatgtcacc ggcgtcgaca tcgtcgtcga cggcggcatg
      661 aaagtctggt gatcggctct gtcgggacct ggccgcacag gtcgatcgct gggctcccta
      721 cgctgacctg acggcgtcga gcgcggggta gtcgacgtaa ccctccgcgc cgcccccgaa
      781 gaaggtggcg cgatcggcgg tgttcatcgg ggcgccggtc ttcagccggg tgatgaaatc
      841 cgggttggcg agcaccatct ggccgtaggt ctccaggtcg gccaggcccg acgccacgtc
      901 ggcgccgatc tggtcgcggg ggcggccagg cctgttgagg accaggggct gccgccacag
      961 cgtgcggatg tctgacagca gccgggcgtc gcccgtatcg acgatgtgca ggtaggccag
     1021 ccgaagcttg tcgagttcgt cgaccagata gcggtagagg tcgggcccct ccggaccctc
     1081 ctcgatcccc cacatggcga ggcccggcga caggcggatg gccgtccggt ccgcaccaat
     1141 ctcctgggcg atcgccgtca tcacctcgac ggcgaagcgg gtccggtttt ggatcgagcc
     1201 gccatactca tccgctcggg tgttcgagct cgcggccagg aactgctgga cgatgtagcc
     1261 attggcgccg tgtacctcga ccccgtcggc gccagcctcg atggcacagc gcgccgcgcg
     1321 ccggaagtcg aagacggtct ggcgcacctc ctccgccgtc agcgcccgtg gcgtcggaat
     1381 gtcctgcatc cccttcgctg tgaacattgg cgtattgggc gcgatggcgg acggggccac
     1441 ggactggcgg tggtggggcg tgttgtcggg gtgcgacata cgccccacgt gcatgagctg
     1501 gatgaagaag cggccgccct tgtcgtgaac cgcggtggcc accttcttcc acccggccat
     1561 gtgcgcgggc gtgtagatgc ccggcgtcgt gagatagccc tggccgtcgt cggagggctg
     1621 ggtgccttcg gagacgacca ggccgaggtc ggcgcgctgg gaatagtact cggcggccag
     1681 atcccccggc gtcccgtccg gcttcgcgcg gctgcgggtc atgggagcca tgaccaggcg
     1741 gtttgtcagc tggtagcgtc cgacacggac aggcgtgaag agctggtcca tcgagatggg
     1801 tccttgtgag gggtgacgcc agccatccgt atcgccgcga cggcgaccac ttcttcatcg
     1861 gccaggcgat gtcggatgaa gaccatgccg aggccgccta gggactggcg cgcggcgtca
     1921 tcgggccagc cgcgggaaca gcttgacggc gttgccgctc aggaccctgg tccgctcgtc
     1981 ggccgacagg acgtgggtct gctcaagctt ctggacggag cccaccgcga ggtcccggcg
     2041 catgtacgga aagtcagacc cgaacaggac ctggtcgagg cccacgacgt cgcgcagcat
     2101 gttgaggatc ggatcgccga aggagatcgc cgtgtcccaa tagagc
//
LOCUS       DATAJL010000689         3012 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51023,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000689 DATAJL010000000
VERSION     DATAJL010000689.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51023"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..295
                     /locus_tag="VHN39_13170"
     CDS             <1..295
                     /locus_tag="VHN39_13170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX2817342.1"
                     /translation="LPNTLCIATPGFPSDVQVMGLDLAGVMVSAGSACSSGKVKASPV
                     LEAMGQGDLAGCAIRVSAGWNTTEADWARFVEAWTEAHARHAARHSQPATAGA"
     gene            299..1768
                     /gene="sufB"
                     /locus_tag="VHN39_13175"
     CDS             299..1768
                     /gene="sufB"
                     /locus_tag="VHN39_13175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEX2817343.1"
                     /translation="MAAVKQTVEHVESLEKYKHGFVTDIEQDFAPKGLNADIVRFISA
                     KKNEPEWMLTWRLDAFERWLAMDEPDWAKVSFPKIDYQDSYYYAAPKEKVGLASLDEV
                     DPDILETYKKLGIPLREQEVLAGVVGAPRYAVDAVFDSVSVVTTFKKELAQVGVIFCS
                     MSEAIREHPELVQKYLGSVVPVSDNYFACLNAAVFSDGSFVYVPPGVRCPMELSTYFR
                     INAENSGQFERTLIIADAGAYVSYLEGCTAPMRDENQLHAAVVELITLDDAEIKYSTV
                     QNWYPGDPETGKGGIYNFVTKRADCRGDRSKVSWTQVETGSAITWKYPSCILRGDGSS
                     GEFYSIAITNGRQQADTGTKMIHLGKDTRSRIISKGISAGRSSNTYRGLVSAHPKAKG
                     ARNFTQCDSLLIGKHCAAHTVPYIEARNGQSKFEHEATTTRLSEDQLFYVMQRGLSQE
                     EAVQLLVNGFVKEVLQELPMEFAVEAQKLVAISLEGSVG"
     gene            1765..2169
                     /locus_tag="VHN39_13180"
     CDS             1765..2169
                     /locus_tag="VHN39_13180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817344.1"
                     /translation="MSKSKTELVRLSLKDAFEAEQARRAAVRLEKEDAERRQQEQDLA
                     RAEELETALRADAMFLAEHKLVLDRRRYTVSLDHVDFRIAAYFEAGRASVTAADKRST
                     LPGASAPRKREQVDTVADALGVMAQFLADEFR"
     gene            2169..2915
                     /gene="sufC"
                     /locus_tag="VHN39_13185"
     CDS             2169..2915
                     /gene="sufC"
                     /locus_tag="VHN39_13185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEX2817345.1"
                     /translation="MLKVENLHAVVDGKEILKGLSLEVPAGEVHAIMGPNGAGKSTLS
                     YVLTGRDGYEVTQGCATLDDEDLLALAPDVRAARGVFLSFQYPLEIPGVPALTFIRTA
                     LNAQHRARGEDEVSAPAFLKLAREKAAALKIDFDMLKRALNVGFSGGEKKRMEILQMA
                     MLSPRFLILDETDSGLDIDALRIVADGVNALRSPERAMLVITHYQRLLEYIKPDRVHV
                     LAGGRIVASGGPELAHELERGGYERYEQAA"
BASE COUNT          543 a         1047 c          945 g          477 t
ORIGIN      
        1 tctgcccaac acgctctgca tcgccacgcc cggcttcccg tccgacgtcc aggtcatggg
       61 cctcgatctg gcgggggtga tggtcagcgc cggctccgcc tgttcctccg gcaaggtgaa
      121 ggcctcgccg gttctggaag ccatggggca aggcgatctc gccggctgcg caatccgcgt
      181 cagcgccggc tggaacacca ccgaggccga ctgggcccgc tttgtcgaag cctggaccga
      241 ggctcatgcc cgccacgccg cgcgccatag ccagcctgcc acggcggggg cctgagccat
      301 ggccgccgtc aaacagaccg tcgagcacgt cgagagcctg gagaaataca agcatggctt
      361 cgtcaccgac atcgagcagg acttcgcgcc caagggcctg aacgccgaca tcgtccgctt
      421 catctcggcc aagaagaacg agccggaatg gatgctgacc tggcgcctgg acgccttcga
      481 gcgctggctg gccatggacg agccggactg ggccaaggtc tcgttcccga agatcgacta
      541 tcaggacagc tactattacg ccgcgcccaa ggagaaggtg ggtctcgcga gcctcgacga
      601 ggtcgatccg gacatcctgg agacctacaa gaagctcggc atcccgctgc gcgagcagga
      661 agtcctggcc ggcgtcgtcg gcgccccgcg ttacgctgtg gacgcggtgt tcgacagcgt
      721 ctcggtcgtg accaccttca agaaggaact ggcgcaggtc ggggtgatct tctgctcgat
      781 gagcgaggcg atccgcgagc acccggaact ggtccagaag tacttgggct ccgtggttcc
      841 ggtcagcgac aactacttcg cctgcctgaa cgcggcggtc ttctccgacg gcagcttcgt
      901 ctatgtgccg ccgggcgtgc gctgcccgat ggagctctcc acctatttcc ggatcaacgc
      961 cgagaattcc ggccagttcg aacgcaccct gatcatcgct gacgccggcg cctacgtttc
     1021 gtacctggag ggctgcaccg cccccatgcg cgacgaaaac cagctgcacg ccgcggtcgt
     1081 cgaactgatc accctggacg acgccgagat caaatactcc accgtccaga actggtatcc
     1141 gggcgatccg gagaccggca agggcggcat ctacaacttc gtcaccaagc gcgccgactg
     1201 ccgcggcgac cgctccaagg tctcctggac ccaggtggag accgggtctg cgattacctg
     1261 gaagtacccg tcctgcatcc tgcgcggcga cggctcgtca ggtgaattct actccatcgc
     1321 catcactaac ggccgccagc aggccgacac cggcaccaag atgatccacc tggggaagga
     1381 cacccgctcg cggatcatct ccaagggcat cagcgccggc cgctcgtcca acacctaccg
     1441 tggcttggtt tccgcccacc ccaaggccaa gggcgcgcgc aacttcaccc agtgcgacag
     1501 cctcttgatc ggcaagcact gcgccgccca caccgtgccc tacatcgagg cccgcaacgg
     1561 ccagtcgaag ttcgagcacg aagccacgac cacgcggctc tccgaagacc agcttttcta
     1621 cgtcatgcag cgtgggctca gccaggaaga ggccgtccag ctgctggtca acggtttcgt
     1681 caaggaggtg ctgcaggagc tccccatgga gttcgccgtc gaggcccaga agctggtggc
     1741 catttcgctg gaagggagcg tcggatgagc aagtcgaaga ccgaactcgt ccggctctcg
     1801 cttaaggacg cctttgaggc cgaacaggcg cggcgcgcgg ccgtacgcct cgagaaggaa
     1861 gacgccgagc gccggcagca ggaacaggac ctggcccgcg ccgaggagct ggagaccgca
     1921 ctacgcgccg acgccatgtt cctggccgag cacaagctgg ttctcgaccg gcgccgctac
     1981 accgtctcgc tggaccacgt cgacttccgg atcgccgcct acttcgaggc cggccgcgcc
     2041 agcgtcaccg ccgccgacaa gcgttcgacc cttccgggcg cctctgcgcc gcgcaagcgt
     2101 gagcaggtcg acaccgtggc cgacgcgctc ggcgtcatgg cccaattcct cgccgatgag
     2161 ttccgttgat gttgaaagtt gagaacctac acgccgtggt cgacggcaag gagatcctca
     2221 aggggctcag ccttgaggtc cccgccggcg aggtgcacgc catcatgggg ccgaacgggg
     2281 cgggcaagtc gacgctgtcc tacgtgctga ccggccgcga tggctatgag gtcacgcaag
     2341 gctgcgcgac cctcgacgac gaggacctgc tggcgctggc gcctgacgtg cgcgccgccc
     2401 gcggggtttt cctgtcgttc cagtatccgc tggagatccc gggtgtccca gcgctcacct
     2461 tcatccgcac ggcgcttaac gcccagcacc gcgcccgcgg cgaggacgaa gtctcggcac
     2521 cggccttcct caagctcgcc cgcgagaagg cggccgcgct caagatcgac ttcgacatgc
     2581 tgaagcgcgc gctcaacgtc ggcttttccg gcggcgagaa gaagcggatg gaaatccttc
     2641 aaatggctat gctttcgccg cgtttcctga tccttgacga gaccgactcc ggccttgata
     2701 tcgacgcgct ccgcatcgtc gccgacggcg tgaatgcgct gcgcagtccc gagcgcgcca
     2761 tgctggtcat cacccactac cagcggctcc tcgagtacat caaacccgac cgggtccatg
     2821 tcctggccgg cggccggatc gtggcgtcag gcggcccgga actggcccac gagctggagc
     2881 gtggcggcta cgaacgttac gagcaggccg cttgagcatc gccgccgcca tacgcgaccg
     2941 cgatgtcgcc gagctgcccg gcaagcgcga cgaagactgg cgctggacgg acctgcgcgg
     3001 cctgatccgc aa
//
LOCUS       DATAJL010000690         1994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62238,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000690 DATAJL010000000
VERSION     DATAJL010000690.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62238"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VHN39_13190"
     CDS             complement(<1..251)
                     /locus_tag="VHN39_13190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817346.1"
                     /translation="MARAWAERLWLAAAACATLAVLGFYARRLAMPLPMFAADEAAYL
                     IRAIWPDPVVAYDPSVASVNNGVHLSVIRAVYPLGGSFIV"
     gene            complement(254..1192)
                     /locus_tag="VHN39_13195"
     CDS             complement(254..1192)
                     /locus_tag="VHN39_13195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518782.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2817347.1"
                     /translation="MLIGLALVVIAWIAAGAVMVASAGTFTPAGTYVDIGGRKMRLVC
                     AGPPAGDKPTVWMEAGAFGLAADWAAIQEKLTAKGIRSCAYDRAGMGWSDPGPKPRDS
                     TAIVEDLEKLIAASGERGPFILMGHSMAGLHTRLFAGRNPDKVAGLVLIEATTPEQID
                     NPGTTKFLTAFTGISRIAAVSATIGTTLPLYYRAGDRIGLPPQGSAEKRHAYVSGRHA
                     RTAENEVANWPKSAAEARLAPPYDPKWPVAVVVAGGRGLGPEWNAARRVPERASAAGY
                     FEAVDGASHTTILGQTYGDAAVRGVEHVLAHLSPAR"
     gene            1301..1885
                     /gene="pyrE"
                     /locus_tag="VHN39_13200"
     CDS             1301..1885
                     /gene="pyrE"
                     /locus_tag="VHN39_13200"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEX2817348.1"
                     /translation="MNTEQVLEEFRGAGALREGHFILASGRHSPMFLQKNLVFQYPER
                     TARLCKALAEKIVARFGKPDVIVSPAVGAIIPGYETARWMDVPAMYVEREDGAFKLRR
                     AFRIEPGAKVVVIEDVITTGGSFREAIEPIQAAGGVVLCCACIVDRSGGRADVGFPLV
                     ALATLDVPSYAPNEIPPELAALPAEEPGSKRLRA"
     gene            1882..>1994
                     /locus_tag="VHN39_13205"
     CDS             1882..>1994
                     /locus_tag="VHN39_13205"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEX2817349.1"
                     /translation="MTKLRLGVNIDHVATVRNARGEGYPDPVRAAEMALAAG"
BASE COUNT          307 a          749 c          662 g          276 t
ORIGIN      
        1 acgatgaacg acccgcccag cggatagacc gcgcggatca cgctcaggtg caccccattg
       61 ttcaccgacg ccacggaggg gtcgtaggcc accaccgggt ccggccatat ggcgcggatc
      121 agataggcgg cctcatcggc ggcgaacatc ggcagcggca tggcgagccg ccgcgcatag
      181 aacccgagca cggccagtgt cgcgcaggcc gccgccgcca gccacagacg ctcagcccag
      241 gcgcgcgcca cgatcagcgc gccggcgaca ggtgcgccag cacatgctcc accccgcgca
      301 ccgccgcgtc gccataggtc tggcccagga tcgtggtgtg cgaggcgccg tccaccgcct
      361 cgaaataccc ggccgcggag gcccgctccg ggacccgccg cgcggcgttc cactcgggcc
      421 ccagtccgcg tccgccggcc accacaacgg ccaccggcca ctttgggtca tagggcggcg
      481 cgagcctcgc ctccgcggcg ctcttcggcc agttggccac ctcgttctcg gcggtccgcg
      541 catggcggcc ggagacatag gcgtggcgct tctcggccga cccctgcggc ggcaggccga
      601 tccggtcgcc ggccctgtag tagagcggca gggtggtccc gatggtcgcc gacaccgcgg
      661 cgatgcggct gatgccggta aaggccgtca ggaacttggt cgtccccggg ttgtcgatct
      721 gctcgggcgt ggtggcctcg atcagcacca ggcccgcgac cttgtcgggg ttgcgcccgg
      781 cgaacaggcg ggtgtgcagg ccggccatgg aatggcccat caggatgaac ggcccgcgct
      841 cgcccgacgc ggcgatcagc ttctccaggt cctcgacgat ggccgtggaa tcccgcggct
      901 tcggccccgg gtccgaccag cccatgccgg cccggtcata ggcgcaggag cggatgccct
      961 tggcggtcag cttttcctgg atcgccgccc agtcagccgc caggccaaag gccccggcct
     1021 ccatccagac ggtcggcttg tcgcccgccg gaggccctgc acagaccagc cgcatcttcc
     1081 gcccgccgat atccacatag gtcccggccg gcgtgaaggt cccggcgctg gcgaccatca
     1141 ccgcgccggc ggcgatccag gcgatcacaa cgagggcgag accgatcagc attcgacgca
     1201 tgtcctcacc taagggtgct gcgcgcaagg ccgcaacagg cgacagcttt cgcccccgca
     1261 atatctttcg acagcggcca aagggcgtta tctggggtcc atgaacaccg aacaggtcct
     1321 cgaggaattc cgcggcgccg gcgcgctgcg cgaaggccat ttcatcctgg cctcgggccg
     1381 ccacagcccg atgttcctgc agaagaacct ggtcttccag tacccggaac gcacggcgcg
     1441 cctctgcaag gcgctggcgg aaaagatcgt ggcccggttc ggcaagcccg acgtgatcgt
     1501 ctcgccggcc gtcggcgcca tcatccctgg ctacgagacc gcccgctgga tggacgtccc
     1561 ggccatgtac gtggaacgcg aggacggcgc cttcaagctt cggcgcgcct tcaggatcga
     1621 acccggcgcc aaggtcgtgg tcatcgagga cgtcatcacc actggcggct ccttccgcga
     1681 ggccatcgag ccgatccagg ccgccggcgg cgtcgtcctc tgctgcgcct gcatcgtcga
     1741 ccgctccggc ggccgcgccg acgtgggctt ccccctggtg gcgctcgcca ccctggacgt
     1801 gccgtcctac gcccccaacg aaatcccccc cgaactcgcc gccctgccgg ccgaggagcc
     1861 ggggtccaag aggctgcgcg catgaccaag ctccgcctgg gcgtgaacat cgaccacgtg
     1921 gccaccgtac ggaacgcccg gggggagggc tatcccgacc ccgtgcgcgc ggcggaaatg
     1981 gctctggccg ccgg
//
LOCUS       DATAJL010000691         2375 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38358,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000691 DATAJL010000000
VERSION     DATAJL010000691.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2375
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38358"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..757
                     /locus_tag="VHN39_13210"
     CDS             <1..757
                     /locus_tag="VHN39_13210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519114.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HEX2817350.1"
                     /translation="LTSHGGRDFAALGEALAAPGYSFGALEIDAQAFLPQSRPRVFVI
                     AAREPPPVGLVGPSPFHTRAVKAAAEGLPAALAARWIWWRASAPPPRNTDLAALLEPD
                     GAVAWHPPERTARWLDLMAPLHRARLQALRDRRQRAVGAVYRPMRLEAGLKVQRAEVR
                     FDGLAGCLRTPRGGSSRQVIVVVEDGKVRTRLLTSREAARLMGLPESYRLPAAATSAL
                     HVAGDGVAVPVVRWLAQELLEPLLDRSAVMAAE"
     gene            854..1843
                     /gene="cysK"
                     /locus_tag="VHN39_13215"
     CDS             854..1843
                     /gene="cysK"
                     /locus_tag="VHN39_13215"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004124 - cysteine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEX2817351.1"
                     /translation="MDSTPDKIYDAARYQRAGRGKIFDSILDTIGDTPLVRLPRLTAA
                     LKPQGEVVAKLEFFNPIGSVKDRIGVAMVEYLEAQGVLKPGGMIVEPTSGNTGIALAF
                     VAAAKGYRLTLVMPESMSMERRKMLLILGAKLELTPAERGMAGAVARAREIVEATPGA
                     VMPQQFDNVANPLIHRVSTAEEIWNDTDGRVDAVVSGVGTGGTISGVGQVLKARKPSV
                     RMIAVEPESSAILSGGPPGPHKIQGIGAGFVPSILDRGVIDEVVQVSNDDSFAMARRV
                     AAEEGIPVGISSGAALTAAFHVAARDDMKGKLIITIIPSFAERYVSTALFEGL"
     gene            1840..2268
                     /gene="vsr"
                     /locus_tag="VHN39_13220"
     CDS             1840..2268
                     /gene="vsr"
                     /locus_tag="VHN39_13220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004520 - DNA endonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch endonuclease Vsr"
                     /protein_id="HEX2817352.1"
                     /translation="MTDVFSHEKRSAVMRRVKGKDTTPELAVRKALTRLGARYRLHRK
                     DLPGKPDIVLPGRRLALFVHGCFWHGHDCARGARVPKQNRDYWVGKVGRNRARDVASR
                     EALTALGWRVETVWECDLKDAAALTSRLKRLLVAQPPSGS"
BASE COUNT          332 a          870 c          819 g          354 t
ORIGIN      
        1 gctcacctcg catggcgggc gggatttcgc ggcgctgggc gaggccctgg cggcgccggg
       61 ctacagcttc ggcgcgcttg agatcgacgc gcaggccttc ctgccgcagt cgcggccacg
      121 ggtcttcgtc atcgccgcgc gcgagccgcc gcccgtgggc ctggtggggc caagcccctt
      181 ccatacccgc gctgtgaaag ccgccgccga gggtctgcct gcggcgctcg ccgcccgttg
      241 gatctggtgg cgcgcctcag ccccgccgcc ccgcaatacc gacctcgccg ccctgctgga
      301 gccggacggc gcggtggctt ggcatccgcc ggagcggacg gcgcgctggc tcgacctgat
      361 ggccccactg catcgggcgc ggcttcaggc gctcagggat cgccgtcagc gcgctgtggg
      421 cgcggtctac cgcccgatgc ggctggaagc cggtctgaag gtgcagcgcg ccgaggtgcg
      481 gttcgatggc ctggccggtt gcctgcgcac cccgcgcggc ggctcctcgc gccaggtgat
      541 cgtcgtggtc gaggatggaa aggtcaggac ccggctgctg accagccgcg aagccgcccg
      601 cctgatgggc ctgccggaga gctaccgcct gccggccgcc gcgacctcgg ctctgcatgt
      661 ggccggcgac ggggtcgccg tgccggtggt gcgctggttg gcgcaggagc tgctggagcc
      721 cctgttggac cgctcggccg tgatggccgc cgagtagccg ccgccccttc caatccgccc
      781 cccttccaat ccgaccggga acccttaggt tcgccctcaa tagggcagca tcttcccgcg
      841 aaaggtccga ttcatggact ctacccccga caagatctac gacgccgccc gctatcagcg
      901 cgccggccgg ggcaagatct tcgactccat cctcgacacc atcggcgaca cgcccctggt
      961 gcgcctgcca cgcctgacgg cggcgctgaa gccccagggc gaggtggtcg ccaagctgga
     1021 attcttcaac ccgatcggct cggtgaagga ccgcatcggc gtggccatgg tcgaatacct
     1081 cgaagcccag ggcgtgctga agcccggcgg catgatcgtc gagccgacca gcggcaacac
     1141 cggcatcgct ctggccttcg tggccgccgc caagggctat aggctgaccc tggtcatgcc
     1201 cgagtccatg tccatggagc ggcgcaagat gctcttgatc ctgggcgcca agctggagct
     1261 gacccccgcc gaacgcggca tggccggcgc cgtggcccgg gcccgggaga tcgtcgaggc
     1321 gacgcccggc gcggtgatgc ctcagcagtt cgacaatgtc gccaatcccc tgatccaccg
     1381 ggtctccacc gccgaggaga tctggaacga caccgacggc cgcgttgacg ccgtcgtctc
     1441 aggcgtcggt acgggcggca ccatcagtgg cgtcggccag gtgctgaagg ccaggaagcc
     1501 ctccgtccgg atgatcgccg tcgagccgga gagctcggcc atcctctccg gcggcccgcc
     1561 cggcccgcac aagatccagg gcatcggcgc gggcttcgtt ccttcgatcc tcgaccgcgg
     1621 cgtgatcgac gaggtggtgc aggtctccaa cgacgacagc ttcgccatgg ccaggcgcgt
     1681 ggccgccgag gaaggcatcc cggtgggcat ctcgtccggt gcggcgctca cggccgcctt
     1741 ccatgtcgcc gcccgcgacg acatgaaggg caagctgatc atcaccatca tccccagctt
     1801 cgccgaacgc tacgtctcca cagccctctt cgaagggctg tgacggacgt cttctcgcat
     1861 gagaaacgct cggcggtgat gcgccgggtg aagggcaagg acaccacgcc ggaactcgcg
     1921 gtgcgcaagg ccctgacccg cctcggcgcc cgctaccgcc tgcaccgcaa ggacttgccg
     1981 ggaaagccgg acatcgtcct gccgggccgc cggctggcgc tcttcgtcca cggctgtttc
     2041 tggcacggcc acgactgcgc gcgcggcgcg agggtgccca agcagaaccg cgactactgg
     2101 gtcggcaagg tgggccgcaa ccgtgcccgt gacgtggcga gccgcgaagc cctgaccgca
     2161 ctgggctggc gggtcgagac ggtctgggaa tgcgacctga aggacgcggc ggctttgaca
     2221 tcccgtctca aacgccttct cgtcgcgcag ccgccgtccg ggagctgaag atgcgccgat
     2281 ccgcagtgct gcccgccgcc gtcgccgccc tgggtttgct tgcagccgcc gccggcgcgc
     2341 cgggccgcgc ggtggccgcg ccgcccccgc tggcg
//
LOCUS       DATAJL010000692         3710 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62267,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000692 DATAJL010000000
VERSION     DATAJL010000692.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3710)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3710)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3710
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62267"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1461
                     /locus_tag="VHN39_13225"
     CDS             <1..1461
                     /locus_tag="VHN39_13225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2817353.1"
                     /translation="PKGLFPIQDTGQLQARLQAPQTVSYPRMVQLQQQVADAILTDPA
                     VDNLSSFVGVDGATNATLNSGQLLINLKPSHGAQAKVMQRLRDLAANVAGVQLYLQPT
                     QDLTVDAESGPTQYRLAVEGANTQLVTDWAVKLTAAMAQDKKLQNVTTDAADQGLSAF
                     VNVDRDTAARLSITPAAVDDALYSAFGQRIISTIFTETNQYRVILESRPSDSTPTGLS
                     EVQLQSTGGSTPLSAVATIKEQTAPLAVRHVAQFPAATIGFDTGPGVSLGGAVSDIRK
                     VASKAGMPAGLTMTFLGASGAYERSLNNELWLILAAVVCVYIVLGVLYESYIHPLTIL
                     STLPSAGVGALLALIFTGNDLGVIGIIGIILLIGIVKKNAIMMIDFALDAEREQGMSA
                     RDAIHQAALLRFRPILMTTMAALFAAVPLMLGFGMGAELRRPLGIAIFGGLIVSQLLT
                     VFTTPVVYLWFDKLAPTKRRTGAAVGEPLASPEPAE"
     gene            1458..>3710
                     /locus_tag="VHN39_13230"
     CDS             1458..>3710
                     /locus_tag="VHN39_13230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2817354.1"
                     /translation="MNLSGPFIRRPIATILLTIGLALAGVAGFFVLPVAPLPMVDFPA
                     VSVSANLPGASPETMASSVATPLERRLGTIAGVNEITSQSSTGSTRISMQFDISKNVD
                     SAARQVQAGINAARADLPATLRSNPTYRKANPAAAPVVILALTSDSKTPGQIYDAVNN
                     IVQQRLSQVSGVGDVEIGGGSQPAVRVEISPFALNRFGVSLEDVRAAIQSANANRPKG
                     TVQDHGGQRFQIYTSTGGTKAADYQGLIIAYRNNAPIRLSDVAEVIDGVQDARTIGLF
                     NGKPAIVVLITQQPNANVIATVDKVRATLPLLQAQLPSDVKLQVASDSTTSIRASLRE
                     IEITLAIAIALVVLVVSLFLRSISATLIPAVATVVSLLGTFGAMYMLGFSLNNISLMA
                     LTVASGFVVDDAIVVLENTNRHIEAGMDRFEAALAGARQVGFTVVSMSISLVAAFIPL
                     LFMGGQVGRLFREFSMTLSAAVLISLLVSLTTTPMMCAYLLPTREDRARQGRVARVLE
                     RAVNGLHKGYERSLDFALSARPLMMLILAAVIGLNVFLYMAIPKGFFPIQDSGRLNGG
                     LRADQSISSEAMGLKMKQLVAIILKDPAVATVVGFTGGGRSGGGFLSVDLKPRGQRTD
                     GGQAVITRLRPQLQKVTGITVFLNPQQDMRAGGRQSNATYQYTLKADNAADLKVWAQK
                     LNDSMSEKTVMTDVNTDQQDNGVEAYVDVDHDTASRLGVNLRDVDNALYDSFGQRQVA
                     NIYEDLNQYTV"
BASE COUNT          610 a         1325 c         1177 g          598 t
ORIGIN      
        1 cccaagggcc tgttccccat ccaggacacc ggccagttgc aggcccgcct gcaggcgccg
       61 cagaccgtct cctatccgag gatggtgcaa ctgcagcaac aggtggccga cgccatcctg
      121 accgatccgg cggtggacaa cctgtcctcc ttcgtgggcg tcgacggcgc caccaacgcc
      181 accctgaaca gcggccagct gctgatcaac ctgaagccca gccacggcgc ccaggccaag
      241 gtgatgcagc gactacgcga cctggcggcc aatgtggccg gcgtccagct ctacctgcag
      301 ccgacccagg acctgaccgt cgacgccgag tccggcccga cccagtaccg cctggccgtc
      361 gagggcgcca acacccagct ggtcaccgat tgggcggtga agctgacggc cgccatggcg
      421 caggacaaga agcttcaaaa cgtcaccacc gacgccgccg accagggcct ctcggccttc
      481 gtcaatgtcg accgcgacac cgccgcgcgc ctgtcgatca cgcctgcggc ggtggatgac
      541 gcgctctatt cggcgttcgg ccaacggatc atctcgacga tcttcaccga gaccaaccag
      601 tatcgggtga tcctggaatc gcggcccagc gactccacgc caaccggcct ctccgaagtc
      661 cagctgcagt cgaccggggg ctcgacgccg ctgtcggccg tggccacgat caaggagcag
      721 acggccccgc tggcggtgcg ccacgtggct cagttcccgg ccgccaccat cggcttcgac
      781 accggccccg gcgtctcgct cggcggggcg gtgagcgaca tccgcaaggt cgccagcaag
      841 gccggcatgc ccgccggcct gaccatgacc ttcctgggcg cgtccggcgc ctatgagcgg
      901 agcctgaaca acgagctgtg gctgatcctg gccgcggtgg tctgcgtcta catcgtgctg
      961 ggcgtgcttt acgagagcta catccacccc ctgaccatcc tgtcgaccct gccctcggcc
     1021 ggggttggcg cgctgctcgc cctgatcttc accggcaacg atctgggggt gatcggaatt
     1081 atcggcatca tccttctgat cggcatcgtg aagaagaacg cgatcatgat gatcgacttc
     1141 gcgctggacg cggagcgcga gcagggcatg agcgcccgcg acgcgatcca tcaggcggcg
     1201 ctgttgcggt tccgcccgat cctgatgacc accatggccg cgctgttcgc cgcggtgccg
     1261 ctgatgctgg ggttcggcat gggggctgag ctgcgccggc cgctgggcat cgcgatcttc
     1321 ggcggcctga tcgtcagtca gctgctgacc gtcttcacga ccccggtggt ctatctctgg
     1381 ttcgacaagc tggcgcccac caagcgcagg accggggcgg ccgtgggcga gccgctggcg
     1441 tcgccggagc cggccgagtg aacctctccg gccccttcat acgccggcca atcgccacca
     1501 tcctcctgac catcgggctg gccctggccg gggtggcggg cttcttcgtc ttgccggtgg
     1561 cgcccctgcc gatggtcgat ttcccggccg tctcggtgtc ggccaacctg ccgggcgcga
     1621 gccctgagac catggcctcc agcgtggcga cgcccctgga acgcaggctc ggcaccatcg
     1681 ccggcgtcaa tgagatcacc tcgcagagct ccaccggctc gacgcggatc agcatgcagt
     1741 tcgacatctc caagaatgtc gactcggccg cgcgccaggt gcaggccggg atcaacgccg
     1801 cgcgcgccga cctgccggcg acgctgcgca gcaacccgac ctaccgcaag gccaatccgg
     1861 cggcggcccc ggtggtgatc ctggctctga cgtccgacag caagacgccc ggccagatct
     1921 acgacgcggt caacaacatc gtgcagcagc gcctctccca ggtgagcggg gtcggcgatg
     1981 tggagatcgg cggcggctcg cagcccgccg tgcgcgttga gatttcaccc ttcgcgctca
     2041 accgcttcgg ggtcagcctg gaagacgtcc gcgccgccat ccagtcggcc aacgccaacc
     2101 ggcccaaggg cacggtccag gaccatggcg gccagcgctt ccagatctat acctcgaccg
     2161 gcggcaccaa ggcggccgac taccagggcc tgatcatcgc ctaccgcaac aatgccccga
     2221 tccggctctc cgacgtggcc gaggtgatcg acggcgtgca ggacgcgcgc accatcggcc
     2281 tgttcaacgg caagccggcc atcgtggtgc tgatcaccca gcaacccaac gccaacgtca
     2341 tcgccaccgt cgacaaggtc cgcgccaccc tgcccttgct tcaggcccag ctgccgagcg
     2401 acgtgaagct gcaggtggcg tcggactcca ccacctcgat ccgcgcctcc ctgcgggaga
     2461 tcgagatcac gctcgccatc gccatcgcgc tggtggtgct ggtggtgtcg ctgttcctgc
     2521 gcagcatcag cgcgacgctg atcccggcag tggcgacggt cgtctcgctc ctggggacct
     2581 tcggggcgat gtacatgctg gggttcagcc tgaacaacat ctccctgatg gcgctgaccg
     2641 tggcctccgg cttcgtggtt gatgacgcca tcgtcgtgct ggagaacacc aaccgtcaca
     2701 tcgaggccgg catggaccgc tttgaggccg cactggccgg cgcgcgccag gtgggcttca
     2761 ccgtggtctc gatgagcatc tccctggtgg cggccttcat cccgctgctg ttcatgggcg
     2821 gccaggtggg gcggctcttc cgcgagttct ccatgacgct gtcagccgcc gtgctgatct
     2881 cgcttttggt ctcgctcacc accaccccga tgatgtgcgc ctatctgctg ccgacccggg
     2941 aagaccgtgc ccggcagggc cgcgtggccc gcgtcctcga gcgcgcggtc aacggcttgc
     3001 acaagggcta cgagcggagc ctggacttcg ccttgtccgc ccggccgctg atgatgctga
     3061 tcctggccgc ggtgatcgga ctcaacgtct ttctctacat ggccatcccc aagggtttct
     3121 tccccatcca ggactccggg cgcctgaacg gcggcctgcg cgccgaccag tcgatctcgt
     3181 cggaggccat gggcctgaag atgaagcagc tggtggcgat catcctgaag gacccggccg
     3241 tggccacggt ggtgggcttc accggcggcg ggcgctccgg cggcgggttc ctgtcagtgg
     3301 acctgaagcc acgcggccaa cgcaccgatg gcggccaggc ggtgatcacg cggctgcggc
     3361 cgcaactcca gaaagtgacc ggcatcaccg tcttcctgaa cccgcagcag gacatgcgcg
     3421 ccggcgggcg gcagtccaac gccacctatc aatatacgct caaggccgac aacgccgccg
     3481 acctgaaggt ctgggcgcag aagctcaatg actccatgtc cgagaaaacg gtgatgaccg
     3541 acgtcaacac cgaccagcag gacaacggcg tggaggccta tgttgacgtg gatcacgata
     3601 ccgcctcgcg cctgggcgta aacctgcgcg atgtggacaa cgcgctttac gacagcttcg
     3661 gccaacggca ggtggccaac atctacgagg acctgaacca gtacaccgtg
//
LOCUS       DATAJL010000693         2881 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38378,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000693 DATAJL010000000
VERSION     DATAJL010000693.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38378"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..1061
                     /gene="map"
                     /locus_tag="VHN39_13235"
     CDS             222..1061
                     /gene="map"
                     /locus_tag="VHN39_13235"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEX2817355.1"
                     /translation="MSNTDLSAVAGLDADFRTGQIKIHSEADFEGMRVAGKLAAECLD
                     MLTPHVVPGVVTDHLDSLAREFILDHGALPACLGYRGYTKTVCISANHVVCHGIPGER
                     VLREGDIANIDVTVIVDGWHGDTSRMYGVGPVAPRAKRLIDVTYEALERGLAAVKPGA
                     RTGDIGHAIQTYVESMRCSVVRDFCGHGLGKVFHDAPNILHFGQRGTGELLRPGMFFT
                     IEPMVNLGKYQVKLLSDGWTAVTRDKSLSAQCEHSIGVTETGYEVFTLSPTGQYKPPV
                     ISG"
     gene            1136..1702
                     /locus_tag="VHN39_13240"
     CDS             1136..1702
                     /locus_tag="VHN39_13240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817356.1"
                     /translation="MTSISALVISVSSIFIAVHNGHDADKALQAQTYPYIDQDRSDAT
                     PAGVKRLSIGFVNNGIGPAHEESFRIKVGGRYVTSLEDLIASAVGPADIKAVRAALLP
                     LVNNVPTRFIPANSTQYVFQMTYTDANARWWDLMDKASESWRLEVCYCSVFGECWTRL
                     DSTAPKPVAVCKRDEAAEFNNDRPAPLP"
     gene            1751..>2881
                     /locus_tag="VHN39_13245"
     CDS             1751..>2881
                     /locus_tag="VHN39_13245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817357.1"
                     /translation="MKAAAAAIAALALAVPTVVGADATTLGVGYICGAEHRGPVVTAA
                     NAVMLAGVGNGSSPADTANAQAQAWYVEGLNLYHAFNHNEARAAFAKAAELDPHCALC
                     EWGVALGLGPTLNYGVTEDETALALSHAQRAKALLKPGDARAAGLIDALIVRYAKDKP
                     LVRDLDFGKAMDELSRRYPADDEIANLAAQALMIPGRGGNPTAVARALELIKGVLSRH
                     PDDTAAIHYYIHASEFEGRPADALPYAEKLAGLAPGASHLVHMAAHTLMHVGQYEQVA
                     IVDAQALKVDADTEKRLGYEGPLSSQMYYLHNYTFGLAGALMAGDAKLALKYADHADV
                     AFPASADSAKVMLPAGLTRVQRPQDARTTVDARSLVAYGRYAP"
BASE COUNT          473 a         1089 c          903 g          416 t
ORIGIN      
        1 cccgagccgg cgacctgggc gctgatgatc ggcgggttcg gcatggcggg cgcagtcttg
       61 cgccggcgtc ggtcgcgcgt cgcggcgtaa ccgcgcgttg gaaacggttg agggcggagg
      121 gtcgaccctg ggcgcaggcg agggttgaaa cttcgtgcta tcgttgcgac ttaggatcca
      181 ccctgacccg acgacccggc gcgcgccggg ggatgagcca catgtccaac accgacctct
      241 ccgccgtcgc cggcctcgac gccgacttcc gcaccggcca gatcaagatc cactccgaag
      301 cggactttga gggcatgcgc gtcgccggca agctcgccgc cgagtgcctg gacatgctga
      361 cgccgcacgt cgtgccgggc gtcgtcaccg accacctgga ttcgctggcc cgcgaattca
      421 tcctcgacca tggcgcgctg ccggcctgcc tgggctaccg cggctacacc aagaccgtct
      481 gcatcagcgc caaccacgtg gtctgccacg gcatcccggg cgagcgggtc ctgcgcgaag
      541 gcgacatcgc caacatcgac gtcaccgtca tcgtcgacgg ctggcacggc gacaccagcc
      601 gcatgtatgg cgtgggtcca gtagcgccgc gcgccaagcg cctgatcgac gtcacctacg
      661 aagccctgga gcgtggcctg gccgccgtga agcccggcgc gcgcaccggc gacatcggcc
      721 acgccatcca gacctatgtg gaatccatgc gctgctcggt ggtgcgcgac ttctgcggcc
      781 atggcctggg caaggtgttc cacgacgcgc ccaacatcct gcacttcggc cagcgcggca
      841 cgggcgagct cctgcggccg ggcatgttct tcaccatcga gcccatggtg aacctcggca
      901 aataccaggt gaagctgctg tccgacggct ggaccgcggt cacccgcgac aagtcgctct
      961 ccgcccagtg cgagcactcc atcggcgtca ccgagaccgg ctacgaggtc ttcaccctgt
     1021 cgcccaccgg ccagtacaag ccgccggtga tcagcggcta ggcgtgagct tcgacccgcc
     1081 ggacatcgac cctccccatc gccgcagcgg tcgcttgccc gcttggctgg agtgggtgac
     1141 ctcgatctcg gccctggtga tctcggtcag ctcgatcttc atcgccgtcc acaacggcca
     1201 cgacgcggac aaggccttgc aggcccagac ctacccctac atcgaccagg accgcagtga
     1261 cgcgacgccc gccggcgtga agcggctttc gatcggcttc gtgaacaatg ggatcgggcc
     1321 ggcccacgag gagagcttcc ggatcaaggt cggcggccgc tacgtgacct cgctggaaga
     1381 cctgatcgcc tcggctgtcg gacccgccga catcaaggcg gtgcgcgccg ccctgcttcc
     1441 gctggtcaac aatgtcccga cgcggttcat cccggccaac agcacgcagt acgtcttcca
     1501 gatgacctac accgacgcca acgcccgctg gtgggacctg atggacaagg ccagcgagtc
     1561 ctggcggctg gaggtctgct actgctcggt cttcggcgag tgctggaccc gcctcgattc
     1621 cacggcgccc aagcccgttg cggtctgcaa acgcgacgag gccgccgagt tcaacaacga
     1681 ccgaccggcg cccttgccct gacaccgcaa acgcccgacc cttgcgccag ccaaccgggg
     1741 agacatcgac atgaaggccg cagccgcagc catcgccgcc ctggcgctcg ccgtccccac
     1801 agtggtgggc gccgacgcga ccacgctcgg cgtcggctat atttgcggcg ccgagcatcg
     1861 cgggccggtg gtcacggcgg ccaacgccgt tatgctggcc ggagtcggca acggctcatc
     1921 ccccgccgac accgccaacg cccaggccca ggcctggtac gtcgagggcc tcaacctcta
     1981 ccacgccttc aaccataacg aggcccgcgc cgccttcgcc aaggccgccg agctcgatcc
     2041 tcactgcgcg ctctgcgaat ggggcgtggc gctgggcctg ggcccgacgc tgaactacgg
     2101 cgtcaccgaa gacgagaccg cgctggcgct cagccacgcg caacgcgcca aggcccttct
     2161 gaagcccggc gatgctcgcg ccgcgggcct gatcgacgcg ctgatcgttc gctacgccaa
     2221 ggacaagccg ctggtccgcg acctcgactt cggcaaggcc atggacgagc tttcccgccg
     2281 ctatccggcc gacgacgaga tcgccaacct ggcggcccag gcgcttatga tcccgggccg
     2341 cggcggcaat cccacggcgg tcgcccgcgc cctggagctg atcaaggggg tgctgtctcg
     2401 ccatcccgac gacaccgccg ccatccacta ctacatccac gccagcgagt tcgaaggccg
     2461 cccggctgac gcgctcccct atgccgaaaa gctcgcgggc ctggcccccg gcgccagcca
     2521 cctggtgcac atggccgccc acaccctgat gcacgtgggc cagtacgagc aggtggcgat
     2581 cgtcgacgcc caggccctga aggtcgacgc cgataccgaa aagcgtctgg gctacgaggg
     2641 cccgctctcc agccagatgt actacctgca caattacacc ttcggcctgg ccggcgccct
     2701 gatggccggc gacgccaagc tcgccctgaa gtacgccgac cacgccgacg tcgccttccc
     2761 ggccagcgcc gacagcgcca aggtcatgct gcccgccggc ctcacgcggg tgcagcgccc
     2821 tcaggacgcc cgcaccaccg tcgacgcccg cagcctcgtg gcctacggcc gctatgcgcc
     2881 g
//
LOCUS       DATAJL010000694         6232 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25107,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000694 DATAJL010000000
VERSION     DATAJL010000694.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6232
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25107"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1314
                     /locus_tag="VHN39_13250"
     CDS             <1..1314
                     /locus_tag="VHN39_13250"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX2817358.1"
                     /translation="RTYDSNLYLAPAGAAPAEPVRLTAYEGEDNDPQGGSPLAWSPDG
                     RQIAYLQGGPVKLIGYGVRHLAVVPAAGGPARVLTAGLDRNVSDPVWSRDGRAIRFLV
                     EDDEAQRIDQVPAAGGAVTEVAGGWRKFSSLKAGPNGALAALLSTPTAPAEIYALDAA
                     GQPRQLTRQNDAWLKEVDVAPTVRTSFKSHDGTEVHGFLVTPPGASAGTRLPTMLYSH
                     GGPQSQNAAEFSLQWQIFAGHGLAVVAPNFRGGTGRGEAYAKAIYADWGSVDVQDDLA
                     AIDDAVAKGIADPNRLVLGGWSYGGILTNYVIASDRRFKAAVSGASISNVFAGYGTDQ
                     YIRDYETELGRPWENPKGWMKISYPFFHNEKITTPTLFMAGDKDFNVPLLNSEQMYQA
                     LRSRNVDTGLIIYPGEFHGLKRPSFLKDRMQRWLAWYDTHLGKQP"
     gene            1311..2084
                     /locus_tag="VHN39_13255"
     CDS             1311..2084
                     /locus_tag="VHN39_13255"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2817359.1"
                     /translation="MNLGLDGKVIFIAGASRGIGLGIVEACLAEGAKLAITARGAEAL
                     EAERARLAAQYGEDRLLAISGDMRDTKVIEDAIARTEAELGPIFGAVANVGLYPCPPG
                     LEVDDDTWDKGFTQNLDSAWRLSRAVLRRMIPRGEGSMLLISSIAGLGALGTGLTYGT
                     AKAGMNHLAKELAKMSGPSNVRVNVIAPGNIIFPGGTWEINSTGPRGDAWMRWLKREV
                     PMNRFGKPEEIGSVAAFLMSPLASFVTGAVIPVDGGQTR"
     gene            2138..3001
                     /locus_tag="VHN39_13260"
     CDS             2138..3001
                     /locus_tag="VHN39_13260"
                     /inference="COORDINATES: protein motif:HMM:NF007695.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HEX2817360.1"
                     /translation="MTATTFKLGDRTVGRMGYGAMQLAGPGVFGPPKDHAAALAVLRE
                     AIARGVNHIDTSDFYGPHVTNQIIREALHPYPKDLVIVTKVGGRRGEDASWNPAQSPP
                     ELISAVHDNLRNLGLEALDVVNLRLMGGHAPTEGTIEPQFSTLVELQKQGLIRHLGLS
                     NATATQVEQALGIAPIVCVQNHYNLAHRDDDALVELLVAKGIAYVPYFPLGGFFPLQV
                     QALSDIAQRLGHTPLQIALAWLLHRAPNILLIPGTSSLGHLHENLAAREIALSDEVVA
                     ELDTIGAVPAH"
     gene            complement(2998..4401)
                     /locus_tag="VHN39_13265"
     CDS             complement(2998..4401)
                     /locus_tag="VHN39_13265"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing
                     glycosyltransferase family protein"
                     /protein_id="HEX2817361.1"
                     /translation="MATGPSIDPGLAALDTTTLLEAARQLREQGHLAMVVNLLTEIIR
                     RDGGNAEAWHEFGLAANQAGQPERALDYLVRAIAIRPEASEMHLAQGNALLALERHEA
                     ARAAFEVALALDPRSVAAHFNRGNVLRSLGQIDEAIASYDAAISLAPDMAIAHHNRAF
                     CLLQKGELGAGFEEYEWRRRCPTFDDPRYGLDRSWTGDPPLAGQALFIWPELFQGDLI
                     QFCRYAVLAERGGARVRLAAPRALHRLLSSLSPTIALRPEHATPSDVEYQTPLMSLPL
                     AFGATLESLPQAEGYLRAEPERIARWRTRLGTEGFKIGVVWQGSTQPYALPLQRSYPL
                     AVLRGVAGLEGVRLISLQKVNGLDQLDTLPDGMVVESLGDDFDPGPDAFVDTAAAIAC
                     CDLVITMDTSVAHLAGALGARTWVALPLVADWRWFIDRTDSPWYPRTRLFRQGERGVW
                     DGVFEEMAAVLRGELGL"
     gene            4515..>6232
                     /gene="purL"
                     /locus_tag="VHN39_13270"
     CDS             4515..>6232
                     /gene="purL"
                     /locus_tag="VHN39_13270"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEX2817362.1"
                     /translation="MSVAPAKTTAETAAEYGLSAAEYAVIVQRLNREPRPVELGVFSV
                     MWSEHCSYKSSKIHLGKFPTTGPRVICGPGENAGVIDIGDGPDGVKLACIFKMESHNH
                     PSYIEPYQGAATGVGGIMRDVFTMGARPIALLNALRFGDPSHPKTKRLVAGVVSGIGG
                     YGNCVGVPTVAGETNFHRGYDGNILVNAMCVGLADADKIFYSAAPAAGLPVVYFGSKT
                     GRDGIHGATMASQEFDGASDEKRPTVQVGDPFAEKLLIEATLELMASGAVAAIQDMGA
                     AGLTSSSVEMAGKGGVGVELNLDMVPQREEGMSAYEMMLSESQERMLAILKPGREADG
                     ERIFAKWGLDAATIGWTTDTGHLVLKHKGETVCDVPLAPLFDDAPLYDRPWVAPALQP
                     RLNPADVPAPADYAGAILTLMSAPDMASKRWLWEQYDRHVMADTLEDSATGADAGIVR
                     VHGTKKALAMTSDVTPRYVQNDPYEGGKQAVAEAWRNLTAVGADPIAITDNLNFGNPE
                     RPEIMGQIVLAIEGMAEACRALDFPVVSGNVSLYNETNGSAIPPTPTVGAVGLIADYA
                     RRADFSS"
BASE COUNT         1040 a         2341 c         1977 g          874 t
ORIGIN      
        1 cggacctacg acagcaacct ctacctggcg cccgccggcg ccgcgccggc tgaaccggtc
       61 cgcctcaccg cctacgaggg tgaggacaac gatccgcagg gcggcagccc gctcgcctgg
      121 agcccggacg gccgccagat cgcttatctg cagggcgggc ccgtcaagct gatcggctac
      181 ggcgtgcgcc acctggccgt cgtccccgcg gccggcggtc cggcgcgggt cctcaccgcc
      241 ggcctcgacc gcaatgtttc cgacccggtc tggtcccgcg acgggcgcgc gatccgcttc
      301 ctcgtggagg acgacgaagc ccagcgcatc gaccaggttc ccgccgccgg cggggcggtt
      361 accgaggtcg caggcggctg gcgcaagttc tcatccctga aggccgggcc caatggcgcc
      421 ctggcggccc tgctctcgac accgacggcg cccgccgaga tctacgccct ggacgccgcg
      481 ggtcagcccc gccagctcac ccgccagaac gacgcctggc tgaaggaggt cgacgtcgcg
      541 cccaccgtcc gcaccagctt caagagccat gacgggaccg aggtccacgg cttcctggtc
      601 accccgcccg gcgcgtcggc cggcacgcgc ctgccgacca tgctctacag ccacggcggg
      661 ccgcagtcgc agaacgccgc ggagttctcg ctccagtggc agatcttcgc cggccatggc
      721 ctggccgtcg ttgctcccaa cttccggggc ggcacgggcc gaggcgaggc ctacgccaag
      781 gcgatctacg ccgactgggg ctcggtggat gtccaggacg acctggccgc catcgacgac
      841 gccgtcgcca aggggatcgc cgacccgaac cgcctggtgc tcggcggctg gagctatggc
      901 ggcatcctga ccaactacgt catcgccagc gaccggcgct tcaaggccgc ggtctcaggc
      961 gcctcgatct ccaacgtctt cgcgggctac ggcaccgacc agtacatccg cgactacgag
     1021 accgagctcg gccgcccctg ggagaacccc aagggctgga tgaagatcag ctaccccttc
     1081 ttccacaacg agaagatcac cacgcccacc ctgttcatgg ccggcgacaa ggacttcaac
     1141 gtccccctgc tcaactcgga acagatgtac caagcgctcc gcagccgaaa cgtcgacacc
     1201 ggcctgatca tctaccccgg cgaattccac ggcctgaagc gcccgagctt cctcaaggac
     1261 cgcatgcagc gctggctcgc ctggtacgac acacacttgg ggaaacagcc atgaacctgg
     1321 gactggacgg caaggtcatc ttcatcgccg gggccagccg cggcatcggg ctgggcatcg
     1381 tcgaggcctg cctggccgag ggcgcgaaac tggccatcac cgcgcgcggc gccgaggcgc
     1441 tggaggccga acgcgcccgc ctggccgccc aatatggcga ggatcgcctc ctcgccatct
     1501 ccggcgacat gcgcgacacg aaggtgatcg aggacgccat cgcgcgcacg gaggccgagc
     1561 tcggcccgat cttcggcgcc gtggccaatg tcggcctcta tccctgcccg cccggcctcg
     1621 aggtggacga cgacacctgg gacaagggct tcacccagaa cctggactcg gcctggcgcc
     1681 tctcccgcgc ggtgctgcgc cgcatgattc cgcgcggcga gggatccatg ctgctgatca
     1741 gctcgatcgc gggcctgggc gcgctcggca caggcctcac ctacggcacg gccaaggccg
     1801 ggatgaacca cctcgccaag gaactggcca agatgagcgg ccccagcaat gtgcgggtca
     1861 atgtcatcgc gcccggcaac atcatcttcc ccggcgggac ctgggagatc aattccaccg
     1921 gccctcgcgg cgacgcatgg atgcgctggc tcaagcgcga ggtccccatg aaccgcttcg
     1981 gcaagcccga ggagatcggc tcagtcgccg ccttcctgat gagcccgctc gcgagcttcg
     2041 tcaccggcgc ggtcattccg gtggatgggg gccagacgcg gtagccggcg gggccgcccg
     2101 tccccatatg ccagcggcct cagccccgga gatccccatg accgccacaa ccttcaagct
     2161 cggcgaccgc accgttggcc ggatgggcta cggcgccatg cagctcgccg gccccggtgt
     2221 cttcggtccg ccgaaggatc acgccgcggc gctggccgtc ctgcgcgaag ccatcgcccg
     2281 gggcgtgaac cacatcgaca ccagcgactt ctacggcccg cacgtcacta accagatcat
     2341 ccgcgaggcc ctgcacccct atccgaagga cctggtaatc gtcaccaagg tcggcgggcg
     2401 acgtggcgag gacgcctcct ggaaccccgc ccagtcgccg cctgagctga tctccgccgt
     2461 ccacgacaac ctcaggaacc tcggcctgga ggcgctcgac gtggtcaatc tgcgcctcat
     2521 gggcggccac gcgcccaccg aggggaccat cgagccgcaa ttcagcaccc tggtcgagct
     2581 tcagaagcag ggcctgatcc gccatctggg cctcagcaac gcgaccgcca cccaggtcga
     2641 gcaggcgctc ggcatcgccc ccatcgtctg cgtccagaac cactacaacc tcgcccaccg
     2701 cgacgacgac gccctcgtcg agctgctcgt cgccaagggg atcgcctacg tcccctattt
     2761 cccgctgggt gggttcttcc cgctgcaggt gcaggccctc tccgatatcg cccagcgcct
     2821 cggccacacg cccctgcaga tcgcgctggc gtggctgctc caccgcgcgc caaacatcct
     2881 gttgatcccc ggcacctcat ccctcggcca cctccacgaa aacctggcgg cccgcgagat
     2941 cgcgctctca gacgaggtgg tcgccgagct ggacaccata ggcgcggttc cggcccacta
     3001 gaggccgagt tctccccgca agaccgccgc catctcctcg aagacgccgt cccacacgcc
     3061 gcgctcgccc tggcggaaca ggcgcgtgcg cggataccag gggctgtccg tccgatcgat
     3121 gaaccagcgc cagtcggcca ccagcggcag cgccacccac gtccgcgcgc cgagcgcgcc
     3181 ggccagatgc gcgacactgg tgtccatggt gatgaccagg tcgcagcagg cgatcgccgc
     3241 ggcggtatcc acgaaggcgt ccggcccagg atcgaagtcg tcgcccagcg actccacgac
     3301 catgccgtcc ggcagggtgt cgagctgatc cagcccgttc accttctgca ggctgattag
     3361 gcgcacgccc tctaggcccg cgacgccgcg cagcaccgcc agcggatagg acctctgcaa
     3421 cggcagggcg tagggctggg tgctgccttg ccagacgacg ccgatcttga agccctcggt
     3481 ccccagccgg gtccgccacc gcgcaatccg ctcgggttcg gcccgcagat aaccctcggc
     3541 ctgcggcaag ctctccagcg tcgcgccgaa agctaggggc aggctcatca gcggcgtctg
     3601 gtattcgacg tcggacggtg tcgcgtgctc cgggcgcaac gcgattgtcg ggctcaggct
     3661 ggagagcagg cgatgcaggg cccgcggcgc cgccaaccgc acgcgcgccc cgccgcgctc
     3721 cgccagaacc gcgtaacggc agaactgaat caggtcgccc tggaacagct ccggccagat
     3781 gaaaagcgcc tgtccggcca gcggcgggtc acccgtccac gaccggtcca gaccgtagcg
     3841 gggatcgtcg aaagtcggac agcgccgccg ccactcatat tcctcgaacc ccgcgccgag
     3901 ctcgcccttc tgcagaaggc agaaggcgcg attgtgatgg gcgatggcca tgtctggcgc
     3961 caaggagatg gccgcgtcgt agctggcgat cgcctcgtcg atctggccca gcgagcgcag
     4021 cacgtttccg cggttgaagt gggccgcgac actgcgcgga tccaacgcca gggccacctc
     4081 aaaggccgcg cgcgccgcct cgtgccgctc cagcgccaga agggcgttgc cctgggccag
     4141 gtgcatctcc gaggcctcgg gccgaatggc gatggcgcgg accaggtagt ccagcgcgcg
     4201 ctcgggttgg ccggcctgat tggccgccag tccgaactca tgccacgcct cggcgttgcc
     4261 gccgtcgcgc cggatgatct cggtgagcag attgacgacc atcgccagat gaccctgctc
     4321 gcgaagctgg cgggcggcct ccagcagggt cgtggtgtcg agcgccgcca ggccgggatc
     4381 aatcgatggg ccggtggcca aggaagctct ccatccgcct tgacggcggc ccgtctgcta
     4441 gcagcttcac atatcgccat caaaccggcc cggcgcctat cgcccccgca tccgagtcca
     4501 gctagaagcc gcccatgagc gttgcgcccg ccaagaccac ggccgaaacg gccgccgaat
     4561 acggcctgag cgccgccgaa tacgcggtca tcgtccagcg cctgaaccgc gagccccggc
     4621 ccgtcgaact cggcgttttc tcggtcatgt ggtctgagca ctgctcctac aaatccagca
     4681 agatccacct cggcaagttc cccaccaccg gccccagggt gatctgcggc ccgggcgaga
     4741 acgccggcgt catcgacatc ggcgacggcc ccgatggcgt aaaattggcc tgcatcttca
     4801 agatggagag ccacaaccac ccctcgtata tcgaacctta tcaaggggct gcgacgggcg
     4861 ttggcggcat catgcgcgac gtcttcacca tgggcgcccg gcccatcgcg ctcttgaacg
     4921 cgctgcggtt cggcgatccc agccatccca agaccaagcg cctggtggcg ggcgtcgtct
     4981 cgggcatcgg cggctacggc aattgcgtgg gggtgccgac cgtcgccggg gagaccaact
     5041 tccatcgcgg ctatgacggc aacatcctgg tcaacgccat gtgcgtgggc ctggccgacg
     5101 ccgacaagat cttctactcg gccgccccgg ccgcgggctt gcccgtcgtc tatttcggct
     5161 ccaagaccgg ccgcgacggc atccatggcg ccaccatggc ctcccaggaa ttcgacggcg
     5221 cctccgacga aaagcgcccc accgtccagg tcggcgaccc cttcgccgag aagctcctga
     5281 tcgaggccac actcgaactg atggcctccg gcgccgtggc cgcgatccag gacatgggcg
     5341 cagccggtct cacctcctcc tccgtggaga tggccggcaa gggcggcgtc ggtgtcgagc
     5401 tgaacctgga catggtgccc cagcgcgagg agggcatgag cgcctacgag atgatgctct
     5461 ccgagagcca ggagcggatg ctggcgatcc tgaagccggg ccgcgaggcc gacggcgagc
     5521 gcatcttcgc caagtggggc ctggacgcgg ccaccatcgg ctggaccacc gacaccggcc
     5581 acctggtcct gaagcacaag ggcgagacgg tctgcgacgt gccgctggcg ccgctcttcg
     5641 acgacgcccc gctctacgac cgcccctggg tcgcgccggc cctgcagccg cgcctgaacc
     5701 ccgccgacgt gcccgccccg gcggactacg ccggagcgat cctgacgctg atgagcgcgc
     5761 cggacatggc ctccaagcgc tggctctggg agcagtacga ccgccacgtc atggccgaca
     5821 ccctggagga tagcgccacc ggcgccgacg ccggcatcgt ccgcgtccac gggaccaaga
     5881 aggcgctggc catgacctcc gacgtcaccc cccgctacgt ccagaacgac ccctacgagg
     5941 gcggcaagca ggcggtcgcc gaagcctggc gcaacctcac cgccgtgggc gcggacccca
     6001 tcgccatcac cgacaacctg aacttcggta accccgagcg cccggagatc atgggccaga
     6061 tcgtgctcgc catcgaaggc atggctgagg cctgccgcgc gctggatttc cccgtcgtga
     6121 gcggcaacgt cagcctctac aacgagacca acggctcggc cattccgccg acgcccaccg
     6181 tcggcgccgt gggcctgatc gccgactatg cgaggcgcgc cgacttctcg tc
//
LOCUS       DATAJL010000695         3924 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62323,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000695 DATAJL010000000
VERSION     DATAJL010000695.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3924
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62323"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..187
                     /locus_tag="VHN39_13275"
     CDS             <1..187
                     /locus_tag="VHN39_13275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1491 family protein"
                     /protein_id="HEX2817363.1"
                     /translation="LYAEATRLDGERVWMQPAPSDQEPDLDAYVERAVRVDPDIWVVE
                     IDDRQGRHFLTEPVEKG"
     gene            297..677
                     /locus_tag="VHN39_13280"
     CDS             297..677
                     /locus_tag="VHN39_13280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817364.1"
                     /translation="MLFLLNDTVLRLDGVAMDARLGGQRMQNLEFPAILRMGQELYTR
                     EPLLQRTNPERARRLAALICAKAPSINAALFVAPALDCAASEVTVRFVACQFEVMAEL
                     YNMQRAGELDAVSADRRIWRRLAA"
     gene            727..1128
                     /locus_tag="VHN39_13285"
     CDS             727..1128
                     /locus_tag="VHN39_13285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817365.1"
                     /translation="MVDKVTPFLMFQGDAGAAIALYRELIPAAEIKRLDHYGPGEPGP
                     EGQVSRAVLVIAGQELMIIDSPPVHAFSFTPSVSFFVDCADELEIERLFAGLAEGGLV
                     RMPLNNYGFSLRFGWVDDRFGVSWQLNLPAA"
     gene            1170..1385
                     /locus_tag="VHN39_13290"
     CDS             1170..1385
                     /locus_tag="VHN39_13290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817366.1"
                     /translation="MSRSDKSIIAIALAPNLIFCLGLFGWMAWRMASGQAPFPHGATP
                     YVMGLCAIVPMACVAVATFIRLRRDAA"
     gene            1431..3071
                     /locus_tag="VHN39_13295"
     CDS             1431..3071
                     /locus_tag="VHN39_13295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEX2817367.1"
                     /translation="MTTSLAAEASNSRLRIAAQAARRRTFAIISHPDAGKTTLTENLL
                     LAGGAIRAAGAVRARGEQRRTRSDWMKIERERGISVSASVMTFDHAGLMFNLLDTPGH
                     EDFSEDTYRTLTAADAAVMVLDAAKGIEPQTLKLFEVCRLRDIPIVTFINKMDREAQD
                     PFALLDEIASKLALDPAPLYWPAGSGGRFKGMLDLAAESFIPFAKKGAGGAGNEDGHP
                     KPIAFRGNAITSYLDADELDELTDNAELVTGASKPFDVQSFLEGHMTPVFFGSALRHF
                     GVDELLAGLGAYAPPPKGVAAVKGGEPVEVQPGDAEVSGFVFKVQANMDPNHRDRIAF
                     LRLTSGEFQRGMKLKVQNTGRQLSVNAPIMFFASDRELAEEAFAGDVIGIPNHGVLRV
                     GDSLSETGTLRFAGLPNFAPEILQRVRVKDPLKAKHLKKALEGLAEEGVTQLFRPTLG
                     ADFIVGAVGQLQFEVMADRLANEYQLEVIFEASPYAEARWIAGGKADLEDFQGKHRMQ
                     MAADIDDQPVFLAKTAWETGYVSERYPKVRFERSKERA"
     gene            3077..>3924
                     /locus_tag="VHN39_13300"
     CDS             3077..>3924
                     /locus_tag="VHN39_13300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2817368.1"
                     /translation="MGALLYGAPAPGLIEVPKGALQLSPLVPGSTDIASLADGTADSA
                     TVLAPPGTLERDFVLAQALRVLKPGAPLTAFAPKDKGGSRLRKALEGFGCAVTEDARK
                     HHRFCSVTRPAEPKGLAAAIEAGSPRIVPALGLWSQPGVFSWDRPDPGSVRLLEVLPA
                     LYGEGADLGCGIGLLARAVLTSPKVKALTCADIDGRAVACAEHNLDDERARVVWADLR
                     RPLEGLADLDFVVMNPPFHDGGAEDKALGVAFIEVAARMLSKRGVCWLVANRHLPYEA
                     ALAKAFT"
BASE COUNT          615 a         1314 c         1381 g          614 t
ORIGIN      
        1 cctctatgcc gaggcgacgc ggctggacgg cgaacgggtg tggatgcagc cggcgccctc
       61 ggaccaggag ccggacctcg acgcctatgt cgaacgggcc gtgcgcgtgg accccgacat
      121 ctgggtggtg gagatcgacg accgccaggg ccggcatttc ctgaccgaac cggtggaaaa
      181 gggctgaacg ggctagcgtt ttggccggtt aaccgcgctc gtgaacggcg atgaaagcct
      241 gacctgccac aagggccgct cagctagata tcgcccgaag gccgcccagt tcccgcatgc
      301 tgttcctgct gaatgacacc gtcctgcgtc tcgatggcgt ggccatggac gcacggctgg
      361 gcggacagcg gatgcagaac ctggagttcc cggcgatcct gcgcatgggc caggagcttt
      421 acacccgcga gcccctgctg cagcggacca accccgagcg ggcgcgccgc ctggccgcgc
      481 tgatctgcgc caaggcgccc agcatcaatg cggctctgtt cgtggcgccg gcgctggact
      541 gcgcggcgtc ggaggtgacc gtgcgcttcg tggcctgcca gttcgaggtc atggccgagc
      601 tctacaacat gcagcgggcg ggcgagctcg acgcggtgag cgccgaccgc aggatctggc
      661 gccgactggc ggcctagccg tagtccgtgc tttcctcggc gccgattagc agcgcgcgag
      721 gatccgatgg tcgacaaggt cacccccttc ctgatgttcc agggcgatgc gggcgccgcg
      781 atcgcgctct atcgcgaact gatcccggcc gcggagatca agcggctgga ccactacggc
      841 ccgggcgagc cggggccaga aggccaggtc agccgcgcgg tgctggttat cgccggccag
      901 gagttgatga tcatcgacag cccgccggtg cacgctttca gcttcacccc ctcggtttcc
      961 ttcttcgtgg actgcgccga cgagctggag atcgagcgcc tgttcgccgg cctggccgag
     1021 ggcggcctcg tgcggatgcc gctgaacaac tatggctttt ccctgcggtt cggctgggtg
     1081 gacgaccgct tcggtgtctc ctggcagctc aacctgcctg ccgcctgaca gacatggcgc
     1141 cgctcgccga gcggagttat cctgagccca tgagccgcag cgacaaatcg atcatcgcca
     1201 tcgccctggc gcccaacttg atcttctgcc tgggcctgtt tggctggatg gcttggcgga
     1261 tggcgtcggg acaggccccg ttcccgcacg gcgcgacgcc atacgtcatg ggcctgtgcg
     1321 cgattgtgcc catggcctgc gtcgccgtgg ccacctttat ccgactgcgc cgcgacgccg
     1381 cctgaccggc gggtttgcga aacggagcgc ggcacgctac ctgcccgccc atgaccacct
     1441 ccctcgccgc cgaggcctcc aattctcgcc taaggatcgc cgcccaggcg gccaggcggc
     1501 gaacctttgc gatcatctcc catcctgatg ccggcaagac gacgctgacc gagaacctgc
     1561 tgctggcggg cggggcgatc cgggccgccg gcgcagtgcg ggcgcgcggc gagcagcggc
     1621 gcacgcgctc cgactggatg aagatcgagc gcgagcgggg catctccgtc tcggccagcg
     1681 tcatgacctt cgaccacgcg ggcctgatgt tcaatctgct ggacaccccg ggccacgagg
     1741 acttctcgga agacacctac cggacgctga cggccgcaga cgccgccgtc atggtgctgg
     1801 acgcggccaa ggggatcgag ccgcagacgc tgaagctgtt cgaggtctgc cgcctgcgcg
     1861 acatcccgat cgtcaccttc atcaacaaga tggaccgcga agcgcaggac cccttcgcgc
     1921 tgctggacga gatcgcctcc aagctcgccc tcgatccggc gcccctctac tggccggctg
     1981 ggtccggagg gcggttcaag ggcatgctgg acctggcggc cgagagcttc atccccttcg
     2041 ccaagaaggg cgcgggcggg gccggcaacg aggatggcca tcccaagccg atcgccttca
     2101 ggggcaacgc gatcaccagc tacctcgacg ccgacgaact ggacgagctc accgacaacg
     2161 ccgagctggt gaccggcgcg tcgaagccct tcgatgtgca gtccttcctg gaaggccaca
     2221 tgacgccggt gttcttcggc tcggcgctca ggcacttcgg ggtggacgaa ctgctggcgg
     2281 gcctgggcgc ctacgccccg ccgcccaagg gcgtcgcggc ggtcaagggc ggggagcccg
     2341 tcgaggtcca gcccggcgat gcggaggtct ccggcttcgt cttcaaggtc caggcgaaca
     2401 tggaccccaa tcaccgcgac cggatcgcct tcctgcggct gacgtcgggc gagttccagc
     2461 gggggatgaa gctgaaggtc cagaacaccg ggcggcagtt gagcgtcaac gccccgatca
     2521 tgttcttcgc ctccgaccgc gagctggccg aagaggcctt cgccggcgac gtgatcggca
     2581 ttccgaacca tggcgtgctc agggtcggcg acagcctgtc ggagaccggg accctgcggt
     2641 ttgccggtct gcccaacttc gcgccggaaa tcctgcaacg ggtgcgggtg aaggacccgc
     2701 tgaaggccaa gcacctgaag aaggcgctcg agggcctggc ggaagagggc gtcacgcagc
     2761 tgttccggcc gactctgggc gcggacttca tcgtgggcgc ggtggggcaa ctgcagttcg
     2821 aggttatggc cgataggcta gccaacgaat accagctgga ggtgatcttc gaggccagtc
     2881 cttatgccga ggcgcgctgg atcgccgggg ggaaggccga tctggaggac ttccaaggca
     2941 agcaccgaat gcagatggcg gccgatatcg acgaccagcc ggtgttcctg gccaagaccg
     3001 cctgggagac cggctatgtt tccgaacgct atcccaaggt ccgcttcgag cggtcgaagg
     3061 aacgggcctg aggccggtgg gcgctctgct ctatggcgcg cccgcgccgg ggctgatcga
     3121 ggtcccgaaa ggcgccctgc agctctcgcc gctggtcccg ggatcgacgg acatcgcgag
     3181 tctggcggac ggcacagccg acagcgccac ggtgctcgcg ccgcccggga cactggagcg
     3241 ggacttcgtg ctggcccagg cgctgcgggt cctgaagcct ggcgcgccac tcaccgcctt
     3301 cgcgcccaag gacaagggcg gatcgcggct gaggaaggcc ctggagggct tcggctgcgc
     3361 cgtcactgag gacgcgcgga aacatcaccg gttctgcagc gtcacgcgtc cggccgagcc
     3421 gaagggcctc gcagcagcga tcgaggccgg gagcccacgg atcgtgccgg cgctgggact
     3481 ctggtcgcag ccgggggttt tcagctggga ccgccccgat ccgggcagcg tgcggctact
     3541 ggaggtgctg ccggcgctct atggcgaggg cgcggacctg ggctgtggga tcggtttgct
     3601 ggcccgcgcc gtgctgacct cgccgaaggt caaggcgctg acctgcgctg acatcgatgg
     3661 ccgcgccgtg gcctgcgccg agcacaatct ggacgacgag cgggccaggg tggtctgggc
     3721 ggacctgcgg cggccgctgg agggcctggc cgacctcgac ttcgtggtga tgaacccgcc
     3781 gttccatgac ggcggggcgg aggacaaggc cctgggcgtg gccttcatcg aggtggcggc
     3841 gcggatgctg agcaagcgcg gcgtgtgctg gctcgtcgcc aaccgacacc tgccctacga
     3901 ggcggcgctg gccaaggcct tcac
//
LOCUS       DATAJL010000696         2333 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51162,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000696 DATAJL010000000
VERSION     DATAJL010000696.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51162"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..1730)
                     /gene="ggt"
                     /locus_tag="VHN39_13305"
     CDS             complement(45..1730)
                     /gene="ggt"
                     /locus_tag="VHN39_13305"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006750 - glutathione biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HEX2817369.1"
                     /translation="MRTVTQIAAALLAFLLVGAPCGQAAARPPSLSAGAVASPDRYGA
                     SAAREVLKAGGSAVDAAVATAFALAVTYPEAGNLGGGGFMTLYVDGKPYFLDYRETAP
                     AGASAGMYLDRSGRPITSLSLVGTLSSGVPGTVRGMAEAHRRFGKLAWARDLAPAIRL
                     ARGGFVVPQALIGEREANRRDFAGVTNFDRYFAAMTEGKVFRQPELAATLARIAKGGD
                     REFYEGRTAELVVEQMGRGPAKGLVSKSDLAGYKAVWREPLQGDWRGYRVITAPPPSS
                     GGIALLQMLTMKADAAALFAGVDLNSPQYLHLVSEIEKRVFADRAEYLGDPDFVKVPV
                     AALTDPAYIARRAASIDPKAPSALKAVRPGLEKPQTTHFSVVDRWGNAVSNTYTLNGS
                     FGAGVVVEGAGFLLNDEMDDFSAKPGAPNQFGVVGGEANAIAPFKRPLSSMSPTILLR
                     DGQVAMVIGTPGGSRIFTSVFQVLADVYDFRQPLKTALAALRFHHQLLPENTIYSEPY
                     APFPPALRAAMQARGYRLEAQDFNGDIEAIQVVGGAPHAAADPRGRGVALSVR"
     gene            complement(1763..>2333)
                     /locus_tag="VHN39_13310"
     CDS             complement(1763..>2333)
                     /locus_tag="VHN39_13310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008258906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2817370.1"
                     /translation="GGEFGPRWHNAGLKLNRMRVYEDFFAVSQDLIARKITSARKLGI
                     EGGSNGGLLMGVALTQHPELYNAIVIQVPLFDMIGYTHIGAGASWVGEYGDPAIPAER
                     AVLDSYSPYQLLAAGKPYPRVFLETSTKDDRVHPAHARKAAARLKELGYDYLYYENVD
                     GGHAASANLNERAMRIALEYTYLAQRLMS"
BASE COUNT          354 a          818 c          807 g          354 t
ORIGIN      
        1 ccgcaggcgg ttgctcccta gccgttcgcg gaccgcgcgc gcgcctagcg caccgacaag
       61 gcgacgcccc gtccgcgggg gtcggccgcc gcgtgaggcg cgcctccgac cacctggatc
      121 gcctcgatgt cgccgttgaa gtcctgcgcc tccaggcgat agccccgcgc ctgcatcgcc
      181 gcgcgcaagg ctggcgggaa cggagcgtag ggttccgaat agatggtgtt ttccggcagc
      241 agctgatggt ggaaccgcag ggcggcgagc gcggtcttca gcggctgccg gaagtcgtac
      301 acatccgcca gcacctggaa caccgaggtg aagatgcgtg agccgcccgg cgttccgatg
      361 accatggcca cctggccgtc tcgcagcagg atcgtcgggc tcatggagga gagcggccgc
      421 ttgaacggtg caatagcgtt ggcctcgccg cccaccacgc cgaattgatt gggcgcgcct
      481 ggcttggcgg agaaatcgtc catctcgtcg ttgagcagga agccagcgcc ctccaccacc
      541 acgcccgcgc cgaacgaccc gttcagggta taggtgttgg agaccgcgtt gccccagcga
      601 tcgaccactg agaaatgcgt ggtctgaggc ttctcaagcc ccggcctgac cgccttcagg
      661 gccgaaggcg ccttggggtc gatcgatgcg gcgcggcggg cgatataggc cgggtccgtc
      721 agcgcggcca ccggaacctt cacgaagtcg gggtcgccca gatattcagc gcggtcggcg
      781 aagacccgct tctcgatctc ggacaccagg tggagatact gcggcgagtt caggtccacg
      841 ccggcgaaca gcgcggcggc gtccgctttc atcgtcagca tctgcaggag cgcgatgccg
      901 ccggaactcg gcggcggcgc ggtgatcacc cggtagcctc gccagtcgcc ctgcagcggt
      961 tcgcgccaga ccgccttgta gcccgccagg tccgacttgc tgaccagccc cttcgccggc
     1021 ccgcggccca tctgctcgac caccaactcg gcggtccggc cctcgtagaa ctcacggtcc
     1081 ccgcccttgg cgattcgcgc cagggtggcg gccagctccg gctgccggaa caccttcccc
     1141 tcggtcatgg cggcgaagta gcgatcgaag ttggtgacgc cggcaaagtc gcgccgattg
     1201 gcctcgcgtt cgccgatcag ggcctgcggg accacgaacc cgccgcgcgc gagccggatc
     1261 gccggtgcga ggtcccgcgc ccaggcgagt ttgccgaagc gtcgatgggc ctcggccatg
     1321 ccgcgcacgg tcccggggac cccgctcgac agcgtcccca ccaggctgag gctggtgatc
     1381 ggccggcccg accggtccag gtacatgcca gcactggccc cagccggcgc cgtctcgcgg
     1441 tagtccagga agtagggctt gccgtcgaca tagagcgtca tgaagccgcc gccgccgagg
     1501 ttgccggcct cagggtaggt caccgccagg gcgaatgcgg tggccaccgc ggcgtccacc
     1561 gcactgccgc cggccttcag cacctcgcgg gccgcagacg cgccatagcg atccggcgag
     1621 gccaccgcgc cggcgcttag cgagggcggt ctcgccgcgg cctgaccgca cggcgcgccg
     1681 acgagcagga aagccagcag ggcggccgcg atctgggtga ctgtccgcaa ggtgtctccg
     1741 tccgcgcgat cggggccggg cttcacgaca tcaaccgctg ggccaggtag gtgtattcca
     1801 gcgcgatccg catggcccgc tcgttgaggt tggccgaggc cgcgtggccg ccatcgacgt
     1861 tctcgtaata gaggtagtcg tagcccagtt ccttcaggcg ggccgcggcc ttgcgggcgt
     1921 gggccggatg cacccggtcg tccttggtcg aggtctccag gaacaccctc ggatagggct
     1981 tgccggcggc cagcagctgg tagggcgaat aactatccag gaccgcccgc tcggccggga
     2041 tcgccgggtc gccgtactcg cccacccagg aggcgccggc gccgatgtgg gtgtagccga
     2101 tcatgtcgaa cagcggcacc tggatgacga tggcgttgta gagctccgga tgctgggtga
     2161 gcgccacgcc catcaagagg ccgccgttcg agccgccctc gatcccgagc ttccttgccg
     2221 aggtgatctt gcgcgcgatc aggtcctggc tgaccgcgaa gaagtcctcg tagacccgca
     2281 tgcggttgag cttgaggccg gcgttgtgcc agcgcggccc gaactccccg ccc
//
LOCUS       DATAJL010000697         2495 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_12396,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000697 DATAJL010000000
VERSION     DATAJL010000697.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12396"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1512)
                     /gene="rpsA"
                     /locus_tag="VHN39_13315"
     CDS             complement(<1..1512)
                     /gene="rpsA"
                     /locus_tag="VHN39_13315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEX2817371.1"
                     /translation="MADDMSMNPTREDFSALLDESLGGRDFMEGQVVQGKVVAIEKDI
                     AIIDVGLKTEGRVSLKEFGEEEGKDPIKVGDTVEVFLERVENAMGEAVLSRDKARREE
                     AWTRLEAVYERNEPVMGAIVGRVKGGFTVDLGGASAFLPGSQVDIRPVRDVGPLMGRE
                     QPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVSQLQEGEVREGVVKNITDYGAFV
                     DLGGIDGLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVKINPDTQRISLGMKQLQSDPW
                     DGVEAKYPVGAKFTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTS
                     QEVEVVVLDVDPSKRRVSLGLKQAMANPWDAFVAAHPVGSTVEGEVKNATEFGLFIGL
                     ENDIDGMVHLSDLDWAVPGEEAIAKYNKGDMVKAKVLDVDVEKERISLGIKQLAGDPM
                     TGDTYRKGQTVTVQVMEITTGGIEVRFGDESAPMQTFIRKSDLSRDRSEQRPER"
     gene            complement(1670..2341)
                     /gene="cmk"
                     /locus_tag="VHN39_13320"
     CDS             complement(1670..2341)
                     /gene="cmk"
                     /locus_tag="VHN39_13320"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004127 - cytidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEX2817372.1"
                     /translation="MSDTPARPAFFVIAVDGPAASGKGTIATGLAEHYGLPVLDTGLL
                     YRCVGVLMSRAHEDLDDEPAATAAAILLTADQLDDPALRTRAAGELASRVAVHPRVRD
                     ALLEFQRTFAGQEGGAVLDGRDIGTVIAPDAPAKLYVTATPEVRAERRWKQLKAQGEA
                     VSLADVLEDIRRRDARDGGRDAAPMRAAPDAVLLDTSEMTIEQAADAARRIVEAARAR
                     WNISS"
     gene            complement(2338..>2495)
                     /locus_tag="VHN39_13325"
     CDS             complement(2338..>2495)
                     /locus_tag="VHN39_13325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEX2817373.1"
                     /translation="STHGDHRIAMSHLILGLASAEPVAVDEPGMIATSFPGFLDLMRS
                     LGGEIEA"
BASE COUNT          365 a          822 c          855 g          453 t
ORIGIN      
        1 gcgctcgggg cgttgttcgc tccggtcgcg ggagaggtcg gacttgcgga tgaaggtctg
       61 catcggcgcg ctctcgtcgc cgaagcgcac ttcgatgccg ccggtggtga tttccatcac
      121 ctgcacggtg accgtctggc ccttgcggta ggtgtcgccg gtcatcgggt cgccggccag
      181 ctgcttgatg ccgagcgaga tgcgttcctt ctccacgtcg acgtccagca ccttggcctt
      241 gaccatgtcg cccttgttgt acttggcgat ggcttcctcg ccgggcacgg cccaatccag
      301 atcggacagg tgcaccatgc cgtcgatgtc gttttccagg ccgatgaaca ggccaaactc
      361 ggtggcgttc ttgacttcgc cctcgacggt cgagccgacc gggtgagccg ccacgaaggc
      421 gtcccacgga ttggccatgg cctgcttcag gcccagcgac acgcggcgct tggacggatc
      481 gacgtccagc acgactactt cgacttcctg agaggtggag acgatcttgc ccggatggac
      541 gttcttcttg gtccaggaca tttcggagac gtgcaccagg ccctcgacgc cggcttccag
      601 ctccacgaag gcgccgtagt cggtgatgtt ggtgatgcgg ccggtgaact tcgcgcccac
      661 cggatacttg gcttccacgc catcccacgg gtcggactgc agctgcttca tgccgagcga
      721 gatgcgctgg gtgtcggggt tgatcttgac gatctgcacc ttgaccgtgt cgcccaccgc
      781 cagaacctgg ctcgggtggt tgacgcgctt ccagctcatg tcggtgacgt gcagcaggcc
      841 gtcgatgccg cccaggtcca cgaacgcgcc gtagtcggtg atgttcttga ccacgccttc
      901 gcggacttcg ccctcttgaa gctgggagac cagctcggtg cgctgctcgg cgcgggcttc
      961 ctcgaggatc gcacgacggg aaacgacgat gttcccgcgg ggcctatcca tttttagaat
     1021 ggcgaagggt tgctcgcggc ccatcagcgg accgacgtcg cggacggggc ggatgtcgac
     1081 ctgggagccg ggcaggaagg ccgaggcgcc gccgaggtcg acggtgaagc cgcccttcac
     1141 gcggccgacg atggcgccca tgacgggctc gttgcgctcg tagacggctt cgaggcgggt
     1201 ccaggcttct tcgcggcggg ccttgtcgcg cgacagaacg gcttcgccca tggcgttttc
     1261 gacgcgttcg aggaacacct cgacggtgtc gccgaccttg atcgggtcct tgccttcttc
     1321 ctcgccgaat tccttcagcg agacgcggcc ctcggtcttg aggcccacgt cgatgatggc
     1381 gatgtccttc tcgatcgcca cgaccttgcc ctggacaacc tgaccttcca tgaagtcgcg
     1441 gccaccaagg gactcgtcca gcaacgcgga aaagtcttca cgcgtcgggt tcatgctcat
     1501 atcgtcagcc atagaatctc ttgtctttcg aatgacttga ggccccgcac agccaagctg
     1561 tcggacggag tccccacgtc gggttaaggg ttgaaccgaa ggcgcggggg ataccccacg
     1621 ctttagtgaa tctgcccgca gctgccgagg ggaaagcgcg ttgggattgc tagctggaga
     1681 tgttccagcg ggctcgcgcg gcctcaacga tgcggcgggc cgcatcggcg gcctgctcta
     1741 tagtcatttc ggaggtgtcc agcaagacgg cgtcgggcgc ggcccgcatc ggcgcggcgt
     1801 cccggccccc gtcgcgggcg tcgcggcggc ggatgtcttc cagcacgtcg gccagcgaaa
     1861 cggcctcccc ctgggccttc agctgcttcc agcggcgctc ggcgcggacc tccggcgtcg
     1921 cggtgacata gagcttggcc ggggcgtcgg gggcgataac cgtgccgatg tcgcgtccgt
     1981 ccagcaccgc gccgccctcc tggcccgcga aggtgcgctg gaactccagc agggcgtcgc
     2041 gcacccgggg atgcaccgcc acccggctgg cgagctcgcc ggcggcgcgg gtgcgcagcg
     2101 ccgggtcgtc gagctggtcg gcggtgagca ggatcgcggc cgcggtcgcc gccggctcgt
     2161 cgtccaggtc ctcgtgcgcg cggctcatca ggacgcccac gcagcggtag agcaggccgg
     2221 tgtccagcac cggcaggccg tagtgctcgg ccaggccggt cgcgatcgtc cccttgcccg
     2281 aggccgccgg accatccacg gcgatgacga agaacgcggg tctggcgggc gtgtcgctca
     2341 cgcctcgatc tccccgccga gcgaacgcat caggtccagg aagcccggga agctggtggc
     2401 gatcatgccg ggttcgtcga cggcgacggg ttcggccgac gccaggccca ggatcaggtg
     2461 gctcatggcg atgcggtggt cgccatgggt ggaga
//
LOCUS       DATAJL010000698         4923 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95421,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000698 DATAJL010000000
VERSION     DATAJL010000698.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4923
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95421"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1920
                     /locus_tag="VHN39_13330"
     CDS             <1..1920
                     /locus_tag="VHN39_13330"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HEX2817374.1"
                     /translation="LKDAAQGTLTVLSVDRKQRKRNPAPPFTTSTLQQEASRKLGFNA
                     QRTMQAAQRLYEGIDIGGETVGLITYMRTDGVQTAPEALDEARAVIGGLYGKDYVPEK
                     PRFYSTKAKNAQEAHEAIRPTSLGRNPGKLRLDPDLGRLYELIWKRMIASQMESARIE
                     RTTIDLESSDGKTALRASGDVTLFDGYLAVYEEGRDDPEEEAVSKLPQVTQGAAAKTI
                     AARADQHFTEPPPRYSEASLVKKMEELGIGRPSTYASVLTVLRDREYVRMDKNRFIPE
                     DKGRLVTIFLEEFFLRYVEYDFTADLEEKLDKVSAGELDWKVLLREFWKDFYPKTEEI
                     LGLTTRSVLDSLDEALAPFLYPPKADGSDVRACPTCGAGRLSMKTSRFGPFVGCSNYP
                     ECRYTRPIGEKEDGESPSGDRELGVDDISGMIVFLKSGRFGAYVQLGDGEKPKRSSLP
                     KGWSAPDMDLEKGLRLLRLPREVGLHPEDNQPILAGIGRFGPFVLHAGTYANLTGADE
                     VFEVGLNRAVTLLAEKRAGRAGRGESTALKDLGAHPADGAPVRVLSGRYGPYIKHGAT
                     NANVPRGTDPQDVTLEQAVLLLAERAAKGGGKKKPARAAKAKAAPKAAAVGGKAPAKK
                     KPAKKKAAAKKKASA"
     gene            1968..2768
                     /locus_tag="VHN39_13335"
     CDS             1968..2768
                     /locus_tag="VHN39_13335"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2817375.1"
                     /translation="MPVTTVNGLNLYFERAGSGPPLLFISGTGGDLRNKPNVFDGPLA
                     KAFDLVAYDQRGLGQSAKPDILYAMADYADDAAALMADQGWDEALVIGVSFGGMVAQE
                     LAIRHPARVKRLVLACTSPGGAGGASFPFHEIEHLKGETRARYLIPISDTRRDDAWAA
                     AHADQHALFVAMGAADPYADEPGHTMGARRQLEARAAHDTWDRLPQIACPTLIAAGRY
                     DGIALPAAQEKMAARIPGAKLQWFEGGHLFIIQDRTAATAMAAFLTEA"
     gene            complement(2765..3925)
                     /locus_tag="VHN39_13340"
     CDS             complement(2765..3925)
                     /locus_tag="VHN39_13340"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0030554 - adenyl nucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEX2817376.1"
                     /translation="MLSGTHRFPRQDQVTYGRPAAEVLKELAGSYGAHRLMITTTASL
                     ADGLAAQVAADLGDLCVGVFSAIGAHSPREGVIAGAAEARRLDADLLVALGGGSAIDA
                     TKVMQLCLWAGLTKVEHLDAYRAGRGSDRVKVAEIPAGVRMLAVPTTLSAAEFTPFAG
                     VTDVARHAKEGYGHPLLAPRAVILDPAMTLATPPMLWFSTGLKAVDHAVEQLCNPMRA
                     PFADALAEDGLRRLTRGLAATKADPADLDARLDCQFGMWLAMSGVGSGRGMGPSHAIG
                     HTLGGGYGVPHGVTSCIVLPAVLKWYGPAAADRLALVSELMGARTLSASDAVKRLVEG
                     LGLPTSLASVGIGPESFQAIAEHTLHDAGVRTGARPIAGAQDIVEILELAAG"
     gene            4133..>4923
                     /locus_tag="VHN39_13345"
     CDS             4133..>4923
                     /locus_tag="VHN39_13345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEX2817377.1"
                     /translation="MPKPRQPKSSRFPKGLPDRETLLKYVRDSGETDKNAIAKAFALK
                     GEERRALRQLLQTMEAEGALGRRGRSGFAEVGALPEVGVVDVVDRDADGELFVKLTKG
                     DDAPLVVLAASRKGDTGPAPGMGDRLLVRFVKLESGEHEARVIKSLGAGAQRVLGVIR
                     KSRHEVRVEPVDRRSKDSLLLTDPKAHELRDGDLVLAQATAAETRFGPKRGKLLEVIG
                     REDEPRAASLIAIHAHGIPTGFSSAAEAEAEAAQPPTLAGREDLRR"
BASE COUNT          834 a         1729 c         1706 g          654 t
ORIGIN      
        1 cttaaagatg ctgcccaagg cacgctcacg gtattgagcg tcgaccgcaa gcagcgcaag
       61 cgcaatcccg ccccgccctt caccacctcg accctgcagc aggaggcctc gcgcaagctc
      121 ggcttcaatg cgcaacggac catgcaggcg gcgcagcggc tctatgaggg tatcgacatc
      181 ggcggcgaga ccgtcggcct gatcacctac atgcggactg acggtgtgca gaccgcgccc
      241 gaggcgctgg acgaagcgcg ggccgtgatc ggtgggctct acggcaagga ctatgtgccg
      301 gaaaagccgc gcttctattc caccaaggcc aagaacgccc aggaggccca cgaggcgatc
      361 cgcccgacga gcctgggccg caatcccggc aagctcaggc tcgatcccga cctcggccgg
      421 ctctacgagc tgatctggaa gcggatgatc gcctcgcaga tggaaagcgc ccgcatcgag
      481 cgaacgacca tcgacctgga gtcgagcgac gggaagaccg cgctgcgcgc ctccggcgac
      541 gtgacgctct tcgatggcta tctggcggtt tatgaggaag gccgcgacga ccccgaagaa
      601 gaggccgtct ccaagctgcc gcaggtgacg caaggcgccg ccgccaagac catcgccgcc
      661 cgcgccgacc agcacttcac cgagccgccg ccgcgctatt cggaagccag cctcgtgaag
      721 aagatggaag agctcggcat tgggcggccc tccacctacg cctcggtgct gaccgtgctg
      781 cgcgaccgcg aatatgtgcg gatggacaag aaccggttca ttccggagga caagggccgg
      841 ctggtcacga tcttcctgga ggagttcttc ctccgctacg tcgagtacga cttcaccgcc
      901 gacctggagg agaagctcga caaggtctcg gcgggggaac tcgactggaa ggtcctgctc
      961 cgcgaattct ggaaggactt ctatccgaag accgaggaga tcctgggcct cacaacccga
     1021 tcggtgctgg acagcctgga cgaggcgctg gcgcccttcc tctatccgcc gaaggccgac
     1081 ggctccgatg ttcgcgcctg cccgacctgc ggcgccggcc gcctcagcat gaagaccagc
     1141 cggttcgggc ccttcgtcgg ctgctcgaac tatccggaat gccgctacac ccgcccgatc
     1201 ggcgagaagg aggatggcga gagcccctcc ggcgaccgcg aactgggcgt cgatgacatc
     1261 tcgggcatga tcgtgttcct gaaatccggc cgtttcggcg cttacgtcca gctgggcgac
     1321 ggcgaaaagc ccaagcgctc cagcctgccc aagggctggt cggcgcccga catggacctg
     1381 gagaagggcc tgcggctcct gcgcctgccg cgcgaggtgg gcctgcaccc cgaggacaac
     1441 cagccgatcc tggccggcat cggccgcttc gggcccttcg tgctgcacgc cgggacctac
     1501 gccaacctta cgggcgcgga tgaagtgttc gaggtgggcc tgaaccgggc cgtgaccctg
     1561 ctggccgaga agcgggcggg ccgcgcggga cgcggcgagt ccacggcgct gaaggacctg
     1621 ggcgcccacc cggcggatgg cgcgccagtg cgcgtgctct ccggccgcta cggcccctac
     1681 atcaagcacg gcgcgaccaa cgccaacgtc ccgcgcggga cggacccgca ggatgtgacc
     1741 ctggagcagg cggtcctgct gctggccgag cgcgcggcga agggcggcgg caagaagaag
     1801 ccggcccgcg ccgccaaggc gaaggcggcg cccaaggctg cggcggtcgg cggcaaggcg
     1861 cctgcgaaga agaagccggc caagaagaag gcggcggcga agaagaaggc cagcgcctag
     1921 atcagccgac gactaggatg ggagacctcg caggccggag cgcgtggatg cccgtcacga
     1981 ccgtcaacgg actgaacctc tatttcgagc gcgcgggttc gggcccaccc ctgctgttca
     2041 tctccgggac cggcggcgac cttcggaaca agcccaacgt cttcgacggg ccgctggcga
     2101 aggcgttcga tctggtggcc tacgaccagc gcggcctggg gcagagcgcg aagcccgata
     2161 tcctctacgc catggccgac tacgccgatg acgcagccgc gctgatggcg gaccagggct
     2221 gggacgaagc cctggtgatc ggggtctcgt tcggtgggat ggtagctcag gagctggcga
     2281 tccggcatcc ggcgcgcgtg aagcgcctgg tgctggcctg cacctcgcca ggcggcgccg
     2341 gcggcgcgtc gtttccgttt cacgagatcg agcatctgaa gggcgagacg cgcgcccgct
     2401 acctgatccc gatcagcgat acgcggcgcg acgacgcctg ggccgcggcc catgcggacc
     2461 agcacgccct cttcgtggcc atgggcgcgg cggaccccta tgccgacgag ccgggccaca
     2521 ccatgggcgc gcgccgccag ctggaggccc gcgccgcgca cgacacctgg gaccggctgc
     2581 cccagatcgc ctgcccgacc ctgatcgccg cgggtcgcta cgacggcatc gccctgccgg
     2641 cggcccagga gaagatggcc gcgcggattc cgggcgcgaa gctgcagtgg ttcgaaggcg
     2701 gtcacctgtt catcatccag gaccgcacgg cggcgacggc catggcggcc ttcctgaccg
     2761 aagcctaacc ggcggccagt tccagaattt caacgatgtc ctgggctccc gcgatgggcc
     2821 gcgcgccggt gcggactccg gcgtcgtgca gcgtgtgctc ggcgatggcc tggaagctct
     2881 cggggccgat accgacgctg gcgaggcttg tgggaagtcc aagaccctcg accagccgct
     2941 tcaccgcgtc cgacgccgac agggtccggg cgcccatcag ctcgctcacc agggccaggc
     3001 ggtcggcggc ggcggggccg taccacttca gcaccgccgg caggacgatg caggaggtga
     3061 cgccgtgcgg cacgccgtag ccgccgccca gggtgtggcc gatggcgtgg ctggggccca
     3121 tgccgcggcc ggatccgacc ccgctcatgg ccagccacat gccgaactgg cagtcgagcc
     3181 gcgcgtcgag gtccgccgga tcggccttgg tggcggcgag cccgcgggtc aggcggcgca
     3241 ggccgtcctc ggccaacgcg tcggcgaagg gcgcgcgcat cgggttgcag agttgttcga
     3301 ccgcgtggtc caccgccttc aggccggtgg agaaccagag catcggcggg gtggcgagcg
     3361 tcatggctgg atcgaggatc acggcccggg gcgccagcaa cgggtggccg tagccctcct
     3421 tggcgtgccg ggcgacgtcg gtgaccccgg cgaagggcgt gaactcggcg gccgagagcg
     3481 tcgtgggcac ggccagcatc cgcaccccgg ccggaatctc ggcgaccttc acccggtccg
     3541 agccgcggcc ggcgcgatag gcgtccaggt gctccacctt ggtcaggccg gcccaaaggc
     3601 agagctgcat caccttggtg gcgtcgatgg ccgagccgcc gcccagcgcc accagcaggt
     3661 cggcgtccag ccgccgggcc tccgccgcgc cggcgatcac cccctcacgc ggtgaatggg
     3721 cgccgatggc tgagaagacg ccgacgcaaa ggtcgccgag atccgccgcg acctgagccg
     3781 ccagcccgtc ggccagggag gctgtcgtgg tgatcatgag gcgatgcgcg ccataggacc
     3841 cggccagctc cttcagcacc tcggcggccg ggcggccgta ggtcacctgg tcctggcggg
     3901 gaaaacggtg ggttccgctg agcatgaggc gttctcctgg tcccacccta acggcccatg
     3961 tggccgaaag aggtgcaatc ttaaccggca agccctatat gagccttgcg cagcgctggc
     4021 cggaaaggcc gcgccaagtg cgttcgcccc aaatcgttgt ggccgccgcc aagggtttcg
     4081 cgccccctta cccaacactc aagaacacct acgaaaggtg ctaagcaccc ctatgcctaa
     4141 accaagacaa cccaagtcct cccgctttcc gaaaggcctg cccgaccgag agactttgct
     4201 gaaatacgtc cgcgactcag gcgagaccga caagaacgcc atcgccaagg ccttcgccct
     4261 gaagggcgaa gagcgccggg cgctccgcca actgcttcag accatggaag ccgaaggtgc
     4321 gctgggccgc agaggccgca gcggcttcgc cgaggtcggc gccctgcccg aggtcggcgt
     4381 ggtcgacgtc gtcgaccggg acgccgacgg cgaactcttc gtcaaactca ccaagggcga
     4441 tgacgccccg ctggtggtcc tggccgccag ccgcaagggc gacaccgggc ccgcgcccgg
     4501 catgggcgac cgcctgctgg tccgcttcgt taagctggag agcggcgagc acgaggcccg
     4561 cgtgatcaag tcgctgggcg ccggcgccca gcgcgtgctg ggcgtcatcc gcaagtcccg
     4621 ccacgaggtc cgcgtggagc cggtggaccg ccgttccaag gacagcctgc tgctcaccga
     4681 tcccaaggcc cacgagctgc gcgacggcga tctggtgctg gcccaggcga ccgccgcgga
     4741 gacccgcttc gggcccaagc gcggcaagct cctggaagtg atcggccgcg aggacgagcc
     4801 ccgcgccgcc tcgctgatcg ccatccacgc ccacggcatc cccaccgggt tcagctccgc
     4861 cgcggaggcc gaagccgagg cggcccagcc gccgacgctc gccggccgcg aggatctgag
     4921 gcg
//
LOCUS       DATAJL010000699         1703 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_83891,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000699 DATAJL010000000
VERSION     DATAJL010000699.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_83891"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(172..1422)
                     /locus_tag="VHN39_13350"
     CDS             complement(172..1422)
                     /locus_tag="VHN39_13350"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817378.1"
                     /translation="MTAVLADAVDPADPTPPPAIAPLAWAPWLLAVACGVTVANLVYA
                     QPLTGPIGAALGLPAAARGLIVTLPQAGYGLSLLLIVPLADLLENRRLVLTLLLLELV
                     CLLVLSFAARPVTFLGLAFLVGLTAAVVQVLLPYVTYLVPEADRGRAVATVVSGIMFG
                     IMLARPLSSLVADLWSWRVMFRISAILMTVLALVLRLVLPKRLPAPGLTYPTLLRSMG
                     AIFFSTELLRRRALYHACLFASFSAFWTAAPLWLSGRQFGLSQGGVAWIALAGVAGAL
                     APPLASRLIDRGLTRHGTVAAMILVVAAFAVSMLARNGSHLAIGAVVLAAIILDAAVS
                     ANMVFGQRAIYALAAEHRSRLNGLYMATFFTGGAIGSALSGWAYSRFGWTAVALLGMA
                     LPMLSLVYVVTERRASKTPVRRVV"
     gene            complement(1419..>1703)
                     /locus_tag="VHN39_13355"
     CDS             complement(1419..>1703)
                     /locus_tag="VHN39_13355"
                     /inference="COORDINATES: protein motif:HMM:NF023010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3237 domain-containing protein"
                     /protein_id="HEX2817379.1"
                     /translation="VRGDGTTTQDVRLALRTKGGELIAMSYRGLRQGARDTLERIDRG
                     EAVDPAAYYFRIVPVFETASREHAWLNDILAVGLGYRYADGVMYSVFEVR"
BASE COUNT          317 a          553 c          609 g          224 t
ORIGIN      
        1 gtgtcaacat ggaccgagga ccggcccgcc atcactcgtg ctgtcgcttg catcttactg
       61 atccatctgc cgtcgaggct tcgggttcag gttcgggcga gcggcgattt ggggcgagtt
      121 aataggtgta aatcctgttg cccccaatcc ggctacgcac cgctttgcaa actagacgac
      181 ccgcctgacc ggcgtcttgg aggcacgccg ttccgtcacc acgtagacca acgagagcat
      241 cggcaacgcc atgcccagaa gggcgacggc ggtccatccg aagcgcgagt aggcccagcc
      301 gctcagggcg gatccgatgg cgccgccggt gaagaaagtc gccatgtaga gtccgttcaa
      361 acggcttcgg tgttcggcgg ccaaggcgta gatcgcacgc tgtccgaaga ccatgttggc
      421 tgagaccgcg gcgtcgagga tgatcgcggc caggacgacg gccccgatgg cgagatgcga
      481 tccgttccgc gccagcatcg acacggcgaa ggccgccacg accaggatca tggcggccac
      541 cgtcccgtgg cgggtcaggc cgcggtcgat aaggcggctc gcaagcggtg gcgccagggc
      601 gcccgccacg ccggccagtg cgatccaggc gacgccaccc tggctaaggc cgaactgtcg
      661 accgctgagc cataggggcg cggctgtcca gaaggcgctg aaggaggcga acaggcaggc
      721 atggtaaagc gcccggcgcc gcagcagttc ggtgctgaag aaaatcgcgc ccatcgagcg
      781 gagcaaggtc gggtaggtca gacccggcgc gggaagccgt ttcggcagca ccaggcgcag
      841 gaccagcgcc agcaccgtca tgaggattgc cgagatccgg aacatgactc gccagctcca
      901 gaggtctgcg accaggctgg acaggggccg ggccagcatg atgccgaaca tgatcccgct
      961 gacgacggtg gccacggcgc gtccgcgatc ggcctcaggc accagatagg tgacgtaggg
     1021 aaggaggacc tggaccacgg cggcggtcag cccgacgagg aaggccaggc ccaggaaggt
     1081 gaccggccgg gccgcgaagc tgagcacaag caggcagacc agctcgagca gcagcagcgt
     1141 cagcaccagc cggcggttct cgaggagatc cgccagcggg acgatcagta gcagggacag
     1201 gccatagccg gcttgcggca gggtgacgat caggccccgc gccgcggccg gaagcccaag
     1261 cgccgcgccg atcgggccgg tcagcggctg ggcgtagacg aggttggcga ccgtaacgcc
     1321 acaggctacg gccaggagcc agggcgccca ggccagcggc gcgatcgcgg gtggcggggt
     1381 cggatccgcc gggtcgacag catctgccag gaccgcggtc atcggacttc gaagacgctg
     1441 tacatgacgc cgtcggcgta tcggtagccc agcccgaccg cgaggatatc gttcagccag
     1501 gcgtgttcgc gcgacgcggt ctcgaagacc gggacaatgc ggaagtagta ggcggccggg
     1561 tcgaccgctt cgccgcggtc gatccgctcc agggtgtcgc gggcgccctg gcgcaggccc
     1621 cggtagctca tggcgatcag ctctccgccc ttcgtcctca gcgccaggcg gacgtcctgg
     1681 gtcgtcgtcc cgtcgccccg gac
//
LOCUS       DATAJL010000700         1864 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38449,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000700 DATAJL010000000
VERSION     DATAJL010000700.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38449"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..225)
                     /locus_tag="VHN39_13360"
     CDS             complement(<1..225)
                     /locus_tag="VHN39_13360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817380.1"
                     /translation="MGTMNLQLSVGDRAPEVLGATASGRFYSLDSQAGRPALIVPLGT
                     LEPDAAGRLFERLCGLQPQLAAAGVDLIPLA"
     gene            complement(292..>1864)
                     /locus_tag="VHN39_13365"
     CDS             complement(292..>1864)
                     /locus_tag="VHN39_13365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEX2817381.1"
                     /translation="IVGSLGDQEVITSPADDLAFFEATVKGLKADAVSAALKSAFEGQ
                     GPLVFMSSPKPVQGAETAILSEYASTLKVAVAAPAAPHQVAWPYSTFGEPGKVVETKE
                     VTDLDTVFVRFENGVRLTIKPTKFRDDELLVRVNVGEGLQDLPKDRQSLAWFGNVFIE
                     GGFKQIDNEDTERVLASKVYGARFNVGEDAFVLSGSTRTADLPSEMQVLTAYVSDPGW
                     RSEAFSRQQNAGKTVHDQMEGTDGGVIGRELSGLLHAGDRRFTFPSRDEIARAQLSDL
                     QAQIAPHLASDPIEVVIVGDITVDKAIEAVARTFGSLPARHAAQPVAPAQRAVGFPAA
                     NTQPLLLTHKGRADQAIGYVAWPTTDLWANPQQALETDILGEVMDLRLIDELREAQGV
                     TYSPSVSYAHSLTWTGWGYLAASVEVPPAKLDGFFRDVAKIANDLRTKEITPDELDRA
                     KKPRIDKIEKSKLTNQYWLGELSGAQADPRRLDFIRHIVPGTEKVTIADVRHAAQLVL
                     KDDKAYRLEVEPQGK"
BASE COUNT          281 a          594 c          679 g          310 t
ORIGIN      
        1 ggccagcggg atcagatcga cgcccgcagc ggcaagctgc ggctggagcc cacagagccg
       61 ctcgaacagg cggccggcgg cgtctggctc aagggtcccc aaggggacga tcagcgcggg
      121 ccggccggcc tggctgtcca gcgaatagaa gcgtccagac gccgtggcgc cgaggacttc
      181 cggcgcgcgg tcgccgactg aaagctgcaa gttcatcgtt cccatgcccg gagactccag
      241 gatcatggtg aacgagggct tacgatcgcg gcatttggtt cgctgcggcg atcactttcc
      301 ttgcggttcg acctcgagcc ggtaggcttt gtcatccttc aggacgagtt gggccgcgtg
      361 ccggacgtcg gcgatggtga ccttctccgt ccctgggacg atatggcgga tgaagtcgag
      421 ccggcgcggg tcggcctggg ccccggaaag ctcgcccagc cagtactggt tggtgagctt
      481 ggacttctcg atcttgtcga tgcgcggctt cttggcgcgg tccagttcgt ccggcgtgat
      541 ctccttggtg cgcaggtcat tggcgatctt ggccacgtcg cggaagaagc cgtcgagctt
      601 ggccggcggc acctcgacgc tggcggcaag atacccccag ccggtccagg tcaggctgtg
      661 ggcgtagctc accgagggcg agtaggtgac gccctgggcc tcgcgcagct cgtcgatcag
      721 ccgcaggtcc atgacctcgc ccaggatgtc ggtctccagc gcctgctgcg gattagccca
      781 gaggtccgtg gtgggccagg cgacgtagcc gatggcctga tcggcgcggc ccttgtgggt
      841 gaggagcagc ggctgggtgt tggccgcggg gaagccgaca gcgcgctggg ccggcgcgac
      901 cggctgggcc gcatggcggg ctgggagcga gccgaaggtg cgcgccaccg cctcgatcgc
      961 cttgtcgacg gtgatgtcgc cgacgatgac cacctcgatg ggatcggacg ccaggtgcgg
     1021 ggcgatctgg gcctgcaggt ccgagagctg ggccctggcg atctcatcgc ggctggggaa
     1081 ggtgaaacgg cggtcgccgg catgcagcag gcccgagagc tcgcggccga tcaccccgcc
     1141 gtcggtgccc tccatctggt cgtggacggt cttgccggcg ttctgctggc gactgaaggc
     1201 ctcgctgcgc cagcccggat cggacacgta ggcggtgagc acctgcatct cggacggcag
     1261 gtcggcggtg cgggtggagc ccgacagcac gaaggcgtcc tccccgacat tgaaccgcgc
     1321 gccatagacc ttcgaggcga ggacccgctc ggtgtcctca ttgtcgatct gcttgaagcc
     1381 gccctcaatg aagacattgc caaaccaggc caggctctga cggtccttgg gcaggtcctg
     1441 cagcccctcg ccgacattga cgcggaccag cagctcgtcg tcgcggaact tggtgggctt
     1501 gatggtcagg cgcacgccgt tctcgaagcg cacgaagacg gtgtcgaggt cggtgacctc
     1561 cttggtctcg accaccttgc ccggctcgcc gaaggtcgaa tagggccagg cgacctggtg
     1621 cggcgcggcc ggcgcggcca cggcgacctt cagggtggag gcgtattccg aaaggatcgc
     1681 cgtctccgcg ccctgcacgg gcttgggcga tgacatgaag accagcgggc cctggccctc
     1741 gaaggcggac ttgagggcgg cggagaccgc gtcagccttg aggcccttca cggtggcctc
     1801 gaagaaggcg aggtcgtcgg cggggctggt gatcacctcc tggtcgccca gcgagcccac
     1861 gatc
//
LOCUS       DATAJL010000701         1765 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_12422,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000701 DATAJL010000000
VERSION     DATAJL010000701.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12422"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1190)
                     /locus_tag="VHN39_13370"
     CDS             complement(<1..1190)
                     /locus_tag="VHN39_13370"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEX2817382.1"
                     /translation="MGDDDLTRDDSDAPAPELEGARDPNAVDMFGETVRPTLSDDASA
                     AYTVIARKYRPKTFDDLYGQEAMVRTLKNAFASGRIAHAFMLTGVRGVGKTTTARLLA
                     RALNYESETIHEPTLDLAVEGIHCKSIIEGRHMDVLELDAASRTKVDEMRELLDGVRY
                     APTSARYKVYIIDEVHMLSTQSFNALLKTLEEPPPHAKFIFATTEIRKVPVTILSRTQ
                     RFDLRRVEPDVIVKNLEMISEAEGARVEADGLMLIARAAEGSVRDAQSMLDQAIVQAE
                     PGQTVTAATIRDMLGLADRAQTISLFEQVMRGEAGPAIETFRTLYGYEANPDQVMLDL
                     LDHCHGASVAKAVGPAALIMPKDQAQRLAAVGAAVSAGTLSRLWQLTLKAYGEVRQAP
                     DAAAA"
     gene            complement(1252..1350)
                     /gene="ffs"
                     /locus_tag="VHN39_13375"
     ncRNA           complement(1252..1350)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VHN39_13375"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            1551..>1765
                     /locus_tag="VHN39_13380"
     CDS             1551..>1765
                     /locus_tag="VHN39_13380"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123317.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEX2817383.1"
                     /translation="MDLQILPGAKTPGSESDIDRLAINTLRTLAIDAVEKAQSGHAGA
                     PMGLAPVGYELWTRVLRYDPKTPDWPDR"
BASE COUNT          263 a          630 c          587 g          285 t
ORIGIN      
        1 gccgccgcgg cgtccggcgc ctggcggact tcgccatagg ccttcagcgt cagttgccag
       61 agcctggaca gcgtcccggc cgagaccgcc gcccccaccg ccgccagccg ctgcgcctgg
      121 tcctttggca tgatgagagc ggccggcccc acggccttgg cgaccgaggc cccatggcag
      181 tggtccagca aatccagcat cacctggtcg gggttcgcct cgtagccata aagcgttcgg
      241 aacgtctcga tcgccggccc cgcctcgcca cgcatcacct gctcaaagag cgagatcgtc
      301 tgggcccggt cggccagccc cagcatgtcg cggatcgtcg ccgcggtgac cgtctggccg
      361 ggctcggcct ggacgatggc ctggtcgagc atcgactggg cgtcacgtac actcccctcg
      421 gcggcccgcg cgatcagcat cagcccgtcg gcctcgaccc gcgcgccctc ggcctctgag
      481 atcatctcca ggttcttgac gatgacgtcc ggctcgacgc ggcgcaggtc gaaccgctgg
      541 gtccgcgaca ggatggtcac cggcaccttg cggatctcgg tggtggcgaa gatgaacttg
      601 gcgtgcggcg gcggctcctc cagcgtcttc aatagggcgt tgaacgactg ggtcgagagc
      661 atgtgcactt cgtcgatgat gtagaccttg tagcgcgccg acgtcggggc atagcgcacc
      721 ccgtccaaga gctcgcgcat ctcgtccacc ttggtccgcg aggccgcgtc gagctccagc
      781 acatccatgt gccgcccctc gatgatcgac ttgcagtgga tgccctccac cgccaggtcc
      841 agcgtcggct cgtggatcgt ctcgctctcg tagttcagag cgcgggccag cagccgtgcg
      901 gtcgtggtct tcccgacacc gcgcacgccc gtcagcatga aggcgtgcgc gatgcggcca
      961 ctggcgaagg cgttcttcag cgtccgcacc atggcctcct ggccatagag gtcgtcgaag
     1021 gtcttcggcc gatacttccg cgcaatgacc gtataggccg ccgaggcgtc gtcgctcagg
     1081 gtcggccgca ccgtctcgcc aaacatgtcc acggcattgg ggtcacgcgc cccctcaagc
     1141 tcaggggccg gagcgtcaga atcgtcgcgc gtgaggtcgt cgtcgcccat agcctcatct
     1201 aggcccgccc agccgaaagt ggaaagcccg cggcgcgtct aagctgggga aaggtggaga
     1261 ccgaacggcg acccggaacg gaattcgttg tggctgctgc cttccggccc tgaccaggtt
     1321 ggcgaagcgt ccgcccgccg ccgatctccg cgcggggata tggcggatga gcggcgcgga
     1381 ggcaaggggc ggctgcggtc gcgacgcccg tttcgccctc ggcggtcggc ctcccatctg
     1441 aacgacggga acctcggcgc gcgcgcgccc gttgctcgat gagcccccga tggcgtcccg
     1501 gctgcgtgtg cggtcgccgg gcgcctggcc tgccgaaagc gcccgtgacc atggacctgc
     1561 agattctccc cggggcgaag acgcccggct ccgaaagcga catcgaccgc ctggcgatca
     1621 acacccttcg caccctggcc atcgatgccg tggaaaaggc ccagtccggc cacgccggcg
     1681 cgcccatggg cctggcgccg gtgggttatg agctttggac ccgggtcctg cgctacgatc
     1741 cgaagacgcc ggactggccg gaccg
//
LOCUS       DATAJL010000702         4659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51206,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000702 DATAJL010000000
VERSION     DATAJL010000702.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4659
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51206"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            478..1038
                     /locus_tag="VHN39_13385"
     CDS             478..1038
                     /locus_tag="VHN39_13385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEX2817384.1"
                     /translation="MQVLSRPPSGAPALVLNADFRPLSYYPLSLWPWQDVIKAVFLER
                     VDVVSTYDQVVHSPSFEMKLPSVVSLKQYVTQDRPPAFTRFNLFLRDAFTCQYCRASE
                     DLTFDHVIPRSRGGRTTWENIVTACARCNLTKGGRTPREAHMHPLHSPHRPTAFELQQ
                     HGRRFPPHHLHESWLDYLYWDIELEA"
     gene            1227..2342
                     /locus_tag="VHN39_13390"
     CDS             1227..2342
                     /locus_tag="VHN39_13390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2817385.1"
                     /translation="MARVELSQVCKSFGAATILRDIDLTIADGEFVVFVGPSGCGKST
                     LLRIIAGLEAPSQGEIRLDGQVANDASPSERGVAMVFQSYALYPHMTVFENMAFALKL
                     AKAPRKAIEEAVRSAAATLDIEALLDRRPKALSGGQRQRVAIGRAIVRKPRVFLFDEP
                     LSNLDAALRVHMRYEFAKLHEDLKTTMIYVTHDQVEAMTLADRIVVLSEGRIVQVGAP
                     LDLYQRPDNLFVAGFIGSPKINLLSAEVVAAGATEAAVRLMSGDVIRVEVDASRARPG
                     ERVTLGVRPEHFEAGAGANALTATVRFVESLGSTSYAYGVLAGSQEELTVQLSADAAV
                     RAGQALRLGVRPDTALLFDPSGQAYQRPPAGGQSQAA"
     gene            complement(2358..3737)
                     /locus_tag="VHN39_13395"
     CDS             complement(2358..3737)
                     /locus_tag="VHN39_13395"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006270946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008422 - beta-glucosidase activity
                     [Evidence IEA];
                     GO_process: GO:0030245 - cellulose catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GH1 family beta-glucosidase"
                     /protein_id="HEX2817386.1"
                     /translation="MTAEKTFPAGFLWGSATAAYQVEGSSTVDGAGMSIWDRFAHTPG
                     LIANGDTGDVACDQYRLYRQDVALMRELGLKAYRFSTSWSRVLPQGRGAVNPAGLDYY
                     DRLVDTLLENGVEPLVTLYHWDLPAALDDRGGWLNPEIADWFADYASLMYRKLDGRVK
                     TWATLNEPWVVTDGGYLHGALAPGHKNRFEAPIASHQLMRAHGAAVKTYRAEGKHRIG
                     LVVNLEPKYPASQAPEDLAAVARADAYMNRQYLDPVFLGRYPEEMSEIFGEAWPNWPA
                     EDYALIAQPIDWLGVNYYTRNVTRHEPANWPLKAAAVRQPQATYTETGWEVFPQGLTD
                     ILVWVKDRYGDIPIAVTENGAAFFDPPAAEGGRVQDPLRVSYLRKHLLAVHDAIAQGV
                     KVEGYMVWSLLDNLEWSLGFSKRFGIVHVNFATQERTPKDSARYYAQVVASNGASLAG
                     ETVAGSDRS"
     gene            3914..>4659
                     /locus_tag="VHN39_13400"
     CDS             3914..>4659
                     /locus_tag="VHN39_13400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018082499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000976 - transcription cis-regulatory
                     region binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEX2817387.1"
                     /translation="MSRRLQPAGRAPDPSSGGVGVSRPVTIRDVAREAGVSVASASRS
                     LNGLANVTEATRRRVLGAAAQLRYVPHTGARTLSTRRTDTIGVMLPDLHGEFFSEIIR
                     GADLAARERGLHLLVSTSHGDAAEAAAAMRAMRGRVDGLLLMSPHVDALLLADNLADD
                     LPTVLINTPVEGGSRASFCVDNYSGAVAVVRHLAEGGGDVAHIAGPADNFESQERLRG
                     YVDALGGVAGLVLQGDFTEESGHRAGMQLAG"
BASE COUNT          720 a         1571 c         1555 g          813 t
ORIGIN      
        1 tctatgcatc gttcagatag atgctatcta agcatcgtcc acatcggaca gggcgaccag
       61 gacaccggcg ccccactcaa aaaggaacta agtcatgtcg atccaaatga accgcatcct
      121 cgacgtcctc gcctccttcg ccatcgtcgc gatgggcctg acgctcgccg gcgccaccgc
      181 tattgtcggc gtctgagacc agatgcgacg cccataagcc tcgcccacgt gacccacgtg
      241 cggcgaggcc cggtgaaccg cttctgcgtc ccccatcttg tgcgtcatgg agatgtctcc
      301 gaatctttcc tatagtggtc cccactgcgg gacagcccga cctaactgaa cgggcccgtc
      361 gccgcattca tgcgtcgcga acaggggcct aagtcttcag ttcatcagcg tcattctcaa
      421 gcgcccagcg ccatcagccc tgcgatcggg cggcctccgc ttttggggag gcccgccatg
      481 caagtgctta gccgcccacc ctccggcgcg cccgccctgg tgttgaacgc cgatttccgg
      541 cccctcagct attatccgct gtcgctctgg ccctggcagg acgtcatcaa ggcggtcttc
      601 ctggagcgcg tcgacgtggt ctccacctac gaccaggtgg tgcactcccc gtctttcgag
      661 atgaagctgc cgagcgtcgt gtcgctgaag cagtatgtga cccaggaccg gccgccggcc
      721 ttcacccggt tcaacctctt cctgcgcgac gccttcacct gccagtactg ccgcgcatcc
      781 gaggacctga ccttcgacca tgtgatcccg cgctcgcggg gcggacgcac gacctgggag
      841 aacatcgtca ccgcctgcgc gcgctgcaat ctgaccaagg gcggccgcac gccgcgcgag
      901 gcgcacatgc acccgctgca cagtccgcat cgccccacgg cgttcgaact gcagcagcac
      961 ggccgccgct tcccgccgca ccacctgcac gaaagctggc tcgactacct ctactgggac
     1021 atcgagctgg aggcgtaggt gctcacacag cgccttcggt gttagcgcgg cattgaaaag
     1081 aataagaaac gagtactgcc cgggtctgcc ggagttgtgg ccaagacctt cagctggtca
     1141 tcacagggaa tccgaaaacg ggtggctcca aggccgcacc atccatatgg cttgcgccac
     1201 gaggggagtt ttgatctggt cggacgatgg cgcgggtcga gctgtcgcaa gtgtgcaagt
     1261 ccttcggcgc cgcgacgatc ctgcgagaca tcgacctgac gatcgccgat ggcgagttcg
     1321 tggttttcgt cggcccgtcc gggtgcggta agtccaccct gttgcggatc atcgccgggc
     1381 ttgaggcccc ctcgcagggc gagatccggc tcgatggcca agtcgcgaat gacgcctccc
     1441 cgtccgagcg cggggtcgcg atggtgttcc agtcgtacgc gctgtatccg cacatgacgg
     1501 ttttcgagaa catggcgttc gccctgaagc tcgccaaggc gccgcgcaag gcgatcgagg
     1561 aggcggtgcg ttcggcggcc gcgaccctcg atatcgaagc actcctcgac cgacgcccga
     1621 aggcgctgtc cggcggtcag cggcaacggg tggcgatcgg ccgggccatc gtgcgcaagc
     1681 cgcgggtgtt cctgttcgac gagccgctgt cgaacctcga cgccgccctg cgcgtgcaca
     1741 tgcgctacga gttcgccaag ctgcacgaag acctcaagac gacgatgatc tacgtcaccc
     1801 acgatcaggt cgaagccatg acgctcgccg accgcatcgt cgtgttgtcg gaggggcgga
     1861 tcgtgcaggt gggcgcgccg ctcgatctct accagcggcc ggacaacctg ttcgtggccg
     1921 ggttcatcgg atcgccgaag atcaacctgc tgagcgccga ggtggtcgcg gctggagcga
     1981 cggaagccgc agtgcgcctg atgtccggcg acgtgatccg ggtcgaggtc gacgcctccc
     2041 gggcgcggcc cggggagcgc gtcacgctgg gcgtgaggcc cgagcatttc gaggcgggcg
     2101 ccggggccaa tgcgctcacc gcgacggtcc ggttcgtgga atcgctgggg tccacctcct
     2161 acgcctatgg ggtgcttgcg ggctcgcagg aggagctcac ggtccagctt tcggcggacg
     2221 ccgcggtccg ggctggtcag gcccttcggc tgggcgtgcg gccggatacg gccctgctct
     2281 tcgacccgtc gggtcaggcc tatcagcgac cgcccgcggg cggacaaagc caggcggctt
     2341 aggcttcgcg ccctgcgtca ggatcggtcg gagccggcga cggtctcgcc cgcgaggctg
     2401 gcgccgttgc tggccacgac ctgcgcgtag tagcgcgcgc tgtccttggg cgtgcgctcc
     2461 tgagtcgcga agttcacgtg gacgatgccg aaccgcttcg agaagcccag cgaccactcg
     2521 aggttgtcga gcagcgacca gaccatgtag ccctccacct tcacgccctg ggcgatggcg
     2581 tcgtgcacgg cgagcaggtg tttgcgcaga tagcttaccc gcagcggatc ctgcacccgt
     2641 ccgccttcgg ccgccggcgg atcgaagaag gccgcaccgt tctcggtgac cgcgatcggg
     2701 atgtctccgt aacggtcctt cacccagacc aggatatcgg tcaggccctg ggggaacacc
     2761 tcccagccgg tctcggtata ggtcgcctgc ggctggcgca cggctgcggc cttcagcggc
     2821 cagttcgccg gttcgtggcg ggtgacgttg cgggtgtagt agttgacccc caaccagtcg
     2881 atcggctggg cgatcagggc gtagtcttcc gccggccagt tcggccaagc ctcgccgaag
     2941 atctcgctca tctcctcggg atatcggccc aggaacaccg ggtcgaggta ctggcggttc
     3001 atgtaggcgt cggcgcgggc cacggcggcg agatcctccg gcgcctgcga ggcggggtat
     3061 ttcggctcaa ggttcaccac cagcccgatc cggtgcttgc cctcggcgcg gtaggtcttc
     3121 accgcggcgc cgtgcgcgcg cataagctgg tgcgaggcga tcggcgcctc gaagcggttc
     3181 ttgtggccgg gcgcgagcgc gccgtgcaga tagccgccgt cggtgaccac ccacggctcg
     3241 ttcaatgtcg cccaggtctt cacccggcca tccagcttgc ggtacatcag gctcgcgtag
     3301 tcggcgaacc agtccgcgat ctccggattt agccaaccgc cacggtcgtc gagcgcggcc
     3361 ggcaggtccc agtggtagag cgtcaccagc ggttcgacgc cgttctcaag cagggtgtcc
     3421 acaagccgat cgtagtagtc gaggcctgcg gggttcacgg ccccccttcc ctgcggcagg
     3481 acgcggctcc aggaggtgct gaaccgatag gctttgaggc cgagctcacg catcagggcg
     3541 acgtcctggc gatagaggcg atactggtcg caggccacgt ccccggtgtc gccgttggcg
     3601 atcaggcccg gggtgtgggc gaagcggtcc cagatgctca ttcccgcgcc gtcgacggtc
     3661 gaggagccct cgacctgata ggcggctgtc gcggagcccc agaggaatcc ggctgggaag
     3721 gttttctcgg cagtcatggg tcttgcggct ccctggacgg tcttcgggcc tgctgacgga
     3781 cgcgtcaagg tccgctttac accttcatgg aaccggttac attgcatcta ttgcattatt
     3841 gaaattcgtt gcgcaggcgg attgcaacgg tcgccgacag agcggccgag ctgactcgcc
     3901 ggggaggcca ggagtgtcga ggcggctgca gcctgccggg cgtgcgcctg acccgtcgtc
     3961 gggtggcgtg ggcgtatcgc gaccggtgac catccgcgac gtggcccgcg aggccggggt
     4021 ctcggtcgcg tcagcctcac gatccctgaa cggcttggcc aatgtcacgg aagccacccg
     4081 ccgccgggtg ctgggcgctg ctgcgcagct gcgttacgtc ccccacaccg gcgcccggac
     4141 cctgagcacc cggcgcaccg acaccatcgg ggtgatgctg cccgacctgc acggggaatt
     4201 cttctcggag atcatccgcg gcgcagacct ggcggcgcgg gagcgcggcc ttcatctgct
     4261 ggtttcgacc tctcacgggg acgcggccga ggcggccgct gcgatgcggg ccatgcgtgg
     4321 ccgggtcgat ggactgctgc tcatgtcgcc gcatgtggac gcgctcctgc tggccgacaa
     4381 ccttgccgac gacctgccca cggtgctgat caacaccccc gtcgagggcg gatcgcgggc
     4441 gtccttctgc gtcgataact attctggcgc cgtggcggtg gtgcgccacc tggccgaggg
     4501 cggcggcgat gtcgcccaca tcgccggacc ggcggacaat ttcgaatccc aggagcgcct
     4561 gcgcggctac gtcgatgccc tgggcggagt cgccggcctc gtgctgcagg gcgacttcac
     4621 cgaggagtcc ggtcaccggg ccgggatgca gctggcagg
//
LOCUS       DATAJL010000703         2293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62428,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000703 DATAJL010000000
VERSION     DATAJL010000703.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62428"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1518)
                     /locus_tag="VHN39_13405"
     CDS             complement(<1..1518)
                     /locus_tag="VHN39_13405"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: protein motif:HMM:NF025114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2817388.1"
                     /translation="MADAELDSALEAAHLPALLAALVHMTGDPGWLRPEWTPVYAPLS
                     RGETGLAEEVQAEIRSLAKAAIEPYLAGGSPKMPSPDTPTLRRMMDFVGGAPIPETYA
                     DFLIDELAISGVSSKDPQFEQPRLKAAARQLKTLVIGAGMSGLLAGIRLSQAGVPFEI
                     VESNADVGGTWLVNTYPGCRVDNSNHMYSYSFEPNHAWPQHFSPQPELLKYFRGVTAK
                     YHLKDHIRFETKVESLTWDEARSVWRVELKGKDGKSETVEANAVITAVGQLNKPRIPQ
                     IEGVGTFEGPAFHSAEWRHDVDLTDKRIAVIGTGASAYQFVPEIAPKVASLKVFQRSP
                     PWGLPVPHYHEDVPEGMKWLLDHIPYYDKWYRFWLFWTTTEGFLPMVKADPGWNGPST
                     AVGAENLMLREMAAAALAAQVEDRPDLLPNVVPTYPLGGKRAVLDNGVWLGALKRPNV
                     ELITQAITKITPKGVVTADGVEHEVDVLIYGTGFTASKFLSGLKVTGRGGKDLHDA"
     gene            complement(1606..>2293)
                     /locus_tag="VHN39_13410"
     CDS             complement(1606..>2293)
                     /locus_tag="VHN39_13410"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2817389.1"
                     /translation="ASGLVVATKAGTFAEGRAIRRDFSPAAIVASAERSLRNLGLDVL
                     PLLQLHGPSAGEITDELRGALQGLRARGLVRALGVNSFDPAVIDHAIGLPDFDVVMVD
                     YNVLRLDREPLIARAAAAGKGVLAGMPLAMGHTGLQVAKLRAPRDLWYAARGLMRHRR
                     EMANGARFGFLHRQAAMTGSQAALAFVLANPDVACAVVGTTRMAHLTEDLAASGIALP
                     QDLMARIRAT"
BASE COUNT          335 a          790 c          796 g          372 t
ORIGIN      
        1 ggcatcgtgc aggtccttgc cgccccgccc tgtgaccttc agccctgaaa ggaatttcga
       61 ggccgtgaag ccggtgccgt agatcaggac atcgacctcg tgctcgacgc cgtcggcggt
      121 gacgaccccc ttcggcgtga tcttcgtgat cgcctgggtg atcagctcga cgttcggccg
      181 tttcagcgcg cccagccaca cgccgttgtc gagcaccgcg cgcttgccgc cgaggggata
      241 ggtcggcacg acgttgggca gcaggtccgg ccggtcctcg acctgggcgg ccagcgccgc
      301 ggcggccatc tcgcgcagca tcaggttttc ggcgcccacc gcggtcgatg ggccgttcca
      361 gccgggatcg gccttgacca tcggcaggaa cccctcggtg gtcgtccaga acaaccagaa
      421 gcggtaccac ttgtcgtagt aggggatgtg gtccagcagc cacttcatcc cttccgggac
      481 gtcctcgtgg tagtgcggca cgggcaggcc ccaaggtgga ctgcgctgga agaccttcag
      541 gctcgccacc ttcggcgcga tctccggcac gaactgatag gccgaggcgc cggtgccgat
      601 caccgcgatc cgcttgtcgg tcaggtccac gtcgtggcgc cattcggcgg agtggaaggc
      661 cgggccttca aaggtcccga cgccctcgat ctgcgggatc cgcggcttgt tgagctgacc
      721 caccgcggtg atcacggcgt tggcctcgac cgtctcgctc ttgccgtcct tgcccttcag
      781 ctcaacgcgc cagacggacc gggcctcgtc ccaggtcagg ctctcgactt tggtctcgaa
      841 gcgaatgtgg tccttcaggt ggtacttggc cgtcacgccg cggaagtatt tcaacagctc
      901 cggctggggc gagaagtgct gcggccaggc gtggttcggc tcgaaggagt agctgtacat
      961 gtggttcgag ttgtccaccc gacagcccgg ataggtattc accagccagg tgccgcccac
     1021 gtcggcattg gactccacga tctcgaacgg cacgccggcc tgcgaaaggc ggatgccggc
     1081 caggaggccc gacatgcccg cgccgatgac cagcgtcttc agctggcgcg cggcagcctt
     1141 cagccgcggt tgttcgaact gcgggtcctt ggacgacaca ccggagatcg ccagctcgtc
     1201 gatcagaaag tccgcatagg tctccgggat cggcgcgccg ccgacgaagt ccatcatccg
     1261 gcgcagggtg ggcgtgtcgg ggctcggcat cttcggcgag ccgccggcca gatagggctc
     1321 gatcgcggcc ttggccaggc tgcggatttc ggcctgcacc tcttcggcga ggcccgtctc
     1381 gccccgcgac agcggcgcat agaccggcgt ccactcaggc ctcagccagc cggggtcgcc
     1441 ggtcatgtgc accagggccg ccagcagagc cggcaggtgg gcggcctcaa gggcgctgtc
     1501 gagctcggcg tcggccatgg tcgtttcccg ccagattatc gttgttcggc accatgactc
     1561 cgcgcggcgg cggctgtcat ccctgacttg gcgtcaggtg gggcgtcagg tcgcgcggat
     1621 ccgggccatc aggtcctgcg gcagggcaat gccggaggcg gccaggtctt cggtcagatg
     1681 ggccatgcgg gtcgtcccga cgaccgcgca ggcgacgtcg gggttggcga gcacgaacgc
     1741 gagcgcggcc tggctgccgg tcatcgccgc ttgccggtgc aggaacccga agcgcgcgcc
     1801 gttggccatc tcgcgccgat gccgcatcag gccacgcgcg gcgtaccaga ggtcacgggg
     1861 cgcacggagc ttggcgacct gcagcccggt gtggcccatg gcgagcggca tgccggccag
     1921 cacgcccttc ccggccgccg ccgcgcgggc gatcagcggc tcgcggtcca gccgcaggac
     1981 attgtagtcg accatcacca cgtcgaagtc cggcaggccg atggcgtggt cgatcaccgc
     2041 cgggtcgaag ctgttcaccc caagggcgcg caccagcccc ctcgccctca ggccctgcag
     2101 cgctccgcgc agctcatcgg tgatctcgcc ggccgacgga ccgtggagtt gcagcagcgg
     2161 caggacatcg aggcccaggt tgcgcaggct gcgctcggcg ctggccacga tggcggcggg
     2221 cgagaaatcc cgccggatgg cccggccttc cgcgaaggtc ccggccttgg tggcgaccac
     2281 caggccggac gcg
//
LOCUS       DATAJL010000704         8303 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69414,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000704 DATAJL010000000
VERSION     DATAJL010000704.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8303
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69414"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..3128)
                     /locus_tag="VHN39_13415"
     CDS             complement(<1..3128)
                     /locus_tag="VHN39_13415"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2817390.1"
                     /translation="MWLVRAALRRPIMILVLVLSLALGSVLAISRSKIDIFPDLNSPV
                     IYVAQPYGGMSPQQIEGFLSYYYEYHFLYINGIETVEAKSIQGAALLRLNFHAGTNMS
                     EALAETISYVNRARAFMPPGTVSPFVVRYDAGTLPVGYLVFTSPTKTLGEIQDAALNK
                     VRPQFATLPGVSSPPPFGGNQRSILVNVDPNKLRGYGLTADDVLQALVSGNSIQPAGV
                     ANIGTLQTLVTTDSTVTNTSALLDIPVRDGVNAAVYLRDVATVADGADIPAGYALING
                     KRTVYIPVTKRPDASTIAVVNDVRKNLPRFQALLPDDITVNYQFDQSRYVTDALWSVV
                     REAVLGALLVGLMLLLFLRDWRSSLIVVVVIPFALLAAVVALWAAGQTINIMTLGGLA
                     LAVGVLVDDGTVLLENIHVHMTRGVSVARAVVDASGEVAIPRLVAMSCILAVFIPSFF
                     MAGPARALFVPLSLAVGFSIGAAYLLFSTMIPILSVWFLKPGGHAVVAPGHGLQPAAN
                     DGDGGRFARFRGRFIKAQDGVARRRTGVLAIYAIGAPLLLILLTIFIRTEIFPSAAAN
                     QIRLRMDAPEGTRIAVTEAMAQQVLQTVKKEAGPDAVDITLSYVGTQGSSYPINLVFL
                     WTGGPHEAVMNISLKPGSGVSVRRLTERLRGVLPAQFPGTQFSFEPGDLVSQILNFGT
                     SAIVDIAVTGPTYGDVEQFAGKLRKELNGAQGIADLKFGQSLHYPNVDVRINRVVAGQ
                     LGTTADKVGRAVVAATASTRFVTPNYWRDPKSGISYQVQVQAPQAAMTSLPAISAIPV
                     AGPNGTDLLLSQVADLRQQTVPGELDRRNGQWLISVTANLTGPDLGRAAKSIDAAIAR
                     AGTPPKGVTVDVRGQVSVMRQIFSYLSVGLALSILVMLLLLTAYFQSLRLSLIALSTV
                     PAVLLGSMLFLFLTVTSLNLESFMGMIMVIGVALANAILLVTFAERNRAAGQSSFDAA
                     RNAASERLRPVLMTSLAMIAGMAPMALAIGAGAEETAPLGRAVIGGLIAATAATLFLL
                     PGVFGLVQRKAPL"
     gene            complement(3146..4522)
                     /locus_tag="VHN39_13420"
     CDS             complement(3146..4522)
                     /locus_tag="VHN39_13420"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2817391.1"
                     /translation="MAVLVLMLSGVAVAQPTTGVQPTARLSLADALDYASVNYPSVKA
                     ALEQKTAADRDVDVARAAYLPQVNLLYQINKSTVNNFTGLLLPQSVIPSISGPVLGES
                     GKSVWNSGDGVLATWRPFDFGYRAAKVDAAREAAAAATQSVALSRLDVLTATSNAYLN
                     LAAAQSLAKVAQANVERLQAFAGASHVLVDNKLRAGVEASQADAAEALARTTLISARN
                     NVEQQRATLAKLVNRPAAQIVIDDAQLSEAAPEIGAASARGVDTHPSALAEAARVKQQ
                     DAQLRALDRSFAPQIDLVGSASGRGGGKTTAGDYRGGDAGLTPDVGNWAVGVQVTVPL
                     GSFFSLGAQEGAQRARVRAERDRYQQTLGDLTEQLAQAQSALTSAQEIAKITPVALQA
                     ARQGETQQRARFQSGLATAVDVTAAEATLAQAESQDAIARLNVWRAVAALAAARGDMS
                     PLRAAAPK"
     gene            4878..5165
                     /locus_tag="VHN39_13425"
     CDS             4878..5165
                     /locus_tag="VHN39_13425"
                     /inference="COORDINATES: protein motif:HMM:NF019042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEX2817392.1"
                     /translation="MGRPGGGGAGELCRLEQPFSAGNPAFRGSAAVDGGRQRGYTLGL
                     NWHPNDLVRLLLAYNHVDYEKANGVVVKGLALGAPVGAKLDAISLRVQVSY"
     gene            complement(5264..7006)
                     /locus_tag="VHN39_13430"
     CDS             complement(5264..7006)
                     /locus_tag="VHN39_13430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817393.1"
                     /translation="MTFRTALLSGAALGAVCVLATGGTAEAATKHRHPAAPTGPDLAQ
                     QVKDLRAQVESLQATVQAQAQAQQQTQAQVAASDGKAEAATVAAHAAQAKLDMQIEQI
                     PGAVQTAVAAQPAPTLDKLKYKNISLTLGGFAEAAGIYRSKTLESDLSSSFAKIPFEN
                     SPLSHINELRGSPRQSRVSFLAQGDINQATHAAFYGEFDFLGAAQTANSNESNSYTPR
                     IRHLYGTMDWDYWGLHMLAGQNWSLVTLNSKGITPRNEVPPPAIEAQYVPGFAWTRQP
                     QLRITKDFDDKQFWLAASLENPQSTFTGTAGNALPAGVSVTDLATGNSTINGAPAIAA
                     AFSGFNSVNTSSFNRLPDVILKAAWEPYIGVARPLHIEAFGIWRDFYDQITVTAANTQ
                     GLTPGVHEADVTGSGWGGSITYTAIPKILDLQASVMSGKGIGRYGSAQLSDATLRIDG
                     KVAPISETMYLVGATLHATPQLDLYLFGGDERENSKISTLGAANFGFGNLANTVFTAA
                     GCTTVGGACSATVRDVGQVTAGFWDKLYAGSFGQVRVGVQYSHTRLEGFAGGGYTPRT
                     SDDMVFTSFRYYPF"
     gene            complement(7337..8008)
                     /locus_tag="VHN39_13435"
     CDS             complement(7337..8008)
                     /locus_tag="VHN39_13435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817394.1"
                     /translation="MIPVWLAAVAALAAAASSEPSRPSAELPTYAVGDAFVFSDGRVE
                     QVAGIDGDVVSWKGLQGGVYQRNRNFVTPPSSWRMDQGEGRRVPSERAAAIWPLVAGR
                     SVRFTVINETRRAADRPWERNMSLWTCKVGPRHDTATPAGSFDVFTIGCELYSPVNMR
                     LLERVAWDYAPDLGHYVRRTNVDYLAARTTTIVLTSALHGRMATRERLTALATQATAT
                     TSPSR"
     gene            complement(8005..>8303)
                     /locus_tag="VHN39_13440"
     CDS             complement(8005..>8303)
                     /locus_tag="VHN39_13440"
                     /inference="COORDINATES: protein motif:HMM:NF012311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEX2817395.1"
                     /translation="TAVDRSHRPYRYANRGPYVMFAALGVDILAAGPDDMPQAVSGTS
                     FASPIVAVELARRLSGVDAVAARKAVQALASEALDLGAPGRDPIFGYGLIESRR"
BASE COUNT         1317 a         2724 c         2914 g         1348 t
ORIGIN      
        1 agcggcgcct tgcgctgcac cagtccgaag acgccgggca ggaggaacag ggtggcggcg
       61 gtcgccgcga tcaggccgcc gatgacggcg cggcccaggg gcgcggtctc ctcggcgccg
      121 gcgccgatcg cgagcgccat gggggccata cccgcgatca tggcaaggct ggtcatcaac
      181 accgggcgca gacgctccga cgccgcattg cgcgccgcgt caaaggacga ctggccggcg
      241 gcgcgattcc gctccgcgaa ggtgaccagc aggatggcgt tggcgagcgc cacgccaatc
      301 accatgatca tccccatgaa gctttccagg ttcaggctgg tcaccgtgag aaacaggaac
      361 agcatcgatc cgagcagcac cgccggcacg gtggaaagcg cgatcaggct caggcgcagc
      421 gattggaagt aggcggtcag caacagcagc atgaccagga ttgagagcgc caggcccacc
      481 gacaggtagc tgaagatctg ccgcatgacg ctgacctgac cgcgcacgtc gacggtgacg
      541 cccttcggcg gggtcccggc gcgggcgatg gccgcatcga tcgacttggc ggcccggccg
      601 aggtccggcc cagtgaggtt ggcggtgacg ctgatcagcc actggccgtt gcggcgatcg
      661 agttcgcccg ggacggtctg ctggcgcaag tcggccacct ggctgagcag caggtcggtc
      721 ccattcggtc ccgcgacggg gatcgcggag atagccggca gcgaggtcat cgccgcctgc
      781 ggcgcctgca cctgcacctg gtaactgatc cctgacttgg gatcacgcca gtagttgggg
      841 gtgacgaagc gggttgaggc cgtcgcggcg accacggcgc gtccgacctt gtccgcggtc
      901 gttcccaatt gacccgccac cactcgattt atccgcacat cgacgttcgg gtagtgcagc
      961 gactggccga acttcaggtc ggcgatgccc tgcgcgccgt tcagttcctt gcgcagcttg
     1021 ccggcgaact gctcgacgtc gccgtaggtc ggtccggtga ccgcgatatc gacgatcgcg
     1081 ctggtcccga aattcaggat ctggctgacc agatcgcccg gctcgaagga gaactgcgtc
     1141 ccggggaact gcgcgggcag tacgcccctc agccgctcgg tcagccggcg cacgctcacg
     1201 ccggatcccg gcttcagtga gatgttcatg accgcttcgt gcggcccgcc ggtccacagg
     1261 aacacgaggt tgatcggata ggacgaaccc tgcgtcccga cgtagctgag ggtgatgtcg
     1321 accgcatccg ggccggcctc cttcttgacc gtctgcagca cctgttgggc catggcctcg
     1381 gtcaccgcga tgcgcgtccc ctccggcgcg tccatgcgca ggcggatctg gttggcggcg
     1441 gccgacggaa agatctccgt gcggatgaag atcgtcagca ggatcaacag cagcggcgct
     1501 ccgatcgcat agatcgccag cacgcccgta cggcgcctgg cgaccccgtc ctgtgccttg
     1561 atgaagcggc cgcggaagcg cgcaaaccgg ccaccgtcgc catcgttggc ggcgggctgc
     1621 agaccatggc ccggcgccac gacagcgtga ccgccgggct tgaggaacca aaccgaaagg
     1681 atcgggatca tggtgctgaa gagcaggtag gccgcgccga tcgagaaccc gaccgccagc
     1741 gacagcggca cgaacagcgc ccgcgccggt ccagccatga agaacgaggg gatgaacacc
     1801 gccaggatgc acgacatggc caccaggcgc gggatcgcca cctcgccgct ggcgtctacg
     1861 accgcgcggg cgacggagac gccacgcgtc atatgcacgt ggatgttctc cagcagcacc
     1921 gtgccgtcgt cgaccagcac acccaccgcc agcgcgagac cgccgagggt catgatgttg
     1981 atggtctggc ccgccgccca caacgccacc accgccgcta gcagggcgaa gggaatgacc
     2041 accacgacga tcagcgagct tcgccagtcg cgcaggaaca gcagcagcat cagcccgacc
     2101 aagagggcgc ccagcaccgc ctcgcgcacc accgaccata gggcgtcggt gacgtagcgc
     2161 gactggtcga actggtagtt gaccgtgatg tcgtccggca gcagcgcctg gaagcgcggc
     2221 aggttcttgc gcacgtcgtt gaccaccgcg atggtcgagg cgtcgggccg cttggtgacc
     2281 gggatataga cggtgcgctt gccattgatc agcgcatagc cggccgggat gtccgcgccg
     2341 tcggcgacgg tcgccacgtc acgcagatag accgcggcgt tgaccccatc gcgcaccggg
     2401 atgtccagca gggcgctggt gttggtgacc gtggagtcgg tggtcaccag ggtctgcagc
     2461 gtccctatgt tggccacgcc ggccggctgg atgctgttgc cgctgaccag cgcttgcagc
     2521 acgtcgtcgg cggtcaggcc atagccgcgc agcttgttgg gatcgacgtt gaccaggatg
     2581 gagcgctggt tgccgccgaa cggcggcggc gaggagacgc cgggcagggt cgcgaactgc
     2641 gggcgcacct tgttgagcgc cgcatcctgg atctcgccca gggtcttggt cgggctggtg
     2701 aacaccagat agccgaccgg cagggtgccg gcgtcgtagc gcaccacgaa gggcgacacc
     2761 gtgcccggcg gcatgaaggc gcgcgcccga ttgacgtagg atatcgtctc cgccagcgcc
     2821 tcgctcatat tcgtgccggc gtggaaattg agccgaagca gggccgcgcc ctggatcgac
     2881 ttggcttcga ccgtctcgat gccgttgatg tagaggaaat ggtactcgta gtagtaggag
     2941 aggaagccct cgatctgctg cgggctcatg ccgccgtagg gctgggcgac gtagatgacc
     3001 ggcgagttga ggtcggggaa gatgtcgatc ttgctgcggc tgatcgccag caccgaaccc
     3061 agcgccagcg acagcaccag caccaggatc atgatcgggc ggcgcagggc ggcgcggacg
     3121 agccacatat cgaagtctcc cgcccctact tcggcgctgc ggcgcgcagg ggcgacatgt
     3181 cacccctggc cgccgccaag gcggccacgg cccgccatac gttcagccgc gcgatggcgt
     3241 cctggctttc ggcctgggcg agcgtcgcct cggccgcggt gacatcaacg gcggtcgcca
     3301 gcccggactg gaagcgcgcc cgctgctgcg tttcaccctg ccgcgcggcc tgaagggcga
     3361 cgggcgtgat cttggcgatc tcctgggcgc tggtcagcgc cgactgggcc tgggccagct
     3421 gttcggtgag gtcgccgagc gtctgctggt aacggtcgcg ctcagcccgc acgcgggcgc
     3481 gctgcgcgcc ttcctgcgcg ccgaggctga agaagctccc cagcggcacg gtcacctgga
     3541 cacccaccgc ccagttgccg acatcgggcg tcaggccggc gtcgccgccg cgatagtcgc
     3601 ccgccgtggt cttgccgccg ccgcgcccgg acgcgctgcc gacgaggtcg atctgcgggg
     3661 cgaaggaccg gtcgagggcg cgcagctgcg cgtcctgctg tttgacgcgc gccgcttccg
     3721 caagcgccga gggatgcgtg tcgacgccgc gcgccgacgc cgcgccgatt tcgggcgccg
     3781 cctcgctcaa ttgggcgtcg tcgatgacaa tctgggccgc ggggcgattg accagtttcg
     3841 ccagcgtcgc ccgttgctgc tcgacgttgt tgcgcgcgct gatcagggtg gtgcgggcga
     3901 gcgcctcggc ggcgtcggcc tggctggcct ccacgccggc gcgcagcttg ttgtcgacca
     3961 gcacgtggct ggcgccggcg aaggcctgca ggcgctcgac attggcctgg gccaccttcg
     4021 caagggactg ggcggccgcc aggttcaggt aggcgttgct ggtggccgtc aggacatcga
     4081 gccggctcag ggcgaccgat tgggtcgcag cggcggccgc ctcccgcgcg gcgtcgacct
     4141 tggcggcgcg gtagccgaag tcgaacgggc gccaggtcgc cagcacgccg tcgccgctgt
     4201 tccaaacgct cttgccgctt tcgcctagga cgggaccgga gatcgacggg atcaccgatt
     4261 gcggcagcag cagtccggtg aagttgttca ccgtggactt gttgatttgg tagagcaggt
     4321 tgacttgcgg caggtacgcg gcgcgggcga catcgacgtc tcggtccgcg gcagtcttct
     4381 gttccagcgc agctttcacg gacgggtagt tgaccgaggc atagtcgagg gcgtcggcga
     4441 ggctcagtcg tgcggtgggt tggacgccgg tcgtgggttg cgccacggcg acgccggaca
     4501 gcatcagcac aaggacagcc acgcccgaaa cgccggttgt gcatcgctgt cgccaataaa
     4561 gccgccgccc cataagccct ctaccctcgc cgcgcttggc gatgaccgct cacggtttgc
     4621 ggttcggccg ccagactcat ggtttccccg ctccccaagg cttcagcatt gcatcgtcta
     4681 gcgccgttgc ccgcgtgttt cacgatagcc agcatggcgc ccgcccgtcc cggccaattt
     4741 tgcctgcccg acttcgcgga aaggcgtgcg ccatcttctc ctgcagagca tcgcccaagg
     4801 cttaaagcct actgagatgg tagaatatcc tatgcccgga tttcatcggc gcatccctta
     4861 tcgctgcgcg acggcgggtg gggcgcccgg gaggcggcgg cgcgggcgag ctatgtcgac
     4921 ttgaacagcc attttcagcc gggaaccctg ctttccgcgg atccgccgct gtcgatggcg
     4981 ggcgccagcg cggctacact ctggggctca actggcatcc caacgacctg gtgcgcctgc
     5041 tgctcgccta caatcacgtc gactacgaaa aggccaacgg cgtcgtggtg aagggactgg
     5101 cgctcggcgc cccggtcggc gcaaagctcg acgccatctc gctgcgcgtc caggtgtcct
     5161 actgagcgcg tcccgagcct gactcagtgg tcgtcggcca gcagactgtc tggtcaaccg
     5221 gcgcatcgcg accgagatgg ccgcgacgcg ccgcgcaaca tttctagaac gggtagtagc
     5281 ggaagctcgt gaagaccatg tcgtcagagg tcctgggcgt gtagccgccg cccgcgaagc
     5341 cctccagtcg cgtgtgcgag tactgcacac cgacccgcac ctgcccgaac gagccggcat
     5401 agagtttgtc ccagaagccg gcggtgacct ggccgacgtc gcggacggtc gccgagcagg
     5461 ctccgccgac cgtggtgcag ccggccgcgg tgaagacggt gttggccaga ttgccgaatc
     5521 cgaagttcgc cgcacccagg gtgctgatct tggaattctc gcgctcgtca ccgccgaaca
     5581 ggtagaggtc cagctgcggc gtggcgtgca gggtcgcgcc caccagatac atggtctcgg
     5641 aaatcggtgc gaccttgccg tcgatgcgca aggtggcgtc ggagagctgg gctgagccat
     5701 agcggccgat gcccttgccg ctcatcaccg aggcctgcag gtcgaggatc ttgggaatgg
     5761 cggtgtaggt gatgctgccg ccccagccac tgccggtgac atcggcctcg tgcacgccgg
     5821 gggtcaggcc ctgggtgttg gccgcggtga ccgtgatctg gtcgtaaaag tcgcgccaga
     5881 tgccgaaggc ttcgatatgc agcggccggg cgacgccgat gtagggttcc caggccgcct
     5941 tcaggatcac atccgggagg cggttgaagg agctggtgtt gaccgagttg aagcccgaga
     6001 atgccgccgc aatcgccggc gccccgttga tcgtcgagtt gccggtggcc aggtcggtga
     6061 cgctgacgcc ggccggcagg gcgttcccgg cggttccggt gaaggtgctc tgcgggtttt
     6121 caagcgaggc ggcgagccag aactgcttgt cgtcgaagtc cttggtgatc cgcagctgcg
     6181 gctgacgcgt ccaggcgaag cccggcacgt actgggcttc gatggccggt ggcgggactt
     6241 cgttgcgcgg cgtgatgccc ttgctgttca gcgtcaccag cgaccagttc tggccggcca
     6301 gcatgtgcag gccccagtag tcccaatcca tggtgccgta gaggtggcgg atgcgcggcg
     6361 tgtaggaatt gctttcgttg gaattggctg tctgggccgc gcccaggaag tcgaactcgc
     6421 cgtagaacgc cgcgtgcgtc gcctggttga tgtcgccctg ggccaggaac gagacccggc
     6481 tctgacgagg agaaccgcgc agctcgttga tgtgcgaaag cggcgagttt tcgaacggga
     6541 tcttggcgaa gctcgagctg aggtcggatt ccagggtctt ggagcgatag atgccggccg
     6601 cctcggcgaa gccgccgagg gtaaggctga tgttcttgta cttcagcttg tcgagggtcg
     6661 gggccggctg ggccgccacg gcggtctgca ccgcgcccgg gatctgctcg atctgcatgt
     6721 ccagcttggc ctgggcggcg tgcgcggcga cggtggccgc ctcggccttg ccgtcgctgg
     6781 ccgcgacctg cgcctgggtc tgctgctgcg cctgagcctg cgcctggacc gtggcctgca
     6841 gcgactccac ctgggcccgc aggtccttca cctgctgcgc caggtcgggg ccagtcggag
     6901 ccgccggatg ccggtgcttg gtcgccgcct cggccgttcc acctgtcgcc aaaacgcaca
     6961 cggcgccgag cgccgcgccg ctgagcagcg ccgtcctgaa agtcatggtc gaatctcgtc
     7021 ctgtgcccac gccgctttgt cgcggcctta ggacgctgcg ctagagcgcg acggtaactg
     7081 gaacgcaaag gtttggtgac aattggatga cacccgctat cgacgcgcgg ctcggccgtc
     7141 acccgggcgt tccacctggg atgcaggagc cgattggccg cgctccggat ggcctctgac
     7201 ttccgcaact ggcgcctttc agactttggc aaagcccacg caagcctcaa ttaaaacaga
     7261 cgcatgtcgg aacgaggccg atcatcccat ctacctctac cgggacatcg agctggaggc
     7321 ttagcggcct gggatttcag cgggacggcg atgtcgttgc tgtcgcctgg gtggcgagcg
     7381 cggtcagtct ctcgcgagtc gccatgcggc cgtgcagggc gctggtcagg acgatggttg
     7441 tcgtacgggc ggccaggtag tccacgttgg tccgccggac gtagtgtccc agatccggcg
     7501 cgtagtccca tgcgacgcgc tccaataggc gcatattgac cggtgaatag agttcgcagc
     7561 cgatcgtgaa gacatcgaag cttccggccg gcgtcgcggt gtcgtggcgt gggccgacct
     7621 tgcaggtcca cagcgacatg ttgcgctccc agggccggtc ggccgcgcgc cgggtctcgt
     7681 tgatgaccgt gaagcggacc gacctgccgg cgacgagggg ccagatggcg gccgcccgct
     7741 cggagggcac gcggcggccc tcgccctggt ccatccgcca gctcgacggc ggggtcacga
     7801 agttgcggtt gcgctggtag acgccgccct gcaggccctt ccagctgacg acgtcgccgt
     7861 cgatgccggc cacctgctca acgcggccgt ctgagaagac gaaagcgtcg cccacggcgt
     7921 aggtgggaag ctcggcggat gggcgggagg gttcggaact cgcggccgcc gccagagccg
     7981 cgactgccgc aagccacact ggaatcaccg gcggctctcg atgaggccgt agccgaagat
     8041 cgggtcgcgg ccgggcgcgc ccagatccaa ggcctcgctg gccagcgcct ggaccgcttt
     8101 gcgcgccgcg accgcgtcga cgccggagag gcgccgcgcc agttccacag ctacgattgg
     8161 agacgcgaac gaggtgccgg acaccgcctg tggcatgtcg tcgggaccgg ccgccaggat
     8221 gtcgaccccc agggccgcga acatcacgta gggtccgcga ttggcgtagc ggtagggacg
     8281 gtgggaccga tcgaccgcgg tga
//
LOCUS       DATAJL010000705         2235 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62474,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000705 DATAJL010000000
VERSION     DATAJL010000705.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62474"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..476)
                     /locus_tag="VHN39_13445"
     CDS             complement(<1..476)
                     /locus_tag="VHN39_13445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GcrA family cell cycle regulator"
                     /protein_id="HEX2817396.1"
                     /translation="MGWTDERVELLKKLWQDGLSASQIAKQLGGVTRNAVIGKVHRLG
                     LSGRATPSKPARTTFKAPRPARPISAAPSAPRRLAEPTQHAPHPMPVRYVDETPGTAT
                     VLTLGAHMCKWPIGDPSMDNFTFCGRRSGEGPYCHEHSQVAYQPAQAKKRSGPAELA"
     gene            719..1537
                     /locus_tag="VHN39_13450"
     CDS             719..1537
                     /locus_tag="VHN39_13450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2817397.1"
                     /translation="MKDMALNEAVLPPPAREYPGVNWVGLQTLYVREVQRFIKVGMQT
                     LAAPVVTALLYMLVFVVAVGGGREVHGVAYGTFVAPGLIMMQILSNAFANSASSLLQG
                     KFNGLMGDFITPPLSPLEHLIGFGAGAATRGLFVGAISLVAVLPFARLPVAEPWAVVY
                     FGVSAAMIMGFLGIMAGLWAEKFDHMAAVTNFVIMPMTFLSGTFYLVEKLPEPFRTFS
                     KFNPIFYLIDGFRYGFIGRAEGSLAVGVTLTAAIVLAFGAVCYWMFKTGYKIKT"
     gene            1696..>2235
                     /locus_tag="VHN39_13455"
     CDS             1696..>2235
                     /locus_tag="VHN39_13455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2817398.1"
                     /translation="MAVYSRTPLAFERGEGARLYTTDGEAYLDCMAGIAVNALGHANP
                     KLVQVLKDQAEKLWHVSNIFTIPGQERLAKALTDATFADEVFFTNSGSEAIECAIKTA
                     RKYHWAKGQPERIDIIGFDGSFHGRTMSAINASGNESYLEGFGPPLPGFVHAKFGDLD
                     GLKALVGPTTAAIILEPVQG"
BASE COUNT          335 a          769 c          728 g          403 t
ORIGIN      
        1 gccagttcag ccgggccgga gcgcttcttc gcctgggccg gctgataggc cacctggctg
       61 tgttcgtggc agtacgggcc ttcgccggag cgccggccgc agaaggtgaa gttgtccatc
      121 gacgggtcgc cgatcggcca cttgcacatg tgggcgccca gcgtcaggac ggtcgccgtc
      181 cccggcgtct cgtcgacata gcgtaccggc atcgggtgcg gcgcgtgctg ggtcggctcg
      241 gcgagccggc gcggggccga cggcgccgcg gagatcggcc gcgcgggcct gggcgctttg
      301 aaggtggtgc gggcgggctt cgagggcgtc gcgcggcccg agaggcccag gcgatggacc
      361 ttgccgatca ccgcgttgcg ggtgaccccg cccagctgct tggcgatctg actggctgac
      421 agcccgtcct gccagagttt cttgaggagt tcgacgcgtt cgtccgtcca gcccatgttc
      481 gcctcccgcc cttggtgatc ccgtgagcgc cccctgcgct tcaccgaaat caacatcttg
      541 tggcgcccag caatctcgct gctcaccaac caccaccagt agtaaacaac tccttaaggg
      601 ccacaatagg cgccccgcct ttcgtccaca ggaactagat gttgcgtcca cccgtcgcag
      661 gtccgggtcg cgcgcgcgcc ctcttgcgac gtggcggtcg gcggcgcaca tgaaggacat
      721 gaaggatatg gctctgaacg aagcggtcct gccgccgccg gcgcgcgagt accccggcgt
      781 caactgggtg ggcctgcaga ccctctacgt ccgcgaggtc caacgcttca tcaaggtggg
      841 catgcagacg ctcgccgccc cggtggtgac cgcgctcctc tacatgctgg ttttcgtcgt
      901 cgcggtgggc ggcggccgtg aggtgcacgg cgttgcctac gggaccttcg tggcccccgg
      961 cctgatcatg atgcagatcc tctccaacgc cttcgccaac tccgcctcgt ccctgctgca
     1021 gggcaagttc aacggcctga tgggcgactt catcaccccg ccgctctcgc cgctggagca
     1081 cttgatcggc ttcggcgcgg gcgcggcgac ccgcggcctc ttcgtgggcg cgataagctt
     1141 ggtggcggtg ttgcccttcg cgcgcctgcc ggtggccgag ccctgggccg tcgtttactt
     1201 cggcgttagc gccgcgatga tcatgggctt cctgggcatc atggcgggcc tctgggccga
     1261 gaagttcgac cacatggccg cggtgaccaa cttcgtcatc atgccgatga cgttcctctc
     1321 gggcaccttc tacctggtgg agaagctgcc ggagcccttc cgcaccttct ccaagttcaa
     1381 cccgatcttc tatctgatcg acggcttccg atacggcttc atcggccggg ccgagggctc
     1441 gctggcggtg ggcgtgaccc tgaccgccgc catcgtgctg gccttcggcg cggtctgcta
     1501 ctggatgttc aagaccggct acaagatcaa gacctgagct tcaccggcgt tgacacgccg
     1561 cctcgacaag tcgagaacgc caagccttcc agtccccgtc gctcagcggc ggggatgctt
     1621 ccgttttgga gggctcctcc ggtgaccgag aagaccgcgt cccagactgc cgcgaccgtt
     1681 cccagcgacc acatcatggc ggtctacagc cgcaccccgc tggcgttcga gcgaggcgag
     1741 ggcgcgcgcc tctacaccac cgacggcgag gcctacctgg actgcatggc cggtatcgcg
     1801 gtgaacgcgc tgggccacgc caatccgaag cttgtccagg tgttgaagga ccaggccgag
     1861 aagctctggc acgtctccaa catcttcacg atcccggggc aggagcggct cgccaaggcg
     1921 ctcaccgacg ccaccttcgc cgacgaggtg ttcttcacca actctgggtc ggaggccatc
     1981 gagtgcgcca tcaagaccgc gcgcaaatat cactgggcca agggtcagcc ggagcggatc
     2041 gacatcatcg gcttcgacgg ctcgtttcat ggccgcacca tgtcggcgat caacgcctcg
     2101 gggaacgaga gctacctgga gggcttcggc ccaccgctgc cgggcttcgt gcacgccaag
     2161 ttcggcgacc tggacggctt gaaggctttg gtcggcccga ccaccgcggc gatcatcctg
     2221 gagccggtgc agggc
//
LOCUS       DATAJL010000706         4895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51290,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000706 DATAJL010000000
VERSION     DATAJL010000706.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4895
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51290"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1593)
                     /locus_tag="VHN39_13460"
     CDS             complement(<1..1593)
                     /locus_tag="VHN39_13460"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817399.1"
                     /translation="MTFGWASDDPILLRTYIARYRVVFRVRLISVTALGLAVALSFSP
                     MIALGFVAVQYLLFGLFIWTVEHANRRWDHPATPRQLRLQSLLLGFLIACHGNWLALY
                     VNAAAPGLHVESVLLVITLFLLAGLQVHLSVPSLLLNVAPSFVSLFLITRPEQAGDLA
                     PHLWAGGLFCFAILAASWRQQSTDHQSGLAAAALARRNEELQAALVVAEAASRAKTEF
                     LAVTSHEVRTPLNAVLTMAGVLAREVRNRRHAHLARTIESAGGMLLQLLNGILDFTRA
                     EAGKATLNLTAFDIESLIARLEAVWLPRCQQAGLTLRCEIEAPADCGRVQADAGRIEQ
                     TLVNLISNAEKFSPPGAEILVRCHATSAAPDHIGLRFEVLDRGPGVAPQDQARIFEAF
                     EQTDSGRDKGGAGLGLAICRSNVALMGGAFGRDDRPGGGSKFWLELDAVRADGADPMA
                     DDAPPSLVVARRLRVLAADDHPTNREVLRLLLEPFDIDLDLVDDGAQAAAAAGGAYDL
                     ILMDAKMPVMDGAEATRRIRAAE"
     gene            complement(1713..2111)
                     /locus_tag="VHN39_13465"
     CDS             complement(1713..2111)
                     /locus_tag="VHN39_13465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817400.1"
                     /translation="MASLDSARPGGLFSGDAWDWWQARRLRYNLTLAAGGWAGYALAV
                     GLNYAFGHPVWKDWRGGLGMTIFLGTVYLVVMGIANLCYLLGPAIEGWVHPSDLDGYR
                     KNAFAMGLWGSLLVPAVFPLVQLAMLIAHS"
     gene            complement(2151..2483)
                     /gene="zapA"
                     /locus_tag="VHN39_13470"
     CDS             complement(2151..2483)
                     /gene="zapA"
                     /locus_tag="VHN39_13470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEX2817401.1"
                     /translation="MAQISVDVNGRPYAVGCEDGQEAHLIELAKMFDHQVRQVGQDMG
                     QLGDTRLFLMGALLLADELADARGRLGALQAEVSRLQADRARVESRAVHALEGAAKRI
                     EKLASEEA"
     gene            complement(2488..2784)
                     /locus_tag="VHN39_13475"
     CDS             complement(2488..2784)
                     /locus_tag="VHN39_13475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4164 family protein"
                     /protein_id="HEX2817402.1"
                     /translation="MSGGESALDLVARRLEQAVHVLEQRLAQRLKIAGEDAGGLFDQD
                     RANLAAQLDEARARERELEAAGAEASAALGRAIVEIRAALNGAAPPPSSASAEH"
     gene            3075..>4895
                     /gene="tkt"
                     /locus_tag="VHN39_13480"
     CDS             3075..>4895
                     /gene="tkt"
                     /locus_tag="VHN39_13480"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEX2817403.1"
                     /translation="MPAPLQMMANAIRALSMDAVHKAKSGHQGMPMGMADVATVLFTK
                     FLKYDASQPSWADRDRFVLSAGHGSMLLYSLLHLTGVKAVTMEQIRNFRQLGSNTPGH
                     PEYGHTPGVETTTGPLGQGLATAVGMAMAERHVNARFGDALVDHRTWVVVGDGCLMEG
                     VSHEAISLAGRLKLARLTVLFDDNNTTIDGEATISETGDQLARFKAAGWAVKAIDGHD
                     FAKIAAALRWATKQDRPSLIACKTKISKGAGPKEGDPHSHGYTLFDPEIAAARAAMGW
                     TAEPFTVPDEALKPWRAAGRKGAWVRKAWEAALAGSNQKAEFERAMAGDLPAGAFAAL
                     DAHIARAEAERPAAATRQHSGAALAELIPAIPEMVGGSADLTGSNNTIVKGMEAFDLP
                     DYAGRYVHYGVREFGMAAAMNGMALHGGVIPYSGTFLVFSDYSRPAIRLGALMGARVI
                     HVMTHDSIGVGEDGPTHQPVEHVASLRAIPNLKVFRPADAVEAAECWKLALESRTAPS
                     VMALSRQKVPAVRTVVAGENLSARGAYQLTGAGHPAQVTIFASGSEVGVAMAARDLLE
                     AQGIGARVVSTPCWELFDAQPADYQAQVIGETDVRVAVEAG"
BASE COUNT          801 a         1738 c         1654 g          702 t
ORIGIN      
        1 ctcggcagcc cggatgcgcc gggtggcttc cgctccgtcc atcaccggca tcttggcgtc
       61 catgaggatc agatcgtaag ccccgccggc tgcggcggcg gcctgagcgc cgtcgtcaac
      121 caggtccagg tcgatgtcga acggctcgag gagaagcctc agcacctcgc gattggtcgg
      181 atgatcgtcg gccgccagaa cccgcaggcg ccgagccacg acgagactgg gcggcgcgtc
      241 gtcggccatc gggtcagcgc cgtcggcgcg tacggcatcg agctccagcc agaacttcga
      301 accgccgccc gggcgatcgt cgcgtccaaa tgcgccgccc atcagcgcga cgttgctgcg
      361 gcagatcgcc aaaccaaggc ctgcgccacc cttgtcgcgg ccggagtcgg tctgctcgaa
      421 cgcttcgaat atgcgcgcct gatcctgggg tgcgaccccg ggcccgcggt cgaggacctc
      481 gaaccgcagg ccaatgtgat ccggcgcggc ggacgtcgcg tggcaacgca ccaggatttc
      541 ggctcccggc gggctgaact tctcagcgtt ggagatgaga ttgaccaggg tttgctcgat
      601 acgccctgcg tcggcctgca cccgcccgca gtcggccggc gcctcaatct cgcaccgcag
      661 ggtgagcccg gcctgctggc acctgggcag ccagacggct tccaaccgcg cgatcaggct
      721 ctcgatgtcg aacgcggtca gattgagcgt cgccttgccg gcctcggcgc gggtgaagtc
      781 caggatcccg ttgagcagct gcagcagcat gccgccggcg ctctcgatgg tccgcgccag
      841 gtgcgcgtga cggcgattgc gcacttcgcg ggccagcacg ccagccatcg tcagcacggc
      901 gttcagcggt gtccgcacct cgtggctggt caccgcgaga aactcggtct tggcgcggct
      961 cgccgcttca gcgacgacga gggcggcctg cagctcttcg ttgcggcggg cgagcgcggc
     1021 cgccgccagg ccggattgat ggtcggtgct ctgctggcgc caggaggccg ctaggatcgc
     1081 aaagcagaag agcccgcccg cccacaggtg gggcgccaag tccccggcct gctccggccg
     1141 ggtgatcagg aacaggctga cgaaggacgg cgcgacgttg agcagcaggc tcgggaccga
     1201 caggtgcacc tgcagcccgg ccagcaggaa gagggtgatg accagcagaa cgctttcgac
     1261 atgcaggccg ggcgccgcgg cgttcacata aagcgcgagc caattgccgt ggcaggcgat
     1321 caggaagccg agcaggaggg actgcagccg cagctggcgg ggcgtcgcgg ggtgatccca
     1381 tcggcgattg gcgtgttcga ccgtccagat gaacagaccg aagagcaggt attggacggc
     1441 gacgaacccc agagcgatca tcggcgaaaa gctgagggcc acggccagcc cgagcgccgt
     1501 cacagagatc aaccgcactc gaaacaccac gcgatagcgc gcgatatagg ttcgcaacag
     1561 gatgggatcg tcggatgccc agccgaaagt catgcgcgcc ccgccccggt actgcccggg
     1621 ccggaacctg caccgggacg ccacaaggcg ggcttaacaa cgcacggcag atcgtcgcac
     1681 ccccaggggg ccaagcgacc ggccggccgc cgtcagctgt gggcgatcag catggccagc
     1741 tgcaccagcg ggaagacggc gggaaccagc agcgagcccc aaaggcccat ggcgaaggcg
     1801 ttcttgcggt agccgtcgag gtcggaggga tggacccagc cctcgatcgc cggacccagc
     1861 aggtagcaga ggttggcgat ccccatgacc accagataga cggtcccgag gaagatcgtc
     1921 atgcccaggc cgccgcgcca gtccttccag accggatggc cgaaggcgta gttgaggccg
     1981 accgccaggg cgtagcctgc ccagccgccc gccgcgaggg tgaggttgta gcgaaggcgc
     2041 cgggcctgcc accagtccca ggcgtcgccg gaaaagaggc cgccgggccg cgcgctatcg
     2101 agggaagcca tggtcacgct ccgtcctgat gaccgagcct aacacgaaac ctaggcctcc
     2161 tccgaggcca gcttctcgat gcgtttggcg gcgccctcca gcgcgtggac ggcgcggctt
     2221 tccacgcgcg cgcggtcggc ctgcaggcgg gagacctcgg cctgcagcgc gcccaggcgg
     2281 ccccgggcgt cggccagttc gtcggccagc agcagggcgc ccatcaggaa caggcgcgtg
     2341 tcacccagct ggcccatgtc ctggccgacc tggcggacct ggtggtcgaa catcttggcg
     2401 agctcgatga ggtgggcctc ctggccgtcc tcgcagccca cggcataggg ccggccgttc
     2461 acgtcgacgc tgatctgggc catggcctta gtgctccgcc gaagctgaag aggggggcgg
     2521 cgctgcgccg ttcagggcgg cgcggatttc gacaatggct cggccgagcg cggcggaggc
     2581 ctcggcgccg gccgcttcca gctcgcgctc gcgggcccgc gcctcgtcca gttgggcggc
     2641 caggttggcg cggtcctggt cgaacagacc gccggcatcc tcgcccgcga tcttcagccg
     2701 ctgggcgagc cgctgctcca gcacatgcac cgcctgttcc agccgccggg ccaccaggtc
     2761 cagggcgctc tcgccgccgc tcatcgccgt cctcctgcta gcgtcccggt tccgaagttc
     2821 gcaagcgctt gaggcgagct ctgacgaact tcggaaccga gaaggacact agaaagccta
     2881 cgcctccagt gtgctcttag gatttgaagt tcgctccgag ctcgaccctg cacgaggcga
     2941 acttcaaatc ccgcacactg gcctatctat agacctgcgt cgccttggtc cgaaagcatg
     3001 cccttttctt gaccctcacg tccccgcgtg cgaccccgcc cgcattcctt cacgcctgcg
     3061 attcaagggt cccgatgcct gcgcccctcc agatgatggc caacgccatt cgcgccctgt
     3121 ccatggacgc ggtgcacaag gcgaagtccg gccaccaggg catgcccatg ggcatggcgg
     3181 acgtggcgac ggtgctgttc acgaagttcc tcaagtatga cgcttcacag ccgtcgtggg
     3241 ccgaccgcga ccgcttcgtg ctctcggccg gccacggctc gatgctgctc tacagcctgc
     3301 tccacctgac cggggtgaag gcggtgacca tggagcagat caggaacttc cggcagctcg
     3361 gctccaacac cccgggccac ccggaatacg gccacacccc gggcgtcgag accaccaccg
     3421 ggccgttggg ccaggggctc gccaccgccg tcggcatggc catggctgag cggcacgtga
     3481 acgcccgctt cggcgacgct ctggtggatc accgcacctg ggtggttgtc ggcgacggct
     3541 gcctgatgga aggcgtcagc cacgaggcga tcagcctggc cgggcggctg aagctcgcca
     3601 ggctgaccgt ccttttcgac gataacaaca ccaccatcga cggcgaggcg accatctcgg
     3661 agaccggcga ccagctcgcc cgcttcaagg cggctggctg ggcggtgaaa gccatcgacg
     3721 ggcacgactt cgcaaagatc gctgcggccc tgcgctgggc gaccaagcag gaccgcccga
     3781 gcctgatcgc ctgcaagacc aagatctcca agggcgccgg ccccaaggag ggcgacccgc
     3841 acagccacgg ctacaccctg ttcgacccgg agatcgccgc agcgcgcgcc gccatgggct
     3901 ggaccgccga gcccttcacc gtgcccgacg aggcgctgaa gccctggcgc gccgccggcc
     3961 gcaagggcgc ctgggtccgc aaggcctggg aggcggctct ggccggttcg aaccagaaag
     4021 ccgagttcga acgcgccatg gcgggcgacc tgccggccgg cgccttcgcc gccctcgacg
     4081 ctcacatcgc ccgcgccgag gccgaaagac ccgccgccgc gacacgccag cactccggcg
     4141 cggcgctcgc cgagttgatc ccggccattc cggagatggt cgggggttcc gctgacctga
     4201 ccggctccaa caacacgatc gtcaagggca tggaggcctt cgacctgccc gactacgccg
     4261 gccgctacgt tcactatggg gtgcgcgagt tcggcatggc cgcggccatg aacggcatgg
     4321 cgctgcatgg gggtgtgatc ccctattccg gcaccttcct ggtgttctcc gactacagcc
     4381 gtccggcgat ccggcttggg gccctgatgg gcgcccgcgt gatccacgtc atgacccacg
     4441 actcaatcgg cgtcggcgag gacggcccga cccatcagcc ggtggagcac gtcgcctccc
     4501 tgcgcgcgat ccccaacctc aaggtcttcc ggccggccga cgcggtggag gccgccgagt
     4561 gctggaagct ggcgctggag tcccgcaccg cgccctcggt catggcgctc tcccgccaga
     4621 aggtcccggc ggtgcgcacg gtggtcgccg gcgagaacct ctcggcgcga ggcgcctatc
     4681 aactgaccgg cgccggccat cccgcccagg tcaccatttt cgcctccggt tccgaggtcg
     4741 gcgtcgccat ggcggcccgc gacctactgg aagcccaggg catcggcgcc cgggtggtct
     4801 cgacgccgtg ctgggagctg ttcgacgccc aacccgccga ctatcaggcc caggtgattg
     4861 gtgaaacgga cgtccgcgtc gccgtcgaag ccggc
//
LOCUS       DATAJL010000707         8360 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62482,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000707 DATAJL010000000
VERSION     DATAJL010000707.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8360)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8360)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8360
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62482"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2794
                     /gene="polA"
                     /locus_tag="VHN39_13485"
     CDS             <1..2794
                     /gene="polA"
                     /locus_tag="VHN39_13485"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEX2817404.1"
                     /translation="LYLIDGSGFIFRAFHALPPLTRKSDGVPVGAVAGFCNMLWKLLV
                     DMKASAEAPTHLAVIFDHSESTFRNKLYDQYKAHRPPAPEDLVPQFPLVRDATRAFGV
                     PSIELPGYEADDLIAAYACKVRDAGGEVVIVSSDKDLMQLVGPNVSMLDTMKTPNLVI
                     RAEQVFDKFGVTPDKVVDVQALCGDSVDNVPGAPGIGVKTASLLINEFGDLDTLLARA
                     GEIKQDKRRQTLIDFADQIRLSRQLVQLDCDTPLPQPVDELAVEEPNAETLAAFLDKM
                     EFRTLARRVAEAQGTAPTATPTPAAAKPADAPVHGAIDVNAYECVRDLATLDAWIAKA
                     LAKGLVAFDTETDALSASSANLCGVSLATAPGEACYIPLGHEQEHEGGLQLDAPVELA
                     QIPLADALARLKPLLESPAVLKVAQNGKYDLAVLERYGISVGPMDDTMLIAFALEGGL
                     HKSYGMDELSKRLLDHEPISFKTVAGTGKAQKSFKHVELQSATCYAAEDADVTLRIYE
                     HLRPRLAREHLLTVYETLERPMPKVLVEMELAGVKVDPETLRRLSNDFAVRMGELELD
                     AHRVAGRPFNLGSPKQIGDILFSEMGLASGRTTATGAQSTDASMLEDLAAQGHELPRI
                     LLDWRQLSKLKGTYTDNLVAAIDPKTNRVHTSYSLAAATTGRLASSDPNLQNIPVRTE
                     EGRKIRKAFIAEPGHVLISADYSQIELRLLAHIGDIPQLKAAFAQGLDIHAMTASEMF
                     GVPVEGMPAETRRRAKAINFGIVYGISAFGLANQLSIPREEAGAYIKTYFERFPGIRT
                     YMDRMQRQVRAEGFVTTIFGRKVFIPAAQGHSQAERSFGDRAAINAPIQGAAADVIRR
                     AMVRMPQALRDAGLKARMLLQVHDELIFEAPEAEADAVIAVAKSIMEKAAEPAVSLSV
                     PLVVDARAAANWDDAH"
     gene            2804..3706
                     /locus_tag="VHN39_13490"
     CDS             2804..3706
                     /locus_tag="VHN39_13490"
                     /inference="COORDINATES: protein motif:HMM:NF018436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1206 domain-containing protein"
                     /protein_id="HEX2817405.1"
                     /translation="MDGEAPATVPHVPGAQIAARLRRRFAASPWGATAEMAARLGYMA
                     RGTVYLSIGLIALLAVARLAPHTSGALGALEAWAHWRLGVVLLWLTGIGLWGFAGWRA
                     LQSLFDADRQGLGAQAVASRVGQALSGLIYGAMAVSIFDLIETLHDIRHLGEQARTRE
                     TVAAVLTWPMGSTLILALGAFIIACGLGNAIRACLDNFGSTLRCDPKVAVWACRLARV
                     GYFGRGVAMLPVGFFMLTAGWHARASEAKGVGGALWALHSRVLGDLMLTAVALGLVAF
                     GAFAFVEAWYRPIRPEGAFSSAGA"
     gene            complement(3703..5121)
                     /locus_tag="VHN39_13495"
     CDS             complement(3703..5121)
                     /locus_tag="VHN39_13495"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HEX2817406.1"
                     /translation="MFDAYIAFQARIQPHAAALISPTRWSTYAQLEAEVNRFAVALRK
                     LGVTPALGVAAIAVGDAYLKHVVFAALARLGVVSSPADDPAADLYLSDWDASAEPGRL
                     FLSPEWLAATRDAEPEAIAPARGPGDGLVRVMLSSGTTRTARRVARTWRQIEDNGRTA
                     ALTYLARKGGRWVAVTGLDTGLGQSMALAAWACGAALVTDVTVDWLAGQMEALQPTIV
                     GLTPIQLRNLLSCLPPGFVAPPALRLALTGSVLSQAVALEARLRLSPDICISYGATEC
                     GSATMGPGTMLEADAGAAGYPVPGVRIEVVDAQGAPLPTGQQGEVRITTDRTSAGYIG
                     DPEATAAAFRDGGFYPGDVGRLLPDGLLVIEGRADDRMNLGGRKFLPNLMEEVALACP
                     GVVDAAAFAVPDEHGIDFCWLAVVQGEDFQRDRLAELIQAQGDTLPPVRFAFTESIPR
                     NASGKVERERLRRETMAVLGLA"
     gene            complement(5258..5536)
                     /locus_tag="VHN39_13500"
     CDS             complement(5258..5536)
                     /locus_tag="VHN39_13500"
                     /inference="COORDINATES: protein motif:HMM:TIGR03793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NHLP leader peptide family RiPP precursor"
                     /protein_id="HEX2817407.1"
                     /translation="MSNTVDSQTRVIGQAMSDPAFRKRLLADPAGTLKGAGVEVPEGV
                     TIQVVEDTGTKVHLVLPAHADEILDIDLDRAVGGMTGAGAKNTHESCV"
     gene            complement(5619..5906)
                     /locus_tag="VHN39_13505"
     CDS             complement(5619..5906)
                     /locus_tag="VHN39_13505"
                     /inference="COORDINATES: protein motif:HMM:TIGR03793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NHLP leader peptide family RiPP precursor"
                     /protein_id="HEX2817408.1"
                     /translation="MSNTVDSQTRVIGQAMSDPAFRKRLLADPVGTLRGAGVEVPEGL
                     SVEVVEDTATRVHLVLPAPIEDSALADRDLDAAIGAAARCGGATQCLNDTK"
     gene            6082..7512
                     /locus_tag="VHN39_13510"
     CDS             6082..7512
                     /locus_tag="VHN39_13510"
                     /inference="COORDINATES: protein motif:HMM:NF024964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4135 domain-containing protein"
                     /protein_id="HEX2817409.1"
                     /translation="MAAPSLSEDDLRAIAGRASTIDERLAGLVVVEEPNSAAEREHAH
                     RLHSEWRQAAADGDDALFARRLSRDGLDEKAALRLLGRARLSAGSPLPEWAKTFQRCL
                     SEGDGRSPPPPHVEGADPEPFEELLWPFVVAARRILAERAGDRLNRLFAPNAILALER
                     GLLRRLALLCGPGLFGDFSLFRHMERHQRGRFALPFSAPGSTVIYDAFKDAWRDGRRS
                     DFFMAHPVAARLVGVAVSNWVESTAELIDRLARDRSALAERFSSDAPSGLVEAVETGL
                     SDPHRGGRTVLILTFAGSLKLVYKPKDTRVDAAWSSLVDWINDHGAPVALRPVRLLVR
                     EDYGWCEFIRAEGVPEQRHQALYFRRAGGLLAVLHLLRASDFHHENVIPAGGFPVPVD
                     LESLARPDLAKTPGGSLAGAAADLAQSLLDDSVLTTLYLPTWAPGPGGRLKAIGGGGA
                     RRSWPDLDKLSGDQHRRDGHRRRRVP"
     gene            7484..>8360
                     /locus_tag="VHN39_13515"
     CDS             7484..>8360
                     /locus_tag="VHN39_13515"
                     /inference="COORDINATES: protein motif:HMM:NF024964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4135 domain-containing protein"
                     /protein_id="HEX2817410.1"
                     /translation="MAIAGAAFPEDGESALGGTAQVAVHLRDFMAGFDDLYAFLVGNR
                     AALLEPGGPLAPFRGVVVRVILQATRAYWLVQRRARAYANLADGAAWSLNFDYLLRGD
                     LAVETAPGTWAMRAAEREAAAACDIPMFTARTDATWLEACSGRRIESCLAASPFDQLL
                     ARVRRLGDEDRAFQARIIGSTIAPPHVEQGERRTARGDAPDQTTPDLTKMAIGLGDML
                     DDSAIRAGDRAAWYGLVALDHEHSQVSVLGVDLMSGTTGLAVFCAALARTTGEARFRD
                     LALAAITPARAGLTSG"
BASE COUNT         1269 a         2950 c         2833 g         1308 t
ORIGIN      
        1 gctctatctg atcgatgggt ccggcttcat attccgggcc ttccatgcgc tcccgccgct
       61 gacccgcaag agcgacggcg taccggtcgg ggccgtggcc ggcttctgca acatgctgtg
      121 gaagctcttg gtggacatga aggcgtccgc cgaggcgccg acccatctgg cggtgatctt
      181 cgaccactcg gaatcgacct tccgcaacaa gctctacgac cagtacaagg cccaccgccc
      241 gccggcgccc gaggacctgg tgccgcaatt cccgctggtg cgcgacgcga cccgggcgtt
      301 cggcgtgccc tcgatcgagc tgcccggcta cgaggccgac gacctgatcg cggcctatgc
      361 ctgcaaggtg cgcgacgccg gcggcgaggt ggtgatcgtc tcctccgaca aggacctgat
      421 gcagctggtc gggcccaacg tctcgatgct cgacaccatg aagacgccca acctggtgat
      481 ccgcgccgag caggtgttcg acaagttcgg ggtgacgccg gacaaggtgg tggacgtcca
      541 ggccctgtgc ggagattccg tggacaacgt ccccggcgcg ccgggcatcg gggtcaagac
      601 ggcttcgctg ctgatcaacg aatttggcga cctcgatacg ctgctggccc gggccggtga
      661 gatcaaacag gacaagcgcc gccagaccct gatcgacttc gccgaccaga tccgcctgtc
      721 gcgccagctg gtgcagctcg actgcgacac gccgttgccg cagccggtgg acgagctggc
      781 ggtggaagag cccaacgccg agacgctggc ggccttcctc gacaagatgg agttccgcac
      841 cctggcccgc cgggtggcgg aggctcaagg aaccgcgccc accgccacgc cgacgccggc
      901 ggccgccaaa ccggcggatg cgccggtgca cggcgccatc gacgtcaatg cctatgagtg
      961 tgtccgcgac ctcgccacgc tggacgcctg gatcgccaag gccctcgcca aggggctcgt
     1021 cgccttcgac actgagaccg atgcgctatc ggcctccagc gccaacctct gcggcgtgtc
     1081 gctggccacc gcgcccggcg aggcctgcta catcccgctc ggccacgagc aggagcacga
     1141 gggcgggctg cagctggatg cgccggtgga gctcgctcag attccgctgg ccgacgccct
     1201 cgcgcggctg aagccgctgc tggaatcgcc ggccgtcctg aaggtcgccc agaacggcaa
     1261 atacgacctc gccgtcctgg aacgctacgg gatcagcgtc gggcccatgg acgataccat
     1321 gctgatcgcc ttcgccctcg aaggcggcct gcacaagagc tacggcatgg acgagctctc
     1381 caagcgcctg ctcgaccacg agccgatcag cttcaagacc gtggccggga ccggcaaggc
     1441 gcagaagagc ttcaagcacg tggaactaca gtcagccact tgctacgcag cggaagacgc
     1501 cgacgtcacc ctgcgcatct atgagcacct gcggccccgc ctggcgcgcg agcatctgct
     1561 gaccgtctac gagaccctgg aacggccgat gcccaaggtg ctggtcgaga tggagctggc
     1621 gggcgtcaag gtcgaccccg agaccctgcg caggctttcc aacgatttcg ccgtgcgcat
     1681 gggcgagctg gagctcgacg cccaccgagt ggccggccgg cccttcaacc tgggctcgcc
     1741 caagcagatc ggcgacatcc tgttttcgga aatgggcctg gcttcgggcc ggaccaccgc
     1801 cacgggcgcg caatccaccg acgcctccat gctggaggac ctggcggccc agggccatga
     1861 gctgccgcgc atcctgctcg actggcgcca gctctcgaag ctgaagggca cctacaccga
     1921 caatctggtc gctgcgatcg acccgaagac caaccgcgtg cacacctcct attccctggc
     1981 cgcggccacc accgggcgcc tcgcctcgtc ggaccccaac ctgcagaaca tcccggtccg
     2041 caccgaagaa ggccgcaaga tccgcaaggc cttcatcgca gagccgggcc atgtgctgat
     2101 cagcgccgac tacagccaga tcgaactgcg gctgctggcc cacatcggcg acatcccgca
     2161 actgaaggcc gcgttcgctc aggggttgga catccacgcc atgacggcgt ccgagatgtt
     2221 cggcgtgccg gtggaaggca tgcctgccga gacccgccgc cgcgccaagg cgatcaactt
     2281 cggcatcgtc tacggcatct cggctttcgg gctggccaac cagctctcga tcccgcgcga
     2341 ggaggccggc gcctatatca agacctactt cgaacgtttc cccggcatcc gcacctacat
     2401 ggaccgcatg cagcgccagg tccgcgccga gggcttcgtc accaccatct tcggccgcaa
     2461 ggtgttcatc ccggcggcgc aaggccactc gcaggccgag cgctccttcg gcgaccgcgc
     2521 cgccatcaac gccccgatcc agggcgccgc ggccgacgtg atccgccgcg ccatggtgcg
     2581 gatgccccag gccctgcgcg acgcggggct gaaggccagg atgctgctgc aggtgcacga
     2641 cgaactgatc ttcgaggcgc ctgaggccga ggccgacgcg gtgatcgcgg tggccaagtc
     2701 gatcatggaa aaggcggccg agcccgccgt ctcgctgtct gtccccctgg tggtcgacgc
     2761 ccgcgccgcc gccaactggg acgacgcgca ctagggaggc agcatggacg gcgaggcccc
     2821 agcgaccgtc ccacacgttc ccggcgccca gatcgccgcg cgcctgcgcc gccgtttcgc
     2881 cgcctcgccg tggggggcca cggctgagat ggccgcgcga ctgggctata tggcgcgggg
     2941 cacggtctat ctgagcatcg gcctgatcgc gctgctggcc gtggcgcgcc tggcgccaca
     3001 caccagtggc gcgcttggag cgctggaggc ctgggcgcac tggcggctgg gcgtggtgct
     3061 cctgtggctt accggcatag gcctgtgggg gttcgccggc tggcgggcgc tgcagtcgct
     3121 gttcgacgcc gaccggcagg ggctcggcgc ccaggcggtc gccagccgcg tcggccaggc
     3181 gctgagcggt ctgatctacg gcgccatggc cgtctcgatc ttcgacctga tcgaaaccct
     3241 gcacgacatc cgccatctgg gcgaacaggc ccgcacgcgc gagacggtgg ccgcggtcct
     3301 gacctggccg atgggctcga ccctgatcct ggcgctcggc gccttcatca tcgcctgtgg
     3361 cctgggcaac gcgatccgcg cctgcctcga caatttcggt tcgacgctga ggtgcgatcc
     3421 gaaggtcgcg gtctgggcct gccggctggc ccgggtgggc tatttcgggc gcggcgtcgc
     3481 catgctgccg gtgggcttct tcatgctgac cgccggttgg cacgcgcgcg cctctgaggc
     3541 caagggcgtc ggcggggcgc tctgggcgct gcattcccgg gtgctgggcg acctgatgct
     3601 gaccgcggtg gcgctgggcc tggtggcctt cggcgccttc gccttcgtgg aagcctggta
     3661 ccgtccgatc cgcccggaag gggcgttcag cagcgcgggg gcctaggcca gccccagcac
     3721 ggccatggtc tcgcgccgca gccgctcgcg ctcaaccttg ccgctggcgt tgcgcgggat
     3781 ggattcggta aaggcgaacc ggaccggcgg aagagtgtcg ccctgcgcct ggatcagctc
     3841 ggccaggcgg tctcgctgga aatcttcccc ctgcaccacg gccagccagc aaaaatcgat
     3901 cccgtgctcg tcgggcacgg cgaaggccgc ggcgtcgacc acgcccgggc aggccagcgc
     3961 cacctcctcc atcaggttgg gaaggaactt gcgcccgccg aggttcatcc ggtcgtccgc
     4021 gcggccctcg atcaccagca gcccgtcggg cagcaaccgc cccacgtccc ctggatagaa
     4081 gcccccgtcg cgaaacgccg ccgcggtggc ctcgggatcg ccgatgtagc ccgccgaggt
     4141 ccgatcggtg gtgatccgca cctcgccctg ctgtccggtg gggagcggcg cgccctgggc
     4201 gtcgaccacc tcgatgcgga cgccgggaac cggatagccc gcagcgccgg cgtcggcttc
     4261 gagcatcgtc ccaggaccca tcgtagcgct gccgcattcg gtcgcgccgt agctgatgca
     4321 gatgtcgggg ctgagtcgga gccgcgcctc aagggcgacg gcctgcgaca gcacactgcc
     4381 ggtgagcgcc aaccgcaagg ccggcggcgc cacgaaccct ggcggcaggc acgacagcag
     4441 gttgcgaagt tggattggcg tgagcccgac gatggtcggc tgaagcgcct ccatctgacc
     4501 ggccagccag tccacggtga cgtccgtcac cagggccgcg ccgcaggccc acgcggcgag
     4561 cgccatggac tggccaaggc cggtgtccag gccggtcacc gccacccagc gcccgccctt
     4621 gcgagccagg taagtcaggg ccgcggtgcg cccattgtct tcgatctgcc gccaggtcct
     4681 ggccacccgg cgggccgtgc gggtggtgcc ggaggacagc atgacccgca cgaggccgtc
     4741 gccaggccct cgagccggcg cgatcgcctc cggctcggcg tcgcgggtgg ccgccagcca
     4801 ttcgggcgac aggaacagac gccccggctc ggccgatgca tcccagtcgg aaagatacag
     4861 gtccgcggcc ggatcgtccg ccggcgagga caccacgccc aggcgggcga gggccgcgaa
     4921 gaccacatgt ttcaggtagg cgtcccccac cgcgatggct gccacgccga gcgccggggt
     4981 gacacccagc ttccgaaggg cgacggcgaa ccggttcacc tccgcctcca gttgcgcgta
     5041 ggtcgaccag cgcgtggggc tgatcagggc tgcggcatgc ggctggatcc gcgcctggaa
     5101 ggcgatgtag gcgtcaaaca tcgggccagc ttatgcgccg ccagccgacg ggggcaaatt
     5161 cccgcccgag gcacgcggtt cgagggctat agctcggcga tcgccgcccg gcgctcctcg
     5221 tagtcggccg cctgcgtgcg cgccttcagt ccttcgccta aacgcagctc tcgtgcgtat
     5281 ttttggcgcc cgcccccgtc atcccaccca cggcgcggtc aaggtcgata tcaagtatct
     5341 cgtccgcgtg cgcgggcagg accagatgca ccttggtccc ggtgtcttcg acgacctgaa
     5401 tggtgacgcc ctccgggacc tcgacgcccg cgcccttcag cgtcccggcc ggatcggcca
     5461 gcagccgctt gcggaaggca ggatcgctca tggcctggcc gatgacgcgc gtctgggagt
     5521 ctaccgtgtt cgacatgctt ctttatcctg gttgagggac ggtggtgggc tagtggacat
     5581 ccggtgaata tggtcgccac cgagcgaggt cgcgtcggtc attttgtgtc gttcagacac
     5641 tgggtggcgc ccccgcagcg cgcggcggcg ccaatcgccg cgtcgaggtc ccggtccgcc
     5701 aaggcgctgt cttcgatcgg cgccggcagg accagatgca cccgcgtcgc cgtgtcctcg
     5761 acgacctcca cggagagtcc ctctggaact tccacgcccg cgccccgcaa agtcccgacc
     5821 ggatcggcca gcagtcgctt gcggaaggca ggatcgctca tggcctggcc gatgacgcgc
     5881 gtctgggagt ccaccgtgtt cgacatgcgt cgctccccgg atggttgatg tccgatcctc
     5941 aagatatacg gacgcggacc gggttcggat tagttcaccg aacaaactat ttgacgaagc
     6001 cgtatcatcg cgagagatgc gcggcaacgc atgcccagct cgagcgcctt tgcccgccgc
     6061 tgctgtaacg agactgatag ggtggccgca ccgtcattgt ccgaggacga tctgcgcgcc
     6121 atcgccgggc gcgccagcac gatcgacgaa cgcctcgcgg ggttggtcgt cgtcgaggag
     6181 ccgaacagcg ccgccgagcg cgagcatgct caccggctac attctgaatg gcgccaagcc
     6241 gcagccgatg gcgatgacgc cctgttcgcg cgaaggctat cgcgggacgg cttggacgag
     6301 aaggccgcat tgcgcctgtt gggtcgtgcg cgtctatcgg caggttcgcc gttgccggag
     6361 tgggccaaaa cattccaacg ctgcctcagc gagggcgatg gacggtcgcc gccgccgccg
     6421 catgtcgagg gcgccgaccc cgagccgttc gaggaacttc tgtggccgtt tgtcgtcgcc
     6481 gcgcgccgga tcctggcaga gcgggccggg gacaggctga accggctatt cgccccaaat
     6541 gcgattctcg ccctggagcg tggcctgttg cggcggctcg cccttctgtg tgggcccgga
     6601 ctgttcggtg acttcagcct ttttcggcac atggagaggc atcagcgcgg ccgtttcgcg
     6661 ctaccgttct cggcccccgg atcaacggtg atttacgacg ccttcaagga cgcctggcgt
     6721 gacggccgtc gctctgattt cttcatggcc catcccgtcg cggctcgact ggttggcgtc
     6781 gcggtttcca actgggtcga gagcaccgcc gaactgatag atcggctggc gcgagacagg
     6841 tcagccctcg cggaaaggtt ctcgtcggac gccccttccg ggctcgtcga ggcggtcgag
     6901 acgggcttgt cggacccgca ccggggcggc cgaacggtat tgatcctgac cttcgctggc
     6961 agcctgaagc tggtctacaa gccgaaggac acccgcgtgg acgccgcctg gtcgagcctg
     7021 gtggactgga tcaacgatca tggcgcgccc gtggcgctca ggccggtgcg cctattggtc
     7081 cgagaagact acgggtggtg cgaattcatt cgcgccgagg gtgtcccaga gcagagacat
     7141 caggcgctct acttccgccg cgccggcggg ctcctggccg tgctgcacct cttgcgcgcc
     7201 tccgattttc accatgagaa cgtgattccc gccggcggct ttcccgtgcc agtcgatctc
     7261 gaatccctgg ccaggccgga cctggccaag accccgggcg gcagtctcgc cggggccgca
     7321 gccgatctgg cgcagtcgct gttggacgac tcggtcctga cgacgctcta tctgccgacc
     7381 tgggcgcccg gtccgggcgg caggctgaag gccatcggcg gcgggggagc ccgccgatcc
     7441 tggcctgacc tggacaagct ttcgggggat caacaccgac gcgatggcca tcgccggcgc
     7501 cgcgttccct gaagatggcg aatccgcgct cggcgggacg gcccaagtcg ccgtccacct
     7561 ccgggacttc atggcgggct tcgacgacct ctacgcgttt ctggttggaa accgcgcggc
     7621 gctcctcgaa cccggcggcc cgctggcgcc gttccgcggc gtcgtggtcc gcgtcatcct
     7681 ccaggccacc cgcgcctatt ggctggtcca gcggcgcgcg cgcgcctatg ccaatctcgc
     7741 cgacggcgcg gcctggagct tgaatttcga ctatctgctg cggggggatc tggccgtcga
     7801 gacggcgcct ggaacctggg cgatgcgcgc ggccgagcgc gaggccgcgg ccgcctgcga
     7861 tatcccgatg ttcaccgcgc gcaccgacgc cacgtggctc gaggcctgct cgggacggcg
     7921 gatcgaatcc tgcctcgcgg cgtccccgtt cgatcagctc ctggcgcggg tccggcggct
     7981 cggcgacgag gaccgggcgt tccaggcgcg gataatcggc agtacgatcg cgccgcccca
     8041 tgtcgaacag ggtgaacgcc ggaccgcccg cggcgacgcg ccggatcaaa cgacccctga
     8101 tctgacaaag atggcgatcg ggctcggcga catgctcgac gactcggcga tccgcgccgg
     8161 cgaccgcgcc gcctggtacg gcctcgtcgc gctcgatcac gagcacagtc aggtctcggt
     8221 gctgggtgtc gatctgatga gcggcacgac cggcctggcg gtgttctgcg ccgccctggc
     8281 gcggaccacc ggagaggcgc gattccgcga cctggcgctc gcggcgataa cgcccgcgcg
     8341 cgcgggcttg acctccggag
//
LOCUS       DATAJL010000708         2402 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51298,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000708 DATAJL010000000
VERSION     DATAJL010000708.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51298"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1498)
                     /gene="recJ"
                     /locus_tag="VHN39_13520"
     CDS             complement(<1..1498)
                     /gene="recJ"
                     /locus_tag="VHN39_13520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008297 - single-stranded DNA
                     exodeoxyribonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEX2817411.1"
                     /translation="MADGSPQLGYLGVTRSLSGRLWRERAADPELVRRHQLNHGLSEP
                     LARALAARGVLAEQGETYLNPTLKALFPDPSTFTDMDKAAAILVDALERKRPLVVFAD
                     YDVDGASSAAQLVRWFRALGHDLPIYVPDRILEGYGPSPAAFRRLKAEGAELVITVDC
                     GAAAHDALACAAEIGLEVVVIDHHLMRGEEIPHVAALVNPNRPDDTSGQGHLAAAGVT
                     FVLLAALNREARKRGLFGDRAEPDLRQWLDLAAMGAICDVTELRGFNRALAAQGLKVM
                     SGWRNPGLKALLDVAKSQGPASVFHVGFILGPRINAGGRIGRADLGARLLSTDDPEEA
                     RGLAEELDALNASRKEVEREVTEAAIAHIETESNQADAPMLLVAQDDWHPGVIGIVAG
                     RLREKYRKPVVVVGVDRAANVGKGSGRSQPGVNLGRAVQAAYDEGLLLAGGGHAMAAG
                     LSVRPDTIPELRAFLCERLAAESEIAAAEDALEIDALVTTRGCDRALWQ"
     gene            1701..>2402
                     /locus_tag="VHN39_13525"
     CDS             1701..>2402
                     /locus_tag="VHN39_13525"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX2817412.1"
                     /translation="MTAYDAVDGSRLGPSGITRRGMLGAAAGTAALLAGPAFAARKLS
                     ASDRVNIAVIGAGGQGASNMSKLTSQNIVATADVDYDHVLHALVDKTGWISPSKEPLK
                     AAYDKAARYTDYRKMFDAQKDIDAVLIATPDHHHAVAARWAMERGYHVFVQKPLTYNI
                     TESRKLASLAAANPNMITQMGNQGHSGDDGRRVIELIRGGVIGPVHEVHVWTNRPVWP
                     QGVQKPAAVGAPGSLD"
BASE COUNT          396 a          849 c          829 g          328 t
ORIGIN      
        1 cctgccagag cgcgcggtcg cagccgcggg tggtgaccag ggcgtcgatt tccagggcgt
       61 cctcggccgc ggcgatctcg ctctcggcgg ccagccgctc gcagaggaag gcgcgcaact
      121 ccgggatcgt gtccggccgc accgacaggc ccgcggccat ggcgtggccg ccgcccgcca
      181 gcagcaggcc ttcgtcataa gctgcctgca ccgcgcggcc gaggttcacc cccggctgcg
      241 agcggccgga gcctttgccg acattggcgg cgcgatcgac gcccaccacc accacgggct
      301 tgcggtattt ctcgcgcaga cgcccggcca cgatcccgat caccccggga tgccaatcgt
      361 cctgcgccac cagcagcatc ggcgcgtcgg cctgattgct ctcggtctcg atatgagcga
      421 tcgccgcctc ggtgacctcg cgctccacct ccttgcgcga ggcgttgagc gcatccagct
      481 cctcggcgag ccccctcgcc tcctcgggat cgtcggtgga aagcagccgc gcgcctaggt
      541 ccgcccgtcc gatccggccg ccggcgttga tccgcggccc caggatgaag cccacatgga
      601 agaccgaggc cggcccctga cttttcgcca cgtccagcaa ggccttcagg ccgggattgc
      661 gccagcccga catgactttc aggccctggg ccgccagcgc acggttgaag ccccgaagtt
      721 cggtgacgtc gcatatcgcc cccatggcgg ccagatcgag ccattggcgc aggtcgggct
      781 ccgcccggtc gccgaacagg ccgcgcttgc gggcctctcg attcagggcc gccagcagga
      841 cgaaagtcac gccggccgcg gccagatgtc cctggcccga ggtgtcgtcg gggcggttgg
      901 ggttcacaag ggcggcgacg tgggggattt cctcaccgcg catcaggtgg tggtcgatca
      961 ccaccacctc caggccgatc tcggcggcgc aggccagcgc atcgtgcgca gcggccccgc
     1021 agtcgacggt gatcaccagc tccgcgccct cggctttcag gcgccgaaac gcggccggcg
     1081 acgggccgta gccctcaagg atgcggtcag ggacgtagat cggcaggtcg tggcccagcg
     1141 cccggaacca gcgcaccagc tgggcggccg aggacgcgcc gtccacatca tagtcggcga
     1201 acaccacgag cggacgtttt cgctccagcg cgtccaccag gatcgcggcg gccttgtcca
     1261 tgtccgtgaa ggtcgaggga tcggggaaca gcgccttcag cgtcgggttg agataggtct
     1321 cgccctgctc ggcaaggacg ccgcgggcgg ccagggcgcg ggccaggggc tcggagaggc
     1381 catggttcag ctgatggcgg cgcaccagct ccggatcggc cgctcgctca cgccacagcc
     1441 gcccggaaag cgagcgggtg acgccgagat agcctagctg ggggctccca tccgccaagt
     1501 gtcgctcccg aggctccaag ccccgcacta tcggcccccg gcgcgcgagt cgccagcggt
     1561 cagaggcgtc ccggatagtc gcaaggtgcg tcaaatacgg tcgcaacccg ccggagcggt
     1621 ggcggccatc cccgaccttg caaaggcggc caaagcctag gccaaatggc ggccaatcaa
     1681 gagcctctgg ggagcagacg atgaccgctt atgacgctgt ggacggtagc cgccttgggc
     1741 cgagcgggat cacgcggcgc gggatgctgg gcgcggcggc cgggaccgcg gcgctgctgg
     1801 ccgggccggc gttcgcggcc cgaaagcttt cagccagcga cagggtcaat atcgcggtca
     1861 tcggggcggg cggccagggc gcgtccaaca tgtccaagct gacaagccag aacatcgtgg
     1921 ccacggccga cgtggactac gaccacgtgc tgcacgcgct ggtggacaag accggctgga
     1981 tcagcccgtc taaggagccg ctgaaggcgg cctacgacaa ggccgcgcgc tacaccgact
     2041 accgcaagat gttcgacgct cagaaggaca ttgacgcggt cctgatcgcg acaccggacc
     2101 atcaccacgc cgtggccgcg cgttgggcga tggagcgcgg ctaccacgtc ttcgtgcaga
     2161 aacccctgac ctacaacatc accgagagcc gcaagctcgc gtcgctggcg gcggccaatc
     2221 cgaacatgat cacccagatg ggcaaccagg gccattcggg cgacgatggg cggcgcgtga
     2281 tcgagctgat ccgcggcggg gtgatcgggc ccgtccacga agtccacgtc tggaccaacc
     2341 gaccggtgtg gccgcaaggc gtgcaaaagc ctgcggccgt cggggcgcca gggagcctgg
     2401 ac
//
LOCUS       DATAJL010000709         4282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62492,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000709 DATAJL010000000
VERSION     DATAJL010000709.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4282
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62492"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1501
                     /locus_tag="VHN39_13530"
     CDS             <1..1501
                     /locus_tag="VHN39_13530"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX2817413.1"
                     /translation="EVGVRKALGAQRKDLVIQFMGEAMIYVVVALVLAVALAELLLPA
                     VSAALQRKIAFNYLTDPQLLLVMIGVTVVTALLAGLYPALVLSSFRPSSVLKGGPIAA
                     AGGGGVRQVLVVAQFAVLVALLFAALTIYRQTAFALRDASHTNTDQVLMLFASPCSDA
                     LRDAVRAVPGVQRAACSSVAAVGLGSSADMSIANGRKAMLGSTSVDFDFFEVYGIKPV
                     VGRLPDEARPGDDGGKLGEHSPPIVLNETAVRELGFKSPQAAVGQLVTWHFAPHFSME
                     HMTDPGPAQASEVIGVVPDFTFGSVRQKVPSTFFYVGPKTDMLNSVALNIKLNAAHPA
                     ETVKQIDKVWAKMSGGMPLQEYFANQFLLIKNYIDNVIQGGFIAVCALIAVSIACLGL
                     FALSAYTAERRTKEIGIRKAMGATSSDILRLLLWQFAKPVLWANLLALPLAWLAMDYW
                     LKGFAYHVDQPPWTFLAAAGAGLVIAWATVFFHALRVARARPVGALRYE"
     gene            1494..1940
                     /locus_tag="VHN39_13535"
     CDS             1494..1940
                     /locus_tag="VHN39_13535"
                     /inference="COORDINATES: protein motif:HMM:NF021438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2147 domain-containing protein"
                     /protein_id="HEX2817414.1"
                     /translation="MNRTIVWAAGLLAAALVMAHEARAADPVFGVWLTQAKDGTVRIA
                     PCAGNSAETCGVVLSGKGPNGEDARTLTDIKNPEPALRGHPIVGLQVITGFRRNGEGG
                     WTGGRIYEPQTGHTFKAKMASGGPNALKVAGCFLFFCRSETWTRVE"
     gene            complement(1946..2308)
                     /locus_tag="VHN39_13540"
     CDS             complement(1946..2308)
                     /locus_tag="VHN39_13540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2817415.1"
                     /translation="MTAPEDAIRARRRLTNKLIAAREAQRLRPFFRADARLITGDGRL
                     ILGADAVVEAFAAQFREPGFAPYVRTPDTVELDAAGGRAAESGLWTGNGQSGAYMAAW
                     RKVTGQWVIESELFVTLA"
     gene            complement(2315..2965)
                     /locus_tag="VHN39_13545"
     CDS             complement(2315..2965)
                     /locus_tag="VHN39_13545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2817416.1"
                     /translation="MPEVVLTGAAGRIEGRYSQGKTETAPVALILHPHPKAGGQMNNP
                     VTVQLYHLFMKRGFSVLRFNFRGVGRSQGEFDSGIGELADAATALDWLQSTNPAASQC
                     WVAGYSFGAWVGMQLLMRRPETDGFISVSPPTNAYDFSFLAPCPASGLILHGGNDSVV
                     PPIEVERVVSKLRTQKGIVIDYDVVEGATHFWMENLPDVEQRVGAYLDKRLAADPA"
     gene            3158..3595
                     /locus_tag="VHN39_13550"
     CDS             3158..3595
                     /locus_tag="VHN39_13550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEX2817417.1"
                     /translation="MRLSTKGRYAVMAMADLARRQDEPCRAVALAEIASRQEISLSYL
                     EQLFARLRRKGLVQSARGPGGGYRLSRAAAETTIADIVHAVDEPIRATRCAVKGKGCM
                     LKGERCLTHDLWEHLGDRIEDYLASVSLADVISGRLRASRQAA"
     gene            3592..>4282
                     /locus_tag="VHN39_13555"
     CDS             3592..>4282
                     /locus_tag="VHN39_13555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX2817418.1"
                     /translation="MITYLDHNATGVVRPDAKAAMARALDVGGNPSSIHAAGRAARAL
                     VETAREQVAALIAAPAATIIFTSGGTEANAIAIESAVAAGSRRLIVSAIEHDSVQETS
                     RVLGVAVEALPVDANGQADLAWLGARLAAWDPADGKPFVALMLANNETGVIQPVAEAA
                     ELVRAADGWLHVDAIQAAGKIAVDSRALGADTLSISAHKIGGPQGVGALTFGPRATLS
                     RRQHGGGQERGR"
BASE COUNT          652 a         1505 c         1434 g          691 t
ORIGIN      
        1 ggaggtgggt gtgcgcaagg cgctgggcgc tcaacgcaag gacctcgtca tccagttcat
       61 gggggaggcg atgatctacg tcgtcgtcgc cctggtcctg gccgtcgcct tggccgaact
      121 gctgctgcct gcggtcagcg ccgcccttca gcgcaagatc gccttcaact acctcaccga
      181 cccgcagctt ctgctcgtca tgatcggcgt caccgtcgtc accgcgctcc tcgcgggact
      241 ttatccggct ctggtcctgt cgtcgttcag gccgtcctcg gttctgaagg gcggtccgat
      301 cgctgcggcg ggcggcgggg gcgttcggca ggtgctggtg gtggcgcaat tcgccgtgct
      361 ggtcgcgctg ctcttcgcgg cgctgaccat ctaccggcag accgccttcg ccctgcggga
      421 cgccagccat accaacaccg accaggtgct gatgctgttc gcctcgcctt gctccgatgc
      481 gttgcgagac gccgtccgcg cggtccctgg cgtccagcgc gcagcctgtt cgtcggtggc
      541 ggctgtcggc ctgggctcta gcgccgatat gagcattgcc aatggccgca aggcgatgct
      601 tggctcgacg tcggtcgatt tcgatttctt cgaggtctac gggatcaagc cggttgtcgg
      661 gcgactaccc gacgaggccc ggccaggaga cgacggcggc aagctcgggg aacattcgcc
      721 gcccatcgtg ctgaacgaaa ccgcggtgcg cgaacttggg ttcaagtcac cgcaggcggc
      781 ggtcggccaa ctggtgacct ggcacttcgc tccgcacttc tccatggagc acatgactga
      841 cccggggcct gcccaggcct cggaggtgat cggggtggtg cccgacttca ccttcggctc
      901 cgtccgccag aaggtgccca gcaccttctt ctatgtcggc ccgaagaccg acatgctcaa
      961 ttcggtcgca ctcaacatca aactcaacgc cgcccatccc gccgaaaccg tgaagcagat
     1021 cgacaaggtc tgggcgaaga tgagcggcgg catgcctctg caggagtatt tcgccaacca
     1081 attcctgctg atcaagaact acatcgacaa cgtcatccag gggggcttca tcgccgtctg
     1141 cgccctgatc gcggtgtcca tcgcctgcct cggcctcttc gcgctctcgg cctatactgc
     1201 cgagcgacgg accaaggaga tcgggatccg caaagccatg ggcgccactt catccgacat
     1261 cctgcggctg ctgctctggc agttcgccaa gccggtgctc tgggccaatc tcctggccct
     1321 gccgctggcc tggctcgcca tggactactg gctgaagggc ttcgcctatc acgtcgacca
     1381 gccgccctgg accttcctgg ccgcggccgg cgccggcctg gtcatcgcct gggcgacggt
     1441 gttcttccac gctctgcgcg tcgcccgtgc tcggccggtg ggagcccttc gttatgaata
     1501 ggacgatcgt ctgggccgcg gggctgttgg ccgcggccct ggtgatggcg cacgaagccc
     1561 gggccgccga tccggtgttc ggcgtctggc tgacccaggc caaggacggc acggtgcgga
     1621 tcgcgccctg tgcgggcaat tcggcggaga cttgtggcgt ggtgctgtcc ggcaaggggc
     1681 cgaatggcga ggacgcgcgc acgctgaccg acatcaagaa tccggagccc gcgctgcgcg
     1741 gccaccccat cgtcgggctg caggtgatca cgggcttccg gcgcaacggc gagggcggct
     1801 ggaccggcgg tcggatctac gagccgcaga ccggacacac cttcaaggcc aagatggcga
     1861 gtggcggacc gaacgcgctc aaggtcgcgg gttgcttcct gttcttctgc cggtcggaga
     1921 cctggacgcg ggtcgagtag ccggctcagg ccagggtgac gaagagctcg ctttcgatca
     1981 cccactggcc ggtgaccttg cgccaggccg ccatgtaggc gccggactgg ccattgccgg
     2041 tccacagccc gctctccgcg gcgcggcctc ccgcagcgtc cagctccacg gtgtctggcg
     2101 tgcgcacata gggcgcaaac cctggctccc ggaactgcgc ggcgaaggcc tcgacgacgg
     2161 cgtccgcgcc caggatcagc cgaccgtcgc cggtaatcag ccgcgcgtcg gcccggaaga
     2221 acggccgcag ccgctgggcc tcccgcgcgg caatcagctt gttggtcaga cgccgccgcg
     2281 cccggatggc gtcttccggg gcggtcatgg cgcgctaggc ggggtcggcg gccaagcgct
     2341 tgtcgaggta ggcgcccacg cgctgttcca cgtccggcag gttctccatc cagaagtggg
     2401 tcgcgccctc gaccacgtca tagtcgatga cgatgccctt ctgggtgcgg agcttggaga
     2461 ccacgcgctc cacctcgatc ggcggcacga cgctgtcatt gccgccgtgc aggatcaggc
     2521 ctgacgccgg gcagggggcg aggaaggaga aatcataggc attggtcggc ggcgagaccg
     2581 agatgaagcc gtccgtctcg gggcgccgca tcaggagctg catgcccacc caggcgccga
     2641 agctgtagcc cgcgacccag cactgggagg cggccggatt ggtggactgc agccagtcga
     2701 gcgcggtggc ggcgtccgcc agctcgccga tgcctgagtc gaactcgccc tggctgcggc
     2761 cgactccgcg gaagttgaac cgcaggaccg agaagccgcg cttcatgaac agatgataga
     2821 gctggacggt gaccggattg ttcatctggc cgccagcctt ggggtgcgga tgcaggatca
     2881 gcgcgacggg cgcagtctcc gtcttgccct gcgaataacg gccttcgatc cgtccggccg
     2941 ctccggtcag caccacttca ggcatcagaa ccctttcaga tcggcccggc ttataggacc
     3001 tggaatactt gactactgcg ctgggtcttc ctaagtcgca acccacccgg tcggaccgag
     3061 cccgcgcaag gcggcggcct ataacatagc gccgctgcgg aacgcgagaa aactgcgccg
     3121 ataagccgga atggcaaact ggattggacc gcagcccatg cgtctctcca ccaaaggccg
     3181 ctatgccgtg atggccatgg ccgacctggc ccggcgccag gatgagccct gccgcgcggt
     3241 tgcgctcgcc gagatcgcca gccgccagga gatctctctc tcctacctgg aacagctctt
     3301 cgcgcgcctg cgccgcaagg ggctggtgca gtcggcccgg ggacccggcg gcggctatcg
     3361 cctgagccgc gcggccgccg agaccaccat cgccgacatc gtccatgccg tggacgagcc
     3421 gatccgcgcc acgcgctgcg ccgtcaaggg caagggctgc atgctgaagg gtgagcgctg
     3481 cctgacccat gacctctggg aacacctggg cgaccggatc gaggactatc tggcctcggt
     3541 cagcctggcc gacgtgatct cggggcgcct gcgcgccagc cggcaggccg catgatcacc
     3601 tatctcgacc ataacgcgac gggcgtggtg cgaccggatg ccaaggccgc catggcgcgc
     3661 gccctggacg tgggcggcaa cccctcctcg atccacgcgg ccggccgcgc cgcccgcgcc
     3721 ctggtcgaga cggctcgtga gcaggtcgcg gccctgatcg cggcgccggc tgccaccatc
     3781 atcttcacct cgggcggcac cgaggccaac gccatcgcaa tcgaaagcgc cgtggccgcc
     3841 ggctcgcgcc ggctgatcgt ctcggccatc gagcacgaca gcgtccagga gacctcccgc
     3901 gtgctcgggg tcgccgtcga ggcgttgccg gtcgacgcca acggccaggc cgacctcgcc
     3961 tggctgggcg cgcgcctggc cgcctgggac cctgccgacg gcaagccctt cgtggccctg
     4021 atgctggcca acaatgagac tggcgtcatc cagccggtgg ccgaggccgc cgagctggtc
     4081 cgcgcagccg acggctggct gcacgtcgac gccatccagg ccgccggcaa gatcgccgtc
     4141 gacagccgcg cgctcggagc cgacacgctc tccatctccg cccacaagat cggcgggccg
     4201 cagggcgtcg gcgccctgac cttcggcccc cgcgccaccc tctcgcgtcg ccagcacggc
     4261 ggcggccagg agcgcggacg cc
//
LOCUS       DATAJL010000710         1958 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38594,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000710 DATAJL010000000
VERSION     DATAJL010000710.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38594"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1437)
                     /gene="ilvB"
                     /locus_tag="VHN39_13560"
     CDS             complement(<1..1437)
                     /gene="ilvB"
                     /locus_tag="VHN39_13560"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEX2817419.1"
                     /translation="MTAHSPTIEAEATVTLSGAEMVVRALIDQGVDVLFGYPGGAVLP
                     IYDALFAEPRLKHVLVRHEQGATHAAEGYARSTGKPGVVLVTSGPGATNAVTGIVDAL
                     MDSIPLIVITGQVATHLIGTDAFQECDTIGITRPCTKHNYLVKDVADLPRILHEAFHI
                     ATSGRPGPVVIDIPKDVQFAKGAYQGPAEVKHVHNYNPRTKGDPGRIAEAAAMIAKAR
                     RPILYTGGGVINAGPEAAKLLRELAALTGAPVTSTLMGLGAFPASDPQWLGMLGMHGS
                     YEANNAMHDCDVMVAIGARFDDRVTGRLDAFSPGSRKIHIDIDASSIGKNVRADIGIV
                     GDAGSVMADLIDVWKAKNYGLDQRALTDWWKQIDTWRARKGFAYAPDAKLIKPQYAIQ
                     RLYELTKNEDVYITTEVGQHQMWAAQFFHFDEPNRWMTSGGLGTMGYGLPAAVGVQMA
                     HPNSLVIDIAGDASVQMTMQEMSTAVQHD"
     gene            complement(1606..>1958)
                     /locus_tag="VHN39_13565"
     CDS             complement(1606..>1958)
                     /locus_tag="VHN39_13565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEX2817420.1"
                     /translation="VALEPPRAALYARCDARLAAMVEAGALEEVRALAARDLDPALPI
                     MKAVGVREFSAHLRGETTRAEALAAAQQETRRYAKRQTTWMRGQMAEWPRLTEINAEG
                     QWRQFLALNPGLTP"
BASE COUNT          295 a          600 c          718 g          345 t
ORIGIN      
        1 gtcgtgctga accgccgtcg acatctcctg catggtcatc tggaccgagg cgtcgccggc
       61 gatgtcgatg accaggctgt tcgggtgggc catctgcacg ccgaccgcgg ccggcaggcc
      121 atagcccatg gtgcccaggc ccccggaggt catccagcgg ttgggctcgt cgaagtggaa
      181 gaactgcgcg gcccacatct ggtgctggcc gacctcggtg gtgatgtaga cgtcctcgtt
      241 cttggtcagc tcataaagcc gctggatggc gtactgcggc ttgatcagct tggcgtccgg
      301 cgcataggcg aagcccttgc gggcgcgcca agtgtcgatt tgcttccacc agtcggtgag
      361 cgcgcgctga tccagcccat agttcttggc tttccaaaca tcgatcaggt cggccatcac
      421 cgagcccgca tcgccgacga tcccgatgtc ggcgcgcacg ttcttgccga tggaagatgc
      481 gtcgatgtcg atgtggatct tgcgcgagcc gggggagaag gcgtcgaggc gcccggtgac
      541 ccggtcgtcg aaccgcgcgc cgatggccac catgacgtcg cagtcgtgca tggcgttgtt
      601 ggcttcgtac gagccatgca tccccagcat ccccagccac tggggatcgg acgccgggaa
      661 ggcgcccagg cccatcaggg tcgaggtgac cggcgcgccg gtcagcgccg ccagttcgcg
      721 caagagcttc gcggcttcgg ggccggcgtt gatcacgccg ccgccggtgt agagaatcgg
      781 ccggcgcgcc ttggcgatca tggcggcggc ctcggcgatg cggccggggt cgcctttggt
      841 gcgggggttg tagttgtgga cgtgcttgac ctcggccggg ccctggtagg cgcccttggc
      901 gaactgcacg tccttgggga tgtcgatgac caccgggccc gggcggcctg acgtggcgat
      961 gtggaaggcc tcgtgcagga tgcgcggcag gtcggccacg tccttcacca ggtagttgtg
     1021 cttggtgcag ggccgcgtga tgccgatggt gtcgcattcc tggaaggcgt cggtgccgat
     1081 caggtgggtg gcgacctggc cggtgatgac gatcagcgga atggaatcca tcagggcgtc
     1141 gacgatgccg gtcaccgcat tggtggcgcc ggggccggag gtgaccagca cgacgccggg
     1201 ctttccggtc gagcgcgcgt agccttccgc ggcatgggtc gccccctgtt cgtggcggac
     1261 cagaacgtgc ttgaggcgcg gctcggcgaa gagcgcgtca tagatcggca ggaccgcgcc
     1321 gcccggatag ccgaacagca catcgacgcc ctggtcgata agcgcgcgca cgaccatttc
     1381 ggcgcccgag agggtgacgg tggcttcggc ttcgatggtc ggactatggg cggtcatggg
     1441 tgggctcgag tttgggcaat aaaaaaggcc ctcggggggc ctggtgcaag cgaccgttga
     1501 cggaactgac cgatgtcagc ccgctgcggg tcgccttacg agtacaagaa tggtgcgcac
     1561 gagaattccc tggaacgatt ggatgaggcg tttcgcatgc tgcgcctagg gcgtcaaccc
     1621 agggttaaga gcaagaaact gcctccattg cccctcggcg ttaatttcag tgaggcgtgg
     1681 ccattcggcc atctggccgc gcatccaggt ggtctggcgc ttggcgtagc ggcgggtttc
     1741 ctgctgggcg gcggccagcg cctcggcccg cgtggtctcg ccgcgcaggt gggcagagaa
     1801 ctcgcggacg ccgacggctt tcatgatggg aagcgcgggg tcaaggtcgc gggcggcgag
     1861 cgcgcggacc tcctccaagg cgccggcctc gaccatcgcc gccaggcggg cgtcgcagcg
     1921 agcgtagagc gctgcgcgcg gcggttccag ggccacgc
//
LOCUS       DATAJL010000711         1736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51346,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000711 DATAJL010000000
VERSION     DATAJL010000711.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51346"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..1138)
                     /locus_tag="VHN39_13570"
     CDS             complement(65..1138)
                     /locus_tag="VHN39_13570"
                     /EC_number="1.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEX2817421.1"
                     /translation="MNKPVNAPAAADAQETPGTGTARMNMIQAINSAMDVMLARDPDV
                     LVFGEDVGYFGGVFRATEGLQKKHGLNRCFDTPITEAGLIGVAVGMAAYGLRPCVEIQ
                     FADYIYPGFDQIVSEAARLRYRSAGDFWCPMTIRSPYGGGIFGGQTHSQSPEALFTHI
                     AGVKTVIPSTPYDAKGLLIAAIEDDDPVVIFEPKRLYNGPFNGDPETPVTPWQKIEGN
                     DVPVGHYTVPLGKARVARAGSDVTVLAYGTMVHVAVAAAEATGVDAEVVDLRTLSPVD
                     IDAITASVKKTGRCVIVHEATRTSGFGAELSALVQEACFYQLESPIERVTGWDTPYPH
                     AFEWEYFPGQKRVGAALKRVMEA"
     gene            complement(1141..>1736)
                     /locus_tag="VHN39_13575"
     CDS             complement(1141..>1736)
                     /locus_tag="VHN39_13575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008263721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016624 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, disulfide as
                     acceptor [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX2817422.1"
                     /translation="GSTAEGDFHHALTFASVYRAPVILNIVNNQWAISSFQGIAGGED
                     APFASRAIGYNLPSLRVDGNDFLAVYAATQWAAERARSNLGATVIEHFTYRAEGHSTS
                     DDPGRYRPAEEAKLWPLGDPVERLKDHLIRLGEWSDEAQQAQHEELVELVRAAGKESE
                     THGTLHDGDRPSVKTMFEDGYKEMDWRLIRQRQELGV"
BASE COUNT          259 a          572 c          598 g          307 t
ORIGIN      
        1 cgtcaaggtg ggcgatgtcc tcgccgaggt cgggcagttt gaagacgaaa cgtcccacgg
       61 ctctttacgc ctccatcacg cgcttcaggg ccgcgccaac ccgcttctgg cccgggaagt
      121 actcccattc aaaggcgtgt ggatatgggg tgtcccatcc ggtgacccgc tcgatgggtg
      181 attccagttg gtagaagcag gcctcctgga cgagggccga gagctcggcg ccgaagccgg
      241 aggtccgggt cgcctcgtgg acgatgacgc agcggccggt cttcttcacc gaggcggtga
      301 tggcgtcgat gtcgaccggc gagagcgtgc gtagatcgac cacctcggcg tcgacccccg
      361 tcgcctcggc cgccgccacc gccacgtgca ccatggtgcc gtaggccagc acggtgacgt
      421 ccgatccggc gcgcgcgacg cgggccttgc cgagcggcac ggtgtagtgg ccgaccggca
      481 cgtcattgcc ttcgatcttc tgccaggggg tcaccggcgt ttccggatcg ccgttgaagg
      541 gcccgttgta gagccgcttc ggctcgaaga tcaccaccgg gtcgtcgtcc tcgatcgccg
      601 cgatcagcag gcctttcgcg tcgtagggcg tggacgggat caccgtcttg acgccggcga
      661 tgtgggtgaa cagcgcctcg gggctctggc tgtgggtctg gccgccgaag atgccgccgc
      721 cgtaggggct gcggatggtc atcgggcacc agaagtcgcc cgccgagcgg tagcgcagcc
      781 gcgcggcctc cgaaacgatc tggtcgaaac cgggatagat gtagtcggcg aactggatct
      841 ccacgcaggg gcgcaggcca taggccgcca tgccgaccgc gacgccgatc agaccggcct
      901 cggtgatcgg agtgtcgaaa cagcggttca ggccatgctt cttctgcagg ccctcggtgg
      961 cgcggaacac gccgccgaaa tagcccacgt cttcgccgaa cacgagcacg tcggggtcgc
     1021 gggccagcat cacgtccatg gccgagttga tggcctggat catgttcatc ctggccgtcc
     1081 cggtcccggg agtctcttgg gcgtcggcgg cggccggggc gttcacgggc ttgttcatcg
     1141 tcagaccccc agttcctgcc gctgccggat caggcgccag tccatttcct tgtagccgtc
     1201 ctcgaacatg gttttgacgc tggggcggtc gccgtcgtgc agggtgccgt gggtctccga
     1261 ctccttgccc gcggcgcgga ccagttcaac caactcttcg tgctgcgcct gctgtgcctc
     1321 gtccgaccat tcaccgagcc ggatcaggtg atccttgagc cgttcgacag ggtcgcccag
     1381 cggccacagc ttggcctcct cggcgggccg ataacggccg ggatcgtccg aggtggagtg
     1441 gccctcggcc cggtaggtga aatgctcgat caccgtcgcg cccaggttgg agcgcgcgcg
     1501 ctccgccgcc cactgggtcg ccgcatagac cgccaggaag tcgttcccgt ccacccggag
     1561 tgagggcagg ttgtatccga tggcccgtga cgcgaacggc gcatcctctc cgccggcgat
     1621 cccctggaag gacgagatgg cccactggtt gttgacgatg ttgaggatca ccggcgcgcg
     1681 gtagaccgag gcgaaggtca gcgcgtggtg gaaatcgcct tccgcggtcg agccgt
//
LOCUS       DATAJL010000712         1776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38632,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000712 DATAJL010000000
VERSION     DATAJL010000712.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38632"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..1025)
                     /locus_tag="VHN39_13580"
     CDS             complement(51..1025)
                     /locus_tag="VHN39_13580"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HWE histidine kinase domain-containing protein"
                     /protein_id="HEX2817423.1"
                     /translation="MSPSKPPGPSYEARLEAVLESVSDAFYALDTDWRYVVFNRAAEV
                     YFGVGRKAMLGRDMWERFPQGLGTPFEGYCRAAMDQGVSTTFETTSRLRPDRVVELRI
                     VPMRGGGVAITLTDITERKTADARQRLLVNELNHRVKNSLATVQAIAAQSLRGPDVSP
                     EARERFMARLMALASANDVLVARTWSGATLHSVAAQMARPHGDDERFTIEGPDVHLAP
                     PTATAMALGLHELATNAAKYGALSSPEGRVSLTWAVDGEAKARRLRLTWRESGGPAVA
                     APGPSGFGTRLIERGLTAELRAEVKLAFEATGVVFTLAAPLSESLREG"
     gene            1432..>1776
                     /locus_tag="VHN39_13585"
     CDS             1432..>1776
                     /locus_tag="VHN39_13585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817424.1"
                     /translation="MFEGNQLGPVWNDLIARLTANPEDAGAMLDLSTLLQMRGDREGG
                     LKLQASALALARAYRTTHGAGGGLRILAFLTAGDLMTNTPLDFMLEGSDVELTTWYVD
                     GAVPTPAELPEHD"
BASE COUNT          281 a          671 c          566 g          258 t
ORIGIN      
        1 gtcatggact cagttgcggc gcttgagacg gcggcgtcaa tttctacccc tcagccttcg
       61 cgcaggctct cgctcagcgg ggcggccagg gtgaacacca cgccggtcgc ctcgaacgcc
      121 agcttcacct cggcgcgcag ctcggcggtc agaccccgct cgatcagccg ggtgccgaag
      181 ccggagggtc caggcgcggc caccgcaggc ccgccgctct cgcgccaggt caggcgcaga
      241 cgccgcgcct tggcctctcc gtccacggcc caggtcagcg acacccgacc ctccggcgac
      301 gacagcgccc cgtacttcgc cgcgttggtg gccagctcgt gcaggcccag cgccatggcg
      361 gtcgcggtcg gcggtgcgag gtgcacgtcg gggccctcga tcgtgaaccg ctcgtcgtca
      421 ccgtgcggcc gggccatctg ggcggccacc gagtgcaggg tcgccccgct ccaggtccgc
      481 gccaccagga catcgttggc gctggccagc gccatcagcc gcgccatgaa ccgctcgcgc
      541 gcctcaggcg acacgtcggg cccgcgcagg ctctgggcgg cgatcgcctg caccgtggcc
      601 aggctgttct tcacccggtg attgagttcg ttgaccagca gccgctggcg cgcatcggcg
      661 gtcttgcgct cggtgatgtc agtgagcgtg atcgccacgc ccccgccgcg catcggcacg
      721 atcctcagtt ccaccacccg gtcgggccgc agtcgcgagg tcgtctcgaa ggtcgtcgag
      781 accccctggt ccatcgccgc gcggcagtag ccctcgaagg gcgtgcccaa cccttgcggg
      841 aaccgctccc acatgtcccg gcccagcatc gccttgcggc caacgccgaa atacacctcc
      901 gcagcgcggt tgaagaccac gtagcgccag tcggtgtcca aggcgtagaa ggcgtcgctg
      961 acgctctcga gcaccgcctc gagacgggct tcgtaactgg gacctggcgg cttggatggg
     1021 gacattaggg ctcgtagcga aagctcagcc acaaccctag caggcatcag gcggcgcgga
     1081 accccgccca acctcgaccg accccggggc ccgcaaggtg tgcgacgacg gccaggaccg
     1141 cgctcaacct gaggtaggtc tggcgcaacg aaaagccgcg gtgttaacca accaacaacc
     1201 cataaacgtc ttcactggcc gcacggtaga tctcagtcac gccggggggc tcataacgcg
     1261 cccagaccgg cccccaatcg cgttcgcatc gttcccagga ttcccatgcc gcaccagaca
     1321 gcagccgccg catcggaagc cctgcgcccc gcaacgcctg ctacgagccc ccatcctgct
     1381 gcgagccccc atcctgctac gagcctgggc ctcgccttcc tggggcgcct cgtgttcgag
     1441 gggaaccagt tgggacccgt ctggaacgac cttatcgcgc ggctgaccgc caatcccgaa
     1501 gacgccggcg cgatgctgga cctgtcgacg ctcctgcaga tgcgcggcga ccgcgagggc
     1561 ggcctgaagc tgcaggcctc ggcgctggcg ctggcgcgcg cctaccgcac cacccacggc
     1621 gcgggcggag gcttgcggat cctggccttt ctgaccgccg gggacctgat gaccaacacc
     1681 ccgctcgact tcatgctgga aggctccgac gtcgaattga ccacatggta tgtggacggc
     1741 gccgtcccca cgcctgccga actccccgag cacgac
//
LOCUS       DATAJL010000713         2087 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_51368,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000713 DATAJL010000000
VERSION     DATAJL010000713.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_51368"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            225..1247
                     /locus_tag="VHN39_13590"
     CDS             225..1247
                     /locus_tag="VHN39_13590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009867220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX2817425.1"
                     /translation="MNTTTIGLDLAKNVFQVHGIDAAGQVTVRRKLRRSEMLRFFEAL
                     TPCLVGMEACATAHYWARELSSLGHEVRLMAPSYVKAYVRRQKNDAADAEAICEAVTR
                     PTMRFVPVKSAERQSVLVLHRTRELLVRQRTMLINAIRGHCAEFGLIAPQGARRAVEL
                     VEQLRRPEASVLPDLARSVLLMMADQLAALAAQIHALERRLLAWHRQDQASQRLATIP
                     GVGIITATALSASVPDPSLFHSGREFAAFLGLVPRQNSSGGKDRLGRISKMGDRYLRK
                     LLVVGATSVMRRARTGALAAAPWIRSLLERRPARVVTVAMANKTARIAWAVLARGEVY
                     RAPAMA"
     gene            complement(1658..>2087)
                     /locus_tag="VHN39_13595"
     CDS             complement(1658..>2087)
                     /locus_tag="VHN39_13595"
                     /inference="COORDINATES: protein motif:HMM:NF012888.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfotransferase domain-containing protein"
                     /protein_id="HEX2817426.1"
                     /translation="YLDFLDGREWAGFEGNSFWDHTQGWWDARHLPNVLMVHFANLKA
                     DLLGQVRRIAAFLNVAPSEETLARIVDHCEIGYMREQARPAMAESAWTEGADTFFHNG
                     TNGRWRDVLTPEEIARCDALAARRLSADCAHWLKTGDMGR"
BASE COUNT          370 a          690 c          668 g          359 t
ORIGIN      
        1 gctgccaccg tgcaaacgaa tgggacgacg agatccgggt cgaggcaaga ggcaaaagcg
       61 gcgaaatgat catgggataa cgccagctcg ggtttgggct cgctgcgtcc ggccggagac
      121 gagttgccgt tggactgatg gggtggacgg cccctgtgtc cggcgtccga gcgccataag
      181 gtgggtcgtt gttgaagcaa ccccttaggc aggagccgtc caccatgaat actaccacga
      241 tcggtctgga tctcgcgaag aacgtctttc aagtccacgg catcgacgcc gccggccagg
      301 tcacggtcag gaggaagctg cggcggtcgg agatgctaag gttcttcgaa gccctcacac
      361 catgcctggt cggcatggag gcgtgcgcca cggcgcatta ctgggcgagg gagttgtctt
      421 cgctgggcca cgaggttcgg ctgatggcgc cgtcctacgt gaaggcctat gtgcgccggc
      481 aaaagaacga cgctgccgac gccgaggcca tctgcgaagc ggtgacgcgt ccgaccatgc
      541 gcttcgtgcc cgtcaagagc gctgagcgcc agagcgtgct ggtcctccat cggacgcgcg
      601 aactgctggt caggcaacgg accatgctga tcaacgccat ccgcggccat tgcgccgagt
      661 tcgggctcat cgccccccaa ggcgcgcgcc gcgcggtcga gctcgtcgag cagttgcgcc
      721 ggccggaggc gtcggtcctt cccgatctgg cccgatcggt cttgctgatg atggccgatc
      781 aactcgcggc tctcgccgct cagatccacg ctctcgaacg ccggcttctc gcctggcatc
      841 ggcaagacca agccagccaa cggctcgcga ccattcccgg ggtcgggatc attaccgcca
      901 cggcgctctc agcctccgtc cccgacccca gcctgttcca ctccggccgg gagttcgccg
      961 ccttcctggg tctcgtcccg cgccagaact cctccggcgg caaggaccgg ctcgggcgta
     1021 tctccaagat gggcgatcgc tatctacgca agctgctcgt cgtcggcgcc acctcggtga
     1081 tgcggcgggc ccgcaccggc gcgctcgcgg cggcgccatg gatccgatcg ctgctggagc
     1141 gccggccggc ccgcgtcgtc accgtggcca tggccaacaa gaccgcccgc atcgcctggg
     1201 ccgttctggc tcgcggcgag gtctatcgcg ctcccgccat ggcctgacca aggtcgccgc
     1261 gatcccaagc cgcggcttcg aactgtaagg gtgcacgagg gttgatgatg atctgaaacg
     1321 cggccgcgga ccaggacacc ccggggtgct gtcggagcct ttaagctcga tagactgaat
     1381 gggaccttgg ttaagcggac tccatcaggg ccagcggcca caaacgccgc gccaacaggc
     1441 cggacagatg accgcacccc gacagatcgt ctcctcaacc caaatttacc cttgcggcga
     1501 gggggccgtc cacagatgac atcaccccgc aggtgatctg tcacgagagc ctgatgcatt
     1561 tagacggaac agatctaaac gctgaatcag gctctaaact tttgaatcta gagcaggatt
     1621 caaatttcag acgattccgt ctgaaatcat cctgctccta gcgccccata tcgccagtct
     1681 tcaaccagtg cgcgcaatcg gcgctgaggc gccgcgccgc cagggcgtcg cagcgggcga
     1741 tctcttcggg tgtcaggacg tcgcgccagc ggccgttggt tccgttgtgg aagaaggtgt
     1801 ccgcgccctc cgtccatgcc gattccgcca tcgccggcct ggcctgttcg cgcatgtagc
     1861 cgatctcgca gtggtcgacg atccgcgcga gggtctcctc ggatggagcg acgttcagga
     1921 aggcggcgat gcggcgcacc tggccgagga ggtcggcctt caggttggcg aaatggacca
     1981 tcagcacatt gggcaggtgg cgggcgtccc accaaccctg ggtgtggtcc cagaaggagt
     2041 tgccctcgaa ccccgcccac tcacgtccat cgaggaagtc cagatag
//
LOCUS       DATAJL010000714         8060 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25319,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000714 DATAJL010000000
VERSION     DATAJL010000714.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8060)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8060)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8060
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25319"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..1016)
                     /locus_tag="VHN39_13600"
     CDS             complement(51..1016)
                     /locus_tag="VHN39_13600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2817427.1"
                     /translation="MRLWAWMAGLAALLVAQAAWAGNVGFERATAPAGADKPLQVGIW
                     YPTDAPEAPMALGPSSQVVALAAPVSGKNHPLIIISHGTGGSFIDHRDTAKALAQAGF
                     VVAAVSHTGDTYDDRSRTRRITERPGQLTQTLDYVTTAWRGHDAIDAQRIGAFGFSSG
                     GFTVLGAIGGEPDMSLVAGHCRQHPHFYDCATIGKLGDAPPAKAAPIAHDPRIRAAVV
                     AAPAMGFAFAPAGLAKVSVPVQLWRAEWDTVLPQPYYAEAVHGLLPKAEYHLVPRADH
                     FDFLPPCSADLAKLAPDICASNIDRAAFHKTFNAEVVRFFEKTLR"
     gene            1084..1677
                     /locus_tag="VHN39_13605"
     CDS             1084..1677
                     /locus_tag="VHN39_13605"
                     /inference="COORDINATES: protein motif:HMM:NF024701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2817428.1"
                     /translation="MSRPRYHHGDLREGLVRAARAAMEAGGPEAVSLRELAQTLGVST
                     AAPYRHFRDRRALLAAVAAEGFSELVEAYRRVRAEPGPPAVIMRNTARIYLALAFDHP
                     GMFRLMFDSDILSGEPPRSLTEPAMGAWVEFCRTLSTLDPAADERTVKRRAVTGWSTL
                     HGYVTLAQAGRLAGFMTEPLTEDDLVEAVLDKALNDG"
     gene            1785..2939
                     /locus_tag="VHN39_13610"
     CDS             1785..2939
                     /locus_tag="VHN39_13610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEX2817429.1"
                     /translation="MPASPPSAAAPTVARNALVILAVIASGATLYELAPILTPLALAL
                     FLAVMIDGFARVLEHRLPHLSRKAALPLAVLISILLFGGTAVFVAMNGTGFVTQLLAY
                     GPKLDAIIFQVATLAHVRHPPTMLSIIRGLDAGKYIGLAARAVQDFASTALFVLVYLA
                     FIIASRRGWERKAIGLFPAREERQSAVIAFLRIRDGVEQYLFVQTITGLMVAVLSWIA
                     MAAVGLHDSLFWAFLIFLAVYIPVAGGVFAGVAPPLFALVQFDGYGRAIVLFVILQLI
                     GMIIGNVIYPRMQGRSLNLDPVMILLSLAFWSAIWGLTGAFLSTPLTVMAMVILAQFD
                     GSRWISVILSADGDPQQLKNKRPNEPPDEKLPPPVKRTLAKLTRRRAKQP"
     gene            3163..8019
                     /locus_tag="VHN39_13615"
     CDS             3163..8019
                     /locus_tag="VHN39_13615"
                     /EC_number="1.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004352 - glutamate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0019551 - glutamate catabolic process to
                     2-oxoglutarate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-glutamate dehydrogenase"
                     /protein_id="HEX2817430.1"
                     /translation="MNKPPVTGALPKAVLAALKGDPAISGARAFAAQASADAAPDELP
                     ELTHAELAANLADFWRFGERRRGRGPTVRIAPVVGGKSAGLDRLEIVQDDAPFLVDSI
                     MGEIAEQGLSVRALFHPIVEVQRDRAGLRGSTGAVHRESMIQVILDPIGADREAALIA
                     GINLTLKDVRAAVDDFPEMLSLMARTQAELESHSKPARPEEIAFLSWLEAEQFVFLGA
                     RVYEYPRLKNGDYAAEEPLYQAKDGLGVLRDPARTVLRRANEPAILLGKVKDRLLTDP
                     ALTVAKSNVRSRVHRRGYMDYVGIKRYGDDDRPIGEVRFVGLFTAEAYDQPATAVPLI
                     REKVANVLRRAATVPGGHNEKRLKNIVENHPRDELFQMSEDDLLAEALGILHLYDRPR
                     VRLFERRDPFDRFASVLLFLPRDHYDSDLAARAGKILSQGYRGRVSASYPSFSDAPLA
                     RVHYIIGFTPGQHDEPDLRVLEAAITEAARTWEDRFEAAVRSGERPMQDVADILTRYS
                     DAFPAGYRDRFEPAEALADLAVIDGLAPGQGVCVRAYRSAADSPLQFRFKLYRPGAPA
                     HLSDVLPILESMGLKALAEAGFPVTRAGQPTVWVHDFEVEDPNGADLVFADLKGVFED
                     AVVAVWTGRTENDGFNRLVLELSIPWRDAALIRAFARHRQQSGLDPSQRVQEEALSAH
                     PDVARLILTLFQTKFDPASKTSVDARRDQADRVMVQIVDALQAVESLDEDRVLRRIAL
                     LVQAMQRTNFYQPGAGGPKPYISFKVASGELADLPAPKPYREIFVWGVNVEGVHLRFG
                     PVARGGLRWSDRRDDFRTEVLGLVKAQQVKNAVIVPVGSKGGFYPKQLPKGGARAEVQ
                     AEGINAYKTFLSGLLDITDNLSPDGKVIPPEQVIAFDGDDPYLVVAADKGTATFSDIA
                     NGMAEAYGFWLGDAFASGGSAGYDHKVMGITARGAWEAVKRHFRELGKDIQAEPFTVV
                     GCGDMSGDVFGNGMLLSKQTRLLAAFDHRHIFLDPDPDPAKSWTERARMFALPTSSWA
                     DYDKKLISKGGGIFPRTLKSIPISAQVKAMLEIKADALPPTDLINAILKSQAELLYLG
                     GIGTYVKAQREANADVGDKGNDAVRINGCELRVKVVGEGANLGLTQAGRIEYAQMGAS
                     GAGGRIDTDAIDNSAGVDTSDHEVNIKILTGMLERTGELTRNRRDTLLQSMTDEIAEH
                     VLAHNYDQTLALSLLEMDAAGELGPTAQFMADLESRGRLDRVVEGLPDAAGIAERAQA
                     GKGLTRPELAVLLAYGKLELKREIVATDAPDDPFFERLLEDYFPRPMRKWAEPMRRHR
                     LRRDIIATVVANDVINRCGPSFPARLMPAAGADARAFAAGYEAAKQVMGIPVLWDAVA
                     ALDGKAPATGQMALFRRLSAALRGATFWLARRAARDKLDVDALVTAYGPSFQALLKLM
                     PAILSPIEQAAVETRVRLLTEAGAPLDKARAVAVLQPMTIAGDLVDLAEASSWPLPNV
                     ARLYHAVGEAFGFDRVRGAAGAYAVGDNFERMALRRLIEDLLTQQADLTRAIMAFAGG
                     PQAGEDARSAHDAASAWSALRFEKVAVARKTIDEIEASGGAWTFAKLTIANAALRELA
                     AEGGKRRR"
BASE COUNT         1236 a         2883 c         2682 g         1259 t
ORIGIN      
        1 ttcaacggcg aggacgtccg cctcgacggg gcgatccgga tggctccgcg ctaacgcagg
       61 gtcttttcga aaaaccgcac aacctcggcg ttgaaggtct tgtggaacgc cgcgcggtcg
      121 atgttgctcg cgcagatgtc cggcgcgagc ttggccagat ccgcgctgca gggcggcagg
      181 aagtcgaaat ggtccgcgcg gggaaccagg tggtattccg ccttcggcag taggccgtgg
      241 acggcctcgg cgtaataggg ctggggcagc acggtgtccc attccgcgcg ccagagctgc
      301 accgggacgc tgaccttggc gagcccggcg ggggcgaagg cgaagcccat ggcaggcgcg
      361 gccaccacgg ccgcgcggat acgggggtcg tgggcgatcg gggcggcctt ggccggcggc
      421 gcgtcgccca gcttgccgat cgtcgcgcag tcgtagaagt gcggatgctg ccggcagtga
      481 ccggccacca ggctcatatc gggctctccg ccgatggcgc ccagaacggt gaaaccgccc
      541 gacgaaaagc cgaacgcgcc gatccgctgg gcgtctatgg cgtcgtggcc gcgccaggcg
      601 gtcgtcacat agtcgagggt ctgggtcagt tgcccgggcc gctccgtgat gcggcgggtg
      661 cggctgcggt cgtcataggt atccccggtg tgggagaccg cggcgaccac gaagcctgcc
      721 tgggcgagcg ccttggcggt gtcgcgatgg tcgatgaagg acccgccggt cccgtggctg
      781 atgatgatca gcggatggtt cttgcccgac accggggcgg ccagagccac gacctggcta
      841 gatgggccaa gcgccatcgg cgcctcgggg gcgtccgtcg gataccagat gccgacctgc
      901 agcggcttgt ccgcccccgc cggcgcggtc gcccgctcga agccgacatt ccccgcccag
      961 gccgcctgcg ccaccagcag cgccgccaga ccggccatcc aagcccacaa ccgcatctgc
     1021 gcctcctcca gtgttagcgg cgctcacatt gtcgctttat gttagctgtg tcaacattcg
     1081 cagatgagtc gcccccgcta ccaccacgga gacctgcgcg aggggctggt ccgcgccgcg
     1141 cgggcggcga tggaagcggg cggaccggag gcggtatcgc tgcgcgagct ggcccagacc
     1201 ctcggcgtct cgacggccgc gccctatcgg catttccgcg accgccgcgc cctgctcgcg
     1261 gccgtggctg cggaagggtt ctccgaactg gtcgaggcct accggcgggt acgggcggag
     1321 ccggggccgc cggccgtgat catgcggaac accgcgcgga tctatctggc gctggcgttc
     1381 gaccatccgg ggatgttccg cctgatgttc gacagcgaca tcctgagcgg cgagccgcca
     1441 cggagcctga ccgagccggc catgggggcc tgggtggagt tctgccgcac cttgtcgacc
     1501 ctcgacccgg ccgcggatga gcgcacggtg aagcgccgcg cggtcaccgg ctggtcgacc
     1561 ctgcacggct acgtcaccct ggcgcaagcc ggccggcttg caggattcat gaccgaaccc
     1621 ctcaccgagg acgacctggt ggaagccgtt ctcgacaagg ccctgaacga cggctgagca
     1681 cgcgatccct ccccatcacg accgaagcgc gttagggatc gcccgaattg acgcacgccc
     1741 gcccggcgcg gacagttgcg tgtcgcgtca tgcgaaggcc ccgaatgccc gcctctccgc
     1801 cctccgccgc tgcgccaacc gtcgcccgca acgccttggt gatcctcgcg gtgatcgcca
     1861 gcggggcgac gctctatgag ctggccccga tcctgacgcc gttggcgctg gccctgttcc
     1921 tggcggtgat gatcgacggc ttcgccaggg tgctggagca ccgcctgccg cacctctcgc
     1981 gcaaggccgc cctgccgctg gcggtgttga tctccatcct gctgttcggc ggaacggccg
     2041 tctttgtggc catgaacggc accggcttcg tgacccagct gctggcctat ggccccaagc
     2101 tcgacgccat catcttccag gtggcgaccc tggcgcatgt gcgccacccg ccgaccatgc
     2161 tcagcatcat ccgcggcctg gacgccggca aatacatcgg cctggccgcg cgcgccgtgc
     2221 aggacttcgc ctcgaccgcc cttttcgtcc tggtgtacct cgccttcatc atcgcctcgc
     2281 ggcggggctg ggagcgcaag gcgatcgggc tgtttccggc gcgcgaggag cgccagagcg
     2341 ccgtcatcgc cttcctgcgc attcgcgacg gggtcgagca gtacctgttc gtgcagacca
     2401 tcaccggcct gatggtggcg gtgctgtcgt ggatcgccat ggccgccgtc ggcctgcacg
     2461 acagcctgtt ctgggccttt ctgatcttcc tggcggtcta cattccggtg gctgggggcg
     2521 tgttcgcggg cgtcgccccg ccgctcttcg cgctggtgca gttcgacggc tatggccgcg
     2581 ccatcgtgct cttcgtcatc ctgcagctga tcggcatgat catcggcaat gtgatctatc
     2641 ccaggatgca gggccgcagc ctcaacctcg atccggtgat gatccttttg tcgctggcct
     2701 tctggagcgc catctggggg ctcactggcg cctttctttc gacgccgctg accgtcatgg
     2761 ccatggtgat cctggcgcag ttcgacggaa gccgctggat ctcggtgatc ctctcggccg
     2821 acggcgatcc gcagcaactg aagaacaaac ggcccaacga gccgcccgat gagaagcttc
     2881 ccccgcctgt caaacgcacg cttgcaaagc tgacgcgacg gcgcgccaaa caaccctgag
     2941 cgccaatcct tcaccgccaa accttcactt gggggacttc aacttgcgat ttcggttcct
     3001 atctaaggtg ggccccgggc cgacacggtc cggcaactcc gtccgcaccc ccccaagcac
     3061 gcggacgaag cgagcacaga gcgtttcgcc gcccccccac ggcggaacca aacggcgccg
     3121 gatactctcc tccggcgccg tcctcgtgtc tggaggggtt tcatgaacaa gccgcccgtg
     3181 accggggcgc tccccaaggc cgtcctcgcc gcgctgaaag gcgacccggc catctccggc
     3241 gccagggcct tcgccgccca ggcctccgcc gacgcggcgc cggacgagct gccggaactg
     3301 acccacgccg aactggccgc caacctcgcc gacttctgga gattcggcga gcggcgtcgc
     3361 ggccgcggtc cgacggtccg catcgcgccg gtagtcggcg gcaaaagcgc cggcctcgac
     3421 cggctggaga tcgtgcagga tgacgcgccg ttcctggtcg attcgatcat gggcgagatc
     3481 gccgagcagg gcctgtcggt ccgtgcgctg ttccatccca tcgtcgaggt gcagcgcgac
     3541 cgggccggcc tgcgcgggtc caccggcgcg gtgcatcgcg agtcgatgat ccaggtgatc
     3601 ctcgacccga tcggcgcgga ccgtgaggcc gccctgatcg ccggcatcaa cctgaccttg
     3661 aaggacgtcc gcgccgcggt ggacgacttc cccgagatgc tgtcgctgat ggcccgcact
     3721 caggccgagc tggagagcca ttcgaagccg gcgcggccgg aggagatcgc cttcctgtcc
     3781 tggctcgagg ccgagcagtt cgtcttcctg ggcgcccggg tctatgaata tccgcgactg
     3841 aagaacggcg actacgccgc cgaagagccg ctttaccagg ccaaggatgg cctgggcgtc
     3901 ctgcgtgacc ccgcccgcac cgttctgcgc cgcgccaacg agccggcgat cctgctgggc
     3961 aaggtcaagg accgcctgct caccgacccg gcgctgactg tcgccaagtc gaacgtccgg
     4021 agccgtgtgc accgtcgcgg ctacatggac tacgtcggca tcaagcgcta cggcgacgac
     4081 gaccggccga tcggcgaggt ccgcttcgtg ggcctgttca ccgccgaggc ctacgaccag
     4141 cccgccacgg ccgtgccgct gatccgcgag aaggtcgcca acgtgctgcg ccgcgcggcc
     4201 accgtgcccg gcggtcacaa cgaaaagcga ctgaagaaca tcgtcgagaa ccacccgcgc
     4261 gacgagctct tccagatgag cgaggacgac ctgctcgccg aggcgctggg catcctgcac
     4321 ctctacgacc gcccgcgcgt gcggctcttt gagcgtagag accccttcga ccgcttcgcc
     4381 tcggtcctgc tgttcctgcc cagggaccac tacgactccg acctggcggc gcgggccggc
     4441 aagattctct cccaaggcta tcgcgggcga gtgtcggcct cctatccgag cttctccgac
     4501 gcccctctgg cgcgggtcca ctacatcatc ggcttcaccc ccggacagca cgacgagccc
     4561 gacctgcgcg tgctcgaggc ggccatcacc gaggcggcgc gcacctggga agaccgcttc
     4621 gaagccgcgg tgcgcagcgg cgagcggccg atgcaggacg tcgccgacat cctgacgcga
     4681 tacagcgacg ccttccccgc cggctaccgc gatcggttcg agccggccga ggcgctcgcc
     4741 gacctggcgg tgatcgacgg cctggcgccg gggcagggcg tctgtgtccg cgcctaccgc
     4801 tcggccgccg acagccccct gcagttccgc ttcaagctct atcggcccgg cgcgccggca
     4861 cacctgtccg acgtcctgcc gatcctcgaa agcatgggac tgaaggccct ggccgaggcc
     4921 ggcttcccgg tgacccgcgc cggccagccg actgtctggg tgcacgactt cgaggttgag
     4981 gaccctaatg gcgccgatct ggtgttcgcc gacctcaagg gcgtcttcga agacgccgtg
     5041 gtcgcagtct ggaccggccg caccgagaac gacggcttca accgcctggt gctcgagctc
     5101 tcgatcccct ggcgcgacgc cgccctgatc cgcgccttcg cccgccaccg ccagcagtcc
     5161 ggcctcgatc ccagccagcg ggtgcaggag gaggctctgt cggcccatcc ggacgtggcc
     5221 cgcctgatcc tgacgctttt ccagaccaag ttcgatccgg catccaagac cagcgtcgat
     5281 gcgcgccgcg accaggccga cagggtcatg gtccagatcg tggacgccct gcaggccgtg
     5341 gaaagtctcg atgaggaccg cgtcctgcgc cgcatcgcgc tgctggtcca ggccatgcag
     5401 cggaccaact tctaccagcc cggcgccggt gggcccaagc cctacatctc cttcaaggtg
     5461 gcgtcgggcg agctggccga cctgccggcg cccaagccct accgcgagat cttcgtctgg
     5521 ggcgtcaacg tcgagggcgt ccacctgcgc ttcgggccgg tggcccgcgg cggcctgcgc
     5581 tggtctgacc gccgcgacga cttccgcacc gaggtgctgg gtctggtgaa agcccagcag
     5641 gtcaagaacg cggtgattgt ccctgtgggc tccaagggcg ggttctatcc caagcagctg
     5701 cccaagggcg gcgcccgcgc cgaggttcag gcggagggga tcaatgccta caagacgttc
     5761 ctgtcgggcc tgctggacat caccgataac ctgtcgcccg acggcaaggt gatcccgcct
     5821 gagcaggtca tcgccttcga tggcgacgat ccctatctgg tggtggccgc cgacaagggc
     5881 acggccacct tctccgatat cgccaacggc atggccgagg cctatggctt ctggctcggc
     5941 gacgccttcg cctccggcgg gtcggccggt tatgaccaca aggtcatggg catcaccgcc
     6001 cgcggcgcct gggaagccgt caaacgtcat ttccgcgaac tcggcaagga catccaggcc
     6061 gagcccttca ccgtcgtggg ctgcggggac atgtctggcg atgtgttcgg caacggcatg
     6121 ctcttgtcaa aacagaccag gctgctggcc gccttcgacc accgccacat cttcctcgac
     6181 cccgatccgg acccggcgaa gtcctggacc gagcgggcgc gcatgtttgc cctgccgacc
     6241 tcgtcgtggg ccgactatga caagaagctg atctccaagg gcggcgggat attcccacgc
     6301 acgctcaagt cgatcccgat ctcggcccag gtgaaagcca tgctggagat caaggccgac
     6361 gccttgccgc caaccgacct gatcaacgcg atcctcaagt cgcaggccga actgctctac
     6421 ctcggcggca tcggcaccta tgtgaaggcc cagcgcgaag ccaacgccga cgttggcgac
     6481 aagggcaacg acgcggtgcg gatcaacggc tgcgaactgc gggtcaaggt ggtcggcgag
     6541 ggcgcgaacc ttggcctcac ccaggccggg cgcatcgaat atgcccagat gggcgcttcg
     6601 ggggccggcg gtcggatcga caccgacgct atcgacaatt ccgcgggcgt cgacacttcc
     6661 gaccacgagg tgaacatcaa gatcctcacc ggaatgctgg agcgcaccgg cgagctcacc
     6721 cgcaatcggc gcgacacgct gctgcaatcc atgaccgacg agatcgccga gcatgtgctg
     6781 gcgcacaact acgaccagac cctggcgctt tcgctgctgg agatggatgc ggcgggtgaa
     6841 cttggcccca ccgcccagtt catggccgac ctggagagtc ggggccgcct cgaccgcgtg
     6901 gtggagggcc tgcccgacgc cgcagggatc gccgagcggg cccaggccgg caagggcctg
     6961 acccggccgg agctcgccgt tctgctggcc tacggcaagc ttgaactgaa gcgcgagatc
     7021 gtcgccaccg acgcgccgga cgatccgttc ttcgagcgcc tgctggagga ctacttcccc
     7081 aggcccatgc gcaagtgggc cgagcccatg cgccgccacc gcctgcggcg tgacatcatc
     7141 gccaccgtgg tcgccaacga cgtgatcaac cgctgcggcc cgagcttccc cgcccggttg
     7201 atgccggcgg ccggcgcgga cgcccgggcc ttcgccgcgg gctacgaagc ggccaagcag
     7261 gtgatgggca ttccggtgct ctgggacgcc gtggcggccc tggacggcaa ggcgccggcc
     7321 accgggcaga tggccttgtt ccggcggctg agcgcggcgc tgcgcggcgc caccttctgg
     7381 ctcgcgcggc gtgcggcgcg cgacaagctc gacgtcgacg ccctggtcac agcctacggg
     7441 ccgagcttcc aggccctgct caagctgatg ccggccatcc tgtcgcccat cgagcaggcc
     7501 gccgtcgaga cccgcgtgcg cctgctcacc gaggccgggg ctccgctcga caaggcccgc
     7561 gccgtggccg tcctgcagcc gatgaccatc gccggcgacc tggtcgacct ggcggaagcc
     7621 tcgagttggc cattgccgaa tgtggcccgg ctctatcacg cggtcggcga ggccttcggc
     7681 ttcgaccggg tgcgcggggc ggccggcgcc tatgcggtgg gcgacaactt cgagcggatg
     7741 gcgcttcgcc gcctgatcga agacctgctc acccagcagg ccgacctgac gcgggccatc
     7801 atggccttcg ctggcgggcc gcaggctggc gaagacgccc gctccgccca tgacgcggcc
     7861 tcggcctggt cggcgctgcg cttcgagaag gtggccgtgg cgcgcaagac catcgacgag
     7921 atcgaggcct ccggcggggc ctggaccttc gccaaactca ccatcgccaa cgccgcgctc
     7981 cgcgaactgg cggcggaggg cggcaagcgc aggcggtgat ccgggcctag tgcctgaaca
     8041 ccctcacgcc ggtgaagacc
//
LOCUS       DATAJL010000715         4614 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62565,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000715 DATAJL010000000
VERSION     DATAJL010000715.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4614
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62565"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..1559)
                     /locus_tag="VHN39_13620"
     CDS             complement(279..1559)
                     /locus_tag="VHN39_13620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX2817431.1"
                     /translation="MTDLAWIDAALTSARPQAVGALLRYFRDLDTAEEAYQEACLRAL
                     KSWPEKGPPRDAASWLIMVGRNAALDGVRRKSKLTELPPEDAISDTDDVETPMAERLD
                     GAHYRDDILRLMFICCHPDLPATQQIALALRIVSGLTVRQIARAFLVGEAAMEQRITR
                     AKGRIAKGETSFETPGPAERAERLAAVMSMVYLVFNEGYSTGPNEAEARVRLSEEAIR
                     LGRLLQRLYQTEPEIMGLTALMLLKHARTAARFDADGAIVLLDDQDRTLWNRDMIGEG
                     LALIDKAVRHRRAGPYQIQAAIDAQHARAATPGDTDWAGIDALYAALEILQPSPVVTL
                     NRAVAVSKARGPAEALAMIEPLAEALGGYFYFFGARGAFLLQLGRQAEAREAFDRAIS
                     RANTAAEAAHIRGQIDRLTADAALTSPPGGAVRG"
     gene            complement(1556..1954)
                     /locus_tag="VHN39_13625"
     CDS             complement(1556..1954)
                     /locus_tag="VHN39_13625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HEX2817432.1"
                     /translation="MLYALLCYNAEEVVFSWTKEEDDAVMAKLGMVQEKLAAAKKLGP
                     ALRLMPTTAATTLRKTDPPLVIDGPFAETKEQLLGFYIVDCDDLEEALGIARELGGAN
                     PGGSYEIRPLRLFLPGTIEAATLEASGVLA"
     gene            complement(2023..2604)
                     /locus_tag="VHN39_13630"
     CDS             complement(2023..2604)
                     /locus_tag="VHN39_13630"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2817433.1"
                     /translation="MSTVSDARVVRTREALRQAMTELAAESPLEAITVRAIAARAGVG
                     YATFFRHYADKDALLAEVTEHLISEFLQQVRPLMQQRDRPAAGRILCQYVLDHLAIHK
                     ALYAGGAGETVRAEMLRQSLAVFAKTPKFAPGGPLDDLLLFHFVSAILNLIAWWLRNL
                     DKVDADTMGEIIERAVLTPVGMLRRQPPGALAK"
     gene            2793..>4614
                     /locus_tag="VHN39_13635"
     CDS             2793..>4614
                     /locus_tag="VHN39_13635"
                     /inference="COORDINATES: protein motif:HMM:NF015657.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817434.1"
                     /translation="MKMSHKTAIGLGALAAGVSALALAASPHGVTQAKAEASRVAGPT
                     QVDDFLLADQNLFGRQLYRMGQDKAVVLVTYASGDKQLRADAPALMALKAAYAGKGVE
                     ILAVDSRLGDRRDPVIADAKAAGLDMPILFDYEQLVGEELGITRAAEVIVIDPRGWTV
                     AYRGPVASPTGEPWAKAAVDALVAGQKVALASREPTGQLIAFPDRAHANTYAQISYSK
                     TIAPIVEAKCTTCHQPGGIGPMPLISYEQVKGFSPMIREVIRTHRMPPFEPDETVGQW
                     KDDGRLSPDQMKTLVHWIDAGAPRGAGEDPLKKINFQAPEWPLGKPDKIVEIPTMKVP
                     ASGVIDYQYPSVKNVMTEGRWLKASAFVVNDRQAVHHILSGVAPSDTPAGATVASSPF
                     TTLLQGYVPGVGYQKMAQDSGLWVPAGAGLAFQAHYTTYGKATVENTKLGLYFYPKGE
                     EPKYPRRTFGIFDFSIEIPAGDGDHKEVAYIEFPKDAVVYAFTPHSHKRGVSANVSIR
                     YPNGKEEMLLAMPRYNFNWQWDYVLAKPLNVPAGSKIITRWVYDNSTRNPENPDPTKT
                     VYWGEQSFEEMLAVYIHYHWAGETAKAPRDDYEKLMQANLM"
BASE COUNT          740 a         1549 c         1588 g          737 t
ORIGIN      
        1 ggcatgatgc agccggtgcg ttcaagggcg cagtacgcct tgcgcggcgc cggcatggtg
       61 atcacgtggc tcgttctgct gacagcctgc gcgcttctgg ttctgcgcgt gctttaggtg
      121 tcgttgccaa gacggctgtt cagtctttgc caggggctga ggcaaccgat gtcaccgtgg
      181 agtcgatggg gttgtcggcg ccggacctgg gtccggcggc ggcggtgcgc tacgcgtgat
      241 ggtccgctcg gcgtcaggtg ttcgcggcga ccatggatct acccgcgcac ggcgccgcca
      301 ggcgggctgg tcagggccgc gtcggcagtc agccggtcga tctggccgcg gatatgggcc
      361 gcctcggcgg cggtgttggc gcgtgagatg gcccggtcga aggcctcccg cgcctcggcc
      421 tggcggccga gctgcagcag gaaggcgcct ctggccccga agaaatagaa gtagccgccc
      481 agcgcctcgg cgaggggctc gatcatggcc agggcctcgg cgggcccgcg cgccttgctc
      541 accgccacgg cgcggttgag ggtcaccacc ggcgagggct gcaggatttc cagcgccgcg
      601 tagagggcgt cgatcccggc ccagtcggtg tccccgggcg tcgcggcccg cgcatgctgg
      661 gcgtcgatcg ccgcctggat ctgatagggc ccggcgcggc ggtggcgcac ggccttgtcg
      721 atcagcgcca ggccctcgcc gatcatgtcg cggttccaca gggtccgatc ctgatcgtcc
      781 aggagcacga tcgccccgtc ggcgtcgaac ctggccgccg tgcgcgcgtg cttcagcagc
      841 atcagcgcgg tcaggcccat gatctcgggc tcggtctggt agagccgctg caggagcctc
      901 ccgagccgga tcgcctcctc gctcagccgc acgcgggctt cggcctcgtt ggggcccgtc
      961 gaatagccct cgttgaacac caggtagacc atggacatca ccgccgcgag gcgctcggcg
     1021 cgctccgccg gaccaggggt ctcgaagctg gtctcgcctt tggcgatgcg ccccttggct
     1081 cgggtgatcc gctgctccat ggccgcctcg ccgaccagga acgcgcgggc aatttgccgg
     1141 actgtcagtc cggacacgat gcgcagcgca agcgcgatct gctgggtcgc cggcaggtcc
     1201 ggatggcagc agatgaacat cagtctgagg atgtcgtcgc ggtagtgggc gccgtccagc
     1261 cgctcggcca tgggcgtctc gacgtcgtcg gtgtcggaga tcgcgtcctc cggcggcagt
     1321 tcggtgagct tgctcttgcg ccgaaccccg tccagcgcgg cgttgcgccc gaccatgatc
     1381 agccaggagg ccgcgtcgcg cggcggcccc ttttcgggcc agctcttcag cgcccgaagg
     1441 caggcctcct gataggcctc ctcggcggtg tcgaggtcgc ggaaatagcg aagcagggcg
     1501 cccaccgcct ggggacgagc ggacgttagc gccgcgtcga tccaggcgag gtcggtcatg
     1561 cgagcacgcc gctcgcctca agcgtcgcgg cctcgatggt ccccggcagg aacaggcgca
     1621 gcggccggat ctcgtaggac ccgccgggat tagccccgcc cagctcgcgc gcgatgccca
     1681 gcgcctcctc aaggtcgtcg cagtcgacga tgtagaagcc gagaagctgt tccttggtct
     1741 cggcgaacgg cccgtcgatc accagcggcg gatcggtctt gcgcagcgtc gtggccgcgg
     1801 tcgtgggcat gagcctgagc gccgggccca gcttcttggc ggcggccagc ttctcctgga
     1861 ccatgccgag cttggccatg actgcgtcgt cctcctcctt ggtccaggag aagacgacct
     1921 cttcggcgtt gtaacagagc agggcgtaga gcatggcgtt ggggctcccg aggcgaactt
     1981 aggacgcccg accctaaacg gccccgacac cggtccgcaa aattacttcg cgagcgcccc
     2041 aggcggctga cggcggagca tccccacggg ggtgagaacg gcgcgctcga tgatctcgcc
     2101 catggtgtcg gcgtcgacct tgtcgaggtt gcgcagccac caggcgatca ggttgaggat
     2161 cgccgagacg aagtggaaga gtagcaggtc gtcgagcgga cctcccggcg cgaacttggg
     2221 ggtcttggcg aagaccgcga gcgactgacg cagcatctcg gcgcgcacgg tttccccggc
     2281 cccgccggca tagagcgcct tgtggatcgc caggtggtcg agcacgtact gacataggat
     2341 tcggcctgcg gcgggccggt cgcgctgctg catcagcggc cgcacctgct gcaggaattc
     2401 gctgatcaag tgctcagtga cctcggcgag cagggcgtcc ttatcggcgt agtgccggaa
     2461 gaaggtggcg tagccgacgc cggcgcgggc cgcgatggcg cgcacggtga tcgcttccag
     2521 cgggctctcg gcggccagct cggtcatcgc ctgccgcaac gcctcgcggg tgcgcacgac
     2581 gcgcgcgtct gaaacggttg acatcggcgg tctaagggtc cgttatgatc cactgtgtat
     2641 cgtaagtgcg tcgcggtggc tgttgtggac tgcgaaaccg cattccgcaa ggtcaaggcg
     2701 gcgtacgagg ccggacatgg ctttgcagtg ttccggtccg cttgaacaga ggcagcgcgg
     2761 ccctttgaga gccgcgcgca gggagacgcg cgatgaagat gtcccacaag acggcgatcg
     2821 gtcttggcgc cctggcggcc ggcgtcagcg cgctcgcgct cgccgcctca ccacatggcg
     2881 taacccaggc caaggccgag gcgtccaggg ttgcgggccc gacacaggtc gacgacttcc
     2941 tgctggccga ccagaacctg ttcggccgcc agctctatcg gatgggccag gacaaggccg
     3001 tggttctggt cacctacgct tccggcgaca agcagctccg agccgacgcg cccgcgctga
     3061 tggcgctgaa agccgcctat gccggcaagg gcgtcgagat tctggccgtc gacagccgcc
     3121 tcggcgaccg gcgcgatccg gtgatcgccg acgccaaggc ggccggtctc gatatgccga
     3181 tcctgttcga ctacgagcag ttggtgggcg aggagctcgg gatcacccgg gccgccgagg
     3241 tcatcgtcat cgacccgcgc ggctggacgg tcgcctatcg cggcccggtg gccagtccta
     3301 caggcgaacc ttgggcgaag gctgcggtcg acgccctggt cgccggccag aaggtcgccc
     3361 tggccagccg tgagcccact ggccagctga tcgccttccc ggaccgcgcc cacgccaata
     3421 cctacgccca gatctcctat tccaagacca tcgccccgat cgtcgaggcc aagtgcacaa
     3481 cctgccacca gccgggcggg atcggcccga tgccgctcat cagctacgag caggtcaagg
     3541 gcttctcgcc gatgatccgc gaggtgatcc gcacccaccg catgccgccc ttcgagcccg
     3601 acgagacggt gggccagtgg aaggacgatg ggcgcctgtc gcccgaccag atgaagaccc
     3661 tggtccactg gatcgacgcg ggggcgccgc gcggcgcggg cgaggacccg ctgaaaaaga
     3721 tcaacttcca ggcgcccgaa tggccgctcg gcaagcccga caagatcgtc gagatcccga
     3781 ccatgaaggt cccggccagc ggggtcatcg actaccagta tccgtcggtg aagaacgtca
     3841 tgaccgaagg ccgctggctg aaggcgtcgg ccttcgtggt caacgaccgc caggcggtgc
     3901 accacatcct gtcgggggtc gcgccgagcg acacgccggc cggcgcgacg gtcgccagct
     3961 ctccgttcac gaccctgttg cagggctatg tccccggcgt cggctaccag aagatggcgc
     4021 aagacagcgg cctttgggtg ccggccggtg ccggcttggc cttccaggcc cactacacga
     4081 cctatggcaa ggcgacggtg gagaacacca agctgggact ctacttctat cccaagggcg
     4141 aggagccgaa gtacccgcgg cggaccttcg gcatcttcga cttctccatc gagattccgg
     4201 cgggcgatgg ggaccacaag gaggtcgcct acatcgagtt cccgaaggat gcggtggtct
     4261 acgctttcac cccgcactcc cataaacgcg gcgtctcggc caacgtctcc atccgctatc
     4321 cgaacggcaa ggaagagatg ctgctggcca tgccccgcta caacttcaac tggcagtggg
     4381 actatgtgct ggccaagccg ctcaacgtgc cggcgggctc gaagatcatc acccgctggg
     4441 tctacgacaa ctcgacccgc aacccggaaa accccgaccc gaccaagacg gtttactggg
     4501 gcgagcagtc cttcgaggag atgctggcag tctacattca ctaccactgg gctggcgaga
     4561 cggcgaaggc gcccagggac gactacgaga agctgatgca ggccaacctc atgc
//
LOCUS       DATAJL010000716         2088 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_38668,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000716 DATAJL010000000
VERSION     DATAJL010000716.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_38668"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..325
                     /locus_tag="VHN39_13640"
     CDS             <1..325
                     /locus_tag="VHN39_13640"
                     /inference="COORDINATES: protein motif:HMM:NF012616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rRNA adenine N-6-methyltransferase family
                     protein"
                     /protein_id="HEX2817435.1"
                     /translation="VETLFTLPPSAFSPPPDVFSTVLRLEFQPRFEELGVDAAAFDTF
                     LRACFAQKRKTLANNLRAAGYAPGDLQGAWPAEIPLQARAESVALEPMAKLYRPLASI
                     RQLSS"
     gene            complement(318..>2088)
                     /locus_tag="VHN39_13645"
     CDS             complement(318..>2088)
                     /locus_tag="VHN39_13645"
                     /inference="COORDINATES: protein motif:HMM:NF016648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HEX2817436.1"
                     /translation="TYIQGTVTVNEPNNGESVPAQPNLPLLAGVQLVTGNDGQAEVEF
                     EDGSIVRLTPNSVLSLDNLAIEPDGDFVTNLSLLSGLAYCELRATPQYRYFIDAGGDI
                     LSPVENTTVRVNFDASPAIFSVLDGTAQVERQGAPNSDGPSTGYQTQVRAGESLRSDG
                     NRYFLSQQIADDSWDQWNEDRDQAATTEASDSTAVRDNYAGAEGYGWSDLDANGDWYN
                     VPGQGTIWQPQVAVDDPSFDPYGNGAWVYSNSGYLWASSYSWGWTPYRCGNWSYYNNF
                     GWGWAPGAGCGGRGWGFGGGGRPVNIVIGPTGYQPIRVPFSGGPHPRPIWPIHTPSGS
                     TRTAPTSGLSRGPRRIAGVTVQPIAREHSGPAPGGGGSALRRDFPIDSSNRTPVLGLA
                     STSPTVVHTSSGLHTVDQGPRPTAARQPDQTPGQPETYGGRRYPSNVRPAPANAASQP
                     QGARPDPSAPETRRPADNSAPARPAMDRYPSYNRPADNIAPSQPPANQNPAPRRPDQQ
                     SAPMPRPSEPPPSYQGNSPQPTVRSAPPADRTVERSSPPPAERNAPPPPPPQPSRPAS
                     SPAPPQPAPRPTTQSGPARTSPN"
BASE COUNT          313 a          608 c          785 g          382 t
ORIGIN      
        1 cgtcgagaca ctatttacgc tgccaccgag cgcgttttcg ccgccgccgg acgttttctc
       61 gactgtcctg agattggaat ttcagccgcg cttcgaggaa ctgggcgtcg atgcagcggc
      121 gtttgatacg tttcttcggg cttgttttgc gcaaaagcga aagacgctgg cgaacaatct
      181 acgggctgcc ggttacgcgc ctggcgatct gcagggcgcg tggccagcgg agattccgct
      241 acaggcgcgg gcggaatcgg tcgcgctgga gccgatggca aagctgtacc gcccactcgc
      301 ttcgattcgg cagctctcta gttaggcgaa gtgcgtgccg ggcctgattg cgtcgtcgga
      361 cgcggagctg gttggggcgg cgcaggagaa ctcgcgggac gggaaggctg tggcggcggt
      421 ggcggaggag cgttgcgctc ggccggcgga ggcgaacttc gctcgaccgt gcgatccgca
      481 ggcggcgcgc tgcgcaccgt cggctgcggc gagttcccct gataggaagg cggcggctcg
      541 gacggcctcg gcattggggc ggattgttga tccggtcggc gaggcgctgg gttctggttc
      601 gccggcggtt ggcttggcgc gatattgtcc gcggggcggt tgtacgaggg gtaacggtcc
      661 atagcgggcc gagccggcgc ggagttgtca gccggcctgc gggtctccgg cgcagaggga
      721 tcgggacgcg cgccctgcgg ctgtgaggcc gcatttgccg gagcaggccg cacgttggat
      781 ggatagcgac ggccgccgta tgtctcgggc tgccccggag tctggtcagg ctgccgagcg
      841 gctgtcgggc gcggaccctg gtccacggta tgcaggccgg aagatgtgtg gactacggtt
      901 gggctggtgc tggccaggcc caggactggt gtgcggttgg aggagtcgat tgggaagtcg
      961 cggcgtaaag ccgagcctcc accgcctggc gcggggccgg aatgctctcg ggcgatgggc
     1021 tgaaccgtga cgcctgcaat gcggcgaggg cctcgcgata gccccgaagt gggcgccgtg
     1081 cgggtcgatc cggacggggt gtgtatcggc cagatggggc gcgggtgagg tccgcccgaa
     1141 aacggaaccc ggatgggctg gtagccagta gggccgatga cgatgtttac cgggcgtccg
     1201 ccgccgccga agccccagcc gcggcctccg cagcctgcgc ctggagccca accccagccg
     1261 aagttgttgt agtacgacca atttccgcag cgatacggcg tccatcccca cgaatagctc
     1321 gaagcccaga gatagccgga gttggagtaa acccaggcgc cgttgccata ggggtcgaag
     1381 ctcgggtcgt cgactgcgac ctgcggctgc cagatggtgc cctgtccggg cacgttgtac
     1441 cagtcgccgt tggcgtccag atcggaccag ccatagccct cggcgccagc atagttgtcg
     1501 cgcacggcgg tgctgtcgga agcctcagtt gtggctgcct ggtcgcggtc ctcgttccat
     1561 tggtcccagg agtcgtccgc aatctgctgc gagaggaaat agcggttgcc gtcggagcga
     1621 aggctctcgc cggcgcggac ctgcgtctgg tagccggtgc tggggccgtc gctgttgggc
     1681 gcaccctggc gctcgacctg ggcggtgccg tcgaggacgg aaaagattgc aggtgacgca
     1741 tcgaagttga cgcggacggt ggtgttctcg accggcgaaa gaatgtcgcc gcctgcgtcg
     1801 atgaagtagc gatactgcgg cgtggcgcgc agctcgcagt aggccaggcc gctcagcagg
     1861 ctgaggttgg tgacgaagtc gccgtcgggc tcgatcgcga ggttgtccag cgagagcacg
     1921 ctgttcggcg tcaggcggac gatgctgccg tcctcaaact ctacttcggc ctgtccgtcg
     1981 ttgccggtga cgagttgcac tcccgcgaga agaggcagat tcggttgcgc gggcacactt
     2041 tcgccgttat taggctcgtt gaccgtcacg gtgccctgaa tgtaggtc
//
LOCUS       DATAJL010000717         4281 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_12669,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000717 DATAJL010000000
VERSION     DATAJL010000717.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4281)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4281)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4281
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12669"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..559
                     /locus_tag="VHN39_13650"
     CDS             <1..559
                     /locus_tag="VHN39_13650"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2817437.1"
                     /translation="FDRALIHQSAGRHADALADYDRAILWGPPQVETLHNRAQCLRAL
                     GRHHEARTACGRALDIDPDHIAARIDRVCLSQALGDLEAMARDVEHGLRRAPEDARLL
                     CLDGIVAANEGRHEAALASFEAALDREPDLADAWANRAIVHVRRGDNAKALADLDRAL
                     ALRDDPAIRRNRQRILERTSPTGPR"
     gene            620..2698
                     /locus_tag="VHN39_13655"
     CDS             620..2698
                     /locus_tag="VHN39_13655"
                     /inference="COORDINATES: protein motif:HMM:NF040071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6351 family protein"
                     /protein_id="HEX2817438.1"
                     /translation="MGSRIALGRIAACWLAAMSLPGAHAAVAAAKSSALAIHILSSRP
                     DMVSGGDALVEVKGATKGVKLSLNGRDVTGELKPDPATHSLRGVVGGMTLGKNTLSAS
                     AGAAKASLAVTNYPITGPILSGPQITPYECKTEESGLGKPLDKDCSAADRTDYFYRST
                     DGKFKPLKDRAERPVDLATTKTIDGASVPYVVRVESGTVNRTIYRTAMLDDPKGWNHR
                     LAVSFGGGAGAKYNQGTNTAEAALTDLYLSRGFAHMVATELVNNLHGNAVLQGETLMM
                     LKEHFIKVHGVPKWTVGNGGSGGAIQQLEITQMYPGLLDGLQPSLSFPDSTLHTSDCG
                     VLQRYWRGSGKDWSQEKKTAVEGFTPGTCRAWEGSFVPVSNSGNKPGCDLKDQSLVWD
                     AKTNPKGARCALADMRANQYGRDPATGYARKTEDNTGLQYGLKGLNGGKLSVDEFLDL
                     NEKIGGYDNDGGFSDHRSHGDPIALKAAYASGLLNGGGGGLATVPILHYRTYNDPLGD
                     IHSRERDMSIRARLIKANGDGDNEVFWVGPGAQPGGPRNDPTVAKSFALMSGQSLDTV
                     TKWLDRMAADPAPLSHAKVVRDKPAEARDAYFGPDGVKHVEKATWDGPGGYNAMYPNH
                     SEPRIEAGAPIANDVLKCALKPVNVADYKVTFSAGQAAHLKAIFPTGVCDFSKKGVGQ
                     VPLKGTYQRY"
     gene            complement(2692..3273)
                     /locus_tag="VHN39_13660"
     CDS             complement(2692..3273)
                     /locus_tag="VHN39_13660"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEX2817439.1"
                     /translation="MTSFPLSLVVERGAFKPANAVTLSRGLLIAPIFGLLWAGKPILA
                     LGLYVLAALTDLIDGWLARRFNQSSDFGAQLDALVDNVFSLAILGFLALAYPGLIARQ
                     WLAAAVLFGGPIAYLGASWLMTRRLMMFHVWSAKVGAFLLFCLWPAIAVTGWTGWLWL
                     CALVVGASRLEQVILIARGGRDLNAGHGFVRVQ"
     gene            complement(3270..3524)
                     /locus_tag="VHN39_13665"
     CDS             complement(3270..3524)
                     /locus_tag="VHN39_13665"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEX2817440.1"
                     /translation="MSEEGPSVWIGHDLPPIRRDGVEYFLLSADGELYLVPNVCPHRG
                     GPLKFGRLNAAGELVCPMHGNAFSIESLIANPATLRLGVS"
     gene            complement(3521..>4281)
                     /locus_tag="VHN39_13670"
     CDS             complement(3521..>4281)
                     /locus_tag="VHN39_13670"
                     /inference="COORDINATES: protein motif:HMM:NF025871.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="iron-containing redox enzyme family protein"
                     /protein_id="HEX2817441.1"
                     /translation="YRNFLVQSSPDLLAEASASALGVIGEYGEPQSALFRILIDEFGY
                     GAHHKKHAVFYRATMRSFDLDDAYNGYWPWFDTAALKLHNVIHWLFQNPRNFFRQVGF
                     LLYAETAYQRSTLAHHRYLREFHPDADARYFGEHAHIDLHHTRMVIDEAVTPLVARFG
                     AEVATEIIAGAEMTKAAFARAGEHLLGVSQAFAAAPSARFGVEGQPRARLGRPVTPAS
                     PPHGAPVQVGVLGVLQDGRDFAAFPATAIGRVTA"
BASE COUNT          762 a         1467 c         1473 g          579 t
ORIGIN      
        1 gtttgatcgc gcgctgatcc atcagagcgc cgggcggcat gcagacgcgc ttgccgacta
       61 tgaccgcgcc atcctctggg ggccgccgca ggtcgaaacc ctgcacaacc gtgctcagtg
      121 ccttcgcgcg ctgggtcgtc accacgaggc ccgcacggcc tgcggtcgcg cgctcgacat
      181 cgatcccgat cacatcgccg cgcggatcga ccgcgtctgc ctcagccagg cgctcggcga
      241 cctcgaggcc atggcgcgcg acgtcgagca cggccttcgc cgggcgccgg aggacgcgcg
      301 gctgctctgc ctggacggga tcgtggcggc gaacgagggc cggcacgagg cggcgctcgc
      361 gagctttgag gcggccctgg accgtgaacc cgatctcgct gacgcctggg cgaaccgcgc
      421 catcgtccac gtccggcgcg gcgacaacgc gaaggcgctc gccgatctcg atcgcgctct
      481 ggccctgcgc gacgatccgg ccatacgccg caaccgtcag cggattctgg agaggacttc
      541 ccctacgggc ccgcgctgag cgtttgcgtc ggcgtccgca agcagccaag cttgcgaaaa
      601 gggtctggga ggactgggta tgggttcgcg catcgcgtta gggcggatcg ccgcctgttg
      661 gctggccgca atgagcctgc cgggcgcaca cgccgcggtg gcggcagcca agagctcggc
      721 cctggccatc cacatcctgt cctcacggcc cgacatggtc agcggcggcg acgccctggt
      781 cgaggtcaag ggcgcgacca agggggtgaa gctcagcctg aacggccgcg acgtcaccgg
      841 tgagctgaag cccgacccgg cgacccacag cttgcgcggc gtggtgggcg gcatgacgct
      901 gggcaagaac accctttcag ccagcgcggg ggcggccaag gccagcctcg ccgtgacgaa
      961 ctatccgatc accgggccga tcctgtcggg gccgcagatc accccctacg agtgcaagac
     1021 cgaggaatcc ggcctcggca agccgctgga caaggactgc tcggccgccg accggaccga
     1081 ctatttctac cgctcgaccg acgggaagtt caaaccgctg aaggaccgcg ccgagcggcc
     1141 ggtggacctc gccacgacca agaccatcga cggggcctcc gtgccctatg tggttcgcgt
     1201 ggagtccggg acggtcaacc gcaccatcta ccgcaccgcc atgctggatg accccaaggg
     1261 ctggaaccac cgcttggcgg tgagcttcgg cggcggagcg ggcgccaagt acaaccaggg
     1321 gaccaacacc gccgaggcgg cgctgaccga cctctacctg tcgcgcggct tcgcccacat
     1381 ggtcgccacc gagttggtca acaacctgca cggcaacgcc gtcctgcagg gcgagaccct
     1441 gatgatgctc aaggagcact tcatcaaggt ccacggggtt ccgaagtgga ccgtgggcaa
     1501 cggcggttcc ggcggcgcga tccagcagct ggagatcacc cagatgtacc cgggcctgct
     1561 ggacggcctg cagccctccc tctccttccc ggattcgacc ctgcacacgt cggactgtgg
     1621 cgtcctgcag cgctactggc gcgggagcgg caaggactgg agccaggaga agaagaccgc
     1681 cgtggagggc ttcacgcccg gcacctgccg cgcctgggag ggctcgttcg tgccggtctc
     1741 caactcgggc aacaagccgg gctgcgacct gaaggaccag agtctggtct gggacgccaa
     1801 gaccaatccc aagggcgcgc gctgcgcgct ggccgacatg cgcgccaacc agtacggccg
     1861 cgacccggcc accggctacg cccgcaagac cgaggacaac accggcctgc agtacgggct
     1921 gaagggcctg aacggcggca agctcagcgt cgatgagttc ctcgacctca acgagaagat
     1981 cggcggctac gacaacgacg gcggcttctc cgaccaccgc agtcacggcg acccgattgc
     2041 gctgaaagcg gcctatgcct cgggcctctt gaacggcggc ggcggcggcc tggcgaccgt
     2101 gccgatcctg cactaccgca cctacaacga ccccttgggc gacatccaca gccgcgagcg
     2161 cgacatgtcg atccgcgcgc gcctgatcaa ggccaatggc gatggcgaca acgaggtctt
     2221 ctgggtgggc ccgggagccc agcccggcgg cccgcgcaac gatccgacgg tcgccaagtc
     2281 cttcgccctg atgtccggcc aatcgctcga cacggtgacc aagtggctgg acaggatggc
     2341 ggccgacccg gcgccactca gccacgccaa ggtggtcagg gacaagcccg ccgaggccag
     2401 ggacgcctac ttcggccccg acggcgtcaa gcatgtggaa aaggccacct gggatggccc
     2461 cggcggctac aacgccatgt atcccaacca ctccgagccc cgtatcgagg ccggggcgcc
     2521 gatcgccaac gacgtgctga agtgcgccct gaagccggtg aacgtggccg actacaaggt
     2581 gacgttcagc gcgggccagg ccgctcacct gaaggccatc ttccccaccg gcgtctgcga
     2641 cttcagcaag aagggcgtgg gccaggtccc gctgaagggg acctatcagc gctattgaac
     2701 ccggacgaaa ccgtggcctg cattgaggtc acggccgccg cgggcgatga ggatgacctg
     2761 ttcgagccgg cttgcgccca ccacgagcgc gcagagccat agccagccgg tccagccggt
     2821 gaccgctatg gccggccaca ggcagaagag caggaaggcg ccgaccttcg ctgaccagac
     2881 gtggaacatc atcagccgac gcgtcatcag ccaggaggcc ccgaggtagg cgatcggccc
     2941 gccgaacagc acggcggcgg ccagccactg gcgcgcgatc aggccgggat aggcgagcgc
     3001 cagaaagccc aggatcgcca gtgagaagac gttgtcgacc agcgcgtcga gctgcgcccc
     3061 gaagtcggag gactgattga agcgccgcgc cagccagccg tcgatcaggt cggtcagggc
     3121 ggccaagaca tagaggccga gggccaggat gggtttgcct gcccacagca ggccgaagat
     3181 cggcgcgatc agcaggccac ggctgagggt gacggcgttg gccggtttga acgcgccccg
     3241 ctccacgacc agcgacagcg ggaaactggt cacgacacgc cgagcctcag cgtggccggg
     3301 ttggcgatca ggctctcgat cgaaaaggcg ttgccgtgca tcgggcagac cagctcgccc
     3361 gccgcgttca accgcccgaa cttcagcggg ccgccgcggt gcggacagac gttggggacc
     3421 agatagagtt cgccgtcggc cgagagcagg aagtactcca ccccatcgcg gcggatcggc
     3481 ggcaggtcat ggccgatcca gaccgacggc ccctcctcgc tcacgccgtc acccgcccga
     3541 tcgccgttgc ggggaaggcc gcgaagtccc ggccgtcctg gaggacgccc aggactccga
     3601 cttgcactgg cgctccgtgc ggcgggctcg ccggggtcac cgggcggccc aggcgcgccc
     3661 gaggctgacc ctcgacccca aagcgcgccg atggcgccgc cgcgaaggcc tgggagacgc
     3721 ccagcagatg ctcgccggcc cgggcgaagg cggccttggt catctcggct ccggcgataa
     3781 tctcggttgc gacttcggcg ccgaacctgg cgaccagcgg ggtcaccgcc tcgtcgatca
     3841 ccatgcgggt gtggtgcagg tcgatatggg cgtgctcgcc gaaatagcgg gcgtcggcgt
     3901 cgggatggaa ttcgcgcagg tagcggtgat gggccagcgt cgagcgctgg taggcggtct
     3961 cggcatagag caggaaaccc acttgccgga aaaaattgcg ggggttctgg aacagccagt
     4021 ggatgacgtt gtgcagtttc agggcggcgg tgtcgaacca gggccagtag ccgttgtagg
     4081 cgtcgtccag gtcgaagctg cgcatggtcg cccggtagaa gacggcgtgc ttcttgtggt
     4141 gggctccgta gccgaactcg tcgatcagga tgcggaacag cgccgactgc ggctcgccat
     4201 attcgccgat caccccaagc gccgaggccg aggcctcggc cagcaggtcc ggcgaggatt
     4261 gcaccaggaa gttccggtag t
//
LOCUS       DATAJL010000718         4324 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_121216,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000718 DATAJL010000000
VERSION     DATAJL010000718.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121216"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1061)
                     /gene="purF"
                     /locus_tag="VHN39_13675"
     CDS             complement(<1..1061)
                     /gene="purF"
                     /locus_tag="VHN39_13675"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEX2817442.1"
                     /translation="MSAAARRSPPYRDPLDDSPRLECGVFGVFDCPEATGLTALGLHA
                     LQHRGQEACGIACFDGQRFHTERHMGHVGDAFGGMDLTERLPGRFAIGHTRYSTAGGS
                     VIRNVQPMFADMEAGGVALCHNGNLTNFLTLRDQLVSNGVIFQSTSDSEVILHLIARS
                     RKSRFVDRFIDALSQIEGGYALVALTNKKLIGVRDPLGIRPLVLGELDGKPILASETC
                     ALDIIGAKFVRDVEHGEMVVIDADGVTSVKPFPAQQARPCIFEYVYFARPDSVVNGRS
                     VYEVRKRMGNRLAQESGVDADVVVPVPDSGVPAALGYAQEAGLPFEMGIIRNHYVGRS
                     FIQPTQATRESSVRMKLSP"
     gene            complement(1058..1690)
                     /locus_tag="VHN39_13680"
     CDS             complement(1058..1690)
                     /locus_tag="VHN39_13680"
                     /inference="COORDINATES: protein motif:HMM:NF014704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEX2817443.1"
                     /translation="MGLGLTQFDAIVLILLAISAAMGFFRGAVLEIVSLIALVVAAGV
                     AIFGLSTFAPMARKLIHLDWLATAAALIVVFVVVFALIRLVGAIIARQVQQTDFLGFL
                     DRSLGLFIGLARGLLVLGALNLMFNAATPRDMQPHWIVGATTWPLAQTMGKLITALAP
                     QGMDIAGRLKPAFDRALHGAAHDTMDDRLKSEGYDARQRGEIEDLVEKSR"
     gene            complement(1681..3048)
                     /gene="radA"
                     /locus_tag="VHN39_13685"
     CDS             complement(1681..3048)
                     /gene="radA"
                     /locus_tag="VHN39_13685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEX2817444.1"
                     /translation="MARDGAVYACQSCGAVQTKWAGQCPACGAWNTLVEELQARPPGA
                     MAPSKASRTRGLAFEGLEDETPAPPRISTGVDEFDRVCGGGVVPGSAILLGGDPGVGK
                     STLMLQVVAQAALRGAKCAYISGEEAVEQVRSRAQRMGLALAPVKLAAETSLRAITDG
                     LKREAFDLVVIDSIQTLWSDAHEAGPGSVTQVRAAAGELVRLAKSRGVAIILVGHVTK
                     EGTIAGPRVIEHMVDAVLSFEGERGYPFRILRGAKNRFGATDEIGVFEMGDAGLAEVK
                     NPSALFLNTSGERAAGAAVFAGIEGSRPVLVEFQALVAPSAYGTPRRAVVGWDSGRLA
                     MVLAVLEARCGLSFGDRDVYLNVAGGLRITEPAADLAAAAALASSGLDQALPQDCVVF
                     GEISLSGEVRSVSRMDSRLKEAAKLGFRRALGPAGMDGGGAMLTTGATRLADAVQRIG
                     DGAWG"
     gene            3179..3868
                     /locus_tag="VHN39_13690"
     CDS             3179..3868
                     /locus_tag="VHN39_13690"
                     /inference="COORDINATES: protein motif:HMM:NF016764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031267 - small GTPase binding [Evidence
                     IEA];
                     GO_process: GO:0006888 - endoplasmic reticulum to Golgi
                     vesicle-mediated transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Yip1 family protein"
                     /protein_id="HEX2817445.1"
                     /translation="MSGVEPESPGSAPGPGPGAGPEPGPRPGVSFQSLIGRVLNLLLH
                     PHEAWDAIDVEPATIEGLYRGWVLPLAAIPAVGRAVGLLSFRGVEIFGIRYQPGFVGI
                     IGDAVATYALTLISVYLLALIIDQFAVQFGGERSRTQAFKVAAYSGTAAWVAGVFMLL
                     PTAGGLFALLGALYSLYLLYLGLPKLMRSSPAFTLNYFALTLVAAIVMAVVIGSVTSC
                     ATNFGGPIHIY"
     gene            complement(3862..4290)
                     /locus_tag="VHN39_13695"
     CDS             complement(3862..4290)
                     /locus_tag="VHN39_13695"
                     /inference="COORDINATES: protein motif:HMM:NF013038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase C-terminal domain-containing
                     protein"
                     /protein_id="HEX2817446.1"
                     /translation="MFGGGGRGRPDERLRAVATLTAPILDVRHLNSGDPLGYGESVRM
                     TAPTRVAFVAAGYADGIIRSAKDAYVWFAGARRRLLVANMDVLAIDLGDAEAQLGQSV
                     ELLGPNAPIDDFAEAAGTVAYEIMVRLSRRAERIYLGEAQ"
BASE COUNT          678 a         1481 c         1504 g          661 t
ORIGIN      
        1 ttgggcgaca gcttcatgcg tacgctggat tcccgcgtcg cctgggtcgg ctggatgaag
       61 gagcggccga catagtgatt gcggatgatg cccatctcga agggcagacc cgcttcctgg
      121 gcgtagccga gcgcggcggg cacgcctgag tcgggcaccg gcaccacgac gtcggcgtcg
      181 accccgctct cctgcgccag tcggttgccc atgcgcttgc gcacctcata gaccgagcgg
      241 ccgttcacga cggagtcggg gcgggcgaaa tagacgtatt cgaaaataca gggccgggcc
      301 tgctgggcgg ggaagggttt gacgctggtg accccgtcgg cgtcgatgac caccatctcg
      361 ccgtgctcga cgtcgcggac gaacttggcg ccgatgatgt ccagggcgca ggtttccgac
      421 gccaggatcg gcttgccgtc cagctcgcct agcaccaacg gccggatgcc gaggggatcg
      481 cgcaccccga taagcttctt gttggtgagc gccacgagcg catagccgcc ctcgatctgc
      541 gacagggcgt cgatgaagcg gtcgacgaag cgggatttcc gcgagcgggc gatcaggtgg
      601 aggatcacct ccgagtccga ggtcgactgg aagatcaccc cgttggagac cagctggtcg
      661 cgcagggtga ggaagttggt caggttgccg ttgtggcaga gcgccacgcc gcccgcctcc
      721 atgtccgcga acatcggttg gacgttgcgg atcaccgagc cgccggccgt agaatagcgg
      781 gtgtggccga tggcgaagcg gccgggcagg cgctccgtca ggtccatgcc gccgaacgcg
      841 tcgccgacgt gccccatgtg gcgttcggtg tggaaacgct gaccgtcgaa gcaggcgatg
      901 ccgcaggcct cctggccgcg atgctgcagg gcgtggaggc cgagcgctgt gaggccggtg
      961 gcttccgggc agtcgaacac cccgaacacg ccgcactcca accggggcga atcgtcgagc
     1021 gggtcccggt agggtggcga ccgtcgcgca gcagcgctca tcgggatttc tccaccaagt
     1081 cctcgatctc gccccgttgg cgggcgtcgt agccttctga cttcaatctg tcatccatgg
     1141 tgtcgtgcgc ggcgccatga agggccctgt cgaaggccgg tttgagccgt cctgcgatat
     1201 ccatgccctg cggcgccagc gccgtgatca gcttgcccat ggtctgggcg agcggccagg
     1261 tcgtcgcgcc gacgatccag tgcggctgca tgtccctggg cgtggcggcg ttgaacatca
     1321 ggttcagcgc ccccagcacg agcaggccgc gcgccaggcc gatgaagagg cccaagctgc
     1381 gatccaggaa gccgaggaag tctgtctgtt gcacctgtcg cgcgatgatg gctcccacca
     1441 gccttatcag ggcgaagacc acgacgaaga ccacgatcag cgcggcagcc gtggccaacc
     1501 aatcgagatg gatcagcttg cgcgccatcg gcgcgaacgt ggaaaggccg aagatcgcca
     1561 ccccggcggc gaccaccaag gcgatcaggg agacgatctc cagcacggcg ccgcggaaga
     1621 agcccatggc cgcggagatc gccagcagga tcagcacgat ggcgtcgaac tgggtcagac
     1681 ctagccccat gcgccgtctc cgatccgctg caccgcgtcc gccagccggg tcgccccggt
     1741 ggtcagcatg gcgccgccac cgtccatgcc ggccgggccc agcgcgcggc ggaagcccag
     1801 cttggcggcc tccttaagtc ggctgtccat gcggctcacc gagcgcacct cgcccgagag
     1861 gctgatctcg ccgaacacca cgcagtcctg cggcagggcc tggtcgaggc cggaggaggc
     1921 taacgcggcg gctgcggcga gatcggccgc gggctctgtg atgcgcaagc ccccggccac
     1981 gttcagatag acgtcgcggt cgccgaagga gaggccgcag cgcgcctcca gcaccgccag
     2041 caccatggcc aagcgtccgg aatcccagcc caccaccgcg cggcgtggcg tgccataggc
     2101 cgaaggcgcc acaagggcct gaaactccac caggaccggg cgcgaacctt cgatgccggc
     2161 gaagacggcc gcgccggccg cccgctcgcc ggaggtgttg aggaacaggg ccgaggggtt
     2221 cttcacttcc gccaggcccg cgtcgcccat ctcgaacacc ccgatctcgt cggtggcccc
     2281 gaagcggttc ttggcgccgc gcaggatgcg gaacggatag ccgcgctcgc cctcgaagga
     2341 gagcaccgcg tcgaccatgt gctcgatcac ccgggggccg gcgatggttc cttccttggt
     2401 gacgtggccg accagaatga tcgcgacgcc gcgcgacttg gcgagacgca ccagctcgcc
     2461 ggcggcggcg cgcacctggg tgaccgagcc cggacccgcc tcatgggcgt cgctccagag
     2521 cgtctggatg gagtcgatga cgacgaggtc gaaggcctcg cgcttgaggc cgtcggtgat
     2581 ggcgcggaga gacgtctcgg cggcgagctt aaccggggcc agcgccaggc ccatgcgctg
     2641 ggcgcggctg cgcacctgtt ccaccgcttc ttcgccggag atgtaggcgc acttggcccc
     2701 gcggagagcg gcctgggcca ccacctgcag catcagggtg gatttgccga cgcccgggtc
     2761 gccgcccagc aggatcgccg agcccgggac cacgccgccg ccgcagaccc ggtcgaactc
     2821 atccacgccg gtggagatgc gcggcggggc aggggtctcg tcctccaggc cctcgaaagc
     2881 caggccccgc gtgcggctgg ccttggacgg ggccatggcg cccggcgggc gagcctgcag
     2941 ctcctcgacc agggtgttcc acgcgccgca cgccgggcac tggcccgccc acttggtctg
     3001 gacggctcca caggactggc aggcgtagac ggcgccgtcg cgggccatgg cggtgagagg
     3061 gctcctgatt cggtaagcgg ccagtctagc cgaccggcgc gcctcgcgcc ttgcgcgcgc
     3121 ttgccgcggc gcggcgttgg gttaggctcc taggtgggca ggctgggaga tggttgcaat
     3181 gagcggtgtc gagccggaat caccaggatc agcgccggga ccgggaccgg gagcgggccc
     3241 agaaccgggg ccgaggccgg gcgtctcctt ccagagcctg atcgggcggg tcttgaacct
     3301 gttgctgcac ccccacgagg cctgggacgc catcgacgtt gagcccgcga cgatcgaggg
     3361 gctctaccgg ggctgggtgc tgccgctggc ggcgatcccg gcggtcgggc gcgccgtggg
     3421 tctgctatcg ttccgcggcg tcgagatctt cggcatccgc taccagccgg gctttgtcgg
     3481 aatcatcggc gacgccgtgg ccacctacgc cctgacgctg atttcggtct atcttctggc
     3541 cctgatcatc gaccagttcg ccgtgcagtt cggcggcgaa cgcagccgca cccaggcgtt
     3601 caaggtcgcc gcctattccg gcacagcggc ctgggtggcc ggggtcttca tgctgctgcc
     3661 gaccgccggc gggctcttcg ccctgctggg cgcgctttac agcctctatc tgctctatct
     3721 gggcctgccc aagctcatgc gctcaagtcc ggccttcacc ctgaactatt tcgccctgac
     3781 ccttgtggcg gccatcgtga tggcggtggt gatcggctcg gtcaccagtt gcgccaccaa
     3841 cttcggcggc ccgatccaca tctactgagc ctcgccgagg tagatccgct ccgcccgccg
     3901 gctgagccgg accatgattt cgtaggccac cgtgccggcg gcctcggcga agtcgtcgat
     3961 cggggcattc gggcccagaa gttcgacgga ctgcccaagc tgggcctcgg cgtcgccgag
     4021 gtcgatcgcc agcacatcca tgttggcgac cagcagtctg cgacgcgcgc ctgcaaacca
     4081 gacgtaggcg tcctttgcgg aacggatgat cccgtcggca tagccagccg cgacgaacgc
     4141 cacccgggtc ggcgccgtca tgcgcacact ctctccataa cccaacgggt cgcctgaatt
     4201 cagatggcgc acatcgagga tcggcgctgt cagggtggcg accgcgcgca ggcgttcgtc
     4261 cgggcgtccg cgacccccgc caccgaacag gcttacgccc ggccggacaa ggtcgaagcg
     4321 gtag
//
LOCUS       DATAJL010000719         3965 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_121217,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000719 DATAJL010000000
VERSION     DATAJL010000719.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3965)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121217"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..519)
                     /locus_tag="VHN39_13700"
     CDS             complement(<1..519)
                     /locus_tag="VHN39_13700"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2817447.1"
                     /translation="MLNAPRPLGLVTGASSGIGAALARELARDGHDLILAARRAEPMQ
                     ALAEDLRAEGASSTVIAIDLSKAGAAADLVAEIQSRGLVVDVLINAAGLGAHGRFDAA
                     NPLRVSEILQVNVVALTELTRLMLPAMVARGRGNVMLVSSTAAFQPGPQMAVYCATKA
                     YVLSFGEAIGHEL"
     gene            complement(618..929)
                     /locus_tag="VHN39_13705"
     CDS             complement(618..929)
                     /locus_tag="VHN39_13705"
                     /inference="COORDINATES: protein motif:HMM:NF042751.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6665 family protein"
                     /protein_id="HEX2817448.1"
                     /translation="MPSIEMLQTLLGRSGGEAADAALHDEIAQEQAAALGRMGRKAEA
                     ALAALKTHEGEGRAEVLRKAADAVWCFFVQREVMGLRDRARIVADYQIPREVMVRLGA
                     R"
     gene            complement(971..2611)
                     /locus_tag="VHN39_13710"
     CDS             complement(971..2611)
                     /locus_tag="VHN39_13710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2817449.1"
                     /translation="MAETSILETRAAQMFPILAPAEIERMRRFGTPRSYAPGEALVQV
                     GDTGHGLTVILSGEVPITNRDDRGAPQLIVTHGAGAFMGELAQLSGRPSLVDARAEGP
                     VEALIIAPERLRALLVAEAELGERIMRALILRRVGLLERGAGGPLIVGPADNGDVLRL
                     EGFLARNGHPHHRLDPAEDAEARALIERFHVGPGQLPIVLCPNGQLLRNPSERELARC
                     IGLVGPIDPNHLYDVAVVGAGPAGLATAVYAASEGLSVLVLDCRAFGGQAGASARIEN
                     YLGFPTGIGGLALMARAYNQAQKFGVETAIPDEVEALATDPASGELRLRLGGAEEVRA
                     RSVVIASGARYRRLAVEGIEPLEASSVHYWASPIEARLCAGQEVALVGGGNSAGQAVV
                     YLASQVAKVWMLVRGPGLEASMSNYLVERIAGLPNVEVVTNAQVTGVAGADGVIDTLS
                     WTVKGEGSHRSIRHLFLFIGADPNTDWLAGSGVALDAKGFVATGEGGSLATNVPGVYA
                     IGDVRAASVKRVAAAVGEGAQVVAALHKFLGGQAPATA"
     gene            complement(2649..3011)
                     /locus_tag="VHN39_13715"
     CDS             complement(2649..3011)
                     /locus_tag="VHN39_13715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2817450.1"
                     /translation="MTTREIANDLVALCKQGKFGESGEKYWADDVVSVEAGAPGGGDP
                     VSRGIEAARGKGEWWANNHEIHGVEVEGPYCNGDQFVVHFKMDVTPKGGQRMTMDEMG
                     VYTLKGGKIAEERFFYGG"
     gene            3176..3727
                     /gene="ilvN"
                     /locus_tag="VHN39_13720"
     CDS             3176..3727
                     /gene="ilvN"
                     /locus_tag="VHN39_13720"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEX2817451.1"
                     /translation="MTTDPQPASVYDLTPSEEVESLATFAVLVDNEPGVLHRLVGLFA
                     ARGYNIESLTVAETDHKAHTSRVTIVTRGTLHVLSQIEAQLTKMVSTRHVQDVTRDPN
                     GLERELALVKVAGTGPDRVEALRVADIFRAKVIDTTHESFVFELTGAPSKIDKFTDLM
                     RPLGLVEVSRTGVLSIQRGVEVL"
     gene            3767..>3965
                     /locus_tag="VHN39_13725"
     CDS             3767..>3965
                     /locus_tag="VHN39_13725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817452.1"
                     /translation="MRLVILISLTVAAACPAHAQLFHAPRSPPPAAAALAAPPPPDPN
                     AWWEGKLPAPPEAADPLGGRRM"
BASE COUNT          598 a         1479 c         1320 g          568 t
ORIGIN      
        1 cagctcgtgg ccgatcgcct cgccgaagct gagcacatag gccttggtcg cgcagtagac
       61 ggccatctgc ggcccaggct ggaaggcggc ggtggacgac accagcatga cgttgccccg
      121 gcccctggcc accatggccg ggagcatgag ccgggtcagc tcggtcaggg ccacgacatt
      181 gacctgcagg atttcgctca ccctgagcgg gttcgccgcg tcgaaacggc catgcgcgcc
      241 gaggccggcc gcgttgatca ggacgtcgac gaccaggccg cggctctgga tctccgccac
      301 caggtcagcg gctgcgccag ccttgctgag atcgatggcg atgacggtgg aactggcgcc
      361 ctcggcgcgg aggtcctcgg ccagcgcctg catgggctca gcacgccggg ccgccaggat
      421 gaggtcgtga ccgtcccggg ccaattcgcg cgccagagcg gcgccgatgc cactggacgc
      481 gccggtgacg agcccaagcg ggcgaggggc attcagcatg gcggacgccg tcgaacctcg
      541 gtcaacaccg ggggcaacgc ctcacgggag cgacagttgc cgcccttaag cgcaaccccg
      601 agagtcgatg acggctctta ccgcgcgccc agcctgacca tcacctcgcg cggaatctgg
      661 tagtcggcga cgatccgcgc gcggtcgcgc aggcccatga cttcgcgctg aacgaagaag
      721 caccagacgg cgtcggcggc ctttctcagg acctcggcgc ggccctcgcc ctcgtgagtc
      781 ttgagcgcgg ccagggccgc ctccgccttg cggcccatcc ggccgagggc ggcggcctgt
      841 tcctgggcga tctcgtcgtg cagggctgcg tcggcggcct cgccaccgga gcggccgagc
      901 agggtctgga gcatttcgat cgacggcatg agctgcatgt tggcgccgaa acgccgatcc
      961 gcaagccggt tcaggcggtc gccggcgcct ggccacccag gaacttgtgc agggcggcca
     1021 ccacctgggc gccctcgccc accgctgcgg cgacccgctt cacagaggcc gcgcggacgt
     1081 cgccaatggc gtagacgccc ggcacattgg tcgccagcga gcctccctcg ccggtggcga
     1141 caaagccctt ggcgtcaagc gccacgcccg agcccgccag ccagtcggtg ttggggtcgg
     1201 ccccgatgaa caggaagagg tgccggatcg agcggtgcga cccctcgccc ttcacggtcc
     1261 agctcagggt gtcgatcacc ccatcggcgc ccgcgacgcc ggtcacctgg gcgtttgtca
     1321 ccacctccac attgggcagg ccagcgatgc gctccaccag gtagttcgac atgctggcct
     1381 cgagaccggg tccacggacc agcatccaca ccttggcgac ctggctggcc agatagacca
     1441 ctgcctggcc cgcggaattg ccgccgccca ccagggccac ctcctggccg gcgcagagcc
     1501 gcgcctcaat gggcgaggcc cagtagtgga ccgaggacgc ttccagcggc tcaatgccct
     1561 cgaccgccag gcgccggtag cgcgcgcccg aggcgatcac caccgaacgg gcccggacct
     1621 cctccgcccc gcccagccgc agtcgcagct cgccgcttgc agggtcggtc gccagggcct
     1681 cgacctcgtc ggggatcgcc gtctcgaccc cgaacttctg ggcctggttg taggcccgtg
     1741 ccatcagcgc cagcccgccg atgccagtgg ggaacccgag gtagttctcg atccgcgccg
     1801 aggcgccggc ctggccgccg aaggcgcggc agtccagcac cagcaccgac aggccctccg
     1861 acgccgcata gaccgccgtc gccaggccgg cgggacccgc gccaaccacc gccacatcat
     1921 agaggtggtt ggggtcgatc gggcccacca ggccgatgca gcgcgctagc tcgcgctcgc
     1981 tcgggttgcg cagaagctgg ccattcggac agagcacgat gggtagttgg ccgggcccga
     2041 cgtggaagcg ctcgatcagc gcccgggcct cggcgtcctc ggcggggtcg agccggtgat
     2101 gcgggtggcc attgcgggcg aggaacccct ccagcctgag cacgtcgccg ttgtcggccg
     2161 ggcccacgat cagcggtccg cccgcgccgc gttccagcag cccgacccgg cgcaggatca
     2221 gcgcgcgcat gatccgctcg cccagctccg cctcggccac tagcagagcc cgcagccgtt
     2281 ccggcgcgat gatcagcgcc tcgaccggcc cctcggcgcg agcatccacc aggctgggcc
     2341 ggccggagag ctgcgccagc tcgcccatga aggcgcccgc gccgtgggtg acgatcagct
     2401 gcggcgcccc gcggtcgtcg cggttggtga tggggacttc acccgacaga atgaccgtca
     2461 ggccatggcc tgtgtcgccc acctggacca gggcctcgcc cggcgcgtag ctgcgcgggg
     2521 tcccgaaccg ccgcatccgc tcgatctcgg ccggcgccag gatggggaac atctgcgcgg
     2581 cgcgggtctc gaggatcgac gtctcagcca tggcctaacc gggccacgcc gagacgacga
     2641 aggcaagatc agccgccgta gaagaaccgc tcctcggcga tcttgccgcc cttcagggtg
     2701 tagacgccca tttcgtccat ggtcatccgc tgaccgccct tgggggtgac gtccatcttg
     2761 aagtggacca cgaactggtc gccgttgcag tagggtccct cgacctcgac gccgtggatc
     2821 tcgtggttgt tggcccacca ttcgcccttg ccgcgggccg cctcgatgcc gcggctgacg
     2881 ggatcgccgc cgccgggcgc gccggcctcg acgctgacca cgtcgtcggc ccagtatttc
     2941 tcgccgctct cgccgaactt tccctgtttg cacagcgcga caaggtcgtt ggcgatctct
     3001 cgagtggtca tggctattcc cttcgtttgc gaggcgagcc gcaacgggcc ctcgtttgag
     3061 acgcgcggga cctggcgaac acgacacccg ggcctcacgc gacctgggct caccgtagga
     3121 cggcctcgtg acagcgtgct ggcagcagca tgacgcccgg ggctataaga ccgccatgac
     3181 caccgatccc cagccggcct ccgtctacga cctcacgccc tccgaggagg tggagagcct
     3241 ggcgaccttc gccgtgctgg tggacaacga acccggggtc ctgcaccgcc tcgtcggcct
     3301 cttcgcggcc cgcggctaca atatcgagag cctcacggtc gccgagaccg accacaaggc
     3361 ccacaccagc cgcgtgacaa tcgtcacccg tggcaccctg cacgtcctct cccagatcga
     3421 ggcgcagctg accaagatgg tctccacccg ccacgtccag gacgtgaccc gcgaccccaa
     3481 cggcctggag cgtgagctgg ctctggtgaa ggtggccgga accggccccg accgcgtcga
     3541 ggccctgcgg gtcgccgaca tcttccgcgc caaggtgatc gacacgaccc atgagagctt
     3601 cgtcttcgag ctcaccggcg cgccctcgaa gatcgacaaa ttcaccgacc tgatgcggcc
     3661 gctggggcta gtcgaggtct cgcgcaccgg cgtcctgtcg atccagcgcg gcgtcgaggt
     3721 tctctagagc cgggaaccgc cggcggggct gagcggcttt gtcagcgtgc gcctcgtcat
     3781 cctcataagc ctgaccgtcg ctgcggcgtg cccggcccac gcccagcttt tccacgctcc
     3841 cagatcgccg ccgccggccg ccgcggctct tgcggccccg ccgccgccgg atccgaacgc
     3901 ctggtgggag ggcaaactcc ccgccccgcc cgaggccgcc gaccccctgg gcgggcgtcg
     3961 catgg
//
LOCUS       DATAJL010000720         2256 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69498,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000720 DATAJL010000000
VERSION     DATAJL010000720.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69498"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VHN39_13730"
     CDS             <1..279
                     /locus_tag="VHN39_13730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX2817453.1"
                     /translation="IMLRVRRRSSGEIEFSVTDTGPGVPDSDRERVVERFVRLENSRN
                     EPGAGLGLSLVAAVAEAHGGRLELAEGPGKVGEMGPGLRVALVLPRPA"
     gene            complement(502..1275)
                     /locus_tag="VHN39_13735"
     CDS             complement(502..1275)
                     /locus_tag="VHN39_13735"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817454.1"
                     /translation="MDETEELIRLCARACVAMISEAPTFELRMTRNSVLALSGEPVAD
                     LNMLFVGPSPDAEDFLTQGLTRVRERQLPLLAMMSPHVAQRLAPVAEGLGLTAAGTAP
                     LMVLRADTPVLPSRPCDIRRALGPELVRISGDLSSAAFSLPRDCVARCMDAGITETAG
                     VETYVAWAEDVPMSAVTVTPAGTTAGIWSMATPPEQQGKGMGRALLTGVIVDYRRRGV
                     ERFFLIATEAGRPLYASLGFEVVADFSAWVLGHSTQVHS"
     gene            1536..1748
                     /locus_tag="VHN39_13740"
     CDS             1536..1748
                     /locus_tag="VHN39_13740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817455.1"
                     /translation="MTGEFIAAYGGEASKPASLDELLRRLDRGDFDLVGVGRALLQDP
                     QWAVKVHQGRTDELMDFDRSAMMSLS"
     gene            complement(1803..>2256)
                     /locus_tag="VHN39_13745"
     CDS             complement(1803..>2256)
                     /locus_tag="VHN39_13745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817456.1"
                     /translation="AAPAAARAPGASAWDTACLTPIAGTEAVAWRPHRNPALLPWDSL
                     YGGTAGDASSAPSVERKPIDLPPMTMAFTVSGVKPDPTTPGAMIYSVDWMLDWGEGPQ
                     KVRTIRYRVTTAGLYYLFLGLRIKLNLGADPMQLVATVDPMQRGLVTD"
BASE COUNT          366 a          732 c          763 g          395 t
ORIGIN      
        1 atcatgctca gggtgcgcag gcggtcctcc ggcgagatcg aattctcggt gaccgatacc
       61 ggcccgggcg tgccggacag cgaccgagag cgcgtggtcg agcgcttcgt gcgcctggag
      121 aacagccgca acgagccggg cgcgggcctc ggcctgtcgc tggtcgccgc ggtggccgag
      181 gcgcacggcg ggcgcctgga gctcgccgaa ggccccggca aggtcggcga gatggggccg
      241 gggttgcggg tggcgctggt gttgccgaga ccggcctgag ggctgacttc gggtgtctgg
      301 gtgggtggaa gagcgaagtc ctctgccgat ccttcgtttg cgttaccaat tccgaccgct
      361 cgtgacacac gcccgacgtt cggaaggtcc gcttccggtg ctaggggcaa tgtccgcttt
      421 cgacccaaag cggcccctcg gaaatcaccc gaattgtatg agcaacgttc cctgcatcgt
      481 tggattggtc ctgtttcgcc cctagctgtg cacttgggtc gagtgaccca agacccaagc
      541 tgaaaagtcg gcgacaacct caaacccaag gctggcgtac agcggtcggc cggcctcggt
      601 agcaatcaga aagaacctct caacgccccg gcgtcgatag tcgacaatga cgccggtcaa
      661 aagggcgcgg cccatgccct tcccttgctg ttcgggcggc gtggccatac tccagattcc
      721 cgccgtggtc ccggcgggcg tgaccgtgac cgcgctcatg ggtacgtcct cggcccacgc
      781 tacgtaggtc tcgacgcccg cggtttcagt gatcccagcg tccatacatc tggccacgca
      841 gtcccgaggc aggctaaagg ccgctgaact aagatctccg gagattcgca ccagctccgg
      901 gcccagcgcc cggcgtatgt cgcatggcct gctcggcagg accggggtat cggcgcgcaa
      961 caccatcaga ggtgccgtac ccgccgccgt cagccccagg ccctcggcta ctggagccag
     1021 acgttgcgcc acatgcggac tcatcatggc gagtaacggc agttggcgct cccgcacgcg
     1081 ggtcaggccc tgcgtcagga aatcctcggc atccggcgat ggtcccacga atagcatatt
     1141 gagatcggct actggctcgc cgctgagggc aaggacgctg tttcgcgtca tacgaagttc
     1201 gaacgtgggc gcctcactta tcattgcgac gcatgcgcgc gcgcagagcc tgataagttc
     1261 ctctgtttca tccatcttgt cgtccccgcc tggcaggcag ttgggataga tgacgcaatg
     1321 cagtcaatgc tgtcaggtgc gtgccgaaat agcccttcga gcgaagtcgc ggcatgacca
     1381 aaccctgaag acgaacggat gttcgcggtc gacatcgcag ccaatgagcg tggccccacg
     1441 tgcttacgtt ttgtatgtcc gctctcgggc ggcgggctta ggaccgcttt cgacccatag
     1501 cggacattcg gaaagtccgc ttacggtcac gccagatgac cggcgagttc atcgcagcct
     1561 acggcggcga agcctccaag cccgcctcgc tggacgagct cctgcgccgg ctcgaccgcg
     1621 gcgacttcga cctggtcggc gtcggccgcg ccctcctcca ggacccgcag tgggcggtga
     1681 aggtccacca gggccgcacg gacgagctga tggactttga ccgatcggcg atgatgagtt
     1741 tgtcttaggg ggcgacaagc cggggaatgg atatcctgtc cccgtatttc ctgcgctagg
     1801 ccttagtctg tgaccaggcc ccgctgcatg gggtcgaccg tggccaccag ctgcatcggg
     1861 tcggcgccca ggttgagttt gatccgcagg cccaggaaca ggtagtagag gcccgcggtc
     1921 gtcacccggt agcggatggt gcgcaccttc tgcggcccct cgccccaatc cagcatccag
     1981 tcgacgctgt agatcatggc gcccggcgtg gtcgggtccg gcttcacgcc gctgacggtg
     2041 aaggccatgg tcatgggcgg caggtcgatg ggcttgcgct ccacgctggg ggcgctggag
     2101 gcgtcgccgg ccgtcccgcc gtagaggctg tcccaaggca gcagcgccgg gttgcggtgc
     2161 gggcgccagg cgacggcctc ggtgccggcg atgggcgtca ggcaggcggt gtcccaggcg
     2221 ctggcgcccg gggccctggc ggcggcgggc gccgcc
//
LOCUS       DATAJL010000721         3974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62670,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000721 DATAJL010000000
VERSION     DATAJL010000721.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3974
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62670"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1707)
                     /locus_tag="VHN39_13750"
     CDS             complement(<1..1707)
                     /locus_tag="VHN39_13750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2817457.1"
                     /translation="MNAIVRIALSRPYTFIVMAVMIMIFGVMAALRTPTDIFPEIKVP
                     VIGVAFNFAGLSAGEMGVRIVTPFERFLTTTVNDVEHIESQSITGIGIVKIYFQPGVD
                     IRTATAQVTSVAQTSVKQFPVGTTPPLILNYSASTVPILQLADSDKTLSEQKLFDLSQ
                     TVIRPAVTTVPGAATPYPYGGQIRQVQVDLDPQALQSKNLSATDVANAIANQNLILPV
                     GFLKVGSYQYNVRLNDAADSIAQLNDLPIKTAGGATILIRDVGQVRDGSGPQTNIVHV
                     DGGRAVLSTILKNGSASTLAVVQGVKDKLPGLKEQLPPTFKITALNDQSLFVKGAISS
                     VVKEGAVAAALTSLMILLFLGSWRSTVIIAISIPLAVLAAIAGLSAAGQTLNIMTLGG
                     LALAVGILVDDATVTIENINWHLEQGKDVRTAILDGANQIVTPAFVSLLCICIVFVPM
                     FMLKGVSGFLFVPMAMSVVFAMIASFVLSRTLVPTMAMYLLKPHAAEAHHGAGASRNP
                     VARFQKRFELGFARVRATYAELLQMAMGVRRPFLIGFMAVVVASFGLAPFLGSNFFPA
                     VDA"
     gene            complement(1824..3182)
                     /locus_tag="VHN39_13755"
     CDS             complement(1824..3182)
                     /locus_tag="VHN39_13755"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2817458.1"
                     /translation="MRPRELWRTTPFRLTVLNGAVFALAVMALMGLIYQQTAGYLTRQ
                     IDGIVVSEARNLTVGGAEHLPERVTQAVATDSRHIGYYGLFSAEGIWISGNVHALPAS
                     LPIDGVPHGIHAPNLQPGSRALVERMPWGEILFVGHDALVLSGLRGIIVNALLLSGGL
                     ILVLGLAAAAALSLRPLQRIDELRDASRAALKGELGVRLPVSRRRDEIDMLAGVANAM
                     MDEAERLLWEVKSVGDNVAHDLRTPLNRLRALLYRVHQETRLEGAEREMIDQALAETD
                     EMLTRFRALQRIGEIERRDRQAFFEPVRLQSVLEHVIELHAPLAEDRGVTLAADIAPD
                     APEISADPTLLFEAVSNVVDNALKFTPPGGKVIVRLTVREEGPRIEVADNGPGVPEAE
                     RDAVLQRFYRAARTRNEPGSGLGLSIVTAIARLHHFTLVLEDAKPGLRVALNCWPRGF
                     DG"
     gene            complement(3169..3849)
                     /locus_tag="VHN39_13760"
     CDS             complement(3169..3849)
                     /locus_tag="VHN39_13760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017979470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2817459.1"
                     /translation="MPKILAIEDDPTTGREIVAELEQHGFTVEWVDDGRQGMARAVSG
                     DFDAVILDRMLPGSDGLAIVTAMRDADVDIPVLMVSALSDVDERIRGLRAGGDDYMTK
                     PFNSEELTARLEVLLRRRAAAPRDMRLSVADLELDLISRTAHRQGAEIRLMPTEYKLL
                     EFMMRNSGQILTRTMIFEAIWGYHFDPGTNLIDVHLGRLRRKIDRPGLPPLIHTVRGS
                     GYALHAPA"
BASE COUNT          656 a         1305 c         1382 g          631 t
ORIGIN      
        1 ggcgtccacc gccgggaaga agttgctgcc caggaagggc gcgagtccga aggacgccac
       61 caccacggcc atgaagccga tcaggaacgg ccggcgcacg cccatcgcca tctgcagcaa
      121 ctcggcatag gtcgcgcgca cccgggcgaa gcccagctcg aaccgcttct ggaaccgcgc
      181 caccgggttg cgcgaggcgc ccgcgccatg gtgagcctcc gcggcgtggg gcttcagcag
      241 gtacatcgcc atggtcggga ccagggtccg cgacagcacg aaggaggcga tcatcgcgaa
      301 gacaaccgac atggccatgg ggacgaacag gaagcccgag acgcccttca gcatgaacat
      361 cggcacgaag acgatgcaga tgcaaagcag agagacaaag gccggcgtga cgatctgatt
      421 ggcgccgtcg aggatggcgg tgcggacgtc cttgccctgc tccaggtgcc agttgatgtt
      481 ctcgatggtc accgtggcgt cgtccaccag gatgccgacc gccagcgcca ggccgcccag
      541 ggtcatgatg ttcagcgtct ggccggccgc cgagaggccc gcgatcgccg ccagcacggc
      601 cagcgggatc gagatggcga tgatcaccgt cgagcgccag ctgccgagga acaggaggat
      661 catcaggctg gtcagggccg cggcgaccgc accttccttg accacgctgg agatggcccc
      721 cttcacgaac agcgactggt cgttcagcgc ggtgatcttg aaggtcggcg gcagctgctc
      781 cttcaggccc ggcagcttgt ccttgacccc ttgcacgacc gccagcgtcg aggccgagcc
      841 gttcttgagg atcgtcgaga gcaccgcgcg gccgccatcc acgtggacga tgttggtctg
      901 cggcccggag ccgtcacgga cctggccgac gtcgcgaatg agaatagtcg ccccgcccgc
      961 ggtcttgatc ggcagatcgt tgagctgggc gatggagtcg gccgcgtcgt tgaggcggac
     1021 attgtactgg taggacccca ccttcaggaa acccaccggc aggatcagat tctggttggc
     1081 gatggcgttg gcgacatcgg tcgccgagag gttcttggat tgcagcgcct gagggtcgag
     1141 gtcgacctgg acctggcgga tctggccgcc gtagggatag ggcgtggccg cgccgggcac
     1201 ggtggtcacc gccggccgga tcaccgtctg gctgagatcg aacaacttct gctcggagag
     1261 cgtcttgtcg gagtccgcca actgcaggat cggcacggtc gacgccgagt agttgaggat
     1321 caggggcggc gtcgtcccca ccggaaattg cttgaccgaa gtctgggcca ccgaggtcac
     1381 ctgggcggtg gctgtgcgga tgtcgacccc gggctggaag tagatcttca cgataccaat
     1441 gccggtgatc gactggctct cgatgtgctc cacgtcgttg acggtggtgg tcaggaaccg
     1501 ctcgaacggc gtgacgatcc gcacccccat ctcgcccgcc gacaggcccg cgaagttgaa
     1561 ggcaacgccg atcaccggca ccttgatctc cgggaagatg tcggtgggcg tgcgcaatgc
     1621 cgccatgacc ccgaagatca tgatcatcac cgccatcacg atgaaggtgt agggccgcga
     1681 cagggcgatg cggacgatgg cgttcaagcg gtcggctcca ggcgggaccg gcgcataacc
     1741 tcgccataat ccccggggcg tttccttgga ccaactcggg ccgtcgaggc caatgaagat
     1801 agttttaagt tcgcgcggcc ggatcagccg tcgaagcccc gcggccagca gttgagcgcc
     1861 accctgaggc cgggcttggc gtcctccagc accagcgtga agtggtgcag gcgggcgatg
     1921 gcggtgacga tgctgaggcc caggccggag cccggctcat tgcgggtgcg cgcggcgcga
     1981 taaaaccgct gcagcaccgc gtcccgctcg gcctcgggca cgccggggcc gttgtcggcc
     2041 acctcgatcc gcggcccctc ctcgcggacc gtcaggcgga cgatgacctt gccgccgggc
     2101 ggggtgaact tcagggcgtt gtcgaccaca ttgctgaccg cctcgaagag cagggtcggg
     2161 tcggccgaga tctccggcgc gtctggcgcg atgtcggcgg cgagcgtcac gccgcggtcc
     2221 tcggccagcg gcgcgtgcag ctcgatcaca tgctccagca cgctctgcag gcgcacaggc
     2281 tcgaagaagg cctggcggtc acggcgctcg atctcgccga tccgctgcag ggcgcgaaag
     2341 cgggtcagca tctcgtcggt ttcggccaga gcctggtcga tcatctcccg ctcggcgccc
     2401 tccagcctgg tctcctgatg cacccggtaa agcagggcgc gcaggcggtt gagcggggtg
     2461 cgcaggtcgt gggcgacatt gtcgccgacg ctcttgacct cccagagcag ccgctcggcc
     2521 tcgtccatca tggcgttggc gacgccggcc agcatgtcga tctcgtcgcg tcggcgcgac
     2581 accggcagcc gcaccccgag ttcgcccttc agcgccgcgc ggctggcgtc ccgaagctca
     2641 tcgatgcgct gaaggggacg aaggctgagg gcggcggcgg ccgcgaggcc gagcaccagg
     2701 atcagcccgc cggagagcag cagagcgttg acgatgattc cccgaagccc gctcagcacc
     2761 aaggcgtcgt ggccgacgaa gaggatctcc ccccagggca tccgctcgac cagggcgcga
     2821 gatcccggtt gcaggtttgg cgcgtgaatt ccgtgcggca cgccgtcgat cggcaggctg
     2881 gccggcaggg cgtggacgtt gccggagatc cagattccct ctgctgagaa gaggccgtag
     2941 tagccgatgt gccggctgtc ggtggccacc gcctgggtga cccgctcggg taggtgttca
     3001 gccccgccga ccgtcaggtt ccgcgcctcg ctgaccacga tcccgtcgat ctggcgtgtg
     3061 aggtagccgg cggtctgttg gtagatcagc cccatcagcg ccatgacggc cagagcgaag
     3121 accgccccgt tcaggacggt cagccggaac ggcgtggtgc gccagagctc acgcgggcgc
     3181 atggagcgcg tatcccgagc cgcggacggt gtggatcagg ggcggcagcc ccggccggtc
     3241 gatcttgcgt cgcagccgcc ccagatggac atcgatgagg ttggtgccag ggtcgaaatg
     3301 gtaaccccag atcgcctcga agatcatcgt ccgcgtcagg atctggccgg agttgcgcat
     3361 catgaactcc agcagcttgt actccgtggg catcagccgg atctccgcgc cctgacggtg
     3421 cgcggtgcgg ctgatcaggt cgagttccag gtcggcgacg ctcaacctca tgtcgcgggg
     3481 cgccgcggcg cggcggcgca acagcacctc cagacgcgcg gtcagctctt cggagttgaa
     3541 gggcttggtc atgtagtcgt cgccgccggc gcgcaggccc cggatgcgtt cgtccacgtc
     3601 gctgagcgca ctgaccatca ggactggaat atcgacgtcg gcgtcgcgca tggccgtgac
     3661 gatggccaag ccgtcggagc cgggcagcat gcggtcgagg atcaccgcgt cgaaatcgcc
     3721 gctgaccgcg cgggccatgc cctggcggcc atcgtccacc cattccacgg tgaagccgtg
     3781 ctgctccagt tccgccacga tttcgcgccc cgtggtggga tcatcctcga tcgccaggat
     3841 cttcggcatc gcgttttccg ccggcgaatt cgcctgtcgc agagtggtcg ccacgcagga
     3901 gccgccgcgt caagccggcg atcgggctgc cgtcctgcgg gccggcgcga ttttccggtg
     3961 tacgtggcct gccc
//
LOCUS       DATAJL010000722         2979 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25453,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000722 DATAJL010000000
VERSION     DATAJL010000722.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25453"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VHN39_13765"
     CDS             <1..407
                     /locus_tag="VHN39_13765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817460.1"
                     /translation="FKLERDAAREARAEAREAEADEAEADRQGRLEAACAAPGPIAAR
                     KTRVSNLLNRLIWNECEGDSEEYEVLSDDLTSRLEEAALSDDFETLPIEVLAGRIIAD
                     MGLSGELTLSLCETRAAGASTPHRTPEPADTG"
     gene            complement(627..1028)
                     /gene="rplS"
                     /locus_tag="VHN39_13770"
     CDS             complement(627..1028)
                     /gene="rplS"
                     /locus_tag="VHN39_13770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEX2817461.1"
                     /translation="MNMIETLEKEEADRLLATRKIPELQPADTVRVNVKIKEGERERV
                     QAYEGVCIARGGHGINESFTVRKISFGEGVERLFPVMSPNIESIEVKRRGVVRRAKLY
                     YLRDRRGKSARIAERSMVRADEAAPAETEEA"
     gene            complement(1048..1758)
                     /gene="trmD"
                     /locus_tag="VHN39_13775"
     CDS             complement(1048..1758)
                     /gene="trmD"
                     /locus_tag="VHN39_13775"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEX2817462.1"
                     /translation="MSFDATVLTMFPEAFPGPLGVSLIGTAWREQGLWALETVDIRAF
                     SKDKRGFLDDTPSGGGPGQVMRADVIASALDSVERRQRPLLYMSARGQPLTQARVREW
                     AAGPGLIVLCGRFEGVDQRVIEARGFEEVAVGDAVLAGGEAAALVTIEACVRLVPGVL
                     GHAESLAEESFEDGLLEHPQYTRPRTFEGLDIPEVLLGGNHAEVRKWRQAQREKTTRE
                     QRPDLWARHPANQQAKGD"
     gene            1835..2707
                     /locus_tag="VHN39_13780"
     CDS             1835..2707
                     /locus_tag="VHN39_13780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HEX2817463.1"
                     /translation="METENLTETMKLERIEVNLFRGTTADNSPGRIFGGQVIGQSLLA
                     AYETVPDRICHSLHCYFIRPGDPTVPIVFEVDRSRDGGSFTTRRVIAIQHGQLIFNLA
                     ASFMEAQDGFEHQAQMPKTKSWDELPDDAEQQKAAMEAMKDLPEEAKRWMSRPRPIEM
                     RSADGRSFFQGGGPQEPTSEVWFRAREPIGDDQHMHQVICAYASDMNLLSTAMRPHKV
                     HWQTPGFQSASLDHAMWFHKPLNFNDWHLYSQDSPSASGGRGFIRGSIFAADGTLVAS
                     VAQEGLMRMRAPKG"
     gene            complement(2714..>2979)
                     /gene="rimM"
                     /locus_tag="VHN39_13785"
     CDS             complement(2714..>2979)
                     /gene="rimM"
                     /locus_tag="VHN39_13785"
                     /inference="COORDINATES: protein motif:HMM:TIGR02273.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEX2817464.1"
                     /translation="FIPRALLPPVEDEDEFYIADLVGMSVVSAEGDLLGQVRSVRDFG
                     AGDLLEVAPPAGESWWLPFTKEAVPELRVDERTIVALRPDEIE"
BASE COUNT          498 a         1068 c          964 g          449 t
ORIGIN      
        1 atttcaagct ggaacgcgac gctgcgcgcg aggcgcgggc tgaggcccgc gaggccgagg
       61 cggatgaagc tgaggccgac cgacaaggcc gcctcgaggc cgcctgcgcc gcgcccgggc
      121 caatcgcggc gcgcaagacc cgcgtcagca acctgctcaa ccgcctcatc tggaacgagt
      181 gcgagggcga cagcgaagaa tacgaggtcc tctccgacga cctcaccagc cgcctcgaag
      241 aagccgccct cagcgacgac ttcgagacgc tccccatcga ggttctcgcc ggccgcatca
      301 tcgccgacat ggggctgtcg ggcgaactga ccctcagtct ctgtgagacg cgggcggcgg
      361 gagcttcgac gccgcaccga acgcccgagc ctgccgacac gggctagacg cgccagtttc
      421 ttcccgcagg gggaggtgga tcgcggcgca gccgcgagac ggagggggtt tcagccgctg
      481 agcccgcgat agccgacatc ccgaacgccg gagaggaaac cccctcagtc agtcttcgct
      541 gacagcgccc cctgtggggg agcaataacg aaaacggcgg ccgcatcgct gcggccgccg
      601 tctcgaattc gttgaactct gaaagcctag gcttcctcgg tctccgccgg cgcggcctcg
      661 tcggcgcgca ccatggagcg ctcggcgatc cgggcggact tcccgcggcg gtcgcgcagg
      721 taatagagct tggcgcgacg gacgacgccg cggcgcttca cttcgatgga ttcgatgttc
      781 gggctcatca ccgggaacag ccgctcgacg ccttcgccga agctgatctt gcgcacggtg
      841 aagctctcgt tgatgccgtg gccgccgcgc gcgatgcaga cgccttcgta ggcctggacg
      901 cgctcgcgct cgccttcctt gatcttcacg ttgacgcgca cggtgtcggc gggctggagc
      961 tcggggattt tgcgagtggc cagaagccgg tcggcttctt ccttctcgag ggtctcgatc
     1021 atattcatcg ttctggtcct tccgggctta atcgcccttt gcctgttgat tggcgggatg
     1081 ccgcgcccac aagtccggcc gctgctcccg cgtggtcttc tcccgctggg cctgccgcca
     1141 cttccgaacc tcggcgtggt tgccacccaa caggacctcg gggatatcga gcccttcgaa
     1201 cgtccgcggt cgcgtgtact gcggatgctc gaggagcccg tcctcgaagc tttcttcggc
     1261 caaactctcg gcgtgtccca gaacccccgg aaccagccga acgcaggcct cgatcgtcac
     1321 cagcgccgcc gcctcgccac cggccaggac cgcgtcgccc acggcgacct cctcgaaccc
     1381 ccgagcctcg atgacccgtt gatccacccc ttcgaaccga ccgcacaaga cgatcagtcc
     1441 aggacctgcg gcccactcac gcacgcgcgc ctgggtcagg ggctggcccc gggcgctcat
     1501 gtacaaaagc ggccgttgcc gccgctccac gctgtccagc gcagaggcga tcacgtccgc
     1561 ccgcatcacc tgtccagggc cgccaccgga gggggtgtcg tcgaggaagc cgcgcttatc
     1621 tttggaaaac gcccgaatgt ccactgtttc caacgcccaa agcccctgct cgcgccaggc
     1681 ggtcccgatc agcgagaccc ccagcgggcc cggaaaggcc tccgggaaca tggtcaggac
     1741 ggtggcgtcg aaggacatgg cgggcccaaa gggcgtcatg acgccgcgcc gtcaagtctt
     1801 gtggccaagc cggctggagc gtaagcggcg ccacatggaa accgagaacc tgaccgagac
     1861 gatgaagctg gagcggatag aggtgaacct cttccgcggg accacggcgg acaactcgcc
     1921 cgggcggatc ttcggcggcc aggtgatcgg ccagtcgctg ctggcggctt atgagacggt
     1981 gccggaccgc atctgccatt ctctgcactg ctacttcatc cgcccgggcg acccgaccgt
     2041 ccccatcgtc ttcgaggtgg accggtcccg cgacggcggc agcttcacca cccggcgcgt
     2101 gatcgccatc cagcacggcc agctgatctt caacctcgcc gcctcgttca tggaggcgca
     2161 ggacgggttc gagcatcagg cgcagatgcc caagaccaag tcctgggacg agctgcccga
     2221 cgacgccgag cagcaaaagg cggccatgga ggccatgaag gatctgccgg aagaggccaa
     2281 acgctggatg tcgcgcccgc gccccatcga gatgcgctcg gccgacgggc gcagcttctt
     2341 ccagggcggc ggcccgcagg agcccaccag cgaggtctgg ttccgcgccc gcgagccgat
     2401 cggcgacgac cagcacatgc accaggtgat ctgcgcctac gcctcggaca tgaacctgct
     2461 ctccaccgcc atgcggccgc acaaggtcca ctggcagacg ccgggcttcc agtcggccag
     2521 cctcgaccac gccatgtggt tccacaagcc gctcaacttc aacgactggc acctctattc
     2581 gcaggacagc cccagcgcgt cgggcggccg cggcttcatc cgcggctcga tcttcgcggc
     2641 ggacggcacc ctggtggcgt cggtggccca ggaaggcctg atgcggatgc gggcgccgaa
     2701 gggctaggcg ggcctattcg atctcgtcgg gccgcagcgc gacgatcgtc cgctcgtcga
     2761 cccgcagctc gggcacggcc tccttggtga acggcagcca ccagctttcg ccggccggcg
     2821 gggcgacctc cagcaggtcg ccggccccga agtcgcgcac cgagcggacc tggcccagga
     2881 ggtcgccctc ggcgctgacc acgctcatgc ccaccaggtc ggcgatgtag aactcgtcct
     2941 cgtcctccac gggcggcaag agcgcgcgcg ggatgaaga
//
LOCUS       DATAJL010000723         1543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69536,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000723 DATAJL010000000
VERSION     DATAJL010000723.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69536"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..682
                     /locus_tag="VHN39_13790"
     CDS             <1..682
                     /locus_tag="VHN39_13790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX2817465.1"
                     /translation="LDADDTLWHNETLFRLTQDRFRALMADVAEAEVLDARLAAVERR
                     NLALYGYGVKGFTLSLIETAMELTGGEPPGRIIADILAAGREMLAHPAELLSGVEHAL
                     AELSGAYRLVLITKGDLLHQEQKLAASGLGDLFAAVEIVSEKDARTYETVFARHGTGA
                     AEAAMCGNSIRSDILPALQAGAWAAHVPYPLTWAHEMAEAPVGHPRFAELATIGDLPG
                     WLQEMSQT"
     gene            728..1102
                     /locus_tag="VHN39_13795"
     CDS             728..1102
                     /locus_tag="VHN39_13795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817466.1"
                     /translation="MARIIAGLLAAILGANGLAMLIAGLWWYGAVPGVTATGPFNPHF
                     VRDIGAAYLVTAAGLGAFAWRPREAWPALVGAAAFLTLHAAIHVFDAACGTRPLADIM
                     RDFAGVYLPAILTLAIALRRPA"
     gene            1116..>1543
                     /locus_tag="VHN39_13800"
     CDS             1116..>1543
                     /locus_tag="VHN39_13800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817467.1"
                     /translation="MLKAMFSRYLDKFERTWSYDASYMRQVLAVSPGSFLKFMLGTAA
                     ANRKAAPAEAIVAAGLAGVLAEDCGPCTQIGVDMATAGGINPDILRAILAGDEPAMGE
                     TAALAWRFARASLARDMATADPLRDEIVRRWGEKALVAIG"
BASE COUNT          223 a          585 c          502 g          233 t
ORIGIN      
        1 cctcgatgcc gacgacaccc tttggcacaa tgagacgctc tttcgactga ctcaggaccg
       61 gttccgcgcc ctgatggccg atgtcgcgga ggcagaggtc ctcgacgcgc gcctggcggc
      121 cgtcgagcgg cggaacctgg cgctctacgg ctatggggtg aagggcttca ccctatcgct
      181 gatcgaaacc gccatggagc tgaccggcgg cgagccgccc ggccggatca tcgccgacat
      241 cctggccgcc ggccgcgaga tgctggccca tccggcggag ctcctgtcgg gcgtcgaaca
      301 cgccctggcg gagctctcag gcgcctaccg tctggtgctg atcaccaagg gcgacctttt
      361 gcatcaggag cagaagctgg cggccagcgg cctcggcgac ctcttcgccg ccgtcgagat
      421 cgtcagcgag aaggacgcca ggacctacga gaccgtcttc gcccggcacg gcacgggcgc
      481 ggcggaggcg gccatgtgcg gcaattccat ccgctcagac atcctgccgg cgctccaggc
      541 cggcgcctgg gccgcccacg tgccctatcc cctgacctgg gcccacgaga tggccgaggc
      601 gccggtgggc catccgaggt tcgcggaact cgccacgatc ggcgatctgc cggggtggct
      661 gcaggagatg tcacaaacct gaccgctgcc gcgtcttgat cccgataccc ctcgggaagg
      721 acgctccatg gctcggatca tcgcaggcct gctcgccgcc atcctcggcg ccaacggcct
      781 ggccatgctg atcgcaggcc tctggtggta cggcgcggtt ccgggcgtca cggccaccgg
      841 tcccttcaac ccccacttcg tccgagacat cggggcggcc tatctggtca ccgccgcagg
      901 cctcggcgcc ttcgcctggc gaccgcggga ggcctggccc gccctggtcg gcgcggcggc
      961 cttcctgacc ctgcacgccg ccatccacgt cttcgacgcc gcctgcggga cccggccgct
     1021 ggccgacatc atgcgcgatt tcgccggcgt ctacctgccc gcgatcctca ccctagccat
     1081 cgcccttcga cgccccgcct gaaaggagcc ttccgatgtt gaaagccatg ttctcccgct
     1141 acctggacaa gttcgagcgc acctggagct acgacgcgag ctacatgcgc caggtcctgg
     1201 ccgtcagccc cgggagcttc ctgaaattca tgctcggcac ggccgccgcc aaccgcaagg
     1261 ccgccccggc cgaggccatc gtcgcggccg gcctcgcggg cgtgctcgcc gaggactgcg
     1321 ggccctgcac ccagatcggc gtcgacatgg cgaccgcggg cgggatcaac cccgacatcc
     1381 tgcgcgccat cctggcgggg gacgagccgg ccatgggcga gactgcagcc ctcgcctggc
     1441 gcttcgcccg ggccagcctc gcccgcgaca tggctacagc cgaccccctg cgcgacgaga
     1501 tcgtccgccg ctggggcgaa aaggccctgg tggccattgg ctt
//
LOCUS       DATAJL010000724         3894 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108358,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000724 DATAJL010000000
VERSION     DATAJL010000724.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3894
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108358"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1521)
                     /locus_tag="VHN39_13805"
     CDS             complement(<1..1521)
                     /locus_tag="VHN39_13805"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M13"
                     /protein_id="HEX2817468.1"
                     /translation="MKIQWLGAAAAAALLTASPTLAQVTEAPIIKLHPAKPNPKPKPK
                     ATAAKSAPAVATPAAPAPDLSKAARMGTWGFDLSGRDTSTMPAKDFFQYANGTYEKTM
                     VIPADRVSYGAFDSLNELSQARLHGLLDKTAADTAAPDSLGKGGEQGKVGALYRSFMD
                     ETKVNGLGGKPMAADLAAIKAEKTLADVARAMGKAQHTFGGSVFAASVQVDGKDPDHY
                     AVYLNQAGLNLPDRDYYLEASFAEKKAKYETYVAQMLKLEGWPNPVANAKAIVALETE
                     IAKASWTKEEQRDDNKMYNAYETAKLAALAPGFDWAAFMAGAGLAKTAHVVAQENTAF
                     PKIAAIYAKTPLATLKAWQAFSLADQAGPYLAKQFIDTRFAFRGTVLNGQPAQRPRWK
                     RGVQLVDGQIGEALGKVYVGEYFPAQSKAKMLTLVADIQTAMRGRIEHLDWMSGPTKA
                     KALEKLSQFTVKIGYPDKWRDYSGLTIKADDLYGNVNRASTFDWDFRVGRLGGPVDR"
     gene            complement(1626..2087)
                     /locus_tag="VHN39_13810"
     CDS             complement(1626..2087)
                     /locus_tag="VHN39_13810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEX2817469.1"
                     /translation="MRAPLFAALAFVALTAPAAAFGAGAIEVMQPWSRPAVAGTNGIG
                     YMVLVNKGATADALEKVESPLAARVEMHSSSMAGGVMSMKKEDRVPVPAGGRTTFGPG
                     AYHLMLIGLTRTLAPGDQVPATLSFASGARIKAAFTVSAGMGPPAMAGMAH"
     gene            2170..>3894
                     /locus_tag="VHN39_13815"
     CDS             2170..>3894
                     /locus_tag="VHN39_13815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX2817470.1"
                     /translation="MTPHVQPGAYKDVVLFLATAGVVVPLFRRWKLSPILGFLGAGVL
                     LGPYGLGSLVRDAPWLSVLTIDNPDEVAQLAEFGVVFLLFMIGLELSWERLRSLRRYV
                     FGLGAAQVTLSLAATAGAAFALGQPPGAALAIGAALALSSTAIVMPILTEQKRQHSLA
                     GRTTFSVLLFQDLAVAPILVTLTLLGRQGGAPAFTPNLLLAFAPAVAGVIGLLVVGRL
                     VLRPMLRSVARARSEELFVAACLLVVIGSGLVSAFTGLSMALGAFIAGLLLAETEFRH
                     EVEVTIEPFKGLLLGLFFLSIGIGLDLPLLLARPGEVLGAAVGLTLANGAVVFALSKL
                     FRLRTRAAAEAALLLAGAGEFAFVILGQAMDQRLVDRTTGQALLVAATLSMVSIPLLA
                     ALGARIGGRKISPADLPEAQGEAPPEPRVLIAGYGRVGRLVGEMLRRHEIAWVAVEQD
                     ARLVETARRAGETLFYGDAARSDFLARCGLAEAPALVVTMDDPDGAEAIVAVARALRP
                     DLIIVARARDARHAQRLYDLGVTDAVPETVEASLQLSEALLVEIGVPMGLVIASIHER
                     RDEFRKALN"
BASE COUNT          480 a         1339 c         1377 g          698 t
ORIGIN      
        1 gcggtccacc ggcccgccca gccgcccgac cctgaagtcc cagtcgaagg tcgaggcgcg
       61 gttgacgttg ccgtagaggt catcggcctt gatcgtcagg ccggagtagt cgcgccactt
      121 gtcggggtag ccgatcttga cggtgaactg cgacagcttc tccagagcct tggccttggt
      181 gggcccgctc atccagtcca ggtgctcgat gcggcccctc atggcggtct ggatgtcggc
      241 caccagggtc agcatcttgg ccttgctctg cgccgggaaa tattcgccca catagacctt
      301 gccgagcgct tcgccgatct ggccgtcgac cagctggaca ccgcgcttcc agcggggccg
      361 ctgcgccggc tggccgttca gcaccgtgcc gcggaacgca aagcgggtgt cgatgaactg
      421 tttggcgaga tagggcccgg cctgatcggc gaggctgaag gcctgccagg ccttcagcgt
      481 ggcgagcgga gtcttggcgt agatcgccgc gatcttcggg aaggcggtgt tttcctgcgc
      541 caccacgtgg gcggtcttcg caaggcccgc gccggccatg aacgccgccc agtcgaagcc
      601 gggcgccaga gccgccagct tcgcggtctc gtaggcgttg tacatcttgt tgtcgtcgcg
      661 ctgctcttcc ttggtccagg aagccttggc gatctcggtc tccagcgcga cgatcgcctt
      721 ggcgttggcc accgggttcg gccagccctc cagcttcagc atctgggcga cataggtctc
      781 gtacttggcc ttcttctcgg cgaaggaggc ctcgaggtaa tagtcccgat ccggcaggtt
      841 caggcccgcc tgattcagat agaccgcgta gtggtcggga tccttgccat ccacctgcac
      901 cgaggccgca aagaccgagc cgccgaaggt gtgctgcgcc ttgcccatgg cgcgggcgac
      961 gtcggccagc gtcttctcgg ccttgatcgc cgccaggtcg gcggccatgg gcttgccgcc
     1021 cagcccattg accttggtct cgtccatgaa gctgcggtag agcgcgccta ccttgccctg
     1081 ctcgcccccc ttgcctagcg agtcgggggc cgcggtgtcg gcggcggtct tgtcgagcag
     1141 gccgtgcagg cgggcctgcg acagttcgtt caggctgtcg aaggcgccgt agctcacccg
     1201 gtcggccggg atcaccatgg tcttctcata ggtcccgttg gcgtactgga agaagtcctt
     1261 ggccggcatg gtcgaggtgt cgcgcccgga gaggtcgaaa ccccaggttc ccatccgcgc
     1321 ggccttggaa aggtccggcg ccggcgcggc gggcgtggcg accgccgggg cggacttggc
     1381 ggcggtcgcc ttgggcttgg gcttagggtt tggcttggcc gggtggagct tgatgatcgg
     1441 agcctcggtg acctgggcga gggtcgggct ggccgtgagg agggcggcgg ccgcggccgc
     1501 gccgagccat tgaatcttca tgtgacgtgg gccttcgaga ggttgatgtg atgcgaccat
     1561 gccccgtgcg ggcgcggttc ggatgttaca ttttcgtcag gaagccgccg gggtgtgacg
     1621 ccggctcagt gcgccatccc ggccatggcc ggcgggccca tgccggcgct gaccgtgaag
     1681 gccgccttga tcctggcccc gctggcgaaa ctgagggtcg ccggaacctg gtcgccgggc
     1741 gcaagcgttc gcgtcaggcc gatcagcatc aggtgatagg cgccggggcc gaaggtggtg
     1801 cgcccgcccg ccgggaccgg gacccggtcc tccttcttca tcgacatcac cccgccggcc
     1861 atcgaactcg agtgcatctc cacgcgcgcc gccagcgggc tttccacctt ctccagggcg
     1921 tcggccgtcg cgcccttgtt gaccaggacc atgtagccga tcccgttggt cccggcgacg
     1981 gcgggccggc tccagggctg catgacctcg atggctcccg cgccgaacgc cgcggcgggc
     2041 gctgtgagcg cgacgaaggc cagggcggca aacagggggg ctctcatgcg gcgccttcct
     2101 acgccgatcc gatgatttct caaggcgcgg cgctgggcca tagtcgcccc tggccaaccc
     2161 ggagatcgca tgacacccca cgtccagcct ggcgcctaca aggacgtggt cctgttcctg
     2221 gccacggccg gtgtggtcgt gccgctgttc cggcgctgga agctgtcgcc cattctgggg
     2281 ttcctgggcg cgggcgtgtt gcttggaccc tatggactgg gcagccttgt gcgcgacgcc
     2341 ccctggctct cggtcctgac catcgacaac cccgacgagg tcgcccaact cgccgaattc
     2401 ggcgtggtgt tcctgctgtt catgatcggg ctggagctgt cgtgggagcg gttgcggagc
     2461 ctgcgccgct acgtcttcgg cctgggcgcg gcccaggtga cgctcagcct ggcggccacc
     2521 gccggggcgg ccttcgcgct cggccaaccc cccggcgcgg ccctggccat cggcgcggcg
     2581 ctggcgctgt cgtccaccgc catcgtcatg ccgatcctga ccgagcagaa gcggcagcat
     2641 tcgctcgccg gccggaccac attctcggtg ttgctgttcc aggacctggc cgtggcgccg
     2701 atcctggtga ccctcaccct gctgggccgt cagggcgggg cgcccgcctt caccccgaac
     2761 ctgctgctgg ccttcgcgcc ggcggtcgcc ggcgtcatcg gcctcctggt ggtcggccgg
     2821 ctggtgctgc ggcccatgct tcgctcggtg gcccgcgcca ggagcgagga gctgttcgtg
     2881 gccgcctgcc tcttggtggt gatcggctcg ggcctggtca gcgccttcac cggcctctcc
     2941 atggcgctgg gcgccttcat cgccgggttg ctgctggccg agaccgaatt ccgccacgag
     3001 gtcgaggtga ccattgagcc cttcaagggc ctgctgctgg gcctcttctt cctgtccatc
     3061 ggcatcggcc tggatctacc gctgctgctg gcgcggcctg gggaggtgct gggcgcggcc
     3121 gtcggcctga cgctggccaa cggggcggtg gtgttcgccc tttcgaagct ctttcgcctg
     3181 cgcacccgag ccgcggccga ggcggccctg ctgctggcgg gagccggcga gttcgccttc
     3241 gtgatcctgg gccaggccat ggaccagagg ctcgtcgacc gcacgacggg ccaggcgctg
     3301 ctggtcgccg ccaccctgtc gatggtctcc atcccgctcc tggcggcgct tggcgcgcga
     3361 atcggcgggc ggaagatctc gccggccgac ctgccggagg cgcaagggga ggcgccgccc
     3421 gagccccgcg tgctgatcgc cggctatggc cgggtcgggc ggctggtggg tgagatgctg
     3481 cgccgccacg agatcgcctg ggtggccgtc gagcaggacg cccggctggt ggagaccgcg
     3541 cgacgggccg gcgagaccct tttctatggc gacgcggcgc gctcagattt tctggcccgc
     3601 tgcggcctcg ccgaggcccc ggccctggtg gtgaccatgg acgatccgga cggcgccgag
     3661 gcgatcgtcg cggtggctcg cgcgctgcgt cccgacctca tcatcgtcgc ccgcgctcga
     3721 gacgcccgcc acgcccagcg gctctacgac ctgggcgtca ccgacgcggt gcccgaaacc
     3781 gtcgaggcca gcctgcagct ttccgaggcc ctgctggtgg agatcggcgt tccgatgggc
     3841 ctggtgatcg cctcgatcca tgagcggcgc gacgaattcc gaaaagccct gaac
//
LOCUS       DATAJL010000725         2279 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25664,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000725 DATAJL010000000
VERSION     DATAJL010000725.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2279)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2279)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2279
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25664"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1157
                     /locus_tag="VHN39_13820"
     CDS             <1..1157
                     /locus_tag="VHN39_13820"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004739 - pyruvate dehydrogenase
                     (acetyl-transferring) activity [Evidence IEA];
                     GO_process: GO:0006086 - acetyl-CoA biosynthetic process
                     from pyruvate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex E1 component
                     subunit beta"
                     /protein_id="HEX2817471.1"
                     /translation="APAEPPPMTADPQPASRAEASGDPVRQPAPVEAKAATPMPTAPV
                     AAPIKDAELPEGVKLVKVTVRDALRDAMAEEMRRDPDVFLMGEEVAQYQGAYKVSRDL
                     LQEFGDKRVIDTPITEYGFAGLGTGAAMAGLKPIVEFMTFNFAMQAIDHIINSAAKTL
                     YMSGGQIKCSIVFRGPNGAASRVGAQHSQDYAGWYGHVPGLRVLAPYDAADAKGLLKA
                     AIRDPNPVVFLEHEMLYGTEFDVPEGIDWVVPIGKAKVRREGTGVTLVSYSRMVGFCL
                     KAAEELAAEGIDAEVIDLRTIRPMDWQTAVESVKKTNRLVTVEEGWGPMGIGAEVIAK
                     VLEHAFDYLDAPPARVHQEDVPLPYAANLELLSMPSVEKIVKAAKLVSYK"
     gene            1253..1597
                     /locus_tag="VHN39_13825"
     CDS             1253..1597
                     /locus_tag="VHN39_13825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016846 - carbon-sulfur lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2817472.1"
                     /translation="MALPPVVDAQSCNCSMCAKTGFVHVIVPESRFRITKGAERLAEY
                     TFNTRVAKHLFCAECGIKGFYRPRSNPDGWSVNARCLDSTDGFELRIEAFDGQNWEAN
                     ASELAHLSREPA"
     gene            1594..2028
                     /locus_tag="VHN39_13830"
     CDS             1594..2028
                     /locus_tag="VHN39_13830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde-activating protein"
                     /protein_id="HEX2817473.1"
                     /translation="MTELAGHCHCGAIRVELTTTLRVEDLPLRACQCSFCRRHGALTT
                     SDPKGLLHIEAAPGSANRYRFGLGITDFLLCAECGVYVAATMEAEGRLTAVLNVAGVD
                     LPGFQGRTPSPMIYDDETPDERVARRADRWMAAVFVETQPSA"
     gene            2032..>2279
                     /locus_tag="VHN39_13835"
     CDS             2032..>2279
                     /locus_tag="VHN39_13835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX2817474.1"
                     /translation="MPIDILMPALSPTMEEGSLAKWHVKVGDKVRSGDVIAEIETDKA
                     TMEVEAVDEGILAKIMVPEGSEHVAVNTPIALIAGEGE"
BASE COUNT          382 a          790 c          754 g          353 t
ORIGIN      
        1 cggcccctgc tgagcctccg ccgatgacgg ccgacccgca gccggcctcc cgcgccgagg
       61 cctccggcga tcccgtccgg caaccggcgc ccgttgaagc caaggctgcg acgcccatgc
      121 ccacggcgcc ggtcgccgcg ccgatcaagg acgcggagct gccggaaggc gtgaagctgg
      181 tgaaggtcac cgtccgcgac gccctgcgcg acgccatggc cgaggaaatg cgccgcgacc
      241 ccgacgtttt cctgatgggc gaggaagtcg cccagtacca gggcgcctac aaggtctctc
      301 gcgacctcct gcaggagttc ggcgacaagc gggtcatcga caccccgatc accgaatatg
      361 gcttcgcggg cctcggaacc ggcgcggcca tggcgggcct gaagccgatc gtcgagttca
      421 tgaccttcaa cttcgccatg caggccattg atcatattat caattcggcc gccaagacgc
      481 tctatatgtc cggcggccag atcaagtgct cgatcgtctt ccgcggcccc aatggcgcgg
      541 cctcgcgggt cggcgcccag cacagccagg actacgcggg ctggtacggc cacgtcccgg
      601 gcctgagggt gctggcgccc tacgatgccg ccgacgccaa gggtctgctc aaggccgcca
      661 tccgcgaccc gaaccccgtg gtcttcctgg agcacgagat gctctacggg accgagttcg
      721 atgtccccga gggcatcgac tgggtcgtgc cgatcggcaa ggccaaggtc cgccgcgagg
      781 ggaccggtgt caccctggtg tcctactccc gcatggtcgg cttctgcctc aaggccgccg
      841 aggagctggc cgccgagggg atcgacgccg aggtcatcga cctgcgcacc atccgcccga
      901 tggactggca gaccgcggta gagagcgtca agaagaccaa ccgcctggtc accgtcgagg
      961 agggatgggg ccccatgggc atcggcgcgg aggtgatcgc caaggtgctg gaacacgcct
     1021 tcgactatct ggacgccccg ccggcccgcg ttcaccagga ggacgtgccg ctgccctatg
     1081 cggcgaacct cgaactcctc tccatgccgt cggtcgagaa gatcgtgaag gccgccaagc
     1141 tggtgtctta caagtgagcg ggagcgcctc ctcttcgtct tcccgcgaag gcggggaaag
     1201 ccccttcacc tggcatgccg gcggctgtca ctgcggcggg gtccggttcg aggtggcctt
     1261 gccgccggtc gtggacgccc agagctgcaa ctgctccatg tgcgccaaga ccggtttcgt
     1321 ccacgtgatc gtgccggaaa gccggttccg catcaccaag ggcgccgagc ggctggccga
     1381 atacaccttc aacactcggg tggcgaagca cctgttctgc gccgaatgcg gcatcaaggg
     1441 cttctatcgc ccgcgctcca accccgacgg ctggagcgtc aacgctcgct gcctggattc
     1501 cacggacggc ttcgagcttc ggatcgaggc cttcgacggc cagaactggg aagccaacgc
     1561 gtcggagctg gcgcacctct ccagggagcc cgcatgacgg agctcgccgg ccactgccac
     1621 tgcggcgcaa tccgcgtgga gctgacgacg acgctgcgcg tcgaggacct gccgctgagg
     1681 gcttgccagt gcagcttctg ccgccggcat ggggcgctca ccaccagcga ccccaagggc
     1741 ctcttgcaca tcgaggccgc ccccggttcg gccaatcgct accgctttgg gcttggaatc
     1801 accgatttcc tgctctgtgc tgaatgcggg gtctatgtcg ccgcgaccat ggaggccgag
     1861 gggcgtctga ccgccgtcct gaatgtcgcc ggggtcgacc tgccgggttt ccagggccgc
     1921 acgcccagcc cgatgatcta cgatgacgag acgcccgacg agcgcgtggc gcgccgggcc
     1981 gaccgctgga tggccgcggt cttcgtcgaa acccagccga gcgcctgacg catgccgatc
     2041 gacatcctca tgcccgccct gtcgcccacc atggaggagg gctcgctggc caaatggcac
     2101 gtcaaggtcg gcgacaaggt tcgctccggc gacgtgatcg ccgagatcga gaccgacaag
     2161 gcgacgatgg aggtcgaggc cgtcgatgag ggcattctcg ccaagatcat ggtgccggag
     2221 ggcagcgagc acgttgccgt caatacgcct atcgcgctga tcgccggcga gggcgagaa
//
LOCUS       DATAJL010000726         1712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_62889,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000726 DATAJL010000000
VERSION     DATAJL010000726.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_62889"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..176)
                     /locus_tag="VHN39_13840"
     CDS             complement(<1..176)
                     /locus_tag="VHN39_13840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEX2817475.1"
                     /translation="MSETIGRRPWMAAPATAAVMDALEAAGGADCARYVGGCVRNTLI
                     GKPVSDIDIATKLTP"
     gene            complement(173..463)
                     /locus_tag="VHN39_13845"
     CDS             complement(173..463)
                     /locus_tag="VHN39_13845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817476.1"
                     /translation="MLRVFLIRGSLVLLPFAVWFVWRAWARRSGHEMGSTPYAWLAAA
                     GALLVGLSLIGTAVFHTDNRHERYVPGEVTASGAVTKGHFEPAPAAPTGPPR"
     gene            complement(456..1109)
                     /locus_tag="VHN39_13850"
     CDS             complement(456..1109)
                     /locus_tag="VHN39_13850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEX2817477.1"
                     /translation="MSLKGLRGDLRDWIGEHLDPLEAHDPAQGVAVASDFDLGKAYGP
                     TEVDGPLTPASVLIALVERDHGLSVILTRRADTLRRHTGQIALPGGRRDPGETSWQTA
                     LREAHEEIGLEPDFVSVVGLSTPYRTGTGYLITPVVGFVRPGFTLAANPDEVADIFET
                     PFGFLMDPANLEEHERELPSGEKRRFYAYTHEDRFIWGATAGMLRALYDRLYGAAVA"
     gene            complement(1106..1678)
                     /locus_tag="VHN39_13855"
     CDS             complement(1106..1678)
                     /locus_tag="VHN39_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1285 domain-containing protein"
                     /protein_id="HEX2817478.1"
                     /translation="MADEAVRPGLEGVLAAAKQAPGRGLPPVHLWNPAHCGEIDIVIR
                     KDGVWFHEGTPIGREALVRLFSTVLRKDPDGIHLVTPVEKMKITVEDAPFIATRVDRV
                     GEALKFLTNVGDEVEAGPENYIRVEMGKDGEPRPYVHIRRGLEALIARPVFYELVEMA
                     EERQTPDGPTLGVASNGAWYPVGPARAHQL"
BASE COUNT          257 a          635 c          577 g          243 t
ORIGIN      
        1 ggcgtcagct tggtggcgat gtcgatgtcg ctgaccggct tgccgatcag ggtgttgcgc
       61 acgcagccgc cgacgtagcg ggcgcagtcg gccccgccgg ccgcctccag ggcgtccatc
      121 accgccgccg tcgccggggc ggccatccag gggcgccgac cgatcgtctc gctcatctgg
      181 gtgggccggt cggcgcggcg ggcgccggct cgaaatggcc tttggtcacc gcgccgctgg
      241 cggtgacctc gcccggcaca tagcgctcat ggcggttgtc ggtgtggaac accgccgtgc
      301 cgatcagcga caggccgacc agcagcgcgc ccgccgccgc cagccaggca tagggcgtcg
      361 agcccatctc gtggcccgac cgccgcgccc aggcccgcca gacgaaccag accgcgaacg
      421 gcagcagcac caggctgccg cgaatgagga aaaccctaag caacggcggc tccatagagc
      481 cggtcgtaga gggcgcgcag catgccggct gtcgcccccc agatgaaccg gtcctcgtga
      541 gtataggcgt aaaaccgccg cttctcgcct gacggcaact cgcgctcgtg ctcctcgagg
      601 ttggccgggt ccatcaggaa gccgaagggc gtctcgaaga tgtcggccac ctcgtccgga
      661 ttggcggcca gcgtgaagcc gggccgcacg aagcccacca ccggcgtgat cagatagccc
      721 gtgccggtgc ggtagggggt cgagagcccc acaacgctga caaagtccgg ctccagtccg
      781 atctcctcgt gagcttcgcg cagcgcggtc tgccaggagg tctcgccggg atcgcgccgg
      841 ccgcccggca aggcgatctg gccggtgtgg cggcgcaggg tgtcggcccg gcgcgtcagg
      901 atcaccgaca gcccgtggtc gcgctccacc agcgcgatca gcaccgaggc cggggtcagt
      961 ggcccgtcca cctccgtcgg gccataggcc ttgccgagat cgaaatcgga cgcgaccgcg
     1021 accccctgcg ccgggtcgtg cgcctccagc gggtcgagat gctcgccgat ccaatcccgc
     1081 aggtcgccgc gcagcccctt gaggctcaca actgatgcgc ccgcgccggg cccacgggat
     1141 accaggcgcc gttggacgcg acccccagcg tcgggccgtc cggcgtctgg cgttcctcgg
     1201 ccatctccac cagctcgtag aataccggcc gggcgatcag cgcctccagg ccccgccgga
     1261 tgtggacata ggggcgcggc tcgccgtcct tgcccatctc cacgcggatg tagttctcag
     1321 gccctgcctc cacctcgtcg ccgacattgg tcaggaactt cagcgcctcg cccacccggt
     1381 ccacccgcgt ggcgatgaac ggggcgtcct cgacggtgat cttcatcttc tccaccggcg
     1441 tcaccaggtg gatgccgtcg ggatccttgc gcaggaccgt ggagaagagc cgcaccagag
     1501 cctcgcggcc gatcggcgtg ccctcgtgga accagacgcc gtccttgcga atgacgatgt
     1561 cgatctcgcc gcagtgagcc gggttccaca gatgcaccgg cggcaggccg cggcccggcg
     1621 cctgtttcgc cgccgccagc acgccctcca accccggtct caccgcctcg tccgccatac
     1681 cggggaaggt aggcgcgcag gcgagagcca tg
//
LOCUS       DATAJL010000727         1656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25684,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000727 DATAJL010000000
VERSION     DATAJL010000727.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1656
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25684"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VHN39_13860"
     CDS             <1..518
                     /locus_tag="VHN39_13860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEX2817479.1"
                     /translation="DQLDTKHDFPLPPKMVEAEFAAIWQQVEQDKAAGELPPEDLKKS
                     DKKLKEEYRKIAERRVRLGLVLAEIGRANNVQVTEQELGEAMRTEAMKYGPQAQQVFD
                     LFRQNPNAQAQLRAPIFEDKVVDLIVEKAKVKDTKVSKDDLMKDDDLPAGYGDDEAPK
                     PKKKAAAKKAD"
     gene            complement(582..752)
                     /locus_tag="VHN39_13865"
     CDS             complement(582..752)
                     /locus_tag="VHN39_13865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817480.1"
                     /translation="MTTLGDDVIPSQEPLSFSGAAPRRDGDAQAKSLAQEINERRARV
                     ENAELLQHLRGL"
     gene            1135..>1656
                     /locus_tag="VHN39_13870"
     CDS             1135..>1656
                     /locus_tag="VHN39_13870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEX2817481.1"
                     /translation="MDCQFACPAHTPVPEYIRLIADGRYSDAYMVNWQSNVFPGILGR
                     TCDRPCEPACRRGRVEEEPVAICRLKRVAADNKDDITARLPAPAAQTNGKRIAMVGAG
                     PASLTVARDLAPLGYEITIFDGDAKAGGMIRSQIPRFRLPESVIDEEVGYITGLGPVM
                     RLGERIDSLGVLLA"
BASE COUNT          323 a          533 c          544 g          256 t
ORIGIN      
        1 tggaccagct cgacaccaag cacgatttcc cgctgccgcc gaagatggtc gaggccgagt
       61 tcgccgccat ttggcaacag gtcgagcagg acaaggccgc cggcgaactg ccgccggaag
      121 acctcaagaa gtccgacaag aagctcaagg aagagtaccg caagatcgcc gagcgccggg
      181 tgcgcctggg cctggtgctg gccgagatcg gccgggccaa caacgtccag gtcaccgagc
      241 aggaactggg cgaggccatg cggaccgagg ccatgaagta cgggccgcaa gcgcagcagg
      301 tcttcgacct cttccgccag aaccccaacg cccaggcgca actgcgtgcg cccatcttcg
      361 aagacaaggt cgtcgacctg atcgtcgaga aggccaaggt gaaggacacc aaggtctcca
      421 aggacgacct gatgaaggac gacgacctcc cggcgggcta cggcgacgac gaggcgccca
      481 aacctaaaaa gaaagccgcg gccaagaagg ctgactgacg cccgagctcg atgggtcccg
      541 gtctttttcc gggaaaccgg gatgacagcg gtgggcggct cctacagccc gcgcaggtgc
      601 tgcagcaact cggcgttctc gacgcgtgcg cggcgttcgt tgatttcctg ggcgaggctc
      661 ttcgcctggg catccccatc acggcgcggg gcggccccgg agaacgataa gggttcttgc
      721 gaagggatga cgtcgtcgcc aagcgtggtc atcgcaggtt ctccccgccc tcatgcgcga
      781 gggctcccgg cgttaagtta ccattaggca atgtgaacgc ccgccagaaa agctgtggcc
      841 gcgctcacgt tcgcttgagg ggaagcttgg ccttgagggg aaggatttcg ccggatttcc
      901 gcgtgtccgg cttgaaatca ccgatcagcg attaggaatg ggcttggctt gaccgccgaa
      961 cggggcctaa cctgacgaag aacgccgcgt cgtgacggca acaaagccca ctcaagcccg
     1021 cgcctgccgc ctgctgagtt cgcttgccgc cgcgggaaat agagcgtcgc gggattaggg
     1081 atcagggttt tgcaacgtac gagtacgtgg actcccgact actttcataa ggtcgtggat
     1141 tgccagttcg cctgtccagc gcacacgccg gtgccggaat acatccgcct gatcgcggac
     1201 gggcgctact ccgacgccta catggtcaac tggcagtcga acgtgttccc agggattctg
     1261 ggccgcacct gcgaccgccc ctgtgaaccc gcctgccggc gaggacgcgt cgaggaggag
     1321 ccggtcgcta tttgccggct gaagagggtc gcggccgaca acaaggacga catcaccgcc
     1381 cggctgcccg cgcccgccgc ccagaccaac ggcaagcgca tcgccatggt gggggccggc
     1441 ccggcttcgt tgacggtggc ccgcgacctg gcgcccctcg gctacgaaat caccatcttc
     1501 gacggcgacg ccaaggcggg cggcatgatc cgcagccaga ttccgcgctt tcgcctgccc
     1561 gaaagcgtca tcgacgaaga ggtgggctac atcaccgggc tcggcccggt catgcgcctg
     1621 ggcgagcgga tcgatagcct gggggtgctt ctggcc
//
LOCUS       DATAJL010000728         3110 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_121351,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000728 DATAJL010000000
VERSION     DATAJL010000728.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3110)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3110)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3110
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121351"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>3110)
                     /gene="rpoC"
                     /locus_tag="VHN39_13875"
     CDS             complement(<1..>3110)
                     /gene="rpoC"
                     /locus_tag="VHN39_13875"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000345 - cytosolic DNA-directed RNA
                     polymerase complex [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEX2817482.1"
                     /translation="YRRVINRNNRLKRLQELNAPDIIIRNEKRMLQEAVDALFDNGRR
                     GRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPK
                     KMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIREHPVLLNRAPT
                     LHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMS
                     TNNILSPANGRPIIVPSQDIVLGLYYLSLLRDGEPGEGKAFADLNEIDQALDAGVVSL
                     HSKIRARYSEMDAEGNLVRKVIETSPGRMKIAALFPQHPAVGHRLLEKNLTKKEIANL
                     IDIVYRHCGQKATVIFADQIMALGFREAAKAGISFGKDDIVIPQRKAPIVAETRKLVE
                     EYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAEVSTAGKDANGRDLEINSIFM
                     MSNSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVQEYFNSTHGARKG
                     LADTALKTANSGYLTRRLVDVAQDCIITEEDCGTTRGITLRAVVEGGDVLVSLGLRIL
                     GRFAAEDIKDPNTGEVVVPADTYLNENMCDLVEGAGVQSVKIRSVLTCDTKVGVCGAC
                     YGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEQSFFESGNDGV
                     VKIAGGNTVVNSQGHLIGMSRNLALTVLVDGKEREAYKPPYGARLRVKDGEKVKRGQR
                     LAEWDPYTTPIITEVGGKVRFEDLVDNMSVREEADEATGITNRVVIDWRASTKGSDLR
                     PAMAVIGDDGAYMRISNGGEARYLLPAGAVLSIGDGDEVKPGEVMARIPTESAKTRDI
                     TGGLPRVAELFEARRPKDCAVIAEMDGRVEFGRDYKNKRRIKITPEDGGEAVEFLIPK
                     GKHIAVHDGDVIRKGEYLIDGNPDPHDILRILGIEALAEFLVNEIQEVYRLQGVPIND
                     KHIETIVRQMLQKVEILEPGDTGLLKGDHLDKIEVDEESEKTETRGGRPAVTQPVLLG
                     ITKASL"
BASE COUNT          436 a         1002 c         1045 g          627 t
ORIGIN      
        1 gcagggacgc cttggtgatc cccagcagca ccggctgggt gaccgccgga cggccgccgc
       61 gggtctcggt cttttcgctt tcctcgtcga cttcgatctt gtcgaggtgg tcgcccttga
      121 gcaggcccgt gtcgcccggc tcgaggattt ccaccttctg cagcatctgg cggacgatgg
      181 tctcgatgtg cttgtcgttg atcggcacgc cctgcagccg gtagacctcc tggatctcgt
      241 tcaccaggaa ctcggccagg gcctcgatcc cgaggatccg caggatgtca tgcgggtcgg
      301 gattgccgtc gatcaggtac tcgcccttgc ggatcacgtc accgtcgtgg acggcgatgt
      361 gcttgccctt ggggatcagg aactcgaccg cttcgccgcc gtcctcaggc gtgatcttga
      421 tccggcgctt gttcttgtag tcgcgtccga actcgacccg gccgtccatc tcggcgatca
      481 ccgcgcagtc cttcggacgg cgggcttcga agagctcggc cacccgcggc aggccgccgg
      541 tgatgtcccg cgtcttggcg ctttccgtgg ggatccgggc catgacctcg cccggcttca
      601 cttcgtcgcc gtcgccgatc gagagcaccg cgcccgccgg caggaggtaa cgggcctcgc
      661 cgccgttgga gatgcgcatg taggcgccgt cgtcgccgat caccgccatg gccggacgca
      721 ggtccgaccc cttggtggag gcgcgccagt cgatgaccac gcggttggtg atcccggtgg
      781 cttcgtcggc ttcctcgcgg accgacatgt tgtccaccag gtcctcgaac cgcaccttgc
      841 cgccgacttc ggtgatgatc ggggtggtgt aggggtccca ttcggcgagg cgctggccgc
      901 gcttgacctt ctcgccgtcc ttgacgcgca ggcgcgcgcc gtaggggggc ttgtaggctt
      961 cgcgttcctt gccatcgacc aggacggtca aggcgaggtt gcggctcatg ccgatcaggt
     1021 ggccttgcga gttcaccacg gtgttgccgc cggcgatctt gaccacgccg tcgttgccgc
     1081 tttcgaagaa cgactgctcg gccacctggg cggtgccgcc gatgtggaag gtccgcatgg
     1141 tcagctgggt gccgggttcg ccgatggatt gggcggcgat gacgccgacc gcttcaccga
     1201 tgttcaccgg ggtcccgcgc gccaggtcgc ggccgtagca ggcgccgcag acgccgacct
     1261 tggtgtcgca ggtcagcacc gaacggatct tcaccgactg gacgcctgcg ccctcgacga
     1321 gatcgcacat gttctcgttg aggtaggtgt cggccggtac gacgacttcg ccggtgttcg
     1381 ggtccttgat gtcctcggcc gcgaagcgac ccaggattct gaggcccagc gagaccagca
     1441 catcgccgcc ctcgaccacg gcgcgaaggg tgatgccccg cgtggtgccg cagtcttcct
     1501 cggtgatgat gcagtcctgc gccacgtcga ccagacggcg cgtcagatag ccggagttgg
     1561 cggtcttcag ggcggtgtcg gccaggccct tacgggcgcc gtgggtggag ttgaagtact
     1621 cctggacggt caggccttcc ttgaagttcg agatgatcgg cgtctcgatg atctcgccgg
     1681 agggcttggc cataaggccg cgcatcccgc cgagctgctt catctgggcc tgcgaaccgc
     1741 gggcgccgga gttgctcatc atgaagatcg agttgatctc gaggtcgcgg ccgttggcgt
     1801 ccttaccggc ggtcgagacc tcggccatca tctcgtcggc gacgcggtct gtggccttgg
     1861 cccaggcatc gacgaccttg ttgtacttct cgcccttggt gatcaggccg tccgcatatt
     1921 gctgctcgta ttcttccacg agcttgcggg tttcggcgac gatcggcgcc ttgcgttgcg
     1981 ggatgacgat gtcgtccttg ccgaacgaga tgccggcctt ggccgcctcg cggaagccca
     2041 gagccatgat ctggtcggcg aagatgacgg tcgccttctg gccgcagtgc cggtagacga
     2101 tgtcgatcag gttggcgatt tccttcttcg tgaggttctt ctcaagaagc cggtggccga
     2161 ccgccgggtg ttgcgggaag agcgccgcga tcttcatccg gccgggcgag gtctcgatga
     2221 ccttgcggac cagattgccc tcggcatcca tctcgctgta tcgcgcccgg atcttggagt
     2281 gcagcgacac cacgccggcg tcgagcgcct ggtcgatctc gttgagatcg gcgaacgcct
     2341 tgccttcgcc cggctccccg tcgcgcagca gcgacaggta gtagaggccc agaacgatat
     2401 cctgcgacgg cacgatgatc ggccggccgt tggcgggcga caggatattg ttcgtgctca
     2461 tcatcagcac gcgggcttcc agctgggctt ccagcgagag cggcacgtgt acggccatct
     2521 ggtcgccgtc gaagtcggcg ttgaaggccg cgcagaccag cgggtgcagt tggatcgcct
     2581 tgccttcgat cagcttgggc tcgaaggcct ggatgcccag acggtgcagg gtgggcgcgc
     2641 ggttcagcag caccgggtgc tcgcggatca cctcgtcgag gatatcccac accgccggct
     2701 gctcacgctc caccatgcgc ttggactgct tcacggtccc cgagagtccc ttggcgtcga
     2761 gacgcgcgta gatgaacggc ttgaagagct cgagcgccat cttcttcggc aggccgcact
     2821 catgcagctt cagttccggg ccaaccacga tgaccgagcg gcccgagtag tcgacgcgct
     2881 tgccgagcag gttctggcgg aagcggcctt gcttgccctt cagcatgtcg gccagcgact
     2941 tcagcgggcg cttgttggcg ccggtgatga cccggccgcg gcggccgttg tcgaacagag
     3001 cgtcgacggc ttcctgcagc atccgcttct cgttgcggat gatgatgtcc ggcgcgttca
     3061 attcctgaag ccgcttgagg cggttgttcc ggttgatcac gcggcggtag
//
LOCUS       DATAJL010000729         5898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_25735,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000729 DATAJL010000000
VERSION     DATAJL010000729.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5898
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25735"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VHN39_13880"
     CDS             <1..210
                     /locus_tag="VHN39_13880"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2817483.1"
                     /translation="CLVVDEKLPGISGIEALEALRGRQVTIPAIVITSVADARLRARL
                     LLADAQLIEKPLLNDQLTRAIRALL"
     gene            complement(247..726)
                     /locus_tag="VHN39_13885"
     CDS             complement(247..726)
                     /locus_tag="VHN39_13885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817484.1"
                     /translation="MPQSQSSPTARTRTPTWVEETASRAARSFAAGVAYFLAIAAAGW
                     LFGPLRAIVIRHGAPAYWTTLFEAFALALLLAAAAAAAIRTFRVRERAGDRLLVGSVG
                     VTLLVAAEFIDGALVRGWGVYETLSDLTPQSGGVFIVVLLVLLVLPLIEPAGRAEPR"
     gene            951..1580
                     /locus_tag="VHN39_13890"
     CDS             951..1580
                     /locus_tag="VHN39_13890"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX2817485.1"
                     /translation="MKHAIIIAHPNPRSLTHAVAKTYRKSVEALGQQAIVRDLYAMGF
                     DPCLKASEIPKPSGFQFGADVVAERKALADVDVFAFVYPFWFNAPPAILKGYADRVFS
                     MGFGYEPGMGGTESLLDGKKLISFTTSGAPDQWVKETGALQTLMALFDRHLGAMCGLQ
                     VVDHVHAGGIVSDLTAEAAEDVMHGVRRAVSAHFGELARRDATSLRTAT"
     gene            1651..2292
                     /locus_tag="VHN39_13895"
     CDS             1651..2292
                     /locus_tag="VHN39_13895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2817486.1"
                     /translation="MTLAYSPDTAAAPAIVELMDRMGLRMTFAKGEEIFGQDEDADMI
                     HSLVSGVVRTTRLLSDGRRQVGDFYYPGDIIGLEVGESYRFSAEALSDCVIRVVKRSA
                     LGALSGQDNLDRALWEATRRELERTQEHLLMLGRKSACEKVASFLMDIAQRGGSEDVS
                     LPMGRQDMADYLGLTIETVSRMVTQLQGSRIVEFATSRQFRVTRWPALERLAA"
     gene            2319..3194
                     /locus_tag="VHN39_13900"
     CDS             2319..3194
                     /locus_tag="VHN39_13900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX2817487.1"
                     /translation="MTMLQDAPVQVQQTAAKSASALRSILVHVEGSPEAAGRLNVAAD
                     LARMFDAKLMGVGVEMIQTLSDPYGMLGGEWVVQLQTMVEDDLKRAEAAFRAKTAGLK
                     TDWTSLETFPAPAMARHARSADLIVAGGAPIGREGSFRAADPAELVMLSGRPVLIAPP
                     KPGKFHGRAIVVAWKDTRESRRALADSLPFLLAAEEVAVVECCDKDAVSDARVNTADV
                     VRHLRRHGVEAFGKAVATSPERVSTELNIAAQDIGADLIVAGGYGHTRLGEWAFGGVT
                     YDLLNAPERFVLLSH"
     gene            3311..3976
                     /locus_tag="VHN39_13905"
     CDS             3311..3976
                     /locus_tag="VHN39_13905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT family protein"
                     /protein_id="HEX2817488.1"
                     /translation="MARVGWLRAAVLGANDGIVSTASLIVGVAAGPATNGQVLLAGLA
                     GLVAGAMSMASGEYVSVSSQSDSEKADLAREAAELKANPAAEAHELAGFYVNRGVEPA
                     LANQVAAQMMAKDALGAHARDELGISEITTARPIQAAFASAMSFTLGAVLPLTVVLLA
                     PASWVLFATPAVALASLALLGAIGARAGGAGGVRAVFRVTFWGAIAMAVTAGIGHLFG
                     AVV"
     gene            4107..4721
                     /locus_tag="VHN39_13910"
     CDS             4107..4721
                     /locus_tag="VHN39_13910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817489.1"
                     /translation="MTQRMKSLADQIVGLQSELDREIERRRKVLGWELSHRIGEFELG
                     VAADHRRLRLGLAKFFGRTSPAVVLTAPVIYSLIIPLAIADAWVSAYQAICFRAYGIP
                     RVQRRDYIALDRGRLAYLNVIEALNCTFCAYANGLVAYVREVSSRTEQYWCPIKHAVK
                     ISDPHRRYYEFLEYGDAEGYRARLDEFRARLRTEPAPAGADLAA"
     gene            complement(4756..5292)
                     /locus_tag="VHN39_13915"
     CDS             complement(4756..5292)
                     /locus_tag="VHN39_13915"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX2817490.1"
                     /translation="MTEPAFLTAHFTPAGDTIHADFHLTLDNHVEEVWAALTEPQWLA
                     RWLAPGEIELSEGGSARLDFGESGAVIESRVTAFAPQRLLEYSWSRPGEPLRPLRWSL
                     EPIGPTTLLTLRLSMPAKEDAARAAAGFAAHLEMLQTALIGVPTKFPFAVFKEARDAY
                     REQVAQLSAERRTVQVSS"
     gene            complement(5303..5719)
                     /locus_tag="VHN39_13920"
     CDS             complement(5303..5719)
                     /locus_tag="VHN39_13920"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2817491.1"
                     /translation="MWRILGAIAALSAGAQTAPSPAASPDPASRGLYVALRVCSACHK
                     VAFPGVGPDSAAPSFAAIHARHDAEGLHSLLVEISSAGHQEMPPIPMSPAEIEDVAAY
                     IATVPPAPPAVAPHRDRRRGPASVRRIAIFPFHAAL"
BASE COUNT          932 a         1993 c         2065 g          908 t
ORIGIN      
        1 tgtctggtgg tggatgaaaa gctgccgggg atcagcggca tcgaggcgct cgaggcgttg
       61 cgcggacgcc aggtgacgat tccggcgatc gtcatcacca gcgtggcgga cgccaggttg
      121 cgcgcgcgtc tgctgctggc cgacgcgcag ctgatcgaaa agccgctgct gaacgatcag
      181 ctgacccgcg ccattcgcgc cctgctttag ctggccagcc catatgggcc ggccgtccag
      241 aggacgtcaa cggggctcag cgcggcccgc cggctcgatc agcggcaaga ctaacaggac
      301 gagcagcacc acgatgaaga cgccgccgga ctggggcgtc aggtcggaca gggtttcata
      361 gacgccccag ccgcgcacca gcgccccatc gatgaattcc gccgcgacca gcagggtcac
      421 gccgacgctg cccaccaaca ggcggtctcc ggcccgttcg cgcactcgga aggtgcgaat
      481 cgcggcggcg gcggcggcgg ccagcagcaa cgcaagcgcg aaggcttcga agagggtggt
      541 ccagtaggcg ggcgctccat gacggatgac gatcgcccgc aaaggcccga acagccagcc
      601 ggccgcggcg atcgccagga aataggcgac gccggccgcg aaggaccggg cggcgcgcga
      661 tgcggtttcc tccacccagg tcggggtgcg agttcgggcc gtggggctgg attgggactg
      721 cggcactatc gctcctccac tgtcattgcc agggccggtc tcgccggcgc cgatggcggc
      781 cgggtcaccc ctgccgcggc gtggggcggc gccatcggtg ggcgcgttgg ggtggattgg
      841 agcagcggcg tccatggggc caacctggac cgggaattca gggtgctccg tgatctcgat
      901 caaagcggcg gcccggcgga cgtcgtctct taggggccag gaggcccgtc atgaaacacg
      961 cgatcatcat cgcccacccg aacccccgga gcctgaccca cgcggtcgcg aagacctatc
     1021 gcaagagtgt cgaggcgctc ggccaacagg ctatcgtgcg cgacctctac gccatggggt
     1081 tcgacccctg cctcaaggcc agcgagattc ccaagccctc cggcttccag ttcggcgcgg
     1141 acgttgtcgc cgagcgcaag gccctggcgg acgtggatgt cttcgccttc gtctatccct
     1201 tctggttcaa cgcgccgccg gcgatcctga agggctatgc cgaccgcgtc ttcagcatgg
     1261 gattcggcta cgagcccggg atgggcggca cggagagcct gctcgacggc aagaagctga
     1321 tcagcttcac cacctcgggc gcgccggacc agtgggtcaa ggagacaggc gcgctgcaga
     1381 ccctgatggc cctgttcgat cgccatctgg gggccatgtg cgggctgcag gtcgtggatc
     1441 acgtccacgc cggcggcatc gtctccgatc tcaccgcgga ggccgcggag gatgtgatgc
     1501 atggcgtgcg ccgcgccgtc agcgcccatt tcggcgaact cgcccgacgc gacgcgacgt
     1561 ccctccgtac cgctacttag ggagcgcaca cgaatttccg cgcgccggtc gaaaggcgag
     1621 tctgcgggtc atcggatcca ggagtttccc atgaccctcg cctactcacc ggacaccgcc
     1681 gccgcccccg ccatcgtcga actgatggat cggatgggcc tgaggatgac cttcgccaag
     1741 ggcgaggaga tcttcggcca ggacgaggac gccgacatga tccacagcct ggtttccggc
     1801 gtggtccgga ccacccggct cctgagcgat ggacgtcgcc aggtcggcga cttctattat
     1861 ccgggcgaca tcatcggtct tgaggtcggt gagtcctatc ggttctccgc cgaagccctg
     1921 agcgactgcg tcatccgcgt cgtcaagcgc tcggcgctcg gcgctctcag cggtcaggac
     1981 aatctggacc gcgcgctctg ggaagccacc cgccgcgaac tggaacgcac tcaggagcat
     2041 ctgctgatgc tggggcgcaa gagcgcctgc gagaaggtcg ccagcttcct gatggacatc
     2101 gctcagcgcg gcggatccga ggacgtgtcg ctcccgatgg gccgccagga catggccgac
     2161 tatctcggac tgacgatcga gaccgtctcg cggatggtca cccagctgca gggttcccgg
     2221 atcgtagagt tcgcgacctc gcggcaattc cgcgtcaccc gctggccggc gctcgagcgc
     2281 ctcgccgcct agattcaagt tctgaagagg agtcgaccat gaccatgctc caagacgccc
     2341 cggttcaggt tcaacagacg gccgcgaaga gcgccagcgc gctgcgcagc atcctggtcc
     2401 acgtcgaggg aagtcccgaa gccgcggggc gattgaacgt cgcggccgac ttggcgcgga
     2461 tgttcgacgc caagctgatg ggcgttggcg tggagatgat ccagacgctc agcgatccct
     2521 acggaatgct gggcggcgaa tgggtggtgc aactgcagac catggtcgag gacgacctga
     2581 agcgcgccga ggcggctttc cgggccaaga ccgccgggct caagaccgac tggacctccc
     2641 tcgaaacctt ccctgccccg gccatggccc gccatgcgcg ctcggccgac ctgatcgtcg
     2701 ccggcggcgc gccgattggc cgtgagggct cttttcgggc ggcggatccg gccgagctgg
     2761 tcatgctgag cggtcgcccc gtgctcatcg ccccgcccaa acccggcaag ttccatggcc
     2821 gggccattgt ggtcgcctgg aaggacaccc gggaatcccg gcgcgcgctc gccgacagcc
     2881 tgccgttcct gctggcggct gaggaggtcg cggtcgtcga gtgctgcgac aaggacgcgg
     2941 tctcggacgc gcgcgtcaat accgccgacg ttgtccggca cctgcgccgg cacggcgtgg
     3001 aggccttcgg caaggcggtc gccacctcgc ccgaaagggt gtcgacagag ctcaatatcg
     3061 ccgcccagga catcggcgcg gacctgatcg tcgccggcgg ctacggccac acgcgactgg
     3121 gtgaatgggc cttcggcgga gtaacctatg acctgctgaa cgcgccggaa cgtttcgtgc
     3181 tgcttagcca ctgagcgcga cccccgcgcc ccggtgctgc ggaggggcgc cggcccgggc
     3241 ccggcccggc ccggcccgtt gacggaggaa ggtcatgccg ctccgaccag gtcatcgcga
     3301 agctcatctg atggcgcgcg tcggctggct tcgcgccgcc gtgctcggcg ccaacgacgg
     3361 catcgtctcc acagcgagcc tgattgtcgg ggtcgcggcc gggccggcca ccaatggcca
     3421 ggtcctgctc gccggcctcg cgggcctggt cgccggcgcg atgtcgatgg cctcgggaga
     3481 atacgtctcc gtcagctccc agtcggactc ggaaaaggcc gacctcgccc gcgaggcggc
     3541 tgagttgaag gccaatcccg ccgccgaggc gcatgaactg gcgggcttct acgtgaaccg
     3601 gggcgtggag cccgcgctgg ccaatcaggt cgcggcgcag atgatggcga aggatgcgct
     3661 cggcgcccac gcccgcgatg agctgggcat ctcggagatc accaccgcgc gtccgatcca
     3721 ggcggcgttc gcgtcggcca tgagcttcac cctgggcgcc gtccttccgc tcacagtggt
     3781 gctgctcgcg cccgcgagct gggtgctgtt cgcgacgcca gccgtcgccc tagcgagcct
     3841 ggccctgctg ggagccatcg gcgcgcgggc aggcggcgcg ggcggcgtca gagccgtatt
     3901 ccgcgtcacc ttctgggggg cgatcgcgat ggccgtgacg gccgggatag gccacctgtt
     3961 cggggctgtg gtctagacgc ggcccagacg gagcggggcc ttgcgaagga tcaaggacgg
     4021 accctcgcgg ccaagctatc tgggcagact ctcccgtgcg ccgcgcgggc catgcgccga
     4081 tccaaacgag aaagccgaag gccccgatga cccagcgcat gaagtctctg gccgatcaga
     4141 tcgttggcct ccagagcgaa ctcgaccggg agattgaacg ccgccgcaag gtgctcggat
     4201 gggagctctc gcaccggatc ggcgagttcg aactgggcgt ggccgccgac catcgccggc
     4261 tgcgtctggg cctggccaag tttttcggcc ggacttcccc tgccgtcgtc ctgacggccc
     4321 cggtgatcta ttcgctgatc atcccacttg cgatcgccga cgcctgggtc agcgcctacc
     4381 aggcgatctg ctttcgcgcc tacggcatcc cgcgcgtcca gcggcgcgac tacatcgccc
     4441 tcgaccgcgg gcggctggcc tatctcaacg tcatcgaggc gctcaactgc accttctgcg
     4501 cctatgccaa cggtttggtc gcctatgtgc gggaggtctc cagccggacc gagcaatact
     4561 ggtgcccgat caagcacgcc gtgaagatct ccgaccccca ccggcgctac tacgagttcc
     4621 tggagtatgg cgacgcggag ggttaccgcg cgcgcctgga cgagttccgc gcgcgcctgc
     4681 ggaccgagcc ggcgcccgca ggcgccgacc tggcggccta gccttcggcc aagccaggcg
     4741 atccttgacg ctgattcagc tggagacctg gactgtccgg cgttcggctg aaagctgcgc
     4801 gacctgctcg cgataggcgt cgcgggcctc tttgaagacc gcgaacggaa atttggtcgg
     4861 gacgccgatg agagcggtct gcagcatctc caggtgcgcg gcaaagccgg cggcggcgcg
     4921 cgcggcgtcc tccttggcgg gcatgctaag gcgcaatgtc aggagggtcg ttgggccgat
     4981 cggctccagc gaccagcgca ggggacgcag gggctctccg ggcctgctcc aggaatattc
     5041 cagcaggcgc tgcggcgcga aggcggtgac gcggctttcg atcaccgcgc cgctctcgcc
     5101 gaagtccaga cgggcggagc cgccttcgct cagctcgatc tcgccgggcg ccagccagcg
     5161 ggccagccac tggggctctg tgagcgctgc ccacacctcc tccacgtggt tgtccagcgt
     5221 gaggtggaag tcggcgtgga tggtgtcgcc ggccggggtg aagtgggcgg tgagaaaagc
     5281 gggttcagtc atgacgtgca cctcatagag cggcgtggaa cgggaaaatg gcaatgcggc
     5341 gaacgctggc tggtcctcgg cgccgatccc ggtgcggggc gaccgcgggc ggcgccggcg
     5401 ggaccgtcgc gatgtaggcg gccacgtcct cgatttccgc aggcgacatc gggatcggcg
     5461 gcatctcctg gtgacctgcg ctcgatatct cgaccaggag gctgtggaga ccctcggcgt
     5521 catgacgcgc gtggatcgcg gcgaacgaag gcgcggcgct gtcgggcccg acgcctggga
     5581 aggccacctt gtggcaggcg gaacagacgc ggagggcgac gtataggccg cggctggccg
     5641 gatcgggcga ggccgccggc gatggcgccg tctgcgcacc ggcgctcagc gccgcaatcg
     5701 ctcccagaat ccgccacatg acgcacacct cgttgcgcga ctaagtctgc ggatactcgc
     5761 cgggcgcgcc ttgagcgaaa tcaaaacgcc ccggaccagg gtccggggcg cttcgcccgt
     5821 ccgctcctgg ggggactacg cggacgggtt cgaccgggcc ctaagcagcg ccgctggacg
     5881 gtcggcgtgg gccaggat
//
LOCUS       DATAJL010000730         1738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_121374,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000730 DATAJL010000000
VERSION     DATAJL010000730.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121374"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..785
                     /locus_tag="VHN39_13925"
     CDS             <1..785
                     /locus_tag="VHN39_13925"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025034.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="pepsin/retropepsin-like aspartic protease family
                     protein"
                     /protein_id="HEX2817492.1"
                     /translation="IVEARVNGRGPLLFILDTGGHDILTPAAAAMLGLPLSGSGFSLG
                     AGEGSAPTRFTRVAKVALGAAEMTDQPFVVLELDLGQALGPDNRPTAISGIIGLELFE
                     RFTVTLDYAAQRLSLRLPGPEPIAGGAPIRFTSDMPSAEASLDGRGGWFGLDTGNNAG
                     VILFKTWVEAKGLPAWFEVAVDAPGVGIGGPVIFRRGRAGGLTLAGASLPGMPVLLAG
                     DHLGALSSRAEAGNIGESVLSHFAVTFDYAHERVRLDPAPGP"
     gene            complement(824..1387)
                     /locus_tag="VHN39_13930"
     CDS             complement(824..1387)
                     /locus_tag="VHN39_13930"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2817493.1"
                     /translation="MPYPPHHRQSVRASIVRSAAALFNRHGYGAVSIDQVMAEVGLTR
                     GGFYLHFRSKSDLCLEAMRHSLQSHPGSQGARAAPDPSHEGPRRMIDAYLGDSAAREP
                     ERACLLVTHAADAANGPEDVRRAYREMIEAAALALPAGDDEDRRYALAALCVGALTLS
                     RGAGDPELAGRIRMAARRAAHGLIATA"
     gene            1446..>1738
                     /locus_tag="VHN39_13935"
     CDS             1446..>1738
                     /locus_tag="VHN39_13935"
                     /inference="COORDINATES: protein motif:HMM:NF013304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HEX2817494.1"
                     /translation="MTPPPSFPVVTSLYAAAFGALHVALAVRVVAFRERSGVMHGDGG
                     VDRLNRAIRAHGNFAENAPFILLLSLLLEMDGARPLTLNLLLAPLAIGRLMHHA"
BASE COUNT          235 a          602 c          622 g          279 t
ORIGIN      
        1 ccatcgtcga ggcccgcgtc aacggccgcg ggccgctgct gttcatcctc gataccggcg
       61 gtcacgacat cctgaccccg gcggcggcgg ccatgctggg cctgccgctt agcggctcgg
      121 gcttcagcct cggcgccggc gagggctcgg cgcccacccg gttcaccagg gtggccaagg
      181 tggcgctggg cgcggccgag atgaccgacc agccgttcgt tgtgcttgag ctcgacctcg
      241 gccaggcgtt gggccccgac aaccggccga ccgcgatctc cggcatcatc gggctggagc
      301 tgttcgaacg gttcaccgtc accctggact acgccgccca acgtctgtcg cttcgcctgc
      361 cggggcccga gcccatcgcc ggcggcgcgc cgatccgctt caccagcgac atgccctccg
      421 cagaggccag cctcgatggc cgcggcggat ggttcggcct cgacaccggc aacaacgccg
      481 gcgtcatcct cttcaagacc tgggtcgagg ccaagggctt gcccgcctgg ttcgaggtgg
      541 cggtcgacgc cccgggcgtc gggataggcg gccctgtaat cttccgaagg gggcgcgccg
      601 gaggcctgac cctggccggg gcgagcctgc cggggatgcc ggtgctgctg gccggcgatc
      661 acctgggcgc gctgtcgtca cgggccgagg ccggcaacat cggcgagagc gtgctgtcgc
      721 actttgctgt caccttcgac tacgcccacg aacgggtgcg gctggatccg gcgccgggcc
      781 cctaggcgcg gcgcgattgg gcctgcgctc gcaatccgat ggctcaggcg gtggcgatca
      841 ggccgtgggc ggcgcggcgg gcggccatgc ggatgcgtcc ggcgagctcc ggatcgcccg
      901 cgccccggga cagggtcagc gcgccgacgc aaagggccgc cagagcgtag cgccggtctt
      961 catcgtcgcc ggccgggagc gccagggccg cggcctcgat catctcgcgg taggcgcgcc
     1021 ggacgtcctc cggcccgttt gccgcatccg ccgcatgcgt caccaaaagg caggcgcgtt
     1081 caggctcccg ggcggcgctg tcgcccaaat aggcgtcgat catcctgcgc ggcccctcat
     1141 gacttgggtc gggggccgca cgtgcgcctt gagatccggg gtgggactgc agggagtggc
     1201 gcatggcctc gagacacagg tcgctcttgg accggaagtg caggtagaag ccgccccgcg
     1261 tcaggccgac ctcggccatg acttggtcta tggagacggc gccatagccg tgccggttga
     1321 agagcgccgc ggcgcttcgc acgatcgagg cgcggacgct ttgacgatgg tgcggcggat
     1381 agggcatggc gcggtctcca aaacatgtcc ttgaacatat tatagccggt cgcatcgtcg
     1441 atggcatgac accaccgcca agtttccccg ttgtcaccag cctctatgcc gcggcctttg
     1501 gcgcccttca tgtggcgctg gcggtgcgtg tcgtggcctt cagggagcgg agcggtgtga
     1561 tgcacggcga cggcggggtg gaccgcttga accgggccat ccgcgcgcac ggcaacttcg
     1621 ccgagaacgc gcccttcatc ctgctgttgt cgctgctgct ggagatggac ggcgccaggc
     1681 cgctgaccct gaacctgttg ctggcgccgc tggcgatcgg tcgactcatg catcatgc
//
LOCUS       DATAJL010000731         6144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95718,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000731 DATAJL010000000
VERSION     DATAJL010000731.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6144
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95718"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..515)
                     /locus_tag="VHN39_13940"
     CDS             complement(<1..515)
                     /locus_tag="VHN39_13940"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921228.1"
                     /note="catalyzes the formation of L-threonine from
                     O-phospho-L-homoserine; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX2817495.1"
                     /translation="MRYVSTRGQAPHVGFVDAVLGGLAPDGGLYVPEDWPKISPAEIA
                     AFAGKPYAEVAARVIGAFAGDEISAADLRTMCQEAYSSFTHSAVVPLAQLGPDVFLAE
                     LFHGPSLAFKDVAMQILARLYEHLLGREGRVQTILCATSGDTGGAAVEALGGLKSVRL
                     VVLFPEGKISEV"
     gene            complement(515..1273)
                     /locus_tag="VHN39_13945"
     CDS             complement(515..1273)
                     /locus_tag="VHN39_13945"
                     /inference="COORDINATES: protein motif:HMM:NF014193.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SURF1 family cytochrome oxidase biogenesis
                     protein"
                     /protein_id="HEX2817496.1"
                     /translation="MSEEWEPKLEPRAAKPAATGFPVGLTAAAVIAFAILMALGVWQL
                     QRLKWKEALLLHVAQREAAAPQSLEYTLDLLARGRDVEFTRVSVVCPGLADAPYLEVY
                     DLRDATVGVRLVSACAVDTDGYRTILVDRGFIPDTTPARPPVDAKDMAPIEVVGVLRK
                     PERGNFATPRSRPGHWYLHEVAGMAAALHAPAPAPIFLFAETRLNPTLLALTPAPLPV
                     QIPNRHLEYALTWFGLAGALAGVYGAAVFKRMRG"
     gene            complement(1282..1638)
                     /locus_tag="VHN39_13950"
     CDS             complement(1282..1638)
                     /locus_tag="VHN39_13950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF983 domain-containing protein"
                     /protein_id="HEX2817497.1"
                     /translation="MSKPNPLLSGAAGRCPNCGEGHLFEGFLKVSPACEACGFDLAAA
                     DSGDGPAVFVIMIAGFIVAFGALFTMVAFRAPAWLTLVIWLPMTLVIVLVLLRPMKGL
                     MLAAQFMNKASQARHD"
     gene            complement(1639..2514)
                     /locus_tag="VHN39_13955"
     CDS             complement(1639..2514)
                     /locus_tag="VHN39_13955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit 3"
                     /protein_id="HEX2817498.1"
                     /translation="MAEGVKHDYHLVNPSPWPLVGAIAATVMALGGVTWMKGLFGLPA
                     HTAWLFFAGLAGVLFTMIVWWRDVVIEANQGDHTPVVSIGLRYGMILFIASEVMFFVA
                     WFWIFFEMALFHHVRAVSSIEEVRTAWAHWPPQGIETVPAFQLPLVNTLTLLLSGTTV
                     TWAHHALQTGDRRGAKIGLFLTICLGVLFTSIQAYEYNHILEHKYFFGGEGAANSGLY
                     GSSFFMATGFHGFHVLIGTIFLTVCLIRLIGGGFSPQKHFGFEAAAWYWHFVDVVWLF
                     LFAFIYVIFGAHGGG"
     gene            complement(2665..3270)
                     /locus_tag="VHN39_13960"
     CDS             complement(2665..3270)
                     /locus_tag="VHN39_13960"
                     /inference="COORDINATES: protein motif:HMM:NF003465.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HEX2817499.1"
                     /translation="MSPSNPSKPPPSKPSGPGPFGRNGGVALICGAVIAGMVGAAYAS
                     VPLYRAFCQVTGYGGTVRKAETAPDRVLDQTLQIHFDTNVRGLPWDFSAEQAAQTVKI
                     GETAVATFKVTNHADKPVTARAVFNVVPEQAAVYFRKLSCFCFSDQTVAAGATVEMPV
                     LYFVDPKYAQDFETKNGKSITLSYTFYPAQDVKPPAAKAAD"
     gene            complement(3248..3400)
                     /locus_tag="VHN39_13965"
     CDS             complement(3248..3400)
                     /locus_tag="VHN39_13965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817500.1"
                     /translation="MSDPARESNVEAKARRGRNIALALGLVLFVVLVFVVTIVRLGAS
                     VTQQPF"
     gene            complement(3401..4372)
                     /gene="cyoE"
                     /locus_tag="VHN39_13970"
     CDS             complement(3401..4372)
                     /gene="cyoE"
                     /locus_tag="VHN39_13970"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006783 - heme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEX2817501.1"
                     /translation="MAMTEAASITAKAPARWQDFVQLLKPRVMSLVVFTGLTGLVCAG
                     RWVNPILAGVAILCIAVGAGASASLNMWYDADIDAKMRRTRSRPVPAGRVQGADALAL
                     GVVLSMFSVMLMGMALNWLAAGLLAFTIFFYAVVYTVWLKRWTAQNIVIGGLAGALPP
                     VIGWAAASGSVPLNAWLLCAIIFMWTPPHFWALSLYTSEDYKKAGVPMMPVVAGPAST
                     RKQILIYSFLFTPLCLVPVLTGLGGPYYLAVAAVGGLVFLLLAIRLFRSHAGEVGKQR
                     NDDGLYDVRAGAKDARNLFAFSILYLTLLFATLLAEHLMRIKPLELS"
     gene            complement(4454..6115)
                     /gene="ctaD"
                     /locus_tag="VHN39_13975"
     CDS             complement(4454..6115)
                     /gene="ctaD"
                     /locus_tag="VHN39_13975"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase subunit I"
                     /protein_id="HEX2817502.1"
                     /translation="MAYGAKSHDDSHDSHDHKPGFIVRWLFSTNHKDIGTLYILFAIM
                     AGLVGGALSGLIRWELYEPGIQIFQPNSWIAQIGLIEGSKHGYNVVVTAHALIMIFFM
                     VMPAMIGGVGNWFVPIMIGAPDMAFPRMNNISFWLLVASWIMMCTSMFVDGGPGRGFG
                     GGWTMYAPLSTSGHTGPAMDCAILAIHLAGASSILGAINFITTIFNMRAPGMTLHRMP
                     LFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFHTHFFDAAGGGDPVMYQHLFWFFGH
                     PEVYILILPGFGMISHIVSTFSRKPVFGYLAMAYAMVAIGFIGFLVWAHHMFTTGMNV
                     NLTAYFVAATMVIAVPTGIKVFSWIATMWGGSIDFKTPMLWAIGFIFLFTLGGVTGVV
                     LANAGVDYQFQDTYYVVAHFHYVLSLGAVFAIFAGFYYWFEKMWGVKYREWLGALHFW
                     ITFVGVNVIFFPQHFLGLQGMPRRYVDYPEGFAFWNKVSSIGYVITLVGVGVFIIVLI
                     DAMVSRRKAEANPWGEGATTLEWTLPSPPPFHQFNELPVVEADSH"
BASE COUNT         1158 a         1951 c         2158 g          877 t
ORIGIN      
        1 acctcgctga tcttgccctc gggaaagagc accaccagcc gcaccgactt caggccgccc
       61 agggcctcga ccgccgcgcc gccggtgtcg ccggaggtgg cgcagaggat ggtctgcacc
      121 cggccctcgc ggcccagcag atgttcgtag agccgggcca gaatctgcat cgcgacgtct
      181 ttgaacgcca ggctcggccc gtggaacagc tccgccagga agacgtccgg gccgagctgg
      241 gcgagcggca cgacggctga gtgggtgaag ctggaatagg cctcctggca catggtccgg
      301 aggtcggcgg cggagatctc gtcgccggcg aaggcgccga tgacgcgggc ggcgacctcg
      361 gcgtagggct tgccggcgaa ggccgcgatc tcggcgggcg aaatcttcgg ccagtcttcc
      421 ggcacataga ggccgccgtc aggcgcgagg ccccccagca cggcgtcgac gaagcccacg
      481 tgaggcgcct gcccgcgggt ggagacgtag cgcatcagcc tctcattctc ttgaagaccg
      541 ccgcgccata gacgcccgcc agggccccag caaggccgaa ccaggtcagc gcgtactcca
      601 gatggcggtt ggggatctgc accggcaggg gcgcaggcgt cagcgccagc agcgtcggat
      661 tgagcctggt ctcggcgaac aggaagatcg gcgcgggcgc cggggcgtgc aacgcggccg
      721 ccatgccggc gacctcgtgc aggtaccagt gacccggccg gctccggggc gtcgcgaagt
      781 tgccgcgctc gggcttgcgc aggacgccca ccacttcgat gggcgccatg tccttggcgt
      841 cgaccggcgg acgggcgggg gtggtgtcgg ggatgaagcc gcgatcgacc aggatggtcc
      901 ggtagccgtc ggtgtcgacg gcgcaggccg agaccaggcg cacgcccacc gtggcgtctc
      961 gcaggtcata gacctccagg tagggcgcgt ccgccaggcc cggacagacc accgagaccc
     1021 gggtgaactc gacgtcgcgg ccgcgggcca gcaggtcgag ggtgtattcc agcgactgcg
     1081 gagccgccgc ctcccgctga gccacgtgga gcagcagggc ctctttccac ttcagccgct
     1141 gcagttgcca gacgcccaag gccatgagga tggcgaaggc gatgaccgcc gccgcggtca
     1201 ggccgacggg gaagccggtc gccgcgggct tcgcggccct gggctccagc ttcggctccc
     1261 actcttcaga caaggggggc ttcagtcatg gcgcgcttgg ctggccttgt tcatgaactg
     1321 cgcagccagc atcagcccct tcatcggccg cagcagcacc agcacgatga ccagcgtcat
     1381 gggcagccag atcaccagcg tcagccaggc cggggcgcgg aaggcgacca tggtgaagag
     1441 cgcgccaaag gccacgatga agcccgcgat catgatcacg aacaccgccg gtccgtcacc
     1501 gctgtcggcc gccgccagat cgaagccgca ggcctcgcaa gccggagaga ccttcaggaa
     1561 accctcgaag aggtggccct ctccgcagtt ggggcagcgg ccggccgcgc ccgacagcag
     1621 aggattgggc ttgctcatct atccgccgcc gtgggctccg aagatcacgt agatgaaggc
     1681 gaacaggaac agccacacca cgtcgacgaa gtgccagtac caggcggccg cctcgaagcc
     1741 gaagtgcttc tgtggggaaa agccgccgcc gatcaggcgg atcaggcaga ccgtcaggaa
     1801 gatggtcccg atcagcacgt ggaagccgtg gaagccggtg gccatgaaga aggacgaccc
     1861 atagaggccc gaattggccg cgccctcgcc gccgaagaag tacttgtgct ccaggatgtg
     1921 gttgtactcg taggcctgga tcgaggtgaa caggacaccg aggcagatgg tcaggaagag
     1981 gccgatcttg gcgccgcgcc ggtcgccggt ctgcagcgcg tggtgggccc aggtgaccgt
     2041 ggtgccggag agcagcaggg tcagcgtgtt gaccaacggc agctggaagg ccggcacggt
     2101 ctcgataccc tgcggcggcc agtgggccca ggcggtccgc acttcctcga tggaggacac
     2161 cgcccgcaca tggtggaaca gggccatctc gaagaatatc cagaaccagg cgacgaagaa
     2221 catcacctcc gaggcgatga acaggatcat gccgtagcgc aggccgatgg agaccaccgg
     2281 cgtgtggtcg ccctggttgg cctcgatgac cacgtcgcgc caccagacga tcatcgtgaa
     2341 gagcacgccg gcgagccctg cgaagaacag ccaggcggtg tgcgccggca ggccgaaaag
     2401 gcccttcatc caggtgacgc cgcccagcgc catgacggtg gccgcgatcg cgccgaccag
     2461 gggccagggc gacggattga ccaggtggta gtcgtgcttc acgccttcgg ccatcggtgg
     2521 tccttagtcc ctcacaaacc gcgcggccct gcgcacgcga gactcacctc gcgagaagac
     2581 cggttcgcgg gacgctatag ccctgccgcg cggggtccgc caaggggaaa gggccagtct
     2641 tcgcctcccc gcacgcggcg cgacctagtc cgccgctttc gccgccgggg gcttcacgtc
     2701 ctgggctggg tagaaggtgt aggagagggt gatggacttg ccgttcttcg tctcgaagtc
     2761 ctgggcgtat ttcggatcga cgaagtagag caccggcatc tccaccgtgg cgccggccgc
     2821 gaccgtctga tcggaaaagc agaagcagga gagcttgcgg aaatagacgg cggcctgctc
     2881 gggcacgacg ttgaacaccg cgcgcgcggt gacgggcttg tcggcgtggt tggtgacctt
     2941 gaacgtcgcc accgcggtct cgccgatctt caccgtctgg gcggcctgtt cggcggagaa
     3001 atcccaggga aggccgcgga cgttggtgtc gaaatggatc tgcagcgtct ggtccagcac
     3061 ccggtcaggc gcggtctcgg ccttgcgcac cgtgccgccg tagccggtca cctggcagaa
     3121 ggcccggtag agcggcaccg aggcgtaggc cgcgccgacc ataccggcga tcaccgcgcc
     3181 gcagatcagg gctacgccgc cgttgcggcc gaacggaccc ggccccgaag gcttggaagg
     3241 gggaggttta gaagggttgc tgggtgacac tggcgccgag cctgacgatg gtgacgacga
     3301 aaaccaggac gacgaacagc accaggccga gcgcaagcgc gatgttgcgg ccgcggcggg
     3361 ccttggcctc gacgttggac tcgcgggcgg gatcgctcat ctaggacagc tccagcggct
     3421 tgatccgcat caggtgctcc gccagcaggg tggcgaagag cagggtcagg tagaggatcg
     3481 aaaaggcgaa caggttgcgc gcgtccttgg cgcccgcgcg gacatcatag aggccgtcat
     3541 cgttgcgctg cttgccgacc tcccccgcgt gactgcggaa gaggcggatg gcgagtagca
     3601 ggaagacgag gccgcccacg gccgccaccg cgagatagta gggtccgccc aggccggtga
     3661 gcaccgggac caggcagagc ggcgtgaaga ggaagctgta aatcaggatc tgcttgcggg
     3721 tcgaggcggg gccggccacc accggcatca tcggcacgcc ggccttcttg tagtcctcgc
     3781 tggtgtagag gctgagcgcc cagaagtgcg gcggggtcca catgaagatg atggcgcaga
     3841 gcagccaggc gttgagcgga accgacccgc tcgccgccgc ccagccgatc acaggcggca
     3901 gggcgccggc caggccgccg atgacgatgt tctgcgccgt ccagcgcttc agccagaccg
     3961 tgtagacgac cgcgtagaag aagatcgtga aggccagcag gcccgccgcc agccagttca
     4021 gcgccatgcc catcagcatg accgagaaca tcgagagcac gacgcccagc gctagggcgt
     4081 cggcgccctg gacccggccg gccggcaccg ggcggctgcg ggtgcggcgc atcttggcgt
     4141 cgatgtcggc gtcgtaccac atgttgagcg aggccgaggc cccggccccc acggcgatgc
     4201 agaggatggc gaccccggcc aggatcgggt tcacccagcg gccggcgcag accaggcccg
     4261 tcaggccggt gaacaccacc agcgacatga cgcgcggctt cagaagctgc acgaagtcct
     4321 gccagcgggc aggcgccttt gcggtgatcg aggcggcctc agtcatggcc atgacactac
     4381 tctcaaatga tcgaagggcg cgaaccctgc ggttcgcgcc ccccggatgg tttttgggcg
     4441 gaagccccgg gccctagtgg ctgtcggcct cgaccaccgg cagttcgttg aactggtgga
     4501 acggcggcgg cgacggcagg gtccattcaa gcgtcgtggc gccttcgccc catggattgg
     4561 cctcggcctt gcggcgagag accatggcgt cgatcaggac gatgatgaag acgccgacgc
     4621 cgaccagggt gatcacgtag ccgatcgagg acaccttgtt ccagaaggcg aagccctccg
     4681 gatagtccac gtagcggcgc ggcatgccct gcaggcccag gaagtgctgc gggaagaaga
     4741 tcacgttgac gccgacgaag gtgatccaga agtgcagcgc gcccagccac tcgcggtact
     4801 tcacgcccca catcttctcg aaccagtagt agaagccggc gaagatcgcg aagacggcgc
     4861 ccaggctcag cacgtagtgg aagtgggcca ccacgtagta ggtgtcctgg aactggtagt
     4921 cgacgccggc attggccagg acgaccccgg tgacgccgcc gagcgtgaac aggaagatga
     4981 agccgatcgc ccacagcatg ggcgtcttga agtcgatcga cccgccccac atggtcgcga
     5041 tccagctgaa caccttgatg ccggttggca cggcgataac catggtggcg gccacgaaat
     5101 aggccgtcag gttcacgttc atgccggtgg tgaacatgtg gtgggcccag accaggaacc
     5161 cgatgaaacc gatggcgacc atggcgtagg ccatggcgag atagccgaac accggcttgc
     5221 gcgagaaggt ggagacgatg tggctgatca tgccgaagcc cggcaggatc aggatgtaga
     5281 cctccgggtg accgaagaac cagaacaggt gctggtacat caccgggtcg ccgccgcccg
     5341 ccgcgtcgaa gaagtgggtg tggaagttgc ggtcggtgag cagcatggtg atcgcgccgg
     5401 ccagcacggg cagcgagagc agcagcagga acaccgtcac caggatcgac cagacgaaca
     5461 gcggcatgcg gtgcagggtc atgcccggcg cgcgcatgtt gaagatggtg gtgatgaagt
     5521 tgatggcgcc gaggatcgag ctcgcgccgg ccaggtggat ggccaggatc gcgcaatcca
     5581 tcgctggacc tgtgtgcccg cttgtcgata gcggggcgta catggtccag ccgccgccga
     5641 accctcgtcc cggcccgcca tcgacgaaca tcgacgtaca catcatgatc cacgaggcga
     5701 ccagcagcca gaacgagatg ttgttcatcc gcgggaaggc catgtccggc gcgccgatca
     5761 tgatcggcac gaaccagttg ccgaccccgc caatcatggc aggcatgacc atgaagaaga
     5821 tcatgatcag ggcgtgggcg gtgaccacca cattgtagcc gtgcttggag ccctcgatca
     5881 gcccgatctg ggcgatccag gagttgggct ggaagatctg aatgccgggc tcatagagct
     5941 cccatcggat cagacccgac agcgccccgc ccaccaggcc cgccatgatg gcgaacagga
     6001 tgtagagggt gccgatgtcc ttgtggttgg tcgagaacag ccagcggacg atgaagcccg
     6061 gcttgtggtc gtggctgtcg tggctgtcgt cgtgggattt tgcgccgtag gccatcttac
     6121 gcgggtccct gatcagtgcg tggc
//
LOCUS       DATAJL010000732         1505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_95726,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000732 DATAJL010000000
VERSION     DATAJL010000732.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95726"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..223)
                     /locus_tag="VHN39_13980"
     CDS             complement(<1..223)
                     /locus_tag="VHN39_13980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007675000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavoprotein"
                     /protein_id="HEX2817503.1"
                     /translation="MPQEGQRQGEQPRLVVGISGASGIVYGLRALDACRELGIQSHLV
                     MSKAAALTLSQETSLSPADVNARASVVHKV"
     gene            350..523
                     /locus_tag="VHN39_13985"
     CDS             350..523
                     /locus_tag="VHN39_13985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF465 domain-containing protein"
                     /protein_id="HEX2817504.1"
                     /translation="MALEARIRELGSRHQSLEDAIQDELRRPAADDIRLKELKRQKLR
                     LKEEMESLRGQMH"
     gene            complement(560..1234)
                     /locus_tag="VHN39_13990"
     CDS             complement(560..1234)
                     /locus_tag="VHN39_13990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell cycle transcriptional regulator TrcR"
                     /protein_id="HEX2817505.1"
                     /translation="MSTDILMPKATAVWLVDNTSMTFEQIADFAGLHPLEVKGIADGE
                     VARDIRGADPIANGQLSREELDLAEKNDKHKLVALKSRHAEYLKPQKKAPRYTPVSRR
                     QDRPDAIAWFLRNHPEVADAQLARILGTTKATIDQVRNRTHWNSANIKPVDPVTLGLS
                     TQMELDAVVKKAAEKKAKDDKRKGIVEPEGPTLIPASETGVIEDDEPAHAEHTPESVF
                     EDEDED"
BASE COUNT          239 a          464 c          508 g          294 t
ORIGIN      
        1 agaccttgtg gaccacgctg gccctggcgt tgacgtcggc cggcgagagg ctggtttcct
       61 gggagagggt gagggccgcg gccttgctca tcaccaggtg agactggatc cccagctcgc
      121 gacaggcgtc gagcgcgcgc aggccataga cgatccccga ggcgccggag atgcccacca
      181 ccagccttgg ctgttcgccc tgtctttggc cttcctgggg cataagagcg gtccttaacg
      241 cgccaacgac cggcttcgtc tcagccggtc atttgcaaac atatgtgatc tgacagccgg
      301 gcatagcggg tgttcactat ggtctccaac agcaaggagg ccactcgtca tggcgttgga
      361 agcccggatc cgtgaactcg gatcccgcca ccagtccctc gaagatgcca ttcaggacga
      421 attgcgaagg cccgccgcgg acgacatcag gctcaaggaa ctcaagcgac aaaagctcag
      481 gctgaaggaa gaaatggaaa gcctgcgcgg ccagatgcac tagggcccgt tccctccctc
      541 aagggggagg ggagaatacc taatcctcgt cttcgtcctc gaagaccgat tccggcgtgt
      601 gctcggcgtg cgcgggctcg tcgtcctcga tcactccggt ttccgacgcc ggtatcaggg
      661 tcgggccttc cggctcgacg atgcccttgc gcttgtcgtc cttggccttc ttctcggcgg
      721 ccttcttgac caccgcgtcg agttccatct gggtggagag gcccagcgtc accgggtcga
      781 ccggcttgat gttggccgag ttccagtggg tgcggttgcg cacctggtcg atggtggcct
      841 tggtggtgcc caggatgcgg gcgagctggg cgtcggccac ctcggggtgg ttgcgcagga
      901 accaggcgat ggcgtccggc cggtcctggc ggcgcgacac cggcgtgtag cgcggcgcct
      961 tcttctgcgg cttcagatat tcggcgtggc ggctcttcag cgcgaccagc ttgtgcttgt
     1021 cgttcttctc ggcgaggtcg agttcctcgc ggctgagctg gccgttggcg atcgggtcgg
     1081 cgccgcggat gtcgcgcgcc acttcgccgt cggcgatgcc cttcacctca agcggatgca
     1141 ggccggcgaa atcggcgatc tgctcgaacg tcatcgaggt gttgtcgacc agccagacgg
     1201 cggtcgcctt cggcatcagg atgtcagtgc tcatggtccc ggtcttctct gggcgacggc
     1261 tctaccgtgc gtcggaaatg aaggcgcccg gcctttcggc cgggcggtga ggcaggttct
     1321 ataggccgga tcagaggttt gggaaactta gattgtattc ctccccagcg cgaagcgcgg
     1381 tcagggggag ttggcctgaa aagccggagg gggcttccgc cgaggccgcg gcagccaaca
     1441 tcccgaacgc cggagaggaa accccctcag tcagcctggc ttcaggcatg gttgtcgaac
     1501 ttgcc
//
LOCUS       DATAJL010000733         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108490,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000733 DATAJL010000000
VERSION     DATAJL010000733.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108490"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..422)
                     /locus_tag="VHN39_13995"
     CDS             complement(<1..422)
                     /locus_tag="VHN39_13995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2817506.1"
                     /translation="MARNLWVSVLAAVAIAGSSVAAAAVPANLTAALGDTKRPPADSS
                     RDMARKPAELLALGEVKPGQKVADFMMGGGYFTRILSAAVGPKGTVYAYQSAEFIKFR
                     AAYGTEQSTVVADYKNVTPLTAPLSAVGLPDGLDMVLTV"
     gene            638..1930
                     /locus_tag="VHN39_14000"
     CDS             638..1930
                     /locus_tag="VHN39_14000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817507.1"
                     /translation="MTAGAVVEEIPGVVAEPLQGAKRIRLLLYAGVPILIINFAAPYQ
                     GLIGLPIVFFLKNRLHLTAPETAKFNLIVAIPLFIGFVFGFIRDRWSPFQGDRGHLVV
                     FGLACAVLYVVLAYAPPTYAVWVVGGTLLVALMQFVAGAAAGLASAVGRHHAMAGQMS
                     TVMNVATLAPQFMAMLLGGILAGFLEGAQAVTAARTLFLLGAGLMLVMTAFGALGPRR
                     LFDDAMAGAETRRLTLGADIARLIKTWAVWPVVIIQLLWQFGPAAGLALQYHMANELH
                     ASDAQVGAFFAIFYGGFIPMFLLYGFLARRLRLGALLWIGAIMAVPQMVSLLFIHSAG
                     GALLAAIPLGLLGGIGQAAFTDLAIRSCPKGLEGTMMMLFLALFWISQRFGDLWGANL
                     YSSPGGYNLTVYVTIALYAAILPVILLVPKAIKAGRDA"
     gene            2041..2457
                     /locus_tag="VHN39_14005"
     CDS             2041..2457
                     /locus_tag="VHN39_14005"
                     /inference="COORDINATES: protein motif:HMM:TIGR04433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UrcA family protein"
                     /protein_id="HEX2817508.1"
                     /translation="MRLSALATLTAAAALVCAAPAFAQTVDELTVTGHLNTSRLQSLT
                     ERVSFADLDLTRHADREALRLRVNDAARRVCTQLNQDSPNPANMGRSCQEVAVRGALD
                     QVRYAFADARDQAYADTYGAPASATAPDRDPEPDPR"
BASE COUNT          345 a          960 c          816 g          451 t
ORIGIN      
        1 acggtcagca ccatgtccaa cccgtccggc aggccgaccg cggagagcgg cgcggtcagc
       61 ggcgtgacgt tcttgtagtc ggcgactacc gtggactgct cggtcccata ggccgcccgg
      121 aacttgatga actccgcgga ctggtaggca tagaccgtgc ccttcggtcc gaccgcggcg
      181 gacaggatgc gggtgaaata gccgccgccc atcatgaagt cggcgacctt ctgcccgggc
      241 ttcacctcgc ccagcgccag gagctcggcg ggcttgcgcg ccatgtcgcg cgaactgtcg
      301 gccggcggcc gcttggtatc gcccagggcc gccgtcaggt tcgccggaac cgcggctgcc
      361 gccacactcg acccggcgat cgccaccgcc gccagaaccg aaacccatag attgcgagcc
      421 atgcccgaag cctcccctgt tgcgcgtttg ggcaagccta tcaccggttt ccggtcccgc
      481 gcagccgtcc cgcacggaaa acctgcatcg tccgcaggcg ccgggctggc gcgcggcatg
      541 gcgcggcgag atgggccttc cgcgaacgtc attctcccgc tacgcctaac ctgttcgggg
      601 agacttgcat ggatgtgatc gggctcgggg tctggctatg acggcgggcg cggtcgtcga
      661 ggagattccg ggcgtcgtgg ccgagccgct gcagggcgcc aagcggatcc ggctcttgct
      721 ctacgcgggc gtgccgatcc tgatcatcaa cttcgccgcg ccctatcagg gcctgatcgg
      781 cctgccgatc gtcttctttc tgaagaaccg cctgcacctg accgcgcccg agacggcgaa
      841 gttcaatctg atcgtcgcca tcccgctgtt catcggcttc gtgttcggct tcatccgcga
      901 ccgctggagc ccgttccagg gcgaccgcgg ccacctggta gtgttcggcc tggcctgcgc
      961 ggtgctctat gtcgtgctgg cctatgcgcc gcccacctat gccgtctggg tggtgggcgg
     1021 gaccctgctg gttgcgctca tgcagttcgt cgccggcgcc gcggcgggct tggcctccgc
     1081 ggtcgggcgc catcacgcca tggccggcca gatgagcacg gttatgaatg tcgccaccct
     1141 ggctccccag ttcatggcca tgctgctcgg cggcatcctc gcgggctttc tggaaggcgc
     1201 ccaggcggtg accgctgcgc gcaccttatt cctgttgggc gcgggcctga tgctagtcat
     1261 gaccgccttc ggggccctgg gccccaggcg cctcttcgac gacgccatgg ccggggcgga
     1321 gacgcgtcgc ctgaccctcg gcgctgacat cgcgcgcctc atcaagacct gggcggtctg
     1381 gccggtggtg atcatccagc tgctctggca gttcggcccc gccgcgggcc tggcgctgca
     1441 gtaccatatg gccaacgagc ttcacgccag tgacgcccag gtcggcgcct tcttcgccat
     1501 tttctacggc ggcttcattc cgatgtttct tctctacggc ttcctcgcgc gccgactgcg
     1561 gctcggggcc ctgctgtgga tcggcgcgat tatggccgtg ccgcagatgg tcagcctgct
     1621 tttcatccat tccgccggcg gcgcattgtt ggcggccatc cccttgggac ttctgggcgg
     1681 catcggccag gcggccttca ccgacttggc catccgctcc tgccccaagg ggctggaggg
     1741 caccatgatg atgttgttcc tggcgctgtt ctggatctcc cagcggttcg gcgacctttg
     1801 gggcgccaac ctctacagct cgcccggcgg ctacaacctg acggtctatg tgaccatcgc
     1861 cctctacgcg gcgatcctgc cggtgatcct cctggtgccc aaggcgataa aggcgggcag
     1921 ggacgcctga tccgcgtcgg cccggaacct catcgccggt ctcggggttt gcaaagcctt
     1981 ccccggaccg cgccgcctcc ccttcgctga ctgcggtcct tcacagaagg aaccgcgacc
     2041 atgcgcctct ccgcgctcgc caccctcacc gccgccgccg cgctcgtctg cgccgccccg
     2101 gcgttcgccc agaccgtcga tgagctgacc gtcaccggcc acctcaacac ctcgcgcctg
     2161 caaagcctca ccgagcgggt cagcttcgcg gacctggacc tcacccgcca cgccgaccgc
     2221 gaggccctgc gcctgcgggt caacgacgcc gcccgccggg tctgcaccca actgaaccag
     2281 gacagcccca acccggccaa tatgggccgt tcctgccagg aggtcgccgt gcgcggcgcg
     2341 ctcgaccagg tgcgctacgc cttcgccgac gcccgcgacc aggcctacgc cgacacctac
     2401 ggcgcgccgg ccagcgccac ggcccccgac cgcgaccccg aacccgaccc tcgctaggcg
     2461 atttcaaccg ggcggcggaa cgatgccgcg ccgcccgggt tggaccccta tgccgggcct
     2521 gcagatccag ccgcactcgc gccacatcag cgggctggcg gtcgcgttcc tc
//
LOCUS       DATAJL010000734         2130 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_84212,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000734 DATAJL010000000
VERSION     DATAJL010000734.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84212"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..747)
                     /locus_tag="VHN39_14010"
     CDS             complement(<1..747)
                     /locus_tag="VHN39_14010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817509.1"
                     /translation="MRSIYLAAVSAIATLASAGSALAGVSELQVHTLASATVSLPAVR
                     DDQTSHASAGLFSDSHDNDVSDLSFANGVALATFGALHAYADAFDFKSPGGVLELPDA
                     QATAEARSSEFFDSTKFIGGMTYTQKVVVSGFTSPQPQFGPGPDAVLNYRLDDLTTGD
                     TLFIGAWFLGRPNVFNVSFVAPTGHETQLNMDLSVFAYDGAQSMPSTVFSDFSHTVTN
                     YIYAADGGAPDVIGASGHDYALPTGGVPEPG"
     gene            964..2097
                     /locus_tag="VHN39_14015"
     CDS             964..2097
                     /locus_tag="VHN39_14015"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2817510.1"
                     /translation="MSIALDDYSKLVGEIYESSLDVSAWPATMEAACRFVGTPMGALG
                     TYSVLEKRFELQILSGYEPPWVDLYREKYGAMNPLAGMTNGRGVGDIFSLSGAGLIGA
                     FEGDPMYEEWVKPQRILDGADVILDATVTHAATLSFVTKVEDGLLTADQLHRIELIFP
                     HVRRSVLISRVLKMHQRSEGELSGVVDGLAAGVFILAARGEVLRSNASGAQMLSAAAL
                     MTAPGGVLRFRNVAADRALREALAGVEAGAATLGGKGTSIALKAPSGESYVAHVLPLS
                     AAAAEDDLEAPGGKVAVFVSATHPDLAPALDTLARTYGLTAAESRVARALAEVGSTPM
                     IAQALGVTVATVRTHLRSLFEKTGARRQVEIVRLLQGFASPFG"
BASE COUNT          365 a          673 c          765 g          327 t
ORIGIN      
        1 gccgggttcc ggcacgccgc cggtcggcaa ggcgtagtcg tgaccgctgg cgccgattac
       61 gtctggagcg ccgccgtcgg cggcgtagat gtagttggtg acggtgtggc tgaaatcgga
      121 aaagaccgtg ctgggcatgg actgcgcccc gtcataggcg aacaccgaca ggtccatgtt
      181 cagctgggtt tcatggcccg tgggggcgac gaacgaaacg ttgaacacgt tcggccggcc
      241 caagaaccac gcgccgatga agagggtgtc gccggtggtg aggtcgtcga ggcgatagtt
      301 gagcacggcg tccgggccgg ggccgaactg cggctgcggc gacgtaaaac ccgagacgac
      361 gaccttctga gtataggtca tcccgccgat gaacttcgtt gagtcgaaaa actccgagga
      421 tctcgcctcg gcggtcgcct gggcgtcggg cagttcgagg acgcccccag gcgacttgaa
      481 gtcgaaggcg tccgcatagg cgtgcagggc cccaaaggtc gccagggcga cgccgttggc
      541 gaacgacaga tccgagacgt cgttgtcgtg agaatcggaa aacagccccg cgctggcgtg
      601 gctggtctgg tcatccctga cggctggcag ggacacggtc gcgctggcca gggtatggac
      661 ctgcagttcg gagacgccgg cgagggcgga tcccgccgac gccagggtgg cgatggccga
      721 aacggccgcc aggtagatcg aacgcatgga cacactccac cacaagcgcg gcgccgggca
      781 gtgaaccggg cgccaaaaca gcaagcctag agttgcgcgc gagcggccgc ctcatccgat
      841 cggatgaggc cgggcgccgc atcggcaggc gccgaggccg ctggcgggga atggaccaag
      901 cggttctttc gcgttcacac aaccacgcta gattggcgca cgacccggcc cagagacctt
      961 aagatgtcca tcgcgctcga cgactattca aagctggtgg gcgagatcta cgagtcctcg
     1021 ctggatgtct ccgcatggcc ggcgaccatg gaggcggcct gccggttcgt ggggacgccc
     1081 atgggcgcgc tcggcaccta ttcggtcctc gagaagcggt tcgaactgca gatcttgtcc
     1141 ggctacgagc cgccttgggt cgacctctat cgggagaagt acggggcgat gaatccgctg
     1201 gccggcatga ccaacggacg aggcgtcggc gacatcttct ccctttccgg cgccggtctc
     1261 atcggcgcgt tcgaaggcga tccgatgtac gaggaatggg tgaagcccca gcgcatcctg
     1321 gatggggccg acgtgatcct cgacgcgacg gtgacgcatg ctgcgaccct gtccttcgtg
     1381 accaaggtcg aggacggact gctcaccgcc gatcagctgc acaggatcga gctgatcttt
     1441 ccgcacgtcc ggcgcagcgt cctgatcagc cgcgtcctga agatgcacca gcgcagcgaa
     1501 ggcgaactga gcggcgtcgt ggacggcctg gcggcggggg tgttcatcct ggccgcccgc
     1561 ggcgaggtgc tgcgaagcaa tgcgtcgggc gcacagatgc tgtcggcggc cgcgctgatg
     1621 accgcgccgg gcggcgtgct gaggttcagg aacgtcgcgg ccgaccgcgc cctgcgcgag
     1681 gccctcgccg gcgtcgaggc cggggccgcg acactcggcg gaaaggggac atccatcgcg
     1741 ctgaaggccc cgtcgggcga gagctacgtg gcccatgtgc tgcctctgtc ggcggccgcc
     1801 gcggaggacg atctggaggc gcccggtggc aaggtcgccg tctttgtgag cgccacccac
     1861 ccggacctgg ctcccgcgct ggacactctg gcccgcacct atgggctgac agccgccgaa
     1921 agccgggtgg cccgggcgct ggcggaggtg ggatcgacgc cgatgatcgc gcaggccctg
     1981 ggggtcacgg tggccaccgt gcgcacgcac ctgcgcagcc tgttcgaaaa gaccggcgcc
     2041 cggcgtcagg tcgagatcgt ccgtctgctc caggggttcg ccagcccgtt cggttagagc
     2101 tatatcgcag ccgatgaccg acaggaccct
//
LOCUS       DATAJL010000735         3957 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_63122,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000735 DATAJL010000000
VERSION     DATAJL010000735.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3957
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63122"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..752
                     /locus_tag="VHN39_14020"
     CDS             <1..752
                     /locus_tag="VHN39_14020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0019346 - transsulfuration [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEX2817511.1"
                     /translation="VRLILMESPGSLSFEMQDMTRVAELARARGILTVADNTWGAGYL
                     YKPLDHGIDIAVQALTKYVGGHSDVFMGSAAANDRKLVRALEDGVIHLGWAVTGEDAY
                     QMLRGLRTLPTRLARHGESSLAIAAWLQGRPEVARVYHPALPGAPGHELWTRDYTGAC
                     GLFAFALRPGPEAAVNAFLDELTLFGLGFSWGGFESLAISCDHQLKTRTLHPDYGGPL
                     IRLHIGLENADDLIADLERALSVYAGRAGLS"
     gene            749..1612
                     /locus_tag="VHN39_14025"
     CDS             749..1612
                     /locus_tag="VHN39_14025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase"
                     /protein_id="HEX2817512.1"
                     /translation="MSDNLEVFIAEEGLPESFRRTAELVCEPLAARAQRRRIDRKRTA
                     VIGLCGAQGSGKSTIARYAAGLLEQRGMRAVALSLDDFYLTHDARQRLAREVHPLLAV
                     RGPPGTHEVGMAGAAIDQLRAKGKVTLPRFDKATDNRTPRGTWQTLASPVDVIILEGW
                     CVGAVSQGRAALATPVNDLERDEDPQGIWRAYVNDQLDGPYQALFTRLHDLILLEAPS
                     FEVVAGWREEQEAKLRARTLQVGGGGGMAPKEIARFVAVYERLTRWILAEMPGRADWV
                     ITLDTERNPYA"
     gene            1646..2050
                     /locus_tag="VHN39_14030"
     CDS             1646..2050
                     /locus_tag="VHN39_14030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817513.1"
                     /translation="MSNTTFGLLISAMLVASPALAQTTGDRATAAPAKPAPTTGTTIS
                     GVTVEGARPMPSKGCSSRDKVCVAMVVAELKARYPEQLLQWCHEVERRAVVSNLNIDD
                     INSTSGSNVAHSESGQFAPPAVARSACASDKK"
     gene            2075..2482
                     /locus_tag="VHN39_14035"
     CDS             2075..2482
                     /locus_tag="VHN39_14035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817514.1"
                     /translation="MKRVLTLAGAAVLFAAVANAQAPSPQPAPTPTAPATAPAPDKSG
                     ATVSGVTVRPLPRKPCAPKDKDCVAMVMAEVKNLYPEQLKSFCFQQQMDVMRQDMQAN
                     MAGWCEGPGLGAAAICSHHVSPVVKQVCAPDKK"
     gene            complement(2498..2574)
                     /locus_tag="VHN39_14040"
     tRNA            complement(2498..2574)
                     /locus_tag="VHN39_14040"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2538..2540),aa:Arg,seq:tct)
     gene            complement(2586..2891)
                     /locus_tag="VHN39_14045"
     CDS             complement(2586..2891)
                     /locus_tag="VHN39_14045"
                     /inference="COORDINATES: protein motif:HMM:NF016674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ETC complex I subunit"
                     /protein_id="HEX2817515.1"
                     /translation="MLARIFRPSKTAMQSGHAKATTWVLEFEPTDARRQDPLMGWTQT
                     ADTEGQVRLEFETKDEAVRYADQHGIAFQLIDPKPAKRILKAYADNFAFGRKVPWTH"
     gene            complement(2921..2997)
                     /locus_tag="VHN39_14050"
     tRNA            complement(2921..2997)
                     /locus_tag="VHN39_14050"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2961..2963),aa:Pro,seq:tgg)
     gene            3089..3667
                     /locus_tag="VHN39_14055"
     CDS             3089..3667
                     /locus_tag="VHN39_14055"
                     /inference="COORDINATES: protein motif:HMM:NF014816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2817516.1"
                     /translation="MLTLYFAPGASSMAPHIALFETGAAFEGRPLSFKKAENRTAEYL
                     AINPLGQAPTLVIDGRPLTEVAAILFYLARTYPDAGLLPDDAESQARVISWMSFIAAT
                     VHPARRQGLDHARKIYALADQRLGPRDWTVGDCYSIADIHLFRLFWRFLHSLKPPAEE
                     FPNLMRLHDRVLKRPAVQRTLEVESAVGYELP"
     gene            complement(3664..>3957)
                     /locus_tag="VHN39_14060"
     CDS             complement(3664..>3957)
                     /locus_tag="VHN39_14060"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF015048.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX2817517.1"
                     /translation="ALRRHANGLGLVHGGMLSAFMDGVLAGAVWRGTGKTAVTIHLSI
                     DFLHMARVGEWVMGEARLTRATRDVAFAEGRAYVGDHDVVRCTGIFKLMGGER"
BASE COUNT          654 a         1411 c         1285 g          607 t
ORIGIN      
        1 cggtgcggct gatcctcatg gaatcgccgg gatcgctcag cttcgagatg caggacatga
       61 cccgcgtcgc cgagcttgcc cgagcgcgcg gcatcctgac ggtcgccgac aacacctggg
      121 gcgccggcta tctctataag cccctggatc acggcatcga catcgcggtc caggcgctca
      181 ccaaatacgt cggcggtcac tccgacgtct tcatgggttc ggccgcggcc aacgatcgca
      241 agctggtgcg cgcgctggag gacggagtca tccacctggg ctgggcggtg accggcgaag
      301 acgcctacca gatgctgcgg gggctgcgga cgcttccgac ccggctggcc aggcacggcg
      361 agagcagcct cgccatcgcc gcctggctgc aggggcggcc ggaggtggcg cgtgtctacc
      421 accctgccct gcccggcgcg ccgggccacg aactctggac gcgtgactac accggcgcct
      481 gcggcctctt cgccttcgcc ctgcggccag gccccgaagc cgccgtcaac gccttcctcg
      541 acgagctgac gctgttcggc ctgggcttct cctggggcgg cttcgagagc ctggcgatct
      601 cctgcgacca tcagctcaag acccgcaccc tgcatcctga ctacggaggg ccgttgatcc
      661 ggctgcacat cgggttggag aacgccgacg acctgatcgc cgacctcgaa cgggcgctga
      721 gcgtctacgc gggaagggct ggtctctcgt gagcgataac ctggaggtct tcatcgccga
      781 ggagggcttg cccgaatcct tccgccgaac ggcggagctg gtctgcgaac ccctggccgc
      841 gcgcgcccag cgccgccgca tcgaccgcaa gcggaccgcc gtcatcggcc tctgcggcgc
      901 ccaggggtcc ggcaagagca ccatcgcgcg ctacgccgcg ggcctcctgg agcagcgcgg
      961 catgcgcgcc gtggccctgt cgctcgacga cttctacctg acccacgacg cccgccagcg
     1021 gctggcgcgg gaggtccacc cgctgctggc cgtgcgcggc ccgccgggca cccacgaggt
     1081 cggcatggcc ggcgcggcca tcgaccagct ccgcgccaag ggcaaggtca ccctgccccg
     1141 cttcgacaag gcgacggaca atcgcacgcc ccgcgggacc tggcagaccc tggcctcgcc
     1201 ggtggacgtg atcatcctgg agggctggtg cgtgggcgcg gtcagtcaag gccgggcggc
     1261 cctagccacg ccggtcaacg atctggagcg cgacgaggac ccgcaaggca tttggcgcgc
     1321 ctacgtcaac gaccagctcg acggccccta ccaggcgctc tttacccgcc tgcacgatct
     1381 tatcctgctg gaggcgccca gcttcgaggt ggtcgcgggc tggcgcgagg agcaggaagc
     1441 caagctgcgc gcccgaacgc tgcaagtggg gggcggcggc ggcatggcgc cgaaagagat
     1501 cgcccggttc gtcgccgtct acgagcggct gacccgctgg atcctcgccg agatgccggg
     1561 gcgcgccgac tgggttatca cactcgacac agagcgaaat ccctacgcct gaattccgcg
     1621 ctaaaagcca agccctggag gcgacatgtc gaacacaacc ttcggactgc tgatctccgc
     1681 gatgctcgtg gcaagccccg ccctggccca gaccacggga gaccgggcca cggcggcgcc
     1741 tgccaagcct gcccccacca ctgggacgac gatcagcggc gtcacggtgg agggagcccg
     1801 ccccatgccc tcgaagggct gttcctcaag ggacaaggtc tgtgtggcca tggtcgtggc
     1861 cgaactgaag gcgcgctacc ccgagcagct cctgcaatgg tgccatgaag tggaacggcg
     1921 agccgtcgtc tcgaacctga atatcgacga catcaactcc acgtccggca gcaacgtcgc
     1981 tcactccgag tccggccagt tcgcgccgcc ggccgtcgcc aggtccgcct gcgcgtcaga
     2041 caaaaagtag cggctgcggt agggcttgcg accgatgaaa agagttttga ccctcgccgg
     2101 cgccgcggtg ctgtttgccg cagtcgccaa cgcccaggcg ccgtcgccac aacccgcgcc
     2161 cacgccaacc gcgccggcca ctgcccccgc ccctgacaaa tccggcgcga cggtcagcgg
     2221 cgtcacggtg aggccgctgc cccgcaagcc atgcgcgccc aaagacaagg actgcgtcgc
     2281 catggtcatg gcggaggtga agaatctcta ccctgagcag ctgaagtcgt tctgcttcca
     2341 gcagcagatg gacgtcatgc gccaggacat gcaggccaat atggccggct ggtgcgaagg
     2401 gcccggattg ggcgccgcgg cgatctgcag ccaccacgtc tcgccggtcg tcaaacaggt
     2461 ctgcgcgccc gacaagaagt aacctgaacc gtcgcgctgg cgcgccctgc aggactcgaa
     2521 cctgcaaccg ctcgcttaga aggcgagtgc tctatccggt tgagctaagg gcgccgaagc
     2581 cagcgtcagt gcgtccacgg gaccttgcgg ccaaaggcga agttgtccgc ataggccttg
     2641 aggatccgtt tcgcgggctt gggatcgatg agctggaagg cgatgccgtg ctggtcggcg
     2701 tagcgcacgg cctcatcctt ggtctcgaac tcaagcctga cctggccttc ggtgtcagcc
     2761 gtctgggtcc agcccatcaa ggggtcctgc cgtctggcgt ccgtcggttc gaactccagc
     2821 acccaggtgg tggctttggc gtgacccgac tgcatggcgg tcttggacgg gcggaagatg
     2881 cgcgcgagca tggacggaac ctcaagtcgt tggccggcga tggtcggggc ggcaggattt
     2941 gaacctgcga ccctctgctc ccaaagcaga tgcgctacca ggctgcgcta cgccccgaaa
     3001 gcgccggcgg tgttgcgata taagcgtttt cgcctttcgg caacgtaagc cgcagactta
     3061 ggctcccggc gacgggaggc cgcaccccat gctcacgctc tacttcgcgc caggcgccag
     3121 ctccatggcg ccgcacatcg ccctcttcga aaccggcgcc gcgttcgaag gccggccact
     3181 ctcgttcaag aaggccgaga acagaaccgc ggaatatctg gcgatcaatc cgctgggcca
     3241 ggcgccgact ctggtcatcg atggccgccc gctcaccgag gtggccgcga tcctctttta
     3301 ccttgccagg acctatccag acgctggcct gctgcccgac gacgccgaga gccaggcccg
     3361 ggtcatctcc tggatgtcgt tcatcgccgc gaccgtgcac ccggccaggc gccagggcct
     3421 ggatcacgcc cggaagatct atgcgctggc cgaccagcgg ctcggccccc gcgactggac
     3481 ggtgggcgac tgctattcga tcgccgacat ccacctcttt cggctgttct ggcggttctt
     3541 gcattcgctg aaaccgccgg ccgaggagtt ccccaacctc atgcggctgc acgaccgggt
     3601 gctgaaacgc cccgcggtcc agcgaacgct ggaggtcgag tccgccgtcg gctacgagct
     3661 gccctagcgc tcgccgccca tcagtttgaa gattccggtg cagcggacca cgtcgtggtc
     3721 cccgacgtaa gcgcggccct ccgcaaaggc gacgtcccgg gtggcccgcg tcagccgagc
     3781 ctcgcccatc acccattcgc ccacccgcgc catgtgcagg aagtcgatgg acaggtggat
     3841 ggtcaccgcc gtcttgcctg tgccgcgcca caccgccccg gccagcaccc cgtccatgaa
     3901 ggccgacagc atgccaccgt gcaccaggcc caggccattg gcgtgacgcc tcagggc
//
LOCUS       DATAJL010000736         4380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69757,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000736 DATAJL010000000
VERSION     DATAJL010000736.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4380
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69757"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..1389
                     /locus_tag="VHN39_14065"
     CDS             25..1389
                     /locus_tag="VHN39_14065"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEX2817518.1"
                     /translation="MRQFDLRRISIRATPRLLTATASVAVLSLGATFALTHRAPKAPA
                     PIDPAVVSALQHAAFTQAEAQPGFSRPETVPVKLQRGETLEGAVRRAGVGPAEAQLVV
                     AMLSKTMDTVHLKAGLLIQAAVARPRAASSSVGSGEARLIGLSLRTGPASAITISRSF
                     DGALRLRELDEKLRDETAVADGAITGSLYESAEHIGATPQITAEVVKLFAHKLDFQRD
                     IQPGDAFRLVFDRKVTEAGRTVEAGDLQYAELHGVKFYRFARGSDVEYFDEFGKNIKG
                     FLLRTPVDGAHITSLFGMRKHPILGYTRAHQGIDFGAGTGTPILAAGDGVVAQAGPWG
                     GYGNWLRIRHNAGWDTGYGHISRFANGIHPGVHVHQGQVVAYVGSTGLATGPHLHYEI
                     WQNGQRVNPIGAKVPQGTVLAGPELTRFKDQKAHIDGLLGASAPRAVAVAVADSSGAT
                     RLRR"
     gene            1440..2246
                     /locus_tag="VHN39_14070"
     CDS             1440..2246
                     /locus_tag="VHN39_14070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817519.1"
                     /translation="MTTKMTRRVVELVKQRAGGLSDSSTLQDLNGVLRLMATWRSQIL
                     VNTFIAHHGARIFGGPFAGMDYVSAATEGALVPRLLGTYESELHPHLQAFAAAGLDCV
                     VDVGCAEGYYAVGLARMMPGVVVHAHDIDPKAQVACTGLAAKNGVSDRVIIGGEFPPD
                     GFEAFAGRRILVMVDTEGAEIEILQPALSPALAGMNIIVETHDLFRPGCMATMIERFA
                     PTHDIVRVDLKPKVFDAPPWLLALPHLDQLLAVWEWRGAPTPWLVMTPKP"
     gene            2302..2682
                     /locus_tag="VHN39_14075"
     CDS             2302..2682
                     /locus_tag="VHN39_14075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004624163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2817520.1"
                     /translation="MRHLPIVLAVALAALATAGAASAQSDMRARGAILAQRYCAGCHA
                     VKRTGQSPNPAAPAFRDLNMRYHIDDLGEALAEGILTGHPAMPEFKFPPRDITAVLTY
                     LKSIQTLQQASAPGYPDGGADGIP"
     gene            complement(2685..3770)
                     /locus_tag="VHN39_14080"
     CDS             complement(2685..3770)
                     /locus_tag="VHN39_14080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent alcohol dehydrogenase"
                     /protein_id="HEX2817521.1"
                     /translation="MKAAVLREVGQPLQIEQVQINKPGPHEVLIRTAAAGLCHSDLHF
                     MQGSYPHPLPAVLGHESAGIVEQVGSEVRTVKPGDHVITCLSAFCGHCEFCLTGHMSL
                     CVSPETKRGKDDEPRLSAPNGPMMQFLNLSSFAEQMLIHEHACVAIRPDMPLDRAALI
                     GCSVTTGVGAAIHTSNVRPGEMVAVIGCGGVGLSAINGAAIAGASRIFAIDTVASKGN
                     LAMEFGATDFINAAEVDSVKEVIEATKGGVHHAFEAIGLAKTAEQAFGMLRRGGTANI
                     IGMIPVGEMVSIMGAAFLGEKKLQGSLMGSNRFPVDMPRFVDFYMSGKLKLDQMISQR
                     IKLEQVNEGFEDMKKGELARSVIVFGA"
     gene            3918..>4380
                     /locus_tag="VHN39_14085"
     CDS             3918..>4380
                     /locus_tag="VHN39_14085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromate transporter"
                     /protein_id="HEX2817522.1"
                     /translation="MAARQDLMDETSAPSRAWPNPAGEVFQAFLIQGLTAFGGPVAHI
                     GYFRREFVERRAWLSEDAFADLLALAQFLPGPASSQLGMAIGLRRAGYLGLLAAWVGF
                     TLPAGAAMIALAYVAPLMTASWGQGVLHGLQLAAAAVVLQALVAMARVLAVG"
BASE COUNT          673 a         1568 c         1440 g          699 t
ORIGIN      
        1 acacccgcgt agtctggggg cgtaatgcga cagttcgatc tgcggcggat ttcgatccgc
       61 gccactccgc gcctgctcac cgcgaccgcc agtgtcgccg tgctgtcgct gggcgcgacc
      121 ttcgcgctca cccatcgcgc gcccaaggct ccggcgccca tcgaccccgc cgtcgtctcg
      181 gccctgcagc atgccgcctt cacccaggcc gaggctcaac ccggcttcag ccggcccgag
      241 acggtgcccg tcaagctgca gcgcggcgag accctggaag gcgctgtgcg gcgcgcaggc
      301 gtcggcccgg ccgaggcgca acttgtcgtc gcgatgctca gcaagaccat ggacaccgtc
      361 cacctcaaag ccggtctgct gatccaggcg gcggtcgccc ggccccgcgc ggcctcctct
      421 tccgtcggat cgggcgaagc ccggctgatc gggctttccc tgcgcacggg acctgccagc
      481 gccatcacca tctcccgcag tttcgacggg gcgctgcgcc tgcgcgagtt ggacgagaag
      541 ctgcgcgacg agaccgccgt cgccgacggc gccatcaccg gatcgctcta cgagagcgcc
      601 gagcacatcg gggccacgcc gcagattacc gccgaggtgg tcaaactgtt cgcccacaag
      661 ctcgacttcc agcgcgacat ccagccgggt gacgccttca ggctagtctt cgaccgcaag
      721 gtcaccgagg ccggccgcac ggtggaggct ggcgacctgc agtatgccga gctgcacggg
      781 gtaaaattct accgcttcgc ccgcggctcc gacgtcgagt acttcgacga gttcggcaag
      841 aatatcaaag gcttcctctt gaggacgccg gtcgacgggg cgcacatcac ctcgctgttc
      901 ggcatgcgca agcacccgat cctgggctac acccgcgccc accagggcat cgacttcggg
      961 gccggaaccg gcaccccgat cctggccgcc ggcgacgggg tggtggccca ggccggcccc
     1021 tggggcggct acggcaactg gctgcgcatc cgccacaacg ccggctggga caccggctac
     1081 ggccacatct cccgcttcgc caacggcatc catcccgggg tccatgtgca tcagggtcag
     1141 gtggtggcct atgtcggctc cacgggtctg gcgaccggtc cgcacctgca ctacgaaatc
     1201 tggcagaacg gccaacgcgt gaacccgatc ggcgccaagg tcccgcaggg cacggtcctg
     1261 gccgggcccg agctgacgcg cttcaaggac cagaaggccc acatcgacgg actgctgggc
     1321 gccagcgcac cccgcgccgt ggccgtcgcc gtcgccgaca gcagcggagc cacccgcctt
     1381 cgccgctgag gcttgctgcg gccgcgcgcc cggcgaataa ggggcgagga gggccgcgga
     1441 tgacaacgaa aatgacccgg cgggtcgtcg agctggtgaa gcagcgcgcc ggcggcttgt
     1501 cggatagctc cacactgcag gacctcaacg gcgtcctgcg gctcatggcc acctggcgct
     1561 cgcagatcct ggtcaacacc ttcatcgccc accatggcgc gcgcatcttc ggcggaccct
     1621 tcgccgggat ggactacgtg tctgccgcaa ccgagggcgc gctcgtgccc aggctgctcg
     1681 ggacctatga gtcggaactt cacccgcacc ttcaggcctt cgccgccgca ggcctggatt
     1741 gcgttgtcga tgtcggctgc gcagagggct actacgcggt gggcctcgcc cggatgatgc
     1801 ccggcgtcgt cgtccacgcc cacgacatcg atccgaaggc tcaggtggcc tgcacgggac
     1861 tggccgcgaa gaacggcgtc tccgaccggg tgatcatcgg cggcgaattc ccacccgacg
     1921 gcttcgaggc cttcgcaggc cgccgcatac tggtgatggt cgacaccgag ggcgccgaga
     1981 tcgaaatcct gcagccggcg ctgagccccg cccttgccgg catgaacatc atcgtcgaga
     2041 cccacgacct cttccggccc ggctgcatgg ccacgatgat cgagcgcttc gccccgacgc
     2101 acgacatcgt ccgtgtcgac ctcaagccca aggtgttcga cgcgccgccc tggctgctgg
     2161 ctctgccgca cctcgaccag cttctagcgg tctgggaatg gcgcggcgcc cccacgccct
     2221 ggctggtgat gacgccgaag ccttgagccg acgcttgatc ggcatcaatg cgccggtggc
     2281 ctgatcggct tgcatgggac catgagacac cttccgatcg tccttgccgt cgccctcgcc
     2341 gccctcgcca ccgccggcgc ggcctcggcg cagtctgaca tgagggcgcg cggcgccata
     2401 ctcgcccagc gctactgcgc gggctgtcat gcggtgaagc ggaccgggca aagccccaac
     2461 cccgcggcgc cggcgtttcg tgacctgaac atgcgctacc acatcgacga cctaggcgag
     2521 gccctggcgg agggcatcct caccggccac cccgccatgc cggagttcaa attcccgccg
     2581 cgcgatatca ccgccgtgct cacctacctg aagagcatcc agaccctgca gcaggcgtca
     2641 gcgccgggat atcccgatgg cggcgcggat gggattccct agtcctaggc gccgaacacg
     2701 atcaccgagc gcgccagttc gcccttcttc atgtcctcga agccctcgtt gacctgctcc
     2761 agcttgatgc gctgggagat catctggtcg agcttcagct tgccggacat gtagaaatcc
     2821 acgaaccgcg gcatgtcgac ggggaagcgg ttggagccca tcagcgagcc ctgcagcttc
     2881 ttctcgccca ggaacgccgc gcccatgatc gagaccatct cgccgaccgg gatcatgccg
     2941 ataatgttgg cggtgccgcc ccggcgcagc atgccgaaag cctgctcggc ggtcttggcc
     3001 aggccaatgg cctcgaaggc gtggtgcacg ccgcccttgg tggcctcgat cacttccttc
     3061 acggaatcca cttcggcggc gttgatgaag tcggtggcgc cgaactccat ggcgaggttg
     3121 cccttggagg cgaccgtgtc gatggcgaag atgcggctgg cgccggcgat cgccgccccg
     3181 ttgatggctg agaggcccac cccgccgcag ccgatcaccg cgaccatctc gccggggcga
     3241 acattggagg tgtggatcgc cgcgcccacc ccggtggtca ccgagcagcc gatcagggcc
     3301 gcgcggtcga gcggcatgtc cgggcggatc gccacgcagg cgtgctcgtg gatcagcatc
     3361 tgctcggcga aggacgacag gttcaggaac tgcatcatcg ggccgttggg cgccgacagg
     3421 cggggctcgt cgtccttgcc gcgcttggtc tccggcgaga cgcacaggct catgtgcccg
     3481 gtcaggcaga attcgcaatg gccgcagaag gccgagaggc aggtgatcac atggtcgccc
     3541 ggcttcacgg tgcggacctc cgagcccacc tgttcgacga tcccggcgct ctcgtggccc
     3601 agcacggccg gcagcggatg cggataggag ccctgcatga aatgcagatc ggagtggcag
     3661 aggccggcgg cggcagtgcg gatcagcacc tcgtgcggcc cgggtttgtt gatctggact
     3721 tgttcgatct gaagcggctg acccacttcg cgcagcacgg cggccttcat ggcgattccc
     3781 ctcgtgtttg gcccaacggt ccgggggcct tcgaggcaaa gccttatcgc cgatcagatg
     3841 ggccggccaa ggggttttgc cgcacgctcg cctaaatggc cccctctcat tctgaaatgg
     3901 atcgacagtc tcagtccgtg gccgcaagac aggacctgat ggacgagacg tctgcgccga
     3961 gccgggcctg gcccaacccc gccggggagg tcttccaggc cttcctgatc cagggcttga
     4021 cggccttcgg cggcccggtg gcgcacatcg gctatttccg ccgcgagttc gtggagcggc
     4081 gggcctggct cagcgaggac gccttcgccg acctcctggc gctggcccag ttcctcccgg
     4141 gcccggcctc cagccagctc ggcatggcga tcggcctgcg ccgcgccggc tatctgggcc
     4201 tgctcgcggc ctgggtcggc ttcaccctcc ccgcgggcgc agcgatgatc gcgctcgcct
     4261 acgtcgctcc tttgatgacg gcgtcgtggg gccagggcgt gctgcatggc ctgcagctcg
     4321 ccgccgcggc cgtggtgctg caggcgctgg tggccatggc gcgggtcctg gcggtagggc
//
LOCUS       DATAJL010000737         1901 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69774,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000737 DATAJL010000000
VERSION     DATAJL010000737.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1901)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1901)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1901
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69774"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..544
                     /locus_tag="VHN39_14090"
     CDS             <1..544
                     /locus_tag="VHN39_14090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817523.1"
                     /translation="GGLRSSPLNLARVLVPVAALSGMVALLSVPLNAVAGAPVHFQIT
                     DLNGAATEIPSGLPQARALLLLGFRHDDHAALDAWREGLGLSSRDSDWFEVPVIGVGN
                     SMIRAVIVRGMRSGVIGAADRARFAPAFGDAAAIAEQLGVDPSAPAAVVVDRTGHVLA
                     YASGAFDPTKAAALIHVLRP"
     gene            733..1317
                     /locus_tag="VHN39_14095"
     CDS             733..1317
                     /locus_tag="VHN39_14095"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2817524.1"
                     /translation="MDASVARVEHEWERIKYQTSDPRAQHAQIEILARDAAAVTARYP
                     GRAEPLIWQGIAESEHAAMSSGFSALSDAKASRRTFEMAYQLDRTALEAGAATSLGTL
                     YYRVPGFPIGFGDKAKARHYLAEAVTIAPDGMDANYFYGDFLITQGEYAAAGKVLQHA
                     LASPPHPDRPIWDSGRRAEIRALLAKVNAKLRSS"
     gene            1410..>1901
                     /locus_tag="VHN39_14100"
     CDS             1410..>1901
                     /locus_tag="VHN39_14100"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2817525.1"
                     /translation="MRLVNRQPNFLAIHALDVRGAHDVLELGFGPGEGIRALARLSPA
                     GRIYGVDQSSTMLAQASARNRAAILDGHVQLSCEQFDETGLPDQSVDRILAVNVAYFW
                     SDGPAVLAELDRVLRPGGRISIYVTDASTMSNWKFTASGHHRVFSAPQLTRLLADGPF
                     EESR"
BASE COUNT          290 a          645 c          627 g          339 t
ORIGIN      
        1 gggtggcctg cggagttctc cattgaatct ggcccgcgtc ttggtccccg tcgccgcatt
       61 gagcggaatg gtggccctgt tgtcggttcc gctcaatgcc gtcgccggcg cgcccgtcca
      121 tttccagatc accgatctca acggcgcggc caccgagatt ccctccggcc tgccgcaggc
      181 gcgcgccctg ctgctactcg gcttccggca cgatgaccac gccgccctcg acgcctggcg
      241 ggaggggctg ggcctgagca gccgcgacag cgactggttc gaggtgccgg taatcggcgt
      301 cggcaactcg atgatccgcg ccgtgatcgt gcgcggcatg agaagcggcg tcatcggcgc
      361 ggccgatcgg gcgcggttcg ccccggcttt cggcgacgcc gccgccatcg cggagcaatt
      421 gggggtcgat ccctcggcgc ctgcggcggt tgtcgtcgac cggaccggcc acgtcctggc
      481 ctatgccagc ggcgccttcg atccgaccaa ggccgcggcc ctgatccacg tccttcgtcc
      541 ctagccccag ccctccgggt cgtgcctcgg catgattgag gcggcgttcg gatggtgtcg
      601 tctcaggagc cgggtggcga tcagaaacca aggattccga tgcatttctg ttcaagatta
      661 ttgttggcct cggccctgct cctcgcagtg ggggcgcccg ccccgcaggc tctggcctct
      721 gacaacccgg cgatggacgc gtctgtcgcc cgggtcgaac acgagtggga gcggatcaag
      781 taccagacca gcgacccgcg cgcgcagcat gctcaaattg aaattctggc gcgtgacgcc
      841 gccgcggtca cggcccgcta cccaggacgg gcggagccgc tcatctggca agggatcgcc
      901 gagagtgagc acgctgcgat gtcgagcggc ttcagcgcgc tttccgacgc caaggcgtcg
      961 cgccgaacct ttgagatggc ctatcagctt gaccggacgg ccctggaggc cggcgcggcg
     1021 accagccttg ggaccctgta ttatcgcgtg ccaggcttcc caatcggatt tggtgacaag
     1081 gccaaggcgc gtcactacct cgccgaggcg gtgacgattg ctccagacgg catggacgcc
     1141 aactatttct atggcgactt cctgatcacc cagggcgagt acgccgccgc cggcaaggtc
     1201 ctccagcacg ctctggcctc gccgccgcat ccggaccggc cgatctggga ctcaggccgc
     1261 cgcgcggaga tccgggcgct gcttgcgaag gtgaacgcaa agctccggag ttcgtgatcg
     1321 ggaaaggccg cgcggcgccc gtttccggcg gacttgccgg ccaactgcga aacccgcacg
     1381 gcgcagcagg gcgcctggcg ggagccgcca tgcgcctggt caatcgccaa cccaactttc
     1441 tcgccattca tgcgctcgac gttcgaggcg ctcatgacgt gctggagttg ggtttcggtc
     1501 ccggcgaggg catccgagcg cttgcgcgcc tatcaccggc ggggaggatc tacggcgttg
     1561 accagtcctc caccatgctg gcccaggcct cggcgcgaaa tcgcgccgcg atcctcgacg
     1621 gccacgtcca actgtcatgt gaacagtttg acgagacagg actgccggat cagtccgtcg
     1681 acaggattct cgccgtcaac gtggcctatt tctggtcgga tggtccggcg gttctggccg
     1741 agctagaccg ggtgttgcgc cccggcggcc ggatcagcat ctacgtcaca gacgcctcga
     1801 ctatgtcgaa ctggaagttc acggcgtcgg gacatcatcg cgtcttcagc gcgcctcagc
     1861 ttacacgtct gttggctgat gggccgttcg aagagtcgcg g
//
LOCUS       DATAJL010000738         3252 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108567,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000738 DATAJL010000000
VERSION     DATAJL010000738.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3252
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108567"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(136..2763)
                     /gene="ileS"
                     /locus_tag="VHN39_14105"
                     /pseudo
     CDS             complement(136..2763)
                     /gene="ileS"
                     /locus_tag="VHN39_14105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918587.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
BASE COUNT          507 a         1053 c         1141 g          551 t
ORIGIN      
        1 ctactgcgac cagccggatt cggtgcgccg ccgcgccgcg cgcacggtga tgcaggcagt
       61 gttcgaacgg ctgaccgcct ggctcgcgcc gcttatcccc ttcaccatgg aagaagcctg
      121 gaccacccgc tatccgggcg cggcttccat ggggccgccc aggcgttttg cgcggcgttc
      181 gatctccagg gcgccggtga cgacagaggt caccgcttgc accttcgccc aacgcgcggc
      241 ctcggcgtcg ttgcgccatt cggcgggcgt gtcggggatg gtgcgaaggc agttggacgt
      301 ggcgtccgga tagcgggtcg cccaggcctc ttccatggtg aaggggatga gcggcgagag
      361 ccaggcggtc aggcgctcga acaccgcctg catcaccgtg cgaactgcgc ggcggcgcag
      421 ggaatcgggc cggtcgcagt agaggacgtc tcgacggatg tcgaagaaca gcgacgagag
      481 ctcgtcctgg cagaattcgg tcagcggccg gataacgtcc tggaagagat agccctcgta
      541 ggccgcgcga acctgcccat cgagcgcctg cagccggtgc aggatgaacc gctccagcgg
      601 cggcatgtcg gccagctcca ccgcctcgtc cggctgataa tcggccagag cccccagcag
      661 gtagcgcacg gtgttgcgga gcttccgata ggcgtcggag gtggtctgca gcacggtttt
      721 gccgatccgg ctgtcgtccg aatagtcgat catcgccgcc cacagccgga tgatttctgc
      781 gccggattcg cggatcacga cctcggggtc gaccacattg cccttggatt tcgacatttt
      841 ctcgccggcc tcatccatgg tgaagccgtg ggtcaggatg gcgtcgtagg gcgcgcggcc
      901 ccgcgtgccg gagctttcca gcagggagga ttggaaccag ccgcggtgct ggtcggagcc
      961 ctccagatag agatcggccg gccagtgggt gtgggcgcgg ttttccagag tgaaggcgtg
     1021 ggtcgagccg gaatcgaacc agacgtcgag gatgtcctcg accttttcga agcgttcggg
     1081 gtcgtgggcg cccaggaaat ccgacatcgg ccgggtgaac caggcatcgg cgccttcggc
     1141 ccggatcagt tcgacgatgc gcgcgttgac ggcggcgtcg tgcaacggct ggccggtttc
     1201 tacatccacg aacatggcga gcggcgagcc ccaggcgcgc tggcggctga tcagccagtc
     1261 cgggcggctc tcgaccatgg cgcggatgcg gttgcggccg gcggcgggat agaaggccgt
     1321 ggcgtcgatg gcctccagcg cggtctcgcg cagggtgcgg cccgcgtggg cggcgtcctc
     1381 cagcggctcg tccatgcgga tgaaccactg cggcgtgttg cggaagatca ccggcgcctt
     1441 ggagcgccac gagtgcggat aggagtgctc cacccgcccg cgggccagga ggttcccggc
     1501 ctcgatcagc ctgtccatca ccgctgcgtt ggccgggccg aacttgccgg acttcttgcc
     1561 ctcggtctcc agcaccttga ggccggcgaa gagcggcacg gtcgggtagt aggcgccgtc
     1621 cggatcgacc gtgtcgggga tctcgcgatg gccgtgagcg atccagacca tgtagtcgtc
     1681 ggcgccgtgg ccgggcgcgg tgtggacgaa gccggtgccg gcgtcctcgg tcacgtggtc
     1741 gccggccagc atcggcaccg gatatccgta gcctgagtcc agcgccgcca gcgggtgggc
     1801 cagcaccatg ccctggcagt cgacggtctc gaccttgtgg aatctggcga ccttggcggc
     1861 ggccatcacc tccgcggcca gcttttcggc gaggatcagc cggtcgccgg cctcggccca
     1921 gggctcgaac ggcaggtccg tctccatcgc atcgacgacg tagaccgcgt aggcgatgtc
     1981 gggattgtag ctgacggcgc gattggccgg gatggtccag ggcgtggtgg tccagatcac
     2041 caccgaggcg tcgccggtgg cgtccgagcc ttcgaccacc ggaaacctca cccagacggt
     2101 gggcgagacg tggtcgtgat actcgacctc ggcgtcggcc agcgccgtgc gctcgaccgg
     2161 gctccacatc accggcttgg agccgcggta gagctggccg gacatcacga acttatggaa
     2221 ctcggcgacg atcgcggcct ccgagccata gtccatggtg gcgtagcggt gctcccagtc
     2281 gccgatcacg cccaggcgct tgaagccggc catctgaacg ccgatccact tctcggcata
     2341 gtcgcgacag cgggtgcgga actcggcctt ggagacctcg tccttgcgcc ggcccgcggc
     2401 ccgcagctcc tcctcgatct tccactcgat cggcaggccg tggcagtccc agccgggcac
     2461 atagtcgacg tcgtagccca gcaggaaccg cgagcggacc acgaagtcct tcagggtctt
     2521 ctgcagcgcg tggccgatat ggatggcgcc attggcgtag ggcgggccgt cgtgcagcac
     2581 gaagagcggc gcccccgcgt gctgccgggc cttcctcatg gcgttgtaga gatcagcctc
     2641 agcccactgc gccaggatca ccggctcctt ctgcggcagg cctgcgcgca tggggaaggg
     2701 cgtgtcgggg aggaagacgg tttcgcgata gtcgcgcgaa ggatgctcgg cgtcgtcggc
     2761 cattactctg tccaataggt ccgggttttt cgaggtgcgg ggcaaacccg gcgcgcgcag
     2821 acggtctcgt ccagcgtcac gccgggcgga taattcgcga gctcgtccga accgaagtca
     2881 tgggcgaggc tctaacagac cggggccgcg aacccaagag gcggggcagg ccggattttg
     2941 tccgggcgat gggttgagtt gtccggacgc cgaaggccgg cgccgacttc gacctggggg
     3001 gcctcgccgc gacggcgaag cgttagccat tccccctttg ctcgtcatgg ccgggctcgt
     3061 cccggccatc cgtagactcc gcgggtgaga agatgcgcac aaaaggcgcc gcgccttttc
     3121 ccgacggccc cgcgcgcctg gattcccaaa tgttctcgtt ctgttcttga ctcatgaagc
     3181 gagccgcctc atcattgcgc gcctgtggct cgcttcatga gtcaagaaca gaacgagaac
     3241 atttgggaat cc
//
LOCUS       DATAJL010000739         1568 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69792,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000739 DATAJL010000000
VERSION     DATAJL010000739.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1568
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69792"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..178
                     /locus_tag="VHN39_14110"
     CDS             <1..178
                     /locus_tag="VHN39_14110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817526.1"
                     /translation="LKQARGYLGAAPVMFISGYAESEFSDLLEGEVNVSFLPKPIDIK
                     TLAERVKQELQKAA"
     gene            272..1288
                     /locus_tag="VHN39_14115"
     CDS             272..1288
                     /locus_tag="VHN39_14115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2817527.1"
                     /translation="MTANEVWAMAVAAQHAGRLGEAERLYRALQASVPTSPTALNLGL
                     LLEDQRRWAEAEAVYRDALKVDPNDPEQQRQLAFLLLRLGRYAEGWPYYEARMVKPGH
                     NRKPPLTFPEWRGEPVRSLLIWLEQGLGDQIQYARYVAPLMARGIKVSLMCPPSLKRL
                     LEPLGCDLIVAEGSVQIPKHEAWVLAASIPLRTGTTLETIPPAPYLPGREGGAGIGLL
                     TSGEPSHPDDHNRSMPDKAAAELTGLPGVRSLDRATTGAQDMEDTAEIVRGLEKVITV
                     DTALAHLAGAMGKPCWLLLPYKGDWRWLTGRTDSPWYPSIRIFRQPAPGDWASVVAEV
                     RGAL"
     gene            1285..>1568
                     /locus_tag="VHN39_14120"
     CDS             1285..>1568
                     /locus_tag="VHN39_14120"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HEX2817528.1"
                     /translation="MTGQVIVGRSAPADWPALAYDDWADTATTLHMWTQIVGKIRMVL
                     TPPVNHWWHVPLYVSARGLTTLPIPVAGRSIEIAFDFLDHELKVSCSDGHR"
BASE COUNT          260 a          553 c          525 g          230 t
ORIGIN      
        1 cttgaagcag gcgcgcggct acctgggcgc cgcgccggtg atgttcatct ccggctatgc
       61 ggagagcgag ttctccgacc tgctggaagg cgaggtcaat gtctccttcc tgcccaagcc
      121 catcgacatc aagaccctgg ccgagcgggt gaagcaggaa ctccagaagg cggcctgagc
      181 ttgcctttgg agccagcggc cgccaaacat ccggcgacca gcacaagcca gccgaaagcc
      241 cgccgtgacg caaacgccgc cccccaagac aatgaccgcc aacgaggtct gggccatggc
      301 tgtggcggcc cagcatgcgg ggcgccttgg cgaagccgag cggctctatc gcgcgctgca
      361 ggcctcggtg ccgacctcgc cgactgcgct gaacctcggg ctcctgctgg aggaccagcg
      421 gcgctgggct gaggccgagg cggtctatcg cgacgcgctg aaggtcgatc ccaacgatcc
      481 ggagcagcaa cgccaactgg cgttcctgct gctgcgcctg ggccgctacg ccgagggctg
      541 gccctattac gaggcgcgga tggtcaaacc cggtcacaac cgcaaaccgc cgctgacgtt
      601 cccggaatgg cggggcgagc cggtgcgctc gctcctgatc tggctcgaac agggcctcgg
      661 cgatcagatc cagtacgcgc gctatgtcgc gccgctcatg gcgcgcggca tcaaagtcag
      721 cctgatgtgc ccgccctcgc tcaagcggct gctggagccc ctgggctgcg acctgatcgt
      781 cgccgagggg tcggttcaga ttcccaagca cgaggcctgg gtgctcgcgg cctcgattcc
      841 gctcaggaca ggcacgacgc tggagaccat cccgccggcg ccctacctgc ccgggcgcga
      901 gggcggcgcc ggcatcggcc tgctcaccag cggcgagccg agccatccgg acgaccacaa
      961 ccgctcgatg cccgataagg cggcggcgga actgacggga ctgccgggcg tccgatccct
     1021 cgaccgggcc acgaccggcg cacaggacat ggaggacacc gctgagattg tccggggcct
     1081 ggaaaaggtg atcaccgtcg acaccgcact cgcccacctg gccggcgcga tgggcaagcc
     1141 ctgctggctg ctgctgcctt acaagggcga ctggcgctgg ctgaccgggc gcaccgacag
     1201 cccctggtat ccctcgatcc gcatcttccg ccagccggct cccggcgact gggcgagcgt
     1261 ggtcgccgag gttcgcgggg cgctgtgacc gggcaagtca tcgtaggtcg gagcgcgcca
     1321 gctgattggc ccgcgctcgc ctatgacgac tgggccgata cggcgaccac cctgcacatg
     1381 tggacccaga tcgtcggtaa gatccgcatg gtcctgaccc cgccggtgaa ccactggtgg
     1441 cacgtgccgc tctatgtgag cgcccgaggg ctcaccacct tgccgatccc ggtggccggg
     1501 cgctcgatcg agatcgcctt cgacttcctg gatcacgagc tgaaggtcag ctgcagcgac
     1561 ggccaccg
//
LOCUS       DATAJL010000740         4642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108622,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000740 DATAJL010000000
VERSION     DATAJL010000740.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4642
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108622"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..474
                     /locus_tag="VHN39_14125"
     CDS             <1..474
                     /locus_tag="VHN39_14125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817529.1"
                     /translation="VLESSPGLEVVEIGCPALHETLADHDMDLPTAVLAPDRDFGGQH
                     FLRHVAAETPWTAHGATGFERRETGMAQATAGLADARVIRPASARAFTAPPHTGELLF
                     GFLLEGSAILDHAGAHPLGPADAFVIPAGEAWGLSDASADLALLEVMLPADASRA"
     gene            complement(464..1819)
                     /locus_tag="VHN39_14130"
     CDS             complement(464..1819)
                     /locus_tag="VHN39_14130"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2817530.1"
                     /translation="MRRLALLVACATTLAMAPGIALAEAWAIEHVTLIDGTGHAPQAD
                     MTVTVDGDRIIAVTPSALTKTPKGKVIDGRGRYLMPGLMDVHIHLHGGAGPQPDLAST
                     RAAATQALASFLYSGVTTVYDAGNQADVILPLRADERAGRIASPRIFATGNLITYPGS
                     HGSGMAVTIQDFEKDKDKLDKHIAEQQPDVVKLTLEEEGWGARPMIPLMPEPLLQDII
                     KYYNLHGIRSTIHVSSELRSEEAIYAGADSLAHPVIQGPVSDSFVKLMAAKKTPFAST
                     LTIGENYSRLAEHPEFLDQPLYVASFSPADRATMKTKTRAEYQARMWTAWMKLMTPVA
                     EENIRKVHAAGGVVAMGTDQSSGPASQRELELLVQAGIKPFDVLTIATHNGAVLLGKA
                     DSLGSVEPGKLADLLMLNADPTADIENVKKIAFVMKGGQIIDESKLPMAGGPQKRRFT
                     P"
     gene            complement(1893..3038)
                     /locus_tag="VHN39_14135"
     CDS             complement(1893..3038)
                     /locus_tag="VHN39_14135"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX2817531.1"
                     /translation="MTADWDAFRADFPTLRDKAYLASGSYGLLSRQVETAFRQYMDDR
                     IEKGADWGGWVSKADAVRDGMASLLNAGPDEIAVTTSASAGVNSLASALDFSGPRNKV
                     VVSNFEFPTGAQIWHAQEPRGAVVEHVPEGPDGGIPLEHFERAIDERTKIVQVTHVCY
                     RNGQRLDVEAVTRIAHAKGALVLLDCFQSVGAMAIDVKALDVDFAVGGMLKYLLGTAG
                     VGFLYVHRRRLAELVPTVSGWFAQADTDAMDIFANDPAPTAARFQTGTPPVVNCYAAE
                     AGIGLIRGIGIGDIEARIRDLTGDAMDRLADAGCKLATPREDRRRGPQVAIRSRDAAA
                     LTARLAERGVIVSWRDGNVRAMFHAYNDASDVGALIEGLMANRELLA"
     gene            3106..4491
                     /locus_tag="VHN39_14140"
     CDS             3106..4491
                     /locus_tag="VHN39_14140"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015171 - amino acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX2817532.1"
                     /translation="MDEDAIIEREAGLSKGLTKAQITMMGLGGAIGTGLFMGSGIAIG
                     YAGPAVMISYAIAAFIAVAMVFSLSEMAVMHPAAGSFGVYAETYLNPWAGFTVRYTYW
                     FCQVVAIGGEAVAAGTYMGFWFPGVPVWVWSLGFAAAIVYLNSRAVKNFGTVEYWLAL
                     IKVTAIIGFIILGGAALFGVAQPAVGFHNLTGLPGGFMPHGLRGVWMGVIIGIFSFIG
                     VELIAVTAAETADPKTAIPAALRSMAFRLGLFYLLALTIVVSFIPWTEVGAKVVAQSP
                     FVRVFAHTGVPYAAGIMNFVVLTAALSSMNANTYLTGRMLFSLARGDYAPRVFGRLSR
                     TLAPTPALLASAVAILGAAALSRFTPLAYNYLFGISLFGAIFVWIVILLSHLAFRRRH
                     KPQELPLRMPFFPVLQIAGLILLGAILITMGLDTDFWNISWIVGVPWLALLSAAYFLW
                     KRRREASPISP"
BASE COUNT          629 a         1594 c         1584 g          835 t
ORIGIN      
        1 gtgctggaaa gttcgccagg ccttgaggtg gtcgaaatcg gctgcccggc cctacacgag
       61 accctggccg accacgacat ggacctgccg accgcagtcc tcgcgcccga ccgcgacttc
      121 ggcggccagc acttcctgcg ccacgtggcg gctgagacac cttggaccgc gcacggagcg
      181 accggcttcg agcgccgcga gaccggcatg gcccaggcga ccgccggcct cgccgacgcc
      241 cgggtgatcc gtccggcaag cgcgcgcgcg ttcactgcgc caccgcacac tggcgaactc
      301 ctcttcggct tcctgctgga gggctccgcc atcctggacc acgccggcgc ccacccgctc
      361 ggccccgccg acgccttcgt catcccggcc ggcgaggctt ggggcctcag cgacgcctcc
      421 gccgacctcg cactgctcga agtgatgctg ccggccgacg cttctagggc gtgaagcgcc
      481 gcttctgcgg gccgccggcc atgggcaact tcgattcgtc gatgatctgg ccgcccttca
      541 tgacgaaggc gatcttcttg acgttctcga tgtccgccgt cgggtcggcg ttgagcatca
      601 gcaagtcggc gagcttgccg ggctccacgg agccgaggct gtcggccttg cccagcagca
      661 ccgcgccgtt gtgggtggcg atggtcagga cgtcgaaggg cttgatcccg gcctggacca
      721 gcagctccag ctcccgctgt gaggcgggcc cgctcgactg gtccgtgccc atggccacga
      781 ccccgccggc cgcgtggacc ttgcggatgt tctcctcggc gaccggggtc atcagcttca
      841 tccaggcggt ccacatgcgg gcctggtact ccgcgcgggt cttggtcttc atcgtggcgc
      901 ggtcggcggg gctgaagctc gccacataga gcggctggtc gaggaattcg gggtgttcgg
      961 ccaggcggct gtagttctcc ccgatggtca gcgtcgaggc gaagggcgtc ttcttggcgg
     1021 ccatcagctt cacgaagctg tcgctcaccg ggccctggat caccgggtgc gccaggctgt
     1081 cggcgccggc gtagatcgcc tcctccgagc gcagttcgct ggagacgtgg atcgtcgaac
     1141 gtatgccgtg caggttgtag tacttgatga tgtcctgcag cagcggctcg ggcatcagcg
     1201 ggatcatcgg ccgcgcgccc cagccttcct cctccagggt gagcttgacc acgtcgggct
     1261 gctgctcggc gatgtgcttg tcgagcttgt ccttgtcctt ctcgaagtcc tggatggtga
     1321 cggccatgcc cgagccgtgg ctgcccggat aggtgatcag gttgccggtg gcgaagatgc
     1381 gcggcgacgc gattctgccg gcccgctcgt cggcgcgcag cggcaggatg acgtcggcct
     1441 gattgccggc gtcatagacc gtggtcaccc cggaatagag gaagctcgcc agcgcctggg
     1501 tggcggccgc gcgagtcgag gccaggtcgg gttgcggtcc tgcgccgccg tgcaggtgga
     1561 tgtgcacgtc catcagcccg ggcatcagat acctgccgcg cccatcgatc accttgccct
     1621 tcggcgtctt ggtgagcgcg ctgggggtca ccgcgatgat ccgatcgccg tccacggtca
     1681 ccgtcatgtc ggcctgcggg gcgtggcccg tgccgtcaat cagggtgaca tgctcgatgg
     1741 cccaggcctc ggccagggcg ataccaggcg ccatcgccag ggtcgtcgcg caggccacca
     1801 gaagcgccag tcgtctcatc gtggaattcc cgttgaactc gcggccgcgt cgcgcgccat
     1861 ccccgttgcg cagcttgccg gttcgcggcg gctcaggcca gcagttcccg gttggccatc
     1921 aggccttcga tcagggcgcc cacgtcggag gcgtcgttgt aggcgtggaa catcgcccgc
     1981 acgttgccgt cccgccacga gacgatcacc ccgcgctcgg cgagccgggc ggtcagcgcc
     2041 gcggcgtcgc gggaccggat ggctacctgg ggtccgcgcc tgcgatcctc acgcggcgtg
     2101 gccagcttgc agccggcgtc ggcgaggcgg tccatggcgt ctccggtcag gtcgcggatg
     2161 cgggcctcga tgtcgccgat gccgattccg cggatcaggc cgatgccggc ctcggcggca
     2221 tagcagttga ccaccggcgg ggtgccggtc tggaagcgcg cggcggtggg agccgggtcg
     2281 ttggcgaaga tgtccatggc gtcggtgtcg gcctgggcga accagcccga gaccgtcggg
     2341 accagctcgg ccaggcgccg ccggtgcaca tagagaaagc cgacgccggc cgtgccaagc
     2401 aggtacttca acattccccc gacagcgaaa tcgacgtcca gggccttcac atcgatggcc
     2461 atcgcgccga cggactggaa gcagtccagc agcaccagcg cgcccttggc gtgagcgatc
     2521 cgggtgaccg cctccacatc gagccgctgt ccgttgcggt aacagacgtg ggtcacctgg
     2581 acgatcttgg tgcgctcgtc gatggcgcgc tcgaaatgct ccagcgggat gccgccgtcc
     2641 ggcccctcgg gcacatgctc gacgactgcg ccgcgcggtt cctgcgcgtg ccagatctgc
     2701 gcgcccgtcg ggaattcgaa gttcgagacc acgaccttgt tgcgcgggcc ggagaaatcg
     2761 agggcgctcg ccagcgaatt gacccccgcc gaggctgagg tggtcacggc gatctcgtcg
     2821 gggccggcgt tcagcaggct cgccatcccg tcgcgcaccg catcggcctt gctgacccag
     2881 ccgccccagt cggcgccctt ctcgatgcgg tcgtccatgt actgccggaa cgccgtctcc
     2941 acctgccgcg acaacaggcc gtaggagccg ctggccaggt aggccttgtc cctgagcgtc
     3001 gggaaatcgg cccggaatgc gtcccagtca gcggtcacgc cgaaccgccc ttgtgcgcgc
     3061 ccggaaaact tcgttcatga gctggatttc caagcggggg cgcgggtgga cgaagacgca
     3121 atcatcgagc gcgaggccgg gttgagcaag gggctcacca aggcccagat cacgatgatg
     3181 ggcttgggcg gagcgatcgg caccggcctg ttcatggggt ccggcatcgc cattggctat
     3241 gcgggtccgg cggtgatgat cagctacgcc attgccgcct tcatcgcggt ggccatggtc
     3301 ttcagcctgt cggagatggc ggtgatgcac ccggccgccg gctccttcgg ggtctacgcc
     3361 gagacctacc tcaatccctg ggcgggattc accgtgcgct acacctactg gttctgccag
     3421 gtggtcgcca tcggcgggga ggcggtcgcg gcggggacct acatgggctt ctggttcccc
     3481 ggcgttccgg tctgggtctg gtcgctgggc ttcgccgcgg cgatcgtcta cctcaattcc
     3541 cgggcggtga agaatttcgg gacggtcgag tactggttgg ccctgatcaa ggtcaccgcc
     3601 atcatcggct tcatcatcct gggcggggcg gcgctgttcg gcgtggctca accggcggtg
     3661 ggcttccaca acctgacggg cctgcccggg ggcttcatgc cgcacgggct gaggggcgtc
     3721 tggatgggtg tgatcatcgg cattttctcg ttcatcggag tcgaactgat cgccgtgacc
     3781 gccgcggaga ccgccgatcc gaagaccgcc attccggccg cattgcgctc catggccttc
     3841 cggctggggc tcttctacct cctggccctg accatcgtgg tgagcttcat cccctggacc
     3901 gaggtgggcg ccaaggtggt ggcgcagagc cccttcgtcc gcgtcttcgc ccacaccggc
     3961 gtgccctatg ccgcgggcat catgaacttc gtggtcctga ccgccgcgct ctccagcatg
     4021 aacgccaaca cctacctgac cggccggatg ctgttctcgc tggcgcgcgg cgactatgcg
     4081 cccagggtgt tcggccggct gagccggacc cttgcgccga cgccggcgct gctcgcctcc
     4141 gctgtggcga tcctgggcgc ggcggccctc tcgcgcttca cgccgctcgc gtacaactac
     4201 ctcttcggca tttcgctctt cggggcgata ttcgtgtgga tcgtgatcct gctcagccat
     4261 ctggcgttcc gccgccggca caagccgcag gagctgccgc tgcgcatgcc ttttttcccc
     4321 gtgttgcaga tcgccggcct gatcctgctg ggcgcgatcc tgatcaccat ggggctcgac
     4381 accgacttct ggaacatctc ctggatcgtc ggcgtgccgt ggctggcgct gttgtcggcg
     4441 gcctacttcc tctggaagcg gcgacgcgag gcttcgccta tttctccgtg aggttccaga
     4501 cgccgtccca gtcggcggcg gggggcgtct tcttgagcag cttgcagcgc tcccgataga
     4561 ccgacgccgg gccgtcgttc ggatagagct caagcacccc gtcgaaggcg cggcccgcgg
     4621 cggcccagtc gcggtcgcgg ta
//
LOCUS       DATAJL010000741         2063 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108635,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000741 DATAJL010000000
VERSION     DATAJL010000741.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108635"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            99..1364
                     /locus_tag="VHN39_14145"
     CDS             99..1364
                     /locus_tag="VHN39_14145"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2817533.1"
                     /translation="MRRIARLAALALAAIPMTLGAQEAPPPGPSPAPANASGQVALGH
                     HLAVIGDCEGCHNRPGGQPYAGGVPLPTPFGTIYSANITQDRETGIGAWSADNFWNAM
                     HNGVRPNGAKLYPAFPYVYFTHVTRTESDAIFAYLKTVTPVSYRPPANKLPFPLNIRF
                     MVGFWNALYFKPDKAATAGPIPGQHIVEGLGHCGGCHTPKTFLGGDKTGHELEGGKID
                     NWFAPALTADNRTGLGAWSTPDVAQYLKTGRNARANGSASMADIIHFSTSQMDDADLA
                     AVGDYLRGHPSHALPAATPRLDPRVMAAGEAIYVDECAACHAVDGKAAPTYFPPLPGA
                     AVTQSADPTTVIRFILAGTQTVATDARPTPLSMPSYGWKLDDAQVAAVATYVRNSWGN
                     AAPVVSASEVASLRRKVAAKPIQKPSAAI"
     gene            1468..>2063
                     /locus_tag="VHN39_14150"
     CDS             1468..>2063
                     /locus_tag="VHN39_14150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516349.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HEX2817534.1"
                     /translation="MKQFLITAAGVFAGLLIFMIGVPFVLISMLASAAGPAPLPSRSV
                     LELDLRDQLTDQSPQNALAGFARRGHSAMSIVEGLRRAEQDDRIKAVLVRLPEGGIEP
                     GLADELHLAIKHFRTSGKPVIAHSQGLYPSGFVTATYMMGTAADELWMQPGASFQVTG
                     LANEDLFFKRAFDKYGVKADYEQRYEYKNAVNGYLYDD"
BASE COUNT          340 a          776 c          632 g          315 t
ORIGIN      
        1 ccccaccggc acggtggccg cgctcgtcta ccacgccgcc gacgcgattg tggcccgcta
       61 cctgaaggcc agccaccagc cgctggtcca ggcttgagat gcggcgcatc gcgcgcctgg
      121 cggctctcgc cctcgcggcg atccccatga ccctgggcgc gcaggaggcg ccgccgccgg
      181 ggccttcgcc cgcgccggcc aacgccagcg gacaggtggc gcttggccac cacctggccg
      241 tcatcggcga ctgcgaaggc tgccacaacc gaccgggcgg ccaaccctac gccgggggcg
      301 tgccgctccc caccccgttc gggaccatct attcagccaa catcacccag gaccgcgaaa
      361 ccggcatcgg agcctggagc gcggacaact tctggaacgc catgcacaac ggtgtccgtc
      421 ccaacggcgc caagctttat ccggccttcc cgtacgtcta tttcacccac gtcacgcgga
      481 cggagtccga cgccatcttc gcctatctga agaccgtcac gccggtcagc taccggccgc
      541 ccgccaacaa gttgccgttc ccgctcaaca tccgcttcat ggtgggcttc tggaacgcgc
      601 tctacttcaa gcccgacaag gcggcgaccg ccggtcccat ccccggccag cacatcgtcg
      661 agggcctcgg tcattgcggt ggctgtcaca cgcccaaaac cttcctgggc ggcgacaaga
      721 ccggccacga gctggagggc ggcaagatcg acaactggtt cgcgcctgcg ctcaccgccg
      781 acaaccgcac gggcctgggg gcctggtcga ccccggatgt ggcccagtac ctcaagaccg
      841 gccgcaacgc ccgcgccaac ggctcggctt ccatggccga catcatccac ttctcgacct
      901 cgcaaatgga cgacgcggac ctcgccgccg tcggcgacta cctgagggga catccgagcc
      961 acgccctgcc cgccgccacg cccaggcttg acccaagggt gatggccgct ggcgaggcga
     1021 tctatgtcga cgaatgcgcc gcctgccacg ccgtcgacgg caaggccgcg cccacctact
     1081 tcccgccgct gccgggcgcg gcggtgaccc agtccgccga tcccacgacg gtcatccgtt
     1141 tcattctggc ggggacccag acggtcgcca ccgacgcgcg gccgacaccg ctctccatgc
     1201 cgagctacgg ctggaagctg gatgacgccc aggtcgccgc ggtggccacc tacgtccgca
     1261 acagctgggg caacgccgca ccggtggtca gcgcctccga ggtcgcgagc cttcggcgaa
     1321 aggtcgcggc aaagccaatc cagaagccgt ccgccgccat ttaggcgccc cgcgggacgc
     1381 cggcctttcc gccattgaaa tagtgtgcga gacgcgacgt cttggctcta agctttgatc
     1441 gtctttcgca ggcgcatcgg ttcccagatg aagcagttcc tgatcaccgc cgccggggtc
     1501 ttcgcgggcc tgctgatctt catgatcggc gtgcccttcg tgctgatctc catgctggcc
     1561 agcgccgctg ggccggcgcc cttgccgtcg cggagcgtgc tggagcttga cctgcgcgat
     1621 cagctcaccg accagtcgcc gcagaacgcg ctggccggct tcgcgcggcg cggccactcg
     1681 gccatgtcga tcgtcgaagg cctgcgccgc gccgagcagg acgaccggat caaggcggtc
     1741 ctggtgcgcc tgcccgaagg cggcatcgag cccggccttg ccgacgaatt gcacttggcg
     1801 atcaagcact tccggacctc gggcaagccg gtcatcgccc atagccaggg gctttatccc
     1861 tcgggcttcg tgaccgccac ctacatgatg gggaccgccg ccgacgagct ctggatgcaa
     1921 cccggcgcct ccttccaggt gacggggctc gccaatgagg acctgttctt caagcgggcc
     1981 ttcgacaaat acggcgtcaa ggccgactac gagcagcgct acgagtacaa gaacgcggtc
     2041 aacggctacc tctatgacga ctt
//
LOCUS       DATAJL010000742         9777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69901,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000742 DATAJL010000000
VERSION     DATAJL010000742.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9777
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69901"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2258
                     /locus_tag="VHN39_14155"
     CDS             <1..2258
                     /locus_tag="VHN39_14155"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2817535.1"
                     /translation="VADGFRPLGYAIWRMGGEDQLDWQVLRHEYGQGKPDGLEMLKPG
                     ANVDLTDGKGEILHVDAIPTPGRRSLEIDSDTGLISGENYEVMPTSYGVQRYGFHPGW
                     VAITFDDGPDGRWTPKILDILKEKNAKATFFVIGKNMSAKPGLVAREVREGHNVGNHT
                     WTHPDLSKVSAAQAAVELSATQRLFETITGRSMRLFRAPYYGDAEPDTPSEVARLLIG
                     QEQGYLSVGLRIDPDDWDHPDATTHARIINTALTRLKDTERPGQVILLHDSGGDRSRT
                     VETLPYLIDTLRAHGYKIVTIGDLAGMTPAEVLPPTSRNSFELLLDRVGFGFFHGMQI
                     ALQTLFITAIVLGVGRLLILGVLALVHRFTIVGRTPPMPDPVTGPLISVLIPCFNEEK
                     VIESSVRRILASNWSRLEVLVLDDGSSDHTAEVVRKAFADEPRVTLMAFENGGKARAL
                     NRGLAKARGDVVVALDADTLFPSDTLAKLARWFGDPRVGAVAGNALVGNRRNLITRWQ
                     ALEYVTAQNLERRALAALGAVTVVPGAVGAWRRAALEALGGYPDDTLAEDQDLTIAMQ
                     RAGWRVEFDPEARAYTEAPETVGGLLKQRFRWSFGTLQCIYKHRAALFDIKRPVLGFI
                     ALPQIWLFQILLTAVAPLIDLAVIWSLISAIYGFTNHSTEWSPDDLTRPLFYWAAFIF
                     LDLSAGALGMALERRAPWGDLVWMPVQRFGYRQLMYYVVVKSIDAALHGARVGWGKLE
                     RRASAAFEGAG"
     gene            2368..3573
                     /gene="sucC"
                     /locus_tag="VHN39_14160"
                     /pseudo
     CDS             2368..3573
                     /gene="sucC"
                     /locus_tag="VHN39_14160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515715.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
     gene            3573..4148
                     /locus_tag="VHN39_14165"
     CDS             3573..4148
                     /locus_tag="VHN39_14165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817536.1"
                     /translation="MRTALAFAMALSAVASMAHAEPVFDAFQKLCLETNGARTQALST
                     AEAQGWQAVPQSFLSGFSSKNDATGNVTDVDGRAHSEAGGLTFLVVAHADRIAPKAMV
                     PADLCVVGRAPGDIEALKAAAAGYAAVPGDSALVDEKGVVGFAWRTEKDAHVALAAKD
                     VQDAAAHHNASVLIAGGQGRIATVALAVPAK"
     gene            4159..5037
                     /gene="sucD"
                     /locus_tag="VHN39_14170"
     CDS             4159..5037
                     /gene="sucD"
                     /locus_tag="VHN39_14170"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEX2817537.1"
                     /translation="MSILINKDTRVICQGFTGAQGTFHSEQAIAYGTKMLGGVTPGKG
                     GTTHIGLPVFNTVAEIVRNERVDASAIYVPPAFAADSILEAVDAEIPLIICITEGIPV
                     ADMVKVRRALDGSKSRLIGPNCPGVLTPNECKIGIMPGNIFKKGSVGVVSRSGTLTYE
                     AVFQTTQVGLGQSTAVGIGGDPVKGTEFIAMLDLFLKDPETESIIMIGEIGGSGEEDA
                     AEFIKNSPTKKPMVGFIAGRTAPPGRRMGHAGAIISGGKGGADDKIAAMEAAGIRVSP
                     SPAALGTTLLEVLKGA"
     gene            5123..8089
                     /locus_tag="VHN39_14175"
     CDS             5123..8089
                     /locus_tag="VHN39_14175"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004591 - oxoglutarate dehydrogenase
                     (succinyl-transferring) activity [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HEX2817538.1"
                     /translation="MADDAGLINEVLAETSFLYGGNAAFVEDLYAKWSADPNSVEPSW
                     RAFFASLHDSAADVQRAAAEPSWIQRAAPSARPDWLSAIDGLWPAVEAKLGARIAERA
                     APAEPAAVSSDAVRAATLDSLRAIMMIRAYRMRGHLNARLDPLGIATTPGDASELDPA
                     TYGFSEADFDRTIFLDFVLGLETATIREILAILRRTYCGNVGVQYMHISDPKEKGWLQ
                     ARIEGRDKEIVFTKEGKVAILKKLIETEGFEKFLHRRFPGTKRFGLDGGESLVPALEQ
                     IIKRGGALGVKDIIIGMPHRGRLNVLAAVMGKPYQVIFHEFQGGSSLPSDVEGSGDVK
                     YHLGASSDRAFDGNSVHLSLTANPSHLEIVNPVVIGKARAKQAFELRTNATAGRGHVL
                     PLLMHGDAAFAGQGVVAECFALSQLRGYGVGGSVHFIVNNQIGFTTSPKNSRSSPYPS
                     DVALMVEAPIFHANGDDPEAVVFATKVAIEYRQQFGKDVVVDMFCYRRFGHNEGDDPT
                     MTQPLMYAKIKDHPTVRDLYAARLVGEGTATQAEVDGWIAEFDKFLDAEFDSGKSYHA
                     DKADWLDGKWSGLKLPGSEESGVTGVPMQKLLDLGHKITAIPERIAVHKTVERVIAGR
                     REAIEKGEGLDWSTGESLAFATLLDQGYPVRLSGQDSIRGTFTQRHSGIVDQTTEETY
                     FPLRNLGPQQAHFEALNSALSEEAVLGFEYGFSLTDPNTLDMWEAQFGDFTNGAQVVI
                     DQFISSGERKWLRMSGLVLLLPHGYEGQGPEHSSARLERFLQMCAEDNLQVVNPTTPA
                     NYFHVLRRQMIREFRKPLIVMTPKSLLRNKRAVSNLSDLAEGTSFHRVMVDGAEAGAD
                     VGGVVLQPDDKITRVIVCSGKVYFDLIEQRAKTGRDDVYVLRLEQFYPWPLKSISGAL
                     ARFKNAELVWCQEEPKNMGGWTFVDPWLELTLDRMKVKAKRARYVGRPASASTAAGLM
                     TRHLRELEAFLTEAFA"
     gene            8129..9361
                     /gene="odhB"
                     /locus_tag="VHN39_14180"
     CDS             8129..9361
                     /gene="odhB"
                     /locus_tag="VHN39_14180"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045252 - oxoglutarate dehydrogenase
                     complex [Evidence IEA];
                     GO_function: GO:0004149 - dihydrolipoyllysine-residue
                     succinyltransferase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HEX2817539.1"
                     /translation="MADIMTPALGESVTEATVARWAKKAGDAVRKDEILVELETDKVS
                     LEVASPSDGVLSEIAFEEGATVEPGAVLGKITEGAAAPKAAAPAKAPEPAKAPEPAKA
                     AAPAAAPAPAPVKAAAEAVLAPSAQRVVAENKLDASAIPGTGKDGRITKGDALAALDA
                     RAKAPAAPTAPAAPREIHEREERVRMTRLRQTIARRLKEAQNNAAMLTTFNEVDMTAV
                     MAMRATYKDAFEKTHGVKLGFMSFFVRAVTHALKMVPDVNAEIDGTDLIYKNHYDIGV
                     AVGTEKGLVVPVVRDADAMSLADIEKAIGALGKKARDGQLAIEDMQGGTFTISNGGVY
                     GSLMSTPILNAPQSGILGMHKIQERPMAIGGQVVIRPMMYLALSYDHRVVDGQGAVTF
                     LVHVKEAIEEPQRLLLDL"
     gene            9429..>9777
                     /locus_tag="VHN39_14185"
     CDS             9429..>9777
                     /locus_tag="VHN39_14185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515721.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2817540.1"
                     /translation="MAQYDVVIIGGGPGGYNAAIRAGQLGLKVACVDKGVDGGGTLGG
                     TCLNVGCMPSKALLHASEMYDAAANHFGELGIDVKPKLNLTQMMAQKATSVAQLTKGI
                     EFLFKKNKVDWIKG"
BASE COUNT         1713 a         3371 c         3202 g         1491 t
ORIGIN      
        1 aggtggccga cggctttcgc cccctcggct acgccatctg gcggatgggc ggggaggacc
       61 agctcgactg gcaagtgctg cgccacgagt acggtcaggg caagccggac gggctggaga
      121 tgctgaagcc cggcgccaat gtcgacctca ccgacggcaa gggcgagatc ctgcacgtgg
      181 atgcgatccc gacgcccggc cgccgctcgc tggaaatcga ttccgacacc ggcctgatct
      241 cgggcgagaa ctacgaggtg atgccgacct cctacggggt ccagcgctac ggcttccatc
      301 cgggctgggt ggcgatcacc ttcgacgacg ggccggacgg gcgctggacg ccgaagatcc
      361 tcgacatcct caaggaaaag aacgccaagg ccacattctt cgtcatcggc aagaacatgt
      421 ccgccaagcc cggcctggtg gcgcgcgagg tgcgggaggg ccacaatgtg ggcaaccaca
      481 cctggaccca tccggacctc tccaaggtgt cggccgcaca ggccgcggtg gagctgtcgg
      541 ccacccaacg cctcttcgag accatcaccg gccgttcgat gcgacttttc cgggcgccct
      601 actacggcga cgccgagccc gacacgccga gcgaggtcgc gcgcctgttg atcggtcagg
      661 agcagggcta cctgagcgtc ggcctgcgga tcgaccccga cgactgggac catcccgacg
      721 ccaccaccca tgcgcggatc atcaacaccg cgcttacccg cctgaaggac accgagcggc
      781 ccggccaggt gatcctgctg cacgattccg gcggcgaccg cagccgcacg gtggagacgc
      841 tgccctacct gatcgatacc ctgcgcgccc acggctacaa gatcgtcacc atcggcgacc
      901 tggccggcat gacgcccgcc gaggtgctgc cgcccaccag ccgcaactcc ttcgagctgc
      961 tgctcgaccg ggtgggcttc ggcttcttcc acgggatgca gatcgcgctg cagaccctgt
     1021 tcatcaccgc catcgtgctg ggggtcggcc ggctgctgat cctgggggtc ctggcgctgg
     1081 tccaccgctt cacgatcgtg gggcgcaccc cgcccatgcc cgatccggtc accggcccgc
     1141 tgatcagcgt gctgatcccc tgcttcaacg aggagaaggt gatcgaaagc tcagtgcgtc
     1201 ggatcctggc ctccaactgg tcgcggctgg aggtgctggt gctcgatgac ggatcgagcg
     1261 accacaccgc cgaggtcgtc cgcaaggcct tcgccgacga accgcgcgtg acgctgatgg
     1321 ccttcgagaa cggcggcaag gcgcgcgcgc tgaaccgcgg cctggcaaag gcccgcggcg
     1381 acgtggtggt ggcgctggac gccgacaccc tgttcccatc cgacacgctc gccaaactcg
     1441 cccgctggtt cggcgatccc cgggtgggcg cggtggccgg caatgccctg gtgggcaacc
     1501 gccgcaacct gatcacccgc tggcaggcgc tggagtatgt cacggcccag aacctcgagc
     1561 gccgggcgct ggcggcgctg ggcgcggtga ccgtggtgcc gggcgccgtg ggggcctggc
     1621 gccgcgcggc gctggaggcc ctgggcggct atccggacga cacgctggcc gaagaccagg
     1681 acctgaccat cgccatgcag cgggccggct ggcgggtgga gttcgacccc gaggccaggg
     1741 cctacaccga ggcgccggag accgtgggcg gcctcctgaa gcagcggttc cgctggtcct
     1801 tcggcaccct tcaatgcatc tacaagcacc gcgcggcgct tttcgacatc aagcgcccgg
     1861 tgctgggttt catcgcgctc ccgcagatct ggctgttcca gatcctgctg acggcggtgg
     1921 cgcccttgat cgacctggcg gtgatctgga gcctgatctc ggcgatctat ggcttcacca
     1981 accattcgac ggagtggtcg ccggacgacc tgacgcggcc gctgttctac tgggccgcct
     2041 ttatcttcct ggacctctcg gccggggcgc tgggcatggc gctggagcgt cgcgcgccct
     2101 ggggagacct cgtctggatg ccggtccagc gcttcggcta ccgccagctg atgtactatg
     2161 tggtggtcaa gtcgatcgac gcggccctgc acggcgcacg cgtcggctgg ggcaagctcg
     2221 aacgccgcgc cagcgccgcc tttgaaggcg ccggctagcc agccgccttt tccgccgtcc
     2281 cgcggttgtc ttaagaggga gcggcgccta taaccgcgcc cactcgccgc cccgccgcgg
     2341 cggccgtcaa aagcgcgttc agcgagcctc atgaacatcc acgaacacca agccaaggcc
     2401 gtcctcgccg agttcggcgt gccggtcccc aagggcttcg cggccttcac cgtcgacgag
     2461 gccgtcgagg ccgccaagaa gctggggggt ccggtcttcg tcgtgaagtc gcagattcac
     2521 gccggcgggc gcggcaaggg caagttcgag ggcctcggcc ccgacgccaa gggcggggtc
     2581 cgggtcgtga aatcggtcga agaggtcagg gccaacgccg ccgagatgct gggccgcgtg
     2641 ctggtgaccc accagaccgg tcccaagggc aagcaggtca accgcctcta catcgaggaa
     2701 ggcgccgcca tcgcccgcga gctctatctg tccctgctgg tcgaccgcga gacgagccgg
     2761 gtctccgtcg tcgcctccac cgagggcggc atggacatcg aggaagtggc gcactcgacg
     2821 ccggaaaaga tcatcacctt cggcatcgac ccggtgaccg gcgtgcgcgg cttccacggc
     2881 ctgaagctcg ccgaggcgct ggcgctctcc ggcgaccagg ccaagcaggc cggcaagctg
     2941 atcggccaac tctacgaagc cttcgtcgcc aaggacatgg cgatgctgga agtgaacccg
     3001 ctgatcgtca ccgacgacgg ccagctgcgc gtcctcgacg ccaaggtctc cttcgacgac
     3061 aacgccctgt tccgccaccc ggacatcaag gcgctgcgcg acgagagcga ggaggacccc
     3121 aaggagatcg aggcctccaa atacgacctc tcctacatcg cgctcgacgg cgagatcggc
     3181 tgcatggtca acggtgcggg cctggccatg gccaccatgg acatcatcaa gctctacggc
     3241 gccgagcccg ccaacttcct ggacgtgggc ggcggcgccg acgaggccaa ggtcaccgcg
     3301 gccttcaaga tcatcatctc cggccccaac gtgaagggcg tattggtcaa tatcttcggc
     3361 ggcatcgccc gctgcgatat cctggcccag ggcgtggtcg ccgcggtcaa gcaggtgggt
     3421 ctgaatgtgc cgctggtggt gcgcctggaa ggcaccaacg ccgaactcgg caagaagatc
     3481 atcaacgaga gcggcctgaa cgtcatcgcc gccaacgacc tctcggacgg cgccgagaag
     3541 atcgtcaagg ccgtgcgggg cgctaaggcg tgatgcgaac agcgctggca ttcgccatgg
     3601 cgctatcggc ggtcgcctcc atggcgcacg ctgaacccgt gttcgatgcc tttcagaagc
     3661 tgtgtctcga gacaaatggc gcgcggacgc aggcgctttc gactgccgag gctcaaggat
     3721 ggcaggccgt cccccagtcg ttcctcagtg gcttttcgtc gaagaacgac gcaactggca
     3781 acgtcacgga tgtcgacggc agagctcata gcgaggccgg cggcttgacc ttccttgttg
     3841 tggcccatgc cgaccggatc gcgcccaaag ccatggttcc cgctgacctc tgtgtggtcg
     3901 gtcgtgcgcc gggtgacatt gaggctctca aggccgcggc cgcgggctat gccgcggtgc
     3961 caggcgactc ggcgcttgtt gatgagaaag gcgttgttgg attcgcgtgg cgcaccgaaa
     4021 aggacgccca tgtcgctctt gcggccaagg acgtccagga cgccgcagcg catcacaacg
     4081 catccgtatt gatcgcaggg gggcaaggcc gcatcgcgac cgtcgcgctc gccgtgcccg
     4141 ccaagtgagt cagaccaaat gtctatcctg atcaacaaag acacccgggt gatctgccaa
     4201 ggcttcaccg gggcgcaagg caccttccac tccgagcagg cgatcgccta cgggaccaag
     4261 atgctgggcg gcgtgacccc cggcaaaggc ggcacgacgc acatcggcct gccggtgttc
     4321 aacaccgtgg cggagatcgt gcgcaacgaa cgggtcgacg cgtctgcgat ctacgtgccc
     4381 ccggccttcg cggcggactc catcctggaa gccgtcgatg cggaaatccc gctgatcatc
     4441 tgcatcaccg agggcatccc ggtggccgac atggtcaagg tgcggcgcgc cctggatggc
     4501 tcgaaatcca ggctgatcgg gcccaattgc ccgggcgtgt tgaccccgaa tgaatgcaaa
     4561 ataggcatca tgccgggaaa catcttcaag aagggctcgg tgggcgttgt ctcccgctcg
     4621 ggcaccctta cctatgaggc ggtgttccag accactcaag tcggcctcgg ccaaagcacg
     4681 gccgtgggca tcggcggcga cccggtgaag ggcaccgagt tcatcgccat gctcgacctg
     4741 ttcctgaagg acccggagac ggagtcgatc atcatgatcg gcgagatcgg cggctcgggc
     4801 gaggaagacg cggccgagtt catcaagaat tcaccaacca agaagcctat ggtcggcttc
     4861 atcgcgggac gcaccgcgcc gcctggccgg cgtatgggtc acgcgggcgc gatcatctcc
     4921 ggcggcaagg gcggggccga tgacaagatc gccgcgatgg aagccgcggg catccgcgtt
     4981 tctccatctc cagcggcgct cggcaccacc ctgctcgagg tcctgaaggg cgcctgagta
     5041 agggcaattt agcgttagag cggtccgcgc tcggctcctt tcttcagaag ctccgcggtc
     5101 ctgcttaagg aaagcggacg acatggcgga cgacgcaggt ctgatcaacg aggttctcgc
     5161 cgagacctcc ttcctttacg gcggcaacgc ggccttcgtg gaagacctct atgcgaaatg
     5221 gtcggccgac cccaattcgg tcgagccctc ctggcgcgcc ttcttcgcct ccctgcacga
     5281 cagcgccgcc gacgtccaac gcgccgccgc cgaaccgtcc tggatccagc gcgccgcgcc
     5341 gtccgcccgt cccgactggc tctccgccat cgacggcctg tggcccgcgg tcgaggccaa
     5401 gctgggcgcc aggatcgccg agcgcgccgc gcccgccgaa cccgccgccg tctcctccga
     5461 tgcggttcgg gccgcgaccc tcgacagcct gcgcgccatc atgatgatcc gcgcctaccg
     5521 catgcgcggg cacctgaacg cgaggctcga cccgctgggc atcgccacga cgcccggcga
     5581 cgcctcggaa ctcgatcccg cgacctacgg cttctcggag gccgacttcg accggacgat
     5641 cttcctggac ttcgtgctgg gcctggagac ggcgacgatc cgcgagatcc tggcgatcct
     5701 gcgccgcacc tactgcggca atgtcggcgt gcagtacatg cacatctccg atcccaagga
     5761 gaagggctgg ctgcaggccc gcatcgaggg ccgcgacaag gagatcgtct tcaccaagga
     5821 gggcaaggtc gccatcctga agaagctgat cgagaccgag ggcttcgaga agttcctcca
     5881 ccgccgcttc cccggcacca agcgctttgg cctcgacggc ggtgaaagcc tggtcccggc
     5941 gctggaacag atcatcaagc gcggcggcgc gctgggggtg aaggacatca tcatcggcat
     6001 gccgcaccgc gggcgcctga acgtgctcgc cgcggtgatg ggcaagccct accaggtgat
     6061 cttccacgag ttccagggcg gctcgtccct gccctccgac gtcgagggct cgggcgacgt
     6121 gaagtaccac ctgggcgcct cgtcggaccg cgcgttcgac ggcaattccg tccacctgtc
     6181 gctgaccgcc aacccgagcc acctggagat cgtcaacccg gtggtgatcg gcaaggcccg
     6241 cgccaaacag gcctttgaac tcaggaccaa cgccaccgcc ggccgcggcc atgtcctgcc
     6301 actgctgatg cacggcgacg ctgcgttcgc gggccagggc gtggtggccg aatgcttcgc
     6361 gctgtcgcaa ctgcgcggct atggcgtggg cggctcggtc cacttcatcg tcaacaacca
     6421 gatcggcttt acgacgagcc ccaagaacag ccgctcctcg ccctatccgt ccgacgtggc
     6481 cctgatggtc gaggcgccga tcttccacgc caatggcgac gatccggaag ccgtggtgtt
     6541 cgccaccaag gtcgccatcg agtaccgcca gcagttcggc aaggacgtcg tcgtcgacat
     6601 gttctgctac cgccgcttcg gtcacaacga gggcgacgac ccgacgatga cccagccctt
     6661 gatgtacgcc aagatcaagg accacccgac ggtgcgcgac ctctacgccg cccgcctggt
     6721 cggcgagggc accgcgacgc aagccgaggt cgacggctgg atcgccgagt tcgacaagtt
     6781 cctcgacgcg gaattcgata gcgggaagtc ctaccacgcc gacaaggccg actggctgga
     6841 cggcaagtgg tcgggcctga agttgccggg ctcggaagag agcggcgtca ccggggtgcc
     6901 gatgcagaag ctgctcgacc tcggccacaa gatcaccgcc atccccgagc gcatcgccgt
     6961 ccacaagacc gtggagcggg tgatcgccgg gcgccgcgaa gccatcgaaa agggcgaggg
     7021 cctggactgg tccacgggcg agtccctggc cttcgcgacc ctgctcgacc agggctatcc
     7081 ggtgcgcctg tcgggccagg attcgatccg cggcaccttc acccagcgcc attccggcat
     7141 cgtcgaccag acgaccgagg agacctattt cccgctgcga aacctcggcc cccaacaggc
     7201 gcacttcgag gccttgaact cggcgctgtc ggaagaggcg gtgctgggct tcgaatacgg
     7261 cttctcgctc accgacccca acaccctgga catgtgggaa gcccagttcg gcgacttcac
     7321 caacggcgcc caggtggtca tcgaccagtt catctcgtcg ggcgaacgca agtggctgcg
     7381 gatgagcggc ctcgtgctgc tgctgccgca cgggtatgag ggccagggtc cggagcactc
     7441 gtccgcccgc ctcgagcgct tcctgcagat gtgcgcggag gacaatctgc aggtcgtcaa
     7501 cccgacgacg cccgccaatt acttccacgt cctgcgccgc cagatgatcc gcgagttcag
     7561 gaagccgctg atcgtcatga cgcccaagtc gttgctcagg aacaagcgcg cggtctccaa
     7621 cctctccgac ctcgccgagg gcaccagctt ccaccgggtg atggtcgacg gggccgaggc
     7681 cggcgccgat gtgggcggcg tcgtgctgca gcccgacgac aagatcaccc gggtcatcgt
     7741 ctgctccggc aaggtctatt tcgacctgat cgagcagcgg gcgaagaccg gccgcgacga
     7801 cgtctatgtc ctgcgtctcg agcagttcta tccctggccg ctgaagtcga tttcaggcgc
     7861 cctggccagg ttcaagaacg ccgagttggt ctggtgccag gaagagccga agaacatggg
     7921 cggctggacc ttcgtcgatc cctggctgga actgaccctc gaccgcatga aggtgaaggc
     7981 caagcgcgcg cgctacgtcg gccgcccggc ctcggcctcc acggccgccg gcctgatgac
     8041 ccgccacctg agagaactcg aagccttcct caccgaagcc ttcgcctgaa ccgtttgagt
     8101 ttttgagaat ccaaggagcg catcccctat ggccgacatc atgacgccag cgctgggcga
     8161 gtccgtcacc gaagccacgg tggcgcgctg ggccaagaag gccggcgacg cggtgcgcaa
     8221 ggatgagatc ctggtcgagc tggaaaccga caaggtgagc ctggaggtgg cttcgccttc
     8281 cgacggcgtc ctgtccgaaa tcgccttcga ggaaggcgcc accgtcgagc ccggcgccgt
     8341 cctgggcaag atcacagaag gcgccgccgc gccaaaggcc gctgcgcctg cgaaggctcc
     8401 ggaacccgcc aaggcgcccg agcccgcgaa ggcggcggcc ccggcagccg cgcctgcgcc
     8461 cgctccggtg aaggcggcgg ccgaagccgt gctggcgccc tcggcccagc gtgtggtggc
     8521 cgagaacaag ctcgacgcct ccgccatccc cggcaccggc aaggacggcc ggatcaccaa
     8581 gggcgacgcc ctggccgcgc tcgacgcccg ggccaaggcc ccggccgcgc ccacagcccc
     8641 ggccgcgccc cgcgaaatcc acgagcgcga ggagcgggtc cgcatgaccc ggcttcgcca
     8701 gaccatcgcg cgccggctga aggaagccca gaacaacgcc gccatgctga ccaccttcaa
     8761 cgaggtggac atgaccgcgg tcatggcgat gcgggcgacc tacaaggacg ccttcgagaa
     8821 gacccacggc gtgaagctgg gcttcatgag cttcttcgtc cgcgccgtga cccacgccct
     8881 gaagatggtc cccgacgtca acgccgagat cgacggcacc gacctgatct acaagaacca
     8941 ctacgacatc ggggtcgccg tcggcaccga aaagggcctc gtcgtccccg tggtccgcga
     9001 cgccgacgcc atgagcctgg ccgacatcga aaaggccatc ggcgcgctgg gcaagaaggc
     9061 ccgcgacggc cagctcgcca tcgaggacat gcagggcggc accttcacca tctccaacgg
     9121 cggggtctac ggctcgctga tgtcgacgcc gatcctgaat gcgccgcagt cggggatcct
     9181 cggcatgcac aagatccagg agcggcccat ggcgatcggc ggccaggtgg tgatccggcc
     9241 gatgatgtac ctggcgctca gctacgatca ccgcgtggtc gacggccagg gcgcggtgac
     9301 cttcctggtg cacgtcaagg aagccatcga ggaaccgcag cgcctgctgc tagacctcta
     9361 gggctttggt tttccggcgg accgggcgcc acgacggcgc ggacgcctag cgatttgggg
     9421 ggccaagaat ggctcagtac gacgtcgtca tcatcggagg cggccccggc ggctacaacg
     9481 ccgcgatccg cgcgggccag ctaggcctga aggtcgcctg cgtcgacaag ggcgtggacg
     9541 ggggcggcac gctgggcggg acctgcctga acgtcggctg catgccgtcg aaggccttgc
     9601 tgcacgcgtc tgagatgtac gacgccgcgg ccaatcactt tggcgagctc ggcatcgacg
     9661 tgaagcccaa gctgaacctg acccagatga tggcccagaa ggcgacctcg gtcgcccagc
     9721 tcaccaaggg catcgagttc ctgttcaaga agaacaaggt cgactggatc aagggcg
//
LOCUS       DATAJL010000743         4450 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108647,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000743 DATAJL010000000
VERSION     DATAJL010000743.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4450
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108647"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1302)
                     /gene="ccoG"
                     /locus_tag="VHN39_14190"
     CDS             complement(<1..1302)
                     /gene="ccoG"
                     /locus_tag="VHN39_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEX2817541.1"
                     /translation="MTVVIDRKKGQPARTAGEPVSAAARVRARAAKGGGLYQARVPIY
                     PKLVHGRWRAIKWALMALTLTIYWATPWIRWARPDGLPQQAVLVDFAGGRFYFFGIQL
                     WPQEVYYITGLLVMAAMALFLVSALFGRLWCGYACPQTVWTDLFIYVERAFEGDRNAR
                     MRLDAAPWSFDKLWRKAGKHAVWLGIAFGTGGAWIFYFHDAPTVLRGFWVGQAAVTAY
                     IFCALLTATTYVFAGFMREQVCIYMCPWPRIQGAMLDQHSLQITYRADRGEARGPHKK
                     GETWEGRGDCIDCNACVVVCPMGIDIRDGSQLECINCGLCADACDEIMDKVGRPRGLI
                     SYDTDAAVAARASGEPAVYKLVRPRTVYYAGALSLVSVLMLWGLTHRSVIDLHVLRDR
                     NPMFVRMQDGSVRDGYTLKIANRSFYAKTFAVRFSGLAVAPE"
     gene            complement(1308..2174)
                     /gene="ccoP"
                     /locus_tag="VHN39_14195"
     CDS             complement(1308..2174)
                     /gene="ccoP"
                     /locus_tag="VHN39_14195"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit III"
                     /protein_id="HEX2817542.1"
                     /translation="MSERKIDEPTGVETTGHEWDGIRELDNPLPRWWLWTWYACIAVA
                     VVYWVLMPAWPGLHGYTKGILHQSDRVKVVHDLAKLKALRGAEGAQLQTASLEEIERD
                     PKLQAYAMAAGQALFGDNCATCHGQGGTGGKGYPNLRDDVWLWGGSLEQIQHTITYGV
                     RTGEPGAGNTLMPAFGRDQMLKDGQIDDLTEYVVALSHRRANPAAVARVAQLFTDQCA
                     SCHGPLGKGDQSRGIPNLTDNEWLYGSTREAIRDQIVNGRGGVMPTWGKRFDPQTIKA
                     LTVYIHANAGGQ"
     gene            complement(2167..2343)
                     /locus_tag="VHN39_14200"
     CDS             complement(2167..2343)
                     /locus_tag="VHN39_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit 3"
                     /protein_id="HEX2817543.1"
                     /translation="MTGIQQYEAVSRFAQQGGTIYFALLFAAGLIYALWPRNKEAFQR
                     LARLPLEDDESEDV"
     gene            complement(2340..3077)
                     /gene="ccoO"
                     /locus_tag="VHN39_14205"
     CDS             complement(2340..3077)
                     /gene="ccoO"
                     /locus_tag="VHN39_14205"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEX2817544.1"
                     /translation="MWKHHAKFERNSLILLIGILVVVAIGGLIEITPLFYLESTIEKV
                     QGMRPYTPLELAGRDVYVREGCYLCHSQMIRPLRDEVERYGHYSLAAESMYDHPFQWG
                     SKRNGPDLARVGGKYSDEWHRQHLTDPRSMVPESTMPPYAFLANKDLDYHDMVERLAA
                     QQKVGVPYTKDEVAHAIDDLEAQADPFDSRGTALKKRYGAKIVQRDFDGHPDRITDMD
                     ALIAYLQMVGTLVDFRTYHADAPENQR"
     gene            complement(3088..>4450)
                     /gene="ccoN"
                     /locus_tag="VHN39_14210"
     CDS             complement(3088..>4450)
                     /gene="ccoN"
                     /locus_tag="VHN39_14210"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEX2817545.1"
                     /translation="IIACQLTWPSLFYVPSEGWLNFGRIRPLHTSAVIFAFGGNALIA
                     TSFWVVQRTCRARLAGGIWPWFVFWGYQLFIVSAAIGYLSGVTQSREYAEPEWFTDIW
                     LTVVWVAYLLIFLGTLWKRKEPHIYVANWFYLAFIVTIAMLHIVNNLAMPVSLLNHKS
                     YSAFSGVQDALVQWWYGHNAVGFFLTAGFLAIMYYFVPKRIDRPIYSYRLSIVHFWAL
                     IFIYIWAGPHHLHYTALPQWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDP
                     VVRMMVTSLAFYGMATFEGPVMSIREVNALSHYTDWGIGHVHSGALGWVGFITFGAVY
                     CLVPWLWKKKEMWSTRLIEWHFWIATTGILLYITAMWVSGIMEGLMWREYTPQGFLAN
                     SFIETVSAKHVENIVRMVGGLMYLSGTLIMAFNIWRTIRMPGATKVEAEAAAPALSAL
                     AAA"
BASE COUNT          771 a         1408 c         1546 g          725 t
ORIGIN      
        1 ctcaggcgcc acggccagcc cgctgaagcg caccgcgaag gtcttcgcat agaaggagcg
       61 gttggcgatt ttcagggtat agccgtcgcg gaccgagcca tcctgcatcc gcacaaacat
      121 cggattgcgg tcgcgcagga catgcaggtc gatgacgcta cggtgcgtga ggccccagag
      181 catcaggacg ctgaccagac tcaaggcccc ggcgtagtag acggtgcgcg gccgcaccag
      241 cttgtagacg gccggctctc cgctggcgcg cgccgccacc gcggcgtcgg tgtcgtagga
      301 aatcaggccg cgcggccggc cgaccttgtc catgatctcg tcgcaggcgt cggcgcagag
      361 cccgcagttg atgcactcca gttgcgaacc gtcgcggatg tcgatgccca tcgggcagac
      421 cacgacgcag gcgttacagt cgatgcagtc gccgcgcccc tcccaggttt cgcccttctt
      481 gtgcggcccg cgcgcctcgc cgcggtcggc gcggtaggtg atctgcaggg agtgctggtc
      541 gagcatggcg ccctggatgc gcggccaggg gcacatgtag atgcagacct gctcgcgcat
      601 gaagccggcg aagacatagg tcgtggcggt gagcagggcg cagaagatgt aggcggtgac
      661 cgccgcctgc ccgacccaga acccgcgcag gacggtgggc gcatcgtgga aatagaaaat
      721 ccaggcgccg ccggtgccga aggcgatgcc gagccagacg gcgtgcttgc cagccttgcg
      781 ccagagcttg tcgaaggacc agggcgccgc gtccaggcgc atacgcgcgt tgcggtcacc
      841 ctcgaaggcc cgctccacat agatgaagag gtcggtccag acggtctgcg ggcaggcgta
      901 gccgcaccac aggcgtccga aaagcgcgct caccaggaac agcgccatgg ccgccatcac
      961 caggaggcca gtgatgtaat agacctcctg gggccagagc tggatcccga agaagtagaa
     1021 gcggccgccg gcgaaatcga ccagcaccgc ctgctgtggc agcccgtcgg gcctcgccca
     1081 gcggatccag ggcgtcgccc agtagatcgt gagcgtgagc gccatcaggg cccacttgat
     1141 cgcccgccag cggccgtgga ccagcttcgg atagatcgga acccgcgcct ggtagagccc
     1201 gccgcctttg gccgccctcg cccgcaccct ggcggcggcc gagaccggtt cgccggccgt
     1261 ccgggcgggt tggcccttct tgcggtcgat gaccacggtc atcgggacta ctgacccccg
     1321 gcgttcgcgt ggatgtagac ggtcagcgcc ttgatggtct gcgggtcgaa ccgcttgccc
     1381 caggtcggca tgacgccgcc gcggccgttg acgatctggt cgcggatggc ctcgcgcgtc
     1441 gagccgtaga gccactcatt gtcggtcagg ttcggaatgc ctcggctctg gtcgcccttg
     1501 cccagcggcc cgtggcacga cgcgcattga tcggtgaaca gctgcgcgac gcgggccacg
     1561 gcggccgggt tcgctcgccg atgggacagg gccaccacgt actcggtcag gtcgtcgatc
     1621 tggccgtcct tcagcatctg gtcgcggccg aaggcgggca tcagggtatt gcccgcgccg
     1681 ggctcgccgg tccggacgcc ataggtgatg gtgtgctgga tctgctccag ggagccgccc
     1741 cagagccaga cgtcatcgcg caggttggga tagcccttgc cgcccgttcc gccctgcccg
     1801 tggcacgtgg cgcagttgtc gccgaacagc gcctggccgg cggccatggc gtaggcctgc
     1861 agcttggggt cgcgctcgat ttcctccagg ctcgccgtct gcaactgggc gccctcggcg
     1921 ccgcgaagcg ccttcagctt cgccaggtcg tggaccacct tcacccggtc ggactggtgc
     1981 aggatgccct tggtgtagcc gtgcaggccg ggccaagccg gcatcagcac ccagtagacc
     2041 accgccaccg cgatgcaggc ataccaggtc cacagccacc agcgcggcag cggattgtcc
     2101 agctcgcgga tgccgtccca ctcgtgcccg gtggtctcga ccccagtcgg ctcgtcgatc
     2161 ttgcgctcag acatcttcgc tctcgtcgtc ttcgaggggg agccgggcga gacgttggaa
     2221 cgcctccttg ttgcggggcc agagcgcgta gatcaggccg gccgcgaaca gcagggcgaa
     2281 gtagatcgtg ccgccctgct gggcgaagcg ggagaccgct tcgtactgct ggatgccggt
     2341 catctttggt tctccggcgc gtcggcgtgg taggtgcgga agtcgaccag ggtgcccacc
     2401 atctggaggt aggcgatcag cgcgtccatg tcggtgatgc ggtccggatg gccgtcgaag
     2461 tcgcgctgga cgatcttggc cccgtagcgt tttttcaggg ccgtgccgcg cgagtcgaat
     2521 ggatcggcct gggcctcgag gtcgtcgatc gcgtgggcga cctcgtcctt ggtgtaggga
     2581 acgccgacct tctgctgggc ggccaagcgc tcgaccatgt cgtggtagtc gaggtccttg
     2641 ttggccagga aggcgtaggg cggcatcgtc gactccggca ccatcgagcg cggatcggtg
     2701 agatgctggc gatgccattc atcggaatat ttgccgccga cccgggccag gtccggcccg
     2761 ttgcgcttgg acccccactg gaaggggtgg tcgtacatgc tctccgcggc caggctgtag
     2821 tggccgtagc gctccacctc gtcgcgtagc ggacggatca tctgcgagtg gcagaggtag
     2881 cagccctcgc ggacatagac gtcgcggccg gcgagttcca gcggggtgta gggccgcatg
     2941 ccctgcacct tctcgatagt gctctccagg tagaagagcg gggtgatctc gatgagcccg
     3001 ccgatggcca cgaccaccag gatgccgatc aggaggatca gcgagttgcg ctcgaacttg
     3061 gcgtgatgct tccacatgat gctggcctta agccgccgcg agggcggaaa gggcaggcgc
     3121 cgcggcctca gcttcgacct tggtcgcgcc gggcatgcgg atcgtccgcc agatgttgaa
     3181 ggccatgatc agcgtgccgg acaggtacat caggccaccg accatccgga cgatgttctc
     3241 gacgtgcttg gccgaaacgg tctcgatgaa ggaattggcg aggaagcctt gcggcgtgta
     3301 ctcgcgccac atcagaccct ccatgatccc ggagacccac atggcggtga tgtagagaag
     3361 gatgccggtg gtcgcgatcc agaagtgcca ctcgatcagg cgggtggacc acatctcctt
     3421 cttcttccag agccacggca ccaggcagta gacggcgccg aaggtgatga agccgaccca
     3481 gccgagcgcg ccggaatgga cgtggccgat gccccagtcg gtgtagtgcg agagtgcgtt
     3541 gacctcgcgg atcgacatca ccggaccctc gaaggtcgcc atgccgtaga aggcgagcga
     3601 ggtgaccatc atccggacca ccgggtcggt gcgcagcttg tcccaggcgc ccgagagcgt
     3661 catcaggccg ttgatcatcc cgccccagga cggcatccac agcatgatcg agaaggtcat
     3721 gccgagcgtc tgggtccact gcggcagggc cgtgtagtgg aggtggtgcg ggccagccca
     3781 gatgtagatg aagatcagtg cccagaagtg gacgatggag agccggtagg agtagatcgg
     3841 ccggtcgata cgcttgggca cgaagtagta catgatcgcc aggaagccgg cggtcaggaa
     3901 gaagcccacg gcgttgtggc cgtaccacca ctggacgagc gcatcctgca cgcccgaaaa
     3961 ggccgagtag ctcttgtggt tcagcaggct gaccggcatc gccagattgt tgacgatgtg
     4021 cagcattgcg atggtcacga tgaaggccag gtagaaccag ttggccacgt agatatgcgg
     4081 ttccttgcgc ttccagagcg tgcccaggaa gatcagcagg taggcgaccc agacgacggt
     4141 cagccagatg tcggtgaacc actcgggctc ggcgtattcg cggctctggg tgacgccgga
     4201 gaggtagccg atcgctgcgg agacgatgaa cagctggtag ccccagaaca cgaaccacgg
     4261 ccagatcccg ccggccagcc tcgcgcggca ggtgcgctgc acgacccaga aggacgtggc
     4321 gatgagcgcg ttgccgccga aggcgaagat cacggcggag gtgtgcagcg gccgtatccg
     4381 gccgaagttc agccagccct ccgagggcac atagaagaga ctgggccagg tgagctggca
     4441 ggcgatgatc
//
LOCUS       DATAJL010000744         2185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_69985,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000744 DATAJL010000000
VERSION     DATAJL010000744.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69985"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            44..940
                     /gene="rfbA"
                     /locus_tag="VHN39_14215"
     CDS             44..940
                     /gene="rfbA"
                     /locus_tag="VHN39_14215"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008879 - glucose-1-phosphate
                     thymidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009243 - O antigen biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019305 - dTDP-rhamnose biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEX2817546.1"
                     /translation="MRRGIILAGGSGSRLHPLTLAVSKQLLPVYDKPMIYYPLSVLLL
                     AGVREILIITTPEDQAGFKRLLGDGSQLGIKLEYVVQPKPDGLAQAYILGEAFIAGEP
                     SVMVLGDNIFFGQNFTRSLQAADARESGATVFGYLVQDPERYGVVNFGPDGRALGIEE
                     KPAKPKSNYAVTGLYFYDGRASQFAKILKPSARGELEITALNQVYLEAGELNVELLGR
                     GFAWLDTGTHDSLIQAGEFIRAVEQRQGLRIGCIEEICYRRGWIDAQQLRRLGDGLAK
                     SEYGQYLREVAERPLSADDPGD"
     gene            complement(973..1137)
                     /locus_tag="VHN39_14220"
     CDS             complement(973..1137)
                     /locus_tag="VHN39_14220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817547.1"
                     /translation="MPADVSFQDVSTRSVSVETQASSRLPLGIGLAIAASASVGLWFA
                     IAAGVKALFF"
     gene            1296..1979
                     /locus_tag="VHN39_14225"
     CDS             1296..1979
                     /locus_tag="VHN39_14225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEX2817548.1"
                     /translation="MLADQGEMKRGRVVAADARRRPIAFNSSYPVATHPMKRLLDVVV
                     AGFALLLFLPLLLMVMMVIRLESPGSSIFRQRRTGYRGKVFTIYKFRTMTVTEDCDKV
                     RQATKGDARVTEVGALLRKLSIDELPQLWNVLKGDMSIVGPRPHALAHDEYYGALIPT
                     YAARFRAKPGLTGYAQVNGFRGEIRDTRCMSDRVAADNSYIEEWSPALDLAILVRTVP
                     LIFSDPRAY"
BASE COUNT          397 a          696 c          723 g          369 t
ORIGIN      
        1 ccgagatcgt ggccgaactt cagacgcaag agaggtcggc ggcatgagac gcggcatcat
       61 cctggccggc ggctccggct cgcggttgca ccccctgacg ctggcggtct ccaagcagct
      121 gctgccggtc tatgacaagc cgatgatcta ctatccgctg tcggtcctgc tgctggccgg
      181 cgtgcgcgag attctgatca tcaccacacc cgaggaccag gcgggcttca aacgcctcct
      241 gggcgacggc tcgcagctcg ggatcaagct cgaatatgtc gtccagccca agcccgacgg
      301 cctggcccag gcctatatcc tcggcgaggc gttcatcgcc ggcgagccca gcgtcatggt
      361 gctgggggac aacatcttct tcggccagaa cttcacccgc tcactgcagg cggccgacgc
      421 gcgcgagagc ggcgccacgg tcttcggcta tcttgtgcag gaccccgagc gatacggcgt
      481 cgtgaacttc ggccccgacg gccgcgcgct gggcatcgaa gagaagcccg ccaagccgaa
      541 gtcgaactat gcggtcaccg gtctctattt ctacgacggc cgcgcaagcc agttcgccaa
      601 gatcctgaag ccgtccgcgc gcggcgagct ggagatcacc gcgctcaatc aggtctacct
      661 ggaagccggc gagctgaatg tcgaactcct gggccgcggc ttcgcctggc tggacaccgg
      721 cacccacgac agcctgatcc aggccggcga gttcatccgg gcggtggagc agcgccaggg
      781 cctcaggatc ggctgtatcg aggagatctg ttatcgccgc ggctggatcg acgcccagca
      841 gctgcgcagg ctgggcgatg gactggccaa gagcgagtac ggacaatatc tgcgcgaggt
      901 ggccgagcgg ccgctgagcg cggacgatcc cggcgattag gtcgggcttt cggagacggg
      961 gccgccggcg ccctagaaga acagcgcctt gacgcccgcc gcgatggcga accacaggcc
     1021 gaccgaagcg ctggccgcga tggcgaggcc gatcccgagg ggcagccgcg acgacgcctg
     1081 cgtctctaca gagacgctgc gcgtgctgac gtcttggaac gacacgtctg ctggcattgc
     1141 tcttgctcca gacccgcctg ttggggcggc tgtcccacaa agcaccaggc gcgcttaaat
     1201 ttctgtgccg agagatggga aacgtgccgt taagcgtctt tcgatcgaga gcggccgtag
     1261 atgcaactga aggctggggg agcgaagact tgagcgtgct ggcagaccag ggcgagatga
     1321 agcgcggccg cgtcgtggcc gccgatgctc gccggcgtcc catcgccttc aactccagct
     1381 atcccgttgc gacgcatccg atgaagcggc ttctggatgt ggttgtggcg gggtttgcgc
     1441 tgctcctgtt cctgccgctc ctgttgatgg tgatgatggt gatccggctg gagtcgccgg
     1501 ggtcatcgat cttccgtcag cgccggactg gctatcgagg caaggtcttc acgatctaca
     1561 agttccgcac catgacggtg acggaggact gcgacaaagt ccgccaggcg accaagggcg
     1621 acgcccgggt gaccgaggtc ggggcgctgt tgcgcaaact gagcatcgat gagctgccgc
     1681 agctgtggaa cgtgctgaaa ggcgacatgt cgatcgtggg gccgcggccg cacgcgctgg
     1741 cgcatgacga gtactatggg gcgctgatcc cgacctatgc ggcgcgcttc cgggccaagc
     1801 ccggtctgac cggctatgcc caggtgaacg gcttccgcgg cgagatccgc gacacccgct
     1861 gcatgagcga ccgggtggcc gccgacaaca gctacatcga agagtggtcg ccggccctcg
     1921 acctggcgat cctggtcaga acagtgccgc tcattttcag cgacccgcgg gcctactgag
     1981 cgccgacaac cagcgcgggc gcccgccaca acccgccacc ctcctagaag cctgacgaag
     2041 ccgggaccgc ttaccgccgt ctgatcggca cggaaaacag acttggctgt tcgattgaca
     2101 acacaggcgc agaatagact agtcgtcatt gttaatggtt aacgcctatt gcttcgcaat
     2161 ggtgggaatt cagactgttg aggat
//
LOCUS       DATAJL010000745         1586 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_63626,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000745 DATAJL010000000
VERSION     DATAJL010000745.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1586
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63626"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VHN39_14230"
     CDS             complement(<1..365)
                     /locus_tag="VHN39_14230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEX2817549.1"
                     /translation="MSWRTLPQSLGVDVLALKAAAFELSPDPAMVVDETGALVAVNEA
                     AEALFGQGLSLLARGRFSAALPPGSALVSLLNRAIEEDAKVRERGVQISLFGLAPFEA
                     DGAAAPLGDGSVLLTLTVRA"
     gene            complement(362..1369)
                     /gene="dusB"
                     /locus_tag="VHN39_14235"
     CDS             complement(362..1369)
                     /gene="dusB"
                     /locus_tag="VHN39_14235"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEX2817550.1"
                     /translation="MSSSLKLDDVEVGGRVWIAPMTGVSDLPFRRAASRLGASYVATE
                     MVACAEFAKGRPDVVRRAAVGEGLPLMVVQLVGRDPGYMAEGARLAQAAGAQIIDLNF
                     GCPAREVTGGHGGSALMREPELAERLIASAIEAVDVPVTVKMRLGWDDASRNAPAIAA
                     AAEALGVAAITVHGRTRCQFYKGAADWAAVREVKAAVSIPVIVNGDIVDGETARAALA
                     ASGADGVMVGRGVYGRPWIAAQLEAELAGRAFEAPDAGMRLAIALDHFNESLRFYGDR
                     LGLKIFRKHLASYVEQAPWPASAEDRRHARGALCRLEAPAEVARGLTSLWTDPERRLA
                     A"
     gene            1470..>1586
                     /locus_tag="VHN39_14240"
     CDS             1470..>1586
                     /locus_tag="VHN39_14240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070567 - cytidylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEX2817551.1"
                     /translation="MSFSAVVVAAGVGLRAGPGDPKAWRLLGGRPMVRWSVAG"
BASE COUNT          245 a          579 c          546 g          216 t
ORIGIN      
        1 gccctgaccg tcagcgtcag cagcaccgag ccgtcgccaa gcggcgcggc ggcgccgtcg
       61 gcctcgaagg gcgccaggcc gaaaaggctg atctgtacgc cccgctcgcg gaccttggcg
      121 tcctcttcga tggcgcgatt gagcagtgag acgagggccg atcccggtgg cagggccgcg
      181 ctgaaccggc cacgcgccag caggctcagg ccctggccga acagggcctc ggccgcttcg
      241 ttgaccgcca ccagggcgcc ggtctcatca accaccatcg ccgggtcggg gctgagctcg
      301 aaggccgcgg ccttgagcgc caggacatcg acgcccaggg attgcggaag ggtgcgccag
      361 ctcatgcggc gagcctccgt tcaggatcgg tccagagcga ggtcaggccc cgcgccacct
      421 cggcgggagc ctccagccgg catagcgcgc cgcgggcgtg gcgccggtcc tcggcgctgg
      481 caggccatgg cgcctgctcg acgtaggacg ccaggtgctt gcggaagatc ttcaggccca
      541 ggcggtcgcc gtaaaacctg agggactcgt tgaagtggtc cagtgcgatg gccagacgca
      601 tgccggcgtc cggagcctcg aaggcccggc ccgcgagctc ggcctcaagc tgtgcggcga
      661 tccagggccg gccatagacg ccgcgcccga ccatcacccc gtcggcgccg gaagccgcga
      721 gcgccgcgcg cgcggtctca ccatcgacga tgtcgccatt gacgatcacc gggatcgaca
      781 cggcggcctt cacctcgcgg acggctgccc agtcggcggc gcccttgtag aactgacagc
      841 gggtgcggcc atggacggtg atcgcggcca cgcccagagc ctcggcggcc gcggcgatgg
      901 ccggcgcatt gcgcgaagcg tcgtcccagc ccaggcgcat cttgaccgtc accggcacgt
      961 ccaccgcctc gatggccgag gcgatcaggc gctcggccag ctccggctcg cgcatcaggg
     1021 ccgaaccccc gtgaccgccg gtcacctcgc gggccgggca gccaaagttg aggtcgatga
     1081 tctgggcgcc ggcggcctgg gccaggcgcg cgccctcagc catatatccc ggatcgcggc
     1141 cgaccagctg gacgaccatc agcggcaggc cctcgcccac cgcggcgcgg cgcacgacat
     1201 cgggccggcc cttggcgaat tcggcgcagg cgaccatctc ggtggccaca taagaggcgc
     1261 ccagccggct tgcggcgcgc cggaacggca ggtccgagac ccccgtcatc ggcgctatcc
     1321 acacccggcc gccaacctcg acatcgtcaa gcttgagcga actgctcatt ttgtaatcat
     1381 ccccacagcc gcctttttag gcaatttgtg cagtgcagta aaccccgcgt gaactggaca
     1441 agcccaaccg tgtccctaaa cacaccacca tgagcttctc cgctgtggtg gtggcggccg
     1501 gcgtcggcct gcgcgccggc ccgggtgacc ctaaggcgtg gcgcctcttg ggcgggcgtc
     1561 cgatggtgcg ctggtcggtc gcaggc
//
LOCUS       DATAJL010000746         2070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_70024,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000746 DATAJL010000000
VERSION     DATAJL010000746.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70024"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(43..408)
                     /locus_tag="VHN39_14245"
     CDS             complement(43..408)
                     /locus_tag="VHN39_14245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003164449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2817552.1"
                     /translation="MAKKVLIVEDNELNMKLFHDLLDAQGYETLQTREGLQALALARE
                     HRPDLILMDIQLPEISGLEVTKWLKEDADLASIPVVAVTAFAMKGDEERIREGGCEAY
                     ISKPISVVHFLDTIKRLMG"
     gene            515..1174
                     /locus_tag="VHN39_14250"
     CDS             515..1174
                     /locus_tag="VHN39_14250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817553.1"
                     /translation="MAQFAAPPSAPTLESLGLARDRPLVIVDVDEVLGLFMLGFGAFI
                     AERGYELRFERFALFQNIYRPGATEHLDLAEGRKLFEEFFRTSCGEIEPAPGAVEALR
                     RLKPKAEILILSNAPAEAEQLRAAWLRRHGLPHALILSSGPKGPITSGLVAQTRGRTA
                     FVDDLIPNLDSVAEHSPATATFQHVADLRLRPLAPRSDRHPRIDDWAELGQAIEASIS
                     G"
     gene            1237..2070
                     /locus_tag="VHN39_14255"
     CDS             1237..2070
                     /locus_tag="VHN39_14255"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2817554.1"
                     /translation="MRWRLTATFGPPLLALVFGLGVFLKGESVLHHRYPLPPVVALPA
                     RPAAEGAHLAAIYGCTDCHGDDLRGRPFPHPDPFRVVTSANLTQKAKTYSDADFARVI
                     REGLTPQGYSVEFMPSNAFVHMTDAEVAAIVSYVRSLPAGGPDTVEWRPGWKGYWQLA
                     NGKFPPGQAFMADARRQAPRDMGAATAEGRHLTAVACSECHGGDLTGQKGGPPDLMVA
                     GAYDPGDFHRLLKTGVAAGGRQVGMMSAAAKKRFSQLTDDEVEAIRLYLVARANAPAA
                     K"
BASE COUNT          317 a          739 c          676 g          338 t
ORIGIN      
        1 cctcgatatc atccaccaca aggatacgcg cactcatcgc gatcagccca tcaggcgttt
       61 gatggtgtcg aggaaatgga ccaccgagat gggcttggag atataggcct cgcagccgcc
      121 ctcccggatc cgttcctcgt cgcccttcat ggcgaatgcg gtgacggcca cgaccgggat
      181 cgaggcgaga tcggcgtctt ccttgagcca tttggtgacc tccaggccgg agatttccgg
      241 cagctggatg tccatcagaa tcaggtcggg gcggtgctcg cgcgccagcg ccaacgcctg
      301 gaggccctcg cgggtctgca gcgtctcgta gccctgggca tcgaggagat catgaaagag
      361 cttcatgttc agctcgttat cctcgacgat gaggaccttc ttggccattt aggacccggc
      421 tctgttctcg tggacaccgc gcagcgcgga cgaccccacc ctgccctctt catcccatgg
      481 atatccttaa acttcgttag cctaaggagt cgtcgtggcg cagttcgccg cacccccgag
      541 cgcgcccacc ctcgagagcc tcggtctcgc ccgggaccgc ccgctggtga tcgtcgacgt
      601 ggatgaggtg ctgggcctgt tcatgctggg cttcggggcg ttcatcgccg agcgcggcta
      661 cgagctgcga ttcgagcgat tcgccctctt ccagaacatc taccggcccg gcgcgaccga
      721 gcatctggac ctggccgaag gccgcaaact gttcgaagag ttcttccgca ccagttgcgg
      781 cgagatcgaa ccggcgcccg gcgcggtgga ggcgctgcgc cgcctgaagc cgaaggcgga
      841 gatcctgatt ctctccaatg ctccggccga agccgaacag ctgcgcgccg cgtggctgag
      901 gcgccatggc ctgccgcacg ccctgatcct gtcgagcggc cccaagggtc cgatcacctc
      961 cggcctggtg gcccagacgc gcggcaggac cgccttcgtc gacgacctga tccccaacct
     1021 cgattcggtg gccgagcatt cgccggcgac ggcgaccttc cagcacgtgg cggacctgcg
     1081 cctgcgcccg ctcgccccgc gctcggaccg gcacccgcga atcgacgact gggccgagct
     1141 cggccaggcg atcgaggctt cgatctcggg ataggcggcg cctagccaag gccaaccggc
     1201 tcggccaacc tgcggccggg ttcgggaggg ttgcgcatgc gctggcggct gacggcgacg
     1261 tttggtcctc cgttgctggc cctcgtcttc ggccttggtg tcttcctgaa gggcgaaagc
     1321 gtcctgcacc accgctatcc gctccccccg gtcgtcgccc tgccggcgcg gcccgccgcc
     1381 gagggggcgc atctggcggc tatctacggc tgcaccgact gtcacggcga cgacctgcgc
     1441 ggccggccgt tcccccatcc cgacccgttc cgggtcgtca cctccgccaa cctgacgcag
     1501 aaggccaaga cctattccga cgccgacttt gcccgggtga tccgcgaggg cctgacgccg
     1561 cagggctaca gcgtagagtt catgccctcc aacgccttcg tccatatgac cgacgccgag
     1621 gtcgccgcca tcgtgagcta tgtccgcagc ctgcccgccg gcggccccga cacggtggag
     1681 tggcggcccg gctggaaggg gtactggcaa ctggcgaacg gcaagttccc gccgggccag
     1741 gccttcatgg ccgatgcgcg gcgccaggcg ccgcgggaca tgggcgcggc cactgccgag
     1801 ggccgccacc tcaccgctgt cgcctgttcg gagtgccacg gcggcgacct gaccggccag
     1861 aagggcggac ctccggacct gatggtcgcc ggcgcctatg accccggcga cttccaccgc
     1921 ctgctgaaga ccggcgtggc ggcgggggga cgccaggtgg gcatgatgtc ggcggcggcg
     1981 aagaagcgct tcagccagct cacggacgac gaggtcgagg cgatccggct ctacctcgta
     2041 gcccgcgcca acgcccccgc agccaagtag
//
LOCUS       DATAJL010000747         1895 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_63663,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000747 DATAJL010000000
VERSION     DATAJL010000747.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1895)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1895)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1895
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63663"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1314
                     /locus_tag="VHN39_14260"
     CDS             <1..1314
                     /locus_tag="VHN39_14260"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX2817555.1"
                     /translation="PILLKDNIETADRIATTAGSLALAHNFTGRDSPLAHRLRAAGAI
                     ILGKTNLSEWANIRSGSSISGWSGVGGQTRNPYAFDRNACGSSSGSGSAAAASLAAAA
                     VGTETDGSVTCPSAVNGLVGLKPTVGLISRTRVVPISHTQDTPGPMTRDVRDAALLLQ
                     VMAGSDPDDPATAHADAVSHDYLSGLKPGALSGVRIGVMRFAAGMPPETAAVFEQALQ
                     VLKAAGATLVEIPKFPSDTKDLGPLENTVLMTELKADLNAYLASTSPERVPTRTLSDL
                     IAFDKAHAAQEMSLFGQDLFEEAQKTAGLADPAYLKAKADAHRLAGPEGIDRMLSENH
                     VSALVAPTMAPAWLIDPVLKDAGVFGEAGGPPAIAGYPHLTLPMGQVRGLPVGLSFIG
                     PAWSEASLLAYGYAFEQAAHARKPPRYRPSSVGLTTGGDVVKRAP"
     gene            1311..1616
                     /locus_tag="VHN39_14265"
     CDS             1311..1616
                     /locus_tag="VHN39_14265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817556.1"
                     /translation="MNRRLIDLLVALAAIPPGCACGVYGWRLVSFAGFAVRIGEDIAP
                     ETWGQIGLVAGQMIVIAAALLIVWQGAAAQNWRKAGIALAVAWLATAPLLILMLRPF"
     gene            complement(1627..>1895)
                     /locus_tag="VHN39_14270"
     CDS             complement(1627..>1895)
                     /locus_tag="VHN39_14270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEX2817557.1"
                     /translation="YLLIDARHGLKDVDTEALDTFDVAAVSYQIVLTKADKLKASEVE
                     AVVERTLKAIAKRPAAFPRVLATSAEKGTGIPELRAEIVAACAV"
BASE COUNT          274 a          664 c          665 g          292 t
ORIGIN      
        1 ccgatcctgc tgaaggacaa catcgagacc gccgacagga tcgccaccac ggcggggtcg
       61 ctggccctgg cgcacaactt taccggccgc gactcaccct tggcgcatcg cctgagggcc
      121 gccggcgcga tcatcctggg caagaccaac ctgtccgaat gggcgaacat ccggtccggg
      181 tcttccatca gcggctggag cggggtgggc ggccagaccc gcaaccccta tgcgttcgac
      241 cgcaacgcct gcgggtccag ttccggctcc gggtccgcgg cggcggcgag cctcgcggcg
      301 gcggcggtcg gcaccgagac cgacggctcg gtcacctgtc cctcggccgt caatgggctg
      361 gtgggcctga agccgaccgt gggcctcatc tcgcggaccc gcgtcgtgcc gatcagccat
      421 acccaggaca cccccggtcc catgacccgc gacgtccgcg acgcggccct gctgctgcag
      481 gtcatggccg gctcggaccc ggacgatcca gcaaccgcgc acgccgatgc ggtcagccac
      541 gactatctgt ccggcctgaa gcccggcgcg ctttccggcg tccggattgg ggtgatgcgg
      601 ttcgccgcgg gcatgccccc ggaaaccgcc gccgtcttcg agcaggcttt gcaggtgctg
      661 aaggccgccg gcgcgaccct ggtcgagatt ccgaaattcc ccagcgacac taaagacctt
      721 gggcccctgg agaacacggt cctgatgacc gagctgaagg cggacctgaa cgcctatctg
      781 gcttcgacct cgcccgaacg cgtgccgacg aggacgctgt ccgacctcat cgccttcgac
      841 aaggcccacg ccgcccagga gatgtccctg ttcggccagg acctgttcga ggaggcgcag
      901 aagaccgcag gcctggccga cccggcctat ctcaaggcca aggcggacgc ccaccggctc
      961 gccgggcccg aggggatcga ccggatgctc agcgaaaatc acgtgtccgc cctggtcgcg
     1021 ccgaccatgg cgccggcctg gctgatcgat ccggtgctga aggacgccgg cgtgttcggc
     1081 gaggctggcg gcccgccggc gatcgccggc tatccgcatc tcaccctgcc gatggggcag
     1141 gtgcgcggac tgccggtcgg gctgtccttc atcggcccgg cctggagcga ggcctcgctg
     1201 ctggcctacg gatatgcctt cgaacaggcc gcgcacgccc gcaagccacc ccgctatcga
     1261 ccctcgtccg tcgggctgac gacgggcggc gacgtggtga agcgggctcc gtgaaccggc
     1321 ggctgatcga cctgctggtg gcgctggcgg cgatcccgcc cggatgcgcc tgcggtgtct
     1381 atggctggcg gctggtgagt ttcgcgggct tcgcggtcag gataggcgag gacatcgcac
     1441 ccgagacctg gggccagatc ggcctggtcg cgggccagat gatcgtcatc gctgcggccc
     1501 tgctgatcgt ctggcagggc gcggcggcgc agaactggcg caaggccggg atcgcgctgg
     1561 cggtggcctg gctggctacc gcgcccctgc tgatcctgat gctgcggccg ttctgaagga
     1621 cgcccgctag accgcgcagg ccgccacgat ctcggcgcgc agttccggga tgccggtccc
     1681 cttctcggcg gaggtggcga gcacgcgggg gaaggcggcc gggcgcttgg cgatggcttt
     1741 tagcgtgcgc tccacgacgg cttcgacttc ggaggccttc agcttgtcgg ccttggtgag
     1801 cacgatctgg taggagacgg cggccacgtc gaaggtatcc agcgcctcgg tgtccacgtc
     1861 cttcaggccg tggcgcgcgt cgatcaagag gtagg
//
LOCUS       DATAJL010000748         1810 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_84426,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000748 DATAJL010000000
VERSION     DATAJL010000748.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1810)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1810)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1810
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84426"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VHN39_14275"
     CDS             complement(<1..627)
                     /locus_tag="VHN39_14275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817558.1"
                     /translation="MKLRSVALAAGAALAVLAAPAAAQPKAPAPYHAPRAVDGQPDLQ
                     GTWTNATLTPLERPVAVGERRAMTPAEVNAIEGKRAEVIREASAPTAASVDLNKLPCY
                     AANITEGGATVDCGYNAFWTDHGDAVMRVNGEPRTSMITFPANGRMPPRLPRKPGGGP
                     APVRGVYGRAGENPENQTLAERCITSFANHAGPVMLPSFYNSNYQIVQG"
     gene            744..>1810
                     /locus_tag="VHN39_14280"
     CDS             744..>1810
                     /locus_tag="VHN39_14280"
                     /inference="COORDINATES: protein motif:HMM:NF012787.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin domain-containing protein"
                     /protein_id="HEX2817559.1"
                     /translation="MAKSLKTAGGKIAALVLAGSIFGLLSGSSSLSAEGPQHVADFQL
                     SDQHYIGRRLYKMDDDKAVVLISYAAGDAAFRADAPALRALKAAYADKGVDFLIIDPR
                     LGDTREKLAADAAAAGLNIPVLFDYEQLVGESLGLNRSAEVLVLNPKTWTVAFRGPVA
                     SPSTRRALDDLVSGQAVNLGAQPARGEAIAYPQKQAAKWAEISYGRDVAPIVQAKCVV
                     CHQPGGQGPMTLTNYEQIKGFAPMIREVLSTHRMPPFQPDATVGHWAPNEGLSSDQLK
                     TLVHWIEAGAPRGPGDDPLAKVSFHAPPWKLGQPDLVLPLPVVDVPATGILPYQNPVV
                     ATNMPEGRWMRASEFRVTDKKV"
BASE COUNT          272 a          613 c          647 g          278 t
ORIGIN      
        1 gccttgaacg atctggtagt tggagttgta gaacgacggc agcatcaccg ggccagcgtg
       61 gttggcgaag gaggtgatgc agcgctcggc gagcgtctgg ttttccgggt tctcgccggc
      121 ccggccgtag acgccgcgca ccggcgccgg gccgccgccg ggcttcctgg gcaggcgcgg
      181 cggcatgcgg ccgttggccg ggaaggtgat catcgaggtg cgcggctcgc cgttcacccg
      241 catcaccgcg tcgccgtgat cggtccagaa ggcgttgtag ccgcagtcga ccgtggcgcc
      301 gccttcggtg atgttggcgg cgtagcaggg cagcttgttg aggtcgacgg acgcggccgt
      361 gggcgcgctg gcctcgcgga tgacctcggc ccgctttcct tcgatggcgt tcacctccgc
      421 tggcgtcatg gccctgcgct ccccgaccgc gaccggcctc tcgagcggcg tcaaggtggc
      481 gttggtccag gtcccctgga ggtccggctg tccgtccacc gcgcgcggcg catgataggg
      541 cgcaggcgcc ttgggctggg cggccgccgg cgcggccagg accgccaggg cggcgcctgc
      601 ggcaagagca acagacctga gcttcatcgg gtcgctcctc ggagggaaga ctggacgtga
      661 cgacagaacg gcataggatt cgtgtcagta tccggcgctt ggaaaggccg taggtcaatg
      721 cggccgccga cgggagagcg gggatggcga agtctttgaa gacggccggg ggaaagatag
      781 ccgccctggt gctggccggg tcgattttcg gcctgctgag cggctcgtcc agcttgagcg
      841 cggagggtcc gcagcacgtc gccgacttcc agctcagcga tcagcactac atcggacgcc
      901 gcctctacaa gatggatgac gacaaggccg tcgtgctcat ctcctacgcc gccggcgatg
      961 cggcgttccg ggccgacgcg ccggccttga gggcgctcaa ggcggcctat gccgacaagg
     1021 gcgtcgactt cctgatcatc gatccgcgcc tcggcgacac gcgcgagaaa ctggccgccg
     1081 acgccgcggc cgccggcctg aacattccgg tgctgttcga ctacgagcag ctggtcggcg
     1141 agagcctggg cctgaaccgc tcggccgagg tgctggtgct caatccgaag acctggacgg
     1201 tcgccttccg cggtccggtc gcgtcacctt ccacccggcg tgcgctggac gacctggtct
     1261 ccggccaggc ggtcaacctg ggcgcccagc cggcgcgcgg cgaggccatc gcctatccgc
     1321 agaaacaggc ggcgaagtgg gcggagatct cctacggccg cgacgtcgcc ccgatcgtcc
     1381 aggccaagtg cgtcgtctgc caccagcccg gcggccaggg accgatgacg ctgaccaact
     1441 atgagcagat caagggcttc gcgccgatga tccgcgaggt gctgagcacg caccgcatgc
     1501 cgccgttcca gccggacgcc accgtgggcc attgggcgcc caacgagggg ctgtcctccg
     1561 accagctaaa gaccctggtc cactggatcg aggccggcgc gccgcgcggg cccggggacg
     1621 acccgctcgc caaggtcagc ttccatgcgc cgccgtggaa gctgggccag cccgatctgg
     1681 tgctgccgct gccggtcgtc gacgtgcccg ccaccggcat cctgccctat cagaacccgg
     1741 ttgtggccac gaacatgccc gaaggccgct ggatgcgggc cagcgaattc cgggtcaccg
     1801 acaagaaggt
//
LOCUS       DATAJL010000749         1959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_84442,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000749 DATAJL010000000
VERSION     DATAJL010000749.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84442"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..114)
                     /locus_tag="VHN39_14285"
     CDS             complement(<1..114)
                     /locus_tag="VHN39_14285"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX2817560.1"
                     /translation="MAPKKEIGMQICVVGLGRMGGNIARRLMQGGHQCVVYD"
     gene            complement(114..1274)
                     /gene="tal"
                     /locus_tag="VHN39_14290"
     CDS             complement(114..1274)
                     /gene="tal"
                     /locus_tag="VHN39_14290"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004801 - transaldolase activity [Evidence
                     IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEX2817561.1"
                     /translation="MTDNPLKALTAAGQAIWLDYLHQDILSSGELKRLIADDGVTGLT
                     SNPSIFEKAIGDGDAYDARIGKLAAAGKTETKDLYEAIAIGDIQGACDQFRPTWDRLR
                     GRDGYASLEVSPELADDTGGTVAEARRLWAAVDRPNLMIKVPGTKAGAPAVRRLIGAG
                     INVNVTLLFGLQAYLDVAEAHMAGLEDLKAAGGDVARMHGVASFFVSRIDTAIDRKVD
                     ETLKTADPATAGRLKAVRGQVAIANARVAYQRYLRMILTPRWKALGQAGAAPQRLLWA
                     STGTKDPAYSDVLYIETLIGPDTVNTMPPKTLDAFRDHGRVAQTLMQDPAAAEAILRE
                     ADALGLDLDGVTDELVKDGVRLFAKAFDDLLKAVDDKRRRLGDKTSAKAAHA"
     gene            complement(1288..>1959)
                     /locus_tag="VHN39_14295"
     CDS             complement(1288..>1959)
                     /locus_tag="VHN39_14295"
                     /inference="COORDINATES: protein motif:HMM:NF014799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase C-terminal domain-containing
                     protein"
                     /protein_id="HEX2817562.1"
                     /translation="GVTGLTSNPSIFVFSHDSIGVGQDGPTHQPIEQLAALRAIPGLI
                     TLRPGDANETAEAWRAILAQTGKPACLILSRQAMPTLDRTAYASAKGVAKGGYVLADS
                     KGGAPQVILMGSGAEVGLCVAAARTLEAEGVCVRLVSMPSFDLFETQPQAYRREVLPP
                     EITARVAVEAASPLGWDRYAGPTGEILAMTGFGASAPGGDLMKRFGFTPERVVAAARR
                     QLKSS"
BASE COUNT          266 a          642 c          725 g          326 t
ORIGIN      
        1 gtcatagacg acgcattggt gcccgccctg catcagccgc cgcgcgatat tgccgcccat
       61 ccggccgagc cccacgacgc atatctgcat tccaatctcc tttttgggcg ccatcaggcg
      121 tgcgccgcct tggccgatgt cttgtcgccg agcctgcggc gcttgtcgtc cacggccttg
      181 agcaggtcgt cgaaagcctt ggcgaacaga cgcacgccgt ccttgaccag ctcgtcggtg
      241 acgccgtcga ggtcgaggcc aagcgcgtcg gcctcgcgca ggatagcttc ggcggcggcc
      301 gggtcctgca tcagggtctg ggccacacgg ccgtggtcgc ggaaggcgtc cagggtcttc
      361 ggcggcatgg tattgacggt gtccgggccg atcagggtct cgatgtagag aacatcggag
      421 taggcggggt ccttggtccc ggtggaggcc cagagcaggc gctgcggcgc ggcgccggcc
      481 tgccccagcg ccttccagcg cggtgtgagg atcatccgca ggtagcgctg gtaggcgacc
      541 ctggcgttgg cgatggcgac ctggccgcgc acagccttca ggcgcccggc cgtggcgggg
      601 tcggcggtct tcagcgtctc gtcgaccttc ctgtcgatgg cggtgtcgat gcggctaacg
      661 aagaagctgg ccacgccgtg cattctggcg acgtcgccac cggcggcttt caggtcctcg
      721 agcccggcca tatgggcctc ggccacgtcc agataggcct gcaggccgaa gagcagggtg
      781 acgttgacgt tgatcccggc gccgatcagc cggcggacgg cgggcgcgcc agccttggtt
      841 ccggggacct tgatcatcag gttcgggcgg tcgaccgcgg cccagaggcg gcgggcctcg
      901 gccaccgtgc cgcctgtgtc gtcggcgagt tcaggggaga cctccaggct ggcgtagccg
      961 tcgcggcccc tgagccggtc ccaggttggg cggaactggt cgcaggcgcc ctggatgtcg
     1021 ccgatggcga tggcctcgta gaggtccttg gtctccgtct tgccggcggc ggcgagcttg
     1081 ccgatcctcg cgtcataggc atcgccgtcg ccgatggcct tctcgaagat cgaggggttg
     1141 gaggtgaggc ccgtgacccc gtcgtcggcg atcagccgct tcagctcgcc ggagctgagg
     1201 atatcctggt gcaggtagtc gagccagatg gcctggccgg cggcggtcag ggctttcagc
     1261 ggattgtcgg tcatggcggg gacctcctca actggacttg agctggcggc gcgcggcggc
     1321 cacgacgcgc tcgggggtaa agccgaaccg cttcatcagg tcgccgcccg gcgccgaggc
     1381 gccgaagccg gtcatggcca gaatctcgcc cgtcgggccg gcgtagcggt cccagcccag
     1441 gggcgatgcg gcctcgacgg cgacgcgggc ggtgatctcc ggcggcagga cctcccggcg
     1501 ataggcctgt ggttgggtct cgaaaaggtc gaagctcggc atggagacca gacgcacgca
     1561 cacgccctcg gcctccaggg tcctggcggc ggcgacgcag aggccgacct cggccccgga
     1621 gcccatcagg atcacctgcg gcgcgccgcc tttgctatcg gccaggacat agccgccctt
     1681 ggccacgccc ttggcggagg cataggcggt gcggtccagc gtgggcatgg cctggcgcga
     1741 caggatcagg caggcgggct ttccggtctg cgcgaggatc gcgcgccagg cttcggccgt
     1801 ctcgttggcg tctcctggac gaagcgtgat caggcccgga atggccctga gcgccgccag
     1861 ttgctcgatc ggctggtggg tcggcccgtc ctggccgacc ccgatggagt cgtggctgaa
     1921 gacgaagatc gaggggttgg aggtgaggcc cgtgacccc
//
LOCUS       DATAJL010000750         2238 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96134,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000750 DATAJL010000000
VERSION     DATAJL010000750.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96134"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1038
                     /locus_tag="VHN39_14300"
     CDS             <1..1038
                     /locus_tag="VHN39_14300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEX2817563.1"
                     /translation="EGMEGLPVSVAVAPGRLSVESFARRVYPGILVAITIALAADWLS
                     SHYKAPVMLFALLFGMTFHFLHEEGRCIPGIEFASKAVLRTGVALLGARITVEQIIAL
                     GPVPIAMVVAGVTTTVLMGLLLARVLGQSRSFGVLSGGSVGICGASAALAIASVLPKT
                     KESERDVILAVVVVTTLSTIAMILYPMLVTAIGLDNQRAGLFLGGTIHDVAQVVGAGY
                     MISQKTGDVATYVKLLRVAMLLPVVGTIAFVLSRGRGGQGGMKVPLPWFLFGFAALVA
                     LNSLGFLPKLVVSSAGEVSRWCLVVAIAALGMKTSFKALIAAGWRPVAVMILETLWIA
                     GLVLGVVEFAT"
     gene            1122..1766
                     /locus_tag="VHN39_14305"
     CDS             1122..1766
                     /locus_tag="VHN39_14305"
                     /EC_number="4.2.2.n1"
                     /inference="COORDINATES: protein motif:HMM:NF013618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016798 - hydrolase activity, acting on
                     glycosyl bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEX2817564.1"
                     /translation="MGRKATLPPIGQGSLWGAVLAAAALAVAGPACAQVLDIGADGSV
                     TRYAGPAVYTDQGVRSLIPQAAQAQAAPAEVAPIEISRAIQDSAQRHAVSASLAEAVA
                     WQESRFHQQAVSPKGALGVMQLMPATARTLGVDAADLKGNVDGGVIYLGQMLKRFEGD
                     LPRALAAYNAGPEAVARYGGVPPYAETRAYVQAILGHLSAVSLPAVSLPRVGAE"
     gene            1770..2072
                     /locus_tag="VHN39_14310"
     CDS             1770..2072
                     /locus_tag="VHN39_14310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HEX2817565.1"
                     /translation="MKARAPLIAAALAYAGAAHAQTGDPAGSSPLIAALDWVQGTLLG
                     NLATSAAVIAVAVVGFLMLTGRMDWRRGITVVIGCFIIFGAVSIVAGIRSLSGGLH"
     gene            2075..>2238
                     /locus_tag="VHN39_14315"
     CDS             2075..>2238
                     /locus_tag="VHN39_14315"
                     /inference="COORDINATES: protein motif:HMM:NF016957.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HEX2817566.1"
                     /translation="MARLASDPVFAALTRPQMIGGVTYAFAVFNLVVTVEAFLITRSF
                     WALGLAAVLHA"
BASE COUNT          280 a          827 c          745 g          386 t
ORIGIN      
        1 gagggcatgg agggcctgcc ggtctctgtg gcggtcgcgc cgggccgcct gagcgtcgag
       61 agcttcgccc ggcgggtcta tccgggcatc ctcgtcgcga tcaccatcgc gctcgccgcc
      121 gactggctgt ccagccacta caaggcgcca gtgatgctgt tcgcgctcct gttcggcatg
      181 accttccact tcctgcacga ggaaggccgc tgcatccccg gcatcgagtt cgcgtccaaa
      241 gcggtgctca ggaccggcgt cgccctgctg ggcgcgcgga tcaccgtcga gcagatcatc
      301 gccctcggcc cggtgcccat cgccatggtg gtggccgggg tcacgaccac ggtcctgatg
      361 ggcctgctgc tggcccgcgt cctgggccag agccgcagtt tcggggtgct ctccggcggc
      421 tccgtgggca tctgcggcgc ctcggcggcc ctggccatcg cctcggtcct gcccaagacc
      481 aaggaaagcg agcgcgacgt gatcctggcc gtcgtcgtgg tcaccacgct ctcgaccatc
      541 gccatgatcc tctacccgat gctggtcacc gccatcgggc tggacaacca gcgggccggc
      601 ctcttcctcg gcggcaccat ccacgacgtc gcccaggtgg tgggcgcggg ctacatgatc
      661 tcccagaaga ccggcgacgt ggcgacctat gtgaagctct tgcgggtcgc gatgctcctg
      721 cccgtcgtcg gaaccatcgc attcgtcctg tctcgcggcc ggggcggtca gggcggcatg
      781 aaagtgccgc tgccctggtt cctgttcggc ttcgccgccc tcgtggcctt gaacagcctg
      841 ggcttcctgc cgaaactcgt ggtctccagc gccggcgagg tctcccgctg gtgcctggtg
      901 gtggctatcg ccgcgctcgg catgaagacc tccttcaagg ccctgatcgc agcgggctgg
      961 cgcccggtcg cggtgatgat cctggagacc ctgtggatcg cgggcctggt cctcggcgtc
     1021 gtcgagttcg cgacctgaac cgtgaaccac atcgcgacaa tgtggtctgg ccccccttcg
     1081 ccaagatggg ctaacgtctg agcctcgggt tggggcgacg tatggggcgc aaggccactc
     1141 ttccaccgat cggccaaggt tcgctttggg gggccgtgct cgccgcggcg gcgctggccg
     1201 tggccggccc ggcctgcgcc caggtgctgg acatcggcgc ggacggcagc gtgacgcgct
     1261 acgcggggcc cgcggtctac actgaccaag gcgtgcgttc gctgatcccg caggccgccc
     1321 aggcccaggc cgcccccgcc gaggtcgccc ccatcgagat aagccgggcc attcaggact
     1381 ccgcccagcg ccatgccgtc agcgcgtccc tcgccgaggc ggttgcgtgg caggaatcgc
     1441 gcttccacca gcaagctgtc tcgcccaagg gcgcactcgg ggtcatgcag ctgatgcccg
     1501 ccaccgcccg caccctcggc gtcgacgccg ccgacctgaa gggcaacgtc gatggcgggg
     1561 tgatctatct cggccagatg ctgaagcgtt tcgagggcga cctgccgcgc gcgctggccg
     1621 cctacaacgc cggacccgag gccgtggccc gctacggcgg tgtcccaccc tatgccgaga
     1681 cccgggccta tgtgcaggcc atcctcggtc acctgagcgc cgtgagcctt cccgccgtca
     1741 gcctgccccg ggtgggcgcg gagtaaccca tgaaagcacg tgcgcccctc atcgcagccg
     1801 ccctggctta cgccggcgcc gcccacgccc agacgggcga tccggccggc tcgtcccccc
     1861 tgatcgccgc gctcgactgg gtgcagggca ccctgctcgg caacctcgcc accagcgccg
     1921 cagtgatcgc ggtcgccgtg gtgggcttcc tgatgctcac cgggcggatg gactggcgcc
     1981 gcgggatcac cgtggtcatc ggctgcttca tcatcttcgg cgccgtctcc atcgtggctg
     2041 gcatccggtc gctctccggc gggttgcact agccatggcg cggctcgcct ccgatccggt
     2101 cttcgcggcc ctcacccggc cccagatgat cggcggcgtc acctacgcct tcgcggtgtt
     2161 caacctcgtg gtgaccgtcg aggccttcct gatcacccgc tcgttctggg cgctgggtct
     2221 ggccgcggtc ctgcacgc
//
LOCUS       DATAJL010000751         4293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_70150,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000751 DATAJL010000000
VERSION     DATAJL010000751.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4293
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70150"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..470
                     /locus_tag="VHN39_14320"
     CDS             <1..470
                     /locus_tag="VHN39_14320"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2817567.1"
                     /translation="LVVTACGLAHGVIPGMVERRRGSIVNVGSLAAFAPGVAGHSLYP
                     GAKSLMVSWSQSLAAELKGTGVRVTVTCPGFTLTEFAEANGTKGIMDAAPRRLFQTAE
                     QVVATTMAANDRGQVVVVPGLHNKIAATILRYVPQPLLIAILSRASAKYHLTD"
     gene            481..2118
                     /locus_tag="VHN39_14325"
     CDS             481..2118
                     /locus_tag="VHN39_14325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEX2817568.1"
                     /translation="MAHFDVVIIGSGAGGGTLAQRLAASGKTILILERGEQLPREAEN
                     WSPRAVFIQHRYRTQEQWYDKTGKPFHPNTHYWVGGNTTFYGAALMRLRGRDFEEVIH
                     EGGISPAWPVSLTDMAPYYAEAETLWRVHGSRGDDPTEEGNEPPYAYASVHDDPGIAQ
                     LRTHWQGQGWRPFSLPLGINLDQAHPVTSACIKCKTCGGYPCLLKAKSDARSIAIEPL
                     MDLPNVTLLTGRKVTRLETDPAGKSVTEVVCQTEQGEERWTGDIVVLAAGAANSAAVL
                     LASANAAHPNGLANGSDQVGRNYMFHTLTAMVSLTAAHVDITFPKTLACNDFYWGDPA
                     GGFDKPMGHIQLLEYMSGQTLEGQVSDWLPPGLVPDVISEGIAERMLSMLVISEDLPL
                     PENRVRVTPDGRINLDYTYNNLEGHERLVGKLHASLDGFVDHAHPISQHHFEMSSLLP
                     LYGTAHQAGTVKFGADPASSVLDPWCKAHELDNLYVVDTSFFPSIAAVNPTLTTVANA
                     MRVGDHLLERLGKSKKPPAKAAGVRRPKSHKAGESLA"
     gene            2252..4180
                     /locus_tag="VHN39_14330"
     CDS             2252..4180
                     /locus_tag="VHN39_14330"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817569.1"
                     /translation="MAAAIAVSLAGSARAGESARAEDLGGAADTTIEKLRDFSLEDLA
                     NLKVTSVSKRGEPLGEAASSIFVITHDDIVRSGSTSVPEILRLAPNLEVTQTSASGYV
                     ITARGFNGNPGAQSFSNKLLVLIDGRSVYSPLFSGVYWDMQDVLPQDIERIEVISGPG
                     ATLWGANAVNGVINIITRPASQTQGGLVDVEAGGQGRQLGLRYGGKASDDLTWRVYAR
                     GVADDAERTAAGAKAGDPWSRVQGGFRMDWAARPADLFTFQGDAYRGSEDHPGAGDEK
                     IAGRDLTARWDHTSASGSDLQVEAYYDRAGRATEGGGGKFRVNTFDIEAQDSFTLGER
                     QQIVWGGGLRTSRYRIDGTQTLFFKPASGSLNLADLFAQDTLTLAPTVRLTVGLKVED
                     DPYVSAELLPNLRLAWSPSEALTLWSAVSKAVRSPTPFDRDVVEKLGPTAPPQLIGDA
                     DFQHEKLTAFEAGARFHPAPVATVSLSTFYNDYDQLRTIELSPGGKLPLLWGNMLEGS
                     TYGVEAWGEVRVQPWWRMSGGFSTLHEDLKFKPGATGIVGLAQNGQDPKFQASLKSSM
                     DLGRRFTLDGDLRYVGALPSNLVPAYTELNARLGWNITDRLQFSVSGRNLLHARHVEY
                     PGGDAIQRTVSADLQWRF"
BASE COUNT          706 a         1438 c         1494 g          655 t
ORIGIN      
        1 ccctggtggt gaccgcctgc ggcctggcgc acggggtgat cccgggcatg gtggagcgcc
       61 ggcgcgggtc gatcgtcaat gtgggctcgc tggcggcgtt cgcgcccggc gtggcgggcc
      121 actcgctcta tccgggcgcc aagagcctga tggtcagctg gagccagtcg ctggccgcgg
      181 agctgaaggg gacgggcgtc agggtgacgg taacctgccc gggcttcacc ctcaccgaat
      241 tcgccgaggc caatgggacc aaggggatca tggatgcggc gccgcggcgg ctgttccaga
      301 cggccgaaca ggtcgtggcg acgacgatgg ccgccaacga tcgcgggcag gtggtcgtgg
      361 tccctggcct ccacaacaaa atcgccgcaa caatcctgcg ctatgtcccg cagccgctgc
      421 tgatcgcgat cctgtcgcgc gcctcggcga agtatcacct gacggattag gagcaggccc
      481 ttggcgcact tcgacgtggt gatcatcggc tcgggcgccg gcgggggcac gctggcccag
      541 cggctggcgg cctcgggcaa gaccatcctg atcctggagc gtggcgagca gctgccgcgc
      601 gaggcggaga actggagtcc cagggcggtc tttatccagc accgttaccg cacccaggag
      661 cagtggtacg acaagaccgg caagcccttc cacccgaaca cccattattg ggtcggcggt
      721 aacaccacct tctatggcgc ggcgctgatg cggctgcgcg ggcgcgactt cgaggaggtg
      781 atccacgagg gcgggatctc gccggcctgg ccggtcagcc tgacggacat ggcgccctac
      841 tacgccgaag ccgagacgct gtggcgggtg cacgggagcc ggggcgacga cccgaccgag
      901 gaggggaacg agccgcctta cgcctacgcc tcggtgcatg acgatccggg gatcgcgcag
      961 cttcggaccc attggcaggg gcagggctgg cggccgttct cgctgccgct ggggatcaac
     1021 ctggaccagg cccatccggt gacctcggcc tgtatcaagt gcaaaacctg cggcggctat
     1081 ccgtgcctcc tgaaggccaa gtcggatgcg cgctcgatcg ccatcgagcc cctgatggac
     1141 ctgcccaatg tcaccctgct gaccgggcgc aaggtgacgc ggctggagac cgacccggcc
     1201 ggcaagtcgg tgaccgaggt ggtctgccag accgagcagg gcgaggagcg ctggaccggc
     1261 gacatcgtgg tgctggcggc cggcgcggcc aattcggctg cggtgctgct ggcttcggcc
     1321 aacgcggcgc acccgaacgg cctcgccaac ggttcggatc aggtggggcg caactacatg
     1381 ttccacaccc tgaccgcgat ggtctcgctg accgcggcgc atgtggacat caccttcccc
     1441 aagacgctgg cctgcaacga cttctactgg ggcgacccgg ccggcgggtt cgacaagccc
     1501 atggggcata tccagctgct ggaatacatg tccggccaga ccctggaggg ccaggtctcc
     1561 gactggctgc cgccggggct tgtcccggac gtgatttccg agggcatcgc cgagcggatg
     1621 ctgtcgatgc tggtgatctc cgaggacctg ccgctgccgg aaaaccgggt gcgggtcacg
     1681 cctgacgggc ggatcaacct cgactacacc tacaacaacc tggaaggcca cgagcggctg
     1741 gtgggtaagc tgcacgcctc gctggacggc ttcgtcgacc acgcccaccc gatcagccag
     1801 caccatttcg agatgagcag cctgctgccg ctctatggga cggcccacca ggccgggacc
     1861 gtgaagttcg gggccgatcc cgcgagttcg gtgctggacc cctggtgcaa ggcccatgag
     1921 ctcgacaacc tctatgtggt ggacaccagc ttcttcccct cgatcgccgc ggtgaacccg
     1981 accctgacca cggtggccaa cgccatgcgg gtgggcgacc acctgctgga gcggctgggc
     2041 aagtcgaaga agcctcccgc caaggccgcc ggcgtgaggc ggccgaagtc gcacaaggcc
     2101 ggcgagagcc tcgcttagca tatgatatcg gcgggaaccc gattcacgga atagcgttgc
     2161 cgtagtggga cgccccggcc gcagacgccg ggcgcgaagc tgcgctgccg gggggttggg
     2221 cgagttggga tcatatgggt ttagcgtcgg attggccgca gcgatcgccg tgagcctggc
     2281 cggctccgcg cgcgccgggg agtcagcacg agcagaagat ttagggggcg cggccgatac
     2341 gacaatcgag aagctcaggg atttttcgct ggaggacctg gcgaacctga aggtgacctc
     2401 ggtctccaaa cgcggcgagc cgctcgggga agcggcctcc tcgatctttg tcatcaccca
     2461 cgacgacatc gtccgatccg gctccacgag cgtgccggag atcctgcggc tggcgcccaa
     2521 tcttgaagtc acccagacca gcgccagcgg ctatgtgatc acggccaggg gcttcaacgg
     2581 caatcccggc gcccagagct tttccaacaa gctcctggtg ctgatcgacg ggcgcagtgt
     2641 ctattccccg ctgttctcgg gcgtctactg ggacatgcag gacgtcctgc cccaggacat
     2701 cgagcggatc gaggtgatca gcggccccgg cgccacgctt tggggcgcca acgccgtcaa
     2761 tggcgtcatc aacatcatca cccgccccgc cagccagacc cagggcggcc tcgtggacgt
     2821 ggaggccggc ggccagggtc gccagctcgg actccgctac ggcggcaagg cctccgacga
     2881 cctgacctgg cgggtctatg cgcgcggcgt ggcggatgac gccgaacgca ccgcggccgg
     2941 ggccaaggcc ggggacccct ggtctcgggt ccagggcggt ttccgcatgg actgggccgc
     3001 gcgcccggcg gacctcttca ccttccaggg cgacgcctac cgcggttctg aagaccatcc
     3061 gggcgcggga gacgagaaga tcgccgggcg cgacctcacg gcccgttggg accatacctc
     3121 cgcgagcggg tcggacctgc aggtcgaagc ctactatgac cgcgccgggc gagccaccga
     3181 agggggcggc ggcaagttca gggtgaacac cttcgacatc gaggcccagg acagcttcac
     3241 cctgggcgaa cgccagcaga tcgtgtgggg cggcgggctg cgcaccagcc gctaccggat
     3301 cgacggcacg cagacgctgt tcttcaaacc cgcctcgggc agcctgaacc tggcggacct
     3361 gttcgcccag gacaccctca cgctcgcgcc gacggtgcgg ctgaccgtgg ggctgaaggt
     3421 tgaggacgat ccctacgtca gcgccgaact cctgccaaac ctgcgtctgg cctggtcgcc
     3481 cagcgaggcg ctgacgctgt ggagcgcggt ctcgaaggcg gtgcgctcgc caaccccctt
     3541 cgaccgcgac gtggtggaga agctggggcc gaccgcgccg ccgcagctga tcggcgacgc
     3601 ggacttccag cacgagaagc tgaccgcctt cgaggccggc gcccgctttc atccggcgcc
     3661 cgtcgcgacc gtctcgctgt cgacgttcta caacgactac gatcagctgc ggaccatcga
     3721 gttgtctccc ggggggaagc tgccgctgct gtggggcaac atgctggaag gctcgaccta
     3781 cggcgtggag gcctggggcg aggtccgggt tcagccctgg tggcggatgt cgggcggctt
     3841 cagcaccttg catgaggacc tgaagttcaa gccgggggcg accggtatcg tcggcctggc
     3901 gcagaatggg caggacccga aattccaggc gtcgctcaaa tcctcgatgg atctcggccg
     3961 gcggttcacc ctggacgggg acctgcgcta tgtcggcgcg ctgccgagca acctcgtgcc
     4021 cgcctatacc gagctgaacg cccggctcgg ctggaacatc accgatcgtc tgcaattttc
     4081 ggtgtcgggc cgcaacctgt tgcacgcgcg gcacgtggag taccccggcg gcgacgccat
     4141 ccaacgcact gtctccgccg acctccaatg gcgcttttga gcaggcagca accgatgtcg
     4201 cggcgccgcg ccaggctggc cggcctggcg gccctgtgcc tgggcgctac agcgccggcg
     4261 caggcggagc cgtcgctgga gctggccgtc aag
//
LOCUS       DATAJL010000752         1894 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_63768,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000752 DATAJL010000000
VERSION     DATAJL010000752.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63768"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..869)
                     /locus_tag="VHN39_14335"
     CDS             complement(<1..869)
                     /locus_tag="VHN39_14335"
                     /inference="COORDINATES: protein motif:HMM:NF012711.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2817570.1"
                     /translation="MDEMISPEMISLGAKLAQHARFQPNAPAVTCGEETLSYVQLHKR
                     TNRVARGLAALGVKHGDLVTLGLPNSIGFVEACYAIWKLGATPQPVSFRLPKGELEAI
                     MELAATPIVIADFKHEIDRPLVGVAEIAAMSDDESDLPDATAPISKAPTSGGSTGRPK
                     LILSGQPGVTFKETPEIGGWRLTPDDIAVLPAPLYHNAGFGMMMAAMSQGCHLVVMPR
                     FDPEATLAEIEKRRATWVYVVPTMMNRIWRLPDATREKYDLSSLETLWHLAAPCPAFL
                     KEAFIRWIGPEKV"
     gene            1054..1476
                     /locus_tag="VHN39_14340"
     CDS             1054..1476
                     /locus_tag="VHN39_14340"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX2817571.1"
                     /translation="MMDGNVAEHFAKRQEGTLPGDLGIEWDEVATGRASGRFIVRRGH
                     MAANGFLHAASVIALVDSACGYACVASLPEGATGFTTIELKANYLGTAAEGETVACAA
                     RLAHGGRMTQVWDAEAVNQTTGKTMALFRCTQMVLWPR"
     gene            complement(1473..1823)
                     /locus_tag="VHN39_14345"
     CDS             complement(1473..1823)
                     /locus_tag="VHN39_14345"
                     /inference="COORDINATES: protein motif:HMM:NF016854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HEX2817572.1"
                     /translation="MAHDPKALQILLAAAAPPDLELVFKPMFGGILAYAYGKPLASLS
                     DVGLALKASGALNAEFLSVPGAVALRYEPDAPASKTYVVVPDTLLSDRAALRGWIVRA
                     AAGVAAAPAKKAKR"
BASE COUNT          302 a          678 c          612 g          302 t
ORIGIN      
        1 atcactttct ccggcccgat ccagcggatg aaggcctcct tcaggaaggc cgggcagggc
       61 gccgccagat gccagagggt ctccagggac gagaggtcgt atttctcccg cgtggcgtcc
      121 ggcaggcgcc agatgcggtt catcatggtc ggcaccacat agacccaggt cgctcggcgc
      181 ttctcgatct cggctagcgt cgcctcggga tcgaaccgcg gcatcaccac caggtggcag
      241 ccctgactca tggccgccat catcatgccg aagccggcgt tgtggtagag cggcgccggc
      301 aggaccgcga tgtcatccgg cgtcagccgc cagcccccga tctccggcgt ctccttgaac
      361 gtcaccccag gctgccccga caggatcagt ttcggtcgcc cggtcgagcc gccgctcgtc
      421 ggcgccttgg agatcggcgc ggtggcgtcg ggcaggtcgc tctcgtcgtc ggacatcgcc
      481 gcgatctcgg ccacccccac cagcggccgg tcgatctcgt gcttgaagtc ggcgatgacg
      541 atgggcgtcg cggccagttc catgatcgcc tccaactcgc ccttcggcag gcggaacgac
      601 accggctgtg gcgtcgcccc cagcttccag atcgcgtagc aggcctccac gaacccgatg
      661 gagttcggca ggccgagcgt caccaggtcc ccgtgcttga cccccagcgc cgccaggccg
      721 cgcgcgacgc ggttcgtgcg tttgtgaagc tggacgtagc tcagcgtctc ctccccgcag
      781 gtcaccgcag gggcgttcgg ctgaaaccgg gcgtgctgcg ccagcttcgc gcccaatgaa
      841 atcatttcgg gggaaatcat ctcgtccatc gtcgcgtccc aaaatgtcgg cccaagaact
      901 taagaggggg gtctaacgcc cagctcactg aaatcgtcga atccgccgtt atgatcagcg
      961 ggcggccaca ttccccatcg gcgatggcgt tcgcaaggcc tcttggtttc cgcatccagg
     1021 ctccttagct ctgccgcaga ggagacgacg atcatgatgg acggcaatgt ggcggagcat
     1081 ttcgccaagc ggcaggaagg cacgctgccc ggcgacctcg gcatcgagtg ggacgaggtg
     1141 gccaccggcc gcgcgtccgg ccgcttcatc gtgcggcgcg gccacatggc ggccaacggg
     1201 ttcctgcatg ccgcctcggt gatcgcgctg gtggatagcg cctgcggcta cgcatgcgtg
     1261 gcgagcctgc ccgaaggcgc caccggcttc accaccattg agctcaaggc caactacctg
     1321 ggcaccgccg ccgagggcga gaccgtcgcc tgcgccgccc gcctggccca tggcggccgc
     1381 atgacccagg tctgggacgc cgaggccgtc aaccagacca ccggcaagac catggccctc
     1441 ttccgctgca cccagatggt gctctggccg cgctagcgct tggccttctt cgccggcgcc
     1501 gccgccacgc ccgccgccgc cctgacgatc cagccgcgca gggccgcgcg gtcgctcagc
     1561 agggtgtccg gaaccaccac ataggtcttg ctggccggcg cgtcgggctc atagcgcagg
     1621 gccacggccc ccgggacgct gaggaattcc gcgttcagcg cgcctgacgc cttcagcgcc
     1681 aaccccacgt ccgacagcga ggccagcggc ttgccgtagg cataggccag gatcccgcca
     1741 aacatcggct tgaacaccag ctccagatcc ggcggcgcgg cggcggcgag gaggatctgc
     1801 agggctttgg gatcgtgggc catctcagtg ccccccttca gtgttcagac caggccgcca
     1861 cgtcatagcc gtcgaggtcg cggaagtgaa accg
//
LOCUS       DATAJL010000753         1935 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96159,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000753 DATAJL010000000
VERSION     DATAJL010000753.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96159"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..318
                     /locus_tag="VHN39_14350"
     CDS             <1..318
                     /locus_tag="VHN39_14350"
                     /inference="COORDINATES: protein motif:HMM:NF014476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817573.1"
                     /translation="WLSDGAHVNIVGSSRLGPTEVDDDLVVRARYFADSRANVLAQGT
                     EFRRAVESGRIDDSHMAGEIGEVLAGKVEGRRSASEVTAYKSLGSVAQDLWAGWGVFR
                     ALS"
     gene            386..>1935
                     /locus_tag="VHN39_14355"
     CDS             386..>1935
                     /locus_tag="VHN39_14355"
                     /inference="COORDINATES: protein motif:HMM:NF013123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DPP IV N-terminal domain-containing protein"
                     /protein_id="HEX2817574.1"
                     /translation="MTFQIPGALRLSIAALSVATMLTPWPASAAPRALAHDFTIEQVL
                     SAPFPSGLVAAEQGGRVAWVFDKDGSRNVWVAEPGAGGAYAARAISAYVGDDGYDLGE
                     LDWTPDGRQVVYSRGGSLEGGGPVNVRSRPSGAVGQEIWVASVDGTAPRRIGPGHSAA
                     TSPRGDAVAYIQADQIWLAPLAAGGQPTQLIHDRGRSGQIAWSPDGARLAFVSSRGDH
                     SLVGVYDLAAKTIVWLSPSVDRDMAPTWSPDGRSLAFVRMAASHAGLFADSREAQPWS
                     LWVGSPVTGGATAVWTASPGPGSAFHPLESETTLMWTADGRLVFPWERSGWLQLYSVF
                     PVGGAPTRLTHGDFEVFSASLSADRKRIVYSSNEGDIDHRHVWELAAGAAAPRQLTRG
                     ATIEDSPAVTSGGQVVALHGDWRKPIRPVSLAASGQPVELAPAAMPADFPGARLTEPK
                     PVVFDSPDGLKIHGQLFLPPAGRPARGPAILFFHGGPTRQMLLGWHPMDAYAYMYGLN
                     QYLADEGYV"
BASE COUNT          261 a          708 c          672 g          294 t
ORIGIN      
        1 tggctctccg acggcgctca cgtgaacatc gtcggctcca gccgactcgg tccgaccgag
       61 gtcgacgacg atctggtcgt gcgcgcccgc tacttcgccg acagccgcgc caatgtcctg
      121 gcccagggga cggagttccg ccgggccgtg gagtccgggc gtatcgacga cagccacatg
      181 gccggcgaga tcggcgaggt gcttgcgggc aaggtcgaag gccgccggtc cgcctcggag
      241 gtcaccgcct acaaatcgct tggatccgtc gcccaggacc tgtgggccgg ctggggcgtc
      301 ttccgagccc tttcatgaac gccgcagaca gcgccgactc cgcgccgctc cgctgcgcaa
      361 accgctcagt ccttgaaggt ttccgatgac gtttcagatc ccgggcgcct tgcgcctgtc
      421 catcgcggcc ctgtccgtcg caacgatgct gacgccgtgg ccggcgagcg ccgcgccgcg
      481 cgcgctggcc cacgacttca cgatcgagca ggtccttagc gcgccattcc cctccggcct
      541 agtggccgcc gagcaaggcg gccgtgtggc atgggtcttc gacaaggatg gcagccgcaa
      601 cgtctgggtc gccgagcctg gcgcgggcgg ggcctatgcc gcacgggcaa tcagcgccta
      661 tgtgggcgac gacggctatg accttggcga actggactgg acccccgacg gccggcaggt
      721 ggtctattcg cggggcggca gcctggaggg cggcggtccg gtgaacgtcc gcagccgtcc
      781 ctccggcgcg gtcggccagg agatctgggt cgcctcggtc gacgggaccg cgccgcgccg
      841 gatcgggccc gggcactctg ccgccacgtc cccgcgcggc gacgccgtcg cctacatcca
      901 ggccgatcag atctggctcg cgccgctggc ggcgggcgga cagccgacac agctgatcca
      961 cgatcgtggg cgcagcgggc agatcgcctg gtcgcctgac ggcgcgcggc tggcgttcgt
     1021 cagttcgcga ggcgaccaca gcctcgtcgg tgtctacgac cttgccgcca agaccatcgt
     1081 gtggctcagc cccagcgtcg accgggatat ggccccgacg tggtcgccgg acggccgaag
     1141 cctcgccttc gtccgcatgg ccgccagcca cgcgggcctc ttcgcagaca gccgtgaggc
     1201 gcagccctgg tcactgtggg tcggcagccc ggtcacgggc ggggcgaccg ccgtctggac
     1261 cgcgagcccc gggccgggaa gcgcgtttca tccgctggag tccgagacca cgctgatgtg
     1321 gacggccgac ggcaggctgg ttttcccgtg ggagcgcagc ggctggctgc agctctattc
     1381 ggtcttcccc gtgggcggcg cgccgacccg gctcacccac ggcgatttcg aggtcttcag
     1441 cgccagtctg agcgccgacc gcaagcggat cgtctattcc tccaacgagg gcgacatcga
     1501 tcatcggcac gtctgggagc tcgcggccgg cgcggcggcg cctcgccagc tgacccgcgg
     1561 ggcgaccatc gaagacagtc cggcggtgac cagcggcggc caggtggtcg ccttgcacgg
     1621 ggactggcgc aagccgatcc gccccgtctc gctggccgcc tcgggccagc cggtcgagct
     1681 cgcgcccgcg gccatgcccg ccgacttccc aggcgcccgg ctcactgagc ccaagccggt
     1741 ggtcttcgac tcgcccgacg gcctgaagat ccatggccag ctgttcctgc cacccgcggg
     1801 acgtccggcg cggggccccg ccatcctctt cttccacggc ggcccgaccc ggcagatgct
     1861 gctcggctgg catccgatgg acgcctacgc ttacatgtac ggcctgaacc agtatctcgc
     1921 cgacgagggc tatgt
//
LOCUS       DATAJL010000754         3124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96160,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000754 DATAJL010000000
VERSION     DATAJL010000754.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96160"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..614
                     /locus_tag="VHN39_14360"
     CDS             <1..614
                     /locus_tag="VHN39_14360"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817575.1"
                     /translation="VQDTTLNTGSLKTTGVDLNVNYRTELSTLGLGDNGSVSVAMVGT
                     WLNELDTQPLPGGPTYNCKGMEGTTCGVPAPEWRHKLRVTWNTPYAYGDWVKSLSLSA
                     QWRYFGKVTLDAYSSDPQLNNPGLQYETDRTFHATSYLDLTANFTVHNNLNFRVGVNN
                     VFDKDPPLTGSSNCPAGPCSGNSYPQVYDALGRFVFVGLSADF"
     gene            complement(611..1054)
                     /locus_tag="VHN39_14365"
     CDS             complement(611..1054)
                     /locus_tag="VHN39_14365"
                     /inference="COORDINATES: protein motif:HMM:NF015444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPC domain-containing DNA-binding protein"
                     /protein_id="HEX2817576.1"
                     /translation="MRTYAFRLTPGTDLRAELMRLTEQHALRAGCILSCVGSLSHARL
                     RMPGAIGDPEVIATWAEPMEILSLTGTLCPDGLHVHISLSRRDGSCLGGHLVQGCLIN
                     TTAELVIGEAPQVEFHRPLDPATGYNELSVQPKAGGASTSSGRGP"
     gene            1224..1778
                     /locus_tag="VHN39_14370"
     CDS             1224..1778
                     /locus_tag="VHN39_14370"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEX2817577.1"
                     /translation="MTTLDPKTALIVIDLQKGIVSRPSAHPIDGVVKHVGALTEAFRG
                     RGSPVVLVNVAGGARGRTEQPRPHMDLPADWTDLIPELNRQPQDHVVTKRTPGAFTNT
                     GLEAHLRALGVTQVVIVGVATSNGVEVTARQAYELGFNVTLATDAMTDMAAEAHAYSV
                     TRIFPKIGETGTTQEIIGLLEKSA"
     gene            1781..2110
                     /locus_tag="VHN39_14375"
     CDS             1781..2110
                     /locus_tag="VHN39_14375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817578.1"
                     /translation="MDWLHDLAYLFGGAFLANGVPHFVSGVMGQPFQSPFAKPSGQGL
                     SSSSVNVLWGFANFVVAYLLIARVGNFDPHAADHIIAVGVGVLLIGVMSARLFGRFHG
                     GNSPTGS"
     gene            complement(2169..2366)
                     /locus_tag="VHN39_14380"
     CDS             complement(2169..2366)
                     /locus_tag="VHN39_14380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817579.1"
                     /translation="MTRLAPRVNVWLAASGWLVGAVLFIRFAQILPCCQVPPLETALR
                     SSICGESFVNPCPRYADAAPR"
     gene            2646..>3124
                     /locus_tag="VHN39_14385"
     CDS             2646..>3124
                     /locus_tag="VHN39_14385"
                     /inference="COORDINATES: protein motif:HMM:NF012707.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEX2817580.1"
                     /translation="MDVRADGKARRAREVAAGLLLALAIIAAGAFLPARTPGQTAASP
                     AELKVATNGSWRPQSYLDDHNQLVGFDIDVAREIARRLGRTATFDTPDFATMTGGHWH
                     GRWDIAVGSVTPTRARAQVVDFAGVYYYSPYVFVVNAASPIRRRADLDGRKIGVETGT
                     "
BASE COUNT          544 a         1031 c         1035 g          514 t
ORIGIN      
        1 tcgtgcagga caccacgctg aacaccggtt ctctgaagac caccggcgtc gatctgaacg
       61 tcaactaccg cacggagctg tcgacgctcg gcctgggcga caacggcagc gtctcggtcg
      121 ccatggtggg cacctggctc aacgagctgg acacccagcc cctgccgggc ggcccgacct
      181 acaactgcaa gggcatggag ggcacgacct gcggcgtccc ggctccggaa tggcgccaca
      241 agctgcgcgt cacctggaac acgccctacg cctatggcga ctgggtgaag agcctgagcc
      301 tttcggccca atggcgctac ttcgggaagg tgacgctcga cgcctactca agcgacccgc
      361 agctgaacaa ccccggcctg cagtacgaga ccgaccggac gttccacgcg accagctacc
      421 tggacctgac ggcgaacttc acggtccata acaacctgaa cttccgggtg ggcgtgaaca
      481 acgtgttcga caaggacccg ccgctcaccg gctcctcgaa ctgcccggcc ggcccctgca
      541 gcggcaacag ctacccgcag gtctacgatg cgctcggccg cttcgtcttc gtgggcctct
      601 ccgccgactt ctaaggccct cgtccggatg acgttgacgc gccgccggcc ttcggctgga
      661 cgctgagttc attgtatccg gtggcggggt ccagcggccg gtgaaactcg acctggggcg
      721 cctcgccgat caccagctcc gcggtggtgt tgatgaggca gccctggacg agatgcccgc
      781 cgaggcagga tccgtcgcgt cgcgagaggc tgatgtggac gtgcaggccg tcgggacaga
      841 gggttccggt caaggacagg atctccatgg gctcggccca tgtcgcgatg acctcgggat
      901 cgccgatggc gccgggcatc ctgaggcgcg cgtgtgagag gcttcccacg caggaaagta
      961 tgcagccggc gcgaagggcg tgctgctcgg tgagacgcat cagttccgct ctcagatcgg
     1021 tcccgggcgt caggcggaag gcgtaggtgc gcatggtcca aacctatggc atcgcgctgg
     1081 cggcgaaaga agcggaggaa ttcagggaca ggaatttggg ggcacgcacc acttcgcagt
     1141 cgccgccacg cggaaggtgg taggtgtccc cgcttacggc tttgccgcca tccagatcac
     1201 ctgaaaggga aagccccgtg accgtgacca ccctcgaccc gaagaccgcg ctcatcgtca
     1261 tcgatcttca gaagggcatc gtttcgcgcc cgagcgcgca tcccatcgac ggtgtggtga
     1321 agcacgtcgg cgcgttgaca gaggcctttc gcggacgggg ctcgccggtc gtgctggtca
     1381 atgtcgccgg cggcgcccgg ggccggacag agcagccgag accccatatg gatcttccgg
     1441 ccgactggac cgatctcatc cccgagctga accggcagcc gcaggaccat gtggtgacga
     1501 aacgcacgcc gggcgccttc accaataccg gtcttgaagc ccatctgagg gcgttggggg
     1561 tcacccaggt cgtgatcgtc ggcgtcgcca ccagcaacgg cgtcgaggtc accgcacgcc
     1621 aggcctatga gctcggcttc aacgtcacac tggcgaccga cgccatgacc gacatggccg
     1681 ccgaagccca cgcctacagc gtcacacgaa tttttccgaa aatcggcgag accggcacga
     1741 ctcaggagat catcggtctt ctggaaaaga gcgcctgatc atggattggc ttcacgacct
     1801 ggcctacctg ttcggcggcg catttctggc gaatggcgtt ccgcatttcg tcagcggcgt
     1861 gatggggcag ccctttcaga gcccgttcgc caagccgtcg ggtcagggtc tttcatcctc
     1921 gagcgtgaac gtgctctggg ggtttgcgaa cttcgtcgtc gcctaccttc tcatcgcgcg
     1981 cgtgggaaat ttcgatccgc acgccgccga tcacatcatc gccgtgggcg tgggcgtcct
     2041 gcttatcggt gtgatgtccg cgcgtttgtt tggacggttc cacggcggca attcgcccac
     2101 gggctcgtga cggcattggg gtgacagggc aggacttgcg gctccatggg ctgccgcgtc
     2161 ccgccggctc aacggggcgc ggcgtcggcg tagcgggggc aggggttcac gaagctctcg
     2221 ccgcagatgc ttgagcgcag ggcggtctcc agcggcggaa cctggcaaca gggcagaatc
     2281 tgcgcgaagc ggatgaacag cacggcgccg accagccatc cggacgccgc aagccacacg
     2341 ttcacgcgcg gcgccaacct ggtcatgccc ctcagctccg cagcccccgc cgcgaacgcg
     2401 ccttcagcgc aagatcaagc cggaaactcc atgggtttga ttgccttgcc aagtcccttt
     2461 tctgaaatat ttgcgacaaa ctacagtaga gcttagcaag cttaagcatt ggaggtccgc
     2521 gttgcgcgga ttcattcggg tgggtgtggc cgttcctttc gcgtcgggcg ggcgccgccc
     2581 tcaagggccg cagcccgcgg aataggaatc gcggcggcgg ccaaagcggg gtagcggtcg
     2641 aggccatgga tgtccgggcc gacggaaagg cgcgcagagc gcgcgaggtt gccgccggtc
     2701 tcctgctggc gctggcgatc atcgccgccg gcgcgttcct gccggcaagg acccctggcc
     2761 agacggcggc gtcgcccgcg gagctcaagg tcgcgaccaa cggcagctgg cggccgcaga
     2821 gctatctgga cgatcacaac cagctggtcg gcttcgacat cgacgtcgcc cgcgagatcg
     2881 cgcgccggct gggccggacc gcgacgttcg acacccctga cttcgccacc atgaccggcg
     2941 gccactggca cggacgctgg gacatcgcgg tgggatcggt gacgccgacc cgggcacgcg
     3001 cgcaggtcgt cgatttcgcc ggggtctact actacagccc ctatgtgttc gtggtgaacg
     3061 cggccagtcc gatccgtcgg cgcgccgacc tggacggcag gaagatcggc gtcgagaccg
     3121 gcac
//
LOCUS       DATAJL010000755         4586 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108751,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000755 DATAJL010000000
VERSION     DATAJL010000755.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4586
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108751"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1016)
                     /locus_tag="VHN39_14390"
     CDS             complement(<1..1016)
                     /locus_tag="VHN39_14390"
                     /inference="COORDINATES: protein motif:HMM:NF024742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817581.1"
                     /translation="MSSPVPNPPPLGFPLKLTYGVGSVAYGVSAGALSATVLVYYFNQ
                     VMHIPAVWAGAAILVSLVADVILDLLIGYWSDNLRSRLGRRHPFMYAAAVPVAVFFYF
                     LWHAPRALEGASALLFAIAMLIGVRVSVASYEIPSTALTPELAPDYHQRTSLLAYRWF
                     FAMASIGVIQLLLYVVYLRQDAANPLGARNPERYAEFGAMAAIVMLVCILASSAATHS
                     RIPFLHTAPRRRVTMAKTFRDIASVFTNPALLVLMSSSLLGGAGVGITTALQTYFYLH
                     LWGLLPQTIGPLSLGALLASVAGVFLAPAISKKFGEKRAMIVLLSISVVTSILPVSAR
                     LLGL"
     gene            complement(1295..4156)
                     /locus_tag="VHN39_14395"
     CDS             complement(1295..4156)
                     /locus_tag="VHN39_14395"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817582.1"
                     /translation="MQHKVRLLASSALLVAVTAFGPTAYAQTRSGTTAAASNTIEELV
                     VTAEKRAQSLQDVPVAISAFTSANRDLVGINTIQDMTNFTPGLNYSSAVDRATIRGVG
                     RLTNAHPVAVPVAVYDDGIYTTSTVTAGKTPIFTDRVEVLRGPQGTLYGRNSLGGAIN
                     VISRHPTEEFYAEVRATVANYKRTLIEGAMSGPLAPDLQFRLAGNWEKQRDGYFQNIV
                     PGMPSEGNVIDQYYVEGQLQAKFGEHMDGWMKVAIAGWNNGAGGPGARAGYSPGPINF
                     AEFAGQNPNAGFACSPGGVVNSVVNASPAGCANPAASDPRKFASSTIQTVSLDDTYII
                     SGNLTYHFDNVDLKYIVGGNNYHYSLFQDNDGAAAFTSFVIPVSGTGVCSSLFVAIGV
                     CSPLKVFPQKTSTYQEEYNNISHEIDLSSNGNGPFQWLGGLYYYREGYRQPVFTTEPN
                     QPQFTNGSAVTPAAAVLTGPVGLPFQSRLFDNKTQFENDSYAAFGQVDWKFTDTLKLT
                     FGLRYNHDHLSGQEDVRLLCFATSPCGTTPESLGSFTPIVDITSALAYLGGFPATNIT
                     PQGVVPGGLGGVTFTPDGFAHRKYEISSTATTGTAGLQWAPDKDTMVYGRYGRGYLQG
                     GINSGVTSSLGQFPYTGPEFINNYEIGLKKDFGRKLQTNIAIFYYDFSNYQVPLTVAN
                     VSGGLATSQSRYLNVPKSVSEGIEFESTWAPIDNLRILFNYSYNPSRIDQLTGIIDPS
                     DPEALQPGAKPVTPGPVQTCTGTGTTVTAANPLPNPLCDAATGLVQRAQNMHGNSLPQ
                     QPRNKVAFNILYTFDFERGSLTPSASYVWRDKQYSGIFQRAYNASPSWDQVDARVTWK
                     DKDNKYSVIAYIKNIGNTLGYDGGSTSSRLSGAFPNAAIAASQGTALPVTAGLPSNAT
                     NTNGVICAAGCANVTKGGIATSYALTPPRTFGVEFQYRF"
BASE COUNT          809 a         1341 c         1621 g          815 t
ORIGIN      
        1 atcaggccca gaagacgtgc gctgactggc aggatcgagg tgacgaccga gatggagagc
       61 agcacgatca tcgcccgctt ctcgccgaac ttcttcgaga tcgccggagc caggaagacc
      121 ccggcgacgg acgccagcaa ggcgcccagg gacaggggcc cgatggtctg aggcagcagg
      181 ccccacaggt gtagatagaa gtaggtttgg agagccgtcg tgatcccgac cccggcgccg
      241 cccaacaggc ttgagctcat gagcaccagg agcgcggggt tcgtgaagac cgaggcgatg
      301 tcccgaaagg tcttggccat cgtcacgcgg cgtcggggcg cggtgtgcag gaagggaatg
      361 cggctatggg tggcggcgct tgaagccagg atgcagacga gcatcacgat cgcggccatt
      421 gccccgaact ccgcgtagcg ctccggattt cgggcgccga gcgggttggc ggcgtcctgc
      481 cgcaggtaga cgacgtagag cagcagttgg atgaccccga tcgacgccat ggcgaagaac
      541 cagcggtagg ccagcaggct ggtccgctga tgatagtccg gcgccagctc tggcgtcagc
      601 gcggttgagg ggatctcata gctcgccacc gacacgcgca cgccgatcag catggcgatg
      661 gcgaagagca gggccgaggc gccctcgagc gcgcgcgggg cgtgccacag gaagtagaaa
      721 aaaaccgcca ccggcacagc ggcggcgtac atgaagggat gccgtcgacc caggcgcgag
      781 cggagattgt ccgaccagta tccgatcagc agatcgagga tcacgtcggc gaccagggac
      841 accaggatcg ccgccccggc ccagaccgcc ggaatgtgca tcacctggtt gaaatagtag
      901 acgaggacgg tcgcggagag cgcgccggcg gagaccccgt aagccaccga accgacgccg
      961 taagtcagct tgagcggaaa tccgagcggc ggagggttcg ggactggcga actcatgatt
     1021 cgcaaatccg cccggtacag ccgctcgaca ccatggtgtc ctcctgccgc gttcacgcgg
     1081 cgaccggcgg atgttcagac cggtgaaccg acccgcgccg ctctttaggc atcgaccgtg
     1141 cgggaggcgt ccggggccgt caacggcttt gatcttacat tgtagacacc ttcgaagaac
     1201 gggtgcggcg gtggtcgaat gagccgcaaa aacaaagggc gcgtcctttc ggacgcgccc
     1261 ctgccttgat ttggcgaacc ggaaaaccgg atcgttagaa gcggtactgg aactccacgc
     1321 cgaaggtgcg gggcggggtg agcgcgtagg atgtggcgat cccgcccttg gtgacattgg
     1381 cgcaacccgc cgcgcagatc acgccattgg tgttcgtcgc gttggagggc aggccggctg
     1441 tgaccgggag cgcggtgcct tgcgaggcgg cgatcgccgc gttcgggaag gccccggaca
     1501 ggcgggagga ggtcgagccg ccgtcgtagc ccagcgtgtt gccgatgttc ttgatgtagg
     1561 cgatcaccga gtacttgttg tccttgtcct tccaggtcac gcgggcgtcc acctggtccc
     1621 agctgggcga ggcgttgtac gcgcgctgga agatgccgga gtactgtttg tcgcgccaaa
     1681 cgtagctcgc cgacggggtc agcgagccgc gctcgaagtc gaaggtgtag aggatgttga
     1741 acgcgacctt gttgcgcggc tgctgcggca gggaattgcc gtgcatgttc tgggcccgct
     1801 ggacgaggcc ggtggccgcg tcgcagagcg ggttggggag ggggttggcg gcggtgacgg
     1861 tcgttcccgt acccgtgcag gtctgaaccg ggcccggggt caccggcttg gcgccgggtt
     1921 gcagggcttc cgggtcggac ggatcgatga ttcccgtcag ctgatcgatc cgcgaggggt
     1981 tgtacgagta gttgaacagg atccgcaggt tgtcgatcgg cgcccaggtg ctctcgaact
     2041 cgatcccctc ggagaccgat ttgggcacgt tcagatagcg gctctggctg gtggccaggc
     2101 cgcccgacac gttggccacc gtcagcggca cctgatagtt cgagaagtcg tagtagaaga
     2161 tcgcgatgtt ggtctgcagc ttgcggccga agtccttctt caacccgatc tcgtagttgt
     2221 tgatgaactc aggtcccgtg taagggaact ggcccagcga cgaggtgacg ccggagttga
     2281 tgccgccctg aaggtagccg cggccatagc ggccgtagac catggtgtcc ttgtcgggcg
     2341 cccactgcag gccggccgtg ccggtcgtgg cggtcgagga gatttcgtat ttgcggtgcg
     2401 cgaagccgtc cggcgtgaag gtcaccccgc cgaggccgcc gggcacgacg ccttgcggcg
     2461 tgatgttggt cgccgggaag ccgccgaggt aggccagcgc cgacgtaata tcgacgatgg
     2521 gtgtgaagct gcccagcgat tccggggtgg tgccgcaggg gctggtggcg aagcacagca
     2581 accgcacgtc ttcctggccg gacaggtggt cgtggttgta gcgcaggccg aaggtcagct
     2641 tcagggtgtc ggtgaacttc cagtcgacct ggccgaaggc ggcgtaggag tcgttctcga
     2701 actgggtctt gttgtcaaag agccggctct ggaagggcag gccgacgggt ccggtcagga
     2761 ccgcggcggc gggcgtgacc gcgctgccat tggtgaattg cggctggttc ggctcggtgg
     2821 tgaacaccgg ctggcggtag ccttcacgat agtagtagag accgcccagc cactggaacg
     2881 ggccattgcc gttcgaggac aggtcgatct cgtggctgat gttgttgtat tcttcctgat
     2941 aggtggaggt tttctgcggg aagaccttca gcggcgagca gacgccgatt gcgacgaaca
     3001 gcgacgagca gacgcccgtg ccgctgaccg ggatcacgaa ggacgtgaag gccgcagcgc
     3061 cgtcgttatc ctggaacagg gagtagtgat agttgttccc gccgacgatg tacttcaggt
     3121 cgacgttgtc gaagtggtac gtcaggttgc cggagatgat gtaggtgtcg tccagcgaaa
     3181 ccgtctgaat cgtgctcgag gcgaacttgc gcggatcgct ggccgcaggg ttggcgcagc
     3241 ctgccggcga ggcgttgacc acgctgttga ccacgccgcc cggcgagcag gcgaagcccg
     3301 cgttgggatt ctggccggcg aactcggcga agttgatcgg cccgggcgaa tagccggccc
     3361 gggcgccagg gccgccggcc ccgttgttcc agcccgcgat cgcgaccttc atccagccgt
     3421 ccatgtgctc gccgaacttg gcctgcaatt ggccctcgac atagtactgg tcgatgacgt
     3481 tgccctcgga gggcatcccc gggacgatgt tttggaagta gccgtcgcgc tgcttttccc
     3541 agttgcccgc gaggcggaac tgcaggtcag gcgccagcgg gccggacatg gccccttcga
     3601 tcagggtgcg cttgtagttg gccaccgtgg cgcggacctc ggcgtagaac tcttcggtcg
     3661 gatgacgcga gatgacgttg atggcgccgc cgagggagtt acggccgtag agggtgccct
     3721 gcggaccgcg cagcacttcc acccggtcgg tgaagatcgg cgtcttgccg gcggtcacgg
     3781 tcgaggtcgt gtagatgccg tcgtcgtaga ccgcgacggg cacggccacc gggtgggcgt
     3841 tggtcaggcg gccgacgccg cggatggtcg cgcggtcaac tgcgctggaa tagttcaggc
     3901 ccggcgtgaa attggtcatg tcctggatgg tgttgatccc caccaggtcg cggttcgccg
     3961 acgtgaaggc cgagatggcc accggcacat cctgaaggct ctgggcccgc ttttcagcgg
     4021 tgaccaccag ctcttcgatg gtgttgctgg ccgcggcggt cgtgccggag cgagtttgag
     4081 cgtaggccgt cggcccgaac gcggtgacag ccaccagcaa tgcgctggac gccaaaaggc
     4141 gaaccttatg ttgcaactta gcctccccag tgaccgaata ggtcttgttg aattcaacgc
     4201 ttcatttgtt acggaattta ccgcgacgcg cagacgtctg acctaagcgg ccatccgcca
     4261 gcctggcgtc gtcgcagcga attccatgga tcgatagtcc gggaaaactt gatcgggggc
     4321 gggcatagga catcgcgcgg ccgcgagaat tcgcaaccct gcgcacggtc catatctgcc
     4381 cgttggcccc caatgttgtc ctccctgccg cgcgtacgcg gcctttgtcg ggcgttcctg
     4441 tggcaaaaac cacggtcgcc tgatcacctt gttccgtgaa cctgcggtag gcccacgaag
     4501 gcgtcaacgg ttttcgggct tttcaactgt gcaacaatcg aaaagtcggc acggctgcaa
     4561 caggtcgaat tcgacgttca tgccaa
//
LOCUS       DATAJL010000756         5329 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_63803,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000756 DATAJL010000000
VERSION     DATAJL010000756.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5329
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63803"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VHN39_14400"
     CDS             <1..263
                     /locus_tag="VHN39_14400"
                     /inference="COORDINATES: protein motif:HMM:NF025447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4262 domain-containing protein"
                     /protein_id="HEX2817583.1"
                     /translation="RSLPIGQAIGDIFGNHMAYLFPVAKEHYAEHVGWSRWFYGDDDF
                     PCVQLVWPDRNGVFPWQADFDESFRDDQPDLSPTGWVSELRH"
     gene            complement(273..1391)
                     /gene="dnaN"
                     /locus_tag="VHN39_14405"
     CDS             complement(273..1391)
                     /gene="dnaN"
                     /locus_tag="VHN39_14405"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEX2817584.1"
                     /translation="MKLTIERAALLKALGHVQSAVERRNTIPILSNVLLSAERDRLTF
                     SATDLDLEIIDEALAQVDQPGQITAPAHTLYEIVRKLPEGADVVLSFTGEDPRLTVSA
                     GRSRFNLPVLPAGDFPVMSSDGLSGRLAVDTADLIRLIDKTKFAISAEETRYYLNGLY
                     LHTVVEDGKTLLRAVATDGSRLALAEMIAPEGAAGSPGVIVPRKTINEARRLLDDAGE
                     QVELQISPQKVRFDFGGAALTSKVIDGTFPDYPRVIPKDNTRIVLVDSKLFAQAVDRV
                     ATISAEKSRSVRMAVEGGKCVLTVRNMEAGQAVEELELDYDGDPFELSFNARYLLDIT
                     DQISGEMAELRFGGPNDPALVLDPQDADVQYILMPLRV"
     gene            complement(1540..2154)
                     /gene="grpE"
                     /locus_tag="VHN39_14410"
     CDS             complement(1540..2154)
                     /gene="grpE"
                     /locus_tag="VHN39_14410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEX2817585.1"
                     /translation="MSEDDMPDEADAFIAEATADELTALRVENGALKEQILRYAADAE
                     NTKRRAEREANDARAYAIQKFARDLLGVADNLARALTHEPESEDAAVKNFVLGVEMTD
                     KELQSAFERNGLKKIEPARGDKFDPHQHQAMMEVPGTDVAGGGVVEVMQPGYELLGRL
                     VRPAMVAVAAKAGGAEAPKSNGATLNPYSAEDDTDPGASVDRRA"
     gene            complement(2181..3248)
                     /gene="hrcA"
                     /locus_tag="VHN39_14415"
     CDS             complement(2181..3248)
                     /gene="hrcA"
                     /locus_tag="VHN39_14415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEX2817586.1"
                     /translation="MSSPLFASGPSLAELDERARDIFRRIVESYLETGEPVGSRTLSK
                     GGLQLSPASIRNTMQDLTQLGLLGAPHVSAGRLPTHAGLRLFVDGLLEVGDVGAIDRQ
                     AIEARLHAHGRNYEDALNEASSILSGLAGGAGVVVTPIRDAGVKHVEFVSLGAERTLA
                     VMVFADGTVENRLIRLPAGVTPSALTEASNFLNARLRGRTLVEAKTDLRTDLDKARRE
                     LDVTAARLVEDGLAAWGGGEAEDRALIVRGRANLLEEAGAVEDLERVRSLFEDLEQKE
                     QLIQLLDGVREGQGVRIFIGAETRLFSLSGSAVIAAPYMTGSQRVLGAIGVIGPARLN
                     YARIIPLVDYTARVLGQVMNA"
     gene            3356..4072
                     /gene="rph"
                     /locus_tag="VHN39_14420"
     CDS             3356..4072
                     /gene="rph"
                     /locus_tag="VHN39_14420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004549 - tRNA-specific ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HEX2817587.1"
                     /translation="MRPSERLADVLRPVTLETGVNRYAEGSCLVSFGHTKVLVTASLE
                     EGVPGFLRGKGQGWVTAEYGMLPRATHTRGRREAAQGKQSGRTQEIQRLIGRSLRAIV
                     DLKALGERQISIDCDVIQADGGTRTASVTGAWVALRLATKYLLDEGVITKDPILDQVA
                     AISCGVFNDTPVLDLDYEEDSNAEADANFVLTGSGAIVEIQATGEKRGFSQGEFEALF
                     TLARKGIGELIALQKAATAG"
     gene            complement(4378..4620)
                     /locus_tag="VHN39_14425"
     CDS             complement(4378..4620)
                     /locus_tag="VHN39_14425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017504942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2817588.1"
                     /translation="MPIRVHLDRVLLERRMSLTELADRVGVTIANLSILKTGKARAVR
                     FSTLAALCRELDCQPGDLLLYEAGPSDDLPDDDEDT"
     gene            complement(4631..5155)
                     /locus_tag="VHN39_14430"
     CDS             complement(4631..5155)
                     /locus_tag="VHN39_14430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEX2817589.1"
                     /translation="MRALGPGSVSSFLKIILDVVFAALWIALGAVALVLLATLLFSFN
                     PDLLPAVLTANVATVARRGPLLAGALLGFGLSIGGVLVIVHSLRQIFVTLTAGDPFHP
                     RNVRRLRLIGLMLAVLELGRYAVWSVSPFMPWVKDVRPDFSLTSWFSVLVVFVLAEVF
                     REGARLRREAELTI"
BASE COUNT          884 a         1776 c         1836 g          833 t
ORIGIN      
        1 gtcgatccct gccaatcggc caggcgatcg gggacatctt cggcaaccac atggcctacc
       61 tgtttcccgt cgcgaaggag cactacgcag agcatgtcgg ctggagccgc tggttctatg
      121 gcgacgacga cttcccgtgc gtgcagcttg tctggccgga caggaatggt gtgttcccgt
      181 ggcaggctga tttcgacgaa agctttcgcg acgatcagcc cgacctttcg cccaccggat
      241 gggtcagcga actaaggcac tgacgtcgcg ccctaaaccc gcaacggcat caggatgtac
      301 tgcacgtccg catcctgcgg atcgagcacc aaggccgggt cgttcggccc accgaaccgc
      361 agctcggcca tctcgccgga gatctggtcg gtgatgtcca gcaggtaacg ggcgttgaag
      421 ctgagctcga aggggtcgcc gtcgtagtcg agctccagct cttcgacggc ctggccggct
      481 tccatgttgc gcacggtcag cacgcatttg ccgccctcga ccgccatgcg caccgagcgg
      541 gacttttccg ccgagatggt ggccacgcgg tcgacggcct gggcgaagag cttggaatcc
      601 accagcacga tgcgggtgtt gtccttgggg atcacccggg gatagtccgg gaaggtcccg
      661 tcgatgacct tggaggtgag cgccgcgccg ccgaagtcga agcggacttt ctgcgggctg
      721 atctgcagtt cgacctgctc gccggcgtcg tccagcaggc gccgcgcctc attgatggtc
      781 ttgcggggca cgatgacacc aggggaaccg gcggcgccct ccggggcgat catctcggcc
      841 agcgccaggc ggctgccgtc cgtggccacg gcgcgcagca gcgtcttgcc gtcctcgacc
      901 acggtgtgga ggtagaggcc gttcaggtag tagcgggttt cctcagcgga gatcgcgaac
      961 ttggtcttgt cgatcagccg gatcaggtcg gcggtgtcca cggccaatct tcctgaaaga
     1021 ccatccgagc tcatcaccgg gaagtcgccg gctggcagca ccggcaggtt gaagcggctg
     1081 cggcccgccg agacggtcag cctcgggtcc tcgccggtga agctcagcac cacatcggcg
     1141 ccttccggca gcttgcggac gatctcgtag agggtgtggg ccggcgcggt gatctggccg
     1201 ggctggtcca cctgggccag cgcctcgtcg atgatctcga gatcgaggtc ggtggccgag
     1261 aaggtcagcc ggtctcgctc ggccgataac aggacattcg acaggatcgg gatggtgttg
     1321 cggcgctcca ccgcgctttg cacgtggccc agcgccttca aaagcgccgc ccgctcgatc
     1381 gtcagcttca tgtctatgtc cgaaccgcac cgcgcgggag cgattcgccg cccgcgcccc
     1441 ccgacctgga aggacttgcg acattagccg atttaccgtg ccggggaaga ggcggtcaga
     1501 cgctcataag aggtcccata agcgcgagcc gccgcgcggt caggcgcggc gatccaccga
     1561 ggcgcccgga tcggtgtcgt cctcggcgga ataggggttg agggtcgccc cgttggactt
     1621 gggcgcctcg gccccgcccg ccttggcggc gaccgccacc atggccggcc ggaccaggcg
     1681 gccgagcagc tcatagcccg gctgcatgac ctcaaccacg ccgccgccgg ccacatcggt
     1741 cccggggacc tccatcatcg cctggtgttg gtgcgggtcg aacttgtcgc cgcgggccgg
     1801 ctcgatcttc ttgaggccgt tgcgctcgaa ggcggactgc agctccttgt cggtcatctc
     1861 gacgccgagc acgaagttct tcaccgccgc atcttcgctt tcgggctcgt gggtgagcgc
     1921 gcgggcgagg ttgtcggcga cgcccagcag gtcgcgggcg aatttctgga tcgcgtaggc
     1981 gcgcgcgtca ttggcctcgc gctcggcccg gcgcttggtg ttctcggcgt cggcggcata
     2041 gcgcaggatc tgttccttca gggccccgtt ctcgaccctg agcgccgtga gttcgtcggc
     2101 ggtcgcttcg gcgataaagg cgtcggcctc gtcaggcata tcgtcttcgg acatcaggtc
     2161 tcgtctctca atttcgtcgt tcaggcgttc atcacctggc ccagcacccg ggcggtatag
     2221 tccaccaacg gaatgatccg ggcatagttc aagcgggccg ggccgatcac gccgatcgcg
     2281 cccagcaccc gttgtgaccc tgtcatatag ggggctgcga tcacggcgga acccgaaagc
     2341 gagaagagcc gggtttccgc gccgatgaaa atgcgcacgc cctggccctc gcgaaccccg
     2401 tccagcagct ggatcagctg ctctttctgc tccaggtcct cgaagaggga acggacccgc
     2461 tccagatctt cgaccgcgcc ggcctcctcc agcagattgg cccggccgcg cacgatcagc
     2521 gcgcggtcct ccgcctcacc gccgccccag gcggccagac catcctccac cagccgcgcg
     2581 gcggtaacgt cgagttcacg gcgcgccttg tcgagatcgg tcctgaggtc ggtcttggcc
     2641 tccaccaggg tgcggccgcg caggcgggcg ttgaggaaat tggacgcctc ggtgagcgcc
     2701 gagggcgtga ccccggccgg caggcggatc aggcggtttt ccaccgtgcc gtcggcgaag
     2761 accatgaccg ccagcgtccg ctccgcgccc agcgagacga actccacatg cttgacgccc
     2821 gcgtcgcgga tcggagtgac cacgacgccc gcgccgccgg ccaggcccga gaggatcgag
     2881 ctggcctcgt tcagcgcatc ctcgtagttg cggccatggg cgtgcagccg ggcctcgatg
     2941 gcctggcggt cgatggcgcc cacgtcgccc acctccagca aaccgtcaac gaagagcctg
     3001 aggcccgcgt gggtcggcag ccgcccggcg ctgacgtgcg gcgcgcccag caagccgagc
     3061 tgggtcagat cctgcatggt gttgcggatc gaggccggtg agagctgcag gccccccttg
     3121 gagagcgtgc gcgagcccac cggctcgccg gtctccagat agctctccac aatacggcgg
     3181 aagatatccc gcgcgcgttc gtcgagttcg gccagggagg ggccggaggc gaagaggggg
     3241 ctgctcactt aggtctggcg gcgttctctg ttccgtccat ggactggacc ttgccgatct
     3301 aggataagcg cggcgcaagc gggcgcaagc tgtggcccgc accaggagta tccgcatgcg
     3361 cccgtccgaa cgcctcgccg acgtgctgcg gcccgttacc ctggagaccg gcgtcaaccg
     3421 ctatgccgag ggctcgtgcc tggtcagctt cggccacacc aaggtcctgg tgaccgccag
     3481 tcttgaggag ggcgtgccgg gcttcctgcg cggcaagggc cagggctggg tcaccgccga
     3541 gtacggcatg ctgccccgcg ccacccacac ccgcggccgc cgcgaggccg cccaggggaa
     3601 acaatcgggc cgcacccagg agatccagcg gctgatcggc cgttccctgc gcgccatcgt
     3661 cgacctgaag gcgctgggcg agcggcagat ctccatcgac tgcgacgtga tccaggccga
     3721 cggcggcacg cgcaccgcct ccgtcaccgg cgcctgggtg gcgctgcggc tcgccaccaa
     3781 atacctgctg gacgaaggcg tgatcaccaa ggacccgatc ctcgaccagg tggcggcgat
     3841 cagctgcggg gtgttcaacg acacgcccgt gctcgacctc gactacgagg aggattccaa
     3901 cgccgaggcc gacgccaact tcgtgctgac gggctcgggc gccatcgtgg aaatccaggc
     3961 caccggcgag aagcgcggct tctctcaagg ggagttcgag gccctgttca ccctggcccg
     4021 caagggcatc ggcgagctga tcgccctgca gaaggccgcg accgccggct aagtggagac
     4081 ggctagatac gaaaacgggc ggctggtttc ccagccgccc gcttcggacc gtcccctcag
     4141 gaacagtctt gttcttagag cccggccagc aggtggcgga aagccgaggc cggcatccgg
     4201 tccagctcac gcgccagcgg cgcgaagagg gcgttcaggg cgcgttcgat ggcggcgatc
     4261 atcgggaaac tcctatagtg cagtgcagca ttgtgcggcg catataggat gcgacgttga
     4321 gattgcaagg tttccggcgg caaggctgaa ttgtcgcacc gcaatgcggt ggccgcctca
     4381 ggtgtcttcg tcgtcgtccg ggagatcgtc ggaggggccc gcctcataga gcaacaggtc
     4441 gccgggctgg cagtcgagct cgcggcacag cgcggccagg gtcgaaaacc gcacggcgcg
     4501 ggccttgccg gtcttcagga tcgagaggtt ggcgatggtg acgccgacac ggtcagcgag
     4561 ctcggtgagc gacatgcgcc gttccagcag cacgcggtcg aggtggacgc ggatgggcat
     4621 cggggcgcgc ctagatcgtc agctcggctt cgcggcgcag ccgggcgccc tcgcggaaca
     4681 cctcggccag cacgaagacc accaggacgg agaaccagga ggtgaggctg aagtcgggcc
     4741 ggacatcctt cacccagggc atgaacgggc tgacgctcca cacggcgtag cggcccagct
     4801 ccaggaccgc cagcataagg ccgatgagcc gcaggcgccg cacgttgcgc ggatggaagg
     4861 ggtcgccggc ggtgagcgtc acgaaaatct ggcgcaggga atggacgatg accagcacgc
     4921 cgccgatcga gaggccgaag cccagcaggg cgccggccag cagcgggccg cggcgcgcca
     4981 cggtcgccac attggcggtg agcacggccg ggagcaggtc gggattgaag ctgaacagga
     5041 gcgtggccag cagcaccagc gccacagcgc cgagcgcgat ccacagggcg gcgaagacca
     5101 cgtccaggat gatcttcaga aagctggaga ccgatcccgg tccaagtgct cgcatccagc
     5161 gtcctccccc tctaacgcca aaacccgccc gggctgcccc gagacgtgcg ggaacagcgg
     5221 gagcgggtcg gacgatccgc attggcaaag agcctagcgg atcgaggcgg cgacggcgat
     5281 tgccagcatc ggggtcatcg cgagcgcgat gaagatggtg agcgaggcg
//
LOCUS       DATAJL010000757         2236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96216,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000757 DATAJL010000000
VERSION     DATAJL010000757.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96216"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1224)
                     /locus_tag="VHN39_14435"
     CDS             complement(<1..1224)
                     /locus_tag="VHN39_14435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family peptidase"
                     /protein_id="HEX2817590.1"
                     /translation="MTLRQSVVLFLAAFCVAGAARAQGAYDPLKTFAPLTLPAPPTTL
                     RTGSGAPGPAYWQNRVDFNIAAKIDTAAHVLTGDETVTYTNNSPEALGALWFQMDQNL
                     YRRDSRGYAMSGGRRVDPKLSTEGYVVDAVTVGGKAVNTVVSDTRMRVDLPAAVKGAG
                     GKVQVHVLYHFTIPGLFGGRMAWETNKSGDIYDLAQWYPRLQVFDDVRGWDTLPYLAN
                     EFYLEYGAFDYAVTVPGDMIVAGSGALTNPNEVLTPEQRARWKQAQASDKTVVIRTPE
                     EVATTPPATGTKTWRFHMENTRDVAFTASRAFVWDAARINLPGGKTAMAQSVYPPESV
                     GEGAWSRSTEYMKDAVERFSKRWYPYPWPNAINVAGPATGMEYPGIVFDGINDKAKTL
                     FFISAHEIGHSWFPMI"
     gene            complement(1286..>2236)
                     /locus_tag="VHN39_14440"
     CDS             complement(1286..>2236)
                     /locus_tag="VHN39_14440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2817591.1"
                     /translation="GLYYPTGSLKARLCVHGRRALYAFCDKHHVDYDRCGKLVVATAP
                     EDEARLVDILEQARTNDVEGMEQISAAKAIAMEPELKCYGALISPQSGILDSHGYMLA
                     LRGEIEAGGGAVVTSTPFEGATPLEGGGFNVRAGGAEPATLTCRYLVTAPGLSAQAVA
                     ALIEGFPAAEIPKGHYGKGMYFRLVGKAPFARLIYPPPIHGALGTHYRRDLGGQAVFG
                     PNLTYVDTLDYSVDPAMRGEFAAYIRKFWPAVPEEALSPDYAGIRPKLHGPDEPQPDF
                     RIDGAELHGLESLVALFGIESPGLTSSLAVGEEVMDRLGL"
BASE COUNT          342 a          762 c          775 g          357 t
ORIGIN      
        1 gatcatcggg aaccacgagt gcccgatctc gtgcgccgag atgaagaaca gggttttggc
       61 cttgtcgttg atcccgtcga agacgatgcc cggatattcc atgccggtcg cgggcccggc
      121 cacgttgatc gcgttcggcc aggggtacgg gtaccagcgc ttcgagaacc gctcgacggc
      181 gtccttcata tattcggtgg agcggctcca ggccccctcg ccgacgctct ccggcggata
      241 gaccgactgg gccatggccg tcttgccgcc cggcaggttg atccgcgcgg catcccacac
      301 aaaggcccgg ctggccgtga acgccacgtc gcgggtgttc tccatgtgga accgccaggt
      361 cttggtcccc gtggccggcg gcgtcgtggc cacctcctcg ggcgtacgga tcaccacggt
      421 cttgtcgctg gcctgcgcct gcttccaccg cgcccgctgc tcaggcgtaa gcacctcgtt
      481 cggattggtc agcgcgcccg accccgccac gatcatgtcg cccggcacgg tcaccgcgta
      541 gtcgaacgcg ccgtattcca ggtaaaactc gttggcgaga tagggcagcg tgtcccagcc
      601 gcggacgtcg tcgaagacct gcaggcgcgg gtaccactgc gccaggtcgt agatgtcgcc
      661 tgacttgttg gtctcccagg ccatccgccc gccgaacagg ccggggatcg tgaagtggta
      721 caggacatgg acctgcacct tgccgcccgc gcccttcacc gcggccggca ggtcgacgcg
      781 catccgggtg tcggagacca ccgtgttcac ggccttgccg cccaccgtca cggcgtcgac
      841 gacgtagccc tcggtggaca gcttggggtc gacgcggcgg ccgccggaca tggcgtagcc
      901 acggctgtca cggcgataaa ggttctggtc catctggaac cacagtgcgc ccagggcctc
      961 ggggctgttg ttggtatagg tgacggtctc gtcgccggtc agcacatggg cggccgtgtc
     1021 gatcttcgcg gcgatgttga agtccacgcg gttctgccag taggccgggc cgggcgcgcc
     1081 ggagccggtg cggagcgtcg tcggcggcgc gggcagggtc aggggcgcga aggtcttcaa
     1141 ggggtcgtag gcgccctggg cccgggcggc gccagcgacg caaaacgcgg ccaggaacag
     1201 aacgacggac tgacgcaagg tcatcaggca aggctccccg aacaagccat ccatctcgcg
     1261 cgcccgggac cggcgcgcaa ggtcgctaga gcccgagccg gtccatgacc tcttcgccga
     1321 cggccaggga agaggtgagg ccggggctct cgatgccgaa cagcgccacg aggctttcga
     1381 ggccatgcag ttcggcgccg tcgatgcgga aatccggctg cggctcgtca gggccatgca
     1441 gcttgggccg gatgccagcg tagtcggggc tgagcgcctc ttccggcacc gcgggccaga
     1501 acttgcggat ataggcggcg aactcgccgc gcatcgccgg gtcgacgctg tagtcgaggg
     1561 tatcgacata ggtcaggttc ggcccgaaca ccgcctggcc gcccaggtcg cggcggtaat
     1621 gggtgcccag cgccccatgg atcggcggcg gatagatcag ccgcgcgaag ggcgccttgc
     1681 ccaccaggcg gaagtacatg cccttgccgt agtggccctt gggaatctcc gccgccggga
     1741 aaccctcgat cagcgcggcc acggcctggg ccgagaggcc gggcgcggtg accagatagc
     1801 ggcaggtgag cgtggccggt tctgccccgc cggcgcggac gttgaagccg ccgccttcca
     1861 acggcgtcgc cccctcgaac ggcgtcgacg tcaccaccgc cccgccaccg gcctcgatct
     1921 cgccgcgcag cgccagcatg tagccgtggc tgtcgaggat cccgctctgc ggcgaaatca
     1981 gcgcgccgta acacttcagt tccggctcca tggcgatggc cttggcggcg ctgatctgct
     2041 ccatgccctc gacgtcgttg gtgcgggcct gttccaggat atcgacgagc cgcgcctcgt
     2101 cctccggggc ggtcgccacc accagcttgc cgcagcggtc gtagtccacg tggtgcttgt
     2161 cgcagaaggc gtagagggcg cggcggccgt gcacacacag ccgggccttc agcgatccgg
     2221 tcggatagta gagccc
//
LOCUS       DATAJL010000758         2474 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_63864,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000758 DATAJL010000000
VERSION     DATAJL010000758.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63864"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1392
                     /gene="fliF"
                     /locus_tag="VHN39_14445"
     CDS             <1..1392
                     /gene="fliF"
                     /locus_tag="VHN39_14445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HEX2817592.1"
                     /translation="KGLPTAASVGYEIFDNQSAMGQTDFVQQLNRQRALEGELGRTIM
                     GLDGITSARVHLVLPKRQLFEEEAEQPSASVSVGVGGREPGPDQVRAMQNLVAGAVPS
                     LKPDRVTVVDQHAKTLSGGDTGMAAEADGRKSEVEQRIAKQIKTLVEGIVGAGKARVN
                     VTADVDMAQVTTHKEAFDPDGQVVRSESTSGENSKEGSSGGNVQTSSAAKIPGGSTVD
                     PGGDSSNASDKQDSTTNYEITKTTTTEVREPGAVKKIAVAVAVDGVTAPSIPGAKGKP
                     DKPGAYSARSAAEMAQIESLVRTAVGFDATRGDQVTVVNVKFPSADSSEGVTAASPLM
                     GFDKNDIMRAAELGIMAIVAILMMLFIVRPLLKGALGGGGGPMTMLGGPQSTKIVMSP
                     DGQPMQVSFDPATGQQMALPAPGNEILEQKIDIARIEGQVKASSVKRVSEFVDNHPEE
                     SVSIIRTWLHESA"
     gene            1389..2423
                     /gene="fliG"
                     /locus_tag="VHN39_14450"
     CDS             1389..2423
                     /gene="fliG"
                     /locus_tag="VHN39_14450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007675195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009433 - bacterial-type flagellum basal
                     body, C ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEX2817593.1"
                     /translation="MNARSPKSKGVVDAAKLSGPEKAAVVLLALGEDHAGVWKQLDEE
                     EIKVISQAMAGLGQVTAGVVEDLLVEFVSGMGGGNITGSIELTQRLLSSIMPGEKVDT
                     LMEEIRGPAGRTMWDKLGNVNEAVLANYLKNEYPQTVAVVLSKIKSEHAARVLTCLPE
                     DFALECVTRMLRMEPVQREILDKIEQTLRTEFMSNLARTSKRDSHEMMADIFNAFDRQ
                     TETRFITALEERNREAAERIRALMFVFEDLSKLDPGGVQTLLRSVEKDQLALALKGAS
                     DALRDMFFSNMSERAAKIMREDMETMGPVRLREVEQAQMTMVQSAKDLANKGEIVLIG
                     AGGDDDELVY"
BASE COUNT          470 a          865 c          792 g          347 t
ORIGIN      
        1 aagggcctgc cgaccgcggc cagcgttggc tacgagatct tcgacaacca aagcgccatg
       61 ggccagacgg acttcgtcca gcaactcaac cgccagcgcg ccctggaagg cgagctcggc
      121 cgcaccatca tgggtctcga cggcatcact tcggcccggg tccacctggt cctgcccaag
      181 cgtcagctct tcgaggagga ggccgagcaa ccgtccgcct cggtgagcgt cggggtcggc
      241 ggccgtgagc ccggtcccga ccaggtgcgc gccatgcaga acctggtggc cggcgccgtg
      301 cccagcctga agcccgaccg cgtcaccgtc gtcgaccagc acgccaagac gctgtccggc
      361 ggcgacaccg gcatggccgc tgaggccgac ggccgcaaga gcgaggtcga gcagcggatc
      421 gccaagcaga tcaagacctt ggtcgagggc atcgttggcg ccggcaaggc gcgcgtgaac
      481 gtcaccgccg atgtcgacat ggcccaggtc acaactcaca aggaagcgtt cgatccggac
      541 ggccaggtcg tccgctccga aagcacgtcc ggcgagaatt ccaaggaagg ctccagcggc
      601 ggcaacgtcc agacctcctc ggcggccaag atccccggcg ggtccacggt cgatcccggc
      661 ggcgacagct ccaatgccag cgacaagcag gactccacca ccaactacga gatcaccaag
      721 accaccacga ccgaagtgcg cgagcccggc gcggtcaaga agatcgccgt ggcggtcgcc
      781 gtcgacggcg tcaccgcccc gtccatcccc ggcgccaagg gcaagcccga caagcccggc
      841 gcctacagcg cccgctcggc cgccgagatg gcgcagatcg agtccctggt gcgcaccgcc
      901 gtcggcttcg acgcgacccg cggcgaccag gtcaccgtgg tcaatgtcaa gttcccctcg
      961 gccgacagct ctgagggcgt caccgccgcc agccccctga tgggcttcga caagaacgac
     1021 atcatgcgcg ccgccgaact gggcatcatg gccatcgtgg ccatcctgat gatgctgttc
     1081 atcgtccgcc cgcttctcaa gggcgcgctg ggcggcggcg gcggcccgat gacgatgctg
     1141 ggcggtccgc agtccaccaa gatagtcatg agcccggacg gccagccgat gcaggtctcg
     1201 ttcgacccgg ccaccggcca gcagatggcc ctgcccgcac ccggcaacga aattctggag
     1261 cagaagatcg acatcgcccg tatcgagggc caggtgaagg cgagctcggt caagcgcgtc
     1321 tcggaattcg tcgacaatca tccggaggaa tcggtttcga ttatccgcac ctggctgcat
     1381 gagtccgcat gaacgcgcgg tctcccaagt ccaaaggcgt cgtcgacgcc gccaagctga
     1441 gcggccctga aaaggcggcc gtggtgctgc tggcgcttgg cgaagaccac gccggcgtct
     1501 ggaagcagct cgacgaagag gagatcaagg tgatctccca ggccatggcc ggcctcggcc
     1561 aggtcaccgc cggcgtcgtc gaggacctgc tcgtcgagtt cgtctccggc atgggcgggg
     1621 gcaacattac cggctccatc gaactcaccc agcgactgct ctcctcgatc atgccgggcg
     1681 agaaggtcga caccctgatg gaggagatcc gcggtccggc gggtcgcacc atgtgggaca
     1741 agctgggcaa cgtgaacgag gcggtgctcg ccaactatct gaagaacgaa tacccccaga
     1801 ccgtcgcggt ggtgctgtcg aagatcaagt cggagcatgc cgcgcgcgtg ctcacctgcc
     1861 tgcctgagga cttcgcgctg gaatgcgtca cccgcatgct gcgcatggag ccggtgcagc
     1921 gcgagatcct cgacaagatc gaacagaccc tgcggaccga attcatgtcg aacctggccc
     1981 gcacctccaa gcgcgacagc cacgagatga tggccgacat cttcaacgcc ttcgaccgcc
     2041 agaccgagac ccgcttcatc accgcgctgg aagagcgcaa ccgcgaggcg gccgagcgca
     2101 tccgcgccct gatgttcgtc ttcgaagacc tctccaagct cgatccgggc ggcgtccaga
     2161 ccctgctgcg ctccgtcgag aaggaccagc tggcgctggc gctgaagggc gcctccgacg
     2221 ccctgcgcga catgttcttc tccaacatga gcgaacgcgc cgccaagatc atgcgcgagg
     2281 acatggagac catgggtccc gtccgcctgc gcgaggtcga gcaggcgcag atgaccatgg
     2341 tgcagtccgc caaggacctg gccaacaagg gcgagatcgt cctgatcggc gccggcggcg
     2401 acgatgacga gctggtgtac tgatggccgt caccgctccc agcgcgctcg cccccgtcgg
     2461 cttcgtccac gaga
//
LOCUS       DATAJL010000759         7038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_70283,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000759 DATAJL010000000
VERSION     DATAJL010000759.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7038
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70283"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VHN39_14455"
     CDS             complement(<1..252)
                     /locus_tag="VHN39_14455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2817594.1"
                     /translation="MDLNETSEMAAFRGEVRGFLTARRGDFAGGAAKDPKAWQGELIA
                     HGYAARTIPKAYGGYGAEPDILKSRIIAEEFIAAGAPRGI"
     gene            373..1719
                     /locus_tag="VHN39_14460"
     CDS             373..1719
                     /locus_tag="VHN39_14460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbosone dehydrogenase family protein"
                     /protein_id="HEX2817595.1"
                     /translation="MTRTALFAAAGLAALSLAGCGMPAGSPDPWVGFGPNPPLPKPQS
                     ALIPTVGTPKVVGWAEGAAPKAPPGFTVTRYAEGLDHPRWLYVRPNGDVLVSESASQV
                     SPADKDNQGLRGFVQRHIMASVGAAKPSPNKIFLLRDADGDGVAESRMLFAQGLTRPF
                     GMTLVGSTLYVANDNGVVSFPYTPGQTSETGTGQKVFDLPGPPINHHWTKNVVASRDG
                     TKLYATVGSNSNVGDNGLENETGRAAIWEYDIATAKPRIFASGIRNPNGIDFEPTTGT
                     MWTVSNERDEIGNDLPPDFLTSVKDGAFYGWPWSYWGHNVDVRAKPANPEMVAKAIAP
                     DFGMGPHTASLGLAFYTGAAFPMSYRGGAFIGQHGSWNRKPLNGYQVVFIPFAGGQPQ
                     NAPQAFLTGFLDKHQKIQGRPVGVVVDKTGALLVADDVGGIVWRVTPTPAGAPPKK"
     gene            complement(1720..3768)
                     /locus_tag="VHN39_14465"
     CDS             complement(1720..3768)
                     /locus_tag="VHN39_14465"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2817596.1"
                     /translation="MRAKLVLAGLAALFATTALAQTAPSPLTANLAKPPADARHFIIE
                     STGGKHGDSWSWVTPDGTRMARETWNLRGQQWDQDFAGKAGPDGMPASMVIRGVSPTG
                     DAGETFSVAGGTATWKSPTDAGSAAYRAPAFYAPLGGPADTNAWFLERLLASPSKTLA
                     VLPSGKASAIKLTTTEVGEGAMKQTITLWAISGLAPTPIPIWADAQGKFFGTTTVVDW
                     LPEAYAGEIKKLEKVQADATAAQAPKIYRANVKIPAGAVAFTHVKMFDADGLRFLADQ
                     TVVVNKGVITAVGSSARVKAPKGAQIIDGNGKTLVPGLWDCHMHFGDDYTGPQELSLG
                     VTSVRDPGNNDLLTIDRRTRAAKHELLTPHVYPSSLIDGKGPYTAQVANVATSQAEAI
                     ALVDRAKANGFTGVKFYGTFNPAWLPAATAEAHKLGLHVHGHIPAGIRPVDAINDGYD
                     EITHINWIIMQAAPDDVIKVSNGIARFEGPGRFGKDVDLNGPAMNLIVDTMAKKHIYN
                     DPTMVAFESLYVPDNGDLDPSYAPFVGTLPSATERGFHNGGFAVPKDLTRADYRKSWA
                     KMVGLLGKMHKAGIPIVAGTDGSGIEIIHELEIYEEAGFTPAEALAAATIVPATLVGQ
                     DKHTGSIKVGKTADLALVEGDPSKHIGDLRHTRVVMLDGKLLDADALRTAAGFSGRPK
                     "
     gene            complement(3907..4281)
                     /locus_tag="VHN39_14470"
     CDS             complement(3907..4281)
                     /locus_tag="VHN39_14470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516411.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817597.1"
                     /translation="MIGYTTIGTNDLDRAKAFYDTVLAPLGGRRTLGYQRSQYYGSPS
                     RGAMLGVTLPFDGEAATTGNGVMVALSADSPAVVDRVHAAALAAGGACEGPPGQRMDN
                     FYGAYFRDLDGNKLCVFQMGRA"
     gene            complement(4285..4656)
                     /locus_tag="VHN39_14475"
     CDS             complement(4285..4656)
                     /locus_tag="VHN39_14475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817598.1"
                     /translation="MIGYATIGTNDLERAKIFYDAVLEPLGGRRTFANGERMQFYGSK
                     DTPGMIAISKPYDEQPASVGNGSMFGLPAATTAQVDAAHAAALAAGAACDGPPGQRMP
                     TFYGAYFRDLDGNKICIFKLG"
     gene            4780..>7038
                     /locus_tag="VHN39_14480"
     CDS             4780..>7038
                     /locus_tag="VHN39_14480"
                     /EC_number="3.5.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEX2817599.1"
                     /translation="MGRIAKALVFAMIAVGIATQALAQGEPASTAVKHEAWSIAGLKA
                     PAQMVVDHWGVPHIYAASSRDAFFLQGYNAGRDRLWQIDLWRKRGLGRLAASFGPAYV
                     AQDRAARLFLYRGDMAAEWAAYGAGSREAVEAFTAGINAYVAEVDAGKRPLPVEFKLT
                     ASKPEMWGTEDVLRIRSHALVSNVTSEVTRAEVACAAGVGADRLRRKLEPAHTTVVPA
                     GLDPCVVPPDVLKDYLLGTGSVNFDALAGGAQKAEATPQVKLAEAMEAYQNEGSNNWV
                     IAPSRTATGRPILANDPHRPVGVPSLRYIVHLNAPDLDIIGAGEPALPGVSFGHNAQM
                     AWGLTIFYIDQEDLYVYDTRADSYRYKTGYEPMTVIHEAIEVKGEARRDVTLKFTRHG
                     PVLAETPDSGHGAHAFAMRTVWNLPGASGYFGSSRMWRAKSWADFKGGQEAWGTPPLN
                     LVFADTTGDIGWSAAGLTPSRPNWDGLLPVPGDGRYEWAGMMPESQLPALHNPPKGFV
                     ATANQMNLPPDYPANRTISYEWADRSRITRIEEVLAATPKATLADSMALQTDSHDALS
                     RRTIALLAPLQAADPSVGKALDLLRAWDNDETTGSAAAAIYQVWATNHLGHTVVASAT
                     PEAARLLVGSGSLDAVVSYLETPQAAPTRDALLLGSLGAAVNELKHMLGPDMATWSWG
                     RLHHASFTPAAAVLADRQLAAQMATGPLEIPGSAQSPRAATYRPLDFAQTAGASIRLV
                     MDVGAWDNSVAVN"
BASE COUNT         1061 a         2490 c         2395 g         1092 t
ORIGIN      
        1 gatgccccgt ggcgcgccgg cggcaatgaa ttcctcggcg ataatgcgcg acttcaggat
       61 gtcgggctcg gcgccatagc cgccataggc cttggggatg gtgcgggccg cgtaaccgtg
      121 ggcgatcaac tcgccctgcc aggccttggg gtccttggcc gcgccgccgg cgaagtcgcc
      181 gcggcgggcg gtgaggaagc ccctcacctc gccgcggaac gccgccatct cggacgtctc
      241 gttcaggtcc atgtcgttgc tccctgttca caagggagcc cgtttccggc gctcgcgcaa
      301 cggcatccgc cgcgtcacga tgcagcggat gccgcagagc ttggttatag tggcggcagg
      361 gagaccccag ccatgacccg caccgccctc ttcgccgccg ccggacttgc cgccctttcc
      421 ctcgccggct gcggcatgcc cgccggttcg cccgatccct gggtgggttt cggacccaac
      481 ccgccgctgc cgaagccgca gtccgccctg atccccaccg tcggcacgcc caaggtcgtc
      541 ggctgggccg agggcgccgc gcccaaggcg ccgcccggct tcaccgtcac ccgctacgcc
      601 gaggggctgg accacccgcg ctggctctac gtccggccga acggcgacgt gctggtgtcg
      661 gaatcggcct cgcaggtctc gcccgccgac aaggacaacc agggcctgcg cggcttcgtc
      721 cagaggcaca tcatggcgtc ggtgggcgcc gccaagccca gccccaacaa gatcttcctg
      781 ctgcgcgacg ctgatggcga tggggtggcc gaaagccgga tgctgttcgc gcaagggctc
      841 acccggccgt tcggcatgac cttggtgggc tcgactctct atgtcgccaa cgacaacggc
      901 gtggtcagct tcccttacac gccgggtcag acgtcggaga ccgggaccgg ccagaaggtg
      961 ttcgacctcc cgggcccgcc gatcaaccac cactggacca agaatgtggt cgccagccgc
     1021 gacgggacca agctctacgc cacggtcggc tccaactcga acgtcggcga caacggcctg
     1081 gagaacgaga cggggcgggc ggcgatctgg gagtacgaca tcgccaccgc caagccgcgg
     1141 atcttcgcct ccggcatccg caaccccaac ggcatcgatt tcgagcccac caccgggacc
     1201 atgtggacgg tgtccaacga gcgcgacgag atcggcaacg acctgccgcc ggacttcctg
     1261 accagcgtga aggacggcgc cttctacggc tggccctgga gctactgggg ccacaatgtc
     1321 gacgtccgcg ccaagccggc caatccggaa atggtcgcca aggcgatcgc gccggacttt
     1381 gggatgggcc cgcacaccgc gtccctgggc ctggcgttct acaccggcgc ggccttcccc
     1441 atgtcctatc gcggcggggc cttcatcggc cagcacgggt cctggaaccg caagccgctg
     1501 aacggctacc aggtggtgtt catccccttc gcgggcggcc agccgcagaa cgccccccag
     1561 gccttcctga ccgggttcct ggacaagcac cagaaaatcc agggccgccc ggtgggcgtg
     1621 gtggtcgaca agaccggtgc gctcctggtc gccgacgacg tcggcggcat cgtctggcgc
     1681 gtcaccccga cgcccgcggg cgcgccgccg aagaagtagc tacttcggcc ggcccgagaa
     1741 gccggccgcg gtccgaagcg cgtcggcgtc cagcaacttg ccgtccagca tcaccacgcg
     1801 ggtatggcgc aggtcaccga tgtgcttgga cgggtcgccc tcgaccagcg ccaggtcggc
     1861 ggtcttcccc accttgatcg agccggtgtg cttgtcctgg cccaccaggg tcgccggcac
     1921 gatggtcgcc gccgccagcg cctcagcggg cgtgaatccg gcctcctcgt agatttccag
     1981 ctcgtggatg atctcgatac cgctgccgtc ggtgccggcg acgatcggga tgccggcctt
     2041 gtgcatcttg ccaagcaacc cgaccatctt cgcccagctc ttgcggtagt cggcccgcgt
     2101 caggtccttc ggcaccgcga agccgccgtt gtggaacccg cgctccgtcg ccgacggcag
     2161 cgtccccacg aagggcgcgt aggacgggtc caggtcgccg ttgtccggca catagaggct
     2221 ctcgaaggcc accatcgtcg ggtcgttgta gatgtgcttc ttggccatgg tgtcgacgat
     2281 cagattcatg gccggcccgt tgagatcgac atccttgccg aaacgccccg ggccctcgaa
     2341 ccgggcgatg ccgttggaca ccttgatcac atcgtcaggc gcggcctgca tgatgatcca
     2401 gttgatatgg gtgatctcgt catagccgtc gttgatggcg tccaccgggc ggatgccggc
     2461 ggggatgtgg ccatgaacgt ggagacccag cttgtgcgcc tcggcggtgg ccgcgggcag
     2521 ccaggcgggg ttgaaggtcc cgtagaactt caccccggtg aaaccgttgg ccttggcgcg
     2581 atcgaccagc gcgatggcct cggcctggct ggtggcgaca ttggcgacct gggcggtgta
     2641 ggggcccttt ccgtcgatca gcgacgacgg atagacgtgc ggcgtcagga gctcgtgctt
     2701 cgccgcacgg gttcgccgat cgatcgtcag gaggtcgttg ttgcccggat cgcgcaccga
     2761 ggtgacgccc agcgacagct cctgcggccc cgtgtagtcg tcgccgaagt gcatgtggca
     2821 gtcccagagg cccgggacga gggtcttgcc gttaccgtcg atgatctggg cgcccttcgg
     2881 ggccttgacc ctggcggacg agcccaccgc ggtgatcacg cccttgttca ccaccaccgt
     2941 ctggtcggcc aggaagcgca ggccgtccgc atcgaacatc ttcacgtggg tgaaggcgac
     3001 cgcgccggcc gggatcttga cgttggccct gtagattttc ggcgcctggg ccgctgtggc
     3061 gtcggcttgg accttttcca gcttcttgat ctcgccagca taggcctcgg gcagccagtc
     3121 gacgaccgtg gtggtgccga agaacttgcc ctgggcgtcg gcccagatcg ggatgggtgt
     3181 gggcgcgagc ccgctgatgg cccagagcgt gatggtctgc ttcatcgcgc cctcgcccac
     3241 ctccgtggtg gtgagcttga tggcgctggc cttgccgctg ggcagcacgg ccagcgtctt
     3301 actcgggctc gccagcaggc gctccaggaa ccaggcgttg gtgtccgccg gcccgcccag
     3361 cggggcgtag aaggccggcg ccctgtaggc cgcgctgccg gcgtctgtcg ggctcttcca
     3421 ggtggcggtc ccgccggcga cgctgaaggt ctcgcccgcg tcgccggtgg gggaaacgcc
     3481 gcggatgacc atgctcgccg gcatgccgtc cgggccggcc ttgccggcga agtcctggtc
     3541 ccactgctgg ccgcgcaagt tccaggtctc ccgcgccatg cgcgtcccgt ccggcgtcac
     3601 ccagctccag gagtcgccgt gcttgccgcc ggtggattcg atgatgaagt gccgcgcgtc
     3661 ggctggcggc ttggcgagat tggccgtcag gggcgatggc gcggtctgcg ccaacgccgt
     3721 cgtggcgaac agggccgcaa gaccggccaa aacaagcttc gcgcgcatga tcgatgatcc
     3781 tgaaaccgtc cccgccccgt cgcggggcga gggtcagtct tgcggaggcc tgcgggcatg
     3841 agcaaggccg cgccggatta attcgcggca atcacccaac atgcgcggac ggacgatcgc
     3901 gaacgctcag gcccggccca tctggaagac gcagagcttg ttaccgtcaa ggtcgcggaa
     3961 ataggcgccg tagaaattgt ccatccgttg gcccggcggg ccttcgcagg cgccgcccgc
     4021 agccagggcg gccgcatgga cccggtcgac cacggccggc gagtccgccg acagggcgac
     4081 catcacgccg ttgccggtgg tggcggcctc gccgtcaaac ggcagagtga cgcccagcat
     4141 cgcgccccgc gagggggagc cgtaatactg cgagcgttga tagccgagcg tgcggcgccc
     4201 gccgaggggc gccagcacgg tgtcgtagaa agccttggcc cggtcgagat cgttggtccc
     4261 gatcgtcgtg tagccgatca cgcctcagcc cagcttgaag atgcagatct tgttgccgtc
     4321 cagatcgcgg aaataggcgc cgtagaaggt cggcatgcgt tggccgggcg ggccatcgca
     4381 cgcagccccc gcggcaagag ctgcggcatg agcggcgtcg acctgcgccg tggtggcggc
     4441 gggcaggccg aacatgctgc cgttgccaac gctggccggc tgctcgtcgt agggcttgct
     4501 gatggcgatc atgccggggg tgtccttgga gccgtagaac tgcatccgct cgccattggc
     4561 gaaggtgcgc cggccgccca gcggctccag caccgcgtcg tagaagatct tcgcccgttc
     4621 caggtcgttg gtgccgatgg tggcgtagcc gatcatgacg gttccccttg tctgttcagg
     4681 cgcccattct agcccgtgac gcatggggaa ccgcaagccc gcgtggacgc ggaccgcgat
     4741 ctgtcgtcaa ctcttcacag gcatgtaccg gggaacgtga tgggcagaat cgccaaggcg
     4801 ctcgttttcg cgatgatcgc ggtcggcatc gccacccagg cgctggccca gggcgagccg
     4861 gcctctaccg cggtgaagca cgaggcctgg agcatcgccg gcctgaaggc gccggcccag
     4921 atggtagtcg atcactgggg cgtgccgcac atctacgcgg cctcgtcgcg cgacgccttc
     4981 ttcctgcagg gctacaacgc cggccgcgac cggctctggc agatcgacct gtggcgcaag
     5041 cgcggcctcg gtcgtctggc cgccagcttt ggcccggcct atgtggccca ggaccgggcg
     5101 gcgcggctct tcctctaccg cggcgacatg gccgccgagt gggccgccta cggcgccgga
     5161 tcgcgcgagg cggtcgaggc cttcaccgcc gggatcaacg cctatgtggc cgaggtggac
     5221 gcgggcaagc ggccgctccc tgtcgagttc aaactcaccg ccagcaagcc ggagatgtgg
     5281 ggaaccgagg acgtcctgcg catccgcagc cacgcgctgg tctccaacgt cacctcggag
     5341 gtcacccgcg ccgaggtggc ctgcgccgcg ggcgtcggcg ccgaccggct gcggcgcaag
     5401 ctcgagccgg cccacaccac ggtcgtcccc gccggcctcg acccctgcgt ggtcccgccg
     5461 gacgtgctga aggactatct gctcggcacc ggctcagtga acttcgacgc gctggccggc
     5521 ggcgcccaga aggccgaggc cacgccgcag gtgaagctcg ccgaggccat ggaggcctac
     5581 cagaacgaag gttccaacaa ctgggtgatc gcgccctcgc gcaccgccac cggccggccg
     5641 atcctggcca acgatccgca ccgcccggtg ggcgtgccgt ccctgcgcta catcgttcac
     5701 ctgaacgcgc cggacctgga catcatcggc gcgggcgagc ccgccctgcc gggcgtctcc
     5761 ttcggccaca acgcccagat ggcctggggc ctgaccatct tctacatcga tcaggaggac
     5821 ctctacgtct acgacaccag ggcggactcc taccgctaca agaccggcta cgagcccatg
     5881 acggtgatcc acgaggccat cgaggtgaag ggcgaagcgc gccgcgacgt cacgctgaaa
     5941 ttcacccgcc acggtccggt cctggccgag acgcccgatt ctggacacgg ggcccacgcc
     6001 ttcgccatgc gcaccgtctg gaacctgccg ggggcctccg gctatttcgg ctcctcgcgg
     6061 atgtggcggg cgaagtcctg ggcggacttc aagggtgggc aggaggcctg gggaaccccg
     6121 ccgctcaacc tggtcttcgc cgatacgacc ggcgacatcg gctggtcggc ggcggggctg
     6181 acgccgtccc ggcccaactg ggacgggctg ctgccggtgc cgggcgacgg gcgctacgag
     6241 tgggcgggca tgatgcccga gagccagctc ccggccctgc acaatccgcc caaggggttc
     6301 gtcgccaccg ccaaccagat gaatctgccg cccgactatc cggcgaacag gaccatcagc
     6361 tacgaatggg ccgaccgctc gcggatcacc cgcatcgagg aggtgctggc cgccacgccc
     6421 aaggcgacgc tggctgactc catggcgtta cagactgaca gccacgacgc cctgtcgcgc
     6481 cggaccatcg cgctcctggc tccgctgcag gccgccgatc catccgtcgg caaggcgctg
     6541 gacctgctga gggcctggga caacgacgag accaccggca gcgccgcggc ggccatctat
     6601 caggtctggg ccaccaacca cctcggccac acggtggtgg cgtccgcgac gccggaagcg
     6661 gcgcgactgc tggtcggctc cggcagcctg gacgcggtgg tgagctacct ggagacgccc
     6721 caggccgcgc ccacccgcga cgcgctcctg ctcggcagcc tgggcgcggc ggtgaacgag
     6781 ctgaagcaca tgctgggtcc cgacatggcg acctggtcct ggggccgcct gcatcacgcc
     6841 agcttcacgc ctgccgccgc ggtcctggcc gaccgccagc tcgccgccca gatggccacc
     6901 ggcccccttg agatcccggg ctccgcccag agcccgcgcg cggccaccta ccgcccgctg
     6961 gacttcgccc agaccgccgg ggcctcgatc cggctggtga tggacgtagg cgcctgggac
     7021 aactcggtgg ccgtcaac
//
LOCUS       DATAJL010000760         2215 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96321,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000760 DATAJL010000000
VERSION     DATAJL010000760.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96321"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..580
                     /locus_tag="VHN39_14485"
     CDS             <1..580
                     /locus_tag="VHN39_14485"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HEX2817600.1"
                     /translation="HLVSKVKPDMPVLFLDTGMLFGQTLDYRRQLAAKLGLTDVRDLR
                     PAYHDLATADPEAKLWQTDTDACCEIRKVIPLDKALAGFEGWITGRKRFHGGARLSLP
                     VVEQANHQIKFNPLANWTHEDLDAYMAEHDLPAHPLVAQGFPSIGCWPCTKPVEAGDD
                     VRAGRWADTDKTECGIHIARAPGAVSNVGGDI"
     gene            608..1429
                     /locus_tag="VHN39_14490"
     CDS             608..1429
                     /locus_tag="VHN39_14490"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004324 - ferredoxin-NADP+ reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HEX2817601.1"
                     /translation="MNDISLAPAPAPVKAGGAFFVETVTWVQHWTESLFSFRTTRDPA
                     LRFSSGQFVMVGLEKEDGKPLVRAYSIASPSWHEELEFYSIKVADGPLTSRLQKIQVG
                     DQVLIGRKPTGTLVLDGLRPGKRLYMLGTGTGLAPWLSLARDPDVYERFDEVIVTHTV
                     RNVADLNYRDLLSGALAEDELLGELIGPKLKYYPTVTREPFQTKGRITDLIASGQLFR
                     DLGTPPFDKAVDRVMLCGGPSVLADLKQQLIDLGYEEGSIASPGDFVLERAFVET"
     gene            1514..2206
                     /locus_tag="VHN39_14495"
     CDS             1514..2206
                     /locus_tag="VHN39_14495"
                     /inference="COORDINATES: protein motif:HMM:NF012976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817602.1"
                     /translation="MKTRSTLLSRRMFLPGSAALAVGLTTARLASADDVQPLARVSGF
                     PQMPTGFSGVTPCGSYAPPAEIASFGRIAPANEPGEALQISGAIYQHGGKKPASDVKV
                     FAYHTDARGRYNTPNTPFRPRLFGWVKSDAQGRYGFATIKPAPYPELDTPTHIHVSLY
                     AADLPEYWVDDYWFAGDPLITPRQRGLLTGRGGGGETLRLVRGSDGVLRGTRDFILEH
                     VQVSGGCKLYRS"
BASE COUNT          368 a          768 c          716 g          363 t
ORIGIN      
        1 gcacctggtt tccaaggtga agccggacat gccggtgttg ttcctggata ccggcatgct
       61 gttcggccag acgttggact accgccgtca gctggccgcc aagttgggcc tcacggacgt
      121 gcgcgacctg cgccccgcct accacgacct ggccaccgcg gaccccgagg ccaagctctg
      181 gcagaccgac accgacgcct gctgcgagat ccgcaaggtg atcccgctgg acaaggcgct
      241 cgccgggttc gagggctgga tcaccgggcg caagcgtttc cacggcggcg cgcggctctc
      301 cctgccggtg gtcgaacagg ccaatcatca gatcaaattc aacccgctgg ccaactggac
      361 ccacgaagac ctcgacgcct acatggccga acacgacctg ccggcccacc cgctggtggc
      421 ccagggtttc ccctcgatcg gctgctggcc ctgcaccaag ccggtggagg cgggagacga
      481 cgtccgcgcc ggccgctggg cggacaccga caagaccgaa tgcggtatcc acatcgcccg
      541 cgcgccgggc gcggtgagca atgtcggcgg cgacatttga cgcggcgcga aagagcgtag
      601 atcagcgatg aatgacatct ccctggcccc cgcgccggcg cctgtgaagg ctggcggcgc
      661 cttcttcgtc gagaccgtga cctgggtcca gcactggacc gagagcctgt tctcgttccg
      721 caccacgcgg gacccggcgc tccgcttctc cagcggccag ttcgtcatgg tcgggctgga
      781 gaaggaggac ggcaaaccct tggtgcgcgc ctattccatc gcctcgccgt cctggcatga
      841 ggagctggag ttctattcga tcaaggtggc cgacggcccg ctcacctcgc gcctgcagaa
      901 gatccaggtg ggtgaccagg tgctgatcgg ccgcaagccc accggcacgc tcgttctgga
      961 tggcctgaga cccggcaagc ggctctacat gctgggcacc ggcacggggc tggccccctg
     1021 gctgtcgctg gcccgcgacc cggacgtcta tgagcgcttc gacgaggtga tcgtcactca
     1081 taccgtgcgc aatgtcgccg acctcaacta ccgcgacctg ttgtccggcg cgctcgccga
     1141 agacgagctg ctgggcgagc tgatcgggcc gaagctcaaa tactatccga cggtcacccg
     1201 cgagccgttc cagacgaagg gccggatcac cgacctgatc gcctcgggcc agttgttccg
     1261 cgaccttggc acgccgccct tcgacaaggc cgtggaccgg gtgatgctct gcggcggccc
     1321 ctcggtcctg gccgacctga agcagcagct catcgacctc ggctatgagg aaggctccat
     1381 cgccagcccc ggcgacttcg tcctcgagcg ggccttcgtc gagacctagc tggcggccac
     1441 cgagcgacaa gcccgggcgt ctctgggtga gcggccccca ccgtggtaac gtgccgcgga
     1501 agcggagttg ccgatgaaga cgcgatcaac ccttctttcg cgccggatgt tcctgccggg
     1561 ttccgctgcg ctcgccgtgg gactgacaac ggctcgcctg gcgagcgccg acgatgtcca
     1621 acctctcgcc agggtgagcg gctttcccca aatgccgacc ggattcagcg gggtgacgcc
     1681 ctgcggctcc tacgcgccac ccgccgagat cgccagtttc ggtcggatcg cgcccgcgaa
     1741 cgagcccggc gaggcccttc agatcagcgg cgcgatctat cagcatggcg ggaagaagcc
     1801 ggcgtctgac gtgaaggtct tcgcgtatca caccgacgcg cgcgggcgct acaatacgcc
     1861 gaatacgcct ttccggcccc gcctctttgg ctgggtgaag agtgacgccc aggggcgata
     1921 tggtttcgcg accatcaagc cggctcccta tcccgaactg gacacgccga cccacattca
     1981 cgtcagcctc tacgcggccg atttgccgga atattgggtc gacgattact ggttcgccgg
     2041 cgaccccctg atcacgccca ggcagcgcgg tttgcttacc ggccgaggcg ggggcgggga
     2101 aaccttgagg cttgtgcggg gatccgatgg cgtccttcgg gggacgcgcg acttcatcct
     2161 ggaacacgtc caggtcagtg gcggctgcaa gctctatcgg agctagaccg agcca
//
LOCUS       DATAJL010000761         4007 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_70381,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000761 DATAJL010000000
VERSION     DATAJL010000761.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4007
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70381"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..881
                     /locus_tag="VHN39_14500"
     CDS             <1..881
                     /locus_tag="VHN39_14500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018113097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817603.1"
                     /translation="VDPCVGWVSADPVRLRQMLFNLVGNAVKFTLTGGVEVRVRLSGG
                     DDRQCLRVEIEDTGIGIPLTVQDSLFQRFHQADRSTTRRFGGSGLGLAISRKLAELMG
                     GEIGLMSQEGCGSTFWFEIDAPPAQAPVEIDAPEVGFLQGVRVLVVEDNQTNRMIATM
                     MLENLGAVVETANDGAQGVEAARRAGYDIIFMDIQMPVMDGIAATQAIRQLPGPASRT
                     PIIAMTANAMAHQQQVYLDAGMNGSIAKPYTPSALLTEIARVSSDEDISVAATSVDGA
                     NVGHGEAGVARPHAVG"
     gene            1115..2407
                     /locus_tag="VHN39_14505"
     CDS             1115..2407
                     /locus_tag="VHN39_14505"
                     /inference="COORDINATES: protein motif:HMM:NF013080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEX2817604.1"
                     /translation="MKRPPNFIIVLCDDLGYGDVSIYGPGGIKTPNVERMAREGVVLT
                     DYYAPANLCSPSRAGLLTGRYPVRTGLGYEVIMQQDDRGLPLSEVTIAKALKPAYATA
                     LFGKWHLGHLGASWPPTRHGFDAFFGIPYSHDMAPLSLFEAHAGSDEVTRSAVDYPQL
                     QQQFYEHTERFIEANKDRPFFVELALSAPHLPEHPHAPFDATTYAGPYGAVVAEIDSI
                     VGRLMAKLRALKLENDTVVIFTSDNGPWFEGSPGWLRERKGGGGYDGGYRVPFVAWAP
                     GRIPAGRRVSSMIMGIDMLPTFRAMAGMAPLAGVALDGRDVTDVLTKGAASPHEELVL
                     FDNEVPVAIRTQDWKYVDAIYYRDKKLPMSLFPYQELYDERTGRAENYSVAEGHPEVA
                     KAMKARLDAAKATFAPYKHADIPQAFKTLNAQFAHIQD"
     gene            complement(2419..3933)
                     /locus_tag="VHN39_14510"
     CDS             complement(2419..3933)
                     /locus_tag="VHN39_14510"
                     /inference="COORDINATES: protein motif:HMM:NF015116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2817605.1"
                     /translation="MPLTDDIRDLIEHETTEAQALLRDLATALPRSVEAHLLLAISHL
                     RRLEFDQALTYFRETAELDPKNDEALRNVAFCLLAMGDNEGALAAYRQAFATLADAGA
                     LRSIGLLSHRLGRVDEAIAAYERLLAKAQPTSKQVPYTLQGLAFALRDAGRPIAADQA
                     MRQLIDRFRREPVSIASGLVARNSADDFHEWSPYADKSRLAAALTARQAADPAGRFPE
                     SFVLPADKKALQAFAAGPNAPPLYIVKPIRSSGGQGISVTADLKAPLARDDVVVQRYI
                     DRPHLIEGRKGHCRIYGLIALAEPLRAYVYSEGIVRIAPELYDPDPSRAGGTSMHVTN
                     TALHLDHPALVIDQDPAQEDSGAIRSLSALLRRMTAEGLDGQAAFGEIKALVEWFVRL
                     LAADGLFARQAASAPPRAFAPKLFGLDVLIDAEGHPWLIEMQRSPAARGAPLVDRINS
                     EMFNTVFRMTHGLLIDDATPPELIAALRTDDAARRRREAEIEMANRGKFVPLEL"
BASE COUNT          643 a         1299 c         1425 g          640 t
ORIGIN      
        1 cggtggaccc gtgcgtgggc tgggtgtccg ccgatcccgt tcgacttcgg cagatgctgt
       61 tcaaccttgt cggaaacgcc gtgaagttca ccttgaccgg cggcgtcgag gtccgtgtca
      121 ggctgagcgg cggcgatgac cggcaatgtc ttcgggtcga aatcgaggac actggcatcg
      181 ggatccccct cactgttcag gacagcctgt ttcagcgctt ccaccaggcg gaccgctcca
      241 cgacgcggcg ctttggcggc tcgggactgg gcctggctat cagccgcaag ctcgcggaac
      301 tgatgggggg cgagatcggc ttgatgagcc aggaaggctg cggctcaacc ttctggttcg
      361 aaatcgatgc gccgccggcg caggcgcctg ttgagatcga tgcccccgag gtcggtttcc
      421 tgcaaggcgt gcgcgtcctg gtggtcgagg acaatcagac caatcgcatg attgcgacca
      481 tgatgctgga gaaccttggc gccgtggttg agaccgccaa tgatggcgcc cagggcgtcg
      541 aagcagctcg tcgcgctggc tacgatatca tcttcatgga cattcagatg ccggtcatgg
      601 acggcatcgc cgcgacccag gcgatccgac aactgccggg gcccgcatcg cggactccga
      661 tcatcgccat gacggccaac gccatggccc accagcaaca agtctacctc gatgccggca
      721 tgaatggcag catcgccaag ccgtacactc cgtcagcctt gctcacagag atcgcgcgcg
      781 tctcctcgga tgaagacatc agcgtcgcgg cgacctcagt cgatggcgcg aatgttggcc
      841 atggcgaagc cggtgtggcc cgaccgcatg cggtcggatg aagtcaggaa atttcgcgcc
      901 gccacagtca gcgcccgtct tgggggatag cggggtcgct ccgcgctcac ggctcaaaaa
      961 tcgtgaacac tgattcgaga tcgaggcatt cggggttacg gtgacgctgc tggctgacgc
     1021 gcctcggggg gactgatccc tgaaccgcag caagctgctg gccgccgggg ccgccaacgc
     1081 cctgctcgcc gggagcgcta cccgtgccgc gccggtgaag cgaccgccga atttcatcat
     1141 cgtgctctgt gacgaccttg ggtacgggga cgtcagcatc tatgggccgg gcgggatcaa
     1201 gacgccgaac gtggagcgga tggcgcgcga gggggtggtg ctcaccgact actatgcgcc
     1261 ggccaatctc tgcagcccgt cgcgggcggg gctgctcacc gggcgctatc cggtgcgcac
     1321 gggcctcggc tacgaggtga tcatgcagca ggacgaccgg ggactgccgc tctctgaggt
     1381 gaccatcgcc aaggcgctga agccggccta tgccacggcc ctgttcggca agtggcactt
     1441 ggggcacctg ggcgcctcct ggccgccgac caggcatggc ttcgacgcct tcttcggcat
     1501 tccctacagc cacgacatgg cgccgctgtc gctgttcgag gctcacgcgg ggtcggacga
     1561 ggtgaccagg agcgcggtcg actatccgca gctgcagcag cagttctacg agcacaccga
     1621 gcggttcatc gaggcgaaca aggaccgccc cttcttcgtc gaactggcgc tgtcggcgcc
     1681 gcacctgccg gagcatcccc acgcgccctt cgacgccacc acctatgccg gaccctatgg
     1741 ggcggtggtg gccgagatcg attccatcgt cggccgcctg atggcgaagc tgcgggcgct
     1801 caagctggag aacgacacgg tggtgatctt cacctccgac aacggcccct ggttcgaggg
     1861 ctcgccgggg tggctgcgcg agcgcaaggg cggcggtggc tatgatggcg gctaccgcgt
     1921 gccgttcgtg gcctgggcgc ctgggcggat ccccgccggg cggcgggtgt catcgatgat
     1981 catgggcatc gacatgctgc cgaccttccg ggccatggcc gggatggcgc cgttggcggg
     2041 cgtggcgctg gacgggcgcg acgtcaccga cgtcctgacc aagggcgcgg cctcgccgca
     2101 cgaggagctg gtgctgttcg acaacgaggt tccggtggcc atccgcaccc aggactggaa
     2161 gtacgtcgac gccatctact accgcgacaa gaagctgccg atgtcgctgt tcccctatca
     2221 ggagctctat gacgagcgga ccgggcgggc ggaaaactac agcgtcgccg agggccatcc
     2281 tgaggtggcc aaggccatga aggcccggct cgacgccgcc aaggcgacct tcgcgcccta
     2341 caaacacgcc gacatcccgc aggcgttcaa gacgctgaac gcccagttcg cgcacatcca
     2401 ggactgaagg cggcggcctc agagctcgag cggcacgaac ttcccgcggt tggccatctc
     2461 gatctccgcc tcgcggcggc ggcgcgcggc gtcgtcggtg cgcagcgccg cgatcagctc
     2521 cggcggtgtg gcgtcgtcga tcaggaggcc atgggtcatc cggaagacgg tgttgaacat
     2581 ctccgaattg atccggtcca ccaggggcgc gccgcgggcg gcgggcgagc gctgcatctc
     2641 gatcagccag ggatggccct cggcgtcgat cagcacgtcc aggccgaaca gctttggcgc
     2701 gaaagcccgc gggggcgcgc tggcggcctg gcgggcgaag aggccgtcgg cggccagcag
     2761 gcgcacgaac cattccacca gcgccttgat ctccccgaag gccgcctggc cgtccaggcc
     2821 ctcggcggtc atccggcgga gcagggccga caggctgcgg atcgcaccgg aatcctcctg
     2881 ggccgggtcc tggtcgatca ccagcgcggg gtggtccaga tggagggcgg tgttggtgac
     2941 gtgcatggag gtcccacccg ctcggcttgg gtcggggtcg tagagctccg gggcgatgcg
     3001 cacgatgccc tcggaataga cataggcccg cagcggctcg gccaaggcga tcaggccata
     3061 gatccggcag tgacccttgc ggccctcgat cagatggggg cggtcgatgt agcgctgcac
     3121 caccacatcg tcgcgggcta gaggggcctt gaggtcggcg gtgacgctga tcccctggcc
     3181 gccgctcgag cggatcggct tgacgatgta gagcggcggc gcgttcggcc cggcggcgaa
     3241 ggcctgcaac gcctttttgt ccgccggcag gacgaagctc tccgggaaac gcccggccgg
     3301 atcggccgcc tggcgggcgg tgagcgccgc ggccagccgc gacttgtcgg catagggcga
     3361 ccattcgtgg aaatcgtcgg cgctgttgcg cgccaccagg cccgaggcga tcgacaccgg
     3421 ctcgcggcgg aagcggtcga tcagctggcg catggcctga tcggcggcga tcggccggcc
     3481 cgcgtcgcgc aacgcaaagg ccaggccctg cagggtgtag ggcacctgct tgctggtggg
     3541 ctgggctttg gccagcaggc gttcgtaggc ggcgatagcc tcgtccacac gtcccagccg
     3601 gtgactgagc aggccgatgg accgcagggc gcccgcgtcg gccagggtcg cgaaggcctg
     3661 acggtaggcg gcgagcgcgc cctcgttgtc gcccatggcc agcaggcaga aggcgacgtt
     3721 gcgcagagcc tcgtcgttct tcggatcgag ctccgccgtc tcgcggaagt aggtcagggc
     3781 ctggtcgaac tccaggcggc gcaggtgcga gatggccagc agcaggtggg cctccaccga
     3841 gcgcggcagg gcggtggcga ggtcgcgcaa cagagcttgc gcctcggtgg tctcatgctc
     3901 gatgaggtcg cggatatcgt cggtcagcgg caagcgttga ggtctccggg ccggtcgcgg
     3961 cgtcttcctt atgcggacgc caatgcggcc tgtgcaagcg cctgaga
//
LOCUS       DATAJL010000762         2393 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_70397,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000762 DATAJL010000000
VERSION     DATAJL010000762.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70397"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            343..810
                     /locus_tag="VHN39_14515"
     CDS             343..810
                     /locus_tag="VHN39_14515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007664059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1203 domain-containing protein"
                     /protein_id="HEX2817606.1"
                     /translation="MSFIVSALPAEPFRPLFGLSDEALAERGVIRRKVDAKPGFPCRV
                     SLEDADPGETVLLLNYEHQSAETPFRASHAIYVREDGPEAELAENEVPHLFRHRVMSL
                     RAFSEAGMMLAAEVAPGAELEPAVERLLAKPDVAYLHAHYAGMGCYAARIDRT"
     gene            complement(807..1277)
                     /locus_tag="VHN39_14520"
     CDS             complement(807..1277)
                     /locus_tag="VHN39_14520"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2817607.1"
                     /translation="MTDPAIRWPDRFSPDRAPVHVVNAITIRASPETVWKVLIRAVDW
                     HGFYANASKVVIEGGGADLSDEARFTWRTFGVDLETQVQEFEPFERIAWLARGSLIEA
                     YHAWLIVPAPGGCRVITEETQHGLAAHAGRLIFPGRMERYHQLWLEGLARVARS"
     gene            1474..>2393
                     /locus_tag="VHN39_14525"
     CDS             1474..>2393
                     /locus_tag="VHN39_14525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit A"
                     /protein_id="HEX2817608.1"
                     /translation="MAEQLNFIRVRGAREHNLKDVSVDIPRGELVVLTGLSGSGKSSL
                     AFDTIYAEGQRRYVESLSSYARQFLELMSKPDVDLIEGLSPAISIEQKTTSRNPRSTV
                     GTVTEIHDYMRLLWARVGVPYSPATGLPIESQTVSQMVDKLTAIPDGERLYLLAPVVR
                     GRKGEFKKEFAEWQKAGFQRVKVNGEFFPIEDAPTLDKKFKHDIDIVVDRLVTKGGQE
                     TRYADSVEQALRLADGIAVAEWADKDPTEEEPKRLLFSEKFACPVSGFTISEIEPRLF
                     SFNNPYGACPACGGLGIEQHIDEDLVIPDK"
BASE COUNT          401 a          840 c          768 g          384 t
ORIGIN      
        1 ccgagacgat caggcccgcc tcgcgcacct gggcgtcggc gttgcggccg aacttcacca
       61 gccgcgttgc ggcctccgcg gacgtcaggc ccgcgaggtc gcagcccaga gtcgccgcgg
      121 cggccgatgg cgcctgcgtc cagaagggac ctttcgccat cgagtcacct ccgggtcgcg
      181 atcgacagcc gtgcgaccgt caacgtcgcg cccactctgg cgttcctggc ccgcgccgcc
      241 aagcgccacg cgatagcggc tttcggacat gtgttgattt cgccagattg gctccgaggc
      301 gtcccgcccc gatcttccgg gcgaagctaa ggagacgctc gcatgtcctt catcgtatcg
      361 gccctgcccg ccgagccgtt ccgcccgctg ttcggccttt ccgacgaggc cctggccgag
      421 cgcggtgtga tccgccgcaa ggtcgacgcc aagccgggct tcccctgccg cgtcagcctc
      481 gaagacgccg atcccggcga gacggtcctg ctgctcaact acgagcacca gagcgccgag
      541 acgcccttcc gcgcgagcca cgccatctat gtgcgcgaag acggccctga ggcggaactg
      601 gcggaaaacg aggttccaca cctctttcgc caccgggtga tgtcactccg cgccttcagc
      661 gaggccggca tgatgctggc tgccgaagtc gcgccgggcg cggagctgga gccggcggtc
      721 gagcgcctgc tggccaaacc ggacgtcgcc tacctgcacg cccattacgc cggcatgggc
      781 tgctacgccg cgcggatcga ccggacctag ctcctggcga cccgcgccag gccctccaac
      841 cacaactggt ggtagcgttc catgcggccg gggaagatca gccgcccggc gtgggcggcc
      901 aggccgtgct gggtctcctc ggtgatcacg cggcaaccgc cgggcgccgg cacgatcagc
      961 caggcgtgat aggcctcgat caatgacccc ctcgcgagcc aggcaatgcg ctcgaacggc
     1021 tcgaattcct ggacctgcgt ctccaggtcg acgccgaagg ttcgccaggt gaaccgggct
     1081 tcgtcgctga ggtcggctcc gcccccttcg atcaccacct tcgaggcgtt ggcgtagaag
     1141 ccgtgccagt ccacggcgcg gatcagcacc ttccagaccg tttccggaga cgcccggatg
     1201 gtgatggcat tgaccacatg cacaggcgcc cggtcgggcg aaaagcggtc gggccagcgg
     1261 atcgcggggt cggtcatggc tcgaccatag cccaccgcta cgcgctctgc tgccaccgtg
     1321 gtgtcagcaa tcggcgcgcg gcccagcgtc gcgtccggtt tgttcccact atgttcctat
     1381 gttatctctg agtctcggca ctacattagg aggtcgccga acggggcctc aggttgggac
     1441 ctccggacgg cctcaaagcg tttccgggaa agcatggccg aacagctgaa tttcatccgc
     1501 gtgcgaggcg cgcgcgagca caatctgaag gacgtcagcg tggacattcc gcgcggcgag
     1561 ctcgtggtgc tgaccggcct gtcggggtcg ggcaagagct cgctcgcctt cgacaccatc
     1621 tacgccgagg gccagcggcg ctacgtcgag agcctgtcgt cctatgcccg tcagttcctg
     1681 gaactgatga gcaagcccga cgtggacctg atcgagggcc tgtcgccggc gatttccatc
     1741 gagcagaaga ccaccagccg caatccgcgc tccaccgtcg gcacggtgac cgagatccac
     1801 gactatatgc gcctgctctg ggcgcgggtc ggcgtgccct attcgccggc caccggtctg
     1861 cccatcgaga gccagaccgt cagccagatg gtcgacaagc tgaccgccat tcctgacggc
     1921 gagcggctct acctgctggc ccccgtcgtc cgcggccgca agggcgagtt caagaaggaa
     1981 ttcgccgagt ggcagaaggc cggcttccag cgggtgaagg tcaacggcga gttcttcccc
     2041 atcgaggacg cgccgacgct cgacaagaag ttcaagcacg acatcgacat cgtcgtggac
     2101 cggctggtca ccaagggcgg ccaggagacc cgctacgcgg actctgtcga gcaggcgctg
     2161 cgcctagccg acggcatcgc ggtggccgaa tgggcagaca aggacccgac ggaggaagag
     2221 ccgaagcgcc tgctgttctc cgagaagttc gcctgcccgg tctccggttt caccatcagc
     2281 gagatcgaac ccaggctctt ctcgttcaac aacccctacg gcgcctgccc tgcctgcggc
     2341 ggtctcggca tcgagcagca tatcgacgag gacctcgtca ttcccgacaa gga
//
LOCUS       DATAJL010000763         3784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108813,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000763 DATAJL010000000
VERSION     DATAJL010000763.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108813"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VHN39_14530"
     CDS             <1..379
                     /locus_tag="VHN39_14530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar protein FlbA"
                     /protein_id="HEX2817609.1"
                     /translation="GQAAGVRFINVQYGDCAEELAAFRARGCEVIQPPDLDIREDIDG
                     LAALCAALDLTVCVANATGALVGACGLLAVLISPPAAWPRLGTERLPWYPRAHTVAAP
                     TFDAWGPTMAQAAALVAALAVRP"
     gene            423..1352
                     /locus_tag="VHN39_14535"
     CDS             423..1352
                     /locus_tag="VHN39_14535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2817610.1"
                     /translation="MSQLSDRSQLAVETRGLSKRFGQVWAARDVALRVEPGVIYGFLG
                     RNGAGKTTTIRLILGLLRPSAGQVRVFGHDVARDRLQAARQVGSLLEARATYDQLTGR
                     ENLDCTRRLLGLPAAEIDRVLEVVDIAGAAGRRVGHYSLGMRQRLGLARALLGAPRLL
                     VLDEPMNGLDPDGIRDMRAVIRDLPQRCGATILLSSHLLSEVEQTVTHIGLMHDGRLV
                     MQGPIGELLARAGPELFVRTDSPSRAMGLLSADGHTAVAEADGVLVQLREGDAQAARI
                     NRRLVEAGIEVAELSLRQASLEALYMRTQAEAA"
     gene            1352..2071
                     /locus_tag="VHN39_14540"
     CDS             1352..2071
                     /locus_tag="VHN39_14540"
                     /inference="COORDINATES: protein motif:HMM:NF024141.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2817611.1"
                     /translation="MLVSLYVEIRKLKGSLVLLLCGAAPTLVAGLLVLILLKRPNLDW
                     KDVMEGSTGLWSFFMLPMTIAALSALLAQIEHGPRAWDHMLALPVRRWRLFAAKGVVL
                     MGLIAAMSGLLALEIPAVIVLLQAVAPHKVPAGPFPWPTEARMLTQMWGASLFMGMIQ
                     LWVALRFRSFVVPLTLGLGGTFVAVAASGAKEGVYLPWLMPLNIISGTAANHALALEL
                     GLAGGVATFLLMLLHLSRREA"
     gene            2073..2606
                     /locus_tag="VHN39_14545"
     CDS             2073..2606
                     /locus_tag="VHN39_14545"
                     /inference="COORDINATES: protein motif:HMM:NF022636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEX2817612.1"
                     /translation="MSPPTETRTGADVDQFRRRNRQFAFAATAVITFIGAVGLAIIVV
                     VALRGHTMRAERLERLALSWAPTVCYLWALWALRRMFLTLARDGLSFGPAVVRALEAV
                     GWALGLGAVLTLAEAPLSVWLTHGVSPGGFATLNVPALTLGIIALALVALARMLRQAA
                     RLEAETVSLKAVLEDFI"
     gene            2608..2862
                     /locus_tag="VHN39_14550"
     CDS             2608..2862
                     /locus_tag="VHN39_14550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018083833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2817613.1"
                     /translation="MPVRITLDAMLAARGMTAKAVCERIGISETQLSLFRSGKVRGLR
                     FSTLSKLCLILECAPGDLLDYDRDEADLLVSREEKIEGEP"
     gene            complement(2867..3265)
                     /gene="acpS"
                     /locus_tag="VHN39_14555"
     CDS             complement(2867..3265)
                     /gene="acpS"
                     /locus_tag="VHN39_14555"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEX2817614.1"
                     /translation="MIIGLGSDLSDIRRIEKTLERHGERFTHRIFTELERTRSERKND
                     RAASYAKRFAAKEACAKALGTGMRRGVFWKDMGVINLRSGQPTMALTGGALARLLEIM
                     PPGHKPVVHLSLTDDHPYAQAFVIIEALPE"
     gene            complement(3262..>3784)
                     /locus_tag="VHN39_14560"
     CDS             complement(3262..>3784)
                     /locus_tag="VHN39_14560"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033856 - pyridoxine 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEX2817615.1"
                     /translation="PEMEAIALAHRPHAACLVPERREEVTTEGGLDVVKGHNGITPVV
                     RRLADARIRVSCFIDADLAQVAAAANAGSQVVELHVGAYCQAVRDRLPTAERLLDRIR
                     AAATEAHRLGLEVHLGHGIDYETVKPLAAIPEVMELNIGHFLIGEAIFIGLGPAIQRM
                     RALMDEARAVRAA"
BASE COUNT          484 a         1253 c         1423 g          624 t
ORIGIN      
        1 cggccaggcc gccggcgtgc gcttcatcaa tgtgcagtac ggcgactgcg ccgaggagtt
       61 ggcggccttt cgcgccagag gctgcgaggt gatccagccg cccgacctgg acatccgcga
      121 ggacatcgac ggtctggccg cgctctgcgc ggcgctcgat ctcaccgtct gcgtggccaa
      181 cgcgacgggc gcgctggtcg gcgcctgcgg cctcctcgcc gtcttgatca gcccgccggc
      241 ggcctggccg cggctgggga cagagcgcct gccctggtat ccgcgggccc acaccgtggc
      301 ggcgcccacc ttcgacgcct ggggccccac gatggcgcag gccgcggccc ttgtcgcggc
      361 tctcgccgtg cggccttgaa tttaagttag acttaaatta tcgatcctct tcggaggacg
      421 ccatgagtca gctatctgac aggtcgcagc ttgccgtcga gacgcgcggg ctaagcaagc
      481 ggttcgggca ggtctgggcg gcgcgcgatg tggcgctgcg ggtcgagccg ggggtgatct
      541 acggcttcct gggccgcaac ggggccggca agacgacaac cattcggctg atcctgggcc
      601 tgctcaggcc aagcgcgggc caggtgcggg tgttcggcca tgacgtggcg agggaccgcc
      661 tgcaggccgc gcggcaggtg gggtcgctgc tggaggcccg cgccacctat gatcagctga
      721 ccggccggga gaacctggat tgcacccgcc ggctgctggg cctccccgcc gcggagatcg
      781 accgggttct ggaggtggtg gacatagcgg gcgcggcggg ccgcagggtc ggccactatt
      841 cgctgggcat gcgccagcgg ctgggcctcg cccgcgccct gctgggcgcc cctcgcctgc
      901 tggtgctgga cgagccgatg aacggcctcg acccggacgg tatccgcgac atgcgcgcgg
      961 tgatccggga cctgccgcag cgctgcggcg cgacgatcct gctgtccagc cacctgctgt
     1021 ccgaggtcga gcagacggtc acccacatcg gcctgatgca cgacgggcgg ctggtgatgc
     1081 aggggccgat cggcgagctg ctggcgcgcg cggggccgga actcttcgtg cgcaccgaca
     1141 gcccgtcgcg ggccatgggc ctgctgagcg ccgatggcca caccgccgtg gcggaggccg
     1201 atggagtcct ggtccagctc cgcgagggcg atgcccaggc ggcgcggatc aaccggcggc
     1261 tggtggaggc cgggatcgag gtcgccgagc tgtccctgcg ccaggcgtcg ctggaggccc
     1321 tctacatgcg cacccaggcg gaggcggcgt gatgctcgtg tccctgtacg tcgagatccg
     1381 gaagctgaag ggctcgctgg tcctgctgct ctgtggggcg gcgcccacgc tggtcgcggg
     1441 gctgctggtg ctgatcctgc tgaagcggcc caacctcgac tggaaggacg tcatggaagg
     1501 ctccacgggc ctgtggtcct tctttatgct gcccatgacc atcgccgcgc tcagcgcgct
     1561 gctggcgcag atcgagcacg gtccccgcgc ctgggaccat atgctcgcgc tgcccgtgcg
     1621 ccgctggcgg ctgttcgcgg ccaagggtgt ggtgctgatg gggctgatcg cggccatgtc
     1681 ggggctgctg gccctggaga tcccggcggt cattgtactc ctgcaggccg tcgcgccgca
     1741 caaggtcccg gccgggccgt tcccatggcc gaccgaggcc aggatgctga cccagatgtg
     1801 gggcgcctcg ctgttcatgg gcatgatcca gctttgggtg gcgctccggt tccgcagttt
     1861 cgtggtcccg ctgacgctgg ggcttggcgg gaccttcgtg gcggtggccg cgagcggggc
     1921 gaaggaaggc gtctacctgc cctggctgat gccgctgaac atcatttcgg gcacggcggc
     1981 caaccacgcg ctggcgctcg aactggggct ggccggcggg gtggcgacgt tcctgctgat
     2041 gctcctccac ctcagccgcc gggaggcctg acatgtcccc tccaactgaa acaaggactg
     2101 gggccgacgt cgaccaattc cgccgccgca accgccagtt cgccttcgcg gccacggcgg
     2161 tcatcacctt tatcggcgca gtcgggctgg cgatcatcgt tgtggtcgcg ctgcgcggcc
     2221 acacgatgcg cgccgagcgg ctggaacggc tggcgctgag ctgggcccct acggtctgct
     2281 acctctgggc gttgtgggcg ctgcgccgca tgttcctgac cctggcgcgc gatgggctaa
     2341 gcttcggccc cgcggtggtc cgggctctgg aggccgtggg ctgggcgctc ggcctcggcg
     2401 cggtcctgac cctggccgaa gccccgctgt cggtgtggct gacccacgga gtcagtcccg
     2461 gcgggttcgc cactctgaat gtgcccgccc tgacgctggg gatcatcgcg ctcgccctgg
     2521 tcgccctggc gcgcatgctg cggcaggcgg cgcggctgga ggccgagacg gtgtcgctca
     2581 aggccgtgct ggaagacttc atctgagatg ccggtccgga ttacgctcga cgcgatgctg
     2641 gccgcgcgcg ggatgaccgc caaggcggtc tgcgaacgca tcggcatcag cgagacccag
     2701 ctgtcgctgt tccggtcggg caaggtgcgg ggcttgcggt tctcgacgct ctcgaagctc
     2761 tgcctgatcc tggagtgcgc gccgggcgac ctcctggact acgaccgcga cgaggccgac
     2821 ctgctggtca gccgcgagga gaagatcgag ggcgagccct aggggcctat tccggcaggg
     2881 cctcgatgat cacgaaggcc tgggcgtagg ggtggtcgtc ggtgaggctg aggtggacca
     2941 cgggcttgtg gccgggcggc atgatttcca gcaggcgggc cagggcgccg ccggtgagcg
     3001 ccatggtcgg ctggccggag cgcaggttga tcacgcccat gtccttccag aagacgccgc
     3061 ggcgcatgcc ggtgcccagc gccttggcgc aggcctcctt ggcggcgaaa cgcttggcgt
     3121 agctggcggc gcggtcgttc tttcgctcgg agcgggtgcg ttcgagctcg gtgaagatgc
     3181 ggtgggtgaa gcgctcgccg tggcgttcga gggtcttttc gatccggcgg atgtcggaga
     3241 ggtcggagcc caggccgatg atcacgccgc gcgcaccgcg cgggcttcat ccatgagtgc
     3301 gcgcatgcgc tggatggcgg ggccgaggcc gatgaagatc gcctcgccga tcaggaagtg
     3361 gccgatattg agctccatca cctcggggat ggcggccagc ggcttgacgg tctcgtagtc
     3421 gatgccgtgg ccgaggtgga cctccaggcc caggcgatgg gcctcggtcg cggcggcgcg
     3481 gatcctgtcc agcagccgct cggcggtcgg caggcggtcg cgcaccgcct ggcagtaggc
     3541 cccgacgtgc agctcgacca cctgggagcc ggcattcgcg gcagcggcga cctgggccag
     3601 gtcagcgtcg atgaagcagg agacgcggat cctggcgtcg gccagccttc gcaccacggg
     3661 cgtgatgccg ttgtgaccct tgaccacgtc gaggccgccc tcggtggtga cctcttcgcg
     3721 gcgctcgggg accaggcagg cggcgtgcgg ccggtgggcg agcgcgatgg cctccatctc
     3781 cggc
//
LOCUS       DATAJL010000764         8891 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64217,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000764 DATAJL010000000
VERSION     DATAJL010000764.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8891)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8891)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8891
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64217"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..1582
                     /locus_tag="VHN39_14565"
     CDS             56..1582
                     /locus_tag="VHN39_14565"
                     /inference="COORDINATES: protein motif:HMM:TIGR00711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX2817616.1"
                     /translation="MASQKDIANRLPITGALMLATLMNTLDSTIANVALPHMQGSVSA
                     SQDQIVWVLTSYIIATAIMTPLSGWLSQRFGRKNLFLISIAGFTAASILCGVATSLPE
                     LVIFRLLQGVAGASMMPLSQATMLDIYPQRMIPRVMSIWSAAVILGPIIGPTLGGWLT
                     EDFSWRWVFYINVPIGILAFLGIWTFMDRDDGGRQRPFDFLGFGALVLFIGGFQLLVD
                     RGPERDWFDSREIWIEAALCAAGLWIFIVQTMTAEHPFFHRDLAKDTNFVGTTLFGMF
                     VGVLLFSTSALLPSMMQNLLGYSALQAGVASMTRGVGSLIAFLAVPMLVARFGPRSVL
                     FVGILLSSTALWQMGQFDLSMTAGPIEWAGFIQGLGTGLLFAPLNTLAYAKLAPVHRT
                     EGTIVATMARSLGSSAGISVLQAMLIRDAAAAHSGLSTHVTATDPVLRWAMPQMFNLQ
                     SVPGLSALNGELTRQGTMISYDALFSGMAIGCLFLAPTLLWLKPPRGPPPSGPEMVAD
                     "
     gene            complement(1579..2514)
                     /locus_tag="VHN39_14570"
     CDS             complement(1579..2514)
                     /locus_tag="VHN39_14570"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HEX2817617.1"
                     /translation="MDRPAGKPGPGIRILASGLLGLGALALVLGVLIATKDHQDVRPV
                     VVVAYLAFFGAGLCSPAGAARLNWAGGMTVALAGIAPVLALSYLRLAMTDHIFLAIYI
                     LVALTGVLSAIAVRRLGAAGRPGYAVALAVVALLAAGGVAFAVMPAVVERLAYVAADR
                     TVTPFSVRTLDGAPISSQSWRGRVVVLSYWATWCPPCQAEMPQIAALQRKYAGDPRVV
                     IIALNAAYAGDTADKAKAFLQRRNIAGAQAIDDVKAPGKHAGEAAGSLGLKVVPTLFI
                     LDRAGKLVAVHTGYDGAEHLVTTLSEHIDGLLAHG"
     gene            complement(2618..2962)
                     /locus_tag="VHN39_14575"
     CDS             complement(2618..2962)
                     /locus_tag="VHN39_14575"
                     /EC_number="1.14.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEX2817618.1"
                     /translation="MIAVIFEVEPAAGRRQAYLDLAAQLKPALEAIDGFISIERFESL
                     TTEGKVLSLSFWRDEAAVAEWRQVEDHRRAQAAGRGGIFADYRLRVASVQRDYGMTER
                     AEAPADSRAANG"
     gene            complement(2959..3270)
                     /locus_tag="VHN39_14580"
     CDS             complement(2959..3270)
                     /locus_tag="VHN39_14580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIPSNAP family protein"
                     /protein_id="HEX2817619.1"
                     /translation="MTITCCIRYVIDPYKRDDFEEYARQWLTIIPALGGDLLGYFLPH
                     EGTNNVGMAMIGFDCLAAYETYRGRLRSDAASLANLKFAQDRKFILEETRTFLQPVRP
                     R"
     gene            3386..4090
                     /locus_tag="VHN39_14585"
     CDS             3386..4090
                     /locus_tag="VHN39_14585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2817620.1"
                     /translation="MKVGPDIATIAALLGDPARANMLTALCAGQALTAGELAREAGVT
                     AQTASSHLSKLSAGGLVEGRKQGRHIYYALTGPDVAGVIEALTGLAARTGHTRVRTGP
                     KEPALRRARVCYDHLAGDLGVAMLDSLTHRGMIVGSGETLVLTEKGEAFMAALGLDLP
                     ALTGLRRPLCKGCLDWSVRRSHLAGALGAALLERFYGLGWAAREPGTRIVSFSPRGLE
                     AFREIFGVLAETEATA"
     gene            4218..4616
                     /locus_tag="VHN39_14590"
     CDS             4218..4616
                     /locus_tag="VHN39_14590"
                     /inference="COORDINATES: protein motif:HMM:NF013920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold domain-containing protein"
                     /protein_id="HEX2817621.1"
                     /translation="MLPEPTPETRHFWDGCKAGELRLQRCTDCDGGSYFPPRPFCPRC
                     GSRKVEDYAASGQGVLWSYVINMRPRPDMGTEPYAIAVVKLAEGPQMMSNIVGCPQTP
                     EALQLDMPLKVTFSKQSDDISLPFFEPVKG"
     gene            4621..5769
                     /locus_tag="VHN39_14595"
     CDS             4621..5769
                     /locus_tag="VHN39_14595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HEX2817622.1"
                     /translation="MKQKSVAVVGAAETTKMGKIPDVSVIGLHADAALNAMADCGLKP
                     SDIDGVASAGISPVELAYYMGITPTYADGTSVGGCSFMLHVRHAAAAINEGLCSTVLI
                     THGESGRSRVGAGGRFGGGGGASLQGQFEMPYGPMGPPTMFTLPVLRYLKTRGYTVED
                     LATVAVIQREWAAMNPRASYKDPITVADVLASDMIAWPFTKLMCCLVTDGGGALILTS
                     AERARDFPQKPVYVLGTGESVETPMVSQMEDFASSKAFRVSGKKAFEEAGIGHADVDH
                     LMIYDAFAHLPLYGLEDLGFCKPGEAAGFVNGRNTAPGGKLPLNTNGGGLSYMHSGMY
                     GMYALQESVRQMRGVAPAQVPGAKISIAHGVGGMFAASGTIVFSNEAP"
     gene            5829..7277
                     /locus_tag="VHN39_14600"
     CDS             5829..7277
                     /locus_tag="VHN39_14600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CehA/McbA family metallohydrolase"
                     /protein_id="HEX2817623.1"
                     /translation="MGTGASAQPGPDLTLTGVMTRADHEHYREVPFKVPAGTTRLTVE
                     FAYTGKDQKSVIDLGVRDPVRYRGWSGGNKQSFTISEAEATPSYLPGPLPAGVWRLVL
                     GVPNLRPGAEARYTAKVSFEHGTSFAGFSATPIRPGPGWYRGDLHMHTAHSDGSCLSM
                     RGVHVPCPVFRALETAHARGLDFISVTDHNATAQNEALRELAPYYDDLLLIPGREITT
                     FYGHANVWGPTAPLDFQLGSTRAPTLAAIQTEVEKAHGLISINHPGQPSGEACMGCGW
                     TVKDTDYSRIQAIEVVNGGALRLPGGAESVISGIPFWEARLNAGFRITAVGGSDSHDA
                     DLAKVASAGPGYPTTVVHAQALSQPAILVALRAGHVFVDITGSRDKRLEVTAASGGQT
                     AEMGDALAAPVGAPIKVSVHVTHAAGASLSLAGDGPKPKLADATLNGDDETRGFEVSG
                     DGKRHWLRVDVRGPDGRLWLLGNPIYLNAPLR"
     gene            complement(7274..8818)
                     /locus_tag="VHN39_14605"
     CDS             complement(7274..8818)
                     /locus_tag="VHN39_14605"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817624.1"
                     /translation="MITSADGRQIVAFGRLNGPNWYLLLTYPKANVVASALRSASWVL
                     LIGGIASLIQALAVVLLARSSIVRPVERLAASCEPGDGVRPDVSDVERRKDEIGVLAT
                     SLRTEREKTEAAFASLEERVSERTAQLERANTEKSRFLANMSHELRTPLNGVIAISET
                     LAGQQTTAKGRELTDLIVSSGRLLERVLTDILDFSKIEAGEITLARDEFNLDRLVAGV
                     AELHRASAENKGLTFRWSIAPEAEGRYAGDTVRMTQVLSNLLSNAVKFTEAGEIALEV
                     IAFGDEVRFRVTDTGIGFDDETGARLFRRFEQADASIRRRFGGTGLGLAISRSLVELM
                     GGRIVVQSAVGRGSTFSVYVPLERLEGEAIDDSADHAPQLDISGARVLVAEDHPTNQK
                     VVELILESVGVTPVIVENGRLALDLLMKERFDVVLMDMQMPELDGLSATAMLRAFERE
                     QGLPRTPVIMLTANALDEHIRAGQEAGADLHLSKPIHAQALIESIMHAMSGHADNADG
                     EQSAVA"
BASE COUNT         1375 a         3159 c         2956 g         1401 t
ORIGIN      
        1 gagctacgcg cctccaccga gcggcgcaag ctctcggtct cgctggtcta gcgccatggc
       61 ctcgcaaaag gacatcgcca accgcctgcc gatcaccggc gccctgatgc tggcgacgct
      121 gatgaacacg ctggattcca ccattgccaa cgtcgccctg ccgcatatgc agggatccgt
      181 ctcggcgtcg caggaccaga tcgtctgggt gctgacgagc tacatcatcg ccaccgcgat
      241 catgaccccg ctgtccggct ggctgtcgca gagattcggc cgcaagaacc tgttcctgat
      301 ctcgatcgcc gggttcaccg cggcctcgat cctttgcggc gtcgccacgt ccctgcccga
      361 gctggtgatc ttccgcctgc tgcagggggt cgccggcgca tcgatgatgc cgctgtcgca
      421 agcgaccatg ctggacatct atccgcagcg gatgatcccg cgggtgatga gcatctggag
      481 cgcggcggtg atcctggggc cgatcatcgg cccgaccctg ggcggctggc tgaccgagga
      541 cttctcctgg cgctgggtct tctacatcaa cgtgcccatc ggcatcctgg ccttcctggg
      601 catctggacc ttcatggacc gcgacgacgg cggacggcag cggcccttcg acttcctggg
      661 gttcggagcg cttgtcctct tcatcggcgg cttccagctc ctggtcgacc gcgggccgga
      721 gcgggactgg ttcgattccc gggagatctg gatcgaggcc gccctgtgcg cggcgggcct
      781 gtggatcttc atcgtccaga ccatgaccgc cgagcatccc ttcttccacc gggacctggc
      841 caaggacacc aacttcgtcg gcaccaccct cttcggcatg ttcgtgggcg tgctgctgtt
      901 ttccaccagc gcgctgctgc cctccatgat gcagaacttg ctgggctatt ccgccctgca
      961 ggctggcgtc gccagcatga cgcgcggcgt gggctcgctg atcgccttcc tggcggtgcc
     1021 catgttggtc gcccggttcg ggccccgctc ggtgctcttc gtcggcatcc tgctctccag
     1081 caccgcgctc tggcagatgg gccagttcga cctgtccatg accgcggggc ccatcgaatg
     1141 ggcgggcttc atccagggct tgggaacggg tctgctgttc gcgccgctca acacgctggc
     1201 ttacgccaag ctcgcgccgg tccaccgaac cgaaggcacc atcgtggcga ccatggccag
     1261 aagcctgggc tccagcgccg gcatctcggt cttgcaggcc atgctgatcc gcgacgcggc
     1321 cgcggcccat tcgggcctct ccacccacgt gacggcgacg gatccggtgc tgcgctgggc
     1381 catgccgcag atgttcaacc tgcagtcggt ccccggcctc agcgcgctga acggcgagct
     1441 cacccgccag ggcacgatga tcagctacga cgccctcttc agcggcatgg cgatcggctg
     1501 cctgttcctg gcgcccaccc tcttgtggct caagccgccg cgaggaccac cgccgtcagg
     1561 gccggagatg gtcgccgact agccgtgcgc cagcaggccg tcgatgtgtt cggagagcgt
     1621 cgtcacgagg tgctcggcgc catcgtagcc agtgtgaacg gccaccagct tgcccgcccg
     1681 gtccaggatg aacagcgtcg ggaccacctt cagccccagg cttcccgccg cctcgcccgc
     1741 gtgttttcca ggcgccttga cgtcgtcgat cgcctgtgcg ccggcgatgt tcctgcgctg
     1801 gagaaaggcc ttcgccttgt cggccgtgtc gccggcatag gcggcgttca gggcgatgat
     1861 gaccacccgg gggtcgcccg cgtacttgcg ctgcagggcc gcgatctgcg gcatctcggc
     1921 ctggcaaggc gggcaccacg tcgcccagta ggaaagcacc acgacccggc cgcgccacga
     1981 ctgcgagctg atcggcgccc cgtccagcgt gcgcacgctg aacggcgtga cggtccggtc
     2041 ggcggcgaca taggccagcc gctcgacgac ggccggcatc accgcgaacg ccacgccccc
     2101 ggccgccagg agcgcgacga ccgccagggc gacggcgtag ccaggccgcc ccgccgcgcc
     2161 aaggcgccgc acggcgatgg cgctcagcac gccggtcagc gccaccagga tgtagatcgc
     2221 caggaagatg tggtcggtca tcgccaggcg gagatagcta agcgccagga ccggcgcgat
     2281 gccggccagc gcgacggtca tgccgcccgc ccagttgagc cgcgccgcgc cggccggtga
     2341 acagagtccc gcgccgaaga aggcgagata ggcgacgacc accacgggtc tgacgtcctg
     2401 gtgatccttg gtggcgatca ggacgccaag gaccagcgcc agggcgccca ggcccaggag
     2461 gccgctcgcg aggatccgta tgccgggccc cggcttccct gctggcctgt ccatcccgat
     2521 agtcctctcg cgacatcagc gcccgtgaag gcgcggccct gaatcggcga cgcggcgtcg
     2581 gctgccaagt tacctttgtg taagcttcag cgtggaccta gccgttggcc gcgcgcgaat
     2641 ccgccggcgc ctcggcgcgc tcggtcatgc cgtagtcgcg ctgcacgctc gccacccgca
     2701 gccggtagtc ggcgaatatc ccgccacgcc ccgccgcctg cgcccgccga tggtcctcga
     2761 cctgccgcca ttccgccacc gccgcctcgt cgcgccagaa ggagagcgac aggaccttgc
     2821 cctcggtcgt caggctctcg aaccgttcga tggagatgaa gccgtcgatc gcctccaggg
     2881 cgggtttcaa ctgggcggca aggtccagat aggcctggcg gcggccggcg gcgggttcga
     2941 cttcgaagat gacggcgatc atcgaggcct cacgggctgg aggaaggtac gggtctcttc
     3001 caggatgaac ttcctatcct gggcgaactt cagattggcc agggacgccg cgtccgaccg
     3061 cagccggccg cggtaggtct cataggccgc caggcagtca aaaccgatca tcgccatgcc
     3121 gacattgttg gtcccctcgt gcggcaggaa atagcccagc agatcgccgc ccagcgccgg
     3181 gatgatggtc agccactgcc gagcgtactc ttcgaaatcg tcgcgcttgt aggggtcgat
     3241 gacgtagcgg atgcagcagg tgatggtcat gggggcctct ccggaaacgg gccgccttcc
     3301 tagcccgcca gccctgccgg atgcttcgac cgcgctcgaa acctcgggca tggccgaacg
     3361 gccacgatgc gcctaagctc gaagcatgaa ggttggtccg gacatcgcca ccatcgccgc
     3421 cctgctgggg gatcccgcgc gggccaatat gctgaccgcg ctctgcgccg gccaggctct
     3481 caccgccggc gaactcgccc gcgaggctgg ggtcaccgcc cagacggcca gttcgcacct
     3541 ctccaagctc tccgccggcg ggctggtcga gggccgcaag caggggcggc acatctacta
     3601 cgcgctcacc ggccccgacg tggcaggcgt gatcgaggcg ctgacgggcc tggccgcccg
     3661 caccggccac acccgtgtcc gcaccgggcc caaggagccg gcgctgcgcc gcgcgcgggt
     3721 ctgctacgac cacctggccg gcgacctggg ggtggcgatg ctggatagcc tgacccaccg
     3781 gggcatgatc gtggggtccg gcgaaaccct ggtgctgacc gaaaagggcg aggccttcat
     3841 ggccgcgctg ggtctcgacc tgcccgcgct gacgggcctc cgccgcccgc tctgcaaggg
     3901 ctgcctggac tggagcgtcc gccgctcgca cctggccggg gccttgggcg ccgccctgct
     3961 ggagcggttc tatggcctgg gctgggcggc tcgcgagcct ggcacgcgca tcgtcagctt
     4021 cagcccccgg ggcctcgagg ccttccggga aatcttcggc gtcctggccg agaccgaagc
     4081 cacggcgtga caaggccctc ccctcacgcg aagcgtgaca agcaagaggg ggtcggcttt
     4141 ggtgcttgcg ccgtgatttg atacggccag cgatcacgcc atttccagag ggacggattt
     4201 cacagatgcc accacggatg ttgcctgaac ccacgccgga gacccggcat ttctgggacg
     4261 ggtgcaaggc gggcgagctt cgcctgcagc gctgcaccga ctgcgacggc ggaagctatt
     4321 tcccgccccg gcccttctgc cccaggtgcg gcagccgcaa ggtcgaggac tacgccgcca
     4381 gcggccaggg cgtgctctgg tcctacgtga tcaacatgcg cccgcgcccc gacatgggga
     4441 ccgagcccta cgccatcgcc gtggtgaagc tggccgaggg cccgcagatg atgagcaaca
     4501 tcgtgggctg cccgcagacc ccggaggccc tgcagctcga catgccgctg aaggtgacct
     4561 tctccaaaca gagcgacgac atctcgctcc ccttcttcga accggtgaag ggttaagcgc
     4621 atgaaacaga aatccgtagc ggtggtcggc gcggccgaga ccaccaagat gggcaagatt
     4681 cccgacgtct cggtgatcgg cctgcacgcc gacgcggcgc tgaacgccat ggccgactgc
     4741 ggcctcaagc cctcggacat cgacggcgtc gcctcagccg gcatcagccc ggtggaactc
     4801 gcctactaca tgggcatcac gcccacctat gccgacggca ccagcgtcgg cggctgctcc
     4861 ttcatgctgc acgtccgcca tgcggcggcg gcgatcaacg aggggctctg ctcgaccgtc
     4921 ctgatcacac acggtgaatc gggacgcagc cgcgtcggcg ccggcggccg cttcggcggc
     4981 ggcggcggcg ccagtctgca gggccagttc gaaatgccct acggccccat gggcccgccg
     5041 accatgttca cgcttcccgt gcttcgctat ctcaagaccc gcggctacac ggtcgaggat
     5101 ctggccacgg tggcggtgat ccagcgggag tgggcggcca tgaacccgcg cgccagctac
     5161 aaggacccga tcaccgtcgc cgacgtgctg gcctccgaca tgatcgcgtg gcccttcacc
     5221 aagctgatgt gctgcctggt caccgacggc ggcggcgcgc tgatcctgac cagcgccgag
     5281 cgggccaggg acttcccgca aaagcccgtc tacgtcctgg gcacaggcga gagtgtcgag
     5341 acgcccatgg tgagccagat ggaggacttc gcctcgtcaa aggccttccg ggtctccggc
     5401 aagaaggcct tcgaggaggc cggcatcggc cacgccgacg tcgaccacct gatgatctac
     5461 gacgccttcg cccacctgcc gctctatggg cttgaggacc tgggcttctg caagccgggc
     5521 gaggccgccg ggttcgtcaa tggccgcaat accgcgccgg gcggcaagct gccgctcaac
     5581 accaacggcg gcggcctctc ctacatgcac tccggcatgt acggcatgta tgcgctccag
     5641 gagtccgtcc gccagatgcg cggcgtcgcc ccggcccagg tccccggcgc caaaatcagc
     5701 atcgcccacg gcgtcggcgg catgttcgcc gcctcgggca ccatcgtgtt ctccaacgag
     5761 gcgccctgag cactcgggcg catctgaggg cgggcgcggc ggttctggct gctgcgctcg
     5821 cggtgctcgt ggggacgggc gcgtctgccc agcctggtcc cgacctcacc ctcaccggcg
     5881 tcatgacccg cgcggatcac gagcactacc gcgaagtccc gttcaaggtc ccggcaggaa
     5941 ccacgcggct gaccgtcgag ttcgcctaca ccggcaagga ccagaagtcg gtcatcgacc
     6001 tgggcgtgcg cgaccccgtg cgttaccgcg gctggagtgg cggaaacaag cagagcttca
     6061 cgatctccga ggccgaggcg acgccgtcct atctgcccgg gccgctgccg gcgggcgtct
     6121 ggagactggt gcttggcgtt ccgaacctgc ggcccggcgc cgaggcgcgc tataccgcca
     6181 aggtctcctt cgagcatggg acgagcttcg cgggcttcag cgcgacgccg atcaggccag
     6241 gccccggctg gtatcgcggc gacctgcaca tgcacaccgc ccactccgac ggctcgtgcc
     6301 tctccatgcg cggggtacat gtcccttgcc cggtgtttcg ggcgctggag accgcccacg
     6361 cccgcggcct cgacttcatc tcggtcaccg accacaacgc caccgcccag aacgaggcgc
     6421 tccgcgagct cgccccctac tacgacgacc tgctgctgat ccccggccgc gagatcacca
     6481 ccttctacgg ccacgccaac gtctgggggc cgaccgcgcc cttggacttc cagctcggct
     6541 caacccgcgc gccgacgctg gcggccatcc agacggaggt ggaaaaggcc catggcctga
     6601 tctcgatcaa ccatcccggg caaccctccg gcgaagcctg catgggctgc ggctggacgg
     6661 tgaaggacac cgactattcc cgcatccagg cgatcgaggt ggtgaacggc ggggcgctcc
     6721 ggctgcccgg cggggcggag agcgtgatct ccggcattcc gttctgggag gcgcgcctca
     6781 acgccggctt ccgcatcacc gcggtcggcg gctccgacag ccatgacgcg gacctggcca
     6841 aggtggcgtc agctggcccc ggctacccga ccaccgtggt ccatgcgcag gcgctctcgc
     6901 agccggcgat cctggtcgcc cttcgcgccg gccacgtctt tgtcgacatc accggcagcc
     6961 gcgacaagcg acttgaggtc accgcggcct ccggcggcca gaccgccgaa atgggggatg
     7021 cgctcgcggc gcctgtcggc gccccgatca aggtgagcgt ccacgtgacc cacgcggcag
     7081 gcgcttcgct gtcgctggcg ggagatgggc caaagcccaa gctggcggac gcgacgctca
     7141 acggcgacga cgagacccgc gggttcgaag tttcaggcga tggcaaacgt cactggctgc
     7201 gcgtcgacgt gcgcggtccc gacggcaggc tgtggctgct gggaaaccca atctacctga
     7261 acgccccgct tcgttaggcg accgcgctct gctcgccgtc ggcgttgtca gcgtggcctg
     7321 acatggcgtg catgatgctc tcgatcagcg cctgggcgtg gatcggcttg gagaggtgca
     7381 ggtcggcgcc cgcctcctgg ccggcgcgga tgtgctcgtc cagcgcattg gcggtcagca
     7441 tgatcaccgg ggtgcgcggc aggccctgtt cgcgctcgaa ggcgcgcagc atggcggtag
     7501 ccgacaggcc atcgagctcg ggcatctgca tgtccatcaa gacgacgtcg aaccgctcct
     7561 tcatcaggag gtccaacgcc agccgaccgt tctcgacgat caccggggtg acgcccaccg
     7621 attccaggat cagctcgacg accttctggt tggtcggatg gtcctcggcc accagcaccc
     7681 gcgcgccgga gatatcgagc tgcggggcgt ggtcggcgct gtcgtcgatc gcctcgccct
     7741 ccagccgctc cagcggcaca tagaccgaga aggtcgagcc gcggcccacc gcggactgca
     7801 ccacgatgcg cccgcccatc agttccacca gcgaacggct gatcgccaag ccaaggcccg
     7861 tgccgccgaa ccggcggcgg atcgatgcgt cggcctgctc gaagcgccgg aacaggcgcg
     7921 cgccggtctc gtcgtcgaag ccgatgccgg tgtcggtgac acggaagcgg acctcgtcgc
     7981 cgaaggcgat gacttccagc gcgatctcgc cggcctcggt gaacttcacg gcgttggaca
     8041 acaggttgga gagcacctgg gtcatgcgta cggtgtcgcc agcgtagcgc ccctcggcct
     8101 cgggtgcgat ggaccagcgg aaggtcaggc ccttgttctc cgccgaggcg cgatgcaact
     8161 cggcgacgcc ggccaccagg cgatccaggt tgaactcgtc gcgggcgagc gtgatctcgc
     8221 cggcctcgat cttggagaaa tccaggatgt cggtaagcac gcgctccagg aggcggcccg
     8281 acgagacgat cagatcggtg agctcacgtc ccttggccgt ggtctgctgt ccggccaggg
     8341 tctcggagat ggcgatcacc ccgttcagcg gggtgcgcag ctcatggctc atattggcca
     8401 ggaaacggga tttctcggtg ttggcgcgtt ccagctgggc ggtgcgttcg ctgacccgct
     8461 cctccagcga ggcgaaggcg gcctcggtct tctcccgctc ggtgcgcagc gaggtggcga
     8521 gcacgccgat ctcgtccttg cggcgctcca cgtcgctgac gtcggggcgg acgccatcgc
     8581 cgggttcgca cgaggcggcc agccgctcga ccggccgcac gatgctgctg cgggccagaa
     8641 gcaccacggc cagggcctgg atcagcgaag cgatgccgcc gatcagcagc acccaggacg
     8701 ccgagcgaag agccgaggcc accacattgg ccttgggata ggtgagcagc aggtaccagt
     8761 tgggtccgtt caggcggcca aacgccacga tctggcggcc gtcggcgctg gtgatcaccc
     8821 cgttgtcacg gccggtcttg gcagcgcggg cgaccaggtc ggtgagcgcg aacttcttct
     8881 gatattacgc c
//
LOCUS       DATAJL010000765         2637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96661,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000765 DATAJL010000000
VERSION     DATAJL010000765.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96661"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1466
                     /locus_tag="VHN39_14610"
     CDS             <1..1466
                     /locus_tag="VHN39_14610"
                     /inference="COORDINATES: protein motif:HMM:NF012485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II and III secretion system protein family
                     protein"
                     /protein_id="HEX2817625.1"
                     /translation="VSVLESMTMPRNLTAALCAALTLLSAGAVAAPAFADALPSEAAI
                     SRVISVPRDKSLSFRLDEPATKIVVSQPDIAEVVATTDRSFYVRGIDVGSTNLLVYGP
                     GGRLMEVIDVRVGVDAASLERDLAQVLPNEHIKVQSLGDGVMLTGDVSNPGVAIKATA
                     IAQKFSPDGVTSMLHIGNSQVVLEVRILEATRSNSRDTGVGLEVGNNSFAFQLGANVV
                     GHPIIAPGGQFPLVGLIGTTPPEGALGLVGAIGHTSVNAQLAALEEKGLIRTLARPNL
                     VALSGEKATFLAGGEFPFPVPSGVNLITIEFRTYGVKLDFTPTVLEDGKIRLVVAPEV
                     SELDQTNTVRVDNVTIPALTIRRTSTTVELHDGESLTIGGLFQHGYSNQINQIPGLGS
                     IPILSALFRSTRYQRNETELLIIVTPHILTQADINSSKDKNLAGAEPSGMDLLLTGKA
                     LDKAMARDLRGPIDEPAPAPQPQLRGAISPTVPASGK"
     gene            1506..>2637
                     /locus_tag="VHN39_14615"
     CDS             1506..>2637
                     /locus_tag="VHN39_14615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817626.1"
                     /translation="MSGRRVLVLGAALLPLSQDPLTGAHVELGGLDRLIGVGPADADL
                     IIIDADAWDGPGMAAGILALTMCPAPPPVLLVGANLPTSVVRNLLRLERSDVLDAPYS
                     SDNIAAAINGLMVEKAAPAPVPVQGGHVARCWAVTGAVGGSGATTLAIEIATQLCVRQ
                     NKPKSVCLIDLNLADGSAAAYLGSTPAMRLGDLTAAAARLDAAMLQAFVTPVTDRLDL
                     LAAARDPVAFDTVPREAILRMLEIACESYDWVILDMPRHRRSWSLDVLGGCDEILVVS
                     ELTVPALLAARSLSDEIERDMGSGEKPKIVLNRVAARMFGPAPSFAEAERALQRKAEA
                     GVSSDWEAAAASVNLGGPIATHRPKSKIVKDIQSLVDRLAAQP"
BASE COUNT          405 a          992 c          840 g          400 t
ORIGIN      
        1 tcgtgagtgt cctggagtct atgaccatgc cgcgcaacct caccgccgcg ctctgcgccg
       61 ccctgacgct gctgagcgcc ggcgcggtcg cggcgccggc cttcgccgac gccctgccga
      121 gcgaagccgc tatcagccgc gtcatctccg tgccgcgcga caaatcgctg tccttccgcc
      181 tggatgagcc ggccaccaag atcgtcgtgt cgcagcccga catcgccgag gtggtggcca
      241 ccaccgaccg cagcttctac gtccgcggca tcgacgtcgg gtcgaccaac cttctggtct
      301 acggccccgg tgggcggctg atggaagtga tcgatgtgcg ggtcggcgtc gacgccgcca
      361 gcctcgagcg cgacctcgcc caggtgctgc ccaacgagca catcaaggtc cagagcctcg
      421 gcgacggcgt catgctgacc ggcgacgtct ccaacccggg tgtggcgatc aaggccaccg
      481 cgatcgctca gaaattctcc cccgacggcg tcacctcgat gctgcatatc ggcaactcgc
      541 aggtggtgct ggaggtccgc atccttgagg ccacccgctc gaactcgcgg gacaccggcg
      601 tcggcctcga ggtgggcaac aactccttcg ccttccagct gggcgccaac gtcgtcggcc
      661 acccgatcat tgcgcccggc ggccagttcc cgctggtggg cctgatcggc acgacgccgc
      721 ccgaaggcgc gctcgggctc gtcggcgcga tcggccatac ctccgtcaac gcccaactgg
      781 cggcgctgga ggagaaaggc ctcatccgca ccctggcgcg gccaaacctg gtggcgctgt
      841 ccggcgagaa ggccaccttc ctggcgggcg gcgaattccc cttcccggtg ccgagcggcg
      901 tgaacctgat caccatcgaa ttccgcacct acggcgtgaa gctcgacttc acccccacgg
      961 tcctggagga cggcaaaatc cgtctggtgg tggccccgga ggtcagcgag ctcgatcaga
     1021 ccaacaccgt gcgcgtggac aacgtcacca tcccggcgct gaccatccgg cgcacctcga
     1081 ccacggtcga actgcacgac ggcgagtccc tgaccatcgg cggcctgttc cagcacggct
     1141 attccaacca gatcaaccag atcccgggcc tcggctcgat cccgatcctg tcggcgctgt
     1201 tccgctcgac gcgctaccag cgcaacgaga ccgagctcct gatcatcgtc acgccgcaca
     1261 tcctgaccca ggccgacatc aactcttcca aggacaagaa ccttgccggc gccgagccca
     1321 gcggcatgga cctgctgctc accggcaagg cgctcgacaa ggcgatggcc cgcgacctgc
     1381 gcggtcccat cgacgagccg gcgcccgccc cgcagccgca gcttcgcggc gccatcagcc
     1441 ccaccgttcc cgcgtccgga aagtaagcgt cccctatgag ttccgcccat ccacacgccg
     1501 tatccttgag cgggcgccgc gtcctcgttc tcggcgcagc gctcctgccc ctgtcgcagg
     1561 atccgctgac cggcgcgcat gtggagctgg gcgggctcga tcgactgatc ggcgtggggc
     1621 cggccgatgc cgacctgatc atcatcgacg ccgacgcctg ggacgggccg ggcatggccg
     1681 cgggcatcct ggcgctgacc atgtgcccgg cgccgccgcc ggtcctgctg gtcggcgcca
     1741 acctgcccac cagcgtggtc cgtaacctgc tcaggctcga gcgttccgac gtcctcgacg
     1801 ccccgtacag cagcgacaac atcgccgccg ccatcaacgg cctgatggtc gagaaagcgg
     1861 cacctgcgcc ggtcccggtc cagggcggcc acgtggcccg ctgctgggcg gtcaccggtg
     1921 cggtcggcgg ctcgggcgcg acgactctgg cgatcgagat cgccacccag ctctgcgtcc
     1981 ggcagaataa gcccaagagc gtctgcctga tcgacctcaa cctggccgat ggttcggccg
     2041 cggcctatct gggctcgacg ccggccatgc gcctgggcga cctgaccgcg gccgccgcgc
     2101 gcctcgacgc cgccatgctg caagccttcg tgaccccggt gaccgacagg ctcgacctgc
     2161 tggccgccgc gcgagatccc gtggccttcg acaccgtgcc acgcgaggcg atcctgcgga
     2221 tgctggagat cgcctgcgag agctatgact gggtaattct cgacatgccg cgtcaccgcc
     2281 ggtcctggag cctcgatgtg ctgggcggct gcgacgaaat cctggtggtc tccgagctga
     2341 ccgtgccggc cctgctggcc gcccgctcgc tgtccgacga gatcgagcgg gacatgggct
     2401 ccggcgagaa gccgaagatc gtgctgaatc gcgtggccgc gcgcatgttc ggccccgcgc
     2461 cttcctttgc ggaagccgag cgggccctgc agcgcaaggc cgaggcgggc gtcagctccg
     2521 actgggaagc ggccgcggcc tccgtcaacc tgggcggccc catcgccacc catcggccca
     2581 agtcgaagat cgtcaaggat atccagtcac tggtcgaccg gctggccgcc cagccgg
//
LOCUS       DATAJL010000766         1527 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96666,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000766 DATAJL010000000
VERSION     DATAJL010000766.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1527)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1527)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1527
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96666"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1008
                     /locus_tag="VHN39_14620"
     CDS             <1..1008
                     /locus_tag="VHN39_14620"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2817627.1"
                     /translation="LLIAVADLHELIVTPVLSLLVAAVGAYTLVYAYRFVIEDREKRW
                     IQHAFRHYLAPALVDRLQENPDALKLGGEERWVTVMFTDIAGFTTISEGLKETPDRLV
                     DLMNRYLTVMSEVIARHDGYVDKFIGDAVMAVWGAPLAVENAERKAVDAALDCQAALE
                     VFNREVVVDFLPSGRMGTRIGVATGPAIAGNMGSTQRLNYTVTGDMVNLAARLEGANK
                     EYGTAIMISELTAQAVGDGYVLRRLDRLIVKGKTEPIVVFEVLGRRGEVVETVLARLA
                     EFERALGLHDARDFAAAMAVFRKLAPADPPSRVYADRCEAYLVTPPPADWQGEFALKT
                     K"
     gene            1008..>1527
                     /locus_tag="VHN39_14625"
     CDS             1008..>1527
                     /locus_tag="VHN39_14625"
                     /inference="COORDINATES: protein motif:HMM:NF013594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEX2817628.1"
                     /translation="MGDIMDDTSRIGRRGLLTGVAAGAALGASLGATPALAQFPSLPG
                     MPSLPGGGNLGDLVGQVGGVISGMNISEADEIAMGEGYYERFIDQSGGLYNSRADQEA
                     LRAFAQVVMGTSKRPTLPWQIALVDNETVNAWALPGGKIGVHKGLIRYVAGPDELAAV
                     ISHEVGHAELSHG"
BASE COUNT          242 a          498 c          545 g          242 t
ORIGIN      
        1 ctgctgatcg cggttgcgga cctgcacgaa ctgatcgtga cgccggtgct gagcctgctg
       61 gtggcggcgg tcggggccta taccctggtc tacgcctacc gcttcgtgat cgaggaccgg
      121 gagaagcgct ggatccagca cgctttccgc cactacctgg cgcccgctct ggtcgatcga
      181 ctgcaggaga atcccgacgc cctgaagctc ggcggcgagg aacgctgggt caccgtgatg
      241 ttcaccgaca tcgccggctt caccaccatc agcgagggcc tgaaggagac gcccgaccgg
      301 ctggtggacc tgatgaaccg ctatctgacg gtaatgtccg aggtgatcgc ccgccacgac
      361 ggctatgtgg acaagttcat cggcgacgcg gtgatggccg tctggggcgc gccgcttgcg
      421 gtggagaacg ccgagcgcaa ggcggtggac gcggcgctgg attgtcaggc cgcgctggag
      481 gtcttcaacc gcgaggtggt cgtggacttt ctgccgtccg gccggatggg cacccggatc
      541 ggggtggcca cggggcccgc gatcgccggc aacatgggct cgacccagcg gctcaactac
      601 acggtgaccg gcgacatggt gaacctcgcc gcgcggctgg agggcgccaa caaggaatac
      661 ggcaccgcga tcatgatcag cgagctcacc gcccaggcgg tgggcgacgg ctatgtcctg
      721 cgccggctgg accggctgat cgtcaagggc aagaccgagc cgatcgtggt cttcgaggtg
      781 ctggggcgcc gcggcgaggt ggtcgaaacc gtgctggcgc gcctggcgga gttcgaacgc
      841 gcccttggcc tgcacgacgc ccgcgacttt gccgcggcga tggcggtttt ccgcaaactg
      901 gcgcccgccg atccgccgtc gcgggtgtat gctgaccgct gtgaagccta tctcgtgacg
      961 ccgccgccgg ccgactggca gggcgagttc gcacttaaga cgaagtgatg ggggacatca
     1021 tggacgacac ctcgcgaatt ggccgccgtg gactgttgac cggcgtcgcc gccggcgcgg
     1081 cgcttggcgc cagtctgggc gcgacgccgg ccctggcgca gttcccgagt ctgcccggca
     1141 tgcccagcct tccgggcggc ggcaatctcg gcgacctggt gggccaggtc ggcggcgtga
     1201 tctccggcat gaatatctcc gaggccgacg agatcgccat gggcgagggc tactacgagc
     1261 gcttcatcga tcagtccggc gggctctaca attcccgcgc cgatcaggag gcgctcaggg
     1321 ccttcgccca ggtggtgatg ggcaccagca agcgcccgac cctgccgtgg cagatcgccc
     1381 tggtcgataa cgagaccgtc aacgcctggg cgctgccggg cggcaagatc ggcgtgcaca
     1441 agggcctgat ccgctatgtc gccggacctg acgaactggc cgcggtgatc agccacgagg
     1501 tcggtcacgc cgaactcagc cacggcg
//
LOCUS       DATAJL010000767         2963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64226,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000767 DATAJL010000000
VERSION     DATAJL010000767.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2963
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64226"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..201)
                     /locus_tag="VHN39_14630"
     tRNA            complement(128..201)
                     /locus_tag="VHN39_14630"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(167..169),aa:Gln,seq:ttg)
     gene            351..427
                     /locus_tag="VHN39_14635"
     tRNA            351..427
                     /locus_tag="VHN39_14635"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:385..387,aa:Pro,seq:cgg)
     gene            541..1284
                     /locus_tag="VHN39_14640"
     CDS             541..1284
                     /locus_tag="VHN39_14640"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEX2817629.1"
                     /translation="MPHNPVDRRAVLGLGLLACAAPLTSSAAQLTGAGMVWQANQSAW
                     PTATDLRASYVYFTADEAAFVEAVCARIVPADATGPSAVEAGVPLFLDRQLAGDYGKG
                     ARWYMQGPFGKSTGTQGYQSQYPPAGLYRAAIKAIGDHLSRNNGAPFHKRLAAEQDAF
                     LKDLSDGKVDLGADVDGKAYFTLLLQNVMEGYFSDPIYGGNRGLSAWKMIGFSGARYD
                     QRPYVLAYGKPYPLPPVGISGRLAWSAKG"
     gene            1288..>2963
                     /locus_tag="VHN39_14645"
     CDS             1288..>2963
                     /locus_tag="VHN39_14645"
                     /inference="COORDINATES: protein motif:HMM:NF012935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEX2817630.1"
                     /translation="MATKLPSVDAVLVGFGWTGAIMAQELTEAGLNVVAIERGDWRDT
                     PTDFSPAYAQDELRYYWRHELFQRLNHDTLTIRNRTSETALPMRQLGSFLLGSGVGGA
                     GVHWNGQVWRFLPSDLKARSHNLDRYGKKAVPDEMTIQDYPVSYDDLEPHYDKFEYLC
                     GVSGKAGNLKGVIQPGGDPFEGPRQREYPNPPLDMPYAPTLFGKAATELGRHPFPHPA
                     ANASRAYTNPLGVQLGPCTYCGFCEKYACGNYSKATAQTTILPVLMRRKTFTLRTNCE
                     VTKINLSADGKTATGVTYLDERGQEVEQPAEMVILSAYILHNVRLLLLSGIGKPYDPA
                     TGEGVVGKNYAYQITSSVNVFFDDKILNPFVGAGALGTMINDFNGDNFDHSGLGFIGG
                     GYVGLMQTGARPIETHPVPTGAPAWGADWKKAIARDYLKTTTVSTHGAVMSHRGNYLD
                     LDPTYKDALGRPLLRMTFDFTDNEHAMSDYLTDRASEIARAMGGREIKANPRKGSWDV
                     VPYQTTHNTGGAIMGDDPKTSFTNKYLQSWDVPNLFVLGATAFPQNAGYNP"
BASE COUNT          538 a         1080 c          910 g          435 t
ORIGIN      
        1 gaggccagat tggcgaaggc caggaaggcg ctcagtcccg ccaccaccag ggccagggcg
       61 atggacgcgg cgatgatacg cttgaagccc aatacgcgac ctcatcgggc ccgtggcggc
      121 gggccgttgg ctggggaact aggactcgaa cctagaatga cggtaccaaa aaccgcagtg
      181 ttaccattac accattcccc agcaggaatg gccgcgaagg gtccccgcgc ggaggcgtcg
      241 agatagcgca ggagaccccg cgatgcaacg tcccgctgac cgcgtgacaa cgcggccgaa
      301 ccccgccttg cggccccctg acccctcctc tataaggcgc cctccaaagt cggagtgtgg
      361 ctcagtctgg tagagcaccg cgttcgggac gcgggggtcg caggttcaaa tcctgccact
      421 ccgaccattt ccctcccgcc catgccgcac cgcgtccgcc gcgtgacgct gtaagactgt
      481 cggcggccgg gaacagcccc ttcgaactag cgttaccgca gctggtcgga gagctgcgcc
      541 ttgccccaca accctgtcga tcggcgcgcg gttctgggcc tgggcctcct ggcctgcgcc
      601 gcgcccctga cgagctcggc cgcgcagttg acgggcgccg gcatggtctg gcaggccaac
      661 cagtcggcgt ggcccaccgc caccgacctt cgcgcgtctt acgtctactt caccgccgac
      721 gaggccgcct tcgtcgaggc cgtctgcgcc aggatcgtgc cggccgacgc cacggggccg
      781 agcgccgtgg aagccggcgt gcccctcttc ctcgaccgcc agctcgccgg tgactatggc
      841 aagggcgcgc gctggtacat gcagggcccg ttcggcaaaa gcaccggcac gcagggctac
      901 cagagccaat acccgcccgc gggcctctac cgcgcggcga tcaaggcgat cggcgaccac
      961 ctctcccgga acaacggcgc gccctttcac aaacgcctcg cggccgaaca ggacgctttc
     1021 ctgaaggacc tctccgacgg caaggtcgac ctcggcgccg acgtggacgg caaggcctac
     1081 ttcaccctgc tgctgcagaa cgtgatggag ggctatttct ccgacccgat ctacggcggc
     1141 aaccgcggcc tttccgcgtg gaagatgatc ggcttctccg gggcccgcta cgaccagcgc
     1201 ccctacgtgc tcgcctacgg caagccctac ccgctgccgc cggtgggcat cagcggccgg
     1261 ctcgcctggt cggcgaaagg ctagcgcatg gccacgaaac tcccctcggt cgacgcggtg
     1321 ctggtgggtt tcggctggac cggcgcgatc atggctcagg agctgaccga ggcggggctg
     1381 aacgtcgtgg ccatcgagcg cggcgactgg cgcgacacgc ccaccgactt ctcgccggcc
     1441 tatgcccagg atgagttgcg ctactattgg cgccatgagc tcttccagcg gctcaaccac
     1501 gacaccctga ccatccgcaa caggacgagc gagacggcgc tgcccatgcg gcaactgggg
     1561 tccttcctgc tgggctcggg cgtcggcggg gccggcgtgc actggaacgg ccaagtctgg
     1621 cggttcctgc cgtcggacct caaggcccgt agccacaacc tcgatcgcta cggcaagaag
     1681 gccgtccccg acgagatgac catccaggac tatccggtca gctatgacga cctggagccg
     1741 cattacgaca agttcgaata cctctgcggc gtctccggca aggccggcaa cctcaagggc
     1801 gtgatccagc cgggcggcga cccgttcgaa gggccccgcc agcgcgaata ccccaacccg
     1861 ccgctcgaca tgccctatgc gccgaccctg ttcggcaagg ccgccaccga gctcggccgc
     1921 catcccttcc cgcacccggc cgccaacgcc tcgcgcgcct acaccaaccc gttgggcgtc
     1981 cagctcggcc cctgcaccta ttgcggcttc tgcgagaagt acgcctgcgg caactattcc
     2041 aaggcgaccg cccagaccac gatcctgccg gtgctgatgc gcaggaagac cttcaccctg
     2101 cggaccaact gcgaggtcac gaagatcaac ctctcggccg acggcaagac cgccaccggc
     2161 gtcacctacc tcgacgagag aggccaggag gtcgagcagc cggcggaaat ggtgatcctg
     2221 tcagcctaca tcctgcacaa cgtccgcctg ttgctcttgt caggtatcgg caagccctac
     2281 gacccggcca ccggcgaggg cgtggtgggc aagaactacg cctaccagat cacttcatcg
     2341 gtgaacgtct tcttcgacga caagatcttg aaccccttcg tgggcgccgg cgcgctcggg
     2401 accatgatca acgacttcaa cggcgacaat ttcgaccatt ccggcctggg cttcatcggc
     2461 ggcggctatg tgggcctgat gcagaccggg gcccggccga tcgagaccca tcccgtcccc
     2521 accggcgcac cggcgtgggg cgcggactgg aagaaagcca tcgcccgcga ctacctgaag
     2581 accaccacgg tctcgaccca cggcgcggtg atgagccatc gcggcaacta cctggacctg
     2641 gaccccactt acaaggacgc gctcggccgc ccgctgctgc ggatgacctt cgacttcacc
     2701 gacaacgagc acgcgatgtc ggactacctc accgaccggg ccagcgagat cgccagggcc
     2761 atgggcggcc gcgagatcaa ggccaacccg cgcaagggct cctgggatgt ggtcccctac
     2821 cagaccaccc acaacaccgg cggggcgatc atgggcgacg acccgaagac cagcttcacc
     2881 aacaaatacc tgcagagctg ggacgtgccg aacctgttcg tgctgggcgc cacggccttt
     2941 ccgcagaatg ccggctacaa ccc
//
LOCUS       DATAJL010000768         3661 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_96699,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000768 DATAJL010000000
VERSION     DATAJL010000768.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3661)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3661)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3661
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_96699"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VHN39_14650"
     CDS             <1..247
                     /locus_tag="VHN39_14650"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520757.1"
                     /note="catalyzes the formation of L-tryptophan from
                     L-serine and 1-(indol-3-yl)glycerol 3-phosphate; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEX2817631.1"
                     /translation="SWLHDVGRATYLTATDQDSLDAFKLCAELEGILPAIESAHALAR
                     LDQVTKDVGKDGVVVLNLSGRGDKDVATVAAHLGMAI"
     gene            244..1077
                     /gene="trpA"
                     /locus_tag="VHN39_14655"
     CDS             244..1077
                     /gene="trpA"
                     /locus_tag="VHN39_14655"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEX2817632.1"
                     /translation="MTTSRIDARFAALKAEGRAAFVAYVMAGDPDAATAAKILAGLPG
                     AGADLIELGFPFSDPMAEGPPIQRSALRALEKGMTLKGTLELVRGFRVGDQTTPVILM
                     GYTNLLVTWGFEAFARDAAEAGVDGLIVVDLPPEESGPLADALDAASVSLIRLATPTT
                     DDARMKVVVRRTSGFVYYVSVAGVTGVKEANAATVAPHAARVRKASGLPVAVGFGIRT
                     PERAAEIARVADAVVVGSALVDEIAEAVEMNEDVTRRVLSKADSLAKAVRSARVGQTT
                     V"
     gene            1082..2008
                     /gene="accD"
                     /locus_tag="VHN39_14660"
     CDS             1082..2008
                     /gene="accD"
                     /locus_tag="VHN39_14660"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HEX2817633.1"
                     /translation="MAMAEQRNDKPGRPAAPEKRTGWLSRIAPGVRNAFSKRETPENL
                     WVKCPDTGEMIYRPDLEAALWVTPSGHHMRIGAAQRLKYTFDEGKFERIASPIVADDP
                     LKFPDVKPYPDRIKAARKATGEQDALAVGYGHILGVPVVVAVQDFAFMGGSLSMAVGE
                     AFIKAAQEAVKREVPFVIFTASGGARMQEGTLSLMQLARTTLALNEVKAAGLPYVVVL
                     TDPTTGGVMASYAMLGDVHLAEPNALIGFAGRRVIEQTIRESLPPGFQRAEFQMERGM
                     VDKVVARGEMREVLASILQTLMMGRSQHLPAA"
     gene            2028..3356
                     /locus_tag="VHN39_14665"
     CDS             2028..3356
                     /locus_tag="VHN39_14665"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007674463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HEX2817634.1"
                     /translation="MTGLDHDPIRASDAVIQRLRANHPVLIDLTTGRVERLLAALGHP
                     ERRLPPVIHVAGTNGKGSTVAYLRAIAEAQGQRVHAITSPHLVRFAERVRIAGQLISD
                     ERLEALTDRVEAANAGEPISFFEITTVLAIEAFAETPADICLVEVGLGGRFDATNVFD
                     APAVSVITPIDYDHLEMLGPELGKIAWEKAGIIKRGRPVVCARQPDEALEAIEREADD
                     RMAPLFLMGRDFDAWEERGRLMVQMPDRLLDLPAPSLFGGYQFENAGLAVAAALTFNH
                     DLSEDDLGRGVSSAVWPARFQRLTKGPLAALAKARGSDLWLDGGHNPHAGRALAEAAS
                     RLVDRDPRPLVLVAGMFARKDSEGYFRPFAEMHPKVFTTTFDSNIAATAGDLAEAARQ
                     AGLSAEPVADVTEAVRKALDGNGPAPHVLICGGLHFAGEVLAMSPETWPT"
     gene            complement(3423..>3661)
                     /locus_tag="VHN39_14670"
     CDS             complement(3423..>3661)
                     /locus_tag="VHN39_14670"
                     /inference="COORDINATES: protein motif:HMM:TIGR04433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UrcA family protein"
                     /protein_id="HEX2817635.1"
                     /translation="LDLNSAPGAHAAVARLTRAAAEACGDQPGVSPELIWMSDSYRLC
                     RSAALATAVSKIHTAAVEVAFAEVRGQTVRLARR"
BASE COUNT          558 a         1320 c         1259 g          524 t
ORIGIN      
        1 cagctggctg cacgacgtgg gccgggcgac ctacctcacc gccaccgacc aggactcgct
       61 cgacgccttc aagctctgcg ccgagctgga gggcatattg ccggccatcg aaagcgccca
      121 tgcgctcgcc cgcctggacc aagtcaccaa ggacgtgggt aaggacggcg tcgtggtgct
      181 caatctctcc ggccgcggcg acaaggacgt ggccactgtc gcggcccacc tggggatggc
      241 gatttgacca cctcgcggat cgacgcccgc ttcgccgcgc tgaaggccga gggccgcgcg
      301 gccttcgtgg cctatgtgat ggccggcgac ccggacgcgg ccaccgcggc gaagattctg
      361 gctggcctgc cgggcgcagg cgccgatctg atcgagctcg gcttcccgtt ctccgacccc
      421 atggccgagg gcccgccgat ccagcgctcg gcgctcaggg cgctcgaaaa gggcatgacg
      481 ctcaagggca cgctggagct ggtccgcggc ttccgcgttg gcgaccagac cacgccggtc
      541 atcctgatgg gctacacgaa cctgctggtg acctggggtt tcgaggcctt cgcccgcgac
      601 gcggccgagg cgggcgtgga tggcctgatc gtcgtcgacc ttccgccgga ggagtccggc
      661 ccgctggccg acgccctgga cgcggccagc gtctcgttga tccggctcgc cacccccacc
      721 accgacgacg cccggatgaa ggtcgtggtc cgccgcacct cgggcttcgt ctactatgtc
      781 tcggtggcgg gcgtgaccgg ggtcaaggaa gccaacgccg ccacggtcgc gccccacgcc
      841 gcgcgcgtgc gcaaggcgtc cggcctgccg gtggcggtcg gtttcggcat tcgtaccccc
      901 gaacgagccg ccgagatcgc ccgcgtcgcc gacgccgttg tggtgggctc cgcgcttgtg
      961 gacgaaatcg ccgaagcggt ggagatgaac gaagacgtga cccggcgggt tctttccaaa
     1021 gcagattcct tggctaaggc tgtgcgctcc gcgcgagtcg gccaaacgac ggtctagaac
     1081 catggcgatg gctgaacaga gaaacgacaa acccgggcgg cccgccgccc ccgaaaagcg
     1141 aacaggctgg ctgtcgcgta tcgcgcccgg cgtacgcaac gcgttctcca agcgcgagac
     1201 gcctgagaac ctctgggtaa aatgccccga caccggggag atgatctatc gccccgacct
     1261 ggaggccgcg ctctgggtga cgccctccgg ccaccacatg cggatcgggg ccgcccagcg
     1321 gctcaaatac accttcgacg agggcaagtt cgagcggatc gcctcgccca tcgtcgccga
     1381 cgaccccctg aagttcccgg acgtgaagcc ctatccggac cgcatcaagg ccgcccgcaa
     1441 ggcgaccggc gagcaggatg cgctggcggt gggctacggc cacatcctcg gcgtgccggt
     1501 cgtggtcgcg gtgcaggact tcgccttcat gggcgggtcg ctctcgatgg cggtgggcga
     1561 ggccttcatc aaggccgccc aggaggccgt gaaacgcgag gtccccttcg tgatcttcac
     1621 cgccagcggc ggcgcgcgca tgcaggaggg cacgctcagc ctgatgcagc tcgcccggac
     1681 gacgctggcg ctcaacgagg tcaaggccgc gggcctgccc tacgtcgttg tcctgaccga
     1741 tcccaccaca ggcggcgtca tggcctccta cgccatgctg ggcgacgtgc acttggccga
     1801 gccgaatgcg ctgattgggt ttgccggccg ccgggtgatc gaacagacca tccgcgagag
     1861 cctgccgccg ggcttccagc gcgccgagtt ccagatggaa cgcggcatgg tcgacaaggt
     1921 ggtcgcccgc ggcgagatgc gcgaggtcct ggcctcgatc ctgcagacct tgatgatggg
     1981 gcggtcgcaa caccttcccg ccgcctgacg caacgccccc caatgccatg acgggcctcg
     2041 accacgaccc catccgcgcc tccgacgcgg tgatccagcg cctgcgcgcc aaccacccgg
     2101 tgctgatcga cctgaccacc ggccgcgtcg agcgcctgct ggctgcgctg ggccatcccg
     2161 aacgccgctt gccgccggtg atccacgtgg ccggcaccaa cggcaaaggc tcgacggtgg
     2221 cttacctgcg cgccatcgcc gaagcgcaag ggcaaagggt ccacgccatc acctcgccgc
     2281 acctggtgcg cttcgccgaa cgcgtgcgca tcgccggcca gctgatcagc gacgagaggc
     2341 tggaagcact caccgaccgg gtggaggccg ccaacgccgg cgagccgatc agcttcttcg
     2401 aaatcaccac ggtgctggct atcgaggctt tcgccgagac gccggccgac atctgcctgg
     2461 tggaggtggg cctgggcggt cggttcgacg ccaccaacgt cttcgacgcc cccgccgtca
     2521 gcgtgatcac ccccatcgac tacgaccacc tggagatgct gggccccgag ctcgggaaga
     2581 tcgcctggga aaaggccggg atcatcaagc gcggccgccc tgtggtctgc gcccgccagc
     2641 cggacgaggc gctggaggcc atcgagcggg aggccgacga ccgcatggcg ccgctgttcc
     2701 tgatgggccg cgacttcgac gcctgggagg agcgcggccg gctgatggtg cagatgcccg
     2761 accggctgct ggacctgccg gcgcccagcc tgttcggcgg ctaccagttc gagaacgccg
     2821 gcctggcggt ggccgcggcg ctcacgttca accacgacct cagcgaggac gacctgggcc
     2881 gaggggtgtc ctccgccgtc tggccggcgc ggttccagcg cctgaccaag ggcccgctgg
     2941 cggcgttggc caaggcccgc ggctcggacc tctggctcga cggcggccac aacccccacg
     3001 ccggccgcgc gctggcggag gccgcctcgc gcctggtgga ccgcgatccc aggccgctgg
     3061 tccttgtggc ggggatgttt gcgaggaagg actccgaggg ctatttccgc cccttcgccg
     3121 agatgcaccc gaaggtcttc accaccacct tcgactcgaa catcgccgcc accgccggcg
     3181 atctcgccga ggccgcgcgc caggcggggc tttccgccga gccggtggcc gatgtgaccg
     3241 aggcggtgcg caaggcgctg gacgggaacg gcccggctcc gcacgtcctg atctgcggcg
     3301 gcctgcactt cgccggcgag gtcctggcca tgagcccgga gacatggccg acctgagcca
     3361 tcacccgctg gacggcccaa gacggcggga gtgagcgggc gcggcgtccg cgcccgctca
     3421 acctatcgcc tcgccagccg aaccgtctgg ccgcggacct ccgcgaaagc cacctcgacg
     3481 gctgcggtgt ggatcttgga caccgcggtc gccagggccg cggaccggca cagccgatag
     3541 ctgtccgaca tccagatcag ctccgggcta acgccgggct ggtctccgca ggcttccgct
     3601 gcggcgcggg tcaggcgcgc gacggcggcg tgggccccgg gcgcgctgtt gaggtcgagg
     3661 t
//
LOCUS       DATAJL010000769         2785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_70693,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000769 DATAJL010000000
VERSION     DATAJL010000769.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70693"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VHN39_14675"
     CDS             <1..276
                     /locus_tag="VHN39_14675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817636.1"
                     /translation="GGQRVVVGLAHPAVLGGEGGLAADQPVGLGRGRAAGDRRRSFGD
                     HDRGQALWHGARDRATTGPQLAQLYARRIADLEAAARNPRRPHPIGG"
     gene            complement(282..1052)
                     /locus_tag="VHN39_14680"
     CDS             complement(282..1052)
                     /locus_tag="VHN39_14680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817637.1"
                     /translation="MTADKPTATYGGYVFGLGIMALALVALALGDFDPGQPVPKAFPE
                     RAVLAYAADAFLLVAGAAVLWRRTVAWGAGALTAYYGLIVVLLMDGRSVLRHAREFLA
                     YTNTAEQMAIAAAALIVFAAHARIDPVLAARLTRAGQIAFGVCALLFGAAHFAFMNMT
                     APLVPKWLPPGQLFWGYATGVFHILAGLAILTGVQARLAAILLTVMFAAFTPLVHIPL
                     FLADPANHGEWAENALNLVLIGAAWVVADSLARARRQG"
     gene            1413..1826
                     /locus_tag="VHN39_14685"
     CDS             1413..1826
                     /locus_tag="VHN39_14685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817638.1"
                     /translation="MRKSKTARIAAIATGLMLAIAAPAVAQTHGGHSGGGGGHVSGGG
                     GHFSGGGRGSSGGGRGFAGGGFRGGRDFRGGGAFLGGLALGYALDPYPYYGGPYYGGG
                     YGYEDDYGPGQCLTEQRVWDPRYGRYMVREVPYPC"
     gene            complement(2269..>2785)
                     /locus_tag="VHN39_14690"
     CDS             complement(2269..>2785)
                     /locus_tag="VHN39_14690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817639.1"
                     /translation="PADRCLIGGFGSSSPPMMAPAVSAVKQIVQTRTEVAILSEMNHD
                     VRIVRLGGHHPPPNVRLWMGDSIGHWEGATLVVETTNFHSQEQMHGILLKSPDARVTE
                     RFTRVAKDQILYEFEVDDPAVYTTPWRAQMPLNADTGPIYEFACHEGNYGLTDILAAA
                     RRADAQAGAGR"
BASE COUNT          421 a          923 c         1025 g          416 t
ORIGIN      
        1 ggcggccagc gcgtcgtcgt aggcctcgcg catccggcgg tcctgggcgg cgagggcggg
       61 ttggctgcag accagccggt cggcctcggc cgcgggcgcg cggcaggcga ccgccggcgg
      121 tcgtttggcg accacgaccg cggccaggcc ctgtggcacg gcgctcggga ccgggcgacc
      181 accgggccgc agctcgccca gctctatgcc cggcgcatcg ccgacctgga ggcggcggcg
      241 cgcaatcccc ggcgtccgca cccgatcggg ggctgagcgg tctaaccttg gcgcctcgcc
      301 cgcgccaggg agtccgccac gacccaggcg gcgccgatca agacgagatt cagcgcgttc
      361 tcggcccatt ccccgtggtt ggcgggatcg gccaggaaca gcgggatgtg caccaggggc
      421 gtgaaggccg cgaacatgac ggtgagcagg atggcggcca ggcgcgcctg aacccccgtc
      481 aggatcgcca ggcccgccaa gatgtggaag accccggtgg cgtagcccca gaagagctgg
      541 ccgggcggca gccatttggg gaccagcggg gcggtcatgt tcataaaggc gaagtgggcc
      601 gcgccgaaca gcagcgcgca gacgccgaag gcgatctggc ccgcgcgggt caggcgcgcg
      661 gccaggaccg gatcgatccg ggcgtgggcg gcgaagacga tcagggcggc cgccgcgatc
      721 gccatctgct cggcggtgtt ggtgtaggcg aggaactcgc gggcgtggcg cagcaccgag
      781 cggccgtcca tcaggaggac gacgatgagc ccatagtagg cggtgagcgc gcccgcgccc
      841 caggccacgg tccgccgcca caggacggcc gcgcccgcca cgagcaggaa ggcgtcggcg
      901 gcataggcca gcacggcgcg ctcggggaag gccttgggca cgggctggcc ggggtcgaag
      961 tcccccaggg ccagggcgac cagggcgagc gccatgatcc ccaggccaaa gacgtagccg
     1021 ccgtaggtcg ccgtgggttt gtccgcggtc atgacgtttc cccctgccgt ctgcgcgctt
     1081 gagcttgagc gtaacctacc gcgctcgcgg aggcttgggc caaagacggc gaaaggggcc
     1141 aatgcccgca ccgcctcgtg cgagcttcag tattgaatgc cgcagtcgga gcacccgtaa
     1201 ggcggggttt ggcgtattca cgggtccggg ccgcgcaatg cgccaaggtt ccggtggttc
     1261 cgcgtctgtc cttaaattct tttttacttt ccggaccccg aatctatacg tcctattcag
     1321 cccacattca ggtgacatct cgtagagtcc gtatgagcgc gaaactgcgc ccctcgccac
     1381 cttggctgtg ggatattcgt acggaggttt ccatgaggaa atcaaaaact gcccggatcg
     1441 cggcgatcgc gacgggcctg atgctggcga tcgccgcccc ggcggtcgcc cagacccatg
     1501 gcggccacag cggtggcggc ggcggccatg tcagcggtgg cggcggtcac ttcagtggcg
     1561 gcgggcgtgg ctccagcggc ggcgggcgtg gtttcgcggg cggcgggttc cgaggcggcc
     1621 gcgacttccg cggcggcggc gccttcctgg gcggcctggc gctcggctat gccctcgacc
     1681 cctaccccta ctacggcggc ccctactacg gcggcggcta tggctatgag gacgactatg
     1741 gccccggcca atgcctgacc gagcagaggg tgtgggatcc ccgctacggg cgctacatgg
     1801 tccgcgaggt cccgtacccc tgctagcgac gccctgtccg ccttccctcc tgcgcttctg
     1861 gcaggcgcgc caaagttggg cccgtcgcag tagaggtcca cccttcccta taggcgacgc
     1921 aagtggccgc gcgcaccgat gctgacttga gaaagaccgc cgggcagggc cttgggggcc
     1981 gggtccaaac cggacaggat aaggtcggcg ccgccagggg ccaaagattg gatgttcacg
     2041 aattgtttcg cggcgcataa gcttgtgcgt aacgccccga gggctggtcg aggaggtcgc
     2101 gccgacccat gacgccttcg tcgccgacct gggcagcgcg atcccggcgg acaaggtctg
     2161 ggaagcagtc caggcgagac acgcggagcg cacgaaggcc ggccggtgat ccgacggggt
     2221 caccgtaact ccgcctctcc ccctcgtttc gcggggagag gcggtccgct agcgccccgc
     2281 ccccgcctgg gcgtcggcgc ggcgggcggc ggcgaggatg tcggtgaggc cgtagttgcc
     2341 ttcgtggcag gcgaattcgt agatcgggcc ggtgtcggcg ttgagcggca tctgggcgcg
     2401 ccagggcgtg gtgtagacgg ccgggtcgtc gacctcgaac tcgtagagga tctggtcctt
     2461 cgccacgcgg gtgaagcgct cggtgacacg cgcgtccggc gacttcagca ggatgccgtg
     2521 catctgttcc tggctgtgga aattggtggt ctccaccacc agggtcgcgc cctcccaatg
     2581 gccgatggaa tcgcccatcc acaggcgcac gttgggcggc gggtgatggc ctccgagccg
     2641 cacgatccgc acgtcgtggt tcatctccga gaggatggcg acctccgtac gggtctggac
     2701 gatctgtttc accgccgaga cggccggcgc catcatcggc gggctggagg agccgaagcc
     2761 gccgatcagg catcggtcgg cgggc
//
LOCUS       DATAJL010000770         1608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_122050,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000770 DATAJL010000000
VERSION     DATAJL010000770.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1608
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122050"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..609)
                     /locus_tag="VHN39_14695"
     CDS             complement(<1..609)
                     /locus_tag="VHN39_14695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate-binding protein"
                     /protein_id="HEX2817640.1"
                     /translation="MSDRPSGAAPPRLVAVLGPTNTGKTHLAVERMLGHASGMIGLPL
                     RLLAREIYDRIVKLRGVRSVALITGEEKIVPPRPHYFVCTVEAMPLSREVEFLAVDEI
                     QLCADPERGHVFTHRLLHARGTAETMLLGAGTMAPLVRRLLPHAEIVTRERFSALTYA
                     GPKKLTRLPRRSAVVAFSADQVYAIAELIRRQRGGAAVVMGSL"
     gene            complement(651..1061)
                     /gene="cdd"
                     /locus_tag="VHN39_14700"
     CDS             complement(651..1061)
                     /gene="cdd"
                     /locus_tag="VHN39_14700"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: protein motif:HMM:NF004064.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004126 - cytidine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0008655 - pyrimidine-containing compound
                     salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEX2817641.1"
                     /translation="MTDTSAIAAELRRLLPHAHAPYSGVHVAAALESADGRVTYGVNV
                     ENAAYPLGQCAEASAIGAAVTAGPTTLTRVYVTASLPGLVWPCGGCRQKIFELAADGC
                     EVVSLGSDGEVGRQTIEQLLPLGFRLEPAQVRRA"
     gene            complement(1102..>1608)
                     /locus_tag="VHN39_14705"
     CDS             complement(1102..>1608)
                     /locus_tag="VHN39_14705"
                     /inference="COORDINATES: protein motif:HMM:NF013232.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEX2817642.1"
                     /translation="ELPVGAVLLADAMTIHDYGVMAGGRLTSTASGLVPLGAPELEAL
                     SPVPPGVAATLERLAEVLRTQIEAPVRLGGIVTADYFLNCAETRQALHARFNAQAIDM
                     ESGAVNQVAEAWGVPLYVIRTLSDLAGEESHLTYPQMAQLAAHNSALCVPDLLALLAS
                     VDASPPPP"
BASE COUNT          253 a          555 c          591 g          209 t
ORIGIN      
        1 caaggagccc atgaccacgg cggcgccgcc gcgctggcgg cggatcagct cggcgatggc
       61 gtagacctgg tcggcgctga aggccacgac cgccgagcgg cggggcaggc gggtgagctt
      121 cttcggcccg gcgtaggtca acgccgagaa ccgctcgcgg gtgacgatct cggcgtgggg
      181 caagaggcgc cgcaccaggg gcgccatcgt ccccgcgccc agcagcatgg tctccgccgt
      241 cccacgggca tgcagcaggc ggtgggtgaa cacgtggcca cgctcggggt cggcgcagag
      301 ctggatctcg tccaccgcca ggaactcgac ctcgcgcgac aacggcatgg cctcgacggt
      361 gcagacaaaa tagtgcggcc ggggcgggac gatcttctcc tcgccggtga tcagggccac
      421 ggatcgcacg ccgcgcagct tgacgatgcg gtcgtagatc tcgcgggcca ggagccgcag
      481 cggcaggccg atcatgcccg aggcgtgacc cagcatccgc tcgacggcca gatgcgtctt
      541 gccggtgttg gtgggaccca gcaccgccac cagtctcggc ggcgccgcac ctgatggccg
      601 gtcgctcatg atctgaattt ggggtcgcgg cgagagtcgg gcaagcccga ctaggcgcgg
      661 cgaacttgcg caggctccag gcggaagccc aggggcagca actgctcgat tgtctggcgc
      721 cccacctcgc catctgaccc caggctcacc acttcgcagc cgtccgcggc cagttcgaag
      781 atcttctgcc ggcagccgcc gcagggccag accaggcccg gcagggaggc ggtcacatag
      841 acccgcgtga gcgtcgtcgg ccccgcggtc accgccgccc cgatggcgct ggcctcggcg
      901 cactgaccca gcggataggc ggcgttctcg acgttgaccc cgtaggtgac gcggccatcg
      961 gcgctctcca gggcggcggc cacatgcacg ccggagtagg gcgcgtgcgc gtgcggcaac
     1021 agccgtcgca gttcggcggc gatcgcggag gtgtcggtca tgggggaggc gtcccgaagc
     1081 aaactcaagg gacggatgac tctagggtgg cggaggggac gcgtccaccg aagcgagaag
     1141 cgccagcaga tccgggacgc agagggcgga gttgtgggcc gccagctggg ccatctgcgg
     1201 ataggtgagg tggctctcct cgccggccag gtcggagagc gtgcggatca cgtagagcgg
     1261 gacgccccag gcttccgcca cctggttcac ggcgccggat tccatgtcga tggcctgggc
     1321 gttgaagcgg gcgtggagcg cctgccgcgt ctccgcgcag ttcaggaaat agtcggcggt
     1381 gacgatgccg cccagccgca ccggcgcctc gatctgggtc cgcaggacct cggccaggcg
     1441 ctccagggtg gcggccaccc cggggggaac cggcgagagc gcctcaagct ccggcgcgcc
     1501 cagcggaacc aggccggacg ccgtcgaggt cagccgcccg ccggccatca ccccatagtc
     1561 gtggatcgtc atcgcgtcgg ccagcagcac cgcccccacc ggcagctc
//
LOCUS       DATAJL010000771         3984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_108909,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000771 DATAJL010000000
VERSION     DATAJL010000771.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3984
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108909"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..996
                     /locus_tag="VHN39_14710"
     CDS             <1..996
                     /locus_tag="VHN39_14710"
                     /inference="COORDINATES: protein motif:HMM:NF024829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HEX2817643.1"
                     /translation="EQVLALDGSEVAAGAPLARLANPQLKLAVVSKEAEIAGRMGDVS
                     GQELALQKAQADRERELAQATYDMQKARRELDRRKILHDSGFESDVVLRTAVDDAAYA
                     EARVASLQAGGVRESAIGADQHARIRALSGRLGDNLAQVQASLDALIVKAPVKGRLTN
                     FVLQPGQPLKAGETVGQVDSEGAYKLTAELDEFYLGRVAVGQAATADLDGRAIPLKVA
                     RVLPQVVQGRFHVEFAFQGAPPALRRGQTLDVKLILGDTQPAVTLPNEAWLEGSGGAY
                     AFVVSGDGRRADRRAITVRRRNPQQVEVGSGLRPGERVVVSSYAGLAPYSHLILR"
     gene            1005..1685
                     /locus_tag="VHN39_14715"
     CDS             1005..1685
                     /locus_tag="VHN39_14715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018084144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2817644.1"
                     /translation="MIVLADINRLFRSDEVETTALRSIDLSIEEGEFVAIMGPSGCGK
                     STLLNTLGMIDKPTSGRYLFRGQEVTDLDEAHLARMRRDNLGFVFQSFNLIDELTIAE
                     NVELGLVYRRWAGKDRRARVEAALDRVGVAHRSRHYPHQLSGGQQQRAAIARAIVGQP
                     SLILADEPTGNLDSENGEQVMEILKSLNREGATIVMVTHSPRHADIAQRRIDMLDGRV
                     VISASRAA"
     gene            1691..>3984
                     /locus_tag="VHN39_14720"
     CDS             1691..>3984
                     /locus_tag="VHN39_14720"
                     /inference="COORDINATES: protein motif:HMM:NF024116.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2817645.1"
                     /translation="MFAHWILTLYRSVVRHRLYAAINVLGLALGVAVFLVLMLVVRFQ
                     TSFEAWIPHADQIYLVRSNDRIVGGWRSDTMGALLDELRGDYPQIMGTRLGGGPATVR
                     QGATITPEQLTWVDPSFFKVFDLPLVAGDKARLLQSPDDLVMTQSKARQYFGAANPIG
                     QRLTLSLDKKVQTYRVVGVIKDLPPTTDFNFDFLIRLQEPTPQENPRWGATTYLRFAT
                     PGEAKALSDGFESFLDRHAGPLEVHTPPLKDIVLRLTPLLQMHLIVPPAEAIVAAIAA
                     VAVLTLLLAAVNYVNLATARASMRAKEVALRKVMGATRPGLIAQFVGESVVVALCGAL
                     IGLAICELVLPLFSAAIGVTLKLDYFGDPWIAGMMAFVVLVVGVGAGVYPAFVLSRFQ
                     AASVLASARSPGGGRAGSRLREALVILQFAIAIAFTIGMAVMVSQAAYLHRADLGFRR
                     QGLIQVDSFPHQELTAEQRASLLTAWRAEPGVVAAAQADSDPGYNWRHFTRFKRPGAP
                     DNGPLFNFDSIGPNFLQAYGARVLAGRLPDPSRAADFSASPDDAASNVNIVLNARAAQ
                     VLGFASPRDAIGLSLEGMNKRFTIIGVVSDMRFTSPHEKVAPIVYWSFSGTINGAEAA
                     VRYAGVDTDALMARMAADWRRIVPTEPFLAKTVVAELEPYYRTDEQVSRMLTLAAVLA
                     VLIGCIGLYGLASFNTAQRVREIGIRKTLGASTMDILRLLMGQFLRPVVLANLAAWPL
                     AYVALRAYLVGFDQRVALTPAYFLT"
BASE COUNT          586 a         1424 c         1348 g          626 t
ORIGIN      
        1 gagcaggtgc tggccctgga cggctcggaa gtcgcggccg gcgcgccgct ggccaggctc
       61 gccaatccgc agctcaagct ggcggtggtc tccaaggaag ccgagatcgc cggccggatg
      121 ggcgacgtca gcggccagga gctggccctg cagaaggctc aggccgaccg cgagcgcgaa
      181 ctcgcccagg cgacctacga catgcagaag gcgcgccgcg aactcgaccg gcgcaagatc
      241 ctgcacgaca gcggcttcga gtccgacgtg gtgctgagga ccgccgtcga cgatgcggcc
      301 tacgccgagg cccgcgtcgc ttcgctgcag gccggcgggg tgcgggagag cgccatcggc
      361 gccgaccagc acgcccgcat ccgcgcgctt tccggccgcc tgggcgacaa cctggcccag
      421 gtgcaggcca gcctcgacgc cctcatcgtc aaggccccgg tgaagggccg cctgaccaac
      481 ttcgtgctgc agccgggcca gccgctgaag gccggcgaga ccgtgggcca ggtggattcc
      541 gagggcgcct acaagctgac cgctgagctc gacgagttct acctgggccg cgtggcggtc
      601 gggcaggcgg cgaccgccga cctcgacggc cgcgcgatcc ccctgaaggt cgcccgcgtc
      661 ctgccgcagg tggtccaggg ccgcttccac gttgagttcg ccttccaggg tgcgccgccg
      721 gccctgcgcc ggggccagac cctcgacgtg aagttgatcc tcggcgacac ccagcccgcc
      781 gtgaccctgc ccaacgaggc ctggctggag ggctcgggcg gcgcctacgc cttcgtggtc
      841 agcggcgacg ggcggcgcgc cgaccgccgc gccatcaccg tacgccgccg caatccgcag
      901 caggtggaag tgggctcggg cctgcgcccc ggcgagcggg tcgtggtctc ttcctatgcc
      961 gggctcgcgc cctactcaca cctcatcctc cgctgagaac cgccatgatc gtgctcgccg
     1021 acatcaaccg cctgttccgc tccgacgagg tcgagaccac ggcgctcagg tccatcgacc
     1081 tttccatcga ggagggggag ttcgtggcga tcatgggccc ctcgggctgc ggcaagtcca
     1141 ccctgctgaa cacgctcggt atgatcgata agcccaccag cggtcgctac ctgttccgcg
     1201 gccaggaagt caccgacctc gacgaggcgc acttggcgcg catgcggcgc gacaacctgg
     1261 gcttcgtgtt ccagagcttc aacctgatcg acgaactgac catcgccgag aacgtcgagc
     1321 tgggcctcgt ctaccgccgc tgggccggca aggaccgccg cgcccgcgtt gaggcggcgc
     1381 tggaccgtgt cggcgtcgcc caccgttcgc ggcactatcc gcaccagctc tccggcggcc
     1441 agcagcagcg cgccgccatc gcccgcgcga tcgtcggcca gccgtcgctg atcctcgccg
     1501 acgagcccac cggcaacctc gacagcgaga acggcgagca ggtgatggaa atcctgaaga
     1561 gcctgaaccg cgaaggcgcg accatcgtca tggtcaccca ctcgccgcgc catgcggaca
     1621 tcgcgcagcg gcgcatcgat atgctggacg gccgcgtcgt gatctcggcc agccgcgccg
     1681 cctgacaagc atgttcgccc actggatcct gacgctctac cgctcggtgg tccgccaccg
     1741 gctctatgcg gcgatcaacg tcctgggcct ggcgctgggc gtggcggtgt tcctggtgct
     1801 gatgctggtg gtgcggttcc agaccagctt cgaggcctgg atcccgcacg cggaccaaat
     1861 ctacctggtc cgctccaacg accggatcgt ggggggctgg cgttccgata cgatgggcgc
     1921 gctgctggac gagcttcgcg gcgactatcc gcagatcatg gggacccgcc taggcggtgg
     1981 tccggccacc gtccggcaag gcgccacgat cacgccggag cagctgacgt gggtggaccc
     2041 gagcttcttc aaggtcttcg acctgccgct agtcgccggc gacaaggccc ggttgctaca
     2101 atcgcccgat gacctggtga tgacgcaaag caaggcccgc caatacttcg gcgccgccaa
     2161 tcccatcggc cagcggttga cgctcagctt ggacaaaaag gtgcagacct accgcgtcgt
     2221 gggggtgatc aaggacctcc cgccgacgac agacttcaac ttcgacttcc tgattcgcct
     2281 gcaggagccg acgccgcagg aaaatccccg atggggcgcc acaacctatc tgcggttcgc
     2341 gacgccgggc gaggccaagg cgctgagcga cggcttcgag agcttcctcg atcggcacgc
     2401 cgggcccttg gaggtccaca cccccccgct caaggacatc gtcctgcgcc tgacgccgct
     2461 gctccagatg cacctgatcg tcccgcccgc cgaggcgatc gttgcggcca tcgcggcggt
     2521 ggcggtcctg accctgctgc tggcggcggt gaactatgtg aacctcgcga cggcgcgggc
     2581 atccatgcgg gccaaggagg tggcgctgcg caaggtcatg ggcgcgacgc ggccagggct
     2641 gatcgcacag ttcgtgggcg agtcggtggt ggtggccctc tgcggcgccc tgatcgggtt
     2701 ggccatctgc gagctggtcc tgccgctgtt cagcgcggcc atcggcgtca ccctgaagct
     2761 cgactacttc ggcgacccct ggatcgccgg gatgatggcc ttcgtggtcc tggtggtggg
     2821 cgtgggcgcg ggggtctatc cggccttcgt gctgtcccgc ttccaggcgg ccagcgtgct
     2881 cgcttccgcg cgctcgcccg gaggcgggcg ggcgggctcg cggctgcgcg aggccctggt
     2941 gatcctgcaa ttcgccatcg ccatcgcctt caccatcggc atggcggtga tggtcagtca
     3001 ggcggcctat ctgcatcgcg ccgacctggg cttccggcgg caaggcctga tccaggtgga
     3061 ctcctttcca caccaggagc tcaccgccga acagcgcgcc agcctgctga ccgcctggcg
     3121 cgcggagccc ggcgtggtcg ccgcggcgca ggctgacagc gaccccggct ataactggcg
     3181 ccacttcacg cggttcaagc gtccgggcgc gcccgataac gggccgctgt tcaatttcga
     3241 ctcgatcggg ccgaacttcc tgcaggccta tggcgcgcgg gtgctggccg ggcggttgcc
     3301 cgatcccagc cgcgccgccg acttctccgc ttcgccggac gacgcggcca gcaacgtcaa
     3361 catcgtcctc aacgcccgcg ccgcgcaggt gctggggttc gcaagcccgc gtgacgccat
     3421 cggcctgagc ctggagggga tgaacaagcg gttcaccatc atcggggtgg tcagcgacat
     3481 gcggttcacc tcgccccacg agaaggtcgc acccatcgtc tattggtcgt tctccgggac
     3541 catcaacggc gccgaggcgg cggtccgtta cgccggggtc gacaccgacg ccctgatggc
     3601 gcgcatggcg gccgactggc ggcggatcgt gcccaccgag ccgttcctgg ccaagaccgt
     3661 ggtggccgag ctggagccgt actaccggac cgacgagcag gtcagccgca tgctgacgct
     3721 ggccgccgtg ctggcggtgc tcatcggctg catcgggctc tacggcctgg cgtcgttcaa
     3781 caccgcccag cgggtccgcg agatcggcat ccgtaagacc ctgggcgcct cgacgatgga
     3841 catcctgcgg ttgcttatgg gccagttcct gcggccggtg gtgctggcca atctggcggc
     3901 ttggcccttg gcctacgtcg cccttcgcgc ctatctggtc ggcttcgacc agcgggtcgc
     3961 gctcaccccg gcctacttcc tgac
//
LOCUS       DATAJL010000772         2597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64273,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000772 DATAJL010000000
VERSION     DATAJL010000772.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64273"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..477
                     /locus_tag="VHN39_14725"
     CDS             <1..477
                     /locus_tag="VHN39_14725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-formylglutamate amidohydrolase"
                     /protein_id="HEX2817646.1"
                     /translation="MFSEARGRIEGAHRPYHAALERLIAEAHRAHGFAILIDWHSMPA
                     AAARAGGRDRPCDFVLGDRFGAACAGVLTARVERELEAMGYRVARNTPYAGGYTTEHY
                     GRPARRTHALQIEINRGLYLDEATLTPTAGFERLKTDLERLTRSLAAADWASLRAG"
     gene            861..>2597
                     /gene="typA"
                     /locus_tag="VHN39_14730"
     CDS             861..>2597
                     /gene="typA"
                     /locus_tag="VHN39_14730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEX2817647.1"
                     /translation="MSLRNIAIIAHVDHGKTTLVDQLLAQSGIFRANEAHAERAMDSN
                     DQERERGITILAKCTSVLWHGEAGDTRINIIDTPGHADFGGEVERILGMVDGCVLLVD
                     AEEGVMPQTKFVLGKALKMGLCPIVCLNKVDRAHADPDRVLNDAFDLFAAMGATDEQL
                     DFPHIYASGKQGWATLDMAKPNDTLAPLFDMIVSHVPEPKAIAQKDGPFQILSVLIEN
                     DPFLGRLLTGRIESGKATPGLAIHALGIDGKEIERGRITKVLAFRGLKRQPVEDAEAG
                     DIVAIAGLSKATVADTLCAMDVTDALPAQPIDPPTISMTVSVNDSPLAGREGDKVQSR
                     VIAARLLKEAESNVAIRVSETPDRDAYEVAGRGELQLGVLIESMRREGFELSISRPRV
                     VFRADPETGERMEPIEDVMIDVDDEFSGIVIEKLSARKAELKDMGPSGAGKTRLSLMS
                     PSRSLIGYQGEFLTDTRGSGVLNRVFSHYEAYKGPIDAGRKGVLVSNSEGETAAFALW
                     NLEDRGTMFVGGGEKTYQGMIIGENSRADDLDVNPMKAKQLTNIRSAGKDEAVRLIPP
                     RRPTLEQAIAYIE"
BASE COUNT          472 a          925 c          833 g          367 t
ORIGIN      
        1 atgttctccg aggcccgcgg ccgcatcgag ggcgcgcacc gcccctatca cgccgcgctt
       61 gagcggctga tcgccgaggc gcaccgggcg cacggatttg cgatcctgat cgactggcat
      121 tccatgcccg ccgccgcggc cagggccggc gggcgcgacc ggccttgcga cttcgtgctg
      181 ggcgaccggt tcggagcggc ctgcgcgggc gtgctcaccg cgcgcgtcga gcgcgagctg
      241 gaggccatgg gctaccgggt ggcgcgcaac accccctacg ccggcggcta caccaccgag
      301 cactacggcc gcccggcccg gcgcacccat gccctgcaga tcgagatcaa tcgcggcctc
      361 tacctcgacg aggcgacgct gacgccgaca gccggtttcg agcggctgaa gaccgacctg
      421 gagcggctca cccggtcgct cgccgccgcg gactgggcgt cgctgcgggc ggggtgagcc
      481 gccacccttg agggggtctg gcctggccat aggccaaaaa aaagcggccc ccgaaggagc
      541 cgcagttcat agggaggaaa cgcccaggaa gggcagaggc ggcaaggccg cctcacaaat
      601 ccaatgtacg gtgcagtgca caacagcgca agcggttgcg acaaaaaacc tgcattttca
      661 tgatggtgcc tatcaaaaga caaggtattt ccgggtcttg cgcggaccgt cgcgggtcat
      721 atctaggttg cattgcacaa cagcttggcc atggcgcggc gtccgcaggg tcgcagaggg
      781 ccagttcaag ctggcggtta ggccgtctct cccctacaag cgcgccttcc tcgctccccg
      841 agaccccctt taagaatccc atgtcgctcc gcaacatcgc catcatcgcc cacgtcgacc
      901 acggcaagac cacgctcgtc gaccagctgc tcgcccagtc gggcatcttc cgcgccaacg
      961 aggctcacgc tgagagggcg atggattcca acgaccagga gcgcgagcgc gggatcacta
     1021 tcctggccaa gtgcaccagc gtgctctggc atggcgaggc tggcgacacc cggatcaaca
     1081 tcatcgacac ccctggccac gccgacttcg gcggcgaggt ggaacggatc ctgggcatgg
     1141 tggacggctg cgtcctgctg gtcgacgccg aggaaggcgt catgccgcag accaagttcg
     1201 tgctcggcaa ggcgctgaag atgggccttt gcccgatcgt ctgcctgaac aaggtcgacc
     1261 gcgcccacgc cgacccggac cgggtgctga acgacgcctt cgacctcttc gccgccatgg
     1321 gcgcgaccga cgagcagctc gacttcccgc acatctacgc ctcgggcaag cagggctggg
     1381 cgacgctgga catggccaag cccaacgaca ccctggcccc gctgttcgac atgatcgtca
     1441 gccacgtgcc ggagcccaag gccatcgccc agaaggacgg ccccttccag atcctctccg
     1501 tcctgatcga gaacgacccg ttcctgggcc gcctgctcac cggacgcatc gaaagcggca
     1561 aggcgacgcc gggcctggcc atccatgccc tcggcatcga cggcaaggaa atcgagcgcg
     1621 gccggatcac caaggtcctg gccttccggg gcctgaagcg ccagccggtc gaggacgccg
     1681 aagccggcga catcgtggcc atcgcgggcc tctccaaggc gaccgtggcc gacacgctgt
     1741 gcgccatgga cgtcaccgac gccctgccag cccagccgat cgatccgccg accatctcca
     1801 tgaccgtcag cgtcaacgac agcccgctgg ccggccgcga aggcgacaag gtgcagagcc
     1861 gggtcatcgc cgcgcgcctg ttgaaggaag ccgagtccaa cgtcgccatc cgggtctccg
     1921 agacccccga ccgggacgcc tatgaggtcg ccggccgcgg cgaactgcag ctcggcgtgc
     1981 tgatcgaaag catgcgccgc gagggcttcg aactgtccat cagccgcccg cgcgtggtgt
     2041 tccgggccga tcccgagacc ggcgagcgga tggagcccat cgaggacgtc atgatcgacg
     2101 tcgacgacga gttctccggc atcgtcatcg agaagctgtc ggcccggaag gccgagctga
     2161 aggacatggg cccctcgggc gcgggcaaga cccggctttc gctgatgagc ccctcgcgct
     2221 ccctgatcgg ctatcagggc gagttcctca ccgacacccg cggttccggc gtgctcaacc
     2281 gcgtgttcag ccactacgag gcctacaagg gccccatcga cgccggccgc aagggcgtcc
     2341 tggtctccaa ctccgagggc gagaccgccg ccttcgcgct ttggaacctg gaagaccgcg
     2401 gcaccatgtt cgtgggcggc ggcgagaaga cctaccaggg catgatcatc ggcgaaaaca
     2461 gccgggctga cgacctcgac gtcaatccga tgaaggccaa gcagctgacc aacatccgct
     2521 ccgccggcaa ggatgaggcc gtgcgcctga tcccgccgcg ccgcccgacc ctcgaacagg
     2581 ccatcgccta tatcgag
//
LOCUS       DATAJL010000773         3300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_84697,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000773 DATAJL010000000
VERSION     DATAJL010000773.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3300
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84697"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..528
                     /locus_tag="VHN39_14735"
     CDS             <1..528
                     /locus_tag="VHN39_14735"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2817648.1"
                     /translation="GLHFEGMQFYFIPAGNPVVNFPTGYASTFMETAQEPVIVSLTGG
                     GAFNFLSLRLGLGDFNMGDADTVAVTGTKANCSQDCTVSTTLTVTNVFQTYALTGFTG
                     LSQISFGQQQLAAQLFPPGPDSGYVAFDNLGFSTGAGGAVPEPASWSLLIAGFAGVGA
                     MIRRGRRSPVQAPIA"
     gene            609..1751
                     /locus_tag="VHN39_14740"
     CDS             609..1751
                     /locus_tag="VHN39_14740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEX2817649.1"
                     /translation="MVTIALPRLAIPRLPVINFDRARLQGLVANRYVGLGAAGLLLAA
                     AAFGLFKTLGPSHHDTNAVRLSLSSAFARAPQGWRENLSSLRGPAQISQDVIRLSERP
                     LAAISVASWNRPGKTTPPPPGAPLVPSPIAGFFAPGPAGPLPIISQDGRTPFEAYRRP
                     FLANGRPKVSLIIGGLGLNSRATQAAIETLPAEITLSFSPYAEGLQGWVDMARAHGHE
                     VLLEAPMEPVDYPDNDPGPMTLMAGAQGPETVKKLEWVLSRVTGYFGVTNYLGSRFLA
                     SDGAYQTFTAALRGRGLAFVDDGSAARRGGPGVVRGSAERVIDDQLNQTAIDQQLLAL
                     EASALQRGQALGSGFAYPVTLEKVAQWSRALDQRGFQLAPASALTH"
     gene            1775..2260
                     /locus_tag="VHN39_14745"
     CDS             1775..2260
                     /locus_tag="VHN39_14745"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEX2817650.1"
                     /translation="MQDLDLYRPNVGVVLFHSDGRVWLGRRAGTPGPHNWQFPQGGVD
                     PGEELEAAARRELAEETGARAATFLGRTQDWVAYDFPPGHGGAKRLRGWKGQKQVWFA
                     FRFEGQDAEFDLAAHGEPEFDAWRWAHLAEAAELIVPFKKAAYVRVVDAFGGFAAPRG
                     V"
     gene            2342..3103
                     /locus_tag="VHN39_14750"
     CDS             2342..3103
                     /locus_tag="VHN39_14750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015923278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2817651.1"
                     /translation="MTSIVMVHGAFCGAWAFEHFRTPFEAAGLNVIAPDLRGHGEGEP
                     SSAVVGVSMTDYADDIAKLCAACPEPPVLLGHSMGGLVAQLAARKASIRALVLLAPSP
                     PWGVAHSSLEEAATAFGVQMMGAFSSGALSPDKSLMRTYSLDRMPKPEQEAAVARLRP
                     ESAMAVRETLNWWLDPFMTTSVGPGAITAPSLVISGQGDVVHSSATARATAERIGASF
                     KIMPGMSHWLLGEPGWEDVAETALLWLAEEVSLAA"
     gene            complement(3087..>3300)
                     /locus_tag="VHN39_14755"
     CDS             complement(3087..>3300)
                     /locus_tag="VHN39_14755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817652.1"
                     /translation="MILAAYAGAALGRLDPKGVWSLSANLVGACLILVSLLLANFNLS
                     STVMEGSWALVALAGLIRLAILRRRG"
BASE COUNT          478 a         1166 c         1123 g          533 t
ORIGIN      
        1 ggcctgcact tcgagggcat gcagttctat ttcatccctg ccggcaatcc ggtcgtcaat
       61 ttcccgacag gctacgcctc gaccttcatg gagacggcgc aggagccggt gatcgtctcc
      121 ctcacgggtg gcggcgcctt caacttcctg tcgctgcgcc tgggattggg cgacttcaat
      181 atgggcgacg ccgacacggt ggcggtcact gggaccaagg ccaattgctc gcaggattgc
      241 acggtaagca cgaccttgac ggtcacgaac gtcttccaga cctatgccct gaccggcttc
      301 accggccttt cgcagatttc cttcggccag cagcaactgg ccgcccaact cttcccgcct
      361 ggtcccgaca gcggctatgt ggcgttcgac aacctcggct tttcgaccgg ggccggcggc
      421 gccgtgcctg aacccgcgtc ctggagcctg ttgatcgcgg gcttcgccgg cgtgggcgcg
      481 atgatccgcc gcgggcgtcg cagcccggtt caggccccca tcgcctaaga aaccgcgtca
      541 atctgggacg atgagaagcc ctcgttaacc ctgttttggc acgctccacg cccaggagct
      601 ccaaagccgt ggtcacgatc gcccttcccc gcctcgccat ccctcgcttg ccggtcataa
      661 acttcgaccg cgcgcggctg caggggctcg tagccaatcg ctacgtcggc ctgggcgcgg
      721 cgggcctgtt gctggccgcc gcggccttcg gcctcttcaa gacactcgga ccgtcgcacc
      781 acgacaccaa cgccgtgcgg ctgtcgctca gttccgcgtt cgcgcgcgcg ccgcaaggtt
      841 ggcgcgagaa cctcagctcg ctgcgtggtc cggcgcagat cagccaggac gtgatccggc
      901 tttccgagcg tccgctggcg gcgatctcgg tggccagctg gaaccggccc ggcaagacga
      961 cgccgccgcc gccgggcgcg ccgctggttc ccagccccat cgccggcttc ttcgcgcccg
     1021 gtccggccgg gcctctgccg atcatctccc aggacggccg cacgcccttc gaggcctatc
     1081 gccggccgtt cctggccaac gggcggccca aggtgtccct gatcatcggc ggcctcggcc
     1141 tcaacagccg cgccacccag gccgccatcg agaccctgcc cgccgagatc accctgtcgt
     1201 tcagccccta tgccgagggc ctgcagggct gggtcgacat ggcccgggct catggccacg
     1261 aggtgctgct cgaggccccc atggagccgg tggactatcc cgacaacgat ccaggtccca
     1321 tgaccctgat ggccggcgcc caggggccgg agacggtcaa gaagctggag tgggtcctgt
     1381 cgcgggtcac cggctacttc ggcgtcacca actatctggg ctcgcggttc ctggcctcgg
     1441 atggagccta tcagaccttc accgccgccc tgcgcggccg aggcctggcc tttgtcgacg
     1501 acggctcggc cgcacggcgc ggcggccccg gcgtggtgcg cggctcggcg gagcgggtga
     1561 tcgacgacca gctcaaccag accgccatcg accagcagct cctggcgctc gaggccagcg
     1621 cgctgcagcg cggccaggcg ctgggctctg gcttcgccta tccggtgacc ctggaaaaag
     1681 tcgcgcagtg gtcgcgggcg ctcgaccagc gcggcttcca gctcgctccg gcctcggcgc
     1741 ttacgcactg atgcgctaaa cgtctgggcg aatgatccag gacctcgacc tctatcggcc
     1801 gaatgttggc gttgtgctgt tccattcgga cggccgtgtc tggctgggcc ggcgcgccgg
     1861 cacgcccggg ccgcacaact ggcagttccc gcagggcggc gtcgatcccg gcgaggagct
     1921 ggaggccgcc gcccggcggg agctcgccga ggagaccggc gcgcgcgccg cgaccttcct
     1981 cgggcgcacc caggactggg tcgcctacga ctttccgccc ggtcacggcg gcgccaagcg
     2041 gctgcgcggc tggaaggggc aaaagcaggt gtggttcgcc ttccgctttg agggtcagga
     2101 cgccgagttc gacctggcgg cgcatgggga gccggagttc gacgcctggc gctgggccca
     2161 cctcgccgaa gccgccgagc tgatcgtacc gttcaagaaa gcagcctatg tgcgggtcgt
     2221 cgacgccttc ggcggctttg ccgcgccccg gggcgtctga aaccctggag gccgtgaggc
     2281 gcttggttct aaagtgaact tcgagatcgg ccgcgcgagc gttgcgcaat tgaggatttg
     2341 aatgacgtcc atcgtcatgg tgcacggcgc cttctgcgga gcctgggctt tcgaacactt
     2401 ccgcacgccc ttcgaggcgg cggggctgaa cgtcatcgca ccggacctca ggggccacgg
     2461 cgagggtgag ccgtcgagcg ccgtggtggg cgtctccatg accgactacg ccgacgatat
     2521 cgccaagctg tgcgccgcgt gcccggagcc gccggtgctg ctgggtcact ccatgggcgg
     2581 actggtggcg cagctggcgg cgcgcaaggc gtcgatccgg gcgctggtgc tgctggcgcc
     2641 ctcgccgccc tggggcgtcg cccattccag cctcgaggag gcggcgaccg ccttcggggt
     2701 gcagatgatg ggcgcctttt cctccggcgc gctctcgccc gacaagagcc tgatgcgaac
     2761 ctacagcttg gaccgcatgc cgaagcccga gcaggaggcc gccgtggccc gcctgcggcc
     2821 ggagagcgcc atggcggtgc gcgagacgct gaactggtgg ctggacccct tcatgaccac
     2881 cagcgtgggt cccggcgcca tcaccgcgcc gtcgctggtg atttccggcc agggcgacgt
     2941 ggtccattcc tccgccaccg cccgggccac cgccgagcgg atcggcgcga gcttcaagat
     3001 catgccgggg atgagccact ggctcttggg tgagccgggc tgggaagacg tggcggagac
     3061 ggcgctgctc tggttggcgg aagaagtcag cctcgccgcc taaggatcgc cagccgtatc
     3121 aggcccgcga gcgcgaccag ggcccaggag ccctccatca ccgtcgagga caggttgaag
     3181 ttggcgagca gcagcgaaac caggatcagg caggcgccga ccagattggc tgagagcgac
     3241 cacacgccct tgggatcgag ccggcccagc gcggcgccgg cgtaggcggc caggatcatc
//
LOCUS       DATAJL010000774         2870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_64305,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000774 DATAJL010000000
VERSION     DATAJL010000774.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_64305"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..952
                     /gene="sigJ"
                     /locus_tag="VHN39_14760"
     CDS             77..952
                     /gene="sigJ"
                     /locus_tag="VHN39_14760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigJ"
                     /protein_id="HEX2817653.1"
                     /translation="MDLGLTDAFEANRPRLARLAYRMLGSVAEAEDVVQDAWLRWTRA
                     GEGVTDPAAWLVRATTRLCIDRLRAAKAERAAYRGPWLPEPLIEPLTADPVERAEDVS
                     VAFLLALERLSPLERAVFLLHDVFDEDYGAVAETLGRSEPAVRQLASRAREHVREARP
                     RFSVSQDEALRLATAFMAAAAQGDMAGLSALLADDAILVSDGGGKRKAALRIMVGRAD
                     IVRLVEGLTWRGGGLANVQDVRAARINGYPGWVISLGDGPETIAFQPGGDGLIAAVYM
                     VRNPEKLAHVEGASA"
     gene            complement(949..1209)
                     /locus_tag="VHN39_14765"
     CDS             complement(949..1209)
                     /locus_tag="VHN39_14765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817654.1"
                     /translation="MWLRLAGALLVTLAAIGALEYFGVSRLLGGRSPDEVQEAAHGRT
                     RELFWLAIFFVVMATSLLAAARRSAGRLRQAVRVRTGRPPLG"
     gene            1346..>2870
                     /gene="dnaG"
                     /locus_tag="VHN39_14770"
     CDS             1346..>2870
                     /gene="dnaG"
                     /locus_tag="VHN39_14770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEX2817655.1"
                     /translation="MRFDERFLDEIKSRLRPSDVIGKTVKLRRQGREYVGLSPFTKEK
                     TPSFYVNDDKGQFFDFSSGKTGDIISFLQESERLTFVEAVERLAAEAGVALPAVDPRA
                     AEQEKVRQGLSEWLELAAQWFEAELRRPVAREARAYLEKRGLPEKDWARFRLGFSPPG
                     RTALKDYLVAKGARPGELVETGLLIAPEEGGAPYDRFRDRIIFPIADARGRVVSFGGR
                     SMDPQARAKYLNGPETSIFHKGHHLYGLAEARKLIAAAPAGEVLPLAVVEGYMDAIAC
                     HRAGIPAVAPMGTALGEDQMEILWRHHPEPTLSFDGDRAGRQAADRTMDRALPLLKPG
                     KSFQFAIVEGGKDPDEVLREQGPAALKAQLANSTPFAEALFLRERDAAPYDTPERKTA
                     LKTRLRKLAATIADGDLAQAYKEDLLGRFEQLWPTRQAVYTVGAAAREMSRARWDKRR
                     NPSGISDANATPEAKDASRRLRVSPRPLAAALALAAVRDPGVIDEKIELVGARGFGDE
                     "
BASE COUNT          434 a         1038 c          996 g          402 t
ORIGIN      
        1 gacctgctcg aaggtgacgg tggccggggt cgccgcgccc gtcgcgcatc tgccactggc
       61 ggcgtaggat cgggccatgg acctcggcct gaccgacgcc ttcgaagcca accggccgcg
      121 actggcgcgt ctcgcttacc gtatgctggg ctcggtggcc gaggctgagg acgtagtgca
      181 ggacgcctgg ctgcgctgga cccgggccgg tgaaggggtc acggacccgg ccgcctggct
      241 ggtgcgggcc acgacgaggc tctgcatcga ccgcctgcgc gccgccaagg ccgagcgcgc
      301 cgcctatcgc ggcccctggc tgccggagcc gctgatcgaa cccctgaccg ccgatccggt
      361 cgaacgggcc gaggacgtct cggtggcctt cctgctcgcc ctggaacgcc tgtccccgct
      421 cgagcgggcg gtattcctgc tgcacgacgt cttcgacgag gactatggcg cggtggccga
      481 gaccctgggg cgctctgagc ccgctgtgcg ccagctcgcc agccgggccc gcgagcatgt
      541 ccgcgaggcc cgtccgcgct tctcggtctc ccaggacgag gcgctgcgcc tggccaccgc
      601 cttcatggcc gccgcggccc agggcgacat ggcgggactc tcggcgttgt tggctgacga
      661 cgccatcctg gtcagcgacg gcggtggcaa gcgcaaggcg gcgctcagga tcatggtcgg
      721 ccgggcggac atcgtgcgct tggtggaagg cctgacctgg cgcggcggcg gcctcgccaa
      781 cgtccaggac gtccgcgccg cccgcatcaa cggctatccg ggctgggtga tcagccttgg
      841 ggatgggccc gagaccatcg ctttccagcc cggcggagac ggcctgatcg cggcggtcta
      901 catggtccga aatccggaaa agctcgccca cgtggagggc gccagcgcct agcctagcgg
      961 gggtcgcccg gtgcggaccc tcacggcctg ccgcagccgc ccagccgacc gccgggcggc
     1021 ggccagcagc gaggtcgcca tcaccacgaa gaagatcgcc agccagaaga gttcgcgggt
     1081 ccggccgtgc gcggcctcct gcacctcgtc gggagagcgt ccgcccagga gccttgagac
     1141 cccgaaatat tcgagggcgc cgatggccgc cagcgtcacc agaagtgcgc ctgcgagacg
     1201 gagccacatg atcaaacgtc cacccccaaa tcaccgcgcg agacggcttt gaacatcggc
     1261 gttcagggcg ctcgcgtcaa atccgcaggg cccgacaaaa gctgtgtctt gccgccgccg
     1321 cgcaggcgcc gtctatgatc tggccatgcg cttcgacgaa cgcttcctgg acgagatcaa
     1381 gtctcgcctg cgcccatccg acgtgatcgg caagacggtg aagctgcgcc gtcaggggcg
     1441 cgagtatgtc ggcctgtcgc ctttcaccaa ggagaagacg ccctcctttt acgtcaacga
     1501 cgacaagggt cagttcttcg atttctcgtc gggcaagacc ggcgacatca tctccttcct
     1561 gcaggagagc gagcggctga ccttcgttga ggcggtcgag cggctggccg ccgaggccgg
     1621 cgtcgccttg cccgccgtcg acccgcgcgc cgccgagcag gagaaggtcc gccagggcct
     1681 ctccgaatgg ctggagctgg ccgcccagtg gttcgaggcg gagctgcgcc gccctgtggc
     1741 ccgcgaggcc cgcgcctatc tggaaaagcg cggcctgccg gaaaaggact gggcgcgctt
     1801 tcgtttaggc ttttcacccc ccggtcgaac ggcgctcaag gactacctgg tcgccaaagg
     1861 ggcccgaccc ggcgagctgg tggagaccgg cctcctgatc gcgccggagg agggcggagc
     1921 gccctatgac cggttccgcg accggatcat atttcccatc gccgacgccc ggggccgggt
     1981 ggtgtccttc ggcggccggt cgatggaccc gcaggcccgc gccaaatatc tgaacggacc
     2041 ggagacctcg atcttccaca agggccacca cctctatggc ctggccgagg cgcgcaagct
     2101 gatcgccgcc gcgcccgccg gagaggtcct gccgctggcg gtggtcgagg gctacatgga
     2161 cgccatcgcc tgtcatcggg cgggcattcc ggccgtggcg cccatgggca cggcgctggg
     2221 cgaggatcag atggagatcc tctggcgcca ccatccggag ccgacgctga gcttcgacgg
     2281 cgaccgcgcc gggcgtcagg ccgccgaccg gaccatggac cgggcgctac cgctgctgaa
     2341 gcccggaaag agcttccagt tcgccatcgt cgagggcggc aaggaccccg acgaggtgct
     2401 gcgcgagcag ggtccggcgg cgctgaaggc ccagctcgcc aattcgacgc ccttcgccga
     2461 ggcgctgttc ctgcgcgaac gcgacgccgc gccctacgac acgccagagc gcaagaccgc
     2521 gctcaagact cgcctccgga agctcgccgc caccatcgcc gacggggacc tcgcccaggc
     2581 ctacaaggaa gacctgctgg gccgcttcga gcagctctgg cccacccgtc aggcggtcta
     2641 caccgtgggc gccgcggccc gcgagatgtc ccgcgcccgc tgggacaagc gccgcaatcc
     2701 ctccggcatc tccgacgcca acgccacgcc cgaggccaag gacgcgagcc gccgcctgcg
     2761 ggtctcgccc cgcccgctgg ccgccgccct ggcgctggcc gccgtgcgcg atcccggcgt
     2821 catcgacgag aagatcgagc tggtcggcgc ccgcggcttc ggggacgaga
//
LOCUS       DATAJL010000775         3068 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_70811,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000775 DATAJL010000000
VERSION     DATAJL010000775.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70811"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            13..114
                     /locus_tag="VHN39_14775"
     CDS             13..114
                     /locus_tag="VHN39_14775"
                     /inference="COORDINATES: protein motif:HMM:NF016828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817656.1"
                     /translation="MIAALVAVVLVTALGAMGNKLSGTFQSVSNNLP"
     gene            254..763
                     /locus_tag="VHN39_14780"
     CDS             254..763
                     /locus_tag="VHN39_14780"
                     /EC_number="3.4.23.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEX2817657.1"
                     /translation="MIHLFQTALLLIFPVLVIGAALRDATSYTIPNWLSLVLIGAFPV
                     AALALGLPLAAIGLNLGVGFAALAIGMGMFALGWIGGGDAKLFAAAALWIGWPAAITY
                     LAVTGMAGGALAVGLLGLRSAYVRPFVPTGPAWFARLAEPGENVPYGVAIAIGALAAF
                     PACALVGRL"
     gene            997..2373
                     /locus_tag="VHN39_14785"
     CDS             997..2373
                     /locus_tag="VHN39_14785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HEX2817658.1"
                     /translation="MSDVILDGFDGPVIPVQSLTEAETGPVLEKIPAGARAFAGMSEF
                     KGKAGQILLVPGAEGVSQVLFGLGAGGDPMVFRSLAGKLPAGNYRIGRTPQGLSAEQI
                     ALAFALGSYRFDRYKAHGAEKAKLVVEGIDAAEVRQVAHACALARDMINTPANDMGPL
                     QIETIAREIAEQHGAKIAVVTGDDLLSENYPAVHAVGRAADPARAPRMIEISWGAAKN
                     PLVCLVGKGVVFDTGGLDIKPSAGMRQMKKDMGGAAHALALGRMIMAAKLPVRLAILT
                     PVVENAISGDAMRPGDVLASRKGLSIEVGNTDAEGRLILADALTRASELEPALTLDLA
                     TLTGAARVALGPQLPPFYTDDEGLAAEIEAAAKAESDPIWRMPLWKGYVDALDSDVAE
                     IKNDPDAWAQAGSVTAALFLQRFAPAGPWAHFDIFAWNPRNRPGHPAGAEAQAIRGLY
                     RMIRDRFA"
     gene            2373..>3068
                     /locus_tag="VHN39_14790"
     CDS             2373..>3068
                     /locus_tag="VHN39_14790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HEX2817659.1"
                     /translation="MPLLPERDGRTTPIRDGIASRSLEGIVRAEVYLDPTVMGCVVPA
                     AGIHRAADAASEQMDQLLFGETFEVIEEESAWVWGQARRDGYVGFVAAAALKPLPPPL
                     IQSEPTHRISAIRTYAFAGPSIKTQASGPYSMNALVAVDAEEGRLARVAGAGWMAAEH
                     LAPIGTFETDLAAVAERFLGAPYLWGGRESLGLDCSGLVQAALFACGLACPRDADQQA
                     GLGREIAREDFGRG"
BASE COUNT          442 a         1048 c         1090 g          488 t
ORIGIN      
        1 atcgaatacg gtctgatcgc cgcgcttgtc gccgtggttc tcgtgaccgc gcttggggcc
       61 atgggcaaca agctctccgg cacgttccaa tcggtcagta acaacctgcc ctaacagccc
      121 atcgagggct ttctacaaag accccccgac gggcgaccgt cggggggttt tcgtttgcgc
      181 cagccgaggc ctcgccggag cgaaaccctc cgttcatcgg catggcccat gctgggggcc
      241 catggagctc gcgatgatcc atctcttcca gacggcgctg ctgctgatct tccctgtgct
      301 ggtgatcggc gcagccctgc gcgacgccac aagctacacc atccccaact ggctctccct
      361 ggtcctgatc ggcgcctttc cggtggccgc cctggccctg ggccttcccc tggccgccat
      421 cggcctgaac ctgggcgttg gctttgcggc gctggcgatc ggcatgggca tgttcgccct
      481 gggctggatc ggcggcggcg acgccaagct gttcgccgcc gccgcgctgt ggatcggctg
      541 gccggccgcg atcacctatc tggcggtgac cggcatggcc ggcggcgcgc tggccgtggg
      601 cctgctgggc ctgcgctcgg cctatgtgcg tccgttcgtg ccgactggcc cggcctggtt
      661 cgcccgcctg gccgagcccg gcgagaacgt gccctatggc gtggccatcg cgatcggcgc
      721 gctggccgcc ttcccggcct gcgccctggt cggacgcctc tagagctggt gtgctggacc
      781 tgaagttcgc ctgaatatcg gtctgaacgc tgagcaaact tcagatccaa gaagcacacc
      841 agaagacata gacttgctag tgtcctcatc gattccgaag ttcgtccggc gccggccgca
      901 agcgcttgcg aacttcggaa tcgggacact agttgcggcc gcggcgcggt tgagactagg
      961 acaggatcgg tctcctttcc cgcaaaggcg cacaccatgt ccgacgtgat cctcgatggc
     1021 ttcgatggcc cggtgatccc cgtgcagtcg cttaccgagg ccgagaccgg accggtcctg
     1081 gagaaaatcc cggcgggcgc cagggctttc gccggcatgt cggagttcaa gggcaaggcc
     1141 gggcagatcc tgctggtccc gggcgccgag ggggtgtccc aggtgctgtt cggcctgggc
     1201 gccggcggcg accccatggt cttccgctcc ctggccggca agctgcccgc cgggaactac
     1261 cggatcgggc ggacgccgca ggggctgagc gccgagcaga tcgcgttggc cttcgcgctc
     1321 gggagctacc ggttcgaccg ctacaaggcc catggcgcgg aaaaggcgaa gctggttgtc
     1381 gagggcatcg acgccgccga ggtccgccag gtggcccatg cctgcgctct ggctcgcgac
     1441 atgatcaaca ccccggccaa cgacatgggg ccgctgcaga tcgagaccat cgcccgcgag
     1501 atcgccgagc agcatggcgc gaagatcgcg gtggtcaccg gcgatgacct gctgagcgag
     1561 aactatcccg ccgtccacgc cgtcggccgc gccgccgatc cggcccgcgc gcccaggatg
     1621 atcgagatca gttggggggc ggcgaagaat cccctggtct gcctggtggg caagggggtg
     1681 gtgttcgaca ccggcggcct cgacatcaag ccctcggccg gcatgcggca gatgaagaag
     1741 gacatgggcg gcgcggccca tgcgctggcg ctcgggcgga tgatcatggc ggcgaagctg
     1801 ccggtcagac tggcgatcct gacgccggtg gtggagaacg ccatctcggg cgacgccatg
     1861 cggccgggcg acgtgctggc ctcgcgcaag gggctctcca tcgaggtcgg caacaccgat
     1921 gcggagggcc ggctgatcct cgccgacgcg ctcacccggg ccagcgagct ggagccggcg
     1981 ctgaccctcg acctggccac gctgaccggg gcggcgcgag tggcgctggg gccgcagctg
     2041 ccgccgttct acaccgacga cgagggcctg gcggccgaga tcgaggccgc cgccaaggcc
     2101 gagtccgacc ccatctggcg gatgccgctc tggaaggggt acgtcgatgc gctggacagc
     2161 gacgtggccg agatcaagaa cgaccccgac gcctgggccc aggcgggctc ggtgaccgcg
     2221 gcgctcttcc tgcagcggtt cgcgccggcg gggccgtggg cgcatttcga catattcgcc
     2281 tggaacccgc gcaaccggcc cggccatccg gccggcgcgg aggcgcaggc gatccgcggc
     2341 ctctaccgga tgatccggga ccggttcgcc tgatgcccct cttgccggaa agggatgggc
     2401 gaaccacccc gatccgggac ggaatcgcca gccggtcgct ggaggggatc gttcgcgccg
     2461 aggtctatct ggatccgacg gtgatgggat gcgtggttcc cgccgccggc atccatcgcg
     2521 ccgccgacgc ggcctccgag caaatggacc agctgctgtt cggcgagacc ttcgaggtca
     2581 tcgaggagga gagcgcctgg gtctggggcc aggccaggcg cgacggttat gtgggatttg
     2641 tggcggccgc cgcgctaaag cctctgccgc cccctttgat ccagagtgag cccacgcacc
     2701 ggatcagcgc gatccgcacc tacgccttcg ccgggcccag catcaagact caggcgtcag
     2761 ggccctattc gatgaacgcg cttgtggccg tggacgcgga ggagggccgg ctggcgcggg
     2821 tcgcgggcgc cggctggatg gccgccgagc acctggcgcc catcgggacc ttcgagaccg
     2881 acctggccgc ggtggccgaa cgtttcctcg gcgcgccgta cctgtggggc gggcgcgaga
     2941 gcctcggcct cgactgttcg gggctggtgc aggccgcgct gttcgcctgc ggcctggctt
     3001 gcccgcgtga cgccgaccag caggctgggc tcggccggga gatcgcccgc gaagacttcg
     3061 gccgtggc
//
LOCUS       DATAJL010000776         2270 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97031,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000776 DATAJL010000000
VERSION     DATAJL010000776.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97031"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..859)
                     /locus_tag="VHN39_14795"
     CDS             complement(<1..859)
                     /locus_tag="VHN39_14795"
                     /inference="COORDINATES: protein motif:HMM:NF024874.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2817660.1"
                     /translation="MRIRYIANACFQITLSNGKTLLTDPWIEGPCQQTWFNFPPVGDA
                     LRAEVYGSKPDCLYISHLHHDHLHPRTLAHLDRATPILIGKLNTPNLKGALARLGFSA
                     ITEIGFEHRTSVAALGCDVVIFKDFHGNTQGDATLVEYDLDTSIYVYDADGSTLFDAV
                     DNTILPADAARIAAEYGAPDVAILPYASASLYPMAMAEFDAGQKAAASRRIRERTAGN
                     FAANFAAIGARQVVPAGGEYVLGGPVADLSQYLPQPLGRELAARLGDRAEALRKLYPG
                     DALDAATGAV"
     gene            complement(864..1751)
                     /locus_tag="VHN39_14800"
     CDS             complement(864..1751)
                     /locus_tag="VHN39_14800"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2817661.1"
                     /translation="MTEAVPHALSIHKDGWRSIAPAPTPGELKAFYSGAYFQDSHGTY
                     AQAYSDVELKHRALLADLMLHALAEARGTSGRLLEIGCGEGWFLKAALAAGYQARGLE
                     FSDYGLKRFNPQLAPCVEFGDAFEALDRLIDARAQVDVCVMEHVLEHVLDPQALLARL
                     PAILAPGGAVAITVPNDFSAVQLRARALGHIDRDFWVAPPQHLNYFNSETLPRLLERM
                     GFEVLGGYASFPIDWFLFHPGSNYVADPEAGKATHQARMALDLVMAENGMAAFHGLAK
                     ALLACGVGRSLTVIARPRA"
     gene            1915..>2270
                     /locus_tag="VHN39_14805"
     CDS             1915..>2270
                     /locus_tag="VHN39_14805"
                     /inference="COORDINATES: protein motif:HMM:NF015898.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0045892 - negative regulation of
                     DNA-templated transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BlaI/MecI/CopY family transcriptional regulator"
                     /protein_id="HEX2817662.1"
                     /translation="MLTPLELQIMQVLWDGGPGTVAAVQEKLGSDLAYTTVQTMLTVL
                     LRKKKVRRTQAGRAFTYQAAISREGAVGATVTDLVSRMFGGSGEARATCSGVICLVSI
                     SAISSASRLVNGDDEEG"
BASE COUNT          366 a          770 c          773 g          361 t
ORIGIN      
        1 ccacagcccc cgtcgcggcg tccagcgcat cgccggggta gagcttgcgc agggcttcgg
       61 ccctgtctcc cagccgcgcc gcgagctcgc ggccgagcgg ctgcggcagg tattgcgaca
      121 ggtccgccac cggcccgccc agcacatatt ccccgccagc cggcacgacc tggcgcgcgc
      181 cgatcgccgc gaaattggcc gcgaaattgc cggcggtgcg ctcgcggata cgccggctgg
      241 cggcggcttt ctgccccgcg tcgaactccg ccatagccat cggatagagc gaagccgagg
      301 cgtagggcag gatcgccacg tccggcgccc cgtactcggc ggcgatccgc gctgcatcgg
      361 ccggaagaat ggtgttgtcc accgcatcga acagggtcga gccgtcggcg tcatagacgt
      421 agatcgaggt gtcgaggtcg tattccacca gcgtcgcgtc gccctgggtg ttgccgtgga
      481 agtccttgaa gatcaccacg tcgcagccta gcgctgcaac ggatgtgcgg tgctcgaacc
      541 cgatctcggt gatcgccgag aaccccagcc tggcgagggc gcccttcagg ttcggcgtgt
      601 tcagcttgcc gatcaggatt ggggtcgccc ggtccagatg cgccaatgtc cgcgggtgca
      661 ggtgatcgtg gtgcaggtgg ctgatgtaga gacagtccgg cttcgaccca tagacctcgg
      721 cgcgcagggc gtctcccacc ggcggaaaat tgaaccaggt ctgctggcag ggcccctcga
      781 tccaggggtc ggtcagcagc gtcttgccgt ttgaaagcgt gatctggaaa caggcgttgg
      841 cgatgtagcg gatccgcacg gcgctaggct ctcggccggg cgatcacggt gaggctgcgg
      901 ccgaccccac aggccagcag cgccttggcc agcccatgga acgccgccat gccgttctcg
      961 gccatcacta ggtccagcgc catgcgcgcc tgatgcgtcg cctttccggc ctccggatcg
     1021 gccacatagt tcgagccggg gtggaacagg aaccagtcga tcggaaagct cgcgtagccg
     1081 cccagcacct cgaaccccat ccgctccagc aggcgcggca gggtctctga gttgaagtag
     1141 ttgaggtgct gcggcggggc gacccagaag tcgcggtcaa tatgtcccag cgccctggcc
     1201 cgcagctgca cggcgctgaa gtcgttgggc acggtgatcg ccacggctcc gccgggcgcc
     1261 aggatcgccg gcagccgggc gagcagcgcc tgcgggtcca gcacatgctc cagcacgtgt
     1321 tccatgacgc agacgtcgac ctgggcgcgc gcgtcgatca gccggtccag cgcctcgaag
     1381 gcgtcgccga actcgacgca gggcgcgagc tgcgggttga accgcttcag cccatagtcg
     1441 gaaaactcca gcccccgcgc ctggtagccg gcggcgagcg cggccttgag gaaccagccc
     1501 tcgccgcagc cgatctccag cagccgcccg cttgtccccc gcgcctcggc gagcgcatgc
     1561 agcatcaggt cggccagcag cgcccggtgc ttcagctcca cgtccgaata ggcctgggcg
     1621 taggtgccgt gcgagtcctg gaaataggcc cccgaataga acgccttcag ctctcccggg
     1681 gtgggcgcgg gcgcgatgct gcgccacccg tccttgtgga tgctgagtgc gtgagggacg
     1741 gcctcggtca tgcccgggac ctaagcgcag acatggttaa cccccgattt aggcagccca
     1801 ggtcgaattc ctactaaaag tttagttgac caggctgccg acccggcgct ccctatgtcc
     1861 gaagacttta ggagttcgac cttggcgata tcctcccgcg gacgggcgag cggcatgctc
     1921 acccccctcg aactccagat catgcaggtc ctgtgggatg gcgggccggg cacggtggcc
     1981 gcggtgcagg agaagctcgg ctccgacctc gcctacacga cggtgcagac catgctgacc
     2041 gtgctgctgc gcaagaagaa ggtccgccgc acccaggcgg gccgcgcctt cacctaccaa
     2101 gccgcgatca gccgtgaggg cgcggtgggc gccacggtca ccgatctggt gtcgcgcatg
     2161 ttcggtggct cgggcgaggc gcgggcgacc tgttccggcg tgatctgctt ggtgtcgatc
     2221 agcgccatca gcagcgcctc gcggctggtc aacggcgacg acgaggaggg
//
LOCUS       DATAJL010000777         5475 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97033,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000777 DATAJL010000000
VERSION     DATAJL010000777.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5475)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5475)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5475
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97033"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VHN39_14810"
     CDS             complement(<1..280)
                     /locus_tag="VHN39_14810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEX2817663.1"
                     /translation="MNRSTRIVWAARWLLLAASLVCAFGMLGPYRGLERAFVPWDKAA
                     HFMAFYGLTLLMFVGFPGRRRLDLVVLATCAGAAAEVLQLLVGRDGEVG"
     gene            complement(335..1711)
                     /locus_tag="VHN39_14815"
     CDS             complement(335..1711)
                     /locus_tag="VHN39_14815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEX2817664.1"
                     /translation="MDRPAAQASSVAGGRLRPIRTELAELLKLSGPVVISRLGIMAMG
                     LSDAIVVGRYSATQLGYHALGWAPTSVIVTMAIGLLSGVQVMTARAIGEGRLHDTGAV
                     LRRGLGYSLWIGLISAGVLALLGRLFLHSIGLEKSLADGASPVLLVFCLSLPSYALSV
                     SASFWMEGLSRPGPGAWAMWIANGINLALDLVLVPGHFGLTALGAMGGAWATTGARTF
                     LAVFMLGYIALMPDARALGVFDKPERDRAAETEQRRVGFGAGVSNFAEVAAFASLNVI
                     CGWMGGLAVAAWTIVLNVAALVFMVPLGLSTGAAVRVGQAYGARDGRGVVRAGLVAFG
                     VTSVFGALVGLVVWPNAALISSGYTANPATLAMAIPALIVTCLMYWPDSLQVVTAQAL
                     RARGDVWLPSGAHLTSYILLMMPLAWWLGIPMHLGIMGVAWAVVIASFVSAAFLLTRF
                     WVLSRGPL"
     gene            1876..2361
                     /locus_tag="VHN39_14820"
     CDS             1876..2361
                     /locus_tag="VHN39_14820"
                     /inference="COORDINATES: protein motif:HMM:NF025196.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4188 domain-containing protein"
                     /protein_id="HEX2817665.1"
                     /translation="MARIVEKRVCSEMDGGFVVFLIGMRVNKPWKIWKWLPVATAMPR
                     MLIELAKQPELGLLHAENQFSFPNVTVTQYWKSFEALEAYAKARDKAHLPVWQAFNKA
                     VASNGDVGIWHETYVIEPGKYENIYNNMPPYGLGAVGRIVDAVGARQAARQRVKGKVA
                     A"
     gene            complement(2383..3108)
                     /locus_tag="VHN39_14825"
     CDS             complement(2383..3108)
                     /locus_tag="VHN39_14825"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEX2817666.1"
                     /translation="MRPVANLAAALAIAAAAQLAMAAPALAQTGEAAFRTTTLSLSAQ
                     GETRLKPDIVTLSLGVTSEAATAQAASAEASQKINAVVQALRSAGVAQRDIQTQWVQL
                     TPRYSERSGSPRQIVAQQASSTLTVTVRDIGRAGAVLDLSVAAGANLVQGVRFGLADP
                     AAPQRQARDQALRALQTEAVEVATVMGQRVVRLVSVNTQAYSDVVVTASRMAAPMAAG
                     ASIEPGELTVRADANGVFELAPR"
     gene            3389..4420
                     /locus_tag="VHN39_14830"
     CDS             3389..4420
                     /locus_tag="VHN39_14830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817667.1"
                     /translation="MRHLSALIVIAALLAGGAQAGAYRAPRTASGQPDLQGLWTNTSM
                     TSLVRPPMVKGLVPTDAEAAAFNKAIMSFLADIISNAPIDPNKPAPEVVKAVGNNDWL
                     EADLHLGHVGGQVRSSWIVEPADGQLPLTDAGKALAKAMGRGNLYDGPEVRPMTERCV
                     TAIGAPEGPPMMNTGFNANYQIVQTRDYVAIEVEMNHDVRIIRLTDRAHPPAAMLRWM
                     GDSVGWWEGDTLVVESANFHPQGTLIGGVFGAFAYRPQSIVRERFTRTSKDEILYQFT
                     VEDPVIFSKPWRAEMSFRPTKGPIYEYACHEGNYGVALALAGARYQEREAAAQAAKPA
                     PAAGPSAPR"
     gene            4417..5445
                     /locus_tag="VHN39_14835"
     CDS             4417..5445
                     /locus_tag="VHN39_14835"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEX2817668.1"
                     /translation="MTDDLMMRAAVITRYGSPDVVEVGDAPKPLPAAGEVLVRVHAAT
                     VNRTDCGELRPGILGRLFFGLRRPRRTIFGFDFAGVVEAVGAEATAFKPGDRVFGMCS
                     HRSSGAQADYVCVPESGPIAVMPANCLFDEAVVCEGAYYADSGLKKFHVGPGHKILIY
                     GASGAIGSSAVQLAKAYGAEVTAVVPTRHLELARSLGADRVIDYTAEDFSRIGERFDF
                     VFEAVGKSSYFRYRRLLKPGGAFIATDAGPWGQYLPLLLWSAIAKDNRVVVPLPPRGG
                     GHAFVAFLKARMEAGQFRAVIDRSYPLEAIAEAYRYVETGQKAGIVVIKVAAADELKK
                     PGSPPSRG"
BASE COUNT          929 a         1899 c         1905 g          742 t
ORIGIN      
        1 cgccgacctc gccatcgcgg cccaccagta actgaaggac ttcggcggcg gcgcctgcgc
       61 aggtggccag gacgaccagg tccagacgcc gccggccggg gaagcccacg aacatcagca
      121 gggtcaggcc gtagaaggcc atgaagtggg cggccttgtc ccaggggacg aaggcccgct
      181 cgagtccgcg gtagggcccc agcatgccga aggcgcagac gaggctcgcg gccagcagca
      241 gccagcgggc ggcccagaca attcttgtcg agcgattcat cgcgccagca tgacccgcgc
      301 gaatgaattc caggttcacg ccgccctggt gtccctagag cggtccgcgg ctcagcaccc
      361 agaagcgggt gagcaggaag gcggccgaga cgaagctggc gatcaccacc gcccaggcga
      421 cccccatgat gcccaggtgc atcgggatgc ccagccacca ggcgagcggc atcatcagca
      481 ggatgtagct ggtcaggtgc gcgccgctgg ggagccagac atcgccgcgc gcgcgcagcg
      541 cctgggcggt cacgacctgc agagagtccg gccagtacat caggcaggtg acgatcagcg
      601 ctgggatcgc catggccaga gtcgcggggt ttgccgtgta gcccgacgag atcagcgccg
      661 cgttcggcca gaccaccagg cccaccaggg cgccaaacac tgaggtcacg ccgaaggcca
      721 cgagccccgc gcgaaccacg ccgcggccgt cgcgggcgcc ataggcctgc cccacccgca
      781 ccgccgcccc ggtagagagg cccagcggca ccatgaagac gagggccgcg acgttcagca
      841 cgatggtcca ggccgccacc gcaagcccgc ccatccagcc gcagatcacg ttcaggctgg
      901 caaaagccgc cacctcggcg aagttggaga cgccggcgcc gaagccgacc cgccgctgct
      961 ccgtctcggc ggcgcggtcg cgttcgggct tgtcgaagac gcccagggcg cgcgcgtcgg
     1021 gcatcagggc gatgtagccc agcatgaaga ccgccaggaa ggtcctggcc ccggtcgtgg
     1081 cccaggcgcc gcccatggcc cccagcgccg tcaggccgaa gtggccgggc accaggacca
     1141 ggtccagcgc cagattgatg ccgttggcga tccacatcgc ccaggcgccg gggccaggcc
     1201 gcgacaggcc ctccatccag aagctggcgc tgacgctgag cgcatagctg ggcaacgaca
     1261 ggcagaagac cagcagcacg ggcgaggccc catcggcgag gctcttctcc agcccgatcg
     1321 aatgcaggaa cagccgaccg agcagggcca gcacgccggc cgagatgaga ccgatccaca
     1381 ggctgtagcc gagcccgcgg cgcagcaccg cgccggtgtc atgcagccgg ccctcgccga
     1441 tggcgcgcgc ggtcatcacc tgcacgccgg agagcaggcc gatggccatg gtgacgatca
     1501 cgctggtcgg cgcccagccg agcgcgtggt agccgagctg cgtcgccgaa tagcggccga
     1561 ccacgatggc gtccgacagc cccatggcca tgatccccag gcgcgagatc accaccggcc
     1621 cggaaagctt cagaagctcg gccagttcag tgcggatagg gcgcagacgc cctcccgcga
     1681 cggaggacgc ctgggccgcg gggcggtcca tgacggtgac acctggtttt caaagagggc
     1741 cggacactgg cgcctgcgtc aaaaatggca agccgagctt gaccggcccg tcgccacaag
     1801 ccgccgacgt ggcgcggaag gcacatcgga aaacccgcgt tcgaccgtat ggttggtgaa
     1861 acgggaagca tccgcatggc caggatcgtc gaaaagcgcg tctgctcaga gatggacggc
     1921 ggcttcgtcg tcttcctgat cggcatgcgg gtgaacaagc cctggaagat ctggaagtgg
     1981 ctgccggtgg ccaccgccat gcccaggatg ctgatcgaac tcgccaagca gcccgagctc
     2041 ggcctgttgc acgccgagaa ccagttcagt ttcccgaacg tgaccgtcac ccagtactgg
     2101 aaaagcttcg aggcgctgga agcctacgcc aaggcccgcg acaaggccca cctgccggtc
     2161 tggcaggcct tcaacaaggc cgtggcctcc aacggcgacg tcggcatctg gcacgagacc
     2221 tatgtcatcg agcccggcaa gtacgagaac atctacaaca acatgccgcc ctacggcctg
     2281 ggcgcggtgg gccgcatcgt cgatgcggtg ggcgcccggc aggcggcgcg ccagcgggtg
     2341 aagggcaagg tcgcggcctg actcggttca gacgcgcaaa ccctaccgag gcgcgagctc
     2401 gaacaccccg ttggcgtccg cgcgcacggt gagctctccc ggctcgattg acgcgccggc
     2461 cgccatgggc gccgccatgc ggctggccgt gaccaccacg tcggaatagg cctgggtgtt
     2521 cacgctgacc aggcggacca cccgctgtcc catgaccgtg gcaacctcga cggcctccgt
     2581 ctggagcgcg cgaagggcct ggtcgcgcgc ctggcgttgc ggcgccgccg ggtcggcgag
     2641 accgaacctg acgccctgca ccaggttggc gccggcggcc accgagagat ccagcaccgc
     2701 cccggcgcgg ccaatgtcac gcaccgtcac cgtcagggtc gatgacgcct gctgcgccac
     2761 gatctggcgg ggcgagcctg agcgttcgga atacctcggc gtcagctgca cccactgggt
     2821 ctggatgtcg cgctgcgcaa cgccggcgct ccgcaacgcc tggaccaccg cgttgatctt
     2881 ctgcgaggct tccgcgctgg cggcctgcgc cgtcgcagcc tcgctggtga cgccgagact
     2941 aagggtgacg atgtcgggct tgaggcgcgt ctcgccctgc gcggacagac tgagggtggt
     3001 ggtccggaac gccgcctcgc ccgtctgggc gagcgccggg gcggccatgg ccaactgagc
     3061 cgccgcggcg atcgccaggg cggcggcaag gtttgcgact ggtctcatgg ggaactccgt
     3121 cgacaaggcg accgggcgtc cgccgggcgc tcatcaacac ctaacgcgcc agggctaatg
     3181 tcgggttatt cggggggctg ggcttcgccg gagagcccgc ttggcgcgac ggccgcgcgc
     3241 agacgcctgt cacctgcagt catccttttg atgccgggag ccatggccgc gggaacccgg
     3301 ccgcctacgc tcgccggagc ggcgcgcaca aggtcaggtc ggtaaccggc cttacgccag
     3361 cgctggccag gtcgaccgga gaacagccat gcgccatcta tccgcgctca tcgtcatcgc
     3421 ggccctgctc gccggcggag cccaggcggg cgcgtaccgg gcgccgcgca ccgcgtccgg
     3481 ccagcctgac ctgcagggcc tctggaccaa cacgtccatg acctcgctgg tgcggccgcc
     3541 gatggtcaag ggcctggtcc cgacggacgc cgaggcggcg gccttcaaca aggcgatcat
     3601 gagcttcctc gccgacatca tcagcaacgc gcccatcgat ccgaacaagc cggcgcccga
     3661 ggtggtgaag gcggtgggca acaacgactg gctcgaagcc gacctccacc tcggccacgt
     3721 gggcggccag gtgcgctcgt cgtggatcgt ggagcccgcc gatgggcaac tccccctgac
     3781 cgacgccggc aaggcgctcg ccaaggcgat gggccggggc aacctgtacg acgggccgga
     3841 ggtgcgcccg atgacggaac gctgcgtcac cgccatcggc gcgcccgagg gtccgccgat
     3901 gatgaacacc ggcttcaacg ccaactacca gatcgtgcag accagggact acgtggccat
     3961 cgaggtcgag atgaaccacg atgtgcggat catccgcctg accgaccgcg cgcacccgcc
     4021 ggccgccatg ctgcgctgga tgggggactc ggtgggctgg tgggagggcg acaccctggt
     4081 ggtggagagc gccaacttcc atccgcaggg gaccctgatc ggcggcgtgt tcggggcgtt
     4141 cgcctaccgg ccgcagtcga tcgtgcgcga gcggttcacg cggacctcca aggatgagat
     4201 cctctaccag ttcacggtgg aggacccggt gatcttctcc aagccctggc gcgccgagat
     4261 gtcgttccgt ccgaccaagg gcccgatcta cgaatacgcc tgccacgaag ggaactatgg
     4321 ggtcgctctc gccctggccg gcgcgcgcta tcaggaacgg gaagccgccg cccaagcggc
     4381 caagcccgcc ccggccgccg gtccgagcgc gcccaggtga cggatgatct gatgatgcga
     4441 gccgcggtga tcacgcgcta cgggtcgccg gacgtcgtgg aggtgggcga tgcgccaaag
     4501 cccttgcccg cggcgggcga ggttctggtc cgggtccatg cggcgacggt caaccggacg
     4561 gattgcggcg aactccggcc cggcatcctc gggcggctgt tcttcggcct gcgccggccg
     4621 cgccgcacga tcttcggctt tgacttcgcc ggcgtggtgg aggccgtggg cgccgaggcc
     4681 acggcgttca agccaggcga tcgggtgttc ggcatgtgct cgcaccggag cagcggcgcc
     4741 caggcggact atgtctgcgt cccggagagc gggccgatcg ctgtgatgcc ggcgaactgc
     4801 ctctttgacg aagccgtcgt ctgcgagggc gcctactatg ccgacagcgg gctgaagaaa
     4861 ttccacgtcg gacccggcca taagatcctc atctacggcg cgtccggcgc catcggctcg
     4921 tcggcggtgc agctggcgaa ggcctacggc gccgaggtga ccgcggtcgt ccccacgcga
     4981 cacctggagc tggccaggtc cctcggcgcg gaccgggtca tcgactacac cgctgaggat
     5041 ttcagccgca tcggcgagcg cttcgatttc gtcttcgagg cggtggggaa gtccagctac
     5101 tttcgatacc gcaggctgct gaagcccggt ggtgcgttca tcgcaacgga cgccggaccc
     5161 tggggccagt acctgcccct gctgctctgg tcggcgatcg cgaaggacaa cagggtcgtc
     5221 gtgccgctgc cgccccgagg cggcggccac gcgtttgtgg cgttcctgaa ggcccgcatg
     5281 gaggccggcc agttccgcgc agtgatcgat cgaagctatc ccctcgaggc gatcgccgag
     5341 gcctaccgct atgtcgagac cgggcaaaag gccggcatcg tcgtgatcaa ggtcgccgcg
     5401 gccgacgagc tgaaaaagcc tgggtccccg ccttcgcggg gatgaccggg ttaggttgct
     5461 gagcgctacg ggggc
//
LOCUS       DATAJL010000778         4862 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97079,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000778 DATAJL010000000
VERSION     DATAJL010000778.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4862
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97079"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..973
                     /locus_tag="VHN39_14840"
     CDS             <1..973
                     /locus_tag="VHN39_14840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEX2817669.1"
                     /translation="GGSNFNPKGKSDHEVMRFCQSFMTELYRHIGSDIDVPAGDIGVG
                     GREIGYMFGQYKRITNQFTGVLTGKGLEYGGSLIRTEATGYGCVYFLQNMLKNVGDDV
                     AGKTVVVSGSGNVATHAAEKCVQLGAKVLTLSDSEGFIHDPAGIDQAKIDWIKELKTK
                     RRGRISEYAAAFKGSTFHGDGARPWGVKCDVALPCATQNELNGAEARTLVQNGCMAVS
                     EGANMPTDLEGVHVFKDAQILYAPGKAANAGGVAVSGLEMSQNSARLSWKEADLQQHL
                     LDIMAGIHARCVEYGVRKDSKIIDYVRGANIAGFKKVADAMLAYGVV"
     gene            complement(986..2809)
                     /locus_tag="VHN39_14845"
     CDS             complement(986..2809)
                     /locus_tag="VHN39_14845"
                     /inference="COORDINATES: protein motif:HMM:NF012708.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEX2817670.1"
                     /translation="MAQSITLRLITRQAGGGEIVRVRQIAGSEALIGRGAECDIHLPD
                     LAVDMEHAMLRVTGQSRVSVESLTGEPFLVDGKPALRVELEVVRGHTVTFGEFDLLLG
                     QGGEGDIAVTVKRREDDHGPTPSLFSLKAAMFGRRRMAWTLGLAILALCLVLPFAGVS
                     LMSHLRIHPDQQWSTGPLSKAHAFLEKDCQACHQQAFVAVRDTACLSCHQHGADADTA
                     RIDARVTAKGSPFLPLLISDHAAHDRLLRAMPPPPTLRGRVVSIFQTAMNHPNDRCAS
                     CHREHTTAPPDPAVPATADVVRPGKPALIVVRDCAACHSRLKMRLPSTGLIDTPDWNR
                     HPDFRPLVTTAFDGPQPKLQRVALAAHPLEANGLTFSHRIHMSATGGVARQGQVLGSA
                     RGYGAALTCQSCHRPDGGGFKPMEMERDCGACHSLAFAQVGGQLKTLRHHDMRNIVGV
                     LRGSLAPATAPSVDPAVLHRALAPGGLCVDCHTVRPSAGPLGAEVAPVHLADRVLPWG
                     DFNHGVSAHAGIGKGAAVCADCHKALTSDKSQDLLIEGIATCKACHGKTEHETTAFAS
                     GQCAECHSYHAPGQAPRTGQDRLFTALGLPAGQKPRGLPTF"
     gene            complement(2811..3674)
                     /locus_tag="VHN39_14850"
     CDS             complement(2811..3674)
                     /locus_tag="VHN39_14850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817671.1"
                     /translation="MARAAQSKRRKTSTHESFLRHGGFLFLKASTVLCGVVVAAYVFQ
                     DARPSGGTALGYGLGTLGAVLIVWLALLGIRKRAITAGHYSLKAWVSAHVYLGLSLIV
                     IATLHTGFHFGWNVHTLAYGLMLLVIASGAVGVWFYVTLPKSLSDNRGETTRKQMLAQ
                     LASLDEEIHEAAQPLLRIDADIVRLSLEKTDIGGGFWRRLFGYYGDCANRQAIKQLGP
                     ALRDATGREATALRKVEVLMRRKADALALARRQIHITALLEAWLFVHVPATFALLAAL
                     TAHIVSVFLYW"
     gene            complement(3678..>4862)
                     /locus_tag="VHN39_14855"
     CDS             complement(3678..>4862)
                     /locus_tag="VHN39_14855"
                     /inference="COORDINATES: protein motif:HMM:NF024247.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEX2817672.1"
                     /translation="HLGHQLQGRGATIRAGEDCIVVEIPRTAALKLMAQVAEARETVD
                     RVTTERQILQIFKSGLTPADLAEVLPMAEMMDVKPGQPIMTEGDEGDDLFIIRSGSMV
                     VEKSVGGKQVFLSYVPAGSYSGEMALLDGGRRTATVKAAIRSQVVRLPGEPFRRLLAK
                     KPELATRMRAEVASRRKVNAFVEGRKDNFRGVADMYSSVASFLIDQGIGEATDVLLID
                     ESLCVGCDNCEKACADSHEGLSRLNREAGKTYAKIHVPTSCRHCEHPYCMTDCPPNAI
                     QRGPDGEVFISDACIGCGNCQRNCPYDVIQMDKPPPEKPGLLAWMLFGMGPGPGEPDK
                     AWREKQPKASVEKAKVAIKCDMCIGKAGGPACVRACPTGAAIRVSPEEFLSVALMERG
                     QG"
BASE COUNT          769 a         1617 c         1732 g          744 t
ORIGIN      
        1 gggcgggtcc aacttcaatc cgaagggcaa gtccgaccac gaggtgatgc ggttctgcca
       61 gtcgttcatg accgagctct accggcatat cggctcggac atcgacgtgc cggccggcga
      121 catcggggtc ggcggccgcg agatcggcta catgttcggc cagtacaagc gcatcaccaa
      181 ccagttcacc ggcgttttga ccggcaaggg gctggagtac ggcggcagcc tgatccgcac
      241 cgaggcgacg ggttacggct gcgtctactt cctgcagaac atgctgaaga acgtcggtga
      301 cgacgtggcc ggcaagaccg tcgtggtctc cggctccggc aatgtcgcga cccacgcggc
      361 ggaaaagtgc gtccagctgg gggccaaggt gctgacgctc tcggactccg aaggcttcat
      421 ccacgatccg gccggcatcg accaggccaa gatcgactgg atcaaggaac tcaagaccaa
      481 gcggcgcggg cgcatctcgg aatatgccgc ggcgttcaag ggttcgacct tccacggcga
      541 cggcgcacgg ccctggggcg tcaagtgcga cgtggcgctg ccctgcgcca cccagaacga
      601 gctcaatggc gcggaggccc ggaccctggt ccagaacggc tgcatggcgg tctcggaggg
      661 cgccaacatg cccaccgacc tggaaggcgt tcacgtcttc aaggacgccc agattctcta
      721 tgcgcccggc aaagcggcca acgccggcgg cgtggcggtc tcgggcctgg agatgagcca
      781 gaattcggcg cgcctctcct ggaaggaagc cgacctgcag cagcacctgc tggacatcat
      841 ggccggcatc cacgcccgct gcgtcgagta cggcgtgcgc aaggactcca agatcatcga
      901 ctatgtgcgc ggcgccaata tcgccggctt caagaaggtg gccgacgcca tgctggccta
      961 cggggtggtg tagcgaaacc cggcgctaga acgtcggaag cccgcgcggc ttctggccgg
     1021 ccggcaggcc cagcgccgtg aacaggcggt cctggccggt gcggggcgcc tggccgggcg
     1081 cgtgatagct gtggcactcg gcgcattggc cgctggcgaa ggccgtggtc tcgtgctcgg
     1141 tcttgccgtg gcaggccttg caggtggcga tcccctcgat cagcaggtcc tggctcttgt
     1201 cggaggtcag ggccttgtgg cagtcggcgc agaccgcggc gcccttgccg atccccgcgt
     1261 gggccgagac cccgtggttg aagtcgcccc agggcaggac ccggtcggcc agatgcaccg
     1321 gggccacctc cgcccccaac gggccggccg aggggcgcac ggtgtggcag tcgacgcaga
     1381 gcccgcccgg cgccagcgcg cggtggagca cggcggggtc gacgcttggg gcggtcgccg
     1441 gggccaggga tccgcgcagg acgcccacga tattgcgcat gtcgtggtgg cgaagggtct
     1501 tcagctggcc gccgacctgg gcgaaggcca gagagtggca ggcgccgcag tcgcgctcca
     1561 tctccatcgg cttgaacccg ccgccgtcag gccggtggca ggactggcag gtgagcgccg
     1621 cgccgtaccc ccgcgcactg cccagcactt ggccctgccg cgccaccccg ccggtcgcgc
     1681 tcatgtggat gcggtgagag aaggtgaggc cgttggcctc cagagggtgg gcggccagcg
     1741 cgacccgctg tagcttcggc tgcggaccgt cgaaggcggt ggtcaccagg ggccggaagt
     1801 cggggtgccg gttccagtcc ggcgtgtcga tcaggccggt ggagggcagg cgcatcttca
     1861 accggctgtg acacgccgcg cagtcgcgga ccacgatcag cgccggcttg ccaggcctga
     1921 ccacgtcggc cgtggccgga accgccgggt cgggaggggc ggtggtgtgc tcgcggtggc
     1981 agctggcgca gcggtcgttc gggtggttca tcgccgtctg gaagatcgag acgacccggc
     2041 cgcggagggt gggcggcggc ggcatggccc tgagcagccg gtcatgggcg gcatgatcgg
     2101 agatcagcag gggcaggaac ggactgccct tggccgtcac cctggcgtcg atgcgggcgg
     2161 tatcggcgtc ggcgccgtgc tggtggcagg acaggcacgc ggtgtcgcgg accgccacga
     2221 aggcctgctg gtggcaagcc tggcagtcct tctccaggaa ggcgtgggcc ttggagagcg
     2281 ggcctgtcga ccactgctgg tccggatgaa tacgcaggtg gctcatgagg gagacgccag
     2341 cgaacggcag caccaggcac agcgccagga tcgccaggcc cagcgtccag gccatccgcc
     2401 ggcggccgaa catcgcggcc ttcagcgaga acaggctggg ggtcggtccg tggtcatcct
     2461 cgcggcgctt gacggtgacg gcgatgtcgc cctcgccacc ctggccgagc agcagatcga
     2521 actctccgaa cgtcaccgtg tggccgcgga ccacctccag ctcgacccgc agggcgggct
     2581 tgccgtccac caggaagggt tcgccggtga gcgattcgac gctgacccgg ctttggccag
     2641 tgacccggag catggcgtgc tccatgtcca cggccaggtc cggcagatga atgtcgcatt
     2701 ccgccccgcg cccgatcagc gcctcggacc cggcgatctg ccggacgcgg acgatctctc
     2761 cgcctcccgc ctggcgcgtg atcagccgaa gggtgatcga ttgggccatg tcaccagtag
     2821 aggaagacgc tgacgatgtg cgcggtgagc gccgccagca gggcgaaggt ggctggaacg
     2881 tgcacgaaga gccaggcttc caaaagcgca gtgatgtgaa tctggcgccg cgccagggcg
     2941 agcgcgtcgg ccttgcgacg catcagcact tcgaccttgc gcagggcggt ggcctcgcgg
     3001 cccgtagcgt ccctcaacgc gggtccgagc tgtttgatcg cctgccggtt ggcgcagtcc
     3061 ccgtaatagc cgaaaagccg gcgccagaag ccgccgccga tgtcggtctt ctccagcgac
     3121 aggcgcacga tgtccgcgtc gatccgcagc aacggctggg cggcttcgtg gatttcctca
     3181 tccagcgagg cgagctgcgc cagcatctgc ttgcgcgtgg tctcgccgcg gttgtcgctg
     3241 agcgacttgg gcagggtgac atagaaccag accccgaccg cgccggaggc gatcaccagc
     3301 agcatcaggc cataggccag cgtgtggacg ttccagccga agtggaagcc ggtgtggagg
     3361 gtggcgatga cgatcagcga caggcccaga tagacgtggg cggagaccca ggccttcagc
     3421 gaatagtgac cggcggtgat cgcgcgcttg cggatgccga gcagcgccag ccagacgatc
     3481 agcaccgcgc ccagcgtgcc cagcccatag cccagcgccg tgccgccgct cggccgggcg
     3541 tcctggaaca cataggccgc cacgacgacg ccgcagagca ccgtggatgc cttcaggaac
     3601 aggaagcctc cgtgacgcag gaagctctcg tgcgtcgacg tcttgcgtct cttgctctgc
     3661 gccgccctcg ccaaacctca gccctgtccc cgctccatga gcgccaccga gaggaattcc
     3721 tccggtgaca cccggatggc cgcgccggtc gggcacgcac gaacgcaggc cggccccccg
     3781 gccttgccga tacacatgtc gcacttgatc gcgaccttgg ccttttccac cgaagccttg
     3841 ggctgcttct cgcgccaggc cttgtcgggt tcgccggggc ctgggcccat gccgaacagc
     3901 atccaggcca agaggccggg tttctctggc ggcggcttgt ccatctggat cacatcgtag
     3961 ggacagttgc gctggcagtt gccacagccg atgcaggcgt cggagatgaa cacctcgccg
     4021 tccggtccgc gctggatggc gttgggcggg cagtcggtca tgcaataggg gtgctcgcag
     4081 tgccggcagg aggtcggcac gtgaatcttg gcgtaggtct tgccggcctc gcggttgagg
     4141 cgcgacaggc cttcgtggct gtcggcgcag gccttctcgc agttgtcgca gccgacgcag
     4201 aggctctcgt cgatcagcag cacgtcggtg gcctcgccga tcccctggtc gatcaggaag
     4261 ctggcgacgg aggagtacat gtccgccacg ccgcggaagt tgtccttccg cccttcgacg
     4321 aaggcgttga ccttgcgccg cgaggcgacc tcggcgcgca tgcgggtggc gagctcgggc
     4381 ttcttggcca gcaggcggcg gaacggctcg cccggcaggc gcaccacctg cgagcgtatg
     4441 gcggccttca ccgtcgcggt ccgccgcccg ccgtccagca gcgccatctc gccggaatag
     4501 gaaccggccg gcacgtagga caggaacacc tgtttgccgc ccaccgactt ctccacaacc
     4561 atggagccgg agcggatgat gaagaggtcg tcgccctcgt cgccctcggt catgatcggc
     4621 tggccgggct tgacgtccat catctcggcc atcggcagga cttcggccag gtcggccggc
     4681 gtcaggcccg acttgaagat ctgcaggatc tgccgctcgg tggtgacgcg gtcgacggtc
     4741 tcgcgagcct cggccacctg ggccatcagc ttcagggccg cggtgcgggg gatttcgacg
     4801 acgatgcagt cctcgccggc gcggatcgtc gccccgcggc cctgaagctg atggcccagg
     4861 tg
//
LOCUS       DATAJL010000779         3387 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_84824,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000779 DATAJL010000000
VERSION     DATAJL010000779.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3387
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84824"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..669)
                     /locus_tag="VHN39_14860"
     CDS             complement(<1..669)
                     /locus_tag="VHN39_14860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEX2817673.1"
                     /translation="MNPKTLRAQLLAWYDAHARDLPWRVGPKAHAAGVRADPYRVWLS
                     EVMLQQTTVPHATPYFLKFTARWPAVGDLAAEADGEVMAAWAGLGYYARARNLLACAR
                     AVAGEHGGVFPDTEEGLRVLPGLGAYTAAAVAAIAFNEATNVVDGNVERVMARLFAVE
                     EALPDAKPELKRLAATLIRDDRPGDWAQALMDLGAVICRPKAPLCERCPLNADCDAFA
                     AGAPE"
     gene            714..1265
                     /locus_tag="VHN39_14865"
     CDS             714..1265
                     /locus_tag="VHN39_14865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DciA family protein"
                     /protein_id="HEX2817674.1"
                     /translation="MAPRDLPSTQEALRILTAKRTRPQRRPPPPLGRALNKTLKAFDA
                     RFGQGSGALEARWREVVGAEIAKRTEPVKLTRGRNGGPSSLEIRVAGPSAAIIQHQAH
                     EILARVNLFLGAEAVQKLRIVQGPLQKKYEPAAKPRRKLPPLDAAAEAGLAQDLAKAP
                     DGKLKTALLALGRGVLRQRRAVD"
     gene            1368..1988
                     /locus_tag="VHN39_14870"
     CDS             1368..1988
                     /locus_tag="VHN39_14870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEX2817675.1"
                     /translation="MLVRRSLVATALMAALALGGCGKPVFDSAAVAQADDMSLGDPNA
                     KVAVVEYASASCPHCARFAIDIFPTFKAKYIDTGKVRFTLKEYLTDPQALAAAGFLLA
                     RCAGKDRYFPVLDAYFKGQDEMVQTGDVRSVLARIAKSPGGLSEGQLDACMRDAGAEK
                     ALAARANRHLQIDKISSTPTFIINGQRVEGEMTMPELDAAIAKAAG"
     gene            2014..2667
                     /locus_tag="VHN39_14875"
     CDS             2014..2667
                     /locus_tag="VHN39_14875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX2817676.1"
                     /translation="MLTATLAATFAGSVWAASAAVATPAVLPDDMSMGSPTAKIQVIE
                     YASLACPHCGHFNETIFPSLKAKYIDTGKVRYTLKEMLTEPVTVAAAGFLIARCAGPS
                     KYFIVVDQVFRSQPRWTSGNIKPIFQEIAAANGVDEAHFNACLQDQPGVDAIAGRAKR
                     ASEQDGVDSTPTLFINGKKLATVPQTPDELDAAIAAAVKAPAAKPGAKKSPAKKGGR"
     gene            2675..>3387
                     /locus_tag="VHN39_14880"
     CDS             2675..>3387
                     /locus_tag="VHN39_14880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2817677.1"
                     /translation="MQFQRLRLTGFKSFVETTEFRIEPGVTGVVGPNGCGKSNLLEAL
                     RWVMGANSAKAMRAGGMDDVIFAGAANRPSRNHAEVSLTIDNSDRRAPAAFNDHPVLE
                     VVRRIDRGEGSTYRINGREVRARDVQLLFADASTGSNSPALVRQGQISELIAAKPQNR
                     RMILEEAAGVSGLHSRRHEAELRLRAAEANLARLEDVARELDSTLGRLKREARQAERY
                     KKLSAEIRALQGADFGGELL"
BASE COUNT          551 a         1210 c         1146 g          480 t
ORIGIN      
        1 ttccggcgcg cccgccgcga aagcatcgca gtccgcgttc agcgggcacc gctcacagag
       61 cggcgccttg ggccggcaga tcaccgcgcc caggtccatc agcgcctggg cccagtcgcc
      121 gggccggtca tcccggatca gggtcgcggc caggcgcttc agttccggct tggcgtccgg
      181 cagggcctcc tccaccgcga acagccgcgc catgacccgc tcgacattgc cgtcgacaac
      241 attggtcgcc tcgttgaagg cgatcgcggc gacggcggcg gccgtgtagg cgccaagccc
      301 gggcaggacg cgcaggcctt cctcggtgtc cgggaagacg ccgccatgct cgccggccac
      361 ggcccgggcg caggccagca ggttgcgggc gcgggcgtag tagccgaggc ccgcccaggc
      421 ggccatcacc tctccgtcgg cctccgccgc cagatcgccg accgcgggcc agcgggcggt
      481 gaacttcaga aaatagggcg tggcgtgcgg caccgtcgtc tgctgcagca tcacctcgga
      541 gagccacacc cggtagggat cggcgcggac gccggccgca tgcgccttcg gtcccacccg
      601 ccagggcagg tcgcgggcat gggcgtcgta ccaggcgagg agttgcgcgc gcagcgtctt
      661 ggggttcacg ggaccctcct tatcgccgcc gcgcgatgac ggtaaggtgg cccatggctc
      721 cccgcgacct gcccagcacg caagaggcgc tccgcatcct gacggccaag cgcacgcggc
      781 cgcagcgccg cccgccgccg ccgctcggcc gggcgctgaa caagacgctc aaggctttcg
      841 acgccaggtt cggccagggc tcgggcgctc tggaggcccg ctggcgcgag gtggtgggcg
      901 ccgagatcgc caagcgcacg gagccggtga agctgacccg cgggcgcaat ggcggaccgt
      961 cctcgctgga gatccgggtg gctgggcctt ccgcggcgat catccagcac caggcccatg
     1021 agatattggc gcgggtgaac ctcttcctgg gcgccgaggc cgtccagaaa ctccgcatcg
     1081 tccagggccc gctgcagaag aagtacgagc cggccgccaa gccgcgtcga aagctgccgc
     1141 cgctcgacgc cgcggccgag gccggccttg cccaggatct ggccaaggcc cccgacggca
     1201 agctgaagac ggcgctcctg gcgctcggcc gcggcgttct gcggcagcgc cgggcggttg
     1261 actaacaaga gccgcgatct catcgccttg tggatggggc gagtgctggt tggtggcccc
     1321 gcatggaatc gggctttact cggctcccct aggagaaatg gtcccgcatg ctcgtccgtc
     1381 gttcccttgt cgccacggcc ttgatggccg ccctggcgct tggcggctgc ggcaagcctg
     1441 tctttgacag cgcggccgtc gcccaggctg acgacatgag cctgggcgat ccgaacgcca
     1501 aggtggcggt ggtggaatac gcctcggcga gctgcccgca ctgcgcacgg ttcgccatcg
     1561 acatcttccc gaccttcaag gcgaaataca tcgacaccgg caaggtccgc ttcacactca
     1621 aggaatacct caccgacccg caggcgctgg ccgcggccgg tttcctgttg gcccgctgcg
     1681 ccggcaagga ccgctacttc cccgtgctcg acgcctactt caagggccag gacgagatgg
     1741 tccagaccgg cgatgtgcgt agcgttctgg cgcggatcgc caagtcgccg ggcggcctca
     1801 gcgagggcca gcttgacgcc tgcatgcgcg atgctggcgc ggaaaaggcg ctggccgccc
     1861 gcgcgaaccg gcatctgcag atcgacaaga tcagctcgac ccccaccttc atcatcaacg
     1921 gccagcgggt ggagggcgag atgaccatgc ccgaactcga tgcggccatc gccaaggcgg
     1981 cggggtagga ttgcgatgct gaaccgccgc tctgtgctga ccgccaccct cgccgccacg
     2041 tttgccggaa gtgtctgggc cgccagcgcc gctgtcgcca cgccggccgt cctgcccgac
     2101 gacatgtcca tgggcagccc gacagcgaag atccaggtga tcgaatacgc gtccctggcc
     2161 tgcccgcatt gcggccactt caacgagacg atcttcccgt ccctgaaggc caagtacatc
     2221 gacaccggca aggtgcgtta cacgctcaag gagatgctga ccgaacccgt tacggtggcg
     2281 gcggccggct tcctgatcgc gcgctgcgcc gggccctcca agtacttcat cgtggtggat
     2341 caggtgttcc gcagccagcc acgctggacc agtggtaaca tcaagccgat cttccaggag
     2401 atcgccgcgg ccaacggcgt ggacgaggcc catttcaacg cctgcctgca ggaccagccg
     2461 ggcgtcgatg ccatcgccgg ccgcgcaaag cgcgcgtcag aacaggacgg ggtcgactcg
     2521 acgcccacac tgttcatcaa cggcaagaag ctggcgaccg tcccgcagac gccggacgaa
     2581 ctcgacgccg cgatcgccgc ggcggtcaag gcgccagccg ccaagcccgg tgcgaagaaa
     2641 tccccggcaa aaaagggagg ccgctagacc ctccgtgcag ttccagcggc tacgccttac
     2701 gggcttcaag tccttcgtcg agacgaccga atttcggatc gaaccgggcg tcaccggcgt
     2761 cgtcgggccg aacggctgcg gcaagtcgaa cctgctggag gcgctgcgct gggtgatggg
     2821 cgccaattcc gccaaggcca tgcgggccgg cggcatggac gacgtgatct ttgccggcgc
     2881 cgccaaccgg ccctcgcgca accacgccga ggtcagcctc accatcgaca attccgaccg
     2941 ccgcgcgccg gcggccttca acgaccatcc ggtgctggag gtggtccgcc gcatcgaccg
     3001 gggcgagggc tcgacctatc ggatcaacgg ccgtgaggtc cgcgcccgcg acgtgcagct
     3061 cctgttcgcc gacgcatcca cgggctcgaa ctcgccggcc ctggtgcgtc aggggcagat
     3121 ctccgagttg atcgccgcaa agccgcagaa ccgccggatg atcctggagg aagcggccgg
     3181 ggtctcaggc ctgcactcgc gccgccacga agccgagctg cgcctgcgcg ccgccgaggc
     3241 caatctcgct cggctggagg acgtggcccg cgagctggac tcgacgctgg gccggctgaa
     3301 gcgcgaggcc cgccaggccg agcgctacaa gaagctctcc gccgaaatcc gcgccctgca
     3361 gggcgcggat ttcggcggag agcttct
//
LOCUS       DATAJL010000780         1602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71054,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000780 DATAJL010000000
VERSION     DATAJL010000780.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71054"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VHN39_14885"
     CDS             complement(<1..474)
                     /locus_tag="VHN39_14885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817678.1"
                     /translation="MAPSTAPSTARARIAPDEVHRVVSTALDGGFYRAVNPDLADSGL
                     DSVRHYLLSGWREGRDPAPWFSTRAYVEVYPEVIKAGWNPFCHYLLVGRREGREVVRS
                     VLADDYLLRRARRGEEPAWSFETLAGGAQAADEMAEEAAIRHRERVLAGKEFDAVY"
     gene            618..>1602
                     /locus_tag="VHN39_14890"
     CDS             618..>1602
                     /locus_tag="VHN39_14890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817679.1"
                     /translation="MTTAQVPARPATAPARTAYLVLGMHRSGTSAVTQVLALAGATLP
                     ENVMAGDEHNARGYFEPWKIAMFNDARLRAGGAAWDDIFAFPYKPLATKAERGWLNRA
                     EALFEEEYGEVRFPLLKDPRVTVLMPFWRTVLTELEVAARCVIPVRHPLAVAGSLARR
                     NGFAPEKSVLIWTAYMLAAEAYTRDLPRAFVSYDGLLKDWRSEVVKIEAAHGAALPKM
                     TEAAAKAIDRFLTPELRHNDAATGLKELGWAGALAGQVLDWFEAAAAGKAPGPAALDK
                     AAKELARRGQDIGVLVSPATRDLDEARAELLDLRQRLEFEQGRTQRLETEVE"
BASE COUNT          246 a          574 c          567 g          215 t
ORIGIN      
        1 gtagacggcg tcgaactcct tgcccgccag cacccgctcg cggtgccgga tcgcggcctc
       61 ctcggccatc tcgtcggcgg cctgggcgcc gccggccagg gtctcgaaac tccaggccgg
      121 ctcctccccc cgcctcgcgc ggcgcaggag gtagtcgtcg gccagcaccg agcggacgac
      181 ctcgcgcccc tctctgcggc ccaccagcag atagtggcag aacggattcc agccggcctt
      241 gatgacctct ggatagacct cgacataggc ccgcgtggag aaccagggcg cggggtcccg
      301 cccctcgcgc cagccgctca gcagatagtg gcggacagag tcgagcccgc tgtcagccag
      361 gtccggattg accgcccggt agaagccgcc gtcgagcgcg gtggagacga cccgatggac
      421 ctcgtcaggg gcgatcctgg cccgagccgt ggaaggggcc gtggaagggg ccatgccggc
      481 catgcggcgc aaaatcctgt gcggaactag ggctctgtgc aacagaaggc gtgagcgatc
      541 aaccgggcgg ggaccttgcg gctggaccgc ctcgcccgta gagccaaggc ttcatcaggg
      601 ttgcgaccgg accgtccatg accaccgccc aagtcccggc aaggcccgcc acagctccgg
      661 cgcggaccgc ctatctggtc ctggggatgc accgttcggg cacctcggcg gtgacccagg
      721 tgctggcgct ggccggcgcg accctgccgg aaaacgtcat ggccggcgac gagcacaacg
      781 ccaggggcta cttcgagccc tggaagatcg ccatgttcaa cgacgcgcgg ctcagggccg
      841 gcggcgcggc ctgggacgac atcttcgcct ttccgtacaa gccgctggcc accaaggccg
      901 agcgcggctg gctgaaccgc gccgaggccc tctttgagga ggaatatggc gaggtccgct
      961 ttccgctgct gaaggacccc cgggtcaccg tgctcatgcc cttctggcgc acggtgctga
     1021 ccgagttgga ggtggccgcc cgctgcgtga tcccggtgcg ccaccccctg gcggtggccg
     1081 gctccctggc gcggcggaac ggcttcgcgc cggagaagtc ggtgctgatc tggacggcct
     1141 acatgctggc cgcagaggcc tacacccgcg acctgccccg cgccttcgtc agctacgacg
     1201 gcctgctcaa ggactggcgc tctgaagtgg tgaagatcga ggccgcgcac ggcgccgctc
     1261 tgccgaagat gacggaggcg gccgccaagg ccatcgaccg cttcctgacc ccggagcttc
     1321 gccacaacga cgccgcgacg ggcctgaagg agctcggctg ggccggggcg ctcgctggtc
     1381 aggtgctcga ctggttcgag gccgccgccg cgggcaaggc gcccgggccg gccgcgctgg
     1441 acaaggcggc caaggagctg gcgcgccgcg gccaggacat cggcgtcctg gtctcgcccg
     1501 cgacccgcga cctggacgag gcccgcgcgg aactcctcga cctgcgccag cggctggagt
     1561 tcgagcaggg ccggacccaa cgccttgaga ccgaggtcga gg
//
LOCUS       DATAJL010000781         1695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97157,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000781 DATAJL010000000
VERSION     DATAJL010000781.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97157"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            65..559
                     /locus_tag="VHN39_14895"
     CDS             65..559
                     /locus_tag="VHN39_14895"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077534.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. Subunit B is part of the
                     membrane proton channel; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit B"
                     /protein_id="HEX2817680.1"
                     /translation="MAELITDAHFWVGIAFVVFIAILVMAGVHKFAWKALGDAGDKVR
                     AQLEEANSLREEAQDLLARIQADREASEKLAAEIMANAQEQAKRMQAEAQERLAEQIE
                     RRGQLAERRIATAEAQATAEVKAAAGELAAQMAETVLAARIAGAKTDPLIDAAIGQLA
                     GKLQ"
     gene            complement(668..1012)
                     /locus_tag="VHN39_14900"
     CDS             complement(668..1012)
                     /locus_tag="VHN39_14900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817681.1"
                     /translation="MARWLLIGLGLVLMLVAIPLVALPGHLGLPLMVVGLMIVLRNSF
                     KAKRQFLRMQYAHPKMVFPIRRLMRRDPEIIPVMWQQYLRLERLVLPRRVRFAAKSRR
                     AFRRQFRVRVPL"
     gene            complement(1211..>1695)
                     /locus_tag="VHN39_14905"
     CDS             complement(1211..>1695)
                     /locus_tag="VHN39_14905"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518835.1"
                     /note="acts in conjunction with GvcH to form
                     H-protein-S-aminomethyldihydrolipoyllysine from glycine;
                     forms a heterodimer with subunit 1 to form the P protein;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HEX2817682.1"
                     /translation="YMMSHGADGLKQVAEDAVLNANYLRVRLAGALSQSYPGTCMHEV
                     LFDDRFLKDTGVTTLDFAKALIDEGFHPMTMYFPLVVHGAMLIEPTETESKRELDRFC
                     DALLALAKAAKAGDAERFLGAPYLAPLRRLDETLAARKPKLTWRPEPTTVAPAPLAAE
                     "
BASE COUNT          320 a          551 c          582 g          242 t
ORIGIN      
        1 ggcaagctga ccggacgcgc cgcgagcgcc gcggaactca ccgcggctaa aggatcgtag
       61 gacgatggct gaactgatca ccgacgccca cttctgggtc ggcatcgctt tcgtggtgtt
      121 tatcgctatt ctggtgatgg ccggagtcca caagttcgcc tggaaggcgc tgggggacgc
      181 gggcgacaag gtccgcgccc agctcgaaga ggccaacagc ctgcgcgaag aagcccagga
      241 tcttctggcc cgcattcagg ccgaccgcga ggcgtccgag aagctggccg ccgaaatcat
      301 ggccaacgcc caggagcagg ccaagcgcat gcaggccgaa gcccaggagc ggctggcaga
      361 gcagatcgag cgtcgtgggc aactcgccga gcgccgcatc gccaccgctg aggcccaggc
      421 cacggccgag gtgaaggccg ccgctggcga actcgccgcg cagatggctg aaaccgtgct
      481 cgccgcccgg atcgccggcg ccaagaccga cccgctgatc gacgctgcca tcggccagct
      541 ggccggcaag ctgcagtagc ccggccgctc cggcctgcgc gctgggccag gccgccaaga
      601 aaaacgcccc ggagcgctgc tgcggggcgt tctgatttgg gcccgcgtct tggcgggacg
      661 agcgagacta aaggggcact cgcacccgga actggcgcct aaacgcacgg cgggacttcg
      721 cggcgaagcg tacgcgacgg ggcagcacca gccgctccag ccgcaggtac tgctgccaca
      781 tcaccgggat gatctccggg tcgcggcgca tcaggcggcg gatcgggaag accatcttgg
      841 gatgcgcgta ctgcatccgc aggaactggc gcttggcctt gaacgaattg cgcaggacga
      901 tcatcagccc gaccaccatg agcggcagac cgaggtgtcc cggcagggcg accagcggta
      961 tcgccaccag catgagcacc agccccagcc cgatcagcaa ccagcgagcc acgcgcgcgg
     1021 ctaactcgcg ggcgaactcg tcggaggcgc ggtaaacgcg caaagagggc atggcgaaag
     1081 tcactggagc aaacctggga acgcgcgaaa gcaccggggg gaggcccgaa acgccgcgtc
     1141 gctaacctga tatgcgaacc cgcttaggag tcgtaaaggc ggcggcgatt taaatttttc
     1201 tcatgtcgct ctattcggcc gctaatggcg ccggcgccac agttgtgggc tctgggcgcc
     1261 acgtgagctt cggcttccgg gcggccaggg tttcgtcgag ccggcgcagc ggggcgaggt
     1321 agggtgcgcc caggaagcgt tcggcgtcgc cggccttggc cgcctttgcc agcgccagca
     1381 gggcgtcgca gaaccggtcg agctcgcgct tggactcggt ctcggtgggc tcgatcagca
     1441 tcgcgccgtg caccaccagc gggaaataca tggtcatcgg gtggaagccc tcgtcgatca
     1501 gcgccttggc gaaatcgagc gtggtgaccc cggtgtcctt aaggaaacgg tcgtcgaaca
     1561 gcacctcatg catgcaggtg cccggatagg actggctcag cgcgccggcc agccggaccc
     1621 gcagataatt agcgttgagc acggcgtctt cagcgacttg ctttagcccg tcggcgccgt
     1681 gactcatcat gtaac
//
LOCUS       DATAJL010000782         1749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71143,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000782 DATAJL010000000
VERSION     DATAJL010000782.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71143"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VHN39_14910"
     CDS             <1..495
                     /locus_tag="VHN39_14910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SapC family protein"
                     /protein_id="HEX2817683.1"
                     /translation="AYIRRYPFVFANDDNAKQMVLCVDRAAEFFAETNPDLPFFEADG
                     QPSQYTKNCIEFCNNFEIERQRTASFVQLLKDLDLFETKTANFTPTGPDGALGEPQKI
                     AEYFGVSEEKLNKLPAEKFIELRDNGALPQIYAHLHSLLCWDRLVALALVRQQTQQPV
                     AANS"
     gene            complement(557..949)
                     /locus_tag="VHN39_14915"
     CDS             complement(557..949)
                     /locus_tag="VHN39_14915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl dehydratase"
                     /protein_id="HEX2817684.1"
                     /translation="MPASFDDIEIGQVVSLGAAAVEPEALLAFATAFTPGWAVERGAP
                     DAMVYAIWAKLDAISHTDWPQTKRLGVDALRWVRNPPAGELLRGRMTIMAKDPVGDGK
                     GIIIAQHDLLDEAGRLVFSCLTRSVFAR"
     gene            1102..>1749
                     /locus_tag="VHN39_14920"
     CDS             1102..>1749
                     /locus_tag="VHN39_14920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD
                     domain-containing protein"
                     /protein_id="HEX2817685.1"
                     /translation="MRFLAGVILALMMALPAAAQVPGASRHVAVELVADHQGIAPGET
                     IHVALRQQIEKHWHTYWRNSGDSGEPTRIRWTLPAGWRAGEFTWATPQRIAVGPLMNY
                     GYEGEVLLPMTLTAPANAKPGDKVILNAAVSLLVCAEVCVPEDDALNITLPVTPASAP
                     LDPKWGAPIATALTAAPKPAGLAAVFQPRGPGVALAITGAALKGATLSGAYFYPFE"
BASE COUNT          296 a          612 c          571 g          270 t
ORIGIN      
        1 gcctatatcc gccgctatcc gttcgtcttc gccaacgacg acaacgccaa gcagatggtg
       61 ctgtgcgtcg accgcgccgc cgagttcttc gccgaaacga accccgatct gcccttcttc
      121 gaggccgacg gccaacccag ccagtacacg aagaactgca tcgaattctg caacaacttc
      181 gaaatcgagc ggcagcggac ggcgagcttc gtgcagctcc tgaaggacct cgacctgttc
      241 gaaaccaaga ccgccaactt cacccccacc ggcccggacg gcgccctggg cgagccccag
      301 aagatcgcgg agtacttcgg ggtctccgag gagaagctca acaaactgcc ggccgagaag
      361 ttcatcgagc tgcgcgataa cggcgcgctg ccgcagatct acgcccacct gcactcgctg
      421 ctctgctggg accgcctggt ggcgctcgcc ctggtgcggc agcaaaccca gcagccggtc
      481 gcggcgaaca gctaaggccg gctcttattt ggtcgcgctt ccggacggcg aacccaacgg
      541 ctcgcctgca aagcgcttag cgcgcgaaga cgctccgcgt caggcacgag aagaccaggc
      601 ggcccgcctc gtccaggagg tcgtgctggg cgatgatgat gcccttgccg tcgcccaccg
      661 ggtccttggc catgatggtc atgcgcccgc gcagcagttc gccagccggc ggattgcgca
      721 cccagcgcag cgcgtcgacc cccaggcgct tggtctgcgg ccaatcggtg tgggagatgg
      781 cgtccagctt ggcccagatc gcatagacca tggcgtccgg cgccccgcgc tccaccgccc
      841 aaccgggggt gaaggccgtg gcgaaggcca gcaaggcctc gggctccacc gcggccgcgc
      901 ccagcgacac cacctgaccg atctcgatgt cgtcgaagga agctggcacg ggcgggtcct
      961 caagggattc tggaaagccg gattggcgat gatgaccgtg cgctgcggct caagtcgagc
     1021 gccgctttgc gcaagccgcc aagccgggcc atatacgccc gccatattgc ttgtgatcgg
     1081 gcggggcgta acgaggcgat gatgcggttc ctggcaggcg tgatcctggc gctgatgatg
     1141 gcgcttccgg cggcggccca ggtccccggc gcaagccgcc atgtggccgt tgagctggtg
     1201 gccgaccatc aggggatcgc gcctggtgag accatccacg tggcgctccg ccagcagatc
     1261 gagaagcact ggcacaccta ttggcgcaat tccggcgata gcggcgagcc cacgcgcatc
     1321 agatggaccc tgccggccgg ctggcgggcg ggcgagttca cctgggccac gccgcagcgt
     1381 atcgcggttg gcccgctgat gaactacggc tacgagggcg aagtcctgtt gccgatgacg
     1441 ctgaccgcgc cggcgaacgc caagccgggc gacaaggtca tcctgaacgc cgcggtctcc
     1501 ctgctggtct gcgccgaggt ctgtgtgccg gaggacgatg cgctcaacat cactctgccg
     1561 gtgacgcccg cgtccgcgcc gcttgacccc aaatggggtg cgccgatcgc gactgctctg
     1621 accgccgcgc cgaaaccggc cggtctggcc gccgtcttcc agccgcgtgg gccaggcgtg
     1681 gcgctcgcca tcaccggcgc ggcgctgaag ggcgcgaccc tctccggcgc ctatttctat
     1741 cccttcgag
//
LOCUS       DATAJL010000783         2789 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71210,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000783 DATAJL010000000
VERSION     DATAJL010000783.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71210"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            210..1601
                     /locus_tag="VHN39_14925"
     CDS             210..1601
                     /locus_tag="VHN39_14925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEX2817686.1"
                     /translation="MHLDALLLSRLQFAFTIAFHIIFPSFTIGLASFLAVLEGLWLAT
                     KNEAFKVLYLFWVKIFAISFGMGVVTGVVMSYEIGTNWSVFSVAAAPVIGPLLAFEVL
                     TAFFLEASFLGVMLFGWRKVGPRLHFTATALVAIGTAVSAFWIISANSWMQHPTGYVR
                     LASGALRATDWGQVIVSPTFPVRLVHMLLAAYLTTSLVVGAASAWRLLKDTDEEESCL
                     ALKMAIGMFAIVAPLQLLAGDMSGKQVLQFQPAKLAAIEAFWDTKSGQAFHIAAWPDR
                     DTASNRWELSIPKLGSLITAGNARAEITGLKAFALADRPPVFLVFWAFRVMVGLGVAM
                     IGLGLWGGFQVWRGRLAHARWFLRAAVAMGPAGFVAVVAGWIVAEVGRQPWVIYGVLR
                     TADAVSPVTQGEVSVSLLAFMIIYAVIFSVGVLYILRLMGEGPLSGSGAPLGVRPPGY
                     ALGAAPGDPEART"
     gene            1598..2623
                     /gene="cydB"
                     /locus_tag="VHN39_14930"
     CDS             1598..2623
                     /gene="cydB"
                     /locus_tag="VHN39_14930"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEX2817687.1"
                     /translation="MSLDLPLIWGAIIAVAVLLYVMLDGFDLGIGILFPFAGSPAERD
                     VMMSTVAPVWDGNETWLVLGGGGLFAAFPFAYAALMPALYIPILMMLLALILRGVAFE
                     FRLRARARGKQFWTIAFATGSIVATLAQGLVLGGFIQGVTLKDGRFAGDPLDWLSPYS
                     LLIAVGLVAGYALIGACWLIWRTEDELHGRARRWAWIALPAAAVLLAAASAATLLVHP
                     EIAARWGWNGDGFDLARLARLSPIPLLGAVGFGLAALGLKRRAHGWPFAGAILMFLSG
                     YLGLAAGFVPYIVPYGMDFRQAANADNALALMLVGVAILLPAIIGYSIWVYWIFRGKV
                     GVDAGYH"
     gene            2607..2753
                     /locus_tag="VHN39_14935"
     CDS             2607..2753
                     /locus_tag="VHN39_14935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817688.1"
                     /translation="MRAIIEPPPEPGEPLGPLWKRLGWFFGLAAGAAFATAAVAYALR
                     ALLR"
BASE COUNT          334 a          965 c          960 g          530 t
ORIGIN      
        1 gccccgcgga cgggattttc tggcatggag cggcctccga cgaatgagtt acctaggaaa
       61 tccgtgaggc cctgcggggg ttccggtcaa gctcggcctt gagctcacaa acaccgcgac
      121 cgtctgtcgc atgaccgaaa agctttgctg tgcgttgtag ataatgggag ccgcccgtcc
      181 gcgatccgcg ggcgagcgca ggattggcca tgcacctcga cgccctgttg ttgtcgcgcc
      241 tgcaattcgc cttcacgatc gcattccaca tcatctttcc gagcttcacg atcgggctgg
      301 cgagcttcct ggcggtgctg gagggcctgt ggctcgccac gaagaacgag gcgttcaagg
      361 tcctctacct cttctgggtc aagatcttcg ccatctcctt cggcatgggc gtcgtgaccg
      421 gcgtggtcat gtcctacgag atcggcacaa actggagtgt cttctccgtg gcggccgcgc
      481 cggtgatcgg accgctgctg gccttcgagg tgctgaccgc tttcttcctg gaggcgagct
      541 tcctgggcgt catgctgttc ggctggagga aggtcggacc gcgcctgcac ttcaccgcca
      601 ccgccctggt ggcgatcggc acggcggtgt cggccttctg gatcatctcg gccaacagct
      661 ggatgcagca tccgacgggc tatgtccgcc tggccagcgg cgcgctgcgc gccaccgact
      721 ggggacaggt gatcgtctcc cccaccttcc cggtgcggtt ggttcacatg ctgctggcgg
      781 cgtacctcac cacctcgctg gtggtgggcg ccgcctcggc ctggcggctg ctgaaggaca
      841 ccgatgagga ggaaagctgc ctagcgctga agatggctat cggcatgttc gccatcgtcg
      901 cccctctgca gctgctggcc ggcgacatgt cgggcaagca ggttctccaa ttccagcccg
      961 ccaagctggc cgccatcgag gccttctggg acaccaaatc ggggcaggct ttccacatcg
     1021 ccgcctggcc cgatcgcgac acggcgtcga accgctggga gctatcgatc cccaagctgg
     1081 gcagcctgat caccgccgga aacgcccgcg ctgagatcac ggggctgaag gccttcgcac
     1141 tcgccgaccg gccgccggtg tttctggtct tctgggcgtt tcgggtgatg gtcggcctgg
     1201 gcgtggcgat gatcggcctt gggctgtggg gcggcttcca ggtctggcgc ggccggctgg
     1261 cccacgccag gtggttcctg cgggccgccg tggccatggg gccggccggg ttcgtggccg
     1321 tggtggccgg gtggatcgtg gccgaggtcg gccgccagcc ctgggtcatc tacggggtgc
     1381 tgaggaccgc cgacgccgtc tcgccggtga cgcagggcga ggtctcggtc tcgctcctcg
     1441 ccttcatgat catctacgcg gtgatcttca gcgtcggcgt cctctacatc ctgcggctga
     1501 tgggcgaggg acccttgtcc gggtccggag cgcccttggg cgtgcggccg cccggctacg
     1561 cgctcggcgc cgcgcccggc gacccggagg cccggacatg agtctcgacc tgccgctgat
     1621 ctggggcgcg atcatcgccg tcgccgtcct gctctatgtg atgctcgacg gcttcgacct
     1681 cggcatcggc atcctctttc ccttcgcggg gtcgccggcc gagcgcgacg tgatgatgtc
     1741 caccgtggcg cccgtctggg acggcaacga gacctggctg gtgctgggcg gcggcgggct
     1801 cttcgcggcc ttccccttcg cctacgcagc cctgatgccg gcgctctaca tccccatcct
     1861 gatgatgctt ctggcgctga tcctgcgcgg ggtcgccttc gagttccgcc tgcgggcgcg
     1921 agcgcgcggc aagcagttct ggacgatcgc cttcgccacc ggctccatcg tcgccaccct
     1981 ggcccagggc ctggtgctcg gcggcttcat ccagggcgtg accctgaagg acggccgctt
     2041 cgccggcgac cccctcgact ggctgagccc ctacagtctg ctgatcgcgg tcggcctggt
     2101 cgcgggctac gcgctgatcg gcgcctgctg gctgatctgg cggaccgagg acgagctgca
     2161 cggccgcgcg cgccgctggg cctggatcgc gctgccggcg gccgccgtgc tgctggccgc
     2221 ggcgagcgcg gccacccttc tggtccatcc cgaaatcgcc gcgcgatggg gctggaacgg
     2281 cgacggattc gacctcgcgc ggctggcccg cctgtcgccg atccccttgc tgggcgcggt
     2341 gggcttcggc ctcgcggccc tgggcctgaa gcgccgcgca cacggctggc cgttcgcggg
     2401 cgcgatcctg atgttcctct ccggctatct cggtctggca gccggtttcg tcccgtacat
     2461 cgtcccctac ggcatggatt tccggcaggc ggccaacgcc gacaatgcgc tggccctgat
     2521 gctggtgggc gtggcgatcc tgctgccggc gatcatcggc tacagcatct gggtctactg
     2581 gatcttccgc ggcaaggtcg gcgtcgatgc gggctatcat tgagccgccg ccggagccgg
     2641 gcgagccgct cggcccgctc tggaagcggc tcggctggtt cttcggcctg gccgcgggcg
     2701 cggcgttcgc gaccgcggcg gtggcttacg ccttgagggc gctgctccgc tgacctaaca
     2761 ccgcgccatg gccacgccgc tctgccgcc
//
LOCUS       DATAJL010000784         1554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97380,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000784 DATAJL010000000
VERSION     DATAJL010000784.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97380"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..670)
                     /locus_tag="VHN39_14940"
     CDS             complement(<1..670)
                     /locus_tag="VHN39_14940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX2817689.1"
                     /translation="MAHVSDLIAEDIEAYLHAHQHKSLLRFLTCGSVDDGKSTLIGRL
                     LYDSKMIFEDQLAALEADSKKVGTQGGEIDFALLVDGLAAEREQGITIDVAYRFFSTD
                     KRKFIVADTPGHEQYTRNMVTGASTADAAVILIDARKGVLTQTRRHSYLVSLLGIRHV
                     VLAINKMDLVDWSQARFDEIVADYRTFAEKIGIKAFTAIPMSALRGENITEPSAQSPW
                     YAGPP"
     gene            complement(670..>1554)
                     /gene="cysD"
                     /locus_tag="VHN39_14945"
     CDS             complement(670..>1554)
                     /gene="cysD"
                     /locus_tag="VHN39_14945"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA];
                     GO_process: GO:0019419 - sulfate reduction [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HEX2817690.1"
                     /translation="HLQRLEAESIQIFREVVAECERPVMLYSIGKDSAVMLRLAMKAF
                     YPAKPPFPLLHVDTTWKFRAMYEMRERMARESGMELIVHKNPEAEARGINPFDHGSLH
                     TDMWKTEGLKQAIDKYGFDAAFGGGRRDEEKSRAKERILSFRSAQHRWDPKIQRPELW
                     RLYNTRKGPGETFRAFPISNWTELDIWQYIYLEDIPIVPLYFAGERPVVERDGNLIMV
                     DDDRMRLNPGEVPQMRSIRFRTQGDYPLTGAIESTAATLPEIIQEMLLATTSERQGRV
                     IDHDQAASMEKKKQEGYF"
BASE COUNT          238 a          478 c          532 g          306 t
ORIGIN      
        1 gcggcgggcc tgcgtaccag ggcgactgcg cgctgggttc ggtgatgttc tcgcccctga
       61 gcgccgacat cggaatggcg gtgaaggcct tgatgccgat cttctcggcg aaggtgcgat
      121 aatcggcgac gatctcgtcg aagcgcgcct gggaccagtc caccaggtcc atcttgttga
      181 tcgccagcac cacatgacgg atgccgagca ggctcacgag gtaggagtgc cgccgggtct
      241 gcgtcaggac gcccttcctg gcgtcgatga ggatcactgc ggcgtcggcg gtggaggccc
      301 cggtgaccat gttgcgggtg tactgctcgt ggcccggggt gtcggcgacg atgaacttgc
      361 gcttgtcggt ggagaagaag cggtaggcga cgtctatggt tatgccttgc tcccgctcgg
      421 cggccaggcc atcgaccagc agcgcgaaat cgatctcgcc gccttgggtg ccgacctttt
      481 tcgaatccgc ctccagcgcg gccaactggt cctcgaagat catcttggag tcgtagagca
      541 ggcgcccgat cagggtcgac ttgccgtcgt ccaccgagcc gcaggtcagg aaccgcagca
      601 ggctcttgtg ctggtgggcg tggagatagg cctcaatgtc ctcggcgata aggtcggaga
      661 cgtgagccac tagaagtagc cctcctgctt cttcttctcc atcgaggcgg cctggtcgtg
      721 gtcgatgacc cggccctggc gttcgctggt ggtcgccagc agcatctcct ggatgatctc
      781 gggaagcgtc gccgccgtgc tctctatggc gccggtcaac ggatagtcgc cctgagtgcg
      841 gaagcggatc gagcgcatct gcgggacttc gccggggttg agccgcatcc ggtcgtcgtc
      901 gaccatgatc aggttgccgt cgcgctccac caccggccgt tcgccggcga agtagagcgg
      961 cacgatcggg atgtcctcca ggtagatgta ttgccagatg tcaagctcgg tccagttgga
     1021 gatcgggaag gcgcggaagg tctctccagg gcctttgcgg gtgttgtaga gccgccagag
     1081 ttcgggccgc tggatcttcg ggtcccagcg gtgctgggcc gagcggaagc tgaggatgcg
     1141 ttctttggcg cgggacttct cctcgtcgcg ccgcccgccg ccgaaggccg catcgaagcc
     1201 gtacttgtcg atggcctgct tcagcccctc ggtcttccac atgtcggtgt gcagcgagcc
     1261 gtggtcgaag gggttgatgc cccgcgcctc ggcctcggga ttcttgtgga cgatcagctc
     1321 catgccgctc tcgcgggcca tccgctcgcg catctcgtac atggcccgga acttccaggt
     1381 cgtatccacg tgcagcagcg ggaagggcgg cttggccggg tagaaggcct tcatggccag
     1441 ccgcagcatc accgcggagt ccttgccgat ggaatagagc atcaccgggc gctcgcactc
     1501 ggcgaccact tcgcggaaga tctggatgct ctcggcctcc aggcgctgca gatg
//
LOCUS       DATAJL010000785         3979 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71309,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000785 DATAJL010000000
VERSION     DATAJL010000785.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3979
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71309"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            149..1564
                     /locus_tag="VHN39_14950"
     CDS             149..1564
                     /locus_tag="VHN39_14950"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX2817691.1"
                     /translation="MRTLDRIYIDGQFVTPHGEELFDLFNPATEERIGQVRLGDAEDA
                     RAAVAAAKRAFPAFSRTSKAERIAMLHRLHDAVAPHAEALATAMVEEYGAPAYFVDFS
                     ARRSASVFLDMAKTLEDFDFSQTIGRAEVTLQPLGVVAAITPWNSNYGFICGKLAGAI
                     AAGCTVVVKPSEMSATQTDVLMQALHEASLPPGVFNIVNGRGDVVGAELSSHPDVAKV
                     TFTGSTAVGRTILRAASETMKRVTLELGGKGPNIILEDADLETAIPTAAMMGFGNSGQ
                     ACVAGTRILAPKSRLPEILERLKTTVAALKVGETTDPSVMIGPMVSRKQWDRVQGYIR
                     LGREEGAQLLIGGEGRPEGLDRGWFVRPTVFVGVTNDMRIAREEIFGPVLSVIPYEDE
                     DEAITIANDTTYGLQAYVASSDLDHARAVADRLESGRVVINGAPHEPLAPFGGFKQSG
                     IGREYGRFGLEAYLEPRAVLA"
     gene            1965..2909
                     /gene="rpoH"
                     /locus_tag="VHN39_14955"
     CDS             1965..2909
                     /gene="rpoH"
                     /locus_tag="VHN39_14955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HEX2817692.1"
                     /translation="MQAAVALSTEQGLGQYLRQIREMAMLQQEDEYMLARRWQEHQDP
                     DAAQQLVTSHLRLVAKIAMGYRGYGLPISDLISEGNIGLMQAVRRFDPDRGFRLATYA
                     MWWIRSTIQEFVIRSWSLVRMGTTGAQKKLFFGLRRAKQAIAALEEGNLTPEHAEAIA
                     TRLGVSTNEVQEMNQRMAGDNSLNAPMQTVDAGSGEWQDQLEDSAATPEAELIEAQET
                     DVRRQALTAALTMLNLRERQVFEARHLRDEPATYGELAEVHGVSRERVRQIEAQAFAK
                     VQSAVLGRPVRADNPPRTDIRRRATRANPMAQPMLQAA"
     gene            2925..3059
                     /locus_tag="VHN39_14960"
     CDS             2925..3059
                     /locus_tag="VHN39_14960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817693.1"
                     /translation="MRLADTIRFDESIKLAGIPEGRMFKLAKLSFTGVTAYLTAYARK
                     "
     gene            complement(3081..>3979)
                     /locus_tag="VHN39_14965"
     CDS             complement(3081..>3979)
                     /locus_tag="VHN39_14965"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidyl-alpha-hydroxyglycine alpha-amidating
                     lyase family protein"
                     /protein_id="HEX2817694.1"
                     /translation="PWGRLPPGWTLGDVGGVAADAADNVFVFNRGPRPMIVFDRDGEV
                     LSHWGEGIFTRPHGVDIGPDGSVYCTDDGDHTVRKCTPDGRVLLEIGLPGAPAPAMSG
                     RPFNRCTHTALSPAGEIYVSDGYANARVHKFTAQGELMFSWGSPGAGPGQFNLPHNIC
                     TDEDGRVIVADRENDRIQVFDSFGRLLDIWDGVRRPCAMCRDPTGGGVYVGELGSGDA
                     QAGGAPPRVSLLGAQGQPMARLGDRTADNPFVAPHGIAVDSRGDLYLGEVAYRAWALT
                     HPQTAPPPQLTTLSKLVRRRPT"
BASE COUNT          684 a         1386 c         1294 g          615 t
ORIGIN      
        1 tgcgcgccac cgccaccacc gcttcgagct cgatctggct ggctctcatt gcgctatttt
       61 ctttatcagt ctgtgtcgat ttgatcggct tatcagatca tctgcgcgag gtcacctttc
      121 cggacatcgg acaaggcagg agacccctat gcgcaccctc gacaggatct acatcgacgg
      181 ccagttcgtc accccgcacg gcgaagagct gttcgacctt ttcaaccccg ccaccgagga
      241 acggatcggc caggtccgcc tgggcgatgc ggaggacgcc cgggcggcgg tcgcagcggc
      301 gaagcgtgcc ttccccgcct tctcgcgcac cagcaaggca gagcggattg cgatgctgca
      361 tcgcctgcac gacgcggtcg ccccgcacgc cgaggcgttg gccacggcca tggtcgagga
      421 atatggcgcg ccggcctatt tcgtggactt ctccgcgcgg cgttcggcga gcgtcttcct
      481 cgacatggcc aagacgctgg aggacttcga cttcagccag accattggcc gggccgaggt
      541 caccctgcag cccttgggcg tggtggccgc gatcacgccc tggaacagca actacggctt
      601 catctgcggc aagctcgccg gcgccatcgc cgccggctgc accgttgtcg tcaaacccag
      661 cgagatgagc gccacccaga ccgacgtcct gatgcaggcc ctgcacgagg ccagcctgcc
      721 accgggggtc ttcaacatcg tcaacggccg cggcgacgtc gtcggcgccg aactcagctc
      781 acatcccgac gtcgccaagg tgaccttcac cggctcgacc gcggtgggcc gcacgatcct
      841 gcgcgccgcc tcggagacca tgaagcgggt gaccctggag ctgggcggca agggcccgaa
      901 catcatactg gaggacgccg atctggagac cgcgatccca accgcggcga tgatggggtt
      961 cggcaacagc ggccaggcct gcgtggcggg cacgcggatc ctggcgccga aatcgcggct
     1021 gccggagatc ctggagcggt tgaagaccac ggtcgcggcc ttaaaggtcg gcgagaccac
     1081 cgatccgtcg gtcatgatcg gcccaatggt cagccgcaag cagtgggatc gtgtgcaggg
     1141 ctacatccgc ctgggccggg aggaaggcgc ccaactgctg atcggcggcg agggccgacc
     1201 ggaggggttg gatcgcggct ggttcgtgcg gccgacggtc tttgtcggcg tcaccaacga
     1261 catgcgcatc gcccgcgaag agatcttcgg cccggtgctc agcgtcatcc cctatgagga
     1321 cgaggacgag gcgatcacca tcgcgaacga tacgacctac ggcctgcagg cctatgtggc
     1381 gagctccgac ctggaccacg cccgcgccgt ggccgatcgg ctggaaagcg gccgggtggt
     1441 gatcaacggc gcgccgcacg agccgctcgc gcccttcggt ggcttcaagc agtccggcat
     1501 cggccgcgag tacggccggt tcgggctgga ggcctacctg gaaccccgcg cggtccttgc
     1561 gtgaacccga agcagcgggc ccaaggcgga tcccttgggc ccggtcggtt caaaccctgg
     1621 gcttcttccc ggtcgacctc gggctcctca aggtgggcgg cgtgcaaaca accccgctgg
     1681 gcccgctgtc gatgatcaac ttcgccaagg tctgatccgc acggccagcc agaccgagcg
     1741 ataaagcccg agtccaacga aggtgcccca cggcgctcgg gcgcctttga cgtcttccat
     1801 gtggcccttc agccgcccgt cattcgaggg caagccccca ggctttggct aacttttgga
     1861 aacgatatat ttcataagtt tctatttttg atccgatgaa gggccggtag cttcctcctt
     1921 gcgcaaagac aaccgccgcg caaaccggag gaaggaaccc agtcatgcaa gccgccgtcg
     1981 cgctctcgac cgaacaaggt ctcggccagt atctgcgtca gatccgtgaa atggccatgc
     2041 tgcagcaaga agacgaatac atgctggcgc ggcggtggca ggaacaccag gaccccgacg
     2101 ccgcccagca actggtcacc tcgcacctgc ggctcgtggc caagatcgcc atgggctacc
     2161 gcggctacgg cctgccgatc tccgacctca tctcggaagg caacatcggt ctaatgcagg
     2221 cggtgcgccg cttcgatccc gaccgtggct tccgtctggc cacctacgcg atgtggtgga
     2281 tccgctcgac catccaggaa ttcgtgatcc gctcgtggtc cctggtgcgg atggggacca
     2341 ccggcgccca gaagaagctg ttcttcggac tgcgccgcgc caagcaggcg atcgcagcct
     2401 tggaagaggg caacctcacc cccgaacatg ccgaagccat cgccacccgc ctgggcgtct
     2461 cgacgaacga agtccaggag atgaaccagc gcatggcagg cgacaactct ctcaacgccc
     2521 cgatgcagac ggtcgatgcc ggcagcggcg agtggcagga ccagctggaa gacagcgccg
     2581 ccacgcccga ggccgagctg atcgaggccc aggagaccga tgtccgccgc caggccctga
     2641 ccgccgccct gaccatgctc aatcttcggg agcggcaggt cttcgaggcc cgccatctgc
     2701 gcgatgaacc ggccacctac ggcgaactgg ccgaggtcca cggcgtctcc cgcgagcggg
     2761 tgcgccagat cgaggcgcag gcgttcgcca aggtgcagtc cgccgtcctg ggtcgccccg
     2821 tgcgggccga caacccgccg cgcaccgaca tccgtcgccg cgccacccgc gccaacccca
     2881 tggcgcaacc catgttgcag gcggcctagt ccaggggccg atccatgaga ctcgcagaca
     2941 ccattcggtt cgacgagtcg ataaagctgg cggggatccc tgagggccgc atgttcaagt
     3001 tggccaagct ctccttcacc ggcgtcacag cctacctgac ggcttacgcc cggaagtagc
     3061 taccctgaac gccgtgcgac tcaggtcggt cgccgccgca ccagcttgga cagggtcgtc
     3121 agctgcggag gcggcgcggt ctgcgggtgg gtcaaagccc acgcgcggta agcaacctcg
     3181 cccaggtaga ggtcgccgcg gctgtcgacg gcgatcccgt ggggcgccac aaagggattg
     3241 tcggccgttc ggtcgccgag gcgcgccatc ggctggccct gcgcgcccag gaggctgacg
     3301 cgcggcggcg ccccgcccgc ctgggcgtca ccggacccca actccccgac gtagacgccg
     3361 cctccggtgg gatcgcggca catcgcgcac gggcgccgca caccgtccca aatgtcgaga
     3421 agccgaccga agctatcgaa gacctggatg cggtcgtttt cccgatcggc gacgatgacg
     3481 cggccgtcct catcggtgca gatgttgtgc ggcaggttga actgtcccgg gccggcgccc
     3541 ggcgagcccc agctgaacat gagctcgccc tgcgccgtga acttgtggac ccgggcgttg
     3601 gcgtagccgt ccgatacata gatctcgccc gccggggaca aggcggtgtg ggtgcagcga
     3661 ttgaacggcc gcccgctcat cgccggcgcc ggcgcgcccg gcagtccgat ctccagcagc
     3721 acccggccgt cgggcgtgca tttccgcacc gtgtggtcgc cgtcgtcggt gcagtagacg
     3781 ctgccatccg gtccgatgtc gacgccgtgg ggtcgcgtga agatcccttc cccccagtgg
     3841 gacaggacct cgccgtcccg gtcgaagacg atcatcggtc ggggcccgcg gttgaacacg
     3901 aagacattgt cggcggcgtc cgcagccacg ccgccgacat ccccgagcgt ccatccgggc
     3961 ggcaggcgcc cccacgggg
//
LOCUS       DATAJL010000786         4342 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71318,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000786 DATAJL010000000
VERSION     DATAJL010000786.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4342)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4342)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4342
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71318"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            270..950
                     /locus_tag="VHN39_14970"
     CDS             270..950
                     /locus_tag="VHN39_14970"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817695.1"
                     /translation="MDHPLDRPIWSALAIRQAGLSQGDARALRYAPDYGVFAAAADRS
                     DASLAALAALVPEDGQVALVEAQTPAAVPGTAIASTAVVWQMVAPSITAAPEPGFAIV
                     DLTEGDAPQMLALATQTRPGPFFSRTHQLGDFVGVKQGGRLLAMAGERMKPEGYTEVS
                     GVCTDPGQRGRGYAGALMQVVANRILARGEMPFLHSYAHNTGAIALYQALGFALRSEM
                     TMQVLARA"
     gene            complement(967..1599)
                     /locus_tag="VHN39_14975"
     CDS             complement(967..1599)
                     /locus_tag="VHN39_14975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817696.1"
                     /translation="MAFRSFPLGVFLIAAILAGPALAAPKRHVAVTTAPAPSAEATTV
                     DELSVQPTAKCLEPLKDPRAPPPRIVSTFPARGAVVRPGVLVVRVTFDQPMSCKGFFA
                     PAIEMRTPCPEETQYWVLSFDRRTIRTTCRTEVNSHYGLRLSDRSLSGDSKTTFVSLA
                     GQRAPPYVLTFDTSAEAPITTAGESLAEDPEMREPQKDVPLKLQGDYVKR"
     gene            complement(1646..2248)
                     /locus_tag="VHN39_14980"
     CDS             complement(1646..2248)
                     /locus_tag="VHN39_14980"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEX2817697.1"
                     /translation="MISQPLKLGFLASGNGSSARVILGAIQAGELEAEVRLMVSNNRS
                     AAALAFAVEAGVPALCIATQADPRAADAELAEAMAAHGVEVIVLSGYLRQLGPKALAR
                     YAGRILNIHPGPLPAFGGHGMYGRRVHEAVIAAGAAESGICIHLVDEEYDRGPVIARR
                     VVAVAQGDTAETLEARLTALEPQFYLETLQRLARGALSLP"
     gene            complement(2245..3084)
                     /locus_tag="VHN39_14985"
     CDS             complement(2245..3084)
                     /locus_tag="VHN39_14985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2817698.1"
                     /translation="MTAILELTILGCGSSGGVPRADGDWGACDPASPRNLRSRCSLLV
                     RRQNTEGKGEGAEQETTAIVDTSPDLRLQTAQAGAKRLDAILLTHDHADQVHGIDDVR
                     AFFIRQRAKIACHMDAATDASMMRRFGYIFEPEGGYPAICTREPIPAHGVRWQVDGPS
                     GAIPIVTFDQDHGGVRSVGYRFGDVAYSSDVVNLDEAAFAALAGLDVWIVDALRYRPH
                     PTHSHLERTLAWIARLKPRRAILTNLHIDLDYETLSAELPAGVEVAFDGLRFQHELSG
                     SFT"
     gene            complement(3081..3857)
                     /locus_tag="VHN39_14990"
     CDS             complement(3081..3857)
                     /locus_tag="VHN39_14990"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX2817699.1"
                     /translation="MLIDSHVNLHAPQFDPDREAVIDRAFAAGVGLMVEICDKVSNFE
                     AVRRVAEHPDIWCTVGAHPHEAKEDPGLSTARLVELAADPRVVGIGETGLDFHYDLSP
                     RDIQAQVFRAQVAAARETGLPLVVHAREADEVMAAILEDEYARGPFRILMHCYTSGAE
                     LARRAAALGAWFSVSGIATFKAAEDVRAVIRDMPGERIIVETDCPYLAPVPYRGRRNE
                     PAYLPHVLAKLAEIRGWSLAEAEARTEDAFFAVFDRIPRP"
     gene            complement(3866..>4342)
                     /locus_tag="VHN39_14995"
     CDS             complement(3866..>4342)
                     /locus_tag="VHN39_14995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEX2817700.1"
                     /translation="RCRRLAFPPLSLEETAAFVRDREDVSVEDSLRLAKMSGGAPGRA
                     WALAGAKALDMDDAARALIEELPRVDEAMALSLADRFRGAEGRAQFNLLFDRLAERVH
                     GFATDRAGQGIGGLDRWAQVWETLEQLSRDVEALNLDRADALFTALGELRQAARAA"
BASE COUNT          683 a         1542 c         1469 g          648 t
ORIGIN      
        1 tctcgacagc cgactgcaac cgggcggcca gttcgttcac ctcgcggacg ccgagggttt
       61 tgaccgcctt gctctgcagt tcggggccga tggtgacgct gacggaggcg ggcgcggcga
      121 gcgcggcggt ggcgctggcc agcagggccg ccgcggcaat ggctagggtt cgcatggtca
      181 tctccaagtt gtccccgtcc cacctaaggt aggccgatcg gcgcccgccg caactgtcgt
      241 ggccatcgga atcgccacag aagcatccca tggaccaccc gctcgaccgt ccgatctgga
      301 gcgcgctcgc catccgccag gcagggctgt cgcagggcga cgcccgcgca ctgcgatatg
      361 cgccagacta cggcgtcttc gccgcggccg ccgaccgttc ggacgcgagc cttgcggccc
      421 tggcggcgct cgtgccggaa gacgggcagg tggcgctggt cgaggcccag acgccggccg
      481 cggtccccgg gacggcgatc gcctccaccg ccgtcgtctg gcagatggtc gccccgtcga
      541 tcaccgccgc cccggaaccc ggcttcgcca tcgtggacct gaccgagggc gacgctccgc
      601 agatgttggc gctggcgacc cagacgcggc caggcccctt cttcagtcgc acgcatcagt
      661 tgggcgactt cgtgggcgtg aagcagggag gacgcctcct ggccatggcc ggcgagcgca
      721 tgaagccgga aggctacacc gaggtcagcg gcgtctgcac cgaccccggg cagcgcgggc
      781 gcggctatgc cggcgcgctg atgcaagtgg tggccaaccg gatcctggca cgaggcgaga
      841 tgccgttcct gcattcctac gcccacaaca ccggagcgat cgcgctctac caggccctgg
      901 gcttcgccct gcgcagcgaa atgaccatgc aggtgctggc ccgcgcctag gcgcaaccac
      961 gcgccgctag cgcttgacgt aatcgccttg gagcttcagc ggcacgtcct tttgcggctc
     1021 gcgcatctcc gggtcctcag ccagggactc cccagccgtc gtgatcggcg cctcggctga
     1081 ggtgtcgaag gtgaggacgt aaggcggggc gcgctggccg gccaggctca cgaaggttgt
     1141 cttgctgtcg ccactcaggg agcggtcgct gagccgcagt ccgtagtggc tgttcacttc
     1201 ggtgcggcag gtcgtgcgga tggtccgccg gtcgaaactc agcacccagt actgggtttc
     1261 ctcgggacag ggggttcgca tctcgatcgc gggggcgaag aaccccttgc agctcatcgg
     1321 ctggtcgaag gtgacccgca cgaccagcac accagggcga accacggcgc cgcgcgccgg
     1381 aaaggtgctg acaatccgcg gcggcggggc ccgtgggtcc ttcaaaggct ccaggcactt
     1441 ggccgtgggc tgaacggaga gttcgtcaac ggtggtggct tccgcggacg gcgcgggcgc
     1501 cgtggtgacc gcaacatgac gtttcggggc cgcgagcgca ggcccggcca ggatcgctgc
     1561 gatgaggaat actccgagag ggaagctccg aaacgccata tccatttctc gcctaaggaa
     1621 gattatcgga aataatgcga caccctcaag ggagagataa tgccccccgg gccaatcgct
     1681 gcaaggtctc caggtagaac tgcggctcca gggccgtaag gcgggcctcc agcgtttccg
     1741 ccgtgtcccc ctgcgccaca gccacgacgc gccgcgcgat caccggaccg cggtcgtatt
     1801 cctcgtccac cagatggatg cagatgccgc tctcggccgc tccggcggcg atcaccgcct
     1861 cgtggacacg ccggccatac atcccgtggc caccgaacgc cggcagcggt cccgggtgaa
     1921 tgttcaggat cctgccggcg tagcgcgcca gggccttcgg cccgagctgg cgtaagtagc
     1981 ccgacaggac aatgacttcc acgccatggg ccgccatcgc ctcggccagt tccgcatcgg
     2041 cggcccgcgg atcggcctgg gtcgcgatgc agagcgcggg cacaccggcc tccaccgcga
     2101 aggccagcgc ggcggcgctt ctgttgttgc tcaccatcag ccggacttcc gcctccagtt
     2161 cgccggcctg gatcgcgccc aagatgacgc gcgcgctgga gccgtttccg gacgcgagga
     2221 agccgagctt aagaggctgt gaaatcacgt gaaactgcca ctgagttcat gttgaaaccg
     2281 cagaccgtcg aaggccacct cgacgccggc cggcagctcg gcgctcaacg tttcgtagtc
     2341 caggtcgatg tgcaggttcg tcaatatcgc ccggcggggt ttcagccgcg cgatccacgc
     2401 cagcgtccgc tccaggtgcg aatgcgtcgg atgcggccgg tagcgcaggg cgtccacgat
     2461 ccagacgtcc agccccgcca aggccgcgaa cgccgcctcg tccaggttca ccacatcgct
     2521 ggaataggcc acgtcgccaa accgatagcc caccgagcgc accccgccgt ggtcctggtc
     2581 gaaggtgacg atgggaatgg cccctgacgg cccatccacc tgccagcgca cgccatgcgc
     2641 cgggatcggc tcgcgcgtgc agatcgccgg ataaccgccc tcgggttcga agatgtagcc
     2701 gaaccgccgc atcatcgagg cgtcggtcgc tgcatccatg tggcaggcga tcttcgcgcg
     2761 ctgacgaatg aagaaggccc gcacatcgtc gatgccgtgc acttggtcgg cgtggtcgtg
     2821 ggtgagcagg atcgcgtcca gccgcttcgc gcccgcctgg gcggtctgta gccgcagatc
     2881 cggcgaggtg tcgacgatgg ccgtggtctc ttgctcagcg ccctccccct tcccctcagt
     2941 attttggcgc cggacgagga gggaacagcg cgagcgcagg ttcctgggac tggccgggtc
     3001 gcaggcgccc cagtccccat ccgcccgcgg cacgccgccg gacgagccgc agcccaggat
     3061 cgtgagctcc agaatcgccg tcatggtcgc ggaatccggt cgaacaccgc gaagaaggcg
     3121 tcctcggtcc tggcttcggc ctccgccagc gaccagccgc ggatctcggc caatttcgcc
     3181 agcacgtgcg gcagataggc cggctcgttg cggcgcccgc gatagggcac gggcgccagg
     3241 tacgggcagt cggtttccac gatgatccgc tcgcccggca tgtcgcggat caccgcgcgg
     3301 acgtcctccg ccgccttgaa ggtcgcgatc ccggagaccg agaaccaggc gcccagcgcc
     3361 gcggcccgcc gggccagctc cgcgcccgag gtgtagcagt gcatcaggat gcggaaaggg
     3421 cctcgcgcat attcgtcctc caggatcgcg gccatcacct cgtcggcctc gcgggcgtgg
     3481 accaccagcg gcagaccggt ctcgcgcgcc gccgccacct gggcgcgaaa cacctgggcc
     3541 tggatgtcgc gcgggctgag gtcgtagtgg aaatcgaggc ctgtctcgcc gatgcccacg
     3601 acccgcgggt ccgccgccag ctcgacgagc cgcgccgtcg agagacccgg atcctccttg
     3661 gcctcgtgcg gatgcgcgcc caccgtgcac cagatgtccg gatgctcggc gacccggcgc
     3721 accgcctcga agttcgagac cttgtcgcaa atttccacca tcaagcccac gcccgccgcg
     3781 aaggcgcggt cgatcaccgc ctcgcggtcc gggtcgaatt gcggggcgtg caggttgacg
     3841 tggctgtcga tcagcatggc agctcttagg ctgcccgcgc ggcctggcga agttcgccca
     3901 gcgcggtgaa gagcgcgtcg gcgcggtcga ggttcagcgc ctccacgtcg cgcgacagct
     3961 gttcgagcgt ctcccagacc tgggcccagc ggtcgaggcc gccaatcccc tgcccggccc
     4021 ggtcggtggc aaacccgtgc acccgctccg ccagacggtc gaacagaagg ttgaactgcg
     4081 cccgcccctc agcgccgcgg aaccggtcgg caagcgagag cgccatggcc tcgtccaccc
     4141 tgggcagctc ctcgatcagg gcgcgggccg cgtcgtccat atcgagggcc ttggcgccgg
     4201 ccagcgccca ggcccggccc ggcgcgccgc cggacatctt cgccaggcgc agggaatcct
     4261 cgacgctgac gtcctcgcgg tcccgcacaa aggcggccgt ctcttccagc gagagcggcg
     4321 gaaaggccag gcggcggcac cg
//
LOCUS       DATAJL010000787         2839 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97477,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000787 DATAJL010000000
VERSION     DATAJL010000787.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2839)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2839)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2839
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97477"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1099)
                     /locus_tag="VHN39_15000"
     CDS             complement(<1..1099)
                     /locus_tag="VHN39_15000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="circularly permuted type 2 ATP-grasp protein"
                     /protein_id="HEX2817701.1"
                     /translation="MREALGEVRPHYAALAARIETLSTEELAERQKTLERFFLLQGIT
                     FTVYGAESSTERIIPTDLLPRIIAAEEWKTIEAGLTQRLKALNMFLADIYAGQQILMD
                     GVVPRDLVLKAPSYRREMQNLYVPHQAYANVCGSDLIRQPDGVFAVLEDNLRVPSGVS
                     YMLANREASKRVFPGTFRGMGVRPIDRYPDLLLTTLKSMAADWRPNPQVVVLTPGVYN
                     SAYFEHAYLARLMGTPLVEGRDLVVHDNMVYMRTTTGLRRIDVIYRRVDDDFIDPLTF
                     RRDSGLGSAGLFNAYRAGNVVICNAPGTGVADDKAVYAYVPEIIRYYLGEDAILPNIE
                     TFLCREPAQLSHVLANLDKFVVKAVGASGGYG"
     gene            1386..>2839
                     /locus_tag="VHN39_15005"
     CDS             1386..>2839
                     /locus_tag="VHN39_15005"
                     /inference="COORDINATES: protein motif:HMM:NF013283.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEX2817702.1"
                     /translation="MARLVYAMTAGAVFCIQGFCTPAFAAEPKAQIEGTLPSDLRAAV
                     VKAVGAADKPIENRFEARRRAREAAEDAISVLRSEGYYAYDVEPDVGEGDAPKALVKI
                     APGPRFVLGRAHIDWVGGPPDPAAVQAAQSAIALTPGQPGRAADVVAAEGRVVAAIQK
                     RGYADVAAQPREVIVDHVDNSVSPDYRIAAGAIVHLDGIQLTTNGRTHPEWMQHLAAW
                     RHGDAYDPEDVAMLERRLLDTGVYESVTVALAPATDITPDGLRPVVVSVAERQKRTIE
                     AGASFDTTDGIGLDAKWTRYSMLGRADTFSVLGRLSKIDSRVQVDLSLPHWDVPQQTL
                     AARAAVYSTSTPAYDQQGVMVSLDLTRRWGRNATFGLTGTYFTWGGSLDLSRTSEVTI
                     GSLTSLGRDIATFAALADMALDRSDDPLDPRRGWRVSARVEPTLLTGDGVLPYLKVQG
                     QVSGYLPFDLKGDTVLAARVHLGSIINGSVQDIPA"
BASE COUNT          434 a          947 c         1010 g          448 t
ORIGIN      
        1 tgccgtagcc gccggacgcg cccacggcct tgaccacgaa cttgtcgagg ttggccagca
       61 catggctgag ctgggcgggt tcacggcaga ggaaggtctc gatattgggc aggatggcgt
      121 cttcgccgag gtagtagcgg atgatctccg gcacataggc gtagaccgcc ttgtcgtcgg
      181 cgacgccggt gccgggcgcg ttgcagatca ccacattgcc ggcgcggtag gcgttgaaca
      241 ggcccgccga gccgagccct gaatcgcggc ggaaggtcag ggggtcgatg aagtcgtcgt
      301 ccacccggcg gtagatcaca tcgatccggc gtaggcccgt cgtggtgcgc atgtagacca
      361 tgttgtcgtg gaccacgagg tcgcggccct cgaccagcgg cgtgcccatc agccgggcca
      421 ggtaggcgtg ctcgaagtag gcggagttgt agacgccggg cgtcagcacc acgacctgcg
      481 ggttcggccg ccagtcggcc gccatgctct tcaaggtggt cagcagcagg tccggatagc
      541 ggtcgatggg gcgcacgccc atgccgcgga aggtgccggg aaagacccgc ttggaggcct
      601 cgcggttggc cagcatgtag gagaccccgg agggcacgcg cagattgtcc tccagcaccg
      661 cgaaaacgcc gtccggctgg cggatcaggt ccgagccgca gacattggcg taggcctgat
      721 gcggcacgta gagattctgc atctcgcggc gataggaggg cgccttcagc accaggtcgc
      781 ggggcacgac gccgtccatc aggatctgct ggccggcgta gatgtcggcc aggaacatgt
      841 tcagcgcctt caggcgctgg gtgaggccgg cctcgatggt cttccattcc tcggccgcga
      901 tgatccgcgg caacaggtcg gtggggatga tccgttcggt ggagctctcg gcgccataga
      961 ccgtaaaggt gatgccctgc agcaggaaga agcgctcaag ggtcttctgg cgctcggcca
     1021 gttcctcggt gctcagggtt tcgatgcgag cggcgagtgc ggcgtagtgc gggcggacct
     1081 cgccgagggc ctcgcgcatt tcgtcatagg gcagggctgg gggcagggcc ggcgcggcca
     1141 gatccgacgc ctggtcggcc gctttggcct tggctgcccg caacgtcacg cctggcgtcc
     1201 cttttctcac ctcttgtcct tacggtgctt aggcgctcac cggaagacgg gcgcggcctt
     1261 tcgtccatgg acaggcccgc tggcgccgac tgcccaggca ttgggcgcct ccggagtggc
     1321 gcggaggtga cagtctcgcg gggcgcggct acacccgggc gaggggcgtg cgaggattct
     1381 ggagcttggc tcgtcttgtc tacgccatga cggccggggc ggtattctgc atccagggct
     1441 tttgcacgcc cgcgttcgcc gccgagccca aggcgcagat cgaaggaacg ctcccgtcgg
     1501 acctgcgcgc cgccgtggtc aaggcggtgg gcgccgccga caaacccatc gagaaccgct
     1561 tcgaggcccg ccggcgcgcc cgcgaggcgg ccgaggacgc catcagcgtg ctgcgctcgg
     1621 agggttacta cgcctatgac gtcgagcccg acgtgggcga gggcgacgcc cccaaggcgc
     1681 tggtcaagat cgcgccgggg cccaggttcg tgctcggccg ggcgcacatc gattgggtcg
     1741 gcggcccgcc cgatcccgcc gcggtgcagg cggcgcagtc tgccatagcg ctcaccccgg
     1801 gccagcccgg gcgcgccgcg gacgtggtcg ccgccgaggg ccgggtggtg gcggccatcc
     1861 agaagcgggg ctatgccgac gtagcggccc agccccgcga ggtgatcgtc gaccacgtcg
     1921 acaacagcgt cagccccgac taccggatcg ccgccggcgc catcgtccac ctggatggca
     1981 tccaactcac caccaacggc cgcacccacc ctgagtggat gcagcacctg gcggcctggc
     2041 ggcacggcga cgcctatgat ccggaggacg tggccatgct ggagcgccgg ctgctggaca
     2101 ccggcgtcta cgagtcggtg accgtggccc tggcgccggc caccgacatc acgcccgacg
     2161 gcctgcgccc tgtggtggtc agcgtggcgg agcgtcagaa gcggaccatc gaggccggcg
     2221 cgagcttcga caccaccgac ggcataggcc tcgacgccaa gtggacgcgc tacagcatgc
     2281 tcggccgcgc cgacaccttc tcggtcctag gacggctctc gaagatcgac agccgggtcc
     2341 aggtcgacct gtcgctgccc cactgggatg tcccgcagca gacgctcgcc gcgcgggccg
     2401 ccgtctactc gacatcaaca ccggcctacg accagcaggg tgtgatggtc agcctcgatc
     2461 tgacccgccg ctggggacgt aacgccacgt ttggcctgac cgggacctat ttcacctggg
     2521 gcggctcgct ggacctttcg cgcaccagcg aggtgacgat cgggtcactg acctcgctcg
     2581 gccgggatat cgcgaccttt gcggccttag cggacatggc gctggatcgt tccgacgatc
     2641 ccctcgaccc caggcgcggc tggcgggtga gcgcccgggt cgagcccacc ttactgaccg
     2701 gtgatggcgt gctgccctat ctgaaggtgc agggccaggt ctccggctat ctgccgttcg
     2761 acctgaaggg tgacaccgtg ctggcggccc gggtgcacct gggcagcatt atcaacggct
     2821 cggtccagga catcccggc
//
LOCUS       DATAJL010000788         1743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_122379,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000788 DATAJL010000000
VERSION     DATAJL010000788.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122379"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            131..331
                     /locus_tag="VHN39_15010"
                     /pseudo
     CDS             131..331
                     /locus_tag="VHN39_15010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517416.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
     gene            422..790
                     /locus_tag="VHN39_15015"
     CDS             422..790
                     /locus_tag="VHN39_15015"
                     /inference="COORDINATES: protein motif:HMM:NF025203.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HEX2817703.1"
                     /translation="MAVHPQTAEEMPSVSDTNGDGRISREEWHASAWQVHVAQWGAPE
                     ARGIPVEKVVEALCHGISRCIPVANAFVTIIDRNHDGYVDRRESDLDSDNLFRANDLN
                     HDGYVTVEEMTALASRSSPK"
     gene            complement(845..>1743)
                     /locus_tag="VHN39_15020"
     CDS             complement(845..>1743)
                     /locus_tag="VHN39_15020"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817704.1"
                     /translation="IEKNPANQYNGQTGGNPNLKPEISDTYTAGVVFQPSFVPGMSVS
                     VDYFNIKVDQFISRIGATLELTNCVNTGNPVFCNLVHRDPTNGSLFLSNQGFVQDTTL
                     NTGSLQTSGVDLNVSYHTDLSAFGLGDNGSISVSMVGTWLDKTVTQPLPGGPSFDCKG
                     LYGTTCGTPSPEWRHKARLTWNTPYSYGDWVKSLSFSGQWRYFGKVTADSFDANPQLN
                     NPGLQTAVEQRFSAQSYIDLTANFTVHNNLNFRVGVNNVFDKDPPLAGTNLPATVGNG
                     NTFPQVYDALGRFVFVGLSADF"
BASE COUNT          293 a          522 c          611 g          317 t
ORIGIN      
        1 ccaccagccg tccgcgcgca tgcttgtgcg aggccgccgt cggccagggg aagcgcggga
       61 gccagagctc cggcccattc tcgacggtcc ggctatcgtt ggcggcgagc ccgatgtcag
      121 ccacgatgac ctcgccacag ccggctcggg cgacgttctc gccgggttta tcggggggct
      181 ggtggcgcag gggatggaga gcttcgaggc cgcctgcgcg ggcgcctgga tccacgccga
      241 agccgccgat ctgcacgggc cgggactgat cgctgaagac cttccgggcc ttgcgccggc
      301 ggtcctgcgc cggctgttcg acgagcgtta gaggaccgca gggtcctgcc gccaaggagg
      361 tccgacgctg tccatcaccc gtcttgccct gaacctggcg tttctggctg ccgcacaggg
      421 catggctgtc catccacaga cggctgaaga gatgccgagt gtctccgaca cgaacggcga
      481 cggacgcatc agccgggaag aatggcatgc cagcgcctgg caggtgcatg tcgcccaatg
      541 gggtgcgccc gaggcgcgtg gaattccagt tgagaaggtc gtggaagccc tctgtcacgg
      601 gatttcacgc tgcattcccg tggccaatgc gttcgtcacg atcatcgatc gcaaccacga
      661 cggatacgtc gatcgccgtg agagcgatct ggactccgac aacctgttca gggcgaacga
      721 cctgaaccac gacggctacg tcaccgtcga ggaaatgacc gcgctggcga gccggtcgtc
      781 gccgaagtga aaaagggcgg cggatcgctc cgccgcccct cttcgaagtc tggctgtccg
      841 tggcctagaa gtcggcgctc agacccacga acacgaaccg gcccagggcg tcgtagacct
      901 gcgggaaggt gttcccgttg ccgaccgtgg ccggcaggtt ggtgccggcc agcggcgggt
      961 ccttgtcgaa cacgttattc acgcccaccc ggaagttcag gttgttgtgg accgtgaagt
     1021 tggccgtcag gtcgatgtag ctctgcgcag aaaagcgctg ctcgacggcg gtctgcagcc
     1081 ccgggttgtt gagctgcgga ttggcgtcga aggagtcggc cgtgaccttg ccgaagtagc
     1141 gccattgacc cgagaagctc aggctcttga cccagtcgcc gtaggaatac ggcgtgttcc
     1201 aggtcaggcg cgccttgtga cgccattccg ggctgggcgt gccgcaggtc gtgccataga
     1261 ggcctttgca gtcgaaggac gggccgcccg gcaggggctg ggtgaccgtc ttgtcgagcc
     1321 aggttcccac catgctgacc gagatcgagc cattgtcgcc gaggccaaac gccgacaggt
     1381 cggtgtggta gctgacgttc aggtcgacgc cgctggtctg cagagagccg gtgttcaagg
     1441 tggtgtcctg cacgaagccc tggttcgaca ggaacagcga gccattggtg gggtcgcggt
     1501 ggacgaggtt gcagaacacc gggttgccgg tgttgacgca gttggtgagt tccagggtcg
     1561 cgccgatgcg ggagatgaac tggtcgacct tgatattgaa gtagtcaacc gagacgctca
     1621 tgcccgggac gaagctcggc tggaagacga cgccggcggt ataggtgtcg ctgatttccg
     1681 gcttcaggtt cgggttaccg ccggtctggc cattgtactg gttggccggg ttcttctcga
     1741 tgg
//
LOCUS       DATAJL010000789         1561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97518,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000789 DATAJL010000000
VERSION     DATAJL010000789.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97518"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..541
                     /locus_tag="VHN39_15025"
     CDS             <1..541
                     /locus_tag="VHN39_15025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEX2817705.1"
                     /translation="TGAIDDGAGVAIATAAGKLAGGLHPRRTIRVVMWGSEEQGGSGD
                     AYAAAHRAEVGKMVVVGESDLGAGLIWSLSLPKSSAETPAMKAFLTVIGPLKIVVNTG
                     PAQFGGSDIEGLIAAGAPFVDFNQDASRYFDLHHSADDTLDKIDPKELAQNVAVWAAF
                     LYTVADSDIDFRKANAATK"
     gene            538..1503
                     /locus_tag="VHN39_15030"
     CDS             538..1503
                     /locus_tag="VHN39_15030"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEX2817706.1"
                     /translation="MSFSLAGQHVAVLMGGLSSEREVSLVSGRECAGALERLGARVSR
                     VDAGRDVAQVLTMLKPDVCFNALHGEWGEDGCVQGVLQTLGLRYTHSGVLASALAMDK
                     AKAKAVLAAAGVAVPGGGLFNRFEAAAEHVMAPPYVVKPNAEGSSVGVFLVFEGANRP
                     PQEIVAPSWTFGEEVMIEPYIRGRELAVGVMDGKAMSVTDIFPRTGFYDYEAKYADGG
                     SVHVVPAEIPDHAFEKALRMSEAAHAALGCRGVTRSDLRYDDINDVLVLLEVNTQPGM
                     TPTSLIPEQAALQGVDFDRLVLWITEDAYGGGGAGRLATKGETPG"
BASE COUNT          248 a          511 c          557 g          245 t
ORIGIN      
        1 caccggcgcc atcgatgacg gggcgggcgt cgccatcgcc accgcggccg gcaagctcgc
       61 ggggggcttg catcctcgcc gcacgatccg agtggtcatg tggggctcgg aggagcaagg
      121 cggcagcggc gacgcctacg ccgccgccca cagggccgag gtcggcaaga tggtggttgt
      181 cggcgagagc gacctgggcg ccggcctgat ctggagcctc agcctgccga agagctcggc
      241 cgagaccccg gccatgaagg ccttcctgac cgtcatcggg ccgctgaaga tcgtcgtcaa
      301 cacggggccg gcgcagttcg gcggctcgga catcgagggc ctgatcgccg ccggcgcgcc
      361 cttcgtggac ttcaaccagg acgctagccg ctacttcgac ctgcatcatt cggccgacga
      421 caccctggac aagatcgacc cgaaggaact ggcgcagaac gtggcggtgt gggcggcgtt
      481 cctctacacc gtcgccgaca gcgacatcga tttccgcaag gctaacgcgg cgaccaaatg
      541 agcttctccc tggcaggcca gcacgtcgcc gtcctgatgg gcggcctctc ctcggagcgg
      601 gaggtgagcc tggtgtcggg ccgcgaatgc gccggcgccc tggagcgtct gggggctagg
      661 gtgagccgcg tggacgccgg ccgcgacgtg gcccaggtgc tgaccatgct caagcccgac
      721 gtctgcttca acgcgctcca cggcgagtgg ggcgaggacg gctgtgtcca gggcgtcctg
      781 cagacgctgg gcctgcgcta cacccattcc ggcgtgctgg cctccgcgct ggccatggac
      841 aaggccaagg ccaaggcggt gctggccgcg gccggcgtgg cggtgccggg gggtgggctc
      901 ttcaaccgtt tcgaggcggc ggccgagcac gtcatggcgc cgccctatgt ggtcaagccg
      961 aacgccgagg ggtcctcggt cggggtgttc ctggtcttcg aaggcgccaa ccgcccgcca
     1021 caggaaattg tcgccccatc ctggactttc ggcgaagagg tgatgatcga gccctacatc
     1081 cgcggcaggg agctggcggt gggcgtcatg gacggcaaag ccatgagcgt caccgacata
     1141 ttcccgcgca ccggctttta tgactatgag gccaagtacg ccgacggcgg ttcagtgcac
     1201 gtcgtccccg ccgaaatccc ggaccatgcc tttgaaaagg ctctgagaat gagcgaggcg
     1261 gcgcatgccg ccctgggttg ccgaggggtt acccgctccg acctgcgtta tgacgatatt
     1321 aacgacgttc tggtcctcct tgaggtcaac acccagcccg gcatgacgcc cacttcgctc
     1381 atcccagagc aggcggcgct gcagggcgtg gatttcgacc gattggtgct ttggatcacg
     1441 gaggatgcgt atggcggcgg cggtgcgggg aggctcgcga ctaaaggcga aactcccggc
     1501 taaggcgccc cccaaggcgg cgcggcgggc ggctgcgccg ccttgggggg cgccttagcc
     1561 g
//
LOCUS       DATAJL010000790         1514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_84970,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000790 DATAJL010000000
VERSION     DATAJL010000790.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_84970"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            453..600
                     /locus_tag="VHN39_15035"
                     /pseudo
     CDS             453..600
                     /locus_tag="VHN39_15035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009020535.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            833..>1514
                     /locus_tag="VHN39_15040"
     CDS             833..>1514
                     /locus_tag="VHN39_15040"
                     /inference="COORDINATES: protein motif:HMM:NF014585.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase B/oxoprolinase family protein"
                     /protein_id="HEX2817707.1"
                     /translation="MGAALERTAHSVNIKERLDFSCALFDADGGLVANAPHMPVHLGS
                     MGASVRAVRDRHPVLHAGEAFALNNPYAGGTHLPDITVVMPIFMDGADQPAFYVAARG
                     HHADIGGVQPGSMPPFSKTIDEEGVMLDALPIMREGRFLEAETRSVLTSGRWPARNPD
                     TNLADLKAQIAACQAGASAVSEMIRTYGAQAVARYMTFVQQNAAAAVRRAVGRLSDGF
                     ARVPMDGGG"
BASE COUNT          224 a          608 c          474 g          208 t
ORIGIN      
        1 gcactcgctg accgccttcg gcggcgccgc cggccaggtt gcctgccaaa ccgccgaggc
       61 gctgggcgtg acggagatcc tctgccccag atacggcagc gtccttagcg cctggggcat
      121 cggccaggct caggtgacgg cgctccgcca agccggcctg gagatcgccc tggacgagcc
      181 tggcctcgcc cgcgcccgcg agttgctctc gcaagtcgaa cagtccgccc gcgaggccat
      241 gaccgaacag ggcgcggaga ccggcgctgt ccgccgcacc ctgcgcctgc gctacgacgg
      301 cgccgacgcc gagcttcccg tgccgtactg cgagctcgcc gaagcgaaag ccgccttcga
      361 agccgcccac caccgcctct tcggcttcat cgagcctgag cggactatcc tcatcgcggc
      421 ggtggaggcg gaagcttcag ccccttctcc ccttgcggga gaaggtgtcg cccgaagggt
      481 gacggatgag gggtcaccct ccgcccgcga aacccctcat ccgacccgct ccgccgccca
      541 ccttctcccg gaaggagaga aggacacggt gcggatgttc gcccacggcc aatggcatga
      601 agcgcccgtc gtctcggcag agggtttccg cgaacaggac ggcccagccc tcatcgtccg
      661 ccccgacacc cagatcgcgc tcgcccccgg ctggcgcgcc accgcccacg acgacggctt
      721 gatcgtcctc acccgcaccg ccgccgcgac caccaccgcc atcgcgctcg acaagcccga
      781 cccggtcaca ctggagctct tcaaccgccg cttcatgggc gtggccgagg ccatgggcgc
      841 ggccctggag cgcaccgccc attcggtgaa catcaaggag cggctcgact tctcctgcgc
      901 gctcttcgac gccgatggcg ggctggtcgc caacgccccg cacatgccgg tgcacctggg
      961 cagcatgggc gcttccgtcc gcgccgtccg cgatcgccac ccggtgctgc acgcgggcga
     1021 ggccttcgcg ctcaacaacc cctacgccgg cggcacccac ctgcccgaca tcaccgtcgt
     1081 catgccgatc ttcatggacg gcgcagacca gccggccttc tacgtcgccg cccgtggcca
     1141 ccatgccgac atcggcggcg tccagccggg ctccatgccg ccgttctcga agaccatcga
     1201 tgaggagggc gtcatgctgg acgccctacc gatcatgcgc gagggccgct tcctggaggc
     1261 cgagacgcgg agcgtgctca cgtccggccg ctggcccgcc cgcaaccccg acaccaacct
     1321 cgccgacctc aaggcccaga tcgccgcctg ccaggccggc gcgtccgccg tctccgagat
     1381 gatccgcacc tatggcgccc aggccgtcgc ccgctacatg acctttgtcc agcagaacgc
     1441 cgcggccgcc gtgcgccgcg cggtgggcag gctctccgac ggctttgccc gcgtgcccat
     1501 ggacggtggc gggg
//
LOCUS       DATAJL010000791         2334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_122406,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000791 DATAJL010000000
VERSION     DATAJL010000791.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122406"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..622
                     /gene="cyoC"
                     /locus_tag="VHN39_15045"
     CDS             <1..622
                     /gene="cyoC"
                     /locus_tag="VHN39_15045"
                     /inference="COORDINATES: protein motif:HMM:NF012720.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009486 - cytochrome bo3 ubiquinol oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0015990 - electron transport coupled proton
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HEX2817708.1"
                     /translation="YKLGRGAESDARGHGGGGPASKRVIVAYGFWIFLLSDIVMFSAF
                     FASYAVLSGNTAGGPGAKALFDLNNVAIETACLLLSSFSCGMASLAAASRNKPAFYLM
                     MAVTFILGAAFITLEVREFAGLAAAGNGPSRSAFLSAFFALVGCHGAHVSAGLLWLLT
                     MIAQVFAKGFRPEILRRILCFSLFWHALDIIWVALFTVVYLLGVYA"
     gene            619..1020
                     /gene="cyoD"
                     /locus_tag="VHN39_15050"
     CDS             619..1020
                     /gene="cyoD"
                     /locus_tag="VHN39_15050"
                     /inference="COORDINATES: protein motif:HMM:NF015582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009486 - cytochrome bo3 ubiquinol oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0015990 - electron transport coupled proton
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HEX2817709.1"
                     /translation="MSESHPHDHPGYGDTAPGDERLDGSGVAQGITGYLLGLALAGGL
                     TAASFYFAAGHALWGPAMPAALLALAVAQMGIHLVFFLHITTGPESTNNVLALAFGVL
                     IVFLLVAGTVIITTTMNHNMPPMDQIMSMQR"
     gene            complement(1075..>2334)
                     /locus_tag="VHN39_15055"
     CDS             complement(1075..>2334)
                     /locus_tag="VHN39_15055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817710.1"
                     /translation="AASPLWHEQGLLFENQTWAHRALGVLDAEPDNEATLRKRMALMS
                     ALLIYDGITEDVHRRLRAACDSAERLGLQDIQLNAVITLWGHNLRIGRYGAAEAFAKQ
                     HDALTHAFDSGGGPAPAPLMLGICAHYRGRQVEASVLLERIVKETTEEARAINLSRYG
                     YDNEVGALRYLSNALFLAGRGREAARVSEEAIAKAAQRPNIWSLHDTLAWRVFNAFYA
                     RDGDEVDRRTDEIIKEGSRLGMANAVGVARTFRGLWHCDSGDWAQGEAMVRQGMAELA
                     ATHNFVLHPLLEAELHLRRVRRARDLSMIEPVGVPWREADPETWVTPEIRRIEGELAM
                     LAGDFPRARLLFDEAEAMATRQGAARWRLRAALSAAELELRCERPRAAAECVAPALRA
                     FAAAEVDGDLQRARQLVASTTSVNAAG"
BASE COUNT          343 a          809 c          753 g          429 t
ORIGIN      
        1 ctacaagctc gggcgcggcg ccgagtccga cgcgcgcggc cacggcggtg gcggcccggc
       61 gtcaaagcgg gtgatcgtcg cctacggctt ctggattttc ctgctgagcg acatcgtgat
      121 gttctcggcc ttcttcgcga gctacgcggt gctctcgggg aacaccgccg gcgggcccgg
      181 cgcgaaggcg ctcttcgacc tcaacaacgt ggccatcgag acggcctgcc tgctgctctc
      241 cagctttagc tgcggcatgg cctcgcttgc cgccgcctcg cgcaacaagc cggccttcta
      301 cctgatgatg gcggtgacct tcatcctggg cgcggccttc atcaccctgg aggtgcgtga
      361 gttcgccggc ctggcggcgg cggggaacgg accttcgcgc agcgccttcc tcagcgcctt
      421 cttcgccctg gtcggctgcc acggcgccca cgtcagcgcc ggcctgctct ggctgctgac
      481 catgatcgcc caggtgttcg ccaagggctt ccggccggag atcctgcgcc ggatcctttg
      541 cttcagcctg ttctggcacg ccctggacat catctgggtg gcgctgttca ccgtcgtcta
      601 tctgctgggg gtctacgcat gagcgagagc catccgcacg accatccggg ctacggcgac
      661 accgcgcccg gcgacgaacg gctcgacggc agtggcgtcg cccagggcat caccggttat
      721 ctgctgggcc tggccctggc cggcggactg accgcggcct cgttctactt cgccgcaggc
      781 cacgctctgt gggggcctgc aatgcccgcc gccctcctgg ccctggcggt ggcccagatg
      841 ggcatccacc tggtgttctt cctgcacatc accaccgggc cggaaagcac caacaatgtg
      901 ctcgccctgg ccttcggggt gctgatcgtc ttcctgctgg tggccggcac ggtgatcatc
      961 acgaccacga tgaaccacaa catgccgccc atggaccaga tcatgtccat gcagcgctag
     1021 gacgtggccg tcccgccgcg acacccagtc ggcggcggtg tcagacgagt gtcttcagcc
     1081 cgccgcattc acgctcgttg tcgaggcgac gagctggcgg gcgcgctgca ggtcgccgtc
     1141 gacctcggcc gctgcgaagg cccgcagcgc cggcgccacg cattccgcgg cggctcgtgg
     1201 ccgctcgcag cgaagctcca gctccgctgc cgaaagtgct gcgcgcaggc gccagcgcgc
     1261 tgcgccctgt cgtgtcgcca tcgcctctgc ttcgtcgaac aggagccgcg cccggggaaa
     1321 gtcgccggcg agcatggcga gttcaccctc tatgcgccgg atctcaggcg tgacccaagt
     1381 ctcaggatcg gcctcccgcc agggaacccc gaccggctcg atcatcgaga gatctcgcgc
     1441 gcgccgcaca cggcggaggt gaagctcggc ttccagcaaa gggtgcagca cgaagttatg
     1501 ggtggcggcg agttcggcca tgccttgccg gaccatggct tcgccttgcg cccaatcgcc
     1561 ggagtcgcag tgccaaaggc cgcggaacgt cctagcgacg ccaacggcat tggccattcc
     1621 caggcgcgat ccctccttga tgatctcatc cgtccggcga tcgacttcgt caccatcgcg
     1681 cgcgtaaaac gcattgaaca cgcgccaggc gagcgtgtcg tgcaggctcc agatgttggg
     1741 ccgctgcgcc gccttggcga tcgcctcctc gctcacccgg gcggcctcac ggccgcgtcc
     1801 tgccaggaac agggcgttgc tgaggtagcg cagcgctcca acctcgttgt cgtagccgta
     1861 ccggcttaga tttatggcgc gcgcttcctc tgtcgtttct ttcacaatgc gttcgagaag
     1921 gacgctggcc tcaacttggc gtccgcggta gtgggcgcag attcctagca tcaaaggcgc
     1981 gggggcgggg ccgccgccac tatcgaaggc gtgggtaagc gcatcgtgtt gcttcgcgaa
     2041 ggcttccgca gccccataac gccctatccg aaggttgtgc ccccagagcg ttatcacggc
     2101 gtttagttgg atgtcctgga ggccaagtcg ttcagcagag tcgcaggcgg cgcgcaatct
     2161 gcgatgtacg tcctccgtga tcccgtcata gatcagcagc gccgacatga gcgccatgcg
     2221 cttcctgagg gtggcttcgt tgtcgggttc agcgtcgagc acgccgaggg ccctgtgcgc
     2281 ccaggtttgg ttttcgaaca gcaaaccctg ttcgtgccag agcggggaag ctgc
//
LOCUS       DATAJL010000792         3224 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_109209,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000792 DATAJL010000000
VERSION     DATAJL010000792.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3224
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109209"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..1588
                     /locus_tag="VHN39_15060"
     CDS             143..1588
                     /locus_tag="VHN39_15060"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2817711.1"
                     /translation="MRHTAFVTFAALLLTAAGASAQERDTRSPDREACNSGKPDKAIT
                     ACTHLIQDKALPAADRAISLRNRGFALQTRGDLDKAIADYDAALGLGEAAAGSSTVFA
                     KTYINRGIAYAAKGDDIRALADYSSALAVDPTVGVAYLNRAAIALKTGDNIRALADLT
                     QAARFSPKEPAIFVSRGALYGNSGDQDRAIADFSVAIALNPTDATAWRDRGMAFHKKG
                     DEAHAEADAAQALRLDPNNSGAHHDRGLSLRAQGKTDEAIAEFGRAIALNPTAAETIK
                     ARGDAYLAKGERDLAIADYSQAIGLEPNFRDAYNNRGVAYLAMADWDHAVADFGKAIG
                     LDSQLTAAYFNRGQALEAKGERTLAFADFDTVIRLRPDGGAAYRHRGFLHQTKGDRDA
                     AIADYGRAIELDPKDEEAWRGRGIANFDSHKLDSAIADLTQAVALNGSDALAFHVRSQ
                     AYGRKRDILHAEEDDAIAIRLDPRLAQRASR"
     gene            complement(1585..2271)
                     /locus_tag="VHN39_15065"
     CDS             complement(1585..2271)
                     /locus_tag="VHN39_15065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2817712.1"
                     /translation="MAGRVFAITGASGVLGAAVAQAAAAQGARLALIDFAQAPPAQPS
                     GPDVFFQGGVDLTDAVAAGAAIEAVADRFDGLDVLLNIAGGFRWETLETSLVEGWHRL
                     FLMNVQTTANASRAAIPHLRRSVAGRIVNVGANAALKASMGMGPYAASKAGVHSLTQA
                     LAEELKSEVTVNAVLPSILDTAANRADMPKADFASWVRPEELAAVMLFLASEKASAVT
                     GALIPVTGRV"
     gene            complement(2284..>3224)
                     /locus_tag="VHN39_15070"
     CDS             complement(2284..>3224)
                     /locus_tag="VHN39_15070"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX2817713.1"
                     /translation="ATSVDRQCGSSQQALHFASQAVMSGTMDVVIASGVESMTRVPMG
                     LSVALPAKEGFGTPMSPNQQKRYPNIQFSQFMGAEMMAAKYGLTKDQLDEFAYNSHQR
                     AIAATQAGAFKDEIVAIDGRDGKGDEGSTVRHDSDEGIRYDSSLDAIRAVKLLREGGA
                     ITAATSSQICDGASGVMVVSEKALKEYGLTPLARIHHLTLIGHDPVIMLEAPLPATER
                     ALKKTGMSIDDIDLFEVNEAFASVPVAWLQQIGADPTRINVNGGAIALGHPLGASGTK
                     LMTTLLHGLKARNKTWGLQTMCEGGGLANVTIVERL"
BASE COUNT          517 a         1169 c         1052 g          486 t
ORIGIN      
        1 ccggcgaccc cttcagcccc cactaccgag acctcttccc gctctgggcc accggcgcct
       61 acgtcccgct cgacttcagc cgcgccgcgg tgaaccgcga cgccgagctg gtggtgacgc
      121 tgagcccggc gaagtgaacg ccatgcgcca caccgccttt gtcacgtttg ccgcgctcct
      181 cctcaccgcc gccggcgcct cggcccaaga gcgcgacaca cgaagcccgg accgcgaagc
      241 ctgcaattcc ggcaagccgg acaaggccat cacagcctgc acccacctga tccaggacaa
      301 ggccctcccc gccgccgacc gcgccatctc gctccgcaac cgcggcttcg cgctgcagac
      361 ccgcggcgac ctggacaagg cgatcgccga ctacgacgcc gcgcttggcc tgggcgaagc
      421 cgcggcaggc agctcgacgg tcttcgccaa gacctacatc aaccgcggca tcgcctatgc
      481 ggccaagggc gacgacatcc gcgcgctcgc cgactacagc tcagccctgg cggtcgatcc
      541 gaccgtcggc gtggcctacc tcaaccgcgc ggccatcgcg ctgaagaccg gcgacaacat
      601 ccgcgcgctc gccgacctca cccaggccgc gcgattctcg cccaaggagc cggcgatctt
      661 cgtcagtcgt ggcgcgctct atggcaactc gggcgaccaa gaccgcgcca tcgccgactt
      721 ctccgtcgcc atcgcgctca accctaccga cgccaccgcc tggcgcgacc ggggcatggc
      781 cttccacaag aagggcgacg aggcgcacgc cgaggccgac gccgcgcagg ccctgcggct
      841 cgatcccaac aattcgggcg cccaccacga ccggggcttg agccttcgtg cgcagggcaa
      901 gaccgacgaa gccatcgccg agtttggccg cgccatcgcg ctcaacccca ccgccgccga
      961 gacgatcaag gcgcgcggcg acgcctacct cgccaagggc gagcgggacc tggccatcgc
     1021 ggactacagc caggcgatcg gtctcgaacc caacttccgc gatgcctaca acaatcgcgg
     1081 cgtcgcctat cttgcgatgg ccgactggga ccacgccgtc gccgatttcg gcaaggccat
     1141 cgggttggat tcgcagctca ccgccgccta cttcaaccgc ggccaggcct tggaggccaa
     1201 gggggagcgc acgctcgcct ttgccgactt cgacaccgtc atccggcttc gcccggatgg
     1261 cggcgccgct taccgccatc gcggcttcct gcatcagacc aagggcgata gggacgccgc
     1321 gatcgctgac tacggccggg cgatcgagct tgacccgaag gacgaggaag cctggcgtgg
     1381 ccgcgggatc gccaacttcg acagccacaa gctggactcc gcgatcgccg atctgaccca
     1441 ggcggttgcg ctgaacggga gcgacgccct ggctttccat gtccgaagcc aggcctacgg
     1501 ccggaagcgc gacatcctcc acgcggagga agacgacgcg attgcgatcc ggctggaccc
     1561 gaggctggcg cagcgcgcct cccgctagac ccgcccggtg accgggatca gggcgccggt
     1621 gacggcgctg gccttttcgc tggccaggaa cagcatcacg gcggccagct cttccggccg
     1681 cacccagctc gcgaaatccg ccttgggcat gtcggcgcgg ttggcggctg tatcgaggat
     1741 cgagggcagg acggcattga ccgtgacctc gctcttcagc tcttccgcca gtgcctgggt
     1801 gaggctgtgc acaccggcct tggacgccgc ataaggaccc attcccatcg aggccttcag
     1861 cgctgcattg gcccccacat tgacgatccg cccggccacc gagcggcgca ggtgcgggat
     1921 cgccgcgcga ctggcgttgg cggtagtctg gacgttcatc aggaaaagcc ggtgccagcc
     1981 ttccactagg ctggtctcca gagtttccca gcggaaaccg ccggcgatat tgagcaggac
     2041 gtccaggccg tcgaaccggt cggcgacggc ttcgatggcg gccccggccg ccaccgcgtc
     2101 ggttaggtcg acgccaccct ggaaaaacac gtcaggcccc gacggctgag ccggcggagc
     2161 ttgagcgaag tcgatcagcg ccaggcgtgc gccctgcgcc gccgccgcct gtgcgaccgc
     2221 ggcgcccagg acgccggacg cgccggtgat ggcgaagacg cgtccggcca tggctagccg
     2281 cccttacagc cgctcgacga tggtcacatt ggcgaggccg ccgccttcgc acatggtctg
     2341 caggccccac gtcttgttgc gggccttcag gccgtgcagc agcgtggtca tcagcttggt
     2401 gcccgaggcg cccaagggat ggccgagggc gatggcgccg ccattgacat tgatccgggt
     2461 cgggtccgcc ccgatctgct ggagccaggc caccggcacc gaggcgaagg cctcattcac
     2521 ttcgaagagg tcgatgtcgt cgatcgacat gccggtcttc ttcaacgccc gctcggtggc
     2581 cggaagcggg gcttccagca tgatcaccgg gtcgtggccg atgagcgtca ggtggtggat
     2641 gcgggccagc ggcgtcaggc catattcctt caacgccttt tccgagacga ccatgacgcc
     2701 ggacgcgccg tcgcagatct ggctggacgt ggccgcggtg atagcgccgc cttcgcgcag
     2761 caacttcacg gcgcggatcg cgtccaggct ggagtcgtag cggatgccct cgtcgctatc
     2821 gtgacgcacg gtggagccct cgtcgccctt gccgtcacgg ccgtcgatgg cgacgatctc
     2881 gtccttgaag gcgccggcct gggtggcggc gatggcgcgc tggtgggagt tgtaggcgaa
     2941 ctcgtcgagc tggtccttgg tcaggccgta tttggcggcc atcatctcgg cgcccatgaa
     3001 ctggctgaac tggatgttgg gatagcgctt ctgctggttc gggctcatcg gcgtgccgaa
     3061 gccctccttg gccggcaggg ccaccgacag gcccatgggc acgcgggtca tgctctcgac
     3121 gcccgaggcg atcaccacgt ccatggtgcc gctcatcacc gcctggctgg cgaagtgcag
     3181 ggcctgctgg gacgagccgc actggcggtc gacgctggtg gccg
//
LOCUS       DATAJL010000793         1899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97639,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000793 DATAJL010000000
VERSION     DATAJL010000793.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97639"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1812
                     /locus_tag="VHN39_15075"
     CDS             <1..1812
                     /locus_tag="VHN39_15075"
                     /inference="COORDINATES: protein motif:HMM:NF013784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016638 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase-related protein"
                     /protein_id="HEX2817714.1"
                     /translation="GRFGVTTEYLVNADDIQIKMAQGAKPGEGGQLPGHKVDKNIARV
                     RHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNVNQQARISVKLVSEVGVGTVAAGVA
                     KARADHVTISGFEGGTGASPLTSLTHAGSPWEIGLAETQQTLLLNGLRTRICVQVDGG
                     LRTGRDVAIGALLGADEFGFATAPLIAAGCIMMRKCHLNTCPVGVATQDPVLRARFTG
                     QPEHVINFFFFVAEELREIMAEMGFATVNEMIGRVDRIDLNPALEHWKAQGVDLSRIL
                     YAAPAEGAKGLWNQDRQDHGLGKALDNTLIEAARDALDGGKPMRGEYAVRNVNRTVGA
                     MLSGEVARRYGHAGLPDDTISLSFKGNAGQSFGAFAARGVSLELIGDANDYVGKGLSG
                     GRVVVRQPAEARRDPTRNIIVGNTVLYGAIAGEAYFEGVAGERFAVRNSGAVTVVEGL
                     GDHGCEYMTGGVVVVLGDTGRNFAAGMSGGVAYVYDPAGRFDQLCNKAMVAVEPIAAA
                     GPAAAKSADDPVRPKQRPVSVENNGMGDMLRFDAERLRILIERHHLHTGSARAAEILA
                     NWDQALPSFVKVMPTDYRNALLELASDRETAAAVAAE"
BASE COUNT          318 a          677 c          631 g          273 t
ORIGIN      
        1 ggccggttcg gcgtcacgac cgagtacctg gtcaacgccg acgacatcca gatcaagatg
       61 gcccagggcg ccaagcccgg ggagggcggt cagctgcccg gacacaaggt cgacaagaac
      121 atcgcccggg tccggcactc cacgcccggc gttggcctga tcagcccgcc gccgcaccac
      181 gacatctatt cgatcgagga cctggcgcaa ctcatccacg acctgaagaa tgtcaaccaa
      241 caggccagaa tctcagtgaa actggtctcc gaggttggcg tcggaacggt cgccgcgggc
      301 gtcgccaagg cgcgggccga ccacgtcacc atctcgggct tcgagggcgg caccggcgcc
      361 tcgccattga cctcgctgac ccacgcgggg tcgccctggg agatcggcct ggccgagacc
      421 caacaaaccc tgctgctgaa tggtctgcgc acgcggattt gcgttcaggt ggacggcggg
      481 ttgcgcaccg gccgcgacgt cgccatcggc gccctgctcg gcgccgacga gttcggcttc
      541 gccaccgcgc ccttgatcgc ggccggctgc atcatgatgc gcaagtgcca cctcaacacc
      601 tgcccggtgg gggtggccac ccaggacccg gtgctgcgcg cgcgcttcac cggccagccc
      661 gagcacgtga tcaacttctt cttcttcgtg gccgaagagc tgcgcgagat catggccgag
      721 atgggctttg cgacggtcaa cgagatgatc ggccgcgtcg accgcatcga cctcaatccg
      781 gcgctcgagc actggaaggc gcagggcgtc gacctctcgc ggatcctcta cgccgccccc
      841 gcggagggcg cgaagggcct ctggaaccag gaccgccagg accacggtct cggcaaggcg
      901 ctcgacaaca ccctgatcga agcggccaga gacgcgctcg acggcggcaa gcccatgcgc
      961 ggcgagtacg cagtgcgcaa cgtcaaccgc acggtgggcg ccatgctctc gggcgaggtg
     1021 gcgcgccgct atggccacgc cgggctgccc gacgacacca tctcgctctc gttcaagggc
     1081 aatgccggcc aaagcttcgg cgccttcgcc gcgcgcgggg tctcgctgga gctgatcggc
     1141 gacgccaacg actatgtggg caagggcctt tcaggcggcc gggtggtcgt gcgccagccg
     1201 gccgaggcgc gccgcgaccc aacccgcaac atcattgtcg gtaacacggt gctctacggc
     1261 gccatcgccg gcgaggccta tttcgagggc gtggcgggcg aacgcttcgc cgtgcgcaac
     1321 tccggcgcgg tgacggtggt cgagggcctg ggcgaccacg gctgcgaata catgaccggc
     1381 ggcgtcgtcg tcgtgctggg cgacaccggc cgcaacttcg ccgcgggcat gagcgggggt
     1441 gtagcttacg tctacgatcc cgccggccgc ttcgatcagc tctgcaacaa ggccatggtg
     1501 gcggtggagc ccatcgccgc cgccgggccg gcggccgcca agagcgccga cgatccggtg
     1561 cgcccgaagc agcggcccgt ctccgtcgag aacaacggca tgggcgacat gctgcgcttc
     1621 gacgccgaac gcctgcgcat cctgatcgag cgccatcacc tgcacaccgg gagcgcgcgc
     1681 gccgccgaga tcctggccaa ctgggatcag gcgctcccgt ccttcgtgaa ggtcatgccc
     1741 accgactatc gtaacgccct cctggagctt gcctccgacc gcgagacggc cgccgccgtc
     1801 gccgcggaat agccccttaa gttccggagt cccccgatgg gcaagcccac cggcttcctt
     1861 gagatcgagc gtcatgaccg cacctacgac aaggtgggt
//
LOCUS       DATAJL010000794         2538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85035,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000794 DATAJL010000000
VERSION     DATAJL010000794.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2538
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85035"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..2133
                     /locus_tag="VHN39_15080"
     CDS             67..2133
                     /locus_tag="VHN39_15080"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13 family metallopeptidase"
                     /protein_id="HEX2817715.1"
                     /translation="MKRSQILLALSAALAVAWSASAQTPTPSLVNDHPTGLDLAGMDR
                     NVKPGDDFFAYGNGGWMAKTEIPQDRSSWGTSGELVELTNVRVQTLIQGAAKAAPGTE
                     ARKIGDYYSSYLDAAKIESLGLTPLRPNLARIAAIKDKKALAAEFGRELRADVDALNS
                     TNFETDHLFGLWVEQDLNDPHRYAPYLLQGGLGMPDRDYYLSSNSHMVADRAAYKAHI
                     AKVLTLAGIRDAEAKAQRIIDLETKIAQVQAPRAESEDVLKANNPWPREAFAAKAPGL
                     DWTAFFTAAGLQKRPQFIVWHPKATAGEAALVASQPLSVWKEYLTFHRIDDVSNVLPK
                     AFADERFAFYSHTLSGTPQQQVRWKRAVNATNNALGEAVGKLYVAKYFPPKSKADVEA
                     MVGKLIDAFRVRIDMLDWMAPATKAEAKRKLDTLKVGVGYPDHWIDYSALKVVAGDAL
                     GNQQRAELFEYRRNLAKFGRPVDRGEWAMTPQTVNAVNLPVRNALNFPAAILQAPDFN
                     PVNPIAMNLGATGATIGHEISHSFDDQGAMFDADGRLRNWWTPSDLAHFQASGHALAL
                     QYDTYHPFPDITLNGEQMLSENIADIAGLNAAYDAYRLANGGKEGPSQQGVTGDQQFF
                     IAFSQSWRTKVREATARQRAVVDGHAPAEFRADTVRNMDAWYAAFDVKPGEKLALPPA
                     GRVRIW"
     gene            complement(2138..>2538)
                     /locus_tag="VHN39_15085"
     CDS             complement(2138..>2538)
                     /locus_tag="VHN39_15085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817716.1"
                     /translation="LAEGRALLGAAGGERTPSPERVALAGLVEALKAAPSGIRVELWS
                     ASPLVVAAPRRLAAAEPPTEDLELWAQLATALKDHPTSFARTASAPKTPTAFAAAWAD
                     LARDKVKNGGAFRSAIPKINLGKAGVPALA"
BASE COUNT          441 a          927 c          821 g          349 t
ORIGIN      
        1 gttctctcta gcgcagggcc tcgcgaagcc gtggacaggg ccgaaatccc ggctaggttg
       61 ccggccatga aacgttcgca aattctgctg gcgctcagcg ccgcgctcgc cgtcgcctgg
      121 tccgcctcgg ctcaaacgcc aacgccgtcc ctcgtcaacg accatcccac cggcctagac
      181 ctagccggca tggaccgcaa cgtgaagccc ggtgacgact tcttcgccta tggcaacggc
      241 ggctggatgg ccaagaccga gatcccgcag gaccggtcga gttgggggac gagcggcgag
      301 ctcgtcgagc tcaccaacgt ccgggtccag accctgatcc agggggccgc caaggccgcg
      361 ccggggaccg aggcccgcaa gattggcgac tactattcga gttatctgga cgcggcgaag
      421 atcgaatcgc tcggcctgac gcccctcagg cccaacctgg cccgcatcgc cgccatcaag
      481 gacaagaagg ccctggccgc cgagttcggc cgcgagctgc gcgccgacgt cgatgcgctg
      541 aattccacca atttcgagac cgatcacctg ttcggcctgt gggtcgagca ggacctgaac
      601 gatccccatc gctacgcccc ctatctgctg cagggcgggc tcggcatgcc ggaccgcgac
      661 tactacctgt cgtccaacag ccacatggtc gccgaccgcg cggcctacaa agcccacatc
      721 gccaaggtcc tgacgctcgc cgggatcagg gacgccgagg ccaaggccca gcgcatcatc
      781 gacctcgaga ccaagatcgc ccaggtccag gcgccgcgcg cggagtccga ggacgtgctg
      841 aaggccaata acccctggcc gcgcgaggcc ttcgcggcca aggctccggg cctcgactgg
      901 accgcgttct tcaccgccgc gggcctccag aagcggccgc agttcatcgt ctggcacccg
      961 aaagccaccg ccggcgaagc cgccctggtc gccagccagc ctctttcggt ctggaaggaa
     1021 tacctgacct tccaccggat cgacgacgtc tccaacgtcc tgcccaaggc cttcgccgac
     1081 gagcggttcg ccttctacag ccacacgctc agtggcacgc cgcagcagca ggtccgctgg
     1141 aagcgggccg tgaacgccac caacaacgcg ctgggcgagg cggtcggcaa gctctacgtc
     1201 gccaagtact tcccgcccaa gtccaaggcc gacgtcgagg ccatggtggg caagctgatc
     1261 gacgccttcc gcgttcgcat cgacatgctc gactggatgg cgccagccac caaggccgag
     1321 gccaagcgca agctcgacac gctaaaggtg ggcgtcggct accccgacca ctggatcgac
     1381 tattcggccc tgaaagtcgt ggccggcgac gcgctgggca accagcagcg cgccgagctc
     1441 ttcgagtacc gccgcaacct cgccaagttc ggccgtcccg tcgaccgcgg cgaatgggcg
     1501 atgacacccc agacagtcaa cgccgtgaac ctgccggtgc gcaatgcgct caacttcccg
     1561 gccgccatcc tgcaggcgcc ggacttcaac ccggtcaacc cgatcgccat gaacctgggc
     1621 gccaccgggg cgaccatcgg ccacgagatc agccacagct tcgacgacca gggcgcgatg
     1681 ttcgacgccg atgggcggct caggaactgg tggacgccgt cggacctggc gcacttccag
     1741 gcctccggcc acgcgctggc gctgcagtac gacacctatc acccgttccc ggacatcacg
     1801 ctgaacggcg agcagatgct gagcgagaac atcgccgaca tcgccggcct caacgccgcc
     1861 tacgacgcct atcgcctggc caacggcggc aaggaagggc cgagccagca gggcgtcacc
     1921 ggcgaccagc agttcttcat cgccttctcc cagagctggc ggaccaaggt gcgcgaggcc
     1981 accgcgcgcc agcgggcggt tgtcgacggc catgcgccgg ccgagttccg cgccgacacg
     2041 gtgcgcaaca tggatgcctg gtatgccgct ttcgacgtga agccgggcga gaagctggcc
     2101 ctgccgccgg ccgggcgtgt gcggatctgg tgacgcctta agccagcgcc gggacgccgg
     2161 ccttgccgag gttgatcttc gggatggcgg agcggaaagc gccgccgttc ttgaccttgt
     2221 cgcgggcgag gtccgcccag gccgcggcga aggcggtggg ggtcttgggc gcgctggcgg
     2281 tcctggcgaa ggacgtggga tggtccttca gcgccgtggc caactgagcc cagagctcca
     2341 ggtcctcggt cggcggttcg gcggccgcca gccggcgagg cgcggcgacc accagcgggc
     2401 tcgcgctcca cagctcgacc cggatcccgg agggcgcggc cttcagcgcc tcgaccagac
     2461 ccgccagtgc gacccgctcc ggagaaggcg tgcgctcccc gcccgccgcg cccaggagcg
     2521 cgcggccctc ggccagga
//
LOCUS       DATAJL010000795         2960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_122586,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000795 DATAJL010000000
VERSION     DATAJL010000795.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2960
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122586"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..875)
                     /locus_tag="VHN39_15090"
     CDS             complement(<1..875)
                     /locus_tag="VHN39_15090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2817717.1"
                     /translation="MAEKVLVIGAGMAGLWTALALAPTGREVTLLERDPPPPQGGPDE
                     AFEGWTRRGVGHLRHSHAFLARLRLLIRDEHPELLAELMAAGCRDLTFEGGLTDIHKR
                     TYVPDPVDRDLAVLTSRRTTLELIMRRYVERQANVTIRSGAFVKALRLAPGPVPTVVG
                     VMVEDAEGQHDLTADLVIDAAGRTSGAVERLREAGAVIPEEAEDCGILYFTRHYRLNP
                     GLGEPERGASPLTGDLEYLKFGVFPGDNGCFSITLCVPEIEEELRKKIVDPATFDAAC
                     AALPGLTPWVDPATAT"
     gene            complement(955..1689)
                     /locus_tag="VHN39_15095"
     CDS             complement(955..1689)
                     /locus_tag="VHN39_15095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX2817718.1"
                     /translation="MTPALRTLAALAAALSLSACQKTDDAVFGQRVHAYLMAHPEVVR
                     EAAEKLAENERTAAVKASTDAIGKFRNQLEHDPRDFVANPDGKITVVEFFDYRCGYCK
                     LAAPQVVSLIEQNPDVRFVFKEFPIFGAVSDTAARVALTRPAKLKGVQLYKTLMAEKA
                     LDDAALDRHLAEAGIDPAAARKDAQHPLIERQILDTHALAEALKIDGTPAFIVGNTMI
                     PGADIPALRAAIAAARAKPEPTQSRS"
     gene            complement(1745..>2960)
                     /locus_tag="VHN39_15100"
     CDS             complement(1745..>2960)
                     /locus_tag="VHN39_15100"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HEX2817719.1"
                     /translation="HPCALIFAGAEGVAAAPGLMMVTTSLILQADNPNELQGVIAHEV
                     GHLAGGHAFRSGEYQRAGMVPMILTMGLGVLAAIAGAGDAAAGLITSAPYFGALGAAG
                     YGREQEARADQAGATYMEKAGLSGRGLAEFFDKYRYQEVFAQYRRYKFFIDHPLSSDR
                     IEALQFRVAALPHYNQKDSPEALSEHEIMKAKLDGFINPQVSLGKYDEKDMSYPARYA
                     RAIAYYQMKEPEKALKRVDALLVDQPNNPYLWELKGQIMFEFGQVEGAEAPQRRSVEL
                     KPDGPLLRVNLGQTLIAIGDKKKTEEGIAELKKALTQEPDNAVAWRILAEAYDKHGDE
                     GLARLATAEYEFNVGDMKQAREFAIRARERLPKDGPDWRRATDIVLVSKPSPDEIRAI
                     GREGSFVASPAH"
BASE COUNT          440 a          957 c         1037 g          526 t
ORIGIN      
        1 gtggcggtcg ccgggtcgac ccagggggtg agcccgggta gggccgcgca agctgcgtcg
       61 aaggtcgccg ggtcgacgat tttcttgcgc agttcctcct cgatctccgg cacgcacagc
      121 gtgatcgaga agcagccgtt gtcgccggga aagacgccga acttcagata ttccaggtcc
      181 ccggtcaggg gcgacgcgcc ccgttcgggc tcccccaacc cggggttcaa ccggtagtgg
      241 cgggtgaaat agaggatgcc gcagtcctcg gcctcctcgg ggatcaccgc accggcctcg
      301 cgaagccgct cgacggcgcc ggacgtccgc ccggccgcgt cgatcaccag gtcggcggtc
      361 aggtcatgct ggccctcggc gtcctccacc atgacgccga cgacggtcgg aaccggcccg
      421 ggtgcgaggc gcagcgcctt gacgaaggcg cccgagcgga tggtcacgtt cgcctgccgc
      481 tcgacgtagc ggcgcatgat cagttccagc gtggtgcgcc ggctggtgag caccgcaagg
      541 tcacggtcca cggggtcggg cacataagtc cgcttgtgaa tgtcggtcag tccgccctcg
      601 aaggtgaggt cgcggcaacc tgccgccatc agctcggcca ggagttcggg gtgttcgtcg
      661 cggatcagca ggcgcaggcg cgcgaggaag gcgtggctgt ggcgcaggtg accgacgccg
      721 cggcgtgtcc agccctcgaa ggcctcatcc ggtccgccct gcgggggcgg cggatcgcgt
      781 tccagcaggg tgacttcgcg gccggtcggc gccagcgcca gcgccgtcca gagcccggcc
      841 atgccggcgc ctatcaccag caccttttcc gccatcgtcc tcactccagc ccgccacgcg
      901 gcgcaagata ccccattgtc gtactgcccc ggggtcaagg gtggatgcgg ccggctagct
      961 gcggctttgc gtcggctcag gcttggccct ggccgcggcg atggcggcgc gcagggcggg
     1021 aatgtccgcg cccgggatca tcgtatttcc gacgatgaaa gccggcgttc catcgatctt
     1081 cagcgcctcg gccagcgcat gggtgtcgag gatctggcgt tcgatcaacg gatgctgcgc
     1141 atccttgcgg gcggccgctg ggtcgatgcc cgcctcggcc agatggcggt ccagggcggc
     1201 gtcatccaat gccttttcgg ccatcagggt cttgtagagc tgaacgccct tgagcttggc
     1261 gggccgcgtc agggccaccc tggcggcggt gtcggagacc gcgccgaaga tcgggaattc
     1321 cttgaagacg aaccgcacat cggggttctg ctcgatcagg ctcaccacct gcggcgcggc
     1381 cagcttgcag tagccgcagc ggtagtcgaa gaactccacc accgtaatct tgccgtccgg
     1441 attggccacg aagtcgcgcg ggtcgtgctc cagctgattg cggaacttgc cgatcgcgtc
     1501 tgtcgaggcc ttcacggccg ccgttcgctc attctcggcg agtttctccg ccgcctcgcg
     1561 gaccacctcg gggtgggcca tcagataggc gtgcacccgc tggccgaaga cggcgtcatc
     1621 ggtcttctgg caggcggaga gcgaaagggc ggcggcaagc gccgccaggg tgcgaagagc
     1681 aggggtcatg tgagccagat aggacggatt gcgggttttt gcgaggcgcc gatccggacc
     1741 ggcgtcagtg cgccgggctc gcgacgaagg agccttcccg cccgatcgcg cggatctcgt
     1801 ccggcgaggg cttggagacc agcacgatgt cggtggcgcg ccgccagtcg gggccgtcct
     1861 tcggcagccg ctcgcgggcg cggatggcga actcgcgggc ctgtttcata tcaccgacgt
     1921 tgaactcgta ttcggcggtg gcgaggcggg ccaacccctc atcgccgtgc ttgtcatagg
     1981 cctcggccag gatcctccag gcgacggcgt tgtccggctc ctgggttagc gccttcttca
     2041 gttcggcgat gccttcctcg gtcttcttct tgtcgccgat ggcgatcagg gtctggccga
     2101 gattcaccct cagaagcggg ccgtcgggct tcagttcgac ggagcggcgc tgcggcgcct
     2161 cggcgccctc gacctgaccg aactcgaaca tgatctggcc cttgagctcc cagaggtagg
     2221 ggttgttcgg ctgatcaacc aggagcgcgt ccacgcgctt gagggccttc tcgggctcct
     2281 tcatctggta gtaggcgatc gcccgagcgt agcgcgcggg ataggacatg tccttctcgt
     2341 cgtacttgcc gaggctgacc tgcggattga tgaagccatc gagcttggcc ttcatgatct
     2401 cgtgctcgga gagcgcctcg gggctgtcct tctgattgta gtgcggcagg gcggcgaccc
     2461 tgaactgcag cgcctcgatg cgatccgagg agagcgggtg gtcgatgaag aacttgtagc
     2521 ggcggtattg tgcgaagacc tcctgatagc ggtatttgtc gaagaactcc gcgaggccac
     2581 gaccggagag gccggccttc tccatgtagg tcgcgccggc ttgatcggcg cgggcctcct
     2641 gttcgcggcc gtaaccggcg gcgccgagcg ccccgaagta gggtgcgctg gtgatcagac
     2701 cagctgcggc gtcgccggcc ccagctatgg cggccagcac gcccagaccc atggtcagga
     2761 tcattggaac catgcctgcg cgttgatatt cgccggaacg gaaggcgtgg ccgccggcca
     2821 ggtggccgac ttcgtgggcg atgactcctt gaagctcgtt cgggttatcg gcctgcagga
     2881 tcaggctggt ggtgaccatc atcaagcctg gcgcggcggc cacgccttcc gctccggcga
     2941 atatcaacgc gcagggatgg
//
LOCUS       DATAJL010000796         4796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85049,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000796 DATAJL010000000
VERSION     DATAJL010000796.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4796
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85049"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..840)
                     /locus_tag="VHN39_15105"
     CDS             complement(<1..840)
                     /locus_tag="VHN39_15105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2817720.1"
                     /translation="MLQIKDLVFDAWGRRFFDQATVSLPKDAKVGLVGRNGVGKSTLF
                     KLILNQLVLGSGEIGMPRNARIGSVDQEHPATPVPLLDTVLAADIERATLLANLETAE
                     PEDLGDIYTRLIEIDADRAPSRAAEILAGLGFSNADLARPMAEFSGGWRMRVALAASL
                     FAAPDLLLLDEPTNYLDLEGALWLEARLKKYPHTAMVISHDRELLNNSVDHILHLKDG
                     KLDLYVGGYDSFELQVTEKLRLQEAMRVKIEAKRAHMQSFVDRFRAKASKATQAQSRL
                     KMIA"
     gene            1098..1517
                     /gene="ndk"
                     /locus_tag="VHN39_15110"
     CDS             1098..1517
                     /gene="ndk"
                     /locus_tag="VHN39_15110"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEX2817721.1"
                     /translation="MTERTFSIIKPDATKRNLTGKINAVIEDAGLRIVAQRRIRMTEA
                     QAKKFYEVHAARPFYGELVDFMMSAPVVVQVLEGAGAVAKYREVMGATNPADAAPGTI
                     RALYAENVGENSVHGSDSQENAALEIAQFFVEADIVG"
     gene            1585..1938
                     /locus_tag="VHN39_15115"
     CDS             1585..1938
                     /locus_tag="VHN39_15115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6481 family protein"
                     /protein_id="HEX2817722.1"
                     /translation="MREDKIGGFNERLSSQAEARRALLEKFKPKPTVQAEVLETRAQR
                     KAREVEEVRARRAADKEAALAKAEADKESARLALANNEEAQLELKRQDRKDRKAQAKA
                     EARAKREAKSAQRRG"
     gene            complement(2025..2237)
                     /locus_tag="VHN39_15120"
     CDS             complement(2025..2237)
                     /locus_tag="VHN39_15120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817723.1"
                     /translation="MVQYAVTLKDGDWTVFSDGQAIEHGLSRSAAVQMAKDMAFEAEE
                     RGDSVELLIQGYYGDLSRKLTGGAES"
     gene            complement(2275..2631)
                     /locus_tag="VHN39_15125"
     CDS             complement(2275..2631)
                     /locus_tag="VHN39_15125"
                     /inference="COORDINATES: protein motif:HMM:NF045268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0050898 - nitrile metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase accessory protein"
                     /protein_id="HEX2817724.1"
                     /translation="MSAPDSLSLPRLPRDAEGPVFDEPWQAQAFALALQLHAQGVFTW
                     TEWAGALSERLKAAGPEDDGSRYYEHWLATLENLVTAKNLAADAELHDRKHAWEAAYR
                     NTPHGRPVELGAEPLL"
     gene            complement(2618..3268)
                     /gene="nthB"
                     /locus_tag="VHN39_15130"
     CDS             complement(2618..3268)
                     /gene="nthB"
                     /locus_tag="VHN39_15130"
                     /EC_number="4.2.1.84"
                     /inference="COORDINATES: protein motif:HMM:TIGR03888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018822 - nitrile hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0050898 - nitrile metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase subunit beta"
                     /protein_id="HEX2817725.1"
                     /translation="MNGVHDMGGMENLGPIAPEVDEPVFHHAWESRVHALSVASPTRR
                     NIDEGRHQREKIPGPEYLAMTYYEKWFRGLSELLVAHGYVAPAEMASGKATPGAAKAT
                     PVLFAAEVATRFARTGSYVREAALPLFAEGDAVRARNLNPHGHTRLPRYVRGRKGVIL
                     ARRGAHVFPDSHAHCKGEDPRPLYTVRFAARELWGEAANPRDSVCLDLWEPYLERA"
     gene            complement(3279..3908)
                     /gene="nthA"
                     /locus_tag="VHN39_15135"
     CDS             complement(3279..3908)
                     /gene="nthA"
                     /locus_tag="VHN39_15135"
                     /EC_number="4.2.1.84"
                     /inference="COORDINATES: protein motif:HMM:TIGR01323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018822 - nitrile hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0050898 - nitrile metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrile hydratase subunit alpha"
                     /protein_id="HEX2817726.1"
                     /translation="MGHFPPMAHDHHDHDNDQGQQPPSDMALRVKALESLMVEKGLVD
                     SAALDAIVDHFEHRVGPRNGARVVARAWTDPAYKARLMADATTAIAELGYAGGQGDHM
                     VVVENTAVIHNLVVCTLCSCYPWPVLGLPPVWYKSAPYRSRAVIDPRGVVAEFGTRLP
                     DDIEVRVWDSTAELRYLVLPERPSGTEGLDEDALAALVTRDGMIGTSRL"
     gene            4004..4642
                     /locus_tag="VHN39_15140"
     CDS             4004..4642
                     /locus_tag="VHN39_15140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX2817727.1"
                     /translation="MAAPHLIYFSDPMCSWCYGFSPVIEDIRRTFGRALPIRVVMGGL
                     RPGTETPMTEEAKLEIADHWTHVHEATGLPFNGAGMSRPGFVYDTDPAARAVVVARRD
                     GEEMAAAFFTRAQQAFYAEGRDVTTAQVLGDLAEELGLDREPFLDLWAQEEAKEETWR
                     DYAISQRAGVTGFPTLVAGPNAEGVYGVVTRGFAPAEQVLTILKEWLERIAA"
BASE COUNT          788 a         1576 c         1659 g          773 t
ORIGIN      
        1 ggcgatcatc ttcaggcgcg actgggcctg ggtggctttc gaagccttgg cgcggaagcg
       61 gtccacgaag gactgcatgt gggcccgctt ggcctcgatc ttcacccgca tggcttcctg
      121 caggcgaagt ttttcagtca cttgcagctc gaagctgtca tagccgccga cgtagaggtc
      181 gagcttgccg tccttcaggt ggaggatgtg atccaccgag ttgttcaaga gctcgcggtc
      241 gtggctgatc accatggcgg tgtgcgggta ttttttgagc cgcgcctcaa gccagagcgc
      301 gccctccagg tcgagatagt tggtgggctc gtcgagcagc agcaggtcgg gcgcggcgaa
      361 cagcgaggcg gccagcgcca cccgcatccg ccagccgccg gagaactccg ccatcggccg
      421 cgccaggtcg gcgttggaaa agcccaggcc ggccaggatt tcggccgcgc ggctgggcgc
      481 ccggtcggcg tcgatctcga tcaagcgcgt gtagatgtcg cccaggtctt ccggctcggc
      541 ggtctccagg ttcgccagca gggtcgcgcg ctcgatatcg gcggccagca cggtgtccag
      601 cagcggcacg ggcgtcgccg gatgctcctg gtccaccgaa ccgatgcggg cgttgcgcgg
      661 catgccgatc tcgcccgagc ccaggacgag ctggttcagg atcagcttga agagggtcga
      721 cttgcccacg ccgttgcggc ccaccagacc caccttggcg tccttgggca ggctgacggt
      781 cgcctggtcg aagaaccggc ggccccaggc gtcgaaaacg agatctttga tctgaagcat
      841 ctgacgggaa tcgcgaaacg gggcgcggac cagcgcttcg ccggacctgc gggaggaagg
      901 gatgggtcag ggatgaaaag ccgcgccgcc gcctgaccgg gcgggtccat agcagaccga
      961 cacgcccgcg tcatgccgat cagttaggca gtgttgcagc gcagcgcctt ggcgatccgc
     1021 ggcgaggcgg gtatagagcc cgccacctcg cggcgcgctg cgccaatttc catccgtcct
     1081 gagacgtaaa gagacccatg accgaacgca ccttctcgat catcaagccg gacgccacca
     1141 agcggaacct gaccggcaag atcaacgcgg tgatcgaaga cgcgggcctg cgcatcgtgg
     1201 cccagcgccg catccgcatg accgaggccc aggcgaagaa attctacgaa gtccacgccg
     1261 cccgcccgtt ctacggcgag ctggtcgatt tcatgatgtc ggcccctgtg gtggtgcagg
     1321 tccttgaagg cgcgggcgcc gtcgccaaat accgtgaagt catgggcgcg accaatccgg
     1381 ccgacgccgc gccgggcacc atccgcgctc tctatgccga gaacgtcggt gagaactcgg
     1441 tccatggctc cgacagccag gagaacgccg cgctggagat cgcgcagttc ttcgtagaag
     1501 ccgacatcgt cggctgaggc ctgcaaccaa caaccgcctg gcggggtttc tcccgcctga
     1561 catccaatcc attcgaaagt cgcgatgaga gaagacaaga tcgggggctt taacgagcgc
     1621 ctcagttccc aggccgaagc ccgtagggct ctgctggaaa agttcaaacc gaaacccacg
     1681 gtgcaggccg aagtccttga gacccgcgct cagcgcaagg ctcgggaagt cgaggaagtc
     1741 cgcgccaggc gggccgccga caaggaggcc gcgcttgcga aggccgaggc cgataaggaa
     1801 tctgcgcgtc tggcgctcgc caacaacgaa gaggcgcagc tcgagctgaa gcgccaggac
     1861 cgcaaggacc gcaaggctca ggccaaggcc gaagctcgcg ccaagcgcga ggccaagtcc
     1921 gcccagcggc gcggctagtt cgcgccgctt cttccttcgc gagagatggg gcgcggctag
     1981 tccgcgccgc ttcttccttc gcaaaaagag cgggcgaaac tgaactagct ctcggctccg
     2041 ccggtcagtt tgcgggacag gtcgccgtag tagccctgga tcagcagttc gacgctgtcg
     2101 ccgcgttcct cggcctcgaa ggccatgtcc ttggccatct ggacggcggc ggagcggctg
     2161 agtccgtgct ctatggcctg gccgtctgag aagacggtcc aatcgccgtc cttgagcgtc
     2221 accgcgtatt gaaccatggc cgccgagttc ctcgcttaag cttgagcgtt cgagctacag
     2281 caaaggttcc gcgccgagct ccacgggccg cccgtgcgga gtgttgcggt aggcggcctc
     2341 ccaggcgtgc ttgcggtcgt gcagctccgc gtccgccgcc aggttcttcg cggtgaccag
     2401 gttctccagc gtcgccagcc agtgctcgta gtagcgcgaa ccgtcgtcct cgggtccggc
     2461 ggccttcagg cgctcggaga gcgctccggc ccactccgtc caggtgaaaa cgccctgcgc
     2521 gtgcagctgc agggcgagcg cgaaggcctg cgcctgccag ggctcgtcga acacgggccc
     2581 ttcggcgtcg cgcggcaggc ggggcaggct cagggaatca ggcgcgctca agatagggct
     2641 cccagaggtc caggcagacg ctgtcgcgcg ggttggcggc ctcgccccac agttcgcggg
     2701 cggcgaaccg cacggtgtag agcggccgcg ggtcctcacc cttgcagtgg gcgtgggagt
     2761 ccgggaacac gtgcgccccg cgcctggcga ggatcacgcc cttacggccg cgcacataac
     2821 ggggcagccg ggtgtggccg tgcgggttga gattgcgggc ccgcacggcg tcgccttcgg
     2881 cgaacagggg cagggcggcc tcgcggacgt aggagccggt gcgggcgaac cgcgtggcga
     2941 cctcggcggc gaacagcacg ggtgtggcct tggcggcgcc gggggtggcc ttgcccgagg
     3001 ccatctccgc cggcgcgaca tagccgtggg cgaccagcag ctcgctcagg cccctgaacc
     3061 acttctcgta gtaggtcatg gccagatatt caggcccggg aatcttctcg cgctggtggc
     3121 gaccctcgtc gatgttgcgg cgggtgggcg aggcgacact gagtgcgtgg acgcgggact
     3181 cccaggcgtg gtggaagacc ggctcatcaa cctccggcgc gatcggccca aggttctcca
     3241 tgccccccat gtcgtgaacg ccgttcacag ccgccccctc atagccggga tgtcccgatc
     3301 atcccgtccc gcgtgaccag ggcggcgagc gcgtcttcgt ccaggccctc ggtcccggat
     3361 ggtcgctcgg gcagcaccag gtagcgcagc tccgcggtgg aatcccagac ccggacctcg
     3421 atgtcgtcgg ggagtctcgt gccgaattcg gcgaccacgc cgcgtgggtc gatcaccgcg
     3481 cgtgagcggt acggcgcgga cttgtaccag accggcggca ggcccagcac cggccacggg
     3541 taacaggagc atagggtgca gacgacgagg ttgtggatca cggccgtgtt ctccaccacg
     3601 accatgtggt cgccctggcc gccggcgtag ccgagctcgg cgatggcggt ggtggcgtcg
     3661 gccatcaggc gggccttgta ggcagggtcg gtccaggcgc gggccaccac gcgggcgccg
     3721 ttgcgcgggc cgaccctgtg ctcgaagtgg tcgacgatgg cgtccagggc ggccgaatcg
     3781 accaggccct tctcgaccat cagcgattcc agcgccttta cccgaagcgc catgtccgag
     3841 ggcggttgct ggccctgatc attgtcgtgg tcgtggtggt cgtgcgccat gggcggaaag
     3901 tggcccatct gctcgcaaag gtgaaggcgc gccaaaaggt gaagcgcggg caggtgacca
     3961 agccgctgtc tcctgcaatg cttggcgcct ggaggtcttc gtcatggccg cgccccacct
     4021 gatctacttc tccgacccca tgtgctcctg gtgctacgga ttctcgccgg tcatcgagga
     4081 tatccgccgc accttcggcc gcgccttgcc gatccgcgtg gtgatgggcg gcctgcgtcc
     4141 cggcacggag acgccgatga ccgaagaagc caagctggag atcgccgacc actggaccca
     4201 cgtccacgag gcgaccggcc tgccgttcaa cggcgccggc atgtcacgtc ccggcttcgt
     4261 ctatgacact gacccggcgg cccgtgcagt ggtcgtcgcc cggcgcgacg gcgaggagat
     4321 ggccgcggcc ttcttcacgc gcgcgcagca ggccttctac gccgagggcc gcgatgtcac
     4381 gacggcccag gtgctgggcg acctggccga agagctcggc ctcgaccgtg agcccttcct
     4441 ggatctctgg gctcaggagg aggccaagga agagacctgg cgagactacg ctatctccca
     4501 gcgggcgggc gtcaccggat tccccacgtt ggtcgccggg cctaacgccg agggcgtcta
     4561 tggcgtggtc acccgcggct tcgcgcccgc cgagcaggtt ctgactattc tcaaggagtg
     4621 gctggagcgg atcgcggcct gacgagggtt tgaccagcaa gaattacgca tgtaataatc
     4681 cgctgacggt cgggcgttgc gacgtcgcgc gaaggatccg taacatgcgt ggatggtcag
     4741 ttggattgac gatggcggcc ctggtcgcga gccttgcggt cgccctgacc tcgcaa
//
LOCUS       DATAJL010000797         1728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71647,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000797 DATAJL010000000
VERSION     DATAJL010000797.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71647"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..599
                     /locus_tag="VHN39_15145"
     CDS             <1..599
                     /locus_tag="VHN39_15145"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2817728.1"
                     /translation="RGSERGASRLRLLDAAEACLLRDGYAALSTRAVADAAAMPLSQI
                     HYHFGSKQGLVLALLEHQNLKLLERQAAMLGQDAPASARWFQACDFLDDDIESGYVRV
                     LQEIIAAGYSEPELADAARTLLSGWFVLLAQFGEDLRRALKGFETASAAEVGALAGML
                     FMGAESMILIDMDMPIREALRAVGRALQAGEEELANAR"
     gene            589..>1728
                     /locus_tag="VHN39_15150"
     CDS             589..>1728
                     /locus_tag="VHN39_15150"
                     /inference="COORDINATES: protein motif:HMM:NF012770.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2817729.1"
                     /translation="MRAEVPVAEGYVTRDGVRIAYEVYGETGPTLVLLPCWIIVHDRS
                     WKAQIADLTKDCRLVVIDGRGNGRSDRPAGWENYTFEAYADDALAVMDHLGVGPCVLF
                     GYSRGGPQAALIAQQRPEQVEALVLIAPVAPATDDELAARSAAFCAPYDPALGWYNAD
                     LIRQDYPGFLRSFFETMFLEAHSTKQVEDAVGWALETSPAALIDSTLGAFASGPDLAA
                     AYAAIGCPTLLIHGVQDRIVPIAAGRKVAALARAETIEVAGSGHGPHLRFPAHVNGRI
                     RDFLVRTGLLAPPPASPSRRRKAAPRALYLSSPIGLGHARRDLAVARALKGLKPGLEI
                     DWLAQDPVTRLLAAAGETLHPASAGLASESSHIEDEAGEHDLNVFE"
BASE COUNT          244 a          650 c          592 g          242 t
ORIGIN      
        1 ggcgaggatc ggagcgcggc gcgtcgcggc tgcggctgct ggacgccgcg gaggcctgcc
       61 tgctgaggga cggctatgcg gccctgtcga cgcgagccgt cgccgacgcg gcggccatgc
      121 cgctcagcca gatccactac catttcggct ccaagcaggg cctcgtcctg gccctcctgg
      181 agcaccagaa cctcaagctg ctggagcggc aggcggcgat gctggggcag gatgcgcccg
      241 cctcggcccg ctggttccag gcctgcgact tcctggatga cgacatcgag agcggctacg
      301 tccgcgtgct gcaggagatc atcgctgcgg gctacagcga gcccgaattg gccgacgccg
      361 cacggaccct gctctccggc tggttcgtgc tgctggcgca atttggcgaa gacctccgaa
      421 gagcgctgaa gggcttcgag accgcgagcg ccgccgaggt cggggctctc gccggaatgc
      481 tcttcatggg cgcggaatcg atgatcctga tcgacatgga catgccgatc cgcgaggcgc
      541 tcagggccgt cggccgcgcc ctgcaggccg gcgaagagga gctggccaat gcgcgctgaa
      601 gtccccgtcg cggagggata cgtcacccgc gacggcgtcc gcatcgccta cgaggtctat
      661 ggcgagaccg gccccaccct ggtcctgctg ccctgctgga tcatcgtgca tgaccgcagc
      721 tggaaggcgc agatcgccga cctgacgaag gactgccgcc tggtggtcat cgacgggcgc
      781 ggcaacggca ggtcggaccg tcccgccggc tgggagaact acaccttcga ggcctacgcc
      841 gacgacgcgc tggcggtgat ggaccacctg ggcgtcgggc cgtgcgtgct gttcggctac
      901 tcccgaggtg gaccccaggc ggcgctgatc gcccagcagc ggccggagca ggtggaggcc
      961 ctggtgctga tcgccccggt ggcgccggcc acggacgacg agctcgccgc caggagcgcc
     1021 gccttctgcg cgccctacga ccccgccctg ggctggtaca acgccgacct catccggcag
     1081 gactatcccg gcttcctgcg gtccttcttc gagaccatgt tcctggaggc ccactccacc
     1141 aaacaggtcg aggacgcggt cggctgggcc ctggagacca gccccgcggc gctgatcgac
     1201 agcacgcttg gcgccttcgc gagcggcccg gacctcgccg ccgcctacgc cgccatcggc
     1261 tgcccgaccc tgctcattca cggcgttcag gaccggatcg tgccgatcgc ggcgggccgc
     1321 aaggtggccg ccctcgcccg cgccgagacg atcgaggtcg ccggctccgg ccacggcccg
     1381 cacctgcgct tcccggccca tgtgaacggc cggatccgcg acttcctggt ccggaccggc
     1441 ctcctggcgc cgccccccgc gtcgcccagc cgccgccgca aggccgcccc ccgcgcgctc
     1501 tacctctcct cgcccatcgg tttgggccat gcccgccgcg acctcgccgt cgcccgcgcc
     1561 ctgaagggcc tgaagccggg cctggagatc gactggctgg cgcaggatcc cgtcacccgc
     1621 ctgctggccg cggccggcga gaccttgcac ccggccagcg cgggcctcgc cagcgaaagc
     1681 agccacatcg aggacgaggc cggcgagcac gacctcaacg tcttcgag
//
LOCUS       DATAJL010000798         1557 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85086,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000798 DATAJL010000000
VERSION     DATAJL010000798.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1557)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85086"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            203..955
                     /locus_tag="VHN39_15155"
     CDS             203..955
                     /locus_tag="VHN39_15155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008263690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX2817730.1"
                     /translation="MPKILRWGPYNDWQGWLRGLVIALAAAIFLAFGGAFGSASATLP
                     VRLAYWVGLMIVGWVWGGFVSRTFFRRPGRSQRLWLRIILSAIAVSIPYSIVVALVGI
                     YAMGSHYDLVDIPDLVLKVTAISAVMIAINVLAERQSVTSAGTQPAKFLERLPLKLRG
                     GEVWAVEAEDHYLRLHTSKGQDLILMRLSDAIDELEGIEGAQVHRSWWVARDAITEAV
                     RGDGRATLTLKDGAEVPVSRTYARLLRERRWI"
     gene            complement(973..1533)
                     /locus_tag="VHN39_15160"
     CDS             complement(973..1533)
                     /locus_tag="VHN39_15160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817731.1"
                     /translation="MFAPAPTLETDRLILRAPAAEDFEPWAAFAADEEAMRHLGGVQA
                     RSVAWRGICQVAGAWAIRGFSMFSVIEKSSGRWVGRLGPWQPEDWPGTEVGWGLARDV
                     WGRGYATEGASACMDYVFDVLGWREAIHTIEPANLASQAVAKRLGSTLLGPTRMPPPY
                     QDSVVESWGQSREQWRARRAQVIAPR"
BASE COUNT          223 a          538 c          551 g          245 t
ORIGIN      
        1 gaagaggggg cgggcgccag ggtgaatcgg tcgctgttat gccccgccac ggtggccgaa
       61 gctaggcggg gccccaaggc gcccggcgaa gggggcgccg gcaagcgttt gagaaaccgg
      121 cgacatcctc tatctgcgga gcgggcggcc cccttggggt tcgctggtgg aagagccgcg
      181 gagcgaacgg ccgatggcgt cgatgccgaa gatcctgcgc tgggggccct acaacgactg
      241 gcagggctgg ctccgcggcc tagtcatcgc gctcgccgcc gccatcttcc tggccttcgg
      301 cggcgccttc ggttcggcca gcgccaccct gccggtgcgc ctcgcctact gggtgggcct
      361 gatgatcgtg ggctgggtct ggggcggctt cgtcagccgc accttcttcc gccgccccgg
      421 ccggtcccag cgcctgtggc tgcggatcat cctgtcggcg atcgccgtgt cgattcccta
      481 ctccatcgtc gtggccctgg tggggatcta cgccatgggc tcgcactacg atctcgtcga
      541 catcccggac ctagtcctga aggtgaccgc gatctcggcg gtgatgatcg ccatcaacgt
      601 gctggccgag cggcagagcg tcacctcggc cgggacccag ccggcgaagt tcctggaacg
      661 ccttcccttg aagctgcgcg gcggcgaagt ctgggcggtg gaggccgagg atcactatct
      721 gcgcctgcac acctccaagg gccaggacct gatcctgatg cggctgtccg acgccatcga
      781 cgagctggag gggatcgagg gcgcccaggt gcaccgctcc tggtgggtgg cgcgcgacgc
      841 catcaccgag gccgtccgcg gcgacggccg cgcgacgctc acgctaaagg acggcgccga
      901 ggtcccggtg agccgaacct atgcgcggct gctgcgcgag cggcgctgga tctagcaaat
      961 tcctgctttc ggtcatcgcg gcgcgatgac ctgggcgcgt ctcgcccgcc actgctcgcg
     1021 gctctggccc caggattcga caacgctgtc ctgatagggc ggcggcatcc gcgtcggccc
     1081 gagcagtgtc gaaccgagcc gtttggcgac cgcctgggag gccaggttgg ccggctcgat
     1141 ggtgtggatc gcctcgcgcc agccgaggac gtcgaagacg tagtccatgc aggcgctcgc
     1201 cccttcggtg gcgtagcccc tgccccagac gtcgcgggcc agcccccagc cgacctcggt
     1261 ccccggccag tcctccggct gccagggccc cagccgtccg acccagcggc cggaagattt
     1321 ctcaatgacc gagaacatcg agaagccgcg gatcgcccag gcgccggcga cctgacagat
     1381 gccccgccag gcgacggaac gggcctggac cccgcccaga tggcgcatgg cctcctcgtc
     1441 ggcggcgaag gcggcccagg gctcgaagtc ctccgcggcg ggggcccgga gaatgaggcg
     1501 atctgtctca agagttggcg ctggcgcgaa catcgatttt ctggctctaa tgcgggt
//
LOCUS       DATAJL010000799         2304 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97871,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000799 DATAJL010000000
VERSION     DATAJL010000799.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2304)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2304)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2304
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97871"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1143)
                     /gene="trmFO"
                     /locus_tag="VHN39_15165"
     CDS             complement(<1..1143)
                     /gene="trmFO"
                     /locus_tag="VHN39_15165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007664078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate--tRNA-(uracil(54)-
                     C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO"
                     /protein_id="HEX2817732.1"
                     /translation="MTASPVHVVGGGLAGSEAAWQIAQAGVPVVLHEMRPVRGTDAHQ
                     TDRLAELVCSNSFRADDWTGNAVGLLHAEMRRLGSIILACGDAHQVPAGGALAVDRDG
                     FAQAVTERLEAHPLVTIAREEVAGLPPAAWDSVIVATGPLTSPALSEAILGLTGEGAL
                     SFFDAIAPIIHLESVDMGVAWRQSRYDKEGPGGDAAAYINCPMDRGQYEAFIDALLAG
                     PKSEFKDWEHVPYFDGCLPIEVMAERGRETLRHGPMKPVGLTNEHDPQTKAWAVVQLR
                     QDNALGTLWNMVGFQTKLKHGAQTDIFRTIPGMEKAVFARLGGLHRNTFLNSPKLLDG
                     SLRLKADPRMRFAGQVTGVEGYVESAAIGLLAGRFAAAERLGQAATP"
     gene            1203..2204
                     /locus_tag="VHN39_15170"
     CDS             1203..2204
                     /locus_tag="VHN39_15170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817733.1"
                     /translation="MSPNLASKGEADSFLLLWGRALGTRMSGFKPADAALEGFRITRE
                     NPRAFGAWIGASFFFSVLAIIVDAVMPPGVRQGLASLNADQTLTPRQLVDTLVLAAPV
                     LIFALAVLSITSAAVYRLIFRHDDARFGYLRLGADELRLMGLTVICFGLAIILVVAVS
                     LIGGTALSILALAAPDAANALRWPTALLSLAIVGAILVRLSLAPVATFAERRITVFES
                     WGLTRGYFWPLLGAYALALACIVVIGILILIVFTLVAGAVLVATGGQLSDVGLMLKPQ
                     DSSLKSYLSVGIIAYMIVSSIFSALWNAVIAAPGAVAYAQLHGAPPSRPLAAQPEAG"
BASE COUNT          327 a          768 c          789 g          420 t
ORIGIN      
        1 gggcgtggcg gcctggccca gccgctcggc ggcggcgaag cggccggcca gcagcccgat
       61 ggcggcgctc tcgacgtagc cttcgacgcc cgtcacctga ccggcgaacc gcatccgcgg
      121 atcggccttc aggcgcagcg acccgtccaa cagcttggga ctgttcagga aggtgttgcg
      181 gtgcaggccg ccgaggcggg cgaacaccgc cttttccatg cccgggatcg tccggaagat
      241 gtcggtctgg gcgccgtgct tcagcttggt ctggaagccg accatattcc agagggtgcc
      301 cagcgcgttg tcctgcctga gctggacgac cgcccaggcc ttggtctgcg gatcgtgctc
      361 gttggtcagg cccaccggtt tcatcggccc atggcgcagg gtctcgcggc cgcgctcggc
      421 catcacctcg ataggcaggc agccatcgaa ataggggacg tgctcccagt ccttgaactc
      481 ggacttgggc ccggccagca gcgcgtcgat gaaagcctcg tactgcccgc gatccatggg
      541 gcagttgatg taggccgccg cgtctccgcc ggggccttcc ttgtcgtagc gcgactggcg
      601 ccaggcgacg cccatgtcga cgctctcgag gtggatgatc ggggcgatgg cgtcgaagaa
      661 cgagagtgcg ccctcacctg taagccccag gatagcctcg ctgagcgccg gcgaggtgag
      721 ggggccagtg gcgacgatga cgctgtccca cgccgcgggc ggcaggccgg ctacctcctc
      781 gcgggcgatg gtgaccagag ggtgggcctc cagtcgttcc gtcaccgcct gggcgaagcc
      841 gtcgcgatcg accgccagcg ccccgccggc cgggacctga tgggcgtcgc cgcaggccag
      901 aatgatcgag cccagtctgc gcatctccgc atgcaacagg cctacagcat tgccggtcca
      961 gtcgtcggcg cggaaggaat tggagcagac cagctcggcc agtcggtcgg tctggtgagc
     1021 gtcggtgcca cgcacgggcc gcatctcgtg cagcaccacg gggacgcccg cctgggcgat
     1081 ctgccaggcg gcctcggagc cggccaggcc gccgcctacg acgtgtacgg gagatgctgt
     1141 catgcgtggc taactagcaa cgatccggcc agatcgcgag cggggccttg cacgtgagag
     1201 gggtgagccc caaccttgca tccaaagggg aggccgactc gttcctgcta ctgtggggtc
     1261 gggccttagg gacgaggatg tcggggttta agcccgccga tgcggcgcta gaaggatttc
     1321 ggatcacacg ggagaacccg cgggcgttcg gcgcgtggat cggggcgtcc ttcttcttca
     1381 gcgttctggc catcatcgtc gatgcggtga tgccgcctgg cgtcaggcag ggcttggcgt
     1441 ctctcaacgc cgatcagaca ctgacaccac gtcagctcgt ggacaccctg gtgcttgcgg
     1501 cgcccgtgct gatctttgcg ctggccgtgc tgagcatcac ctcggccgcc gtctaccggc
     1561 tcatcttccg ccacgacgac gcccgtttcg gctatctgag gctgggcgcg gacgaattgc
     1621 gcctcatggg gctgacggtc atctgctttg ggctcgccat catcctcgtg gtggccgtca
     1681 gcctgatcgg gggaacggcc ttatcgatcc tcgccctggc ggctccggat gccgcgaacg
     1741 ctttgcggtg gccgacggcg ctgctctcgc tcgccatcgt gggcgccatc ctggtgcggt
     1801 tgtcattggc gccggttgcg acctttgccg agcggcggat caccgtgttc gaatcctggg
     1861 gccttacccg gggctacttc tggccgctgc ttggcgcata cgccctggcg ctcgcctgca
     1921 tcgtggtcat cggcatcctg attctgatcg tgtttacgct ggtcgccggc gcggtgctgg
     1981 tcgctaccgg cgggcagcta tcggacgtcg gcctgatgct aaagccgcag gacagctccc
     2041 tgaagagcta cctcagcgtc ggcatcatcg cctacatgat cgtctcaagc atcttttcgg
     2101 ccttgtggaa cgccgtgatc gcggcgcctg gggccgtagc ctacgcccaa cttcatggcg
     2161 cgccgccgag ccgtccgctc gccgcccaac ccgaggcggg ttgaaccccc tccgatgaac
     2221 agcttttcgc caagcgacgc ggccctggat ggcttccagg tgatccggac gcagtggcgc
     2281 gtggccctgg gctggtgcct gttc
//
LOCUS       DATAJL010000800         5435 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_109378,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000800 DATAJL010000000
VERSION     DATAJL010000800.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5435
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109378"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            29..832
                     /locus_tag="VHN39_15175"
     CDS             29..832
                     /locus_tag="VHN39_15175"
                     /inference="COORDINATES: protein motif:HMM:NF039710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6270 domain-containing protein"
                     /protein_id="HEX2817734.1"
                     /translation="MSRVAIVGSCITRDLWRFRGGTVAKTAPSPSIPMLYVSRTSLPS
                     LFATPLAGFKAATKPPGGLKPQPHRALIADLCKTALASLVAFRPTHLIFDFIDERFDL
                     LAAGGTLVTDSWELEASGYRRQPALRVARAIPRLSAACERLWLEAAAETAAFVRATPL
                     AEATLILHSARWATRRRNAQGRDAAVGDVEILPGSRADIGAHNDLLARYEAAFTKLMP
                     TMSRVEAPDHRTADDRHEWGLSPFHYTPDYYAEIWRQLAGLGVAERIAA"
     gene            complement(900..1454)
                     /locus_tag="VHN39_15180"
     CDS             complement(900..1454)
                     /locus_tag="VHN39_15180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817735.1"
                     /translation="MLGEIAELGLMVAKELAARLRESEDVDQTVALAGAFQKVSRVVR
                     LTLALDFKLERDAARDARDAACETEAAEAEAARQGRVEAACAAPGPIAARKTRVSNLL
                     NRLIWNECEGDSEDYEVLFDDLSARLDEAARSDDFETLPIEVLAGRVIADMGLSGELT
                     LSLTETPAGDAQAPQRTPEPADTG"
     gene            complement(1565..2791)
                     /locus_tag="VHN39_15185"
     CDS             complement(1565..2791)
                     /locus_tag="VHN39_15185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817736.1"
                     /translation="MAKTVAPSPKPAEARPTEVARKAAAVAKKVAGLRADLGLAHGLV
                     HEAQIREALTRTELTLALGEALKGRAQALAGERRLAVQRHLATSSPRPVRRRGRAQRG
                     FDRLMLAAGLAGHARLIADAGVWRGGDLTEMAVYVRRRTDPTAAPATLFDQAWYLETY
                     PEAAASGLAPLVHYLVRGAATGKNPHPLMHADYYVGQNAAALSASQVSPLEHFVREGA
                     ARGRNPHPAFDVLHYAAQGPQLAPDEDPASHYLRTGWRDGLSPHPLFDPAWYRRQMPR
                     QAAEIPPLVHYLTIGWREGLSPHPLFDPRWYVEQNPDVAEIGAEPLTHFLTGGAAEGR
                     SPSAWFDLPHYVAARGEALDPAVNPLVDYLAGGAWSVAEARPGFPTAAYLAQSPELVG
                     QGMTPLEHWARKAARP"
     gene            complement(2909..3946)
                     /locus_tag="VHN39_15190"
     CDS             complement(2909..3946)
                     /locus_tag="VHN39_15190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817737.1"
                     /translation="MKVLCYSSFTFSYLNRARVLFQTLRRFHPEWELVALITDRPPAG
                     FRFDPGKEPFDRVVWAEDLGIPDFQAWLFKHDVVEVCTAVKGPFIHQACSQAGIGGAD
                     AVIYLDPDTALFASLAPLEAWLEDHDILLTPHLIDPNDTAEAIADNDLSASRTGIFNL
                     GFVAIRTTGEGARFAKWWNDRLLDWCYDDMPMGLFVDQRWCDHVPALFDKVKVVRDPG
                     YNVASWNLSTRTVAVQKDGQVTVNGAPLRFWHFTKLGPMGDAMTKKYGGTNFPVYEVW
                     SWYKRQVTKATDAAIPERWWAYGAYTDGTPIEKRHRVLYRQRADLQMAFPDPFMAGEG
                     GYSQWLEREGL"
     gene            complement(3943..>5435)
                     /locus_tag="VHN39_15195"
     CDS             complement(3943..>5435)
                     /locus_tag="VHN39_15195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817738.1"
                     /translation="AKSGVDPLDHFLSGGWREGRDPNAAFSVKDYLESYPDIAEAELN
                     PFVHFLSAGRAEGRTGRAELGFRYEIIKRLVPLEAKIAAVARASAKLKLGTAAALTKA
                     LAGSKTQLRDLHVTFSHDDYTANTGGVQLCLQREGARIAELGRDHLHLYPAKPWPVVR
                     VRGEAGHLGVLLNGKAVGVFAPRTIAGVLGKAAGAVKAGQRSFAIHSLLGHAAGETAD
                     IAAAAGLKAGFFWLHDFASLCAGFHLLRNDVEDCSAPPPGSQACGICVYGPWRARHVA
                     EHERLFERLSLTVVSPSQPTLDLWKATAAYPTAGLVVLPHARLVERGPAPKAPADRPL
                     RIAYAGMPAAHKGWEIFRDLAVKHADDPRYHFLHLGGRPQPGLALEFHKVTVTDDRPR
                     AMQEAIEKHQADAVLIWPLCRETFSFIAYEAVAAGAAIIAGPDSGNVAAFVAAGGHGL
                     VLDGEDALARAFETGEVASLARSVRKPALYDLAFSALTVDLLEGPA"
BASE COUNT          804 a         1851 c         1952 g          828 t
ORIGIN      
        1 caaatcggcg ccagcgccgg gagttgggat gtccagggta gccattgttg gcagctgcat
       61 aacccgtgat ctatggcggt tccgtggcgg gaccgtcgcg aagacggcgc cgagtccttc
      121 gatccctatg ctctacgtgt cgcggaccag cctgccgagc ctttttgcca cacccctggc
      181 cgggttcaag gccgccacca agccgccggg cggcctgaaa ccccagccgc accgggcgct
      241 gatcgccgac ctctgcaaga ccgcgctggc gagccttgtg gcgtttcgcc cgacccatct
      301 gatcttcgat ttcatcgacg agcggttcga cttgctggcg gccggcggga ccctggtcac
      361 cgacagctgg gagctggagg ccagcggcta ccgccgccag cccgccctgc gcgtcgcgcg
      421 cgcgattccg cgcctctccg ccgcctgcga gcggctgtgg ctggaggccg ccgccgagac
      481 cgcggccttc gtccgcgcca cgccgttggc cgaggccacg ctgatcctgc actccgcccg
      541 ctgggcgaca cgtcggcgca acgcccaggg gcgcgacgcg gcggtgggag acgttgagat
      601 cctgccggga agccgcgccg acatcggcgc gcacaacgac ctgctggccc gttacgaggc
      661 ggcgtttacg aagctcatgc cgaccatgtc gcgcgtcgag gcgcctgacc atcggacagc
      721 cgacgaccgc cacgaatggg ggctcagccc cttccactac acgccggatt attacgccga
      781 gatctggcga cagctcgcgg gcctgggcgt cgcagagcgg atcgccgcct aggttgaaga
      841 ctcaattctt cgcccctcta caagctgttg atatttctca gctataatgg gagctcagcc
      901 tagcccgtat ccgccggctc gggcgtccgt tgcggcgcct gggcgtcccc ggccggcgtc
      961 tcagtaaggc tgagggtcag ctcgccggag aggcccatgt cggcgatgac gcggccggcg
     1021 aggacctcga tggggagcgt ctcgaagtcg tcgctgcggg cggcttcgtc gaggcgggcg
     1081 gagaggtcgt cgaacagcac ctcatagtct tcgctgtcgc cctcgcactc gttccagatg
     1141 aggcggttga gcaggttgct gacacgggtc ttgcgcgccg cgattggccc gggcgcggcg
     1201 caggcggcct cgacgcggcc ttgtcgggct gcctcagctt cagccgcctc agtttcgcag
     1261 gccgcgtccc gcgcatcgcg cgcggcgtcg cgttccagct tgaagtccag cgccagggtc
     1321 aggcgcacca cgcgggagac cttctggaag gcgccggcca gcgccacggt ctggtccacg
     1381 tcctcgctct cgcgcagtcg cgcggcgagt tccttggcga ccatcaggcc gagctcggcg
     1441 atctcgccca gcatggcctc cgcgcgggcc cgcttttccg tttgacacga catggaacaa
     1501 aaggagaaca tacgagaggc tgggagtcaa gttttatcgt gcttggtccg tcaaggcgca
     1561 gaacctaggg cctggcggcc ttgcgcgccc agtgctcgag cggggtcatg ccctggccga
     1621 ccagttcggg gctctgggcc aggtaggcgg cggtgggaaa gccgggccgc gcctcggcga
     1681 cggaccaggc gccgcccgca agatagtcga ccaggggatt gaccgccgga tcgagggcct
     1741 cgccgcgggc cgccacatag tgcggcaggt cgaaccaggc gctggggctg cgcccctccg
     1801 cggccccgcc ggtcaggaag tgggtcaggg gctcggcccc gatctcggcc acgtcggggt
     1861 tctgttcgac gtaccagcgc ggatcgaaca gcgggtgcgg tgacaggccc tcgcgccagc
     1921 cgatggtcag gtagtgaacc agcggcggga tctcggcggc ctggcgcggc atctggcggc
     1981 ggtaccaggc cgggtcgaac agcggatgcg gcgagagccc gtcgcgccag ccggttcgta
     2041 gatagtgcga ggccgggtcc tcatcgggcg ccagctgcgg cccctgggcg gcgtagtgga
     2101 ggacgtcgaa cgccgggtgc ggattgcgtc cccgcgccgc gccttcccgc acgaaatgtt
     2161 ccagcggcga cacctggctg gcgctgagcg ccgcggcgtt ctgcccgacg taatagtcgg
     2221 cgtgcatcag cggatgcggg ttcttccccg ttgccgcgcc gcgaaccaga taatggacca
     2281 gcggcgcgag gcccgaagcc gcggcctcgg gataggtttc cagataccag gcctgatcga
     2341 acagggtcgc cggcgccgcg gtgggatcgg tccggcggcg gacgtagacg gccatctccg
     2401 tcaggtcgcc gccccgccag acgccggcgt cggcgatcag ccgcgcatgg ccggccagcc
     2461 cagccgccag catcagtcgg tcgaacccgc gctgggcccg gccgcgccgc cggacagggc
     2521 gcggggaact ggtcgccaga tgccgctgca ccgccagccg gcgctccccg gcgagcgcct
     2581 gcgcccgccc cttcagggcc tcgccaagcg ccagggtcag ttccgtacgg gtcagggctt
     2641 cgcgaatctg ggcctcgtgg accaggccat gggccaggcc cagatcggcg cgcaggcccg
     2701 cgaccttctt cgccacggcg gcagcctttc gggcgacctc agtggggcgc gcctcggcag
     2761 gcttcggcga tggggcgacg gtcttggcca tgtggggttg tctcaggcgc gcgctgctgc
     2821 ctgtcaaggc gagcggctag tgtggcgatt tcgaaattca cctgcgcttg cggcaggcgc
     2881 cgagtgaatt tcggaatctc cagccacact agagcccctc gcgctccagc cactggctgt
     2941 agccgccctc gccggccatg aagggatcgg gaaaggccat ctgcagatcg gcgcgctggc
     3001 ggtagagcac ccggtggcgc ttctcgatcg gcgtcccgtc ggtataggcg ccataggccc
     3061 accagcgctc ggggatggcc gcgtccgtgg ccttcgtcac ctggcgcttg taccagctcc
     3121 agacctcgta gaccgggaag ttggtcccgc cgtacttctt ggtcatggcg tcgcccatgg
     3181 gcccgagctt ggtgaagtgc cagaagcgca agggggcgcc gttgacggtg acctggccgt
     3241 ccttctgcac cgccaccgtc cgtgtgctga gattccaact cgcgacattg tagccgggat
     3301 cgcggaccac cttgaccttg tcgaagagcg ccgggacgtg gtcgcaccag cgctggtcga
     3361 cgaagaggcc catgggcatg tcgtcgtagc accagtcgag caggcggtcg ttccaccact
     3421 tcgcgaaccg cgcgccctcg cccgtggtgc ggatcgccac gaagccgagg ttgaagatgc
     3481 cggtgcgcga ggccgaaagg tcgttgtccg cgatcgcctc ggcggtgtcg ttggggtcga
     3541 tgaggtgcgg ggtaagcagg atgtcgtggt cttccagcca ggcttccagg ggcgccaggc
     3601 tggcgaacag cgccgtgtcc ggatcgagat agatcacggc gtcggcgccc ccgatgccgg
     3661 cttggctgca ggcctggtgg atgaaaggcc ccttcaccgc cgtgcagacc tccaccacat
     3721 cgtgcttgaa gagccacgcc tggaagtcag ggatgcccag gtcctcggcc cagacgacac
     3781 ggtcgaaggg ctccttgccg ggatcgaagc ggaagccggc gggcggccgg tcggtgatca
     3841 gggccaccag ctcccactcc ggatgaaagc ggcggagcgt ctggaacagc acccgggcgc
     3901 gattcaggta ggagaaggtg aagctggaat agcacaggac cttcacgccg gaccctccag
     3961 gaggtcgaca gtgagcgcgc tgaacgccag gtcgtagagg gcgggcttgc ggacgctgcg
     4021 ggccagggac gcgacctcgc cggtctcgaa ggcgcgagcg agcgcatctt cgccgtcgag
     4081 caccaggcca tggccgcccg ccgcgacaaa agccgcgacg ttgccgctgt ccggcccggc
     4141 gatgatcgca gcgccggccg ccaccgcctc ataggcgatg aacgagaagg tctcgcggca
     4201 gagcggccag atcagcaccg cgtcggcctg gtgcttctcg atcgcttcct gcatggcgcg
     4261 gggcctgtcg tcggtgacgg tgaccttgtg gaactccagg gccaggccgg gctgggggcg
     4321 gccccccagg tgcaggaagt ggtagcgcgg atcgtcggcg tgcttgaccg ccaggtcgcg
     4381 gaagatctcc cagcccttgt gggccgccgg catgccggca taggcgatgc gcagcggccg
     4441 gtcggcgggc gccttgggcg cggggccgcg ctccaccaga cgcgcatgcg gcaggaccac
     4501 caggccggcg gtgggatagg ccgccgtcgc cttccagagg tccagcgtcg gctgcgaggg
     4561 gctgacgacg gtcagcgaca gccgctcgaa gaggcgctcg tgttcggcca catgccgggc
     4621 gcgccagggg ccgtagacgc agatgccgca ggcctggctc cccggcggcg gggcggagca
     4681 gtcttccacg tcgttccgca gcaggtggaa gccggcgcaa aggctcgcga aatcgtgcag
     4741 ccagaagaat ccggccttca ggcccgcggc ggccgcgatg tcggcggtct cgcccgcggc
     4801 gtggcccaac aggctgtgga tcgcgaagct ccgctggccg gccttgaccg cgcccgccgc
     4861 cttgccaaga acgccggcga tggttcgggg cgcgaaaacc cccaccgcct tgccgttcag
     4921 cagcaccccc aggtgtcccg cctcgccgcg cacgcggacc accggccagg gcttggcggg
     4981 atagaggtgc aggtggtcgc ggccgagttc cgcgatccgc gcgccctcgc gctgcaggca
     5041 aagctgcacg ccgccggtgt tggcggtgta gtcgtcgtgg ctgaaggtga cgtgcaggtc
     5101 gcggagctgg gtcttcgacc cggcgagcgc cttggtcaga gccgcggccg tcccgagctt
     5161 cagcttggcc gaggcccgcg cgacggcggc gatcttggcc tccagcggga ccaaccgctt
     5221 gatgatttcg tagcggaagc cgagttcagc gcgcccggtc cggccctcgg cgcgcccggc
     5281 gctgaggaag tgaacgaagg gattgagctc ggcctcggcg atgtccggat agctctccag
     5341 atagtccttc accgagaacg cagcgttggg gtcgcgcccc tcgcgccagc cgccggagag
     5401 gaagtggtcc agcggatcga cgccgctctt ggcca
//
LOCUS       DATAJL010000801         3535 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97909,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000801 DATAJL010000000
VERSION     DATAJL010000801.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97909"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..737
                     /locus_tag="VHN39_15200"
     CDS             <1..737
                     /locus_tag="VHN39_15200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEX2817739.1"
                     /translation="LILAFGVTLATGHRGQRLASAIGSGIDSRFGLAGFRLRTIEVQG
                     ASTLAAADIVKAAQIYKNQPLLGLNLNELRKRVEAVGWVKEARVVRLLPDTLVVAVVE
                     RRQMAVWQHAGRQAVIDDHGQVIPEADPAHFSTLPLVVGEGGAEHAPEILPVIAQRPR
                     LMGQMDALVRVDDRRWDVRMKDGSLIQLPADGVENALMQLERLDQRSRILELGFDRID
                     LRNPDVVAVRPRQNQPPIVSPTAAGL"
     gene            758..2134
                     /gene="ftsA"
                     /locus_tag="VHN39_15205"
     CDS             758..2134
                     /gene="ftsA"
                     /locus_tag="VHN39_15205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEX2817740.1"
                     /translation="MLKLASRAEAQTESHRAEGRKPEAAKSKDGLKAALVRTPVVAAV
                     DLGASKVACFIMKPDGVRKGDRTLTTAGVGYVQSRGIRGGSIVNLDEASEAIAQAVER
                     AENVAGVNVQSVVVSTAGGQLTSHRVAGRVSIGARPISDNDLVRAISHALAQIKLPGR
                     RAAHILPIAWSVDGQGGVRDPRAMFGRTLGVELLVVSVSEAVFQTLGACVERAHLQFE
                     GVVAAPFVSALAALEEDEMDLGAVCIDMGGGSTSAAVFTAGSLVHVETVPVGGAHVTQ
                     DIARGLSTSIAGAERIKTLHGSAIASANEDREMIEAPPRGDDPGAGPVIAPRSLLKGI
                     IAPRVEETLELLRDRLKTSGAPVEAGAGLVLTGGASQLAGVREVAVRVFDRPVRLGRP
                     RRVPHLADAASGPAFTAAAGILHRAAFGPREAVSAKALASAKLRREPLDPRANPVAKA
                     ASWLRDNL"
     gene            complement(2131..3261)
                     /locus_tag="VHN39_15210"
     CDS             complement(2131..3261)
                     /locus_tag="VHN39_15210"
                     /inference="COORDINATES: protein motif:HMM:NF024803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX2817741.1"
                     /translation="MTTPVRLFSPAETSRRLGVSVRALRLYERRGLVRPQRTEAGWRV
                     YGPAEIARLHQVLALKSLGLSLARIAELTKGRETDLDAVLALQEQVLTTRKADLERAL
                     VALRKARARLAVDQALSLDDLATLSRETTMRNATIDDETWARDFAPVWRRHLTDAGYE
                     KFFRIEPDALAALGMDEAAFHAAWNEVIEETERLCAAGDPRTPEARAAVERWVQLQEV
                     YLKGDPELMMASMLAQYEALSTPNLAEKMNVSRELLTFVNEVVVMQSPADQSPPPSGA
                     GQPADPRTEDVVRKAVASLQAGTPKYERMTPELAAIARPQTWMFQDLIQKLGGLRAVE
                     FVAATDVGDAYRVTFEQAALICTVKLTTESLIESLSWVAAGP"
BASE COUNT          526 a         1251 c         1202 g          556 t
ORIGIN      
        1 tcctcatcct ggcgttcggc gtgacactcg ccaccggcca tcgcggccag cggctggcct
       61 ccgccatcgg gagcggaatc gacagccggt ttggcctggc gggtttccgc ctgcgcacca
      121 tcgaggtgca gggcgcctcg accctggccg ccgccgacat cgtcaaggcc gcccagatct
      181 acaagaacca gcccctgctg ggcctgaacc tcaacgaact cagaaagcgc gtcgaggccg
      241 tcgggtgggt caaggaagcg cgcgtcgttc gcctgctccc cgacaccctg gtggtcgccg
      301 tggtcgagcg ccgccagatg gccgtctggc agcacgctgg gcggcaggcg gtcatcgacg
      361 accatggcca ggtgatcccc gaggccgacc cggcgcattt ctcgaccctg ccgctggtgg
      421 tgggcgaggg cggcgccgaa cacgcgccgg agatcctgcc ggtgatcgcg caacggcccc
      481 ggctgatggg ccagatggac gccctggtcc gcgtcgacga ccgccgctgg gacgtgcgca
      541 tgaaggacgg ctcgctgatc cagctgccgg ccgacggcgt cgagaacgcg ctcatgcagc
      601 tcgaacgtct cgaccagcgc tcgcgcatcc tcgaactcgg cttcgaccgc atcgacctca
      661 gaaatcccga cgtggtcgcc gtgcgtcccc gccagaacca acccccaatc gtttcgccga
      721 ccgcggcggg cctctgatgc agatggaaga ccagtagatg ttgaagttgg cgagccgcgc
      781 tgaggcgcag acggaaagcc atcgggcgga aggccgcaag cccgaggccg cgaagtccaa
      841 ggacgggctg aaagccgccc tggtgcgcac gcccgtcgtg gccgccgtcg atctcggcgc
      901 ctcgaaagtc gcctgcttca tcatgaagcc cgatggggtg cgcaagggcg accgcacgct
      961 caccaccgcc ggcgtcggct atgtccagtc gcgcggcatc cgcggcggct ccatcgtcaa
     1021 cctcgacgag gcgtccgaag ccatcgccca ggcggtcgag cgggccgaga acgtggccgg
     1081 cgtcaacgtc cagtccgtcg tcgtctcgac ggccggcggc cagctcactt ctcaccgcgt
     1141 ggccggccgg gtctccatcg gcgcccgacc catttccgac aacgacctgg tgcgcgcgat
     1201 cagccatgcg ctggcccaga tcaagctgcc gggccggcgg gccgcccaca tcctgccgat
     1261 cgcctggtcg gtggacgggc agggcggggt gcgcgatccg cgcgcgatgt tcggccgcac
     1321 gctgggcgtc gagctgctgg tcgtctcggt ttccgaggcc gtttttcaga ccctgggcgc
     1381 ctgcgtcgag cgcgcgcacc tgcagtttga aggggtggtt gcggcgccct tcgtctccgc
     1441 gctcgccgcg ctggaggaag acgagatgga tctgggcgcc gtctgcatcg acatgggtgg
     1501 cggctcgacc tcggcggcgg tgttcactgc aggctccctg gttcacgtgg agaccgttcc
     1561 ggtcggcggg gcgcacgtga cccaagacat cgcccgcggg ctttccacct ccatcgccgg
     1621 cgccgagcgg atcaagaccc tgcacggctc ggccatcgcc tcggccaacg aggaccgcga
     1681 gatgatcgag gcgccgccac ggggcgacga ccccggcgcg ggtccggtga tagcgccccg
     1741 gtccctgctc aagggcatca tcgcgccgcg cgtcgaggaa accctcgaac tgctccgcga
     1801 ccggctgaag acttccggcg ctccggtcga ggccggcgcg ggcctggtgc tgaccggcgg
     1861 cgcgagccag ctcgctggtg tgcgcgaagt ggcggtgcgg gtgttcgacc gtccggtgcg
     1921 cctgggccgt ccacgccgcg tgccgcacct ggccgacgcc gcctcaggcc ccgccttcac
     1981 cgccgccgcc ggcatcctgc accgcgccgc cttcggaccc cgcgaggcgg tcagcgccaa
     2041 ggcgctcgcc tcggccaagc tgcgacgcga gccgctggat ccgcgggcga acccggtggc
     2101 gaaggccgcg tcctggctga gggacaacct ctagggaccc gcagccaccc aactcaggct
     2161 ttcgatcagg ctctcggtcg tcagcttcac cgtgcagatc agcgcggcct gttcgaaggt
     2221 gacccgatag gcgtcgccga catcggtcgc cgccacgaac tcaacggccc gtaagccgcc
     2281 cagcttctgg atcagatcct ggaacatcca cgtctgcggt cgcgcgatag cggccagctc
     2341 gggcgtcatc cgttcgtact tcggcgtccc cgcctgaagg cttgccacag ctttgcgcac
     2401 aacgtcctca gtccttgggt cggccggttg gcccgctccg gagggcggcg gcgactggtc
     2461 cgccgggctc tgcatgacca cgacctcgtt tacgaaggtg agcagctcgc ggctgacatt
     2521 catcttctcg gccaggttcg gcgtggacag tgcctcatac tgggcgagca tcgaggccat
     2581 catcagttct gggtcgccct tcaggtaaac ctcctgaagc tgcacccagc gctcgacagc
     2641 cgcccgcgcc tccggcgttc gcggatcgcc agcggcgcac agccgctcgg tttcctcgat
     2701 cacctcattc caggccgcgt ggaacgccgc ctcgtccatg ccgagcgcgg cgagggcgtc
     2761 cggttcgatc cggaagaact tctcataacc ggcgtcggtg aggtggcggc gccagacggg
     2821 ggcgaagtca cgcgcccagg tttcgtcgtc gatcgttgcg tttcgcatgg tggtctctct
     2881 ggacagtgtt gctaggtcgt ccagggagag cgcttgatcg acggcgagcc gggcgcgggc
     2941 cttgcgcagg gcgacgagag cccgttcgag gtcggccttg cgagtcgtga gcacctgttc
     3001 ctgcagcgcc aggacggcgt cgaggtcggt ttcgcggccc ttggtcagtt cggcgatgcg
     3061 tgccagcgac aagcctagag acttgagcgc cagaacctga tgcagccgtg cgatttccgc
     3121 cggcccgtaa acccgccagc ccgcctcggt gcgctgcggt cggaccaggc cgcgccgctc
     3181 gtaaagccga agcgcccgca cgctcacgcc gaggcggcgg gaggtctcgg cgggactgaa
     3241 gaggcggacc ggtgtcgtca catgcgtctc cgttggacgc tggcccttat ggggccggac
     3301 cctggttccg gctcaagcgg aaagtttccg gaggtcccgc cgccggcggc gactgttccg
     3361 acgctgcgta aacctcttac cgtcgatgag agcgccgcgg cgagatggcg ccgcaacgcg
     3421 aggcttcatc atgtcgggcg cctacgaaca catcctctgt tcggtcgagg acgggatcat
     3481 gcagatcacg ctgaatcggc ccgaaatgct caacgcctac accgccacca tgggc
//
LOCUS       DATAJL010000802         2218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_97960,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000802 DATAJL010000000
VERSION     DATAJL010000802.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2218
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_97960"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..716
                     /locus_tag="VHN39_15215"
     CDS             <1..716
                     /locus_tag="VHN39_15215"
                     /inference="COORDINATES: protein motif:HMM:NF013775.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEX2817742.1"
                     /translation="PVSLAEYPAAGHGLIVELAQAVRLLHETPPFPPRGDYLDGVGDL
                     IDQFRSLDILEPAATDELFELWETLRAGYRTRPSDLVSSHNDLNPGNIVYDGTRLWIV
                     DWDAAFLADRYVDLATLANWLGRDAAGEAALLATYFGRASDPEERARFDLMRLVNHLF
                     TGVIFLNVAMGERPGARLADRTLAGPSLADIHVGLRTGAFAMMEWENRVTYGKARMAF
                     ALEGLRAPAFGAALAELAA"
     gene            783..2111
                     /locus_tag="VHN39_15220"
     CDS             783..2111
                     /locus_tag="VHN39_15220"
                     /EC_number="3.4.13.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070573 - metallodipeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEX2817743.1"
                     /translation="MRGYQVLGLAAGLILVSAPAAPAQPTDAQLQARVAAVLARTPLI
                     DGHNDFPWEVRERFASKVDAFDMRSDLTRLPRAKDAPADQTLLMTDIPRLRAGHVGGQ
                     FWSVWIPTTMTGPLAVETTVQQIDIVKGLAARYPADLAMAYTADDIVRAHKAGKVASL
                     IGVEGGHQIDDSLAVLRQYYVLGARYMTLSHASNNHFADSATDNPAHNGLTPFGKAVV
                     TEMNRLGMLVDLSHVSAETMRQALAATQAPVIFSHSGARALSDHPRNVPDDVLVLVAR
                     NRGVVMANFATGYVNEARAKWNADRAAELARYNSPPYAGLYIGQPERAKAALAEWDRA
                     HPRPVTTLSMVADHIEHIRKVAGVDSVGLGSDFDGIPDAPVGLEDVSRYPALLGELAR
                     RGWSDEDLGKLAGGNLLRALRDAEAVAARLQATTAPNYATLADLDGPPKP"
BASE COUNT          352 a          796 c          741 g          329 t
ORIGIN      
        1 cgccggtctc gctggccgaa tatccggccg ctgggcacgg cctgatcgtc gagctcgctc
       61 aggctgtgcg gctattgcac gaaaccccac cctttccgcc cagaggcgac tacctcgacg
      121 gcgtggggga tctgatcgat cagttccggt cgctcgacat cctggagccc gcggccaccg
      181 acgagctgtt cgagctctgg gaaaccttgc gcgccggcta ccgcacgcgg ccgagcgacc
      241 tggtctccag ccacaacgac ctcaatcccg gcaacatcgt ctacgacgga acgcgcctgt
      301 ggattgtgga ctgggacgcg gccttcctgg ccgaccgcta cgtggatctt gcgacactcg
      361 ccaactggct cggccgcgat gcggcgggcg aggcggcgct gctcgccacc tacttcggcc
      421 gcgcgtcgga ccccgaggaa cgcgctcggt tcgacctgat gcggctggtg aaccacctct
      481 tcaccggcgt gatcttcctc aatgtggcga tgggcgaacg gcccggcgcg cgcctcgcgg
      541 accgcaccct ggccggcccc agcctggcgg acatccatgt ggggctgcgc accggggcgt
      601 tcgcgatgat ggaatgggag aaccgcgtga cctacggcaa ggcgcgcatg gccttcgccc
      661 tggagggcct tcgagcgcct gcctttggcg cagcgctggc tgagctggct gcctagtgtc
      721 ccggcgcgat tgacgaaggc tccggcgcgc gcattgtccg tccacggcgg gggagatgcg
      781 acatgcgcgg atatcaggtg cttgggctgg cggcgggcct gatcctggtc tcggcgccgg
      841 cggcgccggc gcagcccacc gacgcccagc ttcaggcccg tgtcgccgcg gtcctggcca
      901 ggacgccgct gatcgacggc cacaacgact ttccctggga agtccgcgag cggttcgcca
      961 gcaaagtcga cgccttcgat atgcgcagcg acctgaccag gctcccccgc gccaaggacg
     1021 cgccggccga ccagacgctc ctgatgaccg acatcccacg cctgcgcgcc ggccatgtgg
     1081 gcggccagtt ctggtcggtg tggatcccga cgaccatgac ggggccgctc gcggtcgaga
     1141 caacggtcca gcagatcgac atcgtgaagg gcctggccgc acgctacccc gccgacctcg
     1201 ccatggccta caccgccgac gacatcgtcc gcgcccacaa ggccggcaag gtcgcctcgc
     1261 tgatcggggt ggagggcggc caccagatcg acgattccct ggcggtgctg cgccagtact
     1321 atgtgctggg cgcgcgctac atgacgctga gccacgcctc caacaatcac ttcgccgact
     1381 cggccaccga caatccggcg cacaacggcc tgaccccctt cggcaaggcg gtggtgaccg
     1441 agatgaaccg gttgggcatg ctggtcgacc tcagtcatgt ctcggccgag accatgcgcc
     1501 aggccttggc ggcgacccag gcgccggtga tcttctccca ctccggcgca cgcgccctca
     1561 gcgaccatcc gcgcaatgtg ccggacgatg tcctcgtgct ggtcgccagg aaccgcgggg
     1621 tggtgatggc caatttcgcc accggttatg tcaacgaagc ccgcgcgaag tggaacgccg
     1681 accgggccgc ggagctggcg cgctacaact ctccgcccta cgccggcctc tatatcggcc
     1741 agccggagcg ggccaaggcg gcgctcgcag aatgggacag ggcccatccc cgaccggtca
     1801 cgacgctctc catggtcgcc gaccacatcg agcacatccg caaggtggcc ggagtcgaca
     1861 gcgtcggcct gggctccgac ttcgacggca tccccgacgc gccggtgggc ctggaagacg
     1921 tcagccgata ccccgccctg cttggcgagc tggcgcgccg gggctggagc gacgaggacc
     1981 tgggcaagct cgccggcggc aacctcctgc gggcgctgcg cgatgccgag gccgtggccg
     2041 cccgcttgca ggcgacgacg gcgcccaact acgcgacact ggccgacctg gacggtccgc
     2101 cgaaacctta gtcgctcagc gaccggtcct tggtttccgg caccaggaag aggcaggtca
     2161 cacaggcgat cgcggtgaac gcgaaggggt accagagccc ggaatagatg ttgcccac
//
LOCUS       DATAJL010000803         4257 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85193,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000803 DATAJL010000000
VERSION     DATAJL010000803.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4257
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85193"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..632
                     /locus_tag="VHN39_15225"
     CDS             <1..632
                     /locus_tag="VHN39_15225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013480822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX2817744.1"
                     /translation="TMASAHMVLALTVGILAGTWLAEYGGRSAYGGVIRFLNDVLLSA
                     PSILVGLFVYEILVAPFHTFSGLAGAVALAMLAVPLIVRTTEDVLLLQAATLREAGVA
                     LGAPLSFVIRTILWRSARSGLLTGALLAFARISGETAPLLFTALNNQFFSLDLRHPTA
                     NLPVVIFNFALSAYDDWRRLAWAGALLIAGTVLAVTVVARIVAQEQKRS"
     gene            629..1444
                     /gene="pstB"
                     /locus_tag="VHN39_15230"
     CDS             629..1444
                     /gene="pstB"
                     /locus_tag="VHN39_15230"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HEX2817745.1"
                     /translation="MNTLNSTVEEFETSIADVDRASVKVDVRNLDFFYGKTRSLKAVS
                     IPFARNKATALIGPSGCGKSTLLRTLNRMYALYPGQRAEGEIMLDGENILGSGVDLAR
                     LRARVGMVFQKPTPFPMSVYDNVAYGVRLYENLSKPDMDARIEEALTRAALWNEVKDN
                     LKGSGLGLSGGQQQRLCVARGIAVRPEVLLLDEPTSALDPISSAKLEETVTQLKADHT
                     IVIVTHNLGQAARVSDYTGFMYLGELIEFGPTDELFTRPATRKTSDYITGRFG"
     gene            complement(1505..3934)
                     /locus_tag="VHN39_15235"
     CDS             complement(1505..3934)
                     /locus_tag="VHN39_15235"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817746.1"
                     /translation="MSARAFASVSVAAILASIPLAAAAADDAPTTISPIVVIAPTPLA
                     GPGVEADKLPASTETIDAGELRRRGSLSVTDALEQRTPGLSLSDTQGNGFTKDLNYRG
                     FSASPLQGTPQGLAVYMGGVRLNEAFGDTVNWDLIPEVAVRRIDLVTGDPAFGLNALG
                     GALSLSMKTGQTAPGGMASVESGSFGRTFGSLEYGASQGPWSAYVAADGGRERGWRDH
                     SPSSLDRGYADFGWSEGRSELHLVAAGGQTSLGVVGPTPVDMLAADRRSTFTFPQTTH
                     DRNGLIALNGSFKASDDWSLQGALYGRAFRQTHVDGNDGDFAGCSGAATNPLFGTLCV
                     QDDAFPAAVRPPAAAFQVLGADGAPVGCPPLAAGQTTLCNGIPYGTVDRTNIRTTTGG
                     ASMQAVRTARLFERPNLFSAGLSYDESHVRFDSSSTLGLILPDLSVQTTPGVVTGAGQ
                     VIHTAGAIAYSPVVIHATNRAWGVYATDTLDLTDRLFLTLSGRFNGIAVSIADQTGGS
                     PDLNGSHRYDRFNPAAGLAWKVTGRLTAYDGYAENNRAPTPLELSCSNPLKPCLLENA
                     LVSDPPLNQVVSRTWQAGVRGTAALGDGHLDWRLGAYRSDNDDDIVGLASAIQGRGSY
                     ANVPRTRREGLEAEINVRSDRWMAYASASQVEATYRFSGFLPSPNSPFADANGNVAVT
                     PGDRIGGIPPGRYKAGADYNLTPTLTVGADVLGVSAQRRGGDESNQDALLPSYWTVDA
                     HAAWDLGHGVQFFGRVDNLFDRKYATFGTYFGADGLADVHPSPLPADPSPDSDTPAAP
                     RSFLVGLRVRW"
     gene            complement(3934..>4257)
                     /locus_tag="VHN39_15240"
     CDS             complement(3934..>4257)
                     /locus_tag="VHN39_15240"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2817747.1"
                     /translation="TFGLVILEAMASGTPVAAYPAPGPIDIIPNSGAGKLATSATEGL
                     REACLEALTCDRKQVRAFAEKFSWRACAEDFVRNLQPYPEPEKTRFWRRLRRLARVRR
                     RPAVA"
BASE COUNT          638 a         1474 c         1481 g          664 t
ORIGIN      
        1 ggaccatggc gagcgcgcac atggtcctgg cgctcacggt gggcatcttg gccggcacct
       61 ggctggcgga atatggcgga cgctcggcct atggcggggt gatccggttc ctcaacgacg
      121 tgctcttgtc cgcgccctcg atcctggtgg gcctgttcgt ctatgagatc ctggtcgcgc
      181 cgttccacac cttctccggc ctggccggcg ccgtggccct ggccatgctc gcggtgccgc
      241 tgatcgtcag gaccaccgag gatgtgctgc tgctgcaggc cgccaccctt cgcgaggccg
      301 gcgtcgccct gggcgcgccg ttgtccttcg tgatccgcac gatcctctgg cggtccgccc
      361 ggagcggcct tttgaccggc gccctgctgg ccttcgcgcg gatcagcggc gaaaccgcgc
      421 cgctcttgtt cacggcgctc aacaaccagt tcttctcgct cgaccttcgg catcccaccg
      481 ccaacctgcc ggtggtcatc ttcaacttcg ctctgagcgc ctacgacgac tggcgccggc
      541 tcgcctgggc cggcgccctg ctgatcgccg gcaccgtgct tgccgtcacc gtcgtcgcgc
      601 gtatcgtggc ccaggagcaa aaacgctcat gaacaccctc aattcgaccg tggaagaatt
      661 cgagaccagc atcgccgacg tggaccgcgc gagcgtgaag gtcgacgtca ggaacctcga
      721 cttcttctat ggcaagactc gttcgctgaa ggcggtctcc atccccttcg cccgcaacaa
      781 ggcgaccgcg ctgatcggcc cgtccggctg cggcaagtcc accctgctgc gcacgctcaa
      841 ccgcatgtac gcgctctatc caggccagcg cgccgagggc gagatcatgc tcgacggcga
      901 gaatatcctg ggctccgggg tcgacctggc gcggctgcgc gcccgggtcg gcatggtgtt
      961 ccagaagccg acgccctttc cgatgagcgt ctacgacaac gtggcctacg gcgtgcggct
     1021 ctacgagaac ctctccaagc ccgacatgga cgcccgcatc gaggaagccc tgacccgtgc
     1081 cgcgctctgg aacgaggtga aggacaatct gaaaggatcc ggcctcggcc tctccggcgg
     1141 ccagcagcag cggctgtgcg tcgcccgcgg catcgcggtg aggcccgagg tgctgctgct
     1201 cgacgagccc acctcggcgc tcgacccgat ctcgtcggcc aagctcgagg agaccgtgac
     1261 ccagctcaag gccgaccaca ccatcgtcat cgtcacccac aacctgggcc aggcggcgcg
     1321 cgtcagcgac tacacgggct tcatgtacct gggcgagctc atcgaattcg gcccgacgga
     1381 cgagctcttc acccgcccgg ccacccgcaa gacctccgac tacatcaccg gccggttcgg
     1441 ctaggtgcgt ttcccggctg accgttttca ggtcagccgg tcaggaagag cgaccaagca
     1501 aaagtcacca gcggacgcgc aaccccacca ggaacgaccg tggcgccgcc ggcgtgtcgc
     1561 tgtcgggact gggatcggcc ggcagaggcg aaggatgcac gtcggccagg ccatctgccc
     1621 cgaaataggt cccgaaggtc gcgtatttcc ggtcgaaaag gttgtcgacc cgcccgaaaa
     1681 actgaacccc gtgacccagg tcccaggcgg cgtgggcgtc gacggtccag tagctgggaa
     1741 gcagcgcatc ctggttcgat tcatcgccgc cgcgccgttg ggcgctgacc cccaggacat
     1801 cggcccccac ggtcagggtc ggcgtgagat tgtagtccgc gccggccttg tagcggcccg
     1861 gcgggatgcc gccgatccgg tcgccgggcg tgacagccac attgccgttg gcgtcggcga
     1921 agggactgtt gggcgacggc aggaaccctg agaagcggta ggtcgcctct acctggctcg
     1981 cggacgcata ggccatccag cggtcggacc tgacgttgat ctccgcctcc aggccctcac
     2041 ggcgggtgcg cggcacattg gcgtaagagc cgcggccctg gatggcgctg gccaggccca
     2101 cgatgtcgtc gtcgttgtcg ctgcggtagg cgccgagccg ccagtccaga tggccgtcgc
     2161 ccagcgccgc cgtcccgcgc acgccggcct gccaggtgcg cgagaccacc tggttcagcg
     2221 gcgggtcgga gaccagggcg ttttccagca gacaaggctt caaggggttg gagcaggaga
     2281 gctccagcgg cgtcggcgcc cggttgttct cggcgtagcc gtcatacgcg gtgagcctgc
     2341 ctgtgacctt ccaggccagc cccgcggccg ggttgaaccg gtcgtagcgg tggctgccgt
     2401 tgaggtccgg gctgcccccg gtctgatcgg cgatcgagac cgcgatgccg ttgaaccgcc
     2461 cgctcagcgt caggaacagc cggtcggtga gatcgagcgt gtcggtggcg tagacgcccc
     2521 aggcgcggtt cgtggcgtgg atgaccaccg ggctgtaggc gatggcgccg gcggtgtgga
     2581 tgacctggcc cgcgccggtg accacgcccg gcgtggtctg gacgctgagg tcgggaagga
     2641 tcaggcccag agtcgagctg gaatcgaagc gcacgtggct ctcgtcgtaa ctgagccccg
     2701 cgctgaacag gttgggccgc tcgaacagcc gcgccgtgcg cacggcctgc atggaggcgc
     2761 cgccggtcgt ggtccgaatg ttggtgcggt cgacggtgcc ataggggatg ccgttgcaga
     2821 gtgtcgtctg gccggctgcg agcggcgggc agcctacggg tgcgccgtcc gcgcccagca
     2881 cctggaaagc cgcagccggc ggccggaccg cggccggaaa ggcgtcgtcc tgaacgcaaa
     2941 gcgtgccgaa caggggattg gtcgccgcgc cgctgcagcc tgcgaaatcg ccgtcgttgc
     3001 cgtccacatg ggtctggcgg aacgcgcggc catagagggc gccctgcaac gaccagtcgt
     3061 ccgaggcctt gaacgacccg ttgagcgcga tgaggccgtt ccggtcatga gtggtctggg
     3121 ggaaggtgaa ggtcgatcgc cggtcggccg ccagcatgtc caccggcgtc gggcccacga
     3181 cgcccaggct ggtctggccg ccggccgcca ccaggtgcag ctcggatcgt ccctcgctcc
     3241 agccgaagtc ggcgtagccg cggtcgaggc tcgagggcga gtggtcccgc cagccgcgct
     3301 cgcgcccgcc gtcagcggcg acgtaggctg accaggggcc ctgggacgcg ccatattcca
     3361 ggctgccaaa ggtccgcccg aaagagccgc tctcgacgct ggccatgccg cccggagcgg
     3421 tctggccggt cttcatgctc aggctgagcg cgccccccag ggcgttcagg ccaaaggccg
     3481 ggtcgccagt gaccaggtcg atgcggcgga ccgcgacctc ggggatcagg tcccagttga
     3541 ccgtgtcgcc gaacgcctcg ttgagccgca ccccgcccat gtagactgcc agcccctgcg
     3601 gcgtgccctg caggggcgag gccgaaaagc cgcggtaatt gaggtccttg gtgaagccgt
     3661 tgccctgggt gtcggagagg ctgagccccg gcgtccgctg ctccagcgcg tcggtgacgg
     3721 agagtgaccc gcgccgccgc agctcgccgg cgtcgatggt ctcggtggag gccggcagtt
     3781 tgtcggcctc gacgccgggt cccgccagcg gcgtcggcgc gatcaccacg atcgggctga
     3841 tggtggtcgg agcgtcgtcg gccgccgccg ccgcgagcgg aattgaagcc agaatcgccg
     3901 ccacactgac ggacgcgaac gccctggccg acatcaggcg accgcgggcc gccggcgcac
     3961 gcgcgcgagc cgccttagcc ttcgccagaa gcgggtcttc tccggctccg gatagggctg
     4021 caggttgcgc acgaagtcct cggcgcaggc ccgccagctg aacttctcgg cgaaggcgcg
     4081 cacctgtttg cggtcgcagg tcagcgcctc cagacaggcc tcgcgcaggc cctcggtggc
     4141 gctggtggcg agcttgccgg ctcccgaatt ggggatgatg tcgatgggcc cgggcgccgg
     4201 ataggccgcc accggggtgc cggacgccat ggcctccagg atcaccaggc cgaaggt
//
LOCUS       DATAJL010000804         2702 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98037,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000804 DATAJL010000000
VERSION     DATAJL010000804.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2702
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98037"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..404
                     /locus_tag="VHN39_15245"
     CDS             <1..404
                     /locus_tag="VHN39_15245"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008745 - N-acetylmuramoyl-L-alanine
                     amidase activity [Evidence IEA];
                     GO_process: GO:0009253 - peptidoglycan catabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEX2817748.1"
                     /translation="VYTLSDKASNRSARFVRRDDWFMKASLTGDRGVSDILLDLTQRA
                     TKNRSAAFAQTLVTRIEGKAPLLRRSQRDAGFMVLLAPDVPAVLLEMGFLTNTEDEQF
                     LRDPAQRGRLMTAVGDSIDDYFAQATRLASR"
     gene            498..>2702
                     /locus_tag="VHN39_15250"
     CDS             498..>2702
                     /locus_tag="VHN39_15250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEX2817749.1"
                     /translation="MNPPREKWVAIAGVTVLSLVALAGFAVAIWAAWLFHDMPDAGDL
                     ADYHPPTATRAYAWDGTLIGEFSRERRIFVPYDNIPPQLAQAFLAAEDRNFFKHSGLD
                     YTGIVRASLKDVINLAQGRRLESGSTITQQVAKNILLTNDATVGRKLKEAMIAQQLEG
                     TLSKERILELYMNEIWLGYRSYGVGAAAYNYFGKSITDLDLAESAYLATLPKGPDNYH
                     PIRHKAAAIGRRNWVLDQMADSGWVTRAQADAAKQEDLKVQPEPSRAKYRDADYFVEE
                     VRRRGLATLGPRLTEGGYYMRTTLDPRLQSAARTALMDGLERYDRRHGWRGAWGHVAT
                     LTGWEAVAKTTVKPAERRTWLAAVVTDVKGGVRIRTVDGLTGALAAEDVAWARAGRGI
                     GAGDLIFVAPDDKGGPDFRLKQVPAVNGALVAMDPDSGRVLAMVGGYSFSLSSFNRAT
                     QALRQPGSAFKPIVYATALENGYTPASVVMDAPITLPGGNGKAWTPENYEHEYLGPLQ
                     LRKGLELSLNTMTVRLAQGVGMPKISASAIRLGVVTKMENVLAMALGAGETTVFRLTA
                     AYSAFVNGGRKIEPHLIELVQDREGKTIFKADARECDRCTMGFNGDESPRIPASGAQV
                     WDPITAYQITSMLQGVVQRGTGAAASVLGRPTGGKTGTTSEFRSAWFVGFTPHIVVGT
                     YIGFDDNRTLGEGEQGARAALPIFIDFMKEANKYYPPDDFKAPPNAKFAMIRG"
BASE COUNT          454 a          981 c          876 g          391 t
ORIGIN      
        1 gcgtctacac cctctccgac aaggcctcga accgctccgc gcgcttcgtg cgccgcgacg
       61 actggttcat gaaggcgagc ctcaccggcg accgcggcgt ctcggatatc ctgctcgacc
      121 tgacccaaag ggcaaccaag aaccgctcgg ccgccttcgc ccagaccctc gtcacccgca
      181 tcgagggcaa ggcgccgctg ctgcgccgca gccagcgtga cgccggcttc atggtgctgc
      241 tggcccccga cgttcccgcc gttctgctgg agatgggttt cctcaccaac accgaggacg
      301 agcagttcct gcgcgacccc gcccagcgcg gacgcctgat gaccgccgtc ggcgattcca
      361 tcgacgacta cttcgcccag gccacgaggc tggcctcgcg ctgaccccgg cgaccgcgcc
      421 agccgttggc gccgcatccg aagcccgcta gaccgaaggc cagatggggc ggggcgcctc
      481 tggaggccgt tagtccgttg aatcctcccc gcgagaaatg ggtcgcgatc gccggcgtca
      541 cggtgctgag cctcgtcgcc ctggccgggt tcgcggtggc gatctgggcg gcctggctgt
      601 tccacgacat gcccgacgcc ggcgacttgg ccgactacca cccgccgacc gccacgcgcg
      661 cctatgcctg ggacggcacc ctgatcggcg agttctcccg cgagcggcgc atcttcgtgc
      721 cctacgacaa catcccgccg cagctcgccc aggccttcct ggccgccgag gaccgcaact
      781 tcttcaagca ctccggcctc gactacaccg gcatcgtccg cgccagcctg aaggatgtta
      841 tcaatctcgc ccagggccgg cggctcgaga gcggctcgac catcacccag caggtcgcca
      901 agaacatcct gctcaccaac gacgccacgg tcgggcgcaa gctgaaagag gcgatgatcg
      961 cccagcagct ggagggcacg ctctccaagg agcggatcct cgagctctac atgaacgaga
     1021 tctggctggg gtaccgctcc tatggggtgg gcgcggcggc ctacaactat ttcggcaagt
     1081 cgatcaccga ccttgatctg gcggaaagcg cctatctcgc gaccctgccc aaggggcccg
     1141 acaactatca tccgatccgc cacaaggccg ccgccatcgg ccgccgcaac tgggtgctcg
     1201 accagatggc cgacagtggc tgggtcaccc gcgcccaggc cgacgccgcc aagcaggagg
     1261 atctgaaggt tcagccggaa cccagccgcg caaagtaccg cgacgccgac tatttcgtcg
     1321 aagaggtccg gcgccggggc ctggcgacgc tcgggccgcg cctgaccgag ggcggctatt
     1381 acatgcgcac gacgctcgat ccgcgcctgc agagcgcggc gcgcacggcg ttgatggacg
     1441 ggctggagcg ctacgaccgc cggcacggct ggcgcggcgc ctggggccat gtggcgacgc
     1501 tgaccggctg ggaagccgtg gccaagacaa cggtcaaacc ggctgagcgg cgcacctggc
     1561 ttgccgccgt ggtcaccgac gtgaagggcg gcgtccgcat ccggaccgta gatgggctga
     1621 ccggggcgct cgccgcggag gacgtcgcct gggcccgcgc cggccgtggg atcggcgccg
     1681 gcgacctgat cttcgtggcc cccgacgaca agggcggtcc tgacttccgg ctgaaacagg
     1741 tgccggcggt gaacggcgcc ctggtggcca tggatcccga ctccggccgg gtgctggcca
     1801 tggtgggcgg ctattccttc tcgctctcca gcttcaaccg cgccacccag gcgcttcgcc
     1861 agccggggtc ggcgttcaag ccgatcgtct acgccacggc cctggagaac ggctacacgc
     1921 cggccagcgt ggtgatggac gccccgatca ccctgccggg cggcaacggc aaagcctgga
     1981 cgccggaaaa ctacgagcac gaatacctag gccccctgca gcttcgcaaa ggcctggagc
     2041 tgtcgctcaa caccatgacc gtgcgtctgg ctcagggcgt cggcatgccc aagatcagcg
     2101 cctccgccat ccgcctgggc gtcgtcacca agatggagaa tgtgctcgcc atggccctgg
     2161 gcgccggcga gaccacggtc ttccgcctga cagccgccta ttccgccttc gtcaacggcg
     2221 gccgcaagat cgagccccac ctgatcgagc tggtgcagga ccgtgagggc aagaccatct
     2281 tcaaggccga cgcccgcgag tgcgaccgct gcaccatggg cttcaacggc gacgagagcc
     2341 cgcggatccc ggcgtccgga gcccaggtct gggatccgat caccgcctac cagatcacct
     2401 cgatgctgca gggcgtcgtg cagcgcggaa ccggcgcggc cgcctcggtg ctggggcgtc
     2461 ccaccggcgg gaagaccggc acaacgagcg agttccggtc cgcctggttc gtgggcttca
     2521 cgccgcacat cgtggtgggc acctacatcg gcttcgatga caaccgcacc ctgggcgagg
     2581 gcgagcaagg cgcccgagcg gcgctgccga tcttcatcga tttcatgaaa gaggcgaaca
     2641 agtactaccc gcctgacgac ttcaaggcgc cgcccaacgc caagttcgcg atgatccgtg
     2701 gc
//
LOCUS       DATAJL010000805         2398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85247,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000805 DATAJL010000000
VERSION     DATAJL010000805.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85247"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..1997
                     /locus_tag="VHN39_15255"
     CDS             201..1997
                     /locus_tag="VHN39_15255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817750.1"
                     /translation="MAELYPTDELKFPLRKNVVLQYRAGETGERELQLFCGPHVICFD
                     EPETFAFGEALAGKARFLAGDALAWQPELDWRRVVELLGGLLEKGVLVRASDEAAAVS
                     PSLTPGLRPSARTWADCRNIMAELAGRPLELGHLELVVPIFRVAHIAMDAEGRQVGEA
                     NVFPKALRVEVETRWQTCLFEGSRRQSGLPMNVTALMAMRSYWPQMMVVLGHMRSAYL
                     MRFPEARAGWTVGHVERLATAVLALPTWLLMRGERPVENGRLHPALSCLFRVADGLRM
                     TAHQMLFVPFGEPMRAPDSPVTAAEIFDYAERNHAFLSEHGVCAGPRAMVEEFLSVIL
                     DGKPPADGLPFELDVEVVAALCEIQPALDYGLLGLKAYAAVFSLWPAMARAYEAVAAA
                     VAYCARDGTPAAIELDERFRGNIQNVRLATDIGDEEWRVSRETVYADMYAQCFRGLSG
                     APPTRPLPARLAPQRSATAAAASIQLRAALLSRLGATTPTVALDVLAETILDFLLREQ
                     AVLRLGSEIQREINVHLGRPQPGRAFSGRDVDVHNILQGAEQRSLPYLLDELEAAFGL
                     IIEVDGGSLIVEQRRRLDGTHQQDSNDVGPTV"
     gene            2247..>2398
                     /locus_tag="VHN39_15260"
     CDS             2247..>2398
                     /locus_tag="VHN39_15260"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673067.1"
                     /note="catalyzes the formation of L-histidinol phosphate
                     from imidazole-acetol phosphate and glutamate in histidine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX2817751.1"
                     /translation="MSEEAPPLDRAKAAKPLPKPGITDIHAYVPGKATAKGIADPVKM
                     SANENPL"
BASE COUNT          367 a          818 c          805 g          408 t
ORIGIN      
        1 acccaccgtg gcgtccgttc tccatggtga aggttcgcga tttgaagagc cgccagtggc
       61 ccatcgcaac cttccagggg gctgcgatga acaagcgaga gcgggacttg cgtgcgccgt
      121 cagcgccgat tccaggcgtc attgcgcgag cgtccgcttg gaccgacgcg gcccgccccc
      181 ggtcgcatgg cgcctcgacg gtggcggagc tctatccgac cgacgaactg aagtttccgc
      241 tgcgcaagaa cgtggtgctt caataccgcg ccggtgaaac gggcgagcgg gaactgcagc
      301 tgttttgcgg cccgcatgtg atctgcttcg atgagccgga gaccttcgcc tttggcgagg
      361 ccctggccgg caaggcccgc ttcctcgccg gcgacgcgct ggcctggcag ccggaactgg
      421 actggcggcg ggttgtcgaa ctgctaggcg ggctgcttga gaagggtgtc ttggtgcggg
      481 catcggacga ggcggcggcg gtctcgccgt cgctgacgcc ggggttgcgt ccttccgcgc
      541 gcacctgggc tgattgccgc aacatcatgg ccgagctggc cggccggccg ctggagctcg
      601 ggcacctcga gttggtcgtg ccgatcttcc gcgtggccca cattgcgatg gacgccgagg
      661 gccgccaggt cggcgaggcg aacgtcttcc ccaaagccct gcgggtggaa gtcgagaccc
      721 gttggcagac ctgtcttttc gagggcagcc ggcgccagtc cggtctgccg atgaacgtca
      781 ctgccctgat ggcgatgcgg tcctactggc cccagatgat ggtcgtgctc ggccacatgc
      841 gttctgccta cctgatgcgc ttccccgagg cgcgcgcagg ctggacagtc ggccatgtgg
      901 agcggctggc gacggcggtg ttggcgttgc cgacgtggct gctgatgcgt ggcgaacgcc
      961 ccgtggagaa tggccgactg catccggcgc tgtcctgcct gttccgggtc gccgacggcc
     1021 tgcgcatgac cgcgcaccag atgcttttcg tccccttcgg cgagcccatg cgggcgccgg
     1081 attcaccggt caccgccgcc gaaatcttcg actacgccga gcgcaatcac gccttccttt
     1141 ccgagcacgg cgtctgcgcc ggaccccggg ccatggtcga ggaattcctg tccgtgatcc
     1201 ttgacggcaa gccgccggcc gatggtttgc cgttcgagct cgacgtcgag gtggtcgccg
     1261 ccctctgcga aatccagccg gcgctggact atggccttct cggcctcaag gcctacgccg
     1321 cggtgttttc gctgtggccc gccatggccc gcgcctacga ggccgtcgcc gcggctgtgg
     1381 cgtattgcgc cagggatggg acgccggcgg ccattgagct cgacgagcgg ttccgcggca
     1441 atatccagaa cgtccgcctg gccaccgaca tcggcgacga agaatggcgt gtaagccgcg
     1501 agacggtcta cgccgacatg tacgcccaat gcttccgggg cctgagcggc gctccgccga
     1561 cgcggccgct gccggcccgc ctggcgcctc agcggtcggc caccgcggct gccgcaagca
     1621 ttcagcttcg cgccgcgctg ctgtcccgcc tgggcgcgac gacgccgacc gtggcgctcg
     1681 acgtgctggc cgagaccatt ctcgatttcc tgctacgcga gcaggcggtt ttgcgcctcg
     1741 gaagcgagat ccagcgcgag atcaacgtcc atctcggccg gccccagccc ggccgtgcgt
     1801 tcagcggacg cgacgtcgat gtccacaaca tcctgcaggg cgccgagcag cggagcctgc
     1861 cctacctgct cgacgaactc gaggccgcct tcggcctgat catcgaggtc gacggagggt
     1921 ctctgattgt cgagcaaagg cggcggcttg atgggacaca tcaacaagat tcgaatgacg
     1981 tcggaccgac cgtctaacgc gccttggtgc gctcaattcg gagacgtgaa atgaagccgc
     2041 gacgcggccc tgaaagcgga ccttccgaac gtcgggcgtg agtcaggtgc ggccgtgagc
     2101 ccggtgcgct tttgagctcg gaacatcagc tcggcgcgac gccgccaacc cctggacctc
     2161 aaaggccggc cttggacgtc cggagggcga cgtgtaagag gcgggcctca ccccgcccag
     2221 gctttactcg caacgtcgcg tctcccatgt ctgaagaagc tcctccccta gatcgcgcca
     2281 aggcggccaa gccgctcccc aagccgggca tcacggacat ccacgcctat gtccccggca
     2341 aggccacggc caaggggatc gccgatccgg tcaagatgtc ggccaacgag aaccccct
//
LOCUS       DATAJL010000806         1510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98061,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000806 DATAJL010000000
VERSION     DATAJL010000806.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98061"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..>1510
                     /locus_tag="VHN39_15265"
     CDS             290..>1510
                     /locus_tag="VHN39_15265"
                     /inference="COORDINATES: protein motif:HMM:NF015083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxidase family protein"
                     /protein_id="HEX2817752.1"
                     /translation="MAGQHSTQPRGLAATRSPLAQGRFGRMFRNLTPATFGPTDADNV
                     ANLATLADQMTAGFDAPFDGPDPEESGIPALYTYLGQFIDHDITFDPVSLLTKAQDPD
                     GLIDFRTPALDLDNIYGRGPGDQPYMYDGSKFRLGDPLSGQGVPDAHDLPRFAGRALI
                     GDPRNDENSIVSQLQGLFHRFHNRMVDDNPGVDFATLQQRVRFHYQYMVLHDFLPRIV
                     TAPVLSALRTGSHFDQAKLKFFHWKHFPFMPVEFSVAAYRLGHSMIRPGYRLNDAADM
                     LLPIFPDPNLPGIVGLTGFQTMPQGRAIDWARFIDLGPARANGGDGQDADNAKRLQFA
                     YRIDPSLVNPLAMLPPEVASDPPSLPLRNLERGWRLGLPSGQSVAHAMGLTPLTDAEI
                     LIGKAVDVQDPGVTP"
BASE COUNT          231 a          577 c          462 g          240 t
ORIGIN      
        1 ccatctcacc gcctcctgcg cgtggaatgg ctgtgctgac gactaaagcg ctcggccgtg
       61 gccagggttg cggcgcccgc ggcgggattg ccgccgcgcg gctgcgtccg ggtgagcaac
      121 ccagagtcgc gaagcttgac ctcacgctct tttgaagacc gtcactgaac gctggtttgt
      181 ctactaccca gcgtagcgct tagctttgcc gtccccggca gagcgccgga cctgggagcc
      241 ggtggcgggc ctgcgcggtg cgggcctggg ccggacggag gagacggtca tggccggtca
      301 acacagcacc caaccccgcg gccttgccgc cacccgctca ccgctggccc agggccggtt
      361 cgggcggatg ttccgcaacc tgacgccggc gaccttcggc cccaccgacg ccgacaacgt
      421 cgccaacctg gctacgctgg ccgatcagat gaccgccggc ttcgacgccc ccttcgacgg
      481 tcccgacccc gaggagagcg gcattccggc cctctacacc tacctgggcc agttcatcga
      541 ccacgacatc accttcgatc ccgtcagcct gctcaccaag gcgcaggacc ccgacggcct
      601 gatcgatttc cgcaccccgg cgctggacct ggacaacatc tacggccgcg gccccggcga
      661 ccaaccctac atgtatgacg gctcaaagtt ccgcctgggc gaccccttga gcgggcaggg
      721 ggtccccgac gcccacgacc tgccgcgctt cgccggccgc gccctgatcg gcgatccccg
      781 caacgacgaa aactccatcg tctcccagct gcagggcctg ttccatcgct tccacaaccg
      841 catggtggac gacaatccgg gcgttgattt cgccaccctc cagcagcgcg tccgcttcca
      901 ctaccaatac atggtgctgc acgatttcct gccgcgcatc gtcaccgccc cggtgctcag
      961 cgcgctcagg accgggagcc acttcgacca ggccaagctg aagttcttcc actggaagca
     1021 ctttcccttc atgccggtgg agttctcggt ggcggcctac cggctgggcc attcgatgat
     1081 ccggccgggc taccggctga acgacgcggc cgacatgctg ttgccgatct tccccgatcc
     1141 gaacctgccg ggcatcgtcg gcctgaccgg gttccagacc atgccgcagg gccgcgcgat
     1201 cgactgggcc cggttcatcg acctcggccc ggcgcgggcc aacggcggcg acggccagga
     1261 cgccgacaac gccaagcgcc tgcagttcgc ctaccggatc gatccgtcgc tggtgaaccc
     1321 cttggccatg ctgccgccgg aggtggcctc cgatccgcca tccctgccgc ttcgcaacct
     1381 ggagcgcggc tggcgcctcg gcctgccgtc cggccagtcg gtggctcacg ccatgggcct
     1441 gacgccgctc accgacgcgg agatcctcat cggcaaggcg gtggacgtgc aggacccggg
     1501 cgtcacgcct
//
LOCUS       DATAJL010000807         3372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85269,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000807 DATAJL010000000
VERSION     DATAJL010000807.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85269"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..287
                     /locus_tag="VHN39_15270"
     CDS             <1..287
                     /locus_tag="VHN39_15270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006273797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEX2817753.1"
                     /translation="AKAGRAGGGHTHAWVRVFLPSCGWVEFDPTNGIVGNADLVRVAI
                     ARDPRQATPLHGTWAGLPTDYLGMDVEVEVSVEDCADAQPAPLKRVAQGR"
     gene            306..1115
                     /locus_tag="VHN39_15275"
     CDS             306..1115
                     /locus_tag="VHN39_15275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006273798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEX2817754.1"
                     /translation="MRIRAGYEITYECPQPTPMLLMLNVHSSRYQDLETPDVIRTDPQ
                     LAVTQYHDAFGNLCSRVVLPAGRTALSADFVVRDSGLPDAIAPEAIQHPVEDLPNEVI
                     VFLLASRYCETEHLSNLAWSLFGDLTPGWGRLQAILDYAHNRITFGYEHARPTKTAFE
                     AHEEGFGVCRDYAHLAITLCRCMNIPARYCTGYLGDIRWPVHGEMDFSAWVEVFLGGR
                     WHTVDARHNTPRVGRVLMARGRDATDAAITTSFGPNTLAGFKVISDELPDA"
     gene            1289..3304
                     /locus_tag="VHN39_15280"
     CDS             1289..3304
                     /locus_tag="VHN39_15280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817755.1"
                     /translation="MNGAKLGVLALLASTAALCGFAASDTTAPSALAHGSGVAATAPA
                     KVDNFMLVDADMEAHELYRLADAKAVVIVTQANGDAVARNLAPALKSLKAAYGAKGVE
                     FVMLNSSLKDTREAIQAEAAKVGFDTPILMGSNQLVGESLGVTRSAEVLVVDPKTWTV
                     AWRGAMPGASKALDALTAGQPVTVASGASSKGALIAFPERGATKVSYSKDIAPILEAK
                     CVACHEEGGIGPFAMTNYAMVKGFSPMIREVIRTDRMPPYHADPHVGKFSDDQRLSSD
                     QVKTLVHWIEAGSPRGDGPDPLGATKHVAKEWPLGKPDLLISVPAYTIPASGVVDYQR
                     PAVASPLTEGKWVRAATVKPGSRQGVHHLLTGWMAEMPADGHSSETKWAASLGAGYAV
                     GAESNMEPANAGVYLPPGGAIGFQAHYTPFGKEVVDKSQIALYFYDKPPELIMHSVVV
                     IDNTIVIPPNEARHKEVAYVTFPHDALLYSAFPHAHYRAYSSDLWIRYPDGKEKLLLS
                     LPRYDFNWQRSYTFAEPVKVPAGSKLVAHYVYDNSKRNPSNPDPNRQITWGEQSWEEM
                     LFTSLSYRWTDETATHRVNYEGEMNANRLMGMLDDNLDGKIEKSELKGRIGDMLAKYW
                     DVLDKNHDGVLDAGEFAAAQAMMGPRRKAEAASPPTAAPATPTAGGK"
BASE COUNT          582 a         1173 c         1115 g          502 t
ORIGIN      
        1 cggccaaggc cggccgggcc ggcggcggcc atacccacgc ctgggtcagg gtcttcctgc
       61 cctcctgcgg ctgggtggag ttcgatccga ccaacggcat cgtcggcaac gccgatctgg
      121 tccgcgtggc gatcgcgcgc gatccccgac aggccacgcc cctgcacgga acatgggcag
      181 gcctgcccac cgactatctg gggatggacg tggaggtgga ggtttccgtg gaagactgcg
      241 cagatgcgca accagccccg ctgaagcgtg ttgcacaggg acgctgatcg ccaattagga
      301 cacccatgcg cattcgagcc ggctacgaga tcacctatga gtgtccgcag cccacgccga
      361 tgctgctgat gctcaacgtc cattcgtcgc gctaccagga ccttgagacc ccggacgtca
      421 tccgcacgga cccgcagctg gcggttaccc agtatcatga cgccttcggc aatctctgca
      481 gccgagtggt cctgccggcc ggccgcacgg ccctgtcggc ggatttcgtg gtgcgcgaca
      541 gcggcctgcc ggacgcgatc gcgccggagg ccatccagca tccggtggaa gacctgccca
      601 acgaggtgat cgtcttcctg ctggccagcc gctactgcga gaccgagcac ctgagcaacc
      661 tggcctggtc gctgttcggc gatctcacgc ccggctgggg gcggctgcag gcgatcctgg
      721 actacgcgca caaccggatc accttcggct acgagcatgc ccggcccacc aagacggcgt
      781 tcgaggcgca cgaggagggc ttcggcgttt gccgcgacta cgcacacctg gccatcacgc
      841 tttgccgctg catgaacatc ccggcgcgct actgcacggg ctacctgggc gacatccgct
      901 ggcccgtgca cggcgagatg gatttcagcg cctgggtcga ggtctttctc ggcggccgct
      961 ggcacacggt cgacgcccgc cacaacaccc cgcgggtcgg gcgcgtgctg atggcgcggg
     1021 ggcgcgatgc gacggacgcg gccatcacca caagcttcgg acccaacacg ctggcgggct
     1081 tcaaggtgat cagcgacgag cttcccgacg cctaggcgcc cacgggcgca tccaaaaacc
     1141 acagcggcgg cgactagcca atgacacgag gtcgcatacg cgcgcggcaa tattcgtgta
     1201 acgttggtgg gcgatatacg ccgtaagtcc gcacgcgatc cgcgtggtgc gagcggttga
     1261 gtcgtcggcg accttgggag ctatctcgat gaacggtgca aaacttggcg ttctggcgct
     1321 gctggccagc acggccgcgc tctgcggctt cgcggcgagc gacacgacgg cgcccagcgc
     1381 gctggcccac ggctccggcg tggccgcgac ggcgccggcc aaggtcgaca acttcatgct
     1441 ggtggacgcc gacatggagg cccacgagct ctatcgcctg gccgacgcca aggcggtggt
     1501 gatcgtgact caggccaacg gcgacgcggt cgcgcgcaac ctggcgccgg ccctcaagag
     1561 cctgaaggcc gcctatggcg ccaagggcgt cgagttcgtg atgctgaact ccagcctcaa
     1621 ggacacccgc gaggcgatcc aggccgaggc cgccaaggtc ggcttcgaca ccccgatcct
     1681 gatgggtagc aatcagctgg tgggcgagag cctgggcgtg acccgctcgg ccgaggtgct
     1741 ggtggttgat cccaagacct ggaccgtggc ctggcgcggc gcgatgccgg gcgcgagcaa
     1801 ggcgctcgac gcgctgaccg ccgggcaacc ggtaacggtg gcgagcgggg cgtccagcaa
     1861 gggcgcgctg atcgccttcc ccgagcgcgg cgcgacgaag gtctcctatt ccaaggacat
     1921 cgccccgatc ctggaggcca agtgcgtggc ctgtcacgag gaaggcggca tcggcccctt
     1981 cgccatgacc aactacgcca tggtcaaggg cttctcgccg atgatccgcg aggtgatccg
     2041 caccgaccgc atgccgccct atcatgccga tccgcacgtc gggaaattct ccgatgacca
     2101 gcggctgtcc tccgatcagg tgaagaccct ggtccactgg atcgaggccg gctcgccgcg
     2161 cggcgacggg cctgacccgc tgggcgcgac caagcacgtg gccaaggagt ggccgctggg
     2221 caagccggac ctcttgatca gtgtgccggc ctacacgatc cccgcctccg gcgtggtcga
     2281 ctaccagcgc ccggccgtcg ccagcccgct gaccgagggc aaatgggtcc gggccgcgac
     2341 cgtcaagccc ggctcgcgcc agggcgtgca ccacctcttg accggctgga tggccgaaat
     2401 gccggcggat ggccactcgt cggagaccaa gtgggccgcc tcgctgggcg cgggctacgc
     2461 ggtcggcgcg gagtccaaca tggagcccgc caacgccggg gtctacctgc cgccgggcgg
     2521 cgccatcggc ttccaggccc actacacccc gttcggcaag gaagtggtcg ataagagcca
     2581 gatcgcgctc tacttctacg acaagccgcc ggagctgatc atgcattcgg tggtggtgat
     2641 cgataacacc atcgtcatcc cgcccaacga ggcgcggcac aaggaagtgg cctacgtcac
     2701 cttcccgcac gacgcgctgc tctattcggc gttcccgcac gcccactacc gggcctattc
     2761 gtcggacctg tggatccgct atccggacgg caaggagaag ctcctgctct cgctgccccg
     2821 ctacgatttc aactggcagc ggtcctacac cttcgccgag ccggtgaagg tgcccgcggg
     2881 ctccaagctg gtcgcccact acgtttacga caactccaag cgcaacccgt ccaaccccga
     2941 cccgaaccgg cagatcacct ggggcgaaca gtcctgggag gagatgctgt tcacctcgct
     3001 cagctaccgc tggactgacg agacggccac gcaccgggtg aactacgagg gcgagatgaa
     3061 cgccaaccgc ctgatgggca tgctggacga caacctcgac ggcaagatcg agaagtccga
     3121 gctgaagggc cgcatcggcg acatgctcgc caagtactgg gacgtgctcg acaagaacca
     3181 cgacggcgtg ctggacgcgg gtgagttcgc cgccgcccag gcgatgatgg gcccgcgccg
     3241 caaggccgag gccgcgtcac cgcccaccgc cgcccccgcc acgccgacgg ccggcgggaa
     3301 gtagttccgg ccgagacggc agagttgaag acgccggggt tcgcgccccg gcgtttttcc
     3361 ttgcctatcg ca
//
LOCUS       DATAJL010000808         9366 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98083,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000808 DATAJL010000000
VERSION     DATAJL010000808.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9366
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98083"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..237)
                     /locus_tag="VHN39_15285"
     CDS             complement(<1..237)
                     /locus_tag="VHN39_15285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817756.1"
                     /translation="MDTATAIARDIAALPQRDTASLRTVRKAWSKGLRLAPAGDVLAA
                     AEGLEAKAGQGGKWIAYELIRFHPGALAAVTEAQI"
     gene            complement(280..891)
                     /locus_tag="VHN39_15290"
     CDS             complement(280..891)
                     /locus_tag="VHN39_15290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817757.1"
                     /translation="MSKAFGRWAGACLAGAGVLTFAINAFLTPFLPHAEVYASPIFLW
                     RQGASALAAVLLLFGAIGVYFHQADRAGRFGAAAFGVALIGSALLLAEEWNEIFLMRD
                     LGLRVPDALARLDAGPGLKLYDLGSLIPFVTFVLGWIALCTSTLRTRALSRRAAGLVI
                     AGFFATPLLSAVLPGFWGGVLGNAILGGGLAWLGVDLLKASRL"
     gene            complement(915..1970)
                     /gene="pseI"
                     /locus_tag="VHN39_15295"
     CDS             complement(915..1970)
                     /gene="pseI"
                     /locus_tag="VHN39_15295"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEX2817758.1"
                     /translation="MNESPHIEIAGRRIGADQPPYVICELSGNHNGSLDRALSLIDAA
                     AATGCDAIKIQTYTADTITLDVDRPEFRITGGLWDGRSLHELYQEAQTPYEWHAALFA
                     RAAERGVTLFSSPFDETAVDLLAGLGAPAYKIASFEAVDLPLIRYAAKQGKPLIISTG
                     MANLAEIEAARTAALEAGAAGVVLLHCVSSYPADLADANVRTVADMAGRFASPIGLSD
                     HTHGTAASVAAIAMGASVIEKHFTLARADGGPDAAFSLEPAEFTALVRDCKDAWTALG
                     RAHYDLLGSERANRQFRRSLYVTADVKAGEPLTRANIRSVRPGEGLPPAHLDEVLGRP
                     AARDLSRGEPLAWDMLG"
     gene            complement(2021..2218)
                     /locus_tag="VHN39_15300"
     CDS             complement(2021..2218)
                     /locus_tag="VHN39_15300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817759.1"
                     /translation="MQAELKTAGVIGLVGAALGAGVALGLGLRFFSAVAMVGLGTGIA
                     LGLVAGSKPRTLIVESSPPLL"
     gene            2253..3278
                     /gene="trxB"
                     /locus_tag="VHN39_15305"
     CDS             2253..3278
                     /gene="trxB"
                     /locus_tag="VHN39_15305"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEX2817760.1"
                     /translation="MSQDRSDPRPEARQVRCLIVGSGPAGYTAAVYAARALLNPVLIQ
                     GIQPGGQLTITTDVENYPGFAEVIQGPWLMDQMQAQAEHVGTEVINDIVLTADLSQRP
                     FRLTTDSGQVWLAETLIIATGAQAKWLGIASEQKFQGFGVSACATCDGFFYRGKEVVV
                     VGGGNTAVEEALFLTNFASKVTVVHRKDEFRAEKILQERLFAHSKIEVVWEHMIDEVT
                     GSTDPMGVTGVRLKNVKTGETKDLSCDGVFIAIGHAPASELFKGQLAMDASGYLDVKP
                     GTASTAIEGVYAAGDVTDDIYRQAVTAAGMGCMAALEAVRFLAEEDHREAQHPISHHE
                     AEKIGVW"
     gene            3285..3788
                     /locus_tag="VHN39_15310"
     CDS             3285..3788
                     /locus_tag="VHN39_15310"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEX2817761.1"
                     /translation="MIRYAKAGDHQAIAGVLEAAFGRPDEAELVARLRADEDVMFELI
                     AEEDGEVAGHILFSRLWADRFELYGALAPLAVHPSRHRQGLGSKLVRSGLECAREFGC
                     FGLLVLGDPAYYGRFGFSAAAAGEVNAPYRGLVAFQALALEEDAFAGALSVAYPDAFS
                     GAPSRPL"
     gene            complement(3795..4919)
                     /locus_tag="VHN39_15315"
     CDS             complement(3795..4919)
                     /locus_tag="VHN39_15315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall hydrolase"
                     /protein_id="HEX2817762.1"
                     /translation="MLWAAMALCACAPVAKHASTPEGQLLAARGFSDPALIAATANFD
                     PALRDLATRHDPGLRHPDLWGRPLGWSNLDLRQIPDLGIPLEQGDDAVALNNLRPFAG
                     LPIRPMRPFVLSADADDSARALHCMTQAIYYEAAREPVRGQQAVAQVVLNRLRHPAYP
                     KSVCGVVYQGSARPTGCQFTFTCDGALRWQPQAGLWRQAQDVAKRALAGFVDKDVGSA
                     THYHAAYVIPYWAPTLVKMTQVGQHIFYRWTGPWGEPPAFNGHYAGRESELSPALLAS
                     LDPRTQGYLAAPAPPVEHKVTLAVAGVVQTYTVADPTTASSERTRVAGALYPARRQPT
                     PEEIKRINDSLAVMEKGQDASAKAAPGPKAEAQSTANVPG"
     gene            5204..7195
                     /locus_tag="VHN39_15320"
     CDS             5204..7195
                     /locus_tag="VHN39_15320"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817763.1"
                     /translation="MTPSEWPLRFVPRRTPPLWQAALITLATFAGAIAIRGLMLGFDN
                     ATGLSATYFPAFILATLYAGPRWGWASLIGVMLVGYFGNTSVVANVSRDMLMIQFAFS
                     GVATVLVAAGLREALLRLDESKAAEAKVQADLIATEQRFRMLADSAPVLMWLSKVDGT
                     REFVNRAYLEFLGLDNEAALAFDWRALIHPDDLARIAAEDEAVRIHGGDFVWEARYRR
                     TNGEYPWIRSVSQRRFGPEGELSGYIGVGYDISDARRAQADLTRINDLLAERVQAALA
                     ERDEAEAALRRAQKLEAVGQLTGGVAHDFNNLLTVIIGALDLIQRHPNDEARRDRMIE
                     AAQGAAKRGERLTQQLLAFSRRQALKPELVVVDELLAESAPLLRRAVGEAVTLTVAPG
                     APGAVSSIDPSQFEAAVMNLVVNARDATPPGGGIRVETRLCTLAAREAEDAPAGEYLC
                     VSVHDTGEGMDADTVARVFEPFFTTKEPGRGTGLGLSQVYGFGRQSGGAVIVDSTPGK
                     GASVRVYLPLAEAGDGRPAARPDATVTAQGPARRVLLVEDDASVGEMVEAMLTDLGHV
                     VLRAEAAAPALAILKRSDRIDLMLTDLIMPGGMNGVELAHAAVALRPGLPVILTSGYT
                     GETLGAAAEAPWPLLAKPYPAEALAAVIEAVMGRAPEDA"
     gene            7381..8466
                     /gene="nadA"
                     /locus_tag="VHN39_15325"
     CDS             7381..8466
                     /gene="nadA"
                     /locus_tag="VHN39_15325"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEX2817764.1"
                     /translation="MAADGFQFAFTPDVEAATAPVWEKVKHHVTPMEWRAQAPLIAAI
                     NRLKAEKGAVILAHNYMVPEIFHGVGDYVGDSLGLAKEAAKSKARVIVQAGVHFMAET
                     SKILSPDKTVLIPDLRAGCSLAASITGADVRLIKQRYPGVPVVTYVNTTAEVKAETDI
                     CCTSANAIQVVEEAARLWGTDRVILIPDEFLARNVARQTDVHIIAWQGRCEVHERFTA
                     ADIAEIREAYPDAEVLAHPECPAEVIVASDFAGSTAAMNDYVITRKPKRVVLITECSM
                     ADNVAADAPDTEFVRPCVLCPHMQRITLTNIHEALVHGQHEVTIDPDIADRARLAVQR
                     MIDLPRPAVPARYDLVKARHHVDVELI"
     gene            8466..9347
                     /locus_tag="VHN39_15330"
                     /pseudo
     CDS             8466..9347
                     /locus_tag="VHN39_15330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
BASE COUNT         1433 a         3221 c         3320 g         1392 t
ORIGIN      
        1 gatctgagcc tccgtgacgg cggccagggc tcctggatgg aagcggatca gttcgtacgc
       61 gatccacttg ccgccctgcc ccgccttggc ttccagccct tcggccgcag cgaggacgtc
      121 gccggccggc gcgaggcgca gccccttcga ccaggccttg cggaccgtgc gaagggacgc
      181 cgtgtcccgc tgcggcaggg cggcgatgtc gcgggcgatg gcggtcgcgg tatccatggc
      241 ctcaggtgcg caggtcccag gctggggctt ggctccgcgt cataggcggc tggccttcag
      301 aaggtcaacg ccgagccagg ccaggccacc gcccaggatc gcgttgccga ggacgccgcc
      361 ccagaacccg ggcagcacgg cgctcaacag aggtgtggcg aaaaagcccg cgatcaccag
      421 gccggctgcc cggcgcgaca gggcccgggt gcgaagggtg ctggtgcaga gcgcgatcca
      481 gcccaggacg aaggtgacga acgggatcag gctgccgagg tcatagagct tgagccccgg
      541 gcccgcgtcc agccgcgcca gggcgtccgg gacccgaagc cccaggtcgc gcatgaggaa
      601 gatctcgttc cattcctcgg ccagcagcag ggcgctgccg atcaacgcga cgccgaacgc
      661 ggccgcgccg aagcggccag cgcggtccgc ctgatggaaa tagaccccga tcgccccgaa
      721 cagcagcagc accgccgcaa gcgccgacgc gccctggcgc cagaggaaga tcggcgaggc
      781 gtagacctct gcatgcggca ggaacggcgt cagaaaggcg ttgatcgcga aggtcaggac
      841 gccggcgccc gcgagacacg cgcccgccca gcggccgaaa gccttgctca tgatcaggtc
      901 cccggggcga cgccctagcc aagcatatcc caggcgagcg gttcgccgcg cgaaagatcg
      961 cgcgccgcgg ggcggccgag cacctcatcc agatgagccg gcggcaggcc ctcgcccggc
     1021 cgcacggagc ggatgttggc gcgggtcagg ggctcaccgg ccttgacgtc ggcggtgacg
     1081 tagagcgagc ggcggaactg gcggttggcc cgttccgagc ccaggaggtc gtagtgggcg
     1141 cgccccagcg cggtccaggc gtccttgcag tcgcggacca gggcggtgaa ctcggcgggc
     1201 tccaggctga aggccgcatc cgggccgccg tcggcgcgag cgagggtgaa gtgcttttcg
     1261 atgacgctgg cccccatggc gatcgccgcc accgaggccg ctgtgccgtg agtgtggtcg
     1321 gaaaggccga tggggcttgc gaaccgcccg gccatatcgg cgacggtgcg gacattggcg
     1381 tcggcgaggt cggccggata gctggagacg cagtggagca gcacgacccc ggccgcgccc
     1441 gcctccagcg ccgcggtgcg cgcggcctcg atctcggcga gattggccat gccggtggag
     1501 atgatcagcg gcttgccctg tttggcggca tagcggatca gcggcagatc cacggcctcg
     1561 aaggaggcga tcttgtaggc cggcgcgcca aggcccgcga gcaggtcgac ggcggtctcg
     1621 tcgaaggggc tggaaaacag ggtgacgccc cgctcggcgg cgcgggcgaa cagcgccgca
     1681 tgccattcgt agggagtctg ggcctcctga tagagctcgt gcaggctgcg cccgtcccac
     1741 aggccgccgg tgatcctgaa ctccggccgg tcgacatcca gcgtgatggt gtcggcggtg
     1801 taggtctgga tcttgattgc gtcgcagccg gtggcggcgg ccgcatcgat caggctgagc
     1861 gcgcggtcca ggctgccgtt gtggttcccc gacagctcgc agatcacgta aggcggctgg
     1921 tccgccccga tcctgcggcc ggcgatctcg atgtgagggg actcgttcat tgccgggcag
     1981 tctacgccct gccgctgaaa cggtcgttaa ccctgagcgg tcagaggagt ggcgggctgg
     2041 actcgacgat aagggtcctc ggcttggatc cggcgacgag gccgagcgcg atccccgtgc
     2101 ccagcccgac catggccacg gcggagaaga accgcagccc caggcccagc gcgacgccgg
     2161 cgcccagcgc tgcgccgacc aggccaatca cgccggcggt tttcaattcg gcttgcatgc
     2221 agagctccag aatcgcacct acattaagag acatgtccca ggatcgttcc gacccccgcc
     2281 ccgaagctcg ccaggtccgc tgcctgatcg ttggatcggg cccggccggc tacaccgccg
     2341 cggtctacgc cgcgcgcgct ctgctaaacc ccgtgctgat ccaggggatt caacccggcg
     2401 gtcagctgac catcaccacc gatgtggaga actatccggg cttcgccgag gtcatccagg
     2461 gaccctggct gatggaccag atgcaggccc aggccgagca cgtggggacc gaggtcatca
     2521 acgacatcgt gctcactgct gacctgtcgc aacggccgtt ccggctgacc accgattcgg
     2581 gccaggtgtg gctcgccgag accctgatca tcgccaccgg cgcccaggcc aagtggctgg
     2641 gcattgcctc cgaacagaag ttccagggct tcggcgtctc ggcttgcgcg acctgcgacg
     2701 gctttttcta ccgcggcaag gaggtcgttg tggtcggcgg cggcaacacc gctgtcgagg
     2761 aagccctctt cctcaccaac tttgcctcta aggtcacggt cgtgcaccgc aaggacgagt
     2821 tccgggctga gaagattctg caggagcgct tgttcgccca ctccaagatc gaggtggtct
     2881 gggaacatat gatcgacgag gtgaccggtt ccaccgatcc catgggcgtg acgggggtcc
     2941 gactgaagaa cgtcaagacc ggcgagacga aggacctttc ctgcgacggg gtgttcatcg
     3001 ccatcggcca cgccccggcc tcggaactgt tcaagggcca gctggcgatg gacgcgtcgg
     3061 gctatctgga cgtgaagccc ggcaccgcgt cgacggccat cgagggcgtc tatgcggcgg
     3121 gcgacgtgac cgacgacatc taccgccagg ccgtgactgc cgccggcatg ggctgcatgg
     3181 ccgcgctcga agccgtgcgg ttcctggccg aggaagatca ccgcgaggcc caacatccga
     3241 tcagccacca cgaggccgag aagatcggcg tctggtaggg gccaatgatc cgctacgcca
     3301 aggccggcga ccatcaggcg atcgccggcg tgctggaggc ggccttcgga cggcccgacg
     3361 aggcagagct ggtggctcgg ttgcgcgctg acgaggacgt catgttcgag ctgatcgctg
     3421 aggaagacgg cgaggtcgcg ggtcacatcc tcttcagccg cctgtgggcc gaccggttcg
     3481 agctctatgg ggcgctggcc ccgctggccg ttcacccgag ccgccatcgc cagggccttg
     3541 gctcgaagct ggtgcgcagc ggcctggagt gcgcgcgcga attcggctgc tttggcctct
     3601 tggtgctggg cgatcccgcc tattacggcc gcttcggctt ttcggcggcg gcggcaggcg
     3661 aggtcaatgc gccctatcga ggcctcgtgg ccttccaggc gctggcgctt gaggaggacg
     3721 ccttcgccgg cgccctcagc gtcgcctacc cggacgcctt ctcgggcgcg ccttcgcgac
     3781 cgctctagcc gccgtcagcc ggggacgttt gccgtgctct gggcttccgc cttggggccc
     3841 ggcgcggcct tggccgaggc atcctggccc ttttccatga ccgccaggct gtcgttgatg
     3901 cgcttgatct cctccggcgt cggctgacgg cgcgccgggt agagggcgcc ggcgacccgg
     3961 gtgcgctcgc tgctggcggt ggtcggatcg gcgacggtgt aggtctgcac cacacccgcg
     4021 acggccaggg tgaccttgtg ctcgaccggc ggcgccggag cggcgagata gccctgggtg
     4081 cgagggtcga ggctcgccag gagcgccggc gacagctcgg actcgcggcc tgcgtagtgg
     4141 ccgttgaagg ccggcggctc gccccacggc ccggtccagc ggtagaagat gtgctggccc
     4201 acctgggtca tcttgaccag cgtcggcgcc cagtacggga tcacataggc cgcgtgatag
     4261 tgggtggccg agcccacatc cttgtcgacg aagcccgcca gcgcgcgctt ggccacgtcc
     4321 tgggcctgcc gccacagccc cgcctgcggc tgccagcgca gcgccccgtc gcaggtgaag
     4381 gtgaactggc agccggtggg ccgggccgag ccctggtaga ccacgccgca gaccgacttg
     4441 ggataggccg ggtgccgcag ccggttcagc accacctggg ccacggcctg ctggccgcgc
     4501 accggctcgc gggcggcctc gtaatagatc gcctgggtca tgcagtgcag ggcgcgcgcg
     4561 ctgtcgtcgg cgtcggcgct gagcacgaag ggccgcatcg gccggatcgg caggccggcg
     4621 aaggggcgca ggttgttcag cgccaccgca tcgtcgccct gctcaagcgg gatgccgaga
     4681 tcgggaatct ggcgaaggtc caggttgctc catcccagcg gccggcccca gaggtcggga
     4741 tggcgcaggc cagggtcgtg gcgcgtcgcc aggtcgcgca gcgccggatc gaagttggcg
     4801 gtggcggcga tcagcgctgg atcggaaaag ccacgggccg ccagcagctg cccctccggc
     4861 gtcgaggcat gcttcgccac cggcgcgcag gcgcagagcg ccatcgccgc ccaaagcacg
     4921 gccgaggtcc tggccgtcgc caggccggcg cggcgccatc tgtcggaaaa gccttggatc
     4981 ttgtcgtctt ccctatttca gccctgacgc tctctcccga gggtagatac gggtcgcgtc
     5041 acgggttagg ccgcaaatcg gccaaaagat gaacaagcga cgccggaacg gaacacccgc
     5101 caagcggcct aggctcatat cctcggttgc gccccaccgc cagcgctccc attctgacct
     5161 cggcaggccg agcttgcagt ttgtgtgccg gagacgcctt cgaatgacgc catccgaatg
     5221 gccgctacgg ttcgtccccc gccgtacgcc accgctgtgg caagccgcgc tgatcactct
     5281 ggcgaccttc gcgggcgcga ttgcgatccg cgggctgatg ctgggcttcg acaacgcgac
     5341 cgggctttcg gccacctatt tcccggcatt catcctcgcc accctctacg ccggcccgcg
     5401 ctggggctgg gcgtcgctga tcggtgtcat gctggtcggc tacttcggaa acacctccgt
     5461 agtcgcgaac gtctcgcgcg acatgttgat gatccagttc gccttttcgg gcgtcgccac
     5521 cgtgctggtg gccgcgggct tgcgcgaagc cctgctgcgg ctggatgaat ccaaggcggc
     5581 cgaggccaag gtccaggccg acctgatcgc caccgagcag cggttccgga tgctggccga
     5641 cagcgcgcct gtgctgatgt ggctctccaa ggtcgatggg acccgggagt tcgtgaaccg
     5701 cgcctatctc gagttcctgg gcctggacaa cgaggccgcg ctggctttcg actggcgcgc
     5761 cctgatccac ccggacgatc tggcgcggat cgccgccgaa gatgaggccg tccggatcca
     5821 cggcggtgac ttcgtctggg aggcgcgcta ccggcgaacc aatggcgaat atccctggat
     5881 ccgctcggtg tcccagaggc gtttcggccc ggagggcgag ctctcgggct acatcggcgt
     5941 cggctacgac atcagcgacg ccaggcgggc gcaggcggac ctgacgcgga tcaacgacct
     6001 cttggccgaa cgcgtgcagg ccgcgctcgc cgagcgcgac gaggccgagg cggcgctccg
     6061 ccgggcccag aagctggagg ccgtgggcca gctcaccggc ggtgtggcgc acgatttcaa
     6121 caatcttctg accgtgatca tcggcgcgct cgacctgatc cagcgccatc cgaatgatga
     6181 ggcccgccgc gaccggatga tcgaagccgc gcaaggcgcg gccaagcgcg gcgagcgcct
     6241 gacccagcag ctgctcgcct tctcgcggcg ccaggcgctg aaaccggaac tggtggtggt
     6301 cgacgagttg ctggcggaga gcgcgcccct gctgcgccgc gcggtcggcg aggccgtgac
     6361 cctgaccgtg gcgcccggcg cgccaggggc ggtcagcagc atcgacccaa gccagttcga
     6421 agccgcagtg atgaacctgg tggtcaacgc ccgcgacgcg acgcctccag gcggcggcat
     6481 ccgggtggag acacgtctct gcacgctggc ggcccgcgaa gccgaggacg cgccggccgg
     6541 cgagtacctg tgcgtctcgg tgcacgacac tggcgagggc atggacgccg acaccgtcgc
     6601 ccgggtcttc gagcccttct tcaccaccaa ggagcccggg cgcggcacgg gccttggcct
     6661 cagccaggtc tacggcttcg ggcggcagag cggtggggcg gtgatcgtcg acagcacgcc
     6721 cggcaagggg gcgtcggtgc gcgtctacct gccgctggcc gaggccggcg acgggcgccc
     6781 ggcagccagg ccggacgcga ctgtgaccgc gcagggtccg gcgcggcgcg tgctgctggt
     6841 cgaggacgac gccagcgtcg gcgaaatggt cgaggccatg ctcaccgacc tcggccatgt
     6901 ggtgctacgc gccgaggccg cagcgcctgc gctggccatc ctgaagcgtt ccgacaggat
     6961 cgacctgatg ctcaccgacc tgatcatgcc gggcggcatg aacggggtgg agctggccca
     7021 cgccgccgtc gcgctgcgcc ccggcctgcc ggtgatcctg acctcgggct acaccggcga
     7081 gaccctgggc gcggctgccg aggcgccctg gcccctgctc gccaagccct accccgccga
     7141 ggccctcgcc gcggtgatcg aggcggtgat gggcagggcc ccggaagacg cctgagccga
     7201 tcttcgcatt tctctgactt gcgtccgccg aggatcggcc tatatctgat taggctctta
     7261 tgctcggatt gagcataagc gtcagtatgg agcgccagcg ggtcccgtac ccttggaggg
     7321 gcctcgtctg gcgtcttttt agaccgcaga aatgctcatt ttgagcataa ggaggctccc
     7381 atggccgccg acgggttcca gttcgccttc acccccgatg tcgaggccgc tacggcgccg
     7441 gtgtgggaga aggtcaaaca ccacgtcacg ccgatggaat ggcgcgccca ggctccgctg
     7501 atcgccgcca taaatcgcct gaaggccgag aagggcgcgg tgatcctggc gcacaactac
     7561 atggtcccgg agatcttcca cggggtcggc gactatgtcg gcgacagcct cggcctggcg
     7621 aaggaggcgg ccaaatcgaa ggcccgtgtg atcgtccagg ccggggttca cttcatggcc
     7681 gagacgtcga agatcctctc gccggacaag accgtgctga tcccggacct gcgggccggc
     7741 tgcagcctcg ccgcctcgat caccggtgcc gacgtcaggc tgatcaagca gcgctatccc
     7801 ggcgtgccgg tggtgaccta cgtcaacacc accgccgagg tgaaggcaga gaccgacatc
     7861 tgctgcacct cggccaacgc catccaggtg gtcgaggagg ccgcgcggct gtggggcaca
     7921 gaccgggtga tcctgatccc cgacgaattc ctcgcccgca acgtggcgcg ccagaccgac
     7981 gtgcacatca tcgcctggca gggccgctgc gaggtgcacg agcgcttcac cgccgccgac
     8041 atcgccgaga tccgcgaagc ctatccggac gccgaagtgc tggctcaccc ggaatgcccg
     8101 gccgaggtga tcgtggcgtc cgacttcgcg ggctcgaccg cggcgatgaa cgactacgtc
     8161 atcacgcgga aacccaagcg ggttgtgctg atcaccgaat gctccatggc cgacaatgtc
     8221 gcggccgacg ctccggacac cgagttcgtg cggccctgcg tgctctgccc gcacatgcag
     8281 cggatcactc tgaccaacat ccacgaggcc ctggtgcacg gccaacacga ggtgaccatc
     8341 gatccggaca tcgctgaccg cgcgcggctg gcggtgcagc ggatgatcga cctgccgcgg
     8401 ccggccgtcc cggcccgcta cgatctggtc aaggcgcgcc atcacgtcga cgtggagctg
     8461 atctgatgcg gcgcctcgcc cacgacgggg tgctcgtggt gggcgccggc ctggcgggcc
     8521 tttccgccgc cctcgccgct gcgccacgca aggtgctggt gctgaccgac gcgcccctca
     8581 gccagggctg cgcctcggcc tgggcgcagg gcggcgtcgc cgccgcgctt tcggacggcg
     8641 acagcgcaga agcccacgcc gccgacaccg tcgcggccgg cgccggcttg gtgaaccccg
     8701 ccatggcgcg gctcctgacc gaagaaggtc ccgcggcggt ccgcgcgctg gccgccctcg
     8761 gggcgccgtt cgaccgcacg gcgagcgggg acttcgccca gagcctggag gcggcccatt
     8821 cacagccgcg cgtcgcccgc gtgaaaggcg accaggccgg cgcagcgatc atgcaggcgg
     8881 tggtcgccgc cgtgctggcg gcgccgcata tcgaggtgcg catcggccac cgcctggccg
     8941 gcctgttgca ggacgccggt ggccgcgtgc gcggcgtggt cgccgaacat gacggcgcgc
     9001 tggccgaaat cacggcgcct gcgacaatcc tggcgaccgg cgggatcggt gggctctacg
     9061 ccgtcaccac gacgccggcg gagctcatgg gagaaggcct ggggctcgcg gcgctggccg
     9121 gcgcggtggt cgccgatccg gagttcgtgc agttccaccc cacggccatc gacatcggcc
     9181 gcgatcccgc gccgctggcc accgaggcgc tgcgcggcga aggcgccgtg ctggtcgacg
     9241 gggcgggaga gcggttcatg gcccgctatc acaccgatgc cgagctcgcg ccgcgcgacg
     9301 ttgtcgcccg cgccatccat gcggagcggg aggcaggtcg cggcgcgagc tcggcatcgg
     9361 tgtgat
//
LOCUS       DATAJL010000809         2122 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85387,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000809 DATAJL010000000
VERSION     DATAJL010000809.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85387"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1058)
                     /gene="hisD"
                     /locus_tag="VHN39_15335"
     CDS             complement(<1..1058)
                     /gene="hisD"
                     /locus_tag="VHN39_15335"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEX2817765.1"
                     /translation="MRRFRFTDPDFERAFSAFIDERRETPEEVDAVVRDVIAAVRAEG
                     LIALLRFAQDFDGVALDEQSIRVSQAEIDDGAQACPPAVREAIAFAAERIRSYHARQR
                     PADLRFTDEAGVELGWRWTPIEAVGIYVPGGRAAYPSTVLMNAVPATVAGVERIAMVT
                     PPGRLQPAVLAAAKAAGVHEIWRVGGAQAVAALAYGAGPIRPVDKIVGPGNAFVTAAK
                     RRVYGAVGIDALAGPSEIVVVADGANRPDWIAADLLSQAEHDPAAQAILITDDEVFAA
                     KVEAAVIEQLSTLSTGEDAAASWREHGAVVIAPLDETPRLVDRIAPEHVEFALDNPER
                     LADRVRHAGAIFLGRHAP"
     gene            complement(1108..1554)
                     /locus_tag="VHN39_15340"
     CDS             complement(1108..1554)
                     /locus_tag="VHN39_15340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517807.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2948 family protein"
                     /protein_id="HEX2817766.1"
                     /translation="MAKLIEPKGRTGPLRLLAQDADDLAIISAAMQDAVAKVGDITYE
                     PKARLLTIAFNRYCWEAGGSERVRSALQLGGVMKVQARKIRRAPRDAVIEVLAVSFDA
                     GEAPGGMVTISCAGGGDLRAAVECVDAVLADVSEPWPTPRAPAHGE"
     gene            complement(1559..>2122)
                     /locus_tag="VHN39_15345"
     CDS             complement(1559..>2122)
                     /locus_tag="VHN39_15345"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269658.1"
                     /note="adds enolpyruvyl to UDP-N-acetylglucosamine as a
                     component of cell wall formation; gram-positive bacteria
                     have 2 copies of MurA which are active; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEX2817767.1"
                     /translation="GGAIANAGGEVRLTRTRSDFIQALIDKMIEAGAEITPHNDGLTV
                     RRNGALLKAVEFETGVYPGFPTDLQAPFMALMTLAEGESVIRETIFENRLMHAPELRR
                     MGADITVQGGEARVHGVDHLTGAQVMATDLRASVCLVIAGLAARGETMVNRVYHLDRG
                     FERLEEKLGACGAQIRRIKGDGEGDED"
BASE COUNT          306 a          786 c          708 g          322 t
ORIGIN      
        1 tcaggggcgt gacgaccgag gaagattgcg cccgcgtgac gcacgcggtc agccagccgc
       61 tccggattat ctagcgcgaa ctcgacgtgc tcgggggcga tacggtccac cagccgcggc
      121 gtctcgtcca gcggggcgat caccactgcg ccgtgttcgc gccaggacgc tgcggcgtcc
      181 tcgccggtgc tcagcgtcga gagctgctcg atgaccgccg cttcgacctt cgcggcgaac
      241 acctcatcgt cggtgatcaa tatggcctgg gcggcggggt catgctcggc ctgggaaagc
      301 aggtcggcgg cgatccaatc gggccggttg gcgccgtccg ccaccacaac gatctcggag
      361 gggcccgcca gggcgtcgat gccgacggcg ccatagactc ggcgctttgc cgccgtgacg
      421 aaggcgttgc cgggacccac gatcttgtcc accggccgga tcgggcccgc gccataggcc
      481 aacgccgcca cggcctgcgc tccgccgacc cgccagattt cgtgcacgcc cgcggccttg
      541 gccgccgcca gcaccgccgg ctgcagcctg cccggcgggg tgaccatggc gatccgctcg
      601 acgccggcca ccgtggccgg cacggcgttc atcagaacgg tggagggata cgccgcgcgg
      661 ccgccgggga catagatccc cacagcctca atcggcgtcc agcgccaacc cagctccacg
      721 ccggcctcgt cggtgaagcg caggtcggcg ggccgctggc gggcgtgata gctgcggatg
      781 cgctccgcgg cgaaggcgat ggcctcgcgg acagccggcg ggcaggcctg cgccccgtcg
      841 tcgatctcgg cctggctgac ccggatcgac tgttcgtcca gcgccacgcc atcgaagtcc
      901 tgcgcgaacc gcagcagggc gatcagccct tcggcccgca ccgcggcgat cacgtcgcgc
      961 accaccgcgt cgacctcctc gggggtctca cggcgctcat cgatgaaggc cgaaaaagcc
     1021 ctctcgaagt ctgggtctgt gaagcgaaag cggcgcatgg cgcggcctct ttagcggcgg
     1081 gcgggcgcga gcgccatgcc aggcggccta ttctccgtgg gccggagccc gcggcgttgg
     1141 ccagggctcg gagacatcgg ccagcacggc gtcgacgcac tcgaccgccg cgcgcaggtc
     1201 gccgccgccg gcgcagctta tggtcaccat gccgcccggc gcctcgcccg catcgaagct
     1261 caccgcaagc acctcgatta ccgcgtctcg cggcgcgcgc cggatcttgc gcgcctggac
     1321 cttcatcaca ccccccagct gcagggccga gcgcacccgc tcgctgccgc ccgcctccca
     1381 gcaatagcgg ttgaaggcga tggtcagcag ccgggccttg ggctcgtagg tgatgtcgcc
     1441 caccttcgcg acggcgtcct gcatggcggc cgaaatgatc gcgaggtcgt cggcgtcctg
     1501 ggccaacagg cgaagcggcc cggttctgcc cttaggctcg atcagcttgg ccatgggctc
     1561 agtcctcgtc gccctcgccg tcgcccttga tgcgccggat ctgggccccg caggcgccga
     1621 gcttctcctc cagccgctca aagccgcggt cgaggtggta gacgcggttg accatcgtct
     1681 cgccgcgcgc cgccaggccc gcgatcacca ggcagaccga cgcccgaagg tcggtggcca
     1741 tcacctgggc tccggtcagg tggtcgaccc catgcacgcg ggcttcgccg ccctggaccg
     1801 tgatgtcagc ccccatgcgc cgcaactccg gggcatgcat gaggcggttc tcgaagatgg
     1861 tctccctgat aacgctttcg ccctcggcga gcgtcatcag cgccatgaac ggcgcctgca
     1921 gatcggtggg gaagccggga tagacgccgg tctcgaattc cacagccttc aacagcgccc
     1981 cattgcgcct cacggtcagc ccgtcgttgt gaggcgtgat ctcggctccg gcctcgatca
     2041 tcttgtcgat taacgcctgg atgaaatcgc tgcgggtccg tgtcagccgc acctcgcccc
     2101 cggcgttggc tatagccccc cc
//
LOCUS       DATAJL010000810         1779 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98196,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000810 DATAJL010000000
VERSION     DATAJL010000810.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98196"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1397
                     /locus_tag="VHN39_15350"
     CDS             <1..1397
                     /locus_tag="VHN39_15350"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817768.1"
                     /translation="LTQEVANLNFNFDTGRFFNLQGGPVQVAFGFEYRREHTKETNDP
                     FVLAGNTENLASNSAGGYHVSEGYIELNLPILKDFAPLLHELSLDLADRGGNYSTVGG
                     VNSYKVEGRYLPVSWFTLRTTYSQATRAPNITEAFSPSQSTFFNIADPCSAENIQNNV
                     NFAKNCAAAGIPTGFVANTNASITGTTSGNPNLNAEQSFSYTGGFVLQPPIVPGLAIT
                     VDYYSIKIKDAITNVQAQDIINNCFGSAVGLDPTFCSLLKRGPDQNIDFVSTTFVNAS
                     KLFTDGYEMQITYATDVSPLTQMWRYTQALDGRLSFNLTADYVEHLRNFPFQNDPTNV
                     HILDGLVSSSPLSTVNPGTPNLKGLIDTTYSQGPLTLGWQVRYIGKGALFNRDPDQAD
                     HSEAFSPAFAPAKFYHNLTARYRLDGQLQGAEIFGGVNNVFGDLPPAYTIASGQDVGY
                     ELGRFLFIGFKYRR"
     gene            1497..>1779
                     /locus_tag="VHN39_15355"
     CDS             1497..>1779
                     /locus_tag="VHN39_15355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817769.1"
                     /translation="MSRRPHTLLIALALAAVAGAAPAQRASAPLRVGFYLPWDQASRA
                     SAVAHSGSLDVLAPMSGALDSAAGTVRWQPDPALPSALAAARGKPKVFPI"
BASE COUNT          306 a          675 c          511 g          287 t
ORIGIN      
        1 ccctcacgca ggaggtcgcc aacctgaact tcaacttcga caccggccgc ttcttcaacc
       61 tgcagggcgg cccggtccag gtggcgttcg gcttcgaata ccgccgcgaa cacaccaagg
      121 agaccaacga cccgttcgtg ctggccggca acaccgagaa cctcgccagc aactcggccg
      181 gcggctacca tgtctccgaa ggctacatcg agctgaacct tccgatcctg aaggacttcg
      241 cgcccctgct gcacgagctg tcgctggacc tggccgaccg gggcggcaac tactccacgg
      301 tgggcggcgt caactcctac aaggtggaag gccgctacct gccggtgagc tggttcaccc
      361 tgcgcacgac ctattcccaa gcgactcgcg cgccgaacat caccgaggcc ttctcgccgt
      421 cgcagtcgac gttcttcaac atcgccgacc cctgcagcgc ggagaacatc cagaacaacg
      481 tcaacttcgc caagaactgc gcggcggcgg gcattccgac cggtttcgtg gccaacacca
      541 acgcctcgat caccggcacc acctccggca atccgaacct taatgcggag cagtcgttca
      601 gctacacagg cggcttcgta ctgcagccgc cgatcgtgcc gggcctagcg atcacggtcg
      661 actactattc gatcaagatc aaagacgcga tcaccaacgt ccaggcccag gacatcatca
      721 acaactgctt cggctcggcc gtgggtcttg acccgacctt ctgcagtctc ttgaagcgcg
      781 gacccgacca gaacatcgat ttcgtcagca ccaccttcgt gaacgcctcg aagctgttca
      841 ccgacggcta cgaaatgcag atcacctacg cgaccgacgt ctcgccgctg acccagatgt
      901 ggcgctatac ccaggcgcta gacgggcggc tgtcgttcaa cctgaccgcc gactacgtcg
      961 agcacctgcg gaacttcccg ttccagaacg acccgaccaa cgtgcacatc ctcgatggcc
     1021 tggtgtcgtc ctcgccgctg tcgaccgtca accccggcac accgaacttg aaggggctga
     1081 tcgacaccac ctattctcag ggtccgctga ccctgggctg gcaggtgcgc tacatcggca
     1141 agggcgcgct gttcaaccgc gacccggatc aggccgacca ctctgaggcg ttctccccgg
     1201 ccttcgcgcc cgccaagttc taccacaacc tgaccgcccg ctaccggctg gacggccagc
     1261 tccagggcgc ggagatcttc ggcggcgtga acaacgtctt cggcgacctg ccgccggcct
     1321 ataccatcgc cagcggccag gacgtcggct acgagctcgg gcggttcctc ttcatcggct
     1381 tcaagtaccg ccgctagggc ggggccatcg gccccatcgg gcggagaagg gcggtcctcg
     1441 cgggggccgc cctttttcgt ttccgcgagg gccgccgagg ccctaggacg ggccgcatga
     1501 gccgacggcc gcacaccctg ctgatcgccc tcgccctcgc ggctgtggcc ggcgccgcgc
     1561 ccgcccagcg cgcttcggcg cccctgcggg tcggcttcta cctgccgtgg gaccaggcct
     1621 cccgcgcctc ggccgtcgcc cattcaggga gcctcgacgt gctcgccccc atgtccggcg
     1681 cgctggactc cgcggcgggc acggtccgct ggcagcccga cccggcgctg ccctcggccc
     1741 tcgccgccgc ccgcggcaag cccaaggtct ttcccatcg
//
LOCUS       DATAJL010000811         1814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98247,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000811 DATAJL010000000
VERSION     DATAJL010000811.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98247"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..395
                     /locus_tag="VHN39_15360"
     CDS             <1..395
                     /locus_tag="VHN39_15360"
                     /inference="COORDINATES: protein motif:HMM:NF015431.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX2817770.1"
                     /translation="VVSVPHVVIARNLPGLIDEGGERRAFVARASWEDAGAFEAALAS
                     RGLTRRVGVSAPDTYTALAVASRTDMATLIPRRLALLSAQGGRVKLIDPPYESPSVDV
                     SLLYLKERLAEPAIAWMHDLIRNVAASL"
     gene            404..787
                     /locus_tag="VHN39_15365"
     CDS             404..787
                     /locus_tag="VHN39_15365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817771.1"
                     /translation="MRLSLTALLVRDYAEAIDFFVGKLGFALTSDTDQGAGKRWVVVT
                     PPGGDAGLLLAKPTNSAQTARIGDQGAGRVIMFLETDDFERDHGRMLGAGVRFLEAPR
                     REPYGTVAVFADLYGNRWDLIEPKA"
     gene            complement(784..1407)
                     /locus_tag="VHN39_15370"
     CDS             complement(784..1407)
                     /locus_tag="VHN39_15370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2306 domain-containing protein"
                     /protein_id="HEX2817772.1"
                     /translation="MNGKVSTGAWALLALLSLGIAVGSYRYLLPGTPGIPPGIADNLM
                     RHPWLILHAGLAATALTLGPFQFVTRLRTALPRVHRWMGRVYVFACLIGGAAGLMLAW
                     GTSAGPIAQGGFGTLGVLWIVCAAQAWRLALARRFVEHRRWMVRSFALTFAAVTLRLY
                     LPFAAMTDHSFMEGYRAISWLCWVPNLLIAELYLNWARLRIPAPASA"
     gene            1520..>1814
                     /locus_tag="VHN39_15375"
     CDS             1520..>1814
                     /locus_tag="VHN39_15375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817773.1"
                     /translation="MSRPAPTRRPQAAVLVRRALAEFALLSAAGVFMALLGPFGSAQN
                     TLSERFIYWLVLIVGGGVIGIAIDEALGRRLGHFWRRLAADSLLMTPGVTLLVV"
BASE COUNT          278 a          661 c          607 g          268 t
ORIGIN      
        1 ccgtcgtctc ggtgccgcac gtggtcatcg cccgcaacct gccgggcctg atcgacgagg
       61 gcggcgagcg gcgcgccttc gtcgcccggg cgagttggga ggacgccggc gccttcgagg
      121 ccgcgctcgc ctcccgcggc ctgacccggc gggtcggcgt ctccgcgccc gacacctata
      181 cggcgctggc cgtggccagc cgcaccgaca tggccaccct gatcccgcgg cgcctggccc
      241 ttctctcggc ccagggaggg cgggtcaagc tgatcgatcc cccctatgag agcccgtcgg
      301 tcgatgtcag cctgctctat ctgaaagagc ggttggccga accggcgatc gcctggatgc
      361 acgacctgat ccgcaatgtc gccgcgagcc tttaggaggt ggtatgcgcc tttccctcac
      421 cgccctcctg gtccgcgact acgccgaggc gatcgacttc ttcgtcggca agctcggctt
      481 cgcgctgacc tccgacaccg accagggcgc aggcaagcgc tgggtcgtgg tgacgccgcc
      541 cggcggcgac gctgggctcc tgctcgccaa gccgaccaac tccgcccaga ccgcccggat
      601 cggcgaccag ggcgccggac gggtgataat gttcctggaa accgacgact tcgaacgcga
      661 tcacggccgg atgcttggcg ctggggttcg cttcctggag gcgccgcggc gcgaacctta
      721 cggaacggtg gcggtcttcg cggacctcta cggcaaccgc tgggacctga tcgagcccaa
      781 ggcctaggcg ctggcgggcg ccggtatccg caggcgcgcc cagttcagat agagctctgc
      841 gatgagcagg ttggggaccc agcagagcca cgaaatggcc cgatagcctt ccatgaacga
      901 atggtcggtc atcgccgcga acggcaggta gagccgcagc gtcaccgccg cgaacgtcag
      961 cgcgaaggag cgcaccatcc agcgccggtg ttccacgaac cgccgcgcca gcgccaggcg
     1021 ccaggcctgg gccgcgcaga cgatccacag gacgcccagc gtgccgaacc cgccctgcgc
     1081 gatcggacca gcgctcgtcc cccaggccag catcaggccc gccgcgccgc cgatcaggca
     1141 ggcgaagaca tagacccggc ccatccagcg gtggaccctc ggcaacgccg tgcgcagcct
     1201 ggtgacgaac tggaatggcc ccagcgtcag cgccgtggcg gccaggccgg cgtgcaggat
     1261 caaccaggga tggcgcatca ggttgtcggc gatgcccggt ggtatgcccg gcgttcccgg
     1321 cagcagatag cggtaggacc ccaccgcgat gccgaggctg agcagtgcta acagcgccca
     1381 cgcccccgtc gaaaccttgc cgttcatatg gaacttccct ccgcgacggg ctgaacttgc
     1441 aggcctcttc cggttgcgcc accgcagaac cgcgaacggc gccgtttctg cgcgaacgga
     1501 tcatggcaga gtgtccgcga tgtcccgccc cgccccgaca cgccgaccgc aagccgccgt
     1561 cctagtgcgg cgcgcgctcg ccgagttcgc tctgctgagc gccgcgggcg tgttcatggc
     1621 gctgctcgga cccttcggct cggcccagaa caccctgtca gagcggttca tctactggct
     1681 cgtcctcatc gtcggcggcg gggtgatcgg catagcgatc gacgaggcgc tcgggcgcag
     1741 gctgggccat ttctggcgcc gtctggccgc cgacagcctg ctgatgacgc ccggcgtcac
     1801 gctcctcgtc gtgg
//
LOCUS       DATAJL010000812         2621 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85478,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000812 DATAJL010000000
VERSION     DATAJL010000812.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85478"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..203
                     /locus_tag="VHN39_15380"
     CDS             <1..203
                     /locus_tag="VHN39_15380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817774.1"
                     /translation="GAVIFLAVMLLGPGRSGPFPWLIAGAAVAYIGAAVAGCAWLSGR
                     QTRRLERLEDLRRILFDDVAGG"
     gene            315..1283
                     /locus_tag="VHN39_15385"
     CDS             315..1283
                     /locus_tag="VHN39_15385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEX2817775.1"
                     /translation="MAKAARWAVVLMAGASLAACASLTTPKYDIHAAGAHAQQSIAPK
                     PGAKGTDQPYQVGGIWYVPQDQPRYDEKGIASWYGDAFNMKATADGETFDMSQFSAAH
                     TTLPLPSMVEVTNLDNGRKLTVRVNDRGPFVGGRIIDLSHAAAQELGYDRAGTAHVRV
                     RYVGPAPLAGPGAGVRYARASPAPQGPMSTRRPADEDIFEDAALAPTSAATPLVRAPE
                     AISVSTLAPLPGARSYPQDLPANAPAVTAQTYRIQAGAFSDQDNARRAAAQLASAGTA
                     TIEPMERGGTTLYRVILPGPADEAEAFAMRDKVAGIGFADARVLRP"
     gene            1315..1950
                     /gene="tmk"
                     /locus_tag="VHN39_15390"
     CDS             1315..1950
                     /gene="tmk"
                     /locus_tag="VHN39_15390"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEX2817776.1"
                     /translation="MQQGRFITFEGGEGAGKSTQLKRLSARLEAGGREVVATREPGGS
                     PGAEDIRALVLRGAADRWSPVTETLLMYAARRDHVERVIRPALARGAWVVCDRFADST
                     RAYQGAAGGTAPELIAALEVHILEGTRPDLTLIFDLPVVVGLERAHVRAGAEMRFESK
                     GQAFHERLREGFLAIARVEPGRCAIIDAAGSLDEVEARVWAAVDDRLAVHG"
     gene            1943..>2621
                     /locus_tag="VHN39_15395"
     CDS             1943..>2621
                     /locus_tag="VHN39_15395"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEX2817777.1"
                     /translation="MGEIHPPREVFDLTGHEAAEAAFEASRTRGRLHDAWLLTGPEGV
                     GKATFAYRAARRLLGAPEDLAHGILGSSPDHPVSRQIIAHAHPDLFVLERIGEDGKIR
                     KVIPVEETRRISEFFSKTPASAPHRVAIVDAADDLNPFGANAILKTLEEPPAHGVLLI
                     VSHAPGRLLPTIRSRCRRLAMQPLGHDAVVQLLGDYAPDIGQDEKVALANLAEGSIGR
                     ALELASSG"
BASE COUNT          390 a          917 c          942 g          372 t
ORIGIN      
        1 tgggggcggt gatcttcctg gccgtcatgc tgctgggccc cggccgaagc ggaccgttcc
       61 cgtggcttat cgcgggcgcc gcagtggcgt atatcggcgc ggcggtcgcg ggctgcgcct
      121 ggctctcggg gcgccagacg cggcgcctgg aaaggctcga ggacctgcgg cgcatcctgt
      181 tcgacgacgt cgcgggcggg taaggcgaca agatccgatt aaccctgacg aaagcatcgg
      241 cccggcattc tctcccgcgc gaagcaatgg aatggggatt cgccatgtat cgcaggacct
      301 gggatcgtgg acggatggcc aaggcagccc gatgggccgt cgtgctgatg gcgggggcct
      361 cgctcgccgc ctgcgccagc ctgaccacgc ccaagtacga catccacgcc gccggcgccc
      421 atgcgcaaca gagcatcgcc ccgaagcccg gcgccaaggg gactgaccag ccctatcagg
      481 tcggtggcat ctggtacgtg ccgcaggacc agccgcgcta tgacgagaag ggcatcgcct
      541 cctggtacgg cgacgccttc aatatgaagg ccaccgccga tggcgagacc ttcgacatga
      601 gccagttttc ggcggcccac acgacccttc cgttgccgtc gatggtcgag gtcaccaacc
      661 tcgacaacgg ccgcaagctc accgtgcggg tgaacgaccg cgggcccttt gtcggcggcc
      721 ggatcatcga cctgagccac gccgcggccc aggagctcgg ctacgaccgg gccgggaccg
      781 cccatgtgcg ggtgcgctat gtgggcccgg cgcccctggc cggtccgggg gccggcgtgc
      841 gctatgccag ggcctcgccc gcgccacagg ggccgatgtc cacgcgcagg ccggctgacg
      901 aggatatctt cgaggacgcc gccctggcgc cgacctccgc ggcgacgccg ctggtgcgcg
      961 cgcccgaggc gatctcggtc tcgaccctgg cccctctgcc gggcgcccgt tcctacccgc
     1021 aggacctgcc cgcgaacgcg ccggccgtca cggcgcaaac ctatcggata caggccggcg
     1081 ccttcagcga ccaggacaat gcccgccgcg ccgcggccca gctggcgagc gccggcacag
     1141 ccacgatcga gcccatggaa cggggcggca cgacgcttta tcgcgtaatc ctgccgggcc
     1201 cggcggacga ggctgaagcc ttcgccatgc gggacaaggt ggccgggatc ggctttgccg
     1261 acgccagggt cctccgcccc tagactttag tcacgaaccg gccaatttga gccggtgcaa
     1321 cagggtcggt tcatcacctt cgaaggcggc gagggggcgg ggaaatccac ccagctcaag
     1381 cgtctgtccg cgcgcctgga ggccggcggc cgcgaggtgg tggcgacccg tgagccggga
     1441 ggctcgccgg gcgccgagga catccgcgcc ctggtgttgc gaggcgccgc cgaccgctgg
     1501 agcccggtca ccgagacgct cctgatgtac gcggcccggc gcgaccacgt ggagcgggtg
     1561 atccgtccgg cgctggcgcg cggcgcctgg gtggtctgcg accgcttcgc cgattccaca
     1621 cgggcctatc agggcgcggc cggcggcacg gcgccggagc tgatcgcggc gctggaggtc
     1681 cacatcctgg agggcacgcg gccggacctg acactgatct tcgacctgcc ggtcgtggtg
     1741 ggcctcgagc gggcgcatgt gcgggccggc gcggagatgc gctttgagtc caagggacag
     1801 gccttccacg agcggctgcg cgaggggttc ctggccatcg ccagagtgga gccggggcgc
     1861 tgcgcgatca tcgacgccgc gggctcgctg gacgaggtcg aggcccgggt ctgggcggcg
     1921 gtggacgacc ggctggcggt ccatgggtga aattcatccc ccgcgggagg tcttcgacct
     1981 caccggccac gaggcggcgg aggcggcctt cgaggcgagc cgcacgcgcg gccggctgca
     2041 cgacgcctgg ctgctgaccg ggccggaggg tgtcggcaag gcgaccttcg cctatcgcgc
     2101 ggcgcggcgg ctcctgggtg cgccggaaga ccttgcgcat gggattctgg gttccagtcc
     2161 ggatcacccg gtcagccgcc agatcatcgc ccacgcccac cccgacctct tcgtgctcga
     2221 acggatcggc gaggacggca agatcaggaa ggtgatcccc gtcgaggaga cacggcggat
     2281 ctccgagttt ttttccaaaa cgcccgccag cgcgccgcac cgggtggcca tcgtcgacgc
     2341 cgccgacgat ctcaacccgt tcggcgccaa cgccattttg aagacccttg aggaaccgcc
     2401 ggcccacggg gtgctgctga tcgtcagcca cgcgcccggc cggctgttgc cgaccatccg
     2461 ctcgcgctgc cgccggctgg cgatgcagcc tctcggccac gacgcggtcg tgcagctgct
     2521 gggcgactat gcgccggata tcggacagga cgagaaggtg gccctcgcga acctcgcgga
     2581 aggcagcatc ggccgcgcgc ttgaattggc cagttcggga a
//
LOCUS       DATAJL010000813         2548 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85536,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000813 DATAJL010000000
VERSION     DATAJL010000813.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85536"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..869
                     /locus_tag="VHN39_15400"
     CDS             222..869
                     /locus_tag="VHN39_15400"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEX2817778.1"
                     /translation="MSRPWMGYLAGAAFALSAAGAAAAYAQTTPAPKAAPAPGAQVEE
                     RTVILRRGDDADERSAMLHEGRERHVMIMRNDGAGHAEHLRTMLQLKPGQEAALTAYL
                     AATGPQHHERIVEMSDHAAPKTTPQRLSEMENRMAEDTARSHARIEATRKFYDQLEPS
                     QKKVFDEMPMLMGPMGSHMEEMKVMVNMEGMPPMPPLPPLPPRPPRAPVPPTPHS"
     gene            1081..1809
                     /gene="ccmC"
                     /locus_tag="VHN39_15405"
     CDS             1081..1809
                     /gene="ccmC"
                     /locus_tag="VHN39_15405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease CcmC"
                     /protein_id="HEX2817779.1"
                     /translation="MIPAPAFLSNPERFMAFSRWAAPMFGAIAVVLGLAGLWLGWTAP
                     VDYQQGATVRILFIHIPTAWMSEFVYACLAGASLLSLVWRQLLADAAAQAAAPLGAGF
                     TLLTLATGSLWGRPEWGTWWVWDARLTSELVLFLIYLAYIALRASMDDETKAARAAAI
                     LALVGAVNLPIIHYSVDWWNTLHQGASVFRAGGSALAPVFYLPAILMALAYTSAFGSL
                     WLVRIRGEVWRRRAEAAALRAARA"
     gene            1827..1973
                     /gene="ccmD"
                     /locus_tag="VHN39_15410"
     CDS             1827..1973
                     /gene="ccmD"
                     /locus_tag="VHN39_15410"
                     /EC_number="7.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF016856.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HEX2817780.1"
                     /translation="MLNLETGKYAFYIWTAYGLTAAVYAIMIVGSLAHSRRWKARAEA
                     LTRK"
     gene            1970..2491
                     /locus_tag="VHN39_15415"
     CDS             1970..2491
                     /locus_tag="VHN39_15415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018060972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HEX2817781.1"
                     /translation="MSRWIAALPLVVLAALALLFAGYALHHDPKVIPMALVGKPLPDV
                     TLPRLDNGAMTRITDATREGPVLVNFFASWCAPCQIEHPALMAMRAHHVRIIGIAYKD
                     APANTQAFLSKLGDPFMQTLVDRDGRAGIEFGVSGVPETYLISQQGKVLAKYTNLNEG
                     DAQALTARLLTGR"
BASE COUNT          389 a          901 c          841 g          417 t
ORIGIN      
        1 gcggactgcc ctggaccgcc ggcttcgtcc tgctctgcgc ctatgccgcc gccttcgtgg
       61 ccctggggcc gctgttcatg gccgcggcct gccgcaacgc gctgtcctga cggcggagcg
      121 cccctcgccc aagattacca aagcttcatt tcatatggcg ccgtttcgcc aacattgagc
      181 ctaaccttca agctcgacca tttggatcag gagatttgac gatgtcgcgg ccatggatgg
      241 gctatctcgc aggcgcggcg ttcgcccttt cagccgccgg agccgcggcc gcctacgcgc
      301 agaccacgcc ggcgcccaag gccgcgcccg cgcccggggc ccaggtcgag gagcgcacgg
      361 tgatcctgcg ccgcggcgat gacgccgacg agcgcagcgc catgcttcat gagggcaggg
      421 agcgccacgt gatgatcatg cgcaacgacg gcgccggcca cgccgagcat ctgcgcacca
      481 tgctgcagct gaagcccggc caggaggccg cgctcaccgc ctatctcgcc gccacggggc
      541 cgcagcatca tgagcgcatc gtcgagatga gcgaccacgc cgcgcccaag accacgccgc
      601 agcggctgag cgagatggaa aaccggatgg ccgaggacac cgcccgaagc cacgcccgca
      661 tcgaggcgac gcggaagttc tacgaccagc tcgaaccctc ccagaagaag gtgttcgacg
      721 agatgcccat gctgatgggt cccatgggct cgcacatgga ggagatgaag gtgatggtga
      781 acatggaggg gatgcctccc atgccgccgc tgccgccgct ccccccgagg ccgccgcgcg
      841 cgcccgtacc gcctacgcct cactcctaag gccggcaggc gcgcttgccg ggaccctgtg
      901 cgcgggctaa tcccggcgag tgtggcggat ctgaagttcc ctcacagttt gtccaagcgc
      961 cgtagggaac ttcagatcgg caagccacac tcgaaacgaa ggcttgctag tgtccttgtc
     1021 gcttccgagg ttcgaacggg gttgcagctg cgctgtcgaa cttcggaaac gggacactag
     1081 atgatcccgg cgcccgcttt tctctccaat cccgagcggt tcatggcctt ctcgcgatgg
     1141 gccgcgccga tgttcggggc catcgcggtg gtcctgggcc tggcgggcct gtggctcggc
     1201 tggaccgcgc cggtggacta ccagcagggc gccaccgtgc ggatcctgtt catccacatc
     1261 ccgaccgcct ggatgagcga gttcgtctac gcctgcctgg cgggcgcgag cctgctctcg
     1321 ctggtctggc gtcagttgct ggccgacgcc gccgcccagg ccgctgcccc gctgggcgcg
     1381 ggcttcaccc tgctaacgct cgccacaggg tcgctctggg gccggccgga gtggggaacc
     1441 tggtgggtgt gggacgcgcg gctgacctca gagctggtgc tcttcctgat ctacctggcc
     1501 tatatcgcgc ttagggcctc gatggacgac gagaccaagg ccgcccgcgc cgcggccatc
     1561 ctggcgctgg tgggggcggt gaacctgccg atcatccact acagcgtcga ctggtggaac
     1621 acgctccacc agggcgcctc ggtgttccgg gccggcggct cggcgctggc gccggtgttc
     1681 tacttgccgg cgatcctgat ggcgctggcc tatacgtcgg ccttcgggtc gctgtggctg
     1741 gtgcgcatcc gcggcgaggt ctggcgccgc cgcgccgagg ccgcggcgct tcgcgcggcc
     1801 cgtgcttaag gtgatggggg cttaagatgc tgaacctcga gaccggcaag tacgccttct
     1861 acatctggac cgcctacggc ctgaccgccg cggtatatgc gatcatgatc gtgggctcgc
     1921 tggcccattc ccggcgctgg aaggcgcgcg ccgaagccct cacacgcaaa tgagccggtg
     1981 gatcgccgcc ctgccgctgg tggtcctggc ggcgctggcc ctgctgttcg cgggctatgc
     2041 cctgcaccac gacccgaagg tcatccccat ggccctggtc ggcaagcctt tgccggacgt
     2101 caccctgccc cgcctcgaca acggcgccat gacgcggatc acggacgcca cccgcgaggg
     2161 gccggtgctg gtcaactttt tcgcctcctg gtgcgcgccc tgccagatcg agcacccggc
     2221 gctgatggcc atgcgcgccc accacgtccg gatcatcggc atcgcctaca aggacgcgcc
     2281 ggccaacacc caggcgttcc tgtcgaagct gggcgacccc ttcatgcaga ccctggtgga
     2341 ccgcgacggc cgggccggca tcgagttcgg ggtttccggc gtgccggaga cctacctgat
     2401 ctcgcagcag ggcaaggtgc tcgccaaata taccaacctc aacgagggcg acgcccaggc
     2461 gctgaccgcg cggctgttaa ccgggcgttg atcgccaggg ccgcagattg agccagcgtt
     2521 aaccataagc cgaccctcaa ggcccccg
//
LOCUS       DATAJL010000814         1892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71884,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000814 DATAJL010000000
VERSION     DATAJL010000814.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71884"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            550..1638
                     /locus_tag="VHN39_15420"
     CDS             550..1638
                     /locus_tag="VHN39_15420"
                     /inference="COORDINATES: protein motif:HMM:NF027980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol-specific phospholipase
                     C1-like protein"
                     /protein_id="HEX2817782.1"
                     /translation="MAAAGATLAADSGADIRINQIQVIGSHNSYHAGLTPGVAKLLQA
                     TNPKAFDGLDYQHAPLTVQFDHGIRQVELDVYVDAKGGRFAHPFGATLNAGGAAAFDK
                     EGVFLKPGFKVMHVQDIDYISNCQPFIGCLKEIRAWSKAHPQHVPIFVLVETKTQDPI
                     KAVPGMVDYERFTAPALDALDAEVRSVFSDKEMVTPDQVRGHFATLPEAVAHGGWPTL
                     KSARGKVVFLLDQQNVTATYVAGHPALQGRALFTNARAGTPDAAFVEQNEGSPEVIAD
                     LVKQGYLVRTRSDADTKEGRTGDTTQRDKALRSGAQIVSTDYPWYEPSRWVGYSVSLP
                     GHISVRCNPVNAPKGCSDARLVDATVAP"
     gene            1729..1892
                     /locus_tag="VHN39_15425"
                     /pseudo
     CDS             1729..1892
                     /locus_tag="VHN39_15425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640180.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase"
BASE COUNT          334 a          626 c          650 g          282 t
ORIGIN      
        1 gcctccagca tggcggtgag gccgatgccc gaggcggaaa ggcggccctc ctcggcgagc
       61 gccgccagca gcaggcccat caggcccgtg atcaggagcg cgagcaggcc gagcgcgata
      121 gcggcggcgg cctcggtggg cttgaacgga ggccccgcga cctcgtccac gaggtcgtcg
      181 gcggcacggc cgggcggcga cccgagagca gcggttgaga gggaaggagg ctgagggttc
      241 atggggtccg atgccgcgcg gatagggccg gtggaggatc gccccgagtc tagcccgaca
      301 ctccaataag catcagcaga aaggtggccg caagggtcgc aaacgccatc ggcgtgctgg
      361 gcgtcaaacg cctgtggccg tccgctggag ttcgccaggg gtcgtctgaa tgggcggcgt
      421 ctgttgaagc ccctcgcttg ctggtttcgc ctgccgggat tccggttcaa actgacctgg
      481 cgccagcgcg ctgttacggg agatcagatg cctcggtcca gttgtctact tgccgcagcg
      541 acctgcgcga tggcggccgc tggcgccacc ctagcggccg actccggcgc cgacatccgc
      601 atcaaccaga tccaggtgat cggcagccac aacagctatc acgccggcct gacgccgggg
      661 gttgccaagc tgttgcaagc gaccaacccc aaggccttcg acgggctgga ctatcaacac
      721 gcacctctga ccgtgcagtt cgaccatggg attcgccagg tggagctcga cgtctacgtc
      781 gacgccaagg gcgggcgctt cgcgcacccc tttggcgcga cgctgaacgc cggcggggcg
      841 gcggccttcg acaaggaagg ggttttcctg aagcccggct tcaaagtcat gcacgtgcag
      901 gacatcgact acatttcgaa ctgccagccg ttcatcggct gcctgaagga aatccgcgcc
      961 tggtcgaagg cacaccccca gcacgtgccg atcttcgtcc tggtggagac caagacccag
     1021 gatccgatca aggccgtgcc cgggatggtg gactacgaac gcttcacggc gccggcgctg
     1081 gacgctctgg atgcggaagt ccgttcggta ttctccgaca aggaaatggt cacgccagac
     1141 caggtgcgcg gccacttcgc gaccctgccc gaggccgtgg cgcacggcgg ctggccgacg
     1201 ttgaagagcg cgcggggcaa ggtggtcttc ctgctggatc agcagaacgt cacggcgacc
     1261 tatgtggcgg gccacccggc gctgcagggc cgcgccctgt tcaccaacgc cagggccgga
     1321 acccccgacg ccgcgttcgt ggagcagaac gaaggctctc ccgaagtcat cgccgatctg
     1381 gtgaaacagg gctatctggt gcgcacccgc tccgacgccg acacgaaaga gggacgcacg
     1441 ggcgacacga cccagcgaga caaggcgctc cgtagcggcg cgcagatcgt aagcaccgac
     1501 tatccctggt acgagccgtc gcgctgggtg ggctattcgg tgagcttgcc tggccacatc
     1561 tcggtgcgct gcaatccggt gaacgcgccg aaaggatgct cggacgcgcg ccttgtggac
     1621 gcgaccgtcg caccctaggg gcggccgaaa atcaccacgg acttcccggc aggctgcggg
     1681 cgcctggggg ctgagggcta gccagcctcg atccccgcct gccgtttcgc ggcggtgatc
     1741 gacgtgggca tcaaccgtgt gcccttcgac gacccggtga aagccgccga gggccgcacc
     1801 aaggtcgtcg gcgacgtcca cttcaaggaa gcgagccaga tcgccggctg gatcacaccg
     1861 gtccccggcg gcgtcggctt gatgaccgtc gc
//
LOCUS       DATAJL010000815         6223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85539,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000815 DATAJL010000000
VERSION     DATAJL010000815.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6223
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85539"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..303
                     /locus_tag="VHN39_15430"
     CDS             <1..303
                     /locus_tag="VHN39_15430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817783.1"
                     /translation="SAQAERAAAGGEGAAALNSRADGDWLETIAGLDAPAKALLTRAA
                     EAGGLTARGWTRTVRLARTIADLEGSDAVRRVHVAEALIYRRVAPGSAVGSSLVAS"
     gene            complement(249..710)
                     /locus_tag="VHN39_15435"
     CDS             complement(249..710)
                     /locus_tag="VHN39_15435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817784.1"
                     /translation="MFRTNGIPTFVYPLTLLAICILAIWRGGRHERIATFGLLGGWIV
                     TVAAYRVPNLPTEYIVLAADLSLLALLIWVAMKSPAWWPIFAAGFHLLAILTHVAKDL
                     DRQLGTWAYISAQIIWGYLLAITIGVGSWRHPVFQLATSDDPTADPGATRR"
     gene            complement(785..1192)
                     /locus_tag="VHN39_15440"
     CDS             complement(785..1192)
                     /locus_tag="VHN39_15440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817785.1"
                     /translation="MSQPDARRREVMLKQRRMVAEQIAEALFEAEAAIDTALAKTAAL
                     TGIMPSLRKEAGVSALIGQDAVERASQAIMALADARRAIVETHKELSIAQTQIGLGAV
                     MVGDPTMPKPPPMFASDEQPQVGRRALRAVRAA"
     gene            complement(1353..1691)
                     /locus_tag="VHN39_15445"
     CDS             complement(1353..1691)
                     /locus_tag="VHN39_15445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817786.1"
                     /translation="MGDWQNFDNRAVIGRALRLRREIDDFEARWPTPAAREEALPTFT
                     WAQLERQLVDLAATPAQASMARHLVSGTRKLAAFKPSEMVLREILCMTWVLLDENFKG
                     EAEAGSTEMI"
     gene            2105..2494
                     /locus_tag="VHN39_15450"
     CDS             2105..2494
                     /locus_tag="VHN39_15450"
                     /inference="COORDINATES: protein motif:HMM:NF024252.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2817787.1"
                     /translation="MDTKDPGRTAQLELIIGARMRTRRRQLGLSQSDLADRLGVSFQQ
                     VQKYERGANRVAASTLLAAAQALGTTISWMVGEEASGRDDDEDVFRALARPGALEILQ
                     AFNAIPDISARAALLALAREMATGDPA"
     gene            2604..4157
                     /locus_tag="VHN39_15455"
     CDS             2604..4157
                     /locus_tag="VHN39_15455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2817788.1"
                     /translation="MRRPARPLAERRPRRAQISAEQLASLSHEFRTPLNGVLGMSRLL
                     ENTRLTAEQRAYAAAIRDSGEHLLTLVNDVLDFAKLGAGRIELHITEVEVGGLLRGVC
                     ELLSPRAREKGVEIAWAAPAELGAICADDGRLRQILLNFAGNAVKFTETGGVLVSVTQ
                     MKGGEPERGRLRFTVDDTGPGVTPAQRERIFEAFAQADPAHAHLGGAGLGLAIARRLA
                     LAMDGEVGVEPRAEGGARFWFEADFRQVAESAPAPTLSARKVGIASPNAIVREAASQQ
                     IAACGGQAVAAADLEALLAATQFGDVVLVDHALTTGGRLVRRPPQRRAIILLAPEDRA
                     LIGRYRRSGFAGYLIKPLRRASLAERVLVAAGAEQAPAAGDEDERIATAAAPGKRVLL
                     VEDNPINALLARALLTREGCEIDHAISGEEAIAAAKVGAYDLILMDMRMPGLTGVETA
                     RELRDLGVETPIVALTANAFEDDRHACLAAGMNDFLVKPMSPDALRVMLTRWTGSGWT
                     ETVRRAKVG"
     gene            4206..5552
                     /locus_tag="VHN39_15460"
     CDS             4206..5552
                     /locus_tag="VHN39_15460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017505023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817789.1"
                     /translation="MTTDPSSAPRRKRTAMEVLRELRQPKVAVTLALGFSSGLPFLLT
                     ANTLGYWLRDEGTSLKAIGFISWVGLAYTLKWLWSPVVDRVDLPLLGRLGRRRGWMAF
                     AQILVAAGLVGIAVVGPKGPGGLTVIGAFALMTAFASATQDIAIDAWRIEAASDTDEQ
                     GLLSSAAALGYRAAIIAADALILAVAARIGWPGAYVTYGAAMGIGLVATWFALEPARA
                     EAALKAQAPLWNPRGFFDAVVGPFVDFFAQHKALGFLMLIAIASYRLPDFVMGPMYTP
                     YYVDLGLTKDAVAAVRGSVGLFGALAGVAIGGLSAVRLGLFPTLIAGALLQGLGTASF
                     ALLALNPGNLGIFSAVMGGDNFVQGYAGVALIAYMSSLTSLGYTATQYALLSSAYALL
                     GKFLKGFSGAIVEGLAKTHGQMGAYEIAFVGAGLIALPAMVLFLMLARLKARAPAP"
     gene            complement(5549..>6223)
                     /locus_tag="VHN39_15465"
     CDS             complement(5549..>6223)
                     /locus_tag="VHN39_15465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEX2817790.1"
                     /translation="PFDPAVVVEVADQTQAGAGTAFSIAQSGVWVTARHVVEGCSRAA
                     IVVAPGRGVAAGVRIDPNSETAILTTEGGAQPLPLGFGQRLRRGERAFHVGFPQGKPG
                     EASSRLLGRENLVVQGRGARTEPVLVWAETGRTDGLKGTLGGLSGAPALDDQGRVVGV
                     TIAEAPRRGRIYTTAPETTARMLAAGGRRPAELPGPTISAENYGRVADDLRRNLRVAQ
                     VVCLTT"
BASE COUNT          924 a         2177 c         2141 g          981 t
ORIGIN      
        1 tcggcccagg ccgagcgcgc ggcggcaggc ggcgaaggcg cggcggcgct caactcacgc
       61 gccgacggag attggctgga gactatcgcg ggcctcgacg ccccggccaa ggcgctgctg
      121 acccgcgccg cggaggccgg cggcctcacc gcgcgcggct ggacccgcac ggtgcgcctg
      181 gcccgcacca tcgccgacct ggaaggctcc gacgccgtgc gccgcgtcca cgtggccgaa
      241 gctctgatct atcgccgcgt ggcgcctggg tcggcggtgg ggtcgtcgct ggtggcgagc
      301 tgaaagactg ggtggcgcca ggagccgacg ccgatcgtga tggccagaag ataaccccag
      361 atgatctgcg cgctgatgta ggcccatgtc cctaactggc gatccaagtc cttggcgacg
      421 tgggtcaaga tggccaggag atggaagccc gcggcgaaaa tcggccacca ggcggggctc
      481 ttcatcgcca cccagatcaa caacgcgagc aggctcagat cggcggccag tacgatgtat
      541 tcggtcggaa ggtttggaac ccgataggcc gcgacagtca ctatccagcc gcccaggagg
      601 ccgaaggtcg cgatacgctc atgtcgaccg ccgcgccaaa tcgcgagaat gcagatcgcc
      661 aacagcgtca gcgggtagac gaaagtcggt attccattcg ttcggaacaa agataagggc
      721 ccccggggtc gccggaggcc caatctgtca gagccgcgga cggctggata ccgtgctgtt
      781 cagctcaggc ggcacgcacg gcgcggagcg cccgacgtcc gacctgaggc tgctcgtcgc
      841 tggcgaacat cggcggcggc ttgggcatgg tcggatcgcc gaccatcacg gcgccgaggc
      901 cgatttgggt ttgagcgatc gagagttcct tgtgagtctc gacaatcgcg cgtcgggcgt
      961 cggccagcgc catgatggcc tgacttgcgc gctcgacggc gtcctggccg ataagcgctg
     1021 aaactccagc ctctttacgg agcgacggca tgatgccggt gagggcggcg gtcttggcga
     1081 gcgcggtgtc gatcgcggcc tcggcttcga acagggcctc ggcgatttgt tcggcgacca
     1141 tacggcgttg cttgagcatg acttctctcc tgcgcgcgtc gggctgcgac acacgccgtg
     1201 atgatttacg ggggtatggt ttctgtccgg ttaggcccgg aaaatatttc gcccaagatc
     1261 ctggagcgcg tggagccctg ccagcatcgc cccgaacgcc agggcggtga tgatcgcaac
     1321 ccccacgatc gcgcccagac gggcgagcgg gcttagatca tttcggtaga gccggcctcg
     1381 gcttcgccct tgaaattctc gtccaagaga acccaggtca tgcagaggat ttcccgcaag
     1441 accatttccg agggcttgaa cgccgccagc ttgcgcgtac ccgacaccaa gtgccgcgcc
     1501 atactggctt gcgccggggt cgccgccaga tcgacgagct gccgttccag ttgcgcccag
     1561 gtaaaggtcg gaagggcttc ctcccgggcc gccggcgtcg gccagcgcgc ctcgaagtcg
     1621 tcgatctccc gacgaagccg cagggccctg ccgatcaccg ctcgattgtc gaagttctgc
     1681 cagtcgccca tgggcctgtt cctctgttgc caccccatgg ggccagaggt taacggcggc
     1741 gtctgtcctg atcgcgtcct gtcctgattc agtcaggaca tggttaacgt cgagctggcg
     1801 ggcgaggcgc gccgcggcgt agcggtcctc gacgccgagc ttacgccgcg cgcggtcgca
     1861 gtaggtgtcc accgaagtct tggacatgcc aagttcgcgg gcgatctgct tcgacgacag
     1921 atgctgatcc accaggcgca ggcattcgcg ttcgcgcggt gtgagcagcc ccaccgaatc
     1981 ctcggcaatg atgatgcgtg cgaccatagc gagagcagtt aacgacgact tggcgctcgc
     2041 gtctacttta acgcgaaggc ctgcctgtga tcagctacac tgtgccacat aaggaggcgc
     2101 gccgatggac acgaaggacc cgggccgcac cgcgcaactg gagctgatca tcggcgccag
     2161 aatgcgcaca cgccgccgcc aactcggcct gtcgcagtcc gatctcgccg atcgcctggg
     2221 ggtgtctttc cagcaggttc agaaatatga gcgcggcgcc aaccgggtcg ccgcctccac
     2281 actcctggcc gccgctcagg ccctggggac caccatctcc tggatggtgg gcgaggaggc
     2341 ctccggccgc gacgacgacg aggacgtgtt ccgcgcgctc gcccgcccgg gcgcgctgga
     2401 aatcctgcag gcgttcaacg ccattcccga catcagcgcg cgcgcggccc tgctggcgct
     2461 cgcgcgcgag atggcgacgg gcgaccccgc ctgagttagc gtcctcgctg cttccgaagt
     2521 tcgctcggcg cctgggcctg aatgtggcga acctcagatc cagcacacta gccgttaagg
     2581 cgtttggcgc tatcggaggc gccatgcgga gacctgcaag acctctcgcc gagcgcagac
     2641 cccggcgcgc gcagatcagc gcggagcagc tggcgtccct cagtcacgag ttccgcactc
     2701 ccttgaacgg cgtgctcggg atgtcgcgtc tgttggagaa cacgcggctg accgccgagc
     2761 agcgcgccta cgccgccgcc atccgggatt caggagagca tctgctgacg ctggtcaacg
     2821 acgtgctgga tttcgccaag ctgggcgccg gcaggatcga gctgcatatc accgaagtgg
     2881 aggtcggcgg cttgctgcgc ggcgtctgcg agctgttgtc gccgcgggcg cgggaaaagg
     2941 gtgtcgagat cgcctgggcc gcgccggcgg agctgggcgc catctgcgcc gatgacgggc
     3001 gcctgcgcca gatcctgctc aacttcgccg gcaacgccgt gaagttcacc gagaccggcg
     3061 gggtgctggt cagcgtcacc cagatgaagg gcggggagcc ggagcgcgga cgcctgcgct
     3121 tcaccgtcga cgacaccggc cctggcgtca cgccggccca gcgcgaacgg atcttcgaag
     3181 ccttcgccca ggccgacccg gcccacgccc atctgggcgg cgcggggcta ggcctggcca
     3241 tcgcgcggcg cctggcgctg gccatggacg gcgaagtggg tgtcgagccc cgggccgaag
     3301 gcggcgcgcg cttctggttc gaggccgatt tccggcaggt cgccgagagc gctccggccc
     3361 ccaccctctc cgcgcgcaag gtcggcatag cctcccccaa cgcgatcgtc cgtgaagccg
     3421 cctcgcaaca gatcgcggcc tgtggcggcc aggcggtcgc cgccgccgac ctcgaggccc
     3481 tgctggcggc gacccaattc ggcgatgtgg tgctggtgga ccatgcactg accaccggcg
     3541 gccggctggt gcgccgcccg cctcagcggc gcgccatcat cctgctggcg ccggaggacc
     3601 gcgcgctgat cggccgttac cgccgctcgg gcttcgcagg ttacctcatc aagccgctcc
     3661 gccgcgcctc gctggccgag cgggtgctgg tggccgccgg cgccgaacag gcccccgcgg
     3721 ccggcgacga ggacgagcgg atcgccaccg cggccgcacc cggcaagcgg gtgctcctgg
     3781 tggaggacaa tccgatcaac gcgctcctcg cccgcgctct gctcacccgc gagggctgcg
     3841 agatcgacca cgcgatcagc ggcgaggagg ccatcgccgc cgcgaaggtc ggcgcctacg
     3901 acctgatcct gatggacatg cgcatgccgg gcctgaccgg cgtcgagacg gcccgcgaac
     3961 tgcgtgatct tggcgtcgag accccgatcg tggcgctgac cgccaacgcc ttcgaggatg
     4021 accggcacgc ctgcctggcc gccggcatga acgacttcct ggtcaagccc atgtcgccgg
     4081 atgcgctgag ggtcatgctc acccgctgga ccgggtctgg ctggacggaa accgtgcggc
     4141 gcgccaaggt cggctgaccg ggccccctcg cgacctaatg gggcgccccc ttcagcaggg
     4201 cgcccatgac caccgaccca agctccgccc ctcgccgcaa gcgcaccgcc atggaagtgc
     4261 tccgggagct gcggcagccg aaggtcgcgg tgaccctggc gctgggcttc tcgtcgggcc
     4321 tgcccttcct gctgaccgcc aacaccctgg gctactggtt gcgggacgag ggcacgagcc
     4381 tgaaggccat cggcttcatc tcctgggtcg ggctcgccta tacgttgaag tggctctggt
     4441 ccccggtcgt ggaccgcgtg gacctgccgc tgctgggccg gctgggacgg cggcgcggct
     4501 ggatggcttt cgcccagatc ctggtcgccg cgggtctggt ggggatcgcc gtcgtgggac
     4561 ccaagggtcc gggcggactg accgtcatcg gcgctttcgc actcatgaca gccttcgcct
     4621 cggccaccca ggatatcgcc atcgacgcct ggcgcattga ggcggcctcc gacaccgatg
     4681 agcagggcct gctctcgtcc gccgctgctc tcggctaccg cgccgcgatc atcgccgccg
     4741 acgccctgat cctggcggtc gccgccagga tcggctggcc cggcgcctat gtgacctatg
     4801 gcgcggccat gggcatcggc ctcgtggcca catggttcgc tctggagccc gcccgcgccg
     4861 aggccgcgtt gaaggcccag gcgccgctct ggaacccccg cggtttcttc gacgccgtcg
     4921 tcgggccgtt cgtggatttc ttcgcccagc acaaggccct gggcttcctg atgctgatcg
     4981 ccatcgccag ctaccgcctg ccggacttcg tcatggggcc gatgtacacg ccctactatg
     5041 tcgacctggg cctgacgaag gacgctgtcg cggcggtcag gggttccgtc ggcctcttcg
     5101 gagccctggc cggcgtggcg atcgggggcc tgagcgcggt gcggctgggc ctcttcccga
     5161 cactgatcgc cggcgcgctc ctgcaagggc tgggcaccgc gtccttcgcc ctcctggcgc
     5221 tcaaccctgg taacctcggg attttcagcg cggtgatggg cggcgacaac ttcgtgcagg
     5281 gttacgccgg ggtcgcgctg atcgcctata tgtcgagcct cacgagcctg ggctacacgg
     5341 ccacccaata cgcgcttctg tcctcggcct acgccctcct gggcaagttc ctgaagggct
     5401 tttccggggc gatcgtcgag gggctggcca agacccatgg ccagatgggc gcatacgaga
     5461 tcgctttcgt cggggcaggc ctgatcgcgc ttcccgcgat ggtgttgttc ctgatgctcg
     5521 cccgcctgaa agcccgcgca cccgcgccct aggtcgtcag gcagaccacc tgggcgaccc
     5581 gcaggttgcg gcgcaggtcg tcggcgacgc ggccataatt ctcagcgctg atcgtgggtc
     5641 cgggcaattc cgccggccgc cggccgccgg cggcgagcat gcgcgcggtg gtctccggag
     5701 ccgtggtgta gatccgcccg cgccggggcg cctcggcgat ggtgacgccc acgacccggc
     5761 cctggtcgtc cagcgccggg gcgccggaaa gcccgccaag cgtccccttc aacccatcgg
     5821 tgcggccggt ctcggcccag accagcaccg gctcggtgcg ggcgcccctg ccctgcacca
     5881 ccagattctc gcggcccagc aggcgcgaac tggcctcgcc aggcttgcct tgcgggaacc
     5941 ccacgtggaa cgcccgctcg ccgcggcgca ggcgctggcc gaagcccagc ggcaggggct
     6001 gagcgccgcc ctcggtggtc aggatcgcgg tctcggagtt ggggtcgatc ctgacgcccg
     6061 ccgcgacgcc gcggcccggc gccaccacga tggcggcccg cgagcagccc tcgaccacgt
     6121 ggcgcgcggt cacccagacg ccggactggg cgatggagaa ggcggtgccg gcgccggcct
     6181 gggtctggtc ggcgacctcg accactacgg cgggatcgaa ggg
//
LOCUS       DATAJL010000816         5956 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_109567,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000816 DATAJL010000000
VERSION     DATAJL010000816.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5956)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5956)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5956
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109567"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..594
                     /locus_tag="VHN39_15470"
     CDS             <1..594
                     /locus_tag="VHN39_15470"
                     /inference="COORDINATES: protein motif:HMM:NF014385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2817791.1"
                     /translation="QAEANLHAASAAIGVAEANRLPSFLLTGDAGSSALTFARVFHSG
                     TGFWDLGAAVTTPIFQGGALLHQERAAKAAYQQSAEQYRSTVLTAVQNVADTLAAIEQ
                     DAEGLKATAAAADAAKTTLDLSERQYRSGYASYLSLLSAEQGDQQARIALVQAQAARF
                     SDTVALYQALGGGWWRRPELAGADLAKAETAKDAHAN"
     gene            584..1738
                     /locus_tag="VHN39_15475"
     CDS             584..1738
                     /locus_tag="VHN39_15475"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2817792.1"
                     /translation="MQTRSPLRALAASMLAATALAALSGCGAKPDAAAEADATPQNVT
                     LTAAQLQHIQLVTVARADFHKTIEAAGVVDFDNDQSTSVTSPISGLVTRLLVSPGQQV
                     SAGQALAMVDSSDFAAATSAYAKAFATARTTRQLADTDKDLAQHNGVSAREAQQAETD
                     AVNAAADRDAALQALQALKLDPKAIKDIQAGRPISHIEGAIRAPIAGTVVEKLITPGQ
                     LLQAGTTPAFTVANLSKVWVMAQISGSDLAAVSVGDPADIETGVGSASLTGAVDNVAA
                     LVNPDTRAVSARVVVANPGGLLKKQMYVRVHLHSRQGASGLLAPASSILRDDENLPFV
                     FVAQANGGFARRRVTLGYRTGDQYEIPTGLQAGERVVGDGGVFVQFMQSQ"
     gene            1735..4863
                     /locus_tag="VHN39_15480"
     CDS             1735..4863
                     /locus_tag="VHN39_15480"
                     /inference="COORDINATES: protein motif:HMM:TIGR00914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0051139 - metal cation:proton antiporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CusA/CzcA family heavy metal efflux RND
                     transporter"
                     /protein_id="HEX2817793.1"
                     /translation="MSDTAPHVAPPAPRAPSVMNRVVTAGLRQPWLVALMTLILIGVG
                     VWSLQRLPVDAYPDLSPPMVELITQWPGHTSEEVERLITVPAEIEMNGLPGATVSRSI
                     SLYGLSQLVITYKDGTDRNAARQEVFNRLGDLSLPDGVKPAVSPLTSPSGLIYRYVLQ
                     SSDRSPMELKTFEDWVVEPALKSVPGVADDSGFGGGEMQYQVLFDPNKLAGVGLTVSQ
                     VETALAANNTNAGGGFYSQGGQFYYVRGVGRLETLEDIGNVVLAVHAGVPVLVKDVGR
                     AAIGIAPRLGEFGFETQDDAVEGVILLRTGEKTQDVLRGVEAKVRDLNQHVLPKDVKV
                     TPFYDRIDLIKFTTGVVEGNLLRGMILVVVMLIFFLYDLRAGLIVAVTIPLSLLFAFT
                     CLNIQKASANLLSIGAIDFGILVDGAIFMVENIFRQIALRKGTPATIHEIIRDAAAEV
                     DRPLVYAVAVIVVSFLPIYVLSGPSGALFRPMADTMIFGLIGALLVTLLLLPVLCAWL
                     MRNNVRERTNRPFEWLKDRYAKGLDFCLEHRWGTLWVAAGILAATLAITPLVGAEFMP
                     QLDEGALWVRATMPYTISFDESAKVAPKVRAILKTFPQVTTVSSELGRPDDGTDPTGF
                     FNVEFFVGLKPYAQWTGPYRDKAQLIAAINKKLEAFPGITFNYTQPAQDAVDEAETGL
                     KSALAVKVFGPDLKTLETRGKAIKQVLQHVRGIKDVTLVQELGQPSLTVKIDRAKIAR
                     YGVNVADINALVQTAIGGDVATQVVQREKQFDLVVRLEEQYRDTPEKIGAILVATPGG
                     QQIPLKEFADISVTSGAAFIYREDNSRYIGVQFSVEGRSLAAAVEDAMHQVDQKVALP
                     RGYRADWGGDYTEYTASRDQLKLILPLTLFLIFLLLFTLYSNFKFPFITIAGVVLTAP
                     IGGILALWLTGTPFSVSSGIGFLALFGVSVQTAVVYISYVNELRRDGVPAAEAIRDGA
                     ILRLRPIMMTALVAAVGLLPAALATGVGTDSQRPFALVIVAGLFTRLLISVFLMPVLY
                     ALVARPDDRLEV"
     gene            complement(4990..>5956)
                     /locus_tag="VHN39_15485"
     CDS             complement(4990..>5956)
                     /locus_tag="VHN39_15485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2817794.1"
                     /translation="GIAAEKLGQVFERFTQADSSTTRRFGGSGLGLTISKRLVELMGG
                     RIWVESEVGNGSLFAFAVPFEIAATVNRPTAAPVGAGPEPALPALRILLAEDSPDNCT
                     ITMAYLEDTPYQVEIAGTGAIACEMFEAGLYDLVLMDRQMPIMDGLTATRTIRAWEEA
                     NGRSLTPIIALTASALKGDRETCLAAGCTAFLTKPIKQEVLLQAIKDRIIVAPPSSKE
                     DSPPKDTVPLRANQKIANRIPAYLQSCRQNVIAILDALDRVDFATVSLLGHNMRGSGG
                     AYGFQAITDIGAALEQAAESADTDASRKWVGELSSYLDRVELISD"
BASE COUNT          950 a         2112 c         1916 g          978 t
ORIGIN      
        1 caggctgagg ccaatctgca cgccgccagc gccgccatcg gggtcgccga ggccaaccgc
       61 ctgccgagct tcctgctcac cggcgacgcg ggatcgtccg ccctgacctt cgcgcgggta
      121 ttccactcgg gcacgggctt ctgggacctg ggcgcggcgg tgacgacgcc gatcttccag
      181 ggcggcgccc tcttacacca ggaacgcgcc gccaaggccg cctaccagca gtcggcggag
      241 caatatcgct cgacggtgct caccgccgtc cagaacgtcg ccgacacgct cgcggccatc
      301 gaacaggacg ccgagggcct gaaggccacg gccgccgccg ctgacgcggc gaagaccacc
      361 ctcgacctgt cggagcggca gtaccgctcg ggctacgcca gctacctgtc gctgctcagc
      421 gccgagcagg gcgaccagca ggcccgcatc gcgctggtcc aggcccaggc cgcccgcttc
      481 tccgacaccg tcgccctcta ccaggcgctg ggcgggggct ggtggcggcg tcctgaactc
      541 gcgggggccg acctcgccaa ggccgagacc gccaaggacg cccatgcaaa ctagatcgcc
      601 cctccgcgcc ctggcggcct ccatgctcgc ggcgacggcg ctggccgccc tcagcggatg
      661 cggcgccaag cccgacgcgg cggccgaggc tgacgccacg ccgcagaacg tcaccctgac
      721 cgccgcgcag ctgcagcata tccagctggt gacggtggcg cgggctgact tccacaagac
      781 catcgaggcc gccggcgtcg tggacttcga caacgaccag tccaccagcg tgacctcacc
      841 gatctcaggt ctggtgacgc gcctgctggt ctcgcccggt cagcaggtga gcgccggtca
      901 ggccctggcc atggtcgatt cctccgactt cgccgcggcc accagcgcct acgccaaggc
      961 cttcgccacc gcgcgcacga cgcgtcagct cgccgacacc gacaaggacc tggcgcagca
     1021 caacggcgtc tcggcccgcg aggcccagca ggccgaaacc gacgcggtca acgccgccgc
     1081 cgaccgcgac gccgcgctcc aggcgctgca ggcgctgaag ctcgatccca aggcgatcaa
     1141 ggacatccag gccggccggc cgatcagtca tatcgagggc gccattcgcg cgcccatcgc
     1201 cggcacggtg gtcgaaaagc tgatcacccc cggacagctt ctgcaggccg gaaccacgcc
     1261 ggccttcacc gtcgccaatc tgtcgaaggt ctgggtgatg gcccagatct ccggttcgga
     1321 cctggccgcg gtgagcgtcg gcgatccggc ggacatcgag accggcgtcg ggtccgccag
     1381 cctgaccggg gcggtggaca acgtcgcggc cctggtgaac ccggacaccc gcgcggtgtc
     1441 cgctcgcgtg gtcgtcgcca atcccggcgg cctcctgaag aaacagatgt acgtgcgggt
     1501 ccacctccac tcgcggcagg gcgccagcgg cctgctggcg ccggcatcgt cgatccttcg
     1561 cgacgatgag aacctgccct ttgtctttgt cgcccaggcg aacggcggct ttgcccgccg
     1621 gcgcgtgacc ctcggctacc gcaccggcga ccagtacgag attccgaccg gcctgcaggc
     1681 cggtgaacgc gtggtcggcg acggcggcgt cttcgtgcag ttcatgcaga gtcagtgagc
     1741 gacaccgcgc ctcatgttgc gccgccggcg ccgcgcgcgc cctcggtgat gaaccgggtg
     1801 gtgacggcgg gcctgcgcca gccgtggctg gtggcgctga tgaccctgat cctgatcggg
     1861 gtcggcgtct ggtcgctgca gcggctgccg gtggacgcct atccagacct ctcgccgccg
     1921 atggtggagc tgatcaccca gtggccgggc cacacgtccg aggaagtcga gcggctgatc
     1981 accgtgccgg ccgagatcga gatgaacggc ctgcccggcg cgaccgtgtc gcggtcgatc
     2041 tcgctctacg gcctttcgca gctggtgatc acctacaagg acggaaccga ccgcaacgcc
     2101 gcgcgccagg aggtgttcaa ccgcctcggc gacctcagcc tgcccgacgg cgtcaagccg
     2161 gccgtctcgc ccctgacctc gccgtcgggg ctgatctacc gctacgttct gcagagctcc
     2221 gaccgctctc ccatggagct gaagaccttc gaggactggg tggtggaacc ggcgctgaag
     2281 tccgtgcccg gggtcgccga cgactcgggc ttcggcggcg gcgagatgca gtaccaggtg
     2341 ctgttcgacc cgaacaaact ggcgggcgtc ggcctcaccg tcagccaggt ggagaccgcg
     2401 ctcgccgcca acaacaccaa cgccggcggt ggcttctatt cgcaaggcgg gcagttctac
     2461 tacgtccgcg gcgtcggccg gcttgagacc ctggaggaca tcggaaacgt ggtcctggcc
     2521 gtccacgccg gcgtgccggt gctggtcaag gatgtcggcc gcgcggcgat cggcatcgcg
     2581 cctcgcctgg gcgaattcgg cttcgagacc caggacgacg ccgtcgaggg cgtgatcctg
     2641 ctgcgcaccg gcgagaagac ccaggacgtc ctgagggggg tcgaggccaa ggtccgcgac
     2701 ctcaaccagc acgtcctgcc caaggacgtg aaggtcacgc cgttctacga ccgcatcgac
     2761 ctgatcaaat tcaccaccgg cgtggtggag ggcaatctgc tgcgcggcat gatcctggtg
     2821 gtcgtgatgc tgatcttctt cctttacgat ctccgcgccg ggctgatcgt ggcggtaacg
     2881 atccctctct cgctgctctt cgccttcacc tgtctcaaca tccagaaggc gtcggccaac
     2941 ctgctctcca tcggggcgat cgacttcggc atcctggtcg atggcgccat cttcatggtc
     3001 gagaacatct tccgccagat cgcgctgcgc aaaggcacgc ccgcgaccat ccatgaaatc
     3061 atccgcgacg ccgcggccga ggtggaccgg ccgctggtct atgcggtggc ggtgatcgtg
     3121 gtcagcttcc tgccgatcta tgtcctctcc ggtccgtccg gcgccctgtt ccggcctatg
     3181 gccgacacca tgatcttcgg cttgatcggg gcgcttctgg tgacgctgct gctgctgccg
     3241 gtgctctgcg cctggctgat gcgcaacaac gtgcgcgagc ggaccaaccg gcctttcgag
     3301 tggctgaagg accgttacgc caagggcctc gacttctgcc tcgaacatcg ctgggggacg
     3361 ctctgggtgg cggcgggcat cctggccgcg acgctggcga tcacgccgct ggtgggcgcc
     3421 gagttcatgc cgcagctcga cgagggcgcc ctgtgggtcc gggccaccat gccctacacc
     3481 atctccttcg atgagagcgc caaggtggcg cccaaggtcc gcgcgatcct gaagaccttc
     3541 ccgcaggtga ccacggtctc ctcggagctc ggccggcccg acgacggcac cgatcccacc
     3601 ggcttcttca acgtcgagtt cttcgtgggc ctgaagccct acgcgcagtg gacggggccc
     3661 taccgcgaca aggcccagct gatcgcggcc atcaacaaga agctggaggc cttcccgggc
     3721 atcaccttca actacaccca gccggcccag gacgcggtgg acgaggccga gaccggcctt
     3781 aagagcgcgc tggcggtgaa ggtcttcggc ccggatctca agacgctgga gaccaggggc
     3841 aaggcgatca aacaggtgct gcagcatgtg cgcggcatca aggacgtgac gctcgttcag
     3901 gagctcggcc aacccagcct caccgtcaag atcgaccgcg ccaagatcgc gcgctacggc
     3961 gtcaatgtcg ccgacatcaa cgccctggtg cagaccgcca tcggcggcga cgtcgccacc
     4021 caggtggtgc agcgggaaaa acagttcgac ctggtggtgc gcctcgagga acagtatcgc
     4081 gacacccccg agaagatcgg cgccatcctg gtcgccacgc cgggcggcca gcagatcccg
     4141 ctgaaggaat tcgccgacat cagcgtcacc agcggcgcgg ccttcatcta ccgcgaggac
     4201 aactcccgct acatcggcgt tcagttttcc gtcgagggcc gcagcctggc ggccgcggtg
     4261 gaagacgcca tgcaccaggt cgatcagaag gtcgccctgc cgcgcggcta tcgcgccgac
     4321 tggggcggcg actacaccga gtacaccgcc tcccgcgacc agctgaagct gatcctgccg
     4381 ctgacgctgt tcttgatctt cctgctgctg ttcacgctct acagcaactt caagttcccg
     4441 ttcatcacca tcgccggcgt cgtgctcacg gcgccgatcg gcggcatcct ggcgctctgg
     4501 ctcaccggca cgcctttctc cgtctcctcc ggcatcgggt tcctcgccct gttcggcgtc
     4561 tcggtgcaga cggcggtcgt ctacatctcc tacgtcaacg agctgcgccg cgacggcgtc
     4621 cccgccgccg aggccatccg agacggcgcc atcctgcgcc tgcggcccat catgatgacc
     4681 gccctcgtgg cggcggtggg cctgctcccg gccgcgctgg cgaccggggt gggcacggat
     4741 tcccagaggc ccttcgcgct cgtcatcgtg gccggcctct tcacccggct gctgatcagc
     4801 gtcttcctga tgcccgtgct ctacgccctt gtcgcccggc cggacgatcg gctggaggtc
     4861 tgactttccc ggtgaacggg gcggtggccg acgacgagcc cggcgtcccg atgagcttcg
     4921 gggagcggac cgaggaccca ggcgccgacg tggcctcgct cggctgcgat ctcgacgccc
     4981 tgtgacaggc tagtcagaga tgagctcgac gcgatccaga tagctggaca attcgcccac
     5041 ccacttgcgt gatgcgtcgg tgtcggcgct ctcggccgcc tgctcaaggg cggcgccgat
     5101 gtcagtgata gcttgaaatc cataggcacc cccagagccc ctcatgttgt gcccgagaag
     5161 gctcacggtc gcaaagtcga cccgatccaa ggcgtccagt atcgcgatga cattttgcct
     5221 gcagctctgc agatatgcag gaatccggtt tgcgattttt tgattcgcgc ggagggggac
     5281 cgtgtccttc ggggggctgt cttccttcga tgatggcggc gcgacgatga tacggtcctt
     5341 gatcgcttgc agcagcacct cttgcttgat gggcttcgtc aggaacgccg tgcaccccgc
     5401 ggccaggcag gtttctcgat cacccttcaa cgctgaggcc gtcagcgcga tgattggtgt
     5461 gagcgagcga ccattcgctt cttcccacgc ccggatggtc cgcgtcgcgg tcaagccatc
     5521 catgatcggc atttgccggt ccatcaggac caggtcatag aggccagctt caaacatttc
     5581 acaggcgatg gccccggtgc ccgcgatttc gacctggtac ggcgtgtcct ccagataggc
     5641 catggtgatc gtgcagttgt cgggagagtc ctccgccaga agaatacgca gcgccggcag
     5701 cgccggctcg gggcctgcgc cgaccggcgc ggccgtcggc cggttgacgg tcgctgcgat
     5761 ctcgaaaggt acggcgaaag caaacaagct accgttcccg acctcacttt cgacccagat
     5821 gcgaccgccc atcagctcca ccaggcgctt cgaaatcgtc agccccagcc ccgagccccc
     5881 aaacctgcgc gtggtggatg agtcggcttg ggtgaagcgt tcaaacacct ggcccagttt
     5941 ctcagctgca atgccg
//
LOCUS       DATAJL010000817         2109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98387,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000817 DATAJL010000000
VERSION     DATAJL010000817.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98387"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..868)
                     /locus_tag="VHN39_15490"
     CDS             complement(<1..868)
                     /locus_tag="VHN39_15490"
                     /inference="COORDINATES: protein motif:HMM:NF014301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PA domain-containing protein"
                     /protein_id="HEX2817795.1"
                     /translation="MKRRTGLTALLSACAIAAVSSAWAASPPPPMDSKALEAKFDAQI
                     NPAEMGTWLKLLAAEPNHVGSVHDKTNAEWIAAQLKSWGWDARIETFDVLYPTPISVN
                     LELVGGPGAPFKAMLTEPPIPGDQPTYTKDALPAYVAFQGDGDVTAPLVYVNYGMPED
                     YLALERMGISVKGKIVITRYGGGWRGLKPLLAQMHGAAGAIIYSDPKDDGYATDDVYP
                     KGAARPPHGFQRGSVADMPIYPGDPLTPGVGSTKDAKRLDRKDAITILKIPCLPISYA
                     DAQVLLASLDGPV"
     gene            989..>2109
                     /gene="glmU"
                     /locus_tag="VHN39_15495"
     CDS             989..>2109
                     /gene="glmU"
                     /locus_tag="VHN39_15495"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEX2817796.1"
                     /translation="MTARAAVILAAGQGTRMKSSLPKVLHKVGGRTLLDRVIDTVEAT
                     GCEQIVVVVGSGPSAVRDLVVGRLGEGAVAVQDPPQGTGHAVMAARDALTDFQGDVLV
                     TNGDCPLLTPADLEPIFSLRGDGVDLALLGFEPVDGLLYGRMVAGADGGVSRIVEPKE
                     ATSAELAIKACYAGMLCAEKGRLFGWLDRTTNQNAKGEYYLTEIVQLAAADKALTKAA
                     IAQERAVMGCDTPMQLAQAEAIFQQRRRADFLAQGVAMLAPDTVHVSWDTKIAAGVTV
                     EQFVVFAPGMTVETGALIRAFSHLEGAVVRSGAIIGPYARLRPGADIGEDAHIGNFVE
                     VKKVTVGKGAKANHLSYLGDGSIGAGANIGAGTIFCNYDG"
BASE COUNT          334 a          695 c          750 g          330 t
ORIGIN      
        1 ccaccgggcc gtccagcgag gccagcagca cctgcgcatc ggcatatgag atcggcagac
       61 aggggatctt caggatggtg atggcgtcct tgcggtcgag tcgctttgcg tccttggtcg
      121 agcccacgcc cggggtcagc gggtcgcccg gatagatcgg catgtcggcc accgagccgc
      181 gctggaagcc gtggggcgga cgcgccgcgc ccttcggata gacgtcgtcg gtggcgtagc
      241 cgtcgtcctt gggatcggaa tagatgatcg cgcccgcagc gccgtgcatc tgggccagca
      301 ggggcttcag gccgcgccag ccgccgccgt agcgggtgat gacgatcttg cccttcaccg
      361 agatgcccat gcgctccagc gccaggtagt cctcgggcat gccgtagttg acgtagacca
      421 gcggcgcggt gacgtcgccg tcgccctgga acgccacata ggccggcagc gcgtccttgg
      481 tgtaggtcgg ttggtcgccg gggataggcg gctcggtgag catggccttg aacggggcgc
      541 cggggccgcc gaccagctcc aggttcacgc tgatcggagt aggatagagc acgtcgaagg
      601 tctcgattct ggcgtcccag ccccaggact tcagctgggc ggcgatccat tcggcgttgg
      661 tcttgtcgtg gaccgacccc acatggttgg gctcggcggc cagcagcttc agccaggtcc
      721 ccatctccgc cggattgatc tgggcgtcga acttggcctc cagggccttg gagtccatcg
      781 gcgggggagg cgacgcagcc caggcgctcg aaacggctgc gatggcgcag gcggacagaa
      841 gggcggtaag accggtacga cgtttcatga actactcccc gacgaaggcc gggaagctag
      901 ctgtttctcg cccccggcgc caaggcttgg taagcacgcc ccaagatcca agactcggat
      961 tgctgactcg gccccaggaa tgcccacgat gacagcccgc gccgccgtaa ttctcgccgc
     1021 cggccagggc acgcggatga agtcgtccct gcccaaggtg ctgcacaagg tgggcgggcg
     1081 aaccctgctg gatcgggtga tcgacacggt tgaggccacc ggctgcgagc aaatcgtcgt
     1141 ggtggtgggt tcggggccgt cggcggtgcg cgacctggtg gtcggccgcc tcggcgaagg
     1201 cgctgtggcc gtgcaggatc cgccccaggg caccggccat gcggtgatgg ccgcgcggga
     1261 cgccctgacg gacttccagg gcgacgtgct ggtcaccaac ggcgactgcc cgctgctcac
     1321 gcccgccgac ctcgagccga tcttcagcct gcgtggcgac ggcgtggacc tggcgctgct
     1381 ggggttcgag ccggtcgatg gcctgctcta tggccggatg gtcgccggcg ccgacggcgg
     1441 cgtcagccgc atcgtcgagc cgaaggaggc cacctcggcc gaactcgcca tcaaggcctg
     1501 ctacgccggc atgctctgcg ctgaaaaagg gcggctgttc ggctggctcg accggaccac
     1561 caaccagaac gccaagggcg aatactacct gaccgagatc gtgcagttgg ccgccgccga
     1621 caaggcgctg accaaggccg ccatcgcgca ggagcgcgcg gtgatgggtt gcgacacccc
     1681 catgcagctc gcccaggccg aggcgatctt ccagcagcgc cgccgcgcgg acttcctggc
     1741 gcagggtgtg gccatgctgg cgcccgacac ggtccatgtc tcatgggaca ccaagatcgc
     1801 ggccggcgtc acggtcgagc aattcgtggt cttcgcgccc ggcatgaccg tcgagaccgg
     1861 cgcgctgatc cgggccttca gccacctgga gggcgcggtg gtgcgctcag gcgcgattat
     1921 cggcccctac gcccgccttc gtccgggcgc ggacatcggc gaggacgccc acatcggcaa
     1981 cttcgtcgag gtgaagaagg tcaccgtggg caagggcgcc aaggccaacc acctgagcta
     2041 ccttggcgat ggctcgatcg gggcgggtgc gaacatcggg gccgggacga tcttctgcaa
     2101 ctacgacgg
//
LOCUS       DATAJL010000818         5149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_71961,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000818 DATAJL010000000
VERSION     DATAJL010000818.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5149
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_71961"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..721
                     /locus_tag="VHN39_15500"
     CDS             <1..721
                     /locus_tag="VHN39_15500"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEX2817797.1"
                     /translation="ADPARKMMSAGQEAWLARELGVSVKSGRPWQVIGNEVVMARLFT
                     PPLHRYMTAEAYAAAKADLPRAAANRVAKIEANAALGLPWGADMWDGYPADRQRFYGI
                     VEKSHANAIVVSGDSHAFWANELFDAETGGKRVAVEFGTAGITSPGPGESIAAFPLGD
                     AFAKYNREVLFNNQTAHGFLLLTLTHAQATAELIAVSSIKDKAFTTKPIATYHVTPGP
                     GGVSALKQALAAVQRQAQPKA"
     gene            complement(683..1309)
                     /locus_tag="VHN39_15505"
     CDS             complement(683..1309)
                     /locus_tag="VHN39_15505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEX2817798.1"
                     /translation="MTVFQALAAYLVAAGLLTLTPGLDTALILRTAAVEGPRRAGLAA
                     VGIITGCLVWGAAVALGLGALLAASKLAFTVLRWAGAAYLVWLGLNLILKPRSGFDLA
                     AGAPSAEGDFAWMRRGLLTNLLNPKVGVFYISFLPQFLPAGVAPAPFIFLLAAIHAAL
                     GLAWSACLIGATRPIAGALKKASVVRWLDRLTGGVFLGFGLRLALDRR"
     gene            complement(1306..1701)
                     /gene="hisI"
                     /locus_tag="VHN39_15510"
     CDS             complement(1306..1701)
                     /gene="hisI"
                     /locus_tag="VHN39_15510"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEX2817799.1"
                     /translation="MTATFPTAADSHALEHGATLSPSFDANGLVAAVATHADTGEVLM
                     FAWMNAEALARTLDTGEAHYFSRSRNELWRKGATSGQIQSVVEARIDCDQDCVWLKVR
                     PQGDGGACHTGARSCFYRVIVDGKLVERP"
     gene            1891..2163
                     /locus_tag="VHN39_15515"
     CDS             1891..2163
                     /locus_tag="VHN39_15515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817800.1"
                     /translation="MVTISASALRTASRRRILGLAAGALAFSGVSAAALAAVQAKSSQ
                     KAVEYQTHPKGGHGCNSCKVFQPPTACKTVESPVQASGWCDKYARN"
     gene            complement(2246..2692)
                     /locus_tag="VHN39_15520"
     CDS             complement(2246..2692)
                     /locus_tag="VHN39_15520"
                     /inference="COORDINATES: protein motif:HMM:NF024966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2817801.1"
                     /translation="MDPIERLLAERECERLIYSYCHLVDHGQAGKVADLFTDDGVWAS
                     PEVTRDGREKIAKAFQARQDNTERMSRHVCSTPLIEVQDADTATGATYLQLYRHDGKP
                     GRRFSPLEGLPEFVGEYHDIFARTRDGWRFKSRTFVGAFAQMKASG"
     gene            complement(2782..3426)
                     /gene="folE"
                     /locus_tag="VHN39_15525"
     CDS             complement(2782..3426)
                     /gene="folE"
                     /locus_tag="VHN39_15525"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEX2817802.1"
                     /translation="MDAIRDRTLVGPNSANMADLDLEAAKRPSREEAMAAVRTLIAWA
                     GDDPRREGVLDTPKRVVDAYAEWFEGYTADPAKELSRTFEDVQGYDDIVMLREIEVES
                     HCEHHMAPFLGKAYVAYMPTNRVVGISKIARVVEIFAKRLQTQETMTQQIADAITDSL
                     RPAGVAVMIDANHQCMSTRGVHHRHVSTITTQFTGVFKTDPTLRQRFLDFANKK"
     gene            3626..5035
                     /gene="cysS"
                     /locus_tag="VHN39_15530"
     CDS             3626..5035
                     /gene="cysS"
                     /locus_tag="VHN39_15530"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEX2817803.1"
                     /translation="MSLTLYDTMARKKRPFIPADPRRVTMYVCGPTVYNYSHIGNFRP
                     VVVFDVLFRVLRRLYGEGSVLYAANVTDVDDKINAKAAEEGVPIGVITDRYLAAYNGD
                     AAALGALAPTAQPRATQTMDAIIAMIGRLVDNTSAYAAEGHVLFDTQAYGDYGKLSGR
                     PLDEMIAGARVEVAPYKQHPADFVLWKPSKPGEPEWESPWGPGRPGWHIECTAMIEQE
                     LGLPIDIHGGGIDLVFPHHENELAQGMCAGPNGKGGHAGYANYWLHNGFLNMADEKMS
                     KSLGNVALAHDLLKSQPGEVIRWALLAAHYRQPLAWTDDALAQARNSLDHLYGVLGRA
                     RHIDAGGSAALVDEQLAPLMDDLNTPSAMYQLKKLATDLDAAVRRAAPAAPAIKQDLL
                     ALAQVMGFLQADPQAWFQGGADAGLKVEIDALIAARDAARVAKDWGEADRIRAELTAL
                     NIEVMDGPAGATWRMKEQA"
BASE COUNT          841 a         1752 c         1784 g          772 t
ORIGIN      
        1 ggccgaccct gcgcgcaaga tgatgtcagc gggccaggag gcttggctgg cgcgcgagct
       61 gggggtctcg gtcaagtccg gccgtccctg gcaggtgatc ggcaacgagg tggtgatggc
      121 ccgcctcttc accccgccgc tgcaccgcta catgaccgcc gaggcctatg ccgccgccaa
      181 ggccgatctg ccgcgcgccg ccgccaatcg cgtcgcgaaa atcgaggcca atgcggcgct
      241 gggcctgccc tggggcgcgg acatgtggga cggctacccc gctgaccgcc agcggttcta
      301 tggcatcgtc gaaaagtccc acgccaacgc catcgtggtc agcggcgaca gccacgcctt
      361 ctgggccaac gagctcttcg acgccgagac cggcggcaag cgggtggccg tggagttcgg
      421 gacggcgggg atcaccagcc cgggaccggg cgaaagcatc gcggcctttc ctctggggga
      481 cgccttcgcc aagtacaatc gcgaggtgct gttcaacaat cagacggccc acggcttcct
      541 gctactgacc ctcacccacg cccaggccac cgccgagctg atcgcggtct ccagcatcaa
      601 ggacaaggcg ttcacgacga agcccatcgc cacctatcac gtgacgccag ggcccggtgg
      661 cgtgtcggcg ctgaagcagg ccctagcggc ggtccagcgc caggcgcagc ccaaagccta
      721 ggaagacgcc gccggtcagc cggtcgagcc agcggacgac actggccttc ttcagcgcgc
      781 cggcgatcgg ccgggtggcg ccgatcaggc aggccgacca ggccaggccc agcgccgcgt
      841 ggatcgccgc caggaggaag atgaacggcg cgggcgccac gccggccggc agaaactgcg
      901 gcaggaacga gatgtagaag acgcccacct tggggttcaa gaggttggtc aacaggcccc
      961 gccgcatcca ggcgaagtcg ccttccgccg agggcgcgcc ggcggccagg tcgaaaccgg
     1021 accggggctt gaggatcagg ttcaggccca gccagaccag gtaggccgcg cccgcccacc
     1081 tcagcaccgt gaaggcgagc ttcgaggcgg cgagcagggc gcccaggccc agcgccacgg
     1141 ccgcgcccca gaccaggcag ccggtgataa tccctaccgc ggccagtccc gcgcgcctgg
     1201 gtccctcgac agcggcggtg cgcaggatca gcgcggtgtc gaggccgggc gtcagcgtca
     1261 gcagccccgc ggccaccaga taggcggcca gcgcctggaa gaccgtcacg gccgctccac
     1321 cagcttgccg tcgacgatga cgcgatagaa gcaggatcgc gcgccggtgt ggcaggcgcc
     1381 gccgtcgccc tggggccgga ccttcagcca gacacagtcc tgatcgcagt cgatgcgggc
     1441 ctcgacgacg ctctggatct ggccgctggt cgcgcccttg cgccagagct cattgcggga
     1501 ccggctgaag tagtgcgcct cgccggtgtc gagcgtgcgc gccagcgcct cggcgttcat
     1561 ccaggcgaac atcagcacct cgccagtgtc ggcatgggtc gccaccgcgg cgaccaggcc
     1621 gttggcgtcg aagctggggc tgagtgtcgc gccatgttcg agggcgtgac tgtcagcggc
     1681 cgtggggaag gtcgcggtca tgggccccat atggcgccgt gggccggcgt cgcgctagcc
     1741 tccggttatc gggcggcttt cgacccgagt tgcgcctgga tgccctgccc gtttcgggaa
     1801 ccgaactgag ttgggggcat tgggcacgga cgaaagggcc cgcccgtcgc atcccatcgg
     1861 gaagtcgacg cgtccagggc aatctcaatc atggtgacta ttagcgcgtc cgctctgcgg
     1921 acggcgtcgc gccgtcgcat cctgggcctc gccgccggag ccctggcgtt cagcggcgtc
     1981 agcgccgcgg cgctggcggc agtccaggcc aagagctccc agaaggcggt ggaatatcag
     2041 acccacccca agggcggcca cggctgcaac agctgcaagg tctttcagcc cccgacggct
     2101 tgcaagacgg tcgagagccc ggttcaggcg tccggctggt gcgataagta cgcacgtaac
     2161 taggggcgat ggccggccca tcaatccgct gacggaatag cgaagctctg gtccttctcc
     2221 tccaggggag gaaggactcg ggacgtcagc cgctcgcctt catctgcgca aacgccccca
     2281 cgaaggtgcg gctcttgaag cgccagccat cccgggtgcg cgcgaagatg tcgtgatatt
     2341 cgcccacgaa ctcaggcagg ccctccaacg gggagaatcg gcggccgggt ttcccgtcat
     2401 ggcggtagag ctgcaggtag gtggcgccgg tcgcggtgtc ggcgtcctgc acctcgatca
     2461 gcggcgtcga gcagacgtgg cgcgacatgc gctcggtgtt gtcctggcgg gcctggaagg
     2521 ccttggcgat cttctcgcgg ccgtcgcggg tgacctccgg gcttgcccag accccgtcgt
     2581 cggtgaagag gtcggcgacc ttgccggcct gtccgtgatc caccaggtgg caatagctgt
     2641 agatcagccg ctcgcattcg cgttccgcga gcaggcgttc gatggggtcc atggcggacc
     2701 tcccccagat agcgcgtcca gcgcaggggc agtctcgcag gtcgcgccga atcgcggaag
     2761 agagcggcaa gcccttgccg cctatttctt gttggcgaag tccaggaagc gctggcgcag
     2821 cgtcgggtcg gtcttgaaga cgccggtgaa ctgggtggtg atagtcgaga cgtggcgatg
     2881 gtggacgccg cgcgtggaca tgcactggtg gttggcgtcg atcatcaccg ccacgccggc
     2941 cgggcgcagg ctgtcggtga tggcgtcggc gatctgctgg gtcatggtct cctgggtctg
     3001 gagacgcttg gcgaagatct cgaccacgcg ggcgatcttg gagatgccga ccacgcggtt
     3061 ggtgggcatg taggccacgt aggccttgcc caggaacggc gccatgtggt gctcgcagtg
     3121 gctctccacc tcgatctcgc gcagcatgac gatgtcgtcg tagccctgca cgtcctcgaa
     3181 ggtgcgggag agttccttgg ccggatcggc ggtgtagccc tcgaaccatt cggcgtaggc
     3241 gtcgaccacc cgcttcgggg tgtcgagcac cccttcgcgg cggggatcgt ccccggccca
     3301 ggcgatcagc gttcgcaccg cggccatggc ttcctcgcgg gaggggcgct tggcggcttc
     3361 aagatcaagg tcggccatgt ttgcagaatt tgggccgacc agggttcggt cgcgaatggc
     3421 gtccatggcg ggagaggttc tttccggggc tgagttgcgc cgggacgaag gtcccggaaa
     3481 tacgcgtggc catccctact tcagatggga ttcgcccagg atggttcccg tggcttcccg
     3541 atcctcgcaa ctgtatatgg gccgaacccg tccctctgca acaaggaggg ggcaaccgtc
     3601 accctgcgtt agtttaagaa gaccgatgtc gctcaccctc tacgacacca tggcccgcaa
     3661 gaagcggccg ttcatcccgg ccgatcccag gcgggtgacg atgtatgtct gcggaccgac
     3721 ggtctacaac tacagccaca tcggcaattt ccggcccgtc gtggtgttcg acgtgctgtt
     3781 ccgcgtgctg cgccggctct atggcgaggg ctccgtgctc tatgccgcca acgtcaccga
     3841 cgtggacgac aagatcaacg ccaaggccgc cgaggagggc gtgccgatcg gcgtgatcac
     3901 cgatcgctat ctggccgcct acaacggcga cgccgcggcg ctgggcgcgc tggcgcccac
     3961 cgcccagcca cgggcgacgc agacgatgga cgcgatcatc gcaatgatcg ggcggctggt
     4021 ggacaacacc tcggcctatg ccgccgaggg ccatgtgctc ttcgacaccc aggcctatgg
     4081 cgactacggc aaactctcgg gccggccgct ggacgagatg atcgccggcg cccgggtcga
     4141 ggtcgccccc tacaagcagc accccgccga cttcgtgctc tggaagccgt cgaagccggg
     4201 ggagccagag tgggagagcc cctggggacc gggccggccg ggctggcaca tcgagtgcac
     4261 cgcgatgatc gagcaggagc tgggtctgcc catcgatatc cacggcggcg gcatcgacct
     4321 ggtcttcccg caccacgaga acgagctcgc ccagggcatg tgcgccggcc ccaatggcaa
     4381 aggggggcac gctggctacg ccaactattg gctgcacaac ggcttcctga acatggccga
     4441 cgagaagatg tccaagagcc tgggcaacgt cgcgctcgcc cacgacctgc tgaagtcgca
     4501 gccgggcgag gtgatccgct gggcgctctt ggccgcccac taccgccagc cgctggcctg
     4561 gacggacgat gcgctggccc aggcgcgcaa ttcgctcgac catctctacg gcgtgctggg
     4621 ccgcgcccgg cacatcgacg ccggcggcag cgctgcgctg gtcgacgagc agctcgcgcc
     4681 cctgatggac gacctcaaca cgccctcggc catgtatcag ctcaagaagc tcgccaccga
     4741 cctcgacgcc gccgtgcgcc gcgccgcgcc cgccgcgccg gcgatcaagc aggacctgct
     4801 ggcgttggcg caggtgatgg gctttctgca ggccgacccg caggcctggt tccagggcgg
     4861 cgccgacgcg ggcctgaagg tcgagatcga cgccctgatc gccgcccgcg acgccgcgcg
     4921 cgtcgccaag gattggggcg aggccgaccg cattcgcgcc gaactcacgg cgctgaatat
     4981 cgaggtcatg gacggacccg ccggcgccac ctggcggatg aaggagcagg cctgatgccg
     5041 atacagccgc cgccagccct gaaagccgga cccttcggaa cgcgcggcgg ggcccgcctg
     5101 ggtccccagc ccacggacac caggctgccg ccgcccaagg ccccgtcgg
//
LOCUS       DATAJL010000819         3293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85636,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000819 DATAJL010000000
VERSION     DATAJL010000819.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3293
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85636"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VHN39_15535"
     CDS             complement(<1..516)
                     /locus_tag="VHN39_15535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012289052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX2817804.1"
                     /translation="MAESAGLPEIPLFEDPRVALPPQADAATERFVAEMREYGGAVLD
                     LGADALALCDRAVADTEPYFTKKGAVRVQDAWRKSQAVRELALLPHLHEALFAAYGRK
                     SFAFQTLNFREGSQQELHSDMIHFSSLPERFMCGVWIALEDILPGSGPVTWYPGSHRL
                     PPLTMREAGVEG"
     gene            complement(652..1089)
                     /locus_tag="VHN39_15540"
     CDS             complement(652..1089)
                     /locus_tag="VHN39_15540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008263758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEX2817805.1"
                     /translation="MSLDGTYDDGNIFAKILRGEAPAARVFEDDHVLAFMDVFPQSKG
                     HTLVIPKHSVARNLLDEDPAVLASVILGVQRVTRAVRAALNPDGIVVTQFNGATAGQT
                     VYHLHFHIIPRWEGVALGRHGAGGIADPGELKLLAEQIAAKIS"
     gene            1181..1741
                     /locus_tag="VHN39_15545"
     CDS             1181..1741
                     /locus_tag="VHN39_15545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5655 domain-containing protein"
                     /protein_id="HEX2817806.1"
                     /translation="MTERQQKWFASVQASLERDTGKTIDEWVAIARTCPETKPKARSQ
                     WLREHHGLGSNRGAHVLSVAFPSEMRWDDAGPLRAALWTDPASEAILQALEKAVAKLP
                     DFTVGQRKTYTAWSRKVQMAATRPIKGGHVMVGFAVAPDADPRLAPRGKSESWGDRLK
                     GQLLLTSPDQVDASVEALLRQAWERS"
     gene            complement(1738..2904)
                     /locus_tag="VHN39_15550"
     CDS             complement(1738..2904)
                     /locus_tag="VHN39_15550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817807.1"
                     /translation="MSLKAAVKVCRRVAEIGREAWDACAGNPAYAGNPFIRYDFLNAL
                     EESNCATERTGWGPQHLAIDDDEGRVAAVMPLYLKSHSQGEYIFDHAWADAYERAGGS
                     YYPKLLSAAPFTPATGARFLARPDVGVDEARKFLLGGALTLCERYGASSFHVNFPTGD
                     EWRWMGEQGLALREGQQYHWENRGYATFDDFLGALSSGRRKTIRRERRDATDGLEILC
                     LTGEDLTEDHWDAFFGFYMDTGSRKWGRPYLSRPFFSLLGERMADRVLLIMARKDGRW
                     IAGALNLIGDGCLYGRNWGCVEDVPFLHFELCYYQAIDWAISHGLARVEAGAQGQHKI
                     ARGYLPRPVYSAHYIADPALRSPVERFVMQERQGVEQEMEWLAEEFSPFRKDEG"
     gene            complement(2901..>3293)
                     /locus_tag="VHN39_15555"
     CDS             complement(2901..>3293)
                     /locus_tag="VHN39_15555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEX2817808.1"
                     /translation="PYGRVGPLEQRTHEVLIDHNGPVCVIGFNPYSHAWFAERFPGVL
                     RGLDSYSYKRAAHMEEDQRASYARLEHVAIARPHFLALGLDMLPSHIANGFRIEGLPI
                     VAWTVRNPAQWEAIRDGCDNLIFEGFNP"
BASE COUNT          532 a         1093 c         1164 g          504 t
ORIGIN      
        1 cccttcgacg ccggcctcgc gcatggtcag cggcggcagg cggtggctgc cggggtacca
       61 ggtcacgggc cccgagcccg gtaggatgtc ctcgagcgcg atccacaccc cgcacatgaa
      121 gcgctccggc aggctggaga agtggatcat gtcggagtgc agctcctgct ggctgccctc
      181 ccggaaattg agggtctgga acgcgaagga cttgcggcca taggcggcga acagcgcctc
      241 atgcaggtgc ggcaggaggg cgagctctcg gaccgcctgc gatttgcgcc aggcgtcctg
      301 cacccgcacg gcgccctttt tggtgaaata gggctcagtg tcggcgacag cgcgatcgca
      361 gagcgccaag gcgtccgcgc ctagatccag caccgccccg ccatactccc gcatctcggc
      421 gacgaaccgc tcggtcgccg cgtcggcctg cggcgggagc gccacgcgcg ggtcttcgaa
      481 cagggggatt tccggcaggc cggcggactc agccacgatc agcctgggct cgctgagtgt
      541 cgtcgatcat ggtccagagc caatttgaaa tcgccggcca cacggcccgc gagtccagat
      601 gatggtcccg tccggccgcg cggccaagac actccaggcc ggccacgccg tttagctgat
      661 cttcgccgcg atctgctcgg ccagcagttt cagctccccc ggatcggcta tgccgccggc
      721 gccgtgacgg ccgagcgcca cgccctccca gcgcgggatg atgtgaaagt gcaggtgata
      781 gacggtctgg ccggccgtag cgccgttgaa ctgggtgacc acgatgccgt caggattgag
      841 cgcggcgcga accgcgcggg tcacccgctg cacgcccagg atgacgctgg cgagcacggc
      901 cgggtcttcg tccagcaggt tgcgggcgac cgagtgcttg gggatcacca gggtgtggcc
      961 cttcgactgc ggaaacacgt ccatgaaggc cagcacgtgg tcgtcctcga acacccgggc
     1021 cgccggcgcc tcgccgcgca ggatcttggc gaagatgttg ccgtcgtcgt aggtcccgtc
     1081 caagctcatc gcgctagctc ctgattggag ctgtcgtagc aaatcggccg gaagggtgga
     1141 aacgatgggc gccggtggat cgaacgaaaa gcccacgggc ttgaccgagc ggcagcagaa
     1201 gtggttcgcc tcggtccagg cgagcctgga gcgcgacacc ggcaagacca tcgacgaatg
     1261 ggtcgccatc gccaggacct gcccggagac caagccaaag gcgcgctccc agtggcttcg
     1321 cgaacaccac ggcctgggct ccaaccgcgg ggcgcatgtg ctgtcggtgg ccttcccgtc
     1381 ggagatgcgc tgggacgacg cggggccgct gcgcgccgcg ctctggactg acccggcgtc
     1441 ggaggcgatc ctgcaggcgc tggagaaggc cgtcgccaag ctgccggact tcaccgtcgg
     1501 ccagcgcaag acctataccg cctggtcgcg caaggtgcag atggccgcca cacgccccat
     1561 caagggcggc cacgtcatgg tcggtttcgc ggtggcgccc gacgccgacc cgcggctggc
     1621 gccgcgcggc aagagcgaga gttggggcga ccggctgaaa ggccagctgc tgctgacctc
     1681 gcccgatcaa gtggacgcct cggtggaggc gctgctccgg caggcctggg agcggtccta
     1741 gccttcgtct ttccggaacg gcgaaaactc ctccgccagc cactccatct cctgctctac
     1801 gccctgacgc tcctgcatga cgaagcgttc gacggggctg cggagcgcgg ggtcggcgat
     1861 gtagtgggcg gaatagacgg gtctgggcag atagccgcgg gcgatcttgt gctggccctg
     1921 ggcgccggcc tccacgcggg ccaggccgtg ggagatcgcc cagtcgatgg cctgatagta
     1981 gcagagctcg aaatgcagga agggcacgtc ctcgacgcac ccccagttgc ggccatagag
     2041 gcagccgtcg ccgatcaggt tgagcgcgcc ggcgatccag cggccgtcct tgcgcgccat
     2101 gatcagtagc acccggtcgg ccatccgctc gccaagcagt gagaagaacg ggcggctcag
     2161 atagggccgg ccccatttgc gcgagccggt gtccatgtag aagccgaaga aggcgtccca
     2221 atggtcctcg gtgaggtctt cgccggtgag gcagaggatc tccagcccgt cggtggcgtc
     2281 gcggcgctcg cgccggatgg tcttgcgccg gcccgacgac agcgcgccca ggaagtcgtc
     2341 gaaggtcgcg tagccgcggt tttcccagtg gtattgctgg ccctcccgca aggcgaggcc
     2401 ctgctccccc atccagcgcc actcgtcccc cgtggggaag ttcacgtgga aggatgaggc
     2461 gccatagcgt tcgcaaaggg tcagggcgcc gcccagcaga aatttgcggg cctcgtcgac
     2521 ccccacgtca ggccgggcca ggaaccgcgc gccggtggcg ggcgtgaacg gtgcggccga
     2581 gaggagcttg gggtagtagc tgccgccggc ccgctcatag gcgtcggccc aggcgtggtc
     2641 gaagatgtat tccccctggc tgtgggattt cagatagagc ggcatgaccg cggcgacccg
     2701 gccctcgtcg tcgtcaatgg ccaggtgttg cggcccccag ccggtgcgtt cggtggcgca
     2761 gttcgactcc tcaagcgcat tcaggaagtc gtagcggatg aaggggttgc cggcgtaggc
     2821 ggggttgccg gcgcaggcgt cccaagcctc gcggccgatc tcggcgacac ggcggcagac
     2881 cttcaccgcc gccttcaggc tcacggatta aagccctcga agatcaggtt gtcgcagccg
     2941 tcgcggatcg cctcccactg cgcggggttt cgcacggtcc aggcgacgat cggcaggccc
     3001 tcgatgcgaa aaccgttggc gatgtggctg ggcagcatgt cgagacccag cgcgaggaag
     3061 tgcggccgtg cgatcgccac gtgttccagg cgcgcgtagc tggcccgctg gtcctcctcc
     3121 atgtgcgccg cgcgcttgta ggaatagctg tcgaggccgc gcagcacgcc cgggaaccgc
     3181 tcggcaaacc aggcgtggga ataggggttg aagccgatca cgcagaccgg gccgttgtgg
     3241 tcgatcagca cctcgtgggt ccgctgctcc agcggcccca cgcggccgta ggg
//
LOCUS       DATAJL010000820         4027 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98492,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000820 DATAJL010000000
VERSION     DATAJL010000820.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4027
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98492"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VHN39_15560"
     CDS             <1..231
                     /locus_tag="VHN39_15560"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2817809.1"
                     /translation="NLNTTFTALAGVAVPSLIVVGADDTPFLAASDYMAAKIPGARKV
                     VIEGAGHSANIDQPEAFNAALLDFLQGAGLIA"
     gene            303..857
                     /locus_tag="VHN39_15565"
     CDS             303..857
                     /locus_tag="VHN39_15565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2817810.1"
                     /translation="MAAAPPSADDPLLAAYLERRTNLVRFLAARSGSLAAAEDIAQEL
                     YLKIAGRDRTAEVGAPVALLYRMALNLMLDKARGEARSTARDTAWRQVARSEVGGVDV
                     ADDPPADEAAASAQRLRQLIAAVRDLPPQAGRAFRLHKLEGLSHAETARAMGLSVKAV
                     EKHISAALKALTARLAARSDAKTT"
     gene            943..1941
                     /locus_tag="VHN39_15570"
     CDS             943..1941
                     /locus_tag="VHN39_15570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEX2817811.1"
                     /translation="MSEAWTRGDDARRASAADWLVRLQAPELDEAQAADFDAWLLAHP
                     ANAAAYDASLAVMLELETAAPDILHNIQTLPAPRSSQHRPAAALRGWLVAGGLAAAAA
                     VALAVMPFSALAPATQSFATAKGEHRTVRLADGSAIELNAGSQLTVTLGRHDRRVVMP
                     QGEAVFDVAADKARPFLIAAGDRTVRVVGTRFDVRRRGAELSVSVERGVVEVRPSNDA
                     AGRVFRLHPGQRLDAAQGASAVQLSLADPQAVESWRTGRLIYRDQPLGDVVADLNQQF
                     REPIILEDAALAQVRVSGVLVLDDQAAVIRRLALLAPIKALPSPRGVLLRSDPAAK"
     gene            2266..>4027
                     /locus_tag="VHN39_15575"
     CDS             2266..>4027
                     /locus_tag="VHN39_15575"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817812.1"
                     /translation="MTPGVTVLGPPTPVVAELLVTARKRPERLDSLPAGVSVVSGQQL
                     VVTNAYDARETAGQLVGVLTTNLGPGRDKLLMRGLSDGAFTGRARSTVSTYLDDAPIN
                     YNSPDPDLRLVDVEQVETVRGPQGALYGSGALAGVYRIVTNKPDPDHFAAGVSATAAS
                     TRGGAPTYEADGYLNAPLAAGRAALRLVAYYDDQGGYLDNVSLRLSNVDSTVRTGGRA
                     ALRLELSDTWAADLTLVGQHLSSRDTQYTTLAARDQRANQVLEASNNDFAQGAVTLRG
                     ELAGADLAATTSYVQHAYSSLYDATQVAIQFDSGATLGVYSEAARIRRLVQDVVLTSA
                     GSSEVSWLVGAYGSMSLERTPSALDILANTGAIPLALAVSQGRLSRVYNEERRDHLQE
                     LAVYGEATWRFAPGWTLAAGARAFSSHLEVKADISGAPPTAARVVDETSSFSGVSPKL
                     SLQYEFMDGALVYGLYSEGFRPGGVNTTNFVGIKPSRTTYQPDRLKNFELGAKGRFLD
                     QRLVVRAAAFFDVWSNIQSDQYRIPSGLAYTANVGDAHVRGLEAEAAYDWGFGLSVQA
                     NALYSAPKFLNANPDFANTLG"
BASE COUNT          584 a         1581 c         1269 g          593 t
ORIGIN      
        1 aatctgaaca cgaccttcac cgcgctggcc ggcgtcgccg tcccgtcgct gatcgtggtc
       61 ggcgccgacg acacgccctt cctggccgcc agcgactaca tggccgccaa gatccccggc
      121 gcccggaagg tggtgatcga gggcgccggc cacagcgcca acatcgacca gcccgaggcg
      181 ttcaacgcgg cgctgctgga cttcctgcag ggcgcggggc tgatcgcatg aacgcacgta
      241 cggcgtagtt gccgcccacc cacgaattgc ggcacaccga agcttcgctt gtcctggacg
      301 ctatggccgc cgccccgcct tccgccgacg atcccctgct ggccgcttac ctggagcgcc
      361 ggaccaacct cgtgcgcttc ctggcggccc gttccggctc gctcgcggcg gccgaggaca
      421 tcgctcagga gctctacctc aagatcgccg gccgcgaccg gacggccgag gtgggcgccc
      481 ccgtggccct gctctaccgg atggccctca acctgatgct cgacaaggcc cgcggcgagg
      541 cccgttcgac ggcccgcgat acggcttggc ggcaggtcgc ccgcagcgag gtcggcggcg
      601 tcgatgtggc cgatgatccc cccgccgacg aggccgcggc ctccgcccag cgcctgcgcc
      661 agctgatcgc cgcggtgcgg gacctgccac cccaggccgg ccgcgctttc cgcctgcaca
      721 agctcgaagg cctcagccac gccgagaccg cgcgggccat gggactgtcg gtgaaagccg
      781 tcgaaaagca catcagcgcc gctctgaagg cgcttacggc caggctcgcg gcgaggagcg
      841 atgcaaaaac aacttagaat tgttgtaacc gacctagggg caggtccggc ccgcggcgtc
      901 tttatgctga gactatgaga cttgggtgcg tgggatttgg cgatgagtga ggcctggacc
      961 aggggagacg acgccaggcg cgcttccgcg gccgactggc tcgtgcgcct gcaggcgccg
     1021 gagctggacg aggctcaagc cgcggatttc gacgcttggc tgctggccca cccggccaac
     1081 gccgccgcct atgacgcctc gctcgccgtc atgctggagc tggaaacggc cgcacccgac
     1141 atcctgcaca acatccagac cttgccggcc ccccgatcca gccaacaccg tcccgccgcg
     1201 gccctccgcg gctggctcgt ggccggaggc ctcgcggccg ccgccgccgt cgcgctcgcc
     1261 gtcatgccgt tcagcgcgct cgcccccgca acccagagct tcgccaccgc caagggcgag
     1321 caccgcaccg tcaggctcgc cgacggctcg gccatcgagc tcaacgccgg ctcgcagctc
     1381 accgtcaccc tcggccgcca cgaccgccgc gttgtgatgc cacagggcga agcggtgttc
     1441 gacgtcgccg cggacaaggc ccgccccttc ctgatcgccg ccggcgaccg caccgtgcgc
     1501 gtggtcggca cccgattcga cgtgcgccgc cgcggcgccg agctctccgt cagcgtcgag
     1561 cgcggcgtgg tcgaggtcag gcccagcaac gacgccgcgg ggcgcgtctt ccgcctgcat
     1621 ccgggccagc gccttgacgc cgcgcagggc gcgagcgccg tccagctcag cctcgccgat
     1681 ccgcaggccg tcgaaagctg gcgcaccggc cggttgatct accgcgacca gccgctgggc
     1741 gacgtggtcg ccgacctgaa ccagcagttc cgcgagccga tcatcctgga agacgcggcg
     1801 ctcgcccagg tccgcgtctc cggcgttctg gttctcgacg accaggctgc ggttattcgc
     1861 cgcctcgctt tgctcgcccc catcaaggcg ctaccctcac cgcgaggcgt tctgcttcgc
     1921 agcgatccgg cggcgaagtg atgaggggga caaagggcca tacccagccc gtcggccttt
     1981 ctgcgtgggt cccttgcggg gctctgcctc ctcacgctcg ccagccgagc tgaggccgct
     2041 gaagcgcgcc gccgcttcga catcgcccca aagccctacg ccgacgcgct catcgacctg
     2101 gccgttcagg ccaatatctc gctcctcggg gcctcggcct gcggggccgg cggcagaact
     2161 cagctctccg gccgccatgt cctgagcgat gcgctggccc gcgtcctggc cggggccccc
     2221 tgcacgtggc gcatcatcga cgcccggact gtccgcatca ccgcggtgac cccaggcgtc
     2281 acggtcctgg gcccgcccac gccggtggtc gccgaacttc tggtcaccgc gcgcaagcgg
     2341 cccgagcggc tggacagcct gcccgccggc gtcagcgtcg tctccggcca gcagctggtc
     2401 gtcaccaacg cctatgacgc gcgcgagacc gccggccagc tggtgggcgt gctgaccacc
     2461 aacctcggcc ccggccgcga caagctcctg atgcgcggcc tctccgacgg cgccttcacc
     2521 ggccgcgccc gctcgacggt ctcgacctac ctcgacgacg ccccgatcaa ctacaactcc
     2581 cccgaccccg acctgcgctt ggtggacgtc gaacaggtgg agaccgtccg tggcccgcaa
     2641 ggcgcgctct acggctccgg cgcgcttgct ggcgtctacc gtatcgtcac caacaagccc
     2701 gacccggacc acttcgccgc cggcgtcagc gccacggccg cctctacccg cggcggcgcg
     2761 ccgacctacg aggccgacgg ctaccttaac gcgcccctgg ccgccggccg cgcggccctg
     2821 cgcctggtgg cctattacga cgaccagggc ggctatctcg acaacgtctc gctgcgcctg
     2881 tccaacgtgg actccaccgt gcgcaccggc ggccgcgcgg cgctgcgcct ggagctcagc
     2941 gacacctggg ccgccgacct gaccctggtc ggccagcacc tcagctcgcg cgacacccag
     3001 tacaccaccc tggccgcccg cgatcagcgc gccaaccagg tcctcgaagc ctccaacaac
     3061 gactttgcgc aaggcgccgt cacccttcgc ggcgaacttg ccggcgccga tctcgccgcc
     3121 accacctcct atgtccagca cgcctattcc agcctctacg acgcgaccca ggtggccatc
     3181 caattcgaca gcggcgcgac cctcggcgtc tattccgagg ccgcgcgcat ccggcgtctg
     3241 gttcaggacg tggtgctcac ctccgcgggc tccagcgagg tcagctggct ggtcggcgcc
     3301 tacggctcga tgtccctgga gcggaccccc tcggcgctgg acatcctggc caacaccggt
     3361 gcgatccctc tcgccttggc ggtcagccag gggcgtctta gccgcgtcta caacgaggag
     3421 cgccgcgatc acctgcaaga gctcgccgtc tacggcgaag cgacctggcg cttcgccccg
     3481 ggttggacgc tcgcggccgg ggcgcgggcc ttcagcagtc acctggaggt caaggccgac
     3541 atcagcggcg ccccgcccac cgcggcgcgc gtggtcgacg agacctcatc cttctccggc
     3601 gtttcgccca agctctctct gcagtacgag ttcatggacg gggcgctggt ctacgggctc
     3661 tattccgagg gcttccgccc cggcggcgtc aacaccacca atttcgtggg cataaagccg
     3721 tcccgcacca cctaccaacc cgaccggctg aagaacttcg agctgggcgc gaaggggcgc
     3781 ttcctggatc agcgcctcgt cgtacgggcc gccgccttct tcgacgtctg gtccaacatc
     3841 cagtccgacc aataccgcat cccctcgggt ctggcctaca ccgccaacgt gggcgacgcg
     3901 catgtccgcg gcctggaagc cgaggccgcg tacgactggg gcttcggctt gagcgtgcag
     3961 gccaacgccc tctattcggc gcccaagttc ctgaacgcca atcccgactt cgccaacacc
     4021 ctggggt
//
LOCUS       DATAJL010000821         1570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98592,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000821 DATAJL010000000
VERSION     DATAJL010000821.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98592"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..754)
                     /locus_tag="VHN39_15580"
     CDS             complement(<1..754)
                     /locus_tag="VHN39_15580"
                     /inference="COORDINATES: protein motif:HMM:NF016296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family DNA-binding domain-containing
                     protein"
                     /protein_id="HEX2817813.1"
                     /translation="MTLAIHLFPKPADPPMPVALFLGGLAGLWGIYGLIFLATGNATL
                     GQAGVDAAANVLPLAALAIATRAVLMRVFARTPSAQVASHAALAIVFALAWYVATVLL
                     LALFGWLAGRSFLIRGFTGPALTWQAFQGLILYSAVAAACYALRAPVAPAQTVREIAA
                     DAALPLERYLIREGEDFRPVDVSDIISIAGAQDYSEVSTPSGHHLVRMSLGEFETRLD
                     PRRFIRVHRSAIIQLAFLERAEPAGGGRMLAHM"
     gene            complement(827..>1570)
                     /locus_tag="VHN39_15585"
     CDS             complement(827..>1570)
                     /locus_tag="VHN39_15585"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817814.1"
                     /translation="VQAARVLFLAGAAMMAAVAVLGALRPRSVFDNLTAEPAPTRALD
                     DLKRLAGHWPIYPALTIWFLFSFAPGSGTPLQYHLQNTLHASDAQWGQWNAIFATAFI
                     PTYLLFGALCRRFPLRTLLWWGTVFAVPQMVPLMFIPSVNGALVGAAAVGLMGGVATA
                     AYIDLIIRSAPPGLQGTTWMMAISLYWIAIRFGDVLGTHLYERFGGFGVCVIAITAVY
                     ALILPVLLLVPKRLIATADGEVAPKPAGA"
BASE COUNT          292 a          493 c          593 g          192 t
ORIGIN      
        1 tcatgtgcgc cagcatgcgc ccgccgccgg ccggctccgc ccgctccagg aacgcgagct
       61 ggatgatagc cgagcggtgg acgcggatga aacggcgggg atcgaggcgg gtctcgaact
      121 cgccaaggct catgcgcacg aggtggtggc cggaaggggt ggagacctcg gagtagtcct
      181 gggcgccggc gatgctgatg atgtcgctga cgtcgacggg ccggaaatcc tcgccctcgc
      241 ggatgagata gcgttccagc ggcaaggcgg cgtcggcggc gatctcgcgg acggtctgcg
      301 cgggagcgac cggcgcgcgc agggcgtagc aggccgcggc gaccgcgctg tagaggatca
      361 ggccctggaa cgcctgccag gtgagcgccg ggcccgtgaa cccgcggatg aggaagctgc
      421 gtccggcgag ccagccgaag agcgccagca agaggactgt cgcaacgtac caggccagcg
      481 cgaagacaat ggctagggca gcatggctgg cgacctgcgc ggacggcgtg cgagcgaaaa
      541 ccctcatcag aaccgctcgg gtcgcgattg cgagagcggc cagcggcagc acattggctg
      601 cagcatcgac gccggcctgg cccagggtcg cgttccccgt cgccaggaag atcagcccgt
      661 agatgcccca gaggccagcg agaccgccca ggaacagggc caccggcatg ggtggatccg
      721 ccggcttcgg gaagaggtgg atggcgaggg tcatgctggt caggctgcca cggcgggaga
      781 aagtgtccag tcttctagcg tcacaatccg gcgacgggat ggctggtcac gcgccggccg
      841 gcttgggcgc gacttcgccg tcggcggtgg cgatcaggcg tttggggacc agcagcagca
      901 caggcaggat cagggcgtag accgcggtga tggcgatcac gcagacgccg aagcctccga
      961 accgctcgta gaggtgggtt cccaggacat cgccgaagcg gatggcgatc cagtagaggc
     1021 tgatcgccat catccaggtc gtgccctgca ggcccggcgg cgccgaacgg atgatcaggt
     1081 cgatgtaagc cgctgtggcg acgccgccca tcaggcccac cgcggcggcg ccgaccaagg
     1141 cgccgttcac cgacgggatg aacatcagcg gaaccatctg cggcaccgcg aagaccgtgc
     1201 cccaccacaa gagcgtcctc aaggggaagc ggcggcagag cgcgccgaac agcaggtagg
     1261 tgggaatgaa ggccgtggcg aagatggcgt tccactggcc ccactgggcg tcgctggcgt
     1321 gcagggtgtt ctgcagatga tactgcagcg gggtgcccga accgggcgcg aaggagaaca
     1381 ggaaccagat cgtcagcgcc ggatagatcg gccagtgacc ggccagccgc ttgaggtcgt
     1441 ccagcgcgcg cgtgggggcg ggctcggcag tcaggttgtc gaagacgctg cgcggccgaa
     1501 gcgcgcccag gaccgccacc gcggccatca tcgccgcgcc cgcgagaaac aggacccgcg
     1561 cggcctggac
//
LOCUS       DATAJL010000822         2554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85760,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000822 DATAJL010000000
VERSION     DATAJL010000822.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2554
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85760"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..409
                     /gene="gspG"
                     /locus_tag="VHN39_15590"
     CDS             <1..409
                     /gene="gspG"
                     /locus_tag="VHN39_15590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HEX2817815.1"
                     /translation="SGDAGFTLLELLVVLAILGLLAAIVAPQVLRYLGTSRTQAAKVQ
                     IENISASLDHFQLDVGRYPTPEEGLEGLVKAPSSAPNWNGPYLKKSSALLDPWGQKYL
                     YVVPGKHGEADVYTLGSDHVEGGTGEAKDVGNW"
     gene            393..815
                     /locus_tag="VHN39_15595"
     CDS             393..815
                     /locus_tag="VHN39_15595"
                     /inference="COORDINATES: protein motif:HMM:NF023444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015627 - type II protein secretion
                     system complex [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspH/FimT family pseudopilin"
                     /protein_id="HEX2817816.1"
                     /translation="MSATGSRPDAGATLIEMLVVVGILGLVAVLVFPAWISPLQRVQL
                     YEARAALVSHLRTARADSIRQGAQVTLELTDGGRGYGWEQRRTALPAGVVVDGEPRAI
                     TFFADGSSSGGELKVISRGRSLLVEVDSASGLTEAPPG"
     gene            812..1198
                     /locus_tag="VHN39_15600"
     CDS             812..1198
                     /locus_tag="VHN39_15600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817817.1"
                     /translation="MTSSSRLHSQSGSVLVEAMVAVAVIAMMLTVTYRAVGESVLRAR
                     AAEASRTAGLIAQSRLAMVGAEIPLRPGDTTGVDTGFTWRVLIEPAAQDRSAMGELLS
                     VTASVRRPAGAADLAVLRSQRLAPAV"
     gene            1200..1856
                     /locus_tag="VHN39_15605"
     CDS             1200..1856
                     /locus_tag="VHN39_15605"
                     /inference="COORDINATES: protein motif:HMM:NF019575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEX2817818.1"
                     /translation="MVPPKKRRDGGFTLVEMLVSLALLGMAAVLMLEGLQSGQRLWAG
                     EASRTARGETIEAAQGSLRAKLERLRPVTRFGGSTSFADVDGSDRQLVFIAPPADVER
                     PAAARRYRLALSDRGDLLLGSAEAGADPQGVYRDQVLLSDVRALSISYYGRGGAGEAP
                     QWWSDWKRREAPPELVNIKAELKAGDRRVWPELVVHPAATVDTLCSIDATSGLCRGRE
                     "
     gene            1853..>2554
                     /locus_tag="VHN39_15610"
     CDS             1853..>2554
                     /locus_tag="VHN39_15610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817819.1"
                     /translation="MTLSELLNSDVETLVQWIRAGFAWWFGELAGLAPRQVREAFESR
                     PSLTAEPLVDGGYRLTRHGRTVMQRVGSARRSRPVTLRLAPGAALIREVAAPPLPERD
                     LRRMLELDIDRLTPFRSDQVFVAVVLGAAGSRVARVAAVPRETAILAVQQALAAGLEP
                     RALGVAGAEAAEQAFDFLPRMRGDGAVPRPRFSPALIWGAVGALALANLGVAVGRDML
                     QIHGLQEQMDAQRPQV"
BASE COUNT          339 a          862 c          931 g          422 t
ORIGIN      
        1 gtccggagac gccgggttca ccctcctgga gctgctggtc gtgttggcga tcctggggct
       61 cttggcggcc atcgtcgcgc cccaggtgct gcgctacctg ggaacctcgc gcacccaggc
      121 ggccaaggtc cagatcgaga acatcagcgc gtcgctggat cacttccagc tcgatgtcgg
      181 ccgctatccg acgccggaag aagggctgga aggtctggtc aaggcgccgt cgagcgcgcc
      241 caactggaat ggtccctacc tcaagaaatc ctcggcgctc ctcgaccctt ggggccagaa
      301 gtacctctat gtggtccccg gtaaacacgg cgaggctgac gtctataccc taggctccga
      361 ccacgtcgaa gggggaacgg gtgaggcgaa agatgtcggc aactggtagc cgccccgacg
      421 ccggcgccac cctcatcgag atgctggtgg tggtcggcat cctgggtctg gtggccgtcc
      481 tggtgttccc ggcctggatc agcccgctgc agcgcgttca gctctacgag gcgcgcgccg
      541 ccctggtcag ccatctgcgc acggcgcgcg cggattcgat ccgccagggc gcccaggtga
      601 cgctggagct gaccgacggc ggacgcggct acggctggga gcagcggcgc acggcccttc
      661 cggccggcgt cgtcgtcgac ggcgagcccc gggcgatcac ctttttcgcg gacggctcgt
      721 cttccggtgg cgagctgaag gtgatcagcc gtggccgcag tctgttggtg gaggtggatt
      781 cggcgagcgg cctgaccgag gcgccgcccg gatgacctcc tcgtctcgcc tgcattcgca
      841 gtccggctcc gttctcgtcg aggcgatggt ggcggtggcg gttatcgcca tgatgctgac
      901 cgtcacctat cgcgcggtcg gcgagagcgt actgcgcgcc cgggccgcgg aggccagccg
      961 aaccgcgggc ctcatcgccc agtcgcggct ggccatggtc ggcgccgaga ttccgctgcg
     1021 gccaggcgac acgaccggcg tcgacaccgg atttacgtgg cgcgtgctca tcgaacccgc
     1081 ggcgcaggat cgcagcgcca tgggtgagtt gctctcggtg acggccagcg tccgccgccc
     1141 agccggcgcg gctgacctcg cggtgcttcg cagtcagcgc ctggccccgg cggtctgacg
     1201 tggtccctcc gaaaaagcgc cgcgacgggg gcttcacgct ggtcgagatg ctcgtcagct
     1261 tggccctcct gggtatggcg gccgtcttga tgctggaggg tctgcagtcc ggccagcgac
     1321 tttgggctgg agaggcgtcg cggacggctc gcggcgagac catcgaggcc gcccaggggt
     1381 cgctacgcgc gaaactggag cgcctgcgtc cggtcacccg gttcggtggg tccacgtcgt
     1441 tcgccgacgt cgacggcagc gaccggcaac tggtcttcat cgctccgccc gccgacgtcg
     1501 aacgtccggc cgcggcgcga cgttaccgat tggcgctgag cgatcgcggc gacctgctgc
     1561 tgggctcggc cgaggccggc gccgacccac aaggcgtcta tcgcgatcag gtcttgctga
     1621 gcgacgtccg ggcgctgagc atcagctact acggccgcgg cggcgccggc gaggctccgc
     1681 aatggtggtc cgactggaaa cgtcgcgagg cgccgccgga gttggtgaac atcaaggccg
     1741 aactgaaggc cggagaccgt cgtgtttggc cggagctggt tgtccatccc gcggccacgg
     1801 tcgatacgct gtgcagcatc gacgccacct ccggactctg ccggggtcgg gaatgaccct
     1861 ctccgagctg ctcaactccg acgtggagac cctggtccag tggatccggg ctgggttcgc
     1921 ctggtggttc ggtgagctgg cggggttggc gccgcggcag gtgcgcgagg cgtttgagtc
     1981 gcgtccctcg ctgacggccg agccgctggt cgatggcggc taccggctga cgcggcatgg
     2041 ccggaccgtg atgcagagag tagggtccgc ccggcggtca cgaccggtta ccctgcgcct
     2101 ggcgcctggc gccgcgctga tccgcgaggt cgcggcgccg cccctgccgg agcgtgacct
     2161 gcgccggatg ctcgaactcg acatagaccg gttgacgccc ttccgctccg atcaggtctt
     2221 cgtggccgtc gtcctgggcg cggccgggtc gcgcgttgca cgcgtcgcgg ccgttccgcg
     2281 cgagacggcc atacttgccg ttcagcaggc gctggcggcc ggcctggagc cgcgcgcgct
     2341 gggcgtggcc ggcgcggagg cggcggaaca ggcgttcgac ttcctgcccc ggatgcgcgg
     2401 ggacggcgcc gtcccccgtc caaggttcag cccggccctg atatggggcg cggtcggagc
     2461 cttggcgttg gccaatcttg gcgtcgcggt cggtcgcgac atgctgcaga ttcacgggct
     2521 ccaggaacag atggacgccc agaggcccca ggtt
//
LOCUS       DATAJL010000823         2126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_123038,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000823 DATAJL010000000
VERSION     DATAJL010000823.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123038"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..613)
                     /locus_tag="VHN39_15615"
     CDS             complement(<1..613)
                     /locus_tag="VHN39_15615"
                     /inference="COORDINATES: protein motif:HMM:NF024816.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2817820.1"
                     /translation="MTSWKTGQIKVTFGSVTPAAPAPAPDARPAAFAAIRAAVEAQDY
                     ARAGQLAEAALAAGLEHPVVLNLAALKAETEERFEDALRLLERAVALAPADAAAHNAL
                     GLCLRRLERHTEALQQFDQAVDLAPAFAGAHSARGATLEALGRLTEADGAFRAAIALQ
                     RDNLGALAGLANLMSRRGAHAEARPLALQVLAAQPGYPDAVNVV"
     gene            complement(731..2011)
                     /locus_tag="VHN39_15620"
     CDS             complement(731..2011)
                     /locus_tag="VHN39_15620"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2817821.1"
                     /translation="MTGGAAPPVNGGFDVYELFGEARVPLVSDMPFAKNISMELGYRF
                     SNYSSVGNTNTYKVAGDWEVIDGLRFRGGYNRAVRAPNVIELFAPQNVVLDGTQDPCA
                     GLSAANPLVATCASVFHLTTGQVLAIEKNPANQYNGQVGGNPNLKPEISDTYTAGVVW
                     QPSFVPGLNISLDYFNIKVDQFIGGIGANLILSQCLSTQNPFFCNLVHREPGNNSLFI
                     DNTGFVQDTTLNTGSLKTTGVDLNVSYRTDLSTLGLGDNGSVSVNMVGTWLDQLDTQP
                     LPGGPTYNCKGLYGTVCGVPAPEWRHKARLTWNTPYSYGDWVKSLSFSAQWRYFGKVT
                     LDAYNSDPQLNNPGLQYETDRTFHSTSYIDLTANFTVHNNLNFRVGVNNVFDKDPPIV
                     GSSNCPVGACNGGTFAQVYDALGRFVFVGLSADF"
BASE COUNT          342 a          678 c          742 g          364 t
ORIGIN      
        1 ccacgacgtt gaccgcgtcc ggatagccgg gctgggcggc cagcacctgc agcgcaagcg
       61 gcctggcctc cgcgtgcgcg ccgcgacggc tcatcagatt ggccaagccc gcgagcgcgc
      121 cgagattgtc gcgctgcagc gcgatcgctg cgcgaaaggc cccatcggct tcggtcaggc
      181 ggccgagcgc ctccagggtc gcgccgcgcg cgctgtgggc gccggcgaag gcaggcgcca
      241 ggtccaccgc ctggtcgaac tgctgaagcg cctcggtgtg ccgctccagt ctgcgaaggc
      301 acagtcctag cgcgttgtgc gcggcggcgt cggccggggc gagcgcgacc gcccgctcca
      361 ggaggcgcag ggcgtcctca aagcgctcct cggtctccgc cttcagggcg gccaggttga
      421 ggaccactgg atgttccagg ccggccgcca gagccgcctc ggccaattgg ccggcgcgcg
      481 cgtagtcctg cgcctccacg gccgcgcgga tcgcagcgaa tgccgccggc ctggcgtcag
      541 gggccggcgc tggggccgcc ggtgtcaccg acccgaaagt caccttgatc tggccggtct
      601 tccaactggt caacgcccaa gtctccacgg gccgaaccca gccctgaacg cctgattacc
      661 cgatcccggc gcaaaagaag agggcggcgg atcgctccgc cgcccccgat ctcaactcgg
      721 tctgaccgcc ttagaagtct gcggagaggc ccacgaagac gaaacggccg agcgcgtcgt
      781 agacctgcgc gaacgtgccg ccgttgcagg cgcccacggg gcagttcgag gagccgacga
      841 tcggcggatc cttgtcgaac acgttgttca cgccaacccg gaagttcagg ttgttgtgga
      901 cggtgaagtt ggccgtcagg tcgatgtagc tggtcgaatg gaacgtccgg tcggtctcat
      961 attgcaggcc ggggttgttc aattgcgggt cgctgttgta ggcgtccaag gtcaccttgc
     1021 cgaagtagcg ccactgggcc gagaagctca ggctcttcac ccagtcgccg taggagtagg
     1081 gcgtgttcca ggtcaagcga gccttgtggc gccattccgg agccggaacg ccgcacaccg
     1141 tgccgtagag gcccttgcag ttgtaggtcg ggccgcccgg caggggctgg gtgtccagtt
     1201 ggtcgagcca ggtgccgacc atgttgaccg aaaccgagcc attgtcgccg agaccaagcg
     1261 tcgacaggtc ggtgcggtag ctgacgttca gatcgacgcc cgtggtcttc agcgaaccgg
     1321 tgttgagcgt ggtgtcctgc acgaagccgg tgttgtcgat gaacagcgag ttgttgcccg
     1381 gctcacgatg gacgaggttg cagaagaacg ggttctgcgt ggacaggcac tggctcagaa
     1441 tgaggttcgc gccgatgccg ccgatgaact ggtcgacctt gatgttgaag tagtcgagcg
     1501 agatgttcag gcccgggacg aagctcggct gccagacgac gcccgcggta taggtgtcgc
     1561 tgatttccgg cttcaggttc gggttgccgc ccacctggcc gttgtactgg ttggccgggt
     1621 tcttctcgat cgccagcacc tggccggtgg tcaggtggaa gacgctggcg caggtggcca
     1681 ccagcgggtt ggccgccgac aggccagcgc aggggtcctg cgtgccatcc agcacgacgt
     1741 tctgcggcgc gaacagttcg atgacgttcg gggcgcggac ggcgcggttg tagccgccac
     1801 ggaagcgcag gccgtcgatc acttcccagt cgccggccac cttgtaggtg ttggtgttgc
     1861 cgaccgagga gtagttcgag aagcgatagc ccagttccat ggagatgttc ttggcgaagg
     1921 gcatgtcgct gaccagcggc acgcgggcct cgccgaacag ttcgtagacg tcgaagccgc
     1981 cattgaccgg cggcgccgcg ccgccggtca atggcggctt cgacgtctac gaactgttcg
     2041 gcgaagcccg cgtgccgctg gtcagcgaca tgccctacgc caaggatatc tcgctcgagc
     2101 tcggctaccg gttctcgaac tactcc
//
LOCUS       DATAJL010000824         2716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98632,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000824 DATAJL010000000
VERSION     DATAJL010000824.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98632"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..418)
                     /locus_tag="VHN39_15625"
     CDS             complement(125..418)
                     /locus_tag="VHN39_15625"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HEX2817822.1"
                     /translation="MSIGVIATLRIQDGKAEEFEAFATELAKQVRANEPGNLAYQLTK
                     SRTEPNTYKFLEVYKDQDALTHHGGTDYFKAAGPKFAAVLGGRPEIEYLDGIG"
     gene            complement(502..789)
                     /locus_tag="VHN39_15630"
     CDS             complement(502..789)
                     /locus_tag="VHN39_15630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817823.1"
                     /translation="MVKEFAARHGSALRSLAMLVGLLATIAAVVVGAILLVVFTATVA
                     VIAVMASALLGFAGLALRARRTAQARRNDGVIEARHLGGHHWVAYGWNERA"
     gene            complement(891..1586)
                     /locus_tag="VHN39_15635"
     CDS             complement(891..1586)
                     /locus_tag="VHN39_15635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEX2817824.1"
                     /translation="MSFWRKIAGLAARNLDEAECDVCPPGLPGEDPAFSTAVTALGAK
                     LAKADGHAQAEEFDAFSQVFMSEPASEGNVRRLYQLARQTTRGFESYARRLEKRYRAC
                     PQLLEDVLDGLFFVATSDGVVTSDELAYLARVSELFGQSPLMFRRLKATHLGLEAGDP
                     YAVLGVAHDACDADVRAAWRAMLSEAHPDRARGRGLPAEFIEVAEAKAAAINAAFDTA
                     MRERRAMALQGAA"
     gene            1646..>2716
                     /locus_tag="VHN39_15640"
     CDS             1646..>2716
                     /locus_tag="VHN39_15640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase N-terminal
                     domain-containing protein"
                     /protein_id="HEX2817825.1"
                     /translation="MDRSWRFWIDRGGTFTDVIGQASDGAETSLKLLSASPAYPDAAV
                     EAMRRILGTAPGEPFPADRVEAIKMGTTVATNALLERAGAKTLFVTTQGFADSVLIGD
                     QARPDLFALTIVRPAPLYSGVVEADERLDAAGAVVRPLDTAALTEKLKEAVAQGYVSA
                     AIAFLHADLNPAHEIAAGEIAKAVGFSFVALSHEVSPLPRFIPRAETTIADAYLTPIL
                     RDYVRQVADAVAGAPLFFMTSAGGLVRAEAFRGKDAVVSGPAGGVVGVARTAAQASAP
                     AVLGFDMGGTSTDVCRYAGQLERRDTAKVAGAKIRSPMLDVETVAAGGGSILAFDGMR
                     ARAGPASAGANPGPAAYGRGGPA"
BASE COUNT          412 a          959 c          920 g          425 t
ORIGIN      
        1 cccgggcggg gcaggcaatg tttcaagact ttgagacggc gccggcgatc cggccttcgg
       61 ccaccgccgc gtcgagcgcc gtctcaaagt cttgaaacat tgcctgcccc gcccgggggc
      121 cgcctcagcc gattccgtcg aggtattcga tctccggccg cccgcccagg acggcggcga
      181 acttcgggcc cgcggccttg aagtagtcgg tcccgccgtg atgggtcagc gcatcctggt
      241 ccttgtagac ctccaggaat ttgtaggtgt tgggctcggt gcggctcttg gtcagctgat
      301 aggcgaggtt ccccggctca ttggcgcgga cctgtttggc caactccgtc gcgaaggctt
      361 cgaattcctc ggccttgccg tcctggatcc tcaaggtcgc gatcacgccg atgctcatgc
      421 cgtcctcccg aacgtttgtt tgaaatgacg gtaggggcgc ggcggcgcgc gggcaagcac
      481 gctcaggtca gcgaccggta tttaggcgcg ctcgttccag ccgtaggcca cccagtggtg
      541 gccgcccagg tggcgggctt cgatgacgcc gtcgttacgg cgggcctgcg ccgtacggcg
      601 ggcccgaagc gctaggccgg cgaagccgag gagggccgag gccatcaccg cgatcactgc
      661 gaccgtcgcg gtgaacacga cgagtaggat ggcgcccacc accaccgcgg cgatggtcgc
      721 tagcaggccc accagcatag ccaggctgcg cagggccgat ccgtgacggg cggcgaactc
      781 tttcaccatg gcgtcctcat gagcccatat gtcggggcca gactgaatat gtcgtaccaa
      841 gggttaccgg cgtcaactcc ggacaacctg aaagggtgca ttgcgcgcat ttatgccgcg
      901 ccctgcagcg ccattgcgcg gcgttcgcgc atggcggtgt caaaggcggc gttgatcgcc
      961 gcggccttgg cttccgccac ctcgatgaac tcggccggca gcccgcgccc gcgcgcccgg
     1021 tcggggtggg cctcggacag catggccctc caggcggccc gcacatcggc gtcgcaggcg
     1081 tcgtgggcca cgcccagcac cgcatagggg tcgccggcct ccaggccgag gtgagtcgcc
     1141 ttcagacggc ggaacatcag cgggctctgg ccgaacagct cggagacgcg ggcgaggtag
     1201 gcaagctcgt cgctggtcac caccccgtcc gaggtcgcca cgaagaagag gccgtccagc
     1261 acgtcctcga gaagctgcgg gcaggcccgg tagcgctttt ccaaccgccg cgcatagctc
     1321 tcgaagccgc gcgtcgtctg ccgggccagc tgatagagcc ggcgcacatt gccctcgctc
     1381 gcgggctcgg acatgaagac ctgggaaaag gcgtcgaatt cctcggcctg ggcgtggccg
     1441 tcggccttgg ccagcttcgc gccaagcgcg gtgaccgcgg tcgagaacgc ggggtcctcg
     1501 cccggaagac ccggagggca gacatcgcac tcggcctcat cgaggttgcg agcggccagt
     1561 ccagctatct tgcgccagaa gctcattggg ataagcagcc atacgagtgt ggccggccga
     1621 agacaatcac gggacgggtt aagttttgga caggtcctgg cgcttctgga tcgaccgcgg
     1681 gggcacgttc accgacgtca tcggccaggc cagtgacggc gccgagacct cgctgaagct
     1741 gctctccgcc tcgcccgcct atcccgacgc cgccgtggag gccatgcgcc gcatcctggg
     1801 gactgcgccg ggcgagccgt ttccggcgga ccgcgtcgag gccatcaaga tgggcaccac
     1861 ggtcgccacc aacgcccttc tggagcgcgc gggcgccaaa accctgttcg tgacgacgca
     1921 aggcttcgcc gattcggtgc tgatcggcga ccaggcccga cccgacctct tcgcgctgac
     1981 catcgttcgc cccgccccgc tctattccgg cgtggtcgag gccgacgagc ggctggacgc
     2041 agctggcgcg gtggtccgcc cgctcgacac cgcggccctg accgaaaagc tcaaggaagc
     2101 cgtcgcccaa ggctatgtct ccgccgccat cgccttcctg cacgccgacc tcaacccggc
     2161 ccacgagatt gcggccggcg agatcgcgaa ggctgtcgga ttctcattcg tcgcgctgag
     2221 ccatgaggtt tcacctctgc ccaggtttat tccgcgcgcc gagaccacca tcgccgacgc
     2281 ctacctgacc ccgatcctgc gggactacgt ccgccaggtg gctgacgcgg tggcaggtgc
     2341 gccgctgttc ttcatgacct cggccggtgg cctggtccgc gccgaggcgt tccgcggcaa
     2401 ggacgccgtg gtctcaggtc cggccggcgg cgtggtcggc gtggcgcgca cggcggccca
     2461 ggcgagcgcg ccagccgtcc tcggtttcga catgggcggc acctcaacgg atgtctgccg
     2521 ctacgccggc cagctcgaac gccgcgacac cgccaaggtg gccggcgcca agatcagaag
     2581 ccccatgctc gacgtcgaga ccgtggcggc cggcggcggc tcgatcctgg ccttcgacgg
     2641 catgcgcgcc cgagccggcc ccgccagcgc cggcgccaat ccgggcccgg cggcttacgg
     2701 ccgcggcggc ccggcc
//
LOCUS       DATAJL010000825         1986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85828,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000825 DATAJL010000000
VERSION     DATAJL010000825.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85828"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..254
                     /locus_tag="VHN39_15645"
     CDS             <1..254
                     /locus_tag="VHN39_15645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="ferredoxin--NADP reductase"
                     /protein_id="HEX2817826.1"
                     /translation="YYPTVTREPFRNQGRLPDLIANGKLCGDIGLAQIDPASDRAMIC
                     GGPAMLKDMRAVLDAAGFTISAGVGQAGDYVIERAFVEK"
     gene            389..>1986
                     /locus_tag="VHN39_15650"
     CDS             389..>1986
                     /locus_tag="VHN39_15650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817827.1"
                     /translation="MISVLRRLGACALLAVMAACGGGGSSSTDTTTHTVSVTVTGLRN
                     SYNGITLRNNGGDDLKLFGAATASFKTALATGSAYAVTVSSQPTGPDQTCTVTNGSGT
                     IAGSDVTNVAIDCPFPTAYAVGGTVTGLIGTGLDLQYNADNVSLPSIDQVNANGAFVF
                     DATRTSAVTGTVYGVSIANQPTNPAQTCVVLSGSGTVANTDVSGVNVACGTHTVSVTI
                     TGLRQHSARGIKLQNNGGDDLTRFIDGTYAFATPLAAGSAYSVTVLAQPQTPDQTCTV
                     SNGSGTIGSSDINNVVINCPYPPAYAVGGTITGMTGTGLDLTYFAPNLGVQLGTAAIT
                     NTGFVFAASDTSAINGTSFSISVRVQPINQTCFFTGPGAIAGTSFVSGTVGNADVTSL
                     NLTCGAVGSVLPCTAPTGAGTTHGSINAAETWTEAGSPHIIPFDINVSAPVTIQECAV
                     VRIVKGGTVTVTPTGSLVANGATGRPVTFEAKVAGQAWSSIRNLGGALSLNHAVLTGG
                     GDPLNTNPAFAGALHMQSPSLIGS"
BASE COUNT          352 a          746 c          600 g          288 t
ORIGIN      
        1 tctactaccc gacggtgacg cgcgagccgt ttcgcaacca gggccgcctc ccggacctga
       61 tcgccaacgg caagctgtgc ggcgacatcg gccttgcgca gatcgacccg gccagcgacc
      121 gggcgatgat ctgcggcgga ccggcgatgc tcaaggacat gcgcgccgtg ctcgacgcgg
      181 ccggcttcac gatctcggcc ggcgtcggcc aggccggcga ctacgtgatc gagcgcgcct
      241 tcgtcgagaa gtgacatgaa ggcgccgacg ccgccgtcag gtcatccgga gcgaagcgac
      301 ggatctttcc cgtcctccta acgccttcat aacgcctcgt ttcctacaac tgctccctac
      361 gcgggagttg tcccgaggga gcttggccat gatttcagtt cttcgacgct tgggcgcttg
      421 cgcgctcctc gcagtgatgg cggcctgcgg cggcggcggc agcagcagca ccgacaccac
      481 cacgcacacc gtgtcggtca ccgtgacggg ccttcgcaac tcgtacaacg gcatcacctt
      541 gcgcaacaac ggcggggacg atctcaagct cttcggcgcc gctacggcca gcttcaagac
      601 cgcgctggcc accggcagcg cctatgccgt gaccgtctcg tcgcagccca ccggccccga
      661 ccagacctgc acggtcacga acggcagcgg cacgatcgcc ggcagcgacg tgaccaacgt
      721 cgcgatcgat tgcccgttcc ccaccgccta tgcggtcggc ggaaccgtga cgggactcat
      781 cggcacgggg ctcgaccttc agtacaacgc cgacaacgtc agcctgcctt cgatcgatca
      841 ggtcaacgcc aacggcgcgt tcgtgttcga cgccacccgc acgagtgccg tcacaggcac
      901 ggtctacggc gtgtcgatcg ccaaccagcc caccaatccc gcgcagacct gcgtcgtcct
      961 cagcggcagc ggcacggtcg ccaacaccga cgtcagcggc gtcaacgtgg cctgcggaac
     1021 gcacaccgtc tcggtgacga tcaccggcct caggcagcac tcggcacgcg gaatcaagct
     1081 gcagaacaac ggcggcgacg acctgacccg cttcatcgat ggaacgtacg ccttcgccac
     1141 gccgctggcg gccggcagcg cgtacagcgt aaccgtcctg gcccagccgc agacccccga
     1201 ccagacctgc accgtcagca acggcagcgg cacgatcggc agcagcgaca tcaacaacgt
     1261 cgtgatcaac tgcccatacc cgcccgccta tgcagtcggc ggaacgatca ccggcatgac
     1321 cggcaccggc ctcgacctca cctacttcgc tcctaacctg ggtgtccagc tcggcaccgc
     1381 ggcgatcacc aacaccggct tcgtgttcgc ggccagcgac accagcgcga tcaacggcac
     1441 gagcttcagt atcagcgtgc gcgtccagcc gatcaatcag acctgcttct tcaccggccc
     1501 cggcgcgatc gcgggcacct cgttcgtgag cggcacggtc ggcaatgccg acgtgaccag
     1561 tctcaacctg acctgcggtg cggtcggctc ggtcctcccg tgcacggcgc cgaccggggc
     1621 cggcacgacc cacggcagca tcaatgcggc cgagacctgg accgaggcgg gcagcccgca
     1681 catcatcccc ttcgacatca acgtctcggc accggtgacg atccaggagt gcgcggtggt
     1741 gcgcatcgtc aagggcggca cggtcacggt cacgcccacg ggcagcctcg tcgccaacgg
     1801 cgctacggga aggccggtca cctttgaggc caaggtcgcc ggccaggcct ggtcgtcgat
     1861 ccgcaacctc ggcggcgccc tgtccttgaa ccacgccgtg ctcaccggcg gcggcgaccc
     1921 gctcaacacc aatccggcgt tcgccggtgc cctgcacatg cagagcccga gcctgatcgg
     1981 cagctt
//
LOCUS       DATAJL010000826         4680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_109687,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000826 DATAJL010000000
VERSION     DATAJL010000826.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4680
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109687"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..470)
                     /locus_tag="VHN39_15655"
     CDS             complement(102..470)
                     /locus_tag="VHN39_15655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HEX2817828.1"
                     /translation="MAAVIIGLAQIVWAAAAGSGGERDLAWLLGPRDEARPVSGVAAR
                     LSRALANFIETFPLFAVALLACDFAGKFGPLTYWGAMLYVVGRLLYVPIYAAGLSVVR
                     TLVWTVSMVGIVMVIVAFFQ"
     gene            complement(572..2032)
                     /gene="guaB"
                     /locus_tag="VHN39_15660"
     CDS             complement(572..2032)
                     /gene="guaB"
                     /locus_tag="VHN39_15660"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEX2817829.1"
                     /translation="MEIREGLTFDDVLLEPGPSDVMPTQVDVATRFTREINLNIPLVS
                     AAMDTVTESRLAIAMAQNGGLGILHRNLTVEEQADQVREVKRYESGMVINPLTIHPDT
                     PLSEIREIKARRKISGFPVVDDKGKLCGILTNRDMRFEGSEDVPAKSLMTHENLITVR
                     EGVSQAEARELLRKHKIERLIVVDDGYRAVGLITVKDMEKSEAHPNAAKDGQGRLLVG
                     AASTVGDAGWERSMALVDAGVDVVVIDTAHGHNADVAKAVGRIKRETNRVQIVAGNVA
                     TYDGARALIDAGADAVKVGIGPGSICTTRIVAGVGVPQLTAIADAVRAALGTDVPVIA
                     DGGIKYSGDLAKALAMGASVAMMGSVFAGVDEGPGEVFLYQGRSYKTYRGMGSLGAMS
                     RGSADRYFQKDVTDALKLVPEGIEGQVPYKGPIAPILHQMVGGLRAAMGYVGAANLVQ
                     FRERARFIRITGAGLRESHVHDVMITREAPNYPSAI"
     gene            complement(2116..2901)
                     /locus_tag="VHN39_15665"
     CDS             complement(2116..2901)
                     /locus_tag="VHN39_15665"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2817830.1"
                     /translation="MDPVNYDRVQHDVYAKGRALPPAAIQRYMDLFAQRLPARRPLTF
                     VDLGSGTGRFTPALAEAFGGPVHGVEPAAAMRRTAEAGVAHPRVSYLAGEGAAIPLPD
                     ASADAVLMFLSFHHFPDKPAAAREIARVVKPGGRVFLRSGFKERIPDHWWRSYFPRSW
                     EIEEAMFPSEAEACAVFEAAGFHTVEIAHLEIPFVGDIAEAVARLHLRAASTFEHMTE
                     AELDEGFTRLDAALAAGTIEEKPTFGDFIVFERRAGTPETTAP"
     gene            2982..3884
                     /locus_tag="VHN39_15670"
     CDS             2982..3884
                     /locus_tag="VHN39_15670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEX2817831.1"
                     /translation="MFENLTSSVLPSLNALRAFEAMARTGRATLAAEELNVTHSAVSR
                     QVKALEAALGVRLFQGPKHRLSLTPAGQELLPRLTRAFDEIAGAVRQLRSDGEDLHVA
                     VNASLSVKWLIPRLPDFAQRHPEIRLHLEELAPQATSHRGAEAVVRIAPAARLADPLV
                     TAFIQNHIGPVMRPSLARRFAADPLAAPRLTAQSHPQGWAIWAAVAGQELSPAPEQPF
                     PHMHFALDAALAGLGVAILSWPLVAEEIAEGRLVAPLGFRRAESAFALLAAPGAESRS
                     LAAFRKWLVAQGSRTPEPPVVGEG"
     gene            complement(4255..>4680)
                     /locus_tag="VHN39_15675"
     CDS             complement(4255..>4680)
                     /locus_tag="VHN39_15675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HEX2817832.1"
                     /translation="QVAIERGVTDIVGVDLLPVDPLPPAHILQMDFTDPECGPELIRL
                     LGGAPDVVLSDMAPNTVGHRQTDHLRIVGLIEAAVDFAVEVLKPGGVFIAKAFQGGET
                     ADVIATLKRHFASVKTVKPKASRSDSSELYLVATGFKGR"
BASE COUNT          757 a         1616 c         1558 g          749 t
ORIGIN      
        1 ccccaactct tcagcgccat ccggacaggc cggtggcgct catcgatctg ggtcaggaca
       61 tcaattgccg ccgctaggcg tccggcgtca cgcaagggac ctcactggaa gaaagccacg
      121 atcaccatga cgatgccgac catgctcaca gtccagacca gggtgcgaac gaccgacagg
      181 ccagctgcat agataggcac gtagagcagc cggcccacga catagagcat ggcgccccaa
      241 taggtcagcg gtccgaactt gccggcgaag tcgcaggcca gcagggccac ggcgaacagc
      301 ggaaaggtct cgatgaaatt ggcgagcgcg cgactgagcc tggccgccac cccgctcacg
      361 ggcctggcct catcgcgcgg ccccaacagc caggccaggt cacgctcccc gccgctgccg
      421 gccgccgcgg cccagacgat ctgcgcgaga ccgatgatca cggccgccat caagagtttc
      481 agttcaatcg gaaccattgc acccatagtc gcctcccccg ttgcgccgcc ggctcgggat
      541 cggccggccg gcgtagagac ttggccgacg cctagatggc gctcgggtag ttgggcgcct
      601 cgcgggtgat catcacgtcg tggacgtggc tctcccgaag gcccgcgccg gtgatccgga
      661 tgaaccgggc gcgttcgcgg aactggacga gattggccgc gcccacatag cccatggccg
      721 cgcgaaggcc gcccaccatc tggtgcagga tcggcgcgat cggtcccttg tagggcacct
      781 ggccctcgat gccctccggc accaacttca gggcgtcggt gacgtccttc tggaagtacc
      841 ggtcggcgga gccgcgcgac atggccccca gcgaacccat gccgcggtag gtcttgtagg
      901 accggccctg gtacaggaac acctcgcccg gcccttcgtc gacgccggcg aataccgagc
      961 ccatcatggc caccgaggcc cccatggcga gcgccttggc caggtcgccc gaatatttga
     1021 tcccgccgtc ggcgatcacc ggcacatcgg tgcccagggc ggcccgcacc gcgtcggcga
     1081 tggcggtcag ctgcggcacg cccacgcccg ccacgatccg cgtggtgcag attgagcccg
     1141 gcccgatgcc caccttcacg gcgtcggcgc cggcgtcgat cagggcccgg gccccgtcgt
     1201 aggtcgcgac attgccggcg acgatctgca cgcggttggt ctcgcgcttg attcgcccca
     1261 ccgccttggc gacgtcggcg ttgtggccgt gggcggtgtc gatcaccacc acgtcgaccc
     1321 cggcgtccac cagggccatg gagcgttccc agcccgcatc gcccactgtg gaggcggcgc
     1381 cgaccagcag gcggccctgc ccgtccttgg ccgcgttcgg atgggcctcc gacttttcca
     1441 tgtccttgac ggtgatcagg cccacggcgc ggtagccgtc gtcgaccacg atcaggcgct
     1501 cgatcttgtg tttgcgcaga agttcgcggg cttcggcctg actgacaccc tccctgaccg
     1561 taatcaggtt ctcatgcgtc atcagagact tggccggaac atcctcgctt ccctcgaagc
     1621 gcatgtcacg gttggtcagg atgccacaga gcttgccctt gtcgtcgacc accgggaacc
     1681 cggagatctt ccggcgggcc ttgatctcgc ggatctcgct gagcggcgtg tccgggtgga
     1741 tggtcagcgg attgatgacc atgccgctct cgtagcgctt cacctcgcgc acctggtcgg
     1801 cctgctcctc gacggtgagg ttgcggtgca ggatgccgag gccgccgttc tgggccatgg
     1861 cgatggccag ccggctttcg gtgacggtgt ccatggcggc ggacaccagc ggtatgttca
     1921 gattgatctc tcgcgtgaac cgggtcgcga catccacctg ggtgggcatc acgtcggacg
     1981 ggccgggttc tagcaaaaca tcgtcgaagg tgagcccttc gcgaatctcc atcggagtac
     2041 ctcgttttgc gggctggcta tacgcgtccg aggcctcaag gggcaagggg gccgaggacg
     2101 acgggtcgat caatctcatg gggcggtggt ctccggggtt ccggcgcggc gttcgaagac
     2161 gatgaagtcg ccgaaagtcg gcttctcctc gatcgtcccc gcggcgaggg ccgcatcgag
     2221 gcgggtgaag ccctcgtcga gttcagcctc cgtcatgtgt tcaaaagtgg aagccgctcg
     2281 caggtggagg cgcgcgacgg cttcggcgat gtcgcccacg aaggggatct ccagatgcgc
     2341 gatctcgaca gtgtggaacc cggccgcctc gaagacggcg caggcctcag cctcggaggg
     2401 aaacatcgcc tcctcgatct cccaactgcg ggggaagtag ctgcgccacc agtggtcggg
     2461 aatgcgttcc ttgaagccgc tgcgcaggaa gacccggccg ccgggcttca caacgcgggc
     2521 gatctcgcgc gcggcggcgg gcttgtccgg gaagtggtgg aacgacagga acatcaggac
     2581 ggcgtcggcg ctggcgtcgg gcagggggat cgcggcgccc tcaccggcca gatagctgac
     2641 ccggggatga gccaccccgg cctcggcggt ccggcgcatc gccgcagccg gttcgacgcc
     2701 atggacggga ccgccgaagg cctcggccag cgccggcgtg aagcgccccg tgccggagcc
     2761 cagatcgaca aatgtgagcg gccgccgcgc cggcagtcgc tgggcgaaga ggtccatgta
     2821 gcgctggatc gccgccggcg gcagggcgcg gcccttggcg tagacgtcat gctggacgcg
     2881 atcgtagttg actgggtcca cgggtgtctg gggatgttga tgtgccatgg cggtgtctac
     2941 gcctgttgcc tatgcgcgga aatcgacata ttcgatgcat gatgttcgaa aatctcacat
     3001 caagcgtcct gccctcgctg aatgcgctgc gggccttcga ggccatggcg cggaccggcc
     3061 gcgcgaccct ggccgccgag gagctgaacg tcacccacag cgccgtcagc cggcaggtga
     3121 aggcgctgga ggccgccctc ggcgtgcgcc tgttccaggg cccgaagcat cggctgagcc
     3181 tcacgccggc gggccaggaa ctgctccccc gcctgacccg cgctttcgac gagatcgccg
     3241 gagccgtgcg ccagctgcgc agcgacggcg aggacctgca tgtggcggtc aacgccagcc
     3301 tgtcggtgaa gtggctgatc ccccgcctgc ccgacttcgc ccagcgccac ccggagatcc
     3361 gcctgcacct ggaggaactg gcccctcagg cgacctcgca ccgcggcgcc gaggcggtgg
     3421 tccggatcgc gcccgccgcg cgcctggcgg atcccctggt cacggcgttt atccagaacc
     3481 acatcggccc ggtcatgcgg ccgtcgctcg ccaggcgctt tgccgccgat ccactggccg
     3541 caccgcgcct gaccgcccaa tcccacccgc agggctgggc gatctgggcc gctgtggccg
     3601 gccaggagct ctcgcccgca cccgaacagc cattcccgca catgcacttc gccctggacg
     3661 ccgcgctggc gggcctgggc gtcgcgatcc tctcctggcc cctcgtcgcc gaggagatcg
     3721 ccgagggccg gctggtcgcg ccattgggct tccgccgcgc ggaaagcgcc tttgccctcc
     3781 tggccgcgcc gggcgccgag agccgctcgc tcgcggcgtt ccgcaaatgg ctggtggcgc
     3841 agggttcgcg cacaccggag ccgcctgtgg tcggtgaggg ctagtcgatc acgcgcacca
     3901 gacctggact ggcgtccgcc cgacatggcg ccgcgtctag gtaaaatcgc cgaccccata
     3961 ggtgtcgctg gccgcgcacc gcgatctgat cgcccactgc gcatcctctg atggaaaagg
     4021 ctcggacaaa gacctttcgc ccagacaaaa caacggtcgt gttcagagag ttgccgaatt
     4081 tgctgtggct caccgaaata ctggaaacct gcccctgaaa gacttcgggc gacccaaggg
     4141 ggatccatac aaaaaccgtc aacagcacgc ctaatatcgt gaggacgata agtaccggga
     4201 gaaggggatg cacagcggcc cacctctccc attgcgctga aatgcggctt tcgctcaccg
     4261 ccccttgaac cccgtcgcca ccagatagag ctccgagcta tccgaccggc tggccttggg
     4321 tttgaccgtc ttcacgctgg cgaagtggcg tttcagcgtg gcgatgacgt cggcggtctc
     4381 gccgccctgg aaagccttgg cgatgaacac gccgccgggc ttcagcactt cgacggcgaa
     4441 gtccacggcg gcctcgatca atcccacgat gcgcaggtgg tcggtctggc ggtggcccac
     4501 ggtgttgggg gccatgtccg acagcaccac gtccggcgcc ccgcccagga ggcggatcag
     4561 ctccggtccg cattccgggt cggtgaagtc catctgcagg atgtgggcgg gcggcagagg
     4621 atcgacgggc agcaggtcga cgccaacgat atcggtcacc ccgcgctcga tcgccacctg
//
LOCUS       DATAJL010000827         2717 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98679,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000827 DATAJL010000000
VERSION     DATAJL010000827.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98679"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VHN39_15680"
     CDS             <1..186
                     /locus_tag="VHN39_15680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="kynureninase"
                     /protein_id="HEX2817833.1"
                     /translation="VQAMMARGVVGDFRAPDIARFGFSPLFLSYAEVWDAAHALADIL
                     ATRAWDRPEFRVRAAVT"
     gene            351..2084
                     /locus_tag="VHN39_15685"
     CDS             351..2084
                     /locus_tag="VHN39_15685"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2817834.1"
                     /translation="MQLNRNRVMQAVAVGMAILMGVTVFPWPLVLGWAIVAITVGAGA
                     DHAQRIGDGVGRFAAPAKRAMPALRLLTSATFAIAVFGLFVRGGPNERLFAYALMTAS
                     MVFVLMRYYRSPLIFMVSMAPYVLVLLAVAGALGREEWAQGQFLSAACAGFPLVIFGT
                     VFWSARAQLGTAWNELMAARQAAEDREHAADSANRAKSDFLATMSHELRTPLNGVLGM
                     VQALTTERLTQVQHDRVTIIRRSSESLLAVLNDLLDLSKIEASALELEVAEFDLEHLV
                     RGVVAAYQPVAGRKGLAFNLDIDERARGRYDGDSARIRRILYSLADNAVKFTERGAVT
                     LSVARETGVVVFRVADTGIGIAPDDLAHLFEGFYQVDASRTRRYGGAGLGLAICHELS
                     QLMGGAIEAASEPGQGATFVLRLPLSSAVTQPEPSRGAEPTREATAPGQIRVLAAEDN
                     ETNQLVLKTLLGQAGIVPTIVDNGRQALEAWETQAWDVILMDIQMPIMDGVAATRAIR
                     LREAETGRARTPIIAVTANAMTHQVAEYEAAGMDSMAPKPIDIAALLAAMERALEPDY
                     AEAPAQAAAAD"
     gene            complement(2162..2251)
                     /locus_tag="VHN39_15690"
     tRNA            complement(2162..2251)
                     /locus_tag="VHN39_15690"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2215..2217),aa:Ser,seq:gct)
     gene            complement(2358..>2717)
                     /locus_tag="VHN39_15695"
     CDS             complement(2358..>2717)
                     /locus_tag="VHN39_15695"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="PEP-CTERM proteins occur, often in large numbers,
                     in the proteomes of bacteria that also encode an
                     exosortase, a predicted intramembrane cysteine proteinase.
                     The presence of a PEP-CTERM domain at a protein's
                     C-terminus predicts cleavage within the sorting domain,
                     followed by covalent anchoring to some some component of
                     the (usually Gram-negative) cell surface. Many PEP-CTERM
                     proteins exhibit an unusual sequence composition that
                     includes large numbers of potential glycosylation sites.
                     Expression of one such protein has been shown restore the
                     ability of a bacterium to form floc, a type of biofilm;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0031240 - external side of cell outer
                     membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX2817835.1"
                     /translation="FQDPNATLGNVGTVFEDINNHGLVSGEWNDADGNSHAFEFNSLT
                     HAFTDITVAGATSSEAFGLNDSGNVVITTNLTGGPNNFEFNAAGGVPEPAAWGLMLVG
                     FFGLGSVLRRRRTALAV"
BASE COUNT          415 a          923 c          913 g          466 t
ORIGIN      
        1 gtccaggcca tgatggcgcg cggcgtggtc ggtgacttcc gcgcgcccga tatcgcccgc
       61 ttcggcttct cgccgctgtt cctcagttac gccgaggtct gggacgccgc ccacgcgctc
      121 gccgacatcc tggcgacccg cgcctgggat cggccggagt ttcgcgttcg cgccgcggtg
      181 acctgacgag gcgcccggct cggcgcgccg cccctgcacg acgccgtaac gttgcgtcag
      241 ccttttgctg tcaatcttga tcgcgacagg agtgctaagt gcaaatttcc ccagcggcaa
      301 cgattgcgtc tgccggggag cacgcctacg cgcccgccga tttcttctcc atgcaactca
      361 atcgcaaccg cgtcatgcag gctgtcgccg tcggcatggc catattgatg ggtgtcaccg
      421 tcttcccatg gccgcttgtc ctgggctggg cgatcgtggc gatcacggtg ggcgcggggg
      481 cggaccacgc tcagcgcatc ggcgacggcg ttggccgttt cgcggcgccg gcgaaacgcg
      541 cgatgcctgc gctgcgtctg ctcacctcgg ccaccttcgc gattgcggtc ttcggcctct
      601 ttgtgcgtgg aggtccgaac gagcgcctgt tcgcctacgc gctgatgacg gcctccatgg
      661 tctttgtgct gatgcgctac taccggtcgc cgctgatctt catggtgagc atggcgccct
      721 acgtgctggt gttactggcg gtcgccggcg cattggggcg tgaagaatgg gcgcagggac
      781 agtttctgag cgcggcttgc gcgggcttcc cgctggtgat cttcgggacg gtattctggt
      841 cagcgcgggc gcagctcggc acggcctgga acgagttgat ggccgcgagg caggccgccg
      901 aggaccgcga acatgccgcc gactccgcca accgcgcgaa gtccgatttc ctggccacca
      961 tgagccacga gctgcgtacg cccctgaacg gggtcctggg catggtccaa gccctcacca
     1021 ccgagcgcct gacccaggtg cagcacgatc gggtaacgat catccgtcgc tcgagcgaaa
     1081 gcctgctggc tgtgctgaac gaccttctgg acctctccaa gatcgaagcc tccgcgctgg
     1141 agctggaggt ggccgagttc gacctggagc acctggtgcg cggcgtggtc gccgcctacc
     1201 agccggtggc cggcaggaag ggcctcgcct tcaacctcga catcgacgag cgcgcgcgcg
     1261 gccgctacga cggcgacagc gcccgcatcc ggcgcatcct ctacagcctg gccgacaatg
     1321 cggtgaaatt caccgagcgt ggcgcggtga cccttagcgt cgcccgcgaa accggggtcg
     1381 tggtgttccg cgtggccgac accggcatcg gcatcgcgcc tgacgatctg gcgcatctgt
     1441 tcgaaggctt ctaccaggtc gacgccagtc gcacccgccg ctatggcggg gccggcctgg
     1501 gcctggcgat ctgtcacgag ctcagccagc tgatgggcgg ggcgatcgag gctgccagcg
     1561 agccgggcca gggcgcgacc ttcgtccttc gcctgccgct ctcgtccgcg gtgacccagc
     1621 ccgagcccag ccgcggcgcc gagccgaccc gcgaggcgac cgcgcccggc cagatccgcg
     1681 ttctggccgc cgaggacaac gagaccaacc agctggtcct gaagaccctg ctcggccagg
     1741 ccgggatcgt gccgaccatt gtcgacaacg gccgccaggc gctggaggcc tgggagaccc
     1801 aggcctggga cgtgatcctg atggacatcc agatgccgat catggacggg gtcgccgcga
     1861 cccgggccat ccggctgcgc gaggccgaga ccggccgggc gcggacgccg atcatcgcgg
     1921 tcaccgccaa cgccatgacc catcaggtgg cggagtacga ggccgccggc atggactcca
     1981 tggcgcccaa gccgatcgac atcgccgccc tgctcgcggc catggagcgg gccctggagc
     2041 cggactatgc ggaagcgccg gcccaggcgg cggccgcgga ctgaacggcc ctatttctca
     2101 aagggctgct tctcgcggac ctctcagcca atcctgcgaa gcgcatttgc gcgacgcagg
     2161 ttggcggtga cgcagggatt cgaaccctgg ataccctttc gggtatgacg atttagcaaa
     2221 ccgttgcctt cagccactcg gccacgtcac cttgttgaaa acactgggat tttttccggc
     2281 gtcgtcagcc gacggcgagc catgcgaaac aggcccgcgc cgggatcgcg gtttctagcc
     2341 gacgatgaag gttctgccta gaccgccaag gcggtccggc ggcggcgaag caccgatccg
     2401 aggccgaaaa agcccaccag catcaggccc cacgccgccg gttccgggac gccgccggcc
     2461 gcattgaact cgaagttgtt cggcccgccg gtcaggttgg tcgtgatgac gacgttgccc
     2521 gagtcgttga ggccaaacgc ctcgctgctg gtggcgccgg cgacggtgat gtcggtgaag
     2581 gcatgcgtca ggctgttgaa ctcgaaagcg tggctattgc catcggcgtc gttccattcg
     2641 cccgagacga ggccgtggtt gttgatgtcc tcgaacaccg tgccgacgtt tccgagggtc
     2701 gcgttcggat cctggaa
//
LOCUS       DATAJL010000828         2757 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85867,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000828 DATAJL010000000
VERSION     DATAJL010000828.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2757)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2757)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2757
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85867"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..105)
                     /locus_tag="VHN39_15700"
     CDS             complement(<1..105)
                     /locus_tag="VHN39_15700"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX2817836.1"
                     /translation="MPLHAGLRSGFAMKVAFAGLGVMGFPMAGHLAKAG"
     gene            162..1064
                     /locus_tag="VHN39_15705"
     CDS             162..1064
                     /locus_tag="VHN39_15705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEX2817837.1"
                     /translation="MSVSGERPIIIKRIKKGGGAGHHGGAWKVAYADFVTAMMAFFLL
                     MWLINTTSPEQKRGIADYFAPASVSETTSGAGGILAGTALGNDGAKQNGSQSMVQDAS
                     PDARHPNDGKAKDAAKGADPTSEQLREAQQRKEAAAFASAAQSLRQALQDMPELAELS
                     KNIIIDQTPEGLRIQLVDQEGRSMFNTGTAVPNDRAKLLLRAIAKIINQLPNRISIYG
                     HTSASAGQGGKAEGDWPLSQGRADASRKILQSAGVDVDRVYQVSGKATSEPLYPDDPT
                     LPGNRRIAIVLLREAPVLPPDRGP"
     gene            1155..1919
                     /locus_tag="VHN39_15710"
     CDS             1155..1919
                     /locus_tag="VHN39_15710"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003168125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004057 - arginyl-tRNA--protein
                     transferase activity [Evidence IEA];
                     GO_process: GO:0016598 - protein arginylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEX2817838.1"
                     /translation="MTQHFPSRQLRFFLTAPSPCPYLPERYERKVFAHLPLSEGASVN
                     DSLTQVGFRRSQNIAYRPACEACTACISARIPAADYVFARSERKAIARNEDLERHLVE
                     AEATMEQFDLLRRYLTTRHADGGMAEMTWPDYVAMVEDTAVRTHIIEYRTRAQNGPGD
                     LVACALVDVMSDGLSLVYSFYDPGQNRRSLGSFVILDHVIQACLTSLPYVYLGYWVRG
                     SEKMDYKVRFSPIELLKPEGWTLVVGGAAKAANDTL"
     gene            1930..2604
                     /locus_tag="VHN39_15715"
     CDS             1930..2604
                     /locus_tag="VHN39_15715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018061098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator DnaA"
                     /protein_id="HEX2817839.1"
                     /translation="MAKQLRLGLRRPAAHTRDSFVHGASNAQAVAALDAWPRWPGGTL
                     VLTGPEGVGKTHLARVWAIGAKALVLDREAPDIARAPGRPALLEDVDQGIDAEALFHL
                     INLAAHDGASLLLTARKAPSTWPADLPDLRSRLNALMVAEIEAPDDTVLCGVLKTFFR
                     ERNIRPHDDVYPYLLRRMERSVPGAREIVRRLDETEDGETRPVSRVLARQILEADIEN
                     LDLFEG"
BASE COUNT          491 a          997 c          850 g          419 t
ORIGIN      
        1 gccggccttg gccagatggc ccgccatcgg gaagcccatc acgccgagac cggcgaacgc
       61 caccttcatc gcaaatccgc tccttaaccc tgcgtgcaac ggcatcttaa cgggagcctg
      121 cgcacttgag tccctcgtaa caggctagac cggggcggac catgtcggtg agcggcgaac
      181 ggccgatcat catcaagcgc atcaagaagg gcggtggcgc cggccaccat ggtggcgcgt
      241 ggaaagtcgc gtacgccgac ttcgtgaccg cgatgatggc gttcttcctc ctgatgtggc
      301 tgatcaatac gaccagccct gagcagaagc gcggcatcgc cgactatttc gccccggcca
      361 gcgtatcgga gaccacctcc ggcgccggcg gcatcctggc gggcacggcg cttggcaatg
      421 acggggccaa gcagaacggc tcccagtcca tggtccagga cgccagcccc gacgcgcgcc
      481 accccaacga cggcaaagcc aaggacgccg ccaagggcgc cgaccccacc tccgaacagc
      541 tcagggaagc ccagcagcgg aaggaagccg ccgcgtttgc gtccgccgcg cagtcgctcc
      601 gccaggcgtt gcaggacatg ccggagctgg ccgagctctc caagaacatc atcatcgacc
      661 aaacgcccga gggcctgcgc atccagctcg tggaccagga gggccgctcg atgttcaaca
      721 ccggcaccgc cgtgcccaac gaccgcgcca aactgctgtt gcgggcaatc gccaagatca
      781 tcaaccaact gcccaaccgg atcagcatct acggccacac cagcgccagc gccggccagg
      841 gcggcaaggc cgagggcgac tggccgttga gccaaggccg cgccgacgcc tcgcgcaaga
      901 tcctgcaaag cgccggcgtc gacgtcgacc gggtctatca ggtctccggc aaggccacct
      961 cggagccgct ctatccggac gatccgacac tgcctggcaa ccgccgcatc gccatcgtgc
     1021 tgttgcgtga ggcgcccgtg ctgccgccgg accgcggccc atagtccacc ctcaggcgac
     1081 agcccttgcg ccgcggcgcg gcatgacgcc taatccaggc caaggcgacc ccgcatgaag
     1141 gcgactgaaa gtccgtgacg cagcattttc cgtcccgaca gctcaggttc ttcctgaccg
     1201 ccccgtcgcc atgcccctac cttcccgaac gctatgagcg gaaagtgttc gcccacctgc
     1261 cgctcagcga gggcgccagc gtcaacgaca gcctgaccca ggtcggtttc cgccgttcgc
     1321 agaacatcgc ctaccgcccg gcctgtgagg cctgcacggc ctgcatctcc gcccggatcc
     1381 cggccgccga ctacgtcttc gcccgatctg agaggaaggc gatcgcccgc aacgaggatc
     1441 tggagcgcca ccttgtcgag gccgaggcca ccatggagca gttcgacctg ctccgccggt
     1501 atctgaccac ccgccacgcc gacggcggca tggcggagat gacctggccc gactacgtgg
     1561 ccatggtcga ggacaccgcc gtccgcaccc acatcatcga ataccgcacc cgcgcccaga
     1621 acggcccggg cgacctggtg gcctgcgccc tggtggacgt gatgagcgac gggctgtcgc
     1681 tggtctacag cttctacgac cccggccaga accggcggtc gctgggctcc ttcgtgatcc
     1741 tcgaccacgt catccaggcc tgcctgacca gcctgcccta cgtctatctg ggctactggg
     1801 tgcgcggctc ggagaagatg gactacaagg tccgcttctc gccgatcgaa ctgctgaagc
     1861 ccgaaggctg gaccttggtg gtcggcggtg cggccaaggc ggcgaacgac acgctctaga
     1921 aagaccttga tggccaaaca gcttcggctg ggccttcgca ggcccgccgc ccatacccgc
     1981 gacagctttg tgcacggcgc ctccaacgcc caggccgtgg ccgcgctcga cgcctggccg
     2041 cggtggcctg gcgggaccct ggtgctgaca ggccccgaag gcgtcggaaa gacccacctt
     2101 gcgcgggtct gggccatcgg cgccaaggcc cttgtcctcg accgtgaggc gccggacatc
     2161 gccagggccc ctggccgacc ggccctgctg gaggatgtcg atcagggcat tgacgccgag
     2221 gccctgttcc acctgatcaa cttggccgcc cacgacgggg cgagcctgtt gctgacggcg
     2281 cggaaagccc cttcaacctg gcctgccgac cttccggacc tgcgctcgcg gctgaacgcc
     2341 ctgatggtgg ccgagatcga ggcgcccgac gacacagtgc tctgcggtgt cctcaagact
     2401 ttcttccgtg aacggaacat tcgtccgcac gacgatgttt atccctacct cctgcggcgc
     2461 atggaaaggt cggttcctgg cgctcgcgag atcgtgcggc gcctcgatga gaccgaagac
     2521 ggcgaaaccc ggcctgtttc acgcgtattg gcccggcaga tccttgaggc cgatatcgaa
     2581 aatcttgacc ttttcgaggg atgacttgaa ggcgtcacgc tgagggctca aaatctcgcg
     2641 gcccttacct gccttggaga ccctgtagat gagcctcgcc gagcccatcg ccgcccatgc
     2701 tgcgaatgag gccctgcgcg cgccgctcgc ctgggacgag acgttggcga cctcgcc
//
LOCUS       DATAJL010000829         6704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_72241,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000829 DATAJL010000000
VERSION     DATAJL010000829.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6704
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72241"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VHN39_15720"
     CDS             complement(<1..262)
                     /locus_tag="VHN39_15720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6065 family protein"
                     /protein_id="HEX2817840.1"
                     /translation="MQLECFTTVADPPELAPGRPDRPWMDAFGGRTPYRCLPLTMANT
                     TGWEILCPFGFTAEWNGGASGMMVMSLVAAPPFHSAVKPKGQR"
     gene            388..1608
                     /locus_tag="VHN39_15725"
     CDS             388..1608
                     /locus_tag="VHN39_15725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="parallel beta-helix domain-containing protein"
                     /protein_id="HEX2817841.1"
                     /translation="MKTLLISACAAGALLAGQAQAKVLTVTPGGDVQEKLQTALLDAK
                     PGDTVSIAAGRYELTDGLSLDVAGVTVKGAGPAATILSFDGQKSSGEGFLITSNRVTI
                     RDLGVENCKGDGIKSKGADQITFKNLRVEWTAGPKSTNGAYGVYPVASTNVLIDGVVV
                     KGASDAGIYVGQSKNIIVRNSEAQFNVAGIEIENSMNADVHDNLATHNAGGILVFDLP
                     NLPQMGGHSTRVFRNKVVQNDTQNFAKKGAVVGDVPTGTGVMVMANRDIHVFENEIDQ
                     NQTAAVMVVSYTQNYDDLTYNPLPRDIAVHDNKIGKNGWAPQFPGGDVIAKAMGGTIP
                     PVVWDGVTNFTPKGMSAPVVVHVHFTDGPVANLHFAAPGNVFSAKPQVTPTLDDGAIA
                     EPKPVVLPKAQAGL"
     gene            1701..2687
                     /locus_tag="VHN39_15730"
     CDS             1701..2687
                     /locus_tag="VHN39_15730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SO2930 family diheme c-type cytochrome"
                     /protein_id="HEX2817842.1"
                     /translation="MSATPAPTLAAYRLFTDEGAHHPSAGVTPYALNTPLFSDYAEKS
                     RFLYLPPGAHAAYRAQGALDLPVGATLIKTFAYPADFRRPDEKVRVLETRLLIHRRSG
                     WVALAYVWNGEQTEAVLKRAGKRIDVSFIDTHGQARTVDYKVPNANQCKECHSLSGHI
                     APIGVKARNFNGVFAYAEGPENQLAHWTRTGLLTGAPSPDKAPRTAIWDAPSEPLELR
                     ARAYLDANCGHCHNARGIASNTGLFLNLEEARPAKIGLNKRPVAAGKGSGDLEIDLVP
                     GHPDASIIAYRMASTDPGVMMPELGRSLVHDEGLAVVRDYIAKMQKPSAARP"
     gene            2819..3451
                     /locus_tag="VHN39_15735"
     CDS             2819..3451
                     /locus_tag="VHN39_15735"
                     /inference="COORDINATES: protein motif:HMM:NF016176.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HEX2817843.1"
                     /translation="MFRTPNLKIVALGFAATLLISTAGAAQAQMVTAPAATQAGTYKL
                     DPAHGKITWSITHFGFSTYIGQFAHVDATLKVDPKALGATTLDVTVDNNSLGTLNAAL
                     DTHLKSKDFLDVAAFPTATFHATKVTSTGERTADIAGELTLHGVTKPVVVHATFMQGG
                     INPLDKKYELGFAGSAEILRSDFGIKAYLPAISDKVTLTMEAEFKAAPAA"
     gene            complement(3464..4699)
                     /locus_tag="VHN39_15740"
     CDS             complement(3464..4699)
                     /locus_tag="VHN39_15740"
                     /inference="COORDINATES: protein motif:HMM:NF012656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2817844.1"
                     /translation="MSIDFEIPPEAKAVRERVRQWVKDECIPAEARIKDKASYKSVLA
                     ELRTKARAQGLWLPFVPTEYGGMGLGPLANALVQMELGQSHLGALSMNSQGPDDATIL
                     TLLAHGTDFQKEKFLKPLLNGEKRVCYSMTEKASGADATGMRTSAVKDGNENYVLNGE
                     KWFSSAASAADLALVMARTDPDAPRHQQFSTFIVELPNPGYKIKRDIPTMAVHGPLAE
                     VMGGGHAEIEIKDLVVPAENLLGGEGRGFDMGQHRLAYGRLRHGMHNVAMAQRALDMA
                     TARVTDRETFGRKLSDRQAVQFMLAECATQLYISRLMLLHIAYKAEKGMDMRQENSIA
                     KVYLAHMVHHVVDTAIQLHGALGYSLDTPLAGWYTHIRSQRLVDGPDEVHRWTVGRNV
                     IKAFQKDGTTAMAAGGDLL"
     gene            complement(4782..5000)
                     /locus_tag="VHN39_15745"
     CDS             complement(4782..5000)
                     /locus_tag="VHN39_15745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817845.1"
                     /translation="MTDKSKNPSSQIQGEGNYDAARKFDGEERAFVKKGGIEQKAKEA
                     EQALDGAEGVDLEKARKETGERGQMGER"
     gene            5187..5603
                     /locus_tag="VHN39_15750"
     CDS             5187..5603
                     /locus_tag="VHN39_15750"
                     /inference="COORDINATES: protein motif:HMM:NF014912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubrerythrin family protein"
                     /protein_id="HEX2817846.1"
                     /translation="MSLATSKTLDNLKAAFAGESQANRRYLYFAQKADVEGYNDVAAV
                     FRSTAEGETGHAHGHLEFMEAVGDPATGLPIGGTSLNLKAAIAGETHEYTDMYPGMAR
                     TAREESFDEIADWFETLAKAEKSHAGRFQRALDTLD"
     gene            5666..>6704
                     /locus_tag="VHN39_15755"
     CDS             5666..>6704
                     /locus_tag="VHN39_15755"
                     /inference="COORDINATES: protein motif:HMM:NF014774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heterodisulfide reductase-related iron-sulfur
                     binding cluster"
                     /protein_id="HEX2817847.1"
                     /translation="MSDSKTDSAGGPPREGSLDAPFRHPIAWRDETYYDLEKVEAEMT
                     RQFDVCHTCRRCFNLCDSFPRLFDLIDESKTGELDSVPASDYAKVDEACTLCDMCFLT
                     KCPYVPPHPFDIDIPHLILRYRAAKRKAGAREFVREQLGQTDRNGKLAKPFAGVVNAM
                     SARKNTPLRKLLEAIAQIDAEVELPKYYSKTATDRLKNPLAPNPAGPAFGQRKVALYA
                     TCFVDYNEPDTAVAAARVLALQGVEVKLVYPECCGMPQLEAGDLKDVADRAGRVATVF
                     APLIADGFDVVALTASCGLMMKFEWPLIEPENKAVVALSAATKDICEYVVELQKTYGL
                     AEGLAPVEGGIT"
BASE COUNT         1172 a         2331 c         2153 g         1048 t
ORIGIN      
        1 tcctctgccc cttcggcttc accgccgagt ggaacggcgg cgcggccacc agcgacatca
       61 ccatcatccc cgacgcgccg ccgttccact cggcggtgaa gccgaagggg cagaggatct
      121 cccagccggt ggtgttggcc atggtcagcg gcaggcagcg gtagggggtg cgcccgccga
      181 aggcgtccat ccacggccgg tcgggccgcc cgggcgccag ctccggcgga tcggccacgg
      241 tggtgaagca ctcgagctgc atggggcgac cttaccccgg acggcgcgcg ccgtggcaag
      301 ggccattgac taccgcaggg ggactagggc gccatagagg ctcgaacggc gcgccatgac
      361 gccggaagca ttgcgaggac cacgcgcatg aagaccctgc tgatctccgc ctgcgccgca
      421 ggcgccctgc tggccggcca ggcccaggcc aaggtgctga ccgtcacgcc gggcggcgat
      481 gtgcaggaaa agctgcagac cgccctgctg gacgccaagc ccggcgacac cgtctccatc
      541 gccgcggggc gctatgagct gaccgacggc ctgtcgctgg atgtggcggg cgtgacggtg
      601 aagggcgcgg ggccggcggc gacgattctc tccttcgacg gccagaagag ctccggcgaa
      661 ggcttcctga tcacctcaaa ccgcgtgacc attcgcgacc tgggcgtcga gaactgcaag
      721 ggcgacggga tcaagtccaa gggcgccgac cagatcacct tcaagaacct gcgcgtggaa
      781 tggaccgcgg gacccaagtc caccaacggc gcctatgggg tctatccggt ggcctccacc
      841 aacgtcctga tcgatggcgt ggtggtgaag ggcgcctcgg acgctggcat ctatgtgggc
      901 cagtccaaga acatcatcgt gcgcaacagc gaagcccagt tcaacgtggc cggcatcgag
      961 atcgagaact cgatgaacgc cgacgtccac gacaacctcg ccacccacaa cgccggcggc
     1021 atcctggtct tcgacctgcc gaacctgccg cagatgggcg gccactccac tcgcgtcttc
     1081 cgcaacaagg tcgtgcagaa cgacacccag aatttcgcca agaagggcgc ggtcgtcggc
     1141 gacgtgccga ccggcacggg cgtcatggtg atggccaacc gcgacatcca cgtcttcgaa
     1201 aacgaaatcg accagaatca gaccgcggcg gtcatggtgg tcagctacac ccagaactac
     1261 gacgacctga cctacaaccc cctgccgcgc gacatcgccg tgcatgacaa caagatcggc
     1321 aaaaacggct gggcgccgca gttccccggc ggcgacgtga tcgccaaggc catgggcggg
     1381 accatcccgc cggtggtctg ggacggggtc accaacttca cgcccaaggg catgagcgcg
     1441 ccggtggtgg tgcacgtcca cttcaccgac gggccggtcg ccaacctgca cttcgccgcg
     1501 cccggcaatg tgttcagcgc caagccgcag gtgacgccca ccctcgacga cggcgcgatc
     1561 gccgaaccga aaccggttgt cctgcccaag gcgcaagccg gcctatgagg cgagccctcg
     1621 ccgcgctggc cgcggtcctt tgcctgggcg ccgcgccagc gccgacgcca aatggccggg
     1681 acgtggagct aggcgcgctg atgtccgcga cgccggcccc gacgctggcc gcctatcgtc
     1741 tgttcacgga cgagggcgcg catcacccga gcgccggcgt cacgccgtac gcgctgaaca
     1801 cgccactgtt cagcgactac gccgagaagt cccgcttcct ctacctgccg ccgggggccc
     1861 acgcggccta tagggcgcag ggcgcgctcg acctcccggt gggcgcgacg ctcatcaaga
     1921 ccttcgctta ccccgccgat ttccggcggc cggacgaaaa ggtgagggtg ctggagacgc
     1981 gcctgctgat ccaccgccgc tcgggttggg tggcgctggc ctatgtctgg aacggcgagc
     2041 agacggaggc ggtgctcaag cgggctggca agcgcatcga cgtcagcttc atcgacaccc
     2101 acggccaggc gcggacggtc gactacaagg tccccaacgc caaccagtgc aaggaatgcc
     2161 attctctctc gggccacatc gcgccgatcg gggtgaaagc gcgcaacttc aacggcgtct
     2221 tcgcctatgc ggagggaccg gagaaccaac tcgcgcactg gacgcggacc ggcctcctga
     2281 ccggcgcgcc cagccccgac aaggctccgc gcaccgcgat ctgggacgcg ccctcggagc
     2341 ccttggaact ccgggcgcgc gcctacctcg acgccaactg cggccactgc cacaacgccc
     2401 gcggcatcgc ctccaacacc ggcctcttcc tcaatctgga ggaggcgcgg cccgcgaaga
     2461 tcggcctgaa caaacgcccg gttgccgcag gcaagggctc cggcgacctg gagatcgacc
     2521 tcgtccctgg tcatcccgac gcctcgatca tcgcctaccg catggcctcg accgatcccg
     2581 gcgtgatgat gccggaactg ggccggtcgc tggtgcacga cgagggcctg gctgtggtcc
     2641 gggactacat cgcgaagatg cagaagccgt cagccgctcg cccataattt ccgatatgga
     2701 atgagtgttg ggccgcgacg cgcgattaac attcgcgccg atcgggctac cttggcgtca
     2761 acgcggtcgc tgaggcggcc tcgtgaccca ttcgtcgctc cattagaagg ctcaccccat
     2821 gttcagaacc cccaacctca agattgtcgc cctcggcttc gccgccacgc tcctcatctc
     2881 caccgccgga gccgcccagg cccagatggt caccgcgccc gccgcgaccc aggccgggac
     2941 ctacaagctc gaccccgcac acgggaagat cacctggtcg atcactcact tcggcttttc
     3001 cacctacatc ggccagttcg cccatgtgga cgcgaccctg aaggtcgatc ccaaggcgct
     3061 gggcgccacc acgctggacg ttaccgtcga caacaattcc ctgggcacgc tgaacgcggc
     3121 gctcgacacc catctgaagt cgaaggactt cctggacgtg gcggcgtttc cgaccgcgac
     3181 cttccacgcc accaaggtca cctcgaccgg cgagaggacc gccgatatcg cgggcgagct
     3241 gacactgcac ggcgtgacca agccggtggt ggtgcacgcg accttcatgc agggcgggat
     3301 caacccgctc gacaagaagt acgagctggg tttcgccggc agcgccgaaa tcctgcgctc
     3361 ggacttcggc atcaaggcct acctgccggc gatcagcgac aaggtgaccc tcaccatgga
     3421 agccgagttc aaggcggcgc cggccgccta gaactagccg cccctagagc aggtccccgc
     3481 cggccgccat cgccgtggtc ccgtccttct ggaaggcctt gatgacgttg cggccgactg
     3541 tccagcggtg cacctcgtcg ggaccgtcca ccagccgctg cgaacggatg tgggtgtacc
     3601 acccggcgag cggggtatcg aggctgtagc ccagcgcccc gtgcagctgg atcgccgtgt
     3661 cgaccacgtg atggaccatg tgggcgagat agaccttggc gatggaattc tcctgccgca
     3721 tgtccatgcc cttctcggcc ttgtaggcga tgtgcagcag catcaggcgg gagatgtaga
     3781 gctgggtcgc acactcggcg agcatgaact ggacggcctg gcggtcgctg agtttgcgcc
     3841 cgaaggtctc gcggtcggtg acgcgggcgg tggccatgtc cagcgcccgc tgggccatgg
     3901 cgacgttgtg catgccgtgc cgaagccggc cgtaggccag acggtgctgg cccatgtcga
     3961 agccgcggcc ctcgccgccc aaaaggttct cggccgggac caccaggtcc ttgatctcga
     4021 tctcggcgtg gccgccgccc atcacctcgg ccagcgggcc atggacggcc atggtcggga
     4081 tgtcgcgctt gatcttgtaa ccggggttcg gcagctcgac gatgaaggtc gagaactgtt
     4141 ggtggcgcgg cgcgtctgga tcggtgcggg ccatgaccag ggccaggtcc gcggcgctgg
     4201 cggcggagga gaaccacttt tcgccattca gcacataatt ctcgttgccg tccttgaccg
     4261 ctgacgtgcg catgccggtg gcgtcggcgc ccgaggcctt ctccgtcatg gagtagcaga
     4321 cgcgcttctc accattcagc agcggcttga ggaacttctc cttctgaaag tcggtgccgt
     4381 gcgccagcaa cgtcaggatg gtggcgtcat ccggcccttg gctgttcatg gagagggcgc
     4441 ccaggtggct ctggccgagc tccatctgga cgagcgcgtt ggcgagcggg cccagaccca
     4501 tgccgccgta ttccgtgggc acgaagggga gccacaggcc ttgggcgcgg gccttggtcc
     4561 ggagctcggc cagcacggac ttgtaggagg ccttgtcctt gatccgcgcc tcggccggga
     4621 tgcattcgtc cttcacccac tgacgcacgc gctcgcggac ggccttggct tccggcggga
     4681 tctcgaagtc gatggacatg gcgcttcctc ttggctggcg tgttttcgac agcctccgcc
     4741 gcccggcggc ggggggcaag gaagaagcgc ggggccgcct gctagcgctc gcccatctgg
     4801 ccgcgctcgc ccgtttcctt gcgggccttt tcgaggtcga cgccctccgc gccgtccagg
     4861 gcctgttcgg cttccttggc cttctgttcg atgccgccct ttttcacgaa ggcgcgttct
     4921 tcaccgtcga acttgcgggc cgcgtcgtag ttgccctcgc cctgaatctg gctagagggg
     4981 ttcttgctct tgtcggtcat ggccaagcct ccttcattcc aaggggacaa cccggcggct
     5041 ggcgcgaggt tccgaataga atatctctat tggttccata aaataaaacg attagctcta
     5101 ttgttccgaa tgaccatagt gcgccattga agccaagggc cgacgcgaac cccaagcgcc
     5161 ggcggacagc cgaaatggag acgacgatga gcctggccac cagcaagacc ctcgacaacc
     5221 tcaaggccgc cttcgcgggc gagagccagg cgaaccggcg ctacctctac ttcgcgcaga
     5281 aagccgacgt ggaaggctac aacgacgtcg ccgcggtgtt ccgctcgacg gcggaaggcg
     5341 agaccggcca cgcccacggg catctcgagt tcatggaggc ggttggagat ccggccacgg
     5401 gcctccccat cggcggcacg tcgctgaacc tcaaggccgc catcgctggc gagacccacg
     5461 aatacaccga catgtatccg ggcatggcgc gcaccgcgcg tgaggaaagc ttcgacgaga
     5521 tcgccgactg gttcgagacc ctggccaagg ccgagaagtc gcacgccggc cgcttccagc
     5581 gcgcgctcga caccctcgac taagacgtcc aagggcggtg gctcagccga gccgccgccg
     5641 cgtcctttaa cgcggcaggt ccaacgtgag cgatagcaag accgactcgg cggggggccc
     5701 tccgcgcgag ggcagcctcg acgcgccctt ccgccatccc atcgcttggc gcgacgagac
     5761 ctattacgac ctggaaaagg tcgaggccga gatgactcgg cagttcgacg tctgtcacac
     5821 ctgccgccgc tgcttcaacc tgtgcgacag cttccccagg ctcttcgacc tgatcgacga
     5881 gagcaagacc ggcgagctcg atagcgtgcc ggcatccgac tacgccaagg tcgatgaagc
     5941 ctgcacgctc tgcgacatgt gcttcctcac caagtgcccc tacgtcccgc cgcacccctt
     6001 cgacatcgac atcccgcacc tgatcctgcg ctaccgcgcc gccaagcgga aagccggcgc
     6061 ccgggagttc gtgcgcgagc agctcggcca gaccgaccgc aacggcaagc tcgccaagcc
     6121 cttcgccggc gtcgtcaacg ccatgagcgc gcgcaagaac acgcccctgc gcaagctgct
     6181 ggaggcgatc gcccagatcg acgccgaggt cgagctgccg aagtactatt ccaagaccgc
     6241 caccgaccgg ctgaagaacc cgctggcccc caaccccgcc ggccctgcct ttggccagcg
     6301 caaggtcgcg ctctacgcca cctgcttcgt cgactacaac gagcccgaca ccgcggtggc
     6361 tgcggctcgt gtcctggcgt tgcagggcgt cgaggtgaag ctggtctatc cggaatgctg
     6421 cggcatgccg cagctggagg ccggggacct gaaggacgtg gccgaccgcg ccggccgcgt
     6481 ggcgaccgtc ttcgcgcccc tcatcgccga cggctttgac gtggtcgcgc tcacagcctc
     6541 ctgcggcctg atgatgaagt tcgaatggcc gctgatcgag ccggagaaca aggccgtggt
     6601 ggcgctctcg gcggcgacca aggacatctg cgaatatgtt gtcgagctgc agaagaccta
     6661 tggtctggcc gaaggtctag cgccggtcga gggcgggatc accc
//
LOCUS       DATAJL010000830         4152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_123079,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000830 DATAJL010000000
VERSION     DATAJL010000830.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4152
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123079"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..460)
                     /locus_tag="VHN39_15760"
     CDS             complement(<1..460)
                     /locus_tag="VHN39_15760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817848.1"
                     /translation="MVSLIGTVDYVLPAGQSLSFNITDVTSYQPLLMLETDLTTDVEH
                     VTIAGSITLTTDPLQARQGTELGVITTSDFHGDRHASVVDITPTGVLHVDTSASNLVP
                     FGIFFGGTPPPVVNEGLIDVKADQIAVGVFVQAQNSDFGQAVTNIGTIHVV"
     gene            complement(554..3214)
                     /gene="metH"
                     /locus_tag="VHN39_15765"
     CDS             complement(554..3214)
                     /gene="metH"
                     /locus_tag="VHN39_15765"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HEX2817849.1"
                     /translation="MRPLFINVGERTNVTGSAKFRKLITDGDYPAARSVARQQVDAGA
                     QVLDVNMDEGLLDSQAAMVTFLNLIAAEPDIARVPLMVDSSKWEVIEAGLRCVQGKAI
                     VNSISMKEGEAKFIEQARACLRYGAAVVVMAFDEVGQADTAARKIEICQRAYKILTEQ
                     VGFPAEDIIFDPNIFAVATGIDEHNNYAVDFIEACREIKATLPHARISGGVSNVSFSF
                     RGNEPVRRAIHGVFLYHAIAAGMDMGIVNAGELPVYDDIPEELRVAVEDVILNRPQRT
                     NVSNTERLVELAPKYKGGKSEAKGPDLAWREGDVGQRITHALVHGLTDFIEADTEEAR
                     AGSERPLHVIEGPLMDGMNVVGDLFGSGKMFLPQVVKSARVMKQAVAYLEPFMEAEKE
                     GKPREAAGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPCDRILDEAIAQK
                     VDMVGLSGLITPSLDEMAYVAGEMERRGFKIPLLIGGATTSKTHTAVKIEPKYKGGQT
                     TYVLDASRAVGVVSGLLSPTERDRLQAETAADYVKVREAFARGQDKRARATLAEARDN
                     AFTPDWTVYEPPKPSFIGTRTFEAYDLADLARHIDWSPFFASWELIGRYPQILEDDVV
                     GEAAVSLFADAQAMMQQIIGQQWFTAKGVVGFWPANSDGDDIVVYTDETRTTELTRFH
                     SLRQQMAKDKTQAQGGRANVALSDFVAPVGTRPDWIGGFAVTAGHGEAEIAKAFKDKG
                     DDYSAIMAAALADRLAEAFAEALHRKVRTELWGYVPDEPFDVDALIAEQYRGIRPAAG
                     YPAQPDHTEKGELFRILDAEAATGLSLTESYAMYPTAAVSGLYFSHPESHYFGVGRIE
                     KDQVEDYARRKGWDVKTAERWLGPILNYDT"
     gene            complement(3401..>4152)
                     /locus_tag="VHN39_15770"
     CDS             complement(3401..>4152)
                     /locus_tag="VHN39_15770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEX2817850.1"
                     /translation="INLMGARIAREIADRWTAKEPHKPRFVAGSIGPLPVMLSMSSDV
                     NDPGARKVNFEQVYQAYLEQVRALHDGGVDLFLIETITDTLNCKAAIKAILDLTDEGY
                     ELLPIWISGTITDRSGRTLSGQTVEAFWNSVRHAKPFAVGLNCALGAELMRPHIAELS
                     RIADTLVSAYPNAGLPNAMGEYDETPDQTGHMLHDWAEQGIVNILGGCCGTTPDHIRH
                     VADAVRGLAPRPIPERATAMRLAGLEPFELA"
BASE COUNT          625 a         1407 c         1359 g          761 t
ORIGIN      
        1 acaccacatg gatcgtgccg atattggtga cggcctgtcc gaagtcggaa ttctgcgcct
       61 ggacaaagac tccgaccgca atctggtcgg ccttgacgtc gatcaggccc tcgttgacca
      121 cgggcggcgg cgtcccgccg aagaagatgc cgaacgggac caggttcgag gcgctggtgt
      181 ccacatgcag gacgccggtc ggtgtgatgt cgacgaccga ggcgtggcgg tcgccgtgga
      241 agtccgaggt cgtgatgacg cccagttcgg tcccttgccg cgcctgcagg gggtccgtcg
      301 tcagggtgat ggagccggcg atggtcacat gctcgacgtc ggtggtcagg tccgtctcca
      361 gcatcaggag cggctggtag ctggttacgt cggtgatatt gaaactgagg ctctgcccgg
      421 caggcaggac gtaatcgacc gtgccgataa gactgaccac gcgcgcacac ctttacgccg
      481 cagcgggcgc ccccgccgcg tgggcttgag tttagccctt cccctaggtc aaactcaacc
      541 gttagatgcg tcctcaggtg tcgtagttga ggatcggccc gagccaccgc tcggccgtct
      601 tcacgtccca gcccttgcgc cgtgcatagt cctcgacttg atccttctcg atccggccga
      661 cgccgaagta gtggctttcc gggtgtgaga agtagaggcc gctcaccgcc gccgtcggat
      721 acatggcgta gctctcggtg aggctcaggc ccgtggccgc ctcggcgtcc aggatgcgga
      781 acagctcgcc cttctccgtg tggtccggct gggcgggata gccggcggcc gggcggatgc
      841 cgcggtattg ctcggctatg agcgcatcca catcaaaagg ctcgtcgggg acgtagcccc
      901 agagctcggt gcggaccttc ctgtgcagcg cctcggcgaa ggcctcggcc agccggtcgg
      961 cgagcgccgc ggccatgatc gccgaatagt cgtcgccctt gtccttgaag gccttggcga
     1021 tctccgcctc gccgtggccg gcggtcaccg cgaagccgcc gatccagtcg ggccgcgtgc
     1081 ccaccggggc cacgaagtcg ctgagcgcca cattggcccg gccgccttgc gcctgggtct
     1141 tgtccttggc catttgctgg cgaaggctgt ggaaccgggt gagctcggtc gtccgcgttt
     1201 cgtccgtata gaccacgatg tcgtcgccgt cggaattggc cggccagaag cccaccacgc
     1261 ccttggcggt gaaccactgc tggccgatga tctgctgcat catcgcctgg gcgtcagcga
     1321 acaggctgac cgcggcctcg cccaccacgt cgtcctccag gatctgcgga tagcggccga
     1381 tcagctccca gctggcgaag aacggcgacc agtcgatgtg gcgcgccagg tcggccaggt
     1441 cataggcctc gaaggtccgc gtgccgatga agctcggctt cggcggctca tagaccgtcc
     1501 agtcgggcgt gaacgcattg tcgcgcgcct cggcgagcgt ggcccgcgcg cgcttgtcct
     1561 gcccgcgggc gaaggcctcg cgaaccttga cgtagtccgc cgccgtctcc gcctgcagcc
     1621 ggtcgcgctc ggtgggcgac agcagccccg agaccacgcc cacggcccgg ctcgcgtcca
     1681 gcacataggt cgtctgaccg cccttgtact tcggctcgat cttgaccgcc gtgtgggtct
     1741 tgctggtcgt ggcgccgccg atcagcaggg ggatcttgaa cccgcgccgc tccatctcgc
     1801 cggccacata ggccatttcg tcgaggctcg gcgtgatcag tcccgagagc cccaccatgt
     1861 cgaccttctg ggcgatggcc tcgtccagga tgcggtcgca gggcaccatg acgcccaggt
     1921 cgatgacctc gtagttgttg cactgcagga ccacgcccac gatgttcttg ccgatgtcgt
     1981 ggacgtcgcc cttgacggtg gccatcagga tcttgccggc cgcctcgcgc ggcttgccct
     2041 ccttctcggc ctccatgaag ggctcgagat aggccacggc ctgtttcatc acccgggccg
     2101 atttcaccac ctgcggcagg aacatcttgc ccgagccgaa caggtcgccg accacgttca
     2161 tgccgtccat caaggggcct tcgatgacgt gcagcggccg ctcggagccg gcgcgggcct
     2221 cctccgtgtc ggcctcgatg aagtcggtca ggccgtgcac cagggcatgg gtgatccgct
     2281 ggccgacgtc gccctcgcgc caggccaggt ccggcccctt ggcctcggat tttccgcctt
     2341 tgtatttggg ggccaactcc accagccgct cggtgttgga gacgttggtc cgctgcggcc
     2401 ggttgaggat cacatcctcc accgccacac gcagctcctc gggaatgtcg tcatagaccg
     2461 gcagctcgcc ggcgttgacg atgcccatgt ccatgcccgc cgcgatggcg tggtagagga
     2521 acaccccgtg gatcgcgcgg cgcaccggct cgttgccgcg gaagctgaaa ctcacgttcg
     2581 agacgcctcc cgagatccgc gcgtgcggca gggtggcttt gatctcccgg cacgcctcga
     2641 tgaagtcgac ggcgtagttg ttgtgctcgt cgatcccggt ggcgaccgcg aagatgttgg
     2701 ggtcgaagat gatgtcttcc gccgggaagc ccacctgctc ggtgaggatc ttgtaggccc
     2761 gctggcagat ctcgatcttg cgcgcggcgg tatcggcctg gcccacctcg tcgaaggcca
     2821 tgaccacgac ggcggcgcca tagcgcaaac aggcgcgcgc ctgttcgatg aacttcgcct
     2881 cgccctcctt catggagatc gagttgacga tcgccttgcc ctgcacgcag cgcaggcccg
     2941 cctcgatcac ctcccacttg gacgagtcga ccatcagcgg cacgcgggcg atgtcgggct
     3001 ccgcggcgat caggttcagg aaggtgacca tggcggcctg gctgtccaac agcccctcgt
     3061 ccatgttcac gtcgagcacc tgggcgccgg cgtccacctg ctggcgcgcc acgctgcgcg
     3121 ccgccggata gtccccgtcg gtgatcagct tccggaactt cgccgacccc gtgacattgg
     3181 tccgctcgcc gacattgatg aagagaggtc gcattcaaat ccgcttgctg accgccccgt
     3241 ccccttctcc ccttgcggga gaaggtgtcg gcgtcagccg acggatgagg ggtctttcaa
     3301 atctatccgg ttcatatctc tcggccgagg aggggccgtc cgacccctca tccgacctcg
     3361 ctcgcgaggc caccttctcc cacaggggag aaggaaaccg ttacgccaat tcgaacggct
     3421 ccaggcctgc gagccgcatg gcggtcgccc gctcggggat cggcctcggc gccagacccc
     3481 gcaccgcgtc ggccacgtgg cggatgtggt ccggcgtggt cccgcagcag ccgcccagga
     3541 tgttgacaat cccctgctcg gcccagtcgt gcagcatgtg gccagtctgg tcgggcgtct
     3601 cgtcatattc gcccatggcg ttgggcaggc cggcgttggg ataggcggag acgagcgtgt
     3661 cggcgatccg cgacagctcg gcgatgtgcg gccgcatcag ctccgcgccc agcgcgcagt
     3721 tcaggcccac ggcgaagggc ttggcgtggc gcacggagtt ccagaaggcc tccaccgtct
     3781 ggcccgacag cgtgcggccc gaacggtcgg tgatggttcc ggagatccag atcggcagca
     3841 gctcatagcc ctcgtccgtc aggtcgagga tcgccttgat cgcggccttg cagttgagcg
     3901 tgtcggtgat cgtctcgatc aggaagaggt cgaccccgcc gtcgtgcagc gcgcggacct
     3961 gttccagata ggcctgatag acctgctcga aattgacctt gcgggcgccc ggatcgttca
     4021 cgtccgagct catcgacagc atcaccggca agggcccgat ggagcctgcc acaaaccgcg
     4081 gcttgtgagg ttccttcgct gtccagcggt cggcgatttc ccgcgctatg cgggcgccca
     4141 tcaggttgat gt
//
LOCUS       DATAJL010000831         2211 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98732,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000831 DATAJL010000000
VERSION     DATAJL010000831.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2211)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98732"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..1815)
                     /locus_tag="VHN39_15775"
     CDS             complement(202..1815)
                     /locus_tag="VHN39_15775"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX2817851.1"
                     /translation="MFRTLTFVAAIAAPLAVMATAAAAQPGPAYAPFASGSDQQAAMT
                     AGTLTSEQLVKDDLARIAALDRTGPKLNAVIALNPHALADARKLDAERRAGHVRGPLH
                     GIPVLLKDNIESADGTATTAGSLALKDNITGRDAPIVRRLTDAGAVIVGKANLSEWAN
                     FRSTHSISGWTGVAGLVRNPYSTDRTACGSSAGSGVAVSAGLVTLAVGTETDGSVTCP
                     AAINGVVGLKPTLGLVSRTFIVPISAEQDTPGPMTRTVRDAAAMLGAMAGSDPADPMT
                     QEADAHKADYLAGLKPDALKGARIGVLRMTVGRSPQTDAVFEDALAALRKAGAVLVEV
                     KGPDDAAMNAIAANEGESLRVEFKAALNGYLATLPPKVASRTLDDLVAFNAREPREMP
                     LFGQEIFEQSAKAPPITDAGYLRARANAKRLSRAALDKMFADNTVEALVGPSTGPASI
                     VDPIDGSRSLGSYSTLPAVSGYPHLTLPMGNVSGLPVNISFLGLAWSDARLLALGYSF
                     EQATHARINPLFLPNVGARPEFAKAYDPR"
     gene            complement(1947..2129)
                     /locus_tag="VHN39_15780"
     CDS             complement(1947..2129)
                     /locus_tag="VHN39_15780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEX2817852.1"
                     /translation="MHKDQIEGAAKDVAGSTKEGIGKAVGNDRLAAEGASERLEGKVQ
                     KGVGAVKDAARDALKN"
BASE COUNT          317 a          707 c          826 g          361 t
ORIGIN      
        1 ccctattccg aggttcgaaa gcgcatgcgg caagcgccgg acgaacttcg gaatcgggac
       61 actagcaagt gtacgttttc tagtgtgctt ccttggatct gaagttcgct ctgagcctcg
      121 ccctgagtga ggcgaacttc agatccagca cactagagct tggcactcaa attggggcga
      181 aaccccgacg ggacaagggt ctcaacgcgg atcgtaggcc tttgcgaatt cgggacgggc
      241 gccgacgttc ggcaggaaca gcggattgat gcgcgcgtgg gtggcctgtt cgaagctgta
      301 gcccagcgcc agcaggcgcg cgtccgacca ggccaggccc aggaaggaga tattcaccgg
      361 caggcccgag acattgccca tcgggagcgt caggtgcgga tagcccgaga ccgcgggcaa
      421 tgtggagtag gagccgaggc ttcggctgcc gtcgatcggg tcgacgatgc tggccgggcc
      481 ggtggacggt ccgaccaggg cctcgacggt attgtccgcg aacatcttgt cgagcgccgc
      541 gcgggacagc cgcttggcgt tggcgcgggc ccgcaggtag ccggcgtcgg tgatcggcgg
      601 ggccttggcg gactgttcga agatctcctg gccgaacagc ggcatttccc ggggctcacg
      661 ggcgttgaag gcgaccaggt cgtcgagcgt gcggctcgct accttgggcg gcagggtggc
      721 gaggtagccg ttgagcgcgg ccttgaactc gacgcgcagg gactcgccct cgttggcggc
      781 gatggcgttc atggccgcat cgtccggccc cttgacctcc accaggacgg cgccggcctt
      841 gcgcagggcg gcgagcgcgt cctcgaacac cgcgtcggtc tgcggcgagc ggccgacggt
      901 catcctcagc accccgatcc tggcgccctt cagcgcgtcg ggcttcaggc cggccaggta
      961 gtcggccttg tgggcgtcgg cctcctgggt catcgggtcg gcggggtcgg agccggccat
     1021 ggcgcccagc atggcggcgg cgtcccggac agtgcgggtc atcgggccgg gcgtatcctg
     1081 ctccgccgaa atcggcacga taaaggtgcg cgagacgagg cccagggtcg gtttcaggcc
     1141 gacgaccccg ttgatggcgg ccgggcaggt gaccgagccg tcggtctcgg tgccgacggc
     1201 gagcgtgacg aggcccgcgg agaccgccac cccggagccg gcgctggagc cgcaggcggt
     1261 gcggtcggtg gaatagggat tgcgcaccag gcccgcaacg ccggtccagc cggagatcga
     1321 gtgggtggag cggaaattcg cccattccga caggttggcc ttgccgacga tcaccgcgcc
     1381 ggcgtcggtg agccggcgca cgatgggggc gtcgcggccg gtgatgttgt ccttgagcgc
     1441 caaggacccc gcggtggtgg ccgtgccgtc ggcggattcg atgttgtcct tcagcagcac
     1501 cgggatgccg tgcaggggcc cgcgcacatg gccggccctg cgctcggcgt cgagcttacg
     1561 ggcgtcggcg agcgcgtggg ggttgagcgc gatcaccgcg ttgagcttcg gcccggtccg
     1621 gtcgagcgcc gcgatccggg cgaggtcgtc tttcaccagc tgttccgagg tgagcgtgcc
     1681 tgcggtcatg gccgcctgct ggtcggagcc cgaggcgaag ggggcgtagg cgggaccagg
     1741 ctgggcggcg gccgctgtgg ccatgacggc gaggggcgcg gcgatggccg ctacgaaggt
     1801 gagtgtcctg aacatgcgca tccccgactc cggcgccccc attggagccg agccggagca
     1861 aaaacgccag cctgcgcgca gcctcaagat gtgacgaggg ccgcgcctcg cggcgcggcc
     1921 ccggcctcga aatccgttgg gctgagctag ttcttcaagg cgtcccgggc ggcgtccttc
     1981 acggcgccga cgcccttctg gaccttgcct tcaaggcgtt cggacgcgcc ctcggcggcc
     2041 aggcggtcgt tgcccacggc cttgccgata ccttccttgg tggagccggc gacatccttg
     2101 gcggcgcctt cgatctggtc cttgtgcatg gagcactcct tcgcgtgtct ggggccagga
     2161 cggcccgttg cggtgattac gcggaggcca gctcaaggtt cccatccctc c
//
LOCUS       DATAJL010000832         4391 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_72260,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000832 DATAJL010000000
VERSION     DATAJL010000832.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4391
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72260"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1128
                     /locus_tag="VHN39_15785"
     CDS             <1..1128
                     /locus_tag="VHN39_15785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006270869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF885 family protein"
                     /protein_id="HEX2817853.1"
                     /translation="EQEALRAQARIAIETKAQPAYRDLLKFLREEYIPHTTETLAAEN
                     LPDGKAYYRAQIREYTTLDMDPEAIHQLGLAEVAKIHAQMLGVMKETGFKGDFPAFLQ
                     FLRTDPQFYVKDPQELLNRAAWIAKRVDGKLPAFFGWLPRSRFGIEPVAPDIAPFYTS
                     ARGGTNTYLLNTYDLPSRPLYNLTALTMHESAPGHALQGGLAEEQSGLPEYRREVYIS
                     AYGEGWALYCERLGVEMGMYDTPYDRFGMLTFQMWRAARLVVDTGVHHKGWTRAQAIA
                     YLHDNTALADHDIEIEVDRYISWPGQALSYYLGMLAIVDVRAKAEKALGPKFDIRAFH
                     DTVLSMGSVPLPVLRARIDKFIAEGGRDPMPVTWQKAQKAP"
     gene            1128..2537
                     /locus_tag="VHN39_15790"
     CDS             1128..2537
                     /locus_tag="VHN39_15790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2817854.1"
                     /translation="MANLYDLLAAGFPADRGKPAFLLSDGSTVSYAELEGGAAQIAGY
                     LVASGVAPGDRVGLQAEKSVEAVMIYLAVLKAGAVFLPLNAAYTRAEVEYFVGDAEPR
                     IFITDALAFRAEADAAADPLAEAVVRDDADLAALIYTSGTTGRSKGAMLSHGALAANA
                     LALHEIWGFTPDDVLLHALPIFHVHGLFVALHCAFLSGAPMVWLPKFGDAQMIAGLAM
                     STVMMGVPTFYTRLLANPQFSRGRAEHMRLFISGSAPLLESTFAEFEDRTGMRILERY
                     GMSEAVIITSNPLDGERIPGSVGYRLPGVELRIGGSEETGVIEIRGPSVFSGYWRMPE
                     KTAEEFTVDGFFITGDVGRQDPDGRVWISGRAKDLIISGGYNVYPKEIELVLDGLPGV
                     TESAVVGVPHPDFGEAVVAVVIGQGDEGEMIAQCRFLLAPYKSPKRIVFVDDLPRNAM
                     GKVQKNLLRDRYTDLFKAG"
     gene            2558..3328
                     /locus_tag="VHN39_15795"
     CDS             2558..3328
                     /locus_tag="VHN39_15795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2817855.1"
                     /translation="MDLQLKGKTAVVTGGTRGIGRSIAECFADEGANVAVCARNAEQI
                     AETVGALEGRGVKAWGAVVDIADGPALQAFVKQAGEKLGGIDVLVSNASALVQGNSEA
                     DWQAMFDIDMLGAVRTWEAAQPFLTAAAGKTGDAAFLIIASVSAVNSDNPGAYGAMKA
                     ALIHFAKGVARQNAAAKVRCNVISPGTVYFDDGVWGRVKVGMPGFFDQMIKRNPTGRM
                     ATPEEIASATVFLASPRSAFTTGINMIVDGAITQRVNY"
     gene            3339..3920
                     /locus_tag="VHN39_15800"
     CDS             3339..3920
                     /locus_tag="VHN39_15800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817856.1"
                     /translation="MNYNYYELRLKRDRAAQKALADHVHATLGPSATAVFSPLLGFAS
                     NQALVLSEGSAPSEAVMRAPGVVSAERHRLTPTLRPADGARPAAMGVYVHNWFTIDAT
                     GFDEFVKLSGEAWPDFEGHFETRIFGLFAAEPSKDDLMEGARRLLLMTGYRDLNEWQK
                     SRNPAETARNAFAGRRELTRVSLARACVLVPTG"
     gene            3930..>4391
                     /locus_tag="VHN39_15805"
     CDS             3930..>4391
                     /locus_tag="VHN39_15805"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX2817857.1"
                     /translation="MAALSGLKVLDCTHVIAGAYCSLVLADLGADVIKIEPPAGESTR
                     GIGAPSGAAFRAFDFVNRNKRAIALDLSTEQGAAVVRKLAETADVFVENYRPGSMDKM
                     GLGYAALSKINPRLVYCSVSGFGLDGPYRNRGGFDLIAQAMSGIMSFVGETG"
BASE COUNT          726 a         1478 c         1503 g          684 t
ORIGIN      
        1 gagcaggagg cgctgcgggc ccaggcgcgg atcgccatcg agaccaaggc ccagcccgcc
       61 tatcgcgacc tgctgaagtt cctgcgggag gagtacatcc cgcacaccac cgagaccctg
      121 gccgccgaga acctgccgga cggcaaggcc tattaccgcg cccagatccg cgaatatacg
      181 acgctcgaca tggacccgga ggccatacac cagctcggtc tcgccgaggt cgccaagatc
      241 cacgcccaga tgctgggggt gatgaaggag accggtttca agggggactt cccggccttc
      301 ctccagttcc tgcggaccga cccgcagttc tatgtgaaag acccgcagga gctgctgaac
      361 cgcgccgcct ggatcgccaa gcgggtggac ggcaagctgc cggccttctt cggctggctg
      421 ccgaggagcc gcttcggcat cgagccggtc gcgccggaca tcgcgccctt ctacacaagc
      481 gctcgagggg gcacgaacac ctacctgctc aacacctacg acctgccgtc gcggccgctc
      541 tacaacctga cggcgctgac gatgcacgaa tccgcgccgg gccatgcgct acagggcggg
      601 ctggccgagg agcagtcggg cctgccggag taccggcgcg aggtctacat ctcggcctac
      661 ggcgagggct gggcgctcta ttgcgagcgg ctaggcgtcg agatggggat gtacgacacc
      721 ccctacgacc gtttcggcat gctgaccttc cagatgtggc gcgccgcgcg gctggtggtc
      781 gacaccggcg tccaccacaa gggttggacc cgcgcccagg cgatcgccta tctgcacgac
      841 aacactgcgc tcgccgacca cgacatcgag atcgaggtcg accgctacat ctcctggccg
      901 ggccaggcgc tgagctatta cctgggcatg ctggccatcg tcgacgtgcg ggccaaggcc
      961 gagaaggcgc ttgggccgaa gttcgacatc cgggccttcc acgacacggt gctgtcgatg
     1021 ggctccgtgc cgctgccggt gctgcgcgcg cgcatcgaca agttcatcgc cgagggcggc
     1081 cgcgacccga tgccggtcac ctggcagaag gcgcagaaag cgccctgatg gccaacctct
     1141 acgatctcct ggccgcggga ttcccggccg accgcggcaa gccagccttc ctgctgagcg
     1201 acggatcgac ggtcagctac gccgagctgg aaggcggcgc agcccagatc gcgggttacc
     1261 tcgtggcgtc cggtgtcgcg ccgggcgatc gtgtcggcct gcaggcggaa aagtcggtcg
     1321 aggcggtgat gatctacctg gccgtgctca aggccggcgc ggtcttcctg ccgctgaacg
     1381 cggcctatac gcgcgccgag gtcgagtatt tcgtgggcga cgccgagccg cgcatcttca
     1441 tcaccgacgc gcttgccttt cgggccgagg ccgacgcggc cgccgatccg ctcgccgagg
     1501 ccgtggtccg cgacgacgcc gacctggccg cgctgatcta cacctccgga accacgggcc
     1561 gctccaaagg ggccatgctg agccacggcg ccctggcggc caacgcgctc gccctgcatg
     1621 aaatctgggg attcaccccc gacgacgtcc tgctgcacgc cctgccgatt ttccacgtcc
     1681 acggcctctt cgtggcgctg cattgtgcgt ttctgtcggg cgcaccgatg gtctggctgc
     1741 cgaagttcgg cgacgcccag atgatcgccg gcctggccat gtcgacggtg atgatggggg
     1801 tgccgacgtt ctacacccgg ctgctcgcga acccgcagtt cagccgcggc cgggccgagc
     1861 acatgcgcct gttcatttcc ggctcggcgc cgctcctgga atcgaccttc gccgagttcg
     1921 aggaccgcac cgggatgcgc attctcgagc gctacggcat gagcgaggcg gtaatcatca
     1981 cctccaaccc gctggacggc gagcgcatcc cgggcagcgt cggttatcgc ctgccaggcg
     2041 tggaattgcg gatcggtggc tccgaggaga cgggcgtcat cgagatccgc gggcccagcg
     2101 tcttctccgg ctactggcgg atgcccgaga aaaccgcaga ggagttcacc gtcgacggct
     2161 tcttcatcac cggtgacgtg ggccgccagg acccggacgg ccgggtctgg atctccggcc
     2221 gggccaagga tctgatcata tccggcggct acaacgtcta tcccaaggag atcgagctgg
     2281 tgctcgacgg gttgccaggg gtcaccgaga gcgcggtggt gggcgtgccg cacccagact
     2341 tcggcgaggc ggtggtcgcg gtggtgatcg gccagggcga cgaaggcgag atgatcgcac
     2401 agtgccggtt cctgctggcg ccctacaagt cgcccaagcg gatcgtgttc gtggacgacc
     2461 tgccgcgcaa cgccatgggc aaggtgcaga agaacctgct acgcgaccga tacaccgacc
     2521 tgttcaaggc gggctgaaaa cccagggaag gacgaggatg gacctgcaac tcaagggcaa
     2581 gactgcggtg gtcaccggcg gcacgcgcgg cattggccgc tccatcgccg agtgcttcgc
     2641 cgacgagggc gccaacgtcg ccgtctgcgc ccgcaacgcc gagcagatcg ccgagaccgt
     2701 gggggccctg gaggggcggg gcgtgaaggc ctggggcgcg gtggtggaca tcgccgacgg
     2761 cccggcgctg caggccttcg tcaagcaggc gggcgaaaag ctgggcggca tcgacgtcct
     2821 ggtctccaac gcaagcgcgc tcgttcaggg caattcggag gccgactggc aggcgatgtt
     2881 cgacatcgac atgctgggcg cagtgcgcac ctgggaagcc gcccagccct tcctgacggc
     2941 cgcggccggc aagaccgggg acgcggcctt cctgatcatc gcatccgtgt cggcggtgaa
     3001 ctcggacaac cccggcgcct atggggcgat gaaggcggcg ctgatccatt tcgccaaggg
     3061 cgtggcgcgg cagaacgcgg cggccaaggt ccgttgtaac gtcatctcgc cgggtacggt
     3121 ctatttcgac gatggcgtct ggggccgggt caaggtcggt atgccgggct tcttcgacca
     3181 gatgatcaag cgcaacccca ccgggcgcat ggccacgccg gaggagatcg cgtcggcaac
     3241 ggtgttcctg gccagcccgc gctcggcgtt caccacgggg atcaacatga tcgtcgatgg
     3301 cgcgataact cagagagtga actactaagg ccagactctt gaattacaac tactatgagc
     3361 ttcgactgaa acgtgatcga gcggcccaga aggcgctcgc cgatcacgtc cacgcgaccc
     3421 tcggaccgtc cgcgaccgcg gtcttttcgc ctctgctggg ctttgcctcg aaccaggccc
     3481 tggtgctgag cgagggctct gcgccgagcg aggccgtcat gcgcgcgccg ggcgtggtct
     3541 cggcggagcg gcatcggctg acgccgaccc tccgccccgc cgacggcgcc cggccggcgg
     3601 ccatgggggt ctacgtccac aactggttca cgatcgacgc tacgggcttc gacgaattcg
     3661 tgaagctctc cggcgaggcg tggccggatt tcgaggggca cttcgagacc aggatcttcg
     3721 gcctgttcgc cgccgagccc agcaaggacg acctgatgga gggcgcgcgg cggctcctgc
     3781 tgatgaccgg ctaccgcgac ctgaacgaat ggcagaagag ccgcaatccg gcggagaccg
     3841 cgcgcaacgc cttcgcgggc cgccgcgaac tcacccgcgt gtcgctggcc cgggcctgcg
     3901 ttctggtccc cacaggctag gagcccggaa tggccgcgct atcaggtctg aaggtcctcg
     3961 actgcaccca cgtgatcgcc ggggcctatt gctcgctggt gctggccgac ctgggcgctg
     4021 acgtgatcaa gatcgagccg ccggccgggg agagcacgcg gggcatcggc gcgcccagcg
     4081 gcgccgcctt ccgcgccttc gacttcgtca accgcaacaa gcgcgccatc gccctggacc
     4141 tctcgaccga gcagggcgcg gcggtggtgc gtaagctcgc ggagacggcg gacgtcttcg
     4201 tggagaatta ccggccaggc tcgatggaca agatgggcct gggctatgcg gccctgtcga
     4261 agatcaatcc gcggctggtc tactgctcgg tgtccggctt cgggctggac ggcccctacc
     4321 gcaaccgcgg cggcttcgac ctgatcgccc aggccatgag cgggatcatg agcttcgtgg
     4381 gcgagacggg c
//
LOCUS       DATAJL010000833         5010 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_109724,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000833 DATAJL010000000
VERSION     DATAJL010000833.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5010
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109724"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..368
                     /locus_tag="VHN39_15810"
     CDS             <1..368
                     /locus_tag="VHN39_15810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="(2Fe-2S)-binding protein"
                     /protein_id="HEX2817858.1"
                     /translation="FGCGIGQCGACTVHIDGKAVRSCITPLNAVAGKSVTTIEGLDPA
                     GAHPLQTAWVDAQVPQCGYCQSGQIMQAAALLKTTPHPTDADIDHGMNGNLCRCMAYV
                     RIKQAIKLAAKPAKQGAHA"
     gene            365..2632
                     /locus_tag="VHN39_15815"
     CDS             365..2632
                     /locus_tag="VHN39_15815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin cofactor-binding domain-containing
                     protein"
                     /protein_id="HEX2817859.1"
                     /translation="MNAPTRPEDLTAALSRRGFMITATAAGVAMGFAGQADAAGATPA
                     GFEPTIWYSIDRDGIVTVNVIRAELGQHVGTAVARIVADELEADWSKVRIKTVDSDPK
                     WGLMVTGGSWSVWQSYPIYSQAGAAGRMALIEEGAKLLKVAPGACTARHGAVHAGKAS
                     VSFGEIVTHGKLARSLTPEQLAKLPMKPAAERRLIGKATQARDIPGKTNGQGLYGLDA
                     KVPGMVYARPKLPPTRYDSVVTAIDDTAAKAVPGYQKSVALTDPSGTVPGWVVVTADS
                     FIAANKACDLVKVTWKSGDAAKVSEADLQRRSAELMADPKVGGMVVDDPGVDQAFAAA
                     KTKVEATYTTSTALHFQMEPVNALAFEKDGVWEIHTGNQWQSLVLPWLAKALDRPETS
                     IVMKSYLLGGGFGRRLNGDYAVGAALASKAIGKPVKLVFTRADDSRFDSPRSPSVQTL
                     RMAFGEAGRVTAMEHTAAAGWPTLAMAPFFMPKGVNGVAYDPFSVSGADHWYTVGAQR
                     VRAVNNDLANATFRPGWLRSVGPGWTNWALESFMDEAAHSVGADPLAFRLKLLDAAGR
                     NAGSGPTASGGAKRQAAVLARVAAKAGWGKPLPKNTGIGLATTFGQERDMPTWVACAA
                     RVRVDPKTGVVKVEKLDLVVDCGTVVHPDGALSQMQGASLWGMSLALFEGTEFRDGQV
                     KDTNLGAYTPLRMADVPELSIEFMPSTEPPVGLGEPATTVVGPAIGNAIFSAVGARVR
                     DLPIRPAAVLKAMKA"
     gene            complement(2638..3084)
                     /locus_tag="VHN39_15820"
     CDS             complement(2638..3084)
                     /locus_tag="VHN39_15820"
                     /inference="COORDINATES: protein motif:HMM:NF021390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HEX2817860.1"
                     /translation="MENKLRALPILVALILAACHPPAARSEAASPPPRAPQGPVNPDA
                     GVTTYRCVDGSSIVAGYPDNKTAVVTYKDHAYTLKLAPSATGARYTGYGLQWWTKGAH
                     ASIAALKPGGDVAVEPGLECAAAPDQPAANPATRTSFTPSGGAWKP"
     gene            3159..3959
                     /locus_tag="VHN39_15825"
     CDS             3159..3959
                     /locus_tag="VHN39_15825"
                     /inference="COORDINATES: protein motif:HMM:NF017532.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phytanoyl-CoA dioxygenase family protein"
                     /protein_id="HEX2817861.1"
                     /translation="MDEPTRARHVDAIRTDGYTIVENAISPDLVAALNEALVRLERDL
                     DAKPAGNGFEGHRTVRIYNLLAHGAPFAEVPIHASVLPIVEGVLDAQCLISSLSSIAI
                     DPGETAQPIHADDQVIPLEKPHAPIVCNSMWALTDFTEANGATRLVPGSHKRPNPEYG
                     GAYQTIAAEMPKGGVLLWDGALWHGGGANRTEVRRTGSAMNYCAGFIRQQENQQLGLD
                     PRLVKDFPARLQELIGYGVYRGLIGHIDKTSPAQRLNGGGEFRSIWDG"
     gene            complement(3956..4684)
                     /locus_tag="VHN39_15830"
     CDS             complement(3956..4684)
                     /locus_tag="VHN39_15830"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2817862.1"
                     /translation="MRTEDIEYHADGARLVGYLAVDDARPDKRPGVLVAPEGGGLVDL
                     TKSIARRLAEAGYVAFAMDYYGDGKPLTDRNQVMPRINAFMAQPDTIRARAAEALAVL
                     ARQPECDADKLAAIGYCFGGTTVLELARSGADLKAVVGFHSGLGTTRPAVPGEVRPKI
                     LTCIGARDPIIPADQRQAFEAEMTAAGVDWQMNVYGEAGHSFTNPGVGAMGMPGFDYH
                     AETDRRSWAAMIDLFDQTLGVVAV"
     gene            complement(4698..>5010)
                     /locus_tag="VHN39_15835"
     CDS             complement(4698..>5010)
                     /locus_tag="VHN39_15835"
                     /inference="COORDINATES: protein motif:HMM:NF016701.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GFA family protein"
                     /protein_id="HEX2817863.1"
                     /translation="PNYVVLAPKMGFKVTKGEAKVYTSTADSGGEVGRAFCADCGTPL
                     WSITGAMVPFYPVKVGALDDPSGITPALHLYVDSAQPWHLMHEGVPQFPKMPPMGPPP
                     T"
BASE COUNT          820 a         1747 c         1704 g          739 t
ORIGIN      
        1 agttcggctg tggcatcggc cagtgcggcg cctgcaccgt gcatatcgac ggcaaggcgg
       61 tgcgctcgtg catcaccccg ctcaacgcgg tcgccggaaa atcggtcacc acgatcgagg
      121 gcctggatcc ggcgggcgcg cacccgctgc agacggcctg ggtcgatgcc caggtcccgc
      181 agtgcggcta ctgccagtcc ggccagatca tgcaggcggc ggctctcctg aagaccacac
      241 cgcatccgac cgacgccgac atcgaccacg gcatgaacgg caacctctgc cgctgcatgg
      301 cctacgtgcg gatcaagcag gccatcaaac tcgccgccaa acccgccaag cagggagcgc
      361 acgcatgaac gcccccacgc gtcccgagga cctgacggcc gcgctctcgc gccgcgggtt
      421 catgatcacc gcgaccgccg ccggcgtcgc catgggcttt gccggtcagg ccgacgccgc
      481 gggcgcaacg ccggccgggt tcgagccgac catctggtac tcgatcgacc gcgacgggat
      541 cgtcacggtc aatgtgatcc gcgccgagtt gggccagcat gtcggcaccg cggtcgcccg
      601 catcgtcgcc gacgagctgg aggccgactg gtcgaaggtg cgcatcaaga ccgtcgattc
      661 cgaccccaag tggggcctga tggtcaccgg cggcagctgg tcggtctggc agagctatcc
      721 gatctacagt caggccggcg cggcgggccg catggccctg atcgaggaag gcgccaagtt
      781 gctgaaggtc gcgcccggcg cctgcaccgc ccggcacggc gcggtccacg ccggcaaggc
      841 gtccgtgtca ttcggcgaga tcgtcacgca cggaaagctg gcgcgcagcc tcactcccga
      901 gcaactcgcc aagctgccga tgaagccggc ggccgagcgg cggctgatcg gcaaggccac
      961 tcaggcgcgc gatattcccg gcaagaccaa cggccaaggc ctctacgggc tcgatgcgaa
     1021 ggtcccgggc atggtctacg cccggccgaa gctgccgccg acccgctacg actcggtcgt
     1081 caccgccatc gacgacaccg ccgccaaggc tgtgccgggc taccagaaga gcgtcgcgct
     1141 caccgatccc tccggcactg tgccgggctg ggtcgtcgtc accgccgaca gcttcatcgc
     1201 cgccaacaag gcctgtgacc tggtcaaggt gacctggaag tccggcgacg cggcgaaggt
     1261 ctccgaagcc gatctgcagc gccgctccgc cgaactgatg gccgacccca aggtcggcgg
     1321 catggtggtc gacgatccgg gcgtcgatca agccttcgca gcggccaaga ccaaggtcga
     1381 ggccacctac accacctcaa ccgcgctgca cttccagatg gagccggtca acgcgctcgc
     1441 cttcgagaag gacggcgtgt gggagatcca caccggcaac cagtggcaat ccctggtgct
     1501 gccatggctc gccaaggcgc tcgaccggcc cgagaccagc atcgtcatga agagctacct
     1561 cctgggcggc ggcttcggac ggcggctgaa cggcgactat gccgtgggcg ccgcgctggc
     1621 ctccaaagcc atcggcaagc cggtgaagct ggtcttcacg cgggccgatg acagccgctt
     1681 cgattccccg cgctcgccct cggtgcagac cttgcgcatg gcgtttggcg aggccggccg
     1741 cgtcaccgcc atggagcata ccgccgcggc cggctggcca acgctggcca tggcgccttt
     1801 cttcatgccc aagggcgtga acggcgtggc ctacgacccc ttctcggtga gcggcgccga
     1861 ccactggtac accgtgggcg cccagcgtgt tcgggcggtg aacaacgacc tggccaacgc
     1921 caccttccgg cccggctggc tgcgctcggt ggggcccggc tggaccaact gggcgctgga
     1981 aagcttcatg gacgaggccg cccacagcgt cggggcagac cccctcgcct tccggctgaa
     2041 actgcttgat gccgccggcc gcaacgccgg ctccggccca acagccagcg gcggcgccaa
     2101 gcgacaggcc gccgtgctcg cccgggtggc ggccaaggcg ggctggggca agcctctgcc
     2161 gaagaacacg gggatcggcc ttgccaccac cttcggccag gaacgcgaca tgccgacctg
     2221 ggtcgcctgc gccgctcggg tccgggtcga tccgaagacc ggcgtggtga aggtcgagaa
     2281 gctggacttg gtggtcgact gcggcacggt cgtccatccg gacggagcgc tgtcacagat
     2341 gcagggcgcc tcgctctggg gcatgagcct ggcgctcttc gagggcaccg agttcaggga
     2401 tggccaggtg aaggacacca acctgggcgc ctataccccg ctcagaatgg ccgacgtgcc
     2461 cgagctctcc attgagttca tgccatccac tgaacctccc gtgggccttg gagagcccgc
     2521 gacgacggtg gtcggacctg caatcggcaa cgccatcttc agcgcggtcg gcgcgcgggt
     2581 ccgcgacctg ccaatccgcc cggccgccgt gctcaaggcg atgaaggctt agcctcgtca
     2641 gggcttccac gcgccgcctg acggtgtgaa cgatgtgcgg gtggcgggat tggcggccgg
     2701 ctggtctgga gcggcggcgc attccagacc gggctccacg gccacatcgc cgcctggctt
     2761 cagcgcggcg atcgaggcgt gggcgccctt cgtccaccac tgcaggccat agccggtgta
     2821 gcgcgcgccg gtggccgagg gggcgagctt cagcgtgtag gcgtggtcct tgtaggtcac
     2881 gaccgcggtc ttgttgtccg ggtagccggc gacgatcgac gagccgtcca cgcaccggta
     2941 ggtcgtcacg cccgcatcgg gattgaccgg accctgcggt gcgcgcggcg gcggcgacgc
     3001 ggcctccgac ctcgccgccg gagggtgaca ggcggccagg atcagcgcga ccaggatggg
     3061 cagagcccga agtttgtttt ccacgccttg ctcccggata ggctcgcggg tcaccatagc
     3121 cgaaacctca ggttagctcc cggaccccga aaccaagcat ggacgaaccc acccgcgccc
     3181 ggcacgtcga cgccatccgg accgacggct ataccatcgt cgagaacgcc atctcgccgg
     3241 acctggttgc ggcgctgaac gaggctctgg tccggctgga gcgggacctg gacgccaagc
     3301 ccgccggcaa cggcttcgaa gggcacagga ccgtgcggat ctacaacctg ctggcccacg
     3361 gcgcgccctt cgccgaggtc ccgatccatg cctcggtgct gcccatcgtg gagggcgtgc
     3421 tggacgccca gtgcctgatc tcgtcccttt cctccatcgc catcgatcct ggcgagacgg
     3481 ctcagccgat ccacgccgac gaccaggtga tcccactgga gaagccgcac gccccgatcg
     3541 tctgcaattc catgtgggcg ctcaccgact tcaccgaggc caatggcgcg acacgcctgg
     3601 ttcccggtag ccacaagagg cccaacccgg agtacggcgg cgcctatcaa accattgcag
     3661 ccgagatgcc caagggcggc gtgctgctgt gggacggcgc gctctggcac ggcggtgggg
     3721 cgaaccggac ggaggtccgc cgcaccggga gcgccatgaa ctactgcgcc ggcttcatcc
     3781 gccagcagga aaaccagcag ctcggcctcg acccacggct ggtgaaggat ttcccggccc
     3841 ggctgcagga actgatcggc tacggtgtct accgcggcct catcggccat atcgacaaga
     3901 ccagccccgc ccagcgcttg aacggcggcg gcgagttccg ttcgatctgg gacggctaga
     3961 ccgcgacgac gcccagggtc tggtcgaaga ggtcgatcat cgcggcccac gaccggcgat
     4021 cggtctcggc gtgatagtcg aacccgggca tccccatcgc gccgacgccc gggttggtga
     4081 agctgtggcc ggcttcgcca tagacgttca tctgccaatc cacgccggcg gcggtcattt
     4141 ccgcttcgaa ggcctggcgc tgatcggcgg ggatgatcgg atcgcgcgcg ccgatgcagg
     4201 tgaggatctt ggggcgaact tcaccgggga cggcgggccg cgtcgtgccg agacctgaat
     4261 ggaaaccgac cacggccttc aggtccgccc cgctgcgggc gagctcaagc acagtcgtgc
     4321 cgccgaagca gtagccgatc gccgcgagct tgtcggcgtc gcactccggc tgccgggcca
     4381 gcacggccag cgcctcggcg gcccgcgcgc ggatcgtgtc cggctgggcc atgaaggcgt
     4441 tgatgcgcgg catgacctgg ttgcggtcgg tcaggggctt gccgtcgcca tagtagtcca
     4501 tggcgaacgc gacatagccg gcctcggcga ggcgccgagc gatggacttg gtcaggtcga
     4561 ccaggccgcc accctcgggc gcgacgagca ccccaggccg cttgtcgggc cgggcgtcgt
     4621 ctacggccaa gtagccgacc aggcgtgcgc catcggcgtg gtactcgatg tcttcagttc
     4681 tcatgcgggc gttccgatca ggtggggggc ggacccatgg gcggcatctt cgggaactgc
     4741 ggcacgccct cgtgcatcag gtgccagggc tgtgcggagt cgacgtagag atgcagcgca
     4801 ggcgtgatgc ccgatggatc gtcgagcgcg cccaccttca cgggatagaa cggaaccatg
     4861 gccccggtga tcgaccagag cggtgtgccg cagtcggcgc agaaggcgcg gccgacctcc
     4921 ccgccgctat ccgcagtcga ggtgtagacc ttggcttcac ccttggtgac tttgaagccc
     4981 attttcggag ccaggaccac atagttgggg
//
LOCUS       DATAJL010000834         4267 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98796,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000834 DATAJL010000000
VERSION     DATAJL010000834.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4267
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98796"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..506
                     /locus_tag="VHN39_15840"
     CDS             <1..506
                     /locus_tag="VHN39_15840"
                     /inference="COORDINATES: protein motif:HMM:NF018168.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HEX2817864.1"
                     /translation="VGGPSISALFGIGIAARSARASDYQVNPTVANNPATLPFGTLDL
                     SVAAGQPAITPGDGSGALALSQAGQTSTLLKAAGDLGNVTMTLQDYAAQFGGSIGRDA
                     ATADGQSTSATAVQTEADAKRQSVEGVNIDQELISLTTYQNAYSANARMIQATKDLFT
                     VLLGILP"
     gene            547..1479
                     /locus_tag="VHN39_15845"
     CDS             547..1479
                     /locus_tag="VHN39_15845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEX2817865.1"
                     /translation="MDRISTAGSYSAILANLMAAEGRQNNAENRVSTQKNGTDLKAYA
                     NQAETLTAMKSVDARITQYQAGNTQIAAKLSTQDQALSTVADSATAVRQAIADALASG
                     DAGVLMQQVGNQFSTAVNGLNAQFDGKYLFAGGKITTAPVSATQLSDLTTGPPIASFF
                     QNDSLQVKAKLDDSTTVNTGQLASNLATPMMNAFQAIQAFDQGAGGPLNGPLTAAQQA
                     FLTTQLTNWAGVATNLTTQTAQNGLVQKQVDDVATNLVTQQNTLTSMIGGITDADMAK
                     AATDLANAQLSVQATAKVLQALQSDSLLTLLPVA"
     gene            1647..2828
                     /gene="mnmA"
                     /locus_tag="VHN39_15850"
     CDS             1647..2828
                     /gene="mnmA"
                     /locus_tag="VHN39_15850"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEX2817866.1"
                     /translation="MNAPVLIPDRLSDGLIAAARDAVRLPAGARIVAAMSGGVDSTVT
                     AALLTKAGYDVVGVTLQLYDHGAAIQKKGACCAGQDIHDARTVAESLNIPHYVLDYES
                     RFKDQVIEEFADAYLRGETPVPCIRCNQTVKFRDLLDVARDLGAEAMATGHYVRRDVG
                     PAGPELHRAADAARDQSYFLFATTPEQLAYLRFPLGGLPKPAVRAAAAELGLAVADKP
                     DSQDICFVPEGRYTTVIDRLRPHGAEPGDIVHLDGRTLGRHEGVTRYTIGQRRGLNVA
                     VGDPLFVVRIDADARQVIVGPREALLTHACTLKESSWLEAGAIEAACEAARPVLARVR
                     STREPVAGRLALIDGQPAVVFDSPEEGVAPGQACVLYAPEAETRVLGGGFIAGTVRAL
                     A"
     gene            2871..4061
                     /locus_tag="VHN39_15855"
     CDS             2871..4061
                     /locus_tag="VHN39_15855"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX2817867.1"
                     /translation="MTQTSDPVVIASYARTPMGGFQGVFAPVKATELGAAAVRAAVER
                     SRAPSDAIEQIVMGCVLPAGLGQAPARQAAIGAGLPKSVEATTVNKMCGSGMQAAIMA
                     HDALAAGTVDVIVAGGMESMSNAPYLLTKHRAGARIGHDTSYDSMYLDGLEDAYEPGR
                     LMGSFAEESAKTYQFTREAMDEFAIGSLTRAKAASESGAFAREITPFEVVTRKGAILI
                     DTDEQPAKADPAKIPTLKPAFSKDGTITAANASSISDGAAALVMTRESVARKLGMTIV
                     ARVAAHAAHAHEPGLFTTAPVPAIQKCLKRAGWSVNDVDLFEVNEAFAVVAMIAERDL
                     GIDRAKLNVNGGACALGHPIGASGARILATLLSALEARGGKKGVAALCIGGGEATAMA
                     VELV"
     gene            complement(4058..>4267)
                     /locus_tag="VHN39_15860"
     CDS             complement(4058..>4267)
                     /locus_tag="VHN39_15860"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2817868.1"
                     /translation="AARTCIYTSAPDQEFIVDRDPGRAHVVFASACAGHGFKFAPAIG
                     EMLADLACGAPGGEGPFRLARPGLG"
BASE COUNT          711 a         1684 c         1320 g          552 t
ORIGIN      
        1 gcgtcggcgg accgtcgatc agcgcgctgt tcggcatcgg catcgccgcg cgctcggcgc
       61 gcgcctcgga ttatcaggtc aacccgaccg tcgccaacaa cccggcgacg ctgcccttcg
      121 gcacgctgga cctgagcgtc gcggcgggtc agccggcgat cacgccgggt gacggctccg
      181 gcgcgctcgc gctctcccag gccggccaga cctcgaccct gctcaaggcg gcgggcgacc
      241 tcggcaatgt caccatgacc ttgcaggact acgccgcgca gttcggaggc tccatcggcc
      301 gcgacgccgc caccgccgat ggccagtcga ccagcgccac cgccgtccag accgaagccg
      361 acgccaagcg ccagtcggtc gagggcgtca acatcgatca ggaactcatc agcctgacca
      421 cctaccagaa cgcctacagc gccaacgccc gaatgatcca ggccacgaag gacctcttca
      481 cggtcctgct cggcatactc ccctgaccag gccgtaaccc tggccagaac ctacgaggac
      541 tagactatgg accgcatctc caccgccgga agctactccg ccatcctggc caacctgatg
      601 gccgccgagg gccggcagaa caacgccgaa aaccgcgtct cgacgcagaa gaacggcacc
      661 gacctgaagg cctacgccaa ccaggccgaa acgctgaccg cgatgaaatc ggtggacgcg
      721 cggatcaccc agtaccaggc cggaaacacc cagatcgccg ccaagctcag cacccaggac
      781 caggcgctct ccaccgtcgc cgacagcgcc accgcggtcc gccaggccat cgccgacgcg
      841 ctggccagcg gcgacgccgg cgtcctgatg cagcaggtcg gcaaccagtt ctccaccgcg
      901 gtcaacgggc tcaacgcaca gttcgacggc aaatacctgt tcgccggcgg caagatcacc
      961 accgcgccgg tctcggccac ccagctcagc gacctcacca ccggtccgcc gatcgccagc
     1021 ttcttccaga acgacagcct gcaggtgaag gccaagctcg acgattccac caccgtcaac
     1081 accggacagc tggccagcaa tctcgccacc cccatgatga acgccttcca ggcgatccag
     1141 gccttcgacc agggtgcggg cggcccgctg aacggcccgc tcaccgcggc ccagcaggcc
     1201 ttcctgacca cccagttgac caactgggca ggggtcgcca cgaacctgac cacccagacc
     1261 gcgcagaacg gcctcgtcca gaagcaggtc gatgacgtgg ctaccaacct ggtgacccag
     1321 cagaacaccc tcaccagcat gatcggcggc atcaccgacg ccgacatggc caaggccgcc
     1381 accgacctcg ccaacgccca gctctcggtc caggccacgg cgaaggtgct gcaggcgttg
     1441 cagagcgact cgctcctgac gctcctgccg gtcgcctagt cttccctccc ttaatgggga
     1501 gggtgaccga ggcgaagccg aggtcgggtg gggcggtcgc gctcaagcgc tgactcagca
     1561 ttccggccca cacttcccca cccgtctcgg gcctgtcggc gcgatccacc ctccccatga
     1621 aggggaggga tggctatatg gcgcccatga acgcgcccgt tctcatcccc gaccgcctct
     1681 cggacggcct gatcgccgcc gcgcgggacg ccgtgcgcct gcccgcgggc gctcgcattg
     1741 tggcggccat gtcgggcggg gtggattcga cggtgaccgc ggccctgctt accaaggccg
     1801 gctatgacgt ggtcggcgta accctgcagc tctacgacca cggcgccgcg atccagaaga
     1861 agggcgcctg ctgcgccggc caggatatcc acgacgcgcg caccgtagcc gagagcctga
     1921 acattccgca ctacgtcctc gactacgaga gccgcttcaa ggaccaggtc atcgaggagt
     1981 tcgccgacgc ctatctgcgc ggcgagacgc cggtcccctg catccgctgc aatcagacgg
     2041 tgaagttccg cgacctgctg gatgtcgcgc gggatcttgg cgccgaggcc atggccaccg
     2101 gccactacgt ccgccgcgac gtgggcccgg ccggccccga actgcaccgc gccgcggatg
     2161 cggcccgcga ccagagctac ttcctgttcg cgacgacgcc ggaacagctg gcctacctgc
     2221 gcttcccgct gggcggcctg ccgaagcccg ccgtgcgcgc cgccgccgcc gagctgggcc
     2281 tcgccgtggc cgacaagccg gacagccagg acatctgctt cgtgcccgaa ggccgctaca
     2341 ccacggtcat cgatcgcctg cgcccccacg gcgccgagcc cggcgacatc gtccatctgg
     2401 atggccgcac cctcggccgc cacgagggcg tcactcgcta caccatcggc cagcgccggg
     2461 gcctcaacgt cgccgtgggc gatccgctgt ttgtggtccg catcgacgcc gacgcacgcc
     2521 aggtgatcgt cgggccgcgc gaggccctgc tgacccacgc ctgcacgttg aaagaatcaa
     2581 gctggctgga ggccggcgcg atcgaggccg cctgcgaggc cgcccgccct gtcctggccc
     2641 gcgtgcgctc cacccgcgag ccggtcgcgg gccgccttgc cctcatcgac ggccagcccg
     2701 ccgtcgtgtt cgacagccct gaagagggtg ttgcccccgg ccaggcctgc gtcctctacg
     2761 cgcccgaggc cgagacccgc gtcctcggcg gcggcttcat cgcgggtacg gtgcgcgcgc
     2821 tcgcctagcc atgggatgac gcgggcaggg cgcgagccta tatcccgccc atgacccaga
     2881 cctccgaccc cgtcgtcatc gccagctatg cccgaacccc catgggcggc ttccagggcg
     2941 tcttcgcccc cgtgaaggcc accgagctcg gggccgccgc cgttcgcgcc gccgtggagc
     3001 gctccagggc gccgagcgac gccatcgagc agatcgtcat gggctgcgtc ctgccggccg
     3061 gccttggcca ggcgcccgcc cgccaggccg cgatcggcgc gggcctgccc aagtccgtcg
     3121 aggccaccac ggtcaacaag atgtgcggct cgggcatgca ggccgcgatc atggcgcacg
     3181 atgcgctggc cgccggcacc gtcgacgtca tcgtggcggg cggcatggag agcatgtcca
     3241 acgcccccta cctcctgacc aagcaccgcg ccggcgcccg catcggccac gacacctcct
     3301 acgacagcat gtacctggac ggcctcgagg acgcctacga gcccggccgc ctgatgggct
     3361 ccttcgccga ggagtccgcc aagacctacc agttcacccg cgaggccatg gacgagttcg
     3421 ccatcggctc gctcacccgc gccaaggccg cgtcggagag cggcgccttc gcccgcgaga
     3481 tcaccccctt cgaggtggtc acccgcaagg gcgccatcct catcgacacc gacgaacagc
     3541 ccgccaaggc cgaccccgcc aagatcccca cgctcaagcc ggcgttctcg aaagacggga
     3601 cgattaccgc cgccaacgcg tcgtcgatct cggacggcgc cgccgcgctc gtcatgaccc
     3661 gcgagtccgt ggcccggaag ctcggcatga ccatcgtggc ccgcgtcgcc gcccacgccg
     3721 cccacgccca cgagcccggc ctcttcacca ccgcgcccgt gcccgccatc cagaagtgcc
     3781 tgaagcgcgc cggctggtcc gtgaacgacg tcgatctctt cgaggtcaac gaggccttcg
     3841 ccgtggtcgc catgatcgcc gagcgcgacc tcggcatcga ccgggcgaag ctcaacgtca
     3901 acggcggcgc ctgcgcgctc ggccacccca tcggcgcctc aggcgcccgc atcctggcca
     3961 ccctgctcag cgccctggaa gcccgcggcg gcaaaaaggg cgtcgccgcc ctctgcatcg
     4021 gtggcggcga agccacggcc atggccgtgg aactggtcta gcccaacccc ggccgcgcca
     4081 accggaacgg cccctcgccc cccggcgcgc cacacgccag gtcagccagc atctcgccga
     4141 tcgcaggcgc gaacttgaac ccgtgccccg cacaggcgga cgcgaacacc acatgggcgc
     4201 ggccggggtc gcggtcgacg atgaattcct ggtccggcgc gctcgtgtag atgcaggtcc
     4261 gcgccgc
//
LOCUS       DATAJL010000835         1911 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98803,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000835 DATAJL010000000
VERSION     DATAJL010000835.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98803"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..849)
                     /locus_tag="VHN39_15865"
     CDS             complement(<1..849)
                     /locus_tag="VHN39_15865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817869.1"
                     /translation="MGSTSTLAFGIGRVVTAVVDYGRDFVANDALKAGMTIFWVIFFF
                     HIIEGAAEMTADPSSCRLMKGKFWLRMCLVTALLGGYQTVVVGTVASVQPRYMTAFTD
                     KWAEVWAGEWQAIDQIKAAEADNQDLKYNEVAATKTGHGDDSFGAKVARFVVDGLVTA
                     LGWVFASIAGSMITVFMLMEGFYGLGIAMVLVAVGPICIAFAAHEKTEAIFWSYFRAF
                     LVLGLLYMPMLGVACAFAGIIMAHMTTMVTASGVVYGDGTDIGVHLVMVVLGPICAFA
                     VVRAVPA"
     gene            complement(880..1665)
                     /locus_tag="VHN39_15870"
     CDS             complement(880..1665)
                     /locus_tag="VHN39_15870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817870.1"
                     /translation="MKKLVLVVIVVGAVASVPRRAEAQWEVHDLAAITQRLTQFTQYL
                     IQFNEIITTARGHFEAFKEVYNGLKDWRNLGWADVLSLVDLPWFDGVDGIDDIRRATY
                     VSVMTVDQANALWDNLQYVDPWRTNPRYRTDPWFRAKVDSLLRQSKRARATRAALLRQ
                     MQMQNKAVSDDVAKIKRLRDAIELENKSSPPSQAKIASLQAEIAAVEARYKGEDLMLK
                     NQQAIIFLVGEDEAQRAYLETRDRGWIIQNNKSLMDIGAAMSR"
     gene            complement(1662..>1911)
                     /locus_tag="VHN39_15875"
     CDS             complement(1662..>1911)
                     /locus_tag="VHN39_15875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817871.1"
                     /translation="NRVLSVEISPALYWFATTDGEDKHWRSVFCQHFGFVDGIRHLVA
                     ACADKTIPGGELRIAKVRAYAEALGIVRAVARPPESSP"
BASE COUNT          331 a          649 c          594 g          337 t
ORIGIN      
        1 ggccgggacg gctcggacca cggcgaaggc acagatgggt cccaggacga ccatcaccag
       61 gtggaccccg atgtcggtgc cgtcgccgta gaccacaccc gacgccgtga ccatcgttgt
      121 catgtgggcc atgatgatcc ccgcgaatgc gcacgccacg ccgagcatag gcatgtagag
      181 caagccgagc accaggaagg ctcggaagta cgaccagaag atcgcctcgg tcttctcgtg
      241 cgccgcgaag gcgatgcaga tcgggcccac cgcgacgagg accatggcaa tcccaaggcc
      301 gtagaagccc tccatcagca tgaacacggt gatcatcgag cccgcgatgc tggcgaacac
      361 ccagccgagc gccgtcacca ggccgtcgac cacgaaccgg gccaccttcg ccccgaacga
      421 atcgtccccg tggccggtct tggtcgcagc gacctcgttg tatttcagat cctggttatc
      481 ggcctcggcg gccttgatct ggtcaatggc ctgccattcg cccgcccaga cttccgccca
      541 cttgtccgtg aacgccgtca tgtagcgcgg ctggacgctc gccaccgtac cgacgacgac
      601 ggtctggtac ccaccgagga gcgcggtcac gaggcacatc cggagccaga actttccctt
      661 catgagccgg cacgagctcg gatctgcggt catctcggcc gccccttcga tgatgtggaa
      721 gaagaagatg acccagaaga tggtcatgcc cgccttgagt gcgtcgttgg ccacgaagtc
      781 gcggccatag tcgaccacgg cggtcaccac ccgaccgatt ccgaatgcca gggtactcgt
      841 cgaacccacg tgtcacctcc tttgcgacct gtggagcgct cagcggctca tcgccgcgcc
      901 gatgtccatc aggctcttgt tgttctggat gatccagccg cggtcacggg tttcgagata
      961 cgcccgctgg gcctcgtcct cgccgaccag gaagatgatg gcctgctggt tcttcagcat
     1021 caggtcctcg cccttgtacc gggcttcgac cgcggcgatc tcggcctgga ggctcgcgat
     1081 cttcgcctgg ctcggggggc tgctcttgtt ctcgagctcg atggcgtccc ggagccgctt
     1141 gatcttcgcc acgtcgtcgc tcaccgcctt gttctgcatc tgcatctggc gcaggagggc
     1201 agcccgcgtg gcgcgcgccc gctttgactg gcggagcagg gaatcgacct ttgcccgaaa
     1261 ccaagggtcc gtccggtacc gggggttggt gcgccaggga tcgacgtatt gcaggttgtc
     1321 ccagagggca ttcgcctggt cgaccgtcat caccgagacg taggtcgccc gccggatgtc
     1381 gtcgatgcca tcgacgccgt cgaaccaggg caagtccacc agcgacagga cgtccgccca
     1441 cccgagattg cgccagtcct tgaggccatt gtagacctcc ttgaacgcct cgaagtgccc
     1501 gcgcgcggtc gtgatgattt cgttgaactg gatcaggtac tgcgtgaact gggtgagccg
     1561 ctgggtgatt gccgcgagat cgtgaacctc ccactgggct tccgcccgtc gggggacgct
     1621 cgccacggcc cccaccacga tgaccaccag aaccagcttc ttcacggtga gctctccggg
     1681 gggcgcgcca ccgcccgcac gattcccagc gcctcggcat aggcgcggac cttggcaatc
     1741 cgcagctcgc cccctgggat ggtcttgtcg gcgcaggccg ccaccaggtg gcgaatccca
     1801 tcgacgaaac caaagtgctg gcagaagacg ctgcgccagt gcttgtcctc gccgtcggtc
     1861 gtcgcgaacc agtagagcgc cggggagatc tcgacggaca ggacgcggtt g
//
LOCUS       DATAJL010000836         6338 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_85990,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000836 DATAJL010000000
VERSION     DATAJL010000836.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6338
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85990"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..758)
                     /locus_tag="VHN39_15880"
     CDS             complement(96..758)
                     /locus_tag="VHN39_15880"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2817872.1"
                     /translation="MPIVLAYAEPPAAVAPAPPRPSVITMPDWLRKPTGADMAEFYPK
                     PAAAAHVEGRAVLHCRVAATGDLTDCAASNDEPAGQGFGEAALRLSALFKMRPMTKDG
                     VPVAGGQINIPIRFMLPKQAPLNLETALECYGATAVGKVMLTNGEAADVGWRDAASAL
                     AKAEHVPASDLDASLTAAREIADTPGSREGAPPCCSVAAKSATPAPCKRSAPGLRHRR
                     AR"
     gene            867..1601
                     /locus_tag="VHN39_15885"
     CDS             867..1601
                     /locus_tag="VHN39_15885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEX2817873.1"
                     /translation="MPRIVTYNVHRCVGNDRRLDVGRIADVLAGLKPDIVALQELDVG
                     RRRTGHVDQAHEIGRRLDMACHFHAALTVEEERYGDAILTCFPERLVKVGPLPGHPGI
                     RALEPRGALWVEVEIDGAPVQILNTHLGLVPKEQQLQAAHLAGPAWLGHPRCQGPTIL
                     LGDFNATATSVVYRTFLKGLSAARGLAKTKTPTATFPSPMPVLRLDHLFVSPEIKVSD
                     VFAPYAPLTRVASDHLPLVMDFEVAG"
     gene            complement(1598..3067)
                     /locus_tag="VHN39_15890"
     CDS             complement(1598..3067)
                     /locus_tag="VHN39_15890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D-like domain-containing protein"
                     /protein_id="HEX2817874.1"
                     /translation="MLRAGDTCWRTARADRAAFLVDTEAYFAAVFDALQKARRSVLLL
                     GWGFDPRTRLFPDGYDGPDDPDEVGRILVELACAKPELDVRLLIWRSAFPIAAQQEFF
                     PHKARAWFKNTPVKFRLDDQVPFGACHHQKVLVIDDRVAFCGGGDISVDRWDTAGHRD
                     DDQRRIMPDQDYHPPRHEVMMLVDGPAATALADLVRERWTKATEEILAPPEDAGGDPW
                     PEHVPAAMTDVEVGIARTLPVWKRQREVDEIRRLTLASIAQARETIYLENQYFTSPLI
                     TEALAARLAEPGGPQVVLISTGHAPSWFDHLTMDRARGAMIWRLRSADIFGRFRAFWP
                     ATQGGETIIVHSKTSVFDDRLVRVGSANLNNRSFGFDTECELAVEGDDEETRRAIEAF
                     RDRLVGHFMGQTGDAVAKARADHGGLVGAIDALNRDGRLQPIEPPKVTRVGEFFAKYH
                     LGDPQDPRDSWNPGRRRERLYEAVRRMQVLEAPPEAKPN"
     gene            complement(3278..3637)
                     /locus_tag="VHN39_15895"
     CDS             complement(3278..3637)
                     /locus_tag="VHN39_15895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817875.1"
                     /translation="MKTAAILLAVIGLAVAGAATASDHLTDVDYLKANRCRGLAEGLG
                     SGDIAGLDALIKTEGRSRVEAIYSRGQEELSRGKKEASHTDSRDRLSAELNGPCTAYL
                     GGAQASASAGKNASTAH"
     gene            3815..4243
                     /locus_tag="VHN39_15900"
     CDS             3815..4243
                     /locus_tag="VHN39_15900"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX2817876.1"
                     /translation="MAMPTPVLDAAGVNALLRKAFPDATPAAFPEVTLVSPGRVKVVA
                     PYREGLLRPGGVISGPTLMSLSDTAAYALVLAHIGDQLMAVTSSLTMNFLRGAKPGDL
                     HAEAEMLRLGRRNAVCDVRLWTESPDRLAAQAIVTYAIPQ"
     gene            4240..4485
                     /locus_tag="VHN39_15905"
     CDS             4240..4485
                     /locus_tag="VHN39_15905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HEX2817877.1"
                     /translation="MSPPIRDEDAAPPSGPPRAIATPCIKVCVVDGESGLCMGCYRQL
                     SEVAGWQRLTDGDRARIMAELPGRRSRIRPEKLAMFG"
     gene            4738..5268
                     /locus_tag="VHN39_15910"
     CDS             4738..5268
                     /locus_tag="VHN39_15910"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02281 family clan AA aspartic protease"
                     /protein_id="HEX2817878.1"
                     /translation="MSNVWKFVFVIFVAGVSGLVSAQAVVTVADRDPVLRAANAQAAI
                     SQANAEAAQGGVRAAIPKSSDGHYWADGQVNGASVRFLVDTGASAVSLTPDDARRLGF
                     DTAALSYSSRVTTAAGQARAASVKLASLTVSGARLENVDALVIEKGLDTSLLGMTYLG
                     RLASFQATRQALVLQP"
     gene            complement(5212..6270)
                     /gene="dusA"
                     /locus_tag="VHN39_15915"
     CDS             complement(5212..6270)
                     /gene="dusA"
                     /locus_tag="VHN39_15915"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017150 - tRNA dihydrouridine synthase
                     activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0002943 - tRNA dihydrouridine synthesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HEX2817879.1"
                     /translation="MTQYQAHRFCVAPLMDWTDRHCRVLHRTLSARAVLYTEMLTTGA
                     ILHGDRRRLLSFDAAEHPVALQLGGSEAADLVEAARIGEAEGYDEINLNVGCPSDRVQ
                     SGRFGACLMREPELVADCMAAMGAAVKVPVTVKCRIGVDDQEPAESLFRLVDLCAAAG
                     VRHFVVHARKALLKGLSPKENRDVPPLDYPLVWRLKAERPELTIVINGGIGSLEEAKA
                     HLAHVDGVMLGRAAYHTPGLLGEVDARLFGGSEVVTPGEAVARYRPYIARELAAGTHL
                     AAMTRHMLGLYHGARGARTWRRILTVESVKPGAGLEVVDAALAAVSSRLGDEPSEEKA
                     LGLQDQRLARRLEAGEAA"
BASE COUNT          980 a         2234 c         2107 g         1017 t
ORIGIN      
        1 cgacgaccgc cggtggctcg gcataggcaa ggactatagg catttgacgc tctcctgaac
       61 gcgacaattc actcagcgcg gcggctcggc gagcttcaac gcgcccgccg gtgtcgaagg
      121 cctggggcgg agcgcttgca cggcgccgga gttgcggatt tcgcggcaac gctgcagcag
      181 ggcggagcgc cctcgcggct tccgggtgtg tcagcgattt cccgggcggc cgtcaggctg
      241 gcgtcgaggt cgctggcggg aacatgttcc gccttggcga gggccgaggc ggcgtcgcgc
      301 cagccgacgt cggcggcctc gccgttggtc agcatcacct tgcccacagc ggtggcgccg
      361 tagcactcca gcgccgtctc aagattgaga ggcgcttgct tcggcagcat gaaacggatc
      421 gggatgttga tctgaccgcc ggcgaccggg acgccgtcct tggtcatcgg ccgcatcttg
      481 aagagggcgg agaggcgcaa cgcagcctcg ccgaagccct gacccgcggg ctcgtcgttc
      541 gacgcggcgc agtcggtgag atcccccgtc gcggccaccc tgcaatgcag caccgcgcgc
      601 ccctcgacat gcgccgcagc ggcgggcttc gggtagaact cggccatgtc cgcgccggtc
      661 ggcttgcgca gccagtccgg catcgtgatc acgctcggcc gtggcggcgc gggcgcgacg
      721 gcggccggcg gctcggcata ggcaaggacg atcggcattt gacgctccgc agaatcccca
      781 cggcaaccta gccgcgaacc tccccgccgt cccagccgtt cccttggcct tgcccccgcc
      841 gcagaagacg cgcaccccaa aggcctatgc ccaggatcgt cacctacaat gtgcaccgct
      901 gcgtcgggaa cgaccggcgg ctggacgtgg ggcggatcgc cgacgtgctg gcggggttga
      961 agccggacat cgtggccctg caggaactgg atgtcgggcg ccgccgcacc ggccacgtgg
     1021 accaggccca tgagatcggc cggcggctcg acatggcctg ccactttcac gccgcgctga
     1081 cggtggagga ggaacgctac ggcgatgcca tcctgacctg tttccccgag cggctggtca
     1141 aggtgggccc cctgcccggc catccgggca tccgcgcgct cgagccgcgc ggcgcactgt
     1201 gggtcgaggt cgagatcgat ggcgctccgg tgcagatcct caacacccac ctgggcctgg
     1261 tgcccaagga acagcagctg caggccgcgc acctggccgg acccgcctgg ctcggccatc
     1321 cgcgctgcca gggcccgacg atcctcttgg gcgacttcaa cgccacggcg acctcggtgg
     1381 tctaccgcac cttcctcaag ggcctgtccg cggcccgggg cctcgcgaag accaagacgc
     1441 ccaccgccac cttcccctcg ccgatgccgg tcttgcggct cgaccatctg ttcgtcagcc
     1501 cggagatcaa ggtgagcgac gtcttcgccc cctacgcgcc gctgacccgc gtggcctcgg
     1561 accacctgcc gctggtgatg gacttcgagg tggcgggcta gtttggcttc gcctccggcg
     1621 gcgcctccag cacctgcatc cggcgcacgg cctcgtagag ccgctcgcgg cgccgaccgg
     1681 ggttccagga gtccctgggg tcctgcgggt cacccaggtg gtatttcgcg aagaactcgc
     1741 cgacgcgggt caccttgggc ggctcgatgg gctgcaggcg gccgtcgcgg ttgagcgcgt
     1801 cgatggcgcc gacgagcccg ccatggtcgg cgcgggcctt ggcgaccgcg tctccggtct
     1861 gtcccatgaa gtggccgacc aggcgatccc ggaaagcctc gatggcgcgg cgggtctctt
     1921 cgtcgtcgcc ctccaccgcc agctcgcact ccgtgtcgaa cccgaacgag cggttgttga
     1981 ggttggccga acccacccgg accaggcggt catcgaagac gctggtcttg gagtggacga
     2041 tgatcgtctc cccgccctgg gtcgccggcc agaaggcgcg gaaacgcccg aagatgtcgg
     2101 ccgagcgcag gcgccagatc atcgcgccgc gcgcccggtc catggtcagg tggtcgaacc
     2161 agctgggcgc atgtccggtg gagatcagca ccacctgcgg cccgccgggt tcggccagcc
     2221 gcgcggccag ggcctcggtg atcaggggcg aggtgaagta ctggttctcc agatagatcg
     2281 tctcccgggc ctgggctatc gaagccaggg tgagtctgcg gatctcgtca acctcgcgct
     2341 ggcgtttcca gaccggcagg gtgcgcgcga tacctacctc cacatcggtc atggccgccg
     2401 ggacgtgttc gggccaggga tcgccgcccg catcctctgg cggggccaga atctcttcgg
     2461 tggccttggt ccagcgttcg cggacgaggt cggccagcgc cgtggccgcc ggcccgtcca
     2521 ccagcatcat cacctcgtgg cgcggcgggt ggtagtcctg gtccggcatg atccggcgct
     2581 ggtcgtcgtc gcggtgcccg gcggtgtccc agcggtcgac gctgatgtcg ccgccgccgc
     2641 agaaggccac gcgatcgtcg atcaccagca ccttctggtg gtggcaggcc ccgaacggca
     2701 cctggtcgtc gagccggaac ttgaccgggg tgttcttgaa ccacgcccgc gccttgtgcg
     2761 ggaagaactc ctgctgggcg gcgatcggga aggccgagcg ccagatcaac aggcgcacgt
     2821 cgagctcggg cttcgcgcag gcgagttcca ccaggatgcg gcccacctcg tcggggtcgt
     2881 cagggccgtc atagccgtcc gggaacagcc gcgtgcgcgg atcgaacccc cagcccagca
     2941 ggagcaccga gcggcgggcc ttctgcaggg cgtcgaagac ggcggcgaaa taggcctcgg
     3001 tatcgaccag gaaggccgcc cggtccgccc gcgccgtacg ccagcaggta tcgcccgctc
     3061 tgagcaacga gggcctgaga accgaggtca aaccgtcacg aacccttcca cgcgccccac
     3121 ggcctccgat cgacgaaagg cctgcggcta aggttgggtt cccctcactc gttctgcaag
     3181 ggaggctctt tctgcaagag ggatcaatcc gcaagaagaa gcgcgccgtc tggggaacgg
     3241 cgcgccggca gaaaatcagc cgagttgggg caattgccta atgggccgtc gaggcgttct
     3301 tgccggccga ggcgctggcc tgggcgccgc cgagataggc cgtgcagggc ccgttcagtt
     3361 cggcgctgag ccggtctcgg gaatcggtgt ggctggcctc tttcttccca cggctgagct
     3421 cttcctggcc cctggaatag atggcttcga ctcggctgcg gccctcggtc ttgatcaggg
     3481 cgtcgaggcc ggcgatgtcg ccggagccca gcccctcggc caggcctcgg cagcggttgg
     3541 ccttcagata gtccacgtcg gtgagatggt cggaggctgt ggcggcgccg gcgacggcca
     3601 ggccgatcac ggcgagaagg atggcggcgg tcttcatgtc taaatctccc tcaaaacagt
     3661 ccccgcgttg aaattgccgc cataactgcg ataactcaaa tgaattagaa gcaatgaaca
     3721 gtatttaatg ttacgtctgc tgatacgtta ctttaatctc gcatgtgact acaatttact
     3781 tgtccgccag ccgcgaggac tggcatgaag ggccatggcc atgccaaccc ctgtgctgga
     3841 cgccgcgggc gtcaacgcgc tgctgcgcaa ggcctttccg gacgccacgc cggccgcctt
     3901 cccggaggtg accctggtct cgcccggccg ggtgaaggtg gtcgcaccct atcgcgaggg
     3961 cctgctgcgt cccggcgggg tgatctccgg cccgacgctg atgtcgctgt cggacaccgc
     4021 ggcctacgcc cttgtcctgg cgcacatcgg cgaccaactg atggcggtga cctcgtccct
     4081 gaccatgaac ttcctgcgcg gcgcgaaacc cggcgacctt cacgccgagg ccgaaatgct
     4141 ccggctcggc cggcgcaacg ccgtctgcga cgtgcgcctg tggaccgaga gccccgaccg
     4201 tctggcggcg caggccatcg tcacctacgc tatcccgcaa tgagcccgcc aattcgcgac
     4261 gaagacgccg ccccgccttc aggcccaccc agggcgatcg ccacgccctg catcaaggtc
     4321 tgcgtcgtcg acggcgagag cgggctctgc atgggttgct accgacagct ctccgaagtg
     4381 gccggctggc agcgcctgac cgacggggat cgggcccgga tcatggccga gctgccgggg
     4441 cgccgcagcc ggatccgccc ggaaaaactg gccatgtttg gttaagctag tgtgctggat
     4501 ttgaagttcg ccgcgttcag ggccgagctc cgagcgaact tcaaatccaa aaaaacacac
     4561 tagaaacata ggcttgctag cgtcctcgtc gattccgaag ttcgtccggc gcctgccgcg
     4621 agcgcttgcg aacttcgaaa tcaggacact aggtcgttca cggcttctaa aacccccggt
     4681 cttaacctag ccggccagtg acaggcccaa ctcggtcgcc gtcaggtcag gatttccgtg
     4741 tcgaacgtct ggaagttcgt cttcgtcatc ttcgtcgccg gggtctccgg cctggtcagc
     4801 gcccaggccg tagtgacggt ggccgaccgc gacccggtgt tgcgcgcggc caacgcccag
     4861 gccgccatct cccaggccaa cgccgaggcc gcgcaagggg gcgtccgcgc cgccatcccc
     4921 aagtccagcg acggccacta ctgggctgac ggccaggtga acggcgccag cgtccgcttc
     4981 ctggtggaca ccggggcgag cgccgtgtcg ctcacccccg acgacgcgcg ccggctgggc
     5041 ttcgacaccg ccgcgctaag ctattccagc cgggtgacca ccgccgccgg ccaggcgcgt
     5101 gcggcgtccg tgaagctcgc cagcctgacg gtgtccggcg cccggctcga aaacgtcgac
     5161 gccctggtga tcgaaaaggg tctcgatacg tccctgctcg gcatgaccta cctaggccgc
     5221 ctcgccagct tccaggcgac gcgccaggcg ctggtcctgc agccctagag ccttctcctc
     5281 ggacggctcg tcccctagcc gggaggatac ggcggcaagc gccgcgtcca cgacctccag
     5341 acccgcaccg ggcttgacgc tctccacggt cagaatccgc cgccaggtcc tcgcgcctcg
     5401 cgccccgtga tagaggccaa gcatgtgccg ggtcatggcc gccagatggg tccccgccgc
     5461 cagctcgcgg gcgatgtagg gacggtagcg cgcgacggcc tcgcccgggg tgacgacctc
     5521 gctcccgccg aacagccggg cgtccacttc gcccagcagg cccggcgtgt gataggccgc
     5581 gcgccccagc atcacgccgt ccacatgcgc cagatgcgcc ttggcctcct ccagcgagcc
     5641 gatcccgccg ttgatgacga tggtcagctc cggccgctcg gccttcaggc gccagaccag
     5701 cggatagtcg agcgggggca cgtcgcggtt ctccttcggc gacaggccct tcagcagagc
     5761 ctttcgggcg tggaccacaa agtggcggac gcccgccgcc gcgcagaggt cgaccaggcg
     5821 gaacaggctc tcagccggct cctggtcgtc gaccccgatg cggcatttca cggtcaccgg
     5881 gaccttcacc gccgcgccca tggccgccat gcagtcggcc accagttccg gctcgcgcat
     5941 caggcaggcg ccgaagcggc ccgactgcac ccggtccgac ggacagccga cgttgaggtt
     6001 gatctcgtca tagccctcgg cctcgccgat ccgggcggcc tccaccaggt ccgccgcctc
     6061 cgagccaccc agctgcagcg ccactggatg ttccgcggcg tcgaagctca gcagccgccg
     6121 ccggtcccca tgcaggatcg cgccggtcgt cagcatctcg gtgtagagca cggcgcgcgc
     6181 gctcaaggtc cgatgcagga cccggcaatg ccggtccgtc cagtccatca ggggggccac
     6241 acagaatcta tgtgcttgat attgcgtcac ttttcctcta agtttcagta tgttgtcggc
     6301 ggtagcgtgc aagcgatttt acgacgtttt acgcccca
//
LOCUS       DATAJL010000837         7520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98827,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000837 DATAJL010000000
VERSION     DATAJL010000837.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7520
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98827"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(7..798)
                     /locus_tag="VHN39_15920"
     CDS             complement(7..798)
                     /locus_tag="VHN39_15920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-hand domain-containing protein"
                     /protein_id="HEX2817880.1"
                     /translation="MRRQIGVLVLALGLTGVAAQPGAAQPKLSGPAAAGYTQLFMSPC
                     GEPYRGKPGDPYPAVLWFKQADLNHDGVIDLKEFRADHEGFFDALDADGNGVLDGPEL
                     TFYERQVAPDVFTPERLSQLVHPELALASLDRRDGARLILVQQWLPGLQQGPEGGHPG
                     EEKGYNPDAAGAAKGPLSDLGASRRQRKELVAAAPFGLLAEAEPVRAADTDLDGRVTK
                     AEFLAAADRRFKALDKRKDGKLTLDELPMTAWQAAAEKGRGKNRG"
     gene            complement(926..1645)
                     /locus_tag="VHN39_15925"
     CDS             complement(926..1645)
                     /locus_tag="VHN39_15925"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047689 - aspartate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HEX2817881.1"
                     /translation="MSESPPKTSLVLGVLGGMGPAATLVFLQQLQAFTPAKGDQDHIR
                     VIADINPKVPDRNAPGSTAGAVLAEMAGALAGAGAEVLAIPCNTAHAYAGLIQRASGL
                     PLIDLIETGASAARDLGARRVGVLGTKGALRLYREYLAAQAMGLVSLDAERQEAFMAT
                     IYKIKGGDLGLGVRKEMAGYAADLIAGGAEAVIAGCTEAPLVMGPADVRVAFIDPGEL
                     LARRCVAVCLGLEPIPALPSV"
     gene            complement(1645..2679)
                     /locus_tag="VHN39_15930"
     CDS             complement(1645..2679)
                     /locus_tag="VHN39_15930"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HEX2817882.1"
                     /translation="MHLARFNPLRFAHLPTPLEPLPRLTEALSTSPDSSGRGGGGPNL
                     WIKRDDCTGLAGGGNKTRKLEYLLGDALANEATTLVTQGAVQSNHVRQTVAAACRFGL
                     ECEIILEERTGSNAIDYTQSGNVLLDELMGAKIRRVPGGTDMNEQLALVAAEVAARGG
                     RPYVIPGGGSNIIGALGYVECALELVTQANEMGLEIDRIVTATGSAGTHAGLVAGIAV
                     MGADIPILGIGVRAPKAAQEANVFKLAVETAALLGHEDRVTRDMVVANCDYVGAGYGL
                     VDEEVIEALKLAARTDAILLDPVYTGKAMKGLIALSRAGQFDGETVVFLHTGGAQGLF
                     GYQSVLDGHL"
     gene            complement(2770..3258)
                     /locus_tag="VHN39_15935"
     CDS             complement(2770..3258)
                     /locus_tag="VHN39_15935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817883.1"
                     /translation="MKRLVLAGAAALALGSAATAAETTQTDRSCFWTRNIHNHTTDGK
                     HTLYFNVGDRSVYRVQTADSCLAAASSTDPVTIQTHGAGGQVCEALDLNLEVRGARCI
                     VESLTKLTRQETDALPKDLQPLGRLSMQPMQPAGTVLTDVRASRSGQAGVVMGIGKRG
                     GP"
     gene            complement(3298..3687)
                     /locus_tag="VHN39_15940"
     CDS             complement(3298..3687)
                     /locus_tag="VHN39_15940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817884.1"
                     /translation="MTRLVLVSLAALAAASAFSASAQPAATQSSSSAAKCFFTRDLRN
                     HTVGDDHTLYFDVGGRSVYRVTTSDNCLAGATSSDPIVLRDRASTGQICNALDWDISV
                     HGARCIVSGMSVLTPEEKAALPRRVRP"
     gene            complement(3705..4091)
                     /locus_tag="VHN39_15945"
     CDS             complement(3705..4091)
                     /locus_tag="VHN39_15945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817885.1"
                     /translation="MKPLVLVSLTALASAMAALAMASAAAARPASEDTCFLTRDLRGH
                     TVGTDGHTLYLGVNGTDVYQVTTSNNCLTHLTGSDPIVLKDRGLGKICNPMDLELRAR
                     GTQCFIGKLTKMTSAEASALPKRLQP"
     gene            complement(4246..5067)
                     /locus_tag="VHN39_15950"
     CDS             complement(4246..5067)
                     /locus_tag="VHN39_15950"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEX2817886.1"
                     /translation="MGKLDTGTEDLLADLDGGVLTLTLNRPQARNAMSDAMNQALGRQ
                     LAAAELDPEVRCVVLTGAGPGFCAGGDVKGMADRNASGGRSVSIDEAIHTQRVNQRAT
                     AGRLFKMPKPTLAALPGAAAGAGMSLALACDLRIMARSAFMTTAFARVGLAGDYGGTY
                     FLTQLVGAAKARELYYLSERVSAEDALRLGLANWVVEADELAARTKEVARRLAAGPAV
                     CFRYMKENLNRAMGGEVDECLDLEATHHVHSASTADHREAAKAFVEKREPVFQGR"
     gene            5223..5987
                     /locus_tag="VHN39_15955"
     CDS             5223..5987
                     /locus_tag="VHN39_15955"
                     /inference="COORDINATES: protein motif:HMM:NF024859.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2817887.1"
                     /translation="MTMRLRQIALVGKDLDAAEADIRAILGLDYAYDDPGVGKFGLKN
                     AVFPIGETFLEVVSPRQAGTTAGRLLEKRGGDGGYMVILQVHDIAEARAGIAAAGARV
                     VEQADLQGGTVAMSHVHPKDVGGAILSLDYMHPWTRWEWGGPVWREHVRTDVSTGIVG
                     AELQGDDPVAMARRWGQVLGREAEPVGEYWRIGLDDGGELRFVKADDGRGDGLGRFDV
                     AVRDPAAVHAAAKARDRVAPDGDVILSGTRVRLVQA"
     gene            complement(6002..6151)
                     /locus_tag="VHN39_15960"
     CDS             complement(6002..6151)
                     /locus_tag="VHN39_15960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817888.1"
                     /translation="MKLLVLVGVIVAGMSSCGASRVADPSPRAIACSHAAAGHHARLG
                     TTIAP"
     gene            complement(6310..>7520)
                     /locus_tag="VHN39_15965"
     CDS             complement(6310..>7520)
                     /locus_tag="VHN39_15965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2817889.1"
                     /translation="ILGFAKITRDITERLRAQRTLEQARQALFQSQKLDAIGQLTGGI
                     AHDFNNLLMAVLGSLELLRKRLPPDPKAAALLDNAVLGAQRGAALTQRMLAFARKQEL
                     KVEGVDIHSLVEGMRGLLERSIGPSIELRVRLAAEVAPVFTDANQLEVALLNLAVNAR
                     DAMPAGGLLTIEATNAVVDETSDLGLPPGPYVRLSVVDEGEGMDERTLARATEPFFTT
                     KGIGKGTGLGLPMVHGLAEQSGGRLALYSQPGEGTRIELWLPQADEARTIMAASDTLR
                     CEARAAASLTVLAVDDDELVLTNTAAMLEDLGHRVIVASSAEAALKALARHGVDLVIT
                     DYAMPHITGLALAKQIATRHPDLPVVLATGYAELPPGEGEALPRLAKPYGQAELVQVL
                     EAVCPAVAQA"
BASE COUNT         1048 a         2676 c         2612 g         1184 t
ORIGIN      
        1 aggcggttag ccccggtttt tgccgcggcc cttttccgcc gccgcctgcc aggcggtcat
       61 cggcagttcg tccagcgtca gcttgccgtc cttgcgcttg tccaaggcct tgaagcggcg
      121 gtcggcggcg gccaggaatt cggccttggt gacccgtccg tcgaggtcgg tgtcggcggc
      181 ccgcaccggc tcagcctcgg ccagcaggcc gaagggcgcg gcggccacca gttccttccg
      241 ctgccggcgg ctggcgccca ggtcggacag cgggcccttg gctgcgccgg cggcgtcggg
      301 gttgtagccc ttctcctcgc cgggatgacc gccctccgga ccctgctgca ggccaggcag
      361 ccactgctgc acaaggatca gcctggcccc atcgcgtctg tccagggacg ccagggcgag
      421 ctcgggatgc acgagctggc tgagccgctc gggcgtgaag acgtcgggcg ccacctgccg
      481 ctcgtaaaaa gtcagttccg gtccgtcgag caccccgttg ccgtcggcgt cgagggcgtc
      541 gaagaagccc tcgtggtcgg cccggaactc cttcaggtcg atcaccccgt cgtggttcag
      601 gtcggcttgt ttgaaccaca ggaccgctgg ataggggtcg cccggcttgc cgcgataggg
      661 ttcgccgcag ggactcatga agagctgggt gtagccggcc gccgccggcc cgctgagctt
      721 cggctgcgcc gcgccgggct gcgccgccac gccggtcagg cccagggcca ggaccaagac
      781 gcctatttgt ctgcgcatca acgccatccc cgcaccaaat ccgaaaggcc ttttagaccc
      841 aaactgcgtc gcaagggcgc ccggactgtt acatccgcga cattgggcct cgccaaaccg
      901 gggggcctgg ccaaaccggc cctcgtcaga cggacgggag cgccgggatc ggctccaggc
      961 ccaggcacac cgccacgcag cgccgggcca ggagctcgcc cgggtcgatg aaggccaccc
     1021 tgacgtcggc aggccccatc accagcggcg cctcggtgca gccggcgatc accgcctcgg
     1081 ccccgccggc gatcaggtcg gcggcatagc ccgccatctc cttgcgcacg cctaagccca
     1141 ggtcgccgcc cttgatcttg tagatcgtgg ccatgaacgc ctcctgccgc tcggcgtcga
     1201 ggctcaccag ccccatggcc tgagccgcca gatattcgcg gtagagccga agcgcgccct
     1261 tggtgccgag cacgcccacc cggcgcgcgc cgaggtcgcg ggcggcgctt gcgcccgtct
     1321 cgatcaggtc gatcagcggc aggccgctcg cccgctggat caggcccgcg taggcgtggg
     1381 cggtgttgca ggggatcgcc agcacctcgg ccccggcgcc ggccagcgcg ccggccattt
     1441 cggccaggac cgcgcctgcg gtggagcccg gcgcgttgcg gtctgggacc ttgggattga
     1501 tgtcggcgat cacccggatg tggtcctggt cgcccttggc cggcgtgaag gcttgcagct
     1561 gctgcaggaa caccagcgtc gccgccgggc ccatcccgcc cagcacgcca aggacgagcg
     1621 aggtcttggg cgggctctcg gacactagag gtggccgtcc aggaccgact gatagccgaa
     1681 caggccctgg gccccgccgg tgtgcaggaa gaccaccgtc tccccgtcga actggccggc
     1741 cctggagagc gcgatcagcc ccttcatcgc cttgccggta tagaccgggt ccagaaggat
     1801 cgcatcggtg cgcgcggcca gcttcagggc ctcgatcacc tcctcgtcga ccaggccata
     1861 gcccgcgccc acgtagtcgc agttggccac caccatgtcg cgggtcaccc ggtcctcgtg
     1921 gccgagcagg gccgcggtct ccaccgccag cttgaagaca ttggcctcct gggccgcctt
     1981 cggcgcgcgc acgccgatgc ccaggatcgg gatgtcggcg cccatcaccg cgatgccggc
     2041 caccaggccc gcatgcgtcc cggcgctgcc ggtggcggtg acgatgcggt cgatctccag
     2101 ccccatctca ttggcctggg tcaccagctc cagcgcgcac tccacatagc ccagcgcccc
     2161 gatgatgttg gagccgccgc ccgggatcac ataaggccgc ccgccgcggg ccgcgacctc
     2221 ggcggccacc agggcgagct gttcgttcat gtcggtcccg ccgggcacgc ggcggatctt
     2281 cgcgcccatc agttcgtcca gcaggacgtt gccggactgg gtgtagtcga tggcgttgga
     2341 gccggtgcgc tcctccagga tgatctcgca ctccaggccg aagcggcagg ccgccgccac
     2401 ggtctggcgc acgtggttcg actgcaccgc cccctgcgtc accagggtcg tggcctcatt
     2461 ggccagcgca tcgcccagca ggtactccag cttgcgggtc ttgttgccgc cgccggccag
     2521 gcccgtgcag tcgtcgcgct tgatccacag gttcggcccg cctccccctc ttcctgaaga
     2581 atcgggcgag gtcgagagcg cctcggttag ccgcggcagc ggctccagcg gcgtgggcag
     2641 atgggcgaag cgaagcggat tgaagcgggc gaggtgcatc ccccgcgctt acatcgaact
     2701 tgaccctggg gacaccccta ggcgctcagg cgggcaagaa tcccccccac cgcccacgcc
     2761 cggttccggc tacggcccgc cgcgcttgcc gatccccatg accacgccgg cctggccgct
     2821 gcgggacgcc ctgacgtccg tgagcacggt ccccgccggc tgcatcggct gcatcgaaag
     2881 ccggcccagc ggctgcaggt ccttgggcag ggcgtcggtt tcctgccggg ttagcttcgt
     2941 caggctctcg acgatgcagc gcgcgccgcg aacttccaga ttgaggtcga gagcctcgca
     3001 gacctgtccc ccggctccgt gcgtctggat cgtcaccgga tcggtggagg acgcggccgc
     3061 taggcagctg tcggcggtct gcacgcggta gaccgaccgg tcgccgacgt tgaagtagag
     3121 cgtgtgcttg ccgtcggtgg tgtggttgtg gatgttacgc gtccagaagc acgacctgtc
     3181 cgtctgggtc gtctccgccg cggtcgccgc cgaacccaga gccagcgccg ccgcgcccgc
     3241 cagaacaagt cgcttcatcg ccgttcctcc cgaacccgaa ttgctgtcgc gcgccgtcta
     3301 cggccggacg cgccgcggca gcgccgcctt ttcctcaggc gtcaagacgc tcatgccgga
     3361 gacgatgcag cgggcgccgt gcacgctgat gtcccagtcc agcgcgttgc agatctgtcc
     3421 ggtggacgcc cggtcgcgca ggacgatcgg gtccgacgag gtggcgccgg ccaggcagtt
     3481 gtcgctggtc gtcacccgat agacgctgcg gccccccacg tcgaaataga gggtgtggtc
     3541 gtcgcccacc gtgtggttgc gcaggtcgcg ggtgaagaag cacttcgccg cagatgacga
     3601 ggactgggtc gccgccggct gcgccgaggc cgaaaaggcg ctcgccgccg ccagggccgc
     3661 caaactcacc agaacaagac gcgtcatgat cgtttctccg gggttcaggg ctgcaggcgc
     3721 ttgggtaggg cgctcgcctc ggccgatgtc atcttggtca acttgccgat gaagcactgc
     3781 gttccgcgcg cccgaagctc caggtccatc gggttgcaga tcttgccaag accccggtcc
     3841 ttcaggacga tcggatcgga gccggtgagg tgcgtcaggc agttgttgct cgtcgtcacc
     3901 tgataaacgt cggtcccgtt gacgcctaga tagagcgtgt ggccgtcggt tcccaccgtg
     3961 tggccgcgca ggtcgcgcgt caggaaacag gtgtcctcag atgcgggcct ggccgccgcg
     4021 gccgatgcca tcgccagggc ggccatcgcg ctcgccagag ccgtgaggct cacaagaaca
     4081 agaggtttca tggtcctaat ctccagactg catggtccca cccgcgagcc aatctagcac
     4141 gccgggggtt ggtccggcga ggccgcccac ggcgcggccc tctcgtagat gccgggtttg
     4201 ccgcgatcgg ttcaggcggg tcctgaacgg gccggccgct cgctcctagc ggccctggaa
     4261 caccggctcg cgtttttcca cgaaggcctt ggccgcctcg cgatggtcgg cggtcgaggc
     4321 tgagtgcacg tggtgcgtcg cctccaggtc caggcactcg tcgacctcgc cgcccatggc
     4381 gcggttgagg ttctccttca tgtagcggaa gcagacggcg gggcccgcgg ccagccgccg
     4441 ggccacctcc ttcgtcctgg ccgccagctc gtcggcctcg accacccagt tggcgaggcc
     4501 caggcgcagc gcatcctcgg cgctcacccg ttcggagagg tagtagagct cgcgcgcctt
     4561 ggccgccccc accagctggg tcaggaaata ggtcccgcca tagtcgccgg ccaggccgac
     4621 ccgggcgaag gccgtggtca tgaaggctga cctggccatg atccgcaggt cgcaggcgag
     4681 cgccagcgac atccctgcgc ctgccgccgc gccgggcagg gcggcgaggg tgggcttggg
     4741 catcttgaac agccgccccg cggtggcccg ctggttgacc cgctgggtgt ggatcgcctc
     4801 gtcgatgctg accgagcgtc cgccagacgc attgcggtcg gccatgccct tcacgtcgcc
     4861 accggcgcag aaacccggcc ccgcgccggt cagcaccacg cagcgcacct ccgggtccag
     4921 ctcggccgcg gccagctgcc ggcccagcgc ctggttcatg gcgtcgctca tggcgttgcg
     4981 cgcctgcggc cggttcagcg tgagggtcag cacgcctccg tccaggtcgg ccagcaggtc
     5041 ttcggttccg gtgtcgagct tgcccatgtc gatgttctcc cgttttgccc aaaccctgag
     5101 cccagaccct aggccctgac cagcccggta tggaagcggg ggggtatgga agcgggggaa
     5161 cggaagcccg gcttgacctt cctcgggcgc gagccgttag ctttgcggaa aagcgggaga
     5221 ggatgaccat gcgccttcga cagatcgccc tggtgggcaa ggatctcgac gccgccgagg
     5281 ccgacatccg cgccatcctc ggtctcgact acgcctatga cgacccggga gtcggcaagt
     5341 tcgggttgaa gaacgcggtc ttccccatcg gcgagacctt cctcgaagtc gtctcgcccc
     5401 ggcaggcggg cacgacggcc gggcgcctcc tggaaaaacg cggcggcgac ggcggctaca
     5461 tggtcatcct gcaggttcac gatatcgccg aggcccgcgc cgggatcgcg gcggccggcg
     5521 cccgggtcgt cgaacaggcc gacctgcagg gcggcacggt cgccatgagc cacgtccacc
     5581 ccaaggacgt gggcggggcg atcctgtcgc tggactacat gcacccctgg acgcgttggg
     5641 agtggggcgg cccggtctgg cgcgagcacg tccgcaccga cgtctccacc ggcatcgtcg
     5701 gcgccgagct gcagggcgac gacccggtcg ccatggccag gcgctggggt caggtgcttg
     5761 gccgcgaggc ggagccggtg ggcgaatact ggcgcatcgg cctcgacgac ggtggggagc
     5821 tccgcttcgt gaaggccgac gacggccgcg gtgacggcct cggccgcttc gacgtggcgg
     5881 tgcgcgaccc cgccgccgtc cacgccgcgg ccaaggcccg ggaccgcgtg gcgcccgacg
     5941 gcgatgtcat cctctcaggg acgcgggtgc gtctggtcca ggcctgatcc cgcgcttggc
     6001 gtcagggggc gatggtcgtc cccaggcggg cgtggtggcc ggccgccgcg tggctgcagg
     6061 cgatggcgcg cggtgacggg tcggcgaccc tgctcgcgcc gcagctcgac attccggcga
     6121 cgatcacacc aacgaggaca agaagcttca tggtcgttcc tccgtggttg cccccacggc
     6181 aacctagcac gtccgcgccg ctttcggtgg gggcgtccga acaccttccg ttgaacgcgg
     6241 ctctgtgttt tccgtggttc cccccgcctg ctacgggcct aacctgccgc tctcctcggg
     6301 gggccgccct caggcctgcg ccacggcagg acacacggcc tccagcacct ggaccagctc
     6361 ggcctggccg tagggtttgg ccagacgcgg caaggcctcg ccctccccgg gcggcagctc
     6421 ggcgtagccg gtggccagca ccaccggaag gtccggatga cgggtcgcga tctgtttggc
     6481 cagggccagg ccggtgatgt gcggcatggc gtagtcggtg atcaccaggt ccaccccgtg
     6541 gcgcgccagg gccttgagcg cggcctccgc cgaggacgcc acgatcaccc gatggccgag
     6601 gtcctcgagc atggccgcgg tgttggtcaa taccagttcg tcgtcgtcga cggccaggac
     6661 ggtgaggctg gcggccgccc tggcttcgca ccgcagggtg tccgacgcgg ccatgatggt
     6721 ccgggcctcg tcggcctgcg gcagccacag ctcgatccgc gtgccttcgc ccggctggct
     6781 gtagagcgcc aggcgtccgc cggactgttc cgcaagcccg tggaccatgg gcaggccgag
     6841 gcccgtgccc ttgccgatgc ccttggtggt gaaaaagggc tccgtggccc gcgcgagggt
     6901 ccgctcgtcc atgccctcgc cctcgtcgac gactgacagg cggacatagg gtccaggcgg
     6961 caggccgagg tccgaggtct cgtcgaccac agcattcgtc gcctcgatgg tcaggaggcc
     7021 gccggcgggc atggcgtcgc gggcgtttac cgccaggttc agcagcgcca cttccagctg
     7081 gttggcgtcg gtgaacaccg gcgcgacctc ggcggcaagg cggacgcgca gctcgatcga
     7141 cggcccgatc gatcgttcca gcaggccgcg catgccctcg accaggctgt ggatgtcgac
     7201 gccctcgacc ttcagttcct gcttgcgggc gaaggccagc atgcgctggg tgagcgccgc
     7261 gccgcgctgg gcgcccagca cggcgttgtc cagcagggcc gcggccttgg ggtcgggcgg
     7321 cagccgcttg cgcagcagtt ccaggctgcc cagcaccgcc atcagaaggt tgttgaagtc
     7381 gtgggcgatg ccgccggtga gctggccgat ggcgtccagc ttctgcgact gaaacagcgc
     7441 ctggcgcgcc tgctccaggg tgcgctgcgc ccgcaaccgc tcggtgatgt cgcgggtgat
     7501 cttggcgaag ccgaggatct
//
LOCUS       DATAJL010000838         3136 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86001,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000838 DATAJL010000000
VERSION     DATAJL010000838.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86001"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..819
                     /locus_tag="VHN39_15970"
     CDS             <1..819
                     /locus_tag="VHN39_15970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase"
                     /protein_id="HEX2817890.1"
                     /translation="REGQAVAAVSAGNTGALMAISKLILRMCADLERPALVTSIPTPH
                     GMATFLDVGANIDCDAERLVEFAIMGEAYHRAAHGVPRPTVGLLNVGSEEMKGHEEVR
                     EANRVLREGKLDLDYRGFVEGDDITRGSVDVIVTDGFTGNVTLKAMEGAARFINAELR
                     AALTSGLMATLGYFLARPALLKFRERLSPTPAAPLLGLNGIVLKCHGGASDRDFAMAL
                     RLAVDLARSDFSAEIERNMRRLPDALAEPAPAPADAPASNGASPLGVGPLGAGE"
     gene            816..1796
                     /locus_tag="VHN39_15975"
     CDS             816..1796
                     /locus_tag="VHN39_15975"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEX2817891.1"
                     /translation="MTSVLRSVVTGVGGYLPERVVTNDDLAKFVDTSDEWIVERTGIR
                     QRHQAPDDQPVSDLAVAAARRALAAAGRTPEDIDLIIVATTTGDLTFPAVATIVQRKL
                     GCPVGVAFDVQAVCSGFVYALSVADGFTARGRSKCALVIGAETMTRLMDWTDRGTCVL
                     FGDGAGAVVLEPMAGEGTTADRGLLGFALRADGTKQELLFVDGGVSTNGQVGKLRMQG
                     NQVFRHAVVNISEAVTAAAADAGIEVASVDWFVPHQANLRILQGVARRLGIDEAKVIT
                     TLDQHANTSAASIPLALDQGVRDGRIKPGQMLLLEAMGGGLTWGACVLRL"
     gene            1970..2272
                     /locus_tag="VHN39_15980"
     CDS             1970..2272
                     /locus_tag="VHN39_15980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HEX2817892.1"
                     /translation="MKGATVTRADLCEAVHEEVGLTRQDCGELVERVLELMAVALEKG
                     QQVKLSGFGVFQVRAKRARMGRNPKTGEPAAIEPRRVIGFRASQVMKARVDKALAR"
     gene            2288..2677
                     /locus_tag="VHN39_15985"
     CDS             2288..2677
                     /locus_tag="VHN39_15985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEX2817893.1"
                     /translation="MAKGPEAFRTISEAADELSVPQHVLRFWETKFAFIRPMKRAGGR
                     RFYRPSDIAVLRGVRRLLHDEGYTIKGVQRLHREEGLRRLVSAGGAGAASAVPSHAPA
                     VSVGHDGLYEALRDLETAKQRLDALLR"
     gene            complement(2712..2788)
                     /locus_tag="VHN39_15990"
     tRNA            complement(2712..2788)
                     /locus_tag="VHN39_15990"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2752..2754),aa:Pro,seq:ggg)
     gene            complement(2849..3046)
                     /locus_tag="VHN39_15995"
     CDS             complement(2849..3046)
                     /locus_tag="VHN39_15995"
                     /inference="COORDINATES: protein motif:HMM:NF022456.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2842 domain-containing protein"
                     /protein_id="HEX2817894.1"
                     /translation="MNPRLRKLIGLVGILAFILFYLGVVMRLSDYVPAHGPLQFAFYA
                     LAGVCWGIPILPLISWMNRGR"
BASE COUNT          506 a         1049 c         1102 g          479 t
ORIGIN      
        1 cgcgagggcc aggccgtggc cgcggtctcc gccggcaaca ccggcgcgct gatggcgatc
       61 tccaagctga tcctcaggat gtgcgccgac ctggagcgcc cggccctggt gaccagcatc
      121 ccgacgccgc acgggatggc caccttcctc gacgtgggcg ccaacatcga ctgcgacgcc
      181 gagcggttgg tggagttcgc catcatgggc gaggcctatc accgcgccgc tcacggggtg
      241 cccagaccca cggtcggcct cttgaacgtc ggctccgagg agatgaaggg ccacgaggag
      301 gtgcgcgagg ccaaccgcgt gttgcgcgag ggcaagctcg acctggacta ccggggattc
      361 gtggagggcg atgacatcac ccgcggctcg gtggacgtca tcgtcaccga cggcttcacc
      421 ggcaatgtga cgctgaaggc catggagggg gcggcccggt tcatcaacgc cgagctgcgc
      481 gcggccctga cctctggcct gatggccacc ctgggctact tcctggcccg cccggcgctg
      541 ctcaagttcc gggagcgctt gagcccgacg ccggccgcgc cgctgctggg actgaacggc
      601 attgtcctca agtgccacgg cggggccagc gaccgggact tcgccatggc cctgcgcctg
      661 gcggtcgatt tggcgcgcag cgacttctcc gccgagatcg aacggaatat gagacggctc
      721 cccgacgcgc tggccgagcc tgcgccggcg cccgccgacg cgcccgcgtc gaacggcgcc
      781 agccctctag gagttggccc tctaggagct ggtgagtgac gagcgtgctg cggagcgtgg
      841 tgaccggggt tggcggctac ctgcctgagc gggtggtgac caacgacgac ctggccaagt
      901 tcgtcgacac ctccgatgag tggatcgtcg agcgcaccgg catccgccag cgccaccagg
      961 cgccagacga ccagccggtc tccgatctgg cggtggccgc cgcgcgaagg gcgctggcgg
     1021 cagcgggccg cacccccgaa gacatcgacc tgatcatcgt ggccaccacc accggcgacc
     1081 tgaccttccc ggcggtcgcc accatcgtgc agcgcaagct gggctgtccg gtgggtgtcg
     1141 ccttcgacgt ccaggcagtc tgctcaggtt tcgtctacgc gctgtcggtg gccgacggct
     1201 tcacggctcg cgggcgatcc aagtgcgccc tggtgatcgg ggccgagacc atgacgcggc
     1261 tgatggactg gaccgaccgc ggcacctgcg tgctgttcgg cgacggcgcc ggcgccgtgg
     1321 tgctggaacc catggccggc gaggggacca ccgccgatcg tggcctgctg ggctttgcgc
     1381 tccgggctga cgggaccaag caggagctgc tgttcgtcga cggcggcgtc tccaccaacg
     1441 ggcaggttgg caaactgcgg atgcagggca atcaggtgtt ccgtcacgcc gtggtcaaca
     1501 tctccgaagc ggtgacggcc gcggccgccg acgccggcat cgaggtcgcc agcgtcgact
     1561 ggttcgtgcc gcaccaggcc aatttgcgca tcctgcaggg cgtggcgcga cggttgggca
     1621 tcgatgaggc caaggtgatc accacgctgg atcagcacgc caacacctca gccgcctcga
     1681 tcccgctggc gctggaccag ggggtccgcg acgggcgcat caaacctggg cagatgctgc
     1741 ttctggaagc catgggcggg ggtctgacct ggggcgcctg cgtgcttcgc ctctgaagcg
     1801 cgagcgcttc agattgtttg ctggtcgctc ttcctgatcg gcgaagcgcc tatgcgtcgc
     1861 cgggaaacgc tcaggcttca cggattccgc caatgtcacg cttgaagtct ttgacgcatt
     1921 aggacaatca aggcacggtg acgctactgg accgggggac ttggctggca tgaagggcgc
     1981 gacagtaacg cgggcggacc tctgcgaagc ggtccatgag gaagtgggcc tgacccgcca
     2041 ggattgcggc gagctggtcg agcgtgtcct cgaactgatg gccgtggccc tggagaaggg
     2101 ccaacaggtc aagctttccg gcttcggcgt cttccaggtg cgcgccaaac gcgcccgcat
     2161 gggccgcaac cccaagaccg gggaacccgc cgccatcgag ccgcgccggg tgatcggctt
     2221 ccgcgcctcg caggtcatga aagcccgcgt cgacaaggcg ctggcgcggt gaggacggct
     2281 taagaccgtg gccaagggcc ccgaagcctt tcggacgatc tccgaagcgg cggacgagct
     2341 cagcgtgccg caacacgtcc tgcggttctg ggaaaccaag ttcgccttca tccggccgat
     2401 gaagcgcgcc ggtggccgcc gattctatcg cccctctgac atcgcggtgc tccgcggcgt
     2461 acgccgcctg ctccacgacg agggctacac catcaagggc gtccagcgcc tgcaccgcga
     2521 ggaaggcttg cgccggctgg tcagcgccgg cggggctggc gcggcgtcgg cggttccgag
     2581 ccacgccccg gccgtcagcg tcggtcacga tgggctctac gaggcgctcc gcgacctcga
     2641 aaccgccaaa cagcggctcg acgcgcttct aagatgagat gagaccctaa gggggaagtc
     2701 tcgccggcga atggtcggag cgacaggatt tgaacctgcg accccttgac ccccagtcaa
     2761 gtgcgctacc aggctgcgct acgctccgac gcctcgcggc gagcgggtct tctagcggct
     2821 tggggcatcc gggcaagcct aaaacgcctc aacgcccccg gttcatccag ctgatcaatg
     2881 gcaggatggg gatgccccag cagacgccgg ccagcgcgta gaaggcgaac tgcagcgggc
     2941 cgtgggccgg gacatagtcc gacaggcgca tgacgacgcc caggtagaag aggatgaagg
     3001 ccaggatccc gacgaggccg atcagtttgc gcaggcgggg gttcatcggc gctgcttagc
     3061 cgccctgagc gccgggcgga agcgtggacg ggggcggcta tccgggttag gccgcgcccg
     3121 atgacctcgt ttctgc
//
LOCUS       DATAJL010000839         2794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_72407,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000839 DATAJL010000000
VERSION     DATAJL010000839.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72407"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1772
                     /locus_tag="VHN39_16000"
     CDS             <1..1772
                     /locus_tag="VHN39_16000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2817895.1"
                     /translation="IVSSMVLSVIVALILSPALAATLLKRPGEEHHSGNALDRALTKF
                     GGRFNTWFNRTADRYQRGVAWVISKMRVAMIVYAVFFVVLVVVFLRLPTSFLPAEDQG
                     IAQLQFTLPPGATMSRTLAAVKQVEAYFLTKEKDNVAAVYDVLGQSQQGAGQNAGRGF
                     ISFSPWDKRKGADNTSQAITLRATKALGGQLRDAQFFALNPPPVRGLGQSSGFTMEFL
                     NSGGLSRQQFKAEMNQLLAEARNDPVLTGIRQNSLDDNPTLDVNIDEEKVGALGIPQA
                     QVDQTLTVAWGGDYVDDFVDRNRVKRVFVQADAQYRSRPEDLANWFVRSANGEMAPFS
                     AFSQITWAQAPSTLGRFNGVPNYEIQGDSAAGKSSGEAMDRIAAIAAKLPGTEIAWSG
                     LSYQERLSGGQAPVLYAISLLVVFLCLAALYESWSVPFSVMLVIPLGLLGAALAVAAR
                     GLQNDVYFQVGLLTTMGLSAKDAILIVEFAEGAERRGKKPYDAAIEAARLRLRPILMT
                     SLAFIFGVLPLAISTGAGAQSRIAIGTAVIGGMLTATVLAIFFVPMFFVMVRMVFRNR
                     HADHHRAAEQVLAAGEVPEEKPA"
     gene            1769..>2794
                     /locus_tag="VHN39_16005"
     CDS             1769..>2794
                     /locus_tag="VHN39_16005"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX2817896.1"
                     /translation="MRKLIAVLLSGVALTGCTLEPAYLRPTPAVPQTWPVGAAYPTTQ
                     AAPLPSVSYRDVFKDPHLQAIIVRAIANNQDLQVAMANVVIARSQYRVQRAELLPRIE
                     ATGGASESHGKVTVVQPNGVVATPRETTRSYQADVGFSAFELDLFGRIRSLTHAAQQQ
                     YFASEAGVHQARLTLVAEVADAYLTLGTDRSLLAIAKDTAASASKTVELTQARLSGGI
                     APRTDLRLAQTVLEQANSDLANLTTIVAQDRNALELLVGAQVADADLPASIEAVDGFL
                     AEAPAGLDSRILLRRPDVVQAEYRLRAANAQIGAARANFFPTIDLTVLAGAASPALGA
                     LFNGRNFN"
BASE COUNT          432 a         1042 c          880 g          440 t
ORIGIN      
        1 ccatcgtctc ctccatggtg ctttcggtca tcgtcgccct gatcctgtcg ccggcgctcg
       61 ccgccaccct gctcaagcgg ccgggcgaag agcaccacag cggcaatgcc ctggacaggg
      121 cgctcaccaa gttcggcggg cgcttcaaca cctggttcaa ccgcaccgct gaccgttacc
      181 aacgcggcgt ggcgtgggtg atctcgaaga tgcgcgtcgc catgatcgtc tacgccgtgt
      241 tcttcgtggt cctggtggtc gtgttcctgc gcctgcccac cagcttcctg ccggccgagg
      301 accagggcat cgcccagctg cagttcaccc tgccgcccgg cgccaccatg tcccgcacgc
      361 tcgcggccgt gaaacaggtc gaggcctatt tcctcaccaa ggaaaaggac aatgtcgcgg
      421 cggtctacga cgtgctgggg caaagccaac agggcgcggg tcagaacgcc ggccgcggct
      481 tcatctcatt ctcgccctgg gacaagcgca agggcgcgga taacacctct caggccatca
      541 ccctgcgcgc caccaaggcc ttgggcggcc aactgcggga tgcgcagttc ttcgccctca
      601 acccgccgcc ggtccgcggc ctcggccaat cgagcggctt caccatggag tttctgaact
      661 ccggcggcct cagccgtcag cagttcaagg ccgagatgaa ccagttgctg gccgaggcgc
      721 gcaatgaccc ggtgctcacc gggattcggc agaactccct cgacgacaac ccgaccctgg
      781 acgtcaatat cgacgaggag aaggtcggcg cgctgggcat cccccaggcc caggtcgatc
      841 agacccttac cgtcgcctgg ggcggcgact acgtggacga cttcgtcgac cgtaaccgcg
      901 tgaagcgggt ctttgtgcag gctgacgcgc agtaccgcag ccggcccgag gacctcgcca
      961 actggttcgt ccgctcggcg aacggcgaga tggcgccctt ctccgccttc tcgcagatca
     1021 cctgggccca ggcgcccagc acgctcggcc gcttcaacgg ggtgcccaac tacgagatcc
     1081 agggcgactc cgccgcgggc aagagctccg gcgaggccat ggaccgcatc gccgcgatcg
     1141 ccgcgaaact gccgggcact gagatcgcct ggagtggcct ttcctatcag gagcggctct
     1201 cgggcggcca ggcgccggtg ctctatgcga tctcgctgct ggtcgtgttc ctgtgcctgg
     1261 ccgcgctcta cgagagttgg tcggtgccgt tctcggtgat gctggtgatc cctctgggcc
     1321 tcctgggcgc ggccctggcg gtggcggcgc ggggcctgca gaacgacgtc tatttccagg
     1381 tcggcctgct caccaccatg ggcctgtcgg cgaaggacgc gatcctgatc gtcgagttcg
     1441 cggaaggcgc ggagcgacga ggtaagaagc cttatgacgc cgcgatcgag gcggcgcgcc
     1501 tgcgcctacg gccgatcctg atgaccagcc tcgccttcat cttcggcgtg ctgccgctgg
     1561 cgatctccac cggcgccggc gcccagagtc gcatcgccat cggcaccgct gtgatcggcg
     1621 gcatgctgac ggccaccgtg ctggcgatct tcttcgtgcc gatgttcttc gtgatggtgc
     1681 ggatggtctt ccgcaaccgc cacgccgatc accaccgcgc cgccgagcag gtcctcgccg
     1741 ccggcgaagt cccggaagag aaaccggcat gaggaagctc atcgccgtcc tcctgagcgg
     1801 ggtggcgctc accggctgca cgctggagcc ggcctacctg cgcccgacgc cagctgtgcc
     1861 gcagacatgg ccggtgggcg cggcctatcc gacgacccag gccgcgcccc tcccctcggt
     1921 cagctaccgc gacgtcttca aggacccgca cctgcaggcg atcatcgtgc gcgcgatcgc
     1981 caacaaccag gacctgcagg tggccatggc caatgtggtc atcgcccgct cacagtaccg
     2041 ggtgcagcgc gccgagctgc tgccgcgcat cgaggccacc ggcggggcct cggagtccca
     2101 cggcaaggtc accgtcgtcc agcccaacgg cgtcgtcgcc accccgcgcg agacgacccg
     2161 cagttatcag gccgacgtcg gcttcagcgc cttcgaactc gacctcttcg gccgcatccg
     2221 ctcgctcacc cacgcggccc agcagcagta tttcgccagc gaggccgggg tgcatcaggc
     2281 gcgcctgacc ctggtcgccg aagtggccga cgcctacctc accctcggca ccgaccgcag
     2341 cctcctggcc atcgccaagg acaccgccgc cagcgcctcc aagaccgtcg agctgaccca
     2401 ggcccggctc agcggcggca ttgcgccgcg caccgacctg cgcctggccc agaccgttct
     2461 ggagcaggcc aactccgacc tggccaatct gaccaccatc gtggcccagg accgcaacgc
     2521 acttgagctc ctggtcggcg cccaggtggc cgacgccgac cttccagcct ccatcgaggc
     2581 cgtcgacggc ttcctggccg aggcgcccgc cgggctggat tcgcggatcc tgctgcgccg
     2641 gcccgacgtg gtgcaggccg aataccgact ccgcgccgcc aacgcccaga tcggcgcggc
     2701 gcgggcgaac ttcttcccga ccatcgacct gaccgtcctg gccggcgccg ccagcccggc
     2761 gcttggcgcg ctcttcaacg gcaggaactt caac
//
LOCUS       DATAJL010000840         5460 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86108,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000840 DATAJL010000000
VERSION     DATAJL010000840.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5460
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86108"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..614
                     /locus_tag="VHN39_16010"
     CDS             <1..614
                     /locus_tag="VHN39_16010"
                     /EC_number="1.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004365 - glyceraldehyde-3-phosphate
                     dehydrogenase (NAD+) (phosphorylating) activity [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEX2817897.1"
                     /translation="YGVNHDGLTADDLVISNASCTTNCLAPVARVLQDLCGIERGYMT
                     TIHSYTGDQPTLDTLHKDLYRGRAAAMSMIPTSTGAAKALGLVIPELKGKLDGSSIRV
                     PTPNVSVVDLTFVPGKAVSVEEINAAMEKAAASGPLSGILAVTKEPLVSHDFNHIAAS
                     STVALPQTQMIDGGLGRVLSWYDNEWGFSTRMIDVAVAMGKLL"
     gene            633..959
                     /locus_tag="VHN39_16015"
     CDS             633..959
                     /locus_tag="VHN39_16015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817898.1"
                     /translation="MSRWIGSALVWICAPLAGVAAINLPFFVFFLVDSQYRPTLLAHA
                     ALPIVAALFLIVWAGLVWRLARLHSGRARQVHVILSCVLAMAGSALAFVGGHAKQDSV
                     TVERIR"
     gene            970..2160
                     /locus_tag="VHN39_16020"
     CDS             970..2160
                     /locus_tag="VHN39_16020"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEX2817899.1"
                     /translation="MSFQTLDKADLQGKRALVRVDFNVPMEDGKVTDDTRLRAAVPTI
                     EELRKGGAKVILLAHFDRPKGKPVPSMSLKPIVEPLSKVLGYPVAFAADCIGPKAREA
                     VNAMQPGDVLLLENVRFHPGEEANDRKFADALAANGDLYVNDAFSAAHRAHASTEALA
                     HRLPAYAGEQMRLELDALDRALGHPERPVLGIVGGSKVSTKLDLLRHLVTKLDKLAIG
                     GGMANTFLYAQGHDVGASYCEKELAETARDVIRLAGQNNCKLFLPLDIVVAEKLAPGA
                     PARVRDVGSVDDDERILDAGPETIERLCRAMANSKTLVWNGPLGVFEMPPFDKGTVEA
                     ARYAAKLVREGKLVAVAGGGDTVAALNAAGVVDDFTFVSTAGGAFLEWMEGKTLPGVA
                     ALSR"
     gene            2175..3260
                     /gene="fba"
                     /locus_tag="VHN39_16025"
     CDS             2175..3260
                     /gene="fba"
                     /locus_tag="VHN39_16025"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518732.1"
                     /note="catalyzes the reversible aldol condensation of
                     dihydroxyacetonephosphate and glyceraldehyde 3-phosphate
                     in the Calvin cycle, glycolysis, and/or gluconeogenesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEX2817900.1"
                     /translation="MARITLRQLLDHAAEHSYGVPAFNINNMEQGLAIMEAADSVDAP
                     VIIQASRGARSYANDIVLKHLIDALAEMYPHIPICMHQDHGNNEATCATAIQFGFTSV
                     MMDGSLKADGKTPADYDYNVAVTKAVCDMAHWVGASVEGELGVLGSLETGMGEKEDGH
                     GFEGKLGHDQLLTDPAQAVEFVKTTQVDALAIAMGTSHGAYKFTRAPDGDVLAMKVIE
                     EIHSRLPNTHLVMHGSSSVPQELQDIINKYGGEMPATWGVPIAEIQRGIKHGVRKINI
                     DTDNRMAMTGAIRQVFAENPGEFDPRKYLKPAMDAMRAVCRQRFEEFGTAGWASKITP
                     LSMTTMAKRYAAGELAPKIGITRQAAE"
     gene            complement(3264..4919)
                     /locus_tag="VHN39_16030"
     CDS             complement(3264..4919)
                     /locus_tag="VHN39_16030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817901.1"
                     /translation="MTAAVDAGVPARGSNRLVIAGASVGTVFEWYDFYLYASLLTLIT
                     EHFFSSVNATTGYIFALLAFAAGFAVRPFGAIIFGRLGDLWGRKNTFLVTMTLMGLAT
                     FVVGLLPDYAQIGVIAPVSLIGMRLIQGLALGGEYGGAATYVAEHAPEGKRGLYTSWI
                     QTTATFGLFLSLIVIIVVRTRLGEDAFKAWGWRIPFLASALLLMVSLWIRLRLNESPV
                     FQQMVDDGTTSKAPLTESFARWPNLKLVLLALVGLTAGQAVVWYTGQFYTQVFLEKIL
                     KVDGVLTNELVAVSLLLGTPFFIFFGWLSDKIGRKPIIMTGCLLAVLTYFPIFKAITV
                     AANPALGAASASAPVTVVADPASCAFQFDPVGKKTFASSCDLAKGALATAGVSYANQA
                     APAGSVAEVHIGAVVIPSLKGEALTPADLKTQKTAWTKTLGAALKTAGYPAKADPAKM
                     DKVKLVGLLWLLVLYVTMVYGPIAAALVEMFPARIRYTSMSLPYHVGNGWFGGFLPTT
                     AFAMVAATGNIYYGLWYPVAVAAVTFVVGLLFIKEMRGAKIEG"
     gene            complement(4977..>5460)
                     /locus_tag="VHN39_16035"
     CDS             complement(4977..>5460)
                     /locus_tag="VHN39_16035"
                     /inference="COORDINATES: protein motif:HMM:NF015060.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TspO/MBR family protein"
                     /protein_id="HEX2817902.1"
                     /translation="IGLGLTVGAVAVSALVARMNAPEEEVYEIYSDYEEPVLVEAKPP
                     SRIFATLWPPLFMALTLSGLRIWNAPRSAARTQALTLWGTVQALNAVWMALGPRRLGG
                     QLAAAIASLGTAGAYVWRARQVDTPAANLVAPYVGWIGFANVLSEGLGRRAPEPETLH
                     "
BASE COUNT          962 a         1864 c         1820 g          814 t
ORIGIN      
        1 tctacggggt gaaccacgac ggcctgaccg ccgacgacct ggtgatctcc aacgcgtcgt
       61 gcaccaccaa ctgcctggcg ccggtggccc gcgtgctgca ggacctctgc ggcatcgagc
      121 gtggctacat gaccacgatc cattcctaca ccggcgacca gccgacgctg gatacgctgc
      181 acaaggacct ctaccgcggc cgcgctgcgg ccatgtcgat gatcccgacc tccaccggcg
      241 cggccaaggc gctgggcctc gtcatccccg agctgaaggg caaactcgac ggctcctcga
      301 tccgcgtgcc gacgcccaac gtctcagtgg tcgacctgac cttcgtgccc ggcaaggcgg
      361 tgagcgtgga agagatcaac gcggccatgg aaaaggcggc cgcctccggc cccctgtcgg
      421 gcatcctggc ggtgaccaag gagccgctgg tcagccacga cttcaaccac attgccgcgt
      481 cctccaccgt ggccctgccg cagacccaga tgatcgacgg cgggcttggc cgggtgctct
      541 cctggtacga caacgagtgg ggcttctcga cgcggatgat cgatgtcgcc gtcgccatgg
      601 gcaagctgct ctaggggcgg ttgaaaccga tcatgtcccg ctggatcggc tccgctctcg
      661 tctggatctg cgcccctcta gcgggggtcg cggcgatcaa cctgccgttc ttcgtcttct
      721 tcctggtcga cagccaatac cggcccaccc tcctggcgca cgcggctctg ccgatcgtgg
      781 cggcgctgtt tctcatcgtc tgggccggcc tggtctggcg gctcgctcga cttcactcgg
      841 gacgcgcccg acaggtgcat gtgatcctgt cgtgcgtgct ggccatggcg ggaagcgcgc
      901 tggcattcgt cgggggccac gcgaaacagg acagcgtgac cgtcgagcgg attcgctgag
      961 ggaatatgaa tgagcttcca gaccctcgac aaggctgatc tccagggcaa gcgggcgctg
     1021 gtgcgcgtgg atttcaacgt gcccatggag gacggaaagg tcaccgacga cacccgcctg
     1081 cgcgccgcgg tcccgaccat cgaggaactg cgcaagggcg gcgccaaggt gatcctgctg
     1141 gcccacttcg accggcccaa gggcaagccc gtgccgagca tgagcctgaa gcccatcgtc
     1201 gagccgctct cgaaggtgct cggctacccg gtggcgttcg ccgcggactg catcgggccg
     1261 aaggcgcgcg aggcggtgaa cgccatgcag cccggcgacg tgctgttgct ggaaaacgtc
     1321 cgcttccacc cgggcgagga ggccaatgac cgcaagttcg ccgacgcgct ggcggccaac
     1381 ggcgacctct acgtcaacga cgccttctcc gccgcacacc gggcgcacgc ctccaccgag
     1441 gctttggccc atcgcctgcc ggcctacgcg ggcgagcaga tgcgcctgga gctggatgcg
     1501 ctcgaccggg cgcttgggca tccggaacgg ccggtgctgg ggatcgtcgg cggctccaag
     1561 gtctccacca agctcgacct gctgcgccat ctggtgacca agctcgacaa actcgccatc
     1621 ggcggcggaa tggccaacac cttcctctac gcccagggcc acgacgtcgg cgcctcctac
     1681 tgcgagaagg agctggccga gaccgcgcgc gacgtgatcc gtctggccgg ccagaacaac
     1741 tgcaagctct tcctgccgct ggatatcgtc gtggccgaga aactggcgcc cggcgccccg
     1801 gcccgcgtgc gcgacgtggg ctcggtggac gacgacgagc ggatcctcga cgcagggccg
     1861 gagaccatcg agcgcctgtg ccgcgccatg gccaattcca agaccctggt ctggaacgga
     1921 cccctggggg tcttcgagat gccgcccttc gacaagggca ccgtggaggc cgcccgctac
     1981 gccgccaaac tggtccgcga gggcaagctg gtggcggtgg ccggcggcgg tgatacggta
     2041 gcggccctga atgcggcggg cgtcgtggac gacttcacct tcgtctccac ggcgggcggc
     2101 gcgtttcttg aatggatgga gggcaaaacc ctgcccggcg tggcggcttt gtcccgatag
     2161 agagcgacta gaccatggcc cgtatcactc tgcgacagct tctcgatcac gccgccgagc
     2221 acagctatgg cgtgccggcc ttcaacatca acaacatgga acagggtctg gcgatcatgg
     2281 aggcggcgga ctccgtcgac gcgccggtga tcatccaggc cagccgcggg gcgcggtcct
     2341 acgccaacga catcgtgctg aagcacctga tcgacgccct ggcggagatg tatccgcaca
     2401 tcccgatctg catgcaccag gaccatggga acaacgaggc gacctgcgcc acggcgatcc
     2461 agttcggctt tacctcggtg atgatggacg gctcgctgaa ggccgacggc aagacgcccg
     2521 ccgactacga ttacaatgtc gccgtcacca aggcggtctg cgacatggcc cattgggtcg
     2581 gcgccagcgt cgagggcgag ctcggcgtgc tgggcagcct cgagaccggc atgggcgaga
     2641 aggaggacgg ccacggcttc gagggcaagc tcggccacga ccagttgctc accgaccccg
     2701 cccaggccgt ggagttcgtg aagaccaccc aggtggacgc actggccatc gccatgggca
     2761 ccagccacgg cgcctacaag ttcacccggg cgccggatgg ggacgtcctg gccatgaagg
     2821 tgatcgagga gatccacagc cgcctgccca acacccacct ggtgatgcac ggctcgtcct
     2881 cggtgccgca ggagctacag gacatcatca acaagtacgg cggcgagatg ccggccacct
     2941 ggggcgtgcc gatcgccgag atccagcgcg gcatcaagca cggcgtgcgc aagatcaaca
     3001 tcgacaccga caaccgcatg gccatgaccg gcgccatccg ccaagtgttc gccgagaacc
     3061 ccggcgaatt cgacccgcgc aagtatctga agcccgccat ggacgccatg cgcgcggtct
     3121 gccgccagcg cttcgaggaa ttcggcacgg ccggctgggc gagcaagatc acgcccttgt
     3181 cgatgaccac catggccaag cgttacgccg ccggtgaact ggcccccaag atcggcatca
     3241 cccgccaggc ggcggagtaa gggtcacccc tcgatcttcg cgccgcgcat ctccttgatg
     3301 aacagcaggc cgaccacgaa ggttaccgcg gcgaccgcca ccgggtacca gaggccgtag
     3361 tagatgttgc cggtggccgc gaccatggcg aaggccgtgg tcggcaggaa gccgccgaac
     3421 cagccgttgc ccacgtgata aggcaggctc atcgaggtgt agcgaatccg ggccgggaac
     3481 atctccacga gcgcggctgc gatcggcccg tagaccatgg tcacgtagag cacgagcagc
     3541 cagagcaggc ccaccagctt gaccttgtcc atcttggcgg ggtccgcctt ggcgggatag
     3601 ccggcggtct tcagcgccgc gccgagggtc ttggtccagg cggtcttctg ggtcttcagg
     3661 tcggcaggcg tcagcgcttc gcccttgagg ctcgggatga ccaccgcacc gatgtggacc
     3721 tccgccacgg agcccgccgg ggccgcttgg ttcgcgtagc tgacgccggc ggtggcgagc
     3781 gcgcccttcg ccaggtcgca ggacgaggcg aaggtcttct tgccgacggg gtcgaactgg
     3841 aaggcgcaac tggccgggtc ggccaccacc gtcacgggcg ccgaggcgct ggcggcaccc
     3901 agcgcaggat tggcggccac cgtgatcgcc ttgaagatcg ggaaataggt cagcaccgcc
     3961 agcaggcagc ccgtcatgat gatcggcttg cgaccaatct tgtccgacag ccagccgaaa
     4021 aagatgaaaa acggcgtgcc gagcaggagc gacacggcga ccagttcgtt ggtcaggacg
     4081 ccgtcgacct tcaggatctt ttccaggaag acctgggtgt agaactggcc ggtgtaccag
     4141 accaccgcct ggccggcggt gaggccgacc agcgccagca gcaccagctt caggttcggc
     4201 caacgcgcga agctctcggt gaggggcgcc ttcgaggtcg tcccatcgtc gaccatctgc
     4261 tggaacaccg ggctctcgtt gagccgcagc ctgatccaca gcgacaccat caggagcagg
     4321 gccgaggcca ggaacgggat gcgccagccc caggccttga aggcgtcctc gccgagcctg
     4381 gtgcgcacca cgatgatgac gatcaggctg aggaacaggc cgaaggtggc cgtggtctgg
     4441 atccagctgg tgtagaggcc gcgcttgccc tccggcgcgt gctcggcgac gtaggtggcc
     4501 gccccgccgt actcgccgcc cagcgccagg ccctggatca gccgcatgcc gatcaggctc
     4561 accggggcga tcacgccgat ctgcgcgtag tcgggcaaaa ggcccaccac gaaggtcgcc
     4621 aggcccatga gcgtcatggt cacgaggaag gtgttcttgc ggccccagag gtcgcccagg
     4681 cgtccgaaga tgatcgcccc gaagggtcgg accgcgaagc ccgctgcgaa ggccaggagc
     4741 gcgaagatgt agccggtggt ggcgttgacg ctggagaaga agtgctcggt gatcagggtg
     4801 agcagcgagg cgtagaggta gaagtcatac cactcgaaga ccgtgcccac cgaggcgccg
     4861 gcgatcacca gcctgttgga cccacgcgcc ggaactccgg cgtccactgc cgctgtcatc
     4921 gtttcgctcc cacccttgtt ctttgagggg agcctatggc gaagccggcg gtccggctag
     4981 tgcagcgtct ccggctccgg cgcccggcgc ccgagcccct cgctcagcac attggcgaag
     5041 ccgatccagc ccacgtaggg ggccaccaga ttggcggccg gcgtatcgac ctggcgggcg
     5101 cgccagacgt aggcgccggc ggtgcccaaa gaggctatcg ccgcggcgag ctggccgccc
     5161 agccggcggg gacccagcgc catccagacg gcgttcagcg cctggaccgt accccagagc
     5221 gtcagcgcct gtgtgcgggc cgcgctcctg ggcgcattcc agatgcgcag acccgagagc
     5281 gtcagcgcca tgaacagcgg cggccaaagc gtggcgaaaa tccgcgacgg cggcttggct
     5341 tccaccagca ccggctcttc gtagtccgag tagatctcgt agacctcttc ctccggcgca
     5401 ttcatccgcg ccaccagggc cgagaccgcc acggcgccaa ccgtcaggcc cagtccgatc
//
LOCUS       DATAJL010000841         1701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_98985,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000841 DATAJL010000000
VERSION     DATAJL010000841.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_98985"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..275)
                     /locus_tag="VHN39_16040"
     CDS             complement(<1..275)
                     /locus_tag="VHN39_16040"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006274266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0009231 - riboflavin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEX2817903.1"
                     /translation="MDKIAHLEKDENITRVVKALEELRKGRMVILVDDADRENEGDLV
                     LAAQFVTPEAINFMAKHARGLICLSLTEQQVKRLGLTMMVSENQSTYS"
     gene            complement(290..877)
                     /locus_tag="VHN39_16045"
     CDS             complement(290..877)
                     /locus_tag="VHN39_16045"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEX2817904.1"
                     /translation="MFTGLIEDLGAVAAVTPVPQGMRLLVRTRLTGLTHGASIAVDGA
                     CLTAIELPEGAFAADLSAETLQRTTLGALKPGDPVNLERPLALGDRLGGHMVLGHVDG
                     VGQIVARETVGNGERVTLKLPEGLAKYVVEKGSIALDGISLTVNSLKGLDEIELFIIP
                     ETLRATTWGAKPVGAKVNVEADILGKHVARLLQFR"
     gene            956..>1701
                     /locus_tag="VHN39_16050"
     CDS             956..>1701
                     /locus_tag="VHN39_16050"
                     /inference="COORDINATES: protein motif:HMM:NF042645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6600 domain-containing protein"
                     /protein_id="HEX2817905.1"
                     /translation="MIGTSGSALALAAFLAAAGVITARPALAQEDVESPGEEMAPPPP
                     PIEDDSQPPQPQQQAQQQGAFAPPAQEPTEQQFDQSLSQYGRWVDTPEYGRVWVPAGV
                     GQDWQPYTDGQWVDTSYGWSFQASVPWGWAAYHYGRWGWRGNLGWYWVPGYRWAPAWV
                     AWRHVNGYAAWSPLAPHGYVYGRTWPGWVVVPHAHFTAPIRRWAVPSNRVGVIVRAAR
                     PVQGFGSVRFARPVQRGVVVVPNRHVEQHR"
BASE COUNT          261 a          565 c          574 g          301 t
ORIGIN      
        1 gagtaggtgc tctggttctc gctcaccatc atggtgagcc ccagccgttt cacctgctgc
       61 tcggtcaggc tcaggcagat gaggccacgg gcgtgtttcg ccatgaagtt gatggcctca
      121 ggcgtgacga actgcgcggc cagcaccagg tcgccttcgt tctcgcggtc ggcatcgtcg
      181 acgaggatga ccatgcgccc cttgcgcagc tcctcgagcg ccttgacgac gcgggtgatg
      241 ttctcgtcct tctccaagtg ggcgatcttg tccattgaca ggctctccat cagcggaatt
      301 gtaagaggcg ggcgacgtgc ttgccgagga tatctgcctc gacgttcacc ttcgccccca
      361 cgggctttgc gccccaggtc gtggcccgca gcgtctcggg gatgatgaaa agctcgatct
      421 catcgaggcc cttcagcgaa ttcaccgtca gcgagatgcc gtcgagcgcg atcgagccct
      481 tctcgaccac gtacttcgcg agaccttccg gcagcttcaa ggtaacccgc tcgccgttgc
      541 cgaccgtttc gcgcgcgacg atctgcccga cgccgtcgac gtggcccaaa accatgtggc
      601 cgccgagcct gtctccgagc gcgagcggcc tttccaagtt gaccggatcg cccggcttga
      661 gcgctcccag cgtagtccgc tgcagggtct cggcgctgag gtcggccgca aaagcgcctt
      721 cggggagttc gatggccgtg agacaggcgc cgtccaccgc gatgctcgcg ccatgggtga
      781 gaccggtcag ccgcgtgcgc accaggagcc gcatcccttg cgggacgggc gtaacggcgg
      841 ccacggcgcc caaatcctct atcagcccgg taaacatctt gagccgcgct acctacacca
      901 tttaagtccc ggaggtgaat tgagtaagct ggcccggcat ccaaggagca tgtcgatgat
      961 tggtacatcc ggaagcgcgc tggcgctggc ggcgttcctg gccgcggcgg gcgtcatcac
     1021 cgcaaggccg gccttggcgc aggaagacgt cgaatcgcca ggcgaggaaa tggccccgcc
     1081 gccgccgccc atcgaagacg actcccagcc accgcaacca cagcaacagg cgcagcagca
     1141 gggggcgttc gcgccgcctg cgcaggagcc gacggagcag cagttcgatc aatctctttc
     1201 gcagtatggc cggtgggtgg acacgccgga gtatggccgc gtctgggtgc ccgcgggcgt
     1261 cggtcaggac tggcagccgt acaccgacgg ccagtgggtc gacacgtcgt acggttggtc
     1321 gttccaggcc agcgttccct ggggctgggc cgcgtatcac tacggccgct ggggatggcg
     1381 cggcaacctg ggctggtatt gggttccggg ctatcgctgg gctccggcgt gggtggcctg
     1441 gcgccacgtg aacggctacg cggcctggtc gccgctcgcg ccgcacggat atgtctatgg
     1501 ccgcacctgg ccgggctggg tggtggtgcc gcacgcgcac ttcacggcgc cgattcgccg
     1561 ctgggcagtg ccgtccaacc gtgtcggcgt gatcgtgcga gccgcccggc cggtgcaagg
     1621 attcggttcg gtgcgctttg cccggcccgt ccagcgcggc gtggtggtgg tgccgaatcg
     1681 ccacgtcgag cagcaccgcc a
//
LOCUS       DATAJL010000842         2989 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_123210,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000842 DATAJL010000000
VERSION     DATAJL010000842.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123210"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VHN39_16055"
     CDS             <1..526
                     /locus_tag="VHN39_16055"
                     /inference="COORDINATES: protein motif:HMM:NF040005.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF6134 family protein"
                     /protein_id="HEX2817906.1"
                     /translation="KTLTFAVFRNGSKIGEHHVVFSGEGGTLTASTDATMTVKIGPVP
                     VFKYHHRALERRNDGMFASLETTTTTNGKDEHVTAERTGGGIRVDCTYGKATLAADAN
                     PMTHWNPQIFGGTPLFNPQTGKMLKVKTARVAPNHVTIRGEAEIDDFYDEAGAWQALT
                     GKLDDGSKVEYRRV"
     gene            642..1961
                     /locus_tag="VHN39_16060"
     CDS             642..1961
                     /locus_tag="VHN39_16060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2817907.1"
                     /translation="MTATIDPPAAVEGETDLAQREAEYEKFVWDNLKRNYLGNYLHGM
                     LGMTGFRLVNTPTFLPAYLHMVSGSNGIVGLGLALQQVGGVISPIFGASKVEHRTKVM
                     PAAMWMGGLARMAVLGIALSGWLFKGNVLVGSILGFMLMFGIFMGAQRVVFSLLMAKV
                     IPISRRGRLQAWRNFTGSVIAAAMAYLAGRYFIGPNLFGNGYGTTFIFAFILTSLGLS
                     ALQMLLKEPEPPTTRTQGRFRDRLREFPRLITEDRAYAWFLVVQMLSASARIATPFYI
                     LYVGSSVHMTGKLLGLLSMAYIGADALSNLVWGYLGDKTGFRLVLLFSLAAWAASTFL
                     LIEIHSAWAVFLAFFGLGAGQAGYNMAAQTMILEFGARDDLPMRIAVSATAESITATL
                     APLIGGQVADLFGYNVVFGLSIGVLAAGLLLLIVAVKEPRTARLAAL"
     gene            2030..2908
                     /locus_tag="VHN39_16065"
     CDS             2030..2908
                     /locus_tag="VHN39_16065"
                     /inference="COORDINATES: protein motif:HMM:NF039197.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5694 domain-containing protein"
                     /protein_id="HEX2817908.1"
                     /translation="MQRRDLLAAALATALCAPAAQTLAGPEVPFPLISQRPAAERPAL
                     MVVGVAHFDNPSRDVVNTKVDDVLAPQRQKQIAAIVDQLAKFHPTHIAVEYPATKQEK
                     LDARYAAYRAGSYKLTRDETDQLGLRLAAKLGLPRVDAVDWLDEPPGKDEDYDFQAYP
                     ATSEAKARLAAISDPKLGERESAKLHALTLGGYLLYLNSPTHLAGMNSVYFDYAMLGD
                     DQKAPGANWVGSWHMRNLRIFAKLARVADKPSDRVLVIYGAGHGFLLNEFARQSNAFK
                     VVSPEPLLAAAAARPR"
BASE COUNT          482 a         1049 c          954 g          504 t
ORIGIN      
        1 caagaccctg accttcgcgg tgttccgcaa cggctccaag atcggcgagc atcacgtggt
       61 cttctctggc gaaggcggga cgctgaccgc ctccacagac gccaccatga ccgtcaagat
      121 cggtccggtg ccggtgttca agtaccacca ccgcgcgctg gagaggcgca acgacgggat
      181 gttcgcctcg ctggagacca ccaccaccac caacggcaag gacgagcatg tgaccgccga
      241 gcggaccggc ggcggcatcc gcgtcgactg cacctacggc aaggccacac tcgccgccga
      301 cgccaatccg atgacccact ggaatccgca gatcttcggc ggcacgccgc tcttcaaccc
      361 gcagaccggc aagatgctga aggtcaagac cgccagggtc gcgcccaacc acgtgaccat
      421 ccgcggcgag gcggagatcg acgacttcta cgacgaggcc ggcgcctggc aggcgctgac
      481 cggcaagctc gacgacggct cgaaggtcga ataccgccgg gtctgaccgc ggtcttttgc
      541 cctcttcggg gactctgata gaccggcgct attgaacgca tctgtttgtt gaagggcgct
      601 gagggccggc cgcattcgcg ggctgacgct gcgttatcga tttgaccgcg acgattgacc
      661 ccccggccgc tgtagaaggc gagaccgacc tcgcccagcg cgaggccgag tacgagaagt
      721 tcgtctggga caatctcaag cgcaactacc tcggcaacta cctgcacggc atgctgggga
      781 tgaccggctt tcggctggtc aacacgccaa ccttcctgcc ggcctatctg cacatggtct
      841 ccggctccaa cggcatcgtg ggcctggggc tcgccctgca gcaggtgggc ggggtgatct
      901 cgccgatctt cggggccagc aaggtcgagc accgcaccaa ggtgatgccg gcggccatgt
      961 ggatgggcgg cctggcgcgg atggcggtgc tgggcatcgc gctctccgga tggctgttca
     1021 agggcaacgt gctggtgggc tccatcctcg gtttcatgct gatgttcggc atcttcatgg
     1081 gcgcccagcg ggtggtgttc tccctgctga tggccaaggt gatcccgatc agccggcgcg
     1141 gccgcctgca ggcctggcgc aatttcaccg gcagcgtgat cgccgccgcg atggcctatc
     1201 tggccggccg ctatttcatc gggccgaacc tgttcggcaa cggctacggc acgaccttca
     1261 tcttcgcctt catcctgacc agcctgggcc tgtcggcgct gcagatgctg ctgaaggagc
     1321 cggagccgcc gaccacgcgc acccagggac ggttccgcga ccggctgcgc gagttcccgc
     1381 gcctgatcac cgaggaccgc gcctacgcct ggttcctggt ggtgcagatg ctgtcggcct
     1441 ccgcccggat cgcgacgccg ttctacatcc tctacgtcgg ctcctcggtc cacatgaccg
     1501 gcaagctgct gggcctgctc tccatggcct acatcggcgc cgacgcgctc tcgaacctcg
     1561 tctggggcta tctgggcgac aagacgggct ttcgcctggt gctgttgttc tccctcgcgg
     1621 cctgggcggc ctcgacgttc ctgctgatcg agatccacag cgcctgggcg gtgttcctgg
     1681 ccttcttcgg cctgggcgca ggccaggccg gctacaatat ggcagcccag accatgatcc
     1741 tggagttcgg cgcccgcgac gacctgccca tgcgcatcgc ggtctccgcc accgccgaga
     1801 gcatcaccgc caccctcgcc cccctgatcg gcggccaggt cgccgacctc ttcggctaca
     1861 atgtggtctt cggcctatcc atcggggtgc tggcggcggg actgctcctg ctgatcgtcg
     1921 cggtgaagga gccgcgcacc gcgcgcctgg cggcgcttta ggcctctgca cgccaccatg
     1981 aaaaatcggt aacttgatac gtcgcgccct gacgccgcgt catggcgtca tgcaaagacg
     2041 tgacctgctc gccgccgccc ttgccaccgc cctttgcgcg cccgccgcac agaccctcgc
     2101 cgggccggaa gttcccttcc cgctgatcag ccagcgcccc gccgccgagc ggccggcgct
     2161 gatggttgtg ggcgtggcgc acttcgacaa tcccagccgc gacgtggtca acaccaaggt
     2221 cgatgacgtg ctggccccgc agcggcagaa acagatcgcc gccatcgtcg atcagctggc
     2281 gaagtttcat ccgacccaca tcgcggtgga atatccggcg accaagcagg aaaagctcga
     2341 cgcccgctat gccgcctatc gcgccggcag ctacaagcta acccgcgacg agaccgacca
     2401 gctcggtctg cggctcgccg ccaagctggg cctgccccgc gtcgacgcgg tcgactggct
     2461 ggacgagccg ccgggcaagg acgaggatta cgacttccag gcctatccgg ccacgtcgga
     2521 ggccaaagcg cggctcgcgg caatcagtga ccccaagctg ggcgagcgcg aaagcgccaa
     2581 gctgcacgcc ctgacgctgg gcggctatct gctgtacctg aacagcccga cgcatctcgc
     2641 ggggatgaac agcgtctatt tcgactacgc catgctgggc gacgaccaga aggcgccggg
     2701 cgcgaactgg gtcgggtcct ggcacatgcg gaatctgcgc atcttcgcca agctggcgcg
     2761 cgtcgccgac aagccgagcg accgggtgct ggtgatctat ggcgccggcc acggcttcct
     2821 gttgaacgag ttcgcccgcc agtccaatgc cttcaaggtg gtcagccccg agccgttgct
     2881 cgcggcggcg gccgctaggc cgcgatgatc catgtcccca ccgcgctctg ggcccacacg
     2941 gctttcgacc tggcggcctg gggcggaggg ctgggatttt cggctgctc
//
LOCUS       DATAJL010000843         2434 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86234,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000843 DATAJL010000000
VERSION     DATAJL010000843.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86234"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..622)
                     /locus_tag="VHN39_16070"
     CDS             complement(<1..622)
                     /locus_tag="VHN39_16070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2817909.1"
                     /translation="MIVRRQFAAAALALGVLALPLASFGQDAPAAKIKQGALKGAVVE
                     GVEEFWGIPYAAPPVGDLRWKPPAAAAGWTGERDASKAGATCQPTQKGEYTEDCLFAN
                     VTRPAGAKPGAKLPVYVWIHGGGFTIGSAPGAFGAQTDGLQFAKEGIVTVSVSYRLGR
                     AGWFAHPALCKEGPCGNYGYMDQIAALKWVKANIASFGGDPNNVTIG"
     gene            770..>2434
                     /locus_tag="VHN39_16075"
     CDS             770..>2434
                     /locus_tag="VHN39_16075"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF017464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HEX2817910.1"
                     /translation="MLKSATALAVILAFAAGASLGAEPAALKYGAWGFDLTAMDAKTR
                     PGDDFFRYANGAWFDRTAIPGDKPGISLRIYESDLAEARLRAIMEDSAAQIPSGAGHE
                     PKTVEGKVGAFYKAFMDEARADALGAKPIAPELDAIRAAATRDRLGALMGRNVKDFEG
                     SVFGIGLDVDSKDIAHYATYLAQGGLGLPDRDYYLQAAFAEKKAAYQAYVEKLLRLES
                     WPDPAGKAAAIVAFETAIAEASWTKAQERNPDATYNPYTLPELEKAAPGFPWRGFLAE
                     AGLGAPAKVVVVENTALPKIAAIYASTPVEVLQAWMAFNVADNASPYLSKAFADANFE
                     MRLKTLSGQAEQQARWKRGVHAVSGGDYAAGDRFDRFGNFGWAVGQIYTARYFPPAAK
                     AKVQALVADLKTAYRARIEKLDWMSPATRTEALKKLAAYTVKVGYPDKPRDYSRVVIR
                     DDDLVGDVRAAAEADWAFYAGRQSGRVDRGDWGMTPQTNDAYNGSLIDIVFPAVILQP
                     PIFDPGADPAINYGAVGGVIGHELTHGFDDQGRKYDSRGTLRDWWAP"
BASE COUNT          393 a          864 c          809 g          368 t
ORIGIN      
        1 cgccgatggt gacgttgttc gggtcgccgc cgaagctggc gatattggcc ttcacccact
       61 tgagcgccgc gatctggtcc atgtagccgt agttgccgca ggggccttcc ttgcagagcg
      121 ccgggtgggc gaaccagccg gcgcggccca ggcggtagct caccgagacg gtgacgatcc
      181 cttccttggc gaactggagg ccgtcggtct gggctccgaa ggcgccgggc gccgagccga
      241 tcgtgaagcc gcccccatgg atccacacat agaccgggag cttcgcgccc ggctttgcac
      301 cggcagggcg cgtgacgttc gcgaacaggc agtcctcggt atattcgccc ttctgggtcg
      361 gctggcaggt cgcgccggcc ttgctggcgt cgcgctcgcc ggtccagccg gcggcggccg
      421 cgggcggctt ccagcgcagg tcgcctaccg gcggggcggc gtaggggatg ccccagaact
      481 cctcgacgcc ctcgaccacg gcgcccttca gtgcgccctg cttgattttc gcggccggcg
      541 cgtcctgccc aaagctggca agcggcaggg ccagaacgcc taatgcgagc gcggcggcgg
      601 cgaattggcg acgaacgatc atccgtagtc cccccaaagg atttcgccgg tctctaaggc
      661 gcggctgttg cacgattgtg tctcgtaaag ccggtatggg ccagcggctt gaccgcttgg
      721 gcgcgcggtg ttgacctcgc gccggttcaa acccgagggg cgtccgcacg tgctgaaatc
      781 cgcaacggcc ttggccgtca tcctggcctt cgccgctggc gccagcctgg gcgccgagcc
      841 cgccgcgctg aagtatggcg cctggggctt cgacctgacc gcgatggacg ccaagaccag
      901 gcccggcgac gacttcttcc gctacgccaa cggcgcctgg ttcgaccgga ccgccatccc
      961 cggcgacaag cccggcattt ccttgcggat ctacgagagc gacctggccg aggcccgcct
     1021 gcgcgcgatc atggaagact ccgcggccca gataccatct ggggccgggc atgagccgaa
     1081 gaccgtcgag ggcaaggtcg gcgccttcta caaggccttc atggacgagg cccgcgccga
     1141 cgccctgggc gccaaaccca tcgccccgga actcgacgct atccgcgccg cggcgacccg
     1201 cgatcggttg ggcgcgctca tgggccgcaa cgtgaaggac ttcgaaggct cggtcttcgg
     1261 catcggcctc gacgtcgatt ccaaggacat cgcccactac gccacctacc tggcccaggg
     1321 cggcctgggc ctgcccgacc gggactacta cctgcaggcc gccttcgcgg agaagaaggc
     1381 cgcctatcag gcctatgtgg aaaaactgct caggctcgaa agttggcccg atccggccgg
     1441 caaggccgcc gccatcgtgg ccttcgaaac cgccatcgcc gaggcgagct ggacgaaggc
     1501 gcaggagcgc aaccccgacg ccacctacaa tccctacacg cttcccgagc tggaaaaggc
     1561 cgcgcccggc ttcccctggc gcggcttcct cgcggaggcc ggcctcggcg ccccggccaa
     1621 ggtggtggtg gtcgaaaaca ccgcgttgcc aaaaatcgcc gctatctatg cttcgacgcc
     1681 ggtggaagtg ttacaggcgt ggatggcgtt caatgtcgcc gacaacgcct cgccgtacct
     1741 gtccaaggcc ttcgccgacg ccaatttcga gatgcgcctg aagaccctct ccggccaggc
     1801 cgagcagcag gcgcgctgga agcgcggcgt ccatgcggtg agcggcggcg actacgcggc
     1861 cggcgaccgc ttcgaccggt tcggcaactt cggctgggcg gtgggccaga tctacaccgc
     1921 ccgttacttc ccgcccgcgg ccaaggcaaa ggtccaggcg ctggtggccg acctgaagac
     1981 cgcctatcgc gcgcgcatcg aaaagctcga ctggatgagc ccggccaccc gcaccgaggc
     2041 gctgaagaag ctcgccgcct acaccgtcaa ggtgggctac ccggacaagc cgcgcgacta
     2101 ttccagggtg gtgatccgcg acgacgacct ggtgggcgac gtgcgcgccg ccgccgaggc
     2161 cgattgggcc ttctatgccg gccgccagag cggacgcgtc gaccgcggcg actggggcat
     2221 gacgccccag accaacgacg cctacaacgg ctcgctgatc gacatcgtct ttccggccgt
     2281 gatcctacag ccgccgatct tcgatccggg ggcggacccg gcgatcaact atggcgcggt
     2341 cggcggcgtc atcggccacg agctcaccca tggcttcgac gaccagggtc gcaagtacga
     2401 ttccaggggc acgctccgcg actggtgggc cccc
//
LOCUS       DATAJL010000844         1821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_72590,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000844 DATAJL010000000
VERSION     DATAJL010000844.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72590"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1367)
                     /locus_tag="VHN39_16080"
     CDS             complement(<1..1367)
                     /locus_tag="VHN39_16080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEX2817911.1"
                     /translation="MHPSAHARTHPDKPACIMAYSGETVTYGELDARSNQGAHLFRSL
                     GLGTGDSIAFFIDNNPRYYELLWAAQRSGLRFTCLSSKLTTGEVEYIVKDCEAKVFVA
                     SKALSETALAVAPLIPGVALYMVGGEAGPFQSLEDARAGFPTTPIADESAGRAMLYSS
                     GTTGRPKGVKRAGDIDPAIDAASPLANLGQALYGWTPDSIYLSPAPLYHAAPLGWSMA
                     VQSIGGTVVMMERFDAADALRFIEQYKITTAQWVPTHFVRMLKLPPEVRERYDHSSLK
                     SVFHAAAPCPVPVKEQMIAWWGPIVHEYYAGTEGNGFCIINSEEWLAHKGSVGRGLTA
                     AVKICDDEGDPLPPRTEGLVFFEGGGQFEYHGDPAKTAESRNKHGWTTLNDVGWLDEE
                     GYLYLTDRKSFMIISGGVNIYPQELENVLIGHPKVADAAVVGAPDEEMGEKVVAVIQP
                     MDWADA"
     gene            1509..>1821
                     /locus_tag="VHN39_16085"
     CDS             1509..>1821
                     /locus_tag="VHN39_16085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2817912.1"
                     /translation="MAAPTFETLLYAVEDGVATVTLNRPEKLNAFNTQMMNDMIAVFD
                     ETDRDDAVRCVIVTGAGRAFCAGADLSAGAQTFNYDARSAEDRAARQRDGVQRDGGGL
                     LT"
BASE COUNT          283 a          586 c          646 g          306 t
ORIGIN      
        1 gcgtcggccc agtccatcgg ctggatcacg gccacgacct tctcgcccat ctcctcgtcg
       61 ggcgcgccaa ccacggcggc gtcggcgacc tttgggtggc cgatcagaac gttttccagc
      121 tcctgcggat agatgttcac cccgcctgag atgatcatga agctcttgcg gtcggtgagg
      181 tagaggtagc cctcctcgtc gagccagccc acgtcattga gggtcgtcca gccgtgcttg
      241 ttgcggctct cggcggtctt ggccggatcg ccatggtact cgaactgacc gccgccctcg
      301 aaaaacacca gaccctcggt gcggggcggc agggggtcac cctcgtcgtc gcagatcttg
      361 accgccgccg tcaggccgcg gccgaccgaa cccttgtggg ccagccactc ctcggagttg
      421 atgatgcaga agccgttgcc ctcggtgccg gcgtagtact cgtgcacgat cggaccccac
      481 caggcgatca tctgttcctt gaccggcacg gggcagggcg cggcggcgtg gaacaccgac
      541 ttcagcgatg agtggtcata gcgttcgcgc acctccggcg gcagtttcag catgcgcacg
      601 aagtgggtcg ggacccactg ggcggtggtg atcttgtatt gctcgatgaa gcggagcgcg
      661 tctgcggcgt cgaagcgctc catcatgacg accgtgccgc cgatggactg gaccgccatc
      721 gaccagccga gcggggcggc gtgatagagc ggggcgggcg acaggtagat gctgtcgggc
      781 gtccagccgt agagggcctg gccgaggttc gcgagcggtg acgccgcgtc gatggccgga
      841 tcgatgtcgc cggcgcgttt gacgcccttg ggccggccgg tggtgccgga cgaatagagc
      901 atggcgcgcc cggcgctctc gtcggcgatg ggcgtggtcg ggaacccagc gcgggcgtcc
      961 tcgagactct ggaagggtcc cgcctcgcct cctaccatgt agagcgccac gccggggatc
     1021 aacggggcga cagcgagcgc ggtctcgctt agcgccttgg aggccacgaa gaccttcgcc
     1081 tcgcagtcct tgacgatgta ctcgacctct ccggtggtga gcttcgacga caggcaggtg
     1141 aagcgcaggc cggagcgctg ggcggcccac aggagctcgt agtagcgggg gttgttgtcg
     1201 atgaagaagg cgatggaatc gccggtcccg aggcccaggc tgcggaacag gtgcgccccc
     1261 tggttcgacc gcgcgtcgag ctcgccatag gtcacggtct cgccggagta ggccatgatg
     1321 caggcgggct tgtcgggatg ggtcctggcg tgggccgacg ggtgcatggt cttcctccgc
     1381 gcggcgggcg ccgcccctgt tcgatttgag gagcctcgcc gccaacttat cttcgttcgg
     1441 gcgctatagc gggccttgac ctaccgtccg tcaaggaccc tggaatggcg caaaaccagg
     1501 aggaattcat ggccgcgcca acctttgaga ccctgctcta cgctgtggag gacggggtcg
     1561 cgaccgtgac cctgaaccgg ccggagaagc tcaacgcctt caacacccag atgatgaacg
     1621 acatgatcgc ggtgttcgac gagaccgacc gggacgacgc ggtgcgctgc gtcatcgtca
     1681 ccggggcggg ccgcgcgttc tgcgccggcg cggacctttc ggccggcgcc cagaccttca
     1741 actacgatgc gcgcagcgcc gaggatcggg ccgcgcgcca gcgggacggg gtgcagcggg
     1801 acggcggggg cctgctcacc c
//
LOCUS       DATAJL010000845         5744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99115,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000845 DATAJL010000000
VERSION     DATAJL010000845.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5744
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99115"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..712
                     /locus_tag="VHN39_16090"
     CDS             <1..712
                     /locus_tag="VHN39_16090"
                     /inference="COORDINATES: protein motif:HMM:TIGR01845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux transporter outer membrane subunit"
                     /protein_id="HEX2817913.1"
                     /translation="QQQRANFEHAIAVLAGEAPGAFTLVAAPWVANVPPIPAIVPSTL
                     LQRRPDIAGAERRVQAANAQIGVQTAAYFPTIPLTGSYGFASSALGSLFNSSNSLWSY
                     GASIAETVFDAGARHARVGEAKAAHDQAVAKYRETVLEALQNVENELTATQVLAQQTD
                     LRRQASTAADAAETIVANQYRSGQVVYTDVVTAQTAAYTARRALAQIASQRQTTAVAL
                     IQSLGGGWKAGSDPKVSR"
     gene            complement(696..1205)
                     /locus_tag="VHN39_16095"
     CDS             complement(696..1205)
                     /locus_tag="VHN39_16095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethoxyubiquinone hydroxylase family protein"
                     /protein_id="HEX2817914.1"
                     /translation="MAEILRVDHAGEMAAVAIYRGQRTVLAGAAGHERIAGQLAEMET
                     QEAAHLARFDRLLTERLVRPTALAPVWRAAAFALGAGTALMGDKAAHACTEAVETVIE
                     EHYAHQIAELQTRDPELAAELSKFREEELAHRDLAVEEGARHAPGYAFLSAVIGAGCR
                     AAIKISEKL"
     gene            complement(1256..1768)
                     /locus_tag="VHN39_16100"
     CDS             complement(1256..1768)
                     /locus_tag="VHN39_16100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HEX2817915.1"
                     /translation="MQSILTPILDRWRFFALMASGFMLATAHAFQTFGGMAPCELCLK
                     QRTVYWVALAISAVAMVVVRMPGGPRLREASCWLLALVFLTSVGVAGYHAGVEWKYWP
                     GPASCSGGGTVSVAALKDLLNGVGQKMPACDKPAWVFAGLSMAGWNTVASLILVALSV
                     ASGLRERSKA"
     gene            complement(1802..2362)
                     /locus_tag="VHN39_16105"
     CDS             complement(1802..2362)
                     /locus_tag="VHN39_16105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEX2817916.1"
                     /translation="MLRKTYDWVMSLAERPQAPLALGVVAFCEGLFFPIPPDVLLMPV
                     VLGDRQRALRYAVLTTVCSIAGGSCGYAVGYFLQPVGEWLLSLTGGSYESFHTWYGKW
                     GALLIAVPIPYKITAIASGMAKLNFGLFIGVSVVVRGLRFGSEALLLKIYGEPIRAFV
                     EKRLALVASAVAVLLVGLVLLLKFAH"
     gene            2560..3144
                     /locus_tag="VHN39_16110"
     CDS             2560..3144
                     /locus_tag="VHN39_16110"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2817917.1"
                     /translation="MKFTTIAAIAAASLTACAANAATFSVSAFDNSSSGTGVGLASVS
                     LTAGEAFQVSVDPSDLWSAGALPRWSNADGLTGNRFATGTDESGEPAGTLIGQDFGLW
                     TEDGLSAPFGTLVGELGGVFKVLGTNFNGTAWNTGTLNLFYWDSNNVDNTGSVLASVI
                     VTNVPEPVTWSLMILGFGMAGSMLRRRRAVASDA"
     gene            3288..4382
                     /gene="hppD"
                     /locus_tag="VHN39_16115"
     CDS             3288..4382
                     /gene="hppD"
                     /locus_tag="VHN39_16115"
                     /EC_number="1.13.11.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003868 - 4-hydroxyphenylpyruvate
                     dioxygenase activity [Evidence IEA];
                     GO_process: GO:0006559 - L-phenylalanine catabolic process
                     [Evidence IEA];
                     GO_process: GO:0006572 - tyrosine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylpyruvate dioxygenase"
                     /protein_id="HEX2817918.1"
                     /translation="MTVDVKPQGRDLFENPLGTDGFEFVEFTSPEPERLKGLFEKMGF
                     TAVSKHRSKNVLRFRQGDINFILNMEPSGQAAAFREAHGPSANAMAFRVKDAAVALRL
                     AVERGAKAVEGPVGPMELNIPAIEGIGGSNLYLVDRYGAQEIYDVDFVAIEGAAEAEA
                     ANAVGLTYLDHLTHNVHRGNMGAWAAFYEDIFNFREIRYFDIEGKQTALISKAMTSPC
                     GKIRIPLNESRDEHSQIEEFLKDYKGEGIQHVALGTGDIYESVETMRDRGVKFQDTID
                     AYFDGIDARVPGHGENVQRLQADKILVDGAPTEGQGLLLQIFTENMIGPIFFELIQRK
                     GNEGFGEGNFKALFESIELDQMRRGVLPPK"
     gene            4388..5371
                     /locus_tag="VHN39_16120"
     CDS             4388..5371
                     /locus_tag="VHN39_16120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoaspartyl peptidase/L-asparaginase"
                     /protein_id="HEX2817919.1"
                     /translation="MNPTTWSLVIHGGSGVIDRADLKPEQDVAYRAVLARAAETGAAI
                     LRKGGAALDAVEAAIHVLEDDPLFNAGRGSVFTADGRNELDAAIMDGATLEAGAVAGV
                     TRVRNPISAARAVMERSPHVLLMGSGADAFAAAEGLVSVDPSYFFVERRWRALEKQLA
                     REGLPIPARPEGAAIDERHAALAHDEGKRGTVGVVARDARANVAAGTSTGGTTGKRWG
                     RVGDSPLIGAGTYASNGSAAVSGTGEGEYFIRLGVAREICALVELKGLMLQAAVDQVI
                     QRELTDLGGQGGVIAVAPDGQMAWSFNTSGMYRARVADGHALEVAIYKDET"
     gene            5387..>5744
                     /locus_tag="VHN39_16125"
     CDS             5387..>5744
                     /locus_tag="VHN39_16125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homogentisate 1,2-dioxygenase"
                     /protein_id="HEX2817920.1"
                     /translation="MATRNWIPVRGAQGQHSRQAHADMPAGTYEREISKEGFFGPAAF
                     IHHRRPPTGWVNFEGPLRPRAFDLNALNAAEPSPWAAGKVLGNPAVEIRFWKLAQAMP
                     ALARNADGDQLLFIHAG"
BASE COUNT          965 a         2060 c         1886 g          833 t
ORIGIN      
        1 ccagcagcaa cgggccaatt ttgagcacgc catcgccgtc cttgccggcg aagcgccggg
       61 cgcctttacg ctggtcgccg cgccctgggt ggccaatgtg ccgccaatcc cggcgatcgt
      121 cccctcgacc ctgttgcagc gtcggcctga tatcgccggg gccgaacgcc gggtgcaggc
      181 ggccaacgcc cagatcggcg tccagaccgc ggcctatttc ccgaccattc ccctcacggg
      241 ctcctatggc tttgcttcca gcgcgctcgg ctcgctgttc aacagctcca actccctgtg
      301 gagctatggc gcctcgatcg ccgagacggt cttcgacgcc ggcgcccgcc acgcgcgggt
      361 gggcgaggcc aaggcggccc acgaccaggc ggtggccaag taccgcgaga cagtgctgga
      421 ggccctgcag aacgtcgaga acgagctgac cgccacccag gtcctggccc agcagaccga
      481 cctgcgccgc caagcctcaa ccgccgcgga cgccgccgaa accatcgtgg ccaaccagta
      541 ccgctccggc caggtcgtct ataccgacgt ggtcaccgcc cagaccgcgg cctacaccgc
      601 ccgccgcgcg ctcgcccaga tcgcgtccca gcggcagacc acggcggtgg cgctgatcca
      661 gtcgctgggc ggcggctgga aggctggcag cgaccctaaa gtttctcgct gatcttgatg
      721 gccgcgcggc agccggcgcc gatcaccgcc gacaggaacg cgtagccagg ggcgtgccgc
      781 gcgccctcct ccaccgccaa gtcccggtgg gccagctcct cctcacggaa tttcgaaagc
      841 tcggccgcca gctccgggtc gcgcgtctgg agctcggcga tctggtgggc gtagtgctcc
      901 tcgattacgg tctccaccgc ctcggtgcag gcgtgcgcgg ccttgtcgcc catcagcgcc
      961 gtgccggcgc ccagcgcgaa ggcggcggcc cgccagaccg gcgccagcgc cgtcggccgc
     1021 accaggcgct cggtgagcag gcggtcgaat cgggcgaggt gagcggcttc ctgggtctcc
     1081 atctcggcga gctggccggc gatccgctcg tggcccgcag cccccgccag caccgtgcgc
     1141 tggccgcggt agatggcgac ggcggccatt tcgccggcat ggtcgacgcg cagaatctcg
     1201 gccatccggg cggcgagcgc gcctcggccg gggcgcggcg ggatgggctt ttcgctcacg
     1261 ccttgctccg ttcgcgtaag cccgaggcca cgctgagcgc caccaggata agcgaggcca
     1321 ccgtgttcca gccggccatc gaaaggcccg cgaacaccca ggccggcttg tcgcaggccg
     1381 gcatcttctg gcctacgccg ttcagcaggt ccttcagcgc cgccaccgac accgtgccgc
     1441 cgcccgaaca gctcgcaggc cctggccagt acttccactc cacgcccgcg tgatagccgg
     1501 cgacgccaac gctggtcagg aagaccagcg ccagcagcca gcagctcgcc tcgcgcaggc
     1561 gcgggccacc gggcatccgc acgacaacca tggcgaccgc cgagatcgca agcgcgaccc
     1621 aatagaccgt ccgctgcttc agacagagct cgcacggcgc catgccgccg aaggtctgga
     1681 aggcgtgcgc cgtggccagc atgaagcccg acgccatcag ggcaaagaac cgccagcggt
     1741 cgaggatggg ggtcaggatg ctctgcatcg gccctctata gcccgtctgt ccaggggcgg
     1801 cctagtgggc gaacttcagc agcaagacga ggcccacgag cagcaccgcc accgcgctgg
     1861 ccaccagggc caggcgcttc tccacgaagg cgcggatcgg ttcgccgtag atcttcagca
     1921 gcagggcctc cgagccgaac cgcagcccgc gcaccaccac cgagaccccg atgaagaggc
     1981 caaagttgag cttggccatg cccgaggcga tggcggtgat cttgtagggg atcggcaccg
     2041 cgatcagcag ggcgccccat ttgccgtacc aggtgtggaa cgactcgtag ctgccgccgg
     2101 tcagcgacag cagccactcg cccaccggct gcaggaaata gcccaccgca tagccgcaac
     2161 tgccgccggc gatggagcag accgtggtca gaaccgcgta gcgcagcgcc cgctggcggt
     2221 cgcccagcac caccggcatc agcagcacat ccggcgggat cgggaagaac agcccctcgc
     2281 agaacgccac cacgcccagc gccagcggcg cctgcggccg ctcggccagc gacatcaccc
     2341 agtcataggt cttgcgaagc atcgagcgat ccgaagcggc ggtggatgcc ctcgctagca
     2401 ggccggcccg cccttgtctc gcagaccccg cccaggtcgc accgtgcccg ggcgcgcgca
     2461 ctccaggaac aaatgatgtc acatcggatt gtatggcttg actcggaagc cctggggatt
     2521 gcgtcttatg cgcgtcgggg ggccagttgg aggcccaaga tgaagttcac cacaatcgct
     2581 gccattgctg cggccagttt gaccgcctgc gctgcgaacg ccgccacctt ttcggtctca
     2641 gccttcgaca actcgtccag cgggacgggc gtcggccttg cgagcgtcag tctcacagcg
     2701 ggtgaagcgt tccaggtttc ggttgatccc tctgacctct ggagcgcggg tgccctgccg
     2761 cgctggtcga acgccgacgg cctgaccggg aaccgcttcg cgaccgggac ggatgaatca
     2821 ggcgagccag caggtacgct gatcggccag gatttcggcc tgtggaccga agacggtctc
     2881 tcggcgccct tcggcacctt ggtcggggaa ctgggcggcg tcttcaaggt gctgggcacg
     2941 aacttcaacg gtacggcctg gaacaccggg acgctcaatc tcttctactg ggactcgaac
     3001 aacgtcgaca acaccggctc ggtgctggcg tcggtcatcg tgaccaacgt gccggagccg
     3061 gtgacctgga gcctgatgat cctcgggttc ggcatggcgg gctcaatgct ccgccggcgc
     3121 cgcgccgtgg cctctgacgc ctgatccggc gcaccactgc gtgaagaggg ccgtccggcg
     3181 cgagcgcggg cggccttttt cgtggcccgg tcgaccgacc tttcatcgac tctaccgata
     3241 actagtttca tatgatacga aatgactcca gacaggagac ctggccgatg accgtcgacg
     3301 tgaagccgca agggcgcgac ctcttcgaaa acccgctcgg caccgatggc ttcgagttcg
     3361 tggagttcac ctcgccggag ccggagcggc tgaagggcct cttcgagaag atgggcttta
     3421 ccgccgtctc gaagcatcgg tcgaagaacg tgctccgctt ccgccagggc gacatcaact
     3481 tcatcctcaa catggagccc tccggccagg ccgccgcctt ccgtgaggct cacggccctt
     3541 cggccaacgc catggcgttt cgggtgaagg acgccgccgt ggccctgagg ctcgccgtcg
     3601 agcgcggcgc caaggccgtc gagggcccgg tcggccccat ggagctgaac atcccggcca
     3661 tcgagggcat cggcggctcg aacctctatc tggtcgaccg ctatggggcc caggagatct
     3721 acgacgtcga cttcgtggcc atcgaaggcg cggcggaggc cgaagccgcg aacgccgtcg
     3781 gcctgaccta cctcgaccac ctgacccaca acgttcaccg cggcaacatg ggcgcctggg
     3841 ccgcgttcta cgaggacatc ttcaacttcc gcgagatccg ctacttcgac atcgagggca
     3901 agcagacggc gctgatctcc aaggccatga ccagcccttg cggcaagatc cgcatcccgc
     3961 tcaacgagag ccgcgacgag cactcgcaga tcgaggaatt cctcaaggac tacaagggcg
     4021 agggcatcca gcatgtggcg ctggggaccg gcgatatcta cgagtccgtc gagaccatgc
     4081 gcgaccgggg cgtgaagttc caggacacca tcgacgccta tttcgacggg atcgacgccc
     4141 gcgtcccggg ccacggcgag aacgtgcagc gcctgcaggc cgacaagatc ctggtcgacg
     4201 gcgcccccac cgaaggccag ggcctgctgc tgcagatctt caccgagaac atgatcggcc
     4261 cgatcttctt cgagctgatc cagcgcaagg gcaacgaggg cttcggcgag ggcaacttca
     4321 aggcgctctt cgaatccatc gaactggacc agatgcgccg cggcgtgctt ccgcctaagt
     4381 aagggcgatg aacccgacaa cctggtccct ggtcatccac ggcggctccg gcgtcatcga
     4441 ccgggccgac ctgaagcccg agcaggatgt ggcctatcgc gccgtgctgg cgcgggccgc
     4501 cgagaccggc gcggcgatcc tgcgcaaagg cggcgcggcg ctcgacgcgg tcgaggccgc
     4561 gatccatgtg ctggaggacg acccgctgtt caacgccggg cgcggctcgg tcttcaccgc
     4621 cgatggccgc aacgagctgg acgccgcgat catggacggc gcgacccttg aggccggcgc
     4681 cgtcgcgggc gtcacgcggg tgcgcaatcc aatctcggcg gcccgcgcgg tgatggagcg
     4741 ctcgccccat gtcctgctga tgggctccgg cgccgacgcc ttcgccgccg ccgagggtct
     4801 ggtcagcgtc gatcccagct atttcttcgt cgagcgccgc tggcgcgccc tggaaaagca
     4861 gctcgcccgc gagggcctgc ctatacccgc gcggcccgag ggcgccgcga tcgacgagcg
     4921 ccacgccgcg ctcgcccacg acgaaggcaa gcgcggcaca gtgggcgtcg tggcccgcga
     4981 cgcccgcgcc aatgtcgccg ccggcacctc gacgggcggg accaccggca agcgctgggg
     5041 ccgggtcggc gacagcccgc tgatcggcgc cggcacctat gcctccaatg gctcggccgc
     5101 cgtctccggc accggggagg gcgagtattt catccggctg ggcgtagccc gcgagatctg
     5161 cgccctggtc gagctgaagg gcctgatgct gcaagccgcc gtcgaccagg tgatccagcg
     5221 cgaactcacc gacctgggcg gtcagggcgg cgtcatcgcc gtcgcccccg acggccagat
     5281 ggcctggagc ttcaacacct ctggcatgta ccgcgcccgc gtcgccgacg gccacgcgct
     5341 cgaggtggcg atctacaaag atgaaacgtg attgggacga aagctgatgg cgacccgaaa
     5401 ctggatcccg gtgcgcggcg cgcaagggca gcactcccgc caggcccacg ccgacatgcc
     5461 ggccggcacc tatgagcggg agatctccaa ggaggggttc ttcggcccgg ccgccttcat
     5521 ccaccacagg cgaccgccca ccggatgggt gaatttcgag gggccccttc gcccgcgagc
     5581 ctttgacctc aatgcgctga acgccgccga gcccagcccc tgggcggcgg gaaaggtgct
     5641 cggaaatcct gctgtcgaga tccggttctg gaagctcgcg caagccatgc cggcgctggc
     5701 ccgcaacgcc gatggcgacc agctcctgtt catccacgcc ggcg
//
LOCUS       DATAJL010000846         1590 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99148,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000846 DATAJL010000000
VERSION     DATAJL010000846.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1590
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99148"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(270..>1590)
                     /locus_tag="VHN39_16130"
     CDS             complement(270..>1590)
                     /locus_tag="VHN39_16130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribonucleotide reductase"
                     /protein_id="HEX2817921.1"
                     /translation="AGVETSEAHALLLGRADLADAPGVNHAGLLARGFTDHEIAAVEA
                     ALPLVARLTDAFAPSVIGEGFLRDVMGASADQLADPQFDALALMGFAAADVAAAEAHA
                     LGADSLAQAEFLTPIARDVFRTSEALGEAPRRAMIQALELALAVPPVTEIEIAWSATP
                     DEVLDVLNQTTGAIRVRRAAAPADLSLDLPSLVEPRAARPPEPEERIVERVVERDRTR
                     RKLPDRRKGYIQKAAVGGHKVYLHTGEYDDGELGEIFIDMHKEGAAFRSLMNNFAIAI
                     SIGLQYGVPLDEFVDAFVFTRFEPAGPVTGNDTVKSATSILDYIFRELGVSYLGRKDL
                     SNADPSELNADGLGRGKRDGAEADALDELGPQLASRFISRGFSRGAAPDNLVFLPTAN
                     RGNGPSNLEAADVCAACGDVAVVRKGVSLICETCGARAARLGEDLGA"
BASE COUNT          247 a          530 c          570 g          243 t
ORIGIN      
        1 gcagcctgcg gcctgagagt tcgcacttgg cgcagtcgcc gccaaaggta ttggacctcg
       61 gcacttcctt gtcgtggtca gacgagtggg cccaagccgc cgccggcgcc gccagggcta
      121 gcgccgccaa agcgatcaga atgtatgggg tcgtcttggc cactcggaag ctgtccctga
      181 aacttgcggg ttccatctga ccgcgacagc tccgtgacgc cacttaattc gcggtaattg
      241 ttaagggctt aggcaagatc gaccgcaatc taggccccca ggtcttcgcc caggcgcgcc
      301 gcgcgcgcgc cgcaggtttc gcagatcagc gagacgccct tgcgcaccac ggccacatcg
      361 ccgcaggccg cgcagacatc ggccgcctcc aggttcgagg ggccgtttcc ccggttcgcg
      421 gtgggcagga agaccaggtt gtcgggcgcg gcgccccgcg agaagccgcg ggagatgaac
      481 cgggaggcca gctgcgggcc cagctcatcc agcgcatcgg cctccgcgcc gtccctcttg
      541 ccacggccga ggccgtcggc gttgagctcg ctcggatcgg cgttggagag atccttgcgc
      601 cccagatagg agacgcccag ctcgcggaaa atgtagtcga ggatcgaggt cgccgatttc
      661 accgtgtcgt tgccggtcac cggtcccgcg ggctcgaagc gcgtgaagac gaaggcgtcg
      721 acgaactcgt ccagcggcac gccgtactgc aggccgatcg agatcgcgat ggcgaagttg
      781 ttcatcagcg agcggaaggc ggcgccttcc ttgtgcatgt cgatgaaaat ctcgccgagt
      841 tcgccgtcgt cgtattcgcc ggtgtgcaga tagaccttgt ggccacccac cgcggccttc
      901 tggatatagc ccttgcggcg gtcgggcagt tttcgccgcg tacggtcgcg ctccaccacc
      961 cgctcgacga tccgctcctc gggctccggc ggacgcgccg cgcggggctc gacgaggctc
     1021 ggcagatcaa ggctgagatc ggcgggcgcg gcggcgcggc ggacgcggat cgcgcccgta
     1081 gtctggttca ggacatcgag gacttcgtcg ggcgtggcgc tccaggcgat ctcgatctcg
     1141 gtgaccgggg ggaccgccag ggcaagctcc agggcctgga tcatcgcccg cctcggcgct
     1201 tcacccaggg cctcggacgt gcggaagacg tcgcgggcga taggggtcag gaattcggcc
     1261 tgcgcgaggc tatcggcccc cagggcgtgg gcttcggcgg cggccacgtc ggcggcggca
     1321 aagcccatca gcgccaacgc gtcgaactgc gggtcggcca gctgatcggc gctggcgccc
     1381 atcacgtcac gcaggaagcc ctcgccgatg accgagggcg cgaaggcgtc agtaaggcgg
     1441 gccaccaggg gcaaggcggc ctccaccgcg gcgatctcgt ggtcggtgaa gccgcgggcc
     1501 aggaggccgg cgtgattgac gccgggcgcg tcggccagat cggcgcggcc gagcagcagg
     1561 gcgtgggcct cggaggtctc gacgccggcc
//
LOCUS       DATAJL010000847         2300 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99153,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000847 DATAJL010000000
VERSION     DATAJL010000847.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2300)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2300)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2300
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99153"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..417
                     /locus_tag="VHN39_16135"
     CDS             <1..417
                     /locus_tag="VHN39_16135"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2817922.1"
                     /translation="FQLWTKESGVGVVRAVASSCSVPGVYPPVTLKGRRYIDGGMRSS
                     TNADMATGHEVVVVVAVRLGAATGTLGERIAARFNEEIETLKDGGGTVLAVTPDEASI
                     AAFGPNLMDFRRRPGAARAGLAQGLAYAADMKAYWN"
     gene            complement(414..1574)
                     /locus_tag="VHN39_16140"
     CDS             complement(414..1574)
                     /locus_tag="VHN39_16140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEX2817923.1"
                     /translation="MIPFIDLQAQRKRLGQPLEDAILKVVRSGAYIMGPEIAEFERQL
                     CAFGQAPFALSCGSGTEALVLPLMAWGIGPGDAVFCPSFTFAATAEAMPLVGASPVFV
                     DIDPDTYNLDPASLEAAIVAVKADGKLTPRAVIAVDLFGGPADYPALAAVCARHGLKL
                     IADSAQGFGCTLSGHHPIHWADVTTTSFFPAKPLGCYGDGGAVLSKDARFHDLLVSLR
                     VHGQAVKSDIEGKTFEHDPKYLNIRIGMNSRMDTIQAAVLIEKLKIFEDEIAARNRVA
                     DRYAEGLSDLVKTPTVLKGGVSVWAQYTIELAGRDDLGPQLKEQGIPTAVYYPIPIHK
                     QGVYAVYPTAPGGLPVTEAKAGQVISLPMHPYLSADDQDQVIAAIRAFVKKN"
     gene            1720..>2300
                     /locus_tag="VHN39_16145"
     CDS             1720..>2300
                     /locus_tag="VHN39_16145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817924.1"
                     /translation="MTAAAINPARRAMGTFYVWMAALFVLIAFSGFAETYWMQIPAGT
                     FTGSPLLHLHGLLYSAWTLFFLSQTWLAASGRMQHHRAWGVAGVSLATAMVFVGFATG
                     IASMQKDVAGGHAQAARAFAIVPLTAAVLFAVLVAWAVVTVKTPETHKRLMMLATLSI
                     LQAPLGRFFFLTVGGGGGAGSRPGSGPPAPAVTT"
BASE COUNT          334 a          737 c          854 g          375 t
ORIGIN      
        1 ttccagctgt ggacgaagga gtccggcgtg ggcgtggtgc gcgcggtggc ctcgagctgc
       61 agcgtgccgg gggtctatcc gccggtgacg ctgaagggcc gccgctatat cgacggcggc
      121 atgcgttcct ccaccaacgc cgatatggcg accgggcacg aggtggtggt ggtggtcgcc
      181 gtgcggctcg gcgcggctac agggacgctg ggcgaacgga tcgccgcgcg cttcaacgag
      241 gagatcgaga ccctgaagga cggcggcggc acggtgctgg cggtcacgcc cgacgaggcc
      301 agcatcgcgg ccttcggccc caacctgatg gacttccgcc gccggccggg cgcggcgcgc
      361 gcgggcctgg cccagggcct cgcctatgcc gccgacatga aggcctactg gaactagttc
      421 ttcttcacga aggcgcggat ggcggcgatg acctggtcct ggtcgtcggc gctgagatag
      481 gggtgcatgg gcaggctgat cacctgaccg gccttggcct cggtgaccgg caggccgccg
      541 ggcgcggtgg gatagaccgc atagacgccc tgcttgtgga tcgggatcgg gtagtagacg
      601 gcggtcggga tgccctgttc cttgagctgg ggcccgaggt cgtcgcggcc cgcaagttcg
      661 atcgtgtact gcgcccagac gctgacgccg cccttcagca cggtgggggt cttcaccagg
      721 tcagagaggc cctcggcata gcggtcggcg acgcggttgc gggcggcgat ctcatcctcg
      781 aagatcttca gcttctcgat caggacggcg gcctggatgg tgtccatgcg ggaattcatc
      841 ccgatgcgga tgttcaggta cttggggtcg tgctcgaagg tcttgccctc gatgtccgac
      901 ttcaccgcct ggccgtggac gcggagcgag accagcaggt cgtggaagcg cgcgtccttg
      961 gacagcaccg ccccgccgtc gccatagcag cccagcggct tggccggaaa gaaggacgtt
     1021 gtggtgacgt cagcccagtg gatggggtga tggccgctga gcgtgcagcc gaagccttgc
     1081 gcggaatcgg cgatcagctt gaggccgtgc ctcgcgcaga cggcggccag cgccggatag
     1141 tcggccggac cgccgaacag gtcgacggcg atgaccgcgc gcggggtcag cttgccgtcc
     1201 gccttcaccg caacgatggc cgcctccagg ctcgcggggt cgaggttgta ggtgtcgggg
     1261 tcgatgtcca cgaagaccgg cgaggcgccc accagcggca tggcctcggc ggtggcggcg
     1321 aaggtgaagg acgggcagaa gaccgcgtcg ccggggccga tcccccaggc catcagcggc
     1381 agcaccaggg cctcggtgcc cgagccgcag gagagcgcga agggcgcctg gccgaaggcg
     1441 cagagctggc gttcgaactc ggcgatctcc gggcccatga tgtaggcgcc cgagcggacc
     1501 accttcagaa tcgcgtcctc aagtggctgg cccagacgct tgcgctgcgc ctgcaggtcg
     1561 atgaacggga tcatgagcgg cctttcgcga acatgcggcg cgcctatgcc atgcgtcgcc
     1621 cggccaagcc aaaacacgct tggtgtctct gtattgcggt gtagccgcat ttgcgggtcg
     1681 ggtgcatgct cgcggcatca ggcttgggga ggcgacgaca tgacagcggc ggcgatcaat
     1741 cccgcacggc gggcgatggg gacgttctac gtctggatgg cggcgctctt tgtgctgatc
     1801 gccttcagcg ggttcgcgga aacctactgg atgcagattc ccgcgggcac gttcaccggc
     1861 tcgccgctcc tgcacctgca cggactgctc tattccgcat ggacgctgtt cttcctgagc
     1921 cagacctggc tcgcggccag cggacggatg cagcatcacc gggcctgggg cgttgcgggg
     1981 gtctcgctgg cgacggccat ggtgttcgtg ggattcgcca ccggcatcgc cagcatgcag
     2041 aaggacgtcg cgggcggcca cgcccaggcg gcccgcgcct tcgccatcgt gccgctcacc
     2101 gcggcggtgc tgttcgccgt gctggtggcc tgggcggtgg tgacggtgaa gacgccggag
     2161 acccacaagc gcctgatgat gctggcgacc ctttcgatcc tgcaggcccc gctgggccgg
     2221 ttcttcttcc tgacggtggg cggcggcggc ggcgccggat cgcgaccggg ctccgggccc
     2281 ccggcgccgg cggtcaccac
//
LOCUS       DATAJL010000848         1807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99302,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000848 DATAJL010000000
VERSION     DATAJL010000848.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99302"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(139..993)
                     /locus_tag="VHN39_16150"
     CDS             complement(139..993)
                     /locus_tag="VHN39_16150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acyl homoserine lactonase family protein"
                     /protein_id="HEX2817925.1"
                     /translation="MFSKSRLTRALRAFAIVAALQAMAGSALAAPNPAVKLYAIDCGH
                     SVFTDAGVLADDGSLKGKPLEVVVPCFLIRHPKGDLIWDTGLPEIIARMPAGLTAGGV
                     HTTVARTLTDQLADLGLKPQDIGYLSLSHSHVDHTGSVASFSKAVWIIDERERAYIAG
                     GAAGPGLAKTLAAAQTRVIAGDEDADVFGDGSVTIIQAPGHTPGHAVLLVKLAHAGAV
                     LISGDLWQTSEARKNRLVPTNNTDRAQTLVSMDKVEAVVRKTHARVIREHVLEDFKSL
                     PAFPKPLD"
     gene            complement(1053..1463)
                     /locus_tag="VHN39_16155"
     CDS             complement(1053..1463)
                     /locus_tag="VHN39_16155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817926.1"
                     /translation="MKRRAAALAALLILGGCGQGGQTAGGAPADKFAGLDGEILTWRK
                     QIIATDPLCKATADDQKCQTFEVACKAERTVTPADQAKGVTAHVVVMMTWNGFDPKFK
                     HPQAGTLAAEFTKSGSGWTQAAHGPVYMQTCADL"
     gene            complement(1535..>1807)
                     /locus_tag="VHN39_16160"
     CDS             complement(1535..>1807)
                     /locus_tag="VHN39_16160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517670.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEX2817927.1"
                     /translation="DLQRPLAGRTALVVDDVFDTGLSLSEAARLVRDAGAGKVMTCVF
                     ARKPWPTQRAIEPDFVAWEAPARFLVGYGMDAAGAYRGLPYIGALD"
BASE COUNT          266 a          618 c          628 g          295 t
ORIGIN      
        1 aaggcggtga ggccagggcg ggggcggttg ccgtggcgag cgccgcggcc agcagcgccg
       61 aggtcagtgt ggcgcggcca attcggtcat ggctcatctg gtttcaactc cctgttatgt
      121 tccgctctga acggcggctt agtccaatgg cttcggaaag gcgggcagcg acttgaagtc
      181 ctccagcacg tgctcgcgga tcacccgggc gtgagttttg cggaccaccg cctcgacctt
      241 gtccatcgag accagcgtct gggcccggtc ggtgttgttg gtggggacca ggcggttctt
      301 ccgcgcctcc gaggtctgcc acaggtcgcc cgagatcagc accgcgccgg catgcgccag
      361 cttcaccagc aggaccgcgt ggcccggcgt gtgtccgggc gcctggatga tggtcaccga
      421 gccgtcgccg aacacgtcgg cgtcctcgtc gcccgcgatc acccgcgtct gggcggccgc
      481 cagggtcttg gccagccccg gccccgccgc gccgccggcg atataggccc gctcgcgctc
      541 atcgatgatc cagacggcct tcgagaaact cgccaccgag ccggtatggt ccacgtggct
      601 gtgcgacagg gacaggtagc cgatgtcctg cggcttcagc cccaggtcgg cgagctggtc
      661 ggtgagcgtg cgggccaccg tggtgtgcac cccgccggcg gtcaggccgg ccggcatcct
      721 ggcgatgatc tccggcaggc cggtgtccca gatcaggtcg cccttgggat ggcggatcag
      781 gaagcacgga acgacgacct cgagcggctt gcccttcagg cttccgtcgt cggccagcac
      841 gcccgcgtcg gtgaagacgc tgtggccgca gtcgatggcg tagagcttga ccgcgggatt
      901 gggcgcggcc agggcggacc cggccatggc ctgcaacgcc gcgacgatcg caaacgccct
      961 gagcgcgcgc gtcagcctgc tcttggaaaa catcccgggc ccccggaaac cgttcttgct
     1021 tccgcgacag tgccctcttg cgtcctacgc cgctagaggt cggcgcaggt ctgcatatag
     1081 accgggccgt gagcggcctg cgtccagcct gagccggact tggtgaactc cgcggcgagc
     1141 gtgccggcct ggggatgctt gaacttcgga tcgaagccgt tccacgtcat catcacgacc
     1201 acatgggcgg tgacgccctt ggcctggtcg gccggcgtca cggtgcgctc ggccttgcag
     1261 gccacctcga aggtctggca cttctggtcg tccgccgtcg ccttgcacag gggatcggtg
     1321 gcgatgatct gcttgcgcca ggtcaggatc tcgccgtcga gaccggcgaa cttgtccgcc
     1381 ggcgccccgc cggccgtctg gccgccctgg ccgcagccgc cgaggattag aagggccgcg
     1441 agggcggccg cacgtcgctt caagataact gctcccatgg agatagaacg cggtcggtac
     1501 tcaagcgatg cgaccggttg atggcgaagc ctgtctaatc cagtgcgccg atgtagggga
     1561 gcccccgata ggcgcccgcg gcatccatgc cgtatccgac caaaaatcgg gcaggcgctt
     1621 cccaggcgac gaagtccggc tcgatggccc tctgcgtcgg ccagggcttg cgggcgaaga
     1681 cgcaggtcat gaccttgccc gcgccggcgt cgcgcaccag ccgcgcggcc tcggagagcg
     1741 acaggccggt gtcgaagacg tcgtcaacca ccagcgccgt ccgcccggcc agcggccgtt
     1801 gcaggtc
//
LOCUS       DATAJL010000849         3592 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86436,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000849 DATAJL010000000
VERSION     DATAJL010000849.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86436"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1964
                     /locus_tag="VHN39_16165"
     CDS             <1..1964
                     /locus_tag="VHN39_16165"
                     /inference="COORDINATES: protein motif:HMM:NF014026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-glucosidase"
                     /protein_id="HEX2817928.1"
                     /translation="PGVSDLSIPDLTESDASLGVANAGRKDDDATPLPSGMALAATWD
                     AKTAFAAGAMIGKEARQKGFNTLLAGGANLLRDPRNGRNFEYLGEDPLLAGTLAGATI
                     KGIQSNHIVSTTKHFALNDQETGRMVLDAKIDEAAFRESDLLAFEIAIETGHPGSVMC
                     AYNRVGGTYACENPFLLTDVLRTDWKYPGWVMSDWGAVHGVAAAKAGLDQESGQQLDK
                     QVFFDAPLKAAVASGEVSPARIHQMVHRYLRSLFAAGVIDHPVAAGGLDTVADAKVSG
                     RAAEQGIVLLKNQDFLLPLMASARRIAVIGGHADVGVISGGGSSQVIPLGSKAFPKPK
                     GAPQWGGGEVYYPSSPLAAIKARAPGAEVTFNDGADPAAAAALAKASDVVVVFATQWS
                     TEGMDIAMSLDDRQDALVAAVAQANQKTVVVLETAGPVLMPWRDRAGAILEAWYPGAL
                     GGEAIGKALFGEINPEGRLPATFPASADQLARPVLPGSDQHIVETLTPSAATAFDVTY
                     GEGSDIGYRAYAKSGQTPLYPFGYGLSYTVFRYSGLKVTGGKALTASFTVTNVSNRAG
                     TDTPQLYLAAAPKRTQQRLIGWSKVTLKPGEAREVSVTAPARMLANWDAGAHRWRLDG
                     GAYKVFVGPDAATASLKGSAKLAAASLRP"
     gene            complement(1972..>3592)
                     /locus_tag="VHN39_16170"
     CDS             complement(1972..>3592)
                     /locus_tag="VHN39_16170"
                     /inference="COORDINATES: protein motif:HMM:NF012664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817929.1"
                     /translation="SATVALAQPPAPSERSGERPAAAARAARVSSDEPATAGPVVERR
                     SERAAQASERKIGDSDIATAPVIEVAKTSHHTVTIDGKTIPYTATAGTLTLRDDDGKP
                     VASMFYVAYVADGPKDANRPVTFSYNGGPGSASLFVHMGLAGPMHVMTDSPNATHNAP
                     FTITENHQSLLDKSDMVFLDAIGAGYSRPLGDTKGTAFWGVDQDIDAFARGIQRYITI
                     NHRWNSPKFLFGESYGTTRSAGLVYALQQRGMQVNGVLLLSSVLNYGAHDSGFDHSYV
                     SYVPSFAATAVYWKKSATQPADLPAYLKEVRAWASGPYLTALTKGADISPQEFDATAR
                     QLSAYIGLPVDFIKRANLRVDLSRFRTELLRDQGRILGRYDTRFTGINADNAAENPEY
                     DPSDTGINGAYVGALHDWLEQGLGYTTELNYWPSGPGINQAWDWKHRPPGGGFGGGGR
                     KEPVANTAADMGVAMRENPHLKIFSLNGLYDMATPFFGTEYDIAHLWLDPAVRNNVRF
                     GYYPSGHMVYLNQDALKQMKADVAKFYDDAK"
BASE COUNT          548 a         1203 c         1280 g          561 t
ORIGIN      
        1 tgccgggcgt ttccgacctc agcatccccg acctgaccga gagcgatgcg agcctcgggg
       61 tcgccaacgc cgggcgcaag gacgacgacg ccacgccgct cccgtccggc atggcgctgg
      121 ccgccacctg ggacgccaag accgccttcg ccgcgggcgc gatgatcggc aaggaagcgc
      181 ggcagaaggg cttcaacacc ctgctggccg gcggcgccaa cctgctgcgc gacccgcgca
      241 acggccgcaa cttcgaatac ctgggcgaag acccgctgct ggccggcacg ctggccggcg
      301 ccacgatcaa gggcatccag tccaaccaca tcgtctccac caccaagcat ttcgcgctga
      361 acgaccagga gaccgggcgc atggtgctgg acgcgaagat cgacgaggcg gcgttccggg
      421 agagcgacct gctggccttc gagatcgcca tcgagaccgg ccatccgggc tcggtgatgt
      481 gcgcctacaa ccgggttggc gggacctacg cctgcgaaaa ccccttcctg ctcaccgacg
      541 tcctgcggac cgactggaaa tatcccggct gggtgatgag cgactggggc gccgtgcacg
      601 gcgtggccgc cgccaaggcc ggcctcgacc aggaatcggg ccagcagctc gacaagcagg
      661 tgtttttcga cgcgccgctg aaggccgccg tggccagtgg cgaggtctcg ccggcgcgta
      721 tccatcagat ggttcaccgc tatctgcgca gcctgttcgc cgccggggtc atcgatcatc
      781 cggtggccgc gggcggcctc gacaccgtcg ccgacgccaa ggtctccggc cgggccgcag
      841 agcaggggat cgtgctgctg aagaaccagg acttcctgct gccgctgatg gcttcggcca
      901 gacgcatcgc ggtgatcggc ggccacgccg acgtgggggt gatctccggc ggcggctcgt
      961 cccaggtcat ccctctgggg tcgaaagcct tcccaaagcc caagggcgcg ccgcagtggg
     1021 gcggcggtga agtctactat ccgtcgtcgc ccctggccgc gatcaaggcc cgcgcgccgg
     1081 gcgcggaggt gaccttcaac gacggagccg atccggccgc cgccgccgcg ctcgccaagg
     1141 cctccgacgt ggtggtggtg ttcgccaccc agtggtccac cgagggcatg gacatcgcca
     1201 tgtcgctgga cgaccggcag gacgcgctgg tcgccgccgt cgcccaggcc aaccagaaga
     1261 ccgtggtggt gctggagacc gccggccccg tgctgatgcc ctggcgcgac cgcgcgggcg
     1321 cgatcctcga agcctggtat ccgggcgcgc tgggcggcga ggcgatcggc aaggcgctgt
     1381 tcggcgagat caaccccgag ggccgcctgc ccgccacctt cccggccagc gccgaccaac
     1441 tcgcccggcc cgtgctgccg ggttcggacc agcacatcgt cgagaccctg acgccgtcgg
     1501 ccgcgacggc cttcgacgtt acctatggcg agggctccga catcggctac cgcgcctacg
     1561 ccaagtccgg ccagacgccg ctctatccgt tcggctacgg gctctcctac accgtgttcc
     1621 gctactcggg gctgaaggtg accggcggca aggcgctcac cgccagcttc acggtcacca
     1681 acgtcagcaa ccgcgccgga accgacacgc cgcagctcta tctggccgcg gcgcccaagc
     1741 gcacgcagca gcggctgatc ggctggtcga aggtgacgct gaagcccggc gaggcgcgcg
     1801 aggtctccgt gaccgcgccg gcgcgaatgc tcgccaactg ggacgcaggc gcccaccgct
     1861 ggcggctcga tggcggcgcc tacaaggtct ttgtgggtcc cgacgccgcc acggcctcgc
     1921 tgaaaggctc agcaaaactc gcggcggcgt cgctcaggcc ctagtcgagg cctatttggc
     1981 gtcgtcgtag aacttcgcca cgtcggcctt catctgcttc agggcgtcct ggttcagata
     2041 gaccatgtgc ccggaggggt agtagccgaa ccgcacgttg ttgcgcacgg ccgggtccag
     2101 ccacaggtgg gcgatgtcgt actcggtgcc gaagaacggc gtcgccatgt cgtagaggcc
     2161 gttcagcgag aagattttca ggtgcgggtt ttcgcgcatg gccacgccca tgtcggcagc
     2221 tgtgttggcc accggctctt tgcggccacc gccgccgaag ccaccacccg gcggacggtg
     2281 cttccaatcc cacgcctgat tgatgccggg gcccgacggc cagtagttga gctcggtcgt
     2341 gtagcccagg ccctgctcca gccagtcgtg cagcgcgccg acgtaggcgc cgttgatgcc
     2401 ggtgtcggag gggtcatatt ccgggttctc ggcggcgttg tcggcgttga tgccggtgaa
     2461 gcgggtgtca tagcggccga ggatgcgacc ctggtcgcgc aagagctcgg tgcggaaacg
     2521 cgagagatcg acccgaaggt tggcccgctt gatgaagtcc accggcaggc cgatgtaggc
     2581 cgagagctgc ctggccgtcg catcgaattc ctgcggcgag atgtcggcgc ccttggtcag
     2641 cgccgtcaga tacggccccg aagcccaggc gcggacttcc ttcagatagg cgggaaggtc
     2701 ggccggctgg gtggcggact tcttccagta gacggcggtg gccgcgaagc tcgggacgta
     2761 gctgacgtag ctgtggtcga agcccgagtc gtgggcgccg tagttcagca ccgaggagag
     2821 cagcagcacg ccgttcacct gcatcccgcg ttgctgcagc gcatagacca ggcccgccga
     2881 gcgggtcgtg ccgtagctct cgccgaacag gaacttcggc gagttccagc ggtggttgat
     2941 ggtgatgtag cgctggatgc cgcgggcgaa ggcgtcgatg tcctggtcca cgccccagaa
     3001 ggccgtgccc ttggtgtcac cgagcgggcg cgaatagccg gcgccgatgg cgtcgaggaa
     3061 caccatatcc gacttgtcga gcagggactg atggttctcg gtgatcgtga agggcgcgtt
     3121 gtgcgtcgcg ttggggctgt cggtcatcac gtgcatcgga ccggccaggc ccatgtgcac
     3181 gaagagcgag gccgagcccg ggccgccgtt gtagctgaag gtcaccgggc ggttggcgtc
     3241 cttcggaccg tcggcgacat aggccacgta gaacatgctg gcgaccggct tgccgtcgtc
     3301 atcgcgcagg gtgagcgtgc cggccgtggc ggtgtagggg atggtcttgc catcgatggt
     3361 cacggtgtga tgcgaggtct tggcgacctc gataaccggg gcggtggcga tgtcgctgtc
     3421 gccgatcttg cgttcgctgg cctgggcggc gcgttcggag cggcgctcga cgaccgggcc
     3481 ggcggtggcc ggctcgtcgg aactgacgcg ggcggcccgg gccgcggcgg ccgggcgttc
     3541 gcccgagcgt tcgctcggcg cgggcggctg ggccagggcg acggtagcgg aa
//
LOCUS       DATAJL010000850         2471 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_109969,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000850 DATAJL010000000
VERSION     DATAJL010000850.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109969"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(55..813)
                     /locus_tag="VHN39_16175"
     CDS             complement(55..813)
                     /locus_tag="VHN39_16175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2817930.1"
                     /translation="MTDALAIRGLSKTFGGKVAVDNLSLNVRAGELYALLGPNGAGKT
                     TTLRMVAGLLKPNSGDIEVFGHDVATDPAGAKQIIAWAPDEPMLYDRLTPMEYLEFVA
                     GLWGVEAAVAAPKAEELLRWLGLWENRGEPCEGFSRGMKQKTALAGALIHDPQLLILD
                     EPLTGLDAGVARQVKDLLQARVKAGATVILTTHILEVAERMADRIGIIQNGRLVADGT
                     LDELRARTGEGHATLEDMFLELTGTGETAEGPQA"
     gene            complement(899..1780)
                     /locus_tag="VHN39_16180"
     CDS             complement(899..1780)
                     /locus_tag="VHN39_16180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX2817931.1"
                     /translation="MLWILLTAAAAPLQVARNALQRGLVGDAGPWGATLVRFLFGLPF
                     SLAIFGVIALATEGAAPHLSVRYVIAVNLGAVSQVAATAALLVAMRRSGFAVATMMQQ
                     ASLPFSALVGWLVLRDHISAQAWAGIVATTAGLAVLSWPRRDQIAGATLGTVLGLTSG
                     LAFAVALNAYRQAGVALEPHHPIYAGTASVCVAQAIQTTVLLAALAIWRPGSLLAVAR
                     SWRPSIGAGFFGAAASACWFAALAMAPAGPVRAIGVIEAPIAAAAGRRLFRERLSARQ
                     LAGGALAALGVVAIALG"
     gene            complement(1817..>2471)
                     /locus_tag="VHN39_16185"
     CDS             complement(1817..>2471)
                     /locus_tag="VHN39_16185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-isopropylmalate synthase regulatory
                     domain-containing protein"
                     /protein_id="HEX2817932.1"
                     /translation="GIHQDGMLKNRETYEIMTPESVGQAASSLVMGKHSGSHAFRAKL
                     KELGYELGQNALKEAFVRFKNLADKKKHVFDDDIIALVDDALASGADRIQVSKLRVIA
                     GTEGPQEAFLTITVDGEEVSANATGDGPVDAVFNAIRKCAPHEATLRLFQVHAVTEGT
                     DAQAQVSVRLEEDGRIATGQAADTDTLTASAKAYINALNNLTARKEKTDPGAIASGF"
BASE COUNT          374 a          872 c          865 g          360 t
ORIGIN      
        1 aaaacaggcg cagctcatgg cgcatcagcc agagcgtcga gcctgctggc gcgatcacgc
       61 ctgcggacct tcggcggtct cgcccgttcc ggtcagctcc aggaacatat cctccagcgt
      121 ggcgtggcct tcgccggtgc gggcgcgcag ctcgtcgagc gtgccgtcgg ccaccagccg
      181 gccgttctgg atgatgccga tgcggtcagc catccgctcg gccacttcca ggatgtgggt
      241 ggtcaggatc accgtcgccc cggccttcac ccgggcctgc aggaggtcct tcacctgccg
      301 cgccaccccg gcgtcgaggc cggtcagagg ctcgtcgagg atcagcagtt gcgggtcgtg
      361 gatcagggcg ccggccagcg cggtcttctg cttcatccca cgcgaaaacc cctcgcaggg
      421 ttcgccgcgg ttttcccaga ggcccagcca ccgcagcagc tcctcggcct tgggcgcggc
      481 gaccgcggcc tcgacgcccc agaggcccgc cacgaactcg agatattcca tgggtgtcag
      541 ccggtcgtag agcatgggct cgtccggggc ccaggcgatg atctgcttgg cgccggccgg
      601 atcggtcgcg acgtcgtggc cgaacacttc gatgtcgccg gaattgggct tcaggaggcc
      661 cgccaccatg cgcagggtcg tggtcttgcc cgcgccgttg gggcccagca gggcgtagag
      721 ttcgccggcc cggacattga gcgacaggtt gtccacggcg accttgccgc cgaaggtctt
      781 ggagaggcca cgaatggcga gcgcgtcagt catgcggaac ccctgaaccg ccgcgactat
      841 gtccgacccg gctagcgtcg gatagtcgcc gccccggacc tgattggatg cgggcggctc
      901 agccgagcgc gatggccacc accccaagag ccgccagggc gccccctgcc aactgccgcg
      961 ccgacaggcg ttccctgaag agcctacggc ccgccgccgc ggcgatgggg gcctcgatga
     1021 ccccgatggc gcgcaccggg ccggcgggcg ccatggccag cgccgcgaac caacaagccg
     1081 aggccgccgc gccgaagaaa cccgcgccga tcgagggccg ccacgatcgg gccaccgcca
     1141 ggagcgagcc cggccgccag atggccagcg ccgccagcag caccgtcgtc tggatcgcct
     1201 gggcgacgca gaccgaggcg gtgcccgcgt aaatcgggtg gtgcggctcc aaggccacgc
     1261 cggcctggcg ataggcgttg agcgccacgg cgaaggccag gcccgaggtg agccccagca
     1321 ccgtgcccag ggtcgcgccc gcgatctggt cgcgcctggg ccacgacagc acggccaggc
     1381 ccgccgtggt ggcgacgatg ccggcccacg cctgggcgct gatgtggtcg cgcagcacca
     1441 gccagccgac gagcgcggaa aagggcagcg aggcctgctg catcatggtc gccacggcga
     1501 agccggaacg gcgcatggcg accagcaggg cggccgtcgc ggcgacctgg gagaccgccc
     1561 ccaggttgac cgcgatgaca tagcgcaccg acagatgcgg cgccgcgccc tcggtcgcga
     1621 gcgcgatcac gccgaagatc gccagcgaga acggcaggcc gaacagaaag cgcaccaggg
     1681 tcgcgcccca cgggcccgcg tcgcccacca gcccgcgctg cagcgcgttg cgcgccacct
     1741 gcagcggcgc ggccgcggcc gttagaagga tccagagcat gtcaggacac gccggctcgc
     1801 ttgcgcgagc ccgcgatcag aacccgctgg cgatcgcgcc gggatcggtc ttttccttgc
     1861 gcgccgtgag gttgttgagc gcgttgatat aggccttcgc cgaggcggtg agcgtgtcgg
     1921 tgtcggcggc ctggccggtg gcgatgcggc catcctcctc tagccggacc gagacctgcg
     1981 cctgggcgtc ggtgccctcg gtgaccgcat gcacctggaa gagcctgagc gtggcctcgt
     2041 gcggggcgca cttgcggatg gcgttgaaca ccgcgtcgac cggcccgtcg ccggtggcgt
     2101 tggcggagac ttcctcgcca tcgacggtaa tggtcaggaa ggcctcctgc ggcccctcgg
     2161 tgccggcgat cacccgcagc ttgctgacct ggatgcgatc ggcgcccgaa gccagcgcgt
     2221 cgtccaccag ggcgatgatg tcgtcgtcga agacatgctt cttcttgtcg gccagattct
     2281 tgaagcggac gaacgcctcc ttcagcgcgt tctggcccag ctcgtaaccc aattctttca
     2341 gcttggcgcg gaaggcatgg ctgccggagt gcttgcccat gaccaggctg gaagcggcct
     2401 ggccgacgga ttccggcgtc atgatctcgt aggtttcgcg gtttttcagc atcccgtcct
     2461 ggtggatgcc g
//
LOCUS       DATAJL010000851         2724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_72829,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000851 DATAJL010000000
VERSION     DATAJL010000851.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2724
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72829"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..225
                     /locus_tag="VHN39_16190"
     CDS             <1..225
                     /locus_tag="VHN39_16190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HEX2817933.1"
                     /translation="ILLSVVSGGVDALSRSGSNNTALVIGSPAQAQNVAAIALQKQID
                     IPTTIKVAQGAPVQVSVARDLDFSGVAPVR"
     gene            304..1302
                     /gene="virB11"
                     /locus_tag="VHN39_16195"
     CDS             304..1302
                     /gene="virB11"
                     /locus_tag="VHN39_16195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043684 - type IV secretion system
                     complex [Evidence IEA];
                     GO_process: GO:0044097 - secretion by the type IV
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HEX2817934.1"
                     /translation="MTAGVYLEAYLAPLAPWLSRPDVTDVLINRPGEVWIETTDGTMS
                     REPADQLTEVALQRLARQIAAASHQGVNREQPLLSATLPDGARVQVVSPPATRGGLAM
                     AVRKHLLSDMSLEELSRDGLFEVAARSDPARDAAADADLEALLDAGDLIAFLKAAVRR
                     RKTMVISGGTASGKTTLLNALVKEIARTERLVVIEDAPEVRLDHPNAVGLVAVRGELG
                     EAQVGADALLAAALRLRPDRILLGELRGPEAFAWLRAVNSGHPGSITTVHADSPAGAL
                     DQIALLSLTSGVDLGWDKVRTYVERVVDVVVQLDRTQGARRMTEVLFNGRAAVAGL"
     gene            complement(1299..1928)
                     /gene="upp"
                     /locus_tag="VHN39_16200"
     CDS             complement(1299..1928)
                     /gene="upp"
                     /locus_tag="VHN39_16200"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEX2817935.1"
                     /translation="MKGVTIVDHPLVQHKLTLMRKKDTSIKSFRQLLKEIGGLVCYEV
                     TRDLPLETVEIETPMQAMTAPQLAGKKLVFAPILRSGMGMLDGMLDLVPAARVAHVGL
                     YRDPATLECVEYYFKAPADLADRQVIVIDPMLATGNTAIAAVDRLKEAGARSIRMACL
                     LASPEGISKFQGHHPGVRIWTAAVDERLNDHGYILPGLGDAGDRMYGTR"
     gene            complement(1937..2494)
                     /locus_tag="VHN39_16205"
     CDS             complement(1937..2494)
                     /locus_tag="VHN39_16205"
                     /inference="COORDINATES: protein motif:HMM:NF019570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1688 family protein"
                     /protein_id="HEX2817936.1"
                     /translation="MTSNRAPVILEVLLEALGPIWPGRLSLGGVPLGDCWRHPAIKRD
                     DPTDGYMPIHKLSQWLAYSLIEPLEAAGTQVVDIDGLTGLAEYRNGGLFVDCGVLSLS
                     DPEDAGRAHPVEGALVVGWRALTVALLDEIAPMVRERLGVSAESFPLARVLEGGTWAA
                     GRRIAASLRPGGGSPITVVSDGTVF"
     gene            complement(2491..>2724)
                     /locus_tag="VHN39_16210"
     CDS             complement(2491..>2724)
                     /locus_tag="VHN39_16210"
                     /inference="COORDINATES: protein motif:HMM:NF019570.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1688 family protein"
                     /protein_id="HEX2817937.1"
                     /translation="VLGRSEGLGIASFRMFEAGAMSADPADPLRADGLARVDAAALAQ
                     AFQVTHDNPLVGLDGRAALLRKLGEAIGRPAPP"
BASE COUNT          407 a         1038 c          899 g          380 t
ORIGIN      
        1 atccttttgt cggtggtctc cggcggagtc gacgccctgt cgcgcagcgg cagcaacaac
       61 accgccctgg tcatcggctc cccggcccag gcgcagaacg tggccgccat cgcgctccag
      121 aaacagatcg acatcccgac caccatcaag gtggcgcaag gcgcgccggt gcaggtctcc
      181 gtggcccgcg acctcgactt ctccggcgtc gccccggtcc ggtgaaatga ccctccttcg
      241 ccaaggcttc ggggggttca tcctccgcaa ggtcctccga agctccaatc ggagcgaagg
      301 aggatgaccg cgggcgtcta cctcgaggcc tacctcgcgc cgctggcgcc ctggctttcg
      361 cggccggatg tcaccgacgt cctgatcaac cgcccgggcg aggtctggat cgagaccacc
      421 gacggaacca tgagccgcga gcccgccgac cagctaaccg aggtcgccct gcagcgcctc
      481 gcccgccaga tcgccgccgc cagccaccag ggcgtcaacc gcgagcagcc gctgctctcc
      541 gcgaccctgc ccgatggcgc ccgcgtccag gtggtctccc cgccggccac ccgcggaggc
      601 ctcgccatgg cggtgcgcaa gcacctgctc tccgacatga gcctggagga gttgtcccgc
      661 gacggcctgt tcgaggtcgc cgcccgctcg gacccggccc gcgacgccgc ggccgacgcc
      721 gacctggagg ccctgctcga cgccggcgac ctgatcgcct tcctcaaggc cgccgtcagg
      781 cgccgcaaga ccatggtgat ctccggcggc acggccagcg gcaagaccac cctgctcaat
      841 gccctggtca aggagatcgc ccgcaccgag cggctggtgg tcatcgagga cgcgcccgaa
      901 gtccgcctcg accatcccaa cgccgtgggc ctggtggccg tgcgcggcga gctcggcgag
      961 gcccaggtgg gcgccgacgc cctgctggcc gccgccctga ggctgcgacc cgaccggatc
     1021 ctgctgggcg agctgcgcgg cccggaggcc ttcgcctggc tgcgcgccgt caattccggc
     1081 catcccggct cgatcaccac cgtccacgcc gacagcccgg ccggcgccct cgaccagatc
     1141 gcgctcctct cgctcacctc cggcgtcgat ctcggctggg acaaggtgcg cacctacgtc
     1201 gagcgcgtgg tcgacgtggt cgtccagctc gaccggacgc agggcgcgcg gcggatgacc
     1261 gaagtgctgt tcaacggccg tgcggcggtc gccggtctct aacgcgtgcc gtacatccgg
     1321 tcgccggcgt cgcccaggcc cggcaggatg tagccgtggt cgttcagccg ctcgtccacc
     1381 gccgcggtcc agatgcgcac gcccggatgg tggccctgga acttggagat cccctcgggc
     1441 gaggccagca ggcaggccat gcggatcgac cgcgcgccag cctccttcag tcggtcgacg
     1501 gcggcgatgg cggtgttgcc ggtcgccagc atgggatcga tgacgatcac ctggcggtcc
     1561 gccaggtcgg cgggcgcctt gaagtagtat tccacgcact ccagcgtcgc cgggtcgcgg
     1621 tagaggccca cgtgcgccac gcgggcggcc gggacaaggt ccagcatccc atccagcatc
     1681 cccatgccgg agcgcaggat cggcgcgaac accagcttct tgccggccag ttgcggcgcg
     1741 gtcatggcct gcatcggcgt ctcgatctcc accgtctcca gcggcaggtc gcgggtgacc
     1801 tcgtagcaga cgaggccgcc gatctccttc aggagctggc ggaagctctt gatggaggtg
     1861 tccttcttcc gcatcagcgt cagcttgtgc tgcaccagcg ggtggtcgac gatggtgacg
     1921 cccttcatgg gacctctcag aaaacggtgc cgtcgctgac gacggtgatc ggcgagccgc
     1981 cgccgggacg caggctcgcc gcgattcgcc gccccgccgc ccaggtgccg ccctccagca
     2041 cgcgcgccag cgggaaactc tcggccgaaa cgcccagccg ctcgcgcacc ataggcgcga
     2101 tctcgtccag cagggccacg gtcagcgcgc gccagccgac gaccagggcg ccctccaccg
     2161 gatgggcgcg tccggcgtct tcaggatcgc tcaggctcag aaccccgcaa tccacgaaga
     2221 gcccgccgtt gcggtattcc gccaggcccg tcaggccatc gatatcgacc acctgagtgc
     2281 ccgcggcctc cagcggctcg atcagcgaat aggcgagcca ctgggagagc ttgtggatcg
     2341 gcatgtagcc gtccgtcgga tcgtcacgct tgatcgcggg atggcgccag cagtcgccca
     2401 gcggcacgcc gccgaggctc aggcgccccg gccagatcgg ccccagcgcc tccagcaaga
     2461 cctcgaggat gaccggcgcc ctgttcgacg ttatggcggc gcgggccggc caatcgcctc
     2521 gccgagcttg cgcaacagcg ccgcgcggcc gtcgagaccc accagcggat tgtcgtgcgt
     2581 cacctgaaac gcctgcgcca gcgccgccgc atcgaccctc gccaacccat cggcccgcag
     2641 agggtcggcc ggatcggcgg acatggcgcc ggcctcgaac atccggaagg aggcgatgcc
     2701 gagcccctcg gaccgcccca gcac
//
LOCUS       DATAJL010000852         3267 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86514,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000852 DATAJL010000000
VERSION     DATAJL010000852.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86514"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1088
                     /locus_tag="VHN39_16215"
     CDS             <1..1088
                     /locus_tag="VHN39_16215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817938.1"
                     /translation="PTANRETQANLPRALELIGGALRRKPGDTGAIHFYIHATEMSGF
                     GGQAEAYADTLQRLAPAASHLTHMPSHTYYIVGRYEDAVRANQAAIKLDVANATRQGL
                     DGDPWKLTYHSHNVQFATGAALMSGDGSAALAQAKATFEHADRANRVGSFDQFVVGTA
                     YFAEARFAAPDEVLALTQPAADRGYLQAMWRYARGEAYARKADAAGVRRELAAIQTPT
                     ADMKALGSFSPQMGAMVDVAKLVLTGRAAMIDGKPADAARAFSTAAQIEDRVLGRLSD
                     PPGWWYPVRRSYAAALLEQGKADDAATQARLTLKTWPADPVTLAVLAQAERKLGDGKA
                     ADLHLAQARHGWHGLAALAAATALPAA"
     gene            complement(1085..>3267)
                     /locus_tag="VHN39_16220"
     CDS             complement(1085..>3267)
                     /locus_tag="VHN39_16220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="xanthine dehydrogenase family protein
                     molybdopterin-binding subunit"
                     /protein_id="HEX2817939.1"
                     /translation="YEGPLKVTGTAPYAYEVEPPSPPAYGVMVSASIAAGRITAIDTA
                     AAEASPGVKLVWTHLNVPAQGPRPERYDFFTPSPRPALQSDRIYYFGQQVAVVIADTL
                     ENAQAGAALVEVTYAADAPMADFHAHLDDGVQPPGESDVEIGDFAKGFAAAPVQIDDV
                     WRTPLQNHCQMEPCATTAWWEGDQLTVHTSVQMVRFAQNSLAETLMMPHKSVRLLTRY
                     VGGGFGGKGSFYEDLVLASLAARALSQPVKLAFTRQQMMHGTVHRPATEQRVRLGATK
                     DGRLTAMSIMTVTHCDSRGNFTEHASNFARNLYAAPNRLTGHRLVRMDLPVASAMRAP
                     GEASGTLSLEVAMDELAEKLGMDPVELRILNEPPTDPETGKPFSIRQLVRCMREGAQT
                     FGWDNRNPVPGSVRDGRWSVGLGMAAAIRGNFLLPAKASFTVDALGVITVKQGMTDIG
                     TGTYTVLAQIAAETLGVPLGDVRVEIGDSELPPAPGSGGQFGAATAGSAALDAGMNLR
                     KAIAEIAVADPASPLFGGPSEDITFQDGVIAIANRSERLADLIRRNRPEGLTAEGEVR
                     PAADASKWSSHTYGAHFVEVAVDTLTGETRTRRMLGVFAAGRILNWKTARSQLTGGMI
                     WGVGSALTEGNSVDPRHGSLINQDLAGYLVPVQADIGELDAIMLDEVDDKANPMGIKG
                     VGELGISGAGAAVANAIYNACGVRVRDYPITPDKLLAALGAKGL"
BASE COUNT          476 a         1111 c         1189 g          491 t
ORIGIN      
        1 ttcccaccgc caaccgcgag acccaggcca atcttccccg cgccctggag ctgatcggcg
       61 gcgcgctgcg gcgtaagccc ggcgacaccg gcgcgatcca cttctacatc cacgccaccg
      121 aaatgagcgg cttcggcggc caggcggaag cctatgccga caccctgcaa aggctcgccc
      181 ccgcggcaag ccatctcacc cacatgccct cgcacaccta ctacatcgtc ggtcgctatg
      241 aggacgcggt gcgcgccaat caggcggcga tcaagctcga cgtcgccaac gccacccgcc
      301 aggggctgga cggcgatccc tggaagctga cctaccattc tcacaacgtg cagttcgcca
      361 ccggtgcggc gctgatgagc ggcgacggct cggccgccct ggcgcaggcc aaggcgacgt
      421 tcgagcacgc ggacagggcc aatcgggttg ggtcgttcga ccagttcgtg gtgggtaccg
      481 cttatttcgc cgaggcgcgg ttcgccgccc cggacgaggt gctggccctg acgcaaccgg
      541 ccgccgaccg cggctatctg caggcgatgt ggcgctacgc gcggggcgag gcctatgcgc
      601 gcaaggcgga cgccgccggc gtccggcgcg agctggccgc gatccagact ccgacggccg
      661 acatgaaggc cctgggctcc ttcagcccgc agatgggcgc catggtcgat gtcgcgaagc
      721 tggtgctgac cggccgcgcg gcgatgatcg atggcaagcc cgccgacgcc gccagggcct
      781 tcagcacagc agcccagatc gaggaccgcg tcctgggccg ccttagcgat ccgcccggct
      841 ggtggtaccc ggtccgccgc agctatgccg ccgccctgct ggaacagggc aaagccgacg
      901 acgcggcgac gcaagcccgg ctgacgctga agacctggcc ggctgacccg gtgacgctgg
      961 ctgtcctggc ccaggccgag cgcaagctgg gcgacggcaa ggcggccgat ctgcacctgg
     1021 cgcaggcccg tcacgggtgg catggccttg ctgcgctggc cgccgcgaca gccttgcccg
     1081 cagcctaaag tcccttggcg cccagcgccg ccagaagctt gtccggggtg atcggatagt
     1141 cgcgcacgcg gacgccgcag gcgttgtaga tggcgttggc cactgccgcg ccggcgccgg
     1201 agatgccgag ttcgccgacc cccttgatgc ccatggggtt ggccttgtcg tccacctcgt
     1261 ccagcatgat ggcgtcgagc tctccgatgt cggcctggac cggcacaaga tagcccgcca
     1321 ggtcctggtt gatcagggag ccatggcgcg ggtcgacgct gttgccctcg gtgagcgccg
     1381 accccacgcc ccagatcatc ccgccggtca gctggctgcg ggcggtcttc cagttgagga
     1441 tgcggccggc ggcgaagacg cccagcatgc gccgggtgcg cgtttcgccc gttagagtgt
     1501 cgacggcgac ctcgacgaaa tgggcgccgt aggtgtgcga actccatttg ctggcgtcgg
     1561 cggccgggcg gacctcgccc tcggcggtca gaccctcggg ccggttgcgc cggatcaggt
     1621 cggccagccg ctcggagcgg ttggcgatgg cgatgacgcc gtcctggaag gtgatgtcct
     1681 cggaggggcc gccaaacagc ggcgaggccg gatcggcgac cgcgatctcg gcgatggcct
     1741 tcctgaggtt catgccggcg tcgagcgccg cggagcccgc ggtcgccgcg ccgaactggc
     1801 cgcctgagcc aggggccggc ggcagctccg agtcaccgat ttccacccgc acgtcgccca
     1861 agggcacgcc cagggtttcc gccgcgatct gggccaggac ggtgtaggtg ccggtgccga
     1921 tgtcggtcat gccctgcttg acggtgatca cgccgagggc gtcgacggtg aagctggcct
     1981 tggcgggcag caggaagttg ccgcggatgg cggcggccat gccgaggccg acgctccagc
     2041 ggccgtcgcg caccgagccc gggaccggat tgcggttgtc ccagccgaag gtctgcgcgc
     2101 cctcgcgcat gcagcggacc agttggcgga tcgagaatgg cttgccggtc tcggggtcgg
     2161 ttggcggctc gttgaggatg cgcagctcca ccgggtccat gccgagcttt tcggcgagct
     2221 cgtccatggc cacttcgagg ctgagcgtgc cggaagcctc gcccggcgcg cgcatggcgc
     2281 tggccaccgg caggtccatg cgcacgaggc ggtggccggt cagtcggttc ggcgcggcgt
     2341 agaggttgcg cgcgaagttc gaggcgtgct cggtgaagtt cccgcggctg tcgcaatggg
     2401 tgacggtcat gatcgacatg gcggtgagcc gcccgtcttt cgtggcgccc aggcggaccc
     2461 gctgctcagt cgccggccgg tggacggtgc cgtgcatcat ctgctgccgg gtaaaggcta
     2521 gcttgaccgg ctgggagagc gcgcgggccg ccagggaggc cagcaccagg tcttcgtaaa
     2581 acgatccctt gccgccgaag ccgccgccca catagcgggt gagcaggcgc accgacttgt
     2641 gcggcatcat cagggtctcg gcgagcgagt tctgggcgaa gcgcaccatc tggacggagg
     2701 tgtgcacggt cagctggtcg ccctcccacc aggcggtggt ggcgcagggc tccatctggc
     2761 agtggttctg caaaggcgtg cgccagacgt cgtcgatctg caccggggcg gcggcgaagc
     2821 ccttggcgaa gtcgccgatc tcgacgtcgg actcgccggg aggctgcacg ccgtcgtcca
     2881 gatgggcgtg gaagtcggcc atcggcgcat cggccgcata ggtcacctcg accagggcgg
     2941 cgccggcctg ggcgttttcc aaggtgtcag cgatcacgac cgccacctgc tggccgaagt
     3001 aatagatccg atccgactgc agcgccggcc gcggcgaggg ggtgaagaag tcgtagcgct
     3061 cggggcgtgg gccctgggcg ggcacgttga ggtgcgtcca caccagcttg acgcccggcg
     3121 aggcctcggc ggcggcggtg tcgatggcgg tgatccggcc ggccgcgatg ctggccgaga
     3181 ccatgacgcc ataggccggc ggcgacggcg gttcgacctc ataggcgtag ggcgccgtgc
     3241 ctgtgacctt caggggaccc tcgtagc
//
LOCUS       DATAJL010000853         3675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99436,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000853 DATAJL010000000
VERSION     DATAJL010000853.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3675
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99436"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..969
                     /gene="purT"
                     /locus_tag="VHN39_16225"
     CDS             <1..969
                     /gene="purT"
                     /locus_tag="VHN39_16225"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HEX2817940.1"
                     /translation="HLIVPEIEAIATDELARIEAAGLATVIPTARAAQLTMNREGIRC
                     LAAEELGLPTSAYAFASTEAELATGAATVGFPCFVKPVMSSSGKGQSYVEGPDGVAAA
                     WRYALESGRVEQARVIVEGRVAFDFEITQLTVRSLMDGQIVTSFCEPIGHRQVKGDYV
                     ESWQPQAMSPAALKASRDIARTVTEALGGQGLFGVELFVKGDQVWFSEVSPRPHDTGL
                     VTLATQYQSEFAIHARAILGLPVDVGLREPGASAVIYGGLEARGIAFEGVAEALAVPG
                     ADLRLFGKPESFTRRRMGVALARGADVDEARGRAAEAAGKVRPVSG"
     gene            1028..3088
                     /locus_tag="VHN39_16230"
     CDS             1028..3088
                     /locus_tag="VHN39_16230"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HEX2817941.1"
                     /translation="MRRLFAATAIAIIATSTLAAGALAAAPSAGKGGPAPLIERTKLF
                     GNPSRSAGRISPDGKWLSWLAPRDGMMNIWVAPVSDPTKARPLTAEKVRPIRSYFWSP
                     DASMILFINDKGGDENFLLYGVDVASGAQKSLTPFEKTRVEIFGQSRHAKDRLIVGLN
                     NRDARWHDAFSLDLKTGKLTLLLKNDGYGGFGVDEQLRIRTAFKPRPDGGTDVYRVEN
                     NVVAAKPDETIGFEDSDTNPVGFTTDGRTQYWIDTRGRDTAALVAQNMTTSKRTVVAQ
                     SPKADIDNAMVNPATGRIDAYSVNYLKAEWTALNPAIKPDLAFLKTRLKGEVSVTSRT
                     DADNLWTVAVDPVSGPATTYLYNRKAKTLTKLFTGRPELETATLAAMHPVQIKTRDGL
                     TEVSYLTLPPGSDSKGTGVPDHPVPMVLLVHGGPWARDAYGYNGLHQWLANRGYAVLS
                     PNYRASSGFGKSYEAAGNLQWGLKMHDDLIDAVDWAVKKGVTSRDKVAIMGGSYGGYA
                     TLAGMTFTPDRFACGVDIVGPSNLNTLLEAIPAYWTSGREQMYRRMGDPRTPAGQAVL
                     KAASPLFKADAISKPLLIGQGANDPRVNQREAGQIVAAMKAKSIPVTYILFPDEGHGF
                     ARPENNIAFYAISEQFLAKCLGGRAEPYGKAFAGSSITSPYGAEFAPGFAEALAAHSS
                     AGGK"
     gene            3217..>3675
                     /locus_tag="VHN39_16235"
     CDS             3217..>3675
                     /locus_tag="VHN39_16235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde 3-phosphate dehydrogenase
                     NAD-binding domain-containing protein"
                     /protein_id="HEX2817942.1"
                     /translation="MTVRVAINGFGRIGRLVLRSIVEHGRTDIEVVAINDLGPVETNA
                     HLLRYDSVHGRFPGTVTTGEDWIDAGFGKIKVTAIRDPKDLPHAALKVDIALECTGLF
                     TTREKAAAHLTAGAKRVIVSAPADGVDKTIVYGVNHDGLTADDLVISNASC"
BASE COUNT          618 a         1331 c         1205 g          521 t
ORIGIN      
        1 cacctgatcg tcccggaaat cgaggccatc gccaccgacg agctcgcgcg gatcgaggcg
       61 gcgggcctgg ccacggtgat cccgaccgcg cgggcggccc agctgaccat gaaccgcgaa
      121 ggcatccgct gtctcgccgc cgaggagctc ggcctgccca ccagcgccta cgccttcgcg
      181 tccacggagg ccgaactggc gaccggcgcc gcgacggtcg gcttcccctg tttcgtgaag
      241 ccggtgatga gctcctccgg caagggccag tcctacgtgg agggcccgga cggcgtcgcc
      301 gcggcctggc gctatgcgct tgagagcggc cgcgtcgagc aggcccgggt gatcgtcgag
      361 ggtcgggtgg ccttcgactt cgagatcacc cagctcaccg tccgcagtct gatggacggc
      421 cagatcgtca ccagcttctg tgagcccatc ggccaccgcc aggtgaaggg cgactatgtg
      481 gagagctggc agccgcaggc catgagcccg gccgcgctga aggcgtcgcg cgacatcgcc
      541 cgcacggtga ccgaggctct gggcggccag ggcctgttcg gcgtcgagct gttcgtgaag
      601 ggcgatcagg tgtggttttc cgaagtcagc ccgcgcccgc acgacaccgg cctggtgacg
      661 ctggccacgc aataccagag cgagttcgcc atccacgcgc gcgccatcct gggcctgccg
      721 gtggacgtgg gcctacgcga gccgggcgcc agcgcggtga tctatggcgg gctggaggcc
      781 aggggcatcg ccttcgaagg cgtcgccgag gccctggccg tcccgggcgc ggacctgcgc
      841 ctctttggca agccggagag cttcacacgc cgccgcatgg gggtggcgct ggcccgcggc
      901 gcggacgtcg atgaggcccg agggcgcgcc gccgaggctg ccggcaaggt ccgtccggtc
      961 tcgggctagc gacggccttg cggcaggctt accatccgtc ccaggacgtt tcctggggag
     1021 gatcatcatg cgccgcctgt tcgccgcgac cgccatcgcc atcatcgcca cctcaaccct
     1081 ggccgccggg gcgttggccg cggccccttc tgcagggaaa ggtgggcccg cgccgctgat
     1141 cgagcgcacc aagctgttcg gcaaccccag ccgcagcgcc ggccgcatca gcccggacgg
     1201 caagtggctc tcctggctcg cgcctcgcga cgggatgatg aacatctggg tcgcccccgt
     1261 gagcgatccg accaaggccc ggccgctgac cgccgagaag gtgcggccga tccgcagcta
     1321 cttctggtcg cccgacgcct cgatgatcct gttcatcaac gacaagggcg gtgacgagaa
     1381 cttcctgctc tacggcgtcg acgtcgcctc gggcgcccag aagtccctga cccccttcga
     1441 gaagacccgc gtcgagatct tcggccagag ccggcatgcg aaggaccgcc tgatcgtcgg
     1501 tctcaacaac cgcgacgccc gctggcacga cgccttcagc ctcgacctga agaccgggaa
     1561 gctgaccctc ctcctcaaga acgatggcta cggcggcttt ggcgtcgacg aacagttgcg
     1621 catccgcacg gccttcaagc cgcgccccga cgggggaacc gacgtctacc gcgtcgagaa
     1681 caacgtggtc gccgccaagc ccgacgagac catcggcttc gaggattccg acaccaaccc
     1741 ggtgggcttc accaccgacg gcaggaccca gtactggatc gacacccgcg gccgcgacac
     1801 cgcggccctg gtcgcccaga acatgacgac cagcaagcgc accgtggtcg cccagagccc
     1861 caaggccgac atcgacaacg ccatggtcaa tccggcgacg ggcaggatcg acgcctattc
     1921 ggtgaactac ctgaaggccg aatggaccgc gctcaacccg gccatcaagc cggacctggc
     1981 gttcctcaag acccggttga agggcgaggt ctcggtcacc tcgcgcaccg acgccgacaa
     2041 cctctggacc gtggccgtcg atccggtcag cggaccggcc accacctacc tctacaaccg
     2101 caaggccaag accctcacca agctcttcac cggccgaccg gagctggaga cggcgacgct
     2161 ggcggccatg catccggtgc agatcaagac ccgcgatggg ctgaccgagg tctcctacct
     2221 gaccttgcct ccgggcagtg actcaaaagg gaccggcgtt cccgaccatc ccgtccccat
     2281 ggtcctgctg gtgcacggcg gcccctgggc gcgcgacgcc tatggttata acggcctgca
     2341 ccagtggctg gcgaaccgcg gctacgcggt gctgtcgccc aactaccggg cctcctccgg
     2401 tttcggaaag tcgtacgagg ccgccggcaa ccttcagtgg gggctgaaga tgcacgacga
     2461 cctgatcgac gccgtcgact gggccgtgaa gaagggcgtc accagccgcg acaaggtggc
     2521 gatcatgggc ggctcctacg gcggctacgc caccctggcg ggcatgacct tcacgcctga
     2581 ccgcttcgcc tgcggcgtcg atatcgtcgg cccctccaac ctcaacaccc tcttggaggc
     2641 gatcccggcc tactggacct cggggcgcga gcagatgtac cggcggatgg gcgatccccg
     2701 cacgccggcg ggccaggcgg tgctgaaggc ggcctcgccg ctcttcaagg ccgacgccat
     2761 ctccaagccg ctcctgatcg gccagggcgc caacgacccc cgggtcaacc agcgcgaggc
     2821 cggccagatc gtggcggcca tgaaggccaa gagcatcccg gtgacctaca tcctgttccc
     2881 cgacgagggc cacggcttcg cgcggccgga gaacaacatc gccttctacg ccatcagcga
     2941 gcagttcctg gccaagtgcc tgggcggccg cgcggagccc tatggcaagg ccttcgccgg
     3001 ctcgtcgatc acctcgccct acggcgccga attcgcgccg gggttcgccg aggcgctggc
     3061 ggcccacagc tcggctgggg ggaagtagac ccggcggccg cgacgggcct cggcggacag
     3121 gcgtcacaat cgattgccca acttgaccgg ccgaggggtt gacttaggac ccctcggccc
     3181 caaaaacgcg cgcacttcaa tgaggagtcc ctgcgcatga ccgtccgcgt cgccatcaat
     3241 ggtttcggcc gtatcggcag gctggtcctg cgctcgatcg tcgaacatgg gcggaccgac
     3301 atagaggtcg tggcgatcaa cgacctgggt ccggtggaga ccaacgccca cctgctgcgc
     3361 tacgacagcg tgcacggccg cttccccggg accgtcacca ccggcgagga ctggatcgat
     3421 gcggggttcg gcaagatcaa ggtcaccgcg atccgcgacc ccaaggacct gccgcacgcc
     3481 gcgctgaagg tcgacatcgc gctggagtgc accgggctct tcaccacccg cgagaaggcc
     3541 gccgcccacc tgacggccgg agccaagcgg gtgatcgtct ccgcccccgc cgacggggtc
     3601 gacaagacca tcgtctacgg ggtgaaccac gacggcctga ccgccgacga cctggtgatc
     3661 tccaacgcgt cgtgc
//
LOCUS       DATAJL010000854         1517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99443,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000854 DATAJL010000000
VERSION     DATAJL010000854.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99443"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            201..575
                     /locus_tag="VHN39_16240"
     CDS             201..575
                     /locus_tag="VHN39_16240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817943.1"
                     /translation="MADPTSFYTGWLVDPAEREALLTRFPPRYVTVVAHHVTLKFGDR
                     AAQAPGEVGARIVGAADDGSGVQALVVAIDGSTARPDGGTFHITWSLADDREARESND
                     VIAARGWTPLGPPVPVRLIPKA"
     gene            677..949
                     /locus_tag="VHN39_16245"
     CDS             677..949
                     /locus_tag="VHN39_16245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020808295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="usg protein"
                     /protein_id="HEX2817944.1"
                     /translation="MQASPEFRKQLAGYGLTTAEILYRMPDHPALLQSYIWQDYDLFP
                     EFPVLKGFLDFWTRTLEGPLFKVTVGHCRLIKPAELRALGGEFHLH"
     gene            1038..>1517
                     /locus_tag="VHN39_16250"
     CDS             1038..>1517
                     /locus_tag="VHN39_16250"
                     /inference="COORDINATES: protein motif:HMM:NF012706.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX2817945.1"
                     /translation="MRTPLIAVLACAAALAFAGCQSKTVQRPACPAGQVCLEYGNETE
                     PLTLDPQTSNLVSESRIVGDLMMGLVTEAPDASPQPGMATSWETSLDGLTWTFHLRDA
                     RWSDGAPVTADDFVYAYRRILDPKTASIYAYLVTLLKNGKAVNDGKAPLSAIGARALD
                     "
BASE COUNT          239 a          544 c          492 g          242 t
ORIGIN      
        1 gcatcaggtc gaaccaggtg aacttcatgg cgtcggctcc gggcaggccg cccccaacgc
       61 aatccactac ggtttgcgtt gctaggtttc agtctgaaac ctgaccgtct gtcaggtttc
      121 ggcgagcggt ctcctgaacg acgataaccc ttccgcgccg ggcgccaacc ggggaatcgg
      181 cgctagactg gagggcgacc atggccgatc ccacatcctt ctacaccggc tggctggtgg
      241 atccggctga gcgcgaggcg ctgctcacgc ggttcccgcc gcgctatgtg accgtcgtcg
      301 cccatcacgt gacgctgaag ttcggcgacc gcgcggccca ggcgccgggc gaggtcgggg
      361 cccggatcgt cggggcggcc gacgatggct cgggcgtgca ggccctggtc gtggccatcg
      421 acggcagcac ggcgcggccc gacggcggaa cctttcacat cacctggtcg ctggcggacg
      481 accgcgaggc gcgggagagc aacgacgtca tcgccgcgcg gggctggacc ccactgggcc
      541 cgcccgtccc cgtacgcctg atcccgaagg cctaagcagc agtcccgctt gttgagtgct
      601 aactcactgt atttacggcg acttgtttac gaatcacggc taggcttcat gcgtacaggg
      661 agcattgagg tcggccatgc aggcgtcgcc cgaattccgc aagcagctgg cgggctatgg
      721 cctgaccacc gccgagattc tctaccgcat gcccgaccac ccggccctgc tgcagagcta
      781 catctggcag gactacgacc tcttcccgga gttcccggtg ctcaaaggct tcctcgactt
      841 ctggacccgc accctggagg ggccgctgtt caaggtgacc gtcggccact gccggctgat
      901 caagcccgcc gaactgcggg cgctcggcgg cgagttccac ctgcactgac gcgggccccc
      961 gcggcccgca gggagcgatc tcgacatttt cccgaacgcg ggggagtgat gggcctcgtc
     1021 ccgcccggag gccctccttg cgaacgccgc tgatcgccgt cctggcctgc gccgcggccc
     1081 tcgcgttcgc cggctgccag agcaagacgg tccagcggcc cgcctgcccg gccggccagg
     1141 tctgcctgga gtacggcaac gagaccgagc ccctgacgct cgatccccag acctcgaacc
     1201 tagtcagcga gtcccgcatc gtcggcgacc tgatgatggg cctggtcacc gaggcgccgg
     1261 acgccagccc gcagcctggc atggcgacct cctgggagac gagcctcgac ggcctgacct
     1321 ggacctttca cctgcgcgac gccaggtggt cggacggcgc gccggtaacc gccgacgact
     1381 ttgtctacgc ctatcgccgg atcctcgatc cgaagaccgc ctcgatctac gcctacctcg
     1441 tcaccctcct gaagaacggc aaggcggtga acgacggcaa ggccccgctg agcgcgatcg
     1501 gcgctcgggc gctggat
//
LOCUS       DATAJL010000855         4346 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99472,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000855 DATAJL010000000
VERSION     DATAJL010000855.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4346)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4346)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4346
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99472"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1594
                     /locus_tag="VHN39_16255"
     CDS             <1..1594
                     /locus_tag="VHN39_16255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M28 family metallopeptidase"
                     /protein_id="HEX2817946.1"
                     /translation="ISPARLSADVKVLADAKLAGRAPGGPGEAGTLAYIVSQFKAAGL
                     KPAGDKGGWTQSVPLIRFTVAPDKNRFQLTSGGSTRDLAETRDVMIWSQRPVPRVQVE
                     KAPMVFVGYGVTAPERGWDDFKGVDLKGKIAVILINDPDFEALPTDPVAGKFGGKAAT
                     YYGRWIYKFEEAARRGALGAIIVHETAGAAYGWSTVVASNGDSYDVVRPDPAKVHPLL
                     QGWMQRDLAVELFKASGLDFEAEKVRARTAGFRPVPLKGAAFSADYTIALHRLTSHNV
                     LGAIPGAQRPNESVMFAAHWDAFGQGPADATGDTVRHGAADDGIGVAGVLEIARAFAK
                     GPKPQRTVAFGVWTAEERGLLGSEYYAANHPKFPLATTAGNFTMDVVETAGPSRDLVL
                     VGSGKDSLEADMAKAARAQGRTITPDPHPEKALFYRADHFSVAKRGVPTVLIMGMAGG
                     PDLISGGREAGERWVNDYTAKCYHQVCDDWSANWDLRGAAQDIDLLYEVGRKLANSKQ
                     WPTWNAGSEFKQLREATAAQRK"
     gene            1701..2318
                     /locus_tag="VHN39_16260"
     CDS             1701..2318
                     /locus_tag="VHN39_16260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817947.1"
                     /translation="MMKPAAAAFAALALTATAALAQPPAPATPPTPTVVRGTVTAMTD
                     TSLTVKTDKGPQVVNLTPSWSVAMTKAVAIDAIQPGSFIGTTEMPKADGQGESLEVHV
                     FPPGVKMGEGHYGWDLKPGSMMTNGTVGTVVTGKKGSRELDVSYSYGQRHITVPANVP
                     VVQIGPGKREMVKVGVPVFMVVGKTPNGMMTNSVSVGENGAKPPM"
     gene            2473..3159
                     /locus_tag="VHN39_16265"
     CDS             2473..3159
                     /locus_tag="VHN39_16265"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2817948.1"
                     /translation="MATACAFGLASAAHAKTITATFTGTIYITFGDVQGFGLPSNQLI
                     GQAVKAVYTVDDAKGFSAFDAPFSSQIFGGPAFGTASPVAAAITVNGVTVEIDGSFSS
                     QAHQFAPPSGQSSVSYISQDRTLLTSGFYDVFSTDGAFSSTDGFVKSYDYHVAPGVVP
                     LPDISVGLFGENLFDQSNNLVSFAQFAWSPTSLTITAQGVPEPSTWALMLAGFGMAGA
                     ALRRRTQATG"
     gene            3357..4139
                     /locus_tag="VHN39_16270"
     CDS             3357..4139
                     /locus_tag="VHN39_16270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEX2817949.1"
                     /translation="MTEATAPPPIPAKPNPFVGPAILIVWLALGAVLLVQPSGLVVFA
                     FVMVGWILSVMVHEFSHAATAWLGGDRTVVEKGYLSFDPRRYGDLGVSLVIPLLALVM
                     GGIGFPGGAVYIRNDLIRSRLWRSATALAGPAATLVILLALTFGLMVWADVGVSGAAI
                     ELFEALTVLAFLQAMGLILNLLPIPGLDGFGAIRPFLPASLTPHIRKAEGLVMVGLLL
                     VIFWVPGASAALFRSAATLGALLGLNLDALQAGWHAFHFWQR"
     gene            4164..>4346
                     /locus_tag="VHN39_16275"
     CDS             4164..>4346
                     /locus_tag="VHN39_16275"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX2817950.1"
                     /translation="MLLRRTLLALAAAVTLATAAPLSQAWGQAPNPRVIITTAVGTIT
                     VELAADKAPITTANFLK"
BASE COUNT          698 a         1585 c         1382 g          681 t
ORIGIN      
        1 gatctcgccc gcccgcctct ccgccgatgt gaaggtgctg gcggacgcca agctcgccgg
       61 ccgcgcgccc ggcgggcccg gcgaggcggg gacgctcgcc tacatcgtct cccagttcaa
      121 agccgccggc ctcaagccgg caggcgacaa gggcggctgg actcagtcgg tgccgctgat
      181 tcgcttcacc gtcgcgcccg acaagaaccg tttccagctc acgtcggggg gctccacacg
      241 ggacctcgcc gagaccaggg acgtgatgat ctggtcccag cgcccggtcc cgcgcgtcca
      301 ggtggagaag gccccgatgg tcttcgtggg ctatggcgtc accgccccgg agcgcggctg
      361 ggacgacttc aagggcgtgg atctcaaggg caagatcgcc gtcatcctga tcaacgaccc
      421 ggacttcgag gccctgccca ccgaccccgt cgccggcaag ttcggcggca aggccgccac
      481 ctactacggc cgctggatct acaagttcga ggaggccgcc cggcgcggcg cactgggcgc
      541 gatcatcgtt cacgagacag cgggcgccgc ctatggctgg tccaccgtcg tggcctccaa
      601 cggtgacagc tacgacgtgg tccgtccgga cccggccaag gttcacccgc tgctgcaggg
      661 ctggatgcag cgcgacctgg ccgtcgagct cttcaaggcc tccggtctcg acttcgaggc
      721 cgagaaagtc cgtgcacgga ccgctggctt caggcccgtc ccgctgaagg gcgcggcctt
      781 ctccgccgac tacaccatcg ccctgcaccg tctcaccagc cacaacgtcc tgggcgcgat
      841 ccccggcgcc cagcgcccca acgagagcgt catgttcgcc gcccactggg acgccttcgg
      901 ccagggtccg gcggacgcga ccggcgacac cgtgcgccac ggcgccgccg acgacggcat
      961 cggcgtggcg ggcgtgctgg agatcgcccg cgccttcgcc aaggggccga agccgcaacg
     1021 gacggtcgcc ttcggcgtct ggaccgcgga agagcgcggc ctgctgggca gcgaatatta
     1081 cgccgccaac cacccgaaat tccccctggc caccaccgcc ggcaacttca ccatggacgt
     1141 ggtcgagacc gcgggcccca gccgcgacct ggtgctggtg ggctcgggca aggattcgct
     1201 ggaggccgac atggccaagg ccgccagggc gcagggccgg accatcacgc ccgacccgca
     1261 tccggaaaag gcgctcttct accgagccga ccacttcagc gtcgccaagc gtggcgtgcc
     1321 gacggttctg atcatgggca tggccggggg tccggacctg atctcgggcg gccgcgaggc
     1381 cggcgagcgc tgggtcaatg actacaccgc caagtgctac catcaggtct gcgacgactg
     1441 gagcgccaac tgggacctgc gcggcgccgc ccaggacatc gacctgctct acgaggtcgg
     1501 ccgcaagctg gccaattcga agcagtggcc cacctggaac gccggctccg agttcaagca
     1561 gctccgcgag gcgaccgcgg cccagcggaa atagccgcgc cgggcgctgg gcgcgcactt
     1621 gacgttgacg tcaaccacgc cgcttcgtat ctgccgaggt gaacggcgtt cagcttgagc
     1681 gtcggcaaag ggaaacgtcc atgatgaaac ccgccgccgc ggccttcgcc gccctcgcgc
     1741 tcaccgccac cgccgcgctc gcccagccgc ccgctccggc cacgccgccc acgcccaccg
     1801 tggtgcgcgg cacggtcacc gccatgaccg acacctcgct gaccgtgaag accgacaagg
     1861 gcccgcaggt cgtgaacctc accccctcat ggtcggtcgc catgaccaag gccgtcgcca
     1921 tcgacgccat ccagcccggc agcttcatcg gcaccaccga gatgcccaag gccgacggcc
     1981 agggcgagag cctggaagtc cacgtcttcc cgcccggcgt gaagatgggc gagggccact
     2041 atggttggga cctgaaaccc ggttcgatga tgaccaacgg cacggtcggc accgtcgtca
     2101 ccggcaagaa gggctcgcgc gagctcgacg tctcctactc ctacggccag cgccatatca
     2161 ccgtgcccgc caacgtgccg gtcgtgcaga tcggccccgg caaacgcgag atggtcaagg
     2221 tcggcgtccc ggtcttcatg gtcgtcggca agacgccgaa cggcatgatg accaactccg
     2281 tctcggtcgg ggaaaacggc gccaagccgc cgatgtaggg cgctagaact atccacaatt
     2341 ccgcccatcc ccgcgaaggc ggggacccag acgatcgcga accagctagc caagagcgcg
     2401 ccgccaaggc acactcagcg cgcgcagtcg gcgcgtttga ctatgggggg ttgtgtgaga
     2461 agcttattgg ccgtggcgac ggcgtgcgcg tttggtctgg cctcggccgc tcacgcgaaa
     2521 acgatcaccg caacctttac cggaacgatc tacatcacct ttggcgacgt ccagggcttc
     2581 ggattgccga gcaaccagct catcggacag gccgtcaagg ccgtctatac ggttgacgac
     2641 gccaagggct tcagcgcctt cgacgcgccg ttttcctccc agatcttcgg cggaccagct
     2701 tttggaaccg cctccccggt cgccgcagcc atcaccgtga acggcgtgac ggtagagatc
     2761 gacggctcct tttcatcgca agcccaccaa ttcgcgccgc caagcggaca atcgtcagtt
     2821 tcgtacatat cccaggaccg aactcttctc acttcggggt tctacgatgt tttctcgacc
     2881 gatggcgcgt tcagcagcac ggacggcttc gtgaagagct atgactatca cgtcgcgccc
     2941 ggtgtggtgc cgctgcccga catcagcgtt gggctcttcg gcgaaaacct gttcgaccaa
     3001 tccaacaacc tggtctcatt cgcccagttc gcctggtcgc caacctcgct gaccatcacg
     3061 gcgcagggcg tccccgagcc ctcgacctgg gcactgatgc tcgcaggctt cggcatggca
     3121 ggcgcggccc tgcgtcgtcg cacacaggct acgggctgac cccgaggagt tgcggcgaca
     3181 ggtactcctg tcccaatccg acgcccaaga accccgtgat ggcggaccga cagcacgcct
     3241 ggagccgttg ttttccgcgg ttcaaaaata cttgcctccg agtcggagtt caccctccgg
     3301 tcggcttagc cgagcccggg ggcgggtgag tggaggagat gtgctaggca gggcgcatga
     3361 ccgaagccac ggccccgccg ccgattcccg caaagcccaa ccccttcgtc ggaccggcga
     3421 tcctcatcgt ctggctggcc ctgggcgcgg tgctgctggt ccagcccagc gggctggtgg
     3481 tcttcgcctt cgtcatggtg ggctggatcc tgtcggtgat ggtccacgaa ttcagccacg
     3541 cggccacggc ctggctgggc ggcgaccgca cggtcgtgga gaagggctac ctgtccttcg
     3601 acccgcgccg ctacggcgac ctgggcgtca gcctggtgat cccgctgctg gcgctggtca
     3661 tgggcggcat cggcttcccg ggcggggcgg tctatatccg caacgacctg atcaggagcc
     3721 gcctctggcg ctcggcgacc gcgctggccg gacccgcggc gaccctggtc atcctgctgg
     3781 cgctcacctt cgggctcatg gtctgggcgg acgtcggcgt cagcggggcc gccatcgaac
     3841 tcttcgaggc cctgacggtg ctcgccttcc tgcaggccat ggggctgatc ctcaacctgt
     3901 tgccgatccc cggcctcgac ggcttcggcg ccatccgtcc cttcttgccg gccagcctca
     3961 ccccgcacat ccgcaaggcc gagggcctgg tgatggtggg cctgctcttg gtgatcttct
     4021 gggtccccgg cgccagcgcc gccctgttcc ggtccgccgc cacgctcggc gccctgctcg
     4081 gcctgaacct cgacgccctg caggccggct ggcatgcgtt ccacttctgg cagcgatagc
     4141 taggcgcggg taagctcgcg gccatgctcc tgcgccgcac cctcctcgcc ctcgccgccg
     4201 ccgtgacact cgccacggcc gcgcccctct ctcaggcttg gggccaggcc ccgaacccgc
     4261 gggtgatcat caccacggcc gtaggcacga tcaccgtcga actcgccgcg gacaaggcgc
     4321 cgatcaccac ggccaatttc ctgaag
//
LOCUS       DATAJL010000856         1909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86592,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000856 DATAJL010000000
VERSION     DATAJL010000856.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86592"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..750)
                     /locus_tag="VHN39_16280"
     CDS             complement(<1..750)
                     /locus_tag="VHN39_16280"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004618746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX2817951.1"
                     /translation="MATDVPPDPPLEGDEEDALGVRIVAVGPEAAAGRIDKVLADLLP
                     DMSRARVQALIAQGRVSRDGAAVTDASAKAQPGDYRFEVPPPEAAEPVPEAIPLTVLY
                     EDAYLIVVDKPPGMAVHPAPGSSSGTLVNALLHHCGASLSGIGGVARPGIVHRIDKDT
                     SGIVVAAKTDAAHQGLSALFAAHDIERTYIALTRGAPRAGLQGARGTIEGAIGRSSAD
                     RKKMALVRSGGRHAITHYVTERVFGPADKPLA"
     gene            complement(740..1057)
                     /locus_tag="VHN39_16285"
     CDS             complement(740..1057)
                     /locus_tag="VHN39_16285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HEX2817952.1"
                     /translation="MSSEGLHVPREKLKGKTLNLHYAITSLIEEFEAVDWYRQRADDC
                     DDPTLEAILRHNAREELEHASMVLEWLRRNDAEVNEQLTEYLFKKGSITGHEEAATGK
                     NGD"
     gene            1134..>1909
                     /locus_tag="VHN39_16290"
     CDS             1134..>1909
                     /locus_tag="VHN39_16290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEX2817953.1"
                     /translation="MRMDRRRALVLLGLGAAAPATGARARGAPSFQHGVASGDPLQDR
                     VMLWTRITARGSDDVAYRWMLDPVDRKGGGKRGSGVTGADRDFTVKVDVTNLDPGRAY
                     NFQFEAGGVKSPVGRTRTLPDGPTKDAVLAVCTCALYPNGYFNAYGAIAKLARVDAVV
                     HLGDYIYEYGGSGSYGMDSPVAGERPHDPSHECVSLADYRRRHAQYKTDPQLQAAHAR
                     APWIVVWDDHETANDSWIGGAENHQPATEGDWNVRKAAAI"
BASE COUNT          272 a          648 c          700 g          289 t
ORIGIN      
        1 ggcgagcggc ttgtccgccg gcccgaagac ccgctcggtg acgtagtggg tgatggcgtg
       61 gcgtcctccg gacctgacca gggccatctt cttgcggtca gccgaggagc ggccgatggc
      121 gccctcgatg gttccccgag cgccctggag gcccgcgcgc ggcgccccgc gggtgagcgc
      181 gatgtacgtc cgctcgatgt cgtgggcggc gaagagggcc gagagcccct ggtgggcggc
      241 gtcggtcttg gcggcgacga cgatgccgga ggtgtccttg tcgatgcggt gcacgatgcc
      301 gggccgcgcc accccgccga tgcccgacag gctcgccccg cagtgatgca gcagggcgtt
      361 gaccagggtg ccgctggagc tgccgggcgc cggatggacg gccatgcccg gcggcttgtc
      421 gaccacgatc aggtacgcgt cctcgtagag gacggtcagt ggaatcgcct cggggaccgg
      481 ctcggcggcc tcgggcggtg ggacctcgaa gcggtaatcg cccggctggg ccttggcgga
      541 ggcgtcggtg acggccgcgc catcgcggct gacgcggccc tgggcgatca gcgcctggac
      601 ccgggcgcgg gacatatccg gcagcaggtc ggccaggacc ttgtcgatgc ggccggccgc
      661 ggcctccggg cccacggcga cgatgcggac cccgagggcg tcctcttcgt caccctcaag
      721 aggagggtcc ggcggaacgt cagtcgccat tcttgccggt ggcggcctct tcgtggccgg
      781 tgatcgagcc cttcttgaag aggtactccg tcagctgctc gttcacctcg gcgtcgttgc
      841 ggcgcagcca ttcgagcacc attgaggcgt gctcaagctc ctcgcgggcg ttgtggcgca
      901 ggatggcctc cagcgtcgga tcgtcgcaat cgtcggcgcg ctgacggtac cagtcgaccg
      961 cctcgaactc ctcgatcagc gaagtgatgg cgtaatgcag gttgagggtc ttgcctttga
     1021 gcttttcgcg gggaacatga aggccttcgc tggacacggg gtgtggttct cctctgctgt
     1081 cggcgtcttc caatacgtgg tcgcgggatc aagcgcgagg ccgggggcga catatgcgaa
     1141 tggataggcg cagagcgctg gtcctgctgg ggctgggagc cgcggcgccg gcgaccgggg
     1201 cccgcgcccg cggcgcgccg tccttccagc acggcgtggc ctccggcgac cccttgcagg
     1261 accgggtgat gctgtggacg cggatcaccg cccgcggctc ggacgacgtg gcctaccgct
     1321 ggatgctgga tccggtagac cgcaagggcg gcggcaagcg cggctcgggc gtcacggggg
     1381 cggaccgcga tttcacggtc aaggtggacg tgaccaacct cgaccccggc cgggcctaca
     1441 acttccagtt cgaggcgggc ggggtgaagt cgcctgtggg ccgcacccgg accctgccgg
     1501 acgggccgac caaggacgcg gtgctcgccg tctgcacctg cgctctctat cccaacggct
     1561 atttcaacgc ctacggcgcc atcgccaagc tggcccgcgt cgacgccgtc gtccacctgg
     1621 gcgactacat ctatgagtac ggcggctcgg ggtcctacgg catggactca cccgtcgcgg
     1681 gcgagcgccc gcacgacccg agccatgagt gcgtcagcct cgccgactac cgccgccgcc
     1741 acgcccagta caagaccgac ccgcagctgc aggccgccca cgcgcgcgcg ccatggatcg
     1801 tggtctggga cgaccacgag accgccaacg acagctggat cggcggggcg gagaaccatc
     1861 agccagccac cgagggcgac tggaacgtcc gcaaggccgc ggcgatcaa
//
LOCUS       DATAJL010000857         1546 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_72965,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000857 DATAJL010000000
VERSION     DATAJL010000857.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72965"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(76..1224)
                     /locus_tag="VHN39_16295"
     CDS             complement(76..1224)
                     /locus_tag="VHN39_16295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2817954.1"
                     /translation="MALDAETREQLIDTVRRFVAERLRPLEAKVSEDDAIAQDVLDEM
                     KALGLYGLSIPEEYGGLDLSMEDECLVAVELGRTSPAFRSAFGTNVGIGSQGLCMFGT
                     DAQKEKYLPGIASGEIITSFALTEPEAGSDSANVQTRAFLDGDAYVLNGSKRFITNAN
                     KADLFTVMARSDPDKPGAGGVSAFLVERNLPGLSVGKPEKKMGQQGAHICDVIFDNVR
                     VPVENRLGREGEGFKVAMQVLDRGRLHISAVCVGVAERLIKDCVAYMSERKQFGQALS
                     QFQLLQGMIADSKTESLAAKALTMETARKRDGGQSVTMEAAAAKYFASEMVGRVADRA
                     VQIFGGAGYVTDHGIERLYRDVRIFRIYEGTSQIQQVVIARETLKRGG"
     gene            complement(1247..>1546)
                     /locus_tag="VHN39_16300"
     CDS             complement(1247..>1546)
                     /locus_tag="VHN39_16300"
                     /EC_number="2.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522560.1"
                     /note="Catalyzes the synthesis of acetoacetyl coenzyme A
                     from two molecules of acetyl coenzyme A. It can also act
                     as a thiolase, catalyzing the reverse reaction and
                     generating two-carbon units from the four-carbon product
                     of fatty acid oxidation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX2817955.1"
                     /translation="AVERLFARSGMGWDDIGLVELNEAFAPQVLAVLKGWGWDERDRL
                     NVNGSGISLGHPIGATGGRILANLLRELQRRDGRYGLETMCIGGGQGIAAIFERA"
BASE COUNT          234 a          545 c          506 g          261 t
ORIGIN      
        1 cggtgacacg gacttgcccg gcgcgacctt ggcgttgagg aggtcgaaga tcgcggcctc
       61 gacgttttcg gccatctagc cgccccgctt cagggtctca cgcgcgatga ccacctgctg
      121 gatctggctg gtgccctcgt agatccggaa gatgcgcacg tcgcggtaga ggcgctcgat
      181 cccatggtcg gtgacgtagc cggcgccgcc gaagatctgc accgcccggt cggcgacgcg
      241 gccgaccatc tcggaggcga agtacttggc cgccgcggcc tccatggtga cgctctggcc
      301 tccgtcgcgc ttgcgggcgg tttccatcgt cagcgccttg gccgccaggc tctcggtctt
      361 ggagtcggcg atcatcccct gcaagagctg gaactggctc aacgcctggc cgaactgctt
      421 gcgctcggac atgtaggcca cgcagtcctt gatcagccgc tcggccacgc cgacgcagac
      481 cgccgagatg tgcaggcggc cccggtcgag cacctgcatg gcgaccttga acccctcgcc
      541 ctcgcggccc aggcggtttt ccaccggcac gcggacgttg tcgaagatca cgtcgcagat
      601 gtgggcgccc tgctggccca tcttcttctc gggcttgccc accgacaggc ccggcagatt
      661 gcgctccacc aggaaggccg agacgccgcc ggccccgggc ttgtccggat cgctccgggc
      721 catcaccgtg aacaggtcgg ccttgttggc gttggtgatg aaccgcttgg agccgttcag
      781 cacataggcg tcgccgtcga ggaacgcgcg ggtctggacg ttggcgctgt ccgacccggc
      841 ctcgggctcg gtgagcgcga aggaggtgat gatctcgccc gacgcgatgc ccggcaggta
      901 cttctccttc tgcgcatcag tgccgaacat gcacagcccc tggctgccga tgccgacgtt
      961 ggtgccgaag gccgaacgga aggccgggct ggtgcggccg agctcgacgg ccaccaggca
     1021 ctcatcctcc atggaaaggt ccaggccacc gtattcctcg gggatcgaca ggccgtagag
     1081 cccgagcgcc ttcatctcat cgaggacgtc ctgcgcgatg gcgtcgtctt cggagacttt
     1141 ggcctccagc ggacgcagcc gttcggccac gaaccggcgg acggtgtcga tcagctgctc
     1201 gcgagtctcg gcatccagcg ccatcggttc agccccctaa agtcgatcaa gcgcgttcga
     1261 agatcgcggc gatgccctgg ccgccgccga tgcacatggt ctccaggccg tagcggccat
     1321 cgcggcgctg cagttcgcgc aacaggttgg ccaggatgcg gccgccggtg gcgccgatcg
     1381 ggtggccgag cgagatgccc gagccgttga cgttcagccg atccctttcg tcccagcccc
     1441 agcccttcag caccgccagc acctgcggcg cgaaggcctc gttcagctcc accaggccga
     1501 tgtcgtccca acccatgccc gagcgggcga acagccgctc cacggc
//
LOCUS       DATAJL010000858         4105 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86662,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000858 DATAJL010000000
VERSION     DATAJL010000858.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4105
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86662"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(360..1763)
                     /locus_tag="VHN39_16305"
     CDS             complement(360..1763)
                     /locus_tag="VHN39_16305"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX2817956.1"
                     /translation="MDFEEYRRQDAVGLAELVARREVSGAELLDTASARMAQVNPRIN
                     AVTMDLTERARAEAAAPGAFSGVPFLLKDLGATLAGTPTTMGSRLFAETLAPADSAIT
                     TAYKGAGFSIFGKTNTPEFGLWPMTESEFLGVCRNPWDLSRTPGGSSGGAASAVAAGI
                     VPAAHASDGGGSIRTPASCCGLFGMKPSRGRVSFAPVGEGWAGASIQHAVTRSVRDSA
                     ALLDVVCRPQPGDPYFLSSPERPFAEEVLRDPGRLRIAFTTAAMQAPGLDPECAAAVL
                     ETARLCEDLGHHVEEAQIPGDVAAMMAAAGAVISASIAANLDAEAERRGRPIEAGEVE
                     AMTMATYRRGSAVTAAAYVRGIQALHAYTRAEAQLFETYDVLLLSTLGSPAIPIGWIL
                     EDPKLIGERLFAFMPNTQAFNNTGQPAMTVPLAQSRSGLPIGMQFVAPMGAEATLFRL
                     AGQLEQARPWFDRTAPL"
     gene            complement(1847..2476)
                     /locus_tag="VHN39_16310"
     CDS             complement(1847..2476)
                     /locus_tag="VHN39_16310"
                     /inference="COORDINATES: protein motif:HMM:NF040005.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6134 family protein"
                     /protein_id="HEX2817957.1"
                     /translation="MLSVAALPGFARAAGPIPPANNLHFNILRNGKPFGQYRVAFVSS
                     GDLLTVTTDVTMNMQIAKLSVFDYVHHCEEQWRGGRFVEMHSHTVRDKDLSRAEDVSA
                     VRGDFGIHIKTRKDQLSAPPKASPLTHWNQATLSEPLFNPQDGLMLDLRTQQIGRDGV
                     LLANATQLVGAHWTLRGSQTLDEWYDDTGVWAGLKAVFPDKSIIEYRRV"
     gene            2641..2713
                     /locus_tag="VHN39_16315"
     tRNA            2641..2713
                     /locus_tag="VHN39_16315"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2674..2676,aa:Thr,seq:tgt)
     gene            2748..3200
                     /locus_tag="VHN39_16320"
     CDS             2748..3200
                     /locus_tag="VHN39_16320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HEX2817958.1"
                     /translation="MRIYIDADACPVKDEVYKVAARYGLTTTVVSNSFIAIPPSKLIE
                     RMIVDAGPDVADDWIAERCEPGDIVVTNDIPLADRVLKAEGVAIAPNGRQFTPDSIGS
                     ALASRAVAEHIRSMGEITGGPKPFAPADRSRFLQALDEAVNREKRKRR"
     gene            3439..3933
                     /locus_tag="VHN39_16325"
     CDS             3439..3933
                     /locus_tag="VHN39_16325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c family protein"
                     /protein_id="HEX2817959.1"
                     /translation="MRHLGLTLAAAVTAAALAGCNKTPTAPAVDQAASTPPPSAMSDA
                     DKQKALAALPAPYNTADLANGESKFALCATCHTLPQGGPNMTGPNLHGVFGRKAGTLA
                     GFSYSDPMKASGWTWDAARIDTWITDPKIALPGTKMTFVGLKDPKDRTDVIAYLMIGT
                     GFKP"
BASE COUNT          687 a         1387 c         1363 g          668 t
ORIGIN      
        1 tccatgggcg tgtcggcgcc cgcgccgccg ccggagccct ggccgttgct ggccacctgc
       61 gtcggggggg cctcgtcgtc atgatggtgc tgaccaccgc ccgtggaata ggccatggcg
      121 cccgccgcga tgaacgtcga gcacagcgct gccgccaagc gctttgcgtg tctcaatctg
      181 gaacggggta gaaccatggt gtgcacgttg caagcatcgt gcagtgaagc gaaaaaatca
      241 attatgaggc gtttattacc tcgggcgttg ccttgctatt gctcgaacta tgctccgtta
      301 accttggttc ccgcgagcgt aactctcctc ccaggggtgc tatcctctgg aaattcccct
      361 cacaggggag ctgttctgtc aaaccagggt ctggcctgct ccagctgccc ggccagacgg
      421 aacagggtcg cctccgcccc catgggcgcc acgaactgca tcccgatggg caggcccgac
      481 cggctctgag ccaaaggcac ggtcatcgcc ggttgtcctg tattattaaa ggcttgagta
      541 ttgggcatga aggcaaacag ccgctcgccg atcagcttgg gatcctccag aatccagccg
      601 atggggatgg ccggactgcc gagcgtggac agcagcagaa catcataggt ctcgaatagc
      661 tgggcctcgg cgcgggtgta ggcgtgcagg gcctggatgc cgcgcacata ggccgcggcc
      721 gtcacggccg acccgcgacg ataggtcgcc atggtcatgg cctcgacctc gccggcctcg
      781 atggggcgcc ctctccgctc ggcctcggcg tcgagattgg ccgcgatgct ggcggagatc
      841 actgcgccgg ccgcggccat catggcggcc acatccccgg ggatctgcgc ctcttcgacg
      901 tgatggccca ggtcctcgca gagcctggcg gtctccagca cggccgccgc gcactccgga
      961 tcgaggcccg gggcctgcat ggccgcggtg gtgaaggcga tcctgaggcg gccggggtca
     1021 cgcaggacct cctcggcgaa cgggcgctcg gggctgctaa ggaaataggg gtcgccgggc
     1081 tggggccggc agacgacgtc gagcagggcg gcgctatcgc gcaccgagcg ggtcaccgcg
     1141 tgctgaatcg aggccccggc ccagccttcg cccaccggtg cgaaggacac ccggccccgc
     1201 gacggcttca tgccgaagag cccgcagcag gaggccggcg tgcggatcga gccgccgccg
     1261 tcgctggcat gggccgcggg tacgatcccc gccgccacgg ccgacgctgc gccgccggag
     1321 gagccgccgg gcgtgcgcga caggtcccag ggattgcggc acaccccgag gaactcggac
     1381 tcggtcatcg gccacaggcc gaactcagga gtgttggttt tgccgaagat ggagaagccg
     1441 gcgcccttgt aggcggtggt gatggcgctg tcggcgggcg ccaaggtctc ggcgaacagc
     1501 cgcgagccca tggtggtggg tgtgcccgcc agcgtcgcgc caaggtcctt cagcaggaac
     1561 gggacgccgc tgaacgcgcc cggcgccgcg gcttcggccc gcgcgcgttc ggtcaggtcc
     1621 atggtgacag cgttgatcct gggattgacc tgcgccatcc gcgcagaggc cgtgtcgagc
     1681 agttcggccc cgctcacttc tctgcgggcg accagttcgg ccaggccgac cgcgtcctgg
     1741 cggcgatatt cctcgaaatc catgcggctc accctgcaat gctatccgca caggcaaagc
     1801 acaggcgcgc cgccgaacca acccaccgcc cttgcggcgg ctggcttcag acgcggcggt
     1861 attcgatgat cgacttgtcg gggaagacgg ccttgagccc ggcccagacg cccgtgtcgt
     1921 cgtaccattc gtccagcgtc tgcgagccgc gcaacgtcca gtgggccccg accagctggg
     1981 ttgcgttggc caggagcacg ccgtcgcggc cgatctgctg ggtccggagg tccagcatca
     2041 gcccgtcctg cgggttgaac agcggctcgg acagggtggc ctggttccag tgggtgagcg
     2101 ggctcgcctt gggcggcgcg ctaagctggt ccttgcgggt cttgatatgg atgccgaagt
     2161 cgccgcgcac cgccgatacg tcctcggccc ggctgaggtc cttgtcgcgg acagtatggc
     2221 tgtgcatctc cacgaaccgg ccgccgcgcc attgctcctc gcagtgatgc acatagtcga
     2281 acaccgacag cttcgcgatc tgcatgttca tggtgacgtc ggtggtcacc gtgagcaggt
     2341 cgccactgct gacgaaggcc acccggtact gtccgaacgg cttgccgttg cgcaggatgt
     2401 tgaaatgcag gttgttcgcg ggcgggatgg ggccggcggc gcgcgcgaac cccggcagcg
     2461 ccgcgactga caacacgccg ccaatcacgg cgcgacgatc aaaagacgcc attgaactgc
     2521 tccccctgtc ggacttgaag cttgagcgta ggagagcccg gcccctcagt ccatccgcca
     2581 acctcacacc gttatccggc tgacatctta agcgttcgtg gctaaaggcc tgcccacggc
     2641 gccggattag ctcagctggt agagcagcgg ttttgtaaac cgaaggtcgc gggttcgagt
     2701 cctgcatccg gcaccgcccg cccgacgagc cggtcaccaa gagcagaatg cgcatctaca
     2761 tcgacgccga cgcctgtccg gtgaaggacg aggtctacaa ggtggccgcc cgctatgggc
     2821 tcacgaccac ggtggtttcc aacagcttca tcgccatccc gccgtcgaag ctgatcgagc
     2881 ggatgatcgt cgacgccggg cccgatgtgg ccgacgactg gatcgccgag cgctgcgagc
     2941 ccggcgacat cgtggtcacc aatgacattc cgctggccga ccgggtgctg aaggccgagg
     3001 gcgtggcgat tgcgccgaac gggcggcagt tcacgcccga tagcatcggc tcggcgctgg
     3061 cgtcgcgggc ggtggccgag cacatccggt cgatgggcga gatcaccggc ggtccaaagc
     3121 ccttcgcccc cgccgaccgc tcgcggtttc tgcaggcgct ggacgaagcg gtgaaccgcg
     3181 agaagcgcaa acgccgctag tgtgctggat ttgaaattcg cctcactcaa ggtcaaacgc
     3241 cgagcgaatt tcaaatccaa gaagcacact agggagacat ggacttcctg gtgtcctcat
     3301 cgattccgaa gttcgtccgg cgctggccgc agacgcttgc gaacttcgga accgggacac
     3361 cagccgcctt gccttggccc gccctgcgca ggtatggcgt gcgttcgccg gctgtttcgc
     3421 ttcgaggaga tcttccgtat gcgccacttg ggcttgaccc tcgccgccgc cgtgaccgcc
     3481 gccgcgctcg ccggctgcaa caagaccccg actgcgcctg cggtcgacca ggccgccagc
     3541 accccgccgc cctcggcgat gagcgacgca gacaagcaga aggcgctggc cgcgctgccg
     3601 gccccctaca acaccgccga cctcgccaac ggggaatcga agttcgcgct ctgcgccacc
     3661 tgccacaccc tgccgcaagg tggaccgaac atgaccgggc cgaacctgca tggcgtgttc
     3721 gggcgcaagg ccggcacgct ggccggcttt agttattccg atcccatgaa ggccagcggc
     3781 tggacctggg acgcggcccg catcgacaca tggatcaccg atccgaagat cgccctgcct
     3841 ggcaccaaga tgaccttcgt gggcctcaag gaccccaagg accgcacgga cgtcatcgcc
     3901 tatctgatga tcgggaccgg cttcaagcct taggtccagt cgacgccggg tagagtaagc
     3961 cgatcaagct caaccttgac gggtaggagc gccgagggca tcctgtggcc gtcgccccgt
     4021 gaaggttcgc cctgagcgaa tggcgacgcc ccgtcggcgc gtccccaatg cgccggttct
     4081 gcgctgaaag ggcacgacgt ccccc
//
LOCUS       DATAJL010000859         2159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86779,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000859 DATAJL010000000
VERSION     DATAJL010000859.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86779"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..692
                     /locus_tag="VHN39_16330"
     CDS             183..692
                     /locus_tag="VHN39_16330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HEX2817960.1"
                     /translation="MKVAAISGAVIAALATGAVATPSFAQPYRDAYANDCRQDSRGNT
                     TAGAVIGGIAGAVLGSNLAAHHGGRSGGAAIGGVAGALLGSSIARSSSSSCDYQGYNS
                     GYRTPAYADGGYYAQPSYAYAQPAYSYRGGGYDARYSDNGYGRGGYDRGHDRDRGRDR
                     DGDWHSNFR"
     gene            800..1618
                     /locus_tag="VHN39_16335"
     CDS             800..1618
                     /locus_tag="VHN39_16335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEX2817961.1"
                     /translation="MDRLFFDLRATHNPHRWFMPLTPGVCVGRPDEMFMFGGVGLASA
                     IGAMERTTGRPLIWATAQYLSYARPPSVVDLDVWTPAIGKYNTQARVIGHVGDKEIFT
                     VNAALGARPSEISEQWLTMPDAPPPEDCEPGEHWRGDDDGLHGRIEVRVVKGRYGGDR
                     AGNPEADGRSLLWIRPRERFTIDASMLAIMADHVPSGIGNALGQNAGGNSLDNTLRIR
                     RIVPTEWVLCDIRILGVHGGFGHGAMYLFAQDGELMATASQSLIVRVRETRQDR"
     gene            complement(1625..>2159)
                     /locus_tag="VHN39_16340"
     CDS             complement(1625..>2159)
                     /locus_tag="VHN39_16340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518119.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817962.1"
                     /translation="PYLWFRRRYSNRDLNLRSEDRRNDLTVLLAVLAVESAVELATFP
                     GVFAMRPAQLLLAAPISFAVFFVGTVLPTMVLIYAILLPRYLKLTGSTTATVILGGLT
                     YALMHLVEGWSRFDTARDSALSLIFVVLTYVGPGMFKSFVTLRTGNAWVHAIGYHAIA
                     PHVIADAPMIAKVFAIR"
BASE COUNT          353 a          740 c          752 g          314 t
ORIGIN      
        1 tggcgctcat ggccgccata taggcgctcg gtgggcccgg acgaacccct cctcgatggc
       61 gccgcgcggg ggtgaacccc agataacggc gccctcagag cgggttcagc ggccgcggcg
      121 ctcaatggcg tccacaagcg ggccgagcct tcggtccgca actagccaga ctggagacag
      181 atatgaaggt cgccgcaatt tctggcgccg tgatcgccgc cctggcgacc ggcgccgtcg
      241 ccaccccgag cttcgcgcag ccctaccgcg acgcttatgc caatgattgc cgtcaggaca
      301 gccgcggcaa caccacggcc ggcgcggtca tcggcggcat cgccggcgcg gtgctgggct
      361 cgaacctcgc cgcccaccac ggcggccgct ccggcggagc cgcgatcggt ggcgtcgccg
      421 gcgccctcct gggcagcagc atcgcccgca gctccagctc gtcctgcgac tatcagggct
      481 acaactcggg ctaccggacg ccggcctacg ccgacggcgg ctactacgcg cagccgagct
      541 acgcctatgc ccagccggcc tacagctacc gtggcggcgg gtacgacgcc cgctacagcg
      601 acaacggcta cggtcggggc ggctatgatc gcggccatga ccgggatcgc ggccgtgacc
      661 gggacggtga ctggcattcg aacttccgct agccgacctc ctacggcatg accggcggcc
      721 gcatcctcct cggagggtgc ggccgctgcc gcgtccgggc gccttgcgaa ttgggggctg
      781 gtaggctcat gaaggcggca tggatcgcct cttcttcgac ctgcgcgcca cgcacaatcc
      841 gcatcgctgg ttcatgccgc tcacgccggg cgtctgcgtc gggcggccgg acgagatgtt
      901 catgttcggt ggcgttggcc tggcttcggc catcggggcg atggagcgca ccaccggtcg
      961 gccgctgatc tgggccacgg cgcagtacct gtcctacgcc cggccgccga gcgtggtgga
     1021 cctcgatgtc tggaccccgg ccatcggcaa gtacaacacc caggcccgcg tcattggcca
     1081 cgtgggcgac aaggagatct tcaccgtcaa cgccgccctg ggcgcgcggc ccagcgagat
     1141 ctccgagcaa tggctgacca tgccggatgc gccgccgccc gaggactgcg agcccggcga
     1201 gcactggcgc ggtgacgacg acggcctgca cggccgcatc gaggtccgcg tcgtcaaggg
     1261 gcgctatggc ggcgaccggg cgggcaatcc ggaggcggac ggccggtcgc tactgtggat
     1321 ccggccgcgc gagcggttca ccatcgacgc ctcgatgctg gcgatcatgg ccgaccatgt
     1381 cccctccggg atcggcaatg cgctgggcca gaacgccggc ggcaacagcc tggacaacac
     1441 gcttcgcatc cgccggatcg tgccgaccga gtgggtgctc tgcgacatcc gcatcctggg
     1501 cgtccacggc ggcttcggcc acggcgccat gtacctgttc gcccaggacg gcgagctgat
     1561 ggccaccgcc agccagtcgc tgatcgtgcg ggttcgggag acacggcagg accgctgagc
     1621 ccgctcagcg gatcgcgaac accttggcga tcatcggggc gtcggcgatc acgtgcgggg
     1681 cgatggcgtg atagccgata gcgtggaccc aggcgttgcc ggtcctgagc gtcacgaagc
     1741 tcttgaacat gcccggtccg acataggtca ggacgacgaa aatcagggag agggcgctgt
     1801 cgcgcgccgt gtcgaacctt gaccagccct cgaccaggtg catcagggcg tatgtcagtc
     1861 ctcccagtat caccgtggcg gtcgtcgagc cggtgagctt caggtagcgc ggcagcagta
     1921 tggcgtagat gagcaccatg gtcgggagca cggtgccgac aaagaacacg gcaaacgaga
     1981 tgggcgcggc cagcaggagc tgcgcgggcc gcatcgcgaa gacgcctgga aaggtcgcga
     2041 gttcgacggc gctctcgacg gcgagcacgg caagcagcac cgtcaggtca ttgcgccggt
     2101 cttccgagcg caggttgagg tccctgttcg aatagcgccg gcggaaccaa agataaggg
//
LOCUS       DATAJL010000860         2445 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99693,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000860 DATAJL010000000
VERSION     DATAJL010000860.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2445)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2445)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2445
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99693"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..582
                     /locus_tag="VHN39_16345"
     CDS             <1..582
                     /locus_tag="VHN39_16345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEX2817963.1"
                     /translation="ELARAGEAAPAASGGQLAAMLSGLSEPQAAAMLEEVWALAGVEP
                     VGGRGPGEIAARLVRRAEAAQAPALTEIQADAIRAFMAISEAPTAGLKKVRTLTGNAR
                     ALDATFADWDARLAKLSEIPADRMRFSPALGHAFDYYDGLTFEVRSDALGADRPVASG
                     GRYDGLLSRLGGADARAVGCVVRPWRAFSRGES"
     gene            579..1541
                     /gene="hisG"
                     /locus_tag="VHN39_16350"
     CDS             579..1541
                     /gene="hisG"
                     /locus_tag="VHN39_16350"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007669277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEX2817964.1"
                     /translation="MSEPQKTPLVIAIPSKGRLKEQVEEWLADCGLTLSVSGGARGYI
                     ANLKGLPGAQVRLLSAADIADALGAGEAHLGVTGEDLLRERGDLESRALLLRPLGFGR
                     ADLIVAVPKSWLDVDTMADLEEVAHDYLARTGRRMRVATKYLAQTRGFFARHGVVDYR
                     ITESGGATEGAPASGAAELIVDITTTGATLAANGLKILADGLILKSQAQLTASLKAAW
                     GPDQLATAERLLRAVEGRAAALTHSTLVWPATGSAAETKAVERLTAAGASARPHGLMI
                     ETARATEAAQALTAAGLGPVTVSQPDFVFDVDCAAFAALRQRVL"
     gene            complement(1831..>2445)
                     /locus_tag="VHN39_16355"
     CDS             complement(1831..>2445)
                     /locus_tag="VHN39_16355"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M13-type metalloendopeptidase"
                     /protein_id="HEX2817965.1"
                     /translation="AYYNPSNNEIVFPAAILAPPFFDPDGDMAINYGGIGGTIGHELT
                     HGFDDQGRRYDGTGKLTDWWTAEDAAKFEVQAKKLGAQYGAFEVLPGAKINGELTMGE
                     NIADLGGLLLALRAGRRDRRRAPAPIIDGLTGDQRVFLGWAQVWRGKTRDDALRQQLV
                     SDPHSPEKARVDVPMRNIDAFYTAFGLKAGDGMYIAPADRVRIW"
BASE COUNT          367 a          875 c          829 g          374 t
ORIGIN      
        1 gaactggccc gggctggcga ggccgcgccg gccgcgtccg gcggccagct cgccgccatg
       61 ctctcgggcc tctcggagcc ccaggccgcg gccatgctgg aagaggtctg ggcgctggcc
      121 ggcgtcgagc cggtgggcgg ccgtggcccc ggcgagatcg ccgctcgcct tgtgcgccgc
      181 gccgaagccg cgcaggcccc ggcccttacc gagattcagg ccgacgccat ccgcgccttc
      241 atggcgatct ccgaggctcc gaccgccggc ctcaagaaag tccgtacact gacgggcaac
      301 gccagggccc ttgatgcgac cttcgccgac tgggacgccc ggctcgccaa gctgtccgaa
      361 attcccgccg atcgcatgcg gttctcgccc gcgctgggcc acgccttcga ctactacgac
      421 ggcctcacct tcgaggtccg cagcgacgcc ctgggcgccg accggccggt agcttccggg
      481 ggccgctacg acggcttgct gtcgcggctc ggcggggccg acgcccgcgc cgtcggctgc
      541 gtcgtgcggc cctggcgcgc cttttcgaga ggcgagtcgt gagcgaaccc caaaaaacgc
      601 cactcgtcat cgccatcccc tccaaggggc ggctgaaaga acaggtcgag gaatggctcg
      661 ccgactgcgg cctgaccctc tcggtcagcg gcggggcgcg gggctatatc gccaacctca
      721 agggtctgcc gggcgcgcag gtgcgcctgc tctcggccgc cgacatcgcc gacgccctgg
      781 gcgcgggcga ggcccacctc ggcgtcaccg gcgaggatct gctccgggaa cggggcgatc
      841 tggagagccg ggcgctgctg ctgcggcctc tgggcttcgg tcgcgcggac ctgatcgtag
      901 ccgtgcccaa gagctggctc gacgtcgaca ccatggccga cctggaggag gtggcccacg
      961 actacctggc tcgcacgggc cggcgcatgc gggtggccac aaaatacctg gcccagaccc
     1021 gcggcttctt cgcccgacac ggggtggtgg actatcgaat caccgagtcc ggcggggcga
     1081 ccgaaggcgc gccggcctcc ggcgcggccg agttgatcgt cgacatcacc accaccgggg
     1141 cgacgctggc cgccaatggc ctgaagattc tggccgacgg cctgatcctg aagagccagg
     1201 cgcagctcac cgccagtctg aaggccgcct ggggtccgga ccagctggcc acggccgagc
     1261 gccttctgcg cgccgtcgag ggccgggcgg cggctctgac ccacagcacc ctggtctggc
     1321 ccgccaccgg cagcgccgcg gagactaaag ccgtcgagcg cctcacggcc gccggcgcct
     1381 cagcgcgccc gcacgggctg atgatcgaga cggcgcgggc gacggaagcc gcccaggccc
     1441 tgaccgcggc aggcctgggg cccgtcaccg tctcccagcc ggacttcgtt ttcgacgtgg
     1501 actgcgcagc ttttgcggcc ctgagacaac gggttctttg acgagcctgt caaaacgaga
     1561 cctattttcc cgtcgctcgc gaaaaactga tcgcatcgtg ccggctcgcc acccacgggg
     1621 cgttgactcg ggtcaaaaat tgccctctct tcccgtcgcg agagacacga aggcgcaaga
     1681 ccttggatct ccggcgtttc ggggaggaaa cgcccgctct gcttagagcg actgctcaaa
     1741 ataaggcccg ttgcgattat cccccgcaac gggccaaatt tttgcccgga gcccagcttt
     1801 gacgccgacg tcaaaactgg aaggcgcgcc tcaccagatc cgaacgcgat cggccggtgc
     1861 gatgtacatg ccgtcgccgg ccttcagtcc gaacgcggtg tagaaggcgt cgatattgcg
     1921 catgggcacg tcgacccgcg ccttttccgg cgagtgcggg tctgagacca gctgctggcg
     1981 cagcgcatcg tcgcgggtct tgccgcgcca gacctgcgcc cagcccagga acacccgctg
     2041 gtcgccggtc aggccgtcga tgatcggcgc tggcgctcga cgcctatcac gcctccctgc
     2101 acggagcgcc agcaggaggc cgccgaggtc ggcgatgttc tcgcccatgg tcagctcgcc
     2161 gttgatcttg gcgcccggca gcacctcgaa ggccccgtac tgggcgccca gcttcttggc
     2221 ctggacctcg aacttggcgg cgtcctcggc cgtccaccag tcggtgagct tgccggtccc
     2281 atcatagcgc cggccctggt cgtcaaagcc atgggtcagc tcgtggccga tggtgccgcc
     2341 gatgccgcca tagttgatgg ccatgtcgcc gtccggatcg aagaacggcg gagccaggat
     2401 cgcggccggg aagacgatct cgttgttgga ggggttgtag taggc
//
LOCUS       DATAJL010000861         2468 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99753,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000861 DATAJL010000000
VERSION     DATAJL010000861.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99753"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..1086)
                     /locus_tag="VHN39_16360"
     CDS             complement(13..1086)
                     /locus_tag="VHN39_16360"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEX2817966.1"
                     /translation="MTPLPPGSTIGILGGGQLGRMLALAAARLGFDVVVLEREADSPA
                     GRAAARLIVADYGDEAALAELAASTTVVTYEFENVPAASVAWLADHGVEVAPGSRALS
                     VAQDRVEEKTFLNANGAPTVAFAAASTPGEAVAAVAAIGAPALMKTRREGYDGKGQRW
                     VEHAPDAAAAFEALGGVPVIVEAAADFVRELSIIAARGRDGSTAIYPLAENHHEHGVL
                     RRSIAPAHAGPALNDQAERLAARILAGLDYVGVIGIELFEMADGRLLVNEIAPRVHNT
                     GHWTEDGCEVDQFEQHIRAVAGWPLGPTRATAQVEMLNLLGDEADAWAKYAAEPETRL
                     HLYGKRGARPGRKMGHLNRVRPL"
     gene            complement(1083..1577)
                     /gene="purE"
                     /locus_tag="VHN39_16365"
     CDS             complement(1083..1577)
                     /gene="purE"
                     /locus_tag="VHN39_16365"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEX2817967.1"
                     /translation="MSGKSAPVAIIMGSRSDWPILRHAAEMLESLGVAYEAKVVSAHR
                     TPERMYAFAKGAKQAGFKVIIAAAGGAAHLPGMTASLTELPVLGVPIETKALKGMDSL
                     LSIVQMPAGIPVGTLAIGEAGAKNAGLMAAKILALSDEGVAKRLAAFTATQTASIPET
                     VEDA"
     gene            1708..2421
                     /locus_tag="VHN39_16370"
     CDS             1708..2421
                     /locus_tag="VHN39_16370"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEX2817968.1"
                     /translation="MKITGARNEPFSAMRRRALQQAGAQVRSSTPIDSVEILGISEAE
                     MTPAVSAAVQSLLGEIDDLRTEVGRLKGRLAEVEDLADRDALTPLLNRRALLRELGRI
                     RTFAQRYGSPASLVYFDLDDLKGVNDRLGHAAGDAALRAVAERLLAHVRESDIVGRMG
                     GDEFAVILAQADHATAEAKAASLARAIEAEPVKFGDWSAPLHISWGVREITQDAEPEA
                     LVADADAAMYARKRERKSA"
BASE COUNT          364 a          855 c          888 g          361 t
ORIGIN      
        1 ccgtaagaca actcacagcg gcctgacccg gttgaggtgg cccatcttgc ggccgggccg
       61 ggcgccgcgc ttgccgtaga ggtgcaggcg ggtctccggc tcggcggcgt atttcgccca
      121 ggcgtcggcc tcgtcgccca agaggttcag catctcgacc tgggcggtgg cgcgggtcgg
      181 gcccagcggc cagccggcga cggcgcggat gtgctgttcg aactggtcga cctcgcaacc
      241 gtcctcagtc caatggccgg tgttgtgcac ccggggcgcg atctcgttca ccagcagccg
      301 gccgtcggcc atttcaaaga gctcgatgcc gatcacgccc acatagtcga ggcccgccag
      361 gatgcgcgcg gcgagacgct cggcctggtc gttcagcgcc gggccggcgt gggcgggggc
      421 gatggagcgg cgcaggacgc cgtgctcgtg gtggttctca gccaggggat agatcgccgt
      481 cgagccatcg cggccacgcg cggcgatgat cgagagctcg cgcacgaaat cggcggcggc
      541 ctcgacgatc accggcacgc cgcccagggc ctcgaaggcc gcggcggcgt ctggcgcatg
      601 ctcgacccag cgctgaccct tgccgtcgta accctcgcgg cgggtcttca tcagggctgg
      661 ggcgccgatc gcggccacgg cggcgacagc ttcgccgggc gtgctggcgg cggcgaaggc
      721 caccgtgggc gcgccgttgg cgttcaggaa ggtcttctcc tcgacccgat cctgggcgac
      781 ggagagcgcg cgggagcccg gagccacctc gacgccgtgg tccgcgagcc aggcgacgga
      841 cgctgcgggc acgttctcga attcgtaggt gaccacggtc gtactggcgg cgagttcggc
      901 cagcgccgcc tcgtcgccat agtcggcgac gatcagccgg gcggcggcgc ggccggcggg
      961 gctgtcggct tcgcgctcaa gcaccaccac atcgaagccc aggcgcgcgg cggcgagcgc
     1021 cagcatccgg cccagctggc cgccgccgag gatgccgatg gtggaaccgg gcggaagggg
     1081 tgtcacgcgt cctcgacggt ctcgggaatg ctggcggtct gggtggcggt gaaggcggcc
     1141 aggcgttttg cgaccccctc gtccgagagc gccaggatct tggccgccat caggccggcg
     1201 ttcttggcgc ccgcctcgcc gatcgccagc gtccccaccg ggatgccggc cggcatctgg
     1261 acgatggaga gcaggctatc catgcccttc agcgccttgg tctcgatggg cacgcccagc
     1321 accggcagtt cggtgagcga ggcggtcatt cccggcaggt gggccgcgcc accggcggcg
     1381 gcgatgatca ccttgaagcc ggcctgcttt gccccttttg caaacgcgta catgcgctcg
     1441 ggcgtgcgat gggcggagac caccttggcc tcataggcca cgcccaggct ctccagcatc
     1501 tcggccgcat ggcgcaggat gggccagtcc gagcggctgc ccataatgat ggcgacgggc
     1561 gctgacttgc cgctcatgtc gtgacggccc cccttctcga aggcggcgga gtataggcgc
     1621 cgactttgca ggggcaaccg gggacgcgta gattaaccat tgcgctacag tgaagctgat
     1681 tctgaaccgc cccttggaag ccacgccatg aagataaccg gcgcccgcaa cgagcctttt
     1741 tcggccatgc ggcggcgcgc cctgcagcag gccggcgccc aggtgcggag ctcaaccccc
     1801 atcgactccg tggaaatcct cggcatcagc gaggcggaga tgacgccggc ggtgagcgcc
     1861 gccgtgcaga gcctgctggg cgagatcgac gacctgcgca ccgaggttgg ccggctgaag
     1921 ggccgcctcg ccgaggtgga agacctggcc gaccgtgacg cgcttacccc actgctcaac
     1981 cgtcgcgcac tccttcgcga gctgggccgt atccgcacgt tcgcgcagcg ctatggctcg
     2041 ccggccagcc tggtctattt cgacctggac gacctgaagg gcgtcaacga ccggctgggc
     2101 cacgccgccg gcgatgcggc gctgcgggcg gtggccgagc ggctgctggc ccatgtccgc
     2161 gagagcgaca tcgtaggccg catgggcggc gacgaattcg cggtgatcct ggcccaggcc
     2221 gaccatgcca ccgccgaggc caaggccgcc tccctcgccc gcgccatcga ggccgagccg
     2281 gtgaaattcg gcgactggtc cgccccgctg cacatctcct ggggcgtgcg cgagatcacc
     2341 caggacgccg agcccgaggc cctggtcgcc gacgccgacg cggccatgta cgcgcggaaa
     2401 cgggaacgga agagcgcgta gccgactacg cgataatatc cgggttcagc tggtcctcga
     2461 tgccggcg
//
LOCUS       DATAJL010000862         7046 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_86958,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000862 DATAJL010000000
VERSION     DATAJL010000862.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7046)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7046)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7046
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_86958"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..1814
                     /locus_tag="VHN39_16375"
     CDS             252..1814
                     /locus_tag="VHN39_16375"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF020846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S53 family peptidase"
                     /protein_id="HEX2817969.1"
                     /translation="MAKRPVPGSERSPLPGAVAVGRTASDQRLEVTVLLRRRDAQGMK
                     ARAARTPLGGHMDDAAFTAAYGADPADMEKVASFAEEHDLAIVQSDAGRRTVILSGAV
                     EQFEAAFDVELQDFEYDNGSYRGRVGAVQVPEELAGVVEAVMGLDNRPVAKPHFRLRP
                     NFGARASGAGLKSFTPPQLAKLYGFPAGTGQGQCVALIELGGGYRPADLKAYFSGLGV
                     GQPKVTAIGVDHAANKPTGDPNGPDGEVVLDIEVAGGVAPNSHIVVYFAPNTDAGFLN
                     AITTAAHDTKNKPSVISISWGGPESSWTAQSLAAFDSAFQAAAVMGVTVFVASGDNGS
                     SDGLNDGQAHVDFPASSPHATACGGTRLTASGQSIAAEQVWNDGTDGGAGGGGVSVAF
                     EAPSWQNGLKVKPKGGLASPLAKRGVPDVAADADPESGYEIRVDGQTAVIGGTSAVAP
                     LWAGLVAIVNAASGKRAGLINPLLYAAPAALRDVTMGDNGMYEADEGWDACTGLGSPN
                     GAAVAAALAPPP"
     gene            complement(1811..2791)
                     /locus_tag="VHN39_16380"
     CDS             complement(1811..2791)
                     /locus_tag="VHN39_16380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD regulator"
                     /protein_id="HEX2817970.1"
                     /translation="MSGSLDSAVVIGLSAVVVAIQEDDAVVLTVRPPGASAEGLPFGP
                     FDPKGHRTFELAMRAFVTEQTRFTLGYVEQLYTFGDKGRDAPLADMGDRGGDSPDHAR
                     VISVGYLALATAAVDTHAPGSEWRPWTRFFPYEDWREGRPAALALIEEALRRWAAGDA
                     QRLSRTRLLFALEGAAWNEERVLERYELLYEAGLAREAARDRGEAATALPAPLAAALG
                     EPMLSDHRRILATAVSRLRGKLKYRPVVFELMPEAFTLSALQRAVEAIAGVPLHKQNF
                     RRALERADLVEGLGRMDADTGGRPAELYRFRREILGARPVSGLSLPLLRD"
     gene            complement(2788..3381)
                     /locus_tag="VHN39_16385"
     CDS             complement(2788..3381)
                     /locus_tag="VHN39_16385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019847802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEX2817971.1"
                     /translation="MLSGRRLDLLDPSPMDIEIEDIAHGLARVARWNGQTIGEHAFSV
                     AQHSVVVEEIVAHIQPDIAPRWRLAALLHDASEYVIGDMISPFKAALGVNYKDFEERL
                     ENAIHTRFGLPAKTPAAIKALIKRADRACAFFEATQLAGFTHAESLAFFDAPPAGYSL
                     KIDPQPPANAQQRYIERFHVLSEAAGYTSVAAAFDTE"
     gene            3583..4395
                     /locus_tag="VHN39_16390"
     CDS             3583..4395
                     /locus_tag="VHN39_16390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007670989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX2817972.1"
                     /translation="MSWARIMAPLSGGQGDAAAVAAAVMLAEPFQAEMVGVYTPADVA
                     DVMPWMGEGFLGGVQTTALESLKEAAQVGEKNARAAMEKTVYAKSRFIALQTPVWAGL
                     SAESRLCDVVVFASDPARGRGPLAEAFQQMVADEQRPVLIARDGLKVGGVVAVAWDGG
                     KEASRAARLALPLLEKAAKVVILAAPKASSRSFDAGRLQSYYAARGVEAEVDILPDTG
                     DAAPVLLYAARKSGADILVAGAFGHPRLQEFIFGGTTRTLLNSDAPSLFLSH"
     gene            4416..4790
                     /locus_tag="VHN39_16395"
     CDS             4416..4790
                     /locus_tag="VHN39_16395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817973.1"
                     /translation="MTLSRIVMRLARNPGTEFAGGDDHRGYALTAPLTDDGHLDEAAY
                     SKARDACTVRRFSPDEDPADGRLARRGSRWFFDYEEGDIVDDEPLHRLGEHRFAVGEY
                     VTVTDEDGRPLTYKVVEVQPAG"
     gene            complement(4787..5101)
                     /locus_tag="VHN39_16400"
     CDS             complement(4787..5101)
                     /locus_tag="VHN39_16400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817974.1"
                     /translation="MISAVLAATALFFQAAPVADHAAAASSAAPARSVSPVTVTGQGS
                     HTSTEAGGTVVCHDEVRLGSLFPQRICARKDEILDRTRMDQQSTREATNLRPWRDPAS
                     GH"
     gene            complement(5190..6008)
                     /locus_tag="VHN39_16405"
     CDS             complement(5190..6008)
                     /locus_tag="VHN39_16405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817975.1"
                     /translation="MKSLLFLSACGLVLTGISACAPMAPPTARVALDCPTDVGGLKLS
                     TMTPDRKTCLYSTRDGDEVSLRLLAVSAGAYETALQPVEAELQTEVQPEPAADAKADG
                     KPGVAIAKAASSSATDASAVAKQAAEDAKSSVKKADKDDDGDSKDDSDASDRHSDHAH
                     IDLPGIHINADDDKADVNVGMVHVNAGENGATVRMSRDVRLRGEAFSPEKRGFRATFI
                     LARDDLKDGWKAVGYEAAGPKAGPITVAVFKAHEGTRHDVSDDIKRLVRRNGGV"
     gene            complement(6110..6979)
                     /locus_tag="VHN39_16410"
     CDS             complement(6110..6979)
                     /locus_tag="VHN39_16410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX2817976.1"
                     /translation="MTGRFQGTADYVATDDLKVAVNAAIALERPLLVKGEPGTGKTVL
                     AYEIARALKAPLITWHIKSTTKAHQGLYEYDAVTRLRDSQLGEIGVKDVKNYIKKGKL
                     WEAFESPVRPVLLIDEIDKADIEFPNDLLQELDRMEFYVYETNETIKAAIRPIVLITS
                     NNEKELPDAFLRRCFFHYIRFPEAETMNEIVEVHYPGIKQKLVAEALRIFYDMRKVPG
                     LKKKPSTSELLDWLKLLMVEDIDADALKEKDPTKLIPPLHGALLKNEQDVHLFERLAF
                     LARREGAGSRPGQ"
BASE COUNT         1114 a         2278 c         2458 g         1196 t
ORIGIN      
        1 agaggccgcc taggccttca agcggagcgc gtctcggcga tcttccaaac ggccgccgcg
       61 gtctgctcgt cggccgggaa gaaggtctcc agcgtcagct ccgaaaggac cgtgtcaacg
      121 ggcgtccgtc cagccgcgca cgaaactgtg ttgaagcgcc atctgaagta gagtccactt
      181 acccgccata gtagagctac tgttggcgag cggtcggcgg atcggccgcg ccaaacatag
      241 gggtgtgcgt tatggccaag cgtcccgttc ccggttcaga gcgctcgccg ctccccggcg
      301 ctgtagcggt cggcaggact gcgtccgatc agcgtcttga ggtgacggtt ctcctccgcc
      361 gccgcgacgc gcagggcatg aaggcccgcg cggcaagaac accgcttggt ggtcatatgg
      421 acgatgcggc gttcaccgcg gcctatggcg cggaccccgc cgacatggag aaagtcgcgt
      481 ccttcgccga ggagcacgac ctcgcgatcg tccagtcaga cgctgggcgg cgcaccgtga
      541 tcctctccgg cgcggtcgaa cagttcgagg cggccttcga cgtcgaattg caggatttcg
      601 aatacgacaa cggctcctat cgcggccggg tcggcgcggt gcaggtcccc gaggaactgg
      661 ccggcgtggt cgaggcggtc atgggtctgg acaaccgccc ggtcgccaag ccgcattttc
      721 ggctccgccc taatttcggc gcgcgggcgt cgggcgcagg cctgaaatcc ttcacgccgc
      781 cccagctggc caagctctat ggttttcccg cggggaccgg ccaaggccag tgcgtcgccc
      841 tcatagagct gggcggcggc taccggcctg ccgacctgaa ggcctatttc tcaggtctcg
      901 gcgtcggcca gcccaaggtc accgccatcg gcgtcgatca cgcggcgaat aagcccacgg
      961 gcgaccccaa cgggccggat ggcgaggtgg tgctggatat cgaggtggcc ggtggggtgg
     1021 ctcccaattc gcacatcgtc gtctacttcg ccccgaacac ggacgcgggt ttcctgaacg
     1081 ccatcaccac cgcggcgcac gacaccaaga acaagccgtc ggtcatctcg atcagctggg
     1141 gtgggccaga gtccagctgg accgcgcaat cgctcgcagc ctttgacagc gcctttcagg
     1201 cggcagccgt catgggggtg acagtgttcg tggcctccgg cgacaacggg tcttccgatg
     1261 gcctgaacga tgggcaggcc catgtcgact tcccggcgtc cagccctcac gccaccgcat
     1321 gcggtggcac acgtctgacg gcttctggcc agagcatcgc cgctgagcag gtgtggaatg
     1381 acggaacgga tggcggagct ggcggcggcg gcgtcagcgt cgccttcgag gccccgtcat
     1441 ggcagaacgg cctcaaggtc aagccgaagg gtggcctagc cagccccctt gccaagcgcg
     1501 gtgtgccaga tgtcgcggcc gatgcggacc ccgagagcgg ctacgagatc cgggtcgacg
     1561 gtcagaccgc ggtgatcggc ggcaccagcg cggtggcgcc gctctgggcg ggccttgtcg
     1621 ccatcgtcaa cgccgccagc ggcaagcgcg cgggtctcat caacccattg ctctatgcgg
     1681 cgcccgcagc cctgcgggac gtgacgatgg gtgacaatgg catgtatgag gccgatgaag
     1741 gctgggacgc ctgcaccggg cttggcagtc cgaatggcgc cgcagtggcc gcggcgctgg
     1801 ccccgccgcc ctagtcgcgc agcagcggca ggctgaggcc cgagaccggc cgtgcgccca
     1861 ggatttcgcg gcggaagcgg tagagctcgg cggggcggcc gccggtgtcg gcgtccatgc
     1921 ggccaaggcc ctcgaccagg tcggcgcgct ccagggcgcg gcggaagttc tgcttgtgca
     1981 ggggcacgcc ggcgatggcc tcgacggcgc gctgcaaggc cgacagagtg aaagcctcgg
     2041 gcatcagttc gaacaccacc gggcggtatt tcagcttgcc gcgcaggcgg ctgaccgcgg
     2101 tggcgaggat gcgacggtgg tccgagagca tcggctcgcc cagggccgcg gccaggggcg
     2161 cgggcagggc ggtggcggcc tcgccacggt cgcgggcggc ctcgcgagcc agaccggcct
     2221 cgtagagcag ttcgtagcgc tccagcaccc gctcctcgtt ccaggccgcg ccctccagcg
     2281 cgaagagcag gcgcgtacgg ctgagacgct gggcatcgcc ggccgcccag cggcgaaggg
     2341 cctcctcgat cagcgccagg gcggcgggcc ggccttcgcg ccagtcctcg taagggaaga
     2401 accgagtcca aggccgccat tcggagccag gcgcatgggt gtctacggcc gccgtggcca
     2461 gggccagata gcccaccgag atcaccctgg cgtggtcggg gctgtcgccg ccgcgatcgc
     2521 ccatatcggc caggggcgcg tcgcggccct tgtcgccaaa ggtgtagagc tgttcgacat
     2581 agcccagggt gaagcgggtc tgctcggtga cgaaggcccg catggccagt tcaaaggtgc
     2641 ggtggccctt gggatcgaag gggccgaagg gcaggccctc ggcgctggcg cccggcgggc
     2701 gcacggtgag cacgacggcg tcatcctcct ggatggccac caccacagcc gacaggccga
     2761 tgaccactgc gctgtcgagg gaaccgctca ttcggtgtcg aacgccgcgg cgacagaggt
     2821 gtatccagcg gcttcggaca gaacgtggaa gcgttcgatg tagcgctgct gcgcattggc
     2881 cggcggctga ggatcgatct tcaggctgta accggccgga ggggcgtcga aaaaggccag
     2941 ggattccgcg tgggtgaacc cggcaagctg tgtcgcctcg aagaaggcgc aggcgcgatc
     3001 ggcccgcttg atcagggcct tgatcgccgc gggagttttc gcgggcaagc caaagcgcgt
     3061 gtggatggcg ttctccagcc gctcctcgaa gtccttgtag ttgacgccga gcgcggcctt
     3121 gaacggcgag atcatgtcgc cgatcacata ttccgaggcg tcgtgcagca gggcggccag
     3181 gcgccagcgc ggggctatgt ccggctggat gtgggcgacg atctcctcga ccaccaccga
     3241 atgctgggcc accgagaagg cgtgttcgcc gatcgtctgg ccgttccagc gggcgacgcg
     3301 ggccaggcca tgggcgatat cctcgatctc gatgtccatg ggcgaggggt cgagcaggtc
     3361 cagccgccgg ccagacagca tgcgttgcca ggcgcggggt tctttcgccg aacgacgcag
     3421 ccctttcctc acgaaagcat tccctccaca gtcaagccaa tcgggggcaa ggtcgtgaac
     3481 tggcccatgg cctgacaaag atcaatgcga gcctgagttc gcacgggtcg atggcagcat
     3541 aggccctggg ccgctgaagt tcacgtagga ggagccgacc ctatgagctg ggctcgtatc
     3601 atggcgccgc tgtccggcgg tcagggcgat gccgccgcgg tcgccgcagc ggtcatgctg
     3661 gccgaaccct tccaggccga gatggtcggg gtctacacgc ccgccgatgt tgccgatgtc
     3721 atgccctgga tgggcgaggg gttcctgggc ggcgtccaga ccacagcgct ggaatccctg
     3781 aaggaggccg cgcaggtcgg cgaaaagaac gcccgggcgg ccatggagaa gacggtctac
     3841 gccaagagcc gtttcatcgc tctgcagacc cccgtctggg ccgggctgtc ggcggaaagc
     3901 cgactctgcg acgtggtggt gttcgcctcc gacccagcgc gcgggcgcgg gccgctggcc
     3961 gaggcttttc agcagatggt ggcggatgaa cagcgcccgg tgctgatcgc ccgcgatggc
     4021 ctgaaggtcg gcggtgtggt ggcggtggcc tgggatggcg gcaaggaggc gagccgcgcg
     4081 gcgcgcctgg ccctgccgct tctggaaaag gccgccaagg tggtgatcct ggccgcgccc
     4141 aaggcgagtt cccgcagttt cgacgccggc cggctgcagt cctactatgc cgctcgtggg
     4201 gtcgaggccg aggtcgacat ccttccggac accggcgacg cggcgccggt gttgctctat
     4261 gccgcccgaa aatcgggggc cgatatattg gtggccggcg ccttcggcca tcctcggctg
     4321 caggagttca ttttcggggg caccacccgc acgctcttga actcagacgc gccttcgctg
     4381 ttcttgtctc actagctttc ccaaaaggac gtcaaatgac cctgtcacgc atcgtcatgc
     4441 ggcttgcccg caacccgggc accgagttcg caggcggtga cgaccaccgc ggctatgcgc
     4501 tgacggcgcc gttgaccgat gacggccatc tggacgaggc ggcctattcc aaggcgcgcg
     4561 acgcctgcac cgtgcgccgc ttttcgccgg acgaggatcc ggccgacgga cggctggcgc
     4621 gcaggggctc tcgctggttc ttcgactacg aggagggcga catcgtcgac gatgagccgc
     4681 tgcaccgctt gggcgaacat cgctttgcgg tgggcgaata cgtcaccgtc accgacgaag
     4741 atggccggcc gctgacctac aaggtcgttg aagtgcagcc cgcgggctag tgtcccgagg
     4801 ccgggtctct ccacgggcgc aggttggtcg cttcccgcgt cgactgctgg tccatccgcg
     4861 tgcgatccag aatctcatcc ttgcgggcgc agattcgctg ggggaagaga ctgccgagcc
     4921 tgacctcgtc atggcagacg accgtgccac cggcctcggt gctggtgtgg ctgccctgac
     4981 cggtgacggt cacggggctg acgctcctgg cgggcgccgc cgacgacgcg gccgcggcgt
     5041 ggtccgcgac gggcgcggcc tggaaaaaca atgccgtggc ggcaagaaca gcgctgatca
     5101 tggaatatcc tcgaagactg acccgcaaag cctagctgaa atcagcgatt tgtcatcgtt
     5161 gcacttcgca acctcgacgc tcggatcgcc tagaccccgc cgttccggcg caccaggcgc
     5221 ttgatgtcgt cggagacatc gtggcgggtc ccctcatggg ccttgaagac cgccactgtg
     5281 atcggtcccg ccttggggcc ggccgcttcg tagccgacgg ccttccagcc gtccttcagg
     5341 tcgtcccggg ccaggatgaa cgtggccctg aagccgcgct tttccggcga gaaggcctcg
     5401 ccgcgcaggc gtacgtcgcg ggacatacgc acggtggcgc cgttctcgcc ggcgttcaca
     5461 tgcaccatgc cgacattgac gtcggccttg tcatcgtcgg cgttgatgtg gatgccgggc
     5521 aggtcgatgt gggcgtgatc gctatggcgg tcgctggcgt cggagtcatc cttcgagtcg
     5581 ccgtcgtcgt ccttgtcggc tttcttgacg ctgctcttgg cgtcctcggc ggcctgtttg
     5641 gcgacagcgg aggcgtcggt tgcggacgag ctcgcggcct tggcgatggc gacacccggc
     5701 ttgccgtccg ctttggcgtc ggcggccggc tccggctgaa cctcggtctg caactcggcc
     5761 tcgaccggtt gaagagccgt ctcataggcg cccgccgaga ccgcgagcag ccgcagggac
     5821 acctcgtcgc cgtcgcgggt cgaatagagg caggtcttcc tgtccggcgt catggtggag
     5881 agtttcagac cgccgacgtc ggtcgggcag tcaagtgcga cgcgcgctgt gggcggggcc
     5941 atcggcgcgc aggcggaaat cccggtcagc acaagcccgc aggccgagag gaagagcagc
     6001 gacttcatga aaaaggctcc agtccgttcg ctcacgaacc tgaccggagc cccttcaaaa
     6061 ggcgagtgaa ttcgatgtaa cgccggttac gccgtggcta gcgcccggtt tattggcccg
     6121 gccgcgaccc cgcgccctcg cgccgcgcca ggaaggccag gcgctcgaac agatgcacgt
     6181 cctgctcgtt cttcaaaagc gcgccgtgca gcggcgggat gagcttggtg gggtcctttt
     6241 ccttcagcgc gtcggcgtcg atgtcctcga ccatcaagag cttcagccag tcgagcagct
     6301 ccgaagtcga gggcttcttc ttcaggcccg gcaccttgcg catgtcgtag aaaatcctga
     6361 gcgcctcggc aaccagcttc tgcttgatgc ccggatagtg gacctcgacg atctcgttca
     6421 tcgtctcggc ctccgggaag cggatgtagt ggaagaagca gcggcgcagg aaggcgtccg
     6481 gcagctcttt ctcgttgttg gaggtgatca gtacgatggg gcggatcgcg gccttgatcg
     6541 tctcgttggt ctcgtagacg tagaactcca tccgatcgag ttcctgcagc aggtcgttgg
     6601 ggaattcgat gtcggccttg tcgatctcgt cgatcagcag gacgggccgc acggggcttt
     6661 cgaaggcctc ccagagcttg cccttcttga tgtagttctt gacgtccttg acgccaattt
     6721 cgcccagctg gctgtcgcgc aggcgggtca ccgcgtcata ttcgtagagg ccctggtggg
     6781 ccttggtggt cgacttgatg tgccaggtga tcagcggcgc cttgagcgcg cgggcgatct
     6841 cgtaggccag cacggtcttg ccggtgccgg gctcgccctt gaccagcagg ggtcgctcca
     6901 gcgcgatggc ggcgttgacg gcgaccttca ggtcgtcggt ggccacatag tcggcggtgc
     6961 cttgaaagcg cccagtcatc caatcctccg gcgcgacgcg cgcgcctcta cggccaatct
     7021 ttgagttcgg tcagccacac taaggg
//
LOCUS       DATAJL010000863         4388 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_99905,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000863 DATAJL010000000
VERSION     DATAJL010000863.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4388
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99905"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..764
                     /locus_tag="VHN39_16415"
     CDS             <1..764
                     /locus_tag="VHN39_16415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX2817977.1"
                     /translation="VEEGGEVTAFYDPMIAKLIAHAETRELALSELAEACDGVEVWPV
                     RTNAGFLARCLEQPDFIAGDLDTGFIERNLAELTAAPEPSPAALSAAAEAAMVVDETQ
                     TPDASPWRDLAGFRLNAPPETTVRLFFGGKPVLARAVETAAPRSVLLTDADEIVVFEA
                     GEAFVFLSHPPAADEVGAAADGQIRSPMPGKVTQLSVKAGETVTKGQALLTLEAMKME
                     HALTAPFDGTVESVAVTLGAQVSEGATLIKLTAAA"
     gene            complement(761..2050)
                     /locus_tag="VHN39_16420"
     CDS             complement(761..2050)
                     /locus_tag="VHN39_16420"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX2817978.1"
                     /translation="MARAAKSAPTHPDIWLAAGVRTPFAKAGGVLAKMDALDLSVPVV
                     KAMLAKARPDLMNWGAVIPNLTISNLAREALIEAGGDATIPASSTVMACSTSMVGAFQ
                     AAGMLDDRGRSLALVGGAEAMSRIQIGLSPGLSDDLRAFMEARDLAGRWAAVRGTRAR
                     DIRLFIPQIKNRATGKSMGEHTEEMAKGWQISRVEQDELALASHKKAAAGWQSGFFDD
                     LVLRLDEVGRDTLIRPDSSLEALARLKPVFDRTSGAGTLTAGNSSPLTDGAAAIWVAT
                     AKGLERLPPDVPRTRLVDYEVNAIDLFNEYLLMAPAYSIPRLLARNGLTYEDVGLWEL
                     HEAFTAQVATHIKALQDPAFLKDKAKVSAKLGKFPMDRLNPNGGSTAIGHPFGATGAR
                     ILSQGVKELYAMPSGTWAVVSICADGGQGTVALLRRD"
     gene            complement(2123..3091)
                     /locus_tag="VHN39_16425"
     CDS             complement(2123..3091)
                     /locus_tag="VHN39_16425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817979.1"
                     /translation="MMKPVRLFLMAAALLIGAPAAAADYHAPRNALGQPDLQGVWNTH
                     FFLPMEARPDMPSLTLPEAEAIAYSRKLNVEAGELAIFAQDPEVAEIRSDPSRSDLAI
                     VRGQRRTRQVVQPADGMLPLTRGMRGQMRFIEQALRTQVEPPFSKDDPEVRPSWERCV
                     VGWGQPPIVSTSDVNPRQIVQTKDAVVILTEYGPDLRIIPLTGQHGPLLQASALGDAI
                     AHWEGETLVIETIGMPAKDAIRPFPTLFVAASAKVIERYTRVSKTELLYQYTVVDPAI
                     YTAPWLAEYSLYSQAKPILEFACHEGNYSLPNILAGARQQEHAAAR"
     gene            complement(3088..4308)
                     /locus_tag="VHN39_16430"
     CDS             complement(3088..4308)
                     /locus_tag="VHN39_16430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX2817980.1"
                     /translation="MYDLLKGLRVVEGSAFVAAPTCGLYLAQMGAEVIRFDNIGGGPD
                     FRRWPLAENGSSLYWEGLNKGKKSVALDLSSPTGREIAQRLATAPGKDTGLFITNFPV
                     EGFLSYERLRALREDLICVRVMGWADGSQGMDYTINAALGLPQMTGPADDPRPVNHVL
                     AAWDLLTGAYCAFGMVSALLARMRDGQGREIRAPLSDIGAATMANLGFTAEAMLSGHQ
                     RPRMGNDIFGAFGRDFVTRDGQTLMLLAITPKQWGKALEALGLAAEVAGLEAELGVSF
                     VTDEGLRFTHRARLYPLFEQAFARRTAADLAPAFDAGGVTWGAYQPLEAALDDPRLYK
                     DNPAFQTIRHPSGLSYPAPGAMATIPQDPRGEVQPAPRLGQHTDEVLADVLGMSGTEI
                     GRLHDAGVVAGADG"
BASE COUNT          636 a         1550 c         1507 g          695 t
ORIGIN      
        1 gcgtcgagga gggcggcgag gtcaccgcct tctatgaccc gatgatcgcc aagttgatcg
       61 cccacgccga gacccgcgaa ctggcgctct ccgaactggc cgaggcctgc gacggggtcg
      121 aggtctggcc ggtccgaacc aacgccgggt tcctggcccg ctgtctggag cagcccgact
      181 tcatcgccgg cgatctcgac accgggttca tcgagcgcaa cctcgccgag ctcaccgcgg
      241 cccccgagcc gtccccggcc gctctgtcgg cggccgccga agccgccatg gtggtcgacg
      301 aaacccagac ccccgacgcc tcgccctggc gcgacctggc cggcttccgc ctgaacgccc
      361 cgccggagac caccgtgcgg ctgttcttcg gcggcaagcc agtcctcgcc cgcgccgtcg
      421 agaccgccgc cccgcgctcg gtgctgctga ccgacgccga cgagatcgtg gtcttcgagg
      481 ccggcgaggc cttcgtcttc ctgtcccacc cgcccgcggc cgacgaggtc ggcgccgccg
      541 ccgacggcca gattcgctcg cccatgcccg gcaaggtcac gcagctctcg gtcaaggccg
      601 gcgagacggt gaccaagggc caggccctgc tgaccctgga agccatgaag atggagcacg
      661 ccctcaccgc gcccttcgac gggacggtgg agagcgtcgc ggtgaccctg ggcgcccagg
      721 tcagcgaggg cgccacgctc atcaaactga cggctgcggc ctagtcccgc cgcagcagcg
      781 ccacggtccc ctggccacca tccgcgcaga tgctcaccac cgcccaggtc ccggacggca
      841 tggcgtagag ctccttcacc ccctggctga ggatgcgcgc gccggtggcg ccgaacgggt
      901 ggccgatggc ggtcgagccg ccattggggt tcagccggtc catggggaac ttgccgagct
      961 tggcgctcac cttggccttg tccttcagga atgccgggtc ctgcagcgcc ttgatgtggg
     1021 tggcgacctg ggcggtgaag gcctcgtgca gttcccacag gcccacgtcc tcataggtca
     1081 ggccgttgcg ggccagcagg cgcgggatcg aataggccgg cgccatcaag aggtactcat
     1141 tgaagaggtc gatggcgttg acctcatagt ccaccagtct cgtgcggggc acgtcgggcg
     1201 gcagccgttc cagccccttg gctgtcgcca cccagatggc cgccgcgcca tcggtgagcg
     1261 ggctcgaatt gccggcggtc agcgtgccgg cgccgctggt ccggtcgaaa actggcttga
     1321 gcctcgccag cgcctccaga ctggagtccg gccggatcag ggtgtcgcgg cccacctcgt
     1381 ccagcctgag caccaggtcg tcgaagaagc cgctctgcca gccggcggcg gctttcttgt
     1441 ggctggccag cgccagttcg tcctgttcga cgcggctgat ctgccagccc ttggccatct
     1501 cttcggtgtg ctcgcccatg gacttgccgg tcgcccggtt cttgatctgc ggaatgaaca
     1561 gccggatgtc tcgcgccctg gtcccgcgca cggcggccca gcgcccggcc aggtcgcggg
     1621 cttccatgaa ggcgcgaagg tcgtcggaga ggcccggcga gagcccgatc tggatgcggc
     1681 tcatggcctc ggccccgccg accagcgcga ggctgcggcc ccggtcgtcg agcatgcctg
     1741 cggcctggaa ggcgccgacc atgctggtgg agcaggccat caccgtcgaa gacgccggga
     1801 tggtcgcgtc gccgcccgcc tcgatcagcg cctcgcgggc caggttgctg atcgtcaggt
     1861 tggggatcac cgcgccccag ttcatcaggt ccggccgtgc tttcgcgagc atggccttga
     1921 ccaccgggac cgacaggtcg agcgcgtcca ttttcgccaa taccccgccg gccttggcga
     1981 agggcgttcg cacgccggcc gccagccaga tgtcggggtg ggtcggagcc gatttcgccg
     2041 cacgcgccat gagagcctcc tgtcagctcc acagaaatgg ccccgcaggt gcggcttgga
     2101 aaggcggctg actccgggcg gcttatcgcg ccgccgcgtg ttcctgctgg cgggcgcccg
     2161 ccaggatgtt ggggagcgag tagttgccct cgtggcaggc gaactcgaga atcggcttgg
     2221 cctggctgta gagcgaatat tccgccagcc acggcgcggt gtagatcgcc ggatcgacta
     2281 ccgtgtactg gtagagaagc tcggttttcg acacccgcgt atagcgctcg atcaccttgg
     2341 cgctcgcggc gacgaacagc gtcgggaatg gccggatcgc gtccttcgcc ggcatgccga
     2401 tggtctcgat caccagggtc tcgccctccc agtgggcgat cgcgtcgccc agagccgatg
     2461 cctgcagcag cgggccgtgc tggcccgtga gggggatgat ccgcaggtcc gggccgtact
     2521 ccgtcaggat caccaccgcg tccttggtct ggacgatctg gcggggattg acgtcgctgg
     2581 tgctgacgat cggcggctga ccccagccca ccacacagcg ctcccagctc gggcggactt
     2641 cggggtcatc cttggagaac ggaggctcga cctgggtacg cagcgcctgc tcgatgaagc
     2701 gcatctggcc gcgcatgccc cgcgtcagcg gcagcatgcc gtcggcgggc tgcaccacct
     2761 ggcgggtccg ccgctgaccg cggacgatag ccaggtccga ccggctgggg tcgctgcgga
     2821 tttcggcgac ctcgggatcc tgcgcgaaga tcgcgagctc gccggcctcc acgttcagct
     2881 ttcgggagta ggcgatcgcc tcggcctccg gcagcgtcag gctcggcatg tccggccgcg
     2941 cttccatcgg caggaagaag tgggtgttcc agacgccctg caggtcgggc tggccgagcg
     3001 cattgcgcgg cgcgtgatag tccgccgccg ccgcgggcgc gccgatcagc aaggctgcgg
     3061 ccatcaggaa aagtctcacc ggcttcatca tccgtcggct cccgccacca cacccgcatc
     3121 atgtaggcgc ccgatctcgg tcccgctcat gcccagcaca tcggccagca cctcatcggt
     3181 atgctgacca agtcgtggcg caggttgaac ctcgccgcgc ggatcctgcg ggatcgtcgc
     3241 catggcgccg ggcgcgggat agctgaggcc gctgggatgg cggatggtct ggaacgctgg
     3301 attgtccttg tagagccgcg ggtcgtccag cgcggcctcc agcggctggt aggcgcccca
     3361 ggtgaccccg ccggcgtcga aggccggcgc gaggtcggcg gcggtgcgtc gggcgaaggc
     3421 ctgctcgaac agcgggtaga ggcgcgcccg gtgggtgaac cgcagaccct cgtcggtgac
     3481 gaaggaaacg ccgagctcgg cctccaggcc cgcgacctcg gccgccagcc ccagcgcctc
     3541 cagcgccttg ccccattgct tcggcgtgat cgccagcagc atcagggtct ggccgtcgcg
     3601 cgtcacgaaa tcgcggccga aggcgccgaa gatgtcgttg cccatcctgg gccgctgatg
     3661 gcccgacagc atcgcctcgg cggtgaagcc gaggttggcc atggtcgccg ccccgatgtc
     3721 cgaaagcggc gcgcggatct cgcggccctg gccatcccgc attctggcca gcagggccga
     3781 gaccataccg aaggcgcagt aggcgccggt gagcaggtcc caagcggcca gcacgtggtt
     3841 caccggccga ggatcgtctg ccgggccggt catctgcggc aggccgaggg cggcgttgat
     3901 cgtgtagtcc atgccctgcg agccgtcggc ccagcccatg acgcgcacgc agatcaggtc
     3961 ctcgcgcagg gccctcagcc gttcgtagga caggaacccc tccaccggaa aattcgtgat
     4021 gaagagcccg gtgtccttac cgggcgccgt cgccagccgc tgggcgattt cgcggcccgt
     4081 ggggctggag aggtccaggg ccaccgactt cttgcccttg ttcagaccct cccagtagag
     4141 gctcgatccg ttctcggcga gcggccagcg gcggaagtcc ggcccgccgc cgatgttgtc
     4201 gaagcggatc acctccgcgc ccatctgggc cagatagagc ccgcaggtcg gcgcggcgac
     4261 aaacgctgag ccctcgacga cgcggaggcc tttgaggagg tcgtacattc cgtcgatccg
     4321 tcagtcagtt ctcacggtcc gcccagccga ccgtggcctt acctctccgg attcgtcggg
     4381 gccatgtc
//
LOCUS       DATAJL010000864         2070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87032,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000864 DATAJL010000000
VERSION     DATAJL010000864.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87032"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..563)
                     /locus_tag="VHN39_16435"
     CDS             complement(<1..563)
                     /locus_tag="VHN39_16435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEX2817981.1"
                     /translation="MTLFDSPAFEGHEGVHAFFDENSGLKCIIAVHSTARGPAAGGCR
                     MWPFPSADAALEDALRLSRAMSYKNAMADLELGGGKAVIIGDSRTQKTPALFEAFGRA
                     VEDVGGKYWTAEDVGVSPADLMHARKSTRYVAGLEGHMGASGDPSPVTAEGIFRGVTL
                     GVRRALNRDLDGVTVAIQGVGHVGAYLA"
     gene            complement(642..1661)
                     /locus_tag="VHN39_16440"
     CDS             complement(642..1661)
                     /locus_tag="VHN39_16440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2817982.1"
                     /translation="MTRLLAALFATILLSACTPLMVQQAGMPPLGFGGARIEASDIVS
                     FDGARLGLSEWDAPGDPWAVIVGVHGMNDYANAFHMAAPWWAEQGVTTVAYDQRGFGR
                     SPGRGVWAGDALMVEDLRTVTALVRRKYPHAVVVVAGESLGGAVAAEAFASDRPPTAD
                     RLVLLSPAVWGWREQPLPYKTLLWFAANFTGPKVYTPPDWLTSKVSPSDNHDELVAMG
                     RDPLMIWGARSDTLYGLVTAMDKAADEVGKSSLPTFYLYGAHDQIIPKKAAFKAASQL
                     KPTDRSAYYAKGWHLMTRDHEGPMVWKDILAFIRDPAAPLPSGAPKIPTAPGPAGQSQ
                     TADGS"
     gene            complement(1720..2004)
                     /locus_tag="VHN39_16445"
     CDS             complement(1720..2004)
                     /locus_tag="VHN39_16445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018082037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3253 domain-containing protein"
                     /protein_id="HEX2817983.1"
                     /translation="MAENVEAAIFDLLNAKVAPGKSVSPEEVARAVDPEGWRRLLGQV
                     RAIARGLARQGKLVILRHNKPADPEKLKGVYRLRLPMPGDEPPQEAEAEA"
BASE COUNT          308 a          715 c          729 g          318 t
ORIGIN      
        1 gccaggtagg cgcccacgtg gccgacaccc tggatcgcca cggtgacccc gtcgaggtcg
       61 cggttcagtg cgcggcggac gcccagcgtg acgccccgga agatgccctc ggcggtgacc
      121 gggctcgggt cgccggacgc acccatgtgc ccttcaaggc cggccacata gcgggtcgac
      181 ttgcgggcgt gcatcaggtc ggcgggcgag acgccgacat cctcggccgt ccagtacttg
      241 ccgcccacgt cctcgaccgc gcggccgaag gcttcgaaca gggcgggcgt cttctgggtc
      301 cggctgtcgc cgatgatcac ggccttgccg ccgcccagct ccaggtcggc catggcgttc
      361 ttgtaggaca tggcgcgcga caggcgcagc gcgtcttcca gcgccgcgtc ggcgctcggg
      421 aacggccaca tgcggcagcc gccggccgcg gggccgcggg ccgtggagtg cacggcgatg
      481 atgcatttga ggccggaatt ttcgtcaaag aacgcgtgga cgccttcgtg gccctcaaag
      541 gcaggcgaat cgaacaaggt catgccgcgg acatcactga tgttgggaga ggaattgcgt
      601 gccctgcctc tacgcctgac cggttaacgg aacaaccccg atcaggaccc gtcggcggtc
      661 tgcgactggc ccgcgggccc gggcgcggtg gggatcttgg gcgcgccgga cggcagcggc
      721 gcggccggat cgcggatgaa ggccaggatg tccttccaga ccatcggccc ctcatgatcg
      781 cgggtcatca ggtgccagcc cttggcgtaa taggccgagc ggtcggtggg cttgagctgc
      841 gaggcggcct tgaacgcggc cttcttgggg atgatctggt cgtgggcgcc atagaggtag
      901 aacgtcggca ggctggactt gcccacctca tcggccgcct tgtccatggc cgtgaccagg
      961 ccatagagcg tgtccgaccg cgccccccag atcatcagcg gatcgcgccc catggcgacg
     1021 agttcgtcgt gattgtcgga cgggctgacc ttggaggtca gccagtccgg cggggtgtac
     1081 accttggggc cggtgaagtt ggcggcgaac cagagcaatg tcttgtaagg cagcggctgc
     1141 tcgcgccagc cccagaccgc cggcgacagc agcaccaggc ggtcggctgt cggcggccga
     1201 tccgacgcga aggcttccgc cgccaccgcc ccgcccaggc tctcgccggc caccaccacg
     1261 acggcgtggg gatatttccg gcgaaccagc gcggtgaccg tgcgcaggtc ctcgaccatc
     1321 agggcgtcgc cggcccagac gccacggccg ggcgagcgtc caaagccgcg ctggtcgtag
     1381 gcgacggtgg tcaccccctg ctcggcccac cagggcgcgg ccatgtggaa ggcgttggcg
     1441 tagtcgttca tcccgtggac gccgacgatc accgcccagg gatcgcccgg cgcgtcccat
     1501 tcggacaggc cgagcctggc gccgtcgaaa ctcacgatgt cgctggcctc gatccgcgcg
     1561 ccgccgaagc ccagcggcgg catgccggcc tgctgcacca taagcggcgt gcaagcgctc
     1621 agcaggatcg tggcgaagag ggctgcgagg aggcgcgtca tcggacctac aacttagaac
     1681 accctcggcg gttggcgagc gcggcagatc gtccccgtct cacgcctcgg cttcggcctc
     1741 ttgcggcggc tcgtccccgg gcatgggcag gcgcaggcga tagacgccct tcagcttctc
     1801 cggatcggcc ggcttgttgt ggcgcaggat caccagcttg ccctggcgcg ccagtccgcg
     1861 ggcgatggcg cggacctggc ccagcagcct acgccagccc tcgggatcga cggcccgggc
     1921 gacctcctcc ggtgacacgg acttgcccgg cgcgaccttg gcgttgagga ggtcgaagat
     1981 cgcggcctcg acgttttcgg ccatctagcc gccccgcttc agggtctcac gcgcgatgac
     2041 cacctgctgg atctggctgg tgccctcgta
//
LOCUS       DATAJL010000865         2021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87079,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000865 DATAJL010000000
VERSION     DATAJL010000865.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87079"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(36..1622)
                     /locus_tag="VHN39_16450"
     CDS             complement(36..1622)
                     /locus_tag="VHN39_16450"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX2817984.1"
                     /translation="MSELQSKEVDADGRAALLLAAGLTLARVIALFRTPLELYPDEAQ
                     YWLWSRALAFGYYSKPPMIAWAIWASTAFGGDTEPWVRLPAVLFQGAATMVVFWIGRR
                     LYGSRTALAATALYALTPAIQLSATVVAADAPLLFFIGLTIWAYANLLGAQGRRRLML
                     AAAVGAALGLAFLSKYAAIYALIGIGLHAGVWPAARRSWSPATAGLALATFLAVLGPN
                     LAWNAAHGFATLQHTAADAHWTRGGLVNPVEFAEFLAAQFAIFGPIPFAVLIAGSGLL
                     AWRRRLEPADVLLLCFTLPPIAIVAVQAFLSRANANWSGASYLPGAILVAAWLMRWRA
                     RRVLIAALAIQAVVAAGFLTLVLKPRIADALGQANSLKRARGWAQTADIVVRKARAVQ
                     PGGLSAIAVNNRFLYYSMAYYGRDYFREPLAAPLKIWIRGTLAGNQAEASAPLTSAVG
                     QRVLVAAYETWFDTEIAADFAQVADPEIDDIWLDRKHQRRLDMFVGEGFRPQPRDPKT
                     GYPTPPWRPGNAVSSSPRSP"
BASE COUNT          344 a          697 c          721 g          259 t
ORIGIN      
        1 gacctgcggg atcggctgcg gccgcgaccg gacgctcagg gtgatctggg ggaagagctg
       61 accgcattgc ccgggcgcca tggcggcgtc ggatagcccg tcttcggatc acgcggctgc
      121 gggcggaagc cctcacccac gaacatgtcc agccggcgct ggtgcttgcg gtccagccag
      181 atgtcgtcga tttccggatc ggcgacctgg gcgaaatcgg cggcgatctc ggtgtcgaac
      241 caggtctcgt aggcggccac caggacccgc tggccgacgg ccgaggtcag cggcgcgctg
      301 gcctccgcct ggttgccggc aagcgtcccc ctgatccaga tcttcagcgg cgcggccagc
      361 ggctcgcgga aatagtcccg cccgtaatag gccatcgaat agtagagaaa gcggttgttg
      421 accgcgatgg cgctcaggcc gccgggttgc acggcgcgag ccttgcgcac gacgatgtcg
      481 gcggtctgcg cccatccccg ggcgcgcttg aggctgttgg cctggcccag ggcgtcggcg
      541 atgcgcggct tgaggaccag cgtcaggaac cccgcggcca ccaccgcctg gatcgccagc
      601 gccgcgatca gcacccgcct cgcccgccag cgcatcagcc aggccgccac caggatggcg
      661 cccggcagat agctcgcgcc cgaccagttg gcgttggcgc ggctgaggaa ggcctgcacc
      721 gccacgatgg cgatgggcgg cagggtgaaa cagagcagca ggacgtcggc cggctccagg
      781 cgtctgcgcc aggccaggag acccgagccc gcgatcagga ccgcgaaggg gatcggcccg
      841 aagatcgcga actgggcggc gaggaactcc gcgaactcga ccggattgac cagcccgccg
      901 cgggtccagt gggcgtcggc ggcggtgtgc tgaagggtgg cgaatccgtg ggcggcgttc
      961 caggcgaggt tcggccccag gaccgccagg aaggttgcga gcgccaggcc cgccgtggcc
     1021 ggcgaccagc tccgccgggc ggccggccag acgcctgcat gcaggccgat gccgatcagg
     1081 gcgtagattg cggcgtattt gctgaggaag gccaggccca gcgccgcgcc gaccgccgcc
     1141 gccagcatca gccgccgccg gccctgcgcg cccagcaggt tcgcataggc ccagatcgtc
     1201 agcccgatga agaacagcag gggcgcgtcg gcggcgacca ccgtggccga gagctggatc
     1261 gcgggcgtca gggcatagag cgccgtggcc gccagggcgg tcctcgatcc gtagagccga
     1321 cggccaatcc aaaagaccac cattgtcgcc gcgccctgga acagcaccgc cggcagccgc
     1381 acccagggct cggtgtcccc gccgaacgcc gtcgaggccc agatcgccca ggcgatcatg
     1441 ggcggcttcg aatagtagcc gaacgccaac gcccgcgacc aaagccagta ctgggcctcg
     1501 tcggggtaga gctccagcgg tgtacggaag agcgcgatca cgcgggcgag cgtcaggccg
     1561 gcggccaaca agagcgcggc gcgcccatcg gcgtccacct ccttcgactg cagttcagac
     1621 atcggggggc gcgccatgga ggcggaccct agccgcaacc gggcgcccgc aggaaggcgc
     1681 cggcgccaca cttcccggct tactcgcaag cttcaccgcg cgacctgttg tcaccgtagc
     1741 aaaagcgtca ccatcggatg cgatttgcac gctatagggc taaatcaaga caagcgaagc
     1801 cgccgggggt ggcggcttcg gggcattcca agaggggata acatgcatct gaaactgaac
     1861 cgcgcgctgt gcgcgaccac agccttggcc tcgggcctgc ttctggcgac cggcgcgttt
     1921 gcgcagtcca cggcgacgca agtgcaggaa ctcgtcgtca ccggcgcccg cgggctgccg
     1981 tccgtcgccg gcgtcatcac gcaggtccag gaggctaagg a
//
LOCUS       DATAJL010000866         1959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87122,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000866 DATAJL010000000
VERSION     DATAJL010000866.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87122"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..633)
                     /locus_tag="VHN39_16455"
     CDS             complement(<1..633)
                     /locus_tag="VHN39_16455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817985.1"
                     /translation="MPDEQIDPASLQGDALTQWYLRSPADIEDERQAAAARRYQEFFG
                     GYPGADPDPGFDRGYEAPAHDIDPGFSRGFDAPTMDVDPGFSWVQAGPNRWRSVPNST
                     SPDVGDASTSQVGPSTDEGSANAFAASPPIAFEGTDGGWDAAGPLGATQAPYPTSTGA
                     EAIRSAADEGPQGNAQASDYDPAADIELAPVQLADTSGGLLTQPTFGFARG"
     gene            complement(880..>1959)
                     /locus_tag="VHN39_16460"
     CDS             complement(880..>1959)
                     /locus_tag="VHN39_16460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HipA family
                     toxin"
                     /protein_id="HEX2817986.1"
                     /translation="DEGQREAVARALGVSKQNDFRLLEQLGGDVAGALTLWPEGEVPP
                     SAGSMAAAEPLEDARLVEILDTLPTRPFLAGAEEGLRLSLAGAQQKLPVVLVNGRIAL
                     PTPGQPSTHILKPPISRLPGTTENEALAMRLAQRVRLWVAPVEPRWTEDRPYLLVERY
                     DRVVDADGAVRRLHQEDFCQALGIAPEKKYASEGGPTFQSCFDLVRRASSQPARGVIN
                     LLETAIFNVILGNADAHGKNFSLLYGPCGGIELAMLYDLMCTAAYPDVHAKFAMKIGK
                     RATLAEFTASTWEDFAREIGMGAPFVRRRAGILAERTLEVLPGAADEIANLGFEGPEL
                     RRIQEVVQGRARAVRDLAATTKAGG"
BASE COUNT          323 a          641 c          642 g          353 t
ORIGIN      
        1 cccacgagca aatccaaatg tgggctgggt gagcaggccg ccgctggtat ccgccagttg
       61 caccggcgcg agttcaatat cggccgccgg atcgtagtct gacgcttgcg cattgccctg
      121 cgggccttca tccgccgcgg accgaatggc ttccgctccc gtagaagttg ggtagggagc
      181 ttgggtcgcg ccaagtggcc cagcagcgtc ccaccccccg tctgtccctt cgaacgcgat
      241 gggtgggctt gcggcgaagg cattggccga gccctcatcc gtactcgggc cgacctgaga
      301 ggtggaggcg tctccaacat ctggcgaggt tgagttaggc acgctgcgcc agcgatttgg
      361 ccctgcctgg acccagctga agcccgggtc cacgtccatc gtaggcgcat cgaaccctcg
      421 actgaaccca ggatcaatat catgggctgg cgcctcgtat cctcgatcaa atcccgggtc
      481 tggatcggcg ccgggatatc caccgaagaa ctcttgatag cgacgcgcgg ccgccgcttg
      541 gcgctcgtct tcgatgtcgg cgggagatcg gagataccac tgggtaaggg catcgccctg
      601 caggcttgcg gggtcgattt gttcgtcggg catgactgct ctccatcagg catggttgaa
      661 cacgcccgca ccttggacag gtggcgcggg ctaaggggtt gagttcggga acgagcacgt
      721 cagtcgatgc ctgaccgcat ctccccacgc tcaaggtagc ttaccaaaga tgcgcgggtt
      781 cgtcaagaac aaaagaagaa catctcaaag gccgcgagcc atcgccgata gtgcttggct
      841 gatgggtggg ttccgccctg acggtagtgt cgagcaggcc tagccgccgg ccttggtcgt
      901 tgcggcaagg tcgcggacgg cccgggcgcg gccctggacg acctcctgga ttcggcgcag
      961 ctccggccct tcgaatccca ggttagcgat ctcgtcggcg gcgcccggca gaacctcaag
     1021 cgtccgttcc gcgaggattc ctgccctgcg ccgaacaaag ggtgcgccca ttccgatctc
     1081 gcgggcgaag tcttcccagg tgctggctgt gaattccgcc agggtggcgc gcttgccgat
     1141 cttcatcgcg aacttggcgt ggacgtcggg gtaggcggcc gtgcacatca ggtcatagag
     1201 catggccagc tcgatcccgc cgcagggccc gtagagcagg ctgaagtttt ttccgtgagc
     1261 atcggcgttg ccgaggatca cattgaagat cgctgtctct aggaggttga tgaccccccg
     1321 ggcaggttga gaggaggcgc gccgcacaag gtcgaaacac gactggaagg tcgggccacc
     1381 ctctgaggcg tacttcttct ccggcgcgat ccccagcgcc tggcagaagt cctcctggtg
     1441 cagacggcgc acggccccgt cggcatcgac cacacgatcg taccgctcca cgagcaagta
     1501 gggccgatcc tccgtccagc gcggttccac cggcgccacc cacagccgga ctcgctgggc
     1561 caagcgcatg gccagcgcct cgttctcggt tgtccccggc agccttgaga tcggcggctt
     1621 gaggatgtgg gtgctgggct ggcccggcgt cggtagggcg atgcggccgt tcacgaggac
     1681 cacggggagt ttctgttggg cgccggccag tgacaggcgc aggccctctt ccgcccccgc
     1741 caagaacggc cgggtcggaa gggtgtcgag gatttccacc aggcgcgcgt cttccaacgg
     1801 ctcggccgcg gccatgcttc ccgcgctcgg cggaacttcg ccctccggcc agagtgtcag
     1861 ggcgcctgca acatcaccgc cgagctgctc caacagccgg aagtcgttct gcttggacac
     1921 ccccagcgct cgcgccacgg cttcacgctg tccctcgtc
//
LOCUS       DATAJL010000867         5387 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_73439,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000867 DATAJL010000000
VERSION     DATAJL010000867.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5387)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5387)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5387
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73439"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(166..1050)
                     /locus_tag="VHN39_16465"
     CDS             complement(166..1050)
                     /locus_tag="VHN39_16465"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX2817987.1"
                     /translation="MTAAMAASPAPALKGRSLWDDARRRLLRNRGAVTGMLVLGLLVA
                     AAAVGPALTPWGYDQVNKTDVWFAPLQHGHLFGTDALGRDLLARLLMGLRVSLAIGLV
                     ATVVSLAIGVAWGSVAGFVGGRLDEVMMRFVDVLYSLPFIFFVILLMVTFGSNFILIF
                     VAIGAVEWLTMSRIVRGQTLTLKHKEFVEAARAAGLGRGGIIARHIVPNLLGPVVVYV
                     TLTIPAVILAESFLSFLGLGVQPPMASLGTLIASGASDMELAPWLLTFPSAVMVVTLM
                     SFNFIGDGLRDAIDPQDR"
     gene            complement(1047..1970)
                     /locus_tag="VHN39_16470"
     CDS             complement(1047..1970)
                     /locus_tag="VHN39_16470"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEX2817988.1"
                     /translation="MFRFIGRRLLVAIPTLFLVVTLAFFMMRAAPGGPFDTDRKLSPA
                     IEKNVLARYGMNRPLGAQYLSYLAGVVHGDLGPSLKYRDKSVLEILKENYLVSLKLGG
                     SAILLAALIGVSLGVLAAMRQNRAVDYGVMTVAILGVCIPTFVTAPLLVLAFASKLGW
                     LPSAGWNGGALVNMVLPVTVLALPQIAIISRLTRAGMVEVLHSNYVRTARAKGLPEGR
                     IVTHHALRAALLPLVSYLGPACAGLITGSLVVEKIFNLPGLGKFFVISALQRDYTVVM
                     GMVIFYAALILTLNLIADLAYAALDPRVRLA"
     gene            2086..2496
                     /locus_tag="VHN39_16475"
     CDS             2086..2496
                     /locus_tag="VHN39_16475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01244 family sulfur transferase"
                     /protein_id="HEX2817989.1"
                     /translation="MSDFRRVTDDFTTAPQISVADVAEAARQGFTAIICNRPDGEDPG
                     QPTVAEIKGAAEASGLTYTHIPVRGAPGPAEVEAMRQAVDAASGPVLAYCRSGTRSIT
                     TWAIGQAMSGARERGELVSLGRAAGYDLSGALGG"
     gene            2493..3389
                     /locus_tag="VHN39_16480"
     CDS             2493..3389
                     /locus_tag="VHN39_16480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2817990.1"
                     /translation="MIPYVRDITFDYGACDQVSPLIRRVVANNPGPFTFKGTGTYIVG
                     KGEVAVIDPGPDDPAHLAAILAAVAGERVSHILITHHHSDHSPLAGPLKATTGAVIYG
                     CAVAGHEEEDTGEVKMEAGHDHDFRPDISLCGGGEISGPGWTMQAIPTPGHTSNHLCY
                     ALKEENACFTGDHIMGWSTTVITPPDGDMTDYLASLEVIKARNFTTLWPTHGPPILEV
                     TPFIDAYLAHRQERMDQILLALANGPACIRDLVPKLYRDVDERLWPAAARSMLAAIIH
                     LERGGDIEAGGPPGPDTIYRLS"
     gene            3457..5037
                     /locus_tag="VHN39_16485"
     CDS             3457..5037
                     /locus_tag="VHN39_16485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2817991.1"
                     /translation="MFKLTLPLAVLACAVLLAPMATAAPSPTVVKIEAGRLQGAASDG
                     VLAFKGVPFAEQPVGDLRWRPPQKAKPWTGVKPALKNGHDCLQAEVKGDPGMGTDLGE
                     DCLYLNVWRPAGASAKKLPVMVWIYGGGLVNGGTQPAIYQGDNFARGGVVFVSINYRL
                     GRFGFFAHPALTAEHPDEIKGNYGYMDQLAALKWVQRNIAAFGGDPKQVTLFGESAGG
                     FSVHVLVASPMGKGLFQRAIVESGGGRTNEGAAPSIGAAEATGMAFAKAQGIEGGGAA
                     VLARLRALPAATVTGNLNMFTSNANAATYPGPVTDGKLVVETPQAAYLGRRQAKVALM
                     VGANGADLGFNTSPTIDALMAPFGVDKAKALTAYDPDGTGALARIRSKVGMDQLMEEP
                     ARFDAQTFAAQGLPAWEFRFDYVGEALKARSPNGAAHASEIPYVFDKYEAPYIAMVTP
                     NHAGQPSAADKAMAVTIHSYWLNFAKTGDPNGPGLPAWPRYDPAKDNLMLFRGDGVVA
                     ATADPLKTRLDLTAATQR"
     gene            complement(5040..>5387)
                     /locus_tag="VHN39_16490"
     CDS             complement(5040..>5387)
                     /locus_tag="VHN39_16490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2817992.1"
                     /translation="HLLVWRDATGELQGHVWLEPQADGVWYLGLLSVRPDRQDQKLGR
                     TLLTAAEDVARDRGAARVRLTVINVRDTLIAWYERRGYALTGEIRPFPYGDDRFGRPR
                     RDDLSFVVLERGL"
BASE COUNT          939 a         1957 c         1750 g          741 t
ORIGIN      
        1 cggtgaagat caagaaggcc gccatgggca gctacctgat gaccgtcggc aaccagcggg
       61 cggtcaaggt ccaccgggaa gagtagccgc tcttccctct ccgcttggcg ggaagggagc
      121 taccggtccc ccgctcggcc cggctcacgc cgggacgagc agaccttagc gatcttgggg
      181 gtcgatggcg tcgcgcaggc cgtcgccgat gaagttgaag ctcatcaggg tcacgaccat
      241 caccgccgag gggaaggtca gcagccaggg cgcgagctcc atgtccgacg ccccgctcgc
      301 gatcagggtg ccgagcgagg ccatcggcgg ctgaacgccg agccccagga agctcaggaa
      361 gctctcggcc aggatcacgg cggggatggt cagcgtcaca tagaccacca ccgggcccag
      421 caggtttggc acgatgtgcc gcgcgatgat cccgccgcgc cccaggccgg cggcccgcgc
      481 cgcctcgacg aactccttgt gcttcagcgt cagcgtctgg ccgcgcacga tccggctcat
      541 ggtcagccac tccaccgctc cgatggccac gaagatcagg atgaagttcg acccgaaggt
      601 gaccatcaaa aggatcacga agaagatgaa cggcagggag tagagcacgt cgacgaagcg
      661 catcatcacc tcgtccaggc gcccgcccac gaagcccgcc accgaacccc aggcgacccc
      721 gatcgccagc gacacgacgg tcgccaccag gccgatggcc agcgagaccc gaaggcccat
      781 cagcaaccgc gccaggaggt cgcggccgag cgcgtcggtc ccgaagaggt gcccgtgctg
      841 caggggtgcg aaccagacgt cggtcttgtt cacctggtcg tagccccagg gggtgagcgc
      901 cggcccgaca gcggcggcgg ccaccagcag gcccagcacc agcatgccgg tcaccgcgcc
      961 ccggttgcgc agcagccgcc ggcgcgcatc gtcccagaga ctgcgcccct tgagcgccgg
     1021 cgccggggat gcggccatcg cggcggtcac gccagcctca cgcgcggatc gagcgctgca
     1081 taggcgaggt cggcgatcag gttcagtgtc aggatcaggg cggcgtagaa gatcaccatc
     1141 cccatcacca ccgtgtagtc gcgctgcagg gcgctgatca cgaagaactt ccccaggccc
     1201 ggcaggttga agatcttctc caccaccagc gatccggtga tcagtccggc gcaggcgggg
     1261 cccaggtagc tgaccagcgg cagaagtgcg gccctcagcg cgtggtgggt gacgatccgg
     1321 ccctccggca ggcccttggc gcgcgcggtc cgcacatagt tggagtgcag cacctcgacc
     1381 atcccggccc gggtcagccg cgagatgatg gcgatctgcg gcagggccag caccgtcacc
     1441 ggcagcacca tgttgaccag cgccccaccg ttccacccgg cgctgggcag ccagccgagc
     1501 ttggaggcga aggccagcac cagcagcggc gcggtcacga aggtcgggat gcagaccccc
     1561 aggatcgcca cggtcatgac gccgtagtcc acggcccggt tctgccgcat cgccgccagc
     1621 actccgaggc tcaccccgat cagcgccgcc agcaggatcg ccgagccgcc gagcttcagg
     1681 gagaccagat agttctcctt gaggatctcc aggaccgact tgtccctgta cttcagcgat
     1741 ggccccagat cgccgtggac cacgccggcc aggtagctca ggtactgcgc gccaagcggc
     1801 cggttcatgc cgtaccgggc cagcacattc ttctcgatgg ccggcgacag cttgcggtcg
     1861 gtgtcgaagg gcccgcccgg cgccgcacgc atcatgaaga aggccagcgt gaccaccagg
     1921 aacaacgtcg ggatcgccac caataggcgt cggccgatga accggaacat ggccttgaac
     1981 gcgcctctcg ctgggggcca tttcgtgggt gctatttgga cggcacattg cgtaacttca
     2041 cccggtcccg tcaacgaagg gccgaccccg tttcgaaaga gcacgatgtc tgacttccgg
     2101 cgcgtcaccg acgacttcac caccgccccg cagatcagcg tcgctgatgt ggccgaggcc
     2161 gcccggcagg gcttcaccgc gatcatctgc aaccggcccg acggcgagga cccggggcaa
     2221 cccaccgtcg ccgagatcaa gggcgcggcc gaggccagcg gcctcaccta tacccacatc
     2281 ccggtgcgcg gcgcgccggg cccggccgag gtcgaggcca tgcgtcaggc ggtcgacgcg
     2341 gccagtggtc cggtgctcgc ctattgccgt tccggcaccc ggtcgatcac cacctgggcc
     2401 atcggtcagg ccatgtcggg cgcccgtgag cgtggcgagc tggtcagcct cggccgcgcc
     2461 gccggctacg acttgtcagg cgcgctcggc ggatgatccc ctacgtccgc gacatcacct
     2521 tcgactacgg cgcctgcgat caggtctccc cgctgattcg ccgcgtggtc gccaacaacc
     2581 cgggtccctt caccttcaag ggcaccggca cctacatcgt gggcaagggt gaggtcgcgg
     2641 tcatcgaccc cggccccgac gacccggcgc acctggccgc catcctggcc gcggtggccg
     2701 gcgagcgggt cagccacatc ctgatcaccc accaccattc cgaccactcc ccgctggccg
     2761 gtcccctgaa ggcgaccacc ggggcggtga tctacggctg cgccgtcgcc ggccacgagg
     2821 aagaggacac cggcgaggtc aagatggagg ccggccacga ccacgacttc cgccccgaca
     2881 tcagcctctg cggcggcggg gagatctcag gccccggctg gacgatgcaa gccatcccaa
     2941 ccccgggcca cacctccaac cacctctgct acgcgctgaa agaagagaac gcctgcttca
     3001 ccggcgacca catcatgggc tggtcgacca cggtgatcac gcctcccgac ggcgacatga
     3061 ccgactacct ggccagcctc gaggtcatca aggcgcgtaa tttcacgacg ctctggccga
     3121 cccacggccc gccgatcctt gaggtcacgc ccttcatcga cgcctacctc gcccaccgcc
     3181 aggagcgcat ggaccagatc ctgctggcgc tggccaacgg cccggcgtgc atcagggacc
     3241 tcgtgcccaa gctctaccgc gacgtcgatg agcgcctctg gcccgccgcc gcccgctcca
     3301 tgctggccgc catcatccac cttgaacgcg gcggcgacat cgaagccggc ggcccgccgg
     3361 ggcccgacac gatctatagg ctttcctgac acgacggcct tgctccggcc cgcgcaacag
     3421 cattgagatg ccgcaatcga acctggggcg ctgcaaatgt tcaaactcac cctgccgctc
     3481 gccgtcctgg cctgcgccgt cttgctggct ccgatggcga cggcggcccc ctcgccaacc
     3541 gtggtgaaga tcgaagccgg ccgcctccag ggcgcggcga gcgacggcgt cctggccttc
     3601 aagggcgtcc ccttcgccga gcagccggtg ggcgacctgc gctggcgtcc gccgcaaaag
     3661 gccaaaccgt ggaccggggt taagcccgcg ctgaagaacg gtcatgactg ccttcaggcg
     3721 gaggtgaagg gcgacccggg catgggaacc gatctgggcg aagactgtct ctatctcaac
     3781 gtctggcggc cggcgggagc ctcggccaaa aagttgccgg tgatggtctg gatttacggc
     3841 ggcggcctgg tcaacggcgg cacccagccg gcaatctacc agggcgataa cttcgcccgc
     3901 ggcggggttg tcttcgtcag tatcaactat cgcctcggcc ggttcggctt cttcgctcac
     3961 ccggcgctca cggcggaaca ccccgacgag atcaagggca actacggcta catggatcag
     4021 ctcgcggcgc ttaagtgggt tcagcgcaac atcgcggcct tcggcggcga tcccaagcag
     4081 gtcaccctgt tcggagaatc cgccggcggg ttctcggtcc acgtcctggt ggcctcgccc
     4141 atgggcaagg ggctcttcca gcgggccatc gtcgaaagcg gtggcggacg cacgaacgag
     4201 ggcgcggcgc ccagcatcgg cgcggcggag gccacgggca tggccttcgc caaggcgcag
     4261 gggatcgagg gcggcggcgc agcggtgctc gcaaggctgc gcgcgctgcc ggcggcgacg
     4321 gtcaccggca acctcaacat gttcacctcc aacgccaatg cggccaccta tcccggcccg
     4381 gtgaccgacg ggaagctggt ggtggagacg ccgcaagccg cctacctcgg ccgccggcag
     4441 gccaaggtcg ccctgatggt cggggccaat ggcgccgatc tcggcttcaa tacctccccg
     4501 actattgacg ccctgatggc gcccttcgga gtcgacaagg ccaaggcgct cacggcctac
     4561 gacccggacg ggaccggcgc cctcgccaga atccgcagca aggtgggcat ggaccagctg
     4621 atggaggagc cggcgcggtt cgatgcgcag accttcgccg cccaaggcct gccggcctgg
     4681 gagttccgtt tcgactatgt gggcgaggcc ctgaaggccc gctcgcccaa cggcgccgcc
     4741 cacgcctcgg aaatccccta cgtcttcgac aagtacgagg cgccctacat cgccatggtc
     4801 acgcccaacc acgccggcca gccaagcgcg gccgacaagg ctatggctgt gacgatccac
     4861 agctactggc tgaacttcgc caagaccggc gaccccaacg gcccgggcct gcccgcctgg
     4921 ccgcgctacg acccggccaa ggacaacctg atgctgttcc gcggcgacgg cgtggtcgcc
     4981 gcgaccgccg acccgctcaa aacccggctg gatctgacgg ccgcgacgca gagataggcc
     5041 tagagccccc gctccagcac cacgaagctg agatcgtcgc ggcggggccg cccgaagcgg
     5101 tcgtcgccgt acgggaaggg ccggatttcc ccggtcagcg catagccccg ccgctcgtac
     5161 caggcgatca gggtgtcgcg gacgttgatc acggtcagcc gcacgcgcgc cgcgccgcgg
     5221 tcccgggcga catcctccgc cgcggtcaac agggtgcggc cgagtttctg atcctgccga
     5281 tccggccgca cgctgagaag gccgagatac cagacgccgt cagcctgggg ttcgagccag
     5341 acatggccct gcagctcgcc cgtcgcatcg cgccagacca gcagatg
//
LOCUS       DATAJL010000868         5139 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87132,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000868 DATAJL010000000
VERSION     DATAJL010000868.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5139
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87132"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..467)
                     /locus_tag="VHN39_16495"
     CDS             complement(<1..467)
                     /locus_tag="VHN39_16495"
                     /inference="COORDINATES: protein motif:HMM:NF036807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HEX2817993.1"
                     /translation="MTISVIGAGFGRTGTMSLKTALDALGVGPCYHMVEVFKNPAAPG
                     WWIEAAEHPAKADWGKIFAGYNSTVDWPNATYYKELADAYPDAKVILTERDPDDWFDS
                     TQATIFMDRGPPDPAAMFPKMVKKVVFDLFDGRIHDREHAKAVFLAHNKMVSRT"
     gene            618..1673
                     /locus_tag="VHN39_16500"
     CDS             618..1673
                     /locus_tag="VHN39_16500"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEX2817994.1"
                     /translation="MARYDSILGTVGNTPVVRINRLAPPGVNLFVKVEAFNPLGSVKD
                     RLALGVIEAAEKSGALKPGQTVVEATSGNTGIGLAMVCAAKGYPLVVTMAESFSIERR
                     RLMRFLGAKVVLTPAALRATGMVAKTVELAETHGWFMTRQFENEANADMHSKTTAVEI
                     LDDFAGEQLDYWVTGYGTGGTLKGVARVLRDKSPKTKVVVCEPADAQLIASHEPQAFK
                     ADGSPAAGHPAWKPHPMQGWTPDFIGKLTNDAVEAHLIDQVLPITGPEAIKLSQELAL
                     KEGIFCGITSGATFAGALKIAADAPKGTNILAMLPDTGERYLSTPLFADVPSDMTEEE
                     VAIFRSTPMFTEPAPAT"
     gene            complement(1732..2016)
                     /locus_tag="VHN39_16505"
     CDS             complement(1732..2016)
                     /locus_tag="VHN39_16505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817995.1"
                     /translation="MADGASHRIFETWPAWPRLSQALAARSSLWAVCRCGREAAIAPR
                     PWVGQGLARQATAHLETRLRCLCGARRARLEIRGLAEAPQGATGGIYVFR"
     gene            2211..4376
                     /locus_tag="VHN39_16510"
     CDS             2211..4376
                     /locus_tag="VHN39_16510"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel family protein"
                     /protein_id="HEX2817996.1"
                     /translation="MRQVAGLVSLLALIAAAPALAEGAPPTKSRGPVTSVEEVVVTGQ
                     AAATQTLLDRKVYSITTDLQATAGSAADVLNNVPSVSVDADGNVSLRGDGNVTILVDG
                     KPSAQFTGPNKGLSLQQFSAGDIERVEVLTTPPAQYKAEGSGGVINIITKKTRKAGLS
                     GAAQFSLGDRRRYVAGFNAAYNSGPLKLSGGLGLRQDSRERLTTTNRVVVDPVSGADV
                     ASLQTIDEHQKRLTPSVKAGLDYDLNAQQSFGASFSHRELKGTRYFNQHDQDGLAGGG
                     VTSLSDRHDDGKDWSADTSEGLRFDQKLWRPHETLSLGLQHSADHEREKNAYRNSFAV
                     PISAPTFDELHLSHDLVKTEFSADYDLPLADMREVKLGYDLESDHNAFDPRGGTIDPV
                     TGQVVDNPNITNHFRYRQTVQAAYGQYETPLDGWQLQVGVRLEAAKAATLQITGDIPG
                     GRSDSGIYPSLHLDRAVGPDGKVSVGMSRRLTRPDPEILNPFADRQDTHNLRAGNPNL
                     APQDTWSYEAGYNVSARALTYGVTAYARFDRNAVTDIVRPVSDDVVLTTKANLPKSRS
                     AGLELTANGKLGQTLSYNLSGDLFAAQIDATALGVAGLKSTTGLNLKASLDWRPTHDD
                     TAQISFSRADRRLTPQGSIAPINLVNVGYKRQLRADLAMVATVSDLLKGQKLHRVVTT
                     PQLQDSYLRDQFGRIAYVGLVYTFGGQGKAKSDRFDYEP"
     gene            4434..>5139
                     /locus_tag="VHN39_16515"
     CDS             4434..>5139
                     /locus_tag="VHN39_16515"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2817997.1"
                     /translation="MLELRSVARTVEGEVHVAETSLVFASGSLNVLLGPTRSGKTSLL
                     RLIAGLDKPTAGQVWFDGLDVTGVEVRRRNLAMVYQQFVNYPTMSVYENIASPLRVAG
                     VATAEINRRVLEAAERLKLGPYLKRRPAELSGGQQQRTALARAIVKAAPLVLLDEPLA
                     NLDYKLREELREELPRLFADTGAILVYATTEPAEALLLGGSTATLCEGRVTQFGPTLS
                     VFREPRDLMTAQTFSDP"
BASE COUNT          875 a         1822 c         1685 g          757 t
ORIGIN      
        1 gtccgcgaga ccatcttgtt gtgcgccaga aacaccgcct tggcgtgttc gcggtcgtgg
       61 atgcggccgt cgaacagatc gaacaccacc ttcttgacca tcttggggaa catggccgcc
      121 gggtccggcg gcccgcggtc catgaagatc gtcgcctggg tagagtcgaa ccagtcgtcg
      181 ggatcgcgct cggtcaggat caccttggca tccggatagg cgtcggccag ctccttgtaa
      241 taggtggcgt tgggccaatc gacggtcgag ttgtagccgg cgaagatctt gccccagtcg
      301 gccttggccg ggtgctcggc ggcctcgatc caccagccgg gcgcggcggg gttcttgaac
      361 acctcgacca tgtggtagca gggcccgacg ccgagtgcgt cgagcgccgt tttcagggac
      421 atggtccccg tccggccgaa cccggccccg atcaccgata tggtcatgcg cccctccgcg
      481 tcacaggcgg cggaccttgg cctttgcggc gtggcgcctc aagcccccag aaaaggtccg
      541 ggcgaccgtg gttctgctga attgactcac gcagcggggc tgggcttttt gtttgcccgc
      601 cgacaaggag acggacgatg gccagatacg acagcatcct ggggaccgtg ggcaatacgc
      661 cggtggtccg gatcaaccgc ctggcgcctc cgggcgtgaa cctcttcgtc aaggtcgagg
      721 cgttcaaccc attgggctcg gtcaaggacc ggctggcgct gggcgtcatc gaggcggccg
      781 agaagtccgg cgcgctcaag cccggccaga ccgtcgtcga ggcgaccagc ggcaacaccg
      841 gcatcggcct ggccatggtc tgcgcggcca agggctatcc gctggtggtc accatggccg
      901 agagcttctc catcgagcgt cggcggttga tgcgcttcct gggcgccaag gtggtgctga
      961 ccccggccgc gctgcgcgcc accggcatgg tggccaagac tgtcgagctg gccgagaccc
     1021 acggctggtt catgacccgg cagttcgaga acgaagccaa cgccgacatg cattcgaaga
     1081 ccacggcggt ggagatcctc gatgatttcg ccggcgaaca gctggactat tgggtcaccg
     1141 gctacggcac cggcggcacg ctgaagggcg tcgcccgcgt actgcgcgac aagagcccca
     1201 agaccaaggt cgtggtctgc gagcccgccg acgcccaact gatcgccagc cacgagccgc
     1261 aggccttcaa ggccgacggc tcgccggccg ccggtcaccc ggcgtggaaa ccgcacccca
     1321 tgcaggggtg gacgccggac ttcatcggca agctgaccaa cgacgcggtg gaggcccatc
     1381 tgatcgacca ggtcctgccg atcaccggcc ccgaggcgat caagctcagc caggagctgg
     1441 cgctgaagga aggcatcttc tgcggcatca cctccggcgc caccttcgcc ggcgccctga
     1501 agatcgccgc cgacgcgccc aaggggacca acatcctggc catgctgccc gacaccggcg
     1561 agcggtacct gtcgaccccg ctgttcgccg acgtgccgtc cgacatgacc gaggaggagg
     1621 tggcgatctt ccgctcgacg ccgatgttca cggagccggc gcccgccacc tagcgtttcc
     1681 cggctgacga ggaacccgtc agccgatcag gaagagcgac aagcaaagac tctaacggaa
     1741 gacgtagatg ccgcccgtgg cgccctgcgg cgcctcggcg aggccgcgga tttccagccg
     1801 cgcccgccgc gctccgcaga ggcatcgcag gcgcgtctcc aggtgcgcgg tcgcctgacg
     1861 cgccagtccc tggccgaccc aggggcgggg ggcgatcgcc gcctcacgcc cgcagcggca
     1921 gacggcccac aggctggagc gcgccgccag cgcctggctg agcctgggcc acgccggcca
     1981 ggtctcgaag atccgatgcg atgcgccgtc cgccatgtct gttctccgtg cgaagaacaa
     2041 aagcagaact tatggagtcg cgcgagtccc ttccggctgt gcccgcggcg cgccgcaacc
     2101 gcgcggcgac tgaaggcgcg acattggcga tctccaacct tgacgccacc ccgcggcgag
     2161 gcgacctggc ctagggtgga gcctgggtcc gtaggcccgc tgggagcgat atgcgtcagg
     2221 tcgccggtct cgtttcgctg ctggcgctca tcgccgcggc gccggccctc gctgagggcg
     2281 cgcctcccac caagtctcgc ggcccggtca cctcggtcga ggaggtcgtc gtcaccggtc
     2341 aggccgcggc gacccagacc ctgctcgacc gcaaggtcta ttccatcacg accgacctgc
     2401 aggcgaccgc gggctcggcg gcggatgtgc tcaacaatgt accctcggtc tctgtcgacg
     2461 ccgacggcaa cgtcagcctg cgcggcgacg gcaacgtcac catcctggtg gacggcaagc
     2521 cgtcggcgca gttcacgggc ccgaacaagg gtctcagtct gcagcagttc tcggccggcg
     2581 acatcgagcg ggtggaagtg ctcaccaccc cgcccgcgca gtacaaggcc gagggctccg
     2641 gcggcgtcat caacatcatc accaagaaga cccgcaaggc cggcctttcg ggcgccgccc
     2701 agttcagcct cggcgaccgg cgccgttacg tggccggctt caatgcggcc tataattccg
     2761 ggccgttgaa gctctccggc ggccttggac tgcgccagga ttcccgcgag cgtctgacca
     2821 ccaccaaccg cgtggtcgtg gatcccgtct cgggcgccga cgtcgccagc ctgcagacca
     2881 tcgacgagca ccagaagcgc ctgaccccct cggtgaaggc cggcctcgac tacgacctga
     2941 acgcgcagca gtcgttcggc gcctcgttca gccatcgcga gctgaagggg acgcgctact
     3001 tcaaccagca cgatcaggac ggcctggcgg gcggcggcgt cacaagcctt tccgaccgac
     3061 acgacgacgg caaggactgg agcgccgaca ccagcgaggg cctgcggttc gaccagaagc
     3121 tctggcggcc gcacgagacg ctcagcctgg gcctgcagca cagcgccgac cacgagcgcg
     3181 agaagaacgc ctaccgcaac agcttcgccg tgccgatctc ggcgccgacc ttcgacgagc
     3241 tccacctcag ccacgacctg gtgaagacgg aattcagcgc cgactacgat ctgccgctgg
     3301 ccgacatgcg cgaggtcaag ctcggctacg atctcgagag cgaccacaac gccttcgatc
     3361 cgcggggcgg gacgatcgat cccgtcaccg gccaggtggt ggacaacccc aacatcacca
     3421 accatttccg ctatcgccag accgtgcagg cggcctacgg ccagtacgag accccgctcg
     3481 acggctggca attgcaggtc ggggtgaggc tggaagccgc caaggctgcg accttgcaga
     3541 tcaccggcga tatcccgggc ggccgcagcg attccgggat ctatccgagc ctccatctgg
     3601 accgggcggt cggaccggac ggcaaggttt cggtgggcat gagccgccgg ctaacccggc
     3661 ccgacccgga aatcctcaac cccttcgccg accgccagga cacccacaac cttcgggccg
     3721 gcaatccgaa cctcgcgccc caggacacct ggtcctacga ggccggctac aacgtctcgg
     3781 cccgcgccct cacctatggc gtaaccgcct acgcccggtt cgaccgcaac gccgtcaccg
     3841 acatcgtgcg gccggtcagc gacgacgtgg tcctgaccac caaggcgaac ctgccgaaga
     3901 gccgctcggc gggtctcgaa ctcaccgcca acggcaagct cggccagacg ctgtcctaca
     3961 atctcagtgg cgatcttttc gccgcccaga tcgacgccac ggccctgggc gttgcgggcc
     4021 tcaagtcgac caccggactg aacctgaagg ccagcctcga ctggcggccg acccacgacg
     4081 acaccgccca gatctcgttc agccgcgcgg accggcggct gacgccgcag ggctccatcg
     4141 cgccgatcaa cctcgtcaac gtcggctaca agcgtcagct ccgcgcggac ctagcgatgg
     4201 tcgccacggt cagcgacctc ttgaagggcc agaagctgca cagggtggtc acgacgcccc
     4261 agctccagga cagctacctg cgcgaccagt tcggccggat cgcctacgtg gggctggtct
     4321 acaccttcgg gggccagggc aaggccaagt cggacaggtt cgactacgaa ccctgacctg
     4381 cggatgcgcg cgcggcgatt gacggggtgg gccagctacc gcagcgtggg cgcatgctgg
     4441 agctgcggag cgtcgcgcgg actgtcgagg gcgaggtcca tgtggcggag acctcgctgg
     4501 tcttcgcatc cggttcgctg aacgtcctgt tgggccccac gcggtcgggc aagaccagcc
     4561 tgttgcggct gatcgccggc ctggacaagc cgacggcggg ccaggtctgg ttcgatggcc
     4621 tggacgtgac cggcgttgag gtccgcaggc gcaacctcgc catggtctac cagcagttcg
     4681 tcaactatcc gacgatgagc gtctacgaga acatcgcctc gccgctgcgc gtggctgggg
     4741 tcgccacggc cgagatcaac cggcgcgtcc tggaggctgc cgagcggctg aagctcggtc
     4801 cctatctgaa gcgaaggccc gcggagcttt ccggcggcca gcagcagcgc accgcgctgg
     4861 cccgcgccat cgtcaaagcc gcaccgctgg tcctgctcga cgagcccttg gccaacctcg
     4921 actacaagct tcgggaagag cttcgagagg agctgccgag gctcttcgcc gacaccgggg
     4981 cgatcctggt ctacgccacc accgagccgg ccgaggccct gctgctgggg ggctcgacgg
     5041 cgacgctttg cgagggccgg gtcacccagt tcgggccgac gctctcggtg ttccgggaac
     5101 cccgcgacct gatgactgcg cagacctttt ccgacccgc
//
LOCUS       DATAJL010000869         3226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_100119,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000869 DATAJL010000000
VERSION     DATAJL010000869.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100119"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            433..1476
                     /locus_tag="VHN39_16520"
     CDS             433..1476
                     /locus_tag="VHN39_16520"
                     /inference="COORDINATES: protein motif:HMM:NF024996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HEX2817998.1"
                     /translation="MTPFCKSAGGAILAALACGGAARAQDIGYHAGAVNIALHGAVSV
                     QEGFVDGTQKNFGAKDTNVDGYLRLIGDWTSSQGWLVGASLETSTRRTTQSLGSGEAY
                     VYFSSELGRVEIGRQYGAANSLAFHAPDIALGQVRGDFARYAGTQALLSPFDSVDSPK
                     IIYLSPPVNGLRFGASWAPRDSANLAASDPRDRTLQRDVSEFGAQYQRPVGDWVLGAS
                     TGYARGAADPSTGRRDIASWSVGLDARRGSLRLGAAYVDRADSNVFIRDFDQDEINAG
                     VAWVRDRWGLALSGSSSRGSNYFNRLAGVGGYYAVTEHLTLRTDLVSFDEHDGGLPRR
                     HGTTLVSEIEAHF"
     gene            complement(1487..2248)
                     /locus_tag="VHN39_16525"
     CDS             complement(1487..2248)
                     /locus_tag="VHN39_16525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2817999.1"
                     /translation="MITPEDLSAYLDGEAPDSKVRDIEAALQVDAGLRGKIDRMQAKD
                     REIKAAMDSLLERPVPDRLAEAVRASLAATGPQPQNDNVVALKPRLGWTSRALWPTAI
                     AAALVGGVMIGQVLPLRTPDAVEWTSDRSTGVPMAGKAIAAALSTATSGAHVTLAANR
                     TMTPVMTFASRDGSLCRQFELAEPAGRQNGLACRGDRAAWRLVALASTGVAASAGGYR
                     TASGAGEDAVSAMADRLIKGEPMDATAEAAALRSR"
     gene            complement(2245..2766)
                     /locus_tag="VHN39_16530"
     CDS             complement(2245..2766)
                     /locus_tag="VHN39_16530"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2818000.1"
                     /translation="MTGPTDLTDRIIALLPRLRRFALTLTRHPDDSDDLVQVSVERAL
                     SRLHRWNEGTRLDSWMFKIMQNLWIDELRSRRSRGQVDTDFDLEILAGSDGRDAMDLR
                     LTLQDTMAALMALPEEQRAVMLLVAVEGYSYRDAADVLDVPIGTVMSRISRARAALEQ
                     QGRAPFTVVGALS"
     gene            2968..>3226
                     /locus_tag="VHN39_16535"
     CDS             2968..>3226
                     /locus_tag="VHN39_16535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818001.1"
                     /translation="MTSLVMALGPQAIEAHAYQAFGLHAPKAARGGGLASLKGYVQFA
                     QSGSTSRGGGSSGGGSSSGGGGSGSGTTSGGSGSGTTSSGSG"
BASE COUNT          511 a         1142 c         1070 g          503 t
ORIGIN      
        1 gtcatcgtct tcgccgatga agcgggcgaa caccatgtcg aatccgccgt cctgctggtc
       61 ggcaagacac tggccgacat cgccgcctcc gacatcggct gatcctgggg gcgcgtccgt
      121 tcgcgggcgc gccttcccac ctgcaacccg cgaatttcag acttcgaact cagtcggacg
      181 ccgcggcgct gacggtgggc gcgtcccacc cgccacccgg cgcctggaag cgctcgtgat
      241 gcgccggcgg ctgaagttga cgggccgcca cgaccgggcc gttcgcaagg agcgacgccc
      301 gggcgcgccg cggccgggtg tcgcgcccgc gaccatgaca agcgaaaata tcaacacttc
      361 gactactcca accgtgcaca acacgcgatg gccgcgcctc cgccgaggcc gagttgaatc
      421 aaagggatgg ggatgacgcc gttctgcaag tccgccggcg gtgcgattct cgcggccctg
      481 gcctgtggcg gagcggctcg cgcccaggac atcggctacc atgccggcgc cgtgaacatt
      541 gctcttcacg gagccgtctc cgtccaggaa ggcttcgtgg atgggacgca gaagaacttc
      601 ggggccaagg acaccaatgt cgatggctac ctgcggctga tcggcgactg gacctcctcg
      661 cagggctggc tggttggcgc gagcctcgag acctccaccc gccgcacgac ccagtccctg
      721 ggttcgggcg aagcctatgt ctatttcagc tccgagctgg gccgggtcga gatcggccgc
      781 cagtacggcg cggccaacag cctggccttc catgcccccg acattgcgct cggccaggtt
      841 cgtggcgact tcgcgcgcta cgccgggacc caggccctgc tctcgccgtt cgactccgtg
      901 gattcgccca agatcatcta cctgtcgccg ccggtgaacg gcctccggtt cggcgcctcg
      961 tgggcgccgc gcgacagcgc gaacctcgca gcgtccgacc cgcgcgaccg cacgctgcaa
     1021 cgcgacgtca gcgaattcgg cgcgcagtac cagcgccctg tcggcgactg ggtcctgggc
     1081 gccagcacgg gctatgcgcg cggcgccgcc gacccgagca ccgggcgacg cgatatcgcc
     1141 tcctggagcg tcggcctcga tgcgcgccgc ggttcgctcc ggctaggcgc ggcctatgtc
     1201 gaccgcgccg acagcaacgt cttcatccgc gacttcgacc aggacgagat caacgccggc
     1261 gtcgcctggg tcagggaccg ttggggcctt gcgctctccg gctcgtccag ccggggcagc
     1321 aactatttca accgactggc gggcgtcggc ggctactacg ccgtcaccga gcacctgacc
     1381 ttgcgaaccg acctggtgtc gttcgacgag catgacggcg gattgccgcg ccgtcacggg
     1441 acgacgctgg tcagcgagat cgaggcccac ttctagccgg accgcctcag cggctccgca
     1501 aggccgcggc ctcggcggtc gcgtccatgg gctcgccctt gatcagccgg tccgccatgg
     1561 ccgagacggc gtcttcaccg gctcccgacg ctgtcctgta gccaccagcc gaagccgcaa
     1621 cccccgtcga agccagggcg accaggcgcc aggctgcgcg atccccgcgg caggccaggc
     1681 cgttttgccg cccggcgggt tcggccagct cgaactggcg gcagagactg ccgtcacggc
     1741 tcgcgaaggt catgaccggg gtcatcgtcc gattggccgc gagggtgaca tgggccccgc
     1801 tggtggccgt tgagagcgcc gcggcgatcg ccttgccggc catcgggacg ccggtgctgc
     1861 gatcagaggt ccattcgacg gcatcgggcg tgcggagcgg caagacctga ccgatcatta
     1921 cgccgcccac gagggccgcg gcgatagccg tcggccacag ggcgcggctg gtccagccga
     1981 ggcgcggctt cagcgcgacc acattgtcgt tctgcggttg cgggcccgtg gccgccagcg
     2041 aggcgcggac cgcttcggcc agacggtccg ggacgggtcg ctccagcagg ctgtccatcg
     2101 ccgccttgat ctcgcggtcc ttggcctgca tccggtcgat cttgccgcgc aggccggcat
     2161 cgacctgcag ggccgcctcg atatcccgaa ctttcgagtc cggagcttcg ccgtccagat
     2221 aggcgctgag atcttccggg gtgatcatga cagcgccccg acgacggtga agggcgcacg
     2281 gccctgctgt tccagggcgg cgcgcgcccg cgaaatgcga ctcatcaccg ttccgatcgg
     2341 cacatccagc acatcggcgg cgtcgcgata ggagtaccct tcgaccgcca ccagcagcat
     2401 gaccgcgcgc tgctcctcgg gcagggccat gagcgccgcc atcgtgtcct gcagcgtcag
     2461 gcgcaggtcc atcgcgtctc ggccatcgga ccccgccagg atctcaaggt cgaaatcggt
     2521 gtcgacctgg ccgcggctgc ggcgcgatcg aagttcgtct atccagaggt tctgcatgat
     2581 cttgaacatc cagctgtcaa gccgagtccc ttcgttccat cggtgaagcc gcgacaacgc
     2641 acgctccacc gaaacttgga caagatcgtc gctatcgtcg gggtgccggg tgagcgtcag
     2701 ggcgaaccga cgcagccgag gcagcagagc gataatcctg tccgtaagat cggtggggcc
     2761 ggtcactggg gcattacctc ggacaacgtg acgcaatcca acatattccc cgaccgcgct
     2821 actttgagga aaatcaagct agatgggaat aagcgcccat acagtacgta gtcctaacag
     2881 aagagcgaaa gggtccgggc tcacatgtcg caggccgcag tcaccaggcg ggcgacctcc
     2941 cggccccgcc ggtggacgtt ctgcgccgtg accagtctgg tcatggcgct cggtccccag
     3001 gcgatcgagg cccacgccta tcaagccttt ggcctgcacg cccccaaggc cgcccgcggc
     3061 ggcggcctcg cttcgcttaa gggctacgtg cagttcgccc agtccggatc gaccagccgc
     3121 gggggcggtt ccagcggtgg cggctccagt agcggcggtg gcgggtcggg ctccggcaca
     3181 acgtccggcg gctccggctc tggaacgaca tcgagcggat ccggca
//
LOCUS       DATAJL010000870         3892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_100120,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000870 DATAJL010000000
VERSION     DATAJL010000870.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3892
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100120"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1590)
                     /locus_tag="VHN39_16540"
     CDS             complement(<1..1590)
                     /locus_tag="VHN39_16540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516817.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2818002.1"
                     /translation="MREKTSPAKAAKAKTSKSAKSKGNAAAKTNGKAKAKAQPPLAQP
                     PPAPAGPSVTPPSFAGPNMDLGAMTADQRAVVEKLSMNLARAALTAQGAIAEMALRQA
                     DRPAALSPDPFHVAPALTEVMGRLAAQPDRLMRAQADLFSQYLELWQSAAKRMSGEAT
                     EPVATPARGDKRFADPDWAENPVFDVIKQSYLLTSNWMNGLVADVTDVEPMTKRRVEF
                     FMKMLTDAFSPSNFLASNPAALREVMATGGESLVKGMENFAADLERGGGQLSIAQTDY
                     EMFKIGENVATAPGKVVFRNEIIELLQFSPATESVCEIPLVIFPPWINKFYILDLRPE
                     NSMIRWLSAQGITVFVASWVNPTAELSDRTFEDYMREGIYAGTQAAMDQCGTDQVNTV
                     GYCIGGTLLSSTLAHMAAKNDKRIASATFFAAQQDFSEAGDLLLFTNEDWLADFEKKM
                     DEGGGVLSGQTMADTFNALRSNDLIWSFFVNNYLMGKEPRPFDLLFWNADQTRMPKTL
                     HLFYLRKFYGENALAKGELVLD"
     gene            1690..2124
                     /locus_tag="VHN39_16545"
     CDS             1690..2124
                     /locus_tag="VHN39_16545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818003.1"
                     /translation="MNVRRTHPALRLMAGVGACAVLSGCVGNPFEDAKVDPRSPIAAE
                     VAKSVHAEAAYPTFKSIPPVPKDVRPHRQYGQQAAQVEKEGKTLGAETSDSTWTLNNS
                     EAFAARARADAGPELPPVEPGDTEAFARDQKARATPPPPPPR"
     gene            2250..3470
                     /locus_tag="VHN39_16550"
     CDS             2250..3470
                     /locus_tag="VHN39_16550"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEX2818004.1"
                     /translation="MTPDFHRIRRLPPYVLEEVNRIKARLRAQGTDIIDFGMGNPDMP
                     TPKHIVDKLIETARDPKAGRYSASKGIVGLRRAMAGYYDRRFGVKLNPDTEVIATLGS
                     KEGFANLAQALTAPGDVIVCPNPAYPIHAYGFIMAGGVIRHVPALSPEDYLAGVSRAV
                     KHSAPPPTVLILSYPSNPTAQCVDLDFYKDAIALAKKHDMLVISDIAYSEIYFDNNPP
                     PSVLEVEGAKDIAVEVNSLSKTYAMAGWRVGMVVGNERICAALARVKSYLDYGAYTPI
                     QVAAAAALNGPQDCVDEIRAIYKSRRDVLVESMKRAGWDIPSPNASMFAWAPVPEQFK
                     EAGSLLFSKLLIEEAGVAVAPGVGFGEYGEGFVRVGLVENENRIRQAARNVKKFLSQA
                     DEILARSHNTLAAQ"
     gene            3467..>3892
                     /locus_tag="VHN39_16555"
     CDS             3467..>3892
                     /locus_tag="VHN39_16555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEX2818005.1"
                     /translation="MSDKRTWRVGVAGLGTVGAGLLTFLAEHPDFAPAGGRAAVTGVS
                     ARSRSRPRPFDIAGLPWFDDPVTLATSPETDVFVELIGGSDGPAKAAVEAALKAGKPV
                     VTANKALIAEHGAELAVLAEARGVPLLFEAAVMGGVPAVK"
BASE COUNT          633 a         1281 c         1319 g          659 t
ORIGIN      
        1 gtccagcacc agctcgccct tggccagggc gttctcgcca tagaatttgc gcagatagaa
       61 gaggtgcagc gtcttcggca tccgggtctg gtcggcgttc cagaagagga gatcgaacgg
      121 ccgcggctcc ttgcccatca ggtagttgtt gacgaagaag ctccagatca ggtcgttgga
      181 gcgcagggcg ttgaaggtgt cggccatggt ctggccggag agcacgccgc cgccctcgtc
      241 catctttttc tcgaaatcgg ccagccagtc ctcgttggtg aagagcagca ggtctccggc
      301 ctccgagaag tcctgctggg cggcgaagaa ggtggccgag gcgatccgct tgtcgttctt
      361 ggccgccatg tgggccagcg tcgaggagag cagggtgccg ccgatgcagt agccgacggt
      421 gttcacctga tctgtgccgc actggtccat ggcggcttgc gtgccggcat agatcccttc
      481 gcgcatatag tcctcgaagg tgcggtcgga gagctcggcg gtggggttca cccaggaggc
      541 tacgaagacg gtgatgccct gggcggagag ccagcggatc atcgagttct cggggcgcag
      601 gtcgaggata tagaacttgt tgatccaggg cgggaagatc accagcggga tctcgcagac
      661 gctctccgtc gcgggagaaa actgcagcag ctcgatgatt tcgttgcgga acacgacctt
      721 gccgggcgcg gtcgccacgt tctcgccgat cttgaacatc tcgtagtcgg tctgggcgat
      781 cgacagttgg ccgccaccgc gttccaggtc cgcggcgaag ttttccatgc ccttgaccag
      841 gctctcgccg ccggtcgcca tgacctcgcg cagcgccgcg gggttggagg ccaggaagtt
      901 ggacggcgag aaggcgtcgg tgagcatctt catgaagaac tcgacccggc gcttcgtcat
      961 gggctcgacg tcggtcacat cggccaccag gccgttcatc cagttggagg tgagcagata
     1021 ggattgcttg atcacgtcaa agaccgggtt ctcggcccag tcgggatcgg cgaatcgctt
     1081 gtcgccgcgg gccggcgtcg ccacgggttc ggtcgcctcg ccgctcatgc gcttggcggc
     1141 ggactgccag agttcgaggt attgcgagaa gaggtcagcc tgggcgcgca tcagccggtc
     1201 gggctgggcg gccagccggc ccatcacctc ggtcagcgcc ggcgccacgt ggaaggggtc
     1261 gggcgacagg gccgcgggcc ggtcggcctg gcgcagcgcc atttccgcga tcgcgccctg
     1321 ggcggtcagc gcggcgcgcg cgaggttcat ggagagcttt tcgacgaccg cgcgctggtc
     1381 ggcggtcatg gcgcctaaat ccatgttcgg ccctgcgaag ctgggcggcg tgacgctcgg
     1441 gccagccgga gcgggcggcg gctgggccag gggcggttgc gccttcgcct tggctttgcc
     1501 gttggttttc gccgcggcgt tgcccttgct tttggccgac ttggaggttt ttgccttggc
     1561 ggccttggcc ggcgaggttt tctcgcgcat cggttgttcc tctcgaggcg aaaacgcgcg
     1621 cgccctttcg ccgatctcga tcatcgcata agaccggacc ggaaaatgca cactcggtcg
     1681 agccttttcg tgaacgtccg acggacccat ccggctttga ggctgatggc aggtgtcggc
     1741 gcgtgtgcgg tgttgtcggg ctgcgtcggc aatccgttcg aggacgccaa ggtcgatcca
     1801 cgctcgccga tcgccgcgga ggtggccaag agcgtccacg ccgaggccgc ctatccgacc
     1861 ttcaagtcga tcccgccggt ccccaaggac gtgcgtccgc atcggcaata cggacagcag
     1921 gccgcccagg tcgagaaaga gggaaagacg ctcggggcgg agacctctga cagcacctgg
     1981 acgctgaaca actccgaggc cttcgccgca agggcccgcg ccgacgccgg tccggagctg
     2041 ccgccggtgg agcccggcga caccgaggcc ttcgcccgcg accagaaggc gcgagctacg
     2101 ccgcctccgc cgcctccgag ataggggcct gcggaggcag aaaattcatc gaaccatggc
     2161 ttggctggct cccgcccgga gactaccaag acccgacctc cgcatttcga aaagccgcat
     2221 ctgggccccc gcggcgcaag acctttcata tgacccccga ttttcaccgc ataagacgcc
     2281 tcccgcccta cgtcctcgag gaggtcaacc gcatcaaggc gcgcttgcgc gcccagggta
     2341 cggacatcat cgatttcggc atgggcaacc ccgacatgcc gacgccgaag catatcgtcg
     2401 ataagctgat cgagaccgcc cgcgacccca aggccgggcg ctattcggcc tccaagggca
     2461 tcgtcggcct ccgccgggcg atggccggct actacgaccg ccgcttcggc gtgaagctga
     2521 acccagacac cgaggtgatc gccacgctgg gctccaagga ggggttcgcc aacctcgccc
     2581 aagcgctcac cgcacccggc gatgtgatcg tctgcccgaa cccggcctat ccgatccacg
     2641 cctacggctt catcatggcc ggcggggtga tccgccacgt gccggcgctc tcacccgagg
     2701 actatctggc gggcgtcagc cgggcggtga aacactccgc tccgccgccg accgtgctga
     2761 tcctcagcta tccgtccaac ccgacggccc agtgcgtcga cctcgatttc tacaaggacg
     2821 ccatcgcgct ggcaaagaag cacgacatgc tggtgatttc cgacatcgcc tattcggaga
     2881 tctacttcga caacaatccg ccgccctcgg tgctcgaggt ggagggcgcg aaggacatcg
     2941 ccgtcgaggt caattcactc tccaagactt acgccatggc cggctggcgg gtcggcatgg
     3001 tggtgggcaa tgagcgaatc tgcgcggcgc tggctcgggt gaaatcctac ctcgactatg
     3061 gcgcctacac cccgatccag gtggccgcgg ccgcagcgct caacggcccg caggactgcg
     3121 tcgacgagat ccgggcgatc tacaaatccc gccgcgacgt gctggtggag tccatgaaac
     3181 gggccggctg ggacatcccg tcgcccaacg cctcgatgtt cgcctgggcc cccgtgcccg
     3241 agcaattcaa ggaggcgggc agcctcttgt tctccaagct gctgatcgaa gaggcggggg
     3301 tggcggtcgc gcccggcgtg ggcttcggag aatatggcga gggcttcgtc cgcgtggggc
     3361 tggtggagaa cgaaaaccgc atccgtcagg cggcgcgcaa cgtgaagaag ttcctcagcc
     3421 aggccgacga aatcctggcc cgcagccaca acaccctggc cgcccaatga gcgacaaacg
     3481 cacctggcgc gtcggcgtcg ccggcctggg gacggtgggc gcgggcctgc tgaccttcct
     3541 cgccgagcat ccggatttcg ccccggccgg cggccgcgcc gccgtcaccg gcgtctcggc
     3601 gcggtcccgc tcgcggcctc ggccgttcga tatcgcgggc ctgccctggt tcgacgatcc
     3661 ggtgacgctg gcgacctcgc cggagaccga cgtcttcgtg gagctgatcg gcggctcgga
     3721 cggtccggcc aaggccgcgg tcgaggccgc gctcaaggcc ggcaagcccg tggtcaccgc
     3781 caacaaggcg ctgatcgccg agcatggcgc cgaactcgcg gtcctggcgg aggccagggg
     3841 cgttccgttg ctctttgagg ccgccgtcat gggcggcgtg ccggcggtga ag
//
LOCUS       DATAJL010000871         2726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87272,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000871 DATAJL010000000
VERSION     DATAJL010000871.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87272"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1566)
                     /locus_tag="VHN39_16560"
     CDS             complement(<1..1566)
                     /locus_tag="VHN39_16560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004623967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEX2818006.1"
                     /translation="MMLRIGGRARGWLAALAVLAATPAFPAPAHHHDVHIRRDTWGVP
                     HIAAATDVDAAYGLGFAQAEDDMVTLQLAVVTARGRLAELQGPSGVDSDYLVALQDVW
                     GTIGRRYDKDVDPKVRAVLEAYAQGVNAYARRHPKDIAPGLLPITGKDLSASFIYTGP
                     TFYGLDGVFRDTMRPTAKMTAALDDRIPTGSNGLAVAPVRSADGATRLLVNSHQPYTG
                     PLAWYEAVIETRQGWHVAGGFFPGTPFMLHGHNAHLGWANTVNHPDLVDVYALTINPA
                     DPDQYRLDGAWKTLEKRTVQIKVKRPGGGFDVVDREVLRSAHGPAMRTDHGTFAIRYA
                     GMDEVRQPEEYFALNKAQNLTQWKAALAMGLLPSINYVYADEKGNIGYVYNGRFPVRK
                     EGVDWSGVVPGDRSDLIWTAQLPFEKVPQLWNPKSGLVFNSNNTPFRASDPADDLKPA
                     DFSKTLGIQTDMTNRAYRVLETYGVDHSITAEAFNDYKYDLVFSAKSDVAKGLTALMS
                     IPAGSDADLAAAQA"
     gene            1670..2404
                     /locus_tag="VHN39_16565"
     CDS             1670..2404
                     /locus_tag="VHN39_16565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HEX2818007.1"
                     /translation="MTYCLGILLPRGLVLASDSRSNAGVDQVVRVSKLNLMPAAKDRV
                     IAIQSSGNLATTQAVVTKLHEGYGSGDAALDLTLARTMFEVAGIVGAQLRGNIAADAK
                     FVDPYGDPSGNFLVSGQIAGQPPRLFQIYAAGNFVEATPRSPFLQIGETKYGKPILDR
                     SLTPQHPLDEAAKLALLSFDATIRSNLSVGLPIDLLAYRADSFTANLVTIEEDDPYWN
                     AMRQAYSQGLSALVAGLPDPPAAWGV"
     gene            complement(2422..>2726)
                     /locus_tag="VHN39_16570"
     CDS             complement(2422..>2726)
                     /locus_tag="VHN39_16570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818008.1"
                     /translation="YSLDSTWTPSLQLFHTSGSNDPAFFDTGSGRPNSDGYVVELAYV
                     PWGKPGSPVSWANARFTAQYVGYSKFDGARRGASENNTLYLSARFALAPFGAYVAR"
BASE COUNT          416 a          933 c          930 g          447 t
ORIGIN      
        1 cgcctgagcc gccgccaggt cggcgtcgga gccggccggg atcgacatca gcgcggtcag
       61 gcccttggcc acgtcggact tggcgctgaa gaccaggtcg tacttgtagt cattgaacgc
      121 ttcggcggtg atcgaatgat ccacgccata ggtctccagg acccggtagg cgcggttggt
      181 catgtcggtc tggatgccca gcgtcttgga gaagtcggcg ggcttcaggt cgtcggccgg
      241 gtcgctggcg cggaagggcg tgttgttgga attgaacacc aggcccgact tcggattcca
      301 cagctgcggg accttttcga agggaagctg cgcggtccag atcaggtcgg agcggtcgcc
      361 gggcacgacg ccggaccagt cgacgccctc tttccgcacc gggaaacggc cgttgtagac
      421 gtagccgatg ttacccttct cgtcggcgta gacgtagttg atcgacggca ggaggcccat
      481 ggccagggcg gccttccatt gcgtcaggtt ttgcgccttg ttcagcgcga agtactcctc
      541 gggctggcgc acctcgtcca tgccggcgta gcggatggcg aaggtcccgt ggtcggtgcg
      601 catggccggg ccgtgggccg aacgcagcac ctcgcggtca accacgtcga agcctccgcc
      661 gggccgcttg accttgatct ggacggtgcg tttttccagc gtcttccagg cgccgtcgag
      721 cctgtactgg tcggggtccg ccggattgat cgtcagcgca tagacgtcga ccaggtccgg
      781 gtggttgacg gtgttggccc agcccaggtg ggcgttgtgg ccgtgcagca tgaaaggcgt
      841 gccggggaag aaaccgccgg ccacgtgcca gccctggcgt gtctcgatca ccgcctcgta
      901 ccaggcgagc gggccggtgt agggctggtg cgaattgacc agcagccgcg tcgccccgtc
      961 cgccgaacgc accggcgcca ccgccaggcc gttcgagccc gtcgggatcc tgtcgtcgag
     1021 cgcggcggtc attttcgcgg tcgggcgcat cgtgtcgcgg aacacgccgt cgaggccgta
     1081 gaaggtcggg ccggtgtaga tgaagctcgc cgacaggtcc ttgccggtga tcggcaacag
     1141 gcccggcgcg atgtccttgg gatggcgtcg ggcataggcg tttacgccct gcgcataggc
     1201 ctccaggacg gcgcgaacct tgggatccac gtccttgtca taacgccgcc cgatcgtgcc
     1261 ccagacgtcc tgcagggcca ccagatagtc gctgtcgacg cccgacggcc cctgcagttc
     1321 cgcgagccgt ccgcgggccg tgaccaccgc cagctgcagg gtgaccatgt cgtcctcggc
     1381 ctgggcgaag ccgaggccat aggcggcgtc cacgtcggtc gccgcggcga tgtgcggcac
     1441 gccccaggtg tcgcggcgga tgtgaacgtc gtggtgatgg gccggcgcgg ggaacgccgg
     1501 tgtcgccgcc agcaccgcca acgccgcgag ccagccgcgg gcgcgaccgc cgatcctgag
     1561 catcatgggg cgttcctctt tccccggatg atcgccgagc gtcaccattg gcgcaatgcg
     1621 ctaacgcgac agcccttctc gcaaggatac gagcggccta ggttggcgga tgacctattg
     1681 cctcggaatc ctgctgccgc ggggcctggt gctggcctcc gactcccggt ccaacgccgg
     1741 cgtcgaccag gtggtccgcg tttccaagct gaacctgatg ccggccgcca aggaccgggt
     1801 gatcgccatc cagtcctccg gcaacctcgc caccacccag gccgtggtca cgaagctgca
     1861 cgaaggctac ggctcgggcg acgcggccct ggacctgacc ctggcgcgga caatgttcga
     1921 ggtcgctgga atcgtcggcg cgcagctgcg cggcaacatc gccgccgacg caaagttcgt
     1981 ggacccctat ggcgacccga gcggcaactt cctggtgagc ggccagatcg ccggccaacc
     2041 accccggctc ttccagatct acgcggccgg caacttcgtc gaggccactc cccgctcgcc
     2101 cttcctgcag atcggcgaga ccaagtacgg caagccgatc ctcgaccggt cgctgacccc
     2161 gcagcacccg ctcgacgagg ccgcgaaact ggccttgctc tcgttcgacg ccaccatccg
     2221 cagcaacctc tccgtcggcc tgcccatcga cctcctggcc tatcgcgccg acagcttcac
     2281 ggcgaacctc gtcaccatcg aggaagacga cccctactgg aacgccatgc gccaggccta
     2341 cagccagggc ctctcggccc ttgtggcggg cctgcccgac ccgccggcgg cctggggggt
     2401 ctgacggggc gtcgcgccgg ctcagcgcgc cacgtaggcc ccgaacggcg ccagggcgaa
     2461 gcgggcgctg aggtagaggg tgttgttctc cgaggcgccc cggcgcgcgc cgtcgaactt
     2521 cgaatagccg acgtactgcg ccgtgaaccg ggcgttcgcc cagctgaccg gcgatcccgg
     2581 cttgccccac ggcacatagg ccagttcgac cacatagccg tcggaattcg gccggccgct
     2641 gccggtgtcg aagaaggccg gatcgttgga gcccgaggtg tggaacagct gcaagctggg
     2701 cgtccaggtg ctgtccaggc tgtagg
//
LOCUS       DATAJL010000872         2008 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_123661,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000872 DATAJL010000000
VERSION     DATAJL010000872.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123661"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1393)
                     /locus_tag="VHN39_16575"
     CDS             complement(<1..1393)
                     /locus_tag="VHN39_16575"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2818009.1"
                     /translation="MDERLAAAQAALNAGRGAEAIEPLIELLQAEPNQSTPVYRALMV
                     QLYRADRLEDGVVWGKAATQRYPRDVELLNLLGVVYRRLFRYPEALAALDQAAKLNPK
                     NTSVQSNRGNVLLDLEDGVRAEAVFSKLARAEPRNAEYGRQLGRALLKQGRTDAGMSR
                     LRAAVALDKTLVNAWMDMIGVENLAQRTSEANALVDKALAANPDNPRLLESRAVILRR
                     AQQLRAAEAYLTELLPRFETAAWLQFQLAATVADFDRDRANVHFRRAVELEPGNLDYL
                     LALIESLERTRSGDEGANIEESYQLALGALALKPTNPGHLKVLNEVLIRVCAFDLMPE
                     LGDFRSLGRSWAKTNRHTGLLKQLAQVRTLDDRYELLEQHRIWARLVEAEAAKRPIRK
                     SPPRPADGKIRLGFMSSDLRAHPVGYFALPLFEHLDPRFEIYCYSFYQGEAADRMQEF
                     FASKSTAYRWRPDL"
     gene            complement(1644..1901)
                     /locus_tag="VHN39_16580"
     CDS             complement(1644..1901)
                     /locus_tag="VHN39_16580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET transporter"
                     /protein_id="HEX2818010.1"
                     /translation="MANVVGTVAALCSMTSFAPQIVKIWRDRDASEISLSMYLVTVTG
                     FCLWSGYGILIGSWPVTVSNIVCLLMSGAVLALKWRFRRPS"
BASE COUNT          333 a          646 c          685 g          344 t
ORIGIN      
        1 tgaggtccgg cctccagcgg taggcggtcg acttcgacgc aaagaactcc tgcatccggt
       61 cggcggcctc gccttggtag aacgagtagc agtagatctc gaaccgtggg tcgaggtgct
      121 cgaagagcgg aagggcgaaa tagcccaccg gatgggcgcg caggtcggac gacatgaaac
      181 ccaggcggat ctttccgtct gcgggccgtg gcggggactt gcggatgggg cgcttggcgg
      241 cctcggcctc gaccagccgc gcccagatgc gatgctgctc caggagctcg tagcggtcgt
      301 ccagcgtcct gacctgggcg agttgcttga gcagcccggt gtggcggttg gtcttggccc
      361 agctcctccc cagcgaacgg aagtccccaa gctccggcat caggtcgaag gcgcagaccc
      421 ggatcaggac ctcgttgagc accttcaggt ggccggggtt ggtgggtttg agggccaagg
      481 ccccaagggc gagctggtag gactcttcga tattggcgcc ctcgtcgccg ctgcgggtcc
      541 gctcgagact ctcgatcagc gccagcagat agtcgaggtt cccgggctcc agttccacgg
      601 ccctgcgaaa gtgcacattg gcccggtcgc gatcaaagtc ggcgaccgtc gcggccagct
      661 ggaactgcag ccaggcggcg gtttcgaagc gcggcaggag ctcggtcaga taggcctcgg
      721 cggcgcgcag ctgctgggcg cggcgcagga tgaccgcgcg ggactccagc agcctcggat
      781 tgtccgggtt cgccgccagg gccttgtcga ccagggcgtt ggcttctgac gtcctctgcg
      841 ccaggttttc cacgccgatc atgtccatcc aggcgttgac cagggtcttg tccaaggcga
      901 ccgccgcgcg caaccggctc atgcccgcgt cggtccggcc ctgcttgagg agcgcgcggc
      961 cgagttggcg gccgtattcg gcgttgcgtg gctcggcgcg ggccagcttg gagaagaccg
     1021 cttcggcgcg cacgccgtct tccagatcca gaaggacatt gccgcggttc gactgcacgg
     1081 aggtgttctt ggggttgagc ttggccgcct ggtcgagggc ggccagcgcc tcggggtagc
     1141 ggaacagccg gcggtagacc acgccgagca gattcagcag ttccacatcg cgtgggtagc
     1201 gctgcgtggc ggccttgccc cagacgacgc cgtcctccag gcgatcggcg cgatagagct
     1261 gcaccatcaa ggcgcgatag accggtgtcg actggttggg ttcggcctgg aggagttcga
     1321 tcagcggctc gatcgcctcg gccccccggc ctgcattcag cgccgcctgc gccgcggcca
     1381 aacgctcgtc catgcttcca ctcaaatctg gcggcgccgc tctagtgtcc cgattccgaa
     1441 gttcacaaac gcttgcggcg agcgccggac gaacttcgaa atcggtacgg acactagcaa
     1501 ggctatgttt ctagtgtgct tcttcggatt tgaagttcgc tcagcgcttg gccctgacca
     1561 aggcgaactt caaatccagc acactagcgg cgaaacgggc aaagccttaa ggccgcccgc
     1621 tcggcgtggc tagagcggcc tgctcagctg ggccgcctga accgccattt cagcgccagg
     1681 accgcgccgg acatcagcag gcagacgatg ttggacaccg tcaccggcca gcttccgatc
     1741 aggattccgt agccgctcca caggcaaaag cccgtcacgg tcaccaggta cattgagagc
     1801 gagatttccg aggcgtcgcg gtcgcgccag atcttgacga tctgcggcgc gaaactggtc
     1861 atggagcaca gcgccgccac cgtgcccacg acattggcga tgatcacctt gagcccgcgg
     1921 cggcgcccat aggcgccgtc agcgtcaccc gcgtgccggg gtgggcctgg gcgatctgca
     1981 gatcggcgtg caactgccgg cagagcag
//
LOCUS       DATAJL010000873         5440 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87302,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000873 DATAJL010000000
VERSION     DATAJL010000873.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5440)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5440)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5440
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87302"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..857)
                     /locus_tag="VHN39_16585"
     CDS             complement(<1..857)
                     /locus_tag="VHN39_16585"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEX2818011.1"
                     /translation="MLKLLRRGVPGLETLTASSSWRPPQDALWLDLLSPTREEELAVE
                     AALGLELPTREEMAEIELSSRLYQAHGATFMTATLLARRDGEGRTDAPVTFVLAKGLL
                     ITIRYAELRAFDLFAERAHSLEVASSSSCLFNLLDAVVERLADLLEHTGETVEGVSTA
                     IFSRPKGAQFEALLTDLARAQSLTSMTRNSLVSLARLFSFAALAPEIAADPECQAHLK
                     TLQRDAQSLTEHAGFQSSHIAFLLDAALGLINIEQNGIIKFFSVAAVILMPPTLVASV
                     YGMNFKNMP"
     gene            complement(922..1593)
                     /locus_tag="VHN39_16590"
     CDS             complement(922..1593)
                     /locus_tag="VHN39_16590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA];
                     GO_function: GO:0042834 - peptidoglycan binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HEX2818012.1"
                     /translation="MLKRTRTLLGSLAVAAVMSLVPTVGGALADTYWQCVPFARLISG
                     IQIFGDAYTWWQQAIGKYDVGFQPKAGAVLCFKPTERMRLGHVAVVSDVLTDRIVQIT
                     HANWSPIEGSRGKVEKDVTLVDVSPEGNWSQVKVWYDPSRDLGGSTYQTYGFIYQDTK
                     AKVIAASGLVGAENTAIAMAQNAANHMASAVRPGSGPLSMLSQAADSTDRIAALIAKA
                     ASGGN"
     gene            2102..2902
                     /locus_tag="VHN39_16595"
     CDS             2102..2902
                     /locus_tag="VHN39_16595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004619199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEX2818013.1"
                     /translation="MSGLAGLVASPEAWIALLTLIVMEVVLGVDNLVFVSILSNRLPE
                     ARRASARRIGIGLALVLRLVLLSAIAFIVSLTKPVLVLPFAVPSLADGHPMVDLSFSW
                     RDLILLAGGLFLVWKATSEIHHTMDPHETGDLFDKKGRAVLGFGAAIVQILALDVVFS
                     IDSILTAVGMTEHLPIMMAAVIVAVGLMLVASGPLARFIHSNPSVVMLALGFLLMIGA
                     TLIADAFGVHVPKGYIYAAMAFSGVVEGLNMASRKRRMPKPGAGRTLH"
     gene            2957..3337
                     /locus_tag="VHN39_16600"
     CDS             2957..3337
                     /locus_tag="VHN39_16600"
                     /inference="COORDINATES: protein motif:HMM:NF014968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AprI/Inh family metalloprotease inhibitor"
                     /protein_id="HEX2818014.1"
                     /translation="MRASLIAVGLAGAALFAGASFAVAEDNEAGVPLTPAEAAGVWTV
                     ASQGQDLCVLTLGAEHTVKAPRSCNDALPGSPTSWQPTKDGMQLIGANGQAVIAFHRW
                     SNSLFVSRRSSGVDIQLRRGGRGG"
     gene            complement(3334..5082)
                     /locus_tag="VHN39_16605"
     CDS             complement(3334..5082)
                     /locus_tag="VHN39_16605"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2818015.1"
                     /translation="MPTSAVRAQLMRILSSSGFTRAPRLRRFLAYVVDEALAGRFEQL
                     KEYSLGVDVFDRGTQFDPRADPIVRVDARRLRKAIADYYAGEGVGDAVEISLPTGGYF
                     PVFRLRTGSAGRPARPGARLAVARFEAQDGDEMTGGFAEGLTDELLLALNARDELRVV
                     AAPGPARDGDDLTALARQLQADMVLSGKVRREGGVMRVRATLTSAADGAQVWGDRYDA
                     ALDDIGAVLALQDELARRIAGLVAPRLQAPWRGRTRPPTRDMEAYELYLRGRHQLNAT
                     RPDSLVEALSLLEAACVRDPTFAEALAGLAEAHFVSAIFLLAPPMEAWAASRRFAQAA
                     LAIDPDLPAAHVALARVSATLDHDFPVAQASFDRALLADPLSAQARQARAFWLLAPLG
                     RLDEALAELANLLEQDPYSLGLRFDYARVLAFQHRFEDAIRHLELILEFQPDFPGAVF
                     ALAFAWERAGRIDLARAAHERHVRQLPYPLVTRWFDLACAAWDGAPDRARSIAEEMEA
                     QATPVAATVMADAWLRVGESDRAVDWLERAATERLYRTIYLSVDPDYDPLRADARFSR
                     LLRRVGLSEAARVPGT"
     gene            5212..>5440
                     /locus_tag="VHN39_16610"
     CDS             5212..>5440
                     /locus_tag="VHN39_16610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818016.1"
                     /translation="MKSLANFAAVLAAAAVLAPAAAHAGANLLTNGGFETGDFTGWHE
                     SDASNLTSVKLGDYNGVGPSQGQYQAVLGAVG"
BASE COUNT          877 a         1796 c         1901 g          866 t
ORIGIN      
        1 tccggcatgt tcttgaagtt catgccgtag accgaggcca ccagcgtcgg cggcatcagg
       61 atcaccgcgg ccaccgagaa gaacttgatg atgccgttct gctcgatgtt gatcaggccc
      121 agcgccgcat ccagcaggaa ggcgatgtgg ctggactgga atccggcgtg ctcggtgagc
      181 gactgggcgt cgcgctgcag ggtcttcagg tgcgcctggc actcggggtc ggcggcgatc
      241 tccggcgcca gcgccgcgaa gctgaacagg cgggccagac tgaccaggct gttgcgggtc
      301 atggaggtga gcgactgggc ccgggcgagg tcggtgagca gggcctcgaa ctgcgcgccc
      361 ttgggccggc tgaagatcgc cgtggagacg ccttcgacgg tctcgccggt gtgctccagg
      421 aggtcggcca gtcgctcgac caccgcatcg aggaggttga acaggcacga ggagctcgag
      481 gcgacctcaa ggctgtgggc ccgttcggcg aacaggtcga aggcccgcaa ctcggcgtag
      541 cggatggtga tcaggagacc tttggcgagc acgaaagtca ccggcgcatc ggtgcgcccc
      601 tcgccgtcgc gccgcgccag cagggttgcg gtcatgaacg tcgcgccgtg ggcctgatag
      661 agccggctgg agagctcgat ctcggccatc tcctcgcggg tggggagttc caggccgagc
      721 gccgcctcga cggccagctc ctcctcgcgg gtggggctga gcaggtcgag ccacagggcg
      781 tcctgcggcg gtcgccagct ggaagatgct gtcagggtct cgaggccggg aaccccacgt
      841 cgaaggagtt tgagcatgag gcctccgcaa gcgaccgctc ctagtggagc ggctcgcgcg
      901 gggcgtcaat tcgcttcggc tttagttgcc gccgctggcg gccttggcga tcagggccgc
      961 gatgcggtcg gtggaatcgg ccgcctggct cagcatcgag agcgggccgg agcctggccg
     1021 cacagccgag gccatgtggt tggccgcgtt ctgggccatg gcgatggcgg tgttctccgc
     1081 gccgacgagg ccggacgcgg cgatgacctt ggccttggtg tcctgataga tgaagccgta
     1141 ggtctggtag gtcgagcctc ccaggtcgcg gctggggtcg taccagacct tcacctggct
     1201 ccagttgccc tcgggcgaga cgtcgaccag ggtcacgtcc ttctcgacct taccgcgcga
     1261 gccctcgatg ggggaccagt tggcgtgggt gatctggacg atgcggtcgg tgagcacgtc
     1321 actgaccacc gcgacgtggc ccaggcgcat gcgctcggtc ggcttgaagc agagcaccgc
     1381 gccggccttg ggctggaagc ccacgtcata cttgccgatg gcctgctgcc accaggtgta
     1441 ggcgtcaccg aaaatctgga tgccggagat caggcgcgcg aagggaacgc actgccaata
     1501 ggtgtccgcg agcgcgcccc caacggtggg aacgaggctc ataaccgccg cgacggcaag
     1561 ggaacccaga agggtcctcg tccgtttaag catgtttttt gaactccccg agcgaactgc
     1621 gcatgagata accctatctc gtgttgagtg aaaagagggt ttagatgcgg gcgtcagatc
     1681 gccgcgcccc gtctatcgcg agatataaca gggtatgcgg ctgaataact tcgaatgacg
     1741 agagttgaca agaaaaaacc gacaatcaat tcgcgcgttt caagatatca atcccaccct
     1801 cggcgtctta gcggcctctg attatctatt actgcctcgc ttatggtctt gccgttgcca
     1861 tatggttccg cagcacgact tcagatcacg cgcctgtaac gtaatgaaac aagagctcgc
     1921 gccgccaggc aaggtcttcg cgtgtggggc gaatttttga gccggcgggt tcacaagttt
     1981 gcgacttagg cgcctgggcc gccaatcgcc gcgaaatcgg gcgtttgggc cgatattcgc
     2041 gggtctggcc gacgctccga tgcggtagaa ggcgcgagcc gtcggcgagg gggagcacca
     2101 gatgagtgga cttgcggggc tggtcgccag cccggaggcc tggatcgcgc tgctgacgct
     2161 gatcgtcatg gaagtggtgc tgggcgtcga caacctggtc ttcgtctcga tcctgtccaa
     2221 caggctgccg gaagcccgcc gcgcgtctgc caggcggatc ggcatcggcc tggcgctggt
     2281 cctgcggctg gtcctgctgt cggccatcgc cttcatcgtc agcctgacca agcccgtcct
     2341 ggtgctgccg ttcgcggtcc cctcactggc cgacggccac ccgatggtcg acctgtcgtt
     2401 ttcctggcgc gacctgatcc tgctggccgg cggcctgttc ctggtctgga aggccaccag
     2461 cgagatccac cacaccatgg atccgcacga gacgggggac ctgttcgaca agaagggccg
     2521 cgcggtcctg gggttcgggg cggcgatcgt gcagatcctg gccctggacg tggtgttctc
     2581 catcgactcg attctgacgg cggtggggat gaccgagcac ctgccgatca tgatggccgc
     2641 ggtgattgtg gcggtgggcc tgatgctggt ggcctccggg ccactcgccc gcttcatcca
     2701 ctcaaatccg agcgtggtga tgcttgcgct cgggttcctg ctgatgatcg gggcgaccct
     2761 gatcgccgac gccttcgggg tgcacgtgcc caagggctac atctacgccg ccatggcctt
     2821 ttccggcgtg gtcgagggcc tgaacatggc ctcacgcaaa cggcgcatgc caaagcccgg
     2881 cgcgggccgg accctgcact gaaggcaacc gccgcgccaa agcggcgttc ctttccgcga
     2941 agacttggag aacgccatga gagcctcttt gatcgccgtg ggcctggccg gcgccgcgct
     3001 gttcgccggc gcgtccttcg ccgttgctga agacaatgag gccggcgtcc cgctgacccc
     3061 ggccgaggcg gcgggggtgt ggaccgtggc ttcgcagggc caggacctct gcgtcctgac
     3121 cctgggcgcc gagcatacgg tgaaggcgcc gaggagctgc aacgacgcct tgccgggcag
     3181 tccgaccagt tggcagccca ccaaggacgg catgcagctg atcggggcca acggccaggc
     3241 ggtgatcgct ttccaccgct ggagcaacag cctctttgtc tcgcgccgct ccagcggcgt
     3301 ggatatccag ctgcggcgcg gcggacgcgg aggctaggtc cccgggacgc gggccgcctc
     3361 ggatagcccc accctccgca gaagacggct gaagcgagcg tcggcgcgca ggggatcgta
     3421 gtcgggatcg accgacagat agatcgtgcg atagagccgc tcggtcgcgg cgcgctccag
     3481 ccaatccaca gcgcggtcgg attctcccac ccgcagccag gcatcggcca tcaccgtggc
     3541 ggcgacagga gtcgcctgcg cctccatctc ctcggcgatc gatcgcgcgc ggtcaggcgc
     3601 gccgtcccag gcggcgcaag ccaggtcgaa ccagcgcgtc accagtggat atggcagctg
     3661 gcggacgtgg cgttcgtgcg cggcgcgagc caggtcgatc cggccggcgc gctcccaggc
     3721 aaaggcgagc gcgaacaccg caccggggaa atccggctga aactccagga tcagctccag
     3781 gtggcgaatg gcgtcttcga agcgatgctg aaaggccagc accctggcgt agtcgaacct
     3841 cagacccagc gaatagggat cctgctccag gagattggcg agttcggcca gggcttcgtc
     3901 gagccggccc agcggcgcca gcagccagaa cgcccgggcc tggcgcgcct gggccgacag
     3961 cgggtcggca agcagggcgc ggtcgaagct cgcctgcgcc acgggaaaat cgtggtcgag
     4021 cgtggcgctg acgcgggcca gcgccacatg cgccgccggc aggtcggggt cgatggccag
     4081 ggcggcctgg gcgaatcggc gcgacgcggc ccaggcctcc atcggcgggg cgagcaggaa
     4141 gatggcgctg acgaagtggg cctccgccag gcccgccagc gcctcggcga acgtggggtc
     4201 gcggacgcag gcggcctcca gtagagacag cgcctcgacc aggctgtccg gccgggtggc
     4261 gttgagctgg tgacggccgc gcagatagag ctcgtaggcc tccatgtccc gagtgggcgg
     4321 ccgcgtgcga ccccgccagg gcgcttgcag tcgcggcgcg acgaggcccg cgatccgccg
     4381 cgccagctcg tcctgcaagg ccagcaccgc gccgatgtca tccagcgcgg cgtcataacg
     4441 atcgccccag acctgggcgc cgtcggcggc ggatgtcagg gtcgcgcgca cccgcatgac
     4501 gccgccctcg cgccgcacct tgccgctcag caccatgtcc gcctgcagtt gccgggcgag
     4561 cgccgtcagg tcgtcgccat cgcgcgcggg gcccggcgcc gcgacgaccc tgagttcgtc
     4621 acgcgcattg agcgccagca ggagttcgtc ggtcagccct tcggcgaaac cgcccgtcat
     4681 ctcgtcgccg tcctgggcct cgaaccgggc gaccgccaag cgggcgccgg ggcgcgccgg
     4741 gcgaccggcc gacccggtcc gcaagcggaa cacgggaaaa taaccgcctg tgggcaggct
     4801 gatttccacg gcgtcgccga cgccctcgcc ggcgtagtaa tcggcgatgg ccttgcgcag
     4861 ccggcgcgca tcgacccgca caatggggtc ggcgcggggg tcgaactgcg tcccgcggtc
     4921 gaacacatcg acgccgaggc tgtattcctt gagctgctcg aaacgccccg ccagcgcctc
     4981 gtcgaccaca taggccagga accggcgcag ccgcggcgcg cgggtgaaac cggagctcga
     5041 caggatccgc atgagttggg cgcggaccgc cgaggtcggc acgccgccat cctgccctga
     5101 tgctccaagc tcgtgacgca tcgttcgccc gcagattacc cccgcattac tgccgtcatg
     5161 cgcggcacgc ccgcaagttg cgcttcgcaa ttcgtgacgt ggagccgaca gatgaaatcc
     5221 ctagccaact tcgccgcggt cctggccgcg gccgccgtcc tggcgcccgc cgcggcccac
     5281 gcgggggcca atctgttgac caatggcggc ttcgagaccg gcgacttcac cggctggcac
     5341 gagtccgacg ccagcaacct cacctctgtg aagctcggcg actacaacgg tgtcggcccc
     5401 agccagggcc aatatcaggc cgtgctcgga gccgtcgggt
//
LOCUS       DATAJL010000874         2400 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87308,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000874 DATAJL010000000
VERSION     DATAJL010000874.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2400)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2400)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2400
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87308"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            35..487
                     /locus_tag="VHN39_16615"
     CDS             35..487
                     /locus_tag="VHN39_16615"
                     /inference="COORDINATES: protein motif:HMM:NF023696.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3617 family protein"
                     /protein_id="HEX2818017.1"
                     /translation="MNRLLPLLAAPLLSALAAASPAAAQNAISPGYWETTSKSTSPLP
                     ASKTERRCIKPQDVAKFMEGKINHIYTCTYPKKEVGGGKIHLEGTCSTRDGPPVPISG
                     QGTFTSDTLHIDARASILFGGLSVPIKASTDAKRLGDACPAPDAAPAG"
     gene            complement(497..976)
                     /gene="ssb"
                     /locus_tag="VHN39_16620"
     CDS             complement(497..976)
                     /gene="ssb"
                     /locus_tag="VHN39_16620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEX2818018.1"
                     /translation="MAGSVNKVILIGNLGADPEIRSLTSGDRVANLRIATSETWRDRG
                     SGERKEKTEWHRVVVFNENIVKVCEQYLRKGAKVYVEGAIQTRKWQDQSGVEKFSTEI
                     VLQKFRGELTMLDGRGDNAEAGEGGGYNGGFSSGPRAQPASAPREDFSADLDDEIPF"
     gene            complement(1123..1515)
                     /locus_tag="VHN39_16625"
     CDS             complement(1123..1515)
                     /locus_tag="VHN39_16625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818019.1"
                     /translation="MQRLAFTAVALLITSASLSACAQRTEPPGDPGVCYNVVPQKGGK
                     LKYFKLVNTPSLETCAANLEAMRLKFLRMGGTQQEIYGAFQANFLFLQAEGVLTSTSL
                     EGPRYVALVRTGDGRLAIPGAMPTAPTQ"
     gene            complement(1555..2238)
                     /locus_tag="VHN39_16630"
     CDS             complement(1555..2238)
                     /locus_tag="VHN39_16630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818020.1"
                     /translation="MDFLKDRRIVLVLTGAAVALLAGLAIAWTLVAQHRGETTGPPPA
                     SRAGLVIDSAGAADAHADSTQPLRCFVAGQFVGEMTLAACAKRNGVSTDALDVGLDPS
                     GALAAADQAGAMITPLPPADSKVEEATPVEAAPVTVLPQVVSGPSAVCLSYAAGQWRR
                     LPNEMALSACAQALFAGRCEHAGEAAYGRWGQQTLRLVASGRVETSADNRNFRPLMDQ
                     PGCPAAPAG"
BASE COUNT          386 a          838 c          796 g          380 t
ORIGIN      
        1 caagtccgcc gcaatcccgt ggcaaggtct gacaatgaac cgactgctcc ccctgctcgc
       61 cgctccgctc ctgtccgccc tggccgccgc cagcccggcc gccgcccaga acgccatcag
      121 cccgggctac tgggagacca ccagcaagag cacctccccg cttccggcca gcaagaccga
      181 gcgccgctgc atcaagccgc aggacgtcgc caagttcatg gaaggcaaga tcaaccacat
      241 ctacacctgc acctatccca agaaggaggt cggtggcggc aagatccatc tggagggaac
      301 ctgttcgacc cgcgacggtc cccccgtccc gatctcgggc caggggacct tcaccagcga
      361 caccttgcac atcgacgcgc gggcctcgat cctgttcggc ggcctctcgg tcccgatcaa
      421 ggccagcacc gacgccaagc gcctgggcga cgcatgccct gcgcccgacg ccgcgcctgc
      481 gggctagagc cgccctctag aacggaattt cgtcgtccag atcggcggag aagtcttcgc
      541 ggggcgcaga ggccggctgg gcgcgcgggc ctgacgagaa gccaccgtta tagccgccgc
      601 cctcgcccgc ctcggcgttg tcgccgcggc cgtccagcat ggtcagttcg ccgcggaact
      661 tctgtagcac gatctcggtg gagaacttct ccacgccgga ctggtcctgc cacttgcggg
      721 tctggatcgc gccctcgaca tagaccttgg cgcccttgcg caggtactgc tcgcagacct
      781 tcacgatgtt ctcgttgaac accaccacgc ggtgccactc ggtcttctcc ttgcgctcgc
      841 cggagccgcg gtcgcgccag gtttcggatg tcgcgatgcg caggttagcc acccgatcgc
      901 ctgaggtgag cgaccggatt tcggggtcag ccccgaggtt gccgatcagg atgaccttgt
      961 tgacgctgcc cgccatgtcc aagcttccgt agctacgggc ctttgaggcc ccattccgca
     1021 aaattgcgac gccacgctag cgggccatca ccggttgagc aaggactttg ttctctattc
     1081 gttcacgttt gaagggaacc gtccacaggc tttcgcgcgt cgctactggg tcggcgcggt
     1141 cggcatggct cccgggatgg ccaggcgacc gtcgcccgtg cgcaccaggg ccacatagcg
     1201 cggtccctca aggctggtgg aggtcagcac cccctcggcc tgcaggaaca ggaaattggc
     1261 ctggaaggcg ccgtagatct cctgctgggt gccgcccatg cgcaggaatt tcagccgcat
     1321 ggcttctaaa ttcgcggcgc aggtttccag gctaggcgtg ttgacaagct tgaagtattt
     1381 cagcttgccg cccttctgcg gaacgacgtt gtagcagacc cccggatcgc ccggcggctc
     1441 ggtgcgctgg gcgcaggctg agagcgaggc gctggtgatc aaaagggcga cggcggtgaa
     1501 ggcgaggcgt tgcatggcca aatcctacac aagtaatttc cgatgcgcga gccgtcagcc
     1561 agccggcgcc gcgggacagc ccggctgatc catcagtggc cggaaattgc gattgtcggc
     1621 ggaagtctcc acccggccgg acgccaccag tcgcagggtc tgctggcccc agcgcccgta
     1681 ggccgcctcg cctgcgtgct cgcaacgccc ggcgaacagc gcctgggcgc aggcgctcaa
     1741 ggccatctcg ttcggcagcc ggcgccactg gccggcggcg tagctcaggc agaccgctga
     1801 gggcccgctc accacctgcg gcagaacggt cacgggcgcg gcctccactg gcgtcgcctc
     1861 ctcgacctta ctgtcggcgg gcggcagcgg ggtgatcatg gcgccggcct ggtccgcggc
     1921 ggcgagcgct ccgctgggat ccagcccaac gtcgagggcg tcggtggaaa ccccgttgcg
     1981 cttggcgcag gccgcgagcg tcatctcgcc gacgaactgg ccggccacga agcaccgcag
     2041 cggctgggtg gaatccgcgt gcgcatcggc ggcgcctgcg gaatcgatca ccaggccggc
     2101 gcgagacgcc ggcggcggcc ccgtggtctc gccgcggtgc tgggccacca gggtccaggc
     2161 gatcgccaga ccggccaaga gcgcgacggc ggcgccggtc agcaccagca cgatccggcg
     2221 atccttcagg aaatccatgg ctctggctag accccgccgg cgcctgtttc aaggcgtccc
     2281 ggaccagggc gggtcagaag cgtcaggcga cggtgctgac gctgaagggg ttcgagctgg
     2341 tgctgccgcc ggtaaggcgg gcgagcccgg cctggaggtt ggcgagctcc gcggtaaggt
//
LOCUS       DATAJL010000875         1564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87420,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000875 DATAJL010000000
VERSION     DATAJL010000875.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1564
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87420"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..1257)
                     /locus_tag="VHN39_16635"
     CDS             complement(202..1257)
                     /locus_tag="VHN39_16635"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF014698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051213 - dioxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TauD/TfdA family dioxygenase"
                     /protein_id="HEX2818021.1"
                     /translation="MTMQAPPAVIEGPAAWRSADLAPSEWLHVLRAAEIAEVEQAARA
                     LAARDMDLAAVTAADFPLPTLALRLSALLASDVLGGRGFTVIRGLDPTALTRRENAAA
                     FLGLGVHLGALRPQNAAGHILGHVKDLGRSGADPTARLYQTHERQTYHTDSCDVVGLL
                     CLTPARAGGRSSLVSSVALHNEMRRLRPDLALTLFQPIETDRRGEAAPGQEPWFNIPV
                     FTWHAGQFAGMYQRQYIESARRFPQVPPLTAAQVEALDLLDALAENPTFHLELEFLPG
                     DIQLVNNHILFHDRTAFEDWPEPDRRRHLLRLWLAPKGAQPLPPVFAERFGSITPGDR
                     GGVSAPRDQWQAPLDAA"
BASE COUNT          225 a          483 c          615 g          241 t
ORIGIN      
        1 ctccgccgcc acggcctgat ccacgcccgc cagggtccgt aacaataggc gccgccggtc
       61 tcgcgaccgg cggcgctttt cgtgggtgcg gtcaggtcag ccgccgagcc cggctctcgg
      121 cgccggtctg gcgcgtgacg aggccggtca cctcgccatg acgttattta ataaattcaa
      181 caatttaatt gagtcttcag cctaggccgc gtccagcggg gcctgccact gatcgcgagg
      241 cgcggagacg ccgcctctgt cgccgggggt gatagagccg aagcgttcgg cgaagacggg
      301 cggcaggggc tgggcgccct tgggcgcgag ccagaggcgc aggaggtggc ggcggcggtc
      361 gggttcgggc cagtcctcga aggcggtgcg gtcgtggaac aggatgtggt tgttcaccag
      421 ctgaatgtcg ccggggagga actccagctc caggtggaac gtggggtttt cggcgagcgc
      481 gtcgaggagg tcgagggcct cgacctgggc ggcggtgagc ggcgggacct gcgggaaacg
      541 gcgggcgctt tcgatgtact ggcgctggta catgccggcg aactggcccg catgccaggt
      601 gaagacgggg atgttgaacc agggctcctg gccgggcgca gcctcgcccc ggcggtcggt
      661 ctcgatgggc tggaacaggg tgagcgcgag gtcggggcgc aggcgccgca tctcgttgtg
      721 gagggcgact gaactcacca ggctggagcg gccgccggcc ctggcgggcg tgaggcacag
      781 gaggccgacc acgtcgcagg aatcggtgtg ataggtctgc cgctcgtggg tctggtagag
      841 gcgcgcggtg gggtcggcgc cggagcggcc gagatccttc acatggccca ggatgtggcc
      901 ggcggcgttc tgggggcgga gcgcgccgag atggacgccc agacccagga aagcggcggc
      961 gttctcccgg cgggtcaggg cggtgggatc gaggccgcgg atcaccgtaa agccgcgccc
     1021 gcccaggacg tctgaggcca gcagggcgct gagacgcagg gccagcgtcg gcaggggaaa
     1081 gtcggcggca gtgacagcgg caaggtccat gtcgcgcgcg gcgagggcgc gggcggcctg
     1141 ttcgacttcg gcgatctcgg cggccctcag gacatgcagc cattcgctgg gcgccaggtc
     1201 ggcggagcgc caggcggcgg ggccctcgat cacggcgggc ggcgcttgca tcgtcatccc
     1261 tatggtcccc cggcgcgcct cggcgtcatg tccgcattcg acctatatcg ggcagtccgc
     1321 gtcccttgtc gcgccccgcc gatcggcgcc taatcgccgt tgccggacgc cggtatctcg
     1381 aacggagcga gcccatgtgc aattcggatc gacgccattt cctggcgatg tcgcttgtta
     1441 ctgttggagc ggtctgtatc ggcggcgcgg cgctggccgc ggagaccccg ccgaagaaga
     1501 aggtctatgt ctgcccgccc tgcggctgcg cggcggatgg caaggagttc cccgagccgg
     1561 ggac
//
LOCUS       DATAJL010000876         2894 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_73733,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000876 DATAJL010000000
VERSION     DATAJL010000876.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2894)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2894)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2894
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73733"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..991)
                     /locus_tag="VHN39_16640"
     CDS             complement(158..991)
                     /locus_tag="VHN39_16640"
                     /inference="COORDINATES: protein motif:HMM:NF024545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX2818022.1"
                     /translation="MSIFRRIAREPLAHFLLIGALLFGGLTVVKSLRRPVVRLEAQDL
                     NQLASYWEIQMQRPPNKVELAGIIRDRIDEELLAREALRLGLDKDDMIIRRRLAQKMS
                     FATDDVTEMKEPSDADLRAYYARTADHYAAPARVAFQQVFFSGDRPHGGAAKAAAQAL
                     ERAEEGGRADPTGDPFLFPLAYDDVSLQDLLRDYGTAFVKELETAPIGTWAGPVLSPY
                     GWHIVKVTARHAPPSTAFESVRSQVRDAWLADRRAEANAAFLRDLRKRYRVVVAGVPE
                     D"
     gene            complement(1017..>2894)
                     /locus_tag="VHN39_16645"
     CDS             complement(1017..>2894)
                     /locus_tag="VHN39_16645"
                     /inference="COORDINATES: protein motif:HMM:NF023649.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3604 domain-containing protein"
                     /protein_id="HEX2818023.1"
                     /translation="VLGAAGAAPGQAPKPAAAPPASKAAPAKAAAHLPGYNPDRNAYF
                     GDLHVHTGLSFDAYIFNVRATPDDAYSFAKGGTIGHASGFNIRNSGGPLDFTAVTDHS
                     EYMGAMREANDPKNPLNKLPIVQGLFSPDPKKIGEAFAKMVDGYEHGTLPKGFSAPDI
                     AGRAWTEVQQAAARHNDPGRFTTFVAYEYTSAPEGRNLHRNVIFRTTKVPELPYTALV
                     SNDPETLWKTMDAWRAKGIDVLAIPHNSNGSDGLMFEPTRRNGSPMDKAYAELRMRNE
                     PLVEITQIKGTSETHPSLSPNDEWGNFEIMERYIGTNRPVTHFHGSYVREALKDGILM
                     RETKGFNPFKMGFIGSSDTHNAAPGSVEERNYFSKVGRSDGTPVQRGSVPPGGAKTWP
                     ADTPDSAHATTPYQAWGASGLAGVWAEENSREAIFAALRRKETFATSGPRIRLRFFAS
                     YDYPDDLAHRTNLVREAYAKGVPMGGDLRPSAGKAPTFLIWGVRDPNSGYLQRAQIVK
                     GWVENGVAKEQVFDVACSDKLALNKTTWRCPDNGAGVNLATCEPDRFKGDVELRTLWT
                     DPTFKPRQRAFYYLRVLENPSCRWSTWDALRNGTPPNPTLAKTIMERAWSSPIWYEPK
                     A"
BASE COUNT          416 a          869 c         1096 g          513 t
ORIGIN      
        1 gggtcttgtc gacgagcgtg cgccagtccg cctcggtggc gggcggaaag tcgtgggcga
       61 gagtggtcac gtccaggagc gcgtcggggg ccatggcggg aaatggtccc gcatcgcccc
      121 tggcgtcaag ttcacgcggg gtgagttcgg gagtgggtca atcctccggc acgcccgcca
      181 cgacgacccg atagcgtttt cgaagatcgc gcaggaatgc ggcgttggcc tcggcgcggc
      241 gatcggcgag ccaggcgtcg cgcacctggc tgcggacgga ctcaaaggcg gtcgagggtg
      301 gcgcgtggcg ggcggtgacc ttgacgatgt gccagccgta gggggagagc accggcccgg
      361 cccaggtccc gatgggcgcg gtctccagtt ccttgacgaa ggcggttccg tagtcgcgca
      421 gcaggtcctg caggctgacg tcgtcataag cgagcgggaa gaggaacggg tcgccggtcg
      481 gatcagcgcg accgccttcc tccgcgcgct ccagcgcctg ggcggccgcc ttggccgcgc
      541 cgccgtgcgg tcggtcgccg gagaagaaca cctgctggaa ggccacgcgg gccggggcgg
      601 cgtagtggtc ggcggttctg gcgtagtagg cgcgcaggtc cgcgtcgctc ggctctttca
      661 tctcggtcac gtcgtcggtg gcgaaggaca tcttctgcgc caggcggcga cggatgatca
      721 tgtcgtcctt gtcgaggccg aggcggagcg cctcgcgggc caggagctcc tcgtcgatgc
      781 ggtcgcggat gatgccggcc agctccactt tgttgggcgg ccgctgcatc tggatttccc
      841 agtaggacgc gagctggttg aggtcctggg cttcgaggcg gaccacgggg cggcgcagcg
      901 acttgaccac ggtcaggccg ccgaacagca gggcgccgat cagcaggaaa tgcgccagcg
      961 gctcgcgggc gatccgtcgg aagatactca ttacaccacg cgtcggagcc gcagcttcag
     1021 gccttgggtt cataccagat cggcgaggac caggcccgct ccatgatggt cttggcgagc
     1081 gtcgggtttg gcggcgtgcc gttgcgcagc gcgtcccagg tcgaccagcg gcaggacggg
     1141 ttctcgagca cgcgcaggta gtagaaggcg cgctgcctgg gcttgaaggt ggggtcggtc
     1201 cacagcgtcc tgagttccac gtcgcctttg aatcggtccg gctcgcaggt ggcgaggttc
     1261 acgcccgcgc cattgtccgg gcagcgccag gtggtcttgt tgagcgccag cttgtcggag
     1321 caggcgacgt cgaacacctg ttccttggcg acgccgttct cgacccagcc cttcacgatc
     1381 tgggcgcgct gcagatagcc ggaattgggg tcgcgaaccc cccagatcag gaacgtcggc
     1441 gccttacccg cagacggtct cagatcgccg cccatgggca cgcccttggc gtaggcttca
     1501 cgcaccaggt tggtccggtg agcgaggtcg tccgggtagt cgtagctggc gaagaagcgc
     1561 aggcggatgc gcggccccga ggtggcgaag gtctccttgc ggcgcagcgc cgcgaagatc
     1621 gcctcgcggg aattctcctc ggcccagaca ccggcgagcc cggaggcgcc ccaggcctga
     1681 tagggcgtgg tggcgtgggc ggaatccggg gtgtcggcgg gccaggtctt ggcgccgccg
     1741 gggggcacgg agccccgctg gaccggcgtc ccgtcggagc ggccgacctt ggagaagtag
     1801 ttgcgctcct ccaccgatcc cggtgcggcg ttgtgggtgt cgctggagcc gatgaagccc
     1861 atcttgaacg ggttgaaacc cttggtttcg cgcatcagga tcccgtcttt cagggcctcg
     1921 cgcacatagc tgccgtggaa gtgggtcacc ggcctgttgg tgccgatgta gcgctccatg
     1981 atctcgaaat taccccactc gtcattgggt gagagcgagg ggtgggtctc cgaggtgccc
     2041 ttgatctggg tgatctcgac cagcggctcg ttgcgcatgc gcagttccgc ataggccttg
     2101 tccatgggcg agccgttgcg cctggtgggc tcgaacatca gcccatcgga gccgttcgag
     2161 ttgtggggga tggccagcac gtcaatgccc ttggcgcgcc aggcgtccat ggtcttccac
     2221 agggtctccg gatcgttgga gaccagcgcg gtgtagggca gttccgggac cttggtggtg
     2281 cggaagatca cattgcggtg caggttccgg ccctcggggg cggaggtgta ttcataggcc
     2341 acgaaggtgg tgaagcggcc gggatcgttg tggcgcgcgg cggcctgctg aacctcggtc
     2401 caggcgcggc cggcgatatc gggcgcgctg aatcccttcg gcagggttcc gtgctcatag
     2461 ccatcgacca tcttggcgaa ggcctcgccg atcttcttgg gatcggggct gaacaggccc
     2521 tggacgatcg gcaatttgtt gagggggttc ttcgggtcgt tcgcctcgcg catggcgccc
     2581 atgtattcgg agtggtcggt gacagccgtg aagtccagcg gcccgcccga attgcggatg
     2641 ttgaagccgg aggcatggcc gatcgtgccg cccttggcga agctgtaggc gtcgtcaggc
     2701 gtggcgcgga cgttgaagat ataggcgtcg aagctgaggc ccgtgtggac atgcaggtcg
     2761 ccgaaatagg cgttgcggtc ggggttgtag ccggggaggt gagcggcggc tttggccggg
     2821 gcggcctttg acgctggggg cgcagccgcc ggcttcggcg cctgaccggg ggcggcgccg
     2881 gcggcgccca ggac
//
LOCUS       DATAJL010000877         3559 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_123716,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000877 DATAJL010000000
VERSION     DATAJL010000877.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123716"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..753)
                     /locus_tag="VHN39_16650"
     CDS             complement(<1..753)
                     /locus_tag="VHN39_16650"
                     /inference="COORDINATES: protein motif:HMM:NF017076.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHASE2 domain-containing protein"
                     /protein_id="HEX2818024.1"
                     /translation="MPGRPSGVFTRLLARLAAMRKARGAWAEGAVLAGVALAAAVVSL
                     ALSATTPFRFVENLTYDERIAMMAPPAQDEFVIIKMDDAAYHAMSEASPCHCISPINK
                     AWLGDLIATLDAKGVKAVGVDYLLDTWDSPQEFQEFSKRIAGVKAPIVAVVDPAYRPG
                     VDFPVSPKLRYADARALVRVDYDDVIRRYDPLPGTTRALSAEVAAAVGVTPPTKSFAI
                     RYRAAYPGASAENAGAIAPSYSAAFAPVLPEQF"
     gene            complement(754..1584)
                     /locus_tag="VHN39_16655"
     CDS             complement(754..1584)
                     /locus_tag="VHN39_16655"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HEX2818025.1"
                     /translation="MTIAQITDLHVTTGHDPLNQLRNEQRLRQVLRSIQELEPRPVAI
                     IASGDLADHGEAAEYAAVKAILAEVDIPTYYAVGNHDRRDAFMEAFGGPGARRDDNGF
                     IQYVVDFDGLRMVVCDTLEEGKHGAGFCEKRAAWLAATLDAEPDTPTIVVLHHPPILS
                     GVKWMDPQPDAPWIAQLADVVGGRKQIRVMLCGHVHRAFHGLLAGQVVATAPATSIQV
                     TLNLSPVDMQKPDGREILVDEPPGYVLVMADEGRVTTHICVAGDFAPAVAYTRPFGFD
                     "
     gene            complement(1636..3078)
                     /locus_tag="VHN39_16660"
     CDS             complement(1636..3078)
                     /locus_tag="VHN39_16660"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX2818026.1"
                     /translation="MAALKASYPLYLANEAKSPNQDLVVTDKFTGEVATRVAQADAAT
                     IDAGIAACVAATEPMARMAAYERQAVLAHCVTRFTERFDELAMALCIEAGKPIRDARG
                     EVTRLIDTFRIAAEESVRITGEVQPLDISPRAKGYQGMWKRVPIGPCSFVSPFNFPLN
                     LAAHKIAPALAVGCPFVMKPASRTPLGAIIIGEVLAETDLPKGAFSILPAHREGADLF
                     TTDDRLKLLSFTGSPEVGWDLKARAGKKKVVLELGGNAAVIVDQDIAGADMDDAVERI
                     IFGAFYQSGQSCIGVQRIIIHASIYDELRDRLVAKTRTLVMGDPKNEATFIGPMIDEK
                     EAKRLESWIDAARAAGAKVLCGGKREGAMLEATLVEGVGREAKLYAEEAFGPVAILSR
                     FDDFEAALDEVNDSRFGLQAGVFTRDLFKMLTAWDRLDVGGVVIGDVPSYRVDNMPYG
                     GVKDSGLGREGVKFAMEDMTEIRNLVIRRR"
     gene            complement(3103..>3559)
                     /locus_tag="VHN39_16665"
     CDS             complement(3103..>3559)
                     /locus_tag="VHN39_16665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017504244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX2818027.1"
                     /translation="NTVLLDNALATMGAGLPSAMASAMVYPDRKVMAICGDGGFMMNS
                     QEMETAVRLKLNITVLILNDNSYGMIRWKQANMGFKDWGLTYNNPDFVKYAESYGANG
                     YRVGSAAEVPALLEKCLNSPGVNLIEVPVDYSDNDPILNKEIRELSAAV"
BASE COUNT          577 a         1175 c         1207 g          600 t
ORIGIN      
        1 gaactgctct ggcaggaccg gggcgaaggc ggcggagtag gagggcgcaa tggcgccggc
       61 attctcggcc gaggcgccgg gataggcagc gcgatagcgg atggcgaagg acttggtggg
      121 cggggtcacg cccacggccg cggccacctc ggcggagagc gcgcgggtcg tgccaggcaa
      181 ggggtcgtag cggcggatca cgtcgtcata gtccacgcgc accagggccc gcgcatcggc
      241 gtagcgcagc ttcggggaga cagggaaatc gacaccgggc ctataggccg ggtcgaccac
      301 ggccacgatc ggcgccttca cgccggcaat gcgcttgctg aactcctgga actcctgcgg
      361 cgagtcccag gtgtccagca ggtagtccac gccgacggcc ttgacgccct tggcgtccag
      421 ggttgcgatc aggtcgccca gccaggcctt gttgatcggc gaaatgcagt ggcagggcga
      481 agcctcgctc atggcgtgat aggcggcgtc gtccatcttg atgataacga attcgtcctg
      541 ggcgggcggg gccatcatgg cgatgcgctc gtcgtaggtc aggttctcaa cgaaccggaa
      601 gggcgtggtg gcgctgagcg ccagggagac cacggcggcg gccagggcca cgccggccag
      661 caccgcccct tcggcccagg cgccacgcgc cttgcgcatc gctgcgaggc gcgccagcag
      721 gcgggtgaaa acgccgctag gccggcccgg catctagtcg aagccgaagg ggcgcgtgta
      781 ggcgaccgcg ggggcgaagt cgccggcgac gcagatgtgg gtggtaacgc ggccttcgtc
      841 ggccatcacc agaacgtagc ccggcggctc gtccaccagg atttcgcgcc cgtcgggctt
      901 ctgcatgtcc accggcgaca ggttgagcgt gacctggatg gaggtcgccg gcgcggtggc
      961 caccacctgg ccggccagca ggccatggaa agcgcggtgg acatggccgc agagcatcac
     1021 ccggatctgc ttacgcccgc caacgacatc ggccagctgg gcgatccagg gcgcgtccgg
     1081 ctgcgggtcc atccacttca cccccgacag gatcggcggg tgatgcagga cgacgatcgt
     1141 cggcgtgtcc ggttccgcgt cgagggtggc cgcgagccac gccgcgcgct tttcgcagaa
     1201 ccccgccccg tgcttgccct cttccagggt gtcgcagacc accatccgca ggccgtcgaa
     1261 gtccaccacg tattggatga agccattgtc gtcccggcgc gcgccgggcc cgccgaaagc
     1321 ctccatgaag gcgtcacgcc ggtcgtggtt gcccaccgcg taataggtcg ggatatccac
     1381 ctcggccagg atcgccttca ccgcggcgta ttccgccgcc tcgccatggt cggccagatc
     1441 gccggaggcg atgatcgcca cgggcctggg ctccagctcc tggatcgaac gcagcacctg
     1501 gcgcaggcgc tgttcattgc gcagctggtt cagcggatcg tgacccgtcg tgacgtgcag
     1561 gtcagtgatc tgcgcgatgg tcaacacagg cgcctcccca ggcaaacgca atttaccatc
     1621 tacagatacg tgggctcagc gccgacggat gaccaagttc cgaatctcgg tcatgtcttc
     1681 catcgcaaac tttacgccct cgcggcccag gccggaatcc ttgacgccac catagggcat
     1741 gttgtcgacc cgatagctgg gcacatcccc gatcaccacg ccgcccacgt ccagccggtc
     1801 ccaggcggtc agcatcttga aaaggtcgcg ggtgaagacg cccgcctgca ggccgaaacg
     1861 gctgtcgttg acctcgtcca gcgcggcctc gaagtcgtcg aagcgcgaga ggatcgccac
     1921 cggcccgaag gcctcttcgg catagagctt ggcctcgcgc ccgacgccct cgaccagggt
     1981 cgcctccagc atggcgccct cgcgttttcc gccgcagagc accttggcgc cggcggcgcg
     2041 agccgcgtcg atccagcttt cgaggcgttt ggcttccttc tcgtcgatca tcgggccgat
     2101 gaaggtggct tcgttcttgg ggtcgcccat gaccagggtt ctggtcttgg ccaccagccg
     2161 gtcgcgcagc tcgtcgtaga tactggcgtg gatgatgatc cgctggacgc cgatgcagga
     2221 ctggccggac tggtagaagg ccccgaagat gatccgctcg accgcgtcgt ccatgtcggc
     2281 gcccgcgatg tcctggtcga cgatcaccgc ggcgttgccg cccagctcca gcaccacctt
     2341 cttcttgccg gcccgggcct tcaggtccca gcccacctcg ggcgagccgg tgaaggacag
     2401 gagcttcagc cggtcgtcgg tggtgaagag gtcggcgccc tcgcggtgcg ccggcaggat
     2461 cgaaaaagcg cccttcggca ggtccgtctc ggccagcacc tcgccgatga tgatcgcgcc
     2521 gagcggggta cgcgaagcgg gcttcatcac gaacgggcag cccaccgcca gggcgggcgc
     2581 gatcttgtgg gccgccaggt tcagcgggaa gttgaagggc gagacgaacg agcagggccc
     2641 aatcggcacc cgcttccaca tgccctgata gcctttggcg cggggcgaga tgtccagcgg
     2701 ctgcacctca ccggtgatcc gcaccgattc ttcggcggcg atccggaagg tgtcgatcag
     2761 ccgggtgacc tcgccgcggg cgtcgcggat cggcttgccg gcctcgatgc agagcgccat
     2821 ggccagttcg tcgaagcgct cggtaaagcg ggttacgcag tgggccagaa cggcctggcg
     2881 ctcataggcg gccatcctgg ccatgggctc ggtggccgcg acgcaggccg cgatgccggc
     2941 gtcgatggtc gcggcgtcgg cctgggccac gcgggtcgcc acctcgccgg tgaacttgtc
     3001 cgtgaccaca aggtcctggt tgggactctt ggcctcattg gcgaggtaga gggggtatga
     3061 ggctttcagg gcggccatga tcctgccttt gcgctttgga attcagaccg ccgcactcag
     3121 ttccctgatc tctttgttga ggatcggatc attgtccgaa tagtccacgg gaacctcgat
     3181 caggttcacg ccggggctgt tgaggcactt ctccagcagg gccggaacct ccgcggccga
     3241 gccgacccgg tagccgttgg ccccatagct ttccgcgtac ttcacgaaat caggattgtt
     3301 gtaggtcagc ccccagtcct tgaagcccat gttggcctgt ttccagcgga tcatgccgta
     3361 ggagttgtcg ttcaggatca ggacggtgat gttcagcttc agccggacgg cggtctccat
     3421 ctcctggctg ttcatcatga aaccgccatc gccgcagatc gccatcacct tgcggtccgg
     3481 atagaccatc gccgacgcca tggccgaggg gaggcccgcg cccatggtgg ccaacgcatt
     3541 gtccagcagc acggtgttg
//
LOCUS       DATAJL010000878         2272 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_73747,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000878 DATAJL010000000
VERSION     DATAJL010000878.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2272)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2272)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2272
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_73747"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>2272)
                     /locus_tag="VHN39_16670"
     CDS             complement(<1..>2272)
                     /locus_tag="VHN39_16670"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2818028.1"
                     /translation="SGAGMFAMKVPGVVQNPADILALPVKKNGDRIVTIGDIGNVRRT
                     FKEPDFITRFNGQPAVALDVTKRNGANILDTVKTIRSVVAEEQKHWPATVKVDFTYDN
                     SEFIGRTLTVLESGILTASLLVMMIIVASLGIRQGIIVGLAIPACFLIAFLMIHAKGV
                     TLNQMVMFGMVLAVGILVDGGIVVVEYADRKMAEGMPKEMAFAAAAKRMFWPVVNGTL
                     TTLCAFLPFMFWNSISGKFMSYLPLTLFFVLGASIFVALIFTPAVGSIFGRATAVDAE
                     HLAEIEKSEHGDPREMKGFMGWYARTVSYLGRHPGRTVLSTVLIIFLVGFWFAKTPHR
                     TEFFLDQDPEQVTVYVKARGNLSPDAQDGLMKQVEARLVGVKGIDSMYVRAGGITTVG
                     GPTSPPNDSIGRIQVQFDKYEQRKALGIRGKDISEDIRARVADLPGMAVEVREPEGGP
                     PTGKGVQVQMTSHDPAALDKAADLVKAKLATDPQLIELEDNRTSPGIEYNLTVDRVAA
                     GRYGVDVLSVGQAIQFMTDGVLVGRFRPDDAQDELDIRVRFPIDARTVAAFDQLKITT
                     PSGPVPASYFVKRVPSQQVTQIQRREGQRMVLIQANAIKGIAANQKVSQIKAWVTKVG
                     LDPEVHVKFTGADEEGQNAVGFFVAAMAVSLFLMFVILLWQFNSFYGVVVTLSAVILS
                     TVGVLLGVQVNLLHTFDYISVIMLGTGIVALFGVVVGHNIVLVDTFYQLRRQGFEADE
                     ASVRAAAQRFRPVMLTT"
BASE COUNT          396 a          734 c          760 g          382 t
ORIGIN      
        1 gtggtgagca tcaccggccg gaaccgttgc gcggcggcgc gcaccgaggc ctcgtccgcc
       61 tcgaagccct gtcggcgaag ctgatagaag gtgtccacca gcacgatgtt gtggccgacc
      121 acgacgccga acagcgccac gattcctgtc cccagcatga tcacggagat gtagtcgaag
      181 gtgtgcagca ggttgacctg gacgcccagc agcacgccca ccgtcgacag gatcaccgcc
      241 gaaagggtga ccacgacgcc atagaagctg ttgaactgcc aaagcaggat cacgaacatc
      301 aggaacagcg aaaccgccat ggccgcgacg aagaacccga ccgcgttctg accctcctcg
      361 tcggcgccgg tgaacttcac gtgcacctcg gggtcgaggc cgaccttggt gacccaggcc
      421 ttgatctggc tgaccttctg attggcggcg atgcccttga tggcgttggc ctggatcaga
      481 accatccgct ggccttcgcg gcgctggatc tgggtgacct gctgactggg cacccgcttg
      541 acgaagtagc tggccggcac cgggccggag ggcgtcgtga tcttcagttg gtcgaaggcc
      601 gcgaccgtcc gcgcgtcgat cgggaaacgg acccggatgt cgagctcgtc ctgggcgtcg
      661 tcggggcgga agcggcccac cagaaccccg tcggtcatga actggatcgc ctggccaacc
      721 gacagcacgt cgacgccata gcggccggcg gcgacccggt cgaccgtcag gttgtactcg
      781 atcccggggg aggtgcggtt gtcctccagc tcgatcaact gcgggtcggt ggccagcttg
      841 gccttgacca ggtcggcggc cttgtcgagg gcggcgggat cgtggctggt catctgcacc
      901 tggacgccct tgcccgtggg cgggccgccc tcgggctcgc gcacctcgac cgccatgccc
      961 ggcagatcgg cgacgcgggc gcgaatgtcc tcggagatgt ccttcccgcg gatgcccaac
     1021 gccttgcgct gctcgtactt gtcgaactgc acctggatgc ggccgatgga atcgttgggt
     1081 ggcgaggtgg ggccgccgac ggtggtgatt cccccggccc gcacgtacat ggaatcgatg
     1141 cccttcacgc ccaccaggcg ggcctcgacc tgcttcatca gcccgtcctg ggcgtccggc
     1201 gacaggttgc cgcgcgcctt gacgtagacg gtcacctgct ccggatcctg gtcgaggaag
     1261 aactcggtgc ggtgcggcgt cttggcgaac cagaagccca ccaggaagat gatcaggacc
     1321 gtcgacagaa ccgtgcggcc cggatggcgg ccaaggtagg agaccgtgcg ggcgtaccag
     1381 cccatgaagc ccttcatctc gcgcgggtcg ccgtgctcgg acttctcgat ctccgccagg
     1441 tgttcggcgt cgacggcggt ggcgcggccg aagatcgagc ccacggccgg ggtgaagatc
     1501 agggccacga agatcgaggc gccgaggacg aagaacaggg tcagcggcag gtagctcatg
     1561 aacttgccgg agatcgagtt ccagaacatg aacggcagga aggcgcagag cgtggtcagc
     1621 gtgccgttga ccaccggcca gaacatccgc ttggccgccg cggcgaaagc catctccttg
     1681 ggcatgccct cggccatctt gcggtcggcg tactccacca ccacgatgcc gccatcgacc
     1741 aggatgccga ccgccagcac catgccgaac atcaccatct ggttgagcgt cacgcccttg
     1801 gcgtggatca tcaggaaggc gatcaggaaa caggccggaa tcgccaggcc gacaatgatc
     1861 ccctgacgga ttccgaggct ggccacgatg atcatcatca ccagcaggct ggccgtcagg
     1921 atgccgcttt ccagcaccgt cagggtgcgc ccgatgaact cggaattgtc gtaggtgaag
     1981 tcgactttca ccgtcgccgg ccagtgtttc tgctcctcgg cgacgacgct gcggatggtt
     2041 ttcacggtgt cgagaatgtt ggcgccgttt cgcttggtga cgtcgagcgc cacggccggc
     2101 tgaccgttga accgggtgat gaagtccggc tccttgaagg tgcggcgcac attgccgatg
     2161 tcgccgatgg tgacgatccg gtcgccgttc ttcttcaccg gcagggccag gatgtccgcg
     2221 gggttctgga cgacgcccgg caccttcatg gcgaacatgc ccgcgccgga gc
//
LOCUS       DATAJL010000879         3482 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_100550,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000879 DATAJL010000000
VERSION     DATAJL010000879.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100550"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..513)
                     /locus_tag="VHN39_16675"
     CDS             complement(<1..513)
                     /locus_tag="VHN39_16675"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor"
                     /protein_id="HEX2818029.1"
                     /translation="MDSWPEPTDLPATLVQHHDAAWAWAMACCRRDRDAAHDVLHDVY
                     VKVLQRRARFSGRSSFKTWLFGVIRLSAFAANRRRTMLGLLLEPIGEQPQLAAPLADA
                     RTIAMSQLLRRTLSTLPGRQRDVAILVFEHDLTLEEAGAVLGVSTGACRQHYARAKSK
                     LRAAMSLGGWG"
     gene            867..2054
                     /locus_tag="VHN39_16680"
     CDS             867..2054
                     /locus_tag="VHN39_16680"
                     /inference="COORDINATES: protein motif:HMM:NF020084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST N-terminal domain-containing protein"
                     /protein_id="HEX2818030.1"
                     /translation="MRFASAHSLLGDSGRAATAAMTTLVEKLGGAPDLLLIYATENHA
                     TDALISSVRELVPGTPILGSTSCGGVITEAGFHAGFEGAVGMLGVKDPGGAYGVGSAP
                     LTDDPFAAGAAAVERALVASGRDFESPVIVWCCQPPGREEAVLAGIQSVIGPHTPIIG
                     GSSADEQIAGKWREFSTDGVLAEHVVVSVWFPTLSHGAAFQSGYAPTERTGTVTRADG
                     RQVLEIDGRPAADVYSGWTDGEVPPAQSGMILAKSTPTPLGRLAGDLDGVPMFVLSHP
                     AMIGLGGDLSLFTDIAEGDQIVLMRGSPESLVKRAAVVVNDARAAGGWASDQTRGGLV
                     IYCGGCMLHVRERMDEVAQQVAHAMEGAPFLGAFTFGEQGAIVDSSNRHGNLMVSGLI
                     FGG"
     gene            2051..>3482
                     /locus_tag="VHN39_16685"
     CDS             2051..>3482
                     /locus_tag="VHN39_16685"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818031.1"
                     /translation="MTQEVEQLREALASARRLQAAESQRLREHVLVINGIRALSVDDE
                     PDILLARMFELLSAALAFDEAYVLEPKGDLYVCVASTIPGAVAATWPAGAFFRRIAGG
                     GAAVVPDNARVPEWASCQGVAPRPGGAIYAPIAAVHGPGLLLLCAHQQGAYSSSDLAL
                     VSKLGLLVSQTLATGQRRRLAEAMHRAQMERQAAVDASETKSQFFANMSHEVRTPLNG
                     VITVADLLGRTDLGPRQREMVSLILESGRTLERLLSDILDFTKIEAGKLTLETRAFNL
                     TENLTSICELFAAEADAKGLRFEASQIDAAQAWFDGDSVRVRQVVTNLLSNAVKFTER
                     GGVALEVDVRRGGDLSTVVIRVRDTGCGFAAEAADRLFERFEQADGSITRRFGGSGLG
                     LAISRSLALQMGGDITCRATPGEGAEFEFSFVAAPVQPAAEAGGAEEVGAQRAGRILV
                     AEDNPNNRKIIGMVLELIGADVTYAED"
BASE COUNT          552 a         1157 c         1213 g          560 t
ORIGIN      
        1 gccccacccg ccaaggctca tcgccgcacg caacttggac ttggcgcggg catagtgttg
       61 acggcaggcg ccggtcgaga cgcccagcac cgcgccggct tcctcgagag tcagatcgtg
      121 ctcgaaaacg aggatcgcga catcgcgttg ccgccccggc aaggtggaca gcgtgcgccg
      181 caagagctgc gacatcgcga tggtcctggc gtcggccagc ggcgccgcga gttgcggctg
      241 ttccccaatc ggctccagca ggaggccgag catcgtccgt ctgcggttgg cggcaaatgc
      301 cgaaaggcgg atgacgccga acagccaggt cttgaagctc gaccggcccg aaaatcgcgc
      361 ccggcgctgc aggaccttca catagacgtc gtgcagaacg tcgtgcgcgg cgtcgcggtc
      421 gcggcggcag caggccatcg cccaagccca ggcggcatcg tgatgctgca cgagggtcgc
      481 cggcaggtcg gtcggttctg gccatgagtc catgcacggg accgcctcaa catccgattg
      541 gggtgactgg ccccgcttcg tctatgagtg tcgcatcacg ccgttttgta tgactcgccg
      601 agagcggctc cgaaggcttt ctcccgagcc gcgccatggg agattgatcg acgcaggaca
      661 agcgctaggc ccaggccgaa ctttgtcgtc aagcgcaaag caaggcacgg tcacaacaaa
      721 cttccggtgg agtagcggac tactgccgga gatgcggaga cccaccgccg ctgcggcggg
      781 gtgtcgcgga cgaacgacga gatccgcgac aaacggcatt ctttaacgcg ttcatggtcc
      841 accttccgag accccggggg actgtcatgc gctttgcttc cgcacatagc ctgctcggag
      901 actccggacg ggccgccacc gccgccatga cgactctcgt ggaaaagctc ggcggcgcgc
      961 ccgatctcct cctgatctac gccaccgaaa accacgcgac ggacgcgctg atttcttccg
     1021 tgcgtgagct ggtccccgga acgcctatcc tgggcagcac ctcctgcggt ggcgtgatta
     1081 ccgaggcagg gttccacgcg ggcttcgagg gggccgtggg aatgctcggc gtcaaggacc
     1141 cgggcggcgc ttacggtgtc ggctccgcgc ccctgaccga cgacccattc gcggcaggcg
     1201 cagcagcggt cgagcgggcg ctcgtcgcct cgggccgcga tttcgagagt ccggtgattg
     1261 tctggtgctg ccaacctccg ggccgagagg aggccgtgct ggccggcatc cagtcggtga
     1321 tcggtccgca cacaccgatt atcggcggca gttctgcgga cgaacagatc gcgggcaagt
     1381 ggcgcgagtt ctcgacggat ggcgtccttg ccgagcacgt ggtggtgtcg gtgtggtttc
     1441 cgactctctc ccatggcgcg gctttccaga gcggttatgc gcccacagaa cgcaccggca
     1501 cagtgacgcg ggcggacggg cgtcaggtcc tggagatcga cggacgcccg gcggctgatg
     1561 tctacagcgg ctggaccgac ggcgaggtgc cgcccgccca gagcggcatg atcctggcca
     1621 agagcacgcc gaccccgctc ggccggctgg ctggcgatct ggacggcgtg ccgatgttcg
     1681 tgctgtcgca tccggcgatg atcggccttg gcggcgacct gtcgctgttc accgacatcg
     1741 ccgagggcga ccagattgtc ctgatgcgtg gctcgccgga gtccctggtg aagcgcgcgg
     1801 cggtggtggt gaacgatgcc cgcgccgccg gcggctgggc cagcgatcag acccggggcg
     1861 gtctggtgat ctactgcggg ggctgcatgc tgcacgtgcg cgagcggatg gacgaggtcg
     1921 cccagcaggt ggcgcacgcg atggaaggcg ccccgttcct gggggccttc accttcggcg
     1981 agcagggcgc gatcgtcgac agttccaatc ggcacggaaa cctcatggtc tcagggctga
     2041 tattcggcgg atgacacagg aggttgagca gcttcgcgag gcgcttgcct ccgcccggcg
     2101 gttgcaggcc gccgagagcc agcggctgcg tgaacatgtg ctggtcatca atgggatccg
     2161 ggcgctctcg gtcgacgacg agccggacat cctgcttgcg cggatgttcg agctcctgag
     2221 cgccgcgctg gcgttcgacg aggcctatgt tctcgagccc aagggcgacc tctacgtctg
     2281 cgtcgcctcc accatccccg gcgccgtggc cgcgacttgg ccggcgggcg ccttcttccg
     2341 ccgcatcgcc ggcggtgggg cggcggtggt gccggacaat gcccgcgtgc cggaatgggc
     2401 gtcgtgccaa ggcgtcgcgc cgcggccggg cggagcgatc tacgcgccca tcgccgcggt
     2461 gcacgggccg ggcctgctcc tgctgtgcgc tcaccagcag ggggcctatt cctcctccga
     2521 cctggcgttg gtctcgaaac tgggactgct ggtgtcccag accctggcaa ccggccagcg
     2581 gcggcggctg gccgaggcga tgcaccgagc ccagatggag cgccaggcgg cggtcgacgc
     2641 cagcgaaacc aagtcccagt tcttcgccaa catgagccat gaggtccgca cccccctgaa
     2701 cggggtgatc accgtggcgg acctgttggg ccgcaccgac cttgggccgc ggcagcgcga
     2761 gatggtgtcc ctgatcctgg agtcaggacg gacgctggag cgcctgctga gcgatattct
     2821 tgacttcacc aagatcgagg ccggcaagct gaccctcgag acgcgggcct tcaacctgac
     2881 cgagaacctg acgtccatct gcgaactctt cgccgccgaa gcggacgcca agggcctgcg
     2941 cttcgaagcc agccagatcg atgcggccca ggcctggttc gatggtgaca gcgtccgggt
     3001 ccgccaggtc gtgaccaacc tgctctccaa cgccgtcaaa ttcaccgaac ggggcggcgt
     3061 cgctcttgag gtcgacgtcc ggcgaggcgg cgacctctcg acggtcgtca tccgagtccg
     3121 cgacaccggc tgcggcttcg cggccgaggc ggccgatcgc ctgttcgagc ggttcgaaca
     3181 ggccgacggc tccatcacgc gccggttcgg cggctccgga ctggggctcg ccatctctcg
     3241 ctcgcttgcc ctgcaaatgg gcggagacat cacttgccgc gccacgcccg gggagggtgc
     3301 ggagttcgaa ttcagcttcg tggcggcgcc tgtccagccg gcggcagaag ccggcggagc
     3361 cgaggaggtc ggcgcgcagc gcgcaggacg catcctcgtt gccgaggaca accccaacaa
     3421 ccgcaagatc atcggcatgg tcctggagct gatcggcgcg gacgtgacct atgccgagga
     3481 tg
//
LOCUS       DATAJL010000880         1929 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_123806,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000880 DATAJL010000000
VERSION     DATAJL010000880.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123806"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..310)
                     /locus_tag="VHN39_16690"
     CDS             complement(<1..310)
                     /locus_tag="VHN39_16690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818032.1"
                     /translation="MAAHRHIAVFSLAALALALAACSPGAPKGVDKDTLDTAISRAIG
                     DPDSCLLIAEQASGKLVYRYNTHTACARPLPACAGAASGTQTLDQLLKATAKDGQART
                     L"
     gene            complement(352..1230)
                     /locus_tag="VHN39_16695"
     CDS             complement(352..1230)
                     /locus_tag="VHN39_16695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2818033.1"
                     /translation="MSEPARLTRRLSLAAIAAALTAACAPLSLFATLTPKDPAARSAK
                     NVAYGPDPRQRLDVYGPHRNKGQAASPVAVFFYGGSWDTGRRQDYNWVGQALASRGFV
                     TVVADYGLYPQVRYPGFLEDGARAVRWAQDHAAEFGGDPDRIVLVGHSAGAYNAAMIA
                     LDHRYLTAAGVDPAHIKALAGLSGPYDFLPLTDPIAERTFGEATDLAGTQPTHFVTKA
                     SPPAFLATGDADTMVYPRNTVKLAARLREAGVTVEERHYPGVDHVRMVLALSRPFRGR
                     APVLEEMTRFLHAHAG"
     gene            1389..>1929
                     /locus_tag="VHN39_16700"
     CDS             1389..>1929
                     /locus_tag="VHN39_16700"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2818034.1"
                     /translation="MDGESSNGGFVAAGLAQIPPALQAVVDAGDLSGFVTLIWRKGEV
                     AQVNIIGHRDIASGAPTTRDTLFRIASMTKPVTSIAALMLLEDGKLRLEDPITKWLPE
                     FSGMQVLKDAAGPIEDTYPAARDITVEDLMTHRAGLAYAFTSMGPIAQAHEDRLGPPL
                     GTPLTPDAWLKALGSLPLSY"
BASE COUNT          301 a          644 c          704 g          280 t
ORIGIN      
        1 tgagggtgcg ggcctggccg tccttcgccg tggccttgag cagctggtcg agggtctggg
       61 tccccgacgc cgcgccggcg caggccggca gcggccgggc gcaggcggtg tgggtgttgt
      121 agcggtagac cagcttgcca ctggcctgct cggcgatcag caggcaggag tcgggatcgc
      181 cgatggcccg cgagatggct gtgtccaggg tgtccttgtc gacacccttc ggggcgccgg
      241 gcgaacaggc ggccagagcc aaggccaggg cggcgagact gaagacagcg atgtgacggt
      301 gggcggccat gcagtcccca tacgcgaagt gaccgcgccg gttcaattca atcagccggc
      361 gtgggcgtgc aggaacctgg tcatctcctc gagcaccggc gcgcggccgc ggaacggccg
      421 cgacagcgcc agcaccatgc gcacgtgatc gacgcccggg tagtgccgct cctcgacggt
      481 cacgcccgcc tcgcgcagcc tagcggccag tttcacggtg ttccggggat agaccatggt
      541 gtcggcgtcg ccagtggcca ggaaggccgg cggggaggcc ttggtcacga agtgggtcgg
      601 ctgggtgccc gcaaggtcgg tggcttcgcc gaaagtgcgc tcggcgatcg gatcggtgag
      661 cggcaggaag tcatacggtc ccgaaagccc ggccagggcc ttgatgtgcg cgggatcgac
      721 gccggcggcg gtgaggtagc gatggtccag cgcgatcatc gcggcattgt aggcgccggc
      781 cgagtggccc acgaggacga tgcggtcggg atcgccgccg aactccgcgg catggtcctg
      841 cgcccagcgc acggcgcgtg cgccgtcctc caggaacccc ggatagcgga cctgcgggta
      901 gaggccgtag tcggcgacaa cggtgacgaa gccgcgcgag gccagcgcct gacccaccca
      961 gttgtagtcc tgcctgcgcc cggtatccca agagccgccg tagaagaaga cggcgaccgg
     1021 cgacgccgcc tggcccttgt tgcggtgggg accgtagacg tccaggcgct gccgcggatc
     1081 cgggccatag gcgacgttct tggcgctgcg ggcggccgga tccttgggtg tcagggtcgc
     1141 gaacaggctg agcggcgcgc aggccgccgt cagggccgcg gcgatcgcgg ccaggctcaa
     1201 cctgcgggtc agtcgtgcgg gctcgctcat cgtccaccag ctaagcgggc gcggccagga
     1261 ccgcaaccat ggttgtacgg ccaaggagtc gtcagggacg cgcttgacgc cgcggcccgt
     1321 cgcctgcgct atggctgact gaacggcgat aacaggcgac ccctttccaa gggattagga
     1381 gcacgaccat ggacggcgag tcttcaaacg gcggtttcgt ggctgcgggc ctcgcgcaga
     1441 tcccgccggc cctgcaggcg gtggtcgacg cgggcgacct ctccggcttc gtcaccctga
     1501 tctggcgcaa gggcgaggtg gcgcaggtca acatcatcgg ccaccgcgac atcgccagcg
     1561 gcgcgccgac gacgcgcgac acgctcttcc gcatcgcctc gatgaccaag ccggtcacct
     1621 ccatcgcggc cctgatgctg ctagaggacg gcaagcttcg gctggaggac ccgatcacca
     1681 aatggctgcc ggagttttcc ggcatgcagg ttctgaagga tgcggccggc ccgatcgaag
     1741 acacctatcc ggcggcgcgc gacatcaccg tcgaggacct gatgacccat cgggcggggc
     1801 tcgcctacgc cttcacctcc atgggcccca tcgcccaggc tcacgaggac cgcctgggcc
     1861 cgcctctcgg cacgccgctg accccagacg cctggctgaa ggcgctggga agcctgccgc
     1921 tgagctatc
//
LOCUS       DATAJL010000881         1582 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87611,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000881 DATAJL010000000
VERSION     DATAJL010000881.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1582)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1582)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1582
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87611"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VHN39_16705"
     CDS             <1..244
                     /locus_tag="VHN39_16705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818035.1"
                     /translation="PDLPVAALGLLVGVDRFMSQCRALTNFISNGVGTLVIARWEGDL
                     DRDRLKAELDRGPGSDPEALLEEPLPVSRPLSRPPK"
     gene            complement(661..>1582)
                     /locus_tag="VHN39_16710"
     CDS             complement(661..>1582)
                     /locus_tag="VHN39_16710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2818036.1"
                     /translation="KVVTPTFSTAGMASMEPLIRERAAAILDELPIGETFDFVDKVSI
                     ELTSQMLATLFDYPFDQRRNLPKISDMALSGPPPADMTMEQLMERQAAFMPMVMPFMG
                     LWDARKDGPPANDLISLLSQDPVTRKDDRPEGYFGNIMLLTVAGSDTTRHSITGALMA
                     FQDFPEAYDRLRANPALLESAVPEIVRWQSPVAHMRRTATQDVELGGKSIKKGDRVVM
                     WYVSGNRDEEVIAEPDRFIIDRERPRQHVAFGFGIHRCVGNRLAEMQLRVVWEEILKR
                     FERIEVVGEPQRLKSNFVKGYEALPVRIVA"
BASE COUNT          266 a          509 c          551 g          256 t
ORIGIN      
        1 gcccgacctg ccggtggcgg cgctgggcct gctggtcggc gtcgaccgct tcatgagcca
       61 gtgccgcgcg ctgaccaact tcatcagcaa tggcgtgggg accctggtca tcgcccgctg
      121 ggagggcgac ctcgaccgcg acaggctgaa ggctgagctg gaccgcgggc cgggctccga
      181 tccggaagcc ctgttggaag agcccctgcc ggtgagtcgc ccgctgtcca ggccgcccaa
      241 gtgagagccg gtttcgcggt cgcagcggcg ctggcgatag gatcgctttt gtcggcctgc
      301 gacgggcgca atgaagcggg ccaaaacacg gcccagcaag tggcccaacc cgtgcaaacc
      361 gccgacctag aagccggaag ggcgatagac acgcagaacg ccatcaatca ccgcgagtgc
      421 atcgcgggcg gcggcctttg ggatagctca ggggtgaggc ccacgaccgt ggcgggtcac
      481 ccgttcgtcg gatcgtgcaa aggagcgcgc gaggatcgcc ccgtctgcgc cggggaagat
      541 atgagcacgc catgctggat gttcgtttat ggcgacgaac acaacgacac gaactctaag
      601 gctctcccgg agtggagggc ctgcaagacc gatccaccgg acccgatgtg ttgacggccg
      661 tcaggccacg atccgcaccg gcagggcctc gtagcccttc acgaagttcg acttcagccg
      721 ctggggctcg cccaccacct cgatgcgctc gaagcgcttg aggatctctt cccagacgac
      781 gcgcagctgc atctcggcca gccgattgcc gacacagcgg tggatgccga agccgaaggc
      841 cacgtgctgg cgcggccgct cgcggtcgat gatgaaccgg tccggctcgg cgatcacctc
      901 ctcgtcgcga ttgcccgaga cgtaccacat gaccacccga tcacccttct tgatggactt
      961 gccgccgagt tcgacgtcct gcgtggcggt gcggcgcatg tgggccaccg ggctctgcca
     1021 gcggacgatc tcgggcaccg ccgattccag cagcgccggg ttggcccgca ggcggtcgta
     1081 agcctccgga aagtcctgga aagccatcag ggcgccggtg atcgagtggc gggtcgtatc
     1141 gctgccggcc acggtcagca gcatgatgtt gccgaagtag ccctcgggcc ggtcgtcctt
     1201 gcgggtcacg gggtcctggc tgagcagcga gatcaggtcg ttggccggcg ggccatcctt
     1261 gcgggcgtcc cagagtccca tgaatggcat gaccatcggc atgaacgccg cttgccgctc
     1321 catcagctgt tccatggtca tgtcggcggg cggcgggccg gagagcgcca tgtcggagat
     1381 cttcggcagg ttgcggcgct ggtcgaaggg gtagtcgaag agggtggcca gcatctggct
     1441 ggtgagctcg atggagacct tgtccacgaa gtcgaaggtc tcgccgatcg gcagctcgtc
     1501 gaggatagcc gcggcgcgtt cgcggatcag cggctccatg gacgccatgc cggccgtcga
     1561 gaaggtgggc gtcaccacct tg
//
LOCUS       DATAJL010000882         1596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87729,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000882 DATAJL010000000
VERSION     DATAJL010000882.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87729"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..530)
                     /locus_tag="VHN39_16715"
     CDS             complement(90..530)
                     /locus_tag="VHN39_16715"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016790 - thiolester hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX2818037.1"
                     /translation="MTDVPDFMREMSQRMVGGTPQSAALGFRFVSVAPARGSLEVPWR
                     EDLVGDPDTGVIAGGVVTSLLDHTCGMAMAAAAGAEPFSTATLDLRIDYMRPAAPRAG
                     VIAEAHCYKLTRTIGFVRAEAWDVDKSDLIATAQAAFVLNRPHT"
     gene            568..>1596
                     /locus_tag="VHN39_16720"
     CDS             568..>1596
                     /locus_tag="VHN39_16720"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     exonuclease"
                     /protein_id="HEX2818038.1"
                     /translation="MRLLWAEPPPSHYISSTLIRPQDLLCPRPEGLYCPPGDFYVDPT
                     RPVARAVITHGHADHARAGHGAVLATPETLDIMAERYGLGFAEAQEAAVYGTPVNRDD
                     VQVTLVPAGHVLGSAQAVVRWKGLTMVVSGDYKRRRDPTCALFEPVPCDVFITEATFG
                     LPVFRHPDDRQEIARLLRSVAQFPERSHLVGAYALGKAQRIIRLLREAGWDRTLYVHG
                     ALERLNALYERHGIDLGPLETATSAKKQDFAGQIIIAPPSATQDRWSRRFPDPVTAFA
                     SGWMQVRARARQRGVELPLVISDHADWDELTATVDELRPAELWITHGREEALARWAEL
                     HGVPARALG"
BASE COUNT          230 a          609 c          533 g          224 t
ORIGIN      
        1 ctccgcatgc atgcccagga accgcacgta gggcacccgc tgcaggaagg tttccagctg
       61 ttcgcccggg cttttgggga cggacgtcgt catgtgtgcg gccggttcag cacgaaggcc
      121 gcctgggccg tggcgatcag gtcggacttg tccacgtccc aggcttcggc gcggacgaag
      181 ccgatggtgc gggtgagctt gtagcagtgg gcctcggcga tcacgccggc ccgcggcgcg
      241 gcggggcgca tgtagtcgat ccgcaggtcc agcgtcgcgg tggagaaggg ctcggcgccg
      301 gccgccgcgg ccatggccat gccgcaggta tggtcgagca ggctcgtcac cacgccgccg
      361 gcgatcaccc ccgtgtcggg atcgccgacc aggtcctcgc gccagggaac ctccagcgac
      421 ccgcgtgcag gcgccacaga gacgaagcgg aaccccagcg ccgcggactg cggcgtgccg
      481 cccaccatcc gctgggacat ttcgcgcatg aagtcgggga cgtcggtcat gagccaacgg
      541 cgtagggccg aagccgcgcc gcggtcaatg cggcttctct gggcggagcc tccgccttcg
      601 cactacatta gctccacgct gatccggccc caggacctcc tctgcccccg tcccgagggc
      661 ctctactgcc cgcctggcga tttctacgtc gacccgacgc ggccggtggc gcgcgcggtg
      721 atcacccacg gccatgccga ccacgcccgc gccggccacg gcgccgtgct cgccacgccc
      781 gagaccctgg acatcatggc cgagcgctat ggcctgggct tcgccgaggc ccaggaagcg
      841 gctgtctatg gaacgccggt gaaccgcgac gacgtccagg tgaccctggt cccggcgggc
      901 cacgtgctgg gctcggccca ggcggtggtg cgctggaagg gcctgaccat ggtcgtctcc
      961 ggcgactaca agcgccggcg cgatccgacc tgcgcgctct tcgagcccgt tccctgcgac
     1021 gtcttcatca ccgaggccac cttcggcctg ccggtgttcc gccacccgga cgacaggcaa
     1081 gagatcgccc gcctcctgcg ctctgtcgcc cagttcccgg agcgcagcca cctggtcggc
     1141 gcctatgcgc tgggcaaggc gcaacggatc atccgcctgc tgcgcgaggc cggctgggac
     1201 cggaccctct atgtgcacgg cgccctggag cggctgaacg ccctctacga gcggcacggc
     1261 atcgacctcg gccccctgga gaccgccacc tcggcgaaga agcaggactt cgccggccag
     1321 atcatcatcg ccccaccgtc ggccacccag gaccgctgga gccgccgctt ccccgatccg
     1381 gtcaccgcct tcgcctccgg ctggatgcag gtccgcgccc gcgcccgcca gcgcggcgtc
     1441 gaactccccc tggtgatctc cgaccatgcc gactgggacg aactcaccgc caccgtcgac
     1501 gaactccgcc ccgccgaact ctggatcacc cacggccggg aagaggcgct cgcgagatgg
     1561 gccgaactgc acggcgtccc ggcccgcgcc ctgggg
//
LOCUS       DATAJL010000883         1609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_100768,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000883 DATAJL010000000
VERSION     DATAJL010000883.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100768"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..547
                     /locus_tag="VHN39_16725"
     CDS             <1..547
                     /locus_tag="VHN39_16725"
                     /inference="COORDINATES: protein motif:HMM:NF040249.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818039.1"
                     /translation="HPRLDVAAGFDPATIVSIDAEVPQITYDFTGGGLYGTEAAVTSK
                     EQADHDLRYLLAVALLDGNVMPAQFTDDRINRPDVQSLLTKVSAQPNASYTAQYPRRM
                     PAKITVRLKDGTTLEHEVQDYPGMPSRPFTWNDVVEKFDQLTADRIDSDLANQIKDAV
                     HSLEHIKVRDLMALLARIHVD"
     gene            878..>1609
                     /locus_tag="VHN39_16730"
     CDS             878..>1609
                     /locus_tag="VHN39_16730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2818040.1"
                     /translation="MGTITTADGAEIFYKDWGTGQPIVFSHGWPLSADDWDTQMMFFL
                     LHGYRVIAHDRRGHGRSTQTGDGHDMDHYADDLAAVTAHLDLHDAVHVGHSTGGGEVA
                     HYIARHGESRVARAVLISSVPPLMLQTDANPGGLPKSVFDGWQDQVATNRTRFYRDLP
                     AGPFYGYNRPGAQPSEAIIEAWWRQGMMGGAKAHYDGIVAFSQTDFTEDLRSISVPTL
                     VMHGDDDQIVPYADAGPLSAKLVKNG"
BASE COUNT          303 a          578 c          501 g          227 t
ORIGIN      
        1 ccatccccgc ctggatgtcg ccgccgggtt cgacccggcc acgatcgtct cgatcgacgc
       61 cgaggtcccg cagatcacct acgacttcac cggcggcggg ctgtacggca cggaggcggc
      121 cgtgacctcg aaggaacaag cagaccacga cctgcgctac ctgctcgccg tggcgctgct
      181 ggacgggaac gtcatgcctg ctcagttcac tgacgaccgc atcaaccgcc cggacgttca
      241 gtcgctgctc acgaaagtgt ccgcacagcc gaacgcctcc tacaccgcgc agtacccgcg
      301 ccgcatgccg gcgaagatca ccgtgcggct gaaagacggc acgacgctcg agcacgaggt
      361 gcaggactat ccggggatgc cgtcgcggcc gttcacctgg aacgacgtgg tcgagaagtt
      421 cgaccagctc accgccgatc gcatcgacag cgacctcgcg aaccagatca aggacgcggt
      481 ccactcactc gagcacatca aggtccggga cctgatggcc ctgctcgctc gcattcacgt
      541 cgactgacag cacaggagaa gcggtgaaag cccacgccgc catgggcctg ctgcacgccg
      601 ggatcgccgt cgcgctgcgc gccgcaggcg gcttcacgcc catgacatcg agctcatcga
      661 catcggcaat gcccagactg ctcccggcca tggcggctgt gaccggcgcg gtcatcgcgg
      721 tgggcgccgc gtacgtactg ccgggcccgc gaaggtcgag gaggccaacg ccgccgaggg
      781 acagccgctg caccgggtca cctgacgagg tatgcagggg caccctgatc gccgtatttc
      841 ccccatgcac cagcaccatc tagaaaagga gcaccacatg ggcaccatca ctaccgccga
      901 tggcgcggag atcttctaca aggactgggg aaccggtcag ccgatcgtgt tcagccacgg
      961 ctggcccctg tcggccgatg actgggacac gcagatgatg ttcttcctgc tgcacggcta
     1021 ccgtgtcatc gcccacgacc ggcgcggcca cgggcgatcc acccagaccg gcgacggcca
     1081 cgatatggat cactacgccg acgatctcgc cgcagtgacg gcacacctgg atctccacga
     1141 cgccgtgcac gtcggccact ccaccggcgg cggcgaggtg gcgcactata tcgcccggca
     1201 cggcgaaagc cgggtggcca gggcggtact gatcagctcc gtcccgccgc tgatgctgca
     1261 gaccgacgcc aaccccggcg gcctgcccaa atccgtcttc gacggctggc aggaccaggt
     1321 cgccaccaac cgcaccaggt tctaccgcga cctgcccgca gggccgttct acggctacaa
     1381 ccggcccggc gcccagccgt cagaggcgat catcgaggcc tggtggcggc agggcatgat
     1441 gggcggcgcg aaggcgcact acgacggcat cgtcgccttc tcgcagaccg acttcaccga
     1501 ggatcttcga agcatcagcg ttccgacgct ggtcatgcac ggcgacgacg atcagatcgt
     1561 gccttacgcc gacgcggggc cgctgtccgc gaaactggtg aaaaacggc
//
LOCUS       DATAJL010000884         6349 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_110468,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000884 DATAJL010000000
VERSION     DATAJL010000884.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6349
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110468"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1256
                     /locus_tag="VHN39_16735"
     CDS             <1..1256
                     /locus_tag="VHN39_16735"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004474 - malate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006097 - glyoxylate cycle [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="malate synthase G"
                     /protein_id="HEX2818041.1"
                     /translation="TKAGRTETRRLEEDRRYETTRGPLTLPGRSLMLVRNVGHHMTTD
                     AVRYEGQPVFETVLDGLVTVAAALHDLKGQRRNSPAGSVYVVKPKMHGPDEVALAVRL
                     FDLVEDALGLARNTVKLGVMDEERRTSANLAACIHAARERIVFINTGFLDRTGDEIHT
                     AMEAGPVVRKDTIKAEPWLPAYEKRNVEIGLATGFPGRAQIGKGMWAAPDMMAAMLAA
                     KIGHPKAGATTAWVPSPTAAVLHALHYHEVDVPTLQAAMAADGARTGTDELLTPPLAR
                     SNWNAADVAEELDNNAQGILGYVVRWIDQGVGCSKVPDIHDVGLMEDRATLRISSQHI
                     ANWLHHGVCTEAQVRETLTRMAKVVDAQNAGDPAYRPMSPDPSASIAFQAALDLVFKG
                     REQPNGYTEHILHARRRERKAQAAG"
     gene            complement(1266..2042)
                     /locus_tag="VHN39_16740"
     CDS             complement(1266..2042)
                     /locus_tag="VHN39_16740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2818042.1"
                     /translation="MALDLFSLKGRVALITGGSRGIGKMIAKGFIDSGAKVYISSRKA
                     PACIETAEELGPNCIALPQDVSTLDGVKALAAAYLAKESKLDILVNNAGAAWGAPFDE
                     FPESGWDKVLNLNLKSPFFLTQALHGALKAAASRDQPAKVINIASIDGIRLNPQETYS
                     YHASKSGLIYLTRRMAATLIEDSINVTAIAPGAFASEMNRVARDHGDEIAKRIPSRRI
                     GRDEDMACAAIYLASRAGDYVVGETIAVDGGVALASMGGL"
     gene            2206..4284
                     /locus_tag="VHN39_16745"
     CDS             2206..4284
                     /locus_tag="VHN39_16745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HEX2818043.1"
                     /translation="MTEINSVTTLTRDGDIAIITLNSPPVNALSAKVREGLFEGFKAA
                     GASDAKAIVLICEGRTFIAGADITEFGGAMAGPSLFDVQDMMEGSPKPVVAAIHGTAL
                     GGGLEVALCAHYRVAVPSARVGLPEVALGLLPGAGGTQRLPRIVGVEAALDMVTSGRH
                     VPAKQALAVGLVDEIVEEGKLLEGALAFARKAVAEGKPLVKVRDNNTKLQAAKGHPEI
                     FADFRKANARKFRGFMAPENNIKAVEAAVNSASFDEGLKAERKLFGELMMGAQSAAQR
                     YYFFAERQANKIPDVPDDTPIRPVKSVGIIGAGTMGGGIAMNFANVGISVVIVEQEQA
                     ALDRGLGVIRNNYERSRSAKPEETEKRMSLITGSLSMEDAFKDVDLVIEAVFERMDVK
                     KSIFERLDAICKPGAILATNTSGLNIDEIASVTKRPQDVIGLHFFSPANVMKLLEIVR
                     ADHTAKDVIATSMKLAKQIGKIAVLVGVTPGFVGNRILGQRQREAQKLVLEGAMPWDV
                     DRVLYDFGFPMGPFAMSDLAGLDIGWVKEKSKGETLRDVLCEMDRRGQKTGAGYYDYD
                     ENRNAKPSPVTEKIITDFIVKSGTNPRKISDEEILERCVYPMINEGAKILEEGKAIRP
                     SDVDVVWVNGYGWPVYRGGPMHYGDQVGPEKVLAKMKEFQATMGDVFKPSALLEKLVA
                     DGKKFSDIKA"
     gene            4321..5526
                     /locus_tag="VHN39_16750"
     CDS             4321..5526
                     /locus_tag="VHN39_16750"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018113079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003985 - acetyl-CoA C-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase"
                     /protein_id="HEX2818044.1"
                     /translation="MREAVIVAARRTAIGKAYRGAFNNTYGATLGAHAIAAAVEQAGI
                     DPGEIDDIAMGCALQQGTTGNNIARQAALRAGLPNTVSGMTIDRQCSSGLMGVATAAK
                     YIINDGAPIAMGAGIESISLVQNGHINGFMAVDPWLKENVPELGTSMLETAEVVAERY
                     NISREAQDEYALQSQQRTGQAQSEGRFDREIAPMTTIMKVLVNKETGETADKEITIGA
                     DEGNRPQTTLADLQKLQPVFKGGRYVKEGKYVTAGNASQLSDGAAAVLMMERKEAEKR
                     GLEPLGAYRGMAVAGCGPEEMGIGPVFAIPKLLERNGLKIEDIDIWELNEAFASQALY
                     CRDKLGIDPAKYNVSGGSISIGHPYGMTGARCTAHLLYEGKRRGAKYGVVTMCIGGGM
                     GAAGLFEIF"
     gene            complement(5608..6342)
                     /locus_tag="VHN39_16755"
     CDS             complement(5608..6342)
                     /locus_tag="VHN39_16755"
                     /inference="COORDINATES: protein motif:HMM:NF020795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwqG family protein"
                     /protein_id="HEX2818045.1"
                     /translation="MRIVGGEGGRSCLGGAPNIAGAWPRYAGRPLSVIAQLDLEEIRA
                     AGGPDWLPHKGRLLFFYEIEYSGWGIDPGDLGCFAVRYEPDSGTPETPPEDLPDDGRW
                     PEYPVTFIADISRPDPERLNVKWADLSGKEERELEAALEAMAPAEPAHHIGGYPDAVQ
                     NDGMELECQRMTSGVRFEATTSAEAIGSGGRKGEVTDWRLLLQLDTDNEAGMMWGDTG
                     RLYFWGREQDARAGDFSRAWMILQCY"
BASE COUNT         1151 a         2186 c         2062 g          950 t
ORIGIN      
        1 tcaccaaggc cggtcgcacg gagacccgcc gcctggagga ggaccgccga tacgaaacga
       61 ctcggggacc tctgacactc ccaggccgca gcctgatgct ggttcgcaac gtcggccacc
      121 acatgaccac cgacgcggtc cgctatgagg gccaaccggt cttcgagacc gtgctcgacg
      181 ggctggtcac cgtcgccgcc gccctgcacg acctgaaggg ccaacgccgc aacagcccgg
      241 cgggctcggt ctatgtggtg aaacccaaga tgcacggccc cgacgaggtc gcgctggccg
      301 tgcggctgtt cgacctggtc gaggatgcgc tgggcctggc gcgcaacacc gtcaagctcg
      361 gcgtcatgga cgaggagcgc cgcaccagcg ccaacctggc ggcctgcatc cacgccgcgc
      421 gcgagcggat cgtcttcatc aacaccggct tcctcgaccg cacgggcgac gagattcaca
      481 ccgccatgga agccggcccg gtggtgcgca aggacaccat caaggccgag ccctggctgc
      541 cagcctacga gaagcgcaac gtcgagatcg ggctggccac cggcttcccc ggccgcgccc
      601 agatcggcaa gggcatgtgg gccgcgcccg acatgatggc cgccatgctg gccgccaaga
      661 tcggccaccc gaaggccggc gcgaccaccg cctgggtgcc ttcgccaacc gccgcggtcc
      721 tgcatgccct gcactaccac gaggtcgatg tgccgaccct gcaggcggcc atggccgccg
      781 acggcgcgcg gaccgggacc gatgaactgc tgaccccgcc cctggcgcgc tccaactgga
      841 acgccgccga cgtggccgag gagctggaca acaacgccca gggcatcctc ggctacgtgg
      901 tccgctggat cgaccagggc gtcggctgct ccaaggtgcc cgacatccac gacgtgggcc
      961 tgatggagga ccgcgcgacc ctgcgcatct ccagccagca catcgccaac tggctgcatc
     1021 acggcgtctg caccgaggcc caggtccgcg agacgctcac gcgcatggcc aaggtggtgg
     1081 acgcccagaa cgccggcgac ccggcctacc gacccatgag ccccgacccc tctgccagca
     1141 tcgccttcca ggcggcgctg gacctggtgt tcaagggccg cgagcagccc aacggctaca
     1201 ccgagcacat cctccacgcc cgccggcggg agcggaaggc ccaagctgcg ggctgaggcg
     1261 gcgggctaga gtccgcccat gctggccagc gccacaccgc catccacggc gatggtctcg
     1321 cccaccacat agtcgccggc ccggctcgcc agatagatgg ccgcgcaggc catgtcctcg
     1381 tcgcggccga tgcggcgcga cgggatgcgc ttggcgatct cgtcgccgtg atcgcgggcc
     1441 acccggttca tctcggacgc aaaagcgcca ggtgcgatgg cggtcacgtt gatggaatcc
     1501 tcgatcagcg tcgcggccat ccggcgggtc aggtagatca ggcccgattt cgacgcgtgg
     1561 taggaatagg tctcctgcgg gttcagccgg atgccgtcga tcgaggcgat gttgatcacc
     1621 ttggccggct ggtcgcggct ggcggcggcc ttcagggcgc cgtgcagggc ctgggtcagg
     1681 aagaagggcg acttgaggtt caggttcagg accttgtccc agccgctctc cggaaactcg
     1741 tcgaagggcg cgccccaggc ggcgccggcg ttgttgacca ggatgtcgag cttggactcc
     1801 ttggcgagat aggcggcggc cagcgctttc acgccatcca gcgtcgagac gtcctgcggc
     1861 agggcgatgc agttggggcc gagctcctcg gcggtctcga tgcaggccgg ggccttgcgc
     1921 gaggagatgt agaccttggc gccggagtcg atgaagccct tggcgatcat cttgccgatg
     1981 ccgcgcgagc cgccggtgat cagcgccacg cggcccttca gtgagaacag atcgagcgcc
     2041 atcgcgcgcc tccccttgat tgttgtcgcg ggctctcaga gccgccccaa tcccctcgca
     2101 catttgactt ggaagggtcc agcgcggcct gtaacaagcg tttgaatttc ggggccgcca
     2161 ccccagctac aagagcggtc cgccagccat agggacgcat ccgacatgac cgagatcaat
     2221 tcggtgacca cgctgacccg cgacggcgac atcgccatca tcacgctgaa ttcgccgccg
     2281 gtgaacgcgc tgtcggccaa ggtgcgcgaa ggcctgttcg agggcttcaa ggcggccggg
     2341 gcctcggatg ccaaggccat tgtcctgatc tgcgagggcc gcaccttcat cgccggcgcc
     2401 gacatcaccg agttcggcgg cgccatggcc ggccccagcc tgttcgacgt gcaggacatg
     2461 atggagggct cgcccaagcc ggtggtggcc gcgatccacg gcacggcgct gggcggaggc
     2521 ctggaggtcg cgctctgcgc ccactaccgc gtggccgtcc catcagcccg cgtcggcctg
     2581 ccggaagtgg ccttgggcct cctgcccggc gccggcggca cccagcggct gccgcgcatc
     2641 gtcggtgtcg aggcggcgct cgacatggtc acctccggcc gccacgtgcc ggccaagcag
     2701 gcgctggcgg tcggtctggt cgatgagatc gtcgaggagg gcaagctgct ggaaggcgcg
     2761 ctcgcctttg cccgcaaggc cgtcgccgag ggcaagcccc tggtaaaggt gcgcgacaac
     2821 aacaccaagc ttcaggccgc caagggccac cccgaaatct tcgccgactt ccgcaaggcc
     2881 aatgcgcgga agttccgcgg cttcatggcg ccggagaaca atatcaaggc cgtcgaggcc
     2941 gcggtgaact ccgccagctt cgacgagggg ctgaaggccg agcgcaagct cttcggcgag
     3001 ctgatgatgg gcgcccaatc ggcggcccag cgctactact tcttcgctga gcggcaggcc
     3061 aacaagatcc ccgacgtgcc ggatgacacc ccgatccggc cggtcaagtc ggtgggcatc
     3121 atcggcgccg gcaccatggg cggcggcatc gccatgaact tcgccaacgt cggcatttcg
     3181 gtggtcatcg tcgagcagga gcaggcagcg ttggaccgcg gtctcggcgt catccgcaac
     3241 aactacgagc gctcgcgcag cgcgaagccc gaagagaccg aaaagcgcat gagcctgatc
     3301 accggctcgc tctcgatgga ggacgccttc aaggacgtcg acctggtgat cgaggcggtc
     3361 ttcgagcgca tggacgtcaa gaagtcgatc ttcgagcggc tggacgccat ctgcaaacct
     3421 ggcgcgatcc tggccaccaa cacctctggc ctgaacatcg acgagatcgc ctcggtcacc
     3481 aagcgaccgc aggatgtcat cggcctgcac ttcttctcgc cggccaacgt catgaagctg
     3541 ctggagatcg tccgcgccga ccacacggcc aaggacgtga tcgccacctc gatgaagctg
     3601 gccaagcaga tcggcaagat cgcggtgctg gtgggcgtga cccccggctt cgtcggcaac
     3661 cggatcctcg ggcagcgcca gcgcgaggcc cagaagctgg tgctggaagg cgccatgccc
     3721 tgggacgtcg accgcgtgct ctacgacttc ggtttcccca tgggcccgtt cgccatgagc
     3781 gacctggccg gcctcgacat tggctgggtg aaggaaaagt ccaagggcga gaccctgcgc
     3841 gacgtgctct gcgagatgga ccgccgcggc cagaagaccg gggccggcta ctacgactac
     3901 gacgaaaacc gcaacgccaa gcccagccct gtcaccgaga agatcatcac cgacttcatc
     3961 gtcaaatcgg ggaccaatcc acgcaagatc agcgacgagg agatcctgga acgctgtgtc
     4021 tatccgatga tcaacgaggg cgcgaagatc ctcgaagagg gcaaggcgat ccgcccgtcc
     4081 gacgtcgatg tggtctgggt caacggctac ggctggccgg tctaccgcgg aggcccgatg
     4141 cattacggcg accaggtcgg cccggaaaag gtgctggcca agatgaagga attccaggcc
     4201 accatggggg atgtgttcaa gccctcggcc ctcctggaaa agctggtcgc cgacggcaag
     4261 aagttctccg acatcaaggc ctgatccggc ctccccatct ctcgaagcag gacccaatcc
     4321 atgcgtgaag ccgtcatcgt cgccgcccgc cgcaccgcca tcggcaaggc ctatcgcggc
     4381 gcgttcaaca acacctacgg cgcgaccctg ggcgcccacg ccatcgccgc cgccgtcgaa
     4441 caggccggca tcgacccggg cgagatcgac gacatcgcca tgggctgcgc cctgcagcag
     4501 gggaccaccg gcaacaacat cgcccgccag gcggcgctgc gcgcgggcct gcccaacacc
     4561 gtctcgggca tgaccatcga ccgccagtgc tcgtcaggcc tgatgggcgt ggccacggcg
     4621 gccaagtaca tcatcaacga cggcgcgccg atcgccatgg gcgccgggat cgagtcgatc
     4681 agcctcgtgc agaacggcca catcaacggc ttcatggccg tcgacccgtg gctgaaggag
     4741 aacgtgccgg agctcggaac ctcgatgctg gaaaccgccg aggtggtggc cgagcgctac
     4801 aacatcagcc gcgaggcgca ggacgaatat gctctgcagt cgcagcagcg caccggtcag
     4861 gctcagtcgg aaggccgctt cgaccgcgag atcgcgccca tgaccacgat catgaaggtg
     4921 ctggtgaaca aggagaccgg cgagaccgcc gacaaggaga tcaccatcgg cgccgacgag
     4981 ggcaaccgcc cccagaccac gctcgccgac ctgcagaagc tgcagccggt attcaagggc
     5041 ggccgctatg tgaaggaagg caagtacgtt accgccggca acgcctcgca gctctccgac
     5101 ggcgctgcgg cggtgctgat gatggaacgc aaggaagccg agaagcgcgg cctggagccc
     5161 ttgggcgcct atcgcggcat ggccgtcgcc ggctgcggcc cggaagaaat gggcattggc
     5221 ccggtcttcg cgatccccaa gctcctggag cgcaacggcc tgaagatcga ggacatcgac
     5281 atctgggagc tgaacgaggc cttcgcctcc caggcgctct attgccgcga caagctgggc
     5341 atcgatccgg cgaagtacaa cgtctccggc ggctcgatct ccatcggtca cccctatggc
     5401 atgaccggcg cccgttgcac ggcgcacctg ctgtacgagg gcaagcgccg cggcgccaag
     5461 tacggcgtcg tcaccatgtg catcggcggc ggcatgggcg ccgcagggct gttcgagatt
     5521 ttctaggctt gaggttttag cttcagggca gggccgtccg agagggcggc cctttttgct
     5581 agggcggggc tctgcaaggc cggagcctca ataacactgc agaatcatcc acgcccggga
     5641 gaagtcgccc gcccgagcgt cctgctcgcg cccccagaaa tacagacgtc ccgtatcgcc
     5701 ccacatcatt ccagcctcgt tgtcggtgtc gagttggagc agcaggcgcc agtccgtgac
     5761 ctcgcccttc cggccccccg acccaattgc ctcggcactc gttgtggcct caaagcggac
     5821 gccggatgtc atgcgctggc actccagttc catcccatcg ttttggactg catcgggata
     5881 gccgccgatg tgatgcgccg gctcggccgg cgccatggct tccaaagccg cctcaagttc
     5941 gcgttcttcc ttcccggata ggtctgccca tttcacattg aggcgttcgg ggtcaggccg
     6001 ggaaatgtcc gcaatgaagg tcaccggata ttccggccat cgaccgtcat cgggcaaatc
     6061 ctccgggggc gtctcgggcg ttcccgaatc cggttcgtag cgaacggcaa agcatccgag
     6121 gtcaccagga tcgatgcccc agccgctgta ttcaatctca tagaagaaga gcaggcgccc
     6181 tttgtggggc agccaatccg gcccacccgc ggctcgtatc tcctccaggt cgagttgcgc
     6241 gatgacgctc aaggggcgtc ccgcatatcg cggccacgcg ccagcaatgt tcggtgctcc
     6301 acccaggcaa gaccggccgc cttcaccgcc gacgatgcgc acacatggc
//
LOCUS       DATAJL010000885         2994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_100783,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000885 DATAJL010000000
VERSION     DATAJL010000885.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100783"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..956)
                     /locus_tag="VHN39_16760"
     CDS             complement(<1..956)
                     /locus_tag="VHN39_16760"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2818046.1"
                     /translation="MFLVYVLAYTDRQFAVLMAHPMGAQLGATGGQIVGVYGTAFGVM
                     FAVSGLVLAPVAARFSPWRWIACALVLWSASALATAFVHSLGELWAARVVLAVGEAAA
                     MPPLVALIGRRIPQRHWALAGAAIIGGAFVGGGLAFAISGEVIRLAGPEGWRGAFLAV
                     GAAGLPLALALWFRGDGQRQDPVDDVSPFRLTPSVVLFPLLLFVALLPATWMAPAALA
                     LGAETAVLWLRDLQRTDPAAALETIGSPPFRGFLAAFAAILFVDSALFYWLPVLATER
                     FAGASVGLILGVITIVAGWSAALLGGWIADRLARRRRSGRIRL"
     gene            1148..2224
                     /locus_tag="VHN39_16765"
     CDS             1148..2224
                     /locus_tag="VHN39_16765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2818047.1"
                     /translation="MLGSQAIDTFFLGATTPGLWPSALETIAHDLQADGATLMSGKVN
                     ASRVSTSTGIAGFVEEYFSLAVAQFDSREDRVNPTTGDGFVGDFDTYTAEEIDRDPYY
                     IDFLRPRGFSWHAVACLGGGDSPLVLSLKRRWSLGPFQRSELDQISTVLPYLRAGAHA
                     ASVALNFRSQDHLEALTAAGHGGLLLNREGAVVAFNATVELGDGLSIVEGRLRAAYPS
                     EQGGLDRAVAIAVSQAPPSELPSPTPAILHRPSGRRPLIVRVVRLFDIAPNPVASARA
                     VVSIVDTAALPIPAASLLRELFGLTPKETELAVLLGSGRSLTEAADLCHISLPHARQR
                     LKIVFQKTETSRQSELVTLLLRLA"
     gene            2366..>2994
                     /locus_tag="VHN39_16770"
     CDS             2366..>2994
                     /locus_tag="VHN39_16770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818048.1"
                     /translation="MARIRTAILAAVGLAGALAATSALAGATFTDTTFNPADYTLGAF
                     KDASVTVNSYGQTATGGNPGAALQGLASSTGVNAQGVLLTALDNTFVYDPTTSGAITS
                     LDASLDRFADFTNGGAVSLVGSYSLRVLADQDGQLYQATFVFGPFGQPGGTWNSLSQT
                     GILASNFSTLDAGNFTGSGVVGGLNFGGDAITFGFAMRASGAVNGDGSPS"
BASE COUNT          517 a         1064 c          989 g          424 t
ORIGIN      
        1 aggcggattc gcccggaccg ccgccgacgg gccaggcgat cggcgatcca gccgcccagg
       61 agggccgccg accagccggc cacgatggtg atcacgccca ggatcagacc tacggaagcg
      121 cccgcgaacc gctccgtcgc caggacgggg agccagtaga acagcgccga gtcgacaaac
      181 aggatcgcag cgaaggccgc caggaagccg cggaacggcg gcgacccgat cgtctcgagc
      241 gccgcggccg gatcggtgcg ctgcagatcg cgcagccaca ggaccgcggt ctccgctccg
      301 agcgccaggg cggcgggggc catccaggtc gctggcagca gggcgacgaa cagcagcaag
      361 ggaaaaagca cgacactcgg cgtcagacgg aacggcgaga catcgtcgac ggggtcttgg
      421 cgctgaccat cgccgcggaa ccacaacgcc agcgccagag gcagaccggc cgcgcccacc
      481 gctaggaagg cgcctcgcca cccttccggg cccgccagac ggatgacttc tccgctgatc
      541 gcgaacgcaa gtccgccccc gacgaaagcc ccgccgatga tcgcagcgcc ggcgagcgcc
      601 cagtgtcgct gcggaatccg cctgccgatc agggcaacga gcggtggcat ggccgccgcc
      661 tcaccgaccg ccagcacgac gcgggcggcc cagagttctc cgaggctgtg aacgaaggcc
      721 gtcgccagag cgctcgccga ccagaggaca agggcgcagg cgatccagcg ccagggggaa
      781 aagcgggcgg cgaccggcgc cagcaccaga ccggacactg cgaacatcac gccgaaggcc
      841 gtcccgtaga cgccgacgat ctggcctccg gtcgccccga gctgcgcgcc catgggatgg
      901 gccatgagca ccgcgaactg gcggtcggtg taggcgagga cgtagacaag gaacaaaagc
      961 agcgcatccg cgcgccacga cgtcccaggg gggcccgacg aaacgatctt gaccctacag
     1021 atctgccgaa ggcttggtca tcgggcgcca aactgcacta tcggcgctga aatgccgacg
     1081 tcataatacc atgttcgtct aatctcggtc agccaaccgc tctcatcatt cgggatcaag
     1141 ccgcgagatg ctcggaagtc aggcaatcga caccttcttc ctcggcgcga ctacgccggg
     1201 cctgtggccg agcgcgcttg aaaccattgc gcacgacctc caggccgacg gcgcgacgct
     1261 gatgagcggc aaggtgaatg cctcgcgggt ttccacctcc accggcatcg cggggttcgt
     1321 cgaagaatac ttcagcctcg ccgtcgcgca gttcgacagc cgggaggatc gggtcaatcc
     1381 gacgacgggc gacgggttcg tcggcgactt cgacacctat accgccgagg agatcgaccg
     1441 cgacccctac tatatcgact tcctgcggcc gcgcgggttc agctggcacg ccgtggcctg
     1501 ccttggcggt ggcgacagcc cgctcgtcct cagcctgaag cgccgctgga gccttggacc
     1561 gttccagcgc agcgagctgg atcagatctc gaccgtgctg ccctatttgc gcgccggcgc
     1621 ccacgcggcc tcggtggctc tgaatttccg ctcccaggac cacctggagg cgctgacggc
     1681 ggccggtcat ggcggcctgc tgctcaatcg ggaaggcgcc gtcgtcgcct tcaacgcgac
     1741 cgtggaactc ggcgacggcc tgtcgatcgt cgaaggccgc ctgagggccg cctatccctc
     1801 ggagcagggc ggtctcgacc gggccgtggc gatcgccgtg agccaggcgc cgccgagcga
     1861 attgccgagt ccgacgccgg cgatccttca ccggccctcc gggcgacgcc cgctgatcgt
     1921 gcgggtcgtg cggctgttcg acatcgcgcc caaccccgtg gcgtcagcgc gcgccgtggt
     1981 gagcatcgtc gacacggccg ccctgccgat cccggcggct tcgctgttgc gggaactgtt
     2041 cggcctgacc ccaaaagaga ccgaactggc ggtgctcctg ggatcggggc gctcgctcac
     2101 cgaagccgcc gatctctgcc acatcagcct gccgcacgcg cgccagcgcc tgaagatcgt
     2161 cttccagaag accgagacct cgcggcagag cgagcttgtg accctgctcc ttcgactcgc
     2221 ctgagaattc ccctgtgagt tgaaccttcg cgccccctcc cggatgggag tgtcgggcgg
     2281 ctttcgtccc gcgccatgat cttacggtag aggcccgcga ggactacgcg acgcgcgcct
     2341 gcaaccctgt tgtgagagat ggaccatggc gcgaattcgg acggcaatcc tggcggcggt
     2401 tgggctcgcg ggagccttgg cggcgacctc ggcgctagcc ggcgccacct tcacggacac
     2461 gaccttcaac ccggccgact atacgctcgg cgcgttcaag gacgcctccg tgaccgtgaa
     2521 cagctatggt cagacggcga caggcggcaa tcccggcgcg gccctgcagg ggttggcctc
     2581 cagcaccggc gtaaacgcgc agggcgtgct gctgaccgcc ctcgacaaca ccttcgtcta
     2641 tgatcccacg acgagcggcg cgatcacctc gctcgacgct tcgctcgacc ggttcgcgga
     2701 tttcaccaac ggcggcgccg tcagtctggt tggcagctac agcctgcgcg tgctggccga
     2761 ccaggacgga cagctctacc aggcgacctt cgtgttcggg ccgttcggcc agccgggcgg
     2821 cacatggaat tcgctgtcgc agacgggcat cctggccagc aacttcagca ccctcgacgc
     2881 cggcaacttc actggctccg gcgtggtggg cggcctgaac ttcggcggcg acgcgatcac
     2941 ctttggcttc gccatgcgcg cctcgggggc cgtcaacggc gacggctcgc cctc
//
LOCUS       DATAJL010000886         1593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_87782,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000886 DATAJL010000000
VERSION     DATAJL010000886.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87782"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..852)
                     /locus_tag="VHN39_16775"
     CDS             complement(<1..852)
                     /locus_tag="VHN39_16775"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2818049.1"
                     /translation="MYRPLLMSAAAAFAFTASQAFAQAVINFPPAGSHSFVALYEAGG
                     PPDVCVHVQCQIVGDPSVSTSMAPVTFLGPNPEFITGSGSTGPDAMHAFLSANVFAEV
                     DTAFDDTYTVHGGTAPFSITVTMNAHGTASTLPFSTNNIAIGSLTGIIGTFDINPTHL
                     LPTVDAFAQANSGLIDLQGPVPQTAQANLSVSYTRIVNPGDVFDLAYELETNIVGTLD
                     ASHTAEISFTLPDGVFLTAASGATFGAVTPPAGGVPEPASWALMIAGFGLAGAALRRR
                     GRSLLTAQ"
     gene            1037..>1593
                     /locus_tag="VHN39_16780"
     CDS             1037..>1593
                     /locus_tag="VHN39_16780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818050.1"
                     /translation="MLRALPGHLVAMAVFVGVLIFGVRAIGAALPTLNRDLVVGLGAV
                     YVAAWLGLIVITLIEAGLGRDARARWQRRNRWITWGGSADSILAYWLVAPYAALDLQL
                     VFLLFHIGIVTINVVASIDRPRGRGAGRFLPLALPASIAAFYATHWNPYAPALIVFAV
                     SYGFVAQALRETLQTAVDRANAARRT"
BASE COUNT          240 a          491 c          595 g          267 t
ORIGIN      
        1 ttgtgcggtg agcagggacc ggcctcgccg gcgcaaggcc gcgccggcca ggccgaaacc
       61 ggcgatcatc agggcccagg aggcgggctc cggaactccg cccgcgggcg gcgtgacggc
      121 gccgaacgtc gcgccagacg cggcggtgag aaacacgccg tccgggaggg tgaagctgat
      181 ttcggccgtg tggctggcgt caagggtgcc gacgatgttc gtctccagct cataggccag
      241 gtcgaacaca tcgcccgggt tgacgatgcg ggtgtagctg acgctgaggt ttgcctgcgc
      301 ggtctgcgga acgggacctt gcaaatcgat gaggccactg ttcgcctgcg cgaacgcatc
      361 gaccgtcggg agcaggtggg tcggattgat atcgaaggtt ccgatgatcc cggtgagcga
      421 gccgatcgca atgttgttgg tgctgaaggg aagggtgctg gccgtcccat gggcgttcat
      481 cgtcacggtg atcgagaagg gcgctgttcc gccgtgcacg gtgtaggtgt cgtcgaaggc
      541 ggtatcgacc tcggcgaaga cgtttgcgct gaggaaggcg tgcatggcgt cagggccggt
      601 cgatccggag ccggtgatga attcggggtt gggacccagg aaggtcaccg gagccatcga
      661 cgtgctcacc gaggggtcgc ccacgatctg gcactgcacg tggacgcaga cgtcgggcgg
      721 gccgccggcc tcatagaggg cgacgaagga gtggctgcca gccggcggga agttgatcac
      781 cgcttgagcg aacgcctggg acgcggtgaa ggcgaaggct gcggcggcgg acatcagcag
      841 ggggcgatac atgggcgaac tcctcgacag ggcgcgagga gccgcggtgt gcctgcccct
      901 cctgaataca actcaggcta gcgtggggcc gaggcggccg cccattggcc gaacggccta
      961 gcctgatggc ctagtccggt tgcggagttc gccgttcagg cgaaaatgcg gccaacgaac
     1021 cgggaggcgg acgaggatgc tgcgcgcgtt gccgggccat ctcgtcgcga tggccgtgtt
     1081 cgtcggagtc ctcatcttcg gggtgcgtgc gatcggcgcg gcgctgccga cgctgaaccg
     1141 cgacctggtc gtgggcctgg gggcggttta tgtcgccgcc tggctggggc tgatcgtcat
     1201 caccctgatc gaagccgggc tgggccgcga cgcgcgggcg cgctggcagc ggcgcaaccg
     1261 ctggatcacc tggggcggca gcgccgactc gatcctcgcc tactggctgg tcgcgcccta
     1321 cgccgcgctc gacctgcagt tggtttttct gcttttccat atcggcatcg tgaccatcaa
     1381 cgtcgtggcc tcgatcgacc gcccgagggg gcgtggggct ggccgcttcc tgccgctggc
     1441 cctgccggct tcgatcgccg ccttctacgc gacgcactgg aatccctacg ctccggcgct
     1501 gatcgtcttc gcggtgagct acggcttcgt ggcccaggcg ctgcgcgaga ccctgcagac
     1561 cgccgtcgac cgggccaatg ccgcgcgccg cac
//
LOCUS       DATAJL010000887         2803 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_100791,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000887 DATAJL010000000
VERSION     DATAJL010000887.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_100791"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..762)
                     /locus_tag="VHN39_16785"
     CDS             complement(49..762)
                     /locus_tag="VHN39_16785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818051.1"
                     /translation="MSQAENPMTLTFRCPRELEGLLPAPIPAAQGLPDWLKAMPASAF
                     SAMASGDDDTVKRCPPFIDAMTGGFLIPLICDLRVENGEFTWDNDLPAGGSVSFPRSP
                     IGFHDAGQVAGTPLFDADRFLIKFHNLWTIEAPPGYSLLFTHPVNRFDLPFTTLTGLV
                     DCDRYHDAWINFPAHWRDAQFEGVLPRGTPVAQVFPVKRETWVARTAAFTEAETQRAH
                     DLVNAIGREKGVYRRQFRA"
     gene            complement(780..1490)
                     /locus_tag="VHN39_16790"
     CDS             complement(780..1490)
                     /locus_tag="VHN39_16790"
                     /inference="COORDINATES: protein motif:HMM:NF024809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HEX2818052.1"
                     /translation="MMKLYSGDLSPYSARVRMQIYAKGITDITLERPADFGTPKFRER
                     LPIGRIPVLDIDGDMMPESEVIAEYLEAVYPEPSMLGATPRETAHIRTVARIGDVYLM
                     NNMFMLSPQSRAATRNEGIVELLGGQVVRNIKALDKLIGKDGFACCGRLTMADCALVP
                     GLFMVENVLPATGVDNPIPAATNVAAYWAAIQENEHAARTLAELHRGLEERRELIRSG
                     AFDKMMAAARAAQAAADA"
     gene            complement(1521..2243)
                     /locus_tag="VHN39_16795"
     CDS             complement(1521..2243)
                     /locus_tag="VHN39_16795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016657 - obsolete oxidoreductase
                     activity, acting on NAD(P)H, nitrogenous group as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HEX2818053.1"
                     /translation="MTSRADTALTFDDVVMGRRSIRGYKPDPVPRALIEEIIGLAMRA
                     PSSMNTQPWNFYIITGEPLDRIRAGNTERNLAGVPHSREFRTGQAFAGQHRERQIGVA
                     KQLFSAMGIAREDAAGRLDWVLRGFRQFDAPVCVIITYDKVLADSDDTPFDCGAVATA
                     LVNAAWSRGLGAVINSQGIMQSPVVREHAGIADDQVIMKSIALGWPDDSFPANAVVSE
                     RKSVDEAAVFVGFEDKGQTGQD"
     gene            complement(2354..>2803)
                     /locus_tag="VHN39_16800"
     CDS             complement(2354..>2803)
                     /locus_tag="VHN39_16800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818054.1"
                     /translation="FQKVSRVVRLTVALDFKLGRDAAREARVEAREAEAAEAETARQG
                     RLEAACAPPGPIAARKSRVSNLLNRLLWNECEGDSEEYEVLSDDLSARLDEAARSADF
                     ETLPVEVLTRRVISDMGLSGDFALSVCETGAGAAPASDRPPPSADTG"
BASE COUNT          425 a          955 c          957 g          466 t
ORIGIN      
        1 cccggcgcgg cggcgaaatt cctgcgcgcc gaaacggcct gaccggcctc aggcccggaa
       61 ctgccggcga tagacgccct tctcgcggcc gatggcgttg accagatcgt gcgcgcgttg
      121 cgtctccgcc tcggtgaagg ccgcggtccg cgccacccag gtctcccgct tgaccggaaa
      181 gacctgcgcg accggcgtgc ccctcggcag cacgccctcg aactgggcgt cgcgccagtg
      241 cgccgggaaa ttgatccagg cgtcgtggta gcggtcgcaa tcgaccaggc cggtgagcgt
      301 ggtgaagggc aggtcgaagc ggttgaccgg atgggtgaac aacagcgagt agcccggcgg
      361 cgcttcgatg gtccacagat tgtggaactt gatcaggaac cggtcggcgt cgaacagcgg
      421 cgtgccggcg acctggccgg cgtcatggaa tccgatcggc gagcgcggga agctgacgga
      481 gccgcccgcc ggcaggtcgt tgtcccaggt gaattcgccg ttctcgaccc tgaggtcgca
      541 gatcagcggg atcaggaagc cgccggtcat ggcgtcgatg aacggcgggc agcgcttgac
      601 cgtgtcgtcg tccccggacg ccatcgcgct gaatgcgctc gcgggcatgg ccttcaacca
      661 gtcgggcagg ccctgcgccg ccgggatcgg cgccggcaac agcccctcca gttccctcgg
      721 acagcgaaag gtcagcgtca tgggattttc ggcttgggac atcacactga cctcaggcct
      781 tacgcatccg cagccgcctg cgcggccctg gccgccgcca tcatcttgtc gaaggcgccg
      841 ctgcggatca gctcgcggcg ctcttccagg ccgcggtgca gttccgccag cgtcctggcc
      901 gcgtgttcgt tctcttggat cgcggcccag taggcggcga cgttcgtcgc tgccgggatc
      961 ggattgtcga cccccgtggc cggcaagaca ttctcgacca tgaagaggcc gggcacgagc
     1021 gcgcagtcgg ccatggtgag gcggccgcag caggcgaagc cgtccttgcc gatgagcttg
     1081 tcgagcgcct tgatgttgcg caccacctgg ccgcccagca gctcgacgat cccctcgttg
     1141 cgggtcgcgg cccggctctg cggcgagagc atgaacatgt tgttcatcag gtagacgtcg
     1201 ccgatgcggg ccacggtgcg gatatgggcg gtctcgcgcg gggtggcgcc cagcatcgaa
     1261 ggctcgggat agaccgcctc cagatattcc gcgatcacct cgctctccgg catcatgtcg
     1321 ccgtcgatat ccagcaccgg gatgcggccg atcggcagcc tctcgcggaa cttcggcgtc
     1381 ccgaaatccg ccggccgttc cagcgtgatg tcggtgatgc ccttggcgta gatctgcatg
     1441 cgcacgcgcg cggaataggg gctgaggtcc ccggagtaga gcttcatcat ggtcctggcg
     1501 tccctctttg cgcggcaggc tcaatcctgc cctgtctggc ctttgtcctc gaaacccacg
     1561 aacaccgcgg cctcgtccac ggacttccgc tccgagacca ccgcattggc cgggaagcta
     1621 tcatccggcc agcccagcgc gatgctcttc atgatcacct ggtcgtcggc tatgcccgcg
     1681 tgctcgcgca ccaccggcga ctgcatgatg ccctggctgt tgatcaccgc ccccagcccg
     1741 cgcgaccagg cggcattcac gagagcggtc gcgacggccc cgcagtcgaa gggcgtgtcg
     1801 tcgctgtcgg cgagcacctt gtcataggtg atgatcacac agaccggggc gtcgaactgt
     1861 cggaagccgc gcagcaccca gtccaggcgt cccgcggcgt cctcacgggc gatgcccatg
     1921 gccgagaaga gttgcttggc aaccccgatc tgccgctcgc ggtgctgacc ggcgaaggcc
     1981 tggccggtgc ggaactcccg cgaatgtggc acgcccgcca ggttgcgctc cgtattgccg
     2041 gcccggatcc ggtcgagcgg ttcgcctgta atgatgtaga agttccaggg ctgggtattc
     2101 atcgacgatg gcgcgcgcat cgccagaccg attatctcct cgatcagcgc cctcggaaca
     2161 gggtcgggct tgtagccacg gatgctccgg cgtcccatga ccacgtcatc gaacgtcagg
     2221 gcggtgtcgg cgcgtgatgt catcggcggg ttcctgtgag gtcgctcccg ctgggtacag
     2281 catagacatc ctgcgcgtaa ccggtgaggc ggcttgccgc ggacgccgat cagccggagc
     2341 ggcgaaggcc gacctagccg gtgtcggccg atggcggcgg ccggtcggac gccggcgcag
     2401 cgccggcccc cgtttcgcag acgctcaagg caaagtcgcc cgagagaccc atgtcggaga
     2461 tgacgcgacg cgtcaggacc tcgacgggca gcgtctcgaa gtcggcgctg cgggcggctt
     2521 cgtcgaggcg ggccgagagg tcgtcggaca gcacctcgta ttcctcgctg tcgccttcgc
     2581 actcgttcca gaggagacgg ttgagcaggt tgctgacgcg ggacttgcgc gccgcgatcg
     2641 gcccgggcgg ggcgcaggcg gcctcgaggc ggccttgtcg ggcggtctca gcttctgccg
     2701 cctcggcctc gcgggcctca acccgcgcct cgcgcgccgc atcccgcccc agcttgaagt
     2761 ccagcgccac ggtcaggcgc accacgcggg agaccttctg gaa
//
LOCUS       DATAJL010000888         1677 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74219,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000888 DATAJL010000000
VERSION     DATAJL010000888.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74219"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            376..1575
                     /locus_tag="VHN39_16805"
     CDS             376..1575
                     /locus_tag="VHN39_16805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2818055.1"
                     /translation="MHIDLLSPASFAAGQPHDQYRWLREHAPVRWHDEPNGPGFWAVT
                     RHADVWAVDRDFQAYSSEPTIMITDPLEGSGQGFGPYKMMLMMDPPEHTAFRKLIRQE
                     FTLPAARLREERIQALARQIVDAVIEKGECDFVGDVAGEMPSFVIAELMGLPLEDGRE
                     LYKLTETIHTAPEALPPGAGGAAVAKMFEYGSGVIAAKRARPGDDLASRLLACELDGR
                     KLEDVEFLLFFLLLVDAGGDTTRNLLSGGLLALMENPDQFAWLMADLPGRLPSAREEL
                     LRWTSPVIYMRRTARHDTELAGQTIREGDKVVMYFGAANRDPAAFERPEVLDLSRPEN
                     PHIAFGTGPHGCLGQHIARIEIDAMLSEVLTRMTGFELAAAPEWLASNFISGPRTMPL
                     RFRRRSP"
BASE COUNT          252 a          565 c          589 g          271 t
ORIGIN      
        1 gcctggggtg gatgttcgat gggctgcggg cgggcgaacg ctggcccgtt cctcctccca
       61 caaggggcgg aggaccacgc aaaaaggccg cccctgtgtt gaaacaattc gtgaacagcc
      121 aaatttaggc catggcgggc gccggcctta ccctggacgg tttgacgagc gggctcgggc
      181 ccgcgggtcg tggtctttct caagtccgga ccggtcggcg cggcgcagcg ccggcccttt
      241 aggaagggtg gggagtctat tgcgatgggg ccaactttgg catggggcga ggcttcgaac
      301 gaccgccccc tcgggcttgc ttgccgcttc gtcaaggcgc gctcaatctc cgcccaacgc
      361 ccgggagcca gccccatgca catcgacctg ttgtcgccgg cgagcttcgc ggccggccag
      421 ccgcacgacc agtaccgctg gctgcgcgag catgcgccgg tgcgctggca tgacgagccg
      481 aacgggccgg gcttctgggc ggtgacccgc cacgccgacg tctgggccgt ggaccgggac
      541 ttccaggcct attcctcgga acccaccatc atgatcaccg acccgttgga ggggtcaggg
      601 caggggttcg gcccctacaa gatgatgctg atgatggatc cgccggagca cacggcgttc
      661 cgcaagctga tccgccagga gttcaccctg ccggccgcgc ggctgcggga agagcgtatc
      721 caggcgctgg cccgccagat cgtcgatgcg gtgatcgaga agggcgagtg cgacttcgtg
      781 ggcgacgtgg cgggcgagat gccgtccttc gtgatcgccg agctgatggg cctgccgctg
      841 gaggatgggc gcgaactcta caagctgacc gagaccatcc acaccgcgcc cgaggccctg
      901 ccgcccggcg ccggcggggc ggcggtggcc aagatgttcg aatatggctc cggcgtgatc
      961 gcggcgaagc gggcgcggcc cggtgacgac ctggcctcgc ggctgctggc ctgcgagctc
     1021 gacgggcgaa agctcgagga cgtggagttc ctgctgttct tcctgctgct ggtggacgcc
     1081 ggcggcgaca caactcgcaa cctcttgtcc ggcggcctgc tggcgctgat ggaaaacccg
     1141 gatcagttcg cgtggctgat ggccgacctg ccggggcggc tgccctcggc gcgggaggag
     1201 ctgctgcgct ggaccagtcc ggtgatctac atgcgccgca ccgcccgtca cgacaccgaa
     1261 ctggccggcc agaccatccg cgagggcgac aaggtggtca tgtacttcgg cgccgccaac
     1321 cgcgacccgg ccgccttcga gcggcccgag gtcctggacc tttcgcggcc ggagaacccg
     1381 catatcgcct tcggcaccgg cccgcacggg tgcctcggcc agcacatcgc ccgcatcgag
     1441 atcgacgcca tgctgagcga ggtcctgacc cggatgaccg gcttcgagct ggccgcggcg
     1501 ccggagtggc tggcgtcgaa cttcatctcg ggtcccagga ccatgcccct caggtttcgc
     1561 cgccgctcgc cctgaacagg cttggccatt gcgttgacaa ctccgggttg actgccccct
     1621 atgcgatctc gccggggggc ccagtatgcc gctgagtaat gagaccgtgt cggtcgc
//
LOCUS       DATAJL010000889         2264 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74313,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000889 DATAJL010000000
VERSION     DATAJL010000889.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74313"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1076
                     /locus_tag="VHN39_16810"
     CDS             <1..1076
                     /locus_tag="VHN39_16810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEX2818056.1"
                     /translation="SAWLPAPNEAKGGEPVIAQKPVRPAPAGSVVEAVARAIKAAKNP
                     VVLIGGQACLAAGVTEAARLQAAGVTVYSDTFIARTPRGAGAFAPKRMPYFGEMALAE
                     LEGVDLMVYAGTAMPVAFFAYPNRPSVLVPEGCKTLTLVERTEDAIAGLAALADALAA
                     PKEGPTQPLKLPEAAPTGGLNAYTVGASIARHMPEGAIVCDDSVTSGAGVAAAGATAR
                     PHEVLALTGGAIGIGLPLAVGAAVAAPDRKVVSLNGDGAAMYTIQSLWTMARENLDIT
                     VVVFANNSYRILNIEMTRTGAGEAGPQAAKLLGLGDPSIDWVPLAKGLGLPAVRCTTA
                     EEFEKAFAGAMAQRGPMFIEAAI"
     gene            complement(1154..>2264)
                     /locus_tag="VHN39_16815"
     CDS             complement(1154..>2264)
                     /locus_tag="VHN39_16815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818057.1"
                     /translation="TGTLGGKVYEVACGEGSVGFIAMANVTGPPVLLSCVLNNYPADM
                     SAAPPNPCILPTNADLRPAMVAFAKKAKVPCDPDRIRGIGANASSTFYEVSCPDGAGY
                     IVIGASSPLDVGKPATMANCLAYDATDTALKCMLNPPAKRLAAEDHIASLANKCEPKD
                     RRYIGLLTDNTEGYEFACGDGKGYIYKINSTGAVAETLDCAKVSAGNCTLTDTRAATA
                     EQAGLYSKLAKNAGSTCQVTKYAIFPTAGDKEVVEMVCGDGAGAIGMFPATGKGMVLD
                     CGHALVAGYKCTLGKVDYAGLTADLRKFDKKECTVSSVGQPLKAPDGTIRLEVACSDG
                     LPGYMIQFADPQNPKEAVACSFAGNCVLPTNKKKG"
BASE COUNT          344 a          788 c          775 g          357 t
ORIGIN      
        1 actccgcctg gctcccggcc cctaacgagg caaagggggg cgagccggtg atcgcccaga
       61 agccggtgcg cccggccccc gccggctcgg tggtcgaggc cgtcgcccgc gccatcaagg
      121 ccgccaagaa ccctgtcgtc ctgatcggcg gccaggcctg cctcgcggcc ggggtcaccg
      181 aagcggcccg tctgcaggcc gcgggcgtca ccgtctactc agacaccttc atcgcccgca
      241 cgccgcgcgg cgcaggcgcc ttcgcgccca agcgaatgcc gtacttcggc gagatggcgc
      301 tggccgagct cgagggcgtc gacctgatgg tctacgccgg caccgccatg ccggtggcgt
      361 tcttcgccta tccgaaccgt cccagcgtcc tcgtccccga gggctgcaag accctgaccc
      421 tggtcgagcg gaccgaggac gcgatcgccg ggctcgccgc cctggccgac gccctggccg
      481 ccccgaaaga aggccccacc cagccgctga agctgccgga ggccgcgccc accggcgggc
      541 tcaacgccta tacggtcggc gcgtccatcg cccggcacat gcccgaaggc gcaattgtct
      601 gcgatgactc ggtcacctct ggcgccggcg tggccgccgc cggggctacc gcacggccgc
      661 acgaggtatt ggcgctcacc ggcggggcga tcggcatcgg cctgccgctg gcggtgggcg
      721 ccgcagtggc cgcgccggac cgcaaggtgg tctcgctgaa cggcgacggg gcggcgatgt
      781 acaccatcca gtcgctctgg acgatggcgc gggagaacct cgacatcacc gtcgtggtct
      841 tcgccaacaa cagctaccgc atcctcaaca tcgaaatgac ccgcacgggc gcgggcgagg
      901 ccggccccca ggccgcaaag ctgctcggcc tgggcgatcc ctcgatcgac tgggtcccgc
      961 tggccaaggg cctgggcctg ccagccgtgc gctgcaccac cgccgaagag ttcgaaaagg
     1021 ccttcgccgg cgccatggcc cagcgcggcc cgatgttcat cgaagccgcg atctgaatca
     1081 aagaggcccg cgggtcaccc cgcgggcctc tcagggcctc cgcccccgtt tgccgataag
     1141 ggggtgaagg gcgctagccc ttcttcttgt tggtcggcag gacgcagttg ccggcgaagc
     1201 tgcaggcgac ggcctccttc ggattctgcg gatcggcgaa ctggatcatg tagcccggca
     1261 ggccatcgga gcaggcgacc tccagccgga tcgtgccgtc aggcgccttc agcggctgac
     1321 cgacgctgga gacggtgcac tccttcttgt cgaacttgcg aaggtccgcc gtcagcccgg
     1381 cgtagtccac cttgcccagc gtgcacttgt agccggcgac cagggcatgg ccgcagtcga
     1441 ggaccatgcc cttgcccgtg gccgggaaca tgccgatggc gccggcgccg tcgccgcaga
     1501 ccatctccac gacctccttg tcgccggctg tcgggaagat cgcatatttc gtgacctggc
     1561 aggtcgagcc cgcgttcttg gcgagcttgc tgtagaggcc ggcctgctcg gcggtcgccg
     1621 cgcgggtgtc ggtgagcgtg cagttgccgg cgctgacctt ggcgcaatcg agcgtctcgg
     1681 cgacggcgcc ggtggaattg atcttgtaga tgtagccctt gccgtcgccg caggcgaatt
     1741 catagccttc ggtgttgtcg gtcagcaggc cgatgtagcg acgatccttc ggctcgcatt
     1801 tgttggcgag cgaagcgata tgatcctccg ccgccaggcg cttggcgggc gggttgagca
     1861 tgcacttcaa cgcggtgtcg gtcgcgtcat aggccaggca attggccatg gtcgccggct
     1921 tgccgacgtc gagcggcgag gaggcgccaa tgacgatata gcccgcaccg tccgggcagg
     1981 agacctcgta gaaggtgctc gacgcgttcg cgccgatgcc acggatacgg tcggggtcgc
     2041 aaggaacctt ggccttcttt gcgaacgcca ccatggccgg acgcaggtcc gcgttggtcg
     2101 gaagaatgca gggattggga ggcgccgccg acatatccgc cggatagttg ttgagcacgc
     2161 agctcagcag gaccggcggg ccggtgacat tggccatggc gatgaagccg acgctgccct
     2221 caccgcaggc gacttcatag accttgccgc ccagggtgcc ggtc
//
LOCUS       DATAJL010000890         1835 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74402,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000890 DATAJL010000000
VERSION     DATAJL010000890.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1835
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74402"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..526
                     /locus_tag="VHN39_16820"
     CDS             <1..526
                     /locus_tag="VHN39_16820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2818058.1"
                     /translation="ALSMAVGPKGKVYAEMPPEVSKLHPEVMGLLNNIAADPKYANVE
                     LVTGPIDKPGLPGKLDAVFIRQNYHDLHDKFMGPADVAAFNRNVFAALKPGGIYVVLD
                     HAAVAGSGLGATEGLHRIDIAAVKAEVLAAGFKLDGESAIFANPADDHTKMVFNPAVR
                     GKTDQFLLRFKKPK"
     gene            630..824
                     /locus_tag="VHN39_16825"
     CDS             630..824
                     /locus_tag="VHN39_16825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818059.1"
                     /translation="MSVSKDRNAAPANETPDAAELADGQLDAVSGGGAAVKNPTVDLT
                     VNQQKGSEKAAAAADALIRG"
     gene            complement(821..>1835)
                     /locus_tag="VHN39_16830"
     CDS             complement(821..>1835)
                     /locus_tag="VHN39_16830"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX2818060.1"
                     /translation="PLPPWPEPDTFELREEPILAPGPGQALTRTIYVSLDPYQWGYKK
                     RGAEPPGTPCHARTVSQVVESRIEGLAPGDFVFNTNGWAEMGLMGEGVARPGYMIPRK
                     LDPAQGRISQAVGVLGMLGLTAYGGMILQCNPKPGDTAVVSAASGGVGQIAGQLARLK
                     GARVVGIAGKPEKCRFVTEELGFDACVSHLSPTFAEDLRAACPTGVDVYFENVGGTVF
                     DAVLPLFNEGARMTICGLIASYGDAEGTDARAALMARGKPTFDARHVTVRDLFVGDYV
                     KDHHAEMLAFVGPHVAAGDIKYREDIREGLETIPAAFAEMLKGGNFGKMLVRVSPDPT
                     RPA"
BASE COUNT          308 a          582 c          670 g          275 t
ORIGIN      
        1 ggcgctgagc atggcggtgg gtccgaaggg caaggtctat gcggagatgc cacccgaggt
       61 cagtaaactc catccggagg tgatgggcct gctgaacaac atcgccgccg acccgaagta
      121 cgccaatgtc gagctggtga ccgggccgat cgacaagccg gggctgcccg gcaagctgga
      181 cgccgtcttc atccgccaga actaccatga cctgcacgac aagttcatgg gcccggccga
      241 cgtggcggcc ttcaacagga acgtcttcgc cgcgctcaag ccgggcggga tctatgtggt
      301 gctggaccat gcggccgtgg ccggatcggg gctcggcgcc accgagggcc tgcaccggat
      361 cgacattgcc gcggtgaagg ccgaggtgct ggcggcgggc ttcaagctcg acggcgagag
      421 cgcgatcttc gccaaccctg ctgacgacca caccaagatg gtgttcaacc cggcggtgcg
      481 gggcaagacc gaccagttcc tgctgcggtt caagaagccg aagtagggct gcatctgtcc
      541 gccggggttt ttcgtattaa ggttcgttga ccgtcgttgg tcaggccgca tcgcggcgaa
      601 cgcgccgcga tgcagaggaa aggaagacca tgtccgtttc caaagaccgg aatgccgctc
      661 ccgcgaacga gaccccggat gccgccgaac tggccgacgg ccaactggac gcggtgtcgg
      721 gcggcggcgc ggccgtgaag aacccaacag tggacctcac cgtgaaccag cagaagggtt
      781 ccgaaaaggc cgccgccgcg gccgacgccc tgatccgggg ctaggccggc cgcgtcgggt
      841 ccgggctgac gcgcaccagc atcttgccga aattcccgcc cttgagcatc tcggcgaagg
      901 cggcggggat ggtctccagg ccctcgcgga tgtcctcgcg gtacttgatg tcgccggcgg
      961 ccacgtgcgg gccgacgaag gccagcatct cggcgtggtg gtccttgacg tagtcgccca
     1021 cgaagaggtc gcggacggtg acgtggcggg cgtcgaaggt gggtttgcca cgggccatca
     1081 gggcggctcg ggcgtctgtg ccctcagcgt cgccgtagga ggcgatgagg ccgcagatgg
     1141 tcatgcgggc gccctcgttg aagagcggca ggacggcgtc gaagacggtg ccgccgacat
     1201 tctcgaaata gacatcgacg ccggtggggc aggcggccct caggtcctcg gcgaaggtgg
     1261 ggctgaggtg ggagacacag gcgtcgaaac cgagctcctc ggtgacaaag cggcacttct
     1321 caggcttgcc ggcgatgccg acgacgcggg cgcccttcag acgggcgagc tggccagcaa
     1381 tctggccgac gccgccggag gccgcggaga ccacggcggt gtcgccgggt ttcggattgc
     1441 actgcaggat catgccgccg taggcggtga ggcccagcat gcccagcacg ccgaccgcct
     1501 gggagatgcg gccctgggcc gggtcgagct tcctggggat catgtagccg ggacgggcga
     1561 cgccttcgcc cataaggccc atctccgccc agccgttggt gttgaagacg aagtcgccgg
     1621 gagccaggcc ctcgatgcgg ctctcgacga cctggctgac cgtccgggcg tggcagggcg
     1681 tccccggcgg ctccgcgccg cgcttcttgt agccccactg gtaggggtcg aggctgacgt
     1741 agatggtccg cgtgagcgcc tgaccggggc caggcgcgag gattggctcc tcccgcagtt
     1801 caaaggtatc cggctccggc cagggcggca ggggc
//
LOCUS       DATAJL010000891         1719 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74418,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000891 DATAJL010000000
VERSION     DATAJL010000891.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74418"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1719
                     /locus_tag="VHN39_16835"
     CDS             <1..>1719
                     /locus_tag="VHN39_16835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HEX2818061.1"
                     /translation="VGVVETHGRKDTQSLLRGLEVMPRRPIAYRERTLLEFDLDAAIA
                     RKPGLLLVDEYAHSNAPGSRHPKRWQDVEELLAAGLDVWTTLNVQHLESLVDVVWKIT
                     GVRQRETVPDGALSRADEIELIDITPAELRERMAEGKVYLGETARVASERFFKTENLT
                     ALRELALRRAAQTVDDQLIHAMKRAGVEGPWAAGERILVLVGPDAMAGALVRAGRRLS
                     DMMMDAPWTVAHVERPNIAPPSPEASQKLREALKLADQLGGATVALSGDDLVESVLDY
                     ARRNNLTQIVVGKTRHRSRNPFRRNLITALLEETRGAALHVITESADGDAIPAPVRRA
                     ARVFPWRGHLGALSSVAVSGGVAYFVDKYAQSANLAMVFMLSVLVSGLAFGLWPAVTA
                     ATAAALVYNFFFLEPRLTFYIGHPSDVFTFAVFFAVAMATGWLTGRVRDQARAVSRRA
                     SGIAAVLVATRRLSAAARAEEAATALAEQLAAATSSAAVVLTPVGEDIAIAAASPPLD
                     SLSAGDMAAARWAWEKGEAAGAGTGTLPNAGWTFRPLQGVKSRAGVVGVEPKAVATED
                     GERFVSA"
BASE COUNT          240 a          627 c          604 g          248 t
ORIGIN      
        1 gtgggcgtcg tcgagaccca tggccgcaag gacacccaaa gcctgctgcg cggcctggag
       61 gtcatgcccc gccggcccat cgcctaccgc gaacgcactc ttctggaatt tgatctcgac
      121 gcggccatcg cccgcaagcc cggcctgctg ctggtcgacg aatacgccca ttccaatgcc
      181 ccagggtcgc gccacccgaa gcgctggcag gacgtggagg agctgttggc ggccggactc
      241 gatgtctgga cgacgctgaa cgtccagcac ctggagagcc tggtggacgt ggtctggaag
      301 atcaccgggg tgcgccaacg cgagaccgtg ccggatggcg cgctctcccg cgccgacgag
      361 atcgaactga tcgacatcac cccggccgag ctccgcgagc gcatggccga gggcaaggtc
      421 tatctgggcg agaccgcccg ggtcgcttcc gagcggttct tcaagaccga gaacctcacg
      481 gccttgcgcg agctggcgct gcgccgcgca gcccagacgg tggacgacca gctgatccac
      541 gccatgaagc gcgccggggt cgagggcccc tgggcggctg gcgagcggat cctggtgctg
      601 gtcggccccg acgccatggc cggcgccctg gtgcgggcgg gccgcaggct ctccgacatg
      661 atgatggatg cgccctggac ggtggcgcac gtcgagcggc ccaatatcgc gccgccgtcg
      721 cccgaggcgt cgcagaagct gcgcgaggcc ctgaagctcg ccgaccaact gggcggcgcc
      781 acggtggcgc tcagcggcga cgacctggtg gagagcgtcc tcgactacgc ccggcgcaac
      841 aacctgaccc agatcgtggt cggcaagacc cgccaccgca gccgcaatcc cttccgccgc
      901 aacctgatca ccgccttgtt ggaggaaacg cgcggggcgg ccctgcacgt gatcaccgag
      961 tcggccgacg gcgatgctat ccccgcgccc gtacgacggg cggcgcgggt ctttccgtgg
     1021 cgcggtcacc tgggggctct gtcctcggtg gccgtcagcg gcggcgtcgc ctacttcgtc
     1081 gacaaatacg cgcagagcgc caacctcgcg atggtgttca tgctgagcgt gctggtctcc
     1141 ggcctggctt tcggcctctg gcccgccgtg accgccgcaa ccgccgcggc gctggtctac
     1201 aacttcttct tccttgagcc gcggctgacc ttctacatcg gccatccctc ggacgtgttc
     1261 accttcgcgg tgttcttcgc cgtcgccatg gccaccggtt ggctgaccgg ccgggtgcgc
     1321 gatcaggccc gcgcggtctc caggcgggcc tcgggcatcg ccgcggtgct ggtggcgact
     1381 cgccggctct ccgccgccgc ccgggctgag gaggcggcca cggcgctggc cgaacagctc
     1441 gccgccgcca ccagcagcgc cgccgtcgtg ctgacgccgg tgggcgagga catcgccatc
     1501 gccgcggcct ctccgccgct ggacagcctc tcggccggcg acatggccgc ggcgcgctgg
     1561 gcctgggaga agggggaggc ggccggggcc ggcaccggca ccctgccaaa cgccggctgg
     1621 accttccggc cgctgcaggg cgtcaagtcg cgcgccggcg tggtcggagt cgagcccaag
     1681 gccgtagcca ccgaggacgg cgagcgcttc gtcagcgcc
//
LOCUS       DATAJL010000892         2219 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88021,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000892 DATAJL010000000
VERSION     DATAJL010000892.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2219
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88021"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..661)
                     /locus_tag="VHN39_16840"
     CDS             complement(<1..661)
                     /locus_tag="VHN39_16840"
                     /inference="COORDINATES: protein motif:HMM:NF016301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HEX2818062.1"
                     /translation="MAWDACAQCGAVQASKAAAVRRCRVCRSELERTTGRSLDAALAL
                     SAATLLLLIPANLAPFLTASVLGAVRQSRLISGPAELWREGWPALAGLVAAVTILAPL
                     LRFGLLTAVLGALRLGRRDHWIGPAFRWADRLQPWAMADVAVLALWIAYARLSATVPT
                     RLGVGGACLVGAGLLTLFVRATLNKPDIWRRIRAQRPWRRWRACRGCAACGYLAPAPD
                     VG"
     gene            complement(720..1175)
                     /locus_tag="VHN39_16845"
     CDS             complement(720..1175)
                     /locus_tag="VHN39_16845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818063.1"
                     /translation="MSKTLLGAAVAAALFASGVAVPASRADDAPATAPDATLTLAGGA
                     VAAGIGYVWGSGQLDYQGAPHPVKVSGLSVVDVGAAKISASGSVYHLKALKDFNGAYT
                     AFAAGATIAGGGGVAYLKNQNGVVIKLNSTSTGLRFNLSANGVTLKVAS"
     gene            1659..>2219
                     /locus_tag="VHN39_16850"
     CDS             1659..>2219
                     /locus_tag="VHN39_16850"
                     /inference="COORDINATES: protein motif:HMM:NF014795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HEX2818064.1"
                     /translation="MSQKVAKVIVDTLQAAGVRNCYGIVGDTLNVIAGYIEKSEIDWV
                     HMRHEEAGAFAAQAEALLMDRLTAMAGTCGPGSLHFINGLYEARRNRAPVILLATQIP
                     TAELGFDFIQEVDFLSVFRDSAVFCDMIHTPEQALRKTVRACQTAIAKRGPAVLIVPV
                     DIAKAQMHDTMPFKVEVPRPVLRPSDT"
BASE COUNT          352 a          759 c          812 g          296 t
ORIGIN      
        1 gcccgacatc tggcgccggc gcaaggtagc cgcacgccgc gcagccccga caagcgcgcc
       61 aacggcgcca gggccgctgg gcccggatcc ggcgccagat gtcgggcttg ttgagggtgg
      121 cgcgcacaaa gagcgtcagg aggcccgcgc ccaccaggca ggcgcccccg acgccgaggc
      181 gggtcggcac ggtggcgctc agccgagcgt aggcgatcca cagggcgagc actgcgacgt
      241 cggccatggc ccagggttgc aggcggtcgg cccagcggaa ggccggtccg atccagtggt
      301 cgcggcggcc gagccgcagg gcgcccagga ccgcggtgag caggccaaac cgcaggagcg
      361 gcgcgaggat ggtcactgcg gcgacgagac cggccagcgc tggccaaccc tcccgccaga
      421 gttcggcggg gccggaaatc agccggcttt ggcgcaccgc gccgaggacc gaggcggtca
      481 ggaacggcgc gaggttggcg gggatcagca acagcagggt ggctgcgctc aacgccagcg
      541 ccgcgtccag gctgcgcccc gtcgtccgct ccaactcgct tcgacagacc cggcagcgcc
      601 ggacggccgc cgccttggag gcttgcacgg cgccgcattg ggcgcaggcg tcccaggcca
      661 tggccgctgg ggcaggccag ttcagggcgg agacccgcac ggcgccgggg agggcggcgt
      721 caggacgcca ccttcagggt gactccgttg gccgacaggt tgaagcgcag gccggtgctg
      781 gtgctgttca gcttgatgac cacgccgttc tggttcttga ggtaggcgac cccgccgccg
      841 ccggcgatcg tcgccccggc cgcaaacgct gtgtaggcgc cgttgaagtc cttcagcgcc
      901 ttaaggtgat agaccgagcc gctggcgctg atcttggctg cgccgacatc gacgaccgaa
      961 agcccggata ccttcaccgg gtgcggcgcg ccctggtagt ccagctggcc ggagccccag
     1021 acatagccga tgccggccgc cactgcgccg ccggcgaggg tgagagtcgc gtcgggagcc
     1081 gtggcagggg cgtcgtcggc tcgggaagcc ggaacggcca cgccgctggc gaagagggct
     1141 gcggccacgg cggcgccgag caaggtcttg gacatggcag gtctccaggt ttgatcgcgt
     1201 catcttggcc gctcgcgggc gcgcgggctt gtagcggcct gacctggcga gggtcgcctt
     1261 gccggaaaat cgtcggacct ttggcaagag gaaggggaga ccggcggttc gactcgccgg
     1321 cctcccccaa ggtgcgcatc gtcggggaac gaggcgcatg gggatgcggg ggcccggcgc
     1381 gcacttgcga aggtggacgt ctcgacaggg ggagggggtc tgccccagcg tccgcaaacc
     1441 tagggcttcg gcggcgcgcg atctttgacc caggcgccgc gacttggcgg atggcgcctc
     1501 ctcggcgcat cggggtccgt tctccaggcg gttgcggcga gccgggctca caggagcttg
     1561 caactcgtaa cgcgcgcgcg acggcgaaat gcgcatccta accagacggc ggagccgtcc
     1621 gcattgtgac cggcccgtcc gacccaggag agcgcgccgt gagccagaaa gtcgccaagg
     1681 tcatcgtcga caccctgcag gccgcgggcg tccggaattg ctacggcatc gtcggcgaca
     1741 ccctcaatgt catcgccggc tacatcgaaa agagcgagat cgactgggtg cacatgcgcc
     1801 acgaggaggc cggcgcattc gccgcccagg ccgaggcgct tctgatggac cggctcaccg
     1861 ccatggccgg cacctgcggc ccgggttcac tgcacttcat caacggcctc tacgaagccc
     1921 gccgcaaccg cgccccggtg atcctgctgg ctacgcagat cccgaccgcc gaactcggct
     1981 tcgatttcat ccaggaggtg gatttcctgt ccgtgttcag ggacagcgcg gtgttctgcg
     2041 acatgatcca tacgcccgag caggcgctgc ggaagaccgt gcgcgcctgc cagacggcga
     2101 tcgccaagcg cggccccgcg gtgctgatcg tgccggtgga catcgccaag gcgcagatgc
     2161 acgacaccat gcccttcaag gtggaggtcc cgcgcccggt cctgcgcccg agcgacacc
//
LOCUS       DATAJL010000893         4228 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74451,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000893 DATAJL010000000
VERSION     DATAJL010000893.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4228
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74451"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1298
                     /locus_tag="VHN39_16855"
     CDS             <1..1298
                     /locus_tag="VHN39_16855"
                     /inference="COORDINATES: protein motif:HMM:NF014717.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX2818065.1"
                     /translation="VYPALVLARFRAASVLASARAPGGGRTGARLREALAVGQFAIAI
                     CLMICTAVIFAQMQYLRAAEVGFRRDGLLIVRGLGDQQVAPQMRTIVEAFRHTPGVLA
                     VTASDRHPDPDSNSNTNVELVGNPEIKPSLLYERIGSDYAQTYGLKLVAGRVLDERHG
                     ADDRAGVTYDQIADAGRGINTMLNASAARQLGFTDPAKALGRQMIFSRSDKGNRLLAT
                     IVGVVADVRFDSPRLPPAPQFYLLNSHLGPANAPSSWAAAVRVRDGTQEEVRQRLEQV
                     WRSLAPGAPFQGETVQVTMKPFYDSDARRGQLFAVGAVLSAAIACLGLYGLAAFNTSR
                     RVKEIGIRKTLGASTADVLRLLVGEFLRPVLWANLIAWPVAYVAMRWWLAGFDQRIDL
                     NPAYFLVPSVAAIMVAVLTVAEQAVRVSRAEPSRALRYE"
     gene            1428..>4228
                     /locus_tag="VHN39_16860"
     CDS             1428..>4228
                     /locus_tag="VHN39_16860"
                     /inference="COORDINATES: protein motif:HMM:NF012471.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M14 metallopeptidase family protein"
                     /protein_id="HEX2818066.1"
                     /translation="MKSALFAGVALALVLQGGAFAQTAPHITTPKQAFNGSEPGDDYF
                     LANYDQTTAYWKKLASESDRMKLVSLGKSVEGRDIWMAIVSSPENLKNLERYRDIDRR
                     LALAKGLTDTEAHALAREGKAMVWIDGGLHASEVSSAQSQIQIVYEMLSKTDPETMRL
                     LNDDITLFVLPNPDGQQLVADWYMRKADPKARSLADLPVIYQRYVGHDNNREYYMSNM
                     PETTAMNRAMFKDWFPQIVYNEHQTGPLGAVVFIPPFRNPSNYHFDPLVLSELDGVSA
                     AMHSRLIAEDKPGSAERSAAPYSTWFNGGLRTTGYFHNVVGILTEIIGSPTPMQLPFV
                     PARQLSNQDELYPVPPQTWHFRQTVEYVKSMNRAVMDYASKNREDVLYNRYLMGRNSL
                     KRGAEDAWTVTPKRVAAVEAAAKANPGAPATRGGDGLSGNGDFAAIVDPKLFDTVLHD
                     PAERDPRGYILPLDQPDLPTTVKFLNALIKSGIVVDKATAAFTVKGKTYPAGTYVVMC
                     DQAYRPHVLDMFEPQDHPQDFEFPGGPPIKPYDITGYTLAFQMGVKFDRVLDGFSGPF
                     QPVTEVMAPPPGKVVGSGGAGWLLDHRTNNSFTLTNRLQKAGVPVSWLKTPVTAAGQT
                     FGPGAVWVPATGPARAIVQKSVVDLGVNAYAMGSAPRGEKLALKAPRIGIVDTYGGLI
                     TSGWMQWVVEQFEFPYTLVYAPELDAGNLNAKYDVLLFVDGAIPGGDSRYGGGGGGGG
                     RGLPKAEEVPEKYRKMLGRITQATTLPQVKAFVQNGGTAVAVGGSTRLGEYLGLTENP
                     LVQTGKDGKPQPLPSSKFYIPGSILLGKVDNKDPLGYGFGETVDLFFDSSPVFKIKSG
                     DAKPVSWFEGADPLLSGWAWGQKALDGTASIVDASFGSGKVFLLGPEVAMRGQAYGSF
                     KFVFNALEYGPAVGGKPAKA"
BASE COUNT          702 a         1464 c         1402 g          660 t
ORIGIN      
        1 gggtctatcc ggcgttggtg ctggcgcgct tccgcgccgc ttcggtcctg gcctcagcgc
       61 gggcgcccgg cggcgggcga accggggcgc ggctgcgcga ggccttggcg gtgggccagt
      121 tcgccatcgc catctgcctc atgatctgca ccgcggtgat cttcgcccag atgcagtatc
      181 tgcgcgccgc cgaggtcggt ttccggcgcg acgggctcct gatcgtgcgg ggcctgggcg
      241 accagcaggt ggcgccgcag atgcgcacca tcgtcgaagc ctttcgccat acgccgggcg
      301 tgctcgcggt gacggcctcg gaccgccacc cggacccgga ctccaacagc aacaccaatg
      361 tggaactggt ggggaatccc gagatcaagc cctcgctgct gtacgaacgg atcgggtccg
      421 actacgcgca gacctacggc ctcaagctgg tcgcgggccg ggtgctggac gagcgccacg
      481 gcgcggacga ccgcgccggc gtcacctacg accagatcgc cgacgctggc cggggcatca
      541 acacaatgct caacgccagc gccgcccgcc agctcggctt caccgatccg gccaaggcgc
      601 tgggccggca gatgatcttc agcaggagcg acaagggcaa tcggctgctc gccaccatcg
      661 tcggcgtggt cgccgacgtc cgcttcgact cgccccgcct gccgccggcg ccgcagttct
      721 acctcttgaa cagccatctc gggccagcga acgcaccgag cagctgggcc gcggcggtgc
      781 gtgtgcgtga tgggacgcag gaggaggtcc gccagcggct ggagcaggtc tggcgcagtc
      841 tcgcgcccgg cgcgccgttc cagggcgaga cggtgcaggt gaccatgaag ccgttctacg
      901 acagcgacgc gcggcgcgga cagctgttcg cggtcggcgc ggtgctgtcg gccgcgatcg
      961 cgtgcctggg cctctatggg ctggcggcgt tcaacaccag ccgccgggtc aaggagatcg
     1021 gcatccgcaa gaccctgggc gcctccaccg ccgacgtcct gcgcctgctg gtcggcgagt
     1081 tcctgcgccc ggtgctgtgg gccaacctga tcgcctggcc ggtggcctat gtggccatgc
     1141 gctggtggct ggcgggcttc gaccagcgga tcgacctcaa cccggcctat ttcctcgtcc
     1201 ccagcgtggc cgcgatcatg gtggccgtgc tgacggtcgc cgagcaggct gtccgggtct
     1261 cgcgcgccga gccttcgcgg gctctgcgct acgaataggc gcccacgctt ccattccgaa
     1321 atcctggcga aaagactcac cgtaagggtt cgccccgcaa ccccggggag ctacggtcgt
     1381 tcgatcgacc ggtgggttcg ggcgcgcgtt tcgggatggg aaaatcgatg aaatcagcac
     1441 tcttcgccgg tgtcgccttg gcgcttgtcc tgcaaggcgg ggctttcgcc cagaccgcgc
     1501 cgcacatcac cacgcccaaa caggccttca acggctccga gcccggcgac gactacttcc
     1561 tggcgaacta cgaccagacc accgcctact ggaagaagtt ggcctcagag tccgaccgca
     1621 tgaagctggt cagccttggc aagagcgtcg agggccgcga catctggatg gcgattgtct
     1681 cctcgccgga gaacctcaag aacctcgagc gctaccgcga catcgaccgg cgcctggccc
     1741 tggccaaggg cctcaccgac accgaggccc atgcgctcgc tcgcgagggc aaggccatgg
     1801 tctggatcga cggcggcctg cacgccagcg aggtctcgtc ggcccagtcg cagatccaga
     1861 tcgtctacga aatgctgtcg aagaccgatc cggagacgat gcgtctgttg aacgacgaca
     1921 tcaccctctt cgtcctgccc aacccggacg gacagcagct ggtcgccgac tggtatatgc
     1981 gcaaggccga tccgaaggcg cgcagcctcg ccgacctgcc ggtgatctac cagcgctacg
     2041 tcgggcacga caacaaccgc gaatactaca tgtccaacat gcccgagacg acggcgatga
     2101 accgcgccat gttcaaggac tggttcccgc agatcgtcta caacgagcac cagaccggcc
     2161 cgctgggcgc ggtggtgttc atcccgccgt tccgcaatcc gtcgaactat cacttcgatc
     2221 cgctggtgct gagcgaactg gatggcgtca gcgcggccat gcacagccgg ctgatcgccg
     2281 aggacaagcc gggctcggcc gagcgctcgg cggcgcccta ttccacgtgg ttcaacggcg
     2341 gcctgcggac caccggctat ttccacaatg ttgtggggat tctgaccgag atcatcggca
     2401 gcccgacgcc gatgcagctg cccttcgtgc cggcccgcca gctctccaac caggatgagc
     2461 tctatcccgt gccgccgcaa acctggcatt tcagacagac cgtcgaatac gtgaaatcca
     2521 tgaaccgggc ggtcatggac tacgcctcca agaaccggga ggacgtgctc tacaaccgct
     2581 atctgatggg gcggaattcc ctgaagcgcg gggctgagga cgcctggacc gtgaccccca
     2641 agcgcgtggc ggcggtggag gcggcggcca aggccaaccc gggcgcgccc gcgacccgtg
     2701 gcggcgacgg gctctccgga aacggcgact tcgccgccat cgtcgacccg aagctgttcg
     2761 acaccgtgct gcacgacccg gccgagcgcg atccgcgcgg ctacatcctg ccgctcgacc
     2821 agccggacct gccgaccacg gtcaagttcc tgaacgcgct gatcaagtcg ggtatcgtgg
     2881 tcgacaaggc caccgccgcc ttcacggtga agggcaagac ctatccggcc gggacctacg
     2941 tcgtcatgtg cgaccaggcc tatcgcccgc acgtgctgga catgttcgag ccgcaggatc
     3001 acccgcagga cttcgagttc cccggcgggc cgccgatcaa gccctacgat atcaccggct
     3061 ataccctggc cttccagatg ggcgtgaagt tcgaccgcgt cctcgacggc ttctcagggc
     3121 cgttccagcc ggtcaccgag gtgatggcgc cgccgcccgg caaggtggtg ggctccggcg
     3181 gcgcgggctg gctgctcgac caccgcacca acaacagttt caccctgacc aaccggctgc
     3241 agaaggccgg cgtgccggtc tcctggctga agacgccggt cacggcggcc ggccagacct
     3301 ttgggcccgg cgcggtctgg gttccggcca ccggccccgc gcgcgccatc gttcagaaga
     3361 gcgtcgtcga cctgggcgtc aacgcctacg ccatgggctc agcccccagg ggtgagaagc
     3421 tggcgctgaa ggcgccgcgc atcggcatcg tcgacaccta tggcgggctg atcacctcag
     3481 gctggatgca gtgggtcgtg gagcagttcg agttccccta cacgctggtc tatgcgcccg
     3541 agctcgacgc cggcaacctc aacgccaagt acgatgtcct gctgttcgtc gacggcgcca
     3601 tccccggcgg cgacagccgc tatggcggcg gcggtggcgg cggcggccgt ggcctgccga
     3661 aggctgaaga ggtgccggaa aagtaccgta agatgctggg ccggatcacc caggccacga
     3721 cgctgccaca ggtgaaggcc ttcgtgcaga acggcggcac ggcggtggcg gtcggcggct
     3781 cgacgcggct gggcgaatac ctcggcctca ccgaaaaccc gctggtccag acaggcaagg
     3841 acggcaagcc ccagcccctg ccgtcctcga agttctacat cccgggttcg atcctcctgg
     3901 gcaaggtcga taacaaggac ccgctgggct atggcttcgg cgagacggtg gacctgttct
     3961 tcgactccag cccggtcttc aagatcaaat cgggggatgc gaagccggtg tcctggttcg
     4021 agggcgccga cccgctgctc agcggatggg cgtggggtca gaaggcgctc gacggaaccg
     4081 ccagcatcgt cgacgcgagc ttcggctcgg gcaaggtgtt cctgctgggc ccagaggtcg
     4141 ccatgcgcgg ccaggcctac ggctccttca agttcgtgtt caacgcgctg gagtacggcc
     4201 ccgcggtcgg cggcaagccg gccaaggc
//
LOCUS       DATAJL010000894         3063 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88045,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000894 DATAJL010000000
VERSION     DATAJL010000894.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3063)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3063)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3063
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88045"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1474
                     /locus_tag="VHN39_16865"
     CDS             <1..1474
                     /locus_tag="VHN39_16865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2818067.1"
                     /translation="MTIHVRAPVGTRLEDTSLEFRRIETTIRQVIPADEVGSVVDNIG
                     IPNSSINMVYSNSGVIGPEDGDIFVSLKEHHHATAAYVKRLREVLPRDFPGTTFAFLP
                     ADIVSQILNFGAPAPIDLQIAGPNVAADRAYANALFRKIKTVRGLADVRMQQPEGAPE
                     LRVDIDRSRIAQLGLSERDVTNSMVTSLAGSSQGAPTYWVNPQNGVSYQIVAQTPEYR
                     LAALSGLENLPINGPNGGPVQMLGGLGTITRGSTPAVVSHYNAQTVIDIYATTQGRDL
                     GSVTKDINKILKDAAKDRPKGATVDLRGQMVTMNTAFSGLFFGLAAAIVLIYLLIVVN
                     FQSWLDPFVIITALPAALAGIVWILFATGTTLSVPALTGAIMCMGVATANSILVVSFA
                     RERLAATGDAIVAATEAGFTRFRPVVMTALAMIIGMAPMALGLGEGGEQNAPLGRAVI
                     GGLIFATIATLMFVPVVFSLVHGRRAHAVVPAPVSGESYA"
     gene            1467..2651
                     /locus_tag="VHN39_16870"
     CDS             1467..2651
                     /locus_tag="VHN39_16870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2818068.1"
                     /translation="MPDPAQSSIAGASIPTGRLKLVGLIAAGLAALVVIVGLVTRVSA
                     DQSQKAWTREQAIPTISLAKVEGGGVRQLVLPGDVQAFYTAPIHARVSGYLKRWYADI
                     GTPVKAGQVLADVDTPDLDQQVLQARADLATAQANQSLAATTSKRWAGLVAADAVSKQ
                     EAEEKLGDLAAKTSLVNASRANLNRLLALESFKKITAPFDGVVTTRSTDIGALIASTG
                     GPTDVALFTVADQRKLRVYVRVPQNYSALVSKGMTAELTVPEYAGQTFQAVVAGGANA
                     VGAQSGAELVELQLDNAGGKIKSGDYAQVTFHLASAANTMRIPVTAIQYRHNGPVVAV
                     VGANNHVTIRPVTVARDLGSSVEIGAGLSASDRVVDNPPEALVDGDLVRIAGASAQKA
                     GA"
     gene            2655..>3063
                     /locus_tag="VHN39_16875"
     CDS             2655..>3063
                     /locus_tag="VHN39_16875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004616801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2818069.1"
                     /translation="MAAARLLLTTALAAALAGCSLAPAYAPPATPIAAAFKEQGPWTP
                     AQPADAQARGAWWAMFADPVLDDLEARAEKANPSLAAAVAAYDEARALAAQARAGLVP
                     EIDGNASSQRTRRSDNQPLRVGGANQYTTDQLGV"
BASE COUNT          490 a         1142 c          999 g          432 t
ORIGIN      
        1 gatgacgatc catgtgcggg ccccggtggg cacccgactg gaggacacat cgctggagtt
       61 ccgtcgcatc gagacaacca tccgccaggt gatcccggcc gacgaggtgg gctcggtggt
      121 cgacaacatc ggcatcccga acagctccat caacatggtc tactcgaact ccggtgtgat
      181 cggcccggag gacggcgaca tcttcgtcag cctcaaagag catcaccacg ccaccgccgc
      241 ctatgtgaag cggctgcgcg aggtcctgcc gcgcgacttc ccggggacca ccttcgcctt
      301 cctgccggcc gacatcgtca gccagatcct gaactttggc gcgccggcgc ccatcgacct
      361 gcagatcgcc ggccccaacg tcgcggccga ccgcgcctac gccaacgcgc tgttccgcaa
      421 gatcaagacg gtccgtggcc tggccgacgt gcgcatgcag cagcccgaag gcgcgccgga
      481 actgagggtc gacatcgacc gctcgcgcat cgcccagctg ggcctctccg aacgcgacgt
      541 caccaacagc atggtgacct cgctggccgg cagctcgcag ggcgcgccca cctactgggt
      601 caacccccag aacggggtct cctaccagat cgtcgcgcag acgccggaat accgcctggc
      661 ggcgctgtct ggtctcgaga acctgccgat caacggaccg aacggcgggc ccgtccagat
      721 gttgggcggc cttgggacca tcacccgtgg cagcacgccg gcggtggtca gccactacaa
      781 cgcccagacc gtgatcgaca tctacgccac cactcagggc cgcgacctgg gctcggtgac
      841 caaggacatc aacaagatcc tgaaagacgc cgccaaggac cggccgaagg gcgcgacggt
      901 cgatctgcgt ggccagatgg tgaccatgaa caccgcgttc tcgggcctct tcttcggcct
      961 ggccgcggcg atcgtgctga tctacctcct gatcgtcgtg aacttccagt cgtggctgga
     1021 cccgttcgtg atcatcaccg ccttgcccgc ggcgctggcc gggatcgtct ggatcctgtt
     1081 cgccaccggc acgacgctct cggtgccagc gctgaccggc gcgatcatgt gcatgggggt
     1141 ggcgaccgcc aactccatcc tggtggtcag tttcgcgcgc gagcgcctgg ccgccaccgg
     1201 cgacgccatc gtggccgcca ccgaggccgg cttcacccgt ttcaggcccg tggtcatgac
     1261 ggcgctcgcc atgatcatcg gcatggcccc catggcgcta ggcctcggcg agggcggcga
     1321 gcagaacgcg cccctgggcc gcgccgttat cggcggactg atcttcgcca ccatcgccac
     1381 gctgatgttc gtcccagtgg tcttcagcct ggtgcatggc cgccgggctc acgcggtggt
     1441 cccagcgccg gtctccggag agtcctatgc ctgatcccgc ccaatcctcg atcgcagggg
     1501 cctccatccc gaccggccgg ctgaagctcg tcggcctgat cgccgccggc ctggccgccc
     1561 tggtggtgat cgtcggcctc gtcacccggg tcagcgccga ccagagccag aaggcctgga
     1621 cccgcgagca ggcgatcccg accatcagcc tggcaaaggt cgagggcggc ggcgtgcgcc
     1681 agctggtgct gccgggcgac gtgcaggcct tctacaccgc cccgatccac gcccgggtgt
     1741 cgggctatct gaagcgctgg tacgccgaca tcggaacccc ggtgaaggcg ggccaggtcc
     1801 tggccgacgt cgacacgcca gacctcgacc agcaggtgct gcaggcccgc gccgacctcg
     1861 ccaccgccca ggccaaccag agcctggcgg ccaccacctc caagcgctgg gcgggcctgg
     1921 tggcggccga cgcggtctcc aaacaggagg cagaggaaaa gctgggcgac ctcgccgcca
     1981 agacctccct ggtcaatgcc tcccgcgcca atctcaaccg gctcctggcc ctggagtcct
     2041 tcaagaagat caccgcgccc ttcgacgggg tggtgaccac gcgctccacc gacatcggcg
     2101 ccctgatcgc cagcaccggc ggcccgaccg acgtggcgct gttcacggtc gccgaccagc
     2161 gcaagctgcg ggtctatgtc cgcgtgccgc agaactattc ggccctggtc agcaagggca
     2221 tgacggccga gctcaccgtg ccggaatatg ccggccagac cttccaggcc gtggtggccg
     2281 gcggcgccaa cgccgtgggc gcccagagtg gcgcggagct ggtcgagctg cagctcgaca
     2341 acgccggcgg caagatcaag tccggcgact acgcccaggt gaccttccac ctggcctcgg
     2401 cggcgaacac catgcgcatc ccggtgaccg cgatccagta ccgccacaac ggcccggtgg
     2461 tggcggtggt cggcgccaac aatcacgtga ccatccgccc ggtgaccgtc gcccgcgacc
     2521 tgggctccag cgtcgagatc ggcgcggggc tctccgccag cgaccgggtg gtcgacaacc
     2581 cgcccgaggc cctggtcgac ggcgatctgg tgcgcatcgc cggcgcttcg gcgcagaagg
     2641 cgggggcctg agccatggcc gcggcccggc tgctgctgac gacagcgctc gccgccgcgt
     2701 tggccggctg ttcgctggcc ccggcctacg cgccgcccgc gacgccgatc gccgcggcct
     2761 tcaaggagca gggaccctgg acgcccgccc aacccgccga cgcgcaagcc cgcggcgcct
     2821 ggtgggcgat gttcgccgac ccggtgctcg acgacctgga agcccgcgcc gagaaggcca
     2881 accccagtct cgccgcggcg gtcgccgcct acgacgaggc ccgcgccttg gcagcccagg
     2941 cccgcgcagg cctggttccg gagatcgatg gaaacgccag cagccagcgg acccgccggt
     3001 cggacaacca gcccctgagg gtcggcggcg cgaaccaata tacgaccgat cagcttggcg
     3061 tat
//
LOCUS       DATAJL010000895         2579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101088,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000895 DATAJL010000000
VERSION     DATAJL010000895.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101088"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VHN39_16880"
     CDS             <1..321
                     /locus_tag="VHN39_16880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818070.1"
                     /translation="DLDQREQVYARFIEQASEMWLDAFESPHDPANLIGLSALVGRIR
                     LASARPVLEAAEGVMDFLLDTCERQPLDVRQLVAEAPREFVAPLTAFTGACRAEREQM
                     LRSL"
     gene            560..1489
                     /locus_tag="VHN39_16885"
     CDS             560..1489
                     /locus_tag="VHN39_16885"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEX2818071.1"
                     /translation="MSLDTLQRGRPATFGAEIAKNFGLNEEVVFVTPSPPKPQFAAIE
                     YRVDDPHGGLSEIIPPEDAYIVSVQLGGAREKNYWEEGRHVGRYGRVTGDSSISDLRR
                     EPRILIDLPVHSLLFYLPRASLNALARDAGLSSLDDLSFDPGVGFRDDTFWGLGQALL
                     PTLRAPEQANRLFTDYVALALASHVASAYGGRDIARPIRGGLAPWQEKRAKAMMLADL
                     AGRQSLDEVAAACGLSSSHFARSFRKTTGHAPHAWLVRARVQQAMVRLRRRDETVASV
                     AVACGFADPSHFARVFTRQVGLSPSAWRRLAMR"
     gene            1623..1823
                     /locus_tag="VHN39_16890"
     CDS             1623..1823
                     /locus_tag="VHN39_16890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818072.1"
                     /translation="MPVADVWSGQEVRQLKRFGEILDLASRLVGRDDHLANLLLEDAL
                     EELHGILGERARPIPVLRDEPH"
     gene            complement(2060..>2579)
                     /locus_tag="VHN39_16895"
     CDS             complement(2060..>2579)
                     /locus_tag="VHN39_16895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818073.1"
                     /translation="DLDRLLHSSLAERGFAPRAVPPDLLAELHALMACGPGMTDAAAT
                     RLLVLTTPEAKARLAGGLPDVEREAVIGAPACALIAHDRDFAEQMLAFASDGLDGRSS
                     LAEPARLQAAVLRSSVLQGAYLAVSARALGLEIDFFPSFDADRVRDEFFDERGLEAIF
                     VAAMGFPADRPR"
BASE COUNT          386 a          921 c          878 g          394 t
ORIGIN      
        1 gacctcgacc agcgcgagca ggtctatgcg cggttcatcg aacaggcgtc cgagatgtgg
       61 ctcgacgctt tcgagagccc gcacgatccc gccaacctga tcgggttgag cgccctcgtc
      121 ggccggatcc gcctggccag cgcccggccg gtcctcgagg cggcggaagg ggtgatggac
      181 ttcctgctcg acacctgcga gcggcagccg ctggacgtcc gccagctcgt cgctgaagcc
      241 ccccgcgaat tcgtggcgcc gctgaccgcc ttcaccgggg cctgccgggc tgagcgcgag
      301 cagatgctgc gcagccttta gtcccctggg cctgggacaa tcgcgtcatg aattgtagat
      361 tcctgcgcaa ttccaccgcg ccggccggcg gctgagcttg ctgcgacaat ctggcgctgc
      421 ctagctgcct gcgtatggcg cggcatgaac cagcggaagg gcgtccgaag tcggctgcct
      481 gcggcgtaac ctgcgggctg cgcgctaccg gacagcgcgg acgggcgaaa gcctgcgcga
      541 caaagacggg ccgcgcgcag tgagcctcga cacccttcag cgcggccgcc cggccacctt
      601 tggcgctgaa atcgcgaaga atttcggcct caacgaagag gtggtcttcg ttaccccctc
      661 gccgccgaag cctcagttcg ccgcgatcga ataccgcgtg gacgaccccc atggcgggct
      721 ctctgagatc attccgccgg aggacgccta tatcgtctcc gtccagctcg gtggcgcgcg
      781 ggagaagaac tactgggagg aaggccgcca cgtcggacgc tacggccgcg tcaccggaga
      841 ctcgtcgatc agcgacctgc ggcgcgagcc ccgcatcctg atcgacttgc cggtgcattc
      901 cctgctgttc tacctgccgc gcgcgtcgct gaacgccctg gccagggacg ccggcctgtc
      961 ttctttggat gacctgagct tcgacccagg cgtggggttc cgcgacgata cgttctgggg
     1021 cctcgggcag gcgctgctgc ctaccctgcg cgcgccagaa caggccaacc gtctgttcac
     1081 ggactacgtc gcgctcgcgc ttgcgtcgca cgtcgcctcg gcctacggcg ggcgggatat
     1141 cgcccgcccg atccggggcg gcctggcgcc ctggcaggag aagcgggcga aggcgatgat
     1201 gctcgccgac cttgccggcc ggcagtcgct ggacgaggtc gcagccgcct gcggcctgtc
     1261 gtcgagccac ttcgcccgct cgttccgcaa gaccacgggg cacgcgcccc acgcctggct
     1321 ggtgcgcgcc cgcgtgcagc aggccatggt gaggctgcgg cggcgggacg agaccgtggc
     1381 gtcggtcgcg gttgcctgcg gcttcgccga ccccagccat ttcgcccgcg tgttcacgcg
     1441 tcaggtcggt ctcagcccga gcgcctggcg gcggctggcg atgcgctgaa ccggacgccg
     1501 cgccgtcttt cgccggaaac gcgccgccga cgacgttccc ataccagcca gaggggaaag
     1561 cgctgaccat agtgcgcatc gcgggcttgg ccagcggctc gcctcggcgt cgggagacga
     1621 ccatgcctgt ggctgatgtc tggagcggtc aagaagttcg ccagctgaag cggttcgggg
     1681 agatcctgga cctggcgagc cggttggtgg gccgcgacga ccacctcgcg aacctgcttc
     1741 tcgaagacgc ccttgaagaa ctccacggca ttctgggcga gcgggcccgg cccatcccgg
     1801 tgctccgcga cgagcctcat tgaggcgacg tgacggattt ggacaagtcg cgacgccccc
     1861 gtgcaagacc gatccgtatg aggcgcagag aatgttgcgg cgggtttcga gatcccctcc
     1921 tgcgagacgc cccatctcct ggccgcctcc tccatcgaac ccgccatgcg tggcgtagcc
     1981 cccaacggca cgcggtctgg gaggccggct atcatggccg gcctcccttt tccgggaaag
     2041 cgccggatgc tcgcggcccc tagcgcggcc tgtcggccgg aaagcccatc gccgccacga
     2101 agatcgcttc caggccgcgc tcgtcgaaga attcgtcgcg caccctgtcg gcgtcgaagc
     2161 tggggaagaa gtcgatctcc agcccgagtg cgcgcgccga gaccgccagg taggcgccct
     2221 gcagcacgct gctgcgcaac accgccgcct gcagccgcgc cggttcggcg aggctcgagc
     2281 ggccgtccag cccgtcgctg gcgaaggcca acatttgctc ggcaaagtcc cggtcatggg
     2341 cgatcagggc gcaggccggc gcgccaatga ccgcctcccg ctccacatcc ggcaggcctc
     2401 cagcgagccg ggccttggct tccggcgtgg tcagcaccag cagccgggtc gctgcggcgt
     2461 cggtcatgcc gggcccgcag gccatcagcg catgcagctc cgcgagcagg tcgggcggca
     2521 ccgcccgcgg ggcgaagccg cgctccgcca gcgaagagtg cagcaaccga tccaggtcg
//
LOCUS       DATAJL010000896         5246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88084,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000896 DATAJL010000000
VERSION     DATAJL010000896.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5246
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88084"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..758)
                     /locus_tag="VHN39_16900"
     CDS             complement(30..758)
                     /locus_tag="VHN39_16900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjP-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HEX2818074.1"
                     /translation="MADGDRLEVAGTPVTLKVNRRARRVSLRLDRTRREIVATAPSQR
                     RLPEAAAFARERAGWIAERIAELPEATPLYPGMMLQVFGETVRLEAASGRAKWLPAAA
                     GEPARIAAMVSSDLGGEGYARAVILMLKKRAMAVLSERTEAYAAMLGVATPKVTVADA
                     KGRWGSCRPGVRGGPAAIRYSWRLALAPFEVADYVAAHECAHLLELNHGPRFWAHVQA
                     LIGEVKPHRAWLRAEGAKLHAFGR"
     gene            complement(810..2105)
                     /gene="phaZ"
                     /locus_tag="VHN39_16905"
     CDS             complement(810..2105)
                     /gene="phaZ"
                     /locus_tag="VHN39_16905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013477757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyhydroxyalkanoate depolymerase"
                     /protein_id="HEX2818075.1"
                     /translation="MLYSIYEAGFYASTPLRAVARMTRDFWSSPLNPARDSEIGRRLY
                     ANADLFANLTRRYGKPAWGIDSVEIDGQSVRVRPTEVWSSPWCKLTHFARDRADMRRA
                     GRRTLEPAVLIAAPLSGHYATLLRGTVQAFLQDHEVYITEWTNARDVPVLEGRFDFHD
                     YIDHIRQMLQVMGPRPHVVAVCQPGPPVLAAAALMAEDGDESRPGSMTFMGSPIDARL
                     SPTVTNKLAEEKPFTWFQSNMIDTVPAPYPGMGRRVYPGFVQLASFMSMNAAKHQEAH
                     QRYLRQLMDGDGDSAERHLEFYDEYLSVLDLTEEFYLQTVDVVFQRYLLPKGELEHRG
                     RLVRPELITDIRLMTVEGENDDISGIGQTQAAHELCSGLPDEFKQDYVQPHVGHYGVF
                     NGARFRDEIYPRVRAMIWETELALARNPANALPKATKAA"
     gene            complement(2192..2809)
                     /locus_tag="VHN39_16910"
     CDS             complement(2192..2809)
                     /locus_tag="VHN39_16910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEX2818076.1"
                     /translation="MSRTVWSILAILALAFAAITGLAVKRGILGAPSQSAAIGGPFHL
                     VDQAGRPADASVLKHKWNAVFFGYTYCPEACPTTLLALGQTEKLLGPKADDFQAVFIS
                     VDPGRDTPQVMARYLSNTSFPHRTLGLTGTAQQVAAVTHAYHVFYQKAGEGPGYQVNH
                     STITYLMSPNGDFVCVIPYGETPQMIAGQIQTAMKRGAHAQSCSA"
     gene            2949..4286
                     /locus_tag="VHN39_16915"
     CDS             2949..4286
                     /locus_tag="VHN39_16915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ActS/PrrB/RegB family redox-sensitive histidine
                     kinase"
                     /protein_id="HEX2818077.1"
                     /translation="MQGDLSRDEIGAGEDWAEGAVHRGRLRVRTLVTLRWLVVAGEAA
                     LLLVIMSMGFAVPYPLCFAVVGAAAWVNLLTGVASPGQRVFGDREAAAQLSLDILQMS
                     ALVFLTGGTSNPFVLMLIAPVTLAAATLPLRPVLILGAMAGALSALLAFVFLPLPEAP
                     GVAVVIPLSLRVGAALANIAGIALTAGYVRQAAVESARMALALDVTQAVLAREQRLSA
                     LGALAAAAAHELGTPLATISIVAKELAREAPTPAVKDDADLLVSQAERCRDILRRLTE
                     TPQAASDEVHERLSLRQLVHEVIEPHAGVKGVRVEAIVTGAKGMKTPDIRRMPEITHA
                     FTSFVENAVDFAASEILVSARFDAETISMEVRDDGPGFSPEVLAKLGEPYVTTRPGAE
                     GSRTGHIGMGLGFFIAKTLLERTGALVTFQNGRPHGAVVSARWPRSKIEAGVL"
     gene            4371..4928
                     /locus_tag="VHN39_16920"
     CDS             4371..4928
                     /locus_tag="VHN39_16920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ActR/PrrA/RegA family redox response regulator
                     transcription factor"
                     /protein_id="HEX2818078.1"
                     /translation="MTDLSADVAALSDKSLLVLDDDAPLRTRLGRALEQRGFEPTLVG
                     SVSEALAAVRSHAPAFAVLDMRLEDGTGLKVVEAVRDARPDAKIIMLTGYGNIATAVQ
                     AVKAGAVDYLSKPADADDVARALLARADSSPAPPDNPMSADRVRWEHIQRIYELCNHN
                     VSETARRLNMHRRTLQRILAKRAPR"
BASE COUNT          801 a         1811 c         1789 g          845 t
ORIGIN      
        1 gcctgtccct ccccattagg ggagggaaat caccgcccga aggcgtggag cttggcgccc
       61 tcggcgcgca gccaggcgcg gtggggtttc acctcgccga tcagggcctg gacgtgggcc
      121 cagaagcgcg ggccgtggtt cagctccagg aggtgggcgc actcgtgggc cgccacatag
      181 tcggcgacct cgaagggggc cagcgccagc cgccagctgt agcggatcgc ggccggcccg
      241 ccccgcacgc ccggccggca ggagccccag cggcccttgg cgtcggcgac ggtgaccttg
      301 ggcgtggcca cgcccagcat ggcggcgtag gcctcggtgc gctccgacag caccgccatg
      361 gcccgcttct tcagcatcag gatcacggcg cgggcatagc cctcgccccc aagatcagag
      421 gagaccatgg cggcgatgcg cgccggctcg cccgccgcgg cagggagcca tttggcgcgg
      481 ccgctggcag cctcgaggcg cacggtctcg ccgaacacct gcagcatcat tccgggatag
      541 agcggtgtcg cctcgggcag ttcggcgatc cgttcggcga tccagccggc ccgctcgcgg
      601 gcgaaggcgg cggcctcggg gagcctgcgc tgtgacggcg cggtggcgac gatctcgcgc
      661 cgggtgcggt cgagcctgag cgacacccgc cgcgcgcggc ggttgacctt cagggtgacg
      721 ggcgtcccgg ccacctccag ccggtcgcca tcggccaagg cctttgcgcg cggaggggaa
      781 cggccgaaga gactcatcgt ctctcgaatc taggcggctt tggtcgcctt ggggagggcg
      841 ttggcggggt tacgcgccag cgccagctcg gtctcccaga tcatcgcgcg tacccgcgga
      901 taaatctcgt cacggaaccg cgcgccattg aagacgccgt agtggccgac atgcggctgg
      961 acatagtcct gcttgaactc gtccggcagg cccgaacaca gctcgtgcgc cgcctgggtc
     1021 tggccaatgc cggagatgtc gtcattctcg ccctcgacgg tcatcagccg gatgtcggtg
     1081 atcagctcgg gcctgacgag ccgcccgcga tgctccagct cgcccttggg cagcaggtag
     1141 cgctggaaca ccacatcgac ggtctgcagg tagaactcct cggtcaggtc caggaccgac
     1201 agatattcgt cgtagaattc caggtgccgc tcggccgagt cgccgtcgcc gtccataagc
     1261 tggcgcaggt agcgctgatg cgcctcctgg tgcttcgcgg cgttcatcga catgaagctg
     1321 gcgagctgga cgaaccccgg atagacgcgc cggcccatgc ccggataggg cgcgggcacg
     1381 gtgtcgatca tgttcgactg gaaccaggtg aagggctttt cctcggccag cttgttagtc
     1441 accgtcggcg acaggcgcgc atcgatcggc gaacccatga aggtcatcga gcctggacgg
     1501 ctctcgtcgc cgtcctcggc catcagggcg gcggcggcca gcaccggcgg gcccggctgg
     1561 cagaccgcca ccacgtgggg cctggggccc atgacctgca gcatctggcg gatgtggtcg
     1621 atgtagtcgt ggaaatcgaa gcggccctcg agcaccggca catcgcgggc gttggtccac
     1681 tcggtgatgt agacctcgtg atcctgcagg aaggcctgca ccgtgccgcg caggagcgtg
     1741 gcgtagtggc ccgacagcgg ggcggcgatc agcaccgcgg gctccagcgt ccgacgcccg
     1801 gcccggcgca tgtcggcccg gtcgcgggcg aaatgggtca gtttgcacca ggggctcgac
     1861 cagacctcgg tggggcgcac ccgcacgctc tggccgtcga tctcgacgct gtcgataccc
     1921 caggccggct tgccgtagcg gcgcgtgagg ttcgcgaaca gatcggcgtt ggcgtaaagg
     1981 cggcggccga tctccgaatc ccgcgctggg ttgagcggcg aggaccagaa gtcccgcgtc
     2041 atccgggcca cggccctcag cggcgttgag gcgtagaaac ccgcttcata gatcgagtac
     2101 agcatgcccg gtcctttgtg caccgcaaca taacacccga accgttaatg cggtccatac
     2161 ccaaccttcc tttcccgcgt tgcgggagag attacgcgct gcaactctgg gcgtgggcgc
     2221 cgcgcttcat ggcggtctgg atctggcccg cgatcatctg gggcgtctcg ccgtacggaa
     2281 tcacgcagac gaagtcgccg ttcgggctca tcaggtaggt gatggttgag tggttcacct
     2341 gatagcccgg cccctcgccg gccttctgat agaagacatg ataggcgtgc gtcaccgccg
     2401 ccacctgctg cgccgtgccg gtcaggccca gtgtgcggtg cgggaaggac gtgttggaca
     2461 ggtatcttgc catgacttgc ggcgtgtcgc gtcccggatc gaccgagatg aacaccgcct
     2521 ggaagtcgtc ggccttgggc cccagcagtt tttccgtctg gccgagcgcc aggagcgtcg
     2581 tggggcaggc ctccgggcaa taggtgtagc cgaagaagac cgcgttccac ttgtgtttca
     2641 ggacgctggc gtcggccggc cggccggcct ggtcgaccag atggaacggc ccgccgatcg
     2701 ccgcgctctg tgagggggcg cccagtatgc cccgcttgac cgcgagcccg gtgatggcgg
     2761 cgaacgcgag ggccaggatg gcgaggatgc tccagacggt ccggctcatg aggcgttcct
     2821 acagtcctat ccgctttggg gctcgtcagg gccttgcagc cgggcgatcc tgttgagcca
     2881 tgcccacacg caggacgccc accgcgcctt cgacgcagcc ccgcctcgat aggaccgggg
     2941 cctccagctt gcaaggcgac ctctcgcggg acgagatcgg ggccggagaa gactgggcgg
     3001 agggcgcggt ccaccgcggg cgccttcggg tccgaaccct ggtcaccctg cgctggttgg
     3061 tggtggccgg cgaggcggcg ctgctgcttg tgatcatgag catgggattc gccgtgccct
     3121 atcccttgtg tttcgccgtg gtgggcgccg cggcctgggt caatctcctg accggcgtcg
     3181 cttcgcccgg tcagcgggtg ttcggcgacc gcgaggccgc cgcccagctc agcctcgaca
     3241 tcctgcagat gagcgcgctg gttttcctca ccggcgggac ctccaacccc ttcgtcctga
     3301 tgctgatcgc gccggtgacg ctcgcggccg ccacccttcc gctgagacct gtcctgatcc
     3361 tcggcgccat ggccggcgcc ttgtccgcgc tgctggcttt cgtattcctg cccctgccgg
     3421 aagcccccgg cgtggcggtg gtgatcccgc tcagcctgcg cgtgggcgcg gcgctcgcca
     3481 atatcgctgg cattgcgctg accgccggct atgtccgcca ggcggcggtg gagtcggcgc
     3541 gcatggcgct ggcgctggac gtgacccagg cggtgctcgc ccgcgaacag cggctctcgg
     3601 cgctcggcgc gctcgccgcc gccgcggccc atgagctcgg caccccgctc gccaccatct
     3661 ccatcgtcgc caaggagctc gcccgcgaag cgccaacccc ggcggtgaag gatgacgccg
     3721 acctcctggt ctcccaggcc gagcgctgcc gcgacatcct gagacggctc acggaaacgc
     3781 cgcaggcggc gtcagacgag gtgcacgagc gcctgtcgct gcgccagctg gtccatgagg
     3841 tgatcgagcc gcacgccggg gtgaagggtg tccgcgtcga ggcgatcgtc accggcgcca
     3901 agggcatgaa gaccccggac atccgccgga tgccggagat cacccacgcc ttcacctcct
     3961 tcgtggaaaa cgcagtggac ttcgccgcct cggagatcct ggtctccgcg cgcttcgacg
     4021 ccgagaccat ctccatggag gtgcgcgacg acggtccggg cttctcgccg gaggtgctgg
     4081 ccaagctcgg agaaccctat gtgaccaccc gtccgggggc cgaaggctcg cgtacggggc
     4141 acatcggcat ggggctcggc ttcttcatcg ccaagactct tttggaacga acaggggccc
     4201 ttgtgacgtt tcagaacggc agaccgcacg gcgccgtcgt gtcagcccgc tggccgcgct
     4261 cgaaaatcga agccggtgtg ttgtgagttg cagcttgctc tgacgtcgtg acctgcgaca
     4321 ggatgacgca cacgtcagag cctagcgacc cgcaagtaag ggatcaccgc atgaccgacc
     4381 tctccgccga cgtcgccgcc ctctccgaca agagcttgtt ggtcctcgac gacgacgcgc
     4441 ccttgcgcac ccgtctgggc cgcgcgcttg agcagcgggg tttcgagccc accctggtcg
     4501 gatcagtctc cgaggcgctg gccgccgtgc gcagccacgc cccggccttc gccgtgctgg
     4561 acatgcgcct ggaggacggc acgggcctca aggtcgtgga ggccgtccgc gacgcccgcc
     4621 ccgacgccaa gatcatcatg ctgaccggct acggcaacat cgccaccgct gtgcaggcgg
     4681 tgaaggccgg cgcggtcgac tatctctcca agcccgccga cgccgacgac gtggcccgcg
     4741 cgctgctggc ccgcgccgat agctcgccgg cgccgccgga caatccgatg agcgccgacc
     4801 gggtccgctg ggagcacatc cagcgcatct atgagctctg caaccacaac gtctcggaga
     4861 cggcgcgccg gctcaacatg caccgccgca cgctgcagcg gatcctcgcc aaacgcgccc
     4921 cgcgctagtg agctggattt gaagctcgcc tcattcatga ccaaacgccg tgcgaacttc
     4981 aaatccaaag aagcacacta gaaacatgga cttgccagtg ccctcatcga ttccgaagct
     5041 cgtccgagct ggccgcaaac gctgccgaac ttcggaatcg ggacactagg ccgccgccgg
     5101 gggagcgcgg tcgtggcgac ctgggacgat atccgcgccg tcgccctgac cctgcccggc
     5161 gcttgggaga atgagtggta cggccagccg tccttccagg tcggcagcaa gggcttcgtc
     5221 cagggctttc gcggccgcac catcat
//
LOCUS       DATAJL010000897         2955 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88126,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000897 DATAJL010000000
VERSION     DATAJL010000897.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88126"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..803)
                     /locus_tag="VHN39_16925"
     CDS             complement(66..803)
                     /locus_tag="VHN39_16925"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEX2818079.1"
                     /translation="MSRKDPHPVALSAAEVAFVRSLVIYEDPDILALNKPSGLSSQGG
                     RGQVHTLDELLWAFAKPGKARPRLIHRLDRDTSGVILTARTKPAAGFLGKAMMGRRFA
                     KTYRAIVTPGAPEPAKGAIDVPLRRDEQGREAYMRVCAPDHTDAETARSRYRTLSEAP
                     GAALLELDPETGRMHQLRVHLAHIGRPIAGDARYGGALVVGGHAIPRLMLHATALTFP
                     HPSGGEKRLEAPVPPDMAALISALGLG"
     gene            complement(814..1257)
                     /locus_tag="VHN39_16930"
     CDS             complement(814..1257)
                     /locus_tag="VHN39_16930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818080.1"
                     /translation="MTATTDTPRAAAPWHFWVLGVVGLLWSCLGGYDYLMSHLQGVAY
                     YRQSHMSEAQIAVMNAYPVWMHAVWAIGVWGSVAGALLLLLRARWAFHAYALSTLGAV
                     GSLGYSVAVAHVTQTMGIVFPVIIIAVCLFFTWYSSTMTKQGVLR"
     gene            complement(1326..2630)
                     /locus_tag="VHN39_16935"
     CDS             complement(1326..2630)
                     /locus_tag="VHN39_16935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEX2818081.1"
                     /translation="MADLFEAAGLTPQAPSPLADRLRPQRLDEVVGQDHLLGPNGPIR
                     RMAEAKRLASMILWGPPGTGKTTIARLLAKEAGYEFQQLSAVFSGVADLKKAFEQARV
                     RRLAGQSTLLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRSQ
                     VFVLKRLDDVALETLLEKAEAFEGRTLPLEPDARAALTALADGDGRYLLSLAETLFNI
                     GTATPLSTKDLGQVLQKRSPAYDKDREEHYNLISALHKSIRGSDPDAALYWLARMLAG
                     GEDPLFVARRLIRAAAEDIGEADPMSLVLANAAKDTYDFLGSPEGEIALAQLTIHLAT
                     APKSNAVYRAYGAAMKAARETGSLMPPAHIRNAPTKLMKDLGYGKGYAYDHDAPEGFS
                     GQDYFPDEMDRQTFYTPKGDGSEARIKERLDRWAALRKERGG"
     gene            complement(2705..>2955)
                     /locus_tag="VHN39_16940"
     CDS             complement(2705..>2955)
                     /locus_tag="VHN39_16940"
                     /inference="COORDINATES: protein motif:HMM:NF024578.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEX2818082.1"
                     /translation="LSPAVAEEIGLDPFAKVGVMVTKAAEGAARQLGVQPGDIIRAVN
                     GREIKSVHDLTNAVVAPAPVWQFTIERNGQQVTATVRT"
BASE COUNT          444 a          995 c         1053 g          463 t
ORIGIN      
        1 gaagaggcgt ttcatgggtc atagctccgc ccacgaaacg ggcgaattcg cggcgccgtt
       61 ccggatcagc cgagaccaag cgcggaaatc agcgccgcca tgtcgggcgg gaccggcgcc
      121 tccaggcgtt tctcgccccc ggacgggtgc gggaaggtca gcgccgtcgc atgcagcatc
      181 aggcgaggga tggcgtgacc accgaccacc agggcgccgc catagcgcgc gtcgccggcg
      241 atggggcggc cgatatgggc caggtggacg cggagctggt gcatgcgccc ggtctcgggg
      301 tcgagctcca gcagggcggc cccaggggcc tcggagaggg tcctgtagcg gctgcgcgcg
      361 gtctcggcgt cggtgtggtc cggagcgcag acccgcatat aggcctcccg gccctgttcg
      421 tcgcggcgca gggggacatc gatggcgccc ttggccggct ccggcgcgcc gggcgtgacg
      481 atggcgcggt aggtcttggc gaacctgcgg cccatcatcg ccttgccgag gaagccggcg
      541 gcgggcttgg tccgcgcggt caggatgacc ccggaggtat cgcggtccag gcgatggatc
      601 agccgcggcc tcgccttgcc gggcttcgcg aaggcccaga gcagttcgtc cagggtgtgg
      661 acctgccctc ggcctccttg gctggaaaga cctgacggct tgttgagcgc caggatgtcg
      721 gggtcctcat agatcaccag gctccgcacg aaggcgactt cggcggcgct tagcgcgacg
      781 gggtggggat ctttgcggct cacccgctcc cgtctaccgg agcacgccct gcttcgtcat
      841 cgtcgaagaa taccaggtga agaacaggca cacggcgatg atgatcaccg ggaagacgat
      901 ccccatggtc tgcgtgacgt gggccacggc gacggaatag cccagcgagc ccaccgcccc
      961 cagggtcgac agggcgtagg cgtggaacgc ccacctagcc cgcagaagca gcagcagcgc
     1021 tcccgccacc gagccccaca cgccgatcgc ccagacggcg tgcatccaga cggggtaggc
     1081 gttcatcacc gcgatctgcg cctcgctcat gtgcgactgg cggtagtacg ccaccccttg
     1141 caaatggctc atcaggtagt cgtagccgcc aaggcagctc cagagcagcc ccaccacacc
     1201 cagcacccag aagtgccagg gcgccgccgc gcgcggcgta tccgttgtcg cggtcatttt
     1261 gcgttctccc ccgaagttga cggagtgagg ctacgtccgc acgcgccgga taacaatgtt
     1321 tcggactatc cgccgcgctc cttgcgcagc gccgcccagc ggtcgagccg ctccttgatc
     1381 cgcgcctcgg agccgtcgcc cttgggggtg tagaaggtct ggcggtccat ctcgtcgggg
     1441 aaatagtcct ggccggagaa gccctcgggc gcatcgtggt cgtaagcgta gcccttgccg
     1501 taacccaggt ccttcatgag cttggtgggc gcattgcgaa tatgggccgg cggcatgagc
     1561 gagcccgtct cccgcgccgc cttcatggcc gcgccatagg cccggtagac ggcgttggac
     1621 ttgggcgccg tcgccaggtg gatggtcagc tgggccagcg cgatctcgcc ctccgggctg
     1681 cccaggaaat cgtaggtgtc cttggccgcg ttcgccagga ccagcgacat gggatcggcc
     1741 tcgccgatgt cctcggccgc cgcgcggatc aggcgccgcg ccacgaacag cggatcctcg
     1801 ccgccggcca gcatgcgggc cagccagtag agcgccgcgt ccgggtcgga gccccggatc
     1861 gacttatgca gggcggagat gaggttgtag tgctcctcgc ggtccttgtc gtaggccggg
     1921 ctgcgcttct gcagcacctg acccaggtcc ttggtggaga gtggtgtggc cgtgccgatg
     1981 ttgaagagtg tctcggccag ggacagcagg tagcgcccgt cgccgtcggc cagcgccgtc
     2041 agcgccgcgc gggcgtccgg ctccagcggc agggtacggc cttcgaaagc ctcggccttc
     2101 tccagcaggg tctccagcgc cacgtcgtcc aggcgcttca gcacgaacac ctggctgcgc
     2161 gacaggagcg ccccgttcaa ttcgaaagac gggttctcgg tcgtcgcgcc cacaagggtg
     2221 acgatcccct cctccacgaa gggcaggaaa ccgtcctgct gggcgcggtt gaagcggtgg
     2281 atctcgtcga cgaaaagcag ggtgctctgg ccggccagac ggcgcacgcg cgcctgttcg
     2341 aaggccttct tcaggtccgc gacgccggag aacaccgccg agagctgctg gaactcgtag
     2401 ccggcctcct tggccagcag gcgcgcgatg gtggtcttgc cggtgccggg cgggccccag
     2461 aggatcatcg aggccaggcg cttggcctcg gccatccggc ggatcgggcc attggggccg
     2521 agcaggtggt cctggcccac gacctcgtca agccgctgcg ggcgcaggcg gtcggcgagc
     2581 ggggacggcg cctggggcgt caggcccgcg gcttcgaaga ggtcggccat ggggcaagcc
     2641 ttagcaaatc gcccgccccg gcgttagggc cgaagccccc tggtccttag gaaggtctgg
     2701 gtcgtcaggt ccggacggtg gcggtcacct gctggccgtt gcgctcgatg gtgaactgcc
     2761 agaccggcgc cggcgccacg acggcgttgg tcaggtcgtg gacgctcttg atctcgcgcc
     2821 cgttcaccgc ccggatgatg tcgccgggct gcacgccgag ctggcgggcc gcaccctcgg
     2881 ccgccttggt gaccatgacg cccaccttgg cgaaggggtc gaggccgatc tcctcggcta
     2941 ccgccggtga caggt
//
LOCUS       DATAJL010000898         2075 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88142,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000898 DATAJL010000000
VERSION     DATAJL010000898.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88142"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..442
                     /locus_tag="VHN39_16945"
     CDS             <1..442
                     /locus_tag="VHN39_16945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008262922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008643 - carbohydrate transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEX2818083.1"
                     /translation="LKGLGLVDSFGGVLVPAAASVFGIFLVRQYALSIPDELLEAARI
                     DGAGEMRVFRSIVLPTLLPIMVTLATFTFLATWNDFMWPLIVLSDERLYTLPVALASL
                     SREHVQDSELMMAGAVVTVAPVLLLFVILQRYYIQGLLAGSVKG"
     gene            complement(933..>2075)
                     /locus_tag="VHN39_16950"
     CDS             complement(933..>2075)
                     /locus_tag="VHN39_16950"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2818084.1"
                     /translation="RPRRSHQPGGSSPGIRAMKLAPALLLSALTLSACSPKAKAPDPA
                     DSPLATDVVQIKSSVLSTKMALPGQLLPYESVDLYPKVAGFIQEIRVDRGSHVRKGEV
                     LVRLTAPEAVAQQGQAAGALAAAEAKLASDRATYERLANAAKTPGVVAENDVNIARQT
                     AASDAAQVKSASESASVARQLGAYLEIRAPFDGVITARNLHPGALVGPSTGPAGALPI
                     LQMVTANRLRLVVAVPETSVQSARPGQSISFSVPTLPGRTFQAPITRMAEALDIRTRT
                     MSVEADIPNPTGDLTPGTFATVQWPVTRSYPTLRAPSSAVANDQQKQFVIRVANGVAS
                     WVEVTTGMSDNGALEVFGALQPGDYVVKRGTDAIKPGAKIKPVTAK"
BASE COUNT          306 a          663 c          737 g          369 t
ORIGIN      
        1 gctaaagggt ctcgggctgg tggacagttt cggcggcgtc ctggtccctg cggcggccag
       61 cgtgttcggc atcttcctgg tgcgccagta cgccctgtcg atccccgatg agctcctgga
      121 agccgcgcgg atcgacggcg ccggcgaaat gcgggtcttc cgctcgatcg tgctgccgac
      181 cctgctgccg atcatggtga cgctcgccac cttcaccttc ctcgccacct ggaacgactt
      241 catgtggcca ctgatcgtgc tcagcgacga gcgcctctac accctgccgg tcgcgctggc
      301 ctcactgtcg cgcgagcacg tgcaggacag cgagctgatg atggccggcg ccgtcgtcac
      361 cgtggcccca gtgctgctgc tcttcgtcat cctgcagcgc tactacatcc agggcctgct
      421 ggccggcagt gtcaaaggct gaccgcggcc gcctcgctgg ttggccccgg caggactcga
      481 acgtcccaag cgggatgggt gaagtcttcc cgacatacca acaaatgtac caataagcgg
      541 aactcgcagc ctcctgggtc gacattgcgc caagaggagg tccgctttgc ggctcggctc
      601 catggtccgc tttcgaccca aaccggacat tggataggtc cgctttcagg tcttaggcca
      661 ccaagcggga gttagtgacg cggggcacga tatgtcggag accgtcgggc ttcgctgtga
      721 tgttgaccct ccccagtacg ccggcgggcg tcccgtcgcg tcattgtggg gactcaagtc
      781 gcaggcgcga cagacttggc ccaccgcgga tccctgaccc tctgaatgga ccgacgtggc
      841 cactgaaacg atggccggcg gttccgagcg tgtcggtccg atcatggacg gctacagact
      901 gttgaacggc tggtgcggcg cccaggcgag ggctacttcg ccgtcaccgg cttgatcttc
      961 gcgccgggct taatggcgtc ggtgccgcgt ttcaccacat agtcgcccgg ctggagggcg
     1021 ccgaagactt cgagggcgcc gttgtcgctc atgccggtgg tgacctcgac ccaggaggcc
     1081 acgccattgg ccacgcggat cacgaattgc ttctgctggt cgttcgccac ggcgctcgaa
     1141 ggcgcccgca gggtaggata cgagcgcgtc accggccatt ggacggtcgc aaaagtcccg
     1201 ggggtgaggt caccggtcgg attggggatg tcggcctcga cgctcatggt gcgggtgcga
     1261 atgtccagcg cctcagccat tcgggtgatc ggcgcctgga aggtgcggcc cggcagagtg
     1321 ggcacgctga agctgatgga ttgccccggc cgcgcgctct gaacgctggt ttccggcacg
     1381 gccacgacga gccgcagccg gttggcggtc accatctgca ggatcggcag agcgccggcc
     1441 gggccggtcg atgggcccac cagggcgccc ggatgcaggt tgcgcgcggt gatgactcca
     1501 tcgaacggcg cgcggatttc gaggtaggcg ccaagctggc gggcgaccga ggcggattcc
     1561 gacgccgact tgacctgggc ggcgtcgctg gcagcggtct ggcgggcgat gttgacgtcg
     1621 ttctcggcga cgacgccggg ggtcttggcg gcgttggcga gccgctcgta ggttgcgcgg
     1681 tctgacgcga gcttcgcctc ggcggcggct agggcgccgg cggcctggcc ttgctgtgcg
     1741 acggcttcgg gggcggtcag ccggacgagg acctcgccct tgcgcacgtg cgaaccgcgg
     1801 tcgacgcgga tctcctgaat gaaccccgcg accttcggat agaggtcgac gctctcatag
     1861 ggcaggagct gacccggcaa ggccatcttg gtcgagagca cggaactctt gatctggacc
     1921 acgtcggtcg ccagcgggct gtccgccgga tcgggcgcct tggccttggg gctgcaggcg
     1981 ctcagcgtca gggccgagag cagcaatgcg ggggcgagct tcatggcgcg gattccaggg
     2041 ctggagccac ccggctggtg ggatcgtcgg ggtcg
//
LOCUS       DATAJL010000899         2817 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74698,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000899 DATAJL010000000
VERSION     DATAJL010000899.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2817
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74698"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            161..1249
                     /locus_tag="VHN39_16955"
     CDS             161..1249
                     /locus_tag="VHN39_16955"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2818085.1"
                     /translation="MGRGAAPLELGVIIPTFKEAPNVGPLLAKLEAALQGVVWQAIFV
                     DDDSPDGTAAAVKAIAAIDPRVMCLHRIGRRGLAGAVIEGAMASAAPFVAVIDGDLQH
                     DETLLPQMLKALQEDRADLVVGSRYLTGGGSDASALGQGREAGSRLANWLGRLVLHAE
                     MTDPMSGFFMVRRELIETPASKLSTSGFKVLFDLMASQETPPRVLELPYEFRTRVAGE
                     SKLDKGVVLQYLGLLISKFSRDFISPRFLMFAIVGASGVVVHLLILRGLLPYGFAPAQ
                     LVAALGAMTSNYLINNAVTYRDRRKRGLGLLVGYFKFVLLCSVPLAANVAVATMVYER
                     GPAWWVAGVAGAVVAAVWNYITTSRAVW"
     gene            1250..2746
                     /locus_tag="VHN39_16960"
     CDS             1250..2746
                     /locus_tag="VHN39_16960"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX2818086.1"
                     /translation="MGAARSPHRDLLLLALGLTTLRLIAAGTIPLTEDEAYYRLWAQH
                     LQLGYLDHPPMIAWWIRTGELVFGDTPLGVRLVPALASGLTTWLIGDLARRLGAEPRT
                     AFRAALWYNATVTVCLGGMLAIPDAPASLFWTITLWALARFWEARRPGWWLAAGLAAG
                     LAVLSKYSGLFLAPGVLLWLLLIPDGRAELRRPWPWAAAAIAGLVFAANVIWNAQHHW
                     ITFAKQFGRATPHGLTLAHVGDLLGTQLLLFTPPLALYAALGVRQAWRERAEAGAIRL
                     MLPVATSAPFAAYLLVHSLHDRVQGHWPVPLFGAFAVCAAVAGERLGATAGLRTLRRL
                     APVVGFAVGAAAFILMALPFPNALRGRDPTLPLRGWPQIAGDIEALRVRTGAAWVGTE
                     SYGVYAQLNTARRITSPLLEVIERDRYWASDPEPDFTRPGLVVDLSRRMKTGDVLRCF
                     TQVAVAGDLTRAGGMSHNQRYTAFLVSGPRRDVWIIGCPDEISPGVWR"
BASE COUNT          365 a         1018 c          964 g          470 t
ORIGIN      
        1 gcgaccaatt tgaccgcgat cagacggttc ccagctctcg gcggcgcggg tatgagggcg
       61 gatgcgcgca ccacccggga gtccattgcg tcaccaaccc gtcaggcgcg tccgcaagcc
      121 agccgccccg acggccgcct cgacggcccc cccaagcgcc atggggcggg gcgccgcgcc
      181 gcttgagctc ggcgtcatca ttccgacctt caaggaagcg cccaacgtcg gcccgctgct
      241 ggccaagctg gaggccgcgc tccagggggt cgtctggcag gcgatcttcg tcgacgacga
      301 cagccccgac ggcaccgcgg cggccgtgaa ggccatcgcg gccatcgatc ctcgggtcat
      361 gtgcctgcac cgcatcggcc gccgcggcct ggccggcgcg gtgatcgaag gcgccatggc
      421 cagcgccgcg cccttcgtgg cggtgatcga cggcgacctg cagcacgacg agaccctgct
      481 gccccagatg ctcaaggccc tgcaggaaga ccgggcggac ctagtggtgg gcagccgcta
      541 cctgaccggc ggcggctcgg acgcctcggc gctcggccag ggccgcgaag cgggcagccg
      601 cctcgccaac tggctggggc gcctggtgct gcacgccgag atgaccgatc cgatgagcgg
      661 cttcttcatg gtccgccgcg agctcatcga aacgccggcc tcaaagctct ccacctccgg
      721 cttcaaggtg ctgttcgacc tgatggcctc gcaggagacc ccgcccaggg tcctcgaact
      781 gccctacgag ttccgcaccc gcgtggccgg ggagagcaag ctcgataagg gcgtggtgct
      841 gcaatatctc ggcctgctga tctccaagtt cagccgtgac ttcatctcac cgcgattcct
      901 gatgttcgcc atcgtcggcg caagcggcgt ggtcgttcac ctgctgatcc tgaggggttt
      961 gctgccctac ggtttcgccc ccgcccagct ggtcgcggcc ctgggcgcga tgacctccaa
     1021 ctatctgatc aacaacgccg tgacctaccg cgaccggcgc aagcgcgggc ttggcctgct
     1081 ggtgggctac ttcaagttcg tcctgctctg cagcgtgccg ctggcggcca atgtggcggt
     1141 cgccaccatg gtctatgagc gcggtccggc ttggtgggtg gccggcgtcg ccggcgcggt
     1201 ggtcgcggcc gtctggaact acatcacgac ctcaagggcg gtgtggtgaa tgggcgcggc
     1261 gcgcagcccc caccgtgatc tcctgcttct ggcgctcggc ctcacgacgt tgcgccttat
     1321 cgccgccgga accatccccc tgaccgagga cgaggcctac tatcgcctct gggcgcagca
     1381 cctgcagctg ggctacctcg accacccacc gatgatcgcc tggtggatcc gcacaggcga
     1441 actggtcttc ggcgacacgc cgctgggagt ccgcctcgtc ccggcgctgg ccagcggact
     1501 gaccacctgg ctgatcggcg acctggcccg ccggctgggc gcggagccgc ggaccgcgtt
     1561 tcgcgcggcg ctctggtaca acgccaccgt gaccgtctgc ctgggcggca tgctggcgat
     1621 cccggacgcc ccggccagcc tcttctggac gatcacgctc tgggcgctgg cccgcttctg
     1681 ggaggcccgc cgccctgggt ggtggctggc ggctggtctc gccgcgggat tggctgtgct
     1741 ctcgaagtac tccggcctgt tcctcgcgcc tggcgtgctg ctctggctcc tgctgatccc
     1801 cgacggccgc gccgaactgc ggcgaccctg gccgtgggcg gcggccgcga tcgccggcct
     1861 agtgttcgcg gccaatgtga tctggaacgc ccagcatcac tggatcacct tcgccaagca
     1921 gttcggccgc gcgacgcctc acggcctgac gctggcccat gtgggcgatc tcctggggac
     1981 ccagcttctg ctcttcaccc cgccgttggc gctctatgcc gcgctcggcg tgcgccaggc
     2041 gtggcgcgag cgggctgagg ccggggccat ccgcctgatg ctgccggtgg cgacgtcggc
     2101 gcccttcgcg gcctatctcc tggtccacag cctgcatgac cgcgtccagg gccactggcc
     2161 ggttccgctg ttcggcgcct tcgccgtctg cgcggccgtg gcgggtgagc ggctcggcgc
     2221 gacggcgggt ttgcggaccc tgcgcaggct cgcgccggtc gtggggttcg cggtcggcgc
     2281 ggcggccttc atcctgatgg cgctcccctt tcccaacgcc ctcaggggcc gcgacccgac
     2341 cctgccgctg cgcggctggc cgcagatcgc tggcgacatc gaggccctgc gggtcaggac
     2401 cggggcggcc tgggtgggga ccgagagcta cggcgtctat gcccagctca acaccgcccg
     2461 gcggatcact tcgcctctgc tggaggtcat cgaacgcgac cgctattggg ccagcgaccc
     2521 tgagccggac ttcacgcggc cggggctggt ggtcgacctc tcgaggcgga tgaagaccgg
     2581 tgacgtgctg cgctgcttca cccaggtcgc ggtggccggc gatctgaccc gcgcgggcgg
     2641 gatgagccac aaccagcgct acaccgcctt cctggtctct ggcccgcggc gcgacgtctg
     2701 gatcattgga tgcccggacg agatctcccc cggcgtctgg cgctagtgtg ctggatctga
     2761 agttcgccgc aatcagggcc acgctctgag cgaacttcgg aatcgggaca ctagaag
//
LOCUS       DATAJL010000900         4035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74717,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000900 DATAJL010000000
VERSION     DATAJL010000900.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4035
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74717"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1201
                     /locus_tag="VHN39_16965"
     CDS             <1..1201
                     /locus_tag="VHN39_16965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818087.1"
                     /translation="FRGGLASHAAAKDEVALLSLLIRGGFYEEARRFDTAHGLARRAA
                     GDAAYAQVAAYYALRDKLDPAILAFNRATARGHRDDKAFQATLTRIIFEAAHKLDPSV
                     SDPRVPLQKAFGLYGTVGETGGFASLHAGHVVQDDTLKIEQFGRRGEVRFMLIENMVS
                     NGYQSWLWDGMAQAGGWSGDKGTIVQVRPAYTPVGLRALASTEPEIAARLAARQPGLE
                     RQDRVALAKTPVAYLPGLAARLSKQADAQVAAKARAEADRSGQPYPRVYVKFYWDAVV
                     GHSITAHEGRHSLDNLQFANPNLPGAELEYRAKLSELMLAEFPRMPLSNIQTSEIGGS
                     SPHGLANTRVFEGYLRWMDAHRGEIAGFDPGVPTLEQLDRLTDAQVRAVARTLDPQFA
                     SAAAAGR"
     gene            complement(1198..2649)
                     /locus_tag="VHN39_16970"
     CDS             complement(1198..2649)
                     /locus_tag="VHN39_16970"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003165425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEX2818088.1"
                     /translation="MDIEFVAATAALSPKTALARLVHEGAALQGPLAQAAAASRFTGA
                     KGQTLDILAPVGVDAARLVLVGVGKAEGFDAIGVEHAAASAYNAVKASGLTTLRIELP
                     DAAADLAARAALGVRLGAYRFDKYRTKEPADKKPSVVKTQIVVGDADAALAAFAPLAA
                     LADAVSFTRDLVSEPPNVLYPGEFARRVKALESLGLEVEILGEPEMMKLGMGSLLGVG
                     QGSIRESQLAVMRWNGAADKTAQPIAFIGKGVCFDTGGISIKPADGMEDMKWDMGGAG
                     AVAGLMHVLAGRKAKVNAVGILGLVENMPDGNAYRPGDVLTSMSGQTIEVINTDAEGR
                     LVLADAVWYCQDRFKPKFMVDLATLTGAIIVALGNDLGGCYSNSEELAGNLISASNTE
                     GEPLWRMPLPAQYDKNIDSMIADMKNTGGRPGGSITAAMFIQRFTNGVPWAHLDIAGT
                     AWKKPSAFPTSPDGATGYGVRLLNRMVAEKYEG"
     gene            2814..3950
                     /gene="lptF"
                     /locus_tag="VHN39_16975"
     CDS             2814..3950
                     /gene="lptF"
                     /locus_tag="VHN39_16975"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HEX2818089.1"
                     /translation="MRLIDRYLLRQLLGPTLLAIAALTAVALLSQSLTGLDLIVNQRQ
                     SAIVFLDVTLLYMPQLINMILPIAVLVAALVALNRLHTEQEIVVCFAGGMSRWRVISP
                     AMRLAGTIAFLALLMNLWVQPVAYRALRDVLFEVKTDLAATLVREGEFTTPVPGLTVY
                     AQTIDSKGEMHNLFINQMKDDGTAYTYTAATGHIATRNGEPVLMLKDEATQHFSPRGV
                     LEYLTNSEYPFELNQLNNADEMVQYKFSDRYLHELLFPDLQQDWEKKNRKALLAEGNG
                     RLATPLYNIAFMAMALSAIIGGGFSRLGYVRRIAIVFAVAALVRILGFVAQSASEANV
                     WVNVLQYAIPLGATVIALRNVFRQRVSRFIDISHRPAHIAPVPA"
BASE COUNT          658 a         1386 c         1333 g          658 t
ORIGIN      
        1 gttccggggc gggctcgcgt cgcacgcggc ggcgaaggac gaggtggcgc tgctgagcct
       61 gctgatccgg ggcggattct acgaggaagc ccggcgcttc gacaccgccc atggcctggc
      121 caggcgcgcg gccggcgacg ccgcctacgc ccaggtggcc gcctattacg ccctgcgcga
      181 caagctcgac cccgcgatcc tggccttcaa tcgtgcgacg gcccgcggac atcgcgacga
      241 caaggcattc caggcgaccc tgacgcggat catcttcgag gcggcccaca aactcgaccc
      301 ctcggtgagc gatccgcggg tcccgttgca gaaggcgttc ggcctctacg ggaccgtcgg
      361 cgagaccggc ggattcgcca gcctgcacgc cgggcatgtg gtccaggacg acaccttgaa
      421 gatcgagcag ttcggccgcc ggggcgaggt ccgcttcatg ctgatcgaga acatggtctc
      481 caacggctac cagagctggc tgtgggatgg catggcccag gcgggcggct ggagcggcga
      541 taagggcacg atcgtgcagg tgcgcccggc ctatacgccc gtgggcctca gggcgctcgc
      601 cagcacggag ccggagatcg ccgcccggct ggccgcgcgg caacccggcc tggagcggca
      661 ggaccgggtg gcgctggcca agaccccggt cgcctatctt ccggggctgg cggccaggct
      721 ctccaaacag gccgacgccc aggtggccgc caaggcgcgc gcggaagcag atcgcagcgg
      781 tcagccctac ccgcgcgtct atgtcaaatt ctactgggac gccgtggtcg gccactcgat
      841 caccgcccac gagggccgcc actcgctgga caatctccag ttcgccaacc ccaacctgcc
      901 gggcgcggaa ctcgaatacc gcgccaagct atctgagctg atgctggcgg aattcccgcg
      961 catgccgctg tccaacatcc agacctcgga gatcggaggc agctcgccac acggcctggc
     1021 caacacgcgg gtgttcgagg gctatttgcg ctggatggac gcccatcgcg gcgaaatcgc
     1081 cggcttcgac cccggcgttc cgaccctgga gcagctggac aggctgacgg atgcgcaagt
     1141 ccgcgccgtc gcacgcaccc tcgatcccca gttcgcgagc gcggcggcgg cggggcgcta
     1201 gccctcgtac ttttccgcca ccatgcggtt cagcaggcgc acgccataac cggtggcgcc
     1261 gtccgggctg gtggggaagg ctgacggctt cttccaggcg gtgcccgcga tatcgaggtg
     1321 ggcccagggc acgccgttgg tgaagcgctg gatgaacatg gccgcggtga tcgagccgcc
     1381 gggacggccg ccggtgttct tcatgtcggc gatcattgag tcgatgttct tgtcgtactg
     1441 ggccggcagc ggcatccgcc atagcggctc gccctcggtg ttggaggcgg aaatcaggtt
     1501 gccggccagc tcctcgctgt tcgagtagca gccacccagg tcgttcccca gcgcgacgat
     1561 gatggcgcct gtgagcgtcg ccagatcgac catgaatttc ggcttgaagc ggtcctgaca
     1621 gtaccagacg gcgtcggcca gcacgaggcg gccctcggcg tcggtgttga tgacctcgat
     1681 ggtctggcca gacatggagg tgagcacgtc gccggggcga taggcgttgc cgtcgggcat
     1741 gttctccacc aggcccagga tgcccaccgc gttgaccttg gccttgcggc cggccagcac
     1801 atgcatcagg ccagccaccg cgccagcccc acccatgtcc cacttcatgt cctccatgcc
     1861 gtcggccggc ttgatggaga tgccgccggt gtcgaagcag acacccttgc cgatgaaggc
     1921 gatgggctgg gcggtcttgt cggccgcgcc gttccaacgc atcaccgcca gctggctctc
     1981 gcggatcgag ccttgaccga cgccgagcag cgagcccatg ccgagcttca tcatctccgg
     2041 ctcgccgaga atctcgacct ccaggcccag actctccagc gccttcaccc ggcgcgcgaa
     2101 ctcacccgga tagaggacgt tcggcggctc ggagaccaga tcgcgggtga aactgaccgc
     2161 atcggccagg gccgccagag gcgcgaaggc ggccagcgcc gcgtcagcgt cgccgacgac
     2221 aatctgggtc ttcacgacgg agggcttttt gtccgccggt tccttggtcc ggtacttgtc
     2281 gaaccggtag gcgcccaggc ggacgccgag cgcggcgcgg gcggccagat cggcggcggc
     2341 gtccggcaac tcgatgcgca gggtggtaag gcccgaggct ttgaccgcgt tgtaggcgct
     2401 ggccgcggca tgctcgacgc cgatcgcgtc gaagccctcg gccttgccga cccccaccag
     2461 caccagccgt gcggcgtcta cgccgaccgg cgccaggata tccagggtct ggcccttggc
     2521 gccggtgaac cggctggcgg cggcggcctg agccaggggg ccctgcagag ccgcgccttc
     2581 atggaccagc cgcgcaagcg cggtcttcgg cgacagggcg gcggtggcgg cgacgaactc
     2641 gatatccata cggggtctct cacgtgaaag ggtcgggcca aacaggcaga tcggagcctt
     2701 cagggccgtc ggcgcgcggc gcccggcggt tgtctgatac ggcgacgcat ggtttagatc
     2761 agctccgcgg cgggggcgcg gcaaaaactc cgagcgagcc caatttctta cccatgcgcc
     2821 tgatcgaccg ctacctgctc cgccagctgc ttggccccac gcttctcgcc atcgcggcgc
     2881 tgacggcggt ggcgctgctg agccagagcc tcacgggcct cgatctgatc gtcaaccagc
     2941 ggcagagcgc catcgtcttc ctggatgtca cgctcctcta catgccccag ctgatcaaca
     3001 tgatcctgcc tatcgcggtg ctggtggcgg ccctggtggc gctcaaccgc ctgcacaccg
     3061 agcaggagat cgtggtttgt ttcgcgggcg gcatgagccg ttggcgggtg atctccccgg
     3121 ccatgcgcct ggcgggcacc atcgccttcc tggcgctcct gatgaacctc tgggtgcagc
     3181 cagtggccta ccgcgccctg cgcgatgtgc tgttcgaggt gaaaacggac ctcgccgcca
     3241 ccctggtgcg cgaaggcgag ttcaccacgc cggtgccggg gcttactgtc tatgcacaaa
     3301 ccattgatag taaaggagaa atgcacaatc ttttcatcaa ccagatgaag gatgatggca
     3361 cggcctatac ctacaccgcc gccaccggcc acatcgccac gcgcaacggc gagcctgtgc
     3421 tgatgctaaa ggacgaggcg acccagcact tctcgccgcg cggcgtgctc gagtacctca
     3481 ccaacagcga atatcccttc gaacttaacc agctgaacaa tgccgacgag atggtccagt
     3541 acaagttctc ggaccggtac ctgcacgagc tcctattccc cgacctgcag caggattggg
     3601 agaagaagaa ccgcaaggcc ctgctggccg agggcaacgg gcggctcgcc acaccgctct
     3661 acaacattgc tttcatggcc atggcgctct cggcgatcat cggcggcggg ttctcgcgcc
     3721 tgggctacgt gcgccgcata gcgatcgtct tcgccgtcgc ggccctggtt cggattctgg
     3781 gcttcgtggc ccagtcggcc agcgaagcca atgtctgggt gaatgtcctg caatacgcca
     3841 tcccactcgg cgccacggtc atcgctctgc gcaacgtctt ccgccagcga gtcagccgct
     3901 tcatcgacat cagccaccgc ccggcgcaca tcgcgccggt tcccgcatga gctcgcggat
     3961 cgagagatat gtcctgctgc gaacgctgac gggcgcgggc gcggcgctgg cggtgatctc
     4021 cgcggtgatc ctgct
//
LOCUS       DATAJL010000901         1931 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_124144,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000901 DATAJL010000000
VERSION     DATAJL010000901.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124144"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VHN39_16980"
     CDS             <1..321
                     /locus_tag="VHN39_16980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HEX2818090.1"
                     /translation="LLSGEPWIEANFKEDQLAHMKVGQAVTIKVDAYPDADIKGHVAS
                     FSPGTGQAFSALPAQNATGNWVKVVQRLPVRISFDKPPPDMAGRAGLSAKVTVDVRAA
                     GASR"
     gene            334..1860
                     /locus_tag="VHN39_16985"
     CDS             334..1860
                     /locus_tag="VHN39_16985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA];
                     GO_process: GO:0009410 - response to xenobiotic stimulus
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEX2818091.1"
                     /translation="MVTEHDSRNRWPITISIMLATVMNSLDTTIANVALPHMQGSVSA
                     SPEQITWVLTSYIVAAAIMTPLSGWLADRIGRKRMFLISIAGFTAASMLCGIATSLPE
                     IVLFRVLQGVFGAALIPLSQAVLLDINPPEKHGQAMAIWGAGAILGPVLGPALGGYFT
                     EYFSWRWCFFINLPVGILAFLGVLFFISGDRLAKAKRFDFLGFGMLTLFIASFQMVLD
                     RGPSQDWFQSREIWTETILAAVGLWVFVIHTITTDHPFFDRALIRDRNFVTASVFGFF
                     VGILLFSTMALLPPMMQTLLGYPVLTSGLVSMPRGLGSFVAMFLVGQLIGRIDTRLIL
                     FVGLILSCVALLQMINFDLAMGVMPFLTSGIIQGLGVGLLFVPLSTLAFATIPPHLRP
                     EGSSVYTLVRNLGSSVGISIMNALVVSNSQTMHASLAAKVVTSDPVVRATLPRMFDPA
                     SAAGITSLNGEITRQASMVAYVDDFRLMLVITIACMPMLLLMRRPRRAGGEPLHAVVD
                     "
BASE COUNT          284 a          680 c          581 g          386 t
ORIGIN      
        1 ctgctctccg gcgagccctg gatcgaggcc aatttcaagg aagaccagct cgcccacatg
       61 aaggtcggcc aggcggtcac catcaaggtc gacgcctatc ccgatgccga catcaaaggc
      121 catgtggcga gcttctcgcc cggcaccggc caggccttct ccgcgcttcc ggcccagaac
      181 gccaccggca actgggtgaa ggtcgttcag cgcctgccgg tccgcatcag cttcgataag
      241 ccgccgccgg acatggcggg ccgcgccggc ctttcggcga aggtgacggt cgatgtgcgc
      301 gcggccggcg cgagccgcta aggcctgacc gccatggtca ccgaacacga ctcccgcaat
      361 cgctggccga tcaccatctc gatcatgctg gcgacggtga tgaactcgct ggacacgacg
      421 atcgccaacg tggccctgcc gcacatgcag ggctcggtct cggcctcgcc tgagcagatc
      481 acctgggttc tgacctccta catcgtcgcc gccgcgatca tgacgccgct ctccggctgg
      541 ctcgccgacc gcatcggccg caagcggatg ttcctgatct caatcgccgg cttcaccgcg
      601 gcttcgatgc tctgcggcat cgccaccagc ctgccggaga tcgtgctgtt ccgcgtcctg
      661 caaggcgtgt tcggcgcggc cctgatcccg ctgtcgcagg cggtgctgct ggacatcaac
      721 ccgccggaaa agcatggcca agccatggcg atctggggcg cgggcgcgat cctcgggccg
      781 gtgctgggcc cggcgctcgg gggctatttc accgagtatt tctcctggcg ctggtgcttc
      841 ttcatcaacc tgccggtggg gattctcgcc ttcctggggg tgctgttctt catctcgggc
      901 gaccgcctcg ccaaggccaa acggttcgac ttcctgggct ttgggatgct caccctgttc
      961 atcgcatcgt tccagatggt gctggaccgg ggccccagcc aggactggtt ccagtcccgc
     1021 gagatctgga ccgagacaat cctggccgcg gtgggccttt gggtcttcgt gatccacacc
     1081 atcaccaccg accatccgtt cttcgaccgg gcgctgatcc gcgaccgcaa cttcgtcacc
     1141 gccagcgttt tcggcttttt cgtcggcatt ctgctgttct ccaccatggc gctgctgccg
     1201 ccgatgatgc agacgctgct gggctatccg gtgctgacct caggcttagt cagcatgccg
     1261 cgcggcctcg gctccttcgt ggccatgttc ctggtgggcc agctgatcgg caggatcgac
     1321 acccggctga tcctgttcgt gggtctgatc ctgagctgcg tggcgctgct gcagatgatc
     1381 aacttcgacc ttgcgatggg cgtcatgccg ttcctgacct ccgggataat ccagggcctg
     1441 ggcgtggggc tgttgttcgt gccgctctcg acgctcgcct tcgccaccat accgccgcac
     1501 ctgcggcctg agggctcgag cgtctacacg ctggtccgca acctgggctc cagcgtcggc
     1561 atctcgatca tgaacgccct ggtggtatcc aacagccaga ccatgcacgc ctcgctggcc
     1621 gccaaggtgg tcacgtcaga tcccgtggtc cgcgcgactc tgcccaggat gttcgatccc
     1681 gccagcgcgg ccgggatcac ctccctcaac ggagagatca cccgacaagc gtccatggtc
     1741 gcctacgtcg acgatttcag actgatgtta gtcatcacca tcgcctgcat gcccatgttg
     1801 ctgcttatgc gcagacccag gcgcgcgggt ggggagcccc ttcatgccgt tgtcgattaa
     1861 gcccctccac ctgctggcgg tttccgcttc ggcgctcgca ctcaccgcgt gcgcgaccgt
     1921 cggccccaac t
//
LOCUS       DATAJL010000902         2990 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74824,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000902 DATAJL010000000
VERSION     DATAJL010000902.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74824"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..430)
                     /gene="thpR"
                     /locus_tag="VHN39_16990"
     CDS             complement(<1..430)
                     /gene="thpR"
                     /locus_tag="VHN39_16990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HEX2818092.1"
                     /translation="MIRLFAALPIPEDIGLALARRQTGVEGARWRPLEALHVTLRFFG
                     DIREDIARDLDAELTSLRGAAFDLEFSGVGAFGEGPDLNVLWAGVAENEPLRRLARAC
                     ETAARRAGLKPEPRHFRPHLTLAYLRHPDPAEVAVWIQANN"
     gene            603..1358
                     /locus_tag="VHN39_16995"
     CDS             603..1358
                     /locus_tag="VHN39_16995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEX2818093.1"
                     /translation="MSDFNRGGSARSIPADRADMSVDAGLRSFMLGVYNKVALGLVLS
                     AGLAFLTGAYPPVRDLMFRVTVDGRLAGFTMLGMVVVFAPLVVLLMSGFAMRNPTAKG
                     AGALYWTIVSLMGASLGVVVLVYTGASIASTFLITAAAFGGLSLVGYTTKKDLTGFGS
                     FLIMGVIGLILASLVNMFLHMAALAFIVNILGVLIFSGLIAYDTQRLKMTYYQLGGDQ
                     QAMGVATNYGALSLYINFINLFQFLLSILGSRR"
     gene            complement(1424..1759)
                     /locus_tag="VHN39_17000"
     CDS             complement(1424..1759)
                     /locus_tag="VHN39_17000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2794 domain-containing protein"
                     /protein_id="HEX2818094.1"
                     /translation="MAFDTSHASPRQATVFFERRELTRLLSLYGRMVSAGEWRDYAID
                     GLTESAVFSVYKRSSEAPLYRIEKRPALARRQGAWAVLGQGGMILRRGHDLEQVLRFF
                     DRGRFKVVD"
     gene            complement(2057..2764)
                     /locus_tag="VHN39_17005"
     CDS             complement(2057..2764)
                     /locus_tag="VHN39_17005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013081229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1223 domain-containing protein"
                     /protein_id="HEX2818095.1"
                     /translation="MRKAALFSLALLALPFLFSAGAAAARPPVVVELYTAQGCASCGK
                     ANAHVAELADKKGVLALTFSVDYWDYLGWADSFAKPEFAERQKAYVARLALREPYTPQ
                     VVVDGQAQVSGSKPEKLDALVAGAAKKVGNPPDLRFVGPRVYVGSARAPKGGGEVWLI
                     RYDPREQDVAVKSGDNKGQTIPHRNVVREVTRLGAWRGKPVAFRLPAASEDGLKTVVL
                     VQVGHGGRVIGAGEPRV"
BASE COUNT          483 a         1052 c          983 g          472 t
ORIGIN      
        1 ggttattggc ctggatccag acggcgacct cggcgggatc ggggtggcgc aggtaggcca
       61 gcgtcaggtg cgggcgaaag tgccggggct cgggcttcag gcccgcgcgg cgcgcggcgg
      121 tctcgcaggc cctggccagg cgccgcaggg gctcgttctc ggccacgccg gcccacagga
      181 cattcaggtc tggcccctcg ccgaaggcgc cgacgcctga gaattcgagg tcgaaggcgg
      241 ctccgcgcag actggtcagc tcggcgtcca ggtcgcgggc gatgtcctcg cggatgtccc
      301 cgaagaacct gagcgtcaca tggagcgcct ccagcggccg ccagcgcgcg ccctcgacgc
      361 cggtctggcg gcgggcaagc gccaggccga tatcttccgg gatcggcaac gcggcgaaga
      421 gccggatcat gggtctacct aacccaggcc gccggcgacc gcaaaacggc cccgaatcgc
      481 gtctcaaacc accgcccaaa acttaacaag accttgatca acaaggcctt gcttccgccg
      541 caccggagcc cgatatttcc catgcgtccg atcgtggacg cctgaacaag ggttttgctc
      601 acatgagcga cttcaaccgc ggcggctccg cgcgctcgat ccccgcggat cgcgccgaca
      661 tgtcggtgga cgcgggtctc cgcagcttca tgctcggggt ctacaacaag gtggccctgg
      721 gcctcgtgct ctcggctggc ctggccttcc tgaccggcgc ctatccgccg gtgcgggacc
      781 tgatgttccg cgtcaccgtg gacgggcggc tggccggctt caccatgctg ggcatggtcg
      841 tggtgttcgc gccgctggtg gtgctgctga tgtcggggtt cgcgatgcgc aacccgacgg
      901 ccaagggcgc cggcgcgctc tactggacca tcgtcagcct gatgggcgcc tcgctgggcg
      961 tcgtggtgct ggtctatacc ggcgcctcga tcgcctcgac ctttctgatc accgccgccg
     1021 cgttcggcgg gctctccctg gtgggctaca ccaccaagaa ggacctgacc ggcttcggca
     1081 gcttcctgat catgggggtg atcggcctga tcctggcgag cctggtcaac atgttcctgc
     1141 acatggcggc gctggccttc atcgtgaaca tcctgggcgt gctgatcttc tccggcctga
     1201 tcgcctacga cacccagcgc ctgaagatga cctactacca gctgggcggc gatcagcagg
     1261 ccatgggcgt ggcgaccaac tacggcgcgc tcagcctcta catcaacttc atcaacctct
     1321 tccaattcct gctgagcatc ctgggcagcc gccgctaggc cgagccccgc aggacgaacg
     1381 tcagagcccc ggcgggaaac ctccggggct tcttctttgg gggctagtcc accaccttga
     1441 accggccgcg gtcgaagaag cgcaggacct gctccaggtc gtggccgcgg cgcaggatca
     1501 tgccgccctg gcccagcacc gcccaggcgc cctggcggcg cgccagcgcc gggcgcttct
     1561 cgatccggta cagcggcgcc tcggagctgc gcttgtagac cgagaacacc gccgattcgg
     1621 tcaggccatc gatggcgtag tcgcgccatt cgccagcgga aaccatgcgg ccatagaggg
     1681 aaagcaggcg ggtgagctcg cgccgctcga agaagacggt cgcctgacgc ggcgacgcgt
     1741 gggacgtgtc gaaagccatc gaccctgagc ctagacccga atcgccgccg cgagccagac
     1801 ccggcgcgcc cattgcaacg ctcccgccgc gaaatgacct tattcccgac ccgcgagcgc
     1861 ctgatgaagc cccgatctta cgatagtcgg ttggtcagaa acggcggtcc cggatcctga
     1921 acagcccccc cagcccccca ggatcggcgg actggccaat cgacgataca tctcctccta
     1981 ataccgaacc cccgcgggtg ctctccagcc gcgggggtct tggtatctgc ggcaagccgc
     2041 cggggaaatc acccccctaa accctgggct ctccggcgcc gatgacccgg ccgccatggc
     2101 ccacctgaac caggaccacc gtcttcaggc catcctccga cgccgcgggc aggcggaagg
     2161 ccaccggctt gccgcgccag gcgcccaggc gggtcacctc acgcacgaca ttgcggtggg
     2221 gaatggtctg gcccttgttg tcgccggact tcacggccac gtcctgctcg cgcggatcgt
     2281 agcggatcag ccagacctcg ccgccgccct tgggcgcgcg ggccgagccc acatagacgc
     2341 ggggccccac gaaacgcagg tcgggcggat tgcccacctt cttggccgcg ccggctacca
     2401 gggcgtcgag cttctccggc ttcgagcccg aaacctgggc ctgaccgtcg accaccacct
     2461 ggggcgtata gggttcgcga agcgcgaggc gggccacata ggccttctgc cgctcggcga
     2521 actcgggctt tgcgaagctg tcggcccagc ctagatagtc ccagtagtcg acggagaagg
     2581 tgagcgcgag cacgcccttc ttgtcggcga gctccgccac atgggcgttg gccttgccgc
     2641 aggaggcgca gccctgcgcc gtgtagagct cgaccaccac gggaggcctg gccgccgccg
     2701 cccctgctga gaacaggaac ggcagggcga gcagggccag gctgaaaagc gctgctttcc
     2761 gcatcgcttc gggcttaaag gcgctgctgc gccctgtaaa ttgcaacaag acgtgagtgg
     2821 agcgagggcg acgcatctga gcgccgcccc cctcgccctg tgtcaggccg ccgagcgcgc
     2881 caggttgcgc agcacgtagt tcagcacgcc gccgttcttg taatactcaa gctccgtggg
     2941 cgtatcgatg cggcagcgga ccgggaagcg cgcgatgcgg ccgtcggagg
//
LOCUS       DATAJL010000903         1682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74840,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000903 DATAJL010000000
VERSION     DATAJL010000903.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74840"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..433)
                     /gene="folP"
                     /locus_tag="VHN39_17010"
     CDS             complement(<1..433)
                     /gene="folP"
                     /locus_tag="VHN39_17010"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX2818096.1"
                     /translation="MTSASASPPVRVMPVRVLGVINVTQDSFSDGGRFDDLSAAILQA
                     RRLIAEGADILDIGGESTRPGATPVSEDQEIDRVVPLIRAIRAESAIPISIDTRSPAV
                     ARAAVEAGATMWNDVSALRHAPDSLAAAADLGCEVVLMHMQG"
     gene            complement(508..>1682)
                     /locus_tag="VHN39_17015"
     CDS             complement(508..>1682)
                     /locus_tag="VHN39_17015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2818097.1"
                     /translation="DMFEQAKKNAPCIIFIDEIDAVGRHRGAGLGGGNDEREQTLNQL
                     LVEMDGFESNEGIILIAATNRPDVLDPALLRPGRFDRQVVVPNPDVNGRERILRVHMK
                     NVPLAADVETKVIARGTPGFSGADLANLVNEAALMAARKNRRMVTMRDFEEAKDKVMM
                     GAERRSMVMTEDEKRNTAYHEGGHALVALTVPAADPVHKATIIPRGRALGMVMQLPEG
                     DRYSVNYEQMTSRLAIMMGGRVAEELIFGKDKVTSGASSDIQAATGLARNMVTRWGYS
                     DKLGLVSYGDNQEEVFLGHSVSRTQNVSEETANIIDAEVKRLVQAGYDEAKKILTKRL
                     ADLHTLAKALLEYETLSGDEIIGALKGVAPNREDSDAKRPTGPAVAVPISPKPEPA"
BASE COUNT          237 a          551 c          598 g          296 t
ORIGIN      
        1 cgccctgcat gtgcatcagc acgacctcgc aaccgaggtc ggcggcggcc gccaggctgt
       61 ccggggcatg gcgcagggcg gagacgtcgt tccacatcgt ggcgcccgcc tcgacggccg
      121 cgcgggccac ggcgggcgac ctggtgtcga tggagatcgg aatggcgctc tcggcgcgga
      181 tcgcccggat cagcgggacg acccggtcga tctcctggtc ctctgaaacc ggcgtggcgc
      241 ccggccgggt ggactccccg ccgatatcga ggatatcggc gccctcggcg atcagtcgcc
      301 gggcctgcag gatcgccgcg ctgaggtcat cgaaccgccc gccgtcggag aagctgtcct
      361 gagtgacgtt gatcacgccc agcacgcgaa cgggcatcac gcgaacgggc ggagaagcgg
      421 aggccgaggt catcgcggcc ctcatagacg aaaaagggcg gccccgtcgc cggtggccgc
      481 ccttgatcgg ttcagatgcg ccgcgcctca ggccggctcg ggcttgggcg agatcggcac
      541 cgccacggcg ggacccgtcg ggcgcttggc gtccgagtcc tcgcggttcg gggccacgcc
      601 tttgagggcg ccgatgatct cgtcgccgct cagggtctcg tactcgagga gcgccttggc
      661 gagcgtatgc agatcggcga gccgcttggt gaggatcttc ttggcctcgt cgtagcccgc
      721 ctgcaccaga cgcttcacct cggcgtcgat gatgttggcg gtttcttcgg agacgttctg
      781 ggtgcgcgac accgagtggc cgaggaagac ctcttcctgg ttgtcgccgt aggagacgag
      841 gcccagcttg tccgaatagc cccagcgggt gaccatgttg cgggccaggc ccgtggccgc
      901 ctggatgtcg ctggaggcgc cggaggtcac cttatccttg ccgaagatca gctcttcggc
      961 gacccggccg cccatcatga tcgccaaccg cgaggtcatc tgttcgtagt tgaccgaata
     1021 gcggtcgccc tcgggcagct gcatgaccat gcccagcgca cggccgcgcg ggatgatcgt
     1081 cgccttgtgc accgggtcgg cggcggggac ggtcagcgcc accagggcgt ggccgccctc
     1141 gtggtaggcg gtgttgcgct tttcgtcctc ggtcatgacc atggagcggc gctcggcgcc
     1201 catcatgacc ttgtccttgg cttcctcgaa gtcgcgcatg gtgaccatgc ggcggttctt
     1261 ccgcgcggcc atcagggcgg cttcgttgac cagattggcg aggtcggcgc cggagaagcc
     1321 cggggttccg cgggcgatga ccttggtctc gacgtcggcg gccaggggca cgttcttcat
     1381 gtggacgcgc aggatgcgct cacggccgtt cacgtcgggg ttcggcacca cgacctggcg
     1441 gtcgaagcgg ccgggccgca gcagcgccgg gtccaggaca tcgggacggt tggtggcggc
     1501 gatcaggatg atgccttcgt tggactcgaa gccgtccatc tcgaccagca gctggttcag
     1561 cgtctgctcg cgctcgtcgt tgccgccgcc gaggcccgca ccacgatggc ggccgacagc
     1621 gtcgatttcg tcgatgaaga tgatgcacgg agcatttttc ttcgcctgct cgaacatgtc
     1681 gc
//
LOCUS       DATAJL010000904         1745 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101472,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000904 DATAJL010000000
VERSION     DATAJL010000904.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101472"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VHN39_17020"
     CDS             <1..215
                     /locus_tag="VHN39_17020"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522280.1"
                     /note="catalyzes the transamination of D-amino acids and
                     their alpha-keto acids; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="D-amino acid aminotransferase"
                     /protein_id="HEX2818098.1"
                     /translation="VIRREGLEVDERPFTPAEAVCAQEAFITGAGTLVLPVITVDGKP
                     VGEGRPGPVAQRLRRLYIEQAKATAI"
     gene            316..561
                     /gene="hfq"
                     /locus_tag="VHN39_17025"
     CDS             316..561
                     /gene="hfq"
                     /locus_tag="VHN39_17025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HEX2818099.1"
                     /translation="MSEKKQNLQDTFLNSVRKSKTPLTIFLVNGVKLQGVVSWFDNFC
                     VLLRRDGQSQLVYKHAISTIMPAQPVQLYEPGEDETD"
     gene            558..>1745
                     /gene="hflX"
                     /locus_tag="VHN39_17030"
     CDS             558..>1745
                     /gene="hflX"
                     /locus_tag="VHN39_17030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX2818100.1"
                     /translation="MSSSKPVDREAPVQGAIVIHPDRDGRISARAADARLEEAVGLAL
                     ALDLDVRETLIATLRRLTPATLFGKGKVEEIGHIIELAEIDVAVIDDALTPVQQRNLE
                     KAWNCKVIDRTGLILEIFARRARTREGRLQVELARLSYERSRLVRTWTHLERQRGGFG
                     VMGGPGETQIETDRRLIADKIRKLKLELEEVRRTRTLQRSARKRHPYPTVALVGYTNA
                     GKSTLFNRLTKAEVVAEDMLFATLDPTLRMLKLPDGRPAIMSDTVGFISDLPHELVEA
                     FRATLEEVKEADVVLHVRDIASAESSAQAGDVRKVLARLGVDMDERSILEVWNKADLL
                     SADDLETVRGDARRAHPPAIPVSAVTGQGCENLLDAIAGLVDEAPPVDVFTPVGEGAA
                     IAWL"
BASE COUNT          312 a          602 c          574 g          257 t
ORIGIN      
        1 acgtcattcg ccgcgaaggc ctggaggtcg acgagcggcc attcaccccc gccgaggcgg
       61 tctgcgccca ggaggcgttc atcaccggcg cggggacttt ggtgctgccg gtgatcaccg
      121 tggacggcaa gccggtgggc gaggggaggc ccggaccggt ggcgcagagg cttcggcgtc
      181 tctatatcga gcaggcgaag gcaaccgcca tctgaacggc gctcgacgat tgcgcctgtc
      241 gcaaaacgcg tactagctaa ctttcgtgtg tgggcggcgc tttggctgcc cgataaaaag
      301 aagaggcgaa aagccatgag tgagaagaaa caaaacctgc aggacacgtt cctgaacagc
      361 gtgcgcaagt cgaagacgcc gctcaccatc ttcctggtca acggcgtgaa gctgcagggc
      421 gtggtcagct ggttcgacaa cttctgcgtc ctgcttcgcc gcgacgggca gtcccagctc
      481 gtctacaaac acgccatctc caccatcatg ccggcgcaac ctgtgcagct ctatgagccc
      541 ggcgaagacg agaccgattg agctcttcaa aacccgtaga tcgtgaggcg ccggtccagg
      601 gcgccattgt cattcacccc gaccgggacg gacgcatctc cgcccgggcc gccgatgcgc
      661 gcctggagga ggctgtcggc ctggctttgg cgctggacct cgacgtccgc gagaccctga
      721 tcgcgaccct gcgccgcctg acgcccgcca ccctgttcgg caagggcaag gttgaggaaa
      781 tcggtcacat catcgaactg gcggaaatcg acgtcgccgt gatcgacgac gccctgacgc
      841 ctgtgcagca gcgcaatctc gagaaggcct ggaactgcaa ggtcatcgac cgcaccggtc
      901 tgatcctgga gatcttcgcc cgccgcgcgc ggacccgcga aggccggctg caggtggagc
      961 tggccaggct ctcctacgaa cgctcgcgcc tggtgcgcac ctggacccac ctggaacgcc
     1021 agcgcggcgg attcggggtc atgggcggcc ccggcgaaac ccagatcgag accgaccgcc
     1081 ggctgatcgc cgacaagatc cgcaagctga agctggaact ggaggaggtg cgccgcaccc
     1141 gcaccctgca gcgttcggcc cgcaagcggc atccgtaccc gaccgtggcg ctggtgggct
     1201 acaccaacgc cggcaagtcg accctgttca accgcctgac caaggccgag gtggtcgccg
     1261 aggacatgct gttcgccacc ctggacccga cgctgcggat gctgaagctg ccggacgggc
     1321 ggccggcgat catgtccgac accgtgggct tcatctccga cctgccgcac gagctggtcg
     1381 aggccttccg cgccacgctg gaggaggtca aggaggccga cgtcgtcctg cacgtgcgag
     1441 atatcgccag cgccgagtcc agcgcccagg ccggcgacgt ccgcaaggtg ctggcccgcc
     1501 tcggcgtcga catggacgaa cgcagcatcc tggaggtctg gaacaaggcc gacctgctgt
     1561 cggccgacga cctcgaaacc gtccgcggcg acgcgcgccg cgcccacccg ccggcgatcc
     1621 ccgtctcggc ggtcaccggc caaggttgcg agaacctgct cgacgccatc gccggcctcg
     1681 tcgacgaggc cccgccggtc gacgtcttca cgccggtggg tgagggcgcc gccatcgcct
     1741 ggctc
//
LOCUS       DATAJL010000905         2869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88480,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000905 DATAJL010000000
VERSION     DATAJL010000905.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88480"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..480
                     /locus_tag="VHN39_17035"
     CDS             <1..480
                     /locus_tag="VHN39_17035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818101.1"
                     /translation="LSCAPAMYDELWVGGKCAYKLEPVVADGGEIVIYAPHIKEISVV
                     HGALIRQIGYHVRDYFLKQPGRFPGVPRGVLAHSTHVKGIGRYENGVETPRITVTLAT
                     GISAEECRAVNLGYRDHRTIDAAAWQDREDEGMLYVPKAGETLYRLKNDPFTTRVQT"
     gene            477..1571
                     /locus_tag="VHN39_17040"
     CDS             477..1571
                     /locus_tag="VHN39_17040"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX2818102.1"
                     /translation="MSERSHEKLTIRPDGALDFLSLGALVHRLDPGIIPFRKASHCDI
                     HVSGGEFNVAANLADCFGMKAGLASAMVDYPIGDLIGERVRAMGVKPFYKRFAHNGVN
                     GPNMATVYSDRGAGMRAPVVFYNRANEAAAELKPGDFDWATIFGSGVRWFHSGGIFAA
                     LSKTTGALIAEGMKAAKAAGAITSFDLNFREKLWNLWGGQKVAVEVVEQIVQNVDVLV
                     GNEEDLQKGLGIAGPEVAAKSKLDPSAFVGMIDKVVAKHPHVKAVATTLREVHSTNRH
                     SWSAVAWVDGKTHQAPTAELDVVDRVGGGDGFAAGFIYGLLSGAAPQEAVSLGWAHGA
                     LLTTFPGDTTMATLDQVRAFAKGGSARIQR"
     gene            1629..>2869
                     /gene="gnd"
                     /locus_tag="VHN39_17045"
     CDS             1629..>2869
                     /gene="gnd"
                     /locus_tag="VHN39_17045"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:NF006765.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004616 - phosphogluconate dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HEX2818103.1"
                     /translation="MEKADIGLVGLAVMGENLILNMESRGYTVAVFNRTVDKVDKFMA
                     GRAKGKKIIGAHTLQELVTSLKAPRKVMLMVKAGAAVDEFIDHLTPLLEKGDIIIDGG
                     NSHFPDTIRRTKALEAKGLLYIGTGVSGGEEGALKGPSIMPGGSPAAWPAVKPIFQAI
                     AAKVEDGTPCCDWVGNDGAGHFVKMVHNGIEYGDMQLICESYQIMKDLLGMSADEMHE
                     VFAEGNKGDLDSYLIEITRDILGFKDKDGSPLVDKILDTAGQKGTGKWTSVTALDLGI
                     PLTLISEAVFARILSATKEERVAASKILRGPTPKFTGDKKAFITDIGHALYASKIVSY
                     AQGYQMMQAAAAEYKWDLSYGGIALLWRGGCIIRSKFLGKIKEAYDADPKLSNLLLAP
                     FFQEKIEAIQESWRRVVATAA"
BASE COUNT          552 a          898 c          979 g          440 t
ORIGIN      
        1 ctgtcgtgcg cgccggcgat gtacgacgag ctgtgggtgg gcggaaagtg cgcctataag
       61 ctggagccgg tcgtcgccga cggcggcgag atcgtcatct acgcgccgca catcaaggag
      121 atctccgtcg tgcacggcgc gctcattcgc cagatcggct accacgtccg cgactatttc
      181 ctgaagcagc cggggcgatt cccgggcgtg ccgcgcggcg tgctggccca ctcgacgcac
      241 gtcaaaggga tcgggcggta tgaaaacggc gtggagacac cgcggatcac ggtgacgctg
      301 gcgaccggga tctccgccga ggagtgccgc gcggtgaacc tcggctaccg cgatcaccgc
      361 acgatcgacg ccgccgcctg gcaggatcga gaggacgaag ggatgctcta cgtccccaag
      421 gccggcgaga cgctttaccg cttgaagaac gatccgttca cgacgagggt tcagacatga
      481 gcgaaagaag tcacgagaag ttgaccatcc gcccagatgg ggcgctcgac tttctcagcc
      541 tgggggcgct ggtgcaccgg ctcgaccccg gcatcatccc cttccgcaag gccagccact
      601 gcgacatcca cgtcagcggc ggcgagttca acgtggcagc caacctggcc gactgcttcg
      661 gcatgaaggc cggcctcgcc agcgcgatgg tcgactaccc gatcggcgac ctcatcggcg
      721 aacgggtgcg ggccatgggc gtgaagccgt tctacaagcg cttcgcgcac aatggcgtca
      781 acggcccgaa catggcgacc gtctacagcg atcgcggagc cggcatgcgc gcgccggtcg
      841 tcttctacaa ccgcgccaac gaggcggcgg cggagctcaa gccaggcgac ttcgactggg
      901 cgacgatctt cgggagtgga gtccgttggt tccacagcgg cggcatcttc gcggcgctgt
      961 cgaagacgac tggcgccctc atcgccgagg ggatgaaggc tgccaaggcg gcgggcgcaa
     1021 tcaccagctt cgacctcaac ttccgcgaga agctctggaa cctctggggt ggccaaaagg
     1081 tcgccgtcga ggtggtcgag cagatcgtcc agaacgtcga cgtgctggtc ggcaacgagg
     1141 aagatctcca gaaggggctg gggatcgcgg gccccgaggt ggcggccaag tccaagctcg
     1201 atccctccgc cttcgtgggg atgatcgaca aggtggtcgc caagcacccc cacgtcaagg
     1261 cggtcgcaac cacgctgcgc gaggtccatt cgaccaaccg ccacagctgg agcgccgtcg
     1321 cctgggtcga cggcaagacc caccaggccc cgaccgcgga gctggacgtg gtcgatcggg
     1381 tcggcggcgg cgacggtttc gcggccggct tcatctatgg gctgctctcg ggcgccgccc
     1441 cccaggaggc tgtttctttg ggttgggcgc atggcgcctt gctcacgacc ttcccaggcg
     1501 atacgaccat ggccacgctg gaccaggtcc gggccttcgc caaagggggc tcggcgcgga
     1561 ttcagcgctg aggcctccac gaatctttca accaattttg cacggaacga aaaggacaaa
     1621 acacgaaaat ggaaaaggcg gatatcgggc tcgtcgggtt ggcggtgatg ggcgagaacc
     1681 tcatcctcaa catggagagc cgcggctaca ccgtggcggt cttcaaccgg acggtcgaca
     1741 aggtcgacaa gttcatggcc gggcgggcca aggggaagaa gatcatcggc gcgcacacgc
     1801 tgcaggagct ggtgacgtcg ctgaaggcgc cgcgcaaggt gatgttgatg gtgaaggccg
     1861 gcgcggccgt cgacgagttc atcgatcacc tgacgccgct cttggagaag ggcgacatca
     1921 tcatcgatgg tggcaactcg cacttccccg acaccatccg ccggacgaag gcgctcgagg
     1981 ccaaggggct gctctacatc ggcaccggcg tttcgggcgg tgaagagggg gcgctcaagg
     2041 gaccttcgat tatgccgggc ggctcgcccg cggcctggcc ggcggtcaag ccgatcttcc
     2101 aggcgatcgc cgccaaggtc gaggacggaa ccccctgctg cgactgggtc ggcaacgacg
     2161 gcgccggtca cttcgtgaag atggtccaca acgggatcga gtacggcgac atgcagctca
     2221 tctgcgagtc gtaccagatc atgaaggacc tcctcggcat gtcggccgac gagatgcacg
     2281 aggtgttcgc cgaggggaac aagggggacc tcgacagcta cctgatcgag atcacgcgcg
     2341 acatcttggg tttcaaggac aaggacggct cgccgctggt cgacaagatc ctcgacaccg
     2401 ccggccaaaa aggaacgggc aagtggacca gcgtgaccgc gctcgacctg gggattccgc
     2461 tgacgctcat cagcgaggcg gtgttcgccc gcatcctgtc agcgacgaag gaagagcggg
     2521 tggcggcctc gaagatcctg cgcggcccga cgccgaagtt caccggcgac aagaaggcgt
     2581 tcatcaccga catcggccac gcgctctatg cgtcgaagat cgtctcctac gcgcagggct
     2641 accagatgat gcaggcggcg gcggccgagt ataagtggga cctcagctac ggcgggatcg
     2701 cgctgctctg gcgcggcggc tgcatcatcc gctcgaagtt cctgggcaag atcaaagagg
     2761 cctacgacgc ggatcccaag ctgtcgaacc tgctgctggc gccgttcttc caggagaaga
     2821 tcgaggcgat tcaggagagc tggcggcggg tggtggcgac cgccgcgca
//
LOCUS       DATAJL010000906         1544 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74926,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000906 DATAJL010000000
VERSION     DATAJL010000906.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74926"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..1060)
                     /locus_tag="VHN39_17050"
     CDS             complement(20..1060)
                     /locus_tag="VHN39_17050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2818104.1"
                     /translation="MRQLKPSSVLLLLPLVAVLSLAGCKKPPPKTTEAEQARAVRVIS
                     LDTRPIAGALAASGDLVAREEAAVLPEVSGYRVSRVLVDVGDHVTKGQTLVQLDPALI
                     QGQLLQQEALAAQAAVNAKQAEDQANRVKDLDNQGVISQEAIDQRRFQARAAQATSNA
                     QAAALKDIRTRNAKLAVTAPVSGLILERTVRPGDMSAAGGGTPWFRLARDSEIELAAQ
                     LSDSDLANIRPGQHAEVTLPSGVVVQGVVRLVSPQIDPQTKLGIVRVHLPVSRDIRAG
                     GFGRAVFTDVSGAVLAAPETAIRYDADGASVMVVGSDNRVRHAPVQTGQRGGGYVQLV
                     KGPPRWPVWTGA"
     gene            complement(1068..>1544)
                     /locus_tag="VHN39_17055"
     CDS             complement(1068..>1544)
                     /locus_tag="VHN39_17055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEX2818105.1"
                     /translation="PGFGWAKSSQPGFSATTHSSIIGGMVTQPLLSIPTKIAELKAQN
                     ARTEQAVIAYEKAVQTAFSDSEGTLVRLDADRKRVALLIDGEARAHRGYNASKIGYDR
                     GLTDLQTALSAEQSWRATRTQLTSAQVEAFRRTVQAYKALGGGWPAEGFPTEKQAR"
BASE COUNT          214 a          527 c          556 g          247 t
ORIGIN      
        1 gctccgacaa ccgcgtgcgt cacgccccgg tccagaccgg ccagcgcggc ggccctttga
       61 cgagttgcac gtagccgccg ccgcgctggc cggtctggac cggggcgtga cgcacgcggt
      121 tgtcggagcc cacgaccatg acgctggcgc cgtcggcgtc gtagcggatg gcggtttccg
      181 gggcggccag aacggcgccg gagacgtccg tgaacaccgc gcgaccgaag ccgccggcgc
      241 ggatgtcgcg gctgaccggc aggtgcacgc gcacgatgcc gagcttggtc tgcgggtcga
      301 tctgcgggct caccaggcga acgacgccct gcaccaccac gccgctcggc agggtgacct
      361 cggcgtgctg gccgggccgg atgttggcca gatcgctgtc ggaaagctgg gcggcgagct
      421 cgatctcgct gtcacgcgcc aggcggaacc agggcgtccc gccgcccgcg gctgacatat
      481 cgccgggccg cacggtgcgt tccaggatca gacccgagac cggcgcggtc accgccagct
      541 tggcgttgcg ggtcctgata tccttcagcg ccgcggcctg ggcgttggag gtggcctgcg
      601 ccgcgcgcgc ctgaaaccgg cgctggtcga tggcctcctg cgagatcacg ccttgattat
      661 ccaggtcctt gacccggttc gcctggtcct cagcctgctt ggcgttgacc gccgcctggg
      721 cggccagcgc ctcctgctgc agaagctggc cctggatcag ggccggatcg agctgaacga
      781 gggtctggcc cttggtcacg tggtcgccga cgtcgaccag cacccgcgac acgcgatagc
      841 cgctgacttc gggcagcacc gcggcttcct cgcgcgccac caggtcgcct gaagcggcca
      901 gagctccggc gatcggccgg gtgtcgagcg agatgacgcg aacggcgcgg gcctgttcgg
      961 cctccgtcgt cttcggcggt ggcttcttgc agccggccag cgacagaacc gccaccagcg
     1021 gcaggaggag aaggaccgaa gaaggtttga gctgtctcat gcgggtctca gcgggcctgc
     1081 ttttcagtgg gaaagccctc ggcgggccag ccgccgccga gcgccttgta ggcctggacg
     1141 gtgcggcgga aggcctccac ctgggccgag gtgagttggg tccgggtcgc acgccaggac
     1201 tgctcggcgc tgagcgccgt ctgcaggtcc gtgagacccc ggtcgtagcc gatcttcgag
     1261 gcattgtagc cgcggtgtgc gcgggcctcg ccgtcgatca ggagcgccac acgcttgcgg
     1321 tcggcatcga gccggacgag tgtgccctcg ctatccgaga acgccgtctg cacggccttt
     1381 tcataggcga tcaccgcctg ttcggttcgc gcgttctgag ccttcaattc ggcgatcttg
     1441 gtcgggatcg acagcagggg ctgggtgacc atgccaccga tgatcgagct gtgggtcgtc
     1501 gcagagaacc ccggctgcga gctcttcgcc cagccgaagc ccgg
//
LOCUS       DATAJL010000907         5297 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_74940,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000907 DATAJL010000000
VERSION     DATAJL010000907.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5297
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_74940"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..445
                     /locus_tag="VHN39_17060"
     CDS             <1..445
                     /locus_tag="VHN39_17060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818106.1"
                     /translation="HAGPAYEALKAAVTGPVERVVVPAWEGGHPDHDICAALGAKLAA
                     EHGPIRSLRLSAREWASWLAAVGAFPSQFKAWSGLLPGMAMTFARQGEFRYQGLDPKR
                     IGGPPHQGSLLYERMFRTPYPVIRAAVDALAADGKAPWTTPQTLT"
     gene            442..1293
                     /locus_tag="VHN39_17065"
     CDS             442..1293
                     /locus_tag="VHN39_17065"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2818107.1"
                     /translation="MNGLSFRPAVHEDLDRTVGLMGLGFPAAHKFSRDFLQWQYYDNP
                     AGPPLGCNIDDGERLIGHLMGIPLNVRLRGQPTVVTLIMNVATHPDYRGRGLFLELVR
                     RVAEMSAGRGHAGVVGVANQQTERAYRTRLGFQNVAGLGAHLELLPHKVDMTRALAAA
                     DFAHRWTDETLAWRLRNPANPLRVAGGTDDSLFVEGASTTPLIRARGVIPRDGLSASV
                     RGAVMGPAVVLGLTPKGTARRGWAVAIPERLRPSPLRMIWLNHKVPGDQLDPDRILFS
                     FLDFDAF"
     gene            complement(1290..1661)
                     /locus_tag="VHN39_17070"
     CDS             complement(1290..1661)
                     /locus_tag="VHN39_17070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818108.1"
                     /translation="MILKDALLCAGFSLALPIGQTLFKFAAVNNARLSGPLVVKLITN
                     VPLLGAFAWYGLTALFWFYILTRVPLSTAYAFSIVGSGLVPLVAWLVFKEPLDWRFAV
                     GYLLMLGGFAVIMQGQRALAG"
     gene            complement(1658..2731)
                     /locus_tag="VHN39_17075"
     CDS             complement(1658..2731)
                     /locus_tag="VHN39_17075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2818109.1"
                     /translation="MASIGKTVEVGGKPLEERRRLLRAFDPTLDGAGVWLVVPCYKVK
                     AHILDVIAKTPAWVDGIVCVDDACPEHSGDFIEKSNKDKRVVVVRLAQNQGVGGATMA
                     GYREAIARGGQVMVKVDGDDQMDLGYIAHLVAPILLGEADYAKGNRFTSISHLQTMPT
                     IRVLGNAALSFAAKLSTGYWNIFDPTNGYTAIEGQVARMAIEKRVSRRFFFETDLLYH
                     LGTLRAVVRDVPMPARYGREVSNIRIGAIVGPFALKHVKNFFQRVLGQYFVRDFSAAS
                     LELVFGVIFILFGIGYATHYMTTPHKTAASAGVVMAAALPVILGAQLLMQALNFDVLN
                     VPSRPIHPYLRTIARMEAEETAK"
     gene            2883..3719
                     /locus_tag="VHN39_17080"
     CDS             2883..3719
                     /locus_tag="VHN39_17080"
                     /inference="COORDINATES: protein motif:HMM:NF013245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2818110.1"
                     /translation="MDTATHMLRTGRRGPLFEVQMALRDLRASVERIDLAWSLAWHDV
                     VSRYRGSILGPLWITLSMGLMVLGIGLVYGELFRISINDFIPFVALGIVFFGTVTGII
                     NEGCDTFVQAAGMLSQTSLPMFTFVWRTVLRNLINLGHHLVIVLGVLVYFGFWRIANF
                     PIAALGLVFLVINAAWLSMLVAIISARFRDIPQIVQSITQAAAIMTPVFWLPDRISEK
                     HRAILDFNPFYHLLEAVRAPLLGRGVAPHTYLFLAGMAAVGWIVTFGLFANTRRRIVH
                     YL"
     gene            3716..4465
                     /locus_tag="VHN39_17085"
     CDS             3716..4465
                     /locus_tag="VHN39_17085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2818111.1"
                     /translation="MKAPPVSISCQDLTLRFPVYGVDAKSLKKHLAKITVGGRLGRHH
                     GTTEVTALSGLNLELKAGDRLGLVGHNGSGKTTLLRALSGAYEPDEGTIEVQGHIAAL
                     LDLNLGIDPSATGFDNIRLRGRIAGLSSKEIDQRLPEIAEFSGLGAFLAMPVKTYSAG
                     MQARLAFAAATAVEADVLLMDEWIAVGDADFQKIAHRRLLKLVERAGILVLASHDVEL
                     LRLYCNKVMRLDGGVASAVTPIKNLDELMAA"
     gene            4539..>5297
                     /locus_tag="VHN39_17090"
     CDS             4539..>5297
                     /locus_tag="VHN39_17090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818112.1"
                     /translation="MDVIFTIVSRNYAAQAATLMESLAVAEPKARRVVVATDGPIPAL
                     ERFAEVIDARDVGAPYAAMSVYYDALELNTAVKPYVFRKLLTEPGVTSATYLDPDIFV
                     FRPLSAVRQGLAEAQLALTPHLTRPLLGSAMPNDHAILRSGSYNLGFCAARAEPRVVD
                     LMSWWADRCEFDCRVDLQNGLFTDQRWMDLAPGFVDSLAVLRTPTLNLAYWNLEGRTL
                     AKAKDGWTVDGEPLAFFHYSGFDPARPDVLSKHQD"
BASE COUNT          832 a         1852 c         1759 g          854 t
ORIGIN      
        1 ccatgcgggg ccggcctacg aggccctgaa ggccgccgtg accggcccgg tcgagcgggt
       61 cgtcgtgccg gcctgggagg gcggccaccc cgaccacgac atctgcgcgg ccctgggcgc
      121 caagctggcg gccgagcacg ggccgatccg gagcttgcgt ttgagcgccc gcgaatgggc
      181 gagctggctg gcggcggtcg gggccttccc gtcgcagttc aaggcctggt cggggctgct
      241 ccccggcatg gccatgacct tcgcccggca gggcgagttc cgctaccagg gcctcgatcc
      301 caaacgcatc ggcgggccgc cgcatcaggg gagcctgctc tatgagcgga tgttccggac
      361 gccctatccg gtgatccgcg ccgcggtcga cgccctggcc gcggacggca aggcgccgtg
      421 gacgacgccc cagaccctca catgaacggg ctctcgttcc gccccgccgt ccatgaggac
      481 ctcgaccgta cggtcgggct gatgggcctg gggtttccgg cggcgcacaa gttcagccgc
      541 gatttcctgc aatggcagta ctacgacaac ccggccggcc cgccgctggg ctgcaacatc
      601 gacgatggcg agcggctcat tggccacctg atgggcatcc cgctgaacgt gcgcctgcgg
      661 ggccagccca ccgtcgtcac cctgatcatg aacgtcgcca cccatccgga ctatcgcggg
      721 cggggcctgt tcctggagct ggtgcggcgg gtggcggaga tgtcggccgg gcgcggccat
      781 gccggggtcg ttggtgtcgc caaccagcag accgagcggg cctatcgcac caggctcggc
      841 ttccagaacg tcgccggcct gggcgcccac ctggagctcc tgccgcacaa ggtcgacatg
      901 acgcgcgccc tcgccgccgc cgacttcgcc caccgctgga cggacgagac cctggcctgg
      961 cgcctgagga acccggccaa ccccctgcgc gtcgccggcg ggaccgacga cagcctgttc
     1021 gtcgagggcg cttcgacgac gccgctgatc cgggcgcggg gcgtcatccc gcgcgacggc
     1081 ctgagcgcgt cggtgcgcgg cgcggtgatg ggtcctgcgg tggtgctcgg cctgaccccg
     1141 aaggggacgg cgcggcgcgg ctgggccgtg gccatacccg agcgcctgcg gccttcgccc
     1201 ctgcggatga tctggctcaa tcacaaggtc ccgggcgacc aactggaccc cgaccggatc
     1261 ctcttcagct tcctggactt tgacgccttt tagccggcga gcgcgcgctg gccctgcatg
     1321 atcaccgcaa agccgcccag catcagcagg tagccgaccg cgaagcgcca atcgagcggc
     1381 tccttgaaca ccagccacgc caccagcggc accaggcccg agcccacgat ggagaaggcg
     1441 taggcggtgg agagcggcac ccgggtcagg atgtagaacc agaagagcgc cgtcaggcca
     1501 taccaggcga aggccccgag cagcggcaca ttggtgatca gcttgaccac cagcggcccc
     1561 gacagccgcg cgttgttcac cgcggcgaac ttgaagagcg tctggccgat cggcagggcc
     1621 agggaaaagc cggcgcagag cagggcgtcc ttgaggatca cttggcggtc tcctcggctt
     1681 ccatcctggc gatggtgcgc aggtaggggt ggatcgggcg actcggcacg ttcaggacgt
     1741 cgaagttcag cgcctgcatc aaaagctgcg cgcccaggat caccggcaag gcggcggcca
     1801 tgaccacgcc ggctgaggcg gcggtcttgt gcggggtggt catgtagtgg gtcgcgtagc
     1861 cgatcccgaa cagaatgaag atcacgccga acaccagctc caggctggcg gccgaaaagt
     1921 cgcggacgaa gtactggccc agcacccgct gaaagaagtt cttcacatgc ttcagcgcga
     1981 agggcccgac gatggcgcca atccggatgt tggagacctc gcggccatag cgcgccggca
     2041 tcggcacgtc gcggaccacc gcgcgcaggg tgccgaggtg atagagcagg tcggtctcga
     2101 agaagaaccg gcgcgagacc cgcttttcga tggccatccg cgctacctgg ccctcgatgg
     2161 cggtgtagcc gttggtgggg tcgaagatgt tccagtagcc ggtggagagc ttcgccgcga
     2221 agctgagcgc ggcgtttccc agcacccgga tcgtcggcat ggtctgcagg tggctgatcg
     2281 aggtgaagcg gttgcccttg gcgtagtccg cctcgcccag gaggatcggg gccaccaggt
     2341 gggcgatgta gcccaggtcc atctggtcgt cgccgtcgac cttgaccatc acctggccac
     2401 ccctcgcgat cgcctcgcgg tagccggcca tggtggcgcc gcctaccccc tgattctgag
     2461 ccaggcggac gaccacgacc cgcttgtcct tgttggattt ctcgatgaag tcaccggaat
     2521 gctccgggca ggcgtcgtcg acgcagacga tgccgtccac ccaggccggg gtcttggcga
     2581 tcacatcgag gatgtgagcc ttgaccttgt agcagggaac caccagccac acgcccgccc
     2641 cgtcaagggt gggatcgaag gcgcgcaaca accggcgccg ctcctccagg ggctttcccc
     2701 cgacctcaac ggtcttaccg atggacgcca tgcgcccggc tagcacggaa ggccgcacac
     2761 tggcaaagct gggccctact cctacaagat gccgcgcgat ccgcggcggg ggcgctatcc
     2821 ttgcgcctca atagcctgcc tgttacgagc gcccgtcgtc gggagacccc ctagcgggaa
     2881 gtatggacac tgccacccac atgctgcgaa ccggacggcg cggaccgctg ttcgaggtcc
     2941 agatggcgct ccgggacctg cgcgcgtcgg tggaacggat cgacctggcg tggtcgctgg
     3001 cgtggcacga cgtggtctcg cgctaccgcg gctccatcct gggcccctta tggatcacgc
     3061 tttccatggg cctgatggtg ctggggatcg gcctggtcta tggcgagctg ttccgcatct
     3121 cgatcaacga cttcattccg ttcgtggcgc tcggcatcgt gttcttcggg accgtcaccg
     3181 gcatcatcaa cgagggctgc gacacctttg tccaggccgc cggcatgctc tcgcagacca
     3241 gcctgccgat gttcaccttc gtctggcgca cggtgttacg gaacctgatc aacctcggcc
     3301 accacctggt catcgtcctg ggggtgctgg tctatttcgg cttctggcgc atcgcgaact
     3361 ttccgatagc ggcgcttggc ctggtgttcc tggtgatcaa tgcggcgtgg ctttcgatgc
     3421 tggtggcgat catctcagcg cgcttccgcg acatcccgca gatcgtgcag tccatcaccc
     3481 aggccgccgc gatcatgacg ccggtcttct ggctgccgga ccggatcagc gagaagcacc
     3541 gcgcgatcct cgacttcaat ccgttctatc acctgctgga ggcggtgcgg gctcccctgc
     3601 tgggccgggg cgtggcgccg cacacctacc tgttcctggc cgggatggcg gcggtgggct
     3661 ggatcgtcac ctttggcctc ttcgccaaca cccgccggcg gatcgtgcac tacctatgaa
     3721 agcacccccg gtctcgatct cctgccagga cctgacgctc cgcttcccgg tctatggggt
     3781 ggacgccaag tcgctgaaga agcatctggc caagatcacc gtcggcggcc ggctggggcg
     3841 ccatcacggg accaccgagg tcaccgcgct ctcaggcctg aacctggagc tgaaggccgg
     3901 cgaccggctg gggctggtgg gccacaacgg ctcgggcaag accacgctgc tgcgcgcgct
     3961 ctccggcgcc tacgagcccg acgaggggac catcgaggtg cagggtcaca tcgcggctct
     4021 gctggacctc aacctcggca tcgacccctc ggcgaccggt ttcgacaaca tccgcctgcg
     4081 cggccggatc gcgggcctgt cgtcgaagga gatcgaccag cgcctgccgg agatcgcgga
     4141 attctccggc ctgggggctt tcctcgccat gccggtgaag acctactcgg ccggcatgca
     4201 ggccaggctc gccttcgccg ccgccaccgc cgtcgaggcc gacgtgctgc tgatggacga
     4261 atggatcgcg gtgggcgacg ccgacttcca gaagatcgcc cacaggcgcc tgctgaagct
     4321 ggtggagcgg gccggcatcc tggtcctggc ctcccacgac gtggagctgc tcaggctcta
     4381 ctgcaacaag gtcatgcggc tggacggcgg cgtcgcctcg gcggtcaccc ccatcaagaa
     4441 cctcgacgag ctgatggccg cctgaggccg ctcacgttgc ggctcgaagc caacccctga
     4501 tagaccggac ccagctagcg gggccggcag gtatcgcctt ggacgtcatc ttcaccatcg
     4561 tctcccgcaa ctacgcggcc caggccgcca cgctgatgga gagcctagcc gtcgccgaac
     4621 ccaaggcgag gcgcgtggtg gtcgccaccg acggcccgat ccccgccctg gagcgcttcg
     4681 ccgaggtgat cgacgcgcgc gacgtgggcg cgccctacgc ggccatgagc gtctattacg
     4741 acgcactgga gctcaacacg gcggtgaagc cctatgtgtt ccgcaagctc ctgaccgagc
     4801 ccggtgtgac ctcggccacc tatctcgacc ccgacatctt cgtctttcgc ccgctcagcg
     4861 ccgtgcgcca gggcctggcc gaggcgcaac tggcgctgac cccgcacctg accagacccc
     4921 tgctgggctc ggccatgccc aacgaccacg cgatcctgcg ctcgggctcc tataacctgg
     4981 gcttctgcgc cgcccgcgcc gagcccaggg tcgtggacct gatgagctgg tgggccgacc
     5041 gctgcgagtt cgattgccgc gtcgatctgc aaaacggcct cttcaccgac cagcgctgga
     5101 tggacctggc gcctggcttc gttgacagcc tggcggtcct cagaacgccg accctcaacc
     5161 tcgcctactg gaacctcgag ggccgcacgc tcgccaaggc caaggacggc tggaccgtcg
     5221 acggcgagcc gctggctttc ttccactatt ccggcttcga cccggcccgg ccggacgtgc
     5281 tctcgaagca ccaggac
//
LOCUS       DATAJL010000908         3047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101643,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000908 DATAJL010000000
VERSION     DATAJL010000908.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101643"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1700
                     /locus_tag="VHN39_17095"
     CDS             <1..1700
                     /locus_tag="VHN39_17095"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818113.1"
                     /translation="VIALNDGRDLRQMLPVWLGLGLCAVFCGGRALKTPSAQESERRV
                     NASLRDFQIIAENVTDVITRTNLDGIREYVSPGCFAMLGFRPDELVGTRQSDFHHPDD
                     KAAIDASLARLKADPTRHDSMTVRVRHKDGRWLWLQASGRVAIEDGVPVGLIGVSRDV
                     TEQVAAQAALVAATAEAESANRAKAEFLANVSHEIRTPMNGILSALHLLEREQISEEG
                     RELMRHATGSGRMLSQLLNDVLDFSKIEAGQLDLAPEPMNVGETLEAVIALLSGQARA
                     KGVDLRFETVGEDMWIEADPVRVRQAMFNLVGNAVKFTAHGHITARLAVDALGAKAAR
                     ADLRRVRLEVEDTGIGISLEAQAHLFERFRQADGETSRRFGGTGLGLSITEALARMMG
                     GEISVHSVEGEGSTFRMAFEAPAAQPVSVAPVEEGLLDGVSILLVEDNVTNRLVARTM
                     LTRLGANVEEAEDGVVGLEAARRGGHDLILMDIQMPHMDGLEATRAIRGLSTPAAQVP
                     IIGLTANVMVHQRAEYMAAGMNGVVGKPISPALLLSEIARVISEGDEAEPRAGTETG"
     gene            complement(1704..2912)
                     /locus_tag="VHN39_17100"
     CDS             complement(1704..2912)
                     /locus_tag="VHN39_17100"
                     /inference="COORDINATES: protein motif:HMM:NF021523.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 family protein"
                     /protein_id="HEX2818114.1"
                     /translation="MAKPDYPNPNERAAILKDAQRQKMTRSAHAYVRGSTLKFYEWLE
                     ESAGKIPQGPSVWICGDCHTGNLGPVASARGQVAVQIRDLDQTVIGNPAHDLIRLGLS
                     LATAARGSNLPGVTTALMVEHMVEGYEAGLQGETLAPDEETTPSEVRRVLKQALRRRW
                     KHLARERIEDERPTIPLGKRFWPLSETEHKALEALAGDEGLRKLVTALQHRPNDAPIE
                     VLDGAYWMKGCSSLGRLRYALLVGVKDEDGKKETLLIDIKEAVPAAAPSTPGAKMPAD
                     NARRVVAGARALSPFLGRRMLAGKLMRRSVVIRELTPQDLKLDIERLSRDEAVRAAHY
                     LALVVGRGHARQMDAATRASWLTELARNRSATLDAPSWLWSAIVELIQTHEASYLNHC
                     RRYALQGHAA"
BASE COUNT          445 a         1041 c         1090 g          471 t
ORIGIN      
        1 gcgtcatcgc actcaacgac gggcgtgact tgcgccagat gctgccggtc tggctggggc
       61 tgggcctttg cgccgtcttc tgcggcggcc gtgcgctcaa gacgccctcc gcccaggaat
      121 cggagcgccg cgtcaacgcc agcctgcgcg acttccagat catcgccgag aacgtcaccg
      181 acgtgatcac ccggaccaat ctcgacggca tccgagaata tgtgtcgccg ggctgtttcg
      241 cgatgctggg ctttcgtccg gacgagctgg tcgggacccg gcagtcggac ttccaccatc
      301 ccgacgacaa ggcggcgatc gacgcctcgc tagcccggtt gaaggccgat cccacccggc
      361 acgactcgat gaccgtgcgg gtgcgccaca aggacggccg gtggctgtgg ctgcaggcga
      421 gcggccgggt ggccatcgaa gatggcgttc ccgtcggcct gatcggcgtc agccgtgacg
      481 tcaccgaaca ggtggccgcc caagccgcgc tggtggccgc cacggccgag gccgaatccg
      541 ccaatcgggc caaggccgag ttcctggcca acgtcagcca cgagatccgc accccgatga
      601 acggcatcct tagcgcgctg caccttctgg agcgcgagca gatctcagag gaggggcgcg
      661 agctgatgcg ccacgccacg ggcagcgggc ggatgctgtc gcaactgctc aacgacgttc
      721 tcgatttctc caagatcgag gccggccagc tcgacctggc gcccgagccg atgaacgtcg
      781 gcgagaccct ggaggcggtg atcgcgctcc tttctggaca ggcccgcgcc aagggggtcg
      841 acctgcggtt cgagacagtc ggcgaggata tgtggatcga ggccgacccg gtgcgcgtgc
      901 gccaggccat gttcaacctc gtgggcaatg cggtgaagtt cacggcccac ggtcacatca
      961 ccgcgcgcct ggccgtggat gcgctcggcg ccaaggcggc gcgcgcggat ctgcggcggg
     1021 tgcgcctgga ggtcgaggac accggcatcg gcatcagcct tgaggcgcag gcgcacctct
     1081 tcgaacgctt ccgccaggcc gacggcgaaa cctcgcgccg cttcgggggg accggcctgg
     1141 ggctttccat caccgaggcg ttggcccgca tgatgggcgg cgaaatctcc gtccacagcg
     1201 tcgagggcga gggctcgaca ttccgcatgg ccttcgaggc gccggcggcc cagccggtta
     1261 gcgtcgcgcc cgtcgaggag ggtctcctgg acggcgtgag catcctcctg gttgaggaca
     1321 acgtcaccaa tcggctggtg gcgcgcacca tgctcacccg cctgggggcg aacgtcgagg
     1381 aagccgagga cggggtggtc ggcctcgagg cggcccgccg cggcggccac gacctgatcc
     1441 ttatggacat ccagatgccg cacatggacg gcttggaagc cacccgcgcc atccgtggcc
     1501 tgtccacccc cgccgcccag gtcccgatca ttgggctcac ggccaacgtc atggtgcatc
     1561 agcgggcgga gtacatggcg gccgggatga acggggtggt cggcaagccg atctcgccgg
     1621 cgctgctgct gtcggagatc gctcgggtga tctccgaggg cgatgaagcc gagccgcggg
     1681 ccggaaccga aaccgggtag cgcctaggcc gcgtggccct gcagggcgta gcggcggcag
     1741 tggttgaggt aggacgcctc gtgggtctgg atcagctcga cgatcgccga ccatagccag
     1801 gagggcgcgt ccagcgtcgc cgagcggttg cgcgcgagtt cggtcagcca gcttgcccgg
     1861 gtcgcggcgt ccatctggcg ggcgtggccg cggccgacca ccagcgccag atagtgcgcg
     1921 gcccgcaccg cctcgtcgcg ggaaaggcgc tcgatgtcga gcttcagatc ctgcggggtc
     1981 agctctcgga tcaccaccga acggcgcatc agcttgccgg ccagcatgcg gcggccgagg
     2041 aagggcgaga gcgcccgggc gccggccacc acgcgcctgg cgttgtcggc aggcatcttc
     2101 gcgcccggcg tgctgggcgc cgccgccggc acggcctcct tgatgtcgat cagcagggtc
     2161 tctttcttgc cgtcctcgtc cttcaccccg accagcaggg cgtagcgcag gcgccccagc
     2221 gaggagcagc ccttcatcca gtaggcgccg tcgaggactt cgatgggcgc gtcgttgggc
     2281 cgatgctgca aggcggtgac cagcttgcgc aggccctcgt cgccggccag ggcctccagc
     2341 gccttgtgct cggtctccga cagcggccag aagcgcttgc cgagcgggat ggtcggccgc
     2401 tcgtcctcga tccgctcgcg ggccaggtgc ttccagcggc ggcgcagcgc ctgcttcagc
     2461 acgcggcgga cctcgctggg cgtggtctcc tcgtccggcg ccagggtctc gccctgcagg
     2521 cccgcctcgt agccctcgac catgtgctcg accatcaggg cggtggtgac gccgggcagg
     2581 ttcgagcccc gcgcggcggt ggccagcgac aggcccagcc ggatcaggtc gtgggccgga
     2641 ttgccgatca cggtctggtc gaggtcgcgg atctgcaccg ccacctggcc gcgggcgctg
     2701 gccacggggc cgagattgcc ggtatggcaa tcgccgcaga tccacaccga gggtccctgc
     2761 ggaatcttgc cggcgctttc ctccagccat tcgtagaact tcagcgtcga gccgcggaca
     2821 taggcgtgcg ccgagcgggt catcttctgc cgctgggcgt ccttgaggat cgcggcgcgc
     2881 tcgttggggt tcggatagtc aggcttggcc atggctcctg ggtgaagccg gccgcgcgca
     2941 gatggttccg ggcgttacgc cgcgtagctc agcgggtggg gctcggcgcc gagaccggac
     3001 tcgaagtcct gcagcagttc caggatctcg cccatgggcg ccatcag
//
LOCUS       DATAJL010000909         2556 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88604,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000909 DATAJL010000000
VERSION     DATAJL010000909.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2556)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2556)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2556
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88604"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VHN39_17105"
     CDS             <1..328
                     /locus_tag="VHN39_17105"
                     /EC_number="1.14.19.-"
                     /inference="COORDINATES: protein motif:HMM:NF012699.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="fatty acid desaturase"
                     /protein_id="HEX2818115.1"
                     /translation="FYVQHQFEGAVWARNGDWKRDQAALAGSSHYDLPQPLRWFTGNI
                     GIHHIHHLSSRIPFYRLPKVLKEHPELNAMSRVGFWESFRCARLSLWDEAAGRLVSFR
                     EARQAA"
     gene            484..963
                     /locus_tag="VHN39_17110"
     CDS             484..963
                     /locus_tag="VHN39_17110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0262 family protein"
                     /protein_id="HEX2818116.1"
                     /translation="MADDDRQMHRLQTVELDEESLAAASRDQEQERQIAIFDLLEENH
                     FHPEGAEHGPYDLRMGLVENRLVLDVKGPAYERRHILSLSPFRSLIKDYFMICESYYQ
                     AIRSSTPAQIEALDMGRRGLHNEASELLRTRLAGKIDTDMDTARRLFTLICALHWRG"
     gene            970..1455
                     /locus_tag="VHN39_17115"
     CDS             970..1455
                     /locus_tag="VHN39_17115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HEX2818117.1"
                     /translation="MPADAPPLLPGAVLFACNFNQVRSPMAEGLLKQLVGDRVYVDSC
                     GLKRPAMVHDDVSDEDVAAGVDPFAVAVLAELGWDLARHRPKTFADLEDSSFDLVISL
                     TPEAQHRSVELARGRAADIEYWPTFDPTLTDGSREARLAAYREVRDGLVRRIAERFGG
                     S"
     gene            1571..1789
                     /gene="infA"
                     /locus_tag="VHN39_17120"
     CDS             1571..1789
                     /gene="infA"
                     /locus_tag="VHN39_17120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEX2818118.1"
                     /translation="MAKEELLEFPGTVSEVLPNATFRVKLENDHEIIAHTAGKMRKNR
                     IRVSAGDKVLVEMTPYDLSKGRITFRVR"
     gene            1805..2392
                     /locus_tag="VHN39_17125"
     CDS             1805..2392
                     /locus_tag="VHN39_17125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030428 - cell septum [Evidence IEA];
                     GO_process: GO:0000917 - division septum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Maf family nucleotide pyrophosphatase"
                     /protein_id="HEX2818119.1"
                     /translation="MPQSPPRLVLASASPRRLDLLRQIGLEPDAVEAAEVDETPLKDE
                     TPRLLATRLAVAKADRVAPQHAGSHVLAADTVVALGRRVLPKASDAEEVRACLNLLSG
                     RAHRVLTGLCAIAPDGRRAHRLVESRLHFKRLTPGDIDSYLTSGEGLGKAGGYAIQGR
                     AGRFVISLQGSYSGVVGLPLYEAANLLAGLGYPIP"
BASE COUNT          412 a          851 c          862 g          431 t
ORIGIN      
        1 gttctatgtg cagcatcagt tcgagggcgc ggtgtgggcg cggaacggcg actggaaacg
       61 tgaccaggcc gcgctcgccg gaagttcgca ctatgatttg ccgcagccgc tgcggtggtt
      121 caccggcaac atcggcatcc atcatatcca tcacctttct agccgtattc cattctaccg
      181 gctgccgaag gtgctgaagg aacatcccga gctgaacgcc atgagccgcg tcggcttctg
      241 ggagagcttc cgctgcgccc ggctgtcact gtgggacgag gccgcgggcc ggctcgtatc
      301 gttccgcgag gcgcgccaag cggcctgaac ggccctcaat ctgcgaaccc tgagacgccc
      361 ggcgcacccc gcgccgggcg tatttcttta tgcgctgaag cctgcgttcg caggtgcggg
      421 atgacgcggg ggggcggaat gccataaagc gtgagcgacg cccggacgcc cagctcggaa
      481 gccatggccg acgacgaccg ccagatgcac cgtctacaga ccgtcgagct tgacgaagag
      541 tcgctcgcgg cggcctcgcg cgaccaggag caggagcggc agatcgctat cttcgacctg
      601 ctggaggaga accatttcca tccggagggc gccgagcacg gaccctacga tctgcgcatg
      661 ggcctggtgg agaaccggct tgtgctcgac gtgaaggggc cagcctatga gcggcgccac
      721 atcctgtcgc tgtcgccgtt ccgcagtctg atcaaggact acttcatgat ctgcgagagc
      781 tactatcagg cgatccgaag ctcgacgccg gcccagatcg aggcgctgga tatgggccgc
      841 cgcggcctgc acaacgaagc ctccgagctc ctgcggaccc ggttggccgg caagatcgac
      901 accgacatgg acaccgcgcg gcggcttttc acgctgatct gcgcgctgca ttggcggggc
      961 tagccccaca tgccggctga cgcgccgccg cttctgccgg gcgccgtgct gttcgcctgc
     1021 aacttcaatc aggtccgctc acccatggcc gaaggtctct tgaaacagtt ggtcggcgac
     1081 cgggtctatg tggacagctg cggcctgaag cgtccggcca tggtgcatga cgatgtgtcg
     1141 gacgaggacg tcgcggccgg ggtcgatccc ttcgccgtgg cggtcctggc cgaactgggc
     1201 tgggatctcg cgcggcatcg gcccaagacc ttcgccgatc tggaggactc atccttcgat
     1261 ctggtgatct cgctgacgcc ggaagcgcag caccgctccg tcgagctggc ccgcggccgt
     1321 gcggccgata tcgagtactg gccgactttc gatccgacgc tcacggacgg ctcgcgcgaa
     1381 gcgcggctgg cggcctaccg agaggtgcgc gatggtctcg tgcggcggat cgccgagcgc
     1441 ttcggcgggt cttaagccgt cgcccatcga cctcgccccg cccggtgcgc tataattctt
     1501 cgcgctatcc acggctcgca gcctgacgta agggcgcgag ccgtcatttt attctcgatt
     1561 tggagcctgc atggcgaaag aagaattact tgagttcccg ggcacggtca gcgaggtcct
     1621 gcccaacgcg acgttccgcg tgaagcttga gaacgaccac gagatcatcg cccacaccgc
     1681 cggcaagatg cgcaagaacc gcatccgggt ctcggccggc gacaaagtgc tcgtcgagat
     1741 gacgccctac gacctttcca agggccgcat caccttccgc gtccgctaga cgcgcccggc
     1801 cgccgtgccg caatcgcccc cccgcctggt gctggcctct gcaagtccca ggcggctcga
     1861 ccttctgcgc cagatcgggc tcgagcctga cgccgtggaa gccgctgagg tcgacgaaac
     1921 cccgctgaag gatgagacgc cgcgcctgct ggcgacacgg ctggccgtgg cgaaggccga
     1981 tcgggtcgcg ccgcagcatg cggggagcca cgtcctggcg gcagacaccg ttgtggccct
     2041 gggccgacgc gtgctgccca aggcgagcga cgccgaggag gtgcgggctt gcctcaacct
     2101 gctttccgga cgggcgcacc gcgtgctgac ggggctttgc gcgatcgcgc cggatgggcg
     2161 gcgcgctcac cggcttgtgg agagccgctt gcatttcaaa cgtctgacgc ctggcgatat
     2221 cgacagctac ctgaccagcg gcgaagggct cggcaaggcc ggcggctatg ccatccaggg
     2281 ccgggccggc cggtttgtga tcagcctgca gggctcctat tctggcgttg tcggcctgcc
     2341 gctctatgag gcggcgaacc tgctcgcagg tctgggctat cccatcccat gagcgaacgg
     2401 cggatctacc tggatcgtgg agttggcgag acccgaggcg tcgtcacgct cgacggccga
     2461 ccggagcggc tgctggtgcg gcgggacgac gacgagccgc gcctgctgct gggcgcgcgg
     2521 ctgatcgcgc gcgtcgccag cctggagcca gcgcta
//
LOCUS       DATAJL010000910         6928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101655,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000910 DATAJL010000000
VERSION     DATAJL010000910.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6928
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101655"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            242..2473
                     /locus_tag="VHN39_17130"
     CDS             242..2473
                     /locus_tag="VHN39_17130"
                     /inference="COORDINATES: protein motif:HMM:NF026255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015267 - channel activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel family protein"
                     /protein_id="HEX2818120.1"
                     /translation="MLLAAALAAASHARAQSQTPASQPDKAAPDAPAKAAPAKSAPKG
                     PAAKTVEGVTVTGASQNGFRSSIDRRSYGVANDLASTTGSISDALKNIPSVEVDVQGN
                     VSLRGDTNVAILIDGKPSTLFKGPGAAQALQALPADQIERVEVITNPSAQFSPEGSAG
                     IINLITKQNRKPGRSGSLRANLGTAGRRNIGVGGAYNSNKLTLSGDLAWRHDPQHSVS
                     TDDRATTDPVTGQPFTSHSEGSSRGPLEILTARAGTDYDIDAATRVSGEVRYNNFTFG
                     GERLFDFAGSGPTGALVQSVHQAGGFENDRVNTSGQLSLRHKFSGDDHTLSVSLNHER
                     VDENNDLNFIQAEALPAVPDFSQDVVSENHLNQTQLKADYSRPMPSEGRLKAGYDLRI
                     DDNDYDTLGTLGPSAATRANDPRETNLFLYKQTVDAAYVTYEQPFGGWTVLGGLRLED
                     VRLDLNQVTTHITGRQDYFRAYPSLHLAYKVSDTNQLVLSYSERVQRPNPTDLNPFRS
                     AGNFYAQQGNPNLRPQDTQSFEAGWQIKDNGTFYLATLYYRQNSNGVTDVITNLGSGV
                     LLTTKANLAQSRNAGLELVANGHLTKTLSYNASTNVYWNEIDASQVPLGPGLGFGSTR
                     SAFTAGGRASLNWQVTPNDLFQVSGQLNAKRLLPQGYSDPMFLMFLGYRHKFSDSFSA
                     VVTVQDPLNRYRFKQVIDTPTLREVSEGRGRIQAAFVGLTWAFGAATKRPQGFDFGGG
                     SAP"
     gene            2541..3986
                     /locus_tag="VHN39_17135"
     CDS             2541..3986
                     /locus_tag="VHN39_17135"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2818121.1"
                     /translation="MADTDIRPGRLFFGSCTAVTALAFTFAAMSAVMYQLKLEFRLDN
                     AQVGLIGGAGLWGMAISQISFSSLCDLVGMRNLLRLALLGHVAGVALFVFATGFSSLF
                     AAALVIAVANGMIEAVCNPLTATLYPDRKAGMLNRMHMWFPGGIVLGGLGCWGLDQIH
                     ADWRAKMVMVLIPALAYGVIFLREKFPPTEAAAAGHKLGDAFKAVATSPLLWMFLGLM
                     AITMSLELGPNRWIPAVLQAGGLPGILVLVMINGVMAVTRANAHAILARVSPPVVLMV
                     STLTAGLGLLSLSYSTTTVQTVISALIFAIGIAIVWPTMMGFVAERTPKTGALGLGLM
                     AAAGSLAVGIITTPLLGEIADRHLPDALAKTSVVSVAGEVLALQSPKSPQLIAAAQAV
                     TAAPAELPPAPTGDFLRRAAAGEAGPAIAAKAQPLLDAGENHSGLLSFRYLAPFAFGV
                     CLIFGLVVLSDRKAGGYAARVAKARLVGAAE"
     gene            3983..5218
                     /locus_tag="VHN39_17140"
     CDS             3983..5218
                     /locus_tag="VHN39_17140"
                     /inference="COORDINATES: protein motif:HMM:NF014893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX2818122.1"
                     /translation="MTTTPPLRIGFVGSGFIARFHAKSFQSVRHAQITGVYSPTAANR
                     DALVEAVNDAELGPCRAHADLHSLLAAPDVDAIWLLAPNDRRLEVMRAIHAAVKSGRS
                     KVRAIACEKPLGRTLAEAREVLRLAEDAGLAHGYLENQVFSTAVERGKEIIWRRAVPA
                     SGRPYLARAAEEHSGPHEPWFWQGARQGGGVMSDMMCHSVEVGRFLLTAPDAARSTLT
                     VKAVNGSVGYLKWTQDKYARSLAKDFKGVEMQAHPVEDFARATITLEDEAGQELIVEA
                     STSWSYVGPGLRIDLALLGPEYAMEFSSLNPSLKVFLSRAITGGQGEDLVEKQNAEQG
                     QMPIVEDEAGTYGYIGENRHMVDCFRHGRTPIETFEDGVEVTKMVMALYKSAETGQTV
                     RLPDETLETYVPLPARTGG"
     gene            5222..6922
                     /locus_tag="VHN39_17145"
     CDS             5222..6922
                     /locus_tag="VHN39_17145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEX2818123.1"
                     /translation="MSTETYDAIIVGSGAGGGMSAYHLTRSGLKVLMLEAGRDYDPRV
                     ETPMFNTNAEAPLRGVSTPDKPFGFYDATVDGGWEVPNEPYTVAEGSEPFIWWRPRML
                     GGRTNHWGRIALRFGPLDFKPHSRDGLGYDWPIAYEDVAPWYDKTEKLIGVSGAAPAR
                     NLLNTPDSPPGCLMESAPPRAFEIFYERAFTAMGIPVIPMHGAVVTGQMEGRNTCLFA
                     TPCGRGCAIGANFQSTTVLLPPAMATGNLTITTNALVYQVDLDKAGKAKGVTYVDRKT
                     GEHRSVTAKSVVLAAGSGETARILLNSKSSLFPNGLCNTHGMVGRYLMDSVGTGVTGR
                     FPSMEGLPPTNDDGQGTQHTYIPWWGYEKQKELGFARGYHIEIGGGRHMPSMGMGSLL
                     HDDDVSVGDDLRAKLRNRFGSTIGFDGRGEMIPNDDCYCEIDPVAKDKWGIPVLRFHW
                     KWGEHETNQAAHAVKTFLAVIDKLGGTPEGHVETDGKKAISKGGEMIHEIGTARMGHN
                     DTDSVVNQYGQSWAVQNLFIMDGATMVSSPDKNPTLSILALAWRSADNMATIAKQGAL
                     "
BASE COUNT         1184 a         2498 c         2207 g         1039 t
ORIGIN      
        1 gcattgaagg ccgcgctcct ggctgccctc aacgatcccg accaggagga cggccaccgc
       61 gccaacctgc agcgcgcccg ggccagcgtc gctcgctgac ggccgcaatc tcgcaaggcg
      121 caacaagcgc cgctgccgca caggcgccac gaatttccgt tcggatatac gcaggcgacc
      181 cggttccctt agagagccag gcgcgaggcc tgagggggat ctgttgcgaa aacgagtaag
      241 cgtgctgctg gctgccgcct tggccgccgc ctcccacgcc cgtgcgcagt cgcaaacccc
      301 ggcgtcgcag cctgacaagg cggcgccgga cgcgcccgcg aaagccgcgc cggccaagtc
      361 cgcgccgaag gggcctgcgg ccaagaccgt cgagggcgtc accgtcaccg gcgcctcaca
      421 aaatggcttc cgcagctcaa tcgaccggcg cagctatggc gtggccaatg acctggcctc
      481 gaccaccggc tcgatcagcg acgccttgaa gaacatcccc tccgtagaag tggatgtgca
      541 gggcaatgtc tcgctcaggg gcgacaccaa cgttgctatc ctgatcgacg gcaagccctc
      601 gaccctgttc aagggcccag gtgcggccca ggcgctgcag gccctgccgg ccgaccagat
      661 cgagcgggtc gaggtgatca ccaatccctc ggcccagttc tcgccggagg gttcggcggg
      721 catcatcaac ctgatcacca aacagaaccg caaacccgga cggtccggct cgctgcgcgc
      781 caatctcggc acggcgggtc gccgcaacat cggcgtcggc ggcgcctaca actccaacaa
      841 gctgacgctc tcgggcgacc tggcctggcg gcacgacccg cagcactcgg tcagcaccga
      901 cgatcgcgcg accaccgatc cggtgaccgg ccaaccgttc accagccaca gcgagggcag
      961 ctcgcgcggc cccctggaga tactgaccgc ccgcgccggg accgactacg acatcgatgc
     1021 cgccacccgc gtcagcggcg aggtccgcta caacaacttc accttcgggg gcgagcggct
     1081 gttcgatttc gccggcagcg gcccgaccgg cgcgctggtg cagagcgtcc accaggccgg
     1141 cggcttcgag aacgaccgcg tcaacacctc ggggcagctc agcctccgcc acaagttctc
     1201 cggcgacgac cacacgcttt cggtcagcct caaccatgag cgggtcgacg agaacaacga
     1261 tctgaacttc atccaggccg aagcgctgcc ggcggttccg gacttctcgc aggacgtcgt
     1321 cagcgaaaac cacctgaacc agacccagct caaggccgac tacagccggc ccatgccgtc
     1381 cgaagggcgg ctgaaggccg gctacgacct caggatcgac gacaacgatt atgacaccct
     1441 ggggaccttg ggcccgagcg cggcgactcg cgccaacgac ccccgggaga ccaacctctt
     1501 tctctacaag cagacggtgg acgcggccta cgtcacctat gagcagccgt tcggcggctg
     1561 gaccgtgctg ggcggcctgc ggctggaaga cgtgcggctc gacctcaacc aggtcaccac
     1621 ccacatcacc ggccgccagg actacttccg cgcctatccc tcgctgcacc tggcctacaa
     1681 ggtttccgac accaatcagc tggtgctgag ctattcggag cgggtccagc ggcccaaccc
     1741 gaccgatctc aaccccttcc gcagcgccgg caatttctac gcccagcagg gcaatccgaa
     1801 cctgcggccg caggacaccc agtccttcga ggccggctgg cagatcaagg acaacgggac
     1861 cttctaccta gccaccctct attaccggca gaactccaat ggcgtgaccg atgtgatcac
     1921 caacctgggc tctggcgtgc tgctgaccac caaggccaac ctcgcccaga gccgcaacgc
     1981 cggcctggag ctggtcgcca acgggcatct gaccaagacg ctgagctaca acgcctccac
     2041 caacgtctac tggaacgaga tcgacgcctc gcaggtgccc ctggggcccg gcctcggctt
     2101 cgggtccacg cgctcggcct tcacagccgg cgggcgcgcc agcctgaact ggcaggtcac
     2161 gcccaacgac ctcttccagg tcagcggcca gctgaacgcc aagcgcctgc tgccgcaggg
     2221 ctattccgac ccgatgttcc tgatgttcct gggctaccgg cacaagttca gcgacagctt
     2281 ttcggcggtg gtcaccgtgc aggacccgct caaccgctat cgcttcaaac aggtgatcga
     2341 cacgccgaca ttgcgcgagg tcagcgaggg ccgaggccgc atccaggcgg cgttcgtcgg
     2401 gctgacctgg gccttcggcg cggccaccaa gcgcccgcaa ggcttcgact tcggcggcgg
     2461 cagcgcgcct tgaggctagg cgctcgacag gtcccgcgac cggcgccaag gtcgcctcca
     2521 aaataacgag ggggaaacgc gtggctgaca ccgacatccg gccgggacga ctgttcttcg
     2581 gcagctgcac agctgtgacg gcgctcgcct tcaccttcgc ggccatgtcg gcggtgatgt
     2641 accagctgaa gctcgagttt cggctcgaca acgcccaggt gggtctgatc ggcggcgcgg
     2701 gcctctgggg tatggcgatc agccagatct ccttttcctc cctctgcgac ctggtcggaa
     2761 tgcgcaacct gctgcgcctg gccctgctgg gccacgtcgc cggcgtcgcg cttttcgtct
     2821 tcgccaccgg cttttcctcg ctcttcgccg cggctctggt gatcgccgtc gccaacggga
     2881 tgatcgaggc tgtctgcaat cctctgacag ccacgcttta cccggaccgc aaggccggca
     2941 tgctcaaccg catgcacatg tggttcccgg gcggcatcgt gctggggggc ctcggctgct
     3001 ggggcctcga ccagatccac gccgactggc gggccaagat ggtgatggtg ctgatcccag
     3061 cgctcgccta cggcgtcatc ttcctgcgcg agaaattccc gcccaccgag gccgccgcgg
     3121 ccggccacaa gctcggcgac gccttcaagg ccgtggccac ctcgccgctg ctctggatgt
     3181 tcctgggcct gatggcgatc accatgagcc tggagctcgg ccccaaccgc tggatccccg
     3241 cggtgctgca ggccggcggc ctgcccggca tattggtgct ggtgatgatc aacggggtca
     3301 tggcggtcac gcgggccaac gcccacgcca tcctggcccg cgtctcgccg ccggtggtgc
     3361 tgatggtctc gacgctcacg gcgggcctgg gcctgctcag cctcagctac tcgacgacca
     3421 cggtgcagac cgtgatctcg gcgctgatct tcgccatcgg catcgccatc gtctggccga
     3481 ccatgatggg cttcgtggcc gagcggacgc ccaagaccgg ggccctgggc ctgggcctga
     3541 tggccgccgc tgggtcgctg gccgttggca tcatcaccac gcccttgctg ggcgagatcg
     3601 ccgaccgcca cctgcccgac gcgctggcca agacctcggt ggtctcggtg gcaggagagg
     3661 tcctggcctt gcagtcgccg aaatctccgc agctgatcgc cgccgcccag gccgtgaccg
     3721 ctgcgcccgc cgagctaccg cccgcgccca ccggcgattt cctgcgccgc gccgccgccg
     3781 gggaggccgg tcccgccatc gccgccaagg cccagccgtt gctggacgcc ggcgagaacc
     3841 attcgggcct gctctccttc cgttacctgg cgcccttcgc cttcggggtc tgtctgatct
     3901 tcggcctggt ggtgctgagc gaccgcaagg ccggcggcta tgcggcccgg gtggccaagg
     3961 ctcggctggt gggcgccgct gaatgacgac gacgcctccg cttcgtatcg ggttcgtggg
     4021 atccggcttc atcgccaggt tccacgccaa gagcttccag tccgtccgcc acgcccagat
     4081 caccggcgtc tacagcccga ccgcggctaa ccgcgatgca ttggttgagg ccgtcaacga
     4141 cgccgagctc ggcccctgcc gcgcgcacgc cgatctgcac agcctgctcg ccgctccgga
     4201 cgtggacgcc atctggctgc tggcccccaa cgaccggcgc ctggaggtca tgcgggcgat
     4261 ccacgccgcg gtgaagtccg gccgctccaa ggtccgcgcc atcgcctgcg aaaagccgct
     4321 gggccgcacc ctggccgagg cccgcgaggt gctgcggctc gccgaagacg ccggcctcgc
     4381 ccacggctat ctggagaacc aggtcttctc caccgccgtc gagcgcggca aggagatcat
     4441 ctggcgtaga gccgtcccgg cctccggccg cccctatctc gcccgcgccg ccgaggagca
     4501 ttccggcccg cacgaaccct ggttctggca gggcgcgcgg cagggcggcg gggtgatgag
     4561 cgatatgatg tgccactccg tggaggtggg gcgcttcctg ctgaccgcgc cggacgccgc
     4621 gcgcagcacc ctgacggtca aggccgtcaa cggctcggtc ggctatctga aatggaccca
     4681 ggacaagtac gccaggtcgc tggccaagga cttcaagggc gtcgagatgc aggcccatcc
     4741 ggtggaggac ttcgcccggg ccaccatcac cctggaagac gaggccggcc aggagctgat
     4801 cgtcgaggca tcgacctcct ggtcctacgt gggcccgggc ctgcgcatcg acctggccct
     4861 gctgggtccc gaatacgcca tggagttctc ctccctgaac cccagcctga aggtctttct
     4921 ctcccgcgcc atcaccggcg gccagggtga ggacctggtg gaaaagcaga acgccgagca
     4981 gggccagatg cccatcgtcg aggacgaggc cggcacctat ggctacatcg gcgagaaccg
     5041 gcacatggtt gactgcttcc gccacggccg cacccccatc gaaaccttcg aagacggcgt
     5101 cgaggtgacc aagatggtca tggcgctcta caaatcggcg gagaccggcc agaccgtgcg
     5161 cctgccggac gaaaccctgg aaacctacgt gccgctaccc gcgcgcactg gaggataagc
     5221 gatgtccacc gagacctacg acgcgatcat cgtcggctcc ggggccggcg gggggatgag
     5281 cgcctatcac ctgacaaggt cgggattgaa ggtgctgatg ctggaggccg ggcgcgacta
     5341 cgacccacgc gtcgagaccc cgatgttcaa caccaacgcc gaggcgccgc tgcgtggggt
     5401 gtcgacaccc gacaagccct tcggcttcta tgacgccacc gtcgatggcg gctgggaggt
     5461 gcccaacgag ccctacacgg tggccgaggg ctccgagccc ttcatctggt ggcggccgcg
     5521 gatgctgggc gggcggacga accactgggg ccgtatcgcg ctgcgcttcg ggccgctgga
     5581 cttcaagccg cacagccgcg acggcctggg ctacgactgg cccatcgcct acgaggacgt
     5641 ggcgccctgg tacgataaga ccgaaaaact gatcggagtc tccggtgcgg cgccggcccg
     5701 gaacctcttg aacacgcccg actcgccgcc cggctgcctg atggaatcgg ccccgccgcg
     5761 cgccttcgag atcttctacg agcgcgcctt cactgccatg ggcatcccgg taatcccgat
     5821 gcatggcgcg gtggttaccg gccagatgga ggggcgcaac acctgcctct tcgccacccc
     5881 ctgcggccgc ggctgcgcca tcggggcgaa cttccagtcg acgaccgtcc tgctgccgcc
     5941 agccatggcg acgggcaacc tgaccatcac caccaatgcg ctcgtctacc aggtcgatct
     6001 cgacaaggcc ggcaaggcca agggcgtcac ctacgtcgac cgcaagaccg gcgagcaccg
     6061 ctcggtgacg gccaagtccg tggtgctggc cgccggctcc ggcgagacgg cgcggatcct
     6121 gctcaactcc aagagttcgc tgttccccaa cgggctttgc aacacccacg gcatggtcgg
     6181 ccgctacctg atggacagcg tcggcaccgg ggtcaccggc cggttcccgt ccatggaggg
     6241 cctgccgccc accaatgacg atggccaggg cacccagcac acctacatcc cctggtgggg
     6301 ctacgagaag cagaaggagc tgggtttcgc ccgcggctat cacatcgaaa tcggcggtgg
     6361 ccgccacatg ccgtccatgg gcatggggag cctgttgcac gacgacgacg tgagcgtcgg
     6421 ggacgatctg cgcgccaagc tgcgcaaccg cttcggctcg accatcggct tcgacggccg
     6481 cggcgagatg atccccaacg acgactgcta ttgcgagatc gacccggtgg ccaaggacaa
     6541 gtggggcatc ccggtcctgc gcttccactg gaagtggggc gagcacgaga ccaaccaggc
     6601 cgcccacgcg gtgaagacct tcctggcggt catcgacaag ctgggcggga cgcccgaggg
     6661 ccatgtggag accgatggca aaaaggcgat ctccaagggc ggcgagatga tccacgagat
     6721 cggcaccgcg cgcatgggcc acaacgacac cgactcggtg gtcaaccagt acggccagag
     6781 ctgggcggtc cagaacctct tcatcatgga cggggcgacc atggtctcga gccccgacaa
     6841 gaacccgacc ctgtcgatcc tggccctggc ctggcgctcg gccgacaaca tggcgaccat
     6901 cgcgaagcag ggggccctat gagcgcca
//
LOCUS       DATAJL010000911         2486 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75032,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000911 DATAJL010000000
VERSION     DATAJL010000911.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75032"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1204
                     /locus_tag="VHN39_17150"
     CDS             <1..1204
                     /locus_tag="VHN39_17150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003168478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA ligase-associated DEXH box helicase"
                     /protein_id="HEX2818124.1"
                     /translation="YDEVRSAGPYRDLIWEDFEQVVDFVSTGGYALKNYDKFRRIVKG
                     QDGLWRVRNAETAQRHRLSVGAIVSSAMLSVRVATRRGGGGRKVGEIEEGMVEMLEPG
                     ETFVFAGQVWRLVGVTNLDVLVQPAPSADPKMPSWGGSKFALSTYLAKRVRQLMTDQP
                     HWQVLPADVREWLEAQRDRSVIPEEDEMLLETFPRGRRNFMVCYPFEGRLAHTTLAML
                     LTRRLERIGAAPLGFVCNDYALAVWALTPLDGLDFGSLFDEDMLGDDLEAWLAESFMM
                     KRAFKGCAIIAGLIERRFPGEQQKTGRQITFSTDLIYDTLRRHQPDHLLLRCARDDAA
                     TGLIDVARLGQMLARIKGRIRHAPLEHLSPFSVPILLEIGKERSPGQAGEMILREAAD
                     DLIAEAMQ"
     gene            1201..1932
                     /gene="pdeM"
                     /locus_tag="VHN39_17155"
     CDS             1201..1932
                     /gene="pdeM"
                     /locus_tag="VHN39_17155"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013270721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ligase-associated DNA damage response
                     endonuclease PdeM"
                     /protein_id="HEX2818125.1"
                     /translation="MSAVAARDVAYDYSQSPCGGLLTRIGAAEAMLRCSGALWLAAER
                     ALVVADLHLEKGSSYAARGQMLPPYDTRETLSRLAAEVAALTPAVVILLGDTFHDRKS
                     EGRLAEDDAERLRELARDRTLIWVVGNHDADGPRALPGDVADELGLCGLTLRHEPQPG
                     LQPREVSGHLHPAARVRATRGSVRRRCFITDAERLILPAFGAYAGGLNVRDQAFAGLF
                     ARPPLAGALGVDRVHAVGWRSLGPD"
     gene            1981..2424
                     /locus_tag="VHN39_17160"
     CDS             1981..2424
                     /locus_tag="VHN39_17160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818126.1"
                     /translation="MTGLGPIAELRAGKQTVAMVTGMGPSSANSPLLVGSLRVRQVAG
                     TVSMLALVCTGILALAAVFYHQAILGTAALGALVTCGFANGVIEMWRGYFLWHTGAWA
                     GLSGQRFTREQQPARFVVWITMHLLIAMVWIGVAGYLTGTLAQRL"
BASE COUNT          371 a          881 c          822 g          412 t
ORIGIN      
        1 ctacgacgag gtgcgcagcg ccggccccta ccgcgacctg atctgggagg acttcgagca
       61 ggtggtcgac ttcgtctcga ccggcggcta cgcgctgaag aactacgaca agttccgccg
      121 catcgtgaaa ggccaggacg gcctctggcg cgtccgcaac gccgagaccg cccagcgtca
      181 ccgcctgagc gtcggcgcca tcgtctcgtc ggccatgctc tcggtccgcg tcgccacgcg
      241 gcgtggcggt ggcggccgca aggtcggcga gatcgaggag ggcatggtcg agatgctgga
      301 gcccggcgag accttcgtct tcgccggtca ggtctggcgg ctggtgggcg tcaccaacct
      361 cgacgtcctc gttcagccgg cgccgtccgc cgacccgaag atgccgtcct ggggcgggtc
      421 caagttcgcg ctctccacct atctggccaa gcgcgtgcgc cagctgatga ccgaccagcc
      481 ccactggcag gtgctgcccg ccgacgtccg cgaatggctc gaagcccagc gcgaccgctc
      541 cgtcatcccc gaggaagacg agatgctgct ggaaaccttc ccgcgaggcc ggcgcaattt
      601 catggtctgc taccccttcg agggccgtct ggcgcacacg acgctcgcca tgctgctgac
      661 gcggcggctg gagcggatcg gcgccgcgcc cctgggcttc gtctgcaacg actacgcgct
      721 ggcggtctgg gcgctgacgc cgctcgacgg cctggacttc ggctctctct tcgacgagga
      781 catgctgggc gacgaccttg aggcctggct cgccgaaagc ttcatgatga agcgcgcctt
      841 caagggctgc gcgatcatcg cggggctgat cgagcggcgc tttccgggcg aacaacaaaa
      901 gacgggacgc cagatcactt tctccaccga cctgatctac gacacccttc gccgccacca
      961 gccggatcac ctgctgctgc gctgcgcgcg ggacgacgcg gcgaccggcc tcatcgatgt
     1021 ggcgcggctg ggccagatgc tggcgcgcat caagggccgc atccggcacg cgcccctgga
     1081 gcacctgtcg cccttctcgg tgccgatcct gctggagatc ggcaaggagc gcagccctgg
     1141 ccaggccggc gagatgatcc ttcgcgaagc cgccgacgac ctgatcgccg aggccatgca
     1201 atgagcgccg tcgccgcccg ggacgtcgcc tacgactatt cgcagagtcc ctgtggcggc
     1261 ctgctcaccc ggatcggcgc ggccgaggcc atgctgcgct gctccggcgc cctgtggctc
     1321 gccgccgagc gcgcgctggt ggtcgccgac ctgcacctgg agaagggcag ttcctacgcc
     1381 gcccgcggcc agatgctgcc gccctacgac acccgcgaaa ccttgagccg actggccgcc
     1441 gaggtggcgg cgctcacgcc ggccgtggtc atcctgctgg gcgacacctt tcatgaccgc
     1501 aagtccgagg gccgcctggc cgaggacgat gccgaacgcc tgcgcgagct cgcccgcgac
     1561 cgcacgctga tctgggtggt cggcaaccat gacgccgacg ggccccgagc cttgccgggc
     1621 gacgtcgccg acgaactggg cctctgcggc ctcaccctgc gccacgaacc acagcccggt
     1681 ctgcaacccc gcgaagtctc gggccacctg caccccgccg cccgcgtgag ggccacgcgc
     1741 ggcagcgtgc gccgccgctg cttcatcacc gacgccgagc ggctgatcct gccggctttc
     1801 ggggcctatg ccgggggcct gaacgtccgc gaccaggcct tcgccggcct cttcgcccgc
     1861 ccgccactgg ccggagcgtt gggcgtcgac cgggtgcatg ctgtgggctg gcgttcgctg
     1921 gggccggatt aaggccgaac tcataaaccc gggcagggcc ctatatcgga cagagagcca
     1981 atgaccgggc tcggacccat tgcggaactt cgtgctggaa agcagactgt tgcgatggtg
     2041 accggcatgg gcccttcgtc ggccaactct ccgctactgg ttggttctct tcgcgtgcga
     2101 caggtcgcgg gcaccgtgag catgctcgct ctcgtttgca cgggcatcct ggctctagca
     2161 gcggtcttct atcaccaggc catcctgggg accgccgccc tcggcgcact agtcacctgc
     2221 ggcttcgcca atggcgtgat cgaaatgtgg cgaggctatt tcctttggca cacgggggct
     2281 tgggctggcc tgagcggcca gcgcttcacg cgcgaacagc aacctgcgcg cttcgtagtc
     2341 tggataacaa tgcacctgct catcgcaatg gtctggatag gtgttgcggg ctatttgacc
     2401 gggaccctag cgcaacgtct ctaaggtcca ctttccaccc ttggcggtcg ttcggagagt
     2461 ccgcttgcca gttggtcgaa gggagt
//
LOCUS       DATAJL010000912         3768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_88606,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000912 DATAJL010000000
VERSION     DATAJL010000912.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3768
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88606"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..320
                     /locus_tag="VHN39_17165"
     CDS             <1..320
                     /locus_tag="VHN39_17165"
                     /inference="COORDINATES: protein motif:HMM:NF027664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FecR domain-containing protein"
                     /protein_id="HEX2818127.1"
                     /translation="RVTVGQELTHTEGQTAQVLKVSDPDQAFAWTSGQLIYRDQPLSD
                     VAADLSRRFARPVRIADARTAALRFSGVLVTDNETDVLRRLQAYTPVRAERSGDAVVL
                     SRR"
     gene            complement(317..1078)
                     /locus_tag="VHN39_17170"
     CDS             complement(317..1078)
                     /locus_tag="VHN39_17170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818128.1"
                     /translation="MPSAKAPFIYLATPCYGGVLTLQFMQSTLALQQACQERGIGLHI
                     DLMGGDALITRARSRLAARFLAHPHATHILFSDADIGFAPEDVFRLLEADKPMIAAVC
                     PLKYIDWDRVRVAVKAEAPDLMAASLGYVVRFIPTADHSVEIENGFAKVAYGGTGFLM
                     IRRDALQQIVDAHPELRAKMGDMGDRLADEAVMVFETMIEPETGQYLSEDYAFCRRWH
                     DLGGEIWADMQARLTHTGSATYAGSLMEAMSLPGL"
     gene            complement(1094..1945)
                     /locus_tag="VHN39_17175"
     CDS             complement(1094..1945)
                     /locus_tag="VHN39_17175"
                     /inference="COORDINATES: protein motif:HMM:NF023354.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-dependent oxidative N-demethylase subunit
                     alpha family protein"
                     /protein_id="HEX2818129.1"
                     /translation="MRPRHRPWEEAADFQIGLKPIALEDWLEGGEADPAARKDALLAA
                     RPGLVWAETPASRPGQAEVLELVRAALGPALVPPDLAPRPDLPPLPDLPPLYAAARRV
                     PDDLCLMERRDGAWRLTALSLSAGSFFTAEEVIGKSLAELHGPVTGFAERFLVRVQRI
                     FEGLRPGLVLERRNWTLLNSPALHTPSSVPIRATIGEIAPAEAGAALHLRVERQTLRR
                     LPRTGGALFTIRVWLAPLADLAHEPERLAAFARAWRDATPELRAYKRFDLYDDLVEAF
                     LRDSHLA"
     gene            complement(1942..2316)
                     /locus_tag="VHN39_17180"
     CDS             complement(1942..2316)
                     /locus_tag="VHN39_17180"
                     /inference="COORDINATES: protein motif:HMM:NF016763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEX2818130.1"
                     /translation="MPPFDLLRRLPRPFRLALYGLACLILLYLTLAPGKDVPGVGLVW
                     DKAEHAISWAVLTGAGLLLSTRRRWAIGLFAFAFGAAIEVLQATLPFGRDGDWRDLAA
                     DTVGIGVAYLVWAIWRRLGWVK"
     gene            2385..3044
                     /locus_tag="VHN39_17185"
     CDS             2385..3044
                     /locus_tag="VHN39_17185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEX2818131.1"
                     /translation="MSVEAVIWDFGGVFTSSPFEAFNRFEAERGLPKDLIRRINATNH
                     HDNAWALFERNEVDTDRFDQLFLEEATALGHPVRGADVLPLLSGAVRPRMVAALKTCK
                     QHFKVGCITNNVVSMHSPGQDEIQRAAGAMGQIMPLFDAIIESSKAGVRKPDPKIYLM
                     MCELLAVAPESCVYLDDLGINCKPAAALGMTAIKVVDVDQTLTELARATGLTFAAEDL
                     G"
     gene            3041..3394
                     /locus_tag="VHN39_17190"
     CDS             3041..3394
                     /locus_tag="VHN39_17190"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004624448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEX2818132.1"
                     /translation="MSRPQKIPLSSALERLPVWAAAPGEREAIFRQVVFGDFSRAFGF
                     MSRVAMQAEKLDHHPEWSNVYRKVDILLTTHDAGGVTELDVEMAKFIDAAALQCGAVD
                     PPRPKRPRPGFPPKK"
     gene            3427..>3768
                     /locus_tag="VHN39_17195"
     CDS             3427..>3768
                     /locus_tag="VHN39_17195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2818133.1"
                     /translation="MSGRVAGKKAFITGGAQGLGAAMGRKLAAEGAKVSLADINLEGA
                     KTVAAEINAAQGAGTAFAFPLDVTKEEQWIFALEAADEAMGGISVLVNNAGISRGGDI
                     ESLTLDDWKLVM"
BASE COUNT          640 a         1291 c         1303 g          534 t
ORIGIN      
        1 cccgggtcac ggtcggccag gagctgaccc acaccgaggg ccagacggcg caggtcctga
       61 aggtgtccga tccggaccag gccttcgcct ggaccagcgg ccagctgatc taccgcgacc
      121 agccgctctc cgacgtcgcc gccgacctct cgcgccgttt cgcgaggccc gtgcgcatag
      181 ccgacgcccg caccgcggcc ctgcggttct ccggcgtgct ggtgaccgac aacgagaccg
      241 acgtactgcg ccgtctgcag gcttatacgc cggtgcgcgc cgagcgctcg ggcgacgcgg
      301 tggtccttag ccgccgctaa agtccgggca ggctcatcgc ctccatgagg ctgccggcat
      361 aggtcgccga cccagtatgc gtcaggcgcg cctgcatatc cgcccagatc tcgccgccca
      421 ggtcatgcca acgccggcag aaggcgtagt cctcggacag gtactggccg gtctccggct
      481 cgatcatggt ctcgaagacc atcaccgcct cgtcggccag ccggtcgccc atatcgccca
      541 tcttggcgcg cagctcggga tgggcgtcga cgatctgttg cagggcgtcg cggcggatca
      601 tcaggaagcc ggtgcctcca taggcgactt tggcgaaccc gttctcgatt tccacggagt
      661 ggtcggcggt gggaatgaag cgcacgacgt agcccaggga ggcggccatc agatcgggcg
      721 cttcggcctt cacggcgacg cgcacgcggt cccagtcgat atatttcagg ggacagacgg
      781 cggcgatcat cggcttgtcg gcctcgagca gccgaaagac gtcttccggc gcgaagccta
      841 tgtcagcgtc gctgaagagg atgtgggtgg cgtgcggatg cgccaggaac cgcgccgcca
      901 gccggctgcg cgcgcgggtg atcagggcgt caccgcccat caggtcgatg tgcaggccaa
      961 tgccacgttc ctggcaagcc tgctgcagcg ccagcgtcga ctgcatgaac tgcagagtga
     1021 gcaccccgcc gtaacagggc gtcgccagat agataaaggg cgctttagcg gacggcatgg
     1081 ggtctcccag ggctcaggcc aggtgtgagt cgcgaaggaa agcctccacc agatcatcgt
     1141 agaggtcgaa ccgcttatag gcgcgcagtt ccggcgtggc gtcacgccag gcccgggcga
     1201 aggccgccag ccgctcgggc tcgtgggcca agtccgccag gggcgccagc catacccgga
     1261 tcgtgaacag cgccccgccg gtcctgggca ggcgccgcag ggtctggcgc tccacccgta
     1321 gatgcagggc ggcgcccgcc tcggctggcg caatctcgcc gatcgtcgcc cggatcggga
     1381 ccgacgacgg cgtgtgcagc gcgggcgagt tgagcagggt ccagttgcgc cgctccagca
     1441 ccaggcccgg ccgcagaccc tcgaagatcc gctgcacgcg gaccaggaac cgctcggcga
     1501 agccggtgac cgggccgtgc agttcggcga ggctcttgcc gatcacctcc tcggcagtga
     1561 agaagctgcc ggccgagagc gacagcgcgg tcagccgcca ggccccatcg cgcctttcca
     1621 tcaggcacag gtcgtccggg acccgccgcg cggcggcata gagcggggga agatcgggga
     1681 gcggaggaag atcggggcgc ggcgccaggt ctggcgggac aagcgcgggc cccaaggccg
     1741 cccggaccag ctccagcacc tcggcctggc ccggccgcga cgccggagtc tccgcccaga
     1801 ccaggcccgg gcgggccgcc agaagcgcgt ccttgcgcgc cgcgggatcg gcctcgccgc
     1861 cctccagcca gtcttccagc gcgatgggct tgaggccgat ctggaagtcg gcggcctctt
     1921 cccagggacg gtggcgtggc ctcacttgac ccagcccagc cgccgccaga tggcccagac
     1981 cagataggcc acgccgatgc ccaccgtgtc ggcggcaagg tcacgccagt cgccgtcgcg
     2041 gccgaagggc agcgtggcct gcagcacctc gatcgccgcc ccgaaggcga aggcgaacag
     2101 cccgatcgcc catcggcgcc tggtcgatag caagagaccg gcgcctgtga gcacagccca
     2161 ggaaatcgcg tgctcggcct tgtcccagac cagcccgacg cctgggacgt ccttgccggg
     2221 ggcgagcgtc aaatagagca ggatcaggca ggccagccca tagagcgcca ggcgaaaggg
     2281 gcggggcagg cggcgcagaa ggtcgaaggg cggcatcggc ccttacttgc acgtccgcgc
     2341 ccgcctctct agcgtccggc gcctgtcgaa atgcggagtt ccgaatgtct gtcgaggcgg
     2401 tgatctggga tttcggaggg gtgttcacct cctcgccgtt cgaggccttc aaccgcttcg
     2461 aggccgagcg cggcctgccg aaggatctga tccggcggat caacgcgacg aaccatcacg
     2521 acaacgcctg ggcgctgttc gagcgcaacg aggtcgacac cgaccgcttc gaccagctgt
     2581 tccttgagga agcgacggcg ctcggccatc cggtgcgcgg ggcagacgtc ctgccgttgc
     2641 tgtcgggcgc cgtgcgtccg cgaatggtgg cggcgctgaa gacctgcaag cagcacttca
     2701 aggtgggctg catcaccaac aacgtggtct cgatgcacag ccccggccag gacgagatcc
     2761 agcgcgcggc cggcgccatg ggccagatca tgccgctgtt cgacgcgatc atcgagagct
     2821 ccaaggccgg cgtccgcaag cctgacccga agatctacct gatgatgtgc gagctcctgg
     2881 ccgtggcccc ggaaagctgc gtctacctcg acgacctggg catcaactgc aaaccggccg
     2941 cggcgctcgg catgaccgcg atcaaggtgg tggacgtgga ccagaccctg accgaactcg
     3001 cccgggcgac gggcctgacg tttgcggcgg aggatttggg atgagccggc cccagaagat
     3061 ccccctgtcc tcggcgctcg aacgcctgcc ggtgtgggcc gcggccccgg gtgagcgcga
     3121 ggcgatcttc cgccaagtgg tattcggcga cttcagccgc gccttcggct tcatgagccg
     3181 ggtcgccatg caggccgaga agctcgacca ccatccggag tggagcaatg tctaccgcaa
     3241 ggtcgacatc ctgctgacca cccacgacgc tggtggcgtg acggagctgg acgtcgagat
     3301 ggcgaaattc atcgacgccg cggcgctgca atgcggggcg gttgatccgc cccggccaaa
     3361 acggccgagg cctgggtttc cgcccaagaa atagcctccg gctcaacgaa cttagggagt
     3421 ttccacatgt caggacgggt cgcgggcaag aaggccttca tcaccggggg cgcccagggg
     3481 ctgggcgcgg ccatggggcg caagctcgcc gccgagggcg ccaaagtctc cctggccgac
     3541 atcaacctcg agggcgccaa gaccgtcgcc gccgagatca acgcggccca gggcgccggc
     3601 acggccttcg ccttccccct cgacgtcacc aaggaggagc agtggatctt cgccctagag
     3661 gcggcggatg aggccatggg cggcatctcg gtgctggtga acaacgccgg catcagccgc
     3721 ggcggcgata tcgagagcct gacgctcgac gactggaagc tggtcatg
//
LOCUS       DATAJL010000913         5581 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101695,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000913 DATAJL010000000
VERSION     DATAJL010000913.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5581
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101695"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VHN39_17200"
     CDS             <1..596
                     /locus_tag="VHN39_17200"
                     /EC_number="2.8.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008146 - sulfotransferase activity
                     [Evidence IEA];
                     GO_function: GO:0050656 - 3'-phosphoadenosine
                     5'-phosphosulfate binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sulfotransferase"
                     /protein_id="HEX2818134.1"
                     /translation="PRYPGVLADMTAEDFRRLGEAYLADTQVYRSGRPRFIDKMPNNF
                     RHIGLIHLMLPNARIIDARRDPMSCCFSNLKQLFAQGQEFTYSVDDIARYYRSYLDLM
                     AHWDAALPGRILRVQHEDVIADLEGSVRRMLDHCGLEFEPACVEFHKTRRSVRTPSSE
                     QVRQPIFRDGLDQWKTYEPWLGPLERALGDALERYRD"
     gene            complement(593..1387)
                     /gene="phnX"
                     /locus_tag="VHN39_17205"
     CDS             complement(593..1387)
                     /gene="phnX"
                     /locus_tag="VHN39_17205"
                     /EC_number="3.11.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016827 - hydrolase activity, acting on
                     acid carbon-phosphorus bonds [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA];
                     GO_process: GO:0019635 - 2-aminoethylphosphonate catabolic
                     process [Evidence IEA];
                     GO_process: GO:0019636 - phosphonoacetate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0019700 - organic phosphonate catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonoacetaldehyde hydrolase"
                     /protein_id="HEX2818135.1"
                     /translation="MTGGGMSGKGEGAFDLVIFDWAGTMVDFGCCAPIAAYVEAFGRR
                     GVTLAEAAARADMGIAKVDHVRALLARAEVARDWKAAQGRDPTEADVEALMADLGPLM
                     RDAAAVASQLIPGAAETVAALRARGLRIASSTGYTREMMAPVLARAAEQGYAPDHVVC
                     AGETPQGRPSPLMIYKACAELGVWPLSRVVKVDDAEAGVAEGRAAGCFTVGVAASGNS
                     VGLSLEAFQALDAADRERRLAAARASLLAAGADVVIDTVADLPGLL"
     gene            complement(1384..2526)
                     /locus_tag="VHN39_17210"
     CDS             complement(1384..2526)
                     /locus_tag="VHN39_17210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03364 family FAD-dependent oxidoreductase"
                     /protein_id="HEX2818136.1"
                     /translation="MAAAGTYDLAVVGAGIVGMACALAAARRGKRVVVIDRDAQANGA
                     SVRNFGFVTVTGQERGEMWWRARRTRDIWADVAPEARIPVLHRGLVMTARRVEAVAVL
                     EAFLEAEMGEGCRLLAPGEARRDYPHLACDGLLAALWSPHDLRVESRQAIPRLAAWLE
                     ARHGVNFLWGAAALSVETGKVSTTRGAVEAATVAVCPGDDLFTLFPERIAAAGLVRCK
                     LQMLRLADPGFRLSAAVMSDLGLARYAGYAALPQAGALVARLAAEQPEHLANGVHLIV
                     VQSADGSLVVGDSHHYAPTPDPFSQQAVDDLILDEFAAVFGQPASPVIERWTGTYASA
                     QDRTVLVDTPMDGVRLVMVTTGAGASTGFALGEEVVADLMGEGATA"
     gene            2679..4001
                     /locus_tag="VHN39_17215"
     CDS             2679..4001
                     /locus_tag="VHN39_17215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5690 family protein"
                     /protein_id="HEX2818137.1"
                     /translation="MGGKLQERLARANPILFTAVAGLAGFCAYFSMYAFRKPFTAATF
                     EAVPGWTFTLDYKIALVLAQVAGYALSKLIGIKVVSELSPARRGAAILLLIGLSWLAL
                     VAFAVIPAPWNVAALFFNGLPLGMIWGLVFGYMEGRRVSEALGAILCASFILSSGVVK
                     SVGAWLMNAGHVDRFWMPAAAGALFFPLLLVSVWVLGQLPPPNAADEAQRVRRAPMSA
                     AERGAFLAVYWPGVTLLTASYILLTAFRDFRDNFAAEIWTALGYGKESGVFTQSELPV
                     AAIALVALAAVMAVRDNLKALMVIHGIIVAGFLLLGGCAWAFEAHLISPLTFMILAGA
                     GLYLAYTPFNAMLFDRLVAFSGRVATAGFLIYVADASGYLGSAALVVWRNFGALKMDW
                     LRFFILSAYATSAVGAVLSAAAAIYFLRQGRSRRPQEAPGPVDLSAAA"
     gene            complement(4037..5272)
                     /locus_tag="VHN39_17220"
     CDS             complement(4037..5272)
                     /locus_tag="VHN39_17220"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012337.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-[acyl-carrier-protein] synthase
                     family protein"
                     /protein_id="HEX2818138.1"
                     /translation="MNRIAVTGLGAISALGATVEENWQAAVAGRGGIERTLMGDSPYG
                     PGGLELPMARVADGYDALLDERLGRPMAAGLDPFARFVLGPALEALEQSGLRGHGVLE
                     ERTAIVFGHGLGGLATMETSYERFFGQKSARMHPSTVPRVMVSAGVSAAAMAFGVKGP
                     VFAVSSACASSAHAVAQGATMIATGQVDAALVGGSEAASTGGSIRAWEAIRAMSPVTC
                     RPFSADRDGMVLGEGGAVLMLEAWDHAQARGAAILGELIGWGMSSDAFHITQPSPEGQ
                     ARAMRQAARQANALDRDDILISAHGTGTPLNDAAETQSLVEVFGERARAMPVIATKSA
                     HGHLIGGSAALQAALGLRALAEGLAPPILNFTERDPACDLDLVTGEARPIASRLLLQN
                     AFAFGGLNVALMFAGPSGG"
     gene            complement(5286..5543)
                     /locus_tag="VHN39_17225"
     CDS             complement(5286..5543)
                     /locus_tag="VHN39_17225"
                     /inference="COORDINATES: protein motif:HMM:NF012759.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEX2818139.1"
                     /translation="MAQVIPSDDELFDVISKEALIDRATLTRDANLEDLGIASLDVIS
                     VLFEVEERFGIVVEAEELGDCKTLGQLMDKLKARGQAPASA"
BASE COUNT          830 a         2031 c         1883 g          837 t
ORIGIN      
        1 atccacgcta ccccggggtg ctggcggaca tgaccgccga ggatttccga cggctgggcg
       61 aggcctatct ggcggatacg caggtctacc gctcaggccg gccgcgcttc atcgacaaga
      121 tgccgaacaa cttccggcat atcggcctga tccacctgat gctgcccaat gcgcggatca
      181 tcgatgcgcg gcgcgatccg atgtcctgct gcttctcgaa cctgaagcag ctcttcgccc
      241 agggacagga gttcacctac agcgtcgacg acatcgcccg ttactaccgc agctatctcg
      301 acctgatggc gcactgggac gcggcgctgc ccggccgtat cctgcgtgtg cagcacgagg
      361 acgtgatcgc cgacctggaa ggcagcgtgc gccggatgct ggaccattgc ggcctggaat
      421 tcgagccggc ctgcgtcgag ttccacaaga cccggcgaag cgtgcgcacg cccagctccg
      481 agcaggtgcg ccaaccgatc ttccgcgacg gcctcgacca gtggaagacc tacgagccct
      541 ggctcggccc cctcgaacgc gccctgggcg acgcgctcga gcgctaccgc gactagagca
      601 ggcccggcag gtccgccacg gtgtcgatca cgacatccgc gccggcggcc agcagggagg
      661 cgcgcgcggc cgcaagccgg cgctcacgat cggcggcgtc gagcgcctgg aaggcctcca
      721 gcgaaagacc aacgctgttg ccggacgccg ccacgccgac ggtgaaacag ccggcggccc
      781 ggccctcggc gaccccggcc tcggcgtcgt ccaccttgac cacccggctc aatggccaga
      841 cgccgagctc ggcgcaggcc ttgtagatca tcaggggaga gggacggccc tgcggggttt
      901 cgccggcgca gaccacgtgg tcgggcgcat acccctgctc ggcggcccgg gccagcaccg
      961 gcgccatcat ctcgcgggtg tagccggtgg aggaggcgat ccgcagtcca cgggctcgaa
     1021 gggccgccac cgtctccgcg gctccgggga tcaattgtga cgccaccgcc gcggcgtcgc
     1081 gcatcagcgg gccgaggtcg gccatcaggg cctcaacgtc agcctcggtc ggatcgcgtc
     1141 cctgcgccgc cttccagtcc ctggccacct ccgcccgcgc cagcagagcg cgcacgtgat
     1201 cgaccttggc gatccccatg tcggctcggg ccgcggcctc ggccagggtg acgccgcgcc
     1261 ggccgaaggc ctcgacgtag gccgcaattg gcgcgcagca tccgaagtcg accatggtgc
     1321 ccgcccagtc gaagatcacc aggtcgaacg cgccctcgcc cttgcccgac ataccgccgc
     1381 ccgtcatgcc gtcgctcctt cgcccatgag gtcggccacg acctcctcgc ccagcgcaaa
     1441 gccggtcgac gcgcccgcgc ccgtggtgac catcaccagc cgcacgccgt ccatcggcgt
     1501 gtcgaccagc actgtgcggt cctgcgccga ggcataggtg ccggtccacc gttcgatcac
     1561 cggagaggcc ggctggccga acaccgcggc gaactcgtcc aggatcagat cgtcgaccgc
     1621 ttgctgcgaa aagggatcgg gggtcggcgc gtagtgatgg ctgtcgccca cgaccaggct
     1681 gccgtcggcg ctttgcacga cgatcaggtg gacgccgttg gccaggtgct ccggctgctc
     1741 cgcggccagg cgcgcgacga gggctccggc ctgaggcagg gccgcatagc cggcgtagcg
     1801 ggccagcccg agatcggaca tcaccgccgc cgaaagccta aagcccggat cggccagccg
     1861 cagcatctgc agcttgcagc ggaccaggcc cgccgctgcg atccgctcgg ggaacagggt
     1921 gaagaggtca tcgcccggac agaccgccac cgtcgcggcc tcgacagcgc cgcgggtcgt
     1981 cgagaccttg ccggtctcca ctgacagcgc cgccgcgccc cagaggaaat tcaccccgtg
     2041 gcgcgcctcg agccaggcgg ccagacgcgg tatggcctgc cgagactcca cgcgcaggtc
     2101 gtgcgggctc cagagcgcgg ccaggagacc gtcgcaggcc aggtgcgggt agtccctccg
     2161 ggcctcgccc ggggccagca ggcggcaacc ctcgcccatc tcggcctcca ggaaggcctc
     2221 caggaccgcg acggcctcga cgcggcgggc ggtcatcacc aggccccggt ggaggaccgg
     2281 gatgcgggcc tcgggcgcga catcggccca gatgtcccgg gtgcgtcggg cgcgccacca
     2341 catctcgccc cgttcctggc cggtcacggt cacgaagccg aagttgcgca ccgaggcgcc
     2401 attggcctgg gcgtcccggt cgatcaccac cacgcgcttg ccgcgccgcg cggccgccag
     2461 cgcgcaggcc atcccgacga tgcctgcccc cactaccgcg agatcgtatg tgccggccgc
     2521 ggccatggcc ttcctcaaaa acgagcgtcg aaccggctca agagacatca agaccatgac
     2581 agcttgacag ctctggcgtc accagaccgt catcgatgtc tccaatgctg gcgaaaccct
     2641 gcgcaaaccc gcgccagacg tcaccgaaga ggcgcgcctt gggcggcaaa ctgcaagagc
     2701 gactggctcg ggccaatccg atcctgttca ccgccgtggc cgggctggcg gggttttgcg
     2761 cctatttctc gatgtacgcc ttccgcaagc cgttcaccgc ggcgaccttc gaggccgtgc
     2821 cgggctggac cttcaccctg gactacaaga tcgccctcgt gctggcccag gtcgccggct
     2881 atgcgctctc gaagctgatc ggcatcaagg tggtgtcgga gctcagcccc gcccggcgcg
     2941 gggcggcgat cctgctgctg atcggcctgt cttggctggc gctggtggcc ttcgcggtta
     3001 tcccggcgcc ctggaacgtc gcggcgctgt tcttcaacgg cctgccgctc ggcatgatct
     3061 ggggcctggt gttcggctat atggagggcc gacgggtgtc ggaggcgctg ggcgccatcc
     3121 tgtgcgccag cttcatcctg tcctcgggcg tcgtgaagtc ggtgggcgcc tggctgatga
     3181 acgcaggcca cgtcgaccgg ttctggatgc ccgcggcggc cggggcactg ttcttcccgc
     3241 tactgctggt ctcggtctgg gtgctcggcc agctgccgcc gccgaacgcc gccgacgagg
     3301 cccagcgggt caggcgcgcg ccgatgagcg cggcggagcg cggagccttt ctggccgtct
     3361 attggccggg cgtgacgctg ctgaccgcgt cctacatcct gctgaccgcc ttccgcgact
     3421 tccgtgacaa cttcgcagcc gagatctgga ccgcgctggg ctacggcaag gagtccggcg
     3481 tcttcaccca gagcgaactg cccgtggcgg ccatcgcctt ggtggcgctg gccgccgtga
     3541 tggcggtgcg cgacaacctg aaggccttga tggtgatcca cgggatcatc gtcgcgggct
     3601 tcctgctact gggcggctgc gcctgggcgt tcgaggccca cctcatctcg ccgctgacct
     3661 tcatgatcct ggccggcgcc gggctctacc tggcctacac gccgttcaac gccatgctgt
     3721 tcgaccgcct tgtggcgttc agcgggcggg tcgcgacggc ggggttcctg atctacgtgg
     3781 ccgacgcctc cggctacctg gggagcgccg ccctggtggt ctggcgcaat ttcggtgcgc
     3841 tcaagatgga ctggctgcgg tttttcatcc tcagcgccta tgcgaccagc gcggtgggcg
     3901 ccgtgctctc cgcggccgcg gcgatctact tcctgaggca aggccgttcg aggcgcccgc
     3961 aggaggctcc gggccccgtc gacctttctg cagccgccta ggcgccacgg cgatctggcc
     4021 ggggcgccgc cggcggctag ccgccgctcg ggcctgcgaa catcagcgcc acgttcaggc
     4081 cgccgaacgc aaaggcgttc tgcagcaaga gtctcgaggc gatgggtctg gcctcgccgg
     4141 tcaccaggtc gaggtcacaa gccgggtcgc gctcggtgaa gttgaggatc ggcggggcga
     4201 ggccctcggc cagggcgcgc aggcccaacg ccgcctggag ggccgccgaa ccgccgatca
     4261 ggtggccgtg ggcgctcttg gtggcgatga ccggcatggc ccgcgcccgc tcgccgaaca
     4321 cctccaccag ggactgggtc tcggccgcat cgttcagcgg tgtgcccgtg ccatgggcgg
     4381 agatcagaat gtcgtcccgg tcgagggcgt tggcctggcg ggccgcctgg cgcatggccc
     4441 gcgcctggcc ctccggcgag ggctgggtga tgtggaaagc gtccgacgac attccccagc
     4501 cgatcagctc gccgaggatc gcagcacccc gcgcctgggc gtggtcccag gcctccagca
     4561 tcaggaccgc cccgccctcg cccagcacca tgccgtcgcg gtcggccgag aacgggcggc
     4621 acgtcaccgg cgacatggcc ctgatcgcct cccaggcgcg gatggacccg ccggttgagg
     4681 ccgcctcgct gccgcccacc agcgcggcgt ccacctggcc cgtggcgatc atcgtcgcgc
     4741 cttgcgcgac ggcgtgggcg gaagaggcgc aggcgctgga gacggcgaac accggcccct
     4801 tgacgccgaa ggccatcgcc gcggcgctga caccagcgct gaccatcacc cgtggaacgg
     4861 tggacggatg catgcgcgcg gacttctggc cgaagaagcg ctcgtagctg gtctccatgg
     4921 tcgccaagcc acccaggccg tggccgaaca cgatcgcagt ccgctcttcc agcacgccgt
     4981 ggccgcgcaa gcccgactgt tccagggctt caagcgccgg acccagcacg aaccgggcga
     5041 agggatcgag gcccgcggcc atcggtcggc ccagccgttc gtccagcaag gcgtcataac
     5101 cgtcggcgac acgggccatg ggcagctcca gcccgcccgg gccgtagggg ctgtcgccca
     5161 tcagggtgcg ttcgatgccg ccgcggcccg cgaccgcggc ctgccagttc tcctcgaccg
     5221 tggctccaag cgccgaaatc gcgcccaggc ccgtcacagc gatgcgattc acgggtggct
     5281 ctgtttcaag ccgacgccgg cgcctggccg cgggccttca gcttgtccat cagctggccc
     5341 agcgtcttgc agtcgcccag ctcctcagcc tcgaccacaa taccgaaccg ctcctcgacc
     5401 tcgaagagca cgctgatcac gtcgagcgag gcgatgccca ggtcttccag attggcgtcg
     5461 cgcgtgaggg tcgcccggtc gatcagggct tccttggaga tcacgtcgaa gagctcatcg
     5521 tcacttggga tcacttgggc catgacgatg ctttagtccg taaaaccgac cgccacaaac
     5581 g
//
LOCUS       DATAJL010000914         2395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75091,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000914 DATAJL010000000
VERSION     DATAJL010000914.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75091"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1076
                     /locus_tag="VHN39_17230"
     CDS             <1..1076
                     /locus_tag="VHN39_17230"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX2818140.1"
                     /translation="DSSVGADTVLGGQGADLITFTGTGNAFIDGNLGNDSIVITGGAA
                     AQVMKLSGEDGTDTIDAHAGLGKYNIDGGAGDDSILGSIHADTLSGSDGNDTIQDGGG
                     ANVIDGGNGNDQITLTGLHDTANETITGGAGNDIISDGAETTSGVDKIDGGDGNDSIN
                     FATSSGASTITGGAGDDTILAGSGADTIDAGSGDDSVSGGAGGDTITGGAGDDVIHGG
                     TGTDVLSGGGGTDEFTFNFGDSPASGPSVLLAGGIASGIDQIRDWTSTDLLHFVNNAA
                     ADMAVGTSLNFSETTATDFASAVTSANAHLGAGLYVAVQVGTDVIVFADTNASGTITT
                     ADDAVTLVGKTLADITFANFSGT"
     gene            complement(1275..2036)
                     /locus_tag="VHN39_17235"
     CDS             complement(1275..2036)
                     /locus_tag="VHN39_17235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2818141.1"
                     /translation="MEYLTIQTGGGPISLLGRILTDQPRPSLVAVRGSFPPREQMLDL
                     QTYFHGANVLFVTWPGMAGSFWAENPNVEGLTRGVEQAVEMLLPDAPIVAFGASTGNL
                     VSLGLKLPNICRRVAVEPFFQTRDLWPFIANSRERMKLNPGHELMARFFWEVFGIAED
                     RLENRDYGRLLDGVSVPTDVVVGQAPLLPVRDVESWPSFTSAEDRARLAANPLVTLHE
                     GPPGTGHTHGLVGQSYGQTKRLIHAALLDATRRLG"
     gene            complement(2102..2311)
                     /locus_tag="VHN39_17240"
     CDS             complement(2102..2311)
                     /locus_tag="VHN39_17240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818142.1"
                     /translation="MVEITLSGPDGKTLATASLPPLDHDKAQVPAEVGRKRPPQGWAH
                     GIYSGEVRVHRAGAVALTRRWQETL"
BASE COUNT          402 a          843 c          780 g          370 t
ORIGIN      
        1 ccgacagttc ggttggcgcg gatacggtcc tcggcggcca gggcgctgac ctgatcacct
       61 tcaccggaac cggcaacgcc ttcatcgacg gcaacctcgg caatgactcc atcgtcatca
      121 ccggtggcgc tgcggcgcag gtcatgaagc tgtccggcga agacggtacc gacacgatcg
      181 acgcccacgc cggtctcgga aagtacaata tcgacggtgg ggccggcgac gactcgatcc
      241 tcggtagcat tcacgccgac accctctccg gcagcgacgg caacgacacc atccaggacg
      301 gtggcggcgc caacgtcatc gatggcggca acggcaacga ccagatcacg ctcaccggcc
      361 tccacgatac cgccaacgaa accatcacgg gcggtgcggg taacgacatc atctccgacg
      421 gcgccgaaac cacctccggc gttgacaaga tcgacggcgg cgatggcaac gactcgatca
      481 acttcgccac gtccagcggc gcctcgacga tcacgggcgg cgccggcgac gacaccatcc
      541 tggccggctc gggcgccgac accatcgacg ccggctctgg cgacgacagt gtcagcggcg
      601 gcgcgggcgg tgacaccatc accggcggcg ccggcgacga tgtcatccac ggcggtacgg
      661 gcaccgatgt cctgtccggc ggcggcggca ccgatgagtt caccttcaat ttcggtgact
      721 cgcccgcaag cggcccttcg gttctcctcg ccggtggtat cgcgtctggc atcgatcaga
      781 tcagggattg gacgtcgacc gacctcctgc acttcgtgaa taacgcggcg gcggacatgg
      841 ccgttggcac gagcctcaac ttctcggaga cgactgccac cgacttcgcc agcgcggtta
      901 cgtcggccaa cgcccacctt ggcgcgggcc tctatgtggc ggtccaggtt ggcacggacg
      961 tgatcgtgtt cgccgacacc aatgcctccg gcaccatcac gaccgccgac gatgcggtca
     1021 cgctggtcgg caagacgctg gcggacatca ccttcgcgaa cttcagcggc acctaagcct
     1081 cgattgaggt gaaaaagtct ggggccgccc ttcggggcgg cccttttctt ttgggcggcc
     1141 cctttctttt gggcggaagg cgacgacagg gcctgctggg ccgccggtcg ccggccgatc
     1201 acacagggtt cagcctggct ctacaatccg ccgggcgcgc caacgcttcc cgcccgagct
     1261 gacgcggctg gtcctcagcc aagccgccgg gtggcgtcga gcagcgccgc gtggatcagg
     1321 cgcttcgtct gcccgtaact ctgccccacc aagccatggg tgtgtccggt cccgggcggg
     1381 ccctcgtgaa gcgtgaccaa ggggttcgcc gcgagccttg cccgatcctc ggccgaggtg
     1441 aaggacggcc agctctcgac gtctcgcacc ggcagcaagg gcgcctgacc gaccacgacg
     1501 tccgtcggta cgctgacgcc atccagcagc cgcccatagt cgcgattttc gaggcgatcc
     1561 tcggcgatcc cgaacacctc ccagaagaag cgcgccatca gctcgtggcc gggattgagc
     1621 ttcatgcgct cgcgggaatt ggcgatgaag ggccacaggt cccgggtctg gaaaaagggc
     1681 tctacggcca cgcggcgaca gatgttcggc agcttcaggc ccaggctcac cagattgccg
     1741 gtggaggcgc cgaacgccac gatcggcgcg tccggcaaca gcatctccac ggcctgctca
     1801 accccgcggg tcagcccctc cacgttgggg ttttccgccc agaagctgcc ggccatcccc
     1861 ggccaggtca cgaacagtac gttcgcgccg tgaaagtatg tctgcaggtc gagcatctgc
     1921 tccctgggcg gaaacgagcc gcggaccgcc accagggagg gcctgggctg gtcggtgagg
     1981 atgcgcccga gaagactgat cgggccgccg ccagtctgaa tcgtaagata ttccatcgcg
     2041 gctgtcctag ggcctccggc caagccgtgg caaccgccca tttcgcccgc ccggtcgcgg
     2101 gctaaagggt ctcctgccag cggcgggtca gcgcgacggc gccggcccga tggacccgga
     2161 cctcgccgct gtagatcccg tgcgcccagc cctgcggcgg ccgcttgcgc cccacctcgg
     2221 ccgggacctg cgccttgtcg tggtcgagcg gcggaaggct cgccgtggcc agggtcttgc
     2281 cgtcggggcc gctaagcgtg atctccacca cgtccccgag ttccagcccg atgagccgcg
     2341 cataggcgac gatggccggc gcggctcatc gggctggaac tcggggacgt ggtgg
//
LOCUS       DATAJL010000915         2257 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101721,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000915 DATAJL010000000
VERSION     DATAJL010000915.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101721"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..868)
                     /locus_tag="VHN39_17245"
     CDS             complement(<1..868)
                     /locus_tag="VHN39_17245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HEX2818143.1"
                     /translation="MEKNANYALVGLSSLILFIGLVIFVVWLARISFSHEYDLYDIVF
                     EGPVRGLNQGGEVHFNGIKVGEVTRIALDRTNPARVIARARVTSDVPIRIDSFATLEP
                     QGITGVNYVQITAGTPSKPLLKVAEQAKCKSSGLSECIPILKSQRSALSDLLEGGGTV
                     LTRTIEALDRVNRVLSDQNIKTFSATLSDAQAFSATLRERKEIIGDAQKLIQDLDTAT
                     QHADGIITSTKGLVDGDGKRSIKNIADAAEEAKAAAHDLRGVIDKLQGPTADFANNGL
                     PQITSAVVELQRA"
     gene            complement(868..1716)
                     /locus_tag="VHN39_17250"
     CDS             complement(868..1716)
                     /locus_tag="VHN39_17250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2818144.1"
                     /translation="MTETAPSNVVDEDDLTDDELLDSEGPAVEVHGLTSAFGENIVHE
                     GLDITCERGEVLGVVGGSGAGKSVLLNTIIGLRAPQAGTVRVFGQDIEHASRRRWTAI
                     ERRWGVLFQQGALFSNLTVRENVAAPMFEHTTLSRHEIDDLSDLKIALVGLGAEAGDL
                     KPSELSGGMRKRAGLARALALDPELLFLDEPTAGLDPISAAAFDELIKDLSDSLDLTV
                     FMITHDLDTLYEITDRVAVIADRKVVATAPVRELEHADHPWIREYFLGPRGRAVAAKA
                     KTKTEA"
     gene            complement(1713..1823)
                     /locus_tag="VHN39_17255"
                     /pseudo
     CDS             complement(1713..1823)
                     /locus_tag="VHN39_17255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517776.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1943..>2257)
                     /locus_tag="VHN39_17260"
     CDS             complement(1943..>2257)
                     /locus_tag="VHN39_17260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003170136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2818145.1"
                     /translation="LVFCATLAGLAGGLVVAWSQLGLGPVFFFQQLLDNVGPKHFWVG
                     MSKAPVLALVIAAIGCRQGMEVGGDVESLGRRVTSAVVQAIFATILIDAIFAVIYMKL
                     NI"
BASE COUNT          356 a          720 c          779 g          402 t
ORIGIN      
        1 cggcgcgttg cagttccacg accgccgaag tgatctgcgg caggccgttg ttggcgaagt
       61 cggccgtcgg accttgcagc ttgtcgatca cgccgcgcag gtcgtgggcc gcggccttcg
      121 cctcctccgc cgcgtcggcg atgttcttga tgctgcgttt gccgtcgccg tcgacgagcc
      181 ccttggtcga ggtgatgatg ccgtcggcgt gctgggtggc ggtgtccagg tcctggatga
      241 gcttctgggc gtcgccgatg atttccttgc gttcccgcaa ggtcgccgag aacgcctggg
      301 cgtcggacag cgtcgccgag aaggtcttga tgttctggtc ggagagcacg cggttgaccc
      361 ggtccagggc ctcgatggtg cgggtcagca ccgtgccgcc gccttccagc aggtccgaca
      421 gcgcgcttcg ctggctcttc aggatgggga tgcattcgct gaggccactg gatttgcact
      481 tggcctgctc ggcgaccttc agcagcggct tggacggcgt gccggcggtg atctggacgt
      541 agtttacgcc cgtgatgccc tggggctcca gagtcgcgaa gctgtcgatg cggatcggga
      601 cgtcggaggt cacccgggca cgggcgatca cccgggcggg gttggtgcgg tcgagcgcga
      661 tgcgggtcac ctcgcccacc ttgatgccgt tgaagtgcac ctcgccgccc tggttcaggc
      721 cgcggaccgg cccctcgaag acaatgtcgt agaggtcgta ctcgtgggag aacgagatcc
      781 gggccagcca gacgacgaag atcaccaggc cgatgaacag gatcagcgag gagaggccca
      841 ccagggcgta gttggcgttc ttttccatca ggcctccgtc ttggtcttcg ccttggccgc
      901 gacagctctg ccgcgcgggc ccaggaaata ttcgcggatc caggggtgat ccgcatgctc
      961 gagttcacgc accggggcgg tggcgaccac cttccggtcg gcaatcaccg ctacgcgatc
     1021 ggtgatttca tacagggtgt cgaggtcgtg ggtgatcatg aacaccgtca ggtcgaggct
     1081 gtcggagagg tccttgatca gctcgtcgaa ggctgcggcg ctgatcggat cgagacccgc
     1141 ggtgggctcg tcgaggaaca ggagttccgg gtccagcgcc agggcccgcg ccaggcccgc
     1201 gcgcttgcgc atgccgccgg agagctccga gggcttcagg tcgccggcct cggcgcccag
     1261 gcccacgagc gcgatcttca ggtccgacag gtcatcgatt tcgtggcggg agagcgtggt
     1321 gtgttcgaac atcggggccg ccacgttctc gcgcactgtc aggttcgaaa agagggcgcc
     1381 ctgctggaac agcacgcccc agcgccgctc gatcgccgtc cagcgccggc gcgaggcatg
     1441 ctcgatgtcc tggccgaaca cccgcaccgt gccggcctgg ggcgcgcgca ggccgatgat
     1501 ggtgttgagc agcaccgact tgccggcgcc cgagccgccg acgacgccca gcacctcgcc
     1561 gcgctcgcag gtgatgtcga ggccctcgtg cacgatgttc tcgccgaagg ccgacgtcag
     1621 gccgtgcacc tccacagccg ggccctcaga gtcgagcagc tcgtcgtcgg taaggtcgtc
     1681 ttcgtcgacg acgttggagg gggcggtctc ggtcatatgt tcagcttcat gaacatgagc
     1741 gcgaaggccg cgtcgatcat gatgatcgca aagatggcgt ggaccacggc cgccgtcaca
     1801 cgccgaccga gcgattccac gtcgccgcgc tggatagtca ggttgagccc atcgtggatg
     1861 atgttgtcgc cgaacgctga gcgcaggttc ttcacctcga tcggcggggc gttttcatcg
     1921 agctggtcgt cttggcgcgc catcagatgt tcagcttcat gtagatgacg gcgaagatcg
     1981 catcgatcag gatggtggcg aagatcgcct gcaccactgc cgaggtgacc cgccggccaa
     2041 ggctctccac gtcaccgccg acttccattc cctgccggca gccgatagcg gcgatgacca
     2101 gcgccagcac cggggccttg gacatgccga cccagaagtg cttgggaccg acgttgtcga
     2161 gtagctgctg gaagaagaac accggcccca ggccgagctg gctccaggcc accaccagcc
     2221 cgccggccag gccggcgagc gtggcgcaga ataccag
//
LOCUS       DATAJL010000916         2943 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101780,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000916 DATAJL010000000
VERSION     DATAJL010000916.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2943)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2943)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101780"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(37..771)
                     /gene="flgH"
                     /locus_tag="VHN39_17265"
     CDS             complement(37..771)
                     /gene="flgH"
                     /locus_tag="VHN39_17265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009427 - bacterial-type flagellum basal
                     body, distal rod, L ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEX2818146.1"
                     /translation="MRTRFAAVAALLVLAPLGACSTIKEAVRGPELAPVGYPAQLAPM
                     DQKILAQVNAPAPPTANSLWRTGARTFFNDQRAGKVGDILTVLINIDDSAKTTNATSS
                     SRTSGVTAGIPHLLGLESSLGKILPGGFDPANALSTNSKTTNDGAGAVNRAEKISLTV
                     AAVVSAVLPNGNLVIQGTQEVRTNAEVRQLTVAGIVRPEDISSTNTIQHTQIAEARIN
                     YGGRGDISRVQKTPAGQSLIERFSPF"
     gene            complement(786..1529)
                     /gene="flgA"
                     /locus_tag="VHN39_17270"
     CDS             complement(786..1529)
                     /gene="flgA"
                     /locus_tag="VHN39_17270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HEX2818147.1"
                     /translation="MRLAATLFAALLVAGPALAGQAVSLKSDVASADGVVTLGDLFDG
                     AGAAGRTPVATRSGGSVVLDATAVQTAARRAGLDWANAEGLHKIIVRGGTPSASAAAS
                     AAHGNIEVLTYTRSLSAGEIVQPTDLAWIKAAAAPSDAPSDAETVIGQAAKRPLRAGA
                     VVLAHDTGSAQVIKPGDIVSVTYEAEGVLLRLEGKSMGAAGVGETLAVQNTLSKKVVQ
                     TIVTGQGEAVVGPAADQMKSTRSLRYAVR"
     gene            complement(1533..2321)
                     /gene="flgG"
                     /locus_tag="VHN39_17275"
     CDS             complement(1533..2321)
                     /gene="flgG"
                     /locus_tag="VHN39_17275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEX2818148.1"
                     /translation="MQALRTAATGMAAQQMNVEVISNNIANMNTVGYKKQRAEFQDLL
                     YQTVQQAGAQSSDQGTIVPTGIQIGAGVKTGSVYRIGTQGAMTATSNQYDLAINGRGF
                     FQVLTPTGDTAYTRAGNFSVNDQGQLVTQDGYQVQPAISIPQDAANVTISQSGQVQVT
                     QPGATAPSVVGQLELASFMNEGGLSAQGGNLLLQTGASGAPITGTPGQAGFGVLLQGY
                     TEASNVDPVTEITALIVAQRAYEMNSKVISTADNMLGVANQVKS"
     gene            complement(2336..>2943)
                     /locus_tag="VHN39_17280"
     CDS             complement(2336..>2943)
                     /locus_tag="VHN39_17280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HEX2818149.1"
                     /translation="VSAEVAVAGEAVASLGSDLEEALALDGHVQRRTDATLDMAIEGQ
                     GFFKVTTKAGDRFTRDGHFRTDDTGRVTTQAGAVVADEGGGEITIDPAKPGEVSISAD
                     GVISQGAERIGKVGVFKFDSLSALEKTGDNLYQNASNQQPSAATDVKVRQGMLESSNV
                     NPIVQITKMIEVNRAYEAVSQMITAESTLSRDSVARLGKAN"
BASE COUNT          405 a          917 c         1093 g          528 t
ORIGIN      
        1 gcggtttcgg gccgccggcg cagcttacgg cgccacctag aacggcgaga agcgctcgat
       61 cagggactgg ccggccgggg tcttctggac gcggctgatg tcgccgcgac cgccgtagtt
      121 gatgcgggcc tcggcgatct gggtgtgctg gatggtgttg gtggaggaga tgtcttccgg
      181 ccgaacgatg ccggcgacgg tcagctggcg cacctcggcg ttggtgcgca cctcctgggt
      241 cccctggatc accaggttgc cgttgggcag aaccgcggag accacggcgg cgacggtcag
      301 gctgatcttc tccgcccggt tcaccgcgcc cgcgccgtca ttggtggtct tggagttggt
      361 cgagagcgcg ttggccggat caaagccgcc cggcaggatt ttcccaaggc tcgattccag
      421 gcccagcagg tgcggaatgc cggcggtgac gccgctggtc cgcgagctgg acgtcgcatt
      481 ggtggtcttg gcgctgtcgt cgatgttgat caggacggtc aggatgtcgc ccaccttgcc
      541 ggcgcgctgg tcgttgaaga aggtccgggc gccggtgcgc cacagggagt tggcggtggg
      601 cggggcaggc gcgttgacct gggccaggat cttctggtcc atcggcgcga gctgggcggg
      661 atagcccaca ggagcgagct cggggccgcg gacggcctcc ttgatggtgg agcaggcgcc
      721 caagggagcc aggaccagca gggcggcgac ggcggcgaaa cgggtacgca tgcgaggtct
      781 tcctcttatc gaacggcgta gcggagcgag cgggtggatt tcatctggtc ggcggcggga
      841 ccgaccacgg cctcgccctg accggtgacg atggtctgga cgaccttctt ggagagcgtg
      901 ttctgcacgg cgagcgtctc gccgacgccg gcggcgccca tggacttgcc ttcaaggcga
      961 agcaagacgc cctcggcctc ataggtgacg ctgacgatgt cgccgggctt gatcacctgg
     1021 gccgagccgg tgtcgtgcgc cagcaccacc gcgccggcgc gcagcggccg cttggccgcc
     1081 tggccgatta ccgtctcggc gtccgagggc gcatcgctgg gggccgcggc ggccttgatc
     1141 caggccaggt ccgtgggctg aacgatctcg ccggccgaga gactgcgggt ataggtcagg
     1201 acctcgatgt tgccgtgggc ggcggacgcg gcagcggatg cggacggggt tccgccgcgg
     1261 acaatgatct tgtgcaggcc ttcggcattg gcccagtcga ggccggcccg gcgagcggct
     1321 gtctgcacgg cggtggcgtc cagcaccacg ctgccccccg accgcgtcgc taccggcgtc
     1381 cgccccgcgg cgcccgcgcc atcgaagagg tcgcccaggg tgacgacgcc gtccgcactg
     1441 gcgacatcgg acttcaggct cacggcctgg ccggcgaggg ccgggcccgc gacgaggagc
     1501 gcggcaaaga gggtggctgc gagtcgcatg gcttacgact tcacctggtt ggcgacgccc
     1561 agcatgttgt cggcggtgga gatcaccttg gaattcatct cataggcgcg ctgggcgacg
     1621 atcagggcgg tgatctcggt caccggatcg acgttggagg cctcggtgta gccctgcagc
     1681 aggactccga agccggcctg gccgggggtt ccggtgatcg gcgcgccgga ggcgccggtc
     1741 tgcagcagca ggttcccgcc ctgagccgag aggccgcctt cgttcatgaa gctggcgagt
     1801 tcgagctggc ccacgaccga cggcgccgtg gcgcccggct gagtgacctg cacctggccg
     1861 gactgggaga tggtgacgtt ggcggcgtcc tgcgggatcg agatcgccgg ctgcacctgg
     1921 tagccgtcct gggttaccag ctggccctgg tcgttgaccg agaagttgcc ggcccgggta
     1981 taggcggtgt cgccggtggg ggtcaggacc tggaagaagc cgcggccgtt gatcgccagg
     2041 tcgtattggt tgctggtggc ggtcatcgcc ccttgcgtgc cgatccggta gaccgaaccc
     2101 gtcttcacgc cggcgccgat ctggatcccc gtggggacga tggtgccctg gtctgaggac
     2161 tgggcgccgg cctgctggac ggtctggtag agcaggtcct ggaactcggc gcgctgcttt
     2221 ttgtagccga cggtgttcat gttcgcgatg ttgttcgaga tgacctcgac gttcatctgc
     2281 tgcgcggcca tcccggtcgc ggcggtccga agagcttgca tggctcagat cctcactagt
     2341 tcgctttgcc gaggcgcgcg acggagtcgc gcgacagagt ggattcggcg gtgatcattt
     2401 gggagacggc ttcgtaggcc cggttgacct cgatcatctt ggtgatctgc acgatcgggt
     2461 tgacgttgga gctttccagc atcccctggc ggaccttgac gtcggtggcc gcgctcggct
     2521 gctggttcga cgcgttctgg tagaggttgt cgccggtctt ctcgagggcg gacaggctgt
     2581 cgaacttgaa gaccccgacc ttgccgatgc gctccgcgcc ctggctgata acgccgtcgg
     2641 cggagatcga gacctcgccg ggcttggccg gatcaatggt gatctctccg ccgccctcat
     2701 cggcgaccac ggcgccggcc tgggtggtca cccggccggt gtcgtcagtg cggaagtggc
     2761 cgtcgcgggt gaagcggtcg ccagccttgg tagtgacctt gaagaagccc tggccctcga
     2821 tggccatgtc cagcgtcgcg tccgtgcggc gctggacatg gccatcgagg gccagggctt
     2881 cttcaaggtc actaccaagg ctggcgaccg cttcacccgc gacggccact tccgcactga
     2941 cga
//
LOCUS       DATAJL010000917         2519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_110912,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000917 DATAJL010000000
VERSION     DATAJL010000917.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_110912"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2342
                     /locus_tag="VHN39_17285"
     CDS             <1..2342
                     /locus_tag="VHN39_17285"
                     /inference="COORDINATES: protein motif:HMM:TIGR03797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015440 - ABC-type peptide transporter
                     activity [Evidence IEA];
                     GO_process: GO:0043213 - bacteriocin transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="NHLP bacteriocin export ABC transporter
                     permease/ATPase subunit"
                     /protein_id="HEX2818150.1"
                     /translation="IGRFGGALGGADDGFQLALGGRRKLSTDDWRAVDRFHATALSRL
                     TDRLDQGAQAEAARLGRRTARAADQSARLLDELAQIIVPREAAPAAADVIDDPLFSAC
                     RTVAETLGVEVRRPAARASDREDFRAIGEIARTSRLRVRRTLLRAGWWRRDAGPLVAW
                     IGEARQPLAILPAARGGYVVVDPRSGARRRVDETLAQSISLEAATFYRPLPDGDLPAG
                     RLLRWMAHHSRADIARILLAATALAIIGLTAPVVTALLVDGAIPRSDLGQLAFCAAAL
                     LMAAVGAAGLQAVQGVATLRLSGVADWTLQAAVMDRLLRLPATFFKAYTAGDLADRVL
                     GVAEIRQVLTGRAIGGVLAGVFCLFGVALMFAFEARLALAASILIVIQGGVIVTVSAA
                     RLQHERRYFDLHGKTHGLVLQLLTGIGKLRVAAATTRALAQWVRRFSQQKGHFVASQR
                     IGNRLTAFQAGFPTLASLIVFALAVREPSGIDAGRFLAFFAAFGQSLAAVASLGAAVG
                     EILIAAPFFARLRPVLSSPVETPGLGGSTGEISGAVELSQVMFRYAGNGAMVLEGLSF
                     AVEPGEFVALVGPSGGGKSTIFRLMLGFERALSGAILFDGCTIDMLDIAAVRRQIGVV
                     LQNGKLTSGSIFENICGAVQVPIEQAWEAARHAGLDADIEAMPMGMHTVVNEGVSTLS
                     GGQRQRLMIARALVHRPRLLLFDEATSALDNRTQSIVSSALAKLGVTRIVIAHRLSTV
                     RDADRIFVIAGGAVAQVGTFDVLDKQPGPFADLARRQLV"
BASE COUNT          318 a          857 c          918 g          426 t
ORIGIN      
        1 ggatcggccg gttcggcgga gcgcttggcg gcgcggacga cggattccag ttggctttgg
       61 gggggcggag aaagctgtcg accgacgatt ggcgggcggt cgaccggttc cacgccacgg
      121 ccctttcgcg gctgaccgat cgactggacc agggcgcgca ggccgaggcg gcgcggcttg
      181 gccgcagaac ggcgcgcgcc gccgatcagt ccgcgcgcct gcttgacgag ctcgcgcaga
      241 tcatcgttcc gcgcgaggcg gcgccggccg ccgccgatgt gatcgacgat cccctgttct
      301 ccgcctgccg gacggtcgcc gaaacccttg gggtcgaggt tcgccgcccg gcggcgcgcg
      361 cgtcggaccg cgaggatttc cgggcgatcg gcgagatcgc gcggacctcg cgcctgcgcg
      421 tccggcgcac tctgttgcgg gccggctggt ggcggcgtga cgcggggcct ctggtcgcct
      481 ggattggcga ggcgcgccag ccgttggcga tcttgcccgc cgcgcgaggt gggtacgtgg
      541 tggtcgaccc gcgctccggc gcaaggcgtc gggttgacga gaccctcgcc cagtcgatct
      601 cgctcgaggc ggcgaccttc tatcggccgc tgcccgacgg agacctgccg gctggcagac
      661 tgttgcgctg gatggcgcac cacagccggg cggacatcgc ccgcatcctt ctggcggcga
      721 cggcgctggc gatcatcggg ctgaccgcgc cggtggtcac cgcgctgctg gtcgacggcg
      781 cgatcccccg cagcgatctg ggtcaactgg ccttctgcgc ggcagccctg ctgatggccg
      841 cggtcggcgc ggccgggctc caggcggtgc agggcgtggc gacgctcagg ctttcgggcg
      901 tggcggactg gacgctgcag gccgcggtga tggaccgtct gctgcggctc ccggcgacgt
      961 tcttcaaggc ctacaccgcc ggcgatctgg ccgatcgcgt gctcggcgtg gccgagatac
     1021 gacaagtcct gaccggccgc gcgatcggcg gcgtgctggc gggcgtcttc tgcctgttcg
     1081 gcgtggcgct gatgttcgcc ttcgaggcgc ggctggcgct cgcggccagc atcctgatcg
     1141 ttatccaggg cggggtgatc gtaacggtct ctgctgcgcg cctgcagcat gagcgccgct
     1201 atttcgatct gcatggcaag acccacggcc ttgtgctgca gctgctgacc gggatcggca
     1261 aacttcgggt ggccgcggcg acgacgcggg cgctggcgca atgggtgcgc cgtttctcac
     1321 agcagaaggg acacttcgtc gcctcgcaac ggatcggcaa ccgcctgacc gccttccagg
     1381 cgggctttcc gacgctcgcc agcctgatcg tctttgcgct ggccgtgcgc gagccctccg
     1441 ggatcgacgc tgggcgtttc ctggctttct tcgccgcctt cggtcagtcg ctggcggcgg
     1501 tcgccagcct cggggccgcg gtcggcgaga tcctgatcgc cgcgcctttc ttcgcgcgcc
     1561 tgcgcccggt cctctcctcg ccggtcgaga ccccgggcct gggcggttcc accggggaaa
     1621 tctccggggc ggtcgaactc agccaggtga tgttccgcta tgccggcaac ggcgcgatgg
     1681 tgctggaagg gctctccttc gcggtggagc cgggagaatt cgtcgccctg gtcggcccct
     1741 ccggcggcgg caagtcgacg atcttcaggc tcatgctggg gttcgagaga gcgctgtccg
     1801 gcgccatcct gttcgatggc tgcaccatcg atatgctgga catcgccgcc gtgcgccgac
     1861 agatcggcgt ggtcctgcag aacggcaagc tgacgtccgg cagcatcttc gagaacattt
     1921 gcggcgcggt tcaggtcccg atcgagcagg cctgggaggc ggcgcgccac gcgggcctcg
     1981 acgcagacat cgaggccatg ccgatgggta tgcataccgt cgtcaacgag ggcgtcagca
     2041 cgctctcggg tggccagcgc cagcggctga tgatcgcgcg agccctggtc caccggccgc
     2101 gtctgctgct gttcgacgag gcgaccagcg ccttggacaa ccgcacccaa tcgatcgtca
     2161 gcagcgcgct ggccaagctg ggcgtgaccc gcatcgtgat cgctcaccgc ctcagcaccg
     2221 tgcgcgacgc cgaccgaatc ttcgtcatcg ccgggggcgc cgtcgcccag gtagggacgt
     2281 tcgacgtgct cgacaaacag cccgggccgt tcgccgacct ggcccgccgc caactcgtct
     2341 aggagccctt catgcgcaag gttctctaca tattcggcct gctgaccgac gcggacgtgg
     2401 aatggatggc gcggaccggc acacgacgct gggtggaggc gggcgaggtg ctcatccagg
     2461 agggccggcc ggtcgacgcc gtgatcctgt tgctggacgg cgagctcgcg gtctcggtg
//
LOCUS       DATAJL010000918         4644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75171,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000918 DATAJL010000000
VERSION     DATAJL010000918.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4644
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75171"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1058)
                     /locus_tag="VHN39_17290"
     CDS             complement(<1..1058)
                     /locus_tag="VHN39_17290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEX2818151.1"
                     /translation="MRRVADDPGRLDLVGAPEGCDALVMADIVRARKGLSVFVARDGA
                     RLSAFVDAFRFFAPEVEVLTFPAWDCLPYDRIGPSAGIAAQRMTALSRLSEEVDVKTP
                     RLLVTSVPALVQRVPPQSSVKRASYSAHAGNVVEIADLEAYFAINGYQRASTVSEKGE
                     FAIRGGVIDVFPPSAEEPVRLDLFGDTLESIRAFDPETQRSTRQLHEVSLLPVSEALL
                     DKEAISRFRSGYLETFGAAGDDPLYATVSEGGRRAGMEHWLPLFYPTMATLLDYLPDN
                     AVIALDHLSREARDERLALIKDAYESRAQIERKAQYHPLEPDRLYLTADEWQGLLAKR
                     ATRRFSAFNEAEGDTVID"
     gene            complement(1087..1371)
                     /locus_tag="VHN39_17295"
     CDS             complement(1087..1371)
                     /locus_tag="VHN39_17295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HEX2818152.1"
                     /translation="MDDARLKKLRFRAWRRGFREADLILGPFADKHVSTFSPTELDWF
                     ETMLDVPDQDLYGWIVGTAPTPLEFDTEIMNQIKEFRFEAHAIRGDDRGG"
     gene            1440..3518
                     /gene="recG"
                     /locus_tag="VHN39_17300"
     CDS             1440..3518
                     /gene="recG"
                     /locus_tag="VHN39_17300"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012286940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEX2818153.1"
                     /translation="MRPEILFPLFAPITSLKGVGPRVAPLLEKLAGPIVRDVAFLKPH
                     SLVRRTPATVSSAIDGQVMTFEVTIASIDKPRGPSQPWRVRTFDQTGFLSLVFFGSFG
                     SSLEHRHPPNTLRVVSGRVEQFRDEWQMVHPDYMLAPEKAVEIPDIEAVYPATQGLPP
                     RTVRKFALEALERAPELPEWQDPAWLARERFPTWRDALARLHSPETDTELSPLSPHHR
                     RLAYDELLAQQLAMAQRKAERRKEPAARIAASDTAAKIRADLPFAFTDAQDRALSEIR
                     ADLAAGERMSRLIQGDVGSGKTVVAMCAMADVAAGGGQSALMAPTEILARQHYETISG
                     PLTAHGVGVILLTGRDKGAPRAEKLRALASGAAKVAVGTHALFQDDVAFHQLQLAVVD
                     EQHRFGVSERQRLQTKGDAVHLLAMSATPIPRTLELTLYGDLDVSRIDEKPPGRTPVA
                     TRAAPMTRIAEVEARLREAVKGGAQAFWICPLVSESELIDLKAAETRAAELKQTIGPS
                     VGLIHGKLTPAAKDAVMAEFADGTLSVLVATTVVEVGVNVPNATIMVIEQAERFGLAQ
                     LHQLRGRVGRGRQESSCVLLYDPPLSETAQKRLDILRRTDDGFLIAETDLELRGGGDA
                     LGLKQSGFPDYVFADVLGPHRDLIAAAGDDARLIVNRDPELKSERGKALQVLQELFDW
                     KAGLGLRDAG"
     gene            complement(3522..3854)
                     /locus_tag="VHN39_17305"
     CDS             complement(3522..3854)
                     /locus_tag="VHN39_17305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818154.1"
                     /translation="MSEAQAIEADVRALQAEFESGEDTGDLIERLNARIAAFLAAGDT
                     IVWIEAEFEALVRLFLEGGDEVVSLDPDPEVDLGWYGRYEVRACPREGLWVYRKGRFG
                     HVSGHIVT"
     gene            complement(3935..>4644)
                     /locus_tag="VHN39_17310"
     CDS             complement(3935..>4644)
                     /locus_tag="VHN39_17310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX2818155.1"
                     /translation="QDYAVLPGKRLEKLPAMEPMTHLMSVFGIAGLTAYFGLLECGKP
                     KAGETVVVSAAAGSVGSIVGQIAKIKGCKVVGVAGGAEKGRWLVEELGFDAALDYKAG
                     GLRQQMKEAVPEGIDVYFDNTGGEIFETCLFAMKNFGRIVCCGAVSQYDGAAPPHGPR
                     GIPGLIVTKRLTLQGFVVMDFDDQREAALKELQGWVASGQLKVQEDIIDGLENTPAAL
                     IGLLNGENRGKRMVKVR"
BASE COUNT          765 a         1606 c         1529 g          744 t
ORIGIN      
        1 atgtcgatga ccgtgtcgcc ctcggcctcg ttgaaggccg agaaccgccg cgtggcgcgt
       61 ttggccagca ggccctgcca ttcgtcggcg gtcaggtaga gcctgtccgg ctcaagggga
      121 tggtactgcg ccttgcgctc gatctgggcg cggctctcgt aggcgtcctt gatcagcgcc
      181 agccgctcgt cgcgcgcctc gcgggacagg tgatcgagcg ctatcacggc gttgtccggc
      241 aggtagtcga gcagggtcgc catggtcgga taaaacagcg gcagccagtg ctccatgccg
      301 gcgcggcggc cgccctcgga gaccgtggcg tagagcgggt cgtcgccggc cgcgccgaag
      361 gtctccagat agccggatcg gaagcgcgag atcgcctcct tgtcgagcag ggcctcgctg
      421 accggcagca gactcacctc gtgcaattgc ctggtggacc gctgggtctc gggatcgaag
      481 gcgcggatgg attccagggt gtcgccaaag aggtcgagcc tgactggctc ctccgccgag
      541 ggcgggaaga cgtcgatcac cccgccgcga atggcgaact cgcccttctc cgagacggtg
      601 gaagcgcgct ggtagccgtt gatcgcgaaa taggcctcga gatcggcgat ctcgaccaca
      661 ttgccggcgt gggccgaata gcttgcccgc ttgaccgagc tttgcggcgg cacgcgctga
      721 accagcgccg ggaccgaggt gaccagcagg cgcggggtct tcacgtcgac ctcttcgctc
      781 agccgcgaga gcgccgtcat ccgttgggcg gcgatgcccg cggaggggcc gatccggtcg
      841 tacggcaggc aatcccacgc agggaaagtc aggacctcca cctccggcgc gaagaaccgg
      901 aaggcgtcca cgaaagccga gagccgcgcc ccgtcgcggg ccacgaatac cgacaggcct
      961 ttgcgcgccc gcacgatgtc ggccatgacc aaggcgtcgc agccctccgg cgcgccgacc
     1021 agatcgagcc ggccgggatc gtcggccacg cgtcgcatct cggccgcgct gatcggacgc
     1081 gagccgtcag ccgccacggt cgtcacctcg aatagcatga gcttcgaagc ggaactcttt
     1141 gatctgattc atgatctcgg tatcgaattc gagcggcgtc ggcgccgtgc cgacgatcca
     1201 gccatagagg tcctgatcgg ggacatcgag catggtctcg aaccaatcca gctcagtcgg
     1261 agagaacgtc gagacgtgct tgtccgcaaa cggccccaga atgaggtccg cttccctgaa
     1321 gccccggcgc caggcccgga acctcagctt cttcagccgg gcgtcgtcca tgtcagtcat
     1381 caagaggtgg cggatataga gcgcgcggcg ggtcagcgcc agtcagctat gatcgaagaa
     1441 tgcggcctga gattctgttt ccgctctttg cgcccatcac ctcgctgaag ggggtgggtc
     1501 cgcgcgtggc gccgctgctg gaaaagctgg cgggtcccat cgtgcgagac gtggcgttcc
     1561 tgaagccgca ttcgctggtc cgtcggaccc ctgcgaccgt ttccagcgcc atcgatggtc
     1621 aggtcatgac gttcgaggtg acaatcgcgt ccatcgacaa gccgcgcggg ccctcacagc
     1681 cctggcgcgt gcggaccttt gaccagacag gtttcctcag cctggtgttc ttcggcagct
     1741 tcgggtcgag cctggaacac cgccacccgc ccaacaccct tcgggtggtt tccggcaggg
     1801 tcgagcagtt ccgtgatgaa tggcagatgg tccacccgga ctacatgctg gccccagaaa
     1861 aggcggtcga gattccggat atcgaagccg tctatccggc aacccagggc ctaccgcctc
     1921 gtactgtgcg caaattcgcg ctggaagcgc tggagcgggc gccggaattg ccggaatggc
     1981 aggaccccgc gtggctggcc cgggagcgtt tcccgacgtg gcgcgatgcc ctggcgcgcc
     2041 tgcacagccc agagaccgac accgaactct cgccgctcag cccccaccat cgccgcctgg
     2101 cctatgacga gctgctggcc cagcaactgg ccatggccca gcgcaaggcc gagcggcgca
     2161 aggagccggc agccaggatc gccgccagcg acacggcggc caagattcgc gccgacctcc
     2221 ccttcgcctt cacggacgcc caggatcgcg cgttgagcga aatccgcgcc gaccttgccg
     2281 ccggcgagcg gatgagccgg ctgatccagg gcgacgtggg ctctggcaag accgtggtgg
     2341 ccatgtgcgc catggccgat gtggcggcgg gcggcggcca gagcgccctg atggcgccca
     2401 ccgaaatcct ggcgcggcag cactacgaga ccatctccgg gcccctcacc gcccacggtg
     2461 tcggcgtgat cctgctgacc ggccgcgaca agggcgcgcc acgcgccgaa aagcttcggg
     2521 cattggcttc cggcgcggcg aaggtggcgg tgggcaccca cgccctcttc caggacgatg
     2581 tggccttcca tcagctccag ctcgccgtgg tcgacgaaca gcaccgcttc ggcgtcagcg
     2641 aacgccagcg gctgcagacc aagggcgacg cggtccatct gctcgccatg tccgccaccc
     2701 cgatcccgcg cacccttgag ctcacgcttt acggcgacct cgacgtctcg cgcatcgacg
     2761 agaagccgcc cggccgcacc ccggtcgcta cccgcgccgc gcccatgact cgcatcgccg
     2821 aggtcgaggc ccgcctgcgc gaggcggtga agggcggcgc ccaggccttc tggatctgcc
     2881 ccctggtctc ggaatccgaa ctcatcgacc tgaaggccgc cgaaacccgc gccgcggagc
     2941 tgaagcaaac cattggtccg agcgtcggcc tgatccacgg caagctgacg ccggccgcca
     3001 aggacgcggt gatggccgag ttcgccgacg gcacgctctc ggtgctggtc gccaccacgg
     3061 tggtcgaggt gggcgtcaat gtgcccaacg ccacgatcat ggtcatcgaa caggccgaac
     3121 ggttcggtct ggcccagctc caccagttgc gtggccgggt cggccggggg cggcaggaga
     3181 gctcctgcgt tctgctctac gacccgccgc tgtcggagac cgcccagaag cggctcgata
     3241 tcctcaggcg caccgacgac ggcttcctga tcgccgagac cgacctggag ctgcgcggcg
     3301 gcggcgatgc gctgggcctc aagcagtccg gcttcccgga ctacgttttc gccgacgttc
     3361 tcggccccca ccgcgacctg atcgccgccg ccggagacga cgcgcgcctg atcgtgaacc
     3421 gcgaccctga gctgaagtcc gaacgcggca aggcgttgca agtcttgcag gaactgttcg
     3481 actggaaagc cggcctcggt ctgcgcgacg ccggctgagc ctcaggtgac gatatggccg
     3541 ctgacgtggc cgaagcgtcc cttgcggtag acccacaggc cctctctcgg acaggcgcgc
     3601 acttcgtagc gtccgtacca gccgagatcg acctcgggat cggggtcaag cgagaccacc
     3661 tcgtcgccac cctccaggaa cagacgcacc agggcctcga actcggcctc gatccacacg
     3721 atggtgtcgc cggcagcgag aaacgcggcg atacgtgcgt tcagccgctc gatcaggtcg
     3781 ccggtgtctt cgccggactc gaactcggcc tgcagggcgc ggacgtcggc ttcgatagct
     3841 tgagcttcgc tcatctgacg cctctttctc ggcgtggacg atatcggcgg cgcgtttcat
     3901 gtcgccaccg gtgcgaagcc taagtccggg gcggttaacg caccttgacc atgcgcttgc
     3961 cgcggttctc gccgttcagg aggccgatca gggcggccgg cgtgttctcc aggccgtcga
     4021 tgatgtcctc ctggaccttg agctggcccg aggcgaccca gccttgcagc tccttcaaag
     4081 ccgcctctcg ttggtcgtcg aagtccatga ccacgaagcc ctgcagggtc aggcgcttgg
     4141 tgacgatcag gcccgggatg ccgcgggggc cgtgcggggg cgcggcgcca tcgtactgcg
     4201 agaccgcccc gcagcagacg atgcggccga aattcttcat ggcgaaaagg caggtctcga
     4261 agatctcgcc gccggtgttg tcgaaataga cgtcgatgcc ctcggggacg gcctccttca
     4321 tctgttggcg caggccgccg gccttgtagt cgagcgccgc gtcgaacccg agttcctcca
     4381 caagccagcg ccccttctcg gcgccgccgg ccacgcccac caccttgcag cccttgatct
     4441 tggcgatctg gccgacgatc gagcccaccg atccggccgc cgcggagacc acgacggtct
     4501 ctcccgcctt gggcttgccg cactccagca ggccgaaata ggcggtgagg ccggcgatgc
     4561 caaagacgct catcaggtgg gtcatcggct ccatggcagg caatttttcc agccgcttgc
     4621 cggggagaac cgcgtagtcc tgcc
//
LOCUS       DATAJL010000919         8200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75205,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000919 DATAJL010000000
VERSION     DATAJL010000919.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8200
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75205"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(18..413)
                     /locus_tag="VHN39_17315"
     CDS             complement(18..413)
                     /locus_tag="VHN39_17315"
                     /inference="COORDINATES: protein motif:HMM:NF012272.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005344 - oxygen carrier activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="globin"
                     /protein_id="HEX2818156.1"
                     /translation="MNSGEIVAASLEALAERAGDPARQVYARLFAEHPDMQALFVRDT
                     TGAVRGEMLAMAFECLLDIGGTGAYAANLIAAERVNHQGVGVPPEAFGRFFPILAQTC
                     RELLGEAWTPQVDAAWAELLGRIAVLTPI"
     gene            486..1304
                     /locus_tag="VHN39_17320"
     CDS             486..1304
                     /locus_tag="VHN39_17320"
                     /inference="COORDINATES: protein motif:HMM:NF012596.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2818157.1"
                     /translation="MTFHDISYAVQDDVGVITLNRPAYRNAQSYRMLDEIDEAFELAR
                     ADEAVRVVVVRGSGGVFSTGHDLGTEEGMAYRKALGAKPGIQTYDQFKKYNLDLLLKW
                     RNFSKPTVAMVEGYCIYAGWMLAAAMDVVFASDDAEFLAGMVEYMSIPWDIGIRRAKE
                     LVFESRFISAAEAAQYGLVNRVLPKADLERETFAWARRVAQNSPEVLRMAKVQMNKAQ
                     DAQGFSQAVEDSLGDYCAMMWTPGVDLRLEGENRLLAVDLAVRGKRGTRAAASV"
     gene            complement(1314..1793)
                     /locus_tag="VHN39_17325"
     CDS             complement(1314..1793)
                     /locus_tag="VHN39_17325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEX2818158.1"
                     /translation="MTASAHDYSFNTIDGAPLPLTTFKDKVVLVVNTASACGLTPQYD
                     GLEKLYSDYKDRGLVVLGVPCNQFAGQEPGTEAEIKAFCETRFNVDFPLTAKAEVKGE
                     GAHPFYKWAQDVLGEPAVPVWNFHKILIGKGGEAIQAFGPRTEPEAQEITAAIEKAL"
     gene            2063..4960
                     /locus_tag="VHN39_17330"
     CDS             2063..4960
                     /locus_tag="VHN39_17330"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2818159.1"
                     /translation="MRFKHQLMLSGALVVGAFAAGAHAQSRPTTAAAATQNTISELVV
                     TAEKREQNLQDVPIAISAFTAKQRDIVGIQSIQDMTNFTPGLQYSTSTDRVSLRGLGR
                     LTNVLSADASVANYADGVYETFAVRAGASTLFTDRVEVLRGPQGTLYGRNSIAGALNI
                     ISKRPTEDWYAEARVGYANYQHSNVEFAVSGPIGTSGWKFRLAAQWEDQEQGWIKNTV
                     PNKASEGNVLNTNYIEAQIEGKFGDHIDMWSKLGYTTWKNGAGGPGSQSGGWTPNIYS
                     ADPAHPNQVLPNISATNPNGGNGFNIIEFPQASTNINAGFGCSGLATNVISANGPGLA
                     GCINASNSSPWLKNTPISYQVRLPNAYTVASHWTYHAPDFDVKYIVGGVHYYYDLRGS
                     VPNGSADSPITQFTAGATTFYPQESFDYQEHNGFISHELNLVSTTDKPLQWIVGAYYF
                     DQNYTQPVYTSEEPAQTQWSSVPPFGVCLSGAAPTAVSVACPAGIGRRFDNRPAVEDI
                     SYATYGQLTYKYDPTLTFTGGLRYSHDEKRGTESVRLLCFGLPACLSGLPPEIFAAPL
                     DLTGVTTVVAGGTGAGIDVLPKGVTGPTTYDPATGFATRHYDASWSAVTGTAKVEWQP
                     DDNTNMYGSYSRGYRSGGFNIGIFTVLSFLPYSNKETVDAFEVGFKKNWPGNLQTNVA
                     VYHYDYDNLQIPVTELQGGTGAVAIAQSTTSFYNVPKSRSQGIEIETIWQPIQDLQLI
                     FNYSLIDATIIRGQAIDIVDPTATQPGAKPVHTLAQCQAGGAAVAGDCAVDDPTNGLA
                     GGGFQRLQNLSGNELPNAPRNKIAVAGNYTWHFEAGSLTGSLSYSWRDKAYGTLFTRW
                     YTEAPTWDQWDARALWNSKDNKYEVIAYVKNIFDKIGYDQGAIGTRLNGAFSNVYGPN
                     PAGLTCSPIVTGSGNLAAGQLGTVNCVQGIQKTYYTTPPRTFGVELRYKFF"
     gene            complement(5025..5948)
                     /locus_tag="VHN39_17335"
     CDS             complement(5025..5948)
                     /locus_tag="VHN39_17335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX2818160.1"
                     /translation="MAETLRGGVIGAGVFGGYHANQYARLPGVVLSAVLDTHPERAAA
                     VAMPLGGRGFTDMAEFLDAVDVVTVASPATFHAEHALAALAAGKSVYIEKPIATSVAD
                     GEKVRAAAAAKGLIVACGHQERVSFQAMGLLDIPEQPLLLEALRHGPPSDRSRDVSAV
                     LDLMIHDIDLALAICAADPVTAEGEGRLSDDGVWDVARAEVSFEDGFTAIFDVSRQAP
                     ARHRVMRLVYPSGEVEIDFVARTFRNTTPFTLNADFADTPAGKDPLGASVEGFLKAVR
                     GGTPRPIVTAEEAIAALDLALAIEQALGDPA"
     gene            6082..7083
                     /locus_tag="VHN39_17340"
     CDS             6082..7083
                     /locus_tag="VHN39_17340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004620134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX2818161.1"
                     /translation="MPTVREIRLKSRPSGLPTHDNFELASVELAAPGAGEVQVQNLWM
                     TVDPYMRGRMNDVKSYAPPFQLDKAMDGGAIGQVVVSNDPSLKVGDIVQSGFGWREGF
                     NAPAGAVQKLNPGKLPVQAFLGAAGMPGLTAYAGLLKVAALKDGDVVFVSGAAGAVGA
                     MVCQIAKAKGHRVIGSAGGAEKVAYLKSIGVDQVIDYKAEKDLTAALAAAAPDGIDVY
                     FDNVGGAHLEAALNSAKMFARFAICGMISIYNATKPEPGPSNLAQLIGKNIRMEGFIV
                     SHHFGMMPQYIADLSAWVAEGKVSWKETVFEGLDKAPDAFIGLFKGENLGKMLVKLT"
     gene            7156..8055
                     /locus_tag="VHN39_17345"
     CDS             7156..8055
                     /locus_tag="VHN39_17345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CbiG"
                     /protein_id="HEX2818162.1"
                     /translation="MPRLFSAYVIVDWSAASKPTTGADSVWIGVLKRDVRFRLAFEGF
                     NEATRADAEKRLNLILADLKKRSERALVGFDFPLGFPRGFADTLKLKGEPWRAAWDEL
                     GKRVVDKPTNVNNRFNVAAQLNRLLTGEAFPFWGAPPKDVQTTLTATKLRPHGPGDLP
                     EFRHAELVAKGAASIWKTYYNGSVGGQAIMGIPVVRRLKTERRDSARVWPFETGFRAL
                     TEADLTGVDVVLAEVYPSLVKPQGAVGEIKDLMQVRTLAEHFARLDEANKLGEIFGPP
                     KGTAADVVLDAEREEGWILGAGA"
BASE COUNT         1450 a         2865 c         2612 g         1273 t
ORIGIN      
        1 ccccgatctc atcggggtca gatcggggtg agcacggcga tccgccccag aagctccgcc
       61 caggcggcgt ccacctgcgg cgtccacgcc tcgcccagca actcccggca ggtctgcgcc
      121 aggatcggga agaaccggcc gaacgcctcc ggcggcacgc ccacgccctg gtgattgacc
      181 cgctcggcgg cgatcaggtt cgcggcatag gcgccggttc cgccgatatc cagcaggcac
      241 tcgaaggcca tggccagcat ctcgccgcgc accgcgccgg tggtgtcgcg cacgaacagg
      301 gcctgcatat cgggatgttc ggcgaagagg cgcgcgtaga cttggcgagc cgggtcgccc
      361 gcccgttcgg ccagggcctc cagggaggcg gcgacgatct cacctgaatt catcctcacg
      421 cgcccttcgc tgtcgcccac cggcctgcct atagtcggcg caacgagacc aagggagacg
      481 catccgtgac gttccacgac atcagctacg ccgtccagga cgacgtcggc gtcatcacgc
      541 tcaaccgccc ggcctaccgc aacgcccaga gctaccgcat gctcgacgaa atcgacgagg
      601 ccttcgagct cgcccgcgcg gacgaagcgg tgcgggtcgt cgtggtgcgc ggctccggcg
      661 gggtgttctc caccggccac gacctcggca ccgaggaagg gatggcgtac cgcaaggcgc
      721 tcggcgccaa gcccggcatc cagacctacg accagttcaa gaagtacaat ctcgacctgc
      781 tgctcaagtg gcgtaacttc tccaagccga ccgtggccat ggtggagggc tactgcatct
      841 acgccggctg gatgctggcc gcggccatgg acgtggtctt cgccagcgac gacgcggaat
      901 tcctggccgg catggtcgag tacatgtcca tcccctggga catcggcatc cggcgcgcca
      961 aggagctggt gttcgagagc cgcttcatct cggcggccga ggccgcgcag tacggcctgg
     1021 tgaaccgcgt gctgcccaag gccgatctgg aacgcgagac cttcgcctgg gcgcggcggg
     1081 tggcccagaa cagcccggag gtcctgcgaa tggccaaggt gcagatgaac aaggctcagg
     1141 acgcccaggg gttcagccag gccgtggagg attcgctcgg cgactattgc gccatgatgt
     1201 ggacgccggg cgtcgacctg cgcctggagg gcgagaaccg gctgttggcc gtcgacctgg
     1261 cggtgcgcgg caaacgtggg acccgggcgg cggcctccgt ctagaggcct tcgctagagg
     1321 gctttctcga tcgccgcggt gatttcctgg gcttccggtt cggtgcgcgg accgaaggcc
     1381 tggatcgcct cgccgccctt gccgatcagg atcttgtgga aattccagac cggcacagcc
     1441 ggctcgccca ggacgtcctg cgcccacttg tagaacgggt gcgccccctc gcccttcacc
     1501 tcggccttgg cggttagcgg gaagtcgacg ttgaagcggg tctcgcagaa ggccttgatc
     1561 tcggcctccg tccccggctc ctgaccggcg aactggttgc agggcacgcc caggaccacc
     1621 aggcccctgt ccttgtagtc cgagtagagt ttctccagcc cgtcgtactg tggggtcaga
     1681 ccacaggccg acgccgtgtt cacgacgagc accaccttgt ccttgaaggt cgtcagcggc
     1741 agcggcgcgc catcaatggt gttgaacgaa tagtcatggg cgctggcggt catggcgatg
     1801 tctccaaagg ttcgcccgcg acgctagcgc cgatcttcgg cccactccag gccggctctt
     1861 cggaccttgc gcgccgatgc cgcaaatcga ccgccaacga tttcgagtca gaaacatatg
     1921 aaatacaaag cttttgacgg accgatgata tcttaccgct gataacctgg ttttttcagt
     1981 tgacgcccct ccccgaccgt acccagcttc ggaaaaaata agtcgctagc accgctagag
     2041 acatgacggg gaggtcatcg ccatgaggtt caaacatcag ctgatgctga gcggggcatt
     2101 ggtcgtcggc gcattcgccg ccggcgcaca cgctcagtcc cgccctacca cggccgcggc
     2161 tgcgacccag aacaccatct cggaactggt tgtgaccgcc gaaaagcgtg agcaaaacct
     2221 gcaggacgtg ccgatcgcga tctcggcctt caccgccaaa caacgggaca tcgtcggcat
     2281 ccagtccatc caggacatga ccaacttcac gcccggcctg cagtattcga cgtccaccga
     2341 ccgggtgtcg ctacgcggcc tgggccgcct gaccaacgtg ctgtcggccg acgcctcggt
     2401 cgccaactat gcggacggtg tctacgagac cttcgcggtg cgggcgggcg cctcgacgct
     2461 gttcaccgat cgggtggagg tcctgcgggg gccgcagggc accctctacg gacgcaactc
     2521 gatcgccggc gccctcaaca tcatctccaa gcgcccgacc gaggactggt acgccgaggc
     2581 ccgcgtcggc tacgcgaact accagcacag caacgtcgag ttcgccgtgt ccggccccat
     2641 cggcacgtcc ggctggaaat tccgcctcgc cgcccagtgg gaggatcagg aacagggctg
     2701 gatcaagaac acggtcccca acaaggccag cgaaggtaac gtcctcaaca ccaactacat
     2761 cgaagcccag atcgagggga aattcggcga ccacatcgat atgtggtcga agctcggcta
     2821 cacgacctgg aagaacggcg cgggcgggcc gggctcgcaa tccggcggct ggaccccgaa
     2881 catctattcg gctgatccgg cgcacccgaa ccaggtcctg ccgaacatca gcgcgaccaa
     2941 tccgaacggc ggcaacgggt tcaacatcat cgagtttccg caagcctcca ccaacatcaa
     3001 cgccggcttc ggctgcagcg gcctggccac caacgtgatc tccgcgaacg gccccggcct
     3061 ggcgggctgc atcaacgcct cgaactccag cccgtggctg aagaacacgc ctatctccta
     3121 tcaggtccgc ctgcccaacg cctatacggt ggccagccac tggacctatc acgcgcctga
     3181 tttcgacgtg aagtacatcg tcgggggcgt gcactactac tacgacctga ggggctcggt
     3241 gccgaacggg tcggccgact cgcccatcac ccagttcacg gccggggcga cgaccttcta
     3301 tccgcaggaa agcttcgact accaggagca caacggcttc atcagccacg agctcaacct
     3361 cgtctccacc accgacaaac cgctgcagtg gatcgtcggc gcctactatt tcgaccagaa
     3421 ttacacccag cctgtctaca cttcggagga gccggcccag actcagtgga gcagcgtccc
     3481 gccgttcggc gtctgcctga gcggcgccgc cccgaccgcc gtctccgtcg cctgcccggc
     3541 cggcatcggc cgccgtttcg acaaccgccc ggcggtcgag gacatctcct acgcaaccta
     3601 cggccagctc acctacaagt atgatcccac cctgaccttc accggcggcc tgcgctattc
     3661 gcacgatgag aagcgcggca cggagtccgt gcggctgctc tgcttcggcc tgccggcctg
     3721 cctgagcggt cttccgcctg aaatcttcgc cgcgccgctc gacctgaccg gcgtcaccac
     3781 ggtcgtcgcc ggcggcaccg gagccggtat cgacgtgctg ccgaaaggcg tgacgggacc
     3841 aaccacctac gacccggcca ccggcttcgc cacgcgccat tacgacgcca gctggtcggc
     3901 ggtcaccggc accgccaagg tcgaatggca accggacgac aacaccaaca tgtacggcag
     3961 ctacagccgc ggctaccgct ccggcggctt caacatcggc atcttcaccg tgctgagctt
     4021 cctgccctat tccaacaagg agacggtcga cgccttcgaa gtgggtttca agaagaactg
     4081 gccgggcaac ctgcagacca acgtcgcggt ctatcactac gactacgaca acctgcagat
     4141 tccggtcacc gaactccagg gcggcaccgg cgcggtcgcc atcgcgcagt ccacgacgtc
     4201 gttctacaac gtgccgaagt cacgctcgca gggcatcgag atcgaaacga tctggcaacc
     4261 gatccaggac ctgcagctga tcttcaacta ctcgttgatc gacgcgacga tcatcagggg
     4321 ccaggccatc gacatcgtcg atccgacggc gacgcaaccg ggcgccaagc ccgtccacac
     4381 gcttgcgcag tgccaggccg gcggcgcggc ggtggccggc gactgtgcgg tggacgatcc
     4441 gaccaacggc ctggccggcg gtggcttcca gcgcctccag aacctgtccg gcaacgaact
     4501 gccgaacgcg ccgcgcaaca agatcgccgt cgccggcaac tacacttggc acttcgaagc
     4561 gggttcactg accggcagcc tgtcctactc ctggcgggac aaggcctacg gcaccctctt
     4621 cacgcggtgg tacaccgagg cgccgacctg ggaccagtgg gacgcgcgcg ccctctggaa
     4681 ctcgaaggac aacaagtacg aggtcatcgc ctacgtcaaa aacatcttcg acaagatcgg
     4741 ctacgaccag ggcgccatcg gcacccgcct caatggggcg ttctcgaatg tctacggccc
     4801 gaacccggcc ggcctgacct gcagcccgat cgtcaccggc tccggcaacc tcgcggccgg
     4861 ccagctcggc acggtcaact gcgtccaggg tattcagaag acctactaca cgacgccgcc
     4921 gcgcacgttc ggcgtcgagc ttcgctacaa gttcttctag ggaagagcct cggcggatcc
     4981 gggccagccc gggtccgcca attttcgcct tgaagggctg tcccctaagc gggatctccg
     5041 agggcctgct cgatggccag cgcaaggtcg agcgcggcga tcgcttcttc ggccgtcacg
     5101 atgggccgcg gcgtcccgcc ccgcaccgct ttcaggaagc cttcgacgct ggcccccagg
     5161 gggtccttcc cggcgggtgt gtcggcgaag tcggcgttga gcgtgaaggg cgtggtgttg
     5221 cggaaggtcc gcgccacgaa gtcgatttcc acctccccgg aagggtagac cagccgcatg
     5281 acgcggtggc gcgccggcgc ctggcgtgaa acatcgaaga tcgcggtgaa gccgtcctcg
     5341 aagctgacct cggcgcgggc cacgtcccag acgccgtcgt cgcttagccg cccctcgcct
     5401 tccgccgtca ccgggtcggc tgcgcagatg gccagagcca ggtcgatatc gtgaatcatc
     5461 aggtcgagca cggcggagac atcgcggctg cgatccgagg gcgggccgtg acgcagggcc
     5521 tccagcaaca gcggctgctc gggtatgtcc agcagtccca tggcctggaa ggacacgcgc
     5581 tcctggtgac cgcaggccac gatcaggccc ttggccgcgg ccgccgcgcg caccttctcg
     5641 ccgtcggcga cgctcgtggc gatgggcttc tcgatataga cgctcttccc ggccgccaga
     5701 gcggccaggg catgctcggc gtggaaggtt gcgggcgagg ccaccgtgac cacgtccacg
     5761 gcgtccagga actcggccat gtccgtgaag ccgcgtccgc ccagcggcat ggcgacggcc
     5821 gccgcccgct cggggtgggt atcgagcacg gccgaaagca cgacgcccgg cagccgggcg
     5881 tactggttcg cgtgatagcc gccgaacacg cccgccccga tcacgccgcc ccgcaaggtt
     5941 tcagccattg ggggactcac ccatggaaag ctccgaaatg aggttcgccg cctatcaggt
     6001 catggccctc gacgccaccc gtcgggccac gctaaacagt tgtttgaacg ggcccgcacg
     6061 gcccgaagga gctgaagcgc catgccgacc gtccgcgaga tccgcctgaa gagccgcccg
     6121 tcgggcctgc cgacccacga caacttcgaa ctggcgagcg tcgagctggc cgccccgggc
     6181 gcgggtgagg tgcaggtcca gaacctgtgg atgacggtcg atccgtacat gcgtgggcgc
     6241 atgaacgacg tgaagagcta cgccccgccc ttccagctgg acaaggccat ggacggcggc
     6301 gccatcggtc aggtggtggt ctccaacgac ccgtcgctga aggtcggcga catcgtccaa
     6361 tcgggcttcg gctggcgcga aggcttcaat gcgcccgccg gcgcggtcca gaagctcaat
     6421 ccggggaagc ttcccgtcca ggccttcctc ggcgcggccg gcatgccggg gctgaccgcc
     6481 tatgcgggcc tcctgaaggt cgcggccttg aaggacggcg acgtggtgtt cgtctccggc
     6541 gcggccggcg cggtgggcgc catggtctgc cagatcgcca aggccaaggg gcatcgggtg
     6601 atcggctcgg ccggtggggc cgaaaaggtg gcctacctga agtcgatcgg cgtcgaccag
     6661 gtgatcgact acaaggccga gaaggacctg accgcggccc tggccgccgc ggcgcccgac
     6721 ggcatcgacg tctatttcga caacgtcggc ggcgcgcacc tcgaggccgc cctgaactcg
     6781 gcgaagatgt tcgcccgctt cgccatctgc gggatgatct cgatctacaa cgccaccaag
     6841 cccgagcccg gaccctccaa cctcgcccag ctgatcggca agaacatccg catggaaggc
     6901 ttcatcgtct ctcatcattt cgggatgatg ccgcagtaca tcgccgacct ctcggcctgg
     6961 gtcgccgaag gcaaggtgag ctggaaggag accgtcttcg aagggctcga caaggcgccc
     7021 gacgccttca tcggcctctt caagggcgag aacctcggca agatgctggt gaagctcacc
     7081 tagcggcctc aggcgccatt ggcccgtcac atgtgaaggg ctagaaccgc tcgtccatcg
     7141 tccgggagct agcccttgcc gcgcctcttc agcgcctatg taatcgtcga ctggagcgcc
     7201 gcctccaagc ccaccaccgg ggcggactcc gtctggatcg gggtgctgaa gcgcgacgtg
     7261 cgcttccgcc tggccttcga gggcttcaac gaggcgacgc gggccgacgc cgagaagcgc
     7321 ctgaacctga tcctggcgga cctgaagaag cgttccgagc gcgccctggt cggcttcgac
     7381 ttcccgctgg gctttccccg cgggttcgcc gacacgctga agctgaaggg cgagccctgg
     7441 cgcgcggcct gggacgagct cggcaagcgc gtggtcgaca agcccaccaa cgtcaacaac
     7501 cgcttcaatg tggcggccca gctcaaccgc ctgctgaccg gcgaggcctt ccctttctgg
     7561 ggcgcgccgc cgaaggacgt gcagacgacg ctgaccgcca ccaagctcag gccgcacggg
     7621 cccggcgacc tgccggagtt ccgccacgcc gagctggtcg ccaagggcgc ggcctcgatc
     7681 tggaagacct attacaatgg ctccgtcggc ggtcaggcga tcatgggcat tccggtcgtc
     7741 cggcgtctca agaccgaacg tcgcgactcc gccagggtct ggcccttcga gaccggcttc
     7801 cgggcgctga ccgaggccga tctgacgggc gtcgacgtgg tgctggccga ggtctatccg
     7861 tcgctggtga agccgcaggg cgcggtgggc gagatcaagg acctgatgca ggtccgcacg
     7921 ctggccgagc acttcgcccg gctcgatgag gcgaacaagc tgggcgagat cttcggtccg
     7981 ccgaagggca cggccgccga tgtggtcctc gacgccgagc gcgaagaggg ctggatcctg
     8041 ggcgcgggcg cctaggcgga cgcggattgc ctggccgaag ccggcctcgg cgttgcgcgc
     8101 gatcgccgcc gctccgcccg cggctggcgc aggcgttcca ggtagatcgg agcgtagacc
     8161 gcgaccgccc ccagagcgtc ggccaccagg tcgccgacct
//
LOCUS       DATAJL010000920         2834 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101862,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000920 DATAJL010000000
VERSION     DATAJL010000920.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2834)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2834)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2834
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101862"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /locus_tag="VHN39_17350"
     CDS             complement(<1..202)
                     /locus_tag="VHN39_17350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818163.1"
                     /translation="MAALSAGHASAADAADAVSASGGGAQVEELVVTAQKREEKLQDV
                     PMSVNAISGAQLAAKGITQVADL"
     gene            459..1478
                     /locus_tag="VHN39_17355"
     CDS             459..1478
                     /locus_tag="VHN39_17355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX2818164.1"
                     /translation="MSALENRQVWLQSRPNGVPTAGDFAVRSVPIPTPGDGEILVRNT
                     WLSADPAMRGWIADKSTYWPRIEVGDTMRAFSAGEVLESRHPDYAAGDTVMGIFGWQD
                     FAAVDPARVMRKVKEPDLPLSVSLGVLGLNGLTAYFGLLDVCRPKEGETVVVSTAAGA
                     VGSAVGQIAKLKGCRVVGITGGPEKVAQCLDEFGYDAALDYKALSAEGALDAALQAAC
                     PDGIDCYFDNTSGPIHDAVLRNIRLHARIAICGTAAFHSWDPWNEGPRPERHLLVKRA
                     TMQGFLTTDFAARYEEAVSDLVGWIRDGRLRFREHVLEGIESAPASIALLYGGENTGK
                     LVIRL"
     gene            1505..2431
                     /locus_tag="VHN39_17360"
     CDS             1505..2431
                     /locus_tag="VHN39_17360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008261020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-5-aminohexanoate cleavage protein"
                     /protein_id="HEX2818165.1"
                     /translation="MDKVIISCAVTGSIHTPSMSPYLPITPDQIAHDAVAAAEAGAAV
                     LHLHARDPVDGRPTADPAVFMQFLPRIRQATDAVVNITTGGAPTMSMDDRLAAAFAAS
                     PELASLNMGSMNFGLFPALQRYQTFQHAWEPAYLEGSRDLVFRNTFADIEAILERLGR
                     GHGTRFEFECYDLGHLYTLAHFLDRKLVTPPLFVQSIFGVLGGQGADVENLVHAKRIA
                     DKLFGSDYLWSVMATGRHQMPFTTIAALDGANVRVGLEDSLYAGKGRLATSNAEQVRL
                     LRDVLERLSLEIATPAEARAALALKGADNVAF"
     gene            2462..>2834
                     /locus_tag="VHN39_17365"
     CDS             2462..>2834
                     /locus_tag="VHN39_17365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818166.1"
                     /translation="MTDSELTPDPLIPIVRPQPILRAQSMAYVRFSRRDPDAMDRFLR
                     DFGLFPAGEGTARFYRGCGDAPFLVSIEAGPEDAFLGFGVTAATAEDLHVLAAAAERP
                     VTASEAPGGGIRVRLTDPDGLT"
BASE COUNT          429 a         1007 c          933 g          465 t
ORIGIN      
        1 cgaggtcggc gacttgggtg atccccttcg ccgccagctg ggccccgctg atggcgttca
       61 ccgacatcgg cacgtcctgc agcttttcct cacgcttctg ggcggtgacc accagctcct
      121 cgacctgcgc tccgccgccc gatgcggaga ccgcgtcggc ggcgtcggcg gcggacgcgt
      181 ggccggcgct gagggcggcc accgaagtgg tcaggagtaa aagccggaac gcatcaacac
      241 ggcgcatcag agccccccat aacattggtt ttgtcgttgc tgccggtgta ggcgcggacc
      301 tttttggcgt caatactaat ttttacggtc gtacaggttt attcgatttc ccctcggcgg
      361 gaggcggccg aacaagccgg cttgatttat aaactttccg ctcgtaaagg attttgacgg
      421 tcgcggaaaa tcgcggtcgg gacacggaga gcgacaccat gagcgcgctt gaaaaccgtc
      481 aggtctggct gcagtcgcgg cccaacggcg tgccgaccgc gggcgatttc gcggtgcggt
      541 ccgtgccgat ccctacgccc ggcgacgggg agatcctggt gcgcaacacc tggctttccg
      601 ccgacccggc catgcgcggc tggatcgctg acaagagcac ctactggccg cgcatcgagg
      661 tgggcgacac catgcgcgcc ttttcggccg gcgaggtcct ggagtcccgc catccggact
      721 atgcggcggg cgacacggtg atggggatat tcggctggca ggacttcgcg gcggtcgatc
      781 ccgcccgcgt catgcgcaag gtcaaggaac ccgacctgcc gctttcggtg tcgctgggcg
      841 tgctgggact gaacggcctc accgcctact ttggcctgct cgacgtctgc cgcccaaagg
      901 agggtgagac cgtggtggtc tccaccgcgg ccggcgcggt gggctcggcg gtcggccaga
      961 tcgccaagct caagggctgc cgggtggtcg gcatcaccgg cgggccggag aaggtcgccc
     1021 agtgcctcga cgagttcggc tacgacgcgg cgctcgacta caaagcgttg tccgccgaag
     1081 gcgcgctgga cgcggcgctt caggcagcct gcccagacgg catcgactgc tacttcgaca
     1141 acacctccgg cccgatccac gacgcagtgc tgcgcaacat ccgcctgcac gcccgcatcg
     1201 ccatctgcgg cacggccgcc ttccatagct gggacccctg gaacgagggc ccgcggcccg
     1261 agcgccacct gctggtcaag cgcgcgacca tgcagggttt cctgaccacc gacttcgctg
     1321 cgcgctacga ggaggcggtg agcgacctgg tgggctggat ccgcgacggc cggctgcgct
     1381 tccgcgaaca tgtgctcgag ggcattgaga gcgcgccggc gtccatcgcc ctgctttacg
     1441 gcggcgagaa caccggcaag ctggtcatcc ggctctaggc gcggacaggc cgggagccac
     1501 cacgatggac aaggtcatca tcagctgcgc ggtcaccggc tcgatccaca cgccgtcgat
     1561 gagcccgtac ctgcctatca ccccggacca gatcgcccac gacgcggtcg cggccgccga
     1621 ggccggggcg gcggtccttc atctgcatgc ccgcgatccg gtggacggac ggcccactgc
     1681 cgacccggcc gtattcatgc aattcctgcc gcgcatccgc caggctaccg acgcggtggt
     1741 caacatcacc accggcggcg ccccgaccat gtcgatggac gaccgcctgg cggccgcgtt
     1801 cgcggcgtcc ccggagctcg cctcgctgaa catgggctcg atgaacttcg gcctgttccc
     1861 ggccctgcag cgctaccaga cctttcagca cgcctgggaa ccggcctacc tggaaggttc
     1921 gcgcgacttg gtgttccgca acaccttcgc cgacatcgag gcgatcctgg agcggctggg
     1981 gcgcggccac ggcacccgct tcgagttcga gtgctacgat ctcggccacc tctacaccct
     2041 ggcgcacttc cttgaccgca agctggtcac cccgccgctg ttcgtgcagt cgatcttcgg
     2101 cgtgctcggc ggccagggcg ccgacgtcga gaacctggtc cacgccaagc ggatcgccga
     2161 caagctgttc gggtccgact acctctggtc ggtgatggcc acgggccgtc accagatgcc
     2221 cttcaccacc atcgccgccc tcgacggcgc caacgtccgg gtggggctgg aggacagtct
     2281 ctatgccggc aaggggcgcc tcgcgacctc caacgccgag caggtgcgcc tgctgcgcga
     2341 cgtgctggaa cgcctgtcgc ttgagatcgc cacgcctgcc gaggcgcgcg cggccctcgc
     2401 cctgaaaggc gctgacaatg tcgcgttctg accccatcag ccctgtctac aggagactgc
     2461 cgtgaccgac tccgagctga cgccagaccc gctcatccca atcgtgcggc cgcagccgat
     2521 cctgcgggcc cagtccatgg cctatgtccg cttcagccgg cgtgaccccg acgccatgga
     2581 ccgcttcctg cgggacttcg gccttttccc cgcaggcgag gggaccgccc ggttctaccg
     2641 gggctgtggt gacgccccct tcctggtctc gattgaggcc ggcccggagg acgccttcct
     2701 ggggttcggg gtgaccgccg ccacggctga ggacctgcat gtcctggccg ccgccgcaga
     2761 gcgaccggtg accgccagcg aggcgccggg cggcggcatc cgggtgcggc tcaccgatcc
     2821 cgacggcctg acgg
//
LOCUS       DATAJL010000921         5846 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101908,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000921 DATAJL010000000
VERSION     DATAJL010000921.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5846)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5846)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5846
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101908"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VHN39_17370"
     CDS             complement(<1..266)
                     /locus_tag="VHN39_17370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818167.1"
                     /translation="MDNRARADGFWAKSEGHPLRRVIIILLVLAALGGLIWFAVNLAH
                     NAKSAGGPGGPPGAGGPGGGGRGGGIGGFGGGGRRPSTTVGVATA"
     gene            583..2496
                     /locus_tag="VHN39_17375"
     CDS             583..2496
                     /locus_tag="VHN39_17375"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2818168.1"
                     /translation="MKPVLGVAIAAVIAIIASGGSAFAQAVNGENAGGQPAAAAGNAL
                     NPRAAQAAALAKLQAHGEELFNQRCKSCHMPPVEHAPSRSELAAQFPNVIADALKTGK
                     MQAMAAGLSDTDIGAIASWVTGQSPDAKFDLAGEAKNACPVGATFNPAGPSWNGWSPD
                     KQNTRVAASTTINAANTPKLAVKWAFAYQGGRYGQPTIVGNRVFVTSSSGQVYALDKA
                     TGCMAWAYKARGSVRVTVSVGKNPKAASGWAAYFGDMGRNQVAVDANSGKELWSVSID
                     AGPRGILTGAPALWGDTLYVPLSSFEEGVAGLAAYECCKQRGAVAAIDTATGKIKWKS
                     YAIPTAPAPFKKNAAGTQMYGPAGAAIWSSPTIDPKRGVLYVATGDSYTDVEEHYSDA
                     VEAMDLKTGKIKWAHQMTELDHFLVGCPPQRPGVNCPTPNGPDFDFGSSPILKHLKGG
                     KDMLLAGQKSGGVYGLNPDDGKIIWQLRIGKGSALGGVEWGMAADNDNLYVGIADRGM
                     PTLSALRLTDGALIWRHRAPEPAKCSFEGRCGNGYSGPPSLANGVLFGVNQDGHIRAF
                     EAKTGKLLWDYDTAGRHYETVNGVKNQRGGNLDSNGITFAGSMAFLMAGFNGASGSSG
                     PDNVLLAFSVDGK"
     gene            2510..2911
                     /locus_tag="VHN39_17380"
     CDS             2510..2911
                     /locus_tag="VHN39_17380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013269103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HEX2818169.1"
                     /translation="MGYEPKTKATEVDVDAFIAGSPKPADGAAVCALMRKVTGLEARM
                     WGPTIVGFGEREYDLAGGKKGRMLAMGFSPRKPSLVFYIKHATGWDERLARLGKHGTG
                     KGCLYINKLADVDSAVLEEMVTAAWRETVKL"
     gene            complement(2908..3336)
                     /locus_tag="VHN39_17385"
     CDS             complement(2908..3336)
                     /locus_tag="VHN39_17385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2818170.1"
                     /translation="MSENRMPQIEPGSMPRPKGGIVSYMQLSDAAAASDFYQKAFGGE
                     EVTRMLHPDGKRIIHAHLYINGGSLMLNDAFPDQGMPLGAPQAFTLTLMVDDIDTWFQ
                     RAADAGCEVITPVATMFWGDRYGALKDPFGVSWAMNQGAV"
     gene            3416..5368
                     /locus_tag="VHN39_17390"
     CDS             3416..5368
                     /locus_tag="VHN39_17390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEX2818171.1"
                     /translation="MSPDASLTRRGLSRLIAAFTFAGAARARAQATGPYDVLLESNVR
                     VAMRDGVKLATDVYRPARGGKAIPGRFPVVLERTPYGRDVTSFRDITQASPKTPKTRA
                     EVAATYVRQGYVVVFQDCRGRYDSEGQFVKYLSEGADGFDTCRWLAAQAWSDGRIGTM
                     GLSYAAHTQAALACLNPPGLKAMVLDCGGFSNAYQDGIRQGGAFELKQVTWAYNLGLE
                     SPEAQKNPRLMAALKAVDLKAAFAAMPWAPGHTPLSLIPDYEAYVLDQWRHGTFDAYW
                     KQVGIYAEGSYDQFSDAAMVHLSGWYDAYSRSTTDNYVALSKRKTGPVRLIMGPWTHG
                     ARSTTYSGDVEFGPGATLDAMGHADYDAQRLAWFDRHLKGSSQADPDPPVRLFVMGGG
                     SGRKSPEGRLMHGGRWRAESAWPIADAQTAYYALHGGGLLSSSNQSATGEPLTYAFDP
                     SHPVPSIGGTITSGEPLMRGGGYDQREGPSVYGSRQPYRPLAARPDVLVFQTPPLKAD
                     VEVTGAIEANLWVASDGPDTDFTIKLIDVYPPNEDYPEGFALNLTDGILRCRYRDSFE
                     APKMMTPGEWYQIKVTAFPTSNLFKAGHRIRLDISSSNFPHFDVNPNTGAPEGTGLTR
                     RVARNTVFVDSGRPSHVLLPVVPGRA"
     gene            5365..>5846
                     /locus_tag="VHN39_17395"
     CDS             5365..>5846
                     /locus_tag="VHN39_17395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818172.1"
                     /translation="MTRRRGGLGLAAGVLAVLLVAAAPASAQPLEPSAATVLAKVKAA
                     AGGERWDHVATLSAIGEKTSFGLVGPYSAIEDLVTGRFARRCDYGLLANAEGLDALGR
                     WRRDNSGGVHPLDSDEARTVATTETYLARRGYLFPERGEAAFAPEPPATEGAETFDRT
                     V"
BASE COUNT          951 a         2046 c         1986 g          863 t
ORIGIN      
        1 gccgtggcca cgcccacggt ggtcgagggc ctgcgtccgc cgccgccgaa gccgccgatt
       61 ccgccgccgc ggccgcctcc gccggggccg cccgcgccgg gaggtccgcc cggaccaccc
      121 gcactcttgg cgttgtgcgc caggttgacg gcgaaccaga tcaggccgcc cagcgcggcc
      181 agcaccaaaa ggatgatgat gacgcgccga aggggatgcc cctcgctctt cgcccagaag
      241 ccgtcggcgc gcgcgcggtt gtccatcatt cctccgagat cacctgcgga ccggcgctct
      301 tcggcgcaag cttagccaga acgtcgcaca gcaaacgctg ttcccccgct caatcgctga
      361 atggggggcg tttgccaagc ttactggcct cttagtaggg cctgaccgtg acgcgcgtct
      421 tgctgccctg cgtcgtaacc ttccaaccct gcaactgggt gacggcgccg caatgcgcgg
      481 accgggccgc gggggaaatc tgactgaaat ccaagatggg gtatggtggc gtcaacgagc
      541 gccgcgacag ccggcgcctg agggaacatt cggggggcga ctatgaagcc ggtcttgggc
      601 gtggccatcg cggccgtcat tgccatcatc gcctcgggcg ggtcagcctt cgcacaggcc
      661 gtgaacggcg aaaacgccgg cggccagccg gccgccgcgg cgggaaatgc gctgaaccca
      721 cgggcggcgc aggctgccgc gctggccaag ctgcaggcgc acggcgagga gctgttcaac
      781 cagcgctgca agtcctgcca catgcccccg gtcgagcacg cgccgtcgcg ctcggaactg
      841 gccgcccagt tcccgaacgt catcgccgac gcgctcaaga ccggcaagat gcaggcgatg
      901 gccgcgggcc tgtcggacac cgacatcggc gccatcgcct cgtgggtcac cggccagtcg
      961 ccggacgcca agttcgacct ggcgggcgag gcgaagaacg cctgtccggt gggcgcaacg
     1021 ttcaacccgg ccggcccgtc gtggaacggc tggagccccg acaagcagaa cactcgcgtc
     1081 gcggcctcga ccaccatcaa tgccgcgaac acgccgaagc tcgcggtgaa gtgggccttc
     1141 gcctaccagg gcggccgcta cggccagccg accatcgtcg gcaaccgtgt gttcgtgacc
     1201 agctcatccg gccaggtcta tgcgctggat aaggccacgg gctgcatggc ctgggcctac
     1261 aaggcgcgcg gctcggtgcg ggtcaccgtt tccgtgggca aaaaccccaa ggccgcgtcg
     1321 ggttgggccg cctatttcgg cgacatgggc cgcaaccagg tggccgtgga cgccaacagc
     1381 ggcaaggaac tctggagcgt cagcatcgac gccgggccgc gcggcatcct gaccggcgcg
     1441 ccggcgctgt ggggcgacac gctttatgtg ccgctctcgt ccttcgagga gggcgtcgcg
     1501 ggcctggccg cctacgagtg ctgcaagcag cgtggcgcgg tcgcggccat cgacaccgcc
     1561 accggcaaga tcaagtggaa gtcctacgcc atcccgacgg cgccggcgcc cttcaagaag
     1621 aacgcggccg gcactcagat gtacgggccg gcgggcgcgg cgatctggtc gtcgccgacc
     1681 atcgatccca agcgcggcgt gctctacgtc gccaccggag acagctacac cgacgtcgag
     1741 gagcactatt ccgacgcggt cgaggcgatg gatctgaaga ccggcaagat caaatgggcg
     1801 caccagatga cggagctgga ccacttcctg gtcggctgcc cgccccagcg ccccggcgtg
     1861 aactgcccga cacccaacgg accggacttc gacttcgggt cctcgccgat cctcaagcat
     1921 ctgaagggcg gcaaggacat gctgctggcc ggtcagaagt caggcggcgt ctatggcctg
     1981 aaccccgacg acggcaagat catctggcag ctgcgcatcg gcaagggcag cgcgctgggc
     2041 ggcgtcgagt ggggcatggc cgcggacaac gacaacctct acgtcggcat cgccgaccgg
     2101 ggcatgccaa cgctctcggc cctgcggctc accgacggcg ccctgatctg gcgccaccgt
     2161 gcgccggagc cggccaagtg cagcttcgaa ggccgctgcg gcaacggcta ttccggcccg
     2221 cccagcctcg ccaatggcgt gctgttcgga gtcaaccagg atggccacat ccgcgccttc
     2281 gaggccaaga ccggcaagct cttgtgggac tacgacaccg cgggccgcca ctacgagacg
     2341 gtcaacgggg tgaaaaacca gcgcggcggc aacctcgact ccaacggcat caccttcgcg
     2401 ggctcgatgg ccttcctgat ggccggcttc aacggcgcct cgggctccag cgggccggac
     2461 aacgtcctgc tggccttctc ggtggacggg aaataggctt caccgcttca tgggctacga
     2521 accgaaaacc aaggcgaccg aggtcgatgt cgacgccttc atcgccggat cgccgaagcc
     2581 ggcggacggg gcggcggtct gcgccctgat gcgcaaggtg accggtctgg aggccaggat
     2641 gtggggcccg accatcgtcg gcttcggtga gcgggaatat gacctggccg gtggcaagaa
     2701 gggccgcatg ctggccatgg gtttctcgcc gcgaaagccg tcgctggtgt tctacatcaa
     2761 gcacgcgacg ggctgggacg agcggctggc ccgcctcggc aagcatggga cgggcaaggg
     2821 ctgcctctac atcaacaagc tcgccgacgt ggactcagcc gtgcttgagg agatggtcac
     2881 cgcggcctgg cgcgagacgg tgaagctcta gaccgcgccc tggttcatcg cccagctgac
     2941 gccgaagggg tccttcagcg cgccgtagcg gtcgccccag aacatggtcg ccaccggcgt
     3001 gatgacctcg cagccggcgt cggccgcgcg ctggaaccac gtgtcgatgt catcgaccat
     3061 cagggtgagc gtgaaggcct gcggcgcccc cagcggcatg ccctggtcgg ggaaagcatc
     3121 gttgagcatc aatgagccgc cgttgatgta gagatgggcg tggatgatcc gcttgccgtc
     3181 cgggtgcagc atccgggtga cctcctcgcc gccgaaggcc ttctggtaga aatcggacgc
     3241 cgcggcggcg tcgctgagct gcatgtagct gacgattccg cccttcggac ggggcattga
     3301 gcccggctcg atctggggca tgcggttctc gctcatggtg attcctccat cgaccttcgc
     3361 ccaaaggacg aacgacgcta ggcgggcccg acagggcgtg cgagtttttt caggcatgag
     3421 tccagacgcc tccctgaccc gccgtggcct gtctcgcctg atcgcggcct tcaccttcgc
     3481 cggcgccgcg cgcgccaggg cccaggcgac gggcccttac gacgtcctgc tcgagagcaa
     3541 cgtccgcgtg gcgatgcgcg acggggtgaa gctcgccacc gacgtctatc gtccggcccg
     3601 cggcggcaag gccatccccg gccgcttccc ggtggtgctt gagcgcacgc cctacggccg
     3661 cgatgtcacc agcttccggg acatcaccca ggccagtccg aagacgccca agacccgcgc
     3721 cgaggtggcc gcgacctatg tgcgacaggg ctatgtggtg gtcttccagg actgtcgcgg
     3781 ccgctacgat tccgaaggcc agttcgtcaa atatctgagc gagggcgccg acgggttcga
     3841 cacctgccgg tggctggcgg cgcaagcctg gagcgatggg cgcatcggaa ccatgggcct
     3901 gtcatacgcc gcccacaccc aggctgcgct ggcctgcctc aatccgccgg gactgaaggc
     3961 gatggtgctg gactgcggcg gcttttccaa cgcctaccag gacggcatcc ggcagggcgg
     4021 cgccttcgag ctgaagcagg tgacctgggc ctacaatctg ggcctggaga gccccgaggc
     4081 gcagaagaac ccgcggctga tggcggcgtt gaaggccgtc gacctcaagg ccgccttcgc
     4141 cgccatgccc tgggcgcccg gccatacccc gctgtcgctg atccccgact acgaggccta
     4201 tgtgctggac cagtggcggc acgggacttt cgacgcctac tggaagcagg tcggcatcta
     4261 cgccgagggc tcctacgacc agttttccga tgcggccatg gtgcacctgt ccggctggta
     4321 cgacgcctat tcgcgctcga cgaccgacaa ctatgtggcg ctctccaagc gcaagaccgg
     4381 gccggtacgg ctgatcatgg gtccctggac ccacggggcg cgttcgacga cctattccgg
     4441 ggacgtggag ttcgggccgg gcgcgacgct cgacgccatg ggccacgccg actacgacgc
     4501 ccagcgcctg gcctggttcg accgccacct gaagggctcc agccaggccg atcccgaccc
     4561 gccggtgcgc ctcttcgtca tgggcggcgg ctcaggacgc aagagtccgg agggccggct
     4621 gatgcacggc ggccgctggc gcgccgagag cgcgtggccg atcgccgatg cgcagacggc
     4681 ctactacgcc ctgcacggcg gcggcctgct ctcgagctcg aaccaatcgg cgacgggcga
     4741 gccactgacc tacgccttcg accccagcca tcccgtgccc agcatcggcg ggacgatcac
     4801 ttcgggcgag cccttgatgc gcggcggcgg ctatgaccag cgcgaggggc cgagcgtcta
     4861 tggctcgcgc cagccctacc ggccgctggc ggcccggccc gacgtgctgg tctttcagac
     4921 cccgcctctc aaggcggacg tcgaggtcac cggcgccatc gaggccaatc tgtgggtcgc
     4981 ctccgacggt cctgacaccg atttcaccat caagctgatc gacgtctatc cgccgaacga
     5041 ggattacccc gaaggcttcg cgctcaacct gaccgatgga atcctgaggt gccgctaccg
     5101 cgacagcttc gaggcgccga aaatgatgac gccgggcgag tggtatcaga tcaaggtcac
     5161 ggcctttccg acctcgaacc tgttcaaggc cgggcaccgc atccggctgg acatctcgtc
     5221 gagcaacttc ccgcacttcg acgtcaaccc caacaccggc gcgccggagg ggaccggcct
     5281 cacccgccgg gtggccagga acacggtctt cgtcgactca ggccggccga gccacgtcct
     5341 gctgccggtg gtccccgggc gcgcatgacc cggcggcgcg gagggctggg gctggcggcg
     5401 ggtgtcctcg ccgtcctgct ggtggcggcg gcccccgcgt cggcgcaacc gctcgagcct
     5461 tccgccgcca cggtgctggc gaaggtcaag gcggccgccg gcggcgagcg ctgggaccac
     5521 gtcgcgaccc tcagcgcgat cggggagaag accagctttg gcctggtcgg tccctacagc
     5581 gccatagagg acctcgtcac cggccggttc gcgcggcgct gcgactacgg cctgctcgcc
     5641 aacgccgagg gcctggatgc gttggggcgg tggcgccggg acaattccgg cggcgtccat
     5701 cccctcgatt ccgacgaggc caggacggtg gcgaccaccg agacctacct cgcccggcgc
     5761 ggctatctgt ttccggagcg gggcgaggcc gcgttcgccc ctgagccccc cgcgaccgag
     5821 ggcgccgaga ccttcgaccg gaccgt
//
LOCUS       DATAJL010000922         1915 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75281,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000922 DATAJL010000000
VERSION     DATAJL010000922.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1915)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1915)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1915
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75281"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1228)
                     /locus_tag="VHN39_17400"
     CDS             complement(<1..1228)
                     /locus_tag="VHN39_17400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease N-terminal domain-containing
                     protein"
                     /protein_id="HEX2818173.1"
                     /translation="MNIDVYSDRAKQAIQSAQSLALARGHQQFAPEHLLKVLLEEKDG
                     LSRALIQSAGGRPDEADTAVDVLLGKLPKVEGGTGQLYMKAEAARLFAGAELSAKEAG
                     DAFVTTERLLIAISKDGGDAAKVLKDAGASTKALEAAAADVRKGKTADSASAEEGYDA
                     LKRYARDLTQAARDGKLDPLIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG
                     LALRIVNGDVPESLKDKKLLSLDMGSLIAGAKYRGEFEERLKAVLNEVTAAEGSIILF
                     IDEMHTLVGAGKSEGAMDASNLLKPALARGELHCVGATTLDEYRKNVEKDAALARRFQ
                     PVFVSEPTVEDTISILRGLKEKYELHHGVRISDSAIVAAATLSNRYIADRFLPDKAID
                     LMDEVVRQEAVGDVAVG"
     gene            complement(1334..>1915)
                     /locus_tag="VHN39_17405"
     CDS             complement(1334..>1915)
                     /locus_tag="VHN39_17405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018062179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2818174.1"
                     /translation="ILGGQMGGEMKAALAQPTPQDVVASIARDPGYNSMMRTTCVATM
                     VSAGHALNALPQRATANVNCRILPGEAPEAVMATLAKVMDDPAIQIKMAGEKSPVSPP
                     PPLTPAITGPAEAVGHQLWPGVPLVPAMSTGATDGRFLTAGGVPTYGLSGMFGESDGG
                     GVHGLNERIRIRSLYEGREYLYRVVKLYANAAN"
BASE COUNT          261 a          638 c          668 g          348 t
ORIGIN      
        1 ctccaaccgc tacatcgccg accgcttcct gccggacaac ctcatccatc aggtcgatgg
       61 ccttgtccgg caggaagcgg tcggcgatgt agcggttgga gagggtggcg gcggccacga
      121 tggcgctgtc ggagatgcgc accccgtggt gcagctcgta cttctccttc agcccccgca
      181 ggatcgagat ggtatcctcg accgtgggtt cgctcacgaa caccggctgg aagcgccgcg
      241 ccagggccgc gtccttctcg acgttcttgc ggtactcatc cagcgtggtg gcgcccacgc
      301 aatgtagctc gccccgggcc agcgccggct tgagcagatt ggaggcgtcc atggcgcctt
      361 cgctcttccc ggcgcccacg agggtgtgca tctcgtcgat gaacaggatg atcgagcctt
      421 cggcggcggt gacctcgttc agcacggcct tcagccgttc ctcgaactcg ccgcgatatt
      481 tggcgccagc gatcaacgag cccatgtcga gggagaggag cttcttgtcc ttcaggcttt
      541 ccggcacgtc gccgttgacg atgcgcaggg ccaggccctc gacgatggcg gtcttgccga
      601 cgccgggctc gccgatcagc acggggttgt tcttggtgcg gcgcgacagg acctggatgg
      661 tgcggcgaat ctcctcgtcg cggccgatca gcggatcgag cttgccgtcg cgggcagcct
      721 gggtgagatc gcgggcgtag cgcttcagcg catcgtagcc ctcctcggcc gaggcgctat
      781 cggcggtctt gcccttgcgc acgtcagcgg cggcggcttc cagggccttg gtcgaggcgc
      841 cagcgtcctt cagcaccttg gccgcgtcgc cgccgtcctt ggaaatggcg atcagcaggc
      901 gctcggtggt gacgaaggcg tcgccggctt ccttggcgct cagttcggcg ccggcgaaga
      961 ggcgcgccgc ctcggctttc atatagagtt ggccggtccc gccctcgacc ttgggcagct
     1021 tgcccagcag gacgtcgacc gccgtgtcgg cttcgtcggg ccgcccgccg gcgctctgga
     1081 tcagcgcgcg cgacagcccg tccttttcct caagcagcac cttcagcagg tgctcgggcg
     1141 cgaactgctg gtggcctctg gccagcgcca ggctctgcgc cgactggatc gcctgtttgg
     1201 cgcggtcgga atagacgtcg atattcatca ggtccccttg gataggcaga ttggcgggac
     1261 cgcctcatca agcgcggtcc tgccctcccg atgtagtgtg gcagatgcgc cacacaagtc
     1321 gccttgatcc agatcagttc gccgcgttcg cgtagagctt gaccacccgg tagaggtact
     1381 cgcggccctc gtagagggaa cggatgcgga tgcgttcgtt gaggccgtgg acgccgccgc
     1441 catcgctctc gccgaacatg ccggagaggc cataggttgg cacgccgccg gcggtgagga
     1501 agcggccgtc ggtggcgccg gtggacatgg caggcaccag cggcacgccg ggccacagct
     1561 gatggccgac cgcctcggcg gggccggtga tcgcaggcgt cagcggcggg ggcggcgaga
     1621 ccgggctctt ctcgccggcc attttgatct ggatggccgg gtcgtccatc accttggcga
     1681 gcgtcgccat gacggcttcc ggcgcctcgc ccggcaggat gcggcagttg acgttggcgg
     1741 tggcccgctg tggcagcgcg ttcagcgcat ggccggcgct gaccatggtc gccacgcagg
     1801 tggtgcgcat catcgagttg tagcccgggt cgcgggcgat ggaggcgacc acgtcctgcg
     1861 gcgtcggctg ggccagcgcg gccttcatct cgccgcccat ctggccgccc aggat
//
LOCUS       DATAJL010000923         1734 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101962,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000923 DATAJL010000000
VERSION     DATAJL010000923.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1734)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1734)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1734
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101962"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VHN39_17410"
     CDS             complement(<1..337)
                     /locus_tag="VHN39_17410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818175.1"
                     /translation="MLAGLTPLSIGLLIVILAASALMSGLSGFGFSAIGALCLILLPP
                     KLGVPLLMTLSAANQIMSLRQLKADMQPIKHWWPNGPAPFLLGGLVGVPVGLAILSSL
                     PTSDLMFVFG"
     gene            637..1713
                     /locus_tag="VHN39_17415"
     CDS             637..1713
                     /locus_tag="VHN39_17415"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2818176.1"
                     /translation="MLLLILALAAAPASSPGTQEPAARTLSPVIVSPAAKPGQADATV
                     EMDDETAAGEFVAVWPAAAYNTRADGKVMLSCKINIHGLAEWCGIKTESPAGKGFGAA
                     ALQMRPTFKLKPAMGADGPMEAMMTIAVKFKAPDPQFDSGTNFLANRMPMNAVTMLSR
                     PVWAEAPSFSDLAAAYPAQGGNQEGYVVAHCQVLSSGLLKNCQMVKEFPAKKGFAHAA
                     MGIVHRFKVTAELATAPHSTPIWVDIPIRMPPPAETQGHPVISPNWLTGVDPRSAPGV
                     FPPEAVAKGLTTGRGVANCIVAADGSMSACTPDAGDPDGLGFSEAVAKLALLLKVNRW
                     SADAGPVDGGQVRVAIRINLKTGR"
BASE COUNT          298 a          655 c          554 g          227 t
ORIGIN      
        1 cgccgaagac aaacatcagg tccgaggtcg gcagcgaact caggatcgcc agccccaccg
       61 gcacccccac cagcccaccc agcagaaagg gcgccgggcc attgggccac cagtgcttga
      121 tgggctgcat gtcggccttc agctggcgca gcgacatgat ctggttggcc gccgacaggg
      181 tcatcaagag cggcaccccc agcttcggcg gcagcaagat caggcagagc gccccgatcg
      241 ccgagaaccc gaatccggaa agcccgctca tcagcgccga ggccgccagg atcacgatca
      301 agagcccgat cgaaagcggc gtgagtccag ccaacaacaa tgaaccacct caaatttact
      361 ggccgcccgg ggcggttccc ctgggcgcta ttcgacctgc cgcggcgcgg gccgagcgca
      421 aggatgagcg cgtgagtctt ctagcggcat cgcgggcccg ctcacccgcc gagcgcccgc
      481 ccttcccgga aacggcggcc ctcgcaggtc cggtcgccca gattctcagc aatctgccgc
      541 cgcggcgcct ctgaggggac acccgctccg gcgctaccca agcggccgcg cccatgcaaa
      601 gctttccccc acggccggcg aacgaggggg aactcgatgc tgctgcttat cctggctctg
      661 gccgccgccc cggcctcaag ccccgggacg caagagccgg cggccaggac cctgtcgccg
      721 gtcatcgtct cgcccgcggc caagcccggc caggccgacg ccaccgtgga gatggacgac
      781 gagaccgccg ccggcgagtt cgtcgccgtc tggcccgccg cggcctacaa cacccgcgcc
      841 gacggcaagg tgatgctgag ctgcaagatc aatatccatg gcctggccga gtggtgcggg
      901 atcaagaccg aatccccggc cggcaagggc ttcggcgccg cggccctgca gatgcgtccg
      961 accttcaagc tgaagcccgc catgggcgca gacgggccga tggaggcgat gatgaccatc
     1021 gccgtgaagt tcaaggcgcc ggacccccag ttcgattccg ggaccaactt cctggccaac
     1081 cgcatgccga tgaacgcggt gaccatgctg agccgtccgg tctgggccga ggcgcccagc
     1141 ttcagcgacc tggccgcagc ctatccggcg cagggcggca atcaggaggg ctacgtcgtc
     1201 gcccattgcc aggtcctgtc ctcgggcctc ctgaagaact gccagatggt caaggaattc
     1261 ccggccaaga agggcttcgc ccacgccgcc atgggcatcg tccacaggtt caaggtgacc
     1321 gcggagctcg ccaccgcgcc ccactcgacg cccatctggg tcgatatccc gatccgcatg
     1381 ccgccgccgg ccgagactca gggccacccg gtgatctcgc ccaactggct gaccggggtc
     1441 gatcccaggt ccgcgcccgg cgtcttcccg cccgaggccg tggccaaggg cctgaccacc
     1501 ggccgcggcg tcgccaactg catcgtcgcc gccgacggct ccatgtcggc ctgcacgccg
     1561 gatgccggcg accccgacgg cctgggtttt tccgaagcgg tggccaagct cgccctgctc
     1621 ctgaaggtca accgctggtc cgccgacgcc gggccggtgg acggcggcca ggtccgcgtc
     1681 gccatccgca tcaacctgaa gaccggacgc taggccccga ccggcccggc ggcc
//
LOCUS       DATAJL010000924         1721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75315,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000924 DATAJL010000000
VERSION     DATAJL010000924.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75315"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1482)
                     /locus_tag="VHN39_17420"
     CDS             complement(<1..1482)
                     /locus_tag="VHN39_17420"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2818177.1"
                     /translation="MPGLMLALALAASPTPPAQVHDYHDVVISPKGDLIAAIEADDLF
                     QSDAEPHPVVVVRARADGAVIARYDPCSACFYSGAAWSPDGQALAFVSLDRKTRSATL
                     QVVHAGKAEVALSFAGLLESPRWSPDGATLAVLATDRPRKMTGATQAGAPIVGEIGGA
                     TDEQRIAILPAAGGPLKFLSPADTFIYEYDWTPDGKAFVATEAKGDGDNNWWVAKLAA
                     VGVDGSFRQIADPGVQMKWPRVSPDGKSVTFIGGLHSDFGPTGGDLYVAPFAGGPAVD
                     RTPNFKGSLASLAWRGKTLFATAIVGDNNAVLTVDPTTGATKTLLSGPVSFSSGDGKV
                     SLSADGKLLAGVAEDFTTPPHIGAGPVASPRQITHDNDALTAQVSARSIHWKNDGFDV
                     QGWLTGPATLEPGKTYPMIVLVHGGPSSAVQPTYMWKGTTNDLVQHGFFVFQANPRGS
                     FGQGEAFTKANVKDFGGGDLRDILTGVDAVEKVAPVDDKRLGVY"
     gene            complement(1579..>1721)
                     /locus_tag="VHN39_17425"
     CDS             complement(1579..>1721)
                     /locus_tag="VHN39_17425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818178.1"
                     /translation="YLVPAVGSVEVNGVRLDARDGAAITGESALRITALEDAEVVLVD
                     AA"
BASE COUNT          261 a          560 c          636 g          264 t
ORIGIN      
        1 gtagacgccc agccgcttgt cgtcgaccgg ggccactttt tccaccgcat cgacgccggt
       61 caggatgtcg cgcaggtcgc caccgccgaa gtccttcaca ttggccttgg tgaaggcctc
      121 gccctggccg aaggagccgc gcggattggc ctggaagacg aagaagccgt gctgcaccag
      181 gtcgttggtc gtgcccttcc acatataggt cggctggact gccgagctcg ggccgccgtg
      241 gaccagcacg atcatcggat aggtcttgcc cggctcgagg gtggccgggc cagtcagcca
      301 gccctggacg tcgaagccat cgttcttcca gtggatcgag cgcgcgctga cctgggcggt
      361 gagcgcgtcg ttgtcatggg tgatctggcg cggtgaggcg accggccccg cgccgatgtg
      421 cggcggggtg gtgaaatcct cggcgacccc ggccagcagc ttgccgtcgg cgctgaggga
      481 gaccttgccg tccccggaag agaaggagac cgggccggag agcagggtct tggtcgcgcc
      541 cgtcgtcgga tcgacggtca gaaccgcgtt gttgtcgccg acgatggctg tggcgaagag
      601 cgtcttcccg cgccaggcca gcgaggcgag gctgcccttg aagttcggcg tccggtcgac
      661 cgctgggcca cccgcgaaag gcgccacata gaggtcgccg cccgtggggc cgaaatcgga
      721 gtgcagcccg ccgatgaagg tcaccgactt gccgtccgga gagacgcggg gccacttcat
      781 ctgcacgccg gggtcggcga tctggcggaa ggagccatcg acgccgacgg cggccagttt
      841 cgccacccac cagttgttgt cgccgtcgcc cttggcctcg gtggccacga aggccttgcc
      901 gtcgggcgtc cagtcgtact cgtagatgaa ggtgtcggcg ggcgagagga acttcagggg
      961 acctcccgcg gcgggcagga tggcgatgcg ctgttcgtcg gtggcgccgc cgatctcgcc
     1021 gacgatgggc gcgccggcct gggtggcgcc ggtcatcttg cgggggcggt cggtggcgag
     1081 gaccgcgagc gtcgcgccgt cgggcgacca tcgggggctt tccaggaggc ccgcgaagct
     1141 gagcgcgacc tcggccttgc cggcgtggac cacctgcagc gtggcggacc gggtcttgcg
     1201 gtccagggag acgaaggcca gcgcctggcc gtccggcgac cacgccgcgc cggaatagaa
     1261 gcaggccgag caggggtcgt atctggcgat aacggcgcca tcggcgcggg cccggacgac
     1321 caccaccggg tgcggctcgg cgtcggactg gaagagatcg tcggcctcga tggcggcgat
     1381 caggtcgcct ttcggggaga tcaccacgtc atgatagtcg tggacctgag ctgggggcgt
     1441 aggcgaagcc gccagcgcca aggccaacat caatcccggc atgtctcacg ctccccgaaa
     1501 atccgacttt ggggtgacgt atgggtcaag ctgggagggc cttcaagccc tcccagcacg
     1561 gacatccggg cgccggcgtt acgccgcgtc gaccagcacg acttcggcgt cttccagggc
     1621 ggtgatgcgc agcgccgact cgccggtgat ggcggcgccg tcgcgggcgt cgaggcgcac
     1681 gccgttcact tccaccgacc ccacggccgg aaccaggtag g
//
LOCUS       DATAJL010000925         1860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_101974,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000925 DATAJL010000000
VERSION     DATAJL010000925.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1860
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101974"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1186
                     /locus_tag="VHN39_17430"
     CDS             <1..1186
                     /locus_tag="VHN39_17430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818179.1"
                     /translation="TYRGAPITFAERKPLERITLGKPPSPALDGQSMPAIRAKLAQDL
                     GAPVASIVVAGERGLLSDRRIGRILRDRAAKVGVRDEEHFLIAPFQVGVRQADGSWAV
                     VRSQPPFGLSPWQQRVALWFVLSAIVMAPVAYVFARRLAAPIQLFADAAERLGRDPRA
                     EPLPVKGPAEIRVAANAFNEMQERLRRYVEDRTAMVGAIAHDLRTPLTRLRFRIEGLP
                     DEQKVKMSADIDQMEEMIAAALTFVRDASRPGERTPLELSSLLESLCDEMAETGASTE
                     VESGEKVVLEGDPMALRRLFTNLLENAVKFGGRARARVFRDASNAFVEIEDDGPGIPP
                     NDREKVFEPFYRREPSRSRQTGGIGLGLAVVRSIARGHGGDVDLINRIGGGLTARVQL
                     PL"
     gene            1363..1575
                     /locus_tag="VHN39_17435"
     CDS             1363..1575
                     /locus_tag="VHN39_17435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HEX2818180.1"
                     /translation="MPTTDTAKPRARRGFAAMNPERRREIARKGGASVPGEKRSFAKD
                     RDLAASAGRKGGEASRGGGRTRGREA"
     gene            complement(1626..>1860)
                     /locus_tag="VHN39_17440"
     CDS             complement(1626..>1860)
                     /locus_tag="VHN39_17440"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HEX2818181.1"
                     /translation="WNARESRIEMHLESLRDQKVRVAGRSFAFAKGETIHTENSAKFT
                     VERFADLAEKAGWTLEASWLSEEPAFAVVSLKA"
BASE COUNT          275 a          661 c          640 g          284 t
ORIGIN      
        1 cacctatcgc ggcgcgccga tcaccttcgc cgagcgcaag ccgctcgagc ggatcaccct
       61 tggcaagccg ccctcgcccg ccctggacgg ccagtcgatg cccgccatcc gcgccaagct
      121 ggcgcaggac ctgggcgcgc ccgtggccag catcgtcgtg gcgggcgagc gcggcctgct
      181 gtccgaccgc cggatcggcc gcatcctccg cgaccgggcg gccaaggtgg gcgtgcgcga
      241 cgaggagcat ttcctgatcg cgccgttcca ggtgggggtg cgccaggccg acggaagctg
      301 ggcggtggtt cgctcgcagc ccccgttcgg ccttagcccc tggcagcagc gcgtggccct
      361 gtggttcgtg ctatcggcca tcgtcatggc gcctgtggcc tacgtcttcg cccgccgtct
      421 cgcggcgccg atccagctgt ttgccgacgc cgccgagcgg ctggggcgcg acccgcgcgc
      481 cgagccgctt ccggtgaagg gcccggccga gatccgcgtg gcggcgaacg ccttcaacga
      541 gatgcaggaa cggctgcggc gctacgtcga ggaccgcacg gccatggttg gcgcgatcgc
      601 ccatgacctg cgcacgccgc tgacgcgtct gcgcttccgt atcgagggcc tgccggacga
      661 gcagaaggtc aagatgagcg ccgacatcga ccagatggag gagatgatcg ccgcggccct
      721 gaccttcgtg cgtgacgcca gccggccggg ggagcgcacg ccgctggagc tatcgtccct
      781 gctggaaagc ctctgtgacg agatggccga gaccggcgcg tcgaccgagg tcgagtccgg
      841 cgagaaggtg gtgctggagg gcgaccccat ggcgctgcgc cggttgttca cgaacctcct
      901 ggagaacgcg gtgaagttcg gcggccgcgc ccgggcgcgc gtgttccgcg acgcctccaa
      961 cgccttcgtg gagatcgagg acgacggacc gggcatcccg cccaacgacc gcgagaaggt
     1021 gttcgagccc ttctatcgcc gcgaaccctc ccgcagccgc cagaccggcg ggatcggcct
     1081 gggtctggcg gtcgtgcgtt ccatcgcccg cggccacggc ggcgacgtgg acctgatcaa
     1141 ccgcatcggc ggcggcctga ccgcccgggt gcaactgcct ctctagcggc cccgtcctcg
     1201 cgcatttgtg atcacgccgg gaaagccctt cccacggcga agcttgggct tcgcgatccc
     1261 tcttcgatcg gaatgtgtcg ttttcgacgc aaccttggct gcgcctcgtt ggttagcctg
     1321 accgtaacgc caccacgaga cgcaccgagg agcgtagtca tcatgcccac aaccgatacc
     1381 gccaagccgc gcgcccgaag gggcttcgcc gccatgaacc cggaacgacg ccgcgagatt
     1441 gcccgcaagg gcggcgcaag cgtaccgggc gagaagcgca gcttcgccaa ggaccgggac
     1501 ctggcggcgt cggccggccg caagggcggt gaagccagcc gcggcggcgg gcgcacccgc
     1561 ggtcgcgaag cctgatctcg gctggtcgct cttcctgatc ggccgaaagg tcggccagga
     1621 aacgctcagg ccttaagcga cacgacagcg aaggcgggct cctcgctgag ccagctggct
     1681 tccagcgtcc agcccgcctt ttccgccagg tccgcgaacc gttcgacggt gaacttggct
     1741 gagttctccg tgtggatggt ttcccccttc gcgaaggcga agctgcggcc ggcgaccctg
     1801 accttctgat cgcgcaggct ttccaggtgc atctctatgc ggctctcgcg cgcattccag
//
LOCUS       DATAJL010000926         9341 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75366,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000926 DATAJL010000000
VERSION     DATAJL010000926.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9341
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75366"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..189)
                     /locus_tag="VHN39_17445"
     CDS             complement(<1..189)
                     /locus_tag="VHN39_17445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phasin family protein"
                     /protein_id="HEX2818182.1"
                     /translation="MAAANAVKTTVDQFTAASNVAFKDGVEKTLAALNDANAHSKKNL
                     EAVVASVTAATKGAEALGA"
     gene            495..1769
                     /locus_tag="VHN39_17450"
     CDS             495..1769
                     /locus_tag="VHN39_17450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEX2818183.1"
                     /translation="MIQHARRLFLALGLAATTAFSAAATPAAAQIPYFQNLLAASQTK
                     YAAIVVDAKSGEILYAKHADSPRYPASITKIMTLYLTFEALASGKLHPDDKVLVSPHA
                     AAQAPTKLGVRAGDSVTVTDAMDGMATKSANDMAVAMAEKLGGTESRFAALMTLRAQE
                     LGMQNTHFVNASGLPDSRQLTTARDIAILSRAVMRDYPQYYKLFSLQEFTFRGQVMAN
                     HNHLLGRMQGVDGLKTGFTNASGFNLAVSAVRDNRRLIAVVMGGPTTAQRDQNAEDLL
                     LTGFDVMRRRGLGEKIVVAQNMFEPTELNGPVVRPPSEQGDGEQASLKIELASAPAGK
                     AGKIEIAPAHHAKAKWAVQVGEFRSKSDAHAQIALVEKKFSDQFDGVRGAAEKAGRKY
                     KAVFTGFAEADAKGACHALKAKRLACMVIEPA"
     gene            complement(1786..2211)
                     /locus_tag="VHN39_17455"
     CDS             complement(1786..2211)
                     /locus_tag="VHN39_17455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEX2818184.1"
                     /translation="MIYLAIGAAVLWFLVGLGRGQTVFKRREWRLVSGIFSLAALAAA
                     VYVALRGGWEIAIVLAILGLWTLTTARINPRAGRSASPSREMTDEEARSLLGVEADAS
                     PQEIQAAYTRLMRMAHPDKGGTTGLAVQLNAARDRLLRD"
     gene            complement(2228..3061)
                     /locus_tag="VHN39_17460"
     CDS             complement(2228..3061)
                     /locus_tag="VHN39_17460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division plane positioning ATPase MipZ"
                     /protein_id="HEX2818185.1"
                     /translation="MPQASVIVVGNEKGGAGKSTIAIHTATALLHADAKVAVLDLDLR
                     QQSTSHFFAHRRAWLDANDVTAPMPIEHPLSADGAALAKATDEEALARFEEAFAQASE
                     EADFVLIDTPGSDTAISRAAHGLADLIVTPMNDSFVDFDMLGIVDPVTLELTRHSLYS
                     ETVWNSRKARAVKDRKQIDWVVLRNRLAPTEARNRKRLDERVETLSRKVGFRIGPGLR
                     DRVIYRELFPFGLTVADLSPVIRPVAMSLQHVAARQELRALMTALGLSGFSDGEQIAA
                     E"
     gene            complement(3166..3573)
                     /locus_tag="VHN39_17465"
     CDS             complement(3166..3573)
                     /locus_tag="VHN39_17465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1489 domain-containing protein"
                     /protein_id="HEX2818186.1"
                     /translation="MALHMIKLCVGAATVEDLLEWQRTREPGGPWIMRTRQTPKRAAE
                     MVDGGSLFRVFKGVILCRQPVLAVNTVGEGPAARCEVTLDPTPIRVAPTPRRAFQGWR
                     YLDPKDAPPDLYTEGFGDMPQELARQLREAGAW"
     gene            3620..5407
                     /locus_tag="VHN39_17470"
     CDS             3620..5407
                     /locus_tag="VHN39_17470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007672534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2818187.1"
                     /translation="MSRLPEIPDESALARLFSQERVQNEAVWFSLPGGQTLFAAGDRS
                     EQLYFVRAGRLGAFRREQGHEVQFLGVIRPGEPAGEMSLIADAPHSADVVALRDSEII
                     AVPRDVFFEACEADTSVMIELAKLMMLRSRQAVTRGGVGEPSVFGFVSLGQSGALRPL
                     VDRLAREIVKLGYTVTTIGAEAQTAPTEWFSDVERTHDFVLYVAEVSDGGWRQVVARQ
                     VDRLFRVARGDRNPPKAEAVVDVPSPLQAQQLVDMILIHPPDTSRPSGSEAWSDAAQP
                     ARLFHLRRDNESDVQRIGRVLTGQSVGLVLSGGGARAYAHVGAVRALRERGVPIDFVG
                     GVSMGAVIAAGVAMGWDDEEMERRIKEAFVDTSPLADIAIPLLAMTHGLQVNERLAHN
                     FGETHIADLWLPFFCLSSNLTTGAYQMHRRGLLRRALRASISLPGILPPATDDQNVLV
                     DGAVMKNFPADVMRASQLGPIVGVDVTTGRSITADDVARPASVWRWIWSGQWRRGPPI
                     VSLLMRAATVSTSRDITAARAATDVLVMPEVSKVEIRDFSAYAPAVAEGYRAMIEALD
                     KLDRPVQELRRRPSLVEQAHTKALGAAGR"
     gene            complement(5404..5976)
                     /locus_tag="VHN39_17475"
     CDS             complement(5404..5976)
                     /locus_tag="VHN39_17475"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014566.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0071586 - CAAX-box protein processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane glutamic
                     endopeptidase"
                     /protein_id="HEX2818188.1"
                     /translation="MALLANGLALGAFTGLWIVLFQLVKAPGNPATDVSRYSPLTVAI
                     ILVSGALVGAVSEEVGIRGYLQGALERAVPIPVAIVLAALVLSPGHALTQGFVWSTLL
                     FYILVDIAYGATAYLTNSVYPGIVAHAVGLWVFFFLIWPHDAGRKLVTSGGADAWFWI
                     HLLQAVGFGALAIWAFTRLARIATRTAALP"
     gene            complement(6646..7332)
                     /locus_tag="VHN39_17480"
     CDS             complement(6646..7332)
                     /locus_tag="VHN39_17480"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2818189.1"
                     /translation="MININRSKFGKNIVALCAFGALGLGALSARADVIQMDQGALFEA
                     QYDYNGMGNGRGVGFSANQNFSITSAGIDLGVQGGALGADYTLSVYSSTDGHDAGSVL
                     ASTTFSDLTIGEGWVDRALNFSFTAGSFYVIDFARVDGQHLDDLGTHYSWEDQVPAGR
                     PVTYGPLTVLEGFEGAPPNNSNPLIPHMRFNADLAGGAVPEPASWALMIVGFAGIGAA
                     LRRRTASAVA"
     gene            7538..>9341
                     /locus_tag="VHN39_17485"
     CDS             7538..>9341
                     /locus_tag="VHN39_17485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004621399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEX2818190.1"
                     /translation="MTKPRPLILAATAALACALASPAAAAPSARARLRTEAALVTIVR
                     DDWGIAHIHGKTDAQAVFGMIYAQAEDDFSRVEMNYLTALGRTAEAEGEASIWKDLRQ
                     RLIVDPVDLKAKYAVSPVWLKALMDGWADGLNYYLATHPKVTPKVIRHFEPWMALSFT
                     EGSIGPDIEKAPLGDLEAFYGGRQTAALSDDEALKFKEPSGSNGMAISPALTKDGHAL
                     LLINPHTSFFFRAEQQVTSDEGLNAYGAATWGQFFIYQGFNDHAGWMHTSTGADTVDE
                     FAETIVRKEAPVFERHHKGPHVQADIEVTRASQPFYRYGTEERRVTTSTIAVAYRTPA
                     GGLASKTFTIFRTHHGPIVRAEGGKWIAMALMNRPVEALEQSFGRTKTTDLASFLKVA
                     ELAANSSNNTLFADSKGETALLLPQFMPRRDDRFDYTKPVDGSDPATDWKGITPFAET
                     AHVVNPASGWVYNSNDGPWWAAGPDSPKRAAFPRYMDEVGENPRTPHAVKVLGAARNL
                     TLQTLIDADFDSWLPAFDRMVPGLVQAHGALPAADPLKTRLAGPVSALGAWDDRWSAT
                     SVETSLAVGWGEALWAKVAPEAKRAGVDTYDYMLS"
BASE COUNT         1578 a         3179 c         3125 g         1459 t
ORIGIN      
        1 ggcgcccagg gcttcagcgc ccttggtggc ggcggtaacg gaggcgacga cggcttccag
       61 gttcttcttg gaatgggcgt tggcgtcgtt cagggcggcc agggtctttt cgacgccgtc
      121 cttgaaggcg acgttcgagg cggcggtgaa ctgatcgacg gtggtcttga cggcgttggc
      181 ggcggccatg ggttcaatcc ttcgggttcg gggcgcggcg gacgccgcac gcaagagaat
      241 cgcactgggg gcgagggccc cggaaagcat gccccttctc tcatgttgca gtgcagcagt
      301 caacggcttt ttgtgcagtg caacatttct gtcatgcgct gaatttgctg gggaaagccc
      361 tcccgcagcg caggcgcgac aaaacagccc gttcaacagc tgtttactct aatttcaggt
      421 tcgggctgtc atggtaggta gattcacggg cggtccagcg gccgttccca aacctttgat
      481 tcgacggacg aagcatgatc cagcacgccc gccgcctgtt cctagcgtta ggtctggccg
      541 ccaccaccgc cttctccgca gccgccacgc cggcggccgc gcagattccc tacttccaga
      601 atctgctggc ggcgtcgcag accaagtacg ccgcgatcgt ggtggacgcg aagtcgggcg
      661 agatcctcta cgccaaacac gccgacagcc cgcgctaccc cgcgtcgatc accaagatca
      721 tgacgctgta cctcaccttc gaggcgctgg cctcaggcaa gctgcatccc gacgacaagg
      781 tgctggtctc gccccacgcc gcggcccagg cgccgaccaa gctgggcgtc cgcgccggag
      841 actcggtcac ggtgaccgac gccatggacg gcatggccac caagtcggcc aacgacatgg
      901 ccgtggccat ggctgagaag ctcggcggga cggaaagccg cttcgccgcg ctcatgaccc
      961 tgcgcgccca ggagctgggc atgcagaaca cccatttcgt caacgcctcg ggcctgcccg
     1021 acagccgcca gctcaccacg gcccgtgaca tcgccatcct gtcgcgcgcg gtgatgcggg
     1081 actacccgca gtactacaag ctgttcagcc tgcaggagtt caccttccgt ggccaggtga
     1141 tggccaacca caatcacctg ctcggccgca tgcagggcgt cgacggcctg aagaccggct
     1201 tcaccaacgc ctcgggcttc aaccttgccg tctcggccgt gcgcgacaac cgccggctga
     1261 tcgccgtggt catgggcggg cccaccaccg cccagcgaga ccagaacgcc gaggacctgc
     1321 tgctcaccgg ctttgacgtg atgcgccgcc gcggtctcgg cgagaagatc gtcgtggccc
     1381 agaacatgtt cgaaccgacc gagctcaacg ggccggtcgt gcgtccgccc agcgaacagg
     1441 gcgacggcga gcaagcctcc ctgaagatcg agctggcctc cgcccccgcc ggcaaggcgg
     1501 gcaagatcga aatcgccccc gcgcaccacg ccaaggccaa gtgggccgtg caggtgggcg
     1561 agttccgctc caagtccgac gcccacgccc agatcgcgct ggtcgagaag aagttcagcg
     1621 atcagttcga cggcgtccgc ggcgcggccg agaaggcggg ccgcaagtac aaggccgtgt
     1681 tcaccggctt cgccgaggcc gacgccaagg gcgcctgcca cgccctgaag gccaagcggc
     1741 tggcctgcat ggtcatcgaa ccggcctgac cccggccttt cggacctagt ctcgcaacag
     1801 ccggtcgcgc gcggcattga gttggaccgc caggcccgtg gtcccgccct tgtccgggtg
     1861 ggccatacgc atcagtcggg tgtaggcggc ctggatctcc tgcggcgaag cgtcggcctc
     1921 gacgcccagc agcgagcgcg cctcctcatc ggtcatctcg cgagacggtg acgccgaccg
     1981 ccccgcgcgc gggttgatcc gcgcggtggt gagcgtccac agcccgagga tcgccaggac
     2041 gatggcgatc tcccagcctc cgcgcagggc gacgtagacg gccgcggcca gggcggcgag
     2101 ggaaaagatt ccggacacga gccgccattc ccggcgcttg aagaccgtct gaccccgccc
     2161 gagacccacc aggaaccaga gcaccgcggc gccgatcgcc agatagatca tgctgcgggt
     2221 ctctggccta ttccgcggcg atctgctcgc cgtcggagaa gcccgaaagg ccgagcgcgg
     2281 tcatcagggc ccgaagctcc tggcgcgccg ccacatgctg cagcgacatc gccaccggcc
     2341 ggatgacggg cgacaggtcc gccaccgtaa ggccgaaggg gaaaagttcg cggtagatca
     2401 cccggtcgcg caggccgggg ccgatgcgga agccgacctt gcgcgacagc gtctcgacgc
     2461 gctcgtccag gcgtttgcgg ttgcgggctt cggtgggggc caggcggttg cgcagcacca
     2521 cccagtcgat ctgcttgcgg tccttcacgg cgcgggcctt gcggctgttc cagacggtct
     2581 ccgaatagag gctgtggcgg gtcagctcca aggtcaccgg gtcgacgatg cccagcatgt
     2641 cgaagtcgac gaagctgtcg ttcatcggcg tgacgatcag gtcggccagg ccgtgggccg
     2701 cgcggctgat ggccgtgtcg ctgcccggcg tgtcgatgag cacgaagtcg gcctcttcgc
     2761 tggcctgggc gaaggcctcc tcgaagcggg cgagcgcttc ctcgtcggtg gccttggcga
     2821 gcgccgcgcc atctgcgctc aaggggtgct cgatgggcat gggcgcggtg acatcgttgg
     2881 catcgagcca ggcccggcgg tgggcgaaga aatggctggt cgactgctgg cgcaggtcga
     2941 ggtccagcac agccaccttg gcgtcggcgt gaaggagcgc ggtcgcggtg tggatggcga
     3001 tggtggactt gcccgccccg cccttctcgt tgccgaccac gatgacgctg gcctgcggca
     3061 tgttcgtaac tccttgagaa tcggctgagg ccgaatcact tgggactagg tgagcgcgca
     3121 gggccgacgc aggtcaacgc gacgccgcgt ggcgcctgtg gatgactacc aggcgccggc
     3181 ttcgcgcagc tggcgggcca gttcctgggg catgtcgccg aagccttcgg tgtagaggtc
     3241 cggcggcgcg tccttggggt cgaggtagcg ccagccctga aaggcccgcc tgggcgtcgg
     3301 cgccacgcgg atgggcgtcg gatccagcgt cacctcgcag cgggcggcag gcccctcgcc
     3361 cacggtgttt acggccagga ccggctggcg gcagaggatc acgcccttga acacccgaaa
     3421 gagcgagccg ccgtcgacca tctccgctgc gcgcttgggt gtctggcggg tgcgcatgat
     3481 ccaggggccg cccggctccc gcgtgcgctg ccattccagc aggtcctcga cggtcgccgc
     3541 gccgacgcag agcttgatca tgtggagcgc catggcgaag ccatagcccc gactctttgg
     3601 ccaagctagg ctcccgtccg tgtcccggct gcctgaaatc cccgacgagt cggcgctggc
     3661 gcgactgttc agccaggaac gcgtgcagaa cgaggccgtc tggttctccc tacccggcgg
     3721 ccagacgctg ttcgccgccg gcgaccgctc cgagcagctc tactttgtcc gcgccggccg
     3781 cctcggcgcc ttccgccgcg aacagggcca cgaggtgcag ttcctaggcg tgatccggcc
     3841 gggcgaaccg gccggcgaga tgtcgctgat cgccgacgcg ccccactccg ccgacgtggt
     3901 ggcgctcagg gactccgaga tcatcgcggt gccgcgcgat gtcttcttcg aggcctgcga
     3961 ggccgacacc tcggtgatga tcgagctggc caagctgatg atgctgagga gccgccaggc
     4021 tgtgacccgc ggcggggtcg gcgagccctc cgtgttcggc ttcgtgtcgc tgggccagtc
     4081 cggggcgctc aggccgctgg tcgatcggct ggcccgcgag atcgtcaagc tcggctacac
     4141 ggtcaccacc atcggcgccg aggcccagac cgcgcccacc gagtggttct ccgacgtgga
     4201 gcgcacccac gacttcgtcc tctatgtcgc cgaggtgtcc gacggcggct ggcgccaggt
     4261 ggtggcgcgc caggtggacc ggctgttcag ggtggcgcgc ggcgaccgca atccgcccaa
     4321 ggccgaggca gtggtggacg tcccctcacc gctgcaggcc cagcagctgg tcgacatgat
     4381 cctgatccat ccgccggaca ccagccggcc gtcgggctcg gaggcctggt ccgacgccgc
     4441 gcagccggcg cgcctgttcc acctgcgccg cgacaacgag agcgatgtcc agcggatcgg
     4501 ccgggtgttg accggccagt cggtgggcct ggtgctctcc ggcggcggcg ccagggccta
     4561 tgcgcacgtg ggcgcggtcc gcgcgctgcg cgagcgcggc gtgcccatcg atttcgtcgg
     4621 cggggtctcc atgggcgcgg tgatcgcggc gggcgtggcc atgggctggg acgacgagga
     4681 gatggagcgc cgcatcaagg aggccttcgt cgacaccagc ccactcgccg acatcgccat
     4741 ccccctgctg gccatgaccc acgggctgca ggtcaacgag cggctggcgc acaacttcgg
     4801 cgaaacccac atcgccgacc tgtggctgcc cttcttctgc ctgtcgtcga acctgaccac
     4861 cggcgcctat cagatgcacc gcaggggcct gctgcgccgg gcgttacgag cctcgatctc
     4921 gctgccgggc atcttgccgc ccgccaccga cgaccagaac gtgctggtgg atggcgcggt
     4981 gatgaagaac ttcccggccg acgtgatgcg ggcgagccag ctcgggccca tcgtcggcgt
     5041 cgacgtcacc actggccgca gcatcaccgc cgatgatgtg gcccggcccg cctcggtctg
     5101 gcgctggata tggtcggggc agtggcggcg cggcccgccg atcgtctcgc tcctgatgcg
     5161 ggccgccacg gtctcgacct cacgggacat caccgccgcc cgcgccgcca cggatgtcct
     5221 ggtgatgccc gaagtgtcca aggtggaaat ccgcgatttc agcgcctatg cgcccgccgt
     5281 ggccgagggt taccgggcga tgatcgaggc gctcgacaag ctcgaccgcc ccgtccagga
     5341 gctgcgccgc aggccaagcc tggtggagca ggcgcacacc aaggcgctgg gggccgcggg
     5401 ccgctaaggc agagccgctg tccgggtggc gatcctcgcc aggcgcgtga acgcccatat
     5461 cgccagggcc ccaaatccca cggcctgcag caggtggatc cagaaccagg cgtcggcccc
     5521 gcctgatgtc accagcttgc ggccggcgtc gtgtggccag atcaggaaga agaacaccca
     5581 taggccgacg gcgtgggcga cgatgcctgg atagaccgag ttcgtgaggt atgccgtcgc
     5641 cccataggcg atatccacca ggatgtagaa cagcagcgtc gaccagacga agccctgggt
     5701 cagcgcgtga cccggcgaca ggaccagggc ggcgagcaca atggcgacgg gaatgggaac
     5761 cgcccgttcc aaggcgccct ggaggtagcc gcggatgcca acctcctcgg agaccgcccc
     5821 gaccagggct ccgctgacga gaatgatagc caccgtgaga ggcgagtacc tggagacgtc
     5881 ggtggccggg ttgccgggcg ccttcaccag ctgaaacagg acgatccaga gcccggtaaa
     5941 cgccccgagc gctagcccgt tggcgagcag cgccaaggcc catgtcctgg ccgaaacggc
     6001 attggcgcga cggtagacgc gcctggcctc cgaggtatga gctggtggcc aacgaccgcc
     6061 cgcgtaaagc catgcgagcc aaagcaggcc tcccatcacc gggacggccc aaggaacacc
     6121 aattccggtc ttcagattgg ccacgagcag gcccgtccag aggcctcccg ggacgagggt
     6181 gaggaaaagg ctgacgagcg cgaaccagat cagcttcatt ggccgaggca tgggcgtgcc
     6241 tttcgttgtg ggctagacgc gggttgcgcc cgattggacg atccaagcag ccgccaaggc
     6301 gaaagtgttt gcgggcgcct tcgcaaaagc ttgcgatttc cttggggacc cgtccgcgcc
     6361 ggactcccgc aagccttagg ctgaaacgct caaagcgaca tttgcgcgag cgcccgaagc
     6421 gacccatatt gcgggtcctt gctcagcaac tgaaaggagg tgatccagtg tctcatagtg
     6481 aaaaccgtag cccggtgacc gtgacctgga cctccgcttg cggggtccgc gcctaggcct
     6541 agctctggca tagggtcgcg taccgctctg cggtccgact atggaaaggc cgccccggtg
     6601 acggggcggc ctttcgcatt tcgaagctgt ggaaagcccg tcgggttagg cgacggcgct
     6661 cgccgtgcgg cggcgaagag ccgcgccgat tccggcaaag ccaacgatca ttagcgccca
     6721 gctcgccggc tcgggaacag cgccaccggc caggtcagcg ttgaagcgca tgtgcgggat
     6781 cagcgggttg ctgttgttcg gcggcgcacc ctcaaaccct tcgagtacgg tcagcgggcc
     6841 gtaggtcaca ggacggcctg cggggacctg gtcttcccac gagtagtggg tgccgaggtc
     6901 gtcgaggtgc tggccgtcaa cccgcgcgaa atcgatcacg tagaacgacc cggcggtgaa
     6961 gctgaaattc aatgcccgat cgacccagcc ttctccgatg gtgaggtcgc tgaaggtcgt
     7021 cgaggccagc acggagccgg cgtcgtgccc gtcggtgctc gaatagacgg agagggtgta
     7081 gtcggcgcca agcgcaccgc cttgcacgcc cagatcgatg ccggccgagg tgatgctgaa
     7141 gttttggttg gcgctgaagc caacgccgcg gccgttcccc atgccgttgt agtcgtattg
     7201 cgcttcaaac agcgcgccct gatccatctg gatcacgtcc gcccgggccg acagggcgcc
     7261 gagaccaagc gcgccaaagg cgcacagcgc aacgatgttt ttgccgaatt tggatcgatt
     7321 tatattaatc atatagttgc ccttacgccc ctagaaactc ggctgtactg ccttcgtttc
     7381 ggaatctccg agcctaatct agattctctc ttctgaaata caagctaact cccctcatag
     7441 gcgactgagt gagttaacct tccgagcgcc tgtcgggcgg cttgcatttc cgatcttccc
     7501 tgcgaagttc cgcaccgagc ggttcgggac gatgagcatg acgaaaccac ggcctttgat
     7561 cctggcggcg acggcggcgt tggcctgcgc cctggcctcg cccgcagcgg cggcgcccag
     7621 cgcgcgggcg cggctgagga ccgaagccgc cttggtcacc attgtccgcg acgactgggg
     7681 catcgctcac atccacggca agaccgacgc gcaagccgtg ttcgggatga tctacgccca
     7741 ggccgaagac gacttctctc gcgtcgagat gaactacctc accgcgctcg gccgcaccgc
     7801 cgaggccgag ggagaggcgt cgatctggaa ggacctgcgc cagaggctga tcgtcgatcc
     7861 ggtcgatctg aaagccaaat atgccgtcag cccggtctgg ctgaaggcct tgatggacgg
     7921 ctgggccgac gggctgaatt actatctggc gacccacccc aaggtgactc ccaaggtcat
     7981 caggcacttc gagccctgga tggcgctgag ctttaccgaa ggcagcatcg ggccggacat
     8041 cgaaaaggcc ccgctgggcg atctggaggc cttctatggc ggccggcaga ccgcggcgct
     8101 ctccgacgac gaagccctga agttcaaaga gccgtccggt tccaacggca tggcgatctc
     8161 gcccgccctg accaaggacg gccacgcact tctgctgatc aacccgcaca cctcgttctt
     8221 cttccgcgcc gagcagcagg tgaccagcga cgaaggactg aacgcctatg gggcggccac
     8281 ctggggccag ttcttcatct accagggctt caacgaccac gccggctgga tgcacacctc
     8341 gaccggggcc gacacggtcg acgagttcgc cgaaaccatc gtccgcaaag aagctcccgt
     8401 cttcgagcgc caccacaagg gcccgcatgt ccaggcggac atcgaggtca cccgggcaag
     8461 ccaacccttc taccgctatg ggaccgaaga gcgccgggtg acgacctcga cgatcgccgt
     8521 cgcctaccgc acgccagcgg gcggcctggc cagcaagacc ttcacgatct tccgcacgca
     8581 tcacggcccg atcgtccgcg ccgagggcgg aaagtggatc gccatggccc ttatgaaccg
     8641 gccagtggag gcgctggagc agtcgttcgg ccggaccaag accaccgatc tcgcttcgtt
     8701 cctgaaggtg gcggaactgg cggccaactc ctcgaacaac accctcttcg cagactctaa
     8761 gggcgagacg gcgctgctgc tgccgcaatt catgcccagg cgtgacgacc gcttcgacta
     8821 caccaagccc gtcgacggct ccgaccccgc caccgactgg aagggcataa ccccgttcgc
     8881 cgagaccgcg catgtggtga acccggccag cggctgggtc tacaactcca acgacggacc
     8941 ctggtgggcc gcgggccccg acagccccaa gcgcgcggcc ttcccccgat acatggacga
     9001 ggtgggtgag aacccgcgga cgccccatgc cgtgaaggtg ctgggcgcgg cgaggaacct
     9061 caccctgcag accctgatcg atgcggactt cgactcctgg ctgccggcct tcgatcgcat
     9121 ggtcccaggc ctcgtccagg cccatggggc cctgcccgcc gccgatcccc tgaagaccag
     9181 gctcgccggg cccgtctcgg ccctgggagc ctgggacgac cgctggtcgg cgacgtcggt
     9241 ggagacctcg ctcgccgtgg gctggggcga ggcgctctgg gccaaggtgg cgcccgaggc
     9301 caagcgcgcc ggggtcgaca cctacgacta catgctgtcg c
//
LOCUS       DATAJL010000927         3386 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75416,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000927 DATAJL010000000
VERSION     DATAJL010000927.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3386
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75416"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     regulatory      complement(15..100)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01750"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="ZMP/ZTP riboswitches appear to regulate genes
                     involved in one-carbon metabolism; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="5-aminoimidazole-4-carboxamide
                     ribonucleotide (ZMP)/
                     5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl
                     5'-triphosphate (ZMT)"
                     /db_xref="RFAM:RF01750"
     gene            complement(129..1892)
                     /locus_tag="VHN39_17490"
     CDS             complement(129..1892)
                     /locus_tag="VHN39_17490"
                     /inference="COORDINATES: protein motif:HMM:NF019552.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heparinase II/III family protein"
                     /protein_id="HEX2818191.1"
                     /translation="MPGSALDRIPGGYQLFAASAALGRRMGLEWRASPLHHLLLSGPR
                     PEGLGAHPTDLRPADSEAGRRILAGGFVFGGETLTTGPRGDPWDRASPSRRFAAALHG
                     FGWLKDLTMHGDPGAWEALRLTLAWRRVFGRWNSFSWAPEIVERRVFNLACAIRAISG
                     PASDAEADQIAADLARQGRYLLGLRDGPVRAAERAAAAAVAGAALGGLAGEQLLDGAL
                     GRLVHLLPQTVAQDGGHASRSPQAGLELYFDLSTLDEVLTQRGVAPPDEMARAIDRLA
                     GAVRFLTLADGRLAAFQGGEALSPAYIAAARAQDEAPADRDPPKARGGYHRLETRSLQ
                     VVADASAPAPGALSLTACAQPLAIEVLAGGKRLIVGSGWSPGAPGPQALRLVDGASTA
                     SVSDAACGAPLSGFAARVLGPRLRDAYSILETRRHEAPGAFWLELAHDGWIHRYGLRH
                     ERRLYLDTEADELRGEDRLVPAARTRGRDGRRFVPFIVRFHLHPQISALISRDKKSVL
                     LKAEGEETGWWLRNDALEVTLEASTHHQDGQTRHGQQIVLRGQARLDAGAKVRWKLSS
                     AATERPDHTDGEKTSVDDGPS"
     gene            complement(1911..2576)
                     /gene="rpe"
                     /locus_tag="VHN39_17495"
     CDS             complement(1911..2576)
                     /gene="rpe"
                     /locus_tag="VHN39_17495"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEX2818192.1"
                     /translation="MARSSPLIAPSILSADFARLGEEARAVQDAGADWLHVDVMDGHF
                     VPNITIGPDVVRALRPHVTIPMDVHLMIAPADPYLDAFRDAGADMISIHPEAGPHLNR
                     SLRHIRSLGAKAGVVFNPSTDPSVIQWMMDDVDHVLVMSINPGFGGQTFMPSQLAKIT
                     AIRKMIDATGRNISLEVDGGVNPETAKLCVDAGATALVAGTAVFRGGPSAYAANIAAL
                     RGA"
     gene            complement(2623..>3386)
                     /locus_tag="VHN39_17500"
     CDS             complement(2623..>3386)
                     /locus_tag="VHN39_17500"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEX2818193.1"
                     /translation="LSLKDPTRAAELATALEATVLPGGSLRTAKRGDLATWPEFAEGA
                     WWVQDAAAAIPARLLDVQTGQTALDMCAAPGGKTLQLAAAGAQVTAVDRAPVRLKRVI
                     ENLARTGLTAETVTSDAAIWNDRRTFDAVLLDAPCSATGTFRRHPDVLWAAKPSDVAG
                     LAAVQSKLLDAAARRTKAGGRLVYCVCSLEPEEGEGQVAAFLGRTLEMTLDPIAAGEG
                     GAPAASVRPDGTLRILPQHIEGGMDGFYVARFRKA"
BASE COUNT          493 a         1196 c         1227 g          470 t
ORIGIN      
        1 ctcctggctt caacggaaaa tgcccaggcg agcggcgtcg atatggttcc gcgctccccg
       61 gtggtcgccc acctcagttt cgccagtcac gtggaatgtg cgcggcttag gcctgcgcct
      121 ccccttcgtc aacttgggcc gtcgtcaacg gaggtcttct caccgtcggt gtgatccgga
      181 cgttcggtcg cggccgagga cagtttccag cggaccttgg cgcccgcgtc gagccgggcc
      241 tgaccgcgca gcacgatctg ctggccgtgg cgggtctggc cgtcctggtg atgggtcgag
      301 gcctccagcg tcacctccag agcgtcgttg cgaagccacc agccggtctc ctcaccctcg
      361 gccttcagga gcacgctctt cttgtcgcgg gagatcagcg cgctgatctg cgggtggagg
      421 tggaagcgga cgatgaacgg cacgaaacgc cgcccgtccc ggccccgcgt cctcgccgcc
      481 ggaaccagcc ggtcctcgcc gcgcagctcg tcggcctcgg tgtcgaggta gagccggcgc
      541 tcgtggcgca ggccatatcg gtggatccag ccatcgtgcg cgagctccag ccagaacgcg
      601 cccggcgctt catggcggcg cgtctccagg atggaatagg cgtcgcgcag gcgtggaccc
      661 agcacccggg ccgcgaaccc gctcaacggc gcgccgcagg ccgcgtcgga gaccgaggcg
      721 gtggaggcgc cgtccaccag ccggagcgcc tgcggacccg gcgcgcccgg cgaccagccg
      781 gagccgacga tcagccgctt gccgccggcc agcacctcga tggccagcgg ctgggcgcag
      841 gcggtcaggc tcaaggcgcc tggcgccggc gcgctggcgt cggccaccac ctgcagtgag
      901 cgggtctcca ggcggtgata gccgccccgc gccttgggtg gatcccggtc cgccggagcc
      961 tcgtcctggg cgcgggcggc ggcgatataa gcgggagaca gcgcctcgcc gccctggaat
     1021 gccgccagcc ggccatcggc cagggtgagg aaccgcaccg cgccagcgag gcggtcgatg
     1081 gcgcgggcca tctcgtccgg cggcgcgact ccgcgttgcg tcaacacttc gtccaatgtg
     1141 gaaaggtcaa agtagagttc caggcctgcc tgcgggctgc ggctcgcatg gccgccatcc
     1201 tgggccacgg tctgcggcag gagatggacc agccgcccca gcgccccgtc gagcagttgc
     1261 tcgcccgcga gcccacccag agcggcgccg gccacagccg ccgcagcggc ccgctcagcc
     1321 gcccgcacag gcccgtcacg caggcccagc agatatcggc cctgacgggc gaggtcggcg
     1381 gcgatctggt cggcctcggc gtccgacgcc ggtccggaga tcgcgcggat cgcgcaggcc
     1441 aggttgaaca cccgccgctc gacgatctcc ggcgcccagg aaaagctgtt ccagcggccg
     1501 aacacgcgcc gccaggcgag tgtcaaccga agcgcctccc aggcgcccgg atcgccgtgc
     1561 atcgtcaggt ccttcagcca gccgaagccg tgcagggcgg cggcaaaccg gcggctgggg
     1621 cttgcgcggt cccaggggtc gccacgcggg ccggtcgtga gcgtctcgcc accgaacacg
     1681 aaaccgccag ccaggatgcg gcggccggcc tccgaatcgg cgggccgcag gtcggtgggg
     1741 tgggcgccca ggccttcggg gcgcggtccg gagagcagca ggtgatgcag cggcgaggcc
     1801 cgccattcca gccccatccg ccggcccagc gccgctgagg cggcgaagag ctgatagccg
     1861 cccgggatgc gatcgagggc tgagcccggc atcggctcaa gcgcctccgc tcaggcgccg
     1921 cgcagggcgg cgatgttggc ggcgtaggcc gaggggccgc cgcggaacac cgcggtgccg
     1981 gccaccagcg ctgtcgcgcc cgcgtccacg caaagcttgg cggtttccgg gttcacgccg
     2041 ccgtccacct ctagcgagat gttacggccg gtggcgtcga tcattttgcg gatcgcggtg
     2101 atcttggcga gttgcgaggg catgaacgtc tggccgccga agccgggatt gatcgacatc
     2161 accagcacat ggtcgacgtc gtccatcatc cactggatca cgctgggatc ggtcgagggg
     2221 ttgaacacca cgcccgcctt ggctcccaac gagcggatgt gcctcagcga gcggttgagg
     2281 tgcggaccgg cctccggatg gatgctgatc atgtcagcgc ccgcgtcgcg gaaggcgtcc
     2341 agataggggt cggccggcgc gatcatcagg tgaacgtcca tcgggatagt cacgtggggc
     2401 cgcagcgccc tcaccacgtc cggcccaatg gtgatgttgg gcacgaaatg gccatccatg
     2461 acgtccacgt gaagccagtc ggcgccggcg tcctgcaccg cgcgcgcctc ttcgcccagc
     2521 cgcgcgaagt ccgccgacag gatcgaaggc gcgatgagag gggaggagcg ggccatgagc
     2581 gtccgcataa cgtgatgcgg cgtctggagc cagagggcgg cgttacgcct tgcggaaccg
     2641 cgccacgtag aagccgtcca ttccgccctc gatgtgctgc ggcaggatac ggagcgtccc
     2701 gtcgggcctg acgctggcgg ccggcgctcc gccctcaccg gccgcgatcg gatccagcgt
     2761 catctccagc gtgcgaccga ggaaggccgc gacctgaccc tcgccttcct ccggctcgag
     2821 cgaacagacg cagtagacga ggcggccgcc ggccttggtg cggcgcgcgg cggcgtcgag
     2881 cagcttggac tgaacggcgg ccaggcccgc cacgtcgctg ggcttggcgg cccagagcac
     2941 gtccgggtgc cggcggaagg tcccggtggc cgagcagggg gcgtcgagca gcaccgcatc
     3001 gaaggtccgc cgatcgttcc agatggcggc gtcggaggtc acggtttcgg cggtgaggcc
     3061 cgtgcgggcc aggttctcga tgacccgctt cagccgcaca ggcgcgcggt ccactgcggt
     3121 gacctgggcg ccggcggcgg ccaactgcag agtcttgcca cctggcgcgg cgcacatgtc
     3181 gagcgcggtc tggcctgtct ggacatccag cagccgagcg ggaatcgccg cggcggcgtc
     3241 ctgaacccac caggcgccct cggcgaattc cggccatgtg gcgaggtcgc cgcgcttggc
     3301 ggtgcgcagg ctaccgccgg gcaggactgt ggcttccagc gccgtcgcca gttcggcggc
     3361 ccgcgtcgga tccttcagcg aaaggt
//
LOCUS       DATAJL010000928         2758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75559,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000928 DATAJL010000000
VERSION     DATAJL010000928.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2758
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75559"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VHN39_17505"
     CDS             complement(<1..248)
                     /locus_tag="VHN39_17505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase domain-containing protein"
                     /protein_id="HEX2818194.1"
                     /translation="MRLSELVKRDLANDPQIEGVTADSRKVRPGWLFAALPGAKVDGR
                     SFAPRAVEQGAVAVLAGREIEGLPAPLVIASDPRRVYAL"
     gene            complement(251..2011)
                     /locus_tag="VHN39_17510"
     CDS             complement(251..2011)
                     /locus_tag="VHN39_17510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEX2818195.1"
                     /translation="MSLGQSTFGPSWLSGRLSGLMWRFEHAFERARASGRAEDDTRIR
                     ILFVLALFSLGFVVLAVGATRAVLFSKVSVSDYAPPLGAARADLVDRNGQMLAADLLH
                     YGLYIDPREIWDTAETRRALTTNLPDLTAERLERALRAGRRTFVIGGLTPEVRAQVHD
                     LGLPGVSFEPEQKRVYPLGYTAAHLVGFADTGGEGLAGAEAALNEDIRNAAASQGSVP
                     LSIDLRIQAALEDELYKATAQFHPKGAAGVVVNVHTGEILGLASYPTFDPNKPGAASL
                     DARLNRAAGAVYEMGSTFKGFTVATGLDTGVATPTSTFDATHPFQLGYRTITDYHATH
                     AVLTLVEVFQHSSNIGTARLGEQIGPERLHAYFDRFGLTQPAKTELIESARPLTPKIW
                     NEDAIASTSFGHGINVTPLAVARAYSGLMNGGELLPLTIKKLPAGTVVHGPRMVSEDT
                     ARTLLQIMRSNVSCTCGSGKSANVPGLNVGGKTGTGEKWDPAARRYSNTRQVSSFAAV
                     FPTDGPLDAPRYFVLVLLDEPQRGTGPDPTGGIAAAPAAGHIIERIAPFLGVKRRPDT
                     MPFAPPADVAAAAANAAEEH"
     gene            complement(2008..2427)
                     /locus_tag="VHN39_17515"
     CDS             complement(2008..2427)
                     /locus_tag="VHN39_17515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007675753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein"
                     /protein_id="HEX2818196.1"
                     /translation="MNWLNRRVRGFRLVDLVAMGLLTVLILGVYLAKTIAGGERTKIA
                     SVERQIGAEKARIRLLQAEVSHLEQPARIERLSETYLGMAPVSFKREADPDALPDLAR
                     KPLALPAKPVEATADPTVMAPAQPAAPLPVPTQVAQR"
     gene            complement(2424..>2758)
                     /gene="mraW"
                     /locus_tag="VHN39_17520"
     CDS             complement(2424..>2758)
                     /gene="mraW"
                     /locus_tag="VHN39_17520"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="16S rRNA
                     (cytosine(1402)-N(4))-methyltransferase"
                     /protein_id="HEX2818197.1"
                     /translation="IAVNEELAELEAGLAAAERALKTDGRLCVVTFHSLEDRIVKTFF
                     AVRAGKTPGGSRHAPPVKTAAAPSFQLLFNGAQGASAEELAANPRARSAKLRAAVRTD
                     AAVWRAAA"
BASE COUNT          385 a          907 c         1057 g          409 t
ORIGIN      
        1 agcgcgtaga cccggcgcgg gtcggacgcg atcaccagcg gcgccggcag accctcgatc
       61 tcgcggccgg cgaggaccgc cacggcgccc tgctccacgg cgcgcggggc gaagctgcgg
      121 ccatcgacct tggcgccggg aagggctgcg aacagccagc cggggcggac cttgcggctg
      181 tcggcggtga cgccctcgat ctgcggatcg ttggcgaggt cgcgcttcac cagttcggag
      241 aggcgcatgg tcagtgttcc tccgcggcgt tggcggcggc ggccgcgacg tcggccggcg
      301 gcgcgaaggg catggtgtcg ggccggcgct tgacgcccag gaacggcgcg atccgctcga
      361 tgatgtggcc cgcggccggc gcggcggcga tgccgccggt ggggtcgggg ccggtcccgc
      421 gctgcggctc gtccagcagg accagcacga agtagcgtgg ggcgtccagc ggaccgtcgg
      481 tcgggaacac ggcggcaaag gaggacacct gcctggtgtt ggaatagcgc cgcgcggcag
      541 gatcccactt ttcgccggtg ccggtcttgc cgccgacatt gaggcccggg acgttggctg
      601 acttgcccga accgcaggtg caggagacgt tggaccgcat gatctgcagc agggtcctgg
      661 cggtgtcctc cgacaccatc cgcgggccgt gcacgaccgt tcccgccggc agcttcttga
      721 tggtcagcgg cagcagttca ccgccgttca tcaggccgga ataggcccgc gccaccgcca
      781 gtggcgtgac attgatgccg tggccgaagg aggtcgaggc gatggcgtcc tcgttccaga
      841 tcttcggcgt cagcggccgg gcgctttcga tcagttcggt cttggccggc tgggtcaggc
      901 cgaagcggtc gaaataggcg tgcaggcgtt ccggcccgat ctgttcgccg agccgcgccg
      961 tgccgatgtt ggaggagtgc tggaacacct ccaccaaggt gagcacggca tgggtcgcgt
     1021 ggtagtcggt gatcgttcgg tagccgagct ggaaggggtg ggtcgcgtcg aaggtcgagg
     1081 tgggtgtggc gaccccggtg tcgaggccgg tggcgacagt gaagcccttg aaggtcgatc
     1141 ccatctcata gacggcgccg gccgcgcggt tgaggcgggc gtccagactg gccgcgcccg
     1201 gcttgttggg atcgaaggtg gggtagctcg ccagacccag gatctcgccg gtgtggacgt
     1261 tgacgaccac gcccgccgcg cccttggggt gaaactgggc ggtggccttg tagagctcgt
     1321 cctccagcgc cgcctggatg cgcaggtcga tggaaagcgg caccgacccc tggctggccg
     1381 cggcgttgcg gatgtcctcg ttgagcgcgg cctcggcgcc ggccaggccc tcgccgccgg
     1441 tgtcggcgaa ccccaccaga tgggcggcgg tatagcccag cggatagacc cgcttctgct
     1501 ccggctcgaa gctgacgccg ggcaggccca ggtcatgcac ctgggcgcgg acttccgggg
     1561 tcaggccgcc gatcacgaag gtgcggcgcc cggcgcgcag cgcgcgctcc aggcgctcgg
     1621 ccgtaaggtc cggcaggttg gtggtgagcg cccggcgggt ctcggcggtg tcccagatct
     1681 cgcgcgggtc gatgtagagg ccgtagtgca gcaagtccgc ggcaagcatc tggccgttgc
     1741 ggtccaccag gtcggcgcgc gcggccccga gcggcggggc atagtcggag accgagacct
     1801 tggagaacag aacggcgcgg gtggcgccga ccgccagcac cacgaagccc agcgagaaca
     1861 gcgccagcac gaagaggatg cggatgcggg tgtcgtcctc ggcccggccc gaggcgcgag
     1921 cccgctcgaa ggcatgctcg aagcgccaca tcaggccgga gaggcggccg gacagccagg
     1981 agggtccgaa ggtcgattgc ccgaggctca tcgctgggcc acctgggtcg ggacggggag
     2041 cggcgcggcg ggctgggccg gcgccatgac ggtcgggtcc gcggtcgctt caaccggctt
     2101 ggccggcagg gccaggggct tgcgggccag gtccggaagg gcgtcggggt cggcctcgcg
     2161 cttgaaggag accggagcca tgccgaggta ggtttcggag aggcgctcga tgcgggccgg
     2221 ctgttccagg tggctgacct cggcctgcag cagtcggatg cgcgccttct cggcgccgat
     2281 ctggcgctcg acgctggcga ttttggtgcg ctcgccgccg gcgatggtct tggccaggta
     2341 gacgccaagg atcaggacgg tgagcagccc catggccacc agatccacca gccggaaccc
     2401 ccggaccctg cgattgagcc agttcatgcc gcagccctcc agaccgcggc gtcggtgcgc
     2461 accgcggccc gcagcttcgc cgaccgagcc ctggggttcg ccgccagctc ttccgccgac
     2521 gccccctggg cgccgttgaa cagcagctgg aagctcggcg ccgcggcggt cttcaccggc
     2581 ggcgcgtggc gcgatccccc tggcgtcttg ccggctcgca ccgcgaagaa ggtcttcacg
     2641 attctgtctt ccagcgaatg gaaggtgacg acgcagaggc gtccgtcggt tttcagcgcc
     2701 cgctcggcgg cggcgaggcc ggcctccagc tcggcgagtt cctcgttcac cgcgatgc
//
LOCUS       DATAJL010000929         3598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_89352,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000929 DATAJL010000000
VERSION     DATAJL010000929.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3598
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89352"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..781
                     /locus_tag="VHN39_17525"
     CDS             <1..781
                     /locus_tag="VHN39_17525"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEX2818198.1"
                     /translation="SDTSAVAIAAAVKAIRCDIYTDVDGVYTTDPRIESKARRLSKIS
                     YEEMLEMASLGAKVLQTRSVELAMAQGVPVRVLSSFVEPGEAPGQGTIVCDEDEIMEK
                     RIVSGVAYSRDEAKISLFGLPDHPGVSSIIFGALADANVNVDMIVQSHARTQDTANME
                     FTVGKRDAARAVEIVRAAQPQIGFDDVAVNDEVSKVSVIGVGMRSHTGVAKTMFAALA
                     EKGVNIQVISTSEIKISVLIDAAYTELAVRALHAAYGLDQL"
     gene            complement(778..1194)
                     /locus_tag="VHN39_17530"
     CDS             complement(778..1194)
                     /locus_tag="VHN39_17530"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2818199.1"
                     /translation="MDIRILQPGDEDLLIAAVDLADEGPLTRERATAHLADKDLVNVA
                     AVEGGEVVGFVYGHVLRRFEATSFFIYAVDTAPSHQRRGIAKAMLAALSDMGKAGRWD
                     EMFVLTNAGNEAAMALYASAGGVSPPPDDVVMFDFD"
     gene            complement(1204..2622)
                     /locus_tag="VHN39_17535"
     CDS             complement(1204..2622)
                     /locus_tag="VHN39_17535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2818200.1"
                     /translation="MDDTNPARNAHKAKNGWADLLAEGRLPRFAVICLGVWLNAADNL
                     VTATIMPSVGAQIGGYGYFSWATAGFLVGAIMAGASSGRISEIFGLRAATAIAGVIMA
                     GGCVMSALAPDVGTFLVGRLIQGLGSGWISGFAMVAIALLFPERHLTRVFASVTFVWG
                     IATVLGPLFGGAVLEGGTWRDVFWLFALQAGVFSAAAPFLLKGSAKAGGGPGVPWTQL
                     GVLGLGVAAIAVADVVKAPALSIGLVVAGLAVLAVVFWIDHRAKVRLLPHRAGDLRTV
                     VGSGYFAMFAMTAATMGFAIYAPPILQQLRGFSPLWAGYTIGAESAAWTLAAMLVAGA
                     TGVWDGRWIRIGVVCLITSLVMLALTMADGAFAWVLAGGSLMGAAFGFSYAFMSRRIL
                     GALSDQDRAIGSSGISAVRQTGAAAGAAISGVAANLGGFADGLTDASARSAALWVFVS
                     VIPLALVGGWAAFRLTGSAEKA"
     gene            complement(2649..>3598)
                     /locus_tag="VHN39_17540"
     CDS             complement(2649..>3598)
                     /locus_tag="VHN39_17540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818201.1"
                     /translation="TLVGEAHPLPAADQIWLWKDVGTAIGFVGFICLLIGAFEVLLTV
                     PVFASLNHPAEPVAERRTGKWWLAFLLTAAVPALTFYPFMKWGVLFFPMQLFPQSIQN
                     QLLVWALLNALITVVLGFVLRGGKPTFTTDWAKSAAIAAATIAVGYLALVLVDAVFKV
                     DFRFWVLGLKPLDARHAVMAIPYLVVWTVYFLVAFRALTANLGVRGDGFMWQAGSWKL
                     ALSLGFIVLLVVEYATLFQTGLLFTPKEPLNTIVAIQFVPLLATFGAIAAITYRRTNS
                     YVPGALICALLLSWYVTAGTATHWYPGFKLPVPGAARSR"
BASE COUNT          662 a         1299 c         1193 g          444 t
ORIGIN      
        1 ctccgacacg agcgccgtgg ccatcgccgc ggcggtgaag gccatccgct gcgacatcta
       61 caccgacgtg gacggggtct acacgaccga cccgcgcatc gaatccaagg cccggcggct
      121 gtccaagatc tcctacgagg agatgctgga gatggcctcc ctgggcgcca aggtgctgca
      181 gacccgttcg gtcgagctcg ccatggccca gggcgtgccg gtgcgcgtgc tatcgagttt
      241 tgtggagcca ggggaagcac cgggccaagg tacgatcgtg tgcgacgagg atgagatcat
      301 ggaaaagcgg atcgtgagcg gcgtggccta cagccgcgac gaggcgaaga tcagcctctt
      361 cggcctgccc gaccatccgg gcgtgtcgtc gatcatcttc ggggcgctgg ccgacgccaa
      421 cgtcaatgtc gacatgatcg tccagagcca cgcgcgcacc caggacacgg ccaacatgga
      481 attcaccgtg ggcaagcgcg acgccgcccg cgccgtggag atcgtccgcg ccgcccagcc
      541 acagatcggc ttcgacgacg tggcggtcaa cgacgaggtc tccaaggtct cggtgatcgg
      601 ggtcggcatg cgcagccaca ccggcgtcgc caagaccatg ttcgcagccc tcgccgagaa
      661 gggcgtcaac atccaggtga tctcgacgtc cgagatcaag atcagcgtcc tgatcgacgc
      721 ggcctacacc gagctcgccg tgcgcgccct gcacgcggct tacgggctgg accagctcta
      781 gtcgaagtcg aacatcacca cgtcgtccgg cggcgggctg accccgccgg cgctggcgta
      841 gagggccatg gcggcttcgt tgccggcgtt ggtgagcacg aacatctcgt cccagcggcc
      901 ggctttgccc atgtcgctca gcgccgccaa catggccttg gcgatgccgc gccgctgatg
      961 gcttggcgcg gtatccaccg cgtagatgaa gaagctggtg gcctcgaacc ggcgcagcac
     1021 gtggccgtag acgaagccca cgacctcgcc accctccacg gcggcgacat tcaccaggtc
     1081 cttgtcggcc aaatgcgccg tcgcccgctc gcgggtcagc ggaccttcgt cggccagatc
     1141 gacggcggcg atcagcaggt cctcgtcgcc gggctgaagg atgcggatgt ccatggccga
     1201 actctacgcc ttctcggctg agccggtcag ccgaaacgcc gcccagccgc ccaccagcgc
     1261 cagcgggatc accgagacga agacccagag cgcggccgag cgcgcgctgg cgtcggtcag
     1321 gccgtccgcg aacccgccca ggttggccgc caccccggag atcgccgccc cggccgccgc
     1381 gccggtctgg cgcaccgccg aaatccccga ggagccgatg gcccggtcct ggtcggagag
     1441 cgcgcccagg atccgccggc tcatgaaagc gtaggagaag ccgaaggccg cgcccatcag
     1501 cgacccgccg gccagcaccc aggcgaaggc cccatccgcc atggtgagcg cgagcatcac
     1561 caggctggtg atcaggcaca caaccccgat gcggatccaa cggccgtccc acacgcccgt
     1621 ggcgccggcg acaagcatgg ccgccagcgt ccaggccgcc gattccgccc cgatcgtgta
     1681 gccggcccag agcggcgaga aaccccgcag ctgctgcagg atcggcggcg cgtagatcgc
     1741 aaagcccatg gtcgccgcgg tcatggcgaa catcgcgaaa tagcccgaac cgacgacggt
     1801 cctcaggtcg ccggcccgat gcggcagcag ccggaccttc gcgcggtggt cgatccagaa
     1861 caccacggcc agcaccgcca gccccgccac caccaggccg atggagagcg ccggcgcctt
     1921 gaccacatcg gcgaccgcga tggcggccac gccgaggccc aggacgccga gctgggtcca
     1981 ggggacgccc ggcccgccgc cggccttggc cgaacccttc agcaggaagg gcgcggccgc
     2041 gctgaacacg ccggcctgca gggcgaacag ccagaagacg tcgcgccagg tcccgccctc
     2101 cagcaccgcg ccgccgaaca gcggccccag caccgtggcg atcccccaga cgaaggtcac
     2161 cgaggcgaag acccgggtca ggtgccgctc ggggaacagg agcgcgatgg ccaccatggc
     2221 gaagccggag atccagcccg agcccagccc ctggatcagt cgtccgacca ggaaggtccc
     2281 gacgtcgggc gccagcgcgc tcatcacgca gcccccggcc atgatcaccc cggcgatggc
     2341 ggtggcggcc cgcaggccga agatctcgga gatgcggccc gagctcgcac cggccatgat
     2401 cgcgcccacc aggaaccccg ccgtggccca gctgaaatag ccgtagccgc cgatctgcgc
     2461 gccgacgctc ggcatgatcg tggcggtcac caggttgtcg gcggcgttca gccagacccc
     2521 caggcagatc accgcaaacc gcggcagccg gccctcggcc agcaggtccg cccacccatt
     2581 cttggccttg tgggcgttcc gggcgggatt ggtgtcatcc atgcgggcga tctagcccaa
     2641 ggccgggctc agcgcgagcg cgcggccccg ggcacgggca gcttgaaccc cggataccag
     2701 tgggtcgcgg tccccgccgt cacgtaccag ctcaagagca gggcgcagat cagggcgccc
     2761 ggcacgtagg agttggtccg ccggtaggtg atcgccgcga tcgccccgaa ggtcgccagc
     2821 aacggcacga actggatcgc cacgatggtg ttcaggggct ccttgggcgt gaacagcagg
     2881 cccgtctgga acagggtcgc atactcgacg accagcagga cgatgaagcc caggctgagc
     2941 gccagcttcc agctgccggc ctgccacatg aagccgtcgc cccggacccc caggttggcg
     3001 gtcagcgcgc ggaaggccac caggaaatag accgtccaca ccacaaggta cgggatcgcc
     3061 atcaccgcgt ggcgcgcgtc gagcggcttc aggcccagga cccagaaccg gaagtccacc
     3121 ttgaataccg cgtcgaccag gaccagcgcc agatagccca ccgcgatggt cgccgccgcg
     3181 atggccgccg acttcgccca gtcggtggtg aaggtcggct tgccacccct gagcacgaaa
     3241 cccagcacca ccgtgatcag cgcgttgagc agagcccaga ccagaagctg gttctggatc
     3301 gactgcggga agagctgcat ggggaagaac agcacccccc acttcatgaa cggatagaag
     3361 gtcagagccg gaaccgccgc ggtcagcagg aaggccagcc accacttgcc cgtccgccgc
     3421 tcggcgaccg gttcggccgg gtggttgagg ctggcgaaca ccggaaccgt cagcagcacc
     3481 tcgaaggcgc cgatcagcag gcagatgaag cccacgaagc cgatcgccgt gccgacatcc
     3541 ttccagagcc agatctggtc ggcggccggc aacggatggg cctcgcccac cagggtct
//
LOCUS       DATAJL010000930         1789 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75675,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000930 DATAJL010000000
VERSION     DATAJL010000930.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75675"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VHN39_17545"
     CDS             <1..414
                     /locus_tag="VHN39_17545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HEX2818202.1"
                     /translation="DPNTGTVTLRAAFPNPTGLLLPGMYVRTHLSQATAQNAILVPQQ
                     GVARDPRGEATVYVVGPGDKAVLRSIKADRTIGDKWLVTSGLAAGDKVITEGLDKVKP
                     NQPVHPVPAGSAPRQHGGPGGSGGGKTSGASRPGL"
     gene            420..>1789
                     /locus_tag="VHN39_17550"
     CDS             420..>1789
                     /locus_tag="VHN39_17550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2818203.1"
                     /translation="MISRIFIDRPVFAWVIAIVIMLAGLGSITLLSVEQYPDIAPPQV
                     NIRANYPGASAEVLEASVTQIIEQQLTGIDGLIYFASTSDSSGNVNVTVTFVKGTNPD
                     IAQVQVQNKVQQALPRLPQEVQQQGLVVAKSNPDFLLIASIYDKTDRQSSADVSDYVV
                     SNLQEPIGRIAGVGDFRLFGAQYAMRIWLDPYKLSGVKLVPGDVISAIQAQNTQVAAG
                     QIGALPSGPGQMLNATVTAHSRLTTAEQFRKIILKTQTDGSKVLLGQVARVELGSENY
                     STLSRLNGHPASGIAVNLAPGADALKTAELVRAAILTASKSFPAGYEYTFPNDSTAFI
                     KLSVREVVQTLVEAIILVVIVMFIFLQSWRATLIPAIAVPVVLLGTFGILAIFHFSIN
                     VLTLFGLVLSIGLLVDDAIVVVENVERVMHEEPGISPRDATIKSMDQVQTALIAIALV
                     LSAVFLP"
BASE COUNT          297 a          636 c          546 g          310 t
ORIGIN      
        1 gatccgaaca ccggcacggt gacgctgcgc gcggccttcc ccaatccgac ggggctgttg
       61 ctgccgggca tgtacgtccg cacccacctc agccaggcga ccgcccagaa cgcgatcctg
      121 gttccgcagc agggcgtcgc gcgcgatccg cgcggtgagg ccacggtcta tgtggtcggg
      181 ccgggcgaca aggccgtcct gcggtcgatc aaggcggacc gcaccatcgg cgacaaatgg
      241 ctggtgacca gcggtctcgc ggcgggcgac aaggtgatca ccgagggcct cgacaaggtg
      301 aagcccaatc agccggtcca tccggttccc gccggctcgg cgccgcgcca acacggtggc
      361 cctggcggat ctggcggcgg caagaccagc ggcgccagcc ggccggggct ctaggtccca
      421 tgatttcccg gattttcatc gaccgtccgg tgttcgcctg ggtgatcgcg atcgtgatca
      481 tgctggcagg ccttggctcg atcacacttc tttcggtcga gcagtacccg gacatcgctc
      541 cgcctcaggt gaacatccgc gccaactatc ccggcgcctc ggctgaagtg ctcgaggcca
      601 gcgtcaccca gatcatcgag cagcagctca ccggcatcga cggcctgatc tacttcgcct
      661 cgacgtcgga ctcgtcgggc aacgtgaatg tcaccgtcac cttcgtgaag gggaccaacc
      721 cggacatcgc ccaggtccag gtgcagaaca aggtgcagca ggcgctcccg cgcttgccgc
      781 aggaggtcca gcagcagggc ctcgtcgtgg ccaagtccaa tcccgacttc ctgctgatcg
      841 cctccatcta cgacaagacc gaccgtcaga gcagcgccga cgtttccgac tatgtggtct
      901 cgaacctgca ggagccgatc ggccggatcg ccggtgtcgg cgacttccgc ttgttcggcg
      961 cgcaatacgc catgcgcatc tggctcgacc cctacaagct gtcgggcgtc aagctggtgc
     1021 ccggcgatgt gatcagcgcc atccaggccc agaacaccca ggtcgccgcc gggcagatcg
     1081 gcgctctgcc ctcaggcccc gggcagatgc tgaacgccac ggtcaccgcg cactcgcgtc
     1141 tgaccaccgc cgagcagttc cgcaagatca tcctgaagac ccagaccgac gggtcaaagg
     1201 tgctgctggg ccaggtggcc cgtgtcgaac tgggcagcga gaactactcg acgctcagcc
     1261 gtctcaatgg ccaccccgcc tcgggtatcg cggtcaatct cgcccccggc gccgacgccc
     1321 tgaagacggc cgagctggtt cgcgccgcga tcctgaccgc ctcgaagtcc ttcccggccg
     1381 gctacgagta caccttcccc aacgactcca ccgccttcat caagctctcg gtgcgcgaag
     1441 tcgtgcagac cctggtcgag gccatcatcc tggtggtcat cgtgatgttc atcttcctgc
     1501 agagctggcg ggcgaccctg atcccggcga tcgccgtgcc ggtcgtactg cttggcacct
     1561 tcggcatcct cgcgatcttc catttcagca tcaatgtgct gaccctgttc ggcctggtgc
     1621 tctccatcgg cctcctggtc gacgacgcca tcgtcgtggt cgagaacgtc gagcgcgtga
     1681 tgcacgagga gcccggaatc tcgccgcgcg acgccaccat caagtcgatg gatcaggtgc
     1741 agaccgccct tatcgccatc gctctggtgc tgtcggcggt gttcctgcc
//
LOCUS       DATAJL010000931         1993 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102119,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000931 DATAJL010000000
VERSION     DATAJL010000931.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102119"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(180..1555)
                     /locus_tag="VHN39_17555"
                     /pseudo
     CDS             complement(180..1555)
                     /locus_tag="VHN39_17555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011607949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA];
                     GO_process: GO:0006313 - DNA transposition [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182 family transposase"
     gene            complement(1789..>1993)
                     /locus_tag="VHN39_17560"
     CDS             complement(1789..>1993)
                     /locus_tag="VHN39_17560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818204.1"
                     /translation="STSELLDWLKLLMVEDIDDVALREKDPTKLIPPLHGALLKNEQD
                     IQLFERLAFLARREGSGARPGQM"
BASE COUNT          318 a          611 c          707 g          357 t
ORIGIN      
        1 ctgggcacag catccaggtc gaaaagccag gagctgtcat cggggccatc gaggagtgct
       61 ggccctggct gccgccgacg tccgctttcc cccgattgtg ttaaaaatcg cgacgctggt
      121 tagcttggtg ggatggctcg ggctgacggg atgtccgtgt gcagcgcggt cctggcggct
      181 caggtgggtg cgagcctgac cggggcgggg atcagcttgg cgagtttgcg caggttctgg
      241 gcggtggcgg cgaggaggaa ctcgtcgtgg gcgccgcagg ggccccgcag tcgcaatcgg
      301 tcgagtctga ggatgcgttt gaggtgggcg aacagcatct cgaccttctt tcgctcgcgt
      361 cgtgagacga ggtaggcctc ggtctgggcg atggctctgg cgtgatcgcg ggcggcttcg
      421 tggatggagc gggtcacctt gcgggccggc ccgttggggc agcacctggc cttcagtggg
      481 cagacgtcgc agtcgcgctt gctggcgcgg tagcggatgg tgtcgtcgct cagcgcttcc
      541 ggccttggcg tcctgaacag gcgccgtcgc ctgtgcagcg gcttcccagc tgggcaggtg
      601 taggcgtcgg cccccgcgtc gtaggcgaag tcggcgcgcg agagggtccc gtcggtgcgc
      661 tcggacttgt cgaagaccgg cacgtgcggt tcgatccgct ggtcgttgac cagccagttc
      721 agcatctcgg cggagccata ggccgtgtcc gcggccaggc gatcgggatg aaggtcgaag
      781 cgctccttgg cgcgcacgat catggtcttg caggcggtga cttcggcttg gcggatggcg
      841 gttgaagcct ccacgtcgac gatgacggcg tgcttcaggt cgatcaggta gttggtggaa
      901 taggcgtaga aggccatgcc gccgttggcg ccggtccagc gtgaggcggg atcggcgggg
      961 gcgagatact tgggaacgac cggcgtcgct cccccgaacg cggcgtcgtc cagcaccgcc
     1021 agatactcct cgaccgcgcg gctggtcacc tcggggtcca ggcccttggc gccgtcggtc
     1081 ccgctctgcc ggttggcgtc ggctttgatc aggctggcgt cgaccgcgaa accctcaccg
     1141 cccaccagtc cttcagccat gcaccggcgc acgatggtgt cgaacagctg gcgcaacagg
     1201 tcgctgtcac ggaagcggcc gtggcggttc ttggagaacg tcgaatggtc cggaacctcg
     1261 ccgtccaggc cgagccggca gaaccagcga taggccaggt tgagatgaac ctcctcgcac
     1321 agccgacgct ccgagcggat gccgaagcaa tagccgacca gcagcatccg gattagcaac
     1381 tccggatcga tcgagggcgg cccgtcgagc tgtagaacgg ggccagatgc gcccgctcgc
     1441 gttcaaggtc gaggaaccgg tcgatcgccc tcagcaggtg atttgccggc acatggcgat
     1501 ccagcgagaa cctgtagaac agcgcgccct gatcaacttg ccgttcgccc atcatgcgac
     1561 tcactccagg ctatatacct gaatagaatc agcgttctac ggcgtcagca aggccgcgtt
     1621 tttcaacgga atccccccat agcggccgtt cggaacggca gctttcgggc aatccagcgg
     1681 ccgggtgcgt tggctaccca atgccgagat gaggggacag gctagacgca aaacgcgagg
     1741 gcggatgtct ccgtcctcgc gtcaagcgtc ttgccgtgcg caggccgcct acatctgccc
     1801 cgggcgggcg cccgagccct cgcggcgggc gaggaaggcc aggcgttcga acagctggat
     1861 gtcctgctcg ttcttcagca gggcgccgtg cagcggcggg atcagcttgg tcggatcctt
     1921 ttccctcagc gccacatcgt cgatgtcctc gaccataagc agcttcagcc agtcgagcag
     1981 ctcggaggtg gag
//
LOCUS       DATAJL010000932         6173 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_111191,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000932 DATAJL010000000
VERSION     DATAJL010000932.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6173
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111191"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..163
                     /locus_tag="VHN39_17565"
     CDS             <1..163
                     /locus_tag="VHN39_17565"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX2818205.1"
                     /translation="TDRLVETYLVESPSGPSRKYYRLTEAGKASFTSQRSAWGSFSGA
                     VETILGGAK"
     gene            160..747
                     /locus_tag="VHN39_17570"
     CDS             160..747
                     /locus_tag="VHN39_17570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEX2818206.1"
                     /translation="MTRQAFMARLMEGLRGLPPAAQADILADYNIHFNEGAAAGRSEA
                     DVAAGLGDPGRLARELRAEAGLRRWEEERTASSGASAVFAVLGLGAIDILVLLPILMG
                     VASAIFCLAVATLAIFFAGGVLFAAGPFAVDHIPGGAAAAILAGIGLMTGAASGGAVL
                     SIVTIGLVNALVWYGRLHYRLLRPALEPQVSGGVQ"
     gene            744..1559
                     /locus_tag="VHN39_17575"
     CDS             744..1559
                     /locus_tag="VHN39_17575"
                     /inference="COORDINATES: protein motif:HMM:NF022441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2807 domain-containing protein"
                     /protein_id="HEX2818207.1"
                     /translation="MIRVLVMIAVTGFLMSVVTLSSAVAIGGPEIITDIARDGHFGWT
                     WNDRDWGGSRDWGRDRGPEGTREMAWTGGDTLDVDVPAEITYTQAPGAGKLTISGSQR
                     ALDNLVLEDGHLRFTHGRHHGGDLTIVMTAPAISQFNMNGSGRLAIEGYKQDKLSIDV
                     SGDTEVSAKGEAKGLTLSMSGSGQTDFSDLKLGDADIDIDGSGQATLAPTGAANINIS
                     GSGDVTLLTRPSKLESNVSGSGSIHQKDEGAAAASPSPPAPPNPPAKPKRART"
     gene            complement(1540..2031)
                     /gene="msrB"
                     /locus_tag="VHN39_17580"
     CDS             complement(1540..2031)
                     /gene="msrB"
                     /locus_tag="VHN39_17580"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEX2818208.1"
                     /translation="MSMLNPSRRGFLMATAFAAPVPSLALAAADPYAESPFRKLSDAD
                     WQKRLPRDAYEVLRHEDTERPGTSPLLNEHRKGTFVCLGCSLPLFKSDWKFESGTGWP
                     SFYTAIPGALARKMDLAIGVPRTEYHCAQCLGHHGHVFPDGPKPTGLRYCNNGEALRF
                     VPA"
     gene            complement(2090..2527)
                     /locus_tag="VHN39_17585"
     CDS             complement(2090..2527)
                     /locus_tag="VHN39_17585"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2818209.1"
                     /translation="MILRRVLADDAQAIAIVHRTAMRVSLSFLPELHTAEEDLWFFSE
                     RFLPANDVWVADADGQVAGYIGFDDRWINHLYLLPDFQGQGIGPQLLALALADDRPRR
                     LWTFQQNDRARRFYEARGFVLLELTDGSGNEEKTPDALYEWRP"
     gene            complement(2524..3501)
                     /gene="argC"
                     /locus_tag="VHN39_17590"
     CDS             complement(2524..3501)
                     /gene="argC"
                     /locus_tag="VHN39_17590"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007667178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEX2818210.1"
                     /translation="MTHTVFIDGEAGTTGLQIRERLAGRGDLDVVSIDPARRKDADAR
                     AELLNGVDAVVLCLPDDAAREAVSLVKSNSVRIVDASTAHRTDAAWAYGFAEMDAGQR
                     AAIAGSTRVSNPGCYPTGFIALVRPLVAAGLIPADYPLTVNAISGYSGGGKGLIAEFE
                     ARAPAGTNDAYRVYGLSLAHKHLPEMQRHTGLAHAPVFAPSVGRYAQGMIVEVPLQLW
                     SLPGKPDPSDVHATLQAAYAGERFVEVASGLECAELAQVRAGPGGYVAALDPEALNGT
                     NRMRLFVFPSADRTQVRLVALLDNLGKGASGAAVQNLNLMLGLEEGAGL"
     gene            complement(3584..4021)
                     /gene="rpsI"
                     /locus_tag="VHN39_17595"
     CDS             complement(3584..4021)
                     /gene="rpsI"
                     /locus_tag="VHN39_17595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEX2818211.1"
                     /translation="MGTVAEDVVVHERKVDAQGRSYATGKRKNAIARVWIKPGKGKIT
                     INGRDQEIYFARPVLRMMIAQPMDLADRAGQFDVVVSVQGSGLSGQAGAIRHGISKAL
                     TYYEPELRAVLKPHGLLTRDSRVVERKKYGKAKARRSFQFSKR"
     gene            complement(4081..4554)
                     /gene="rplM"
                     /locus_tag="VHN39_17600"
     CDS             complement(4081..4554)
                     /gene="rplM"
                     /locus_tag="VHN39_17600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEX2818212.1"
                     /translation="MMKTTASLKPAEVEKKWIVIDAENAVVGRLATFIAKRLRGKHRP
                     DYTPNVDCGDFVVVVNADKVKFTGKKLEDKIYYWHTGHPGGVKQRTAGQILDGRFPER
                     VLEKAVERMLPKESPLARKQLTHLRIYNAPEHPHAAQNPETIAFADLNAKNVRSA"
     gene            complement(4701..5330)
                     /locus_tag="VHN39_17605"
     CDS             complement(4701..5330)
                     /locus_tag="VHN39_17605"
                     /inference="COORDINATES: protein motif:HMM:NF028004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P460 family protein"
                     /protein_id="HEX2818213.1"
                     /translation="MQSRVRIFSAALAIAIAGGLGAAAVSRAETPAPALVYTTDGKLV
                     FPKDYRTWVFLSSGMDMAYLDGPPPSQHSFDSVFVNPAAYAVFQKTGTWPDKTVMVLE
                     ARKGQSRGSINKAGVFQTERIGAEVHVKDVARFKSGWAFFPGGDAPTSALSQTSQCNV
                     CHEKHAAVDTTFVQFYPTLLPTALEKKTLSAAYLADEAAAPDKAKDDKR"
     gene            complement(5477..>6173)
                     /locus_tag="VHN39_17610"
     CDS             complement(5477..>6173)
                     /locus_tag="VHN39_17610"
                     /inference="COORDINATES: protein motif:HMM:NF024242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2818214.1"
                     /translation="WLRLRAPTTRRLVSVCTGLYALGASGLMDGRRATTHWGYAAEIA
                     ARFPALRLEPDSIFIRDGCFATSAGVTAGIDLSLALVEEDLGPTAALAIARMLVVYLK
                     RSGGQRQFSEPLRFQVRAAGRFADLAAWMPANLKEDLSVEILARRVNCSPRHFARLFK
                     EAFGASPAEFVEALRLAEAAERIVNTTVTVDAVAASVGYASGTVFRRAFERRFGVTPS
                     LYRDRFSSKIAAE"
BASE COUNT          964 a         2064 c         2173 g          972 t
ORIGIN      
        1 gaccgaccgg ctcgtcgaga cctatctcgt cgagtcgcca tccgggccgt cgcgcaaata
       61 ctaccggctg acggaggccg gaaaggcgag tttcacctcg cagaggtccg cctggggctc
      121 gttctccggc gcggttgaaa ccattcttgg aggggccaaa tgacccgtca ggctttcatg
      181 gcccgtctca tggaaggcct tcgcggcctg ccgcccgccg cccaggccga cattctcgcg
      241 gactacaaca ttcacttcaa cgagggcgcg gccgccgggc gcagcgaggc cgacgtggcc
      301 gcgggcctgg gcgatcccgg ccggctggcc cgggagcttc gcgccgaggc gggcctgcgg
      361 cgctgggagg aggagcgcac cgcctcgtcg ggagcctccg ccgtcttcgc ggtcctggga
      421 ctgggcgcca tcgacatcct ggtcctgctg ccgatcctga tgggggtggc gagcgccatc
      481 ttctgcctcg ccgtggcgac cctggcgatc ttcttcgccg gcggcgtgct gttcgcggcc
      541 ggtcccttcg ctgtcgacca cataccgggc ggcgcagccg ccgcgatcct ggccggcatc
      601 ggcctgatga ccggggcggc ctccggcggg gcggtgctct ccatcgtcac catcggcctg
      661 gtcaatgcgc tggtctggta cggccgtctt cactaccggc tacttcggcc ggcccttgaa
      721 ccgcaagtct ctggaggggt gcaatgatcc gcgtgctcgt catgatcgcc gtaaccggct
      781 tcctgatgtc ggttgtcacc ctgtccagcg ccgtcgccat tggcggtccg gagatcatca
      841 ccgacatcgc ccgcgacggc cacttcggct ggacctggaa cgaccgcgac tggggcggct
      901 cccgcgactg gggccgcgac cgcggaccgg aagggacccg cgagatggcc tggaccggcg
      961 gcgacaccct cgacgtcgat gtgccggccg agatcaccta cacccaggcg cccggcgccg
     1021 ggaaactgac catcagcggc tcgcagcgcg ctctggacaa cctggtgctc gaggacggac
     1081 acctgcgctt cacccacggt cggcatcacg gcggagacct gaccatcgtc atgaccgcgc
     1141 cggccatcag ccagttcaac atgaacggaa gcggccggct ggccatcgaa ggctacaagc
     1201 aggacaagct cagcatcgac gtctccggcg acactgaagt cagcgccaag ggcgaggcca
     1261 aggggttgac cctgtccatg tccggttccg gccagaccga cttctcggac ctgaagctgg
     1321 gggacgccga catcgatatc gacggctccg gccaggcgac gctggcgccc accggcgcgg
     1381 ccaacatcaa catctccggc tcaggcgatg tgaccctgct gacccgaccc tcgaagttgg
     1441 agagcaacgt gtccgggtcc ggcagcatcc accagaagga cgagggtgcg gccgccgcct
     1501 cgccatcgcc gcccgcgccg cctaatccgc cggcgaagcc taagcgggca cgaacctgag
     1561 cgcctcgccg ttgttgcagt agcgcaggcc cgtgggcttg gggccatccg ggaagacatg
     1621 cccgtggtgg cccaggcact gggcgcagtg gtattcggtg cgcggcaccc cgatggcgag
     1681 gtccatcttc ctggcgagcg cgcctggaat ggcggtgtag aagctgggcc agccggtgcc
     1741 actctcgaac ttccagtccg acttgaagag cggcaggctg cagcccaggc agacgaaggt
     1801 ccccttgcgg tgctcgttca gcagcgggct ggtgcccggc cgctcggtgt cctcgtggcg
     1861 cagcacctca taggcgtcgc gcggcaggcg cttttgccag tccgcgtcgc tgagcttgcg
     1921 gaagggtgat tccgcatagg ggtcggcggc ggccagcgcg aggctgggaa cgggggcggc
     1981 gaaggccgtg gccatcagga agccgcggcg ggaggggttc agcatgctca tgcctcgaat
     2041 tcgtagcgac agggcgcgag gttacaagcg tgtcggcgct ttttgtgtgt caggggcgcc
     2101 attcgtagag ggcgtccggc gttttctcct cgttcccgga accgtcggtg agttcgagca
     2161 gcacgaagcc gcgggcctca tagaaccgcc tggcccggtc gttctgctgg aaggtccaga
     2221 gccggcgcgg tcggtcatcg gcgagcgcca gggccaggag ctgcggcccg atcccctgcc
     2281 cctggaaatc cggcagcagg tagaggtggt tgatccagcg gtcgtcaaaa ccgatgtagc
     2341 ccgccacctg accatcggcg tcggccaccc agacatcgtt ggccggcagg aagcgctcgg
     2401 agaagaacca gaggtcctcc tcggcggtat gcaactccgg gaggaagctc agcgagaccc
     2461 gcatggcggt gcggtggacg atggcgatcg cctgggcgtc gtcggcgagc acccgacgca
     2521 ggatcacagc cccgcgccct cctccaggcc cagcatcagg ttgaggttct gcaccgccgc
     2581 gcccgaggcg cccttgccga gattgtccag cagggccacc agccggacct gggtccgatc
     2641 ggcgctgggg aagacaaaga ggcgcatccg gttggtgccg ttgagggcct cggggtcgag
     2701 agccgccaca tagccgccgg gccccgcgcg gacctgggcg agctcggcgc attccaggcc
     2761 gctcgccacc tcgacgaacc gttcgcccgc gtaggcggcc tgcagcgttg cgtgcacgtc
     2821 agacggatcc ggtttgccgg gcagcgacca tagctgcagc gggacctcga cgatcatgcc
     2881 ctgggcataa cggccaacgc tgggggcgaa gaccggggcg tgggccaggc cggtgtgccg
     2941 ctgcatctcc ggcaggtgct tgtgggccag ggagaggcca tagacccggt aggcgtcgtt
     3001 cgtgccggcg ggagccctgg cttcgaactc ggcgatcagg cccttgccgc cgccggagta
     3061 gccggagatg gcgttgacgg tcagcggata gtccgccggg atcaggcccg cggccaccag
     3121 gggacgcacc agcgcgatga agccggtggg atagcagccg ggattgctga cccgcgtgga
     3181 gccggcgatg gccgcgcgct ggccggcatc catctcagcg aagccatagg cccaggcggc
     3241 gtcggtccgg tgcgccgtcg aggcgtcgac gatccgcacg ctgttggact tgaccagcga
     3301 caccgcctcg cgcgccgcgt cgtccggcag gcagagcacc acggcgtcga ccccgttcag
     3361 cagctcggcg cgggcgtcgg cgtccttgcg ccgcgccggg tcgatcgaga ccacgtccag
     3421 gtcgccgcgg ccggccaggc gctcacgaat ctgcaggccc gtggtgccgg cttcgccatc
     3481 gatgaaaacg gtgtgggtca tgacgtcagg atccagacaa agagaaaggg cgctccggtt
     3541 tcccgaagcg ccctctgcaa tcgcggctgt aggcgcgcga gcgttagcgc ttcgagaact
     3601 ggaagctgcg ccgggccttg gccttgccgt acttcttccg ctcaaccacg cggctgtcgc
     3661 gggtgagcag gccgtgcggc ttcagaaccg cgcgaagttc gggctcgtag taggtgagcg
     3721 ccttggagat gccgtggcgg atcgcgccgg cctggccgga gaggcccgag ccctgcacgg
     3781 agacgacaac gtcgaactgg cccgcgcgat cggcgaggtc catcggctgg gcgatcatca
     3841 tccgcagcac ggggcgggcg aaatagatct cctggtcgcg gccgttgatg gtgatcttgc
     3901 ccttgccggg cttgatccag acgcgggcga tggcgttctt ccgcttgccg gtcgcgtagg
     3961 agcggccctg ggcgtcgacc ttgcgctcgt ggacgacgac gtcctcggcg acggtgccca
     4021 tgcccttgag ggcgtcaaag ccggtagcgg cctcggggat cgtggtttcg tcagacatgc
     4081 tcacgcgctc cgcacgttct tggcgttcag atcggcgaac gcgatggtct cggggttctg
     4141 ggcggcgtgc ggatgctccg gcgcattgta gatgcgcagg tgcgtcagtt gcttgcgggc
     4201 cagcgggctt tccttgggca gcatgcgctc cacggccttc tcgagcacgc gctcggggaa
     4261 gcggccgtcg aggatctggc cggcggtgcg ttgcttgacg ccgcccgggt ggccggtgtg
     4321 ccagtagtag atcttgtcct cgagcttctt gcccgtaaac ttcaccttgt cggcgttgac
     4381 caccacgacg aagtcgccgc agtcgacgtt gggggtgtag tcggggcgat gcttgccgcg
     4441 aagacgcttg gcgatgaagg tcgcgaggcg gccgaccacg gcgttctcgg cgtcgatcac
     4501 gatccacttc ttctcgacct cggcgggctt cagcgaagcc gtggtcttca tcatgggacg
     4561 ggttccgtaa aactggcgga gcaaggcggc cccgacgtga gcgggcgcat atgccgacaa
     4621 tgccgggcgc tgtcaactcg gcgcgcggga aatatgctca catccttgaa aagacgaagc
     4681 tttcttaata cggtaatata ttaccgcttg tcgtccttgg ccttgtcggg ggccgccgcc
     4741 tcgtcggcca gataggccgc gctcagggtc ttcttctcca gcgcggtggg caggagcgtc
     4801 gggtaaaact gcacgaaggt ggtgtccacc gccgcgtgct tctcgtggca gacgttgcac
     4861 tgcgaggtct gcgacagggc cgaggtgggc gcgtcgccgc ccgggaagaa ggcccagccg
     4921 ctcttaaacc gggcgacatc cttgacgtgg acctctgcgc cgatccgctc ggtctggaag
     4981 acgcccgcct tgttgatcga gccgcggctc tggcccttgc gggcctccag caccatcacc
     5041 gtcttgtcgg gccaggtccc ggtcttctgg aacacggcat aggccgccgg attgacgaag
     5101 accgagtcga agctgtgctg cgacggcgga gggccgtcga gataggccat gtccatcccg
     5161 ctcgagagaa acacccaggt gcgatagtcc ttggggaaca ccagcttgcc gtcggtggtg
     5221 tagacaagcg ccggggcggg cgtttcggcc cgcgacaccg cggccgcgcc gagaccgccc
     5281 gcaatggcga tggcgagcgc cgccgaaaag atccgaaccc gcgattgcat gtctagcctc
     5341 gtctgcgacc cacgaccgcg ccgacacccc gatgcgtgcg gaggcgggcg gaccctggct
     5401 ttgtgagcca tgggccaaac ctccacaatg acccggatcg gacgattccg gacatgcgcc
     5461 gccctggccc gggccgtcac tccgcggcga tcttgctgga gaaccggtcg cgatagaggc
     5521 tgggcgtcac cccgaaacgg cgctcgaacg cgcggcggaa caccgtgccg ctggcgtagc
     5581 ccacagaggc cgcgaccgcg tcgaccgtca cggtcgtgtt cacgatgcgc tcggccgcct
     5641 cggccaggcg cagggcctcg acgaactcag cgggcgaggc gccgaaagcc tccttgaaca
     5701 gccgcgcgaa gtgccgcggg ctgcagttga cgcgccgggc caggatctcg accgagaggt
     5761 cttccttgag gttggccggc atccaggcgg cgaggtcggc gaagcgtccc gcggcgcgca
     5821 cctggaagcg caggggctcg gaaaactgcc gctgaccgcc cgagcgcttc agatagacca
     5881 ccagcatgcg cgcgatcgcc agggccgcgg tggggccgag atcctcctcc accagagcca
     5941 gcgacaggtc gatcccggcg gtcaccccgg cggaggtggc gaagcaccca tcgcggatga
     6001 agatgctgtc gggctccagg cgcagcgccg gaaagcgggc cgcgatttcc gcggcatagc
     6061 cccagtgggt cgtcgcccgc cgcccgtcca tcaggccgct ggcgcccagc gcgtagaggc
     6121 ccgtgcagac cgagaccaag cgccgggtgg tcggcgcccg cagccgcagc cac
//
LOCUS       DATAJL010000933         1831 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_111208,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000933 DATAJL010000000
VERSION     DATAJL010000933.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111208"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            239..742
                     /locus_tag="VHN39_17615"
     CDS             239..742
                     /locus_tag="VHN39_17615"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2818215.1"
                     /translation="MPIAAVALAASLAAFPAMATQVVFDFTSVDFFGDPSASGHWTLD
                     LSPTPSADFGVEFLIDAPISGEFDAGGVIYQIDSLGFRALIAGGGFDIVYGPDSFFSA
                     FDGPVLFTGLTSAPTFKLGTFSPFNSTLTISEAAVPEPATWGLMILGFGAVGAALRRR
                     GRALRLA"
     gene            complement(744..848)
                     /locus_tag="VHN39_17620"
                     /pseudo
     CDS             complement(744..848)
                     /locus_tag="VHN39_17620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558212.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS5/IS1182 family transposase"
     gene            1235..>1831
                     /locus_tag="VHN39_17625"
     CDS             1235..>1831
                     /locus_tag="VHN39_17625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2818216.1"
                     /translation="MSPTITAFKTSPDRGRGLARDMRVRWALEEVGQPYDVRLVSFTE
                     MKEAAHLALHPFGQIPTYEDGDLALFESGAIVLHIAGRHVGLLPDDAKARARAIMWMF
                     AALSTMEPPIVERFVAALVERDKSWSEERLPLVEDRIRVRLGELSTRLGEADWLDGAF
                     SAGDLMMVSVLLRLKVSGILDAYSNLSAYVARGEARPAY"
BASE COUNT          269 a          612 c          594 g          356 t
ORIGIN      
        1 accatgagtt ctacctggcc gcccgccact tccgccggct gcctcatcgc cgcaacctga
       61 tgctcggcct gaccgaccat ttcgtccgtc gtttcggccc cggcatcgta cccgcacccg
      121 tcacgcgtgc gctgcgcgcc aagccgaata ctggtgcaat aatgttccgt tagccttccg
      181 ccttgaggcg cgtccgtttc gcgtcgccgg cgggtgggag tagatcatca tgaaacgatt
      241 gccgatcgcg gccgtggcgc tggcggcgag cctggcggcc tttccggcca tggcgacgca
      301 ggtggtgttc gactttactt cggtcgattt tttcggcgat cccagcgctt ccggccactg
      361 gacgctggat ctctcgccaa cgccatcggc cgatttcggc gttgagtttc ttatcgacgc
      421 accgatatct ggcgagttcg acgcgggtgg cgtcatctac cagatagaca gtctgggttt
      481 cagggctctg atcgccgggg gcgggtttga catcgtctat ggccccgact cgttcttcag
      541 cgcttttgat gggccggtat tgttcactgg gctaacctcg gcgcccacct tcaaactcgg
      601 gacgttttct cccttcaatt cgacattgac catctccgag gccgccgtgc cggagccggc
      661 gacctggggg ctgatgatcc tgggctttgg cgccgtcggc gcggccctgc ggcggcgggg
      721 cagggcgctc cgcctcgcct gagctagatc gtggactcat aagctctgag ccagaggcgg
      781 gttgagacga gcaggacggc cgcgaggacg tttcttgcga gcttgtcgaa gcgggtggcc
      841 acgcgccggt cgtccacacg cgggacccgg cgcggacatt cggtaggtcc gcccccgggg
      901 cgcgaacccg agtcacccgc ccggggcgtt tggccgacct tcgctccgcc acccctcacg
      961 ccgccatccg cgccttgaac accccatcgg acaggcgcgc ggcgcgggtc gggtggagtc
     1021 gtccttccag cgcctatcgg cggccacgct aaaacgctcc tccagccgcc tcgcacgtcg
     1081 aggcggccca ttacgaaaaa attcgagcgg gtgtcgtgag gcccacccgt cgttcgtcct
     1141 cgggatagga agaccccgga gagacagtgc gggagacgat cgccatgacc cgtgtcacgc
     1201 tgggcggcgt caggccgtcg cccggagccg ccctatgagc cccaccatca ccgccttcaa
     1261 aacctcgccc gatcgcggca ggggactggc gcgtgacatg cgcgttcgct gggcgcttga
     1321 agaggtcggc cagccctacg acgttcgtct ggtttcgttc actgagatga aggaagccgc
     1381 gcatcttgcg ctgcatccct tcgggcagat cccgacctat gaagacggcg atctggcgct
     1441 gttcgagtcg ggcgccatcg tgttgcatat cgccgggcgc catgtgggcc tgctgccgga
     1501 cgatgcgaag gcccgggcgc gcgcgatcat gtggatgttc gccgcgctca gcacgatgga
     1561 gccgccgatc gtggagcgct tcgtggccgc gctcgtggag cgcgacaaga gctggtccga
     1621 ggagcgcctg ccccttgtcg aggatcgcat ccgtgtccga ctgggcgaac tatccactcg
     1681 gcttggcgag gccgactggc tcgacggtgc gttcagcgcc ggcgacctga tgatggtgtc
     1741 ggtgcttctc aggttgaaag tatcaggcat tctggacgcc tattcgaacc tttccgccta
     1801 tgtcgcccgc ggcgaagcgc gccccgccta c
//
LOCUS       DATAJL010000934         2017 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102270,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000934 DATAJL010000000
VERSION     DATAJL010000934.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102270"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..741)
                     /locus_tag="VHN39_17630"
     CDS             complement(<1..741)
                     /locus_tag="VHN39_17630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818217.1"
                     /translation="MRYLEGGGTRADVVAHRRWGKDEVALHWAAIRAVRRPGSYWHLL
                     PEASQGRKAVWDAVNPHTGKRRIDEAFPPHIRTRTRDADMMIHFRSGSTWQVVGSDNF
                     NSLMGSPPIGVVFSEWSLAKPEAWSHIRPILLENDGWALFLWTPRGRGHATRAFESRV
                     LRPDEWFTLKSPATDTDVFTREQLDRERAEMIAELGSEEEGHARYASEYLVDFDAAAP
                     GAYYAGLLGEAEREGRLGRVPYDPALRVD"
     gene            complement(804..1097)
                     /locus_tag="VHN39_17635"
     CDS             complement(804..1097)
                     /locus_tag="VHN39_17635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818218.1"
                     /translation="MSSRSPKAAPARPTPEAKLKRKAQAMSFLALEALAKMLLAEDVP
                     APVRLAAAREVLDRAHGRPRVGDGAAAPEGLTVIVRRFTDAPDPEAGEYEERA"
     gene            complement(1216..>2017)
                     /locus_tag="VHN39_17640"
     CDS             complement(1216..>2017)
                     /locus_tag="VHN39_17640"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2818219.1"
                     /translation="TDFAFHVPIIVASEIIGIPTDDREAFRAAFELTGRLMAPKRSEE
                     AWAEALEAGRFVGRYTRDLTAERRGAPRDDLISALIAAEDERGALSDPELSSAISTIY
                     TAAGTTTERMISSGLYLLLSHPDQWRALVADRGLVGGAIEEILRFHHPTQSTSTNRRC
                     TADVELRGKTLKAGDTVRVGLGAANRDPDAFPNPERFDIRRHMAVPPLSFGAGPHFCM
                     GAALARFETRLAIEAIADRWPDLTLITTAPAKDPRRHDRYRELIVQAG"
BASE COUNT          291 a          754 c          665 g          307 t
ORIGIN      
        1 gtccaccctg agcgccgggt catagggcac gcgccctaac cgcccctcgc gctccgcctc
       61 gcccagcagg cccgcgtaat aggcgcccgg cgccgcggcg tcgaagtcca ccagatactc
      121 cgaagcgtac cgggcgtgcc cctcctcctc gcttcccagc tcggcgatca tctccgcccg
      181 ctcccggtcg agctgctcgc gcgtgaacac gtccgtatcc gtcgccggcg acttgagcgt
      241 gaaccactcg tccggccgca gcacccggct ctcgaacgcc cgcgtcgcat gcccccgccc
      301 gcgcggcgtc caaaggaaca gggcccaccc atcgttctcc agcaggatcg gacggatgtg
      361 gctccaggcc tcgggcttgg ccagcgacca ctcggaaaac accaccccga tcggcggcga
      421 gcccatcagc gagttgaaat tgtccgagcc caccacctgc cacgtggaac cgctgcggaa
      481 gtgtatcatc atgtcagcgt cgcgcgtgcg cgtgcgtatg tgcggtggga acgcctcgtc
      541 gatacgccgt ttgccggtgt gcgggttcac cgcgtcccac acggccttgc ggccctgcga
      601 ggcctccggc agcaggtgcc agtaggaccc tggccgccgc accgcgcgga tcgccgccca
      661 gtgcagcgcc acctcatcct tgccccatcg ccggtgggcg accacgtccg cgcgggtccc
      721 gccgccttcc agatagcgca tcaaggactt ctggtaggac cgaggcctcc aggacgatgg
      781 cagctcgaat tcccccctcc cgctcacgcg cgctcctcgt actccccggc ctcggggtcc
      841 ggcgcatcgg tgaaccgcct cacgatcact gtcaggccct caggcgccgc cgcgccatcc
      901 ccgaccctcg ggcgcccatg cgcccggtcc agcacctcgc gcgccgccgc cagcctcacc
      961 ggcgcgggca cgtcctcggc gagcagcatc ttcgccaagg cctcaagggc caggaagctc
     1021 atcgcctgcg ccttgcgctt cagcttggcc tcgggcgtgg ggcgtgcagg cgcggccttc
     1081 ggtgaccgtg aggacatcgg aaactccttg atctgtggaa ttggcgcgga gccgtagccc
     1141 cactccccac tcatccccgc gaaggcgggg acccaggttt tttcagtcgc cggaaggccg
     1201 tcctggagga tgaacttagc ccgcctgcac gatcagctcg cgatagcggt cgtgacgccg
     1261 cggatccttt gcgggcgccg tggtgatcag cgtcaggtct ggccagcggt cggcgatggc
     1321 ctcgatggcc aggcgcgtct cgaacctcgc gagcgcggcg cccatgcaga aatgcggtcc
     1381 cgcgccgaag gacagcggcg gcacggccat gtggcggcga atgtcgaacc gctccggatt
     1441 ggggaaggcg tcgggatcgc ggttggcggc gcccaggccc acgcgaaccg tgtcgccggc
     1501 cttcagcgtc ttgccacgca gctcgacgtc tgccgtgcag cggcggttgg tggaggtgga
     1561 ctgggtcggg tgatggaacc gcaggatctc ctcgatcgcc ccgccgacca gcccacgatc
     1621 cgccaccagg gcgcgccact ggtccgggtg cgagagcagc aggtagaggc cgctggaaat
     1681 catccgctca gtggtggtcc ccgcggcggt gtagatcgtg ctgatcgccg aggagagctc
     1741 cgggtcgctc agcgccccgc gctcatcctc ggcggcgatc agcgcgctga tcaggtcgtc
     1801 gcgcggcgcc ccacgccgct cggcggtcag gtcgcgcgtg tagcggccga cgaagcgtcc
     1861 cgcctccagc gcctcagccc acgcctcctc cgaccgtttc ggcgccatca ggcggccggt
     1921 cagctcaaag gcggcgcgga acgcctcgcg gtcgtcggtc gggatgccga tgatctcgct
     1981 cgcgacgatg atcggcacgt ggaaggcgaa gtcggtg
//
LOCUS       DATAJL010000935         1754 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_75897,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000935 DATAJL010000000
VERSION     DATAJL010000935.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_75897"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..398
                     /locus_tag="VHN39_17645"
     CDS             <1..398
                     /locus_tag="VHN39_17645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818220.1"
                     /translation="PPQPLNIHQPPPLTPPPLAPAPPPPSEVSPEWRVRPVGPPGDLD
                     AAPFTLGRAGLRQARARPTCKTHGWDRPLSCPPDDAELRAAKSDPAKDSRTAGFEAEG
                     RYKRAMKTYKELPGDAGYPGLACAILHKC"
     gene            complement(569..>1754)
                     /locus_tag="VHN39_17650"
     CDS             complement(569..>1754)
                     /locus_tag="VHN39_17650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HEX2818221.1"
                     /translation="TRGAHPRSMMNVRKAALLAGASLMLAAAACSDPAPKSTTTTTTA
                     AAATPPAPVAVASTRNYPAPDVPTPPPLDDIPMIVESISPVAPAIDKADWTAPPVTPQ
                     ARKNALLRAEVLLARAHFSPGVIDGQDGGNLQNAIGAFETAHGLPVDGKMDGEVWAAL
                     AKDTQPALTDYVITAEDVKGPFLAKIPTDMAEMAKLDALGFTSPVEELAERFHMDEAL
                     LKTLNPTVDFAVAGSKIVVAALGPDRLKAPVTRIEVDKTKRQIRAYGADVLLAVYPAT
                     VGSTERPAPEGDWAVRTVASNPTYTYDPSRLTFGKTGEGKLTIKPGPNNPVGSTWIDL
                     TKDTYGIHGTPDPRLVGKTASHGCVRMTNWDVRQLSQAVKKGTKVAFVGVEQATAPKT
                     SG"
BASE COUNT          243 a          597 c          616 g          298 t
ORIGIN      
        1 gcccgccgca gcccttgaac atccatcaac cgccgcctct gacgccaccg cccctggcgc
       61 cggcgcctcc gccgccgtcc gaggtttcgc cggagtggcg ggtcaggccg gtcggcccgc
      121 ctggggacct ggacgcggcg cccttcaccc ttggccgcgc aggactgcgg caggcgcgcg
      181 cccggccgac gtgcaagacc catggctggg accgtccgct gagctgtccg cccgacgacg
      241 ccgaacttcg ggctgcgaaa tcagacccgg ccaaggactc caggacggcg ggattcgagg
      301 ccgagggccg ctacaagcgg gcgatgaaga cctacaagga actgcccggc gacgcgggct
      361 accccggcct cgcctgcgcg atcctccaca agtgctgagg cgccctggta tcccgattcc
      421 gaagttcgcc agagcttgcg gctggcgccg gacgaacttc ggaatcgatg aggacaccag
      481 caagctcatg ttttcctagt gtgtttcttt ggatttgaag ttcgctcggc gcctagcctt
      541 gaatgcggcg aacttcaaat ccagcacact agccggaagt cttcggcgcc gtggcctgct
      601 ccacgcccac gaacgccacc ttggtcccct tcttcaccgc ctggctgagc tggcggacgt
      661 cccagttggt catgcgcacg cagccgtggc tggcggtctt gccgaccagg cgcgggtctg
      721 gcgtgccgtg gattccatag gtgtccttgg tcaagtcgat ccaggtggag cccaccggat
      781 tgttcggccc gggcttgatg gtgagcttgc cctcgccggt cttgccgaag gtcagccgcg
      841 agggatcgta agtgtaggtc gggttggacg cgaccgtgcg caccgcccag tcgccctccg
      901 gcgccggacg ctcggtcgag cccaccgtgg ccggatagac cgccagcagg acgtcggcgc
      961 cataggcgcg gatctggcgt ttggtcttgt cgacctcgat gcgggtgacc ggcgccttca
     1021 gccggtcggg gccgagcgcc gccaccacga tcttgctccc ggccacagcg aaatcgacgg
     1081 tggggttgag cgtcttcagg agcgcctcgt ccatgtggaa ccgctcggcc agttcctcta
     1141 ccgggctggt aaagccgagc gcgtccagct tggccatctc ggccatgtcg gtggggatct
     1201 tggccaggaa cgggcccttc acgtcctcgg cggtgatcac gtagtcggta agcgcgggtt
     1261 gcgtgtcctt cgcgagcgcc gcccagacct cgccgtccat cttgccgtcc accggcaggc
     1321 cgtgggccgt ctcgaaggcg ccgatggcgt tctgcagatt gccgccgtcc tggccgtcga
     1381 tgacgccggg cgagaaatgc gcgcgggcca gcagcacctc ggcgcgcagc agggcgttct
     1441 tcctggcctg gggcgtcacc ggcggggcgg tccagtcggc cttgtcgatg gccggtgcga
     1501 ccggcgagat cgattccacg atcatcggaa tgtcatccag cggcggcggc gtgggcacgt
     1561 cgggcgcggg gtagttccgg gtcgacgcca cggcgaccgg cgcgggtggc gtcgccgcgg
     1621 ccgccgtcgt ggtcgtcgtc gtgcttttcg gcgccggatc ggagcaggcg gcggcggcaa
     1681 gcatcaggga agcgccggcg agcagggccg ccttgcggac gttcatcatg gacctcgggt
     1741 gggcgccgcg cgtt
//
LOCUS       DATAJL010000936         3875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102355,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000936 DATAJL010000000
VERSION     DATAJL010000936.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3875
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102355"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..954
                     /locus_tag="VHN39_17655"
     CDS             <1..954
                     /locus_tag="VHN39_17655"
                     /inference="COORDINATES: protein motif:HMM:NF016027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2818222.1"
                     /translation="LRRMDEILVRNFRIFQEAVEAQPYDLVIADEGWEVDHFWHEHPG
                     LKRAPLVWMTDFVGFAPMSEGGAREALLIADYNAEMIGHVEANPGLRDRAIFVGNPAD
                     VVDDRLGPDLPGRRAWTEDRFEFGGYILGDDVPMPADKVELRARLGLRPDETVCVVAV
                     GGSGVGLPLIRRILAAIPLAQARRPGLRTIVVTGPRLAAGQFATMPGVEIRGYEPELP
                     KLLAACDIALVQGGLSTCMELAATRTPFLFFPLRHHFEQNVHVRRRLEAYGAGRMLTF
                     AEATPETIAAALDAELDRRVAWKDVERDGAQRTAHMIAELF"
     gene            complement(971..1162)
                     /locus_tag="VHN39_17660"
     CDS             complement(971..1162)
                     /locus_tag="VHN39_17660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818223.1"
                     /translation="MAGRWPLVPRDRREEQLDFELWLAAERVPPGPVKEMTRVVAPII
                     RSIARLRHRPGAVHRKPGG"
     gene            1222..2355
                     /locus_tag="VHN39_17665"
     CDS             1222..2355
                     /locus_tag="VHN39_17665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818224.1"
                     /translation="MRQARWNADPKAEQPRGMFRDSLAGWTNDDVLQTEAAREALRAK
                     HPAALRVLDWPELRGLFAVYDPPATRDGRSDRRLGVLSVGVATLGLLLAIASPLVIGA
                     ERVIEMAAAAVALTGLAIMGVYKFGAGSKARSLAHRFGAERVRALYFQAVVNNLGLAA
                     RAMADDAALGVWTSARARALGDLPEPEDLPGQIPKLAEPVDDDAETWVSPAWSTSPDP
                     PEPSAELKLLLSLLRGQRLDGQINYLERKLSDSLGAPGQRAGLVRGLSRLLLGAAVVT
                     GLMAAVLVVAMGRKLGGADVRLALEVTVGAIVASVALGVVNDDQLLAGDAKRYAAYFA
                     ALSKARFRFDTGGPAEKLAALREVEIVSYRDLREFVGSHWRSR"
     gene            2468..3541
                     /locus_tag="VHN39_17670"
     CDS             2468..3541
                     /locus_tag="VHN39_17670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818225.1"
                     /translation="MTRGAISAAAMLAVLLAGPAFAQSQGQASQGQASPGQAPAPKAP
                     SPKELARNFEGVWTNATVTRLERPANFSQLVVPKEQADAVAKATSARLAAANGESDLS
                     KGAFKDENATAGYNSFWIDSGDGLMRVRGEARSSFITSPADGKMPFRNRAKSLALMTR
                     DGVEYQSGNGAYAGPEDLPLRERCLISQSDAGGPVMLNAIYNNNYSFFVTPGYFVIDL
                     EMNHDVRIAPIFASAAKARASHLPAGIRPWLGDTVAWWEGDTLVTETKNVNPIQEGRT
                     LTPVSAQGTVTERFTRIARNELLYRFTVEDPAHYTQAWSGEYSFKPAKGQIYEYACHE
                     GNYAMEGILRGARLKEAAANGGK"
BASE COUNT          618 a         1346 c         1346 g          565 t
ORIGIN      
        1 ctgcggcgca tggacgagat cctggtccgc aacttccgga tcttccaaga agccgtcgag
       61 gcccagccct acgacctggt catcgccgac gaaggctggg aggtagacca cttctggcac
      121 gagcaccccg ggctcaagcg cgcgcccctg gtctggatga ccgacttcgt gggcttcgcg
      181 ccgatgtcgg agggcggggc ccgcgaggcc ctgctcatcg ccgactacaa cgccgagatg
      241 atcggccatg tggaagccaa ccccggcctc cgcgaccgcg cgatcttcgt cggcaacccc
      301 gccgacgtcg tcgacgaccg cctgggcccc gacctgccgg ggcgcagggc gtggactgag
      361 gaccgcttcg agttcggcgg ctacatcctg ggcgacgacg tgcccatgcc cgccgacaag
      421 gtcgaactgc gcgcccggct gggactgcgg cccgacgaga cggtgtgcgt ggtggcggtg
      481 ggcggctccg gcgtcggcct gccgctgatc cgccggatcc tcgcggccat tcccctggcc
      541 caggcccggc gccccggcct gcggaccatc gtggtgaccg gaccgcgcct ggcggccgga
      601 cagttcgcga ccatgccggg agtcgagatc cgcggctacg agccggagct gccgaagctg
      661 ctggcggcct gcgacatcgc cctcgtccag ggcgggctct ccacctgcat ggagctggcc
      721 gccacgcgca cccccttcct gttcttcccg ctccgccatc acttcgagca gaacgtccac
      781 gtgcgccgcc gcctggaggc ctatggcgcc ggccgcatgc tcaccttcgc cgaggccacg
      841 ccggagacca tcgccgcggc cctggacgcc gagctcgacc gccgcgtcgc gtggaaggat
      901 gtcgaacgcg acggcgccca gcgcaccgcc cacatgatcg ccgagctgtt ctgagggtcg
      961 cgccaggacc ttagccgccg ggcttccgat gcaccgcgcc cggccggtgg cgcaggcgcg
     1021 cgatggaccg gatgatcggc gccaccaccc gggtcatctc cttgaccggc cccggcggga
     1081 cccgctccgc cgccagccac agctcgaaat ccagctgctc ctcgcgccgg tcgcgcggga
     1141 cgagcggcca tctgccggcc atcgcgctat actgtcttcg agaggtcgtg gtgggacgac
     1201 ggtctttggg ggacgaggac gatgaggcag gccaggtgga acgccgatcc caaggcggag
     1261 cagcctcgcg gcatgttccg cgactcgctg gccggctgga caaacgacga cgtcctgcag
     1321 acggaggccg cgcgcgaggc gctgcgggcg aagcacccgg cggcgctgcg tgtgctggac
     1381 tggcccgaac tgcgaggatt gttcgccgta tatgatccgc cggccacgcg cgacggccgc
     1441 agcgaccgcc gcctgggcgt gctgtcggtc ggcgtggcga cgctgggcct gctgctggcg
     1501 atcgcgtcac cgctggtcat cggcgccgag cgggtgatcg agatggcggc ggccgccgtg
     1561 gcgcttacgg gcctggcgat catgggcgtc tacaagttcg gggcgggatc gaaagcgcgc
     1621 tccctggccc accggttcgg agccgaacgg gtcagggcgc tgtacttcca ggcggtggtc
     1681 aacaatctcg gcctggcggc gcgcgccatg gcggatgatg cggcgctggg cgtttggacg
     1741 tcggcgcggg cgcgggcgct cggcgacctg cctgagcccg aggacctgcc ggggcagatc
     1801 ccgaagctgg cagaacctgt cgacgacgac gccgagacct gggtgtcgcc ggcgtggtcg
     1861 acgtcgccgg acccaccgga gccgtccgcg gagctgaaac tgctgctgtc gctgctgcgc
     1921 gggcagcggc tggacgggca gatcaactat ctggagcgca agctcagcga ctcgctgggg
     1981 gcgcctggcc agcgggcggg gctggtcagg ggcctgagcc ggctgctgct gggcgccgcg
     2041 gtggtcaccg gcctgatggc cgcggtgctg gtcgtcgcga tgggccggaa gttgggcggc
     2101 gccgacgtga ggctcgccct cgaagtgacg gtgggcgcca tcgtcgcctc cgtcgccctg
     2161 ggggtggtca acgacgatca actgctggcg ggggacgcca agcggtatgc cgcctatttc
     2221 gccgccctct ccaaggccag gttccggttc gacacgggcg gcccggccga gaagctggcc
     2281 gccctgcgcg aggtggaaat cgtcagttac cgcgacctgc gcgagttcgt gggcagccac
     2341 tggcgatcgc ggtagtcgct gcggcgactc tcacgccgtg gctatcaatc gcggctggag
     2401 agagcgtaat tacgcctgag gctctgcaaa gtgctggcgg agagcgaagg ccgaggagga
     2461 cgatgcgatg acaagaggcg ccatatctgc ggccgccatg ctggccgtgc tcctggccgg
     2521 cccggccttc gcccaatcac agggccaggc ctcacagggc caggcgtcac cgggccaggc
     2581 gcccgcaccc aaggccccct ctcccaagga actggcgcgc aatttcgagg gggtctggac
     2641 gaacgcgacc gtcacacggc ttgagcgacc cgcaaacttt tcccagcttg tcgtcccgaa
     2701 ggaacaggcg gacgccgtgg cgaaggcgac gagcgcacgt ctcgcagcgg cgaacgggga
     2761 atcggatctc agcaagggcg ccttcaagga cgagaacgcc acggccggat acaattcgtt
     2821 ctggatcgat tccggcgacg ggctgatgcg cgtccgcgga gaagcgcggt cctccttcat
     2881 caccagcccg gccgacggga agatgccctt ccgcaatcgc gcgaaaagcc tggccctcat
     2941 gacccgggac ggggtcgagt atcaatccgg aaatggcgcc tacgcgggtc cggaggatct
     3001 tccgctccgc gagcgttgcc tgatctcgca gagcgacgcc ggcgggccgg tcatgctcaa
     3061 tgcgatctac aacaacaact acagcttctt cgtgacgcca ggctatttcg tgatcgacct
     3121 ggagatgaac cacgacgtcc ggatcgcccc gatcttcgcc tccgccgcaa aggcccgcgc
     3181 ctcgcacctg cccgccggga tccggccctg gctcggcgat acggtggcct ggtgggaagg
     3241 cgacacgctt gtcaccgaga cgaagaacgt gaaccccatc caggaagggc ggaccctgac
     3301 gcccgtgtca gcgcagggca cggtgacgga acggttcacg cggattgcca ggaacgaact
     3361 gctctatcgg ttcacggtcg aggatccggc gcactacaca caagcctggt cgggcgagta
     3421 ttccttcaag cccgccaaag ggcagatcta cgaatacgcc tgccatgagg ggaactacgc
     3481 gatggaaggc atccttcgcg gcgcccggct caaggaagcg gccgccaacg gcggaaagtg
     3541 atcgggtagc gcctgctccg cgccgccagc caagccgtcc caaacaccgc ctattcgtaa
     3601 gagccggcgc agtccgactt ggcggcggcg accgctcagc gccatgagct gaccttcaac
     3661 gtcccgccga aagcggacac ccccggcgga cgacaaacca gcgctatgga cctatgtcgc
     3721 ggcggatgcg ggtcctcctc gcctaatccc gccccgtagt ccccgggtat ccgatgatcg
     3781 tcgagagctc cggcgcgccg ctcacagcat aggacgcaag cttgccgctc atcaccgccc
     3841 cctccaggct gccgacgttg agcccggtgt agatc
//
LOCUS       DATAJL010000937         2994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102390,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000937 DATAJL010000000
VERSION     DATAJL010000937.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2994
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102390"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..219
                     /locus_tag="VHN39_17675"
     CDS             <1..219
                     /locus_tag="VHN39_17675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008258679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEX2818226.1"
                     /translation="TVQNLRGRLGLPDSATPHALRHSFATHLLGAGADLRSIQELLGH
                     ASLSTTQRYTQVDAAALLSAYSKAHPHA"
     gene            complement(229..1329)
                     /locus_tag="VHN39_17680"
     CDS             complement(229..1329)
                     /locus_tag="VHN39_17680"
                     /inference="COORDINATES: protein motif:HMM:NF014954.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase"
                     /protein_id="HEX2818227.1"
                     /translation="MSDPGFPTTVEAMTPAWLTEVLRADGLLGEGVVTGFSSEPLAVG
                     VGFMSALRRLTLECEGTPAGMPCTIIAKLPPLDPGARTIDEAFNFYEKEVGFYQQMAP
                     STPMRAPRAHYSAFDPKSRDFILLLEDLAPSAIGDQVLGLTFDEAAMAVDALARLHAR
                     WWGDPLLDELDWLLAINSVEFKRLTEICAQCWPAVLEFVGDTMPPEVRVAGERLCTEM
                     PRMLDQAWERPRTMAHGDYRADNMFFRPGCDQVPFAVADWQIVFKGNAVFDLAYLLTG
                     SLDIEVRRRHERELLAIYHARLVAEGVEGYSLEACLDDYRFWVMLGLAWPVVAIGTLD
                     TANERGLALFKCWIERAMAAVVDWKAGEMLPN"
     gene            complement(1416..1982)
                     /locus_tag="VHN39_17685"
     CDS             complement(1416..1982)
                     /locus_tag="VHN39_17685"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX2818228.1"
                     /translation="MELVLVRHGLPERTDATADPPLTPEGHDQAARVARWLEPDGIQA
                     TYSSTMLRAVQTAEPFIALTGHALAQHDGIVEFDRGSGAYVPMEVLKREDYAAWKAMA
                     DGSHDIDIDAFQKMVVTALEEIIVANPGRKVAVFCHGGVVNVWTAHVLGMAPRLFFEP
                     GYTSVHRYMCASTGQRNVVSLNERAHLR"
     gene            complement(2199..2555)
                     /locus_tag="VHN39_17690"
     CDS             complement(2199..2555)
                     /locus_tag="VHN39_17690"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2818229.1"
                     /translation="MALEDHLSEALAAYDAAEVARLWDDAFVFVNPDGRMAKKAQRLA
                     GIRRPDAKAGPPLTSHNDSVDVQYEDANVAVVLVRSTWRQGDRQLGQPYLATHVWIRR
                     GPDWKLLSAQVAQLAP"
     gene            complement(2626..2907)
                     /locus_tag="VHN39_17695"
     CDS             complement(2626..2907)
                     /locus_tag="VHN39_17695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818230.1"
                     /translation="MILAAAAFATSLVIASPPTIAPAPNLYRSPAAGCQYIARRVTED
                     QQEPLQKLGRLPNGVLMYAVERKIGGCAVPTPVGYHPPSLPGKADQPGR"
BASE COUNT          497 a         1021 c         1015 g          461 t
ORIGIN      
        1 accgtgcaga atctgagagg ccgcctcggc ctcccggaca gcgccacccc acatgcgctg
       61 cgccactcct tcgccacgca cttgctgggc gccggcgccg acctgcgctc gatccaggaa
      121 ctcctgggcc acgcctcgct atcgacgacc cagcgctaca cccaggtgga cgccgcggcc
      181 ctgctcagcg cctattccaa agcgcatccg cacgcctagg gcccacggct agttgggcag
      241 catctcgccg gccttccagt cgacgacggc ggccatggcg cgttcgatcc agcacttgaa
      301 gagggccagg ccgcgttcgt tggcggtgtc cagggtgccg atcgccacca ccggccacgc
      361 caggcccagc atcacccaga aacggtagtc atcgaggcag gcctccaggc tgtagccctc
      421 gaccccctcg gccacgagcc gggcgtgata gatggccagc agttcgcgct cgtggcgccg
      481 gcgaacctcg atgtcgaggc tgccggtgag cagataggcc aggtcgaaga cggcgttacc
      541 cttgaagacg atctgccagt cggcgaccgc gaaggggacc tgatcgcagc ccgggcggaa
      601 gaacatgttg tcggcgcggt agtcgccgtg ggccatggtg cgcggccgct cccaagcttg
      661 gtcgagcatg cgcggcatct cggtgcaaag ccgttcgccg gccacccgca cctccggcgg
      721 catggtatcg cccacgaact ccagcaccgc cggccagcac tgagcgcaga tctcggtcag
      781 ccgcttgaac tccacggaat tgatcgcgag caaccagtcg agctcgtcga gcagcgggtc
      841 gccccaccag cgggcgtgca gccgggcgag cgcgtccacc gccatcgccg cctcatcgaa
      901 agtcaggccc agcacctggt cgccgatcgc cgagggcgcg aggtcttcca ggagcaggat
      961 gaaatcccgg ctcttcgggt cgaaggcgct gtagtgcgcg cgcggcgcac gcatcggcgt
     1021 cgagggcgcc atctgctgat agaagccgac ttccttctca tagaagttga aggcctcgtc
     1081 gatggtccgc gcaccggggt ccagcggcgg cagcttggcg atgatggtgc agggcatgcc
     1141 ggcgggcgtc ccctcgcact ccagggtcag gcggcgaagc gcgctcatga agccgacgcc
     1201 gacggccagc ggttcggagc tgaaaccggt gaccacaccc tcgccgagga ggccgtccgc
     1261 gcgcaggacc tcagtcagcc aggccggcgt catcgcctcg accgtggtcg gaaatccggg
     1321 atcgctcatg ccagccccca agcgtttggg ccgagcctat gggttttgac ggcgctgtcg
     1381 agaaatcgtc ccgtgcactg acaaagggcg gcggactatc tgagatgggc gcgctcgttc
     1441 aggctgacca cgtttcgctg tccggtgctg gcgcacatgt agcgatggac gctggtgtag
     1501 ccgggctcga agaacagcct gggcgccatg ccgagcacat gcgccgtcca gacgttgacg
     1561 acgcccccgt ggcagaagac cgcgaccttg cggcccggat tggccacgat gatctcctcc
     1621 agcgcggtca cgaccatttt ctggaaggcg tcgatatcga tatcgtggct gccgtcggcc
     1681 atggccttcc aggccgcgta gtcctcccgc ttcagcacct ccatcggcac ataggcgccg
     1741 gagccgcgat cgaactcgac gatgccatcg tgctgggcga gcgcatggcc ggtgagcgcg
     1801 atgaacggct cggcggtctg cacggcgcgc agcatggtcg aggaataggt ggcctgaatg
     1861 ccgtcgggct ccagccagcg cgcgaccctg gcggcctggt cgtggccttc gggcgtcagc
     1921 ggcgggtcgg cggtggcgtc ggtccgttcc ggcagtccgt ggcggaccag cacaagttcc
     1981 atcgcgattc ccccggggac gacgccgaag cgcctagcag agggtcaccg ccacgcctag
     2041 tgtcccgatt ccgaagttcg caagagcttg cggcaggcgc cggacgaact tcggaatcga
     2101 taaggacact aggaagccta tgtccctagt gtgcttcttc ggatctgaag ttcgctctga
     2161 ggctggccct gaatgaggcg aacttcagat ccagcacact agggcgcaag ctgagcgacc
     2221 tgggccgaga gcagcttcca gtccggcccg cgccgaatcc agacgtgggt cgccagatag
     2281 ggctggccga gctgcctgtc gccctgacgc caggtggatc gcaccagcac caccgcgacg
     2341 ttggcgtcct cgtactgcac atcgacgctg tcgttgtggc ttgtcagcgg cggaccggcc
     2401 ttggcgtccg gccgccggat tccggccagc cgctgcgcct tcttcgccat tcgcccatca
     2461 gggttcacga agacgaaggc gtcgtcccag agccttgcga cctcggcggc gtcataggcg
     2521 gccagggctt ccgaaagatg gtcctcgagc gccatgaacc gcgcaggcga agcagaggcg
     2581 ttggccaacg gcaggagcgc gatcagcagc gccggaagaa gcgttctacc gcccaggctg
     2641 atccgccttt ccgggcagcg acggcgggtg atagcccacc ggcgtcggca cggcgcagcc
     2701 gccgatcttc cgctccacgg cgtacatcag cacgccgttg ggcaggcggc cgagcttctg
     2761 caggggctcc tgctgatcct cggtcacccg gcgcgcgatg tactggcagc cggcggccgg
     2821 cgaccgatag aggttcggcg ccggcgcgat cgtcggcggc gaggcgatca caaggctggt
     2881 cgcgaatgcc gcggcggcca ggatcatggc gcgacctcca cggcgcagat gcgggcgtct
     2941 gggtagtccg cccagcgcag cagccgcttg gggggccgat cgccggagcg gtag
//
LOCUS       DATAJL010000938         2650 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_89693,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000938 DATAJL010000000
VERSION     DATAJL010000938.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89693"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..280)
                     /locus_tag="VHN39_17700"
     CDS             complement(<1..280)
                     /locus_tag="VHN39_17700"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="catalyzes the hydrolysis of a monocarboxylic acid
                     amid to form a monocarboxylate and ammonia; Derived by
                     automated computational analysis using gene prediction
                     method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX2818231.1"
                     /translation="MSHPVLLSTLFMAVVAAGTVRAAPYRVEETSIAQLKADLAAGRV
                     TSVELVRLYEQRIAKLNPKLHAVIALNPDAPAQAAASDAARKTKAPLGP"
     gene            complement(280..1560)
                     /locus_tag="VHN39_17705"
     CDS             complement(280..1560)
                     /locus_tag="VHN39_17705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2818232.1"
                     /translation="MGMRISSVVIAAVAAWAVATAAEARTVIVTAERLLDVATGKYIE
                     KPAVVITDGRIEAVQTQGQADYPTGAERVDLPGVTLLPGLIDMHVHLTSSPLFGGYNR
                     LQYTDSFWPIIGVTHAKATLEAGFTTVRNVGSKDFEDVGLRQAIDAGFIPGPRIVTAT
                     YAIGSTGGHCDSTFFPPSMKQRGDAVIDSPDEGRKMVRQLHKYGAQVIKICATGGVFS
                     HGDTPGAQQLTLEEIKAIVDEAHATGMRVAAHAHGASGIKAAILGGVDTIEHASLVDD
                     EGIKLAIQHGSYFGMDIYNTDYTQAEGKKNGVQEENLQKDRDIGDIQRENFRKALKAG
                     VKMIFSSDAGVYPHGTNAKQFATMVRYGATPLQAIRTATITAAEALDRVKDVGQATPG
                     HYGDLVGVKGDPLVDVTLLEHPVFVMKGGEVVKR"
     gene            1668..2582
                     /gene="argB"
                     /locus_tag="VHN39_17710"
     CDS             1668..2582
                     /gene="argB"
                     /locus_tag="VHN39_17710"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018080788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEX2818233.1"
                     /translation="MTDDSQSQGWATAKTLAEALPYIQRYDRATVVIKYGGHAMGEAE
                     VARLFAADAVLLKMLGVHPVIVHGGGPQISAMLERAGVKSTFIDGLRVTDEATMEVAE
                     MVLSGAINKEIANWITLAGKEADVRGVGLSGKDARLITVEKVTRTKKDPDSEIEKMVD
                     LGFVGDPKRVDPKLIEALIYADEDYIPVIAPIGVSEDGQTYNINADTVAGALAGALNA
                     KRMLLLTDVAGVLDKNGELIRQMTVAEAKAAIRDGVATGGMIPKLETAIAAVQAGVEA
                     VVIIDGRRPHAMLTELFTEHGAGTLVRA"
BASE COUNT          422 a          896 c          885 g          447 t
ORIGIN      
        1 agggccctag cggggccttc gtcttgcggg ccgcatccga ggccgcggcc tgggccggcg
       61 cgtcaggatt gagcgcgatc accgcgtgga gcttgggatt gagcttggcg atccgctgtt
      121 cgtagagccg aaccagttca accgaagtga cccgaccggc ggcgagatcg gccttcagct
      181 gggcgatcga cgtctcctcc acccggtagg gcgcggcgcg aaccgtcccc gccgccacga
      241 cggccatgaa caaggtggag agcaggactg gatgtgacat caccgcttca ccacctcccc
      301 gcccttcatc acgaagaccg ggtgctccag cagggtcacg tccaccagcg gatcgccctt
      361 cacgccgacc aggtcgccgt agtggccggg cgtcgcctgg cccacgtcct tgacccggtc
      421 cagcgcctcg gcggcggtga tcgtcgcggt gcggatcgcc tgcagcgggg tcgccccata
      481 ccgcaccatg gtggcgaact gcttcgcatt ggtcccgtgc ggatagaccc ccgcatcgga
      541 cgagaagatc atcttcaccc cggccttcag cgccttacgg aagttctccc gctggatgtc
      601 gccgatgtcg cggtccttct gcaggttctc ctcctggacg ccgttcttct tgccctctgc
      661 ctgggtgtag tcggtgttgt agatgtccat gccgaagtag ctgccgtgct ggatggccag
      721 cttgatgccc tcgtcgtcca ccaggctggc gtgctcgatg gtgtccacgc cgcccaggat
      781 cgcggccttg atgccgctgg cgccgtgggc gtgggcggcg acccgcatgc cggtggcgtg
      841 ggcctcgtcg acgatcgcct tgatctcttc cagggtcagt tgttgcgcgc cgggcgtatc
      901 gccgtggctg aacaccccgc cggtggcgca gatcttgatc acctgggcgc cgtatttgtg
      961 gagctggcgg accatcttgc ggccctcgtc ggggctgtcg atcaccgcat cgccccgctg
     1021 cttcatggac ggcgggaaga aggtcgaatc gcagtgcccg ccggtcgagc cgatggcgta
     1081 ggtggccgtg acgatccgag gccccggaat gaatcccgcg tcgatggcct ggcgcagccc
     1141 cacgtcctcg aagtccttcg agcccacgtt gcgcacggtc gtgaaacccg cctccagcgt
     1201 cgccttggcg tgggtcacac cgatgatcgg ccagaagctg tcggtgtact gcagccggtt
     1261 gtagccgccg aacagcggcg atgacgtcag gtggacgtgc atgtcgatca gcccgggcag
     1321 cagcgtcacg cccggcaggt ccacccgctc ggcgccggtc gggtagtcgg cctgcccttg
     1381 cgtctgcacc gcctcgatcc gcccgtcggt gatcaccacc gcgggttttt cgatgtattt
     1441 gccggtggcc acgtccagca gccgctcggc cgtcacgatc accgtcctgg cctcggccgc
     1501 cgtcgcgacg gcccaggcag ccaccgccgc gatcacaacg ctcgaaatcc gcattcccat
     1561 ccccgaacag aagcttgagc tgcaggctta gcatgaccgc ccaaaggtga cagggggcgc
     1621 gctgtccgct atcggagcgc tccgactttc agcgcttcga gacgcccgtg actgacgata
     1681 gccaaagcca gggatgggcg accgccaaga cgctggccga ggccctgccc tatatccagc
     1741 gctatgaccg cgcgaccgtg gtcatcaaat acggcggcca cgccatgggc gaggccgagg
     1801 tcgcccggtt gttcgccgcc gacgcggtgc tgctgaagat gctgggcgtc catccggtca
     1861 tcgtccatgg gggcggcccg cagatctccg ccatgctgga acgcgccggg gtgaagtcga
     1921 ccttcatcga tggcctcagg gtcaccgacg aggccaccat ggaggtggcc gagatggtcc
     1981 tgtccggcgc gatcaacaag gagatcgcca actggatcac cctggccggc aaggaagccg
     2041 atgtgcgcgg cgtgggcctg tcgggcaagg atgcgcggct gatcaccgtc gaaaaagtca
     2101 cccgcaccaa gaaggacccg gactcggaga tcgagaagat ggtcgacctg ggcttcgtgg
     2161 gcgatcccaa gcgggtcgat ccgaagctga tcgaggcgct gatctatgcc gacgaggact
     2221 acatcccggt gatcgccccg atcggcgtct ccgaggacgg ccagacctac aacatcaacg
     2281 ccgacaccgt ggccggcgcg ctggccggag ccctcaacgc caagcgcatg ctgctgctca
     2341 ccgacgtggc cggcgtgctg gacaagaacg gcgaactgat ccgccagatg actgtcgccg
     2401 aggccaaggc ggcgatccgc gacggcgtcg ccaccggcgg catgatcccc aagctggaga
     2461 ccgccatcgc cgcggtacag gcgggggtcg aggcggtggt gatcatcgac ggacgccgcc
     2521 cccacgccat gctcaccgag ttgttcaccg aacacggcgc gggcacattg gtgcgagcgt
     2581 gatggggtgc gggcgtgatg gggtgtgggc gtgaccgccg acctgtccca catcgacgtc
     2641 tggctgtttg
//
LOCUS       DATAJL010000939         4371 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_76013,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000939 DATAJL010000000
VERSION     DATAJL010000939.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4371
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76013"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..343)
                     /locus_tag="VHN39_17715"
     CDS             complement(<1..343)
                     /locus_tag="VHN39_17715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818234.1"
                     /translation="MKLSILLASAALVLSAGAASADSMGAKSTTICLDSGGHKAAVHC
                     KTQDASRLSSQEDICICPAATLQVTAPLCAPGVQPPGESAAYEQARLKAVNHGSLVDA
                     SWQGKPMCVAPH"
     gene            499..711
                     /locus_tag="VHN39_17720"
     CDS             499..711
                     /locus_tag="VHN39_17720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003166055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod C-terminal
                     domain-containing protein"
                     /protein_id="HEX2818235.1"
                     /translation="MDPISTARYGMMAATQQLNASANRIAGGGDVDYATEAVGQIEAK
                     QAFKANVGVIKVADQMWQSLLDLQKT"
     gene            complement(723..1562)
                     /locus_tag="VHN39_17725"
     CDS             complement(723..1562)
                     /locus_tag="VHN39_17725"
                     /inference="COORDINATES: protein motif:HMM:NF042488.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6644 family protein"
                     /protein_id="HEX2818236.1"
                     /translation="MSSMNLEHFFPQAKSWVDTLGDIPPGSWVKGPTFGYASWEVGHI
                     LSLIMIGGTTILMNLRLLGAGVTQEKPADIYRNLRVLQNVGVIGIVVTGLLIGAANAT
                     KLYDSSAFTVKMMALLSGVILTYGVSRPVAAANGAVALMPKIWFAIGGAIFLAGLWMF
                     ATTDLIDVGIYHVLTAAALILIPVTRGRLRWAYIAGMVALIAAQFVHTHFVIKADDYA
                     HLDPVNKIYTALYAVWIVGTALITLFRGRGEEGGPLTKLVAYSTMLVWVLGAAAGRWI
                     AFQ"
     gene            complement(1559..2200)
                     /locus_tag="VHN39_17730"
     CDS             complement(1559..2200)
                     /locus_tag="VHN39_17730"
                     /inference="COORDINATES: protein motif:HMM:NF042488.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6644 family protein"
                     /protein_id="HEX2818237.1"
                     /translation="MIGAFLNWLEHTWGKGPTPDGQSFSELLLGSLNFWSLLEGTHLI
                     ALMLFAGTILVVDLRLLGVTFRKTKVSVISDAILPLTTFSFAFVVISGMGLLFAKPIF
                     YYHTIWFLVKMVFLALALLNIVVFHGRVQATQGTWDADETPPPAARMSAAASLILWTL
                     VIICGRYIPYNWYECGKPQPAFVNWVQQCKTSEKGEENMAGQRFDAKMWKAQP"
     gene            complement(2507..2968)
                     /locus_tag="VHN39_17735"
     CDS             complement(2507..2968)
                     /locus_tag="VHN39_17735"
                     /inference="COORDINATES: protein motif:HMM:NF039360.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6152 family protein"
                     /protein_id="HEX2818238.1"
                     /translation="MNFRRFIIPAAISAGLLAAASIGVTQAVAHHAFAAEFDGKAPVL
                     LRGKVVKVEWINPHAWVHVNVVGPDGTAVEWMVEGGTPNTLLRAGIDRNSLKVGTEIV
                     VRGYQSKDKACTPICKANGRDVTFPDGRKLFMGSSGTGAPKDGADATEAPK"
     gene            complement(3056..3952)
                     /locus_tag="VHN39_17740"
     CDS             complement(3056..3952)
                     /locus_tag="VHN39_17740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818239.1"
                     /translation="MIRTLVALALAGAVVGGQAQAQTAPAKAKPVAVKAAGKGAMAAY
                     HAPRGPDGKHPDLNGVWQAMNTANYNIEPHASSAALQMRPGPVVPVPAKDVLALGAVG
                     SVPAGLGVVEGGTIPYTPEALKQRDANKADWVHKDPEIKCYLPGVPRANYMALPFQIF
                     QSESATLIAYEYAGAVRNLQFKDPGPAPVDSWMGQSVAHWEGDTLVVVVTGMLDSTWF
                     DRAGNFHTGDLKVVERWTPTGPGVLRYEAEMTDPTIFTRPWKISMNLYKHVGEDARLQ
                     QFKCVEFVEELMYGHLRKEPLK"
     gene            4082..>4371
                     /locus_tag="VHN39_17745"
     CDS             4082..>4371
                     /locus_tag="VHN39_17745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007663289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02466 family protein"
                     /protein_id="HEX2818240.1"
                     /translation="MALRLLFPTPVYEASLSTDRNFENFRAELEAACQMLAAEDAAGR
                     AWCKINGYGGYTSYASLDDLPTRASVFGELKTKLDRHAQAFAKDLDFDLGGRR"
BASE COUNT          770 a         1427 c         1401 g          773 t
ORIGIN      
        1 tatgcggggc cacgcacatg ggcttgccct gccagctggc gtccaccagg ctgccgtggt
       61 tgaccgcctt caggcgggcc tgctcgtagg ccgcgctctc gcccggaggc tgcacgcccg
      121 gcgcacagag cggggccgtc acctgcaggg tcgccgcggg acagatgcag atgtcctctt
      181 ggctactgag gcggctcgcg tcctgcgtct tgcaatggac cgccgccttg tggccgccgc
      241 tgtcgaggca gatcgtcgtc gacttcgcgc ccatggagtc cgctgacgcc gcgccggcgc
      301 tcaagaccag ggccgcgctg gcgaggagga tcgaaagctt catcacagtt ctccgtttgc
      361 cccccaacac gccattgagc ctccaaagtg acgtgtgcgt caaccttccg gctcagcgga
      421 aaacggccgc caaagcttga cgttcgttca ccacgtcttc ttgcgatagc ttaaccgtgg
      481 agggcgcagc atggagccat ggacccgatc tcaaccgccc gttacggcat gatggccgcg
      541 acccagcagc tcaacgcctc ggccaaccgc atcgcgggcg gcggcgacgt cgactacgcc
      601 acagaggcgg tgggccagat cgaggccaag caggccttca aggccaatgt cggcgtgatc
      661 aaggtcgccg accagatgtg gcagtccctg ctcgacctgc agaagacctg aaactcgcca
      721 ccctactgga aggcgatcca gcgcccggcc gccgcgccca gcacccacac cagcatcgtg
      781 gaataggcca ccagcttggt cagcggcccg ccttcttcgc cgcggccgcg gaatagggtg
      841 atcagcgccg ttcccacgat ccatacggcg tacagcgccg tgtagatctt gttgaccggg
      901 tccaggtggg cgtagtcgtc cgccttgatg acgaagtggg tgtggacgaa ctgggcggcg
      961 atcagcgcga ccatgccggc gatataggcc cagcgcagcc ggccccgcgt caccgggatc
     1021 aggatcagag ccgccgccgt gagcacgtga tagatgccca catcgatcag gtctgttgtc
     1081 gcgaacatcc acagaccggc caggaagatg gcgccgccga ttgcgaacca gatcttgggc
     1141 atgagggcga cagcaccgtt ggccgcggcg accggacggc tgacgccata tgtcaggatg
     1201 acgccggaga gcagcgccat catcttcaca gtgaaggctg agctatcgta gagcttggtc
     1261 gcgttggcgg cgccgatcag gaggccggtc acgacgatcc cgatcacgcc cacgttctgc
     1321 aggaccctga ggttccgata gatatcggcc ggcttttcct gcgtcacgcc cgcgcccagc
     1381 aggcgcaggt tcatcaggat cgtcgtgccg ccgatcatga tcagcgacag gatgtggccg
     1441 acctcccagg aggcgtagcc gaacgtcgga cccttgaccc aactccccgg cgggatgtcg
     1501 cccagggtgt cgacccacga tttggcctgg gggaagaagt gctcgaggtt catgctgctc
     1561 atggctgggc cttccacatc ttcgcgtcga agcgctggcc ggccatgttc tcttcaccct
     1621 tctcggaggt cttgcactgc tgcacccagt tgacgaacgc cggctgcggc ttgccgcatt
     1681 cgtaccagtt gtagggaatg taccgaccgc agatgatcac aagggtccag aggatcaggg
     1741 aggcggcggc ggacatccgc gccgctggcg gcggcgtctc gtcggcgtcc caggtccctt
     1801 gcgtagcctg cacccttccg tggaagacca cgatgttgag cagggccagg gccaggaaga
     1861 ccattttcac gagaaaccag atcgtgtggt aatagaagat cggcttggcg aagagcaggc
     1921 ccattcccga gatcaccacg aaggcgaagc tgaaggtggt gagcggcagg atcgcgtcgc
     1981 tgatcaccga aactttggtc ttgcggaagg tcacccccag gagccgcagg tcgaccacca
     2041 gtatggtgcc ggcgaacagc atgagcgcga tgagatgcgt gccctcgagc aggctccaga
     2101 agttcagcga gcctagcagg agttcgctga aggactggcc gtccggcgtg ggacctttgc
     2161 cccaggtgtg ctccagccag ttcaagaatg cgccgatcat cgacgctgct ccgcagtccc
     2221 gttcataccg tccctctatc tccaggcggc gactcgaccg gcctatcaac gcctaagcac
     2281 acacgcaggc tgcgatgcgc caatcaagcc gcgtacggtt cccgcgccgt tacgcatcgg
     2341 ttacagcgcc gaattgcgag gttcgtcgag gcgaaaacat cgatcccgcc gcgcccgatg
     2401 cggcggacac ccacctcttc ggccgttccg cggtaacctg tcgtaacctg tccaggccag
     2461 aaaaaagggg ggcgatcagc ccccctttcc aaatctgtcg tagcgcctac ttcggcgctt
     2521 cggtggcgtc cgcgccatcc ttcggcgcgc cggtgccgga cgaacccatg aacagcttgc
     2581 ggccgtcggg gaaggtcacg tcacggccgt tggccttgca gatcggcgtg caggccttgt
     2641 ccttcgactg atagccgcgg accacgatct cggtgccgac cttcagcgag ttccggtcga
     2701 tgccggcgcg gagcagggtg ttgggcgtgc cgccctcgac catccattcc acggccgtgc
     2761 cgtcggggcc gaccacgttg acgtgcaccc aggcgtgggg attgatccac tcgaccttga
     2821 ccaccttgcc gcgaagcagc acgggggcct tgccgtcaaa ttcggcggcg aaggcgtggt
     2881 gagccacggc ctgcgtcacg ccgatcgaag cggcagccag gaggccggcg gaaatggcgg
     2941 cggggataat gaaacgacgg aaattcattg ggcgtctcca gcggaggatg ctgatcactt
     3001 tcatctccct gggacgcttt tgaggcgacc caggtcgaca gggcggattg gctcgttact
     3061 tcaggggttc tttccgaaga tgaccgtaca tcaattcttc gacgaattcg acgcacttga
     3121 actgctgcag gcgggcgtct tcgccgacgt gcttgtaaag gttcatgctg atcttccagg
     3181 ggcgggtgaa gatcgtcggg tcggtcatct ccgcctcgta gcggagcacg ccaggaccgg
     3241 tgggggtcca gcgctcgaca accttcagat cgccggtgtg gaagttgccg gcccggtcga
     3301 accaggtcga gtcgagcatg ccggtgacga ccaccaccag ggtgtcgcct tcccagtgcg
     3361 cgaccgactg gcccatccag ctgtcgaccg gcgccggacc cgggtccttg aactgcagat
     3421 tgcgcaccgc gcccgcatat tcataggcga tcagggtggc gctctcggat tggaagatct
     3481 ggaacggcag ggccatgtag ttggcgcgcg gcacgcccgg caggtagcac ttgatctcag
     3541 gatccttgtg gacccagtcg gccttgttgg cgtcgcgctg cttcagagct tcaggcgtgt
     3601 aggggatcgt gccgccctcg accacgccga ggcccgcggg caccgagccc accgcgccca
     3661 gcgcgaggac gtccttggcc gggacgggga ccacggggcc cgggcgcatc tgcagggccg
     3721 cgctcgaggc atgcggctcg atattgtagt tggcggtgtt catcgcctgc cagacgccgt
     3781 tcaggtcggg atgcttgcca tccggcccgc gcggagcgtg ataggccgcc atcgccccct
     3841 tgccggccgc cttcaccgcc acgggcttgg ccttggccgg cgctgtttgc gcttgcgctt
     3901 ggccgccgac cacagcgcca gccaaggcca gcgcaaccaa agtcctgatc atatttcgct
     3961 ccccaaatcc ccatctcgaa gccgatggag tcgtctttcg caaatttcta acggacgttt
     4021 ggacgaagcg ccagccgccc ttacttttga caatcgttct cagggcgatt agcgccgtcc
     4081 catggcgctg cgtctcctgt tcccgactcc ggtctatgag gcttcgctta gcacggaccg
     4141 gaacttcgaa aatttcaggg cggaattgga agccgcctgt cagatgctgg cggcggagga
     4201 cgccgccggc cgcgcctggt gcaagatcaa cggctatggc ggctatacgt cctacgcctc
     4261 gctggacgac ctgccgaccc gggcgagcgt cttcggcgag ctcaagacca agctcgaccg
     4321 tcatgcccag gctttcgcca aggacctcga tttcgacctg ggcgggcggc g
//
LOCUS       DATAJL010000940         2017 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_89816,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000940 DATAJL010000000
VERSION     DATAJL010000940.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89816"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..856)
                     /locus_tag="VHN39_17750"
     CDS             complement(<1..856)
                     /locus_tag="VHN39_17750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX2818241.1"
                     /translation="MSPAASRPPSLARRLVLLALSWSLATLILTAVGLGLLFQQSAVR
                     RLDQTLSDVIVTLQSGSTVDRGQVFAPLFTDERALRAYSGRYWEIAEPTADGKLRLWA
                     KSYSLFDSVMEAPPNLVARLRANPGKPISYPASGPKNERLRVRAQQNWLPGRKAPVIF
                     LAGEDRTSVDRDLRGFLTTSALLFIALGAGLVIAIFVQVRVGLRPLFRLQNEVSAVRR
                     GKQQRLAEIYPSELMPLAQELNALVEHNQHVVERQRTHVGNLAHALKTPISVMITEIG
                     VFNACARLP"
     gene            complement(867..1559)
                     /locus_tag="VHN39_17755"
     CDS             complement(867..1559)
                     /locus_tag="VHN39_17755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013268293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEX2818242.1"
                     /translation="MRILLVEDDPDLSRQLKMALADAGYAVDHAPDGEEAQFLGETEP
                     YDAVILDLGLPKVDGVSVLERWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKP
                     FHTEELLARLRALLRRSAGHAAPNLACGGLRLDPRAARASVNGEPLRLTSLEYRLLHY
                     MMMHQGRVISRTELVEHLYDQDFDRDSNTIEVFIGRVRKKIGSDRIETARGLGYRLTC
                     PEEELGGEAQAS"
     gene            complement(1599..1883)
                     /locus_tag="VHN39_17760"
     CDS             complement(1599..1883)
                     /locus_tag="VHN39_17760"
                     /inference="COORDINATES: protein motif:HMM:NF015378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEX2818243.1"
                     /translation="MKRPMLIAALLLVAAPVTTATAAQEPGREAPQAGAQVPLSSVLR
                     KIAQQYPGKQLNTTMGQSGGRAVYLVQWQLTNGRIVVFTVDAQTGQVVGQ"
BASE COUNT          309 a          677 c          705 g          326 t
ORIGIN      
        1 tgggcaacct ggcgcatgcg ttgaagaccc cgatctcggt gatcatcacc gagatcgggg
       61 tcttcaacgc atgcgccagg ttgcccacgt gggtgcgctg acgctccacc acatgctgat
      121 tgtgttccac cagcgcgttg agctcctggg cgagcggcat cagttcgctg ggatagatct
      181 cggccaggcg ctgctgcttg ccacggcgca ccgccgacac ctcgttctgt aggcggaaca
      241 ggggccgaag gcccacccga acctgcacga agatggctat gacaaggccc gcgccaagcg
      301 cgatgaacag cagcgcgctc gtggtgagga agccccgcaa gtcgcgatcg accgaggtgc
      361 ggtcctcgcc ggccaggaag atcaccggcg ccttgcgccc gggcagccag ttctgttggg
      421 ctcggacccg caggcgttcg ttcttcggac cgctggcggg gtagctgatg ggcttgccgg
      481 gattggcccg cagccgcgcc accaggttcg gcggcgcctc catcacgctg tcgaacagcg
      541 aataggactt cgcccagagg cgcagcttgc cgtcggccgt gggctcggcg atctcccagt
      601 agcggccgga ataggcccgg agcgcccgct cgtcggtgaa cagcggggcg aacacctggc
      661 ctcggtccac cgtggaaccg gattgcaggg tcacgatcac gtcgctgagc gtctgatcga
      721 ggcggcgcac cgccgattgc tggaacagca ggcccaggcc cacggcggtc aggatcaggg
      781 tcgcaaggct ccagctcagc gccagcagca ccagccgccg cgccagcgaa ggcggtcgcg
      841 aggccgccgg agacatcgtc accggttcac gaagcctggg cctcgccgcc cagctcttcc
      901 tcggggcaag tcaggcggta gccgaggcca cgggccgtct cgatccggtc ggagccgatc
      961 ttcttgcgca cccgcccgat gaacacctcg atggtgttgg aatcccggtc gaaatcctgg
     1021 tcgtagaggt gctccaccag ctcggtgcgg ctgatcaccc ggccctggtg catcatcatg
     1081 taatgcagca ggcggtactc cagcgaggtc aggcgaagcg gttcgccgtt gacgctggcc
     1141 cgcgcggccc gcggatcgag cctgaggccc ccgcaggcga ggttcggcgc cgcgtgcccc
     1201 gcggagcggc gcagcagagc gcgcaggcgg gccagcagct cctctgtgtg gaagggcttg
     1261 gtcagatagt cgtcggcgcc ggcgtcgaag cccgccacct tctcgctcca ggcgccgcgg
     1321 gcggtgagga tcagcacggg tgtggccatg ttctcgcgcc gccagcgttc cagcaccgag
     1381 accccgtcca ccttgggaag cccaaggtcg aggatcaccg cgtcataggg ctcggtctcg
     1441 cccaggaact gggcttcctc gccgtctggc gcgtgatcca cggcatagcc ggcgtcggcc
     1501 agcgccatct tcagctggcg ggacaggtcc ggatcgtctt cgacgagcag gatgcgcatg
     1561 atcgcgtcct ccttactgcg ggcggcgcgg acgccgccct attgtcccac gacctggccg
     1621 gtctgggcgt cgacggtgaa gacgacgatc cggccgttgg tgagctgcca ttgcacgagg
     1681 tagacggcgc ggccgcccga ctgccccatg gtcgtgttga gttgtttgcc cggatactgc
     1741 tgggcgatct tgcgcagaac gctcgagagc ggcacctggg ccccggcctg cggcgcctcg
     1801 cgtccaggtt cctgcgccgc cgtcgccgtg gtcacgggcg cggcgacgag caacagggcg
     1861 gcgatgagca tcgggcgttt catggctttg gctctaggcg cccgggactg aaccgggcct
     1921 gaacgtcaag cttatgcgca gacgggtccg gcgtgtcacg cgctgctagc gctggcgctt
     1981 gggcgaatag ggccgctcgc gcttccaggt ttcggag
//
LOCUS       DATAJL010000941         1613 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_76103,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000941 DATAJL010000000
VERSION     DATAJL010000941.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1613)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1613)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1613
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76103"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..364
                     /gene="radC"
                     /locus_tag="VHN39_17765"
     CDS             <1..364
                     /gene="radC"
                     /locus_tag="VHN39_17765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEX2818244.1"
                     /translation="SWSALLSYVRIALANEPREQFRVLFLDRKNQLIADEVMNRGTVD
                     HAPVYPREVMRRALELSASAVILVHNHPSGDPTPSSADVDMTRQVVDAGRPLRIAVHD
                     HLIAARDGVASLKALGLL"
     gene            complement(372..1127)
                     /locus_tag="VHN39_17770"
     CDS             complement(372..1127)
                     /locus_tag="VHN39_17770"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2818245.1"
                     /translation="MAGFFTSSTASAAVVLPAASSLVDCVRNHPDTTLLDPSSCSIPN
                     AAQASVSTAPFVELQTEARELAGDPGPNSSFARLGYTFEIVGGAPGAEVPLLFSTVLF
                     TSAASPDLALARITVGNLGGPQFSGPSFHATEVACSGSPDACAIQNAPNSGFSGTFGI
                     TGVDGVVGTVNLVLEAGVGSVGGTAIATADPFIFIDPSFADAGEFRIVLSDGVVNGLP
                     PASGAPEPAAWAMLIAGFGMVGSTLRRRRRCAA"
     gene            1343..>1613
                     /locus_tag="VHN39_17775"
     CDS             1343..>1613
                     /locus_tag="VHN39_17775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818246.1"
                     /translation="MGGALNGAISKKGAFAVLAWARDDGALINWRAVRDADLIECIAT
                     EPRHLGHEIVGRERALGIWSELLRSRSFNSVLLEADTPLAANQIVG"
BASE COUNT          287 a          536 c          529 g          261 t
ORIGIN      
        1 gtcctggagc gcgctgttgt cctacgtccg catcgccctg gccaacgagc cgcgcgagca
       61 gttccgggtg ctctttctcg accgcaagaa ccagctgatc gccgacgagg tgatgaaccg
      121 cggcaccgtc gatcacgccc cggtctatcc gcgcgaggtc atgcgccgcg cgctcgagct
      181 ctccgccagc gcggtgatcc tggtgcacaa ccacccctcc ggcgacccga ccccgtcctc
      241 cgccgacgtg gacatgaccc gccaggtggt cgacgccggc cgccccttgc gcatcgccgt
      301 ccacgaccac ctgatcgccg cccgcgacgg ggtcgccagc ctcaaggcgc tcggattgtt
      361 gtgacggctg gtcaggcggc gcagcggcgg cggcggcgca aggtggagcc gaccatgccg
      421 aagccggcga tcagcatggc ccaggccgcc ggttcgggag cgccgctcgc gggaggaagg
      481 ccattcacga cgccgtcgct cagcacgatt ctgaactcgc ccgcgtcggc gaagctcgga
      541 tcgatgaaga tgaacggatc cgcggtggcg atcgccgtcc cgccgacgga tcccacgccg
      601 gcttccagga ccagattgac cgtccccacc acgccatcaa cgccggttat cccgaacgta
      661 ccgctgaaac cgctgttggg agcattctgt atggcgcagg cgtccgggct gccgctgcag
      721 gcgacctcgg tggcgtggaa cgatggcccg gagaactgcg gcccaccaag gttgccaacc
      781 gtaattctgg cgagcgcgag gtcgggcgat gcggcggagg tgaagagaac cgttgaaaac
      841 agcaatggga cttcggcgcc gggagcgccg ccgacaatct cgaaggtgta ccccaatcgg
      901 gcgaaactcg agttcggtcc gggatcgccc gccaattccc tggcctcggt ctgcagttcg
      961 acaaatggcg ccgtcgacac ggaggcctgg gcggcgttcg ggatgctgca gctcgaagga
     1021 tcgagcaggg tggtgtcggg atggttgcgg acgcaatcga caagcgagct ggccgccgga
     1081 agcacaacgg ccgccgaggc cgtcgagctc gtgaaaaagc cggccatcaa acccgccgcc
     1141 agcaagccgc ctggcgccag ccacctgcat cgccccgcaa atcgcagagc ctctgagata
     1201 ctgggttcaa tcacgctctc tctccgtttt cgtcgctctt gagactctcg gattaatcct
     1261 ggagggtagg cgcgaagggc ctgccgtcca ggatcgcgaa atctggcctt caaccagagg
     1321 gtgtgctctg ttcgcggcga gaatgggcgg cgccctgaac ggcgcaatat ccaaaaaggg
     1381 tgcttttgcg gtgcttgcgt gggctcgcga cgatggagct cttatcaatt ggcgcgcggt
     1441 gcgcgacgcc gacctgatcg aatgcatagc gactgaaccg cgccatctgg gacacgaaat
     1501 cgttggacgc gaacgcgccc tggggatctg gagcgagctg cttcgaagcc gctccttcaa
     1561 ttcggttctg ctcgaagccg atacgccgct cgctgcgaac cagattgtcg gct
//
LOCUS       DATAJL010000942         4690 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_89834,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000942 DATAJL010000000
VERSION     DATAJL010000942.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4690)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4690)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4690
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89834"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            108..1442
                     /gene="purB"
                     /locus_tag="VHN39_17780"
     CDS             108..1442
                     /gene="purB"
                     /locus_tag="VHN39_17780"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEX2818247.1"
                     /translation="MIPRYARKEAAAIWSPQARFKIMFEIEAYAADAMADLGVIPKEA
                     ARVIWEKGRDAVWDVDRIDEIERQVKHDVIAFLTHVTEVVGPEARFLHQGMTSSDVND
                     TALAVQLCRATDLLLEDVDLVLAALKRRAFEHRFTPTVGRSHGIHAEPTTFGLKLAGH
                     YAEFVRAKERLAMAKFEIATCAISGSVGTFANVDVAVEEYVAEKLGLAVEPVSTQVIP
                     RDRHAAYFAALAVVAASMERLATEIRHLQRTEVLEAEEPFDAGQKGSSSMPHKRNPIL
                     TENLTGLARLVRSAVVPALENVTLWHERDISHSSVERGIAPDATVHLDFALRRLASVM
                     ERLVIYPENMLKNLDRLGGLVHSQRVLLALTQKGMSREASYAAVQRNAMRVWRGEGNF
                     LDFLRADPEVTLSDAELGDLFDLGYHFKNVDRVFARVFGDEANLAAAKEAAQ"
     gene            complement(1447..1770)
                     /locus_tag="VHN39_17785"
     CDS             complement(1447..1770)
                     /locus_tag="VHN39_17785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1476 domain-containing protein"
                     /protein_id="HEX2818248.1"
                     /translation="MTTFDDRERGFEKRFALDQEQEFKAAARRNRALGEWAAGLMGLT
                     ENHIAEYAQAVVKSDLEQPGEDDVLRKVYEDLKGSGVQISEGEVRMKMAELLAQAREG
                     LREGK"
     gene            2014..2769
                     /gene="purC"
                     /locus_tag="VHN39_17790"
     CDS             2014..2769
                     /gene="purC"
                     /locus_tag="VHN39_17790"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEX2818249.1"
                     /translation="MTRRKKIYEGKAKILYEGPEPGTLIQYFKDDTTAFDATKKAVLE
                     GKGVINNRISEHIMTKLNSIGVQNHFIRRLNLREQLIREVEIIPLEVICRNVAAGSLS
                     TRLGLPEGQALPRSIIEFCLKDDKLHDPLVSEEHITAFNWATTQEIDDIMALTLRVND
                     FLTGMFGAVGITLVDFKVEYGRIWENDFARVILADEISPDSCRLWDSTTNEKLDKDRF
                     RRDLGNVIESYTEVARRLGIMKEMPTVIQGGLH"
     gene            2769..3008
                     /gene="purS"
                     /locus_tag="VHN39_17795"
     CDS             2769..3008
                     /gene="purS"
                     /locus_tag="VHN39_17795"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEX2818250.1"
                     /translation="MRATVHVFLKPGVLDVQGKAVEQALHGLGWGGVSGVRVGRTIEF
                     DLAATDSAAAESEVKAMCDKLLANTVIESYRVEVA"
     gene            3005..3385
                     /locus_tag="VHN39_17800"
     CDS             3005..3385
                     /locus_tag="VHN39_17800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818251.1"
                     /translation="MRGYVALPLLIALPLCACAPKAEAPPPAVLALDCAQPFEALAAK
                     ITALPHLAPPSHAPGEPYTFYSTEDGHTSYLITEKGAPGHPAIMMQTAHGGDVVTTGC
                     PYGSPKGYKQLLAYLDSLKTWARR"
     gene            3382..3870
                     /locus_tag="VHN39_17805"
     CDS             3382..3870
                     /locus_tag="VHN39_17805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3291 domain-containing protein"
                     /protein_id="HEX2818252.1"
                     /translation="MNQYHLAEINIGRLRAAVDDPMIADFVANLERINALADGSPGFI
                     WRLVGEGDDATDIKPDPTDEMMALNMSVWTDPQALGAFVYRSDHIGIMRRRAEWFEKL
                     ELYMALWWVPAGHTPTVEEGMGKVDTLRRLGPTAEAFTFRHIFPAPGAHEAPPPILDE
                     CA"
     gene            3867..4529
                     /gene="purQ"
                     /locus_tag="VHN39_17810"
     CDS             3867..4529
                     /gene="purQ"
                     /locus_tag="VHN39_17810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEX2818253.1"
                     /translation="MKAAVIVFPGSNCDRDCKVAIERSTGSHVDLVWHGDTALPDGVD
                     LIVLPGGFAYGDYLRCGAMASLSPVMTEVKAAAERGVATVGICNGFQILCEARMLPGA
                     LLRNERLKYVCKAVELEVTNAQTRFTAGYAGRRYVAMTVGNGEGNFFADEPTLERLEG
                     EGQVVFRYLDNPNGSARGIAGIVNAKGNVLGLMPHPDRAFETELGSADGAILFQSALA
                     SA"
BASE COUNT          809 a         1643 c         1479 g          759 t
ORIGIN      
        1 tcctggcctc cgacccggcg gactaggccc cggggtccgc ggccgccgcc tgcagatttt
       61 catctgaaaa tttgacttcg cggggggtgc gacctcatac ccgaaggatg atcccccgct
      121 acgcccgcaa ggaagccgcc gcgatctgga gtcctcaggc gaggttcaag atcatgttcg
      181 aaatcgaggc ttacgcggcc gacgccatgg ccgatctcgg cgtcattccc aaggaagccg
      241 cccgggtgat ctgggaaaag ggccgcgacg cggtctggga cgtcgaccgg atcgacgaga
      301 tcgagcgcca ggtgaagcac gacgtcatcg ccttcctgac ccatgtcacc gaggtggtgg
      361 ggcccgaggc gcggttcctg caccagggaa tgacctcatc cgatgtcaac gacacggcgc
      421 tggcggtgca gctttgccgc gcgacagacc tcttgctgga ggacgtcgac ctggtcctgg
      481 ccgccctgaa gcgccgggcc ttcgagcacc gcttcacccc caccgtcggc cgcagccacg
      541 gcatccacgc cgagcccacc acctttggcc tgaagctcgc cggccactac gccgagttcg
      601 tccgcgccaa ggagcggctg gccatggcga agttcgagat cgccacctgc gccatctccg
      661 gctcggtcgg caccttcgcc aatgttgacg tggcggtcga agagtacgtg gccgagaagc
      721 tgggcctcgc cgtcgagccg gtctccaccc aggtgattcc gcgcgaccgg catgcggcct
      781 atttcgccgc gctcgccgtc gtggccgcct ccatggagcg gctggcgacc gagatccgcc
      841 acctgcagcg caccgaggtg ctggaggccg aggagccgtt cgacgcaggc cagaagggct
      901 ccagctcgat gccgcacaag cgcaatccga tcctcaccga gaacctgaca ggtttggccc
      961 gcctggtccg ctcggccgtc gtgccggcgc tggagaacgt caccctctgg cacgagcgcg
     1021 acatcagcca ttccagcgtc gagcgcggca tcgccccgga cgccacggtg cacctggact
     1081 tcgcgctgcg ccgcctggcg tccgtcatgg aacgcctggt gatctacccg gagaatatgc
     1141 tgaagaacct cgaccgcctg ggcgggctgg tgcattcgca gcgcgtcctg ctggcgctga
     1201 cgcaaaaggg catgagccgc gaggcctcct acgccgcggt gcagcgcaac gccatgcggg
     1261 tctggcgcgg ggagggcaat ttcctggact tcctgagggc cgatcccgag gtgacgctct
     1321 ccgacgccga gctcggcgac ctcttcgacc tcggctacca tttcaagaac gtcgaccggg
     1381 tcttcgcccg tgtcttcggc gacgaggcca acttggccgc cgcaaaggag gccgcccaat
     1441 aggggcctat ttgccttcgc gtaggccttc gcgcgcctgg gccagcagtt cggccatctt
     1501 catgcgcact tcgccctcgg agatctggac gccggagccc ttgaggtcct catatacctt
     1561 gcgcagaacg tcgtcctcgc cgggctgctc caggtcggac ttgaccacgg cctgggcata
     1621 ttcggcgatg tggttttcgg tcaggcccat cagaccggcc gcccactcgc ccagcgcgcg
     1681 gttgcgccgg gcggcggcct tgaactcctg ctcttgatcg agcgcgaaac gcttctcgaa
     1741 gccacgttca cggtcgtcaa aggtggtcat ggggtcccca agaagcatcg cgggaaagcg
     1801 gcacggtggg cgaccacata tcccggcctg ccccccgtcg caatcgaaag gcgggtcagc
     1861 cgcgaggttt gcgcccatgc tccgcatccg ctaattttgc gcggcctcat atgaagcgag
     1921 acgccgagtc ggacccgcgc gcgagggatt gagccgcgcg cgcttttcgt tgtcccgacc
     1981 ggttgagccc tcgcccacgg agaaggcacg acgatgaccc ggcgtaagaa gatctacgag
     2041 ggcaaggcga agatcctcta cgaaggtccc gagcccggca ctctgatcca gtacttcaag
     2101 gacgacacca ccgccttcga cgccaccaaa aaggctgtgc tcgagggcaa gggggtcatc
     2161 aacaaccgga tcagcgagca catcatgacc aagctgaact ccatcggagt tcagaaccac
     2221 ttcatccgcc ggctgaacct gcgcgagcag ctgatccgcg aggtggagat cattcccctg
     2281 gaggtgatct gccgaaacgt ggccgccggc tcgctctcga cgaggctcgg cctccccgag
     2341 ggccaggccc tgccgcgctc gatcatcgaa ttctgcctga aggacgacaa gctgcacgac
     2401 ccgctggtct ccgaggagca catcaccgcc ttcaactggg ccaccaccca ggagatcgat
     2461 gacatcatgg ccctcaccct gcgggtgaac gacttcctga ccggtatgtt cggcgcggtc
     2521 ggcatcacgc tggtggactt caaggtcgaa tatggccgca tctgggaaaa cgacttcgcc
     2581 cgggtcatcc tggccgacga gatcagcccc gacagctgcc gcctgtggga ttcgaccacc
     2641 aacgaaaagc tcgacaagga ccgcttccgc cgcgacctcg gcaacgttat cgagagctac
     2701 accgaagtgg cccgccgcct ggggatcatg aaggagatgc cgaccgtgat ccagggaggc
     2761 ctccactagt gagggcgacg gtccatgtgt tcttgaagcc cggcgttctc gacgtgcagg
     2821 gcaaggccgt cgagcaggcc ctgcacggcc tgggttgggg cggcgtttcg ggcgtccgcg
     2881 tcggtcgcac catcgagttc gacctggcgg ccaccgactc tgctgcggcc gagtccgagg
     2941 tcaaggccat gtgtgacaag ctgctcgcca acacggtgat cgagagctac cgcgtggagg
     3001 tggcgtgagg ggctacgtcg cccttcccct cctcatcgca ctccccctct gcgcctgcgc
     3061 gccgaaagcc gaggccccgc cgccggcggt cctggcgctg gactgcgccc agcccttcga
     3121 ggctctggcc gcgaagatca ccgccctgcc gcacctggcc ccgccgtcgc acgcgccggg
     3181 cgagccctac accttctatt ccaccgagga tggccacacc tcctacctga tcaccgagaa
     3241 gggggcgccc ggccacccgg cgatcatgat gcagacggcc catggcggcg acgtcgtcac
     3301 caccggctgt ccctacggca gtccgaaggg ttacaagcag cttctcgcct acctcgattc
     3361 cctgaaaacc tgggcccgcc gatgaaccag tatcatctcg ccgagatcaa tatcggtcgc
     3421 ctgcgcgcag ccgtggacga tccgatgatc gccgacttcg tggccaacct tgagcgcatc
     3481 aatgcgctgg ctgacggctc gccgggcttc atctggcggc tggtcggcga gggcgacgac
     3541 gccacagaca tcaagcccga ccccaccgac gagatgatgg cgctcaacat gtcggtgtgg
     3601 acagaccccc aggcgttggg cgccttcgtc taccgctccg atcacatcgg gatcatgcgc
     3661 cgccgcgccg agtggttcga gaagctggag ctctacatgg cgctctggtg ggtccccgcc
     3721 ggccacaccc cgaccgtcga ggagggcatg ggcaaggtcg acaccctgcg ccgccttggc
     3781 ccgaccgccg aagccttcac cttccgccac atctttccgg ctccaggcgc ccacgaggct
     3841 ccgcccccta ttttggatga atgcgcatga aggccgccgt cattgtcttc cccggctcca
     3901 actgcgaccg cgactgcaag gtggccatcg agcggtccac cggctcccac gtcgacctgg
     3961 tctggcacgg cgacaccgcc ctgccggacg gggtcgatct gatcgtcttg ccgggcggct
     4021 tcgcctacgg cgactacctg cggtgcggag ccatggcgtc cctgtcgccg gtgatgaccg
     4081 aggtgaaggc cgccgctgag cggggcgtcg ccaccgttgg catctgcaac ggcttccaga
     4141 tcctctgcga ggccaggatg ctgccgggcg cgctcttgcg caacgagcgg ctcaaatacg
     4201 tctgcaaggc cgtcgagctg gaggtcacca acgcccagac gcgtttcacg gcaggctatg
     4261 cgggccgccg ctacgtcgcc atgaccgtgg gcaacggcga gggcaatttc ttcgctgacg
     4321 agccgaccct tgagcggctg gagggcgagg gccaagtggt gttccgctac ctcgacaacc
     4381 ccaacggctc ggcgcggggc atcgccggca tcgtcaacgc caagggcaac gttctcgggc
     4441 tgatgcctca ccccgatcgc gccttcgaga ccgaactcgg ctcggccgac ggcgcgatcc
     4501 tctttcagag cgcgctcgcc agcgcctaga tcgcgtgctt ggaacggaaa gcagaaaggt
     4561 ccgccgcccc gagggcgacg gacctctgaa aatcgtactg tccgagacga tcaggcggcg
     4621 gcggccgtgg actggcgacg ccggcgcaac agaacgcccg cacccccgaa gcccaggatc
     4681 atcagcgccc
//
LOCUS       DATAJL010000943         1700 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102607,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000943 DATAJL010000000
VERSION     DATAJL010000943.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102607"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..274
                     /locus_tag="VHN39_17815"
     CDS             <1..274
                     /locus_tag="VHN39_17815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818254.1"
                     /translation="DVMGDDTVTPRINYGHVSSQWASLFENTALGDRVGARDVLNGQV
                     AWKHGDLIATIYGSNLTDQHYVGAVNSGLRFVGPPRQYGLRLAKIF"
     gene            353..1042
                     /locus_tag="VHN39_17820"
     CDS             353..1042
                     /locus_tag="VHN39_17820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013079481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2818255.1"
                     /translation="MARPAATKPQRRSKAEQRAETLEQILDAAEYLFSKHGLYGVTLR
                     DVGQRVGVHTSLLHYYFDDKRALFEAVFARRAGVTSGRRMESLNRYDVEAAGRPTVEG
                     ALHAFLDPDFDLYIEGGEGWMNFAAFGAQVANTPEGAAMMDRHFDPVVLRLIGILKQA
                     LPDTRDEDIFWGYHFVTGALMLTLGRTGRIDRLSGGICKSDDFPAVKARMAKFMAGGF
                     LAFCDERAAKT"
     gene            1090..>1700
                     /locus_tag="VHN39_17825"
     CDS             1090..>1700
                     /locus_tag="VHN39_17825"
                     /inference="COORDINATES: protein motif:HMM:NF012363.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase family protein"
                     /protein_id="HEX2818256.1"
                     /translation="MTIAAFVGAAALSGVAQAAPSAKLDAGIVEGAASGDLLVFKGIS
                     YAASTAGANRWRAPQPVSAWTGVKAATSFGAACPQPHLSDDAWARVGPQSEDCLFLNV
                     WRPAKVEKGGDAVMVFIHGGSFIRGAAGVPLYDGSALATRGVVVVTINYRLGRLGYFA
                     HPALSAENADGMVGNYGMMDQIAALRWVQKNIRAFGGNPAKVTV"
BASE COUNT          279 a          544 c          609 g          268 t
ORIGIN      
        1 cgacgtgatg ggcgacgaca ccgtgacgcc gcggatcaac tatggccacg tctcgtccca
       61 gtgggcctcg ctgttcgaga acacggcgct tggcgaccgg gtgggcgcgc gcgacgtcct
      121 gaacgggcag gtggcctgga agcacggcga cctgatcgcg accatttatg gatccaacct
      181 gacggaccag cactacgtcg gcgccgtcaa ctcgggcctg cgcttcgtcg gcccgccgcg
      241 ccagtacggg cttcgcctgg ccaagatctt ctgacgcgac atgccgccgg gttgcagcgt
      301 cgacggttca cgcaaataga tggagtccat tcaagctctg aaggcccact ccatggcgcg
      361 acccgcggcg acgaaacccc agcggcggtc aaaggcggaa cagcgggccg agacgctcga
      421 gcagattctc gacgccgcgg aatacctgtt ctcgaaacac gggctctacg gcgtcaccct
      481 gcgcgatgtc gggcagaggg tcggggtcca tacctcgctg ctgcactact acttcgacga
      541 caagcgggcg ctgttcgagg cggtgttcgc gcgccgcgcc ggggtgacca gcgggcgccg
      601 gatggagtct ctcaatcgct atgacgtcga ggcggcgggc cgtccgaccg tggagggcgc
      661 cctgcacgcc ttcctggacc ccgacttcga cctctacatc gagggcggcg agggctggat
      721 gaacttcgcc gccttcgggg cccaggtggc caacaccccg gaaggcgcgg cgatgatgga
      781 ccggcacttc gacccggtgg tcctcaggct catcggcatc ctgaagcaag cgctgcccga
      841 cactcgggac gaggatatct tctggggcta tcacttcgtg accggcgccc tgatgctgac
      901 cctcggacgc acggggcgga tcgaccggct ttccggcggg atctgcaagt ccgatgactt
      961 tccggcggtg aaggcgcgga tggcgaagtt catggccggg ggtttcctgg ccttctgcga
     1021 cgagcgtgcg gcgaagactt gaaaggccga agggccaacc gggggaatga caaggtgaag
     1081 atgttgaaga tgaccatcgc ggccttcgtg ggggccgcgg ccttgtcggg cgtggcgcag
     1141 gcggcgccga gcgccaagct ggacgccggc atcgtcgagg gcgcggccag cggcgacctg
     1201 ctggtgttca agggcatctc ctatgccgcg agcaccgccg gcgccaaccg ctggcgcgcg
     1261 ccgcagccgg tttcggcctg gacgggggtc aaggccgcga ccagcttcgg ggcggcctgt
     1321 ccgcaacctc acctgagcga cgacgcctgg gcgcgggtgg ggccgcagag cgaggactgc
     1381 ctgttcctca atgtctggcg gccggccaag gtcgaaaagg gcggcgacgc ggtgatggtc
     1441 ttcatccacg gcggctcctt catccggggc gcggccggcg tgccgctcta cgacggctca
     1501 gcgctggcca cgcgcggcgt ggtggtagtg acgatcaact accggctggg gcggctgggc
     1561 tatttcgcgc atccggcgct cagcgccgag aacgccgatg gcatggtcgg caactacggg
     1621 atgatggacc agatcgcggc tttgcggtgg gtacagaaga acatccgcgc gttcggcgga
     1681 aaccctgcga aggtcacggt
//
LOCUS       DATAJL010000944         2386 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102641,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000944 DATAJL010000000
VERSION     DATAJL010000944.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102641"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..334)
                     /locus_tag="VHN39_17830"
     CDS             complement(<1..334)
                     /locus_tag="VHN39_17830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010659885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2818257.1"
                     /translation="MKYLHTMVRVADLDASLAFYCDKLGLVEASRTENAGGRFTLVFL
                     CAPGDEAAAKASKAPMVELTFNWDPEAYEGGRNFGHLAYEVDDIYATCEKLLKAGVTI
                     NRPPRDGVM"
     gene            581..1642
                     /locus_tag="VHN39_17835"
     CDS             581..1642
                     /locus_tag="VHN39_17835"
                     /inference="COORDINATES: protein motif:HMM:TIGR01730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEX2818258.1"
                     /translation="MKPQYLFVVVAVGVVALYFIVRSLFGAVAPTPAQAKPTGPAGPP
                     SVQAKLVPETVRTYDVVVRGRTQATRSVIIRSETAGTVAAAPVLQGGFVKQGQVLCRL
                     AVDARQAALDQAKAAQRSAQLAVQQNEELAKKGFRAPTQVLQAQATLDASTAAVRQGE
                     IALAQVNIKAPFAGVFDHRDAEIGAYLGPGQPCGTVIEIDPLLIVGDVPETQAANMKV
                     GATATARLVSGQVLTGHIRYVSHDADPQTRTYHLEVTVPNPRLDIRSGLSAEMHIGAG
                     SGPAHLVPVSSMVLDSAGRQGVRYVLADGRVAFAPVTIVEEARDGVWVTGLSGPVQLI
                     TVGQSYVADGQKVRVALAR"
     gene            1732..>2386
                     /locus_tag="VHN39_17840"
     CDS             1732..>2386
                     /locus_tag="VHN39_17840"
                     /inference="COORDINATES: protein motif:HMM:NF013069.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HEX2818259.1"
                     /translation="MIGALIDGAIKRRKVVLGVTLIACVFGFFSYLAMPREAQPDIDL
                     PYISVVVPFPGVSPEDAERLLIKPLEVQLQTIQGIKHMNAVARQSAAIVTLEFEPDFS
                     KQKALDDVRSKVDLARGRFPPDAEPPIIEEESFSDQPILGIVLHGQAPERELARISKD
                     LKERLESAPGVQEAFQSGAREELLDVTIDPLRMEAYNVTATDLSGVIARNNQLVPAGA
                     "
BASE COUNT          396 a          819 c          779 g          392 t
ORIGIN      
        1 ccatgacgcc gtcgcggggc gggcggttga tggtgacgcc ggccttgagc agcttctcgc
       61 aggtcgcata aatgtcgtcg acctcatagg ccagatggcc gaagttgcgg ccgccctcat
      121 aggcttcggg gtcccagttg aaagtgagct cgaccatcgg cgccttgctg gccttggcgg
      181 cggcctcgtc gccgggcgcg cagaggaaca ccagcgtgaa ccgaccgccc gcgttttcgg
      241 tgcgcgaagc ctccaccagg cccagcttgt cgcaatagaa ggccagcgag gcgtcgaggt
      301 cggccacgcg gaccatggtg tggagatatt tcacctgtga ttatccttta catcgtaagc
      361 ttgcgcgaca cgaggtcacg cggcgcccgc cgcaaccatg tgttgcaata gagtgctgcg
      421 aaccagtcat aaacgtcgtg tcgctatcct gtccgcgatt tcatttgcag tcgcgtaacg
      481 gtggcatcac aagcgcgcta agcctctaaa atgaggtcgc acgtggaagc gtcgctgatt
      541 cgcgcggagc tgtagggggc tcaggaacag cttgaagcga ttgaaaccac agtacctgtt
      601 cgttgtcgtc gccgttggcg tggtggcgct ctacttcatc gtgcgcagcc tgtttggcgc
      661 ggtggcgccc accccggccc aggcaaagcc caccggcccg gccggcccgc ccagcgttca
      721 ggccaaactc gtgccagaga cggtgcggac ctacgacgtg gtggtccgcg gccgcaccca
      781 ggcgacccgc tcggtcatca tccgctccga gaccgccggc acggtcgccg ccgctccggt
      841 gctgcagggc ggcttcgtca aacagggtca ggtgctgtgc cgcctcgccg tcgacgctcg
      901 ccaggcggcg ctcgaccagg ccaaggccgc ccagagatcg gctcaactgg ccgtgcaaca
      961 gaacgaggag ctggccaaga aaggcttccg cgcgccgacc caggtgctgc aggcccaggc
     1021 gacgctggac gcctccaccg cggccgtgcg ccagggcgag atcgccttgg cccaggtcaa
     1081 catcaaggcg cccttcgccg gcgtcttcga tcatcgcgac gcggagatcg gcgcctatct
     1141 cggccccggc caaccctgcg gcaccgtgat cgagatcgac ccgctgctga tcgtcggcga
     1201 cgtcccggag acccaggccg ccaacatgaa ggtgggcgcc accgccacgg cgcggctggt
     1261 ctcgggccag gtgctgaccg gccacatccg ctacgtgtcg cacgacgccg acccacagac
     1321 ccgcacctac caccttgagg tgaccgttcc gaacccaagg ctggacatcc gctccgggct
     1381 gtcggcggag atgcacatcg gcgcgggctc cggcccggct cacctggtgc cggtatcgtc
     1441 gatggtgctg gattcggccg ggcgccaggg tgtgcgctat gttctcgccg acggccgcgt
     1501 ggcgttcgcg ccggtgacca tcgtcgagga agcccgcgac ggggtgtggg tcaccggcct
     1561 gtccggcccc gtccagttga tcaccgtcgg ccagtcctat gtcgccgacg gccagaaggt
     1621 tcgtgtcgct ctggcgcgct agcgccggag cgcccaccat ttttagatag aaaatggtgg
     1681 tttttcaaag gtttccagca cttccttcgg aaatgcctgg ggaggaatga gatgatcggc
     1741 gcgctgatcg acggagccat caagcggcgc aaggtggtgc tgggcgtcac cctgatcgcc
     1801 tgtgtcttcg gcttcttctc ctacctggcc atgccccgcg aggcccagcc ggacatcgac
     1861 ctgccctaca tctccgtcgt cgtgcccttc ccgggggtca gcccggagga cgccgagcgc
     1921 ctgctgatca agccgctgga ggtccagctg cagaccatcc agggcatcaa gcacatgaac
     1981 gcggtcgcgc gccaaagcgc ggccatcgtc acgctcgagt tcgagcccga cttctccaag
     2041 cagaaggcgc tggatgacgt ccgctccaag gtcgacctgg cccgcggccg ctttcccccc
     2101 gacgccgagc cgccgatcat cgaggaggag agcttctccg accagccgat cctcggcatc
     2161 gtcctgcacg gccaggcgcc ggagcgcgag ttggcgcgga tctccaagga cctgaaggag
     2221 cggctggaaa gcgcgcccgg cgtgcaggag gccttccaga gcggcgcccg agaggagctg
     2281 ctggacgtca ccatcgatcc gctccggatg gaggcctaca acgtcacggc caccgacctc
     2341 tcgggcgtga tcgcgcgcaa caaccagctg gtgccggccg gcgccc
//
LOCUS       DATAJL010000945         3812 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_89962,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000945 DATAJL010000000
VERSION     DATAJL010000945.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89962"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1059
                     /locus_tag="VHN39_17845"
     CDS             <1..1059
                     /locus_tag="VHN39_17845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2818260.1"
                     /translation="WASHRAVAIERGAAAAEISNTYTDIIKAVRQGIQVLIIAIGAYL
                     ILKAKIHQGMLFANMILASRALQPIEKIVGSWDPLNNMVRAHGRLMQLLSKAEPSAPA
                     TALPRPNGRLVVEALNFAPVGVPKLLLMNINFSVEPGETLGVIGPSGAGKSTLARLLV
                     GIWRPTNGVVRLDGADVFSWDRADFGRHIGYLPQDTELFAGSIRDNIARFRTDVSDEE
                     VVTAAQLAGVHELILKLPKGYETEVGDSGHTLSAGQRQRVGLARTMLGNPAFIVLDEP
                     NASLDAEGEDALLKAIDAMKSNGATVVIISHKPAIFRAADKMLVLREGRIELFGPRDQ
                     VMSRLMKPTEVRAVEAGR"
     gene            1056..2426
                     /locus_tag="VHN39_17850"
     CDS             1056..2426
                     /locus_tag="VHN39_17850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030253 - protein secretion by the type I
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HEX2818261.1"
                     /translation="MKLDLTPVRSSYIVPTFGGDDRLPIDPALRRRMRRPMIAGAAII
                     VILVLGLGLWASLTPLSTGITAQGEVRVESNKKTLKHQSSGTIRQILVQEGQHVRAGQ
                     PMILYDDTEARASNDVLQNQYDSLEAQSARLTAEATGRPAPEFPADLMARMSDPRVAG
                     MIRDQQFLFTTRLQLFQSQNSVLNQRLDQIQSQIEGQQTQVASIDEQIKLTQEEMAGY
                     QELYDKGFAPKPLILARQRSLADLSGHRGSLMSDIARMHQQQGETRMQMAAGRDTRQS
                     QAAETLRDTQAKIADTSPRLTAAKETLDETVIRAPVDGYVFNLTQFTVGGVTNPGETL
                     MEVVPANAPIIVSAQVTLQDIDKVHVGMDAKVRFTGLNQRWHSPLNAKVIMVSPDKIV
                     NDKAAAAFYRADLRIDAKELTKLKKSAQITPGMPAQVTVVSGQKTVMGSLISPITDTI
                     KDALHD"
     gene            2644..>3812
                     /locus_tag="VHN39_17855"
     CDS             2644..>3812
                     /locus_tag="VHN39_17855"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX2818262.1"
                     /translation="MTTYFFESITAAQALAFTSADTLVFSNPTSSGAKMTVLYTVIPA
                     TPLTVASETITLTDPTDGHTVVFGPGIQGAGETGHVVIFPDGSNLVVGFDGAADTTGV
                     ATAFNDGMFGGAGDDVLSGGDGGDLLQGNSGNDTLAGGSAFGSAQTTDGNDTIFGGQG
                     NDSIDVGGGVNFAQGNLGNDTITTLGASTASNTLLGGKGDDSITGGAGNDVLSGDLGN
                     DVVSGGGGNDSIAGVDGNDSLTGGSGNDTIDGGIGNDTIKGGDGSNSLTGGTGNDSID
                     VAGTTAAAISFVEGGQGNDTITDSSAGADTVLGGQGADLITFSGTGGGFIDGNLGNDS
                     IVITAAATGTMKLSGEDGTDTIDAHSGAGHYNIDGGAGDASIIGGALSDTLSGSDG"
BASE COUNT          715 a         1324 c         1194 g          579 t
ORIGIN      
        1 tgggccagcc accgcgccgt cgccatcgag cgcggggccg cggccgcgga aatctccaac
       61 acctacaccg acatcatcaa ggcggtccgc cagggcatcc aggtcctgat catcgccatc
      121 ggcgcctacc tgattctgaa ggccaagatt caccagggca tgctgttcgc caacatgatc
      181 ctggccagcc gcgccctgca gccgatcgag aagatcgtcg gctcgtggga tccgctgaac
      241 aacatggtcc gggcgcacgg acggctgatg cagctgctgt cgaaagccga gccttcggcg
      301 ccggccacgg cgcttccccg gcccaacggt cggctggtgg tcgaggcgct caacttcgcg
      361 ccggtcggcg tccccaagct cttgcttatg aacatcaatt tcagcgtgga accgggcgag
      421 accctcggcg tgatcggccc gtcgggggcc ggcaagtcga cgctggcgcg ccttctggtc
      481 ggcatctggc ggcccaccaa cggcgtggtg cgcctcgacg gcgccgacgt gttcagctgg
      541 gaccgcgccg acttcggccg ccacattggc tacctgccgc aggacaccga gctgttcgcc
      601 ggctcgatcc gtgacaatat cgcccgcttc cggaccgacg tgagcgacga ggaagtggtc
      661 accgccgccc agctcgccgg cgtccatgaa ctcattctca agctgcccaa gggctacgag
      721 accgaagtcg gcgacagcgg ccacacgctt tcggccggcc agcgccagcg cgtcggcctg
      781 gcgcgaacca tgctgggcaa tccggcgttc atcgtgctcg acgagcccaa cgccagcctc
      841 gacgccgagg gcgaggatgc gctgctgaag gccatcgacg cgatgaagag caacggcgcg
      901 acggtggtga tcatttcgca caagccggcc atcttccgcg ccgccgacaa gatgctcgtg
      961 ctcagggagg gccgcatcga gttgttcggc ccgcgagacc aggtgatgag ccgcttgatg
     1021 aaacccacgg aagtgcgcgc cgtcgaggcc ggccgatgaa actcgatctc acgcccgtcc
     1081 gctcctccta catcgtcccg accttcggcg gcgacgaccg cctgccgatc gatccggcgc
     1141 tgcgccggcg catgcgccgc ccgatgatcg cgggcgctgc gatcatcgtg atcctggtcc
     1201 tgggcctggg cctctgggcc tcgctcaccc ccttgagcac gggcatcacg gctcagggcg
     1261 aggtgcgggt cgaatccaac aagaagaccc tcaaacacca gtctagcggc accatccggc
     1321 agatcctcgt gcaggaaggc cagcacgtgc gcgccggcca gccgatgatc ctctacgacg
     1381 acaccgaggc gcgcgcctcc aacgacgtgt tgcagaacca gtacgacagc ctggaggcgc
     1441 agtccgcccg gctcaccgcc gaggcgaccg gcaggccggc cccggaattc cccgccgatc
     1501 tgatggcccg catgtccgat ccccgggtgg cggggatgat tcgcgaccag caattcctgt
     1561 tcaccacccg cctgcagctg ttccagagcc agaattcggt gctcaaccaa cggcttgacc
     1621 agatccagag ccagatcgag ggccagcaga cccaggtcgc ctccatcgac gaacagatca
     1681 agctcaccca ggaagagatg gccggctatc aggagctcta cgacaagggc ttcgccccca
     1741 agccgctgat ccttgcgcgc cagcgttcgt tggccgacct cagcggccac aggggctcgc
     1801 tgatgtccga catcgcccgg atgcatcagc agcaggggga aacccgcatg cagatggccg
     1861 cggggcgcga tacccgccag agccaggccg ccgagaccct gcgcgacacc caggcgaaga
     1921 tcgccgacac ctctccgcga ctcaccgccg ccaaggagac gctcgacgag accgtcatcc
     1981 gcgcgccggt ggacggctac gtgttcaacc tcacccagtt caccgtcggc ggggtcacca
     2041 atcctggcga aacgctgatg gaggtggtgc ccgccaacgc gccgatcatc gtcagcgcgc
     2101 aggtcaccct gcaggacatc gacaaggtcc atgtgggcat ggacgccaag gtgcgcttca
     2161 ccggactcaa ccagcgctgg catagcccgc tgaacgccaa ggtgatcatg gtttcgcccg
     2221 acaagatcgt caacgacaag gcggcggcgg cgttctaccg cgccgatctt cgaatcgacg
     2281 cgaaggaact caccaagctc aaaaagagcg cccagatcac ccccgggatg ccggctcagg
     2341 tcacggttgt cagtggccag aagacagtca tgggatcgct gatctcgccc ataaccgaca
     2401 ccatcaagga cgcgcttcat gattgataga agcgtctcgg ccacaggggg taagtggaag
     2461 gattctgcga cctttttgct gttgcgcaaa aggcaggctt ccgatacctc tcccctcggg
     2521 ctcgtttaac ctttcgccgc agccacgcta tggcgcttgg gataaatgga ctgccggggc
     2581 tgctccatcg gggatggggg tcaggcgttc tgggggtccg tgtgacacag actggagaga
     2641 cgaatgacga cttatttctt tgagagcatc actgcggcgc aggcgctcgc cttcacctcc
     2701 gcagatactt tggtgttcag caatcccacg tcttcgggcg cgaagatgac ggtgctctac
     2761 accgtgattc cggcgacgcc gctgactgtg gcttccgaga ccatcaccct taccgatccc
     2821 accgacggcc atacggttgt cttcgggccc ggcatccagg gcgctggcga gaccggccac
     2881 gtcgtgatct tcccggacgg ctccaacctg gtggttggct tcgacggcgc cgctgacacc
     2941 acgggtgtcg cgacggcttt caacgacggc atgttcggcg gcgccggtga cgacgtcctc
     3001 agcggcggcg acggcggcga tctgctgcaa ggcaacagcg gcaacgacac cctcgcgggc
     3061 ggctcggcct tcggctccgc tcagaccacc gacggcaacg acaccatctt cggcggtcag
     3121 ggcaacgact cgatcgacgt cggcggcggc gtgaacttcg cccagggcaa cctcggcaac
     3181 gacacgatta ccactttggg cgcttcgacg gcttccaaca ccctgctcgg cggcaagggc
     3241 gacgacagca tcaccggcgg cgccggcaat gatgtcctct ccggcgacct cggcaacgac
     3301 gtcgtctcgg gcggcggcgg caacgacagc atcgccggcg tcgatggcaa cgacagcctg
     3361 accggtggat ccggcaacga cacgatcgac ggtggtatcg gcaacgacac catcaagggc
     3421 ggcgacggca gcaacagcct gaccggcggc acgggcaacg acagcatcga cgtggccggc
     3481 accaccgcgg ccgcgatcag cttcgtcgaa ggcggccagg gcaacgacac gatcaccgac
     3541 agttcggctg gcgcggatac ggtccttggt ggccagggcg ctgacctgat caccttctcc
     3601 ggaaccggcg gcggcttcat cgacggcaac ctcggcaacg acagcatcgt catcaccgct
     3661 gctgcgaccg gcaccatgaa actgtcgggc gaagacggta ccgacacgat cgacgcccat
     3721 tcgggcgccg gccactacaa catcgacggc ggggccggcg acgcctccat catcggtggc
     3781 gccctcagcg acaccctgtc gggcagcgac gg
//
LOCUS       DATAJL010000946         1592 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102698,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000946 DATAJL010000000
VERSION     DATAJL010000946.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1592
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102698"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..884)
                     /locus_tag="VHN39_17860"
     CDS             complement(<1..884)
                     /locus_tag="VHN39_17860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818263.1"
                     /translation="MKTVGPKRADAVPAGAAAPVAPVPRLQFTQVAFAGHNRDSDLGD
                     PKSVTAGLKVAFRKLTEGGLSQGRLLTGYAPGADQAAVRAWRDAALGSVHVVFPFLGE
                     QAGGHPPPDIQSATWLDGATTRANGRNPHLAQTRWLIGAADLLVVVWTGQQARKAGGT
                     ADAVRLALEHRVPILWVQPAHPDHPRLIRPQFLDELHADRAPLVTHATPEGLHAALSV
                     LGLSAADTVPEEFGPDAPHRIGWSSRTYAVFRRTLGGRGSGFADRPPPEDLGVQDGFV
                     ALTRARRAAAEHARRLGAV"
     gene            1075..>1592
                     /locus_tag="VHN39_17865"
     CDS             1075..>1592
                     /locus_tag="VHN39_17865"
                     /inference="COORDINATES: protein motif:HMM:NF025056.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003953 - NAD+ nucleosidase activity
                     [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="toll/interleukin-1 receptor domain-containing
                     protein"
                     /protein_id="HEX2818264.1"
                     /translation="MARIFISYGRSTAPQARRIADSLCDLNHDVWIDDQLLAHRSFAD
                     AIEEQLDAADAVVVLWSPDAARSEWVRAEASRGRTAGKLVQVMLERCVLPMPFDQIHC
                     VKLFDWGGDPTAPAWSSVVASVDAVLHPATAARRAPAAAAPSSPAERRTERRQVTALS
                     CDLADSGALSRRL"
BASE COUNT          230 a          555 c          572 g          235 t
ORIGIN      
        1 acggcgccga ggcgccgcgc gtgttcggct gcggcccgcc gtgcgcgggt gagcgcgacg
       61 aaaccatcct ggaccccgag gtcctccggc ggcggcctgt cggcgaaccc tgaaccccgg
      121 cccccgaggg tccggcggaa gacagcgtag gttcgcgacg accaacctat gcggtggggt
      181 gcgtccggtc cgaattcctc cgggaccgta tcggccgcgc tcagaccgag gacgctgagc
      241 gccgcgtgaa ggccttccgg cgtggcatgg gtgacaagcg gagcgcgatc ggcgtgcagt
      301 tcgtcgagga actggggccg gatcagccgg gggtgatcag gatgggcggg ctgaacccag
      361 agtatgggca cgcgatgctc gagggcgaga cgcaccgcgt cggcggttcc gccggccttg
      421 cgtgcttgct ggcccgtcca gaccacaacc agcaggtcgg cggccccgat cagccatcgg
      481 gtttgcgcga ggtgcgggtt gcgtccgttc gcgcgcgtgg tcgccccgtc gagccaggtg
      541 gccgactgta tgtccggcgg ggggtggcca ccggcctgct cgcccagaaa gggaaatacg
      601 acgtggacgg atcccagcgc cgcgtcccgc caggcgcgga ccgccgcctg gtccgcgccg
      661 ggggcatagc ctgtgagcaa gcgcccctgg ctgagccctc cttcggtaag cttgcggaac
      721 gccaccttga gcccggcggt gacggacttc gggtcgccga gatcgctgtc gcggttgtgg
      781 cccgcgaagg ccacctgggt gaactgcagc cgcggaacgg gcgcgaccgg cgccgcagcg
      841 cccgcaggga cggcgtcggc ccgcttgggt ccgacggttt tcatcggaac cgtcggggca
      901 tcgaatccgg cgtcgcgaac atgcttccca agctcacccc cattcacata ccaccccggc
      961 ccgatgatag cgctcaaggc gcgcgaagcg aaagccgcgg cgccgccagc cgcttacgct
     1021 gtctattgcc acggcgcgga atgcattgct tcctatcgag ggaacagggc gccaatggct
     1081 cggatcttca tttcctacgg ccgttcgacc gcaccgcagg cgcggcgcat cgccgacagc
     1141 ctgtgcgacc tgaaccatga cgtctggatc gacgaccagc tgctcgcgca ccgatccttt
     1201 gccgatgcaa tcgaggagca gctggacgcc gccgacgccg ttgtcgtgct ctggtcgccg
     1261 gacgcggctc gctctgaatg ggtccgcgcg gaggcgagcc gtggccggac ggccggcaag
     1321 ctcgtgcagg tgatgctcga gcgatgcgtg ctccccatgc cgttcgatca aatccactgc
     1381 gtgaagttgt tcgactgggg gggagacccc acagcccccg cctggagctc ggtggtcgcc
     1441 agcgtggacg ccgtcctgca cccggcgacg gccgcgcgcc gcgcgccggc cgccgcggcc
     1501 ccgtcaagcc cggcggagcg gcgcacggag cgtcgtcagg tgaccgcgct ttcctgcgac
     1561 ctggcggact ccggcgcact ttcgcggcgc ct
//
LOCUS       DATAJL010000947         2097 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_124786,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000947 DATAJL010000000
VERSION     DATAJL010000947.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124786"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..804)
                     /locus_tag="VHN39_17870"
     CDS             complement(<1..804)
                     /locus_tag="VHN39_17870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818265.1"
                     /translation="MRGGLLFALLLATAPLAQRAMAADVIGDLIEASAAAADPPPLEG
                     RKRPGRVEELPPAEVVQPNPNAINAPPPEAFPTDQIPIPDRWRLIEAVGVHSRWFDPY
                     NQNTIKGDRPIRGTQDWFFTLTGVSDTVIEPRSFPLPVGSQTTTRPGSNDNFGRTSSF
                     IGSQTVIVGLALTKGSTAYKPPEIEARLTLAFNDNYAQVPEKRVLSVSPSNPPRRNDA
                     FLGVQEAFIDYHIRNVSDRYDFDSIRVGIQPFSSDFRGFLFQDNQLGVRL"
     gene            complement(808..>2097)
                     /locus_tag="VHN39_17875"
     CDS             complement(808..>2097)
                     /locus_tag="VHN39_17875"
                     /inference="COORDINATES: protein motif:HMM:NF015862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-binding protein"
                     /protein_id="HEX2818266.1"
                     /translation="MSDGDYGFDADTSNIDIDDEENVALAATNGFSAPATITADHVSL
                     AGTTLRYSDATTATLRVSPASATPFASLPASTGTLTAVTGYYPGGTVLAGQVYGAEAS
                     GVRQATAAEFSVPGGFILTNGAGQNRYPPRPGTDGAEVSAPMTAAEVTALLEEAFKVM
                     AHSRAAIRQPNDSIAQMTIAVTDTHGAILGVIRAPDASVFGTDVAVQKARTASFFSGS
                     FAAADLSGDPSADVRGFVQKVRDFFPDQTTLTGKTAFGVRSIGNLARPQFPDGQVGRP
                     NGPLSRPISQWSIFSTGLQSALVITNIGQHLGFVTGASPADTPQRCTFLPDAVAGQNR
                     LQNGLQIFPGGSPIYRNGKLIGGIGVSGDGIDQDDMVSFLGLFNASARVGIGEADPTI
                     RADQLLVGPAPAQRLLFVNCPFAPFLDTSDQNVCQGK"
BASE COUNT          340 a          651 c          756 g          350 t
ORIGIN      
        1 caaccggacg cccagctgat tgtcctggaa aagaaatccc ctgaagtcac tggaaaaagg
       61 ctggattccg acccggatgg agtcgaaatc gtagcggtcc gagacgttgc ggatgtggta
      121 atcgatgaag gcttcctgga cgccaaggaa ggcgtcattg cgccgcggcg gattgctggg
      181 gctgaccgac agcacgcgct tctccggcac ctgggcgtag ttgtcgttga aggccagtgt
      241 cagccgggcc tcgatctccg gcggcttgta ggcggtcgag cccttggtga gcgccaggcc
      301 cacgatgacc gtctgcgatc ctatgaagct tgaggtgcgc ccgaagttgt cattgctgcc
      361 gggccgcgtc gtggtctgag agcccaccgg aagcgggaag ctgcgcggct cgatcaccgt
      421 gtcggaaacg ccggtcaggg tgaagaacca gtcctgtgtg cccctgattg gccggtcgcc
      481 cttgatagtg ttctggttat aggggtcgaa ccaccgtgaa tggacgccca ccgcctcgat
      541 cagccgccag cggtcgggga tcggaatctg gtcggtgggg aaagcctccg gcggcggggc
      601 gttgatggcg ttgggattgg gctggacgac ttcagccggc ggcagttcct cgacccggcc
      661 ggggcgtttg cggccctcca atggcggggg atcggcggcg gccgcgctgg cctcgatcag
      721 gtcgccgatc acgtcagccg ccatcgcccg ctgggccagc ggggccgtgg cgagcaggag
      781 cgcgaagagc aggccgcccc gcattcccta ttttccctga cagacgttct ggtccgaggt
      841 gtccaggaac ggtgcaaacg gacagttaac gaaaagcagg cgttgcgccg gcgcgggccc
      901 caccagaagc tggtccgcgc ggatcgtcgg gtccgcttcg ccgatgccca cccgggctga
      961 cgcattgaaa agacccagga aagagaccat gtcgtcctga tcgatgccat cgccggagac
     1021 gccgattccg ccgatcagtt ttccgttacg gtaaatcggc gacccgcccg gaaagatctg
     1081 caggccgttc tgcaggcggt tctgtccggc gaccgcgtcg ggcaggaagg tgcagcgttg
     1141 cggcgtgtcg gcggggcttg ctccggtcac gaaccccagg tgctggccga tattggtgat
     1201 caccagcgcc gactgcaggc cggtcgagaa gatgctccac tgcgagatcg gccgcgacag
     1261 gggaccgttc ggccgcccta cctggccgtc agggaactgc ggccgcgcca ggttgccgat
     1321 ggagcggacc ccgaaggcgg tcttgccggt gagcgtcgtc tgatccggga agaagtcgcg
     1381 cactttctgc acgaagccac gcacgtcggc gctgggatcg cctgagaggt cggcggcggc
     1441 gaaggacccc gagaagaagc tggccgtccg cgccttctga acggccacgt cggtgccgaa
     1501 caccgaggcg tccggcgcgc gaatcacgcc caggatcgcg ccatgggtgt cggtgacggc
     1561 gatggtcatc tgggcgatgc tgtcgttggg ctggcggatc gcggcgcggc tgtgggccat
     1621 caccttgaac gcctcctcca agagggcggt cacctcggcg gccgtcatcg gggcggaaac
     1681 ctccgcgcca tcggtgccgg gacgcggcgg atagcggttc tggccggcgc cattggtcag
     1741 gatgaaaccg ccgggcaccg agaactccgc cgccgtcgcc tggcgcacgc cggaggcctc
     1801 ggcgccatag acttggcccg ccagaacggt cccacccgga tagtagccgg tgaccgctgt
     1861 cagcgtcccc gtactggccg gcaggctcgc gaagggcgtg gccgaggccg ggctcactct
     1921 cagggtggcc gtggtggcgt cgctgtagcg aagggtcgtg ccggcgaggc tcacgtggtc
     1981 ggcggtgatc gtcgccgggg ccgagaagcc attggtggcg gccaaggcca cgttctcctc
     2041 gtcgtcgatg tcgatgttgg aggtgtcggc atcgaagccg taatcgccgt ccgacat
//
LOCUS       DATAJL010000948         2032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_76322,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000948 DATAJL010000000
VERSION     DATAJL010000948.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76322"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VHN39_17880"
     CDS             complement(<1..245)
                     /locus_tag="VHN39_17880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818267.1"
                     /translation="MKKIFLGLIALSALAATPALAGNLLVDGSFENGTTGWTPGGVSG
                     DGFPPSVIGYNNHDGYPTGAFGELVPPDNAVGNPGFDP"
     gene            455..934
                     /locus_tag="VHN39_17885"
     CDS             455..934
                     /locus_tag="VHN39_17885"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX2818268.1"
                     /translation="MKRLLPILLVAVLGASGAAYAQAPTPAAPAVVSGADFLARNAHA
                     AGVVTLPSGLQYKVVQSGPAGPSPKSGDILKVHYEGTLVSGQVFDSSFARGKPALLPL
                     DGLVPGWMEALPRMRVGDEWMLYLPPELGYGPQGQGPIPPNAVLIFRIKLLGMLSPD"
     gene            complement(944..>2032)
                     /locus_tag="VHN39_17890"
     CDS             complement(944..>2032)
                     /locus_tag="VHN39_17890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006274991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2818269.1"
                     /translation="AKRDDWTRDPFTLIEEGGYFYGRGAADDKAQAAIWVDTLIRYKT
                     EGFHPKRTIKMALTCGEEGGSPFNGASWLVQNKRDLIDAAFALNEGAGGQLDDHGKRI
                     AHTIEAGEKTPQSFKLEVTNPGGHSSRPVPDNAIYRLADAIEKIRAYEFPVMINDANG
                     AYLTKMSKAAPGEVGQAMAALVANPKDAHADAILSKDPGLHTMLRTTCVATMLSAGHA
                     ENALPQRATANINCRIFPGVSREAVRAKLIELIGDPQVAVIQAGAAGPRGEAPAPPLT
                     PQVLGPIEKVSAEMWPGIPVVPILQAGATDGKALTAGGIPTYGVQGLFYEPDLGRIHG
                     LNERIGVTSLYEGRDFLYKLVKIYADQP"
BASE COUNT          281 a          659 c          736 g          356 t
ORIGIN      
        1 gggtcgaagc ccggattgcc caccgcattg tcgggcggaa cgagctcgcc aaaagcgccc
       61 gtcggatagc catcatggtt gttgtagccg atgaccgagg gcgggaagcc gtcgccggac
      121 acgccgccgg gagtccatcc cgtggtgccg ttctcgaagc tgccgtcgac cagcagattg
      181 ccggccagcg ccggggtggc cgccagcgca gagagcgcga tcaggccaag gaaaatcttc
      241 ttcatttttg ctgtgtccaa tcagcaggca tggattatgc cggtccagag cttcacctta
      301 accactcatt agcgaacaac gctatcgggt tcgcctcctg ggcgaatctc cgcacgggcc
      361 gcggctcgtc tggtcggccg cgcccgtcgg ccgatgacgc ttccgcagag tccgtgtagg
      421 caggcctcag cagcctgttc ggccggagga caccgtgaag cgcctactcc ccattctgtt
      481 ggtcgccgtc ctcggcgcga gcggggcggc ctacgcccag gcgcccacgc cggcggcgcc
      541 cgccgtggtc tcgggcgcag acttcctggc gaggaacgcg catgcggccg gcgtcgtcac
      601 cctgccgtcg ggcctgcagt acaaggtggt ccagtccggg cccgcgggcc cgtcgccgaa
      661 gtccggcgac atcctcaagg tgcactacga ggggacgctg gtctcaggcc aggtgttcga
      721 ctcgtccttc gcccgcggca agcccgcgct gctgcctctg gacggcctcg tgccagggtg
      781 gatggaggcc ctgccgagga tgcgggtggg cgacgagtgg atgctctatc taccgcccga
      841 gctgggctat ggcccccagg gccagggacc gatcccgccc aatgcggtgc tgatcttccg
      901 catcaagctg ctcggcatgc tgtcgccgga ctgacggcgg cggctagggc tggtcggcgt
      961 agattttcac cagcttgtag aggaagtcgc ggccctcata gagcgaggtg acgccgatcc
     1021 gctcgttgag gccgtggatg cggccgaggt cgggctcgta gaacaggccc tggacgccat
     1081 aggtcgggat gccgccggcc gtcagcgcct tgccgtccgt ggcgcccgcc tggaggatcg
     1141 gcacgaccgg aatacccggc cacatctcgg cggagacctt ttcgatgggg cccagcacct
     1201 gcggggtcag tggcggagcg ggcgcctcgc cgcggggccc cgcggcgccg gcctggatga
     1261 ccgcaacctg cgggtcgccg atcagttcga tcagcttggc gcgcaccgcc tcgcggctga
     1321 cgcccgggaa gatacggcag ttgatgttgg ccgtggcgcg ctggggcagc gcgttctcgg
     1381 cgtggccagc gctgagcatg gtcgccacac aggtggtgcg cagcatggtg tgcaggcccg
     1441 ggtccttgga caggatcgcg tcggcgtggg cgtccttggg gttggcgacg agggccgcca
     1501 tggcctggcc aacctcgccc ggcgcagcct tggacatctt ggtcaggtag gcgccgttgg
     1561 cgtcgttgat catcaccggg aactcgtagg cgcggatctt ctcgatggcg tcggccagcc
     1621 ggtagatggc gttgtcaggc accggccgcg aggagtggcc gccggggttg gtgacctcca
     1681 gtttgaagct ctgcggggtc ttctcgccgg cctcgatggt gtgggcgatg cgcttgccgt
     1741 ggtcgtcgag ttggccgccg gcgccctcgt tcagcgcgaa ggccgcatcg atcaggtcgc
     1801 gcttgttctg gaccagccag gaggcgccgt tgaagggcga gccgccctcc tcgccgcagg
     1861 tcagcgccat cttgatggtg cgcttggggt ggaagccctc ggtcttgtaa cggatcaggg
     1921 tgtcgaccca gatggcggcc tgggctttgt cgtcggcggc gcctcgaccg tagaagtagc
     1981 cgccctcctc gatgagggtg aaggggtcgc gggtccagtc gtcccgcttg gc
//
LOCUS       DATAJL010000949         5242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_102854,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000949 DATAJL010000000
VERSION     DATAJL010000949.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5242
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102854"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..279
                     /locus_tag="VHN39_17895"
     CDS             <1..279
                     /locus_tag="VHN39_17895"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2818270.1"
                     /translation="AMGRPVIASNHGGTTETIADGISGWLVSPGEPTAWAAAMLKAID
                     LGPGKRSEMGQIGMNRTRQLYRVDAMCEATLAAYERVLEARLLPKGRA"
     gene            279..1268
                     /locus_tag="VHN39_17900"
     CDS             279..1268
                     /locus_tag="VHN39_17900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HEX2818271.1"
                     /translation="MARREAQKILVIKLSALGDFVLALAAMKKIRQAHPKAHISLLTT
                     PPFEGLAKASPYFNAVFTDGRPENFAQWLALRTRLRAAAYTRVYDLQTSSHSNRIFQV
                     LRPNPPPWSGIAFGCSLPHKNPLRNGMHTLERQADQLMYAGIWPDAPTEPGSAPAPDL
                     SWVLATAEGARPPAGGVKAKPYVMFVPGGSAHRPEKRWPVERYGELARILYARGLDIV
                     IIGGPQESALAQAIQRQVPRSRDLTGRTDFASIAVLGAKAALAIGNDTGPLHLAAAAG
                     APTVVLFSSVSDPALSAPRGKVAVLQAANLSELPVAKVAQAAAALLPTRQGAA"
     gene            1375..1896
                     /gene="infC"
                     /locus_tag="VHN39_17905"
     CDS             1375..1896
                     /gene="infC"
                     /locus_tag="VHN39_17905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEX2818272.1"
                     /translation="MNAPPVKDGLRINDEIRVPKVLLIDQNGEKQGVMPTSSAMEAAE
                     EAGLDLVEIVPNADPPVCKILDYGKFKFQEQKKKNEARKRQKVQEIKEIKLRPNIDIH
                     DYEVKQRSMNRFFEEGDKVKVTLRFRGRELAHPELGMKLLQRVRADFEPIAKCEYEPR
                     MEGRQMIMILAPR"
     gene            1907..2800
                     /gene="bla"
                     /locus_tag="VHN39_17910"
     CDS             1907..2800
                     /gene="bla"
                     /locus_tag="VHN39_17910"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF033105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="subclass B3 metallo-beta-lactamase"
                     /protein_id="HEX2818273.1"
                     /translation="MSRKAFGRLGAVAITAAAFAFPAAYLPAWAQPAAPADPHAPFPS
                     FKIGEGLYYVGASDYASYLIVTKAGLIVIDGGDATTGHQIVGNIRTLGFDPANIRILL
                     NTHEHFDHAAGLAELKRAAAKDVKFYASAADGAIVAAGGKGDPFLKGARFEYEPVQPD
                     VILKDGQKISLGGWTLTAHITPGHTPGCTTWTFPVTVAGKVRQALDHCSSSVLAGYRL
                     GKIETYPGQTADYEKSFVTWKSLPCEVFIASHGQFFNMKAKKAALDAGKVDAFVDPEG
                     CRKFYAGAEAAFRAELKKQNP"
     gene            2896..3501
                     /locus_tag="VHN39_17915"
     CDS             2896..3501
                     /locus_tag="VHN39_17915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818274.1"
                     /translation="MSGWFGKWIATGHERNGLRFWEIIAIVSYLMGTVVIAAYGAAVA
                     DGLRAFAILELVAGAAWGCGAVLGFLFGVPRLRTATGAQPGVGGESQFTPNTNLEQIS
                     DWLTKIIVGATLVQLNAVVARVQATAEAVGASLGGAHAAPMAGAAMIYFFTAGFMWGY
                     LWCSLRIFREMILLTGQDPASRAKAQEPPAPTTLAAGDGGP"
     gene            3512..4744
                     /locus_tag="VHN39_17920"
     CDS             3512..4744
                     /locus_tag="VHN39_17920"
                     /inference="COORDINATES: protein motif:HMM:NF024241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2818275.1"
                     /translation="MSDTAPREASTPSPWAAPSLIAVIFINMLGFGIIVPLLPFYAKS
                     MHAAPWQIALIFSAYAMGGFFGEPFWGRLSDRYGRKPLLISTITGNCLCYLALAFAPN
                     VAAAFVIRFLGGLMSGNGAVIQGYIADVTPPERRARMLSRQGAAWNVGMIVGPAVGGA
                     FAHTDMGPIGFRIPLFIASALSAVAVTGIILFIRESKVRDQSISHRPSRWAAVGEAVT
                     HPVIGRLMLLTFLVGFAFTGIESTFGLWGLARFGWGPRQISVCFAAVGIVAALTQFFV
                     TGPLSERFGEGRMLAIGMGVNALGSVLQPFSTGLVMTTALMCVTAIGQSVAWPNVGAL
                     ISRTADPHRQGQILGLNNAAGAFARFVGPLSAALTFAQISINAPFIQGALIVAPAILL
                     ALSAARRAPPHNVQGHEL"
     gene            4741..>5242
                     /locus_tag="VHN39_17925"
     CDS             4741..>5242
                     /locus_tag="VHN39_17925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2818276.1"
                     /translation="MSGAPKNLEAEERRSLIVLLTVIFLMIAGFGLVIPLLPFFARAF
                     NAPAWQVTLMFSAFSFGQFLGEPFWGRLSDRIGRKPVLIITITAVAVSYAALAFAPNI
                     AVAFAIRFATGLFAGNISTLQGAMADITPPEKRASRMGIMGAAFSAGFTTGPAIGGLL
                     AQPSRGA"
BASE COUNT          818 a         1855 c         1718 g          851 t
ORIGIN      
        1 gccatgggcc ggccggtcat cgcctcgaac cacggcggca ccaccgagac gatcgccgac
       61 gggatttccg gctggctggt ttctccaggc gagcccaccg cctgggccgc ggcgatgctg
      121 aaggccatcg acctcggccc cggcaagcgc agcgagatgg gccagatcgg catgaaccgc
      181 acccgccagc tctaccgcgt ggacgccatg tgcgaggcga ccctggcggc ctacgaacgc
      241 gtactggagg cccgtctctt gccgaaaggg agggcgtgat ggcccggcgc gaggcgcaga
      301 agatcctggt gatcaagctc tcggcgcttg gcgacttcgt gctggcgctg gcggccatga
      361 agaagatccg ccaggcccat cccaaggctc acatcagcct gctgaccacc ccacccttcg
      421 agggcctggc caaggcctcg ccctatttca acgcggtgtt caccgacggg cggccggaga
      481 acttcgccca atggctcgcc ctgcggacgc gcctgcgcgc ggcggcctac acccgggtct
      541 acgacctgca gacctcctcg cactccaacc gcatcttcca ggtgctgcgg cccaatccgc
      601 cgccgtggtc cggcatcgcc ttcggctgct cgctgccgca caagaacccc ttgcgcaacg
      661 gcatgcacac cctggagcgc caggccgacc agctgatgta cgccggcatc tggcccgacg
      721 cgccgaccga gcccggaagc gcgcccgctc cggacctctc ctgggtgttg gccaccgccg
      781 agggcgcgcg gccgccggcc ggcggggtca aggccaagcc ctatgtgatg ttcgtgcccg
      841 gcggctcggc gcaccgcccg gagaagcgct ggccggtgga gcgctacggc gagctcgccc
      901 gcattctcta cgcccggggc ctggacatcg tgatcatcgg gggaccgcag gagtcggcgc
      961 tcgcccaggc gatccagcgc caggttccgc ggtcccgcga cctcaccggc cgcaccgatt
     1021 tcgcctcgat cgctgtcctg ggcgccaagg ccgcgctggc catcggcaac gacaccggac
     1081 ccctgcacct ggccgccgcg gcgggcgcgc ccacggtggt gctgttctct tccgtctctg
     1141 acccggcgct ctcggcgccc aggggcaagg tcgccgtcct tcaggccgcc aatctgtcgg
     1201 agctgcctgt ggccaaagtg gcgcaggcgg cggcggctct gctacccacc cggcagggcg
     1261 cggcttgata gcgccggagc gctaaatcat atactgggaa gtagccggag cgcggacacg
     1321 cgccccggcg ttctcgttga aactatccta ggagcctcgc ctattcgccg tcccatgaac
     1381 gccccccccg tcaaagacgg gctgcgcatc aatgatgaaa tccgcgtccc caaggttctg
     1441 ctcatcgatc agaacggcga gaagcagggt gtgatgccca cctcctccgc catggaggcg
     1501 gccgaagagg cgggcctcga tctggtcgag atcgtcccca acgcggatcc gcccgtttgc
     1561 aaaatcctgg actacggcaa gttcaagttc caggagcaga agaagaagaa cgaggcgcga
     1621 aagcggcaaa aggttcagga aatcaaggag atcaaactcc gcccgaacat cgacatccac
     1681 gactatgaag tgaagcagcg ttccatgaac cgcttcttcg aggagggcga caaggtcaag
     1741 gtgaccctgc gtttccgcgg tcgtgaactg gcccaccccg agcttggcat gaagctgttg
     1801 caacgggtcc gcgcggactt cgagccgatc gccaagtgcg agtacgagcc gcgcatggaa
     1861 ggccgtcaga tgatcatgat cctggcgccg cgctagagga ccatcaatga gccgaaaagc
     1921 cttcggacgt ctgggagcgg tcgccatcac ggcggccgct ttcgcgtttc cggccgccta
     1981 cctgccggct tgggctcagc ccgcggcgcc ggctgatcca cacgcgccct tcccgtcgtt
     2041 caagatcggc gaggggctct attacgtcgg ggcctcggac tacgcgtcct acctgatcgt
     2101 caccaaggcc ggcctgatcg tcatcgatgg cggcgacgca acgaccggcc accagatcgt
     2161 gggcaatatc cggacgctcg gcttcgaccc ggcgaacatc aggatcctgc tcaacaccca
     2221 cgagcacttc gaccatgccg cgggcctggc cgaactgaag cgggccgcgg cgaaggacgt
     2281 gaagttctac gccagcgccg ccgatggggc gatcgtggcc gccggaggca agggcgaccc
     2341 gttcctgaag ggcgcccgtt tcgaatacga gccggtgcag cccgacgtga tcctgaagga
     2401 cggccagaag ataagcctgg gcggctggac gctgacggcc cacatcacgc ccggccacac
     2461 cccgggctgc accacctgga ccttcccggt gaccgtggcc ggcaaggtgc gccaggcgct
     2521 cgaccactgc tcctccagcg tcctggccgg ctacaggctc ggcaagatcg agacctaccc
     2581 cggccagacc gccgactacg aaaagagctt cgtgacctgg aagtccctgc cctgcgaggt
     2641 gttcatcgcc tcccacggcc agttcttcaa catgaaggcc aagaaggccg cgctcgacgc
     2701 cggcaaggtc gacgccttcg tcgaccccga gggctgtcgg aagttctacg ccggcgccga
     2761 ggccgccttc cgcgcagagc tcaagaagca gaacccctag gcatcgccta cgtggggtag
     2821 cgtgcctcgg cactggctca actagacatt gcgttcattt cgcgcaacaa atcgcgcgag
     2881 gctgggggcg gcgcgatgtc cggatggttc ggcaaatgga tcgcgaccgg tcacgagcgc
     2941 aacgggctgc ggttctggga aatcatcgcg atcgtctcct acctgatggg aacggtggtg
     3001 atcgcggcct acggcgcggc ggtggcggac gggctcaggg ctttcgccat cctggagctg
     3061 gtggccggcg cagcctgggg ctgcggcgcg gtcctggggt tcctgttcgg ggttccgcgt
     3121 ctgcggacag cgaccggcgc gcagcccggc gtcggcggag agtcccaatt cacgccgaac
     3181 accaacctcg agcagatttc cgactggctg accaagatca tcgttggcgc gaccctggtg
     3241 caactgaacg ccgtggtcgc ccgcgtccag gccaccgcgg aggccgtcgg agccagcctc
     3301 ggcggcgccc acgccgcgcc aatggccggc gcggcgatga tctacttctt cacggcggga
     3361 ttcatgtggg gctacctctg gtgcagcctg cgcatcttcc gtgaaatgat cctgctgacc
     3421 ggtcaggacc cggcgagccg ggccaaggcg caggagcctc ccgcgcccac cacccttgcc
     3481 gccggagacg gcgggcctta acaccccgcc catgtccgac actgcgccgc gggaggcgtc
     3541 gacgccgtcc ccgtgggctg cgccgtcgct gatcgccgtc atcttcatca acatgctggg
     3601 cttcgggatc atcgtcccgt tgctgccctt ctatgccaag tcgatgcacg cggcgccctg
     3661 gcagatcgcg ctgatcttct cggcctacgc catgggcggg ttcttcggcg aaccgttctg
     3721 gggacgtctg tccgaccgct atgggcgcaa gccgctgctg atctcgacga tcaccggcaa
     3781 ctgcctctgc tacctggccc tggccttcgc gcccaatgtg gcggcggcct tcgtaatccg
     3841 cttcctcggc gggctgatga gcggcaacgg cgcggtgatc cagggctata tcgccgacgt
     3901 caccccgccg gagcgcaggg cgcggatgct gtcgcggcag ggggcggcct ggaacgtcgg
     3961 catgatcgtg gggcccgcgg tgggcggcgc cttcgcccac accgacatgg ggccgatcgg
     4021 tttccggatt cccctgttca tcgcctcggc cctgtcggcg gtggcagtga ccgggatcat
     4081 cctcttcatc cgcgagagca aggtgcgcga ccagtcgatc agccaccggc ccagccgctg
     4141 ggcggcggtg ggcgaggctg tgacccatcc ggtgatcggg cggctgatgc tgctgacctt
     4201 cctggtgggc ttcgccttca ccggcatcga gtcgaccttc ggcctctggg ggctcgcgcg
     4261 gttcggctgg ggaccccgac agatcagcgt ctgtttcgcc gccgtgggca tagtcgccgc
     4321 gctgacccag ttcttcgtca ccggcccctt gtccgagcgg ttcggcgagg gccggatgct
     4381 ggccatcggc atgggggtga acgccctggg ctcggtcctg cagccgttct ccacgggcct
     4441 cgtgatgacc acagccctga tgtgcgtcac cgccatcggg cagtcggtgg cctggccaaa
     4501 tgtcggggcc ctgatctcgc gcaccgccga tccgcaccgc cagggccaga tcctgggcct
     4561 gaacaacgcc gccggggcct tcgcacggtt cgtggggcca ctctcggccg cgctgacctt
     4621 cgcccagatc agcatcaatg cgcctttcat ccagggcgcc ctgatcgtcg cgccggcgat
     4681 ccttctggcg ctcagcgccg ctcgccgggc cccgccgcac aacgttcagg ggcatgaact
     4741 gtgagcggcg ccccaaagaa cctggaggcg gaggagcgga ggtcgctgat cgtcctgctc
     4801 accgtcatct tcctgatgat cgcgggcttt ggcctggtga ttccgctgct gccgttcttc
     4861 gcgcgtgcgt tcaatgcgcc cgcctggcag gtgacgctga tgttctcggc cttctccttc
     4921 ggccagttcc tgggcgagcc cttctggggc cggctgtcgg accggatcgg gcgcaagccc
     4981 gtgctgatca tcaccatcac cgccgtggcc gtgagctacg cggcgctggc cttcgccccc
     5041 aacatcgcgg tcgccttcgc gatccggttc gccaccggcc tcttcgcggg caacatctcg
     5101 accctgcagg gcgccatggc cgacatcacc ccgccggaga agcgcgcgag ccgcatgggg
     5161 atcatgggcg cggcgttcag cgccggcttc accaccggcc cggcaatcgg cggcctgctg
     5221 gcccagccga gccggggcgc cc
//
LOCUS       DATAJL010000950         2459 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_111428,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000950 DATAJL010000000
VERSION     DATAJL010000950.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2459)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2459)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2459
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111428"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VHN39_17930"
     CDS             <1..264
                     /locus_tag="VHN39_17930"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEX2818277.1"
                     /translation="DQVRMMTPGAPEELDIDLWSTAITFEKGHRIAVHITSSNSPRFE
                     VNPNTGEAAGEHKQAPRVATNSVYMDVSHPSALVLPVVYPEGK"
     gene            complement(274..444)
                     /locus_tag="VHN39_17935"
     CDS             complement(274..444)
                     /locus_tag="VHN39_17935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818278.1"
                     /translation="MPDRNDTDGAGDAKPGGPDDYPHDENYRPGYHEGGSRFGFFNGE
                     DNAEAPPSGGKP"
     gene            complement(513..1052)
                     /locus_tag="VHN39_17940"
     CDS             complement(513..1052)
                     /locus_tag="VHN39_17940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2818279.1"
                     /translation="MSATLSWRDEVVGLIPALRAFAWSLSHNGSDADDLVQDTLIKAW
                     TNRAKFEPGTNLRAWLFTILRNTYYTAMLRRRREVRDETGEIAGRLRTPATQDWSLAM
                     RALQAALQKLPPEHREALILVGAAGLSYEEVAEICGCALGTIKSRVNRARARLLKIMD
                     VEYATDLMALQIEPVAARA"
     gene            1273..>2459
                     /gene="egtB"
                     /locus_tag="VHN39_17945"
     CDS             1273..>2459
                     /gene="egtB"
                     /locus_tag="VHN39_17945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013479367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HEX2818280.1"
                     /translation="MSQSEDPQALARAQALSRGAEPAPAALHRYRAVRQATEALTRWL
                     TPEDQLAQSMSDASPTKWHLAHTTWFWETFLLVPSLPAYKAFDPRFHYLFNSYYEALG
                     PRQPRPERGLLTRPSLDDVIAYRAHVDQAMGRLLAQSGDSLADLLDLGLAHEEQHQEL
                     ILMDILHLFAQSPLQPAYAPPRAGQPGAAPEPPRFVGFEGGLVEIGHSGGGFAFDNAS
                     PRHKVWLESFDLADRLVTNAEWLAFMADGGYRRPELWLSEGWARARAEGWDAPLYWQP
                     PLSEQDEGGGWNAMTLHGLRPLDPAAPVSHVSFYEAEAYAAWAGARLPTEAEWEHAAQ
                     GLAVAGNFSSSGRLAAAAPPPATGLRQMFGDLWEWTRSAYAPYPGFKPAGGAVGEYNG
                     KFMA"
BASE COUNT          349 a          888 c          826 g          396 t
ORIGIN      
        1 gaccaggtca ggatgatgac gcccggcgcg ccggaggagc tggacatcga cttgtggtca
       61 accgccatca ccttcgagaa aggccaccgc atcgccgtcc acatcacctc gtccaacagc
      121 ccgcgcttcg aggtgaaccc caataccggg gaggcggcgg gcgagcataa gcaggccccg
      181 cgggtggcca ccaacagcgt ctacatggac gtgagccacc cctcggccct ggtgttgccg
      241 gtggtctatc cggaggggaa gtaagctcgc gccctagggc ttcccgcccg acggcggcgc
      301 ctcggcgttg tcctcgccgt tgaagaagcc gaagcggctg ccgccctcgt ggtagccggg
      361 gcgataattc tcgtcgtgcg gatagtcgtc ggggccgccg ggcttggcat cgccggcgcc
      421 gtccgtgtcg ttgcggtcag gcatggcgtc gatccttctg cggcgatgtc cgctgctcac
      481 tgaacgccag ggccagaccg ccgttccagg cctcaggccc gcgccgcgac gggctctatc
      541 tgcagcgcca tgaggtccgt ggcgtactcg acgtccatga tcttcaggag ccgcgcgcgg
      601 gcgcggttca cccggctctt gatggtcccc agggcgcagc cgcaaatctc ggccacctcc
      661 tcgtaggaga ggcctgccgc ccccaccagg atcagggcct cgcggtgctc cggcgggagc
      721 ttctgcaggg ccgcctgcag ggcgcgcatg gcgaggctcc agtcctgggt cgcaggcgtc
      781 ctcagccggc cggcgatttc gccggtttcg tcgcgcacct cgcggcggcg gcgcagcatt
      841 gctgtgtagt aggtattgcg caggatcgtg aacagccacg cccgaaggtt ggtgcccggc
      901 tcgaacttcg cccggttggt ccaggccttg atcaaagtgt cctgcaccag gtcgtcggcg
      961 tcggatccgt tgtggctgag cgaccaggca aaagcccgca gcgccgggat caagccgacg
     1021 acctcgtccc gccagctgag cgtcgcgctc atcgcaccct cgatacgctt gccgatcttg
     1081 cgaccggtcg ctgggcctcc ccaggccttc gatcaacgcg agccccggcc atccgttccg
     1141 gcgatcattc gtcgggcagg gcgctttttt cggaaccttg ttcgcccgcg gcggttggcg
     1201 ccggagcctc gaatgcttag gtctggtcct tgcggggagg cgtgtccgtc agcgggcgcg
     1261 gagaggaggc agatgagcca gtccgaagac ccgcaggcgc ttgcccgcgc tcaggcgctg
     1321 agccgcggcg ccgagcccgc ccccgccgcg ctccaccgct accgcgccgt gcgtcaggcc
     1381 accgaggcgc tcacccgctg gctgacgcca gaagaccagc tcgcccagtc gatgtccgac
     1441 gccagcccca ccaagtggca cctggcccac accacttggt tttgggagac cttcctgctg
     1501 gtcccgagcc tgcccgccta caaggccttc gacccgcgct tccattacct tttcaactcc
     1561 tactacgagg cgctcgggcc gcgtcagccg cggccggagc ggggtctgct cacccgcccg
     1621 tcgctggacg acgtgatcgc ctaccgggcg catgtggacc aggccatggg ccgcctgctg
     1681 gcccaaagcg gcgacagcct cgccgacctg ctggacctgg gcctggctca tgaggagcag
     1741 catcaggagc tgatcctgat ggatatcctg cacctcttcg cccaatcgcc cctgcagccg
     1801 gcctatgcgc cgccccgggc cggccagccc ggtgcagcgc cggagccgcc gcgcttcgtg
     1861 ggctttgagg gtggtctggt ggagatcggc cattccggcg gcggcttcgc cttcgacaac
     1921 gcgagcccgc gtcacaaggt ctggctggag tccttcgacc tcgccgaccg gctggtgacc
     1981 aacgcggaat ggctggcctt catggccgac ggcggctacc ggcgcccgga actctggctc
     2041 tccgaaggct gggctcgcgc ccgggccgag ggctgggacg cgccgctcta ttggcaaccg
     2101 ccccttagcg aacaggatga aggtggcggc tggaacgcca tgaccctcca tggtctgcgg
     2161 ccgctcgatc ccgccgcccc ggtcagccac gtcagcttct acgaggccga ggcctatgcc
     2221 gcctgggccg gcgcgagatt gcctacggag gcagaatggg agcacgccgc ccagggcctc
     2281 gcggtcgccg gcaacttctc cagttccggg cgcctcgccg ccgcggcccc gccgccggcc
     2341 acgggcctgc gtcagatgtt cggcgacctc tgggaatgga cccgcagcgc ctacgcgccc
     2401 tatccggggt tcaagccggc cggcggggcg gtgggcgagt acaacggcaa gttcatggc
//
LOCUS       DATAJL010000951         2197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_124897,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000951 DATAJL010000000
VERSION     DATAJL010000951.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2197
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124897"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..823)
                     /locus_tag="VHN39_17950"
     CDS             complement(<1..823)
                     /locus_tag="VHN39_17950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEX2818281.1"
                     /translation="MWPRGDNAPSSRQAAVIDVGSNSVRLVIYRLDGRAIWTVYNEKA
                     LAGLGRDLPSTGRLSPEGVEVALTAIRRFRALLDGWRAEDVTAAATAAVREAADGPAF
                     LKRVREETGLTVRILTGEEEARYAALGVIAGQPDAQGVVGDLGGSSLELVRLGAATSP
                     EEGATLPLGPFALGAPRTLDTDRTRRIIESALAPHAERFATRHFHAVGGAWRNLALFQ
                     MELADYPLHVAHQYEMSRADALEVARLVARQSRNSLERMQGLSKKRIETLPYSAVV"
     gene            complement(804..>2197)
                     /gene="ppk1"
                     /locus_tag="VHN39_17955"
     CDS             complement(804..>2197)
                     /gene="ppk1"
                     /locus_tag="VHN39_17955"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009358 - polyphosphate kinase complex
                     [Evidence IEA];
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006799 - polyphosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HEX2818282.1"
                     /translation="FEMRLRQRRLGSVVRIELEAMMPEELRHFIAGNLHAQPQDIILI
                     EGLLGLDELTQLIPADRPDLKFKPFEPRFPERIRDHGGDCFAAIREKDILVHHPFESF
                     DVVVQFLRQAARDPNVLAIKQTLYRTSHDSPIVAALIEAAEAGKNVTAVVEIKARFDE
                     AANLKWARDLERAGVHIVFGFVEYKTHAKLSTVVRREGDVLRSYCHFGTGNYHPITAR
                     FYTDLSLFTTDPALGRDSARLFNYVTGYAQPEGLEKLSFSPITMKRDLLDLIAREVLN
                     CAEGRPAGIWAKMNSVVDPEIIDALYAASQAGVEIDLVVRGICCLRPGIAGLSENIRV
                     KSIVGRFLEHGRIVAFANGAPLPSSEARVFISSADWMPRNLDRRVEALTPIENPTVHQ
                     QVLQQIMLANLKDEAQSWTLDSHGYYTRDPSWDHPGAFSAHEYFMTNPSLSGRGQKVK
                     DMPRAIDHVASRG"
BASE COUNT          332 a          693 c          819 g          353 t
ORIGIN      
        1 ggaccacggc ggagtagggc agggtctcga tccgcttctt ggagagcccc tgcatgcgct
       61 cgagcgagtt gcgcgactgg cgcgcgacga ggcgcgcaac ctccagggcg tcggcgcggc
      121 tcatctcgta ctggtgcgcg acgtgcaggg gatagtcggc gagctccatc tggaagagcg
      181 ccaggttccg ccacgcgccg ccgaccgcat ggaaatgccg cgtggcgaag cgttcggcgt
      241 gcggcgcgag tgcgctttcg atgatccggc gcgtgcggtc ggtgtcgagg gtgcgcggcg
      301 cgccgagggc aaagggaccc agcggcaggg tggcgccttc ctccggcgag gtggcggcgc
      361 ccagccgcac cagctccagg ctggagccgc ccaggtcgcc caccacgccc tgggcgtcgg
      421 gctggccggc gatgacgccc agggcggcgt agcgggcttc ctcctcgccg gtgaggatgc
      481 ggacggtcag gccggtctcc tcgcgcacgc gcttcaggaa ggcggggccg tcggcggcct
      541 cccggacggc ggcggtggcc gcggcggtga cgtcctcggc gcgccagccg tccagcaggg
      601 cgcgaaaccg ccggatggcg gtgagcgcca cctccacgcc ctcgggcgac aggcggccgg
      661 tggagggcag gtcgcggccg aggccggcca gcgccttctc gttgtagacg gtccagatgg
      721 cgcggccgtc cagccggtag ataaccaagc ggacggagtt cgacccaacg tcgatgacag
      781 ccgcctgtcg ggaagagggc gcgttatccc cgcgaggcca catgatcgat cgcgcgcggc
      841 atgtccttca ccttctgccc tctacctgaa aggctggggt tggtcatgaa atactcgtgc
      901 gcagaaaagg cgcccggatg atcccaggag ggatcgcggg tgtagtagcc gtgggaatcg
      961 agcgtccagc tctgggcttc gtccttcagg ttggcgagca tgatctgctg caggacctgc
     1021 tggtggaccg tcgggttttc gatgggcgtc agggcctcga cccggcggtc gaggttgcgc
     1081 ggcatccagt cggctgagga gatgaacact cgggcttccg acgacgggag tggcgcgccg
     1141 ttggcgaagg cgacgatccg gccgtgctcc aggaagcggc cgacgatgga tttcacgcgg
     1201 atgttttccg acaggcccgc gatgcccggg cgcaggcagc agatgccgcg taccaccagg
     1261 tcgatctcca cgccggcctg gctggcggcg tagagggcat cgatgatctc ggggtcgacc
     1321 actgagttca tcttggccca gatgccggca gggcggccct cggcgcagtt caggacctcg
     1381 cgggcgatca ggtccagcag gtcccgcttc atggtgatcg gcgagaagga gagcttctcc
     1441 aggccttcgg gctgggcgta gccggtgacg tagttgaaca gccgcgcgct atcgcggccc
     1501 agcgccgggt cggtcgtgaa cagcgaaagg tcggtgtaga atcgcgccgt gatcgggtgg
     1561 tagttgccgg tcccgaagtg gcagtaggac cggagcacgt ccccctcgcg ccgcaccacg
     1621 gtcgagagct tggcgtgggt cttgtactcc acgaagccga agacgatgtg gacgccggcc
     1681 cgctccaggt cccgcgccca tttcaggttc gccgcctcgt cgaagcgggc cttgatctcc
     1741 accacggcgg tgacgttctt gccggcctcg gccgcctcga tgagggcggc gacgatcggg
     1801 ctgtcgtggc tggtgcggta gagggtctgc ttgatcgcca gcacgttcgg atcgcgggcg
     1861 gcctggcgca ggaactgcac caccacgtcg aagctctcga aggggtgatg gaccaggatg
     1921 tccttttcgc ggatggccgc gaaacagtcg ccaccgtgat cgcggatacg ttccgggaag
     1981 cgcggctcga agggcttgaa cttcaggtcc ggtcggtcgg ccgggatcag ctgggtgagt
     2041 tcgtccaggc ccaggaggcc ctcgatcagg atgatgtcct ggggctgggc gtgcagattg
     2101 ccggcgatga aatggcgcag ctcctcgggc atcatggcct cgagttcgat gcgcaccacc
     2161 gagcccagcc gccgctggcg caggcgcatc tcgaact
//
LOCUS       DATAJL010000952         1653 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_103106,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000952 DATAJL010000000
VERSION     DATAJL010000952.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1653)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1653)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1653
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_103106"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..269)
                     /locus_tag="VHN39_17960"
     CDS             complement(<1..269)
                     /locus_tag="VHN39_17960"
                     /inference="COORDINATES: protein motif:HMM:NF016430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor"
                     /protein_id="HEX2818283.1"
                     /translation="MLFLASRLRSVAEAEDLIQDLYLKVAAIEPGVDVRAPAALLYRM
                     AANLMVDHVRSAQRASRRNAQWRLETRVTMRSVDVVSEPAADEALV"
     gene            complement(481..870)
                     /locus_tag="VHN39_17965"
     CDS             complement(481..870)
                     /locus_tag="VHN39_17965"
                     /inference="COORDINATES: protein motif:HMM:NF013540.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2818284.1"
                     /translation="MPVVVDRKAPAEVDVSLGAAIRLRRRTLGISQEMLAEKCGVSFQ
                     QIQKYENGSNRISFSRLVQIATALHCRVNDLIDVLAGADDGPQDLALRIRMGLPGALE
                     LLEAFEAMSPAMRAPLVEFSRALADRA"
     gene            complement(1344..>1653)
                     /locus_tag="VHN39_17970"
     CDS             complement(1344..>1653)
                     /locus_tag="VHN39_17970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818285.1"
                     /translation="PIDQIANGVFKKNCPLWTYILAEAAHHITPVAIPVSGPATTVTT
                     PQLGPVGGRIVAEVIVGLVFGDPASVLSLDPTWAPTTGPAFALKDFVAYALGRGPALH
                     "
BASE COUNT          285 a          542 c          602 g          224 t
ORIGIN      
        1 accagggcct cgtcggcggc aggttcagag accacatcca ccgaacgcat ggtcacccgg
       61 gtctcgagcc gccactgggc gttgcgccgc gaggcgcgct gggcgctgcg cacatggtcg
      121 accatcaggt tggcggccat gcggtagagg agcgcggccg gcgcgcggac atcgacgccc
      181 ggctcgatgg cggcgacctt cagatagaga tcctggatca ggtcctcggc ttcggccacg
      241 gagcgcagcc ggctcgcgag gaacagcaca aggttctccc gcttctcgag aaaggtcgcg
      301 agaagcaggt tgtctccccc gcgccgttcg gacggcccag acgcggccaa cgccattccc
      361 cctacgattc ccccgtggct tcgcgagcgg gcggagtgtg cgacatggcg gcggcgtggg
      421 gaatagccaa ggttgtcgcg gcgtcctcag gaccgcccgg gcggcggatg gagccaggcg
      481 ctaggcccgg tcggcaagcg cgcgggagaa ctcgaccaag ggcgcgcgca tcgccgggga
      541 catggcctcg aaggcctcca gcagctcaag ggcgccggga agccccatgc ggatgcgcag
      601 ggcaaggtcc tgaggaccgt catcggcgcc ggccagcacg tcgatcaggt cgttgacgcg
      661 gcaatgcagg gcggtggcga tctgcaccag gcgcgagaac gagatgcggt tggagccgtt
      721 ctcgtacttc tgaatctgct ggaagctgac accgcacttc tcggcgagca tctcctgcga
      781 aatccccagt gtccgccggc gcagccggat cgcggcgccc agggagacat ccacttcggc
      841 cggggccttg cgatcaacaa caacaggcat gctttgctcg tcccttcggt gtctcatcgt
      901 gagccacacg ggccgcgaag gggcaaatcc cgagccagaa caggagcatg cggcggagtg
      961 ccgcaggagt acggaggcgg gcgcgcgcgc ctgtcgtttt atcctaggcc gggaccggcc
     1021 gcccccgccg ggcgcggagc atgccgccaa ggccggcaaa ccccgccagc atcagcgccc
     1081 aactcgcggg ctccggaacg cctgggacgg tgtcgatgct gaagttgtcc aggtagccgg
     1141 tgttggacga gccgccgaag atgtcgaaga tggcgtcgcc gaaggtcccg acattggcgt
     1201 tgttgcaggc gcagttggag ccgcagaagc tgaggcccga ggctagcgtc gagcgacctc
     1261 acccgagacg cgaaaagcta tcgggaggcg ggaggttcga ggaccggcgg ggacgccaaa
     1321 cgccgtcccc gcgtccccgc gcgtcagtgg agcgccgggc cccggcccag ggcgtaggcc
     1381 acgaaatcct tgagcgcgaa ggccggaccg gtggtcggcg cccaggtggg gtcgagcgac
     1441 agcaccgaag cggggtcgcc gaacaccagg cccacgatca cctcggccac gatacggccg
     1501 cccaccgggc cgagctgggg cgtcgtcacc gtcgtggcgg ggcccgagac gggaatcgcc
     1561 accggcgtga tgtggtgcgc cgcctcggcc aggatgtagg tccacagcgg gcagttcttc
     1621 ttgaagacgc cattggcgat ctggtcgatg ggg
//
LOCUS       DATAJL010000953         2542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_76714,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000953 DATAJL010000000
VERSION     DATAJL010000953.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76714"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..779
                     /locus_tag="VHN39_17975"
     CDS             <1..779
                     /locus_tag="VHN39_17975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818286.1"
                     /translation="EVTGDRRLIARLHAKAPTSAKPELAALDQASQAAWATWRTTHNP
                     GVLFTFAGDPELVRAVRDAWPKRTADVDRILDALEQTLEINALFPGKGWESNELRSRF
                     NRANFVAHLDRAAAQGRRPKVMIKMGESHTMRGVSWTGNFDIGSLVPEVAALRGGKAF
                     SCLVGGGRNSRHGVLNPTNMSVADAPVDMFQQLGLRFLVDAIPGDGPQLVDLRPLRGL
                     LSSASNLKALNNPDAVRTIFATETMVVWHGSTATEMLVKA"
     gene            851..>2542
                     /locus_tag="VHN39_17980"
     CDS             851..>2542
                     /locus_tag="VHN39_17980"
                     /inference="COORDINATES: protein motif:HMM:NF013927.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0017000 - antibiotic biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin acylase family protein"
                     /protein_id="HEX2818287.1"
                     /translation="MAMLAAATAAGATAATAPAKAPPATPAAKAPAPAGYHATVVRTA
                     YGVPHITAANYAGLGYGAGYAAAQDNICDFADRMLTVNAQRARYLGPGDKNANVVSDL
                     YHQRLIATGRLEQLLNADPKSLERPSADARALVRGYAAGVNRYVRDTGVANLPVACKG
                     AAWIRPYAEKDIWRVSLAGQQPNQLAGVAGASPPGGPEPIGAAPIDGGPSNTPQGQGS
                     NAYALGREVTKTGHGVLLGNPHYPWDGINRFTRLHLIIPGKLNIVGAGLENSPVVGIG
                     HNQWVAWSHTVSTARRFGYFELTLDPKDPTAYVFDGRSTPMTRTQVTVQVKTDKGLIP
                     ITRTYYDTRFGPMVKTPLTPWTKDKGFALRDAPVNLRGTDQYLSMWQAHNVHELAAAL
                     SKYQGATFNTTAVDAGGEAFFGDIGSLPYVTDAKAAMCATSPTGKKGWADNRIPVLDG
                     SRSACEWDSDPHAATGGIFPASAEPQIFRNDFTENSNDSYWLSNPNQPLSGYGRIFGD
                     EATTRSLRTRLGLKMIGDRVAGRDGLGAPKFDLKSLEGVVFNDRNLGGEMTRDDLV"
BASE COUNT          428 a          913 c          842 g          359 t
ORIGIN      
        1 acgaagtcac cggcgaccgg cgcctgatcg cgcggctgca cgccaaggcg ccgacctcgg
       61 cgaagcccga gcttgcggcc ctcgaccagg cttcgcaggc cgcctgggcg acctggcgta
      121 cgacgcacaa tcctggcgtc ctcttcacct tcgcgggcga ccccgagctg gtccgcgcgg
      181 tgcgcgacgc ctggccgaag cggacggcgg acgtggacag gatcctggat gccctcgaac
      241 agaccctgga gatcaacgcc ctctttcccg gcaagggctg ggagtccaac gagctgcgca
      301 gccgcttcaa ccgcgccaac ttcgtggccc acctcgaccg ggccgcggcc cagggacggc
      361 ggccgaaggt gatgatcaag atgggcgaat cccacaccat gcgcggcgtc agctggacgg
      421 ggaacttcga catcggatct ctggtcccgg aggtcgcggc tctgcgcggc ggcaaggcgt
      481 tctcctgcct ggtgggcggt ggccgcaact cgcgccacgg cgtgctgaac cccaccaaca
      541 tgtcggtggc cgacgcgccg gtggacatgt tccagcaact ggggctgcgg ttcctggtgg
      601 acgccattcc cggcgacggc ccccaacttg tggaccttcg ccccctacgc ggcctgctga
      661 gctccgcctc gaacctgaaa gccctgaaca accccgacgc cgtgcgcacg atcttcgcca
      721 ccgagacgat ggtggtctgg catggttcga cggccaccga gatgttggtg aaggcctagc
      781 ccggaccgca aacctcgccc atggtgcgct caaaatcagg ggtgggaaca tgcggttgag
      841 aacagttgcg atggcgatgc tggcggccgc gacggcggca ggggcgacgg cggcgacggc
      901 gcccgccaag gctccgcccg ccacgcccgc ggccaaggct ccggcgcccg ccggctatca
      961 cgcgacggtc gtgcgtacgg cctacggagt cccgcacatc accgcggcca actatgccgg
     1021 cctgggctat ggggccggct acgccgccgc ccaggacaac atctgtgact tcgccgaccg
     1081 aatgctgacc gtgaacgccc agcgcgcgcg ctacctgggt cctggcgaca agaacgccaa
     1141 tgtggtgagc gacctctatc accagcggtt gatcgcgacc gggcgactgg agcaactgct
     1201 gaacgccgac ccgaagagcc tggaacggcc ctcggccgat gcgcgcgccc tggtccgggg
     1261 ctatgcggcg ggcgtcaacc gctacgtccg tgacaccggc gtcgcgaacc ttcccgtcgc
     1321 ctgcaagggg gcggcctgga tccggcccta cgcggagaag gacatctggc gcgtcagcct
     1381 ggcggggcaa cagccgaacc aattggccgg cgtcgcgggc gcctcgccgc ccggtgggcc
     1441 cgagcccatc ggcgcggcgc cgatcgacgg cggaccctct aacactccgc agggccaggg
     1501 cagcaacgcc tatgcgctgg gccgcgaggt gaccaagacc ggccacggcg tgctgctggg
     1561 caatccgcac tatccctggg acggcatcaa ccgcttcacc cgcctgcacc tgatcatccc
     1621 gggcaagctg aacatcgtcg gggcgggcct ggagaacagc ccggtggtcg gcatcggcca
     1681 caaccagtgg gtcgcctggt cgcacacggt ctccacggcc cgccgtttcg gctacttcga
     1741 gctgacgctc gatcccaagg atcccacggc ctacgtcttc gacggcaggt cgacgccgat
     1801 gacgcgcact caggtcaccg tgcaggtgaa gaccgacaag ggcctgatcc cgatcacccg
     1861 gacctactac gacacccgct tcgggccgat ggtgaagacg ccgctcacgc cctggaccaa
     1921 ggacaagggc tttgcgctcc gggacgcgcc ggtgaacctg cggggcaccg accagtacct
     1981 gtccatgtgg caggctcaca acgtccacga gctcgccgcc gcgctcagca agtatcaggg
     2041 cgcgaccttc aacacgaccg cggtggacgc cggcggcgag gcgttcttcg gcgacatcgg
     2101 ctcgctcccc tatgtcaccg acgccaaggc ggcgatgtgc gccacctcgc ccacgggcaa
     2161 gaagggctgg gcggacaacc gcatccccgt gctggacggt tcgcgctcgg cctgcgagtg
     2221 ggattccgat ccccacgcgg ccaccggcgg catcttcccg gcctcggccg agccgcagat
     2281 cttccgcaac gacttcaccg agaattccaa cgacagctat tggctctcca atcccaatca
     2341 gccgctgtcg ggctatggcc gcatcttcgg cgatgaggcg accacccggt cgctgcgcac
     2401 gcgactgggc ttgaagatga tcggcgaccg ggtggcgggc cgcgacggcc tgggcgcgcc
     2461 caagttcgac ctcaagagcc tcgagggtgt ggtcttcaac gaccgcaatc tgggcggcga
     2521 gatgacccgc gacgacctgg tg
//
LOCUS       DATAJL010000954         8867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_111492,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000954 DATAJL010000000
VERSION     DATAJL010000954.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 8867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8867
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111492"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..278
                     /locus_tag="VHN39_17985"
     CDS             <1..278
                     /locus_tag="VHN39_17985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HEX2818288.1"
                     /translation="ISPFKPAGGISKARLETLVTEIRAVLTEAIAAGGSTLRDFAQTD
                     GALGYFQHRFRTYDREGEPCANDPNVGVIARKVQAGRSTFYCPACQT"
     gene            275..1168
                     /locus_tag="VHN39_17990"
     CDS             275..1168
                     /locus_tag="VHN39_17990"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HEX2818289.1"
                     /translation="MTLRLKSLAVALTALALAIAFGGAWAGAAFAEVPVWVVKDKDSE
                     VVLFGSIHVLPPGLDWAPPVLDRALRTADDIWFELPIDPKSEAETAALATQLGVLPPD
                     GSLFKLLGPQDGALMSKVAQALDVSPALLDRLQPWLAEIALAGGAYRKVGADANSGVE
                     NTIAAMATPKAKRKAFETPAEQIALLSGGAMDEQIASLRETMHELDEQPDEFTALVRA
                     WVDGDVQALDREALAPIRNSSPALFKRLVLDRNARWTQVLDARLKGHGRTVVVVGIGH
                     LIGPDGVPARLRALGYSVTGP"
     gene            1219..1995
                     /locus_tag="VHN39_17995"
     CDS             1219..1995
                     /locus_tag="VHN39_17995"
                     /EC_number="4.2.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020044271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase"
                     /protein_id="HEX2818290.1"
                     /translation="MTLQTLIVERHDAVTLIRLNRPEALNALNGQLMDELTATLDETE
                     ADASVRCVVITGSDRAFAAGADIKEMASKSYAEVFTEDFITRNWERVTRCRKPVIAAV
                     AGYALGGGCELAMMCDFIIAADNARFGQPEINLGVIPGAGGTQRLTRFVGKSKAMDMV
                     LTARMMNAEEANQCGLVSRVVPLADLISTAMEAAQKIAALSPNSVMIAKELVNAAYET
                     PLSQGVKMERRLFHSLFAFDDQKEGMAAFVEKRPAKFTGK"
     gene            2127..2396
                     /gene="rpsT"
                     /locus_tag="VHN39_18000"
     CDS             2127..2396
                     /gene="rpsT"
                     /locus_tag="VHN39_18000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017505938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000312 - plastid small ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEX2818291.1"
                     /translation="MANTPGSKKAVRKIARRTEVNTARRSRVRTFLRKFDEALTGGDA
                     AAAKDAFVKAQSELMRAVSKGVVHKNTGSRKVSRLAAQLRKMATA"
     gene            2806..4266
                     /gene="dnaA"
                     /locus_tag="VHN39_18005"
     CDS             2806..4266
                     /gene="dnaA"
                     /locus_tag="VHN39_18005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEX2818292.1"
                     /translation="MMSRGAAGAMASAPAGVVWTKTCLVLKRELGEATFGSWLGQAAL
                     RETGDEVCLVAATGVARDWIARHAWRRIGELWAQNDPLGRRLDLKSRMEFDSDGLVAA
                     SAALTPAASALAGMGAAATAPDVFEVEADPAPAADRQGRLLGLQERFSFDTFVAGPSN
                     EFAFAVARRVATWSDGHFNPVMFHGPYGFGKTHLLNALAWEAMRNEPTKRVVYLTAEK
                     FTSTFVKALQDKQTAAFKDELRNADLLLIDDVHFVAGKPSTQEELFHTLIALVEDGRR
                     VVMTADRSPTELSEMEPRLRSHLQSGLVCGIEPADRTLRLGILERKLQTLAQQGKFLP
                     SAKPEVMQFLGDRFTDSVRELEGALNTLVARVGGDLARLTLDEAQTILRPHLSCNERK
                     VTVDQIQRVVSEHYGMKQADLISERRARAVARPRQVAMWLAKQITTRSLPDIGRRFGG
                     RDHTTVLHAVRRIEQLKADDPQIARDVDVLLRKLRG"
     gene            4330..4692
                     /locus_tag="VHN39_18010"
     CDS             4330..4692
                     /locus_tag="VHN39_18010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6481 family protein"
                     /protein_id="HEX2818293.1"
                     /translation="MSKRDLKGSGLTDRLSAAAEAKAALLAKMKPKPTVTDPLFAERA
                     AMREAELKAVRDARAVDKAAAVQATADAHAEVQAGVVAAEEAALAEKRGARKERKQLT
                     KAEAQQKRDARYAARKAR"
     gene            complement(4796..6934)
                     /gene="pnp"
                     /locus_tag="VHN39_18015"
     CDS             complement(4796..6934)
                     /gene="pnp"
                     /locus_tag="VHN39_18015"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEX2818294.1"
                     /translation="MFDIKRKTFEWGGKTLTLETGRMARQADGAVLATYGETMVLATA
                     VFAKSAKPGQDFFPLTVNYQEKFYAAGKIPGSFPRREGAPSQKETLTSRLIDRPIRPL
                     FVKGFKNEVQVVCSVLAHDLENDPDIVALVAASAALVISGAPFMGPIAGARVGFVNGE
                     YVLNPTLDEMKDSRMDLVVAGTQDAVMMVESEIQEMTEDEVLKGVMFAHAGMQPVIDA
                     IIELADHSAKEPFDFQADDTDAIKAEMKKAIGKDLAAAFKIPAKLERQDAVGAAKAKA
                     TDKFGKSDTNPAGIGPDKLGAVFKELEADVVRRNILDTGIRIDGRKVDQVRQIVSEVG
                     VLSRAHGSALFTRGETQALVVATLGTGDDEQLIDALEGKYYEKFMLHYNFPPFSVGET
                     GRMGAPGRREVGHGKLAWRAIRPMLPSVEEFPYTIRLVSEIFESNGSSSMASVCGSSL
                     ALMDAGVPLKKPVSGIAMGLILEKDGFAVLSDILGDEDHLGDMDFKVAGTADGITSLQ
                     MDIKIAGITEEIMKQALAQAKGGREHILGEMAKAMEAPRHELGEYAPKIETIKIPVDK
                     IREVIGSGGKVIREITAETGAKIDIGEDGTIKIAAAEQSKIEAAKEWIKSIASEPEVG
                     QIYTGKVVKIVDFGAFVNFFGAKDGLVHVSQIANERVNKVSDVLVEGQSVKVKLLGFD
                     DRGKTRLSMKIVDQETGEDLTSKQPEEADA"
     gene            complement(7189..7458)
                     /gene="rpsO"
                     /locus_tag="VHN39_18020"
     CDS             complement(7189..7458)
                     /gene="rpsO"
                     /locus_tag="VHN39_18020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEX2818295.1"
                     /translation="MSITAERKAEVIKSHARGDADTGSAEVQVAIMSERISNLTEHFK
                     THKKDNHSRRGLLKLVSARRSLLDHLKTSDADRYQKLIETLGLRR"
     gene            complement(7462..8406)
                     /gene="truB"
                     /locus_tag="VHN39_18025"
     CDS             complement(7462..8406)
                     /gene="truB"
                     /locus_tag="VHN39_18025"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010917926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004730 - pseudouridylate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEX2818296.1"
                     /translation="MARRRKGDAVSGWICLDKPYDLTSTHAVSRVRRCFNAQKAGHAG
                     TLDPLATGILPIALGEATKTVPYLVEADKAYRFTIAWGLTTDTYDREGEVTDESDVRP
                     TVAQVEAVLPRFVGEISQVPPAYSAIKVDGERAYDLARAGETVELAARLVTVHSARVA
                     EAPDADHITLEIECGKGTYIRAIARDLAEMLGACGHVSALRRTRVGCFTEQSAVTLEF
                     LEDLGHKARQSELLLPVETALDDIPELAVTAEDAFRLKQGRAIVLVPRQVESVKARLK
                     PGSRTVSAMAGGSVVALCEMRAGRLEPSRVFNLEKSGD"
     gene            complement(8406..8864)
                     /gene="rbfA"
                     /locus_tag="VHN39_18030"
     CDS             complement(8406..8864)
                     /gene="rbfA"
                     /locus_tag="VHN39_18030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013477718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEX2818297.1"
                     /translation="MKRPVTPARQAPRGPSQRQLRAGELMRHALVEILRAQEITDPDI
                     FGVSITLTEVRMSPDLRHATVFVEPLGGGEQAAVVVKALNRHHKFLRGRLGHAIDMKF
                     TPALKFLHDDTFDEAARMNRLFADPRVAQDLTPSEPSDSWKDADSLGEGD"
BASE COUNT         1397 a         2960 c         3008 g         1502 t
ORIGIN      
        1 gtatctcgcc gttcaagccg gcgggcggca tatcgaaggc ccgcctggag acgctcgtga
       61 ccgagattcg cgccgtcctg accgaagcca tcgcggccgg cggctcgacc ttgcgcgact
      121 tcgcccagac ggacggcgcg ctcggctatt tccagcaccg cttccggact tacgaccgcg
      181 agggcgagcc gtgcgccaac gacccgaacg tcggcgtcat cgcccgcaag gtccaggccg
      241 ggcgctcgac cttctattgc cccgcctgcc agacatgacc ctgcgcctta agtccctcgc
      301 cgtcgcgctc accgccttgg ctctcgccat cgcctttggg ggcgcctggg ccggcgcggc
      361 tttcgccgag gtccccgtct gggtggtgaa ggacaaggat tccgaggtcg tgctgtttgg
      421 ctccatccac gtcctgcccc cgggcctcga ctgggcgccg ccggtgctcg accgcgcgct
      481 caggaccgcc gacgacatct ggttcgaact gcccatcgac cccaagagcg aggcggagac
      541 cgctgcgctc gccacccagt tgggggtgct gccgccggac gggtcgctgt tcaagctgct
      601 cggcccccag gacggcgccc tgatgagcaa ggtcgcccag gcgctcgatg tttcgcccgc
      661 gctgctggac cgcctgcagc cctggcttgc cgagatcgcg ctggccggcg gcgcctaccg
      721 caaggtgggc gccgacgcca actccggcgt cgagaacacc atcgccgcca tggccacccc
      781 caaggccaag cgcaaagcct tcgagacccc cgccgagcag atcgcgctcc tgtccggcgg
      841 ggcgatggat gagcagatcg cctctctgcg cgagaccatg cacgagctgg acgagcagcc
      901 cgacgagttc acggccctgg tgcgcgcctg ggtggacggc gacgtccagg ctctggatcg
      961 cgaagcgctg gcgccgatcc gcaacagctc accggccctc ttcaagcgcc tggtgttgga
     1021 ccggaacgcc cggtggacgc aggtgctgga cgcccggctg aagggccacg ggcgcaccgt
     1081 cgtggtggtc ggcatcggcc atctgatcgg ccccgacggc gtgcccgccc gtctgcgagc
     1141 gcttggctat tcggtcacgg ggccttaagg cggcggttgg atgtccgcct attccaagac
     1201 gtcacgggag ccccgcgaat gaccctgcag accctgatcg tggaacgcca cgacgccgtg
     1261 accctgatcc ggctcaaccg ccccgaggcg ctgaacgcgc tgaacggcca gctgatggac
     1321 gagctgaccg cgaccctgga cgagaccgag gccgacgcga gcgtccgctg cgtggtgatc
     1381 accggctcgg accgcgcctt cgccgccggc gccgacatca aggagatggc gtccaagagc
     1441 tacgccgagg tcttcaccga ggacttcatc accaggaact gggagcgggt gacccgctgc
     1501 cgcaagccgg tgatcgccgc ggtggccggc tatgcgctcg gcggcggctg cgagctcgcc
     1561 atgatgtgcg acttcatcat cgccgccgac aacgcccggt tcggccagcc ggagatcaac
     1621 ctcggcgtca tccccggcgc cggcggcacc cagcgcctta cccgcttcgt cggcaagtcc
     1681 aaggccatgg acatggtcct gaccgcccgg atgatgaacg ccgaggaggc caatcaatgc
     1741 ggcctggtca gccgggtcgt gccgctggcc gacctcattt cgaccgccat ggaagcggcg
     1801 cagaagatcg ccgcgctctc gcccaactcg gtgatgatcg ccaaggaact ggtgaatgcc
     1861 gcctacgaga ccccactcag ccagggcgtg aagatggagc gcaggctgtt ccactcgctc
     1921 ttcgccttcg acgatcagaa ggaaggcatg gcggcctttg tcgagaagcg cccggcgaag
     1981 ttcacgggga agtaggggac gctcgttcgg cgggtccgaa aagggcccgc cgtccattga
     2041 cccgccgccg gtcctcccgt atatccgcgc ctccgatttt caccgcccgg gcgaccgggc
     2101 gcgttcgtat gagaagctct taaactatgg ccaatacgcc cggctccaag aaagcggtcc
     2161 gcaagatcgc ccgccgcacc gaagtcaaca ccgcccgccg ttcgcgcgtg cgcaccttcc
     2221 tgcgcaagtt tgacgaggcc ctgaccggcg gcgacgccgc ggccgccaag gacgccttcg
     2281 tgaaggcgca gtccgaattg atgcgcgccg tctccaaggg cgtggtccac aagaacaccg
     2341 gctcgcgcaa ggtttcgcgc ctggccgcgc agctgcggaa gatggccacc gcctgatcga
     2401 tcggcgcggc gggtcatacc ccgcctctcc catgggaatt gaacggccac acggcgccct
     2461 ccgcggcgcc gttttcgtgt ctggggcgag cggccgcggg tgcgacacct gcgtcaaatc
     2521 tgctcagcgc acggagtgct gatcggcgat ttccttggcc ccaaaagggg taagcgcgag
     2581 tcaacgaaaa tatccgcttg agtgcggaag aatcaccgtt gacccacctc ggccccccat
     2641 tagtgttgcc gttcctacag gcgtcttaca tctgatcccg gagcgaaacg gggcgccggc
     2701 ggagtgcatg cgctcgccgg ataagagcct gtttgtgttg attaaaggcg cggtcccctg
     2761 cgtggggctg ggaccgtgac gtgggctggg acggggttga cgaggatgat gagtaggggg
     2821 gctgcgggag ccatggcgag cgcaccggcc ggagtcgtgt ggacgaagac ctgtctggtc
     2881 ttgaagcgcg agctgggcga ggcgacgttt ggctcttggc tgggccaggc ggcgctgcgc
     2941 gaaactggcg acgaggtgtg cctggtggcg gccacgggcg tggcgcgtga ttggatcgcg
     3001 cgtcacgcct ggcgtcgtat cggggagctg tgggcgcaaa acgacccgct cggccgccgt
     3061 ctcgacctga aatcgcgcat ggagtttgac tccgatggtc tggtggccgc ctcggcggcg
     3121 ctgacgccgg cggcttccgc cttggccggc atgggcgccg cggcgaccgc gcctgacgtc
     3181 ttcgaagttg aggccgatcc cgcgcccgcc gcggaccgcc agggccggct cctgggcctg
     3241 caggagcggt tctccttcga caccttcgtc gcgggcccct ccaacgagtt cgccttcgcc
     3301 gtggcccgcc gcgtggcgac gtggtccgac ggccacttca acccggtgat gttccacggc
     3361 ccctatggct tcgggaaaac gcacctgttg aacgcgctcg cctgggaggc catgcgcaat
     3421 gagcccacca agcgggtggt ctatctgacc gccgagaaat tcacttcgac cttcgtcaag
     3481 gcgctgcagg acaagcagac cgcggccttc aaggacgagc tgcgcaacgc cgacctgctc
     3541 ttgatcgacg acgtgcactt cgtggccggc aagccttcga cgcaggaaga actgttccat
     3601 accctgatcg cgctcgtcga agacggccgc cgcgtggtga tgaccgccga ccgctcgccc
     3661 accgagctct cggagatgga gccgcgcctg cgctcgcacc tgcagtcggg cctggtctgc
     3721 ggcatcgagc ccgccgaccg cacccttcgc ctgggcatcc tggagcgcaa actgcagaca
     3781 ctcgcccagc agggcaagtt cctgccgtcc gccaagcccg aggtcatgca gttcctgggc
     3841 gaccgcttca ccgacagcgt ccgcgagctg gagggcgcgc tgaacacgct tgtcgcccgg
     3901 gtcggcggcg atctcgcccg cctgaccctc gacgaggccc agaccatcct tcgcccgcac
     3961 ctgtcgtgca acgagcgcaa ggtgacggtg gaccagatcc agagggtggt ctccgagcac
     4021 tacggcatga agcaggccga cctgatctcc gagcggcgcg cacgcgcggt ggcccggccc
     4081 cgccaggtcg ccatgtggct cgccaagcag atcaccacgc ggtccctgcc cgatatcggc
     4141 cgccggttcg gagggcgcga ccacaccacg gtcctgcacg ccgtgcgccg catcgaacag
     4201 ctgaaggccg atgatccgca gatcgcgcgg gacgtggacg tgttgctgcg gaagctgcgg
     4261 ggctaaaggc gccaaatgct gtagggtgga cccgtcgcgc aatcgcggcg tccagcctga
     4321 ctgcgatcca tgtccaagag agacctcaag ggctccggcc tgaccgatcg cctgtccgcc
     4381 gcggccgagg ccaaggctgc gctgctggcc aagatgaagc ccaagcccac ggtcaccgac
     4441 ccgctgttcg cggaacgcgc cgccatgcgt gaggccgagc tcaaggccgt gcgcgacgcg
     4501 cgcgcggtgg ataaggctgc ggcggtccag gccacggccg acgcccacgc cgaggtccag
     4561 gccggcgtcg tggccgccga ggaagccgcg ctcgccgaaa agcgcggggc gcgcaaggag
     4621 cgcaagcaac tcaccaaggc cgaggcgcaa cagaagcgcg acgcccgcta cgcggcgcgg
     4681 aaggcgcgtt agcgagcccc ctccctctcg gccccgccgg ggaagaggag acacgaaaaa
     4741 ggcggccgca tcgctgcggc cgccccattc atttcagcgg aagtcgaaac gcggcttagg
     4801 cgtcggcttc ttccggctgc ttggaggtca ggtcttcgcc ggtttcctgg tcgacgatct
     4861 tcatgctgag gcgggtcttg ccgcgatcgt cgaagcccag gagcttcacc ttcacggact
     4921 ggccctcgac cagcacatcg gagaccttgt tcacgcgctc gttggcgatc tggctgacgt
     4981 gcaccaggcc atccttggcg ccgaagaagt tcacgaaggc gccgaagtcg acgatcttga
     5041 cgaccttgcc ggtgtagatc tggccgacct cgggttccga ggcgatcgac ttgatccact
     5101 ccttggccgc ctcgatcttc gactgctcgg cggccgcgat cttgatcgtg ccgtcttcgc
     5161 cgatatcgat cttggcgccg gtttcagcgg tgatctcgcg gatcaccttg ccgcccgagc
     5221 cgatcacttc gcggatcttg tccaccggga tcttgatggt ctcgatcttc ggagcgtatt
     5281 cgcccagctc gtgacgcggc gcttccatgg ccttggccat ctcgccgagg atgtgctcgc
     5341 ggccgccctt agcctgggcg agcgcctgct tcatgatctc ctcggtgatg ccggcgatct
     5401 tgatgtccat ctgcagcgag gtgatgccgt cagcggtgcc ggccaccttg aagtccatgt
     5461 cgccgaggtg gtcttcgtcg cccaggatgt cggagagcac ggcgaagccg tccttttcca
     5521 ggatcaggcc catggcgatg ccggagaccg gcttcttcag gggcacgccc gcgtccatca
     5581 gggcgagcga ggagccgcag accgaggcca tggacgagga gccgttggac tcgaaaatct
     5641 ccgagaccaa gcggatcgtg taggggaact cttcgacgct cggcagcatc gggcggatcg
     5701 cccgccacgc cagcttgccg tggccgactt cacgacggcc cggcgcgccc atgcggcccg
     5761 tttccccgac cgagaagggg gggaaattgt agtgcagcat gaacttctca tagtacttgc
     5821 cctcgagggc atcgatgagc tgttcgtcgt cgccggtgcc gagcgtggcc acgaccaggg
     5881 cttgcgtttc accgcgggtg aacagcgccg agccgtgggc gcggctgaga acgcccactt
     5941 ccgagacgat ctggcgaacc tgatcgacct tgcggccgtc gatgcggatg ccggtgtcga
     6001 ggatgttgcg gcggacgacg tcggcctcaa gttccttgaa caccgcgccc agcttgtcgg
     6061 gaccgatgcc ggcggggttg gtgtccgact tgccgaactt gtcggtggcc ttggccttgg
     6121 ccgcgccgac cgcgtcctgg cgttccagct tggcggggat cttgaaggcg gcggcgaggt
     6181 ccttgccgat ggccttcttc atctccgcct tgatggcgtc ggtgtcgtcg gcctggaagt
     6241 cgaagggctc cttggcggag tggtcggcca gctcgatgat cgcgtcgatg acgggctgca
     6301 tgccggcgtg ggcgaacatc acccctttca gcacttcgtc ttcggtcatt tcctggattt
     6361 cggactcgac catcatgacc gcgtcctggg tgccggcgac caccaggtcc atccggctgt
     6421 ccttcatctc gtccagcgtc gggttgagga cgtactcacc gttgacgaag ccgacgcggg
     6481 cgccggcgat cgggcccatg aagggggcgc cggagatgac cagggcggcg gaggccgcga
     6541 ccagggccac gatgtcggga tcgttctcga ggtcgtgggc cagaaccgag cagacgacct
     6601 gcacttcgtt cttgaagccc ttgacgaaca gcggccggat cgggcgatcg atgaggcggc
     6661 tggtcagggt ttccttttgc gagggcgcac cctcgcggcg ggggaaggag cccgggatct
     6721 tgcccgcggc gtagaacttc tcctggtagt tcacggtcag ggggaagaag tcctgacccg
     6781 gcttcgcgct cttggcgaag acggcggtgg cgagaaccat ggtctcgccg taggtggcca
     6841 ggacggcgcc gtcagcctga cgggccatgc ggccggtttc aagtgtcagc gtcttgccgc
     6901 cccactcaaa ggtcttgcgt ttgatatcaa acattttcgc ttctttctcg tcccgcgggc
     6961 gtattcccgg cgggtgcgga cagggatcgg gcttccgaaa tcctctccaa tggaacaggc
     7021 gatgaggact tctttggagc cctcggcgtg tgatgcggcg gcctcgaact gagggatcgc
     7081 ctgtgccgca ttggagtccc ccggcctgtt acggaggagc ggcgaataga ggttcgtccg
     7141 ggccagggcg ccagccatag gctgaccccg aggccctttc gaacagacct agcggcgcag
     7201 gccgagggtc tcgatcagct tctgatagcg gtccgcgtcg gacgtcttca ggtgatccag
     7261 gagcgaccgg cgcgcggaca cgagcttgag cagcccgcgg cgcgagtggt tgtccttctt
     7321 atgggtcttg aagtgttcgg tgaggttcga aatccgttcg gacatgatcg ccacctggac
     7381 ttcggcgctg cccgtatccg cgtcgccgcg ggcatgggac ttgatcacct cagccttgcg
     7441 ttcggccgta atcgacatcg gtcaatctcc gctcttttcc agattgaaga cccgcgaggg
     7501 ttcgagccga cccgcgcgca tctcgcagag ggcgacgacc gatccgcccg ccatggctga
     7561 aacggtgcga gagccgggct tgagcctggc tttgaccgat tccacctgtc ggggaacgag
     7621 aacgatcgcg cgtccctgct tcagtcgaaa agcgtcttcg gcggtcacgg ccagctccgg
     7681 gatgtcgtcc agggcggtct cgaccggaag caatagctcc gactggcggg ccttatgccc
     7741 taaatcctca aggaattcca gcgtcaccgc agattgttcg gtgaagcacc ccacgcgggt
     7801 cctgcgcagc gcgctgacgt ggccgcaggc ccccagcatt tccgccaggt cgcgggcgat
     7861 ggcgcggatg taggtgccct tgccgcattc gatttccagc gtgatgtgat cggcgtctgg
     7921 cgcctccgcc acccgggcgg aatggacggt gacgaggcgg gcggccaatt ccaccgtttc
     7981 gccggcgcgg gccagatcgt aggcgcgttc gccatcgacc ttgatcgccg aataggcggg
     8041 cgggacctgg ctgatctcgc cgacgaaacg cggcaggacg gcctcgacct gcgccaccgt
     8101 cggacggacg tcggattcat cggtcacctc gccctcgcgg tcgtaggtgt ccgtggtgag
     8161 gccccaggcg atagtgaagc ggtaggcttt gtcggcctcc acgaggtagg ggaccgtctt
     8221 ggtggcttcc cccagcgcga tcggcaggat gccggtggcc aaagggtcga gcgtcccggc
     8281 gtggcccgcc ttctgggcgt tgaagcagcg gcggacgcgg gagaccgcgt gggtcgaggt
     8341 cagatcgtag ggtttgtcga ggcagatcca gcctgagacc gcgtcgccct tgcggcggcg
     8401 cgccactagt ccccctctcc caaagaatcg gcgtccttcc agctatcgga aggctcgctg
     8461 ggcgtcaggt cctgggccac gcgcgggtcg gcgaacaggc ggttcatccg cgcggcctcg
     8521 tcgaaggtgt cgtcgtgcag gaacttgagc gcaggcgtga acttcatgtc gatggcgtgg
     8581 cccaggcgcc cgcgcaggaa cttgtggtgg cggttcagcg ccttgaccac gaccgccgcc
     8641 tgctcgccgc cgcccagggg ctcgacgaag acggtggcgt ggcgcaggtc cgggctcatc
     8701 cgcacttcag tgagcgtgat cgagacgccg aagatgtccg ggtcggtgat ctcctgggcg
     8761 cgcaggatct cgacgagcgc gtggcgcatc agctcgccgg cgcgcagctg gcgctgcgac
     8821 gggccgcgcg gggcctgtcg ggcaggggtg acgggacgtt tcatggc
//
LOCUS       DATAJL010000955         3954 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_76744,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000955 DATAJL010000000
VERSION     DATAJL010000955.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3954
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76744"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..527)
                     /locus_tag="VHN39_18035"
     CDS             complement(<1..527)
                     /locus_tag="VHN39_18035"
                     /inference="COORDINATES: protein motif:HMM:NF012257.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide-binding domain-containing
                     protein"
                     /protein_id="HEX2818298.1"
                     /translation="MVELAPKFQNSTIGPVSRFGGKANPAAAAPLLRRLGRFAPLTAD
                     EIDEVRELVSLRKRSRPGTTLFAEGRPAAAQFLLSGWACSQRVLRDGRRQIFDFILPG
                     EGFGHGSAVEGQARQTFVALTSVETVDADAFIAAARNGSPDGLWRAIRATEREEDARR
                     LEHMVRLGRLTAHEKV"
     gene            892..1593
                     /locus_tag="VHN39_18040"
     CDS             892..1593
                     /locus_tag="VHN39_18040"
                     /inference="COORDINATES: protein motif:HMM:NF024934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0030552 - cAMP binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEX2818299.1"
                     /translation="MKLLNFFLSSLTSDDLAALSPGMTEVVLGVSEVLFDPGHQPDAI
                     YFPGGACVSIVTILADGRTVENTTVGRESAAGLIEAITERPATARAFAQIGGGAMRVP
                     AALFRTRMLQSPSLAHLTMLHVRANAVQAEQGVACNAAHDVPARLSRWLLMTQDRVGS
                     KTFPLTQDYMAVMTGVQRSTVSLAASALKKRGVIDYSRGLVTIQDRPGLQRQACECYD
                     IIGAQFEELRSSIDD"
     gene            complement(1590..2321)
                     /locus_tag="VHN39_18045"
     CDS             complement(1590..2321)
                     /locus_tag="VHN39_18045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0043461 - proton-transporting ATP synthase
                     complex assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP12 family protein"
                     /protein_id="HEX2818300.1"
                     /translation="MARGFHEPGDKPKRFYATVSVAQMNGGFTVTLDGRTLRGPKGAQ
                     VILPTEALADQVAGEWRAQGDTLHLAAMHATRLANTAIESVPHAREATAQAIADFAAS
                     DLLCYFATAPAGLLERQQRLWGPVLDRAEADEGLRLIRTAGIVHQVQPPATLARVKAI
                     ALELDDFGLTGLAFGAALFGSAVLAIALQRGWLAGEDAFDLSRLDEAWQEEKWGIDAE
                     AAERTARLRGEAAMLGRWFEGLGVP"
     gene            2376..3914
                     /locus_tag="VHN39_18050"
     CDS             2376..3914
                     /locus_tag="VHN39_18050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1800 family protein"
                     /protein_id="HEX2818301.1"
                     /translation="MKAWRDKRKEIDDVALPDQDMRAAIAVTRFGLGAKPGEIAQARQ
                     DPQGFLRSQIRRSGADQPLGQPVATQQRMAEFREYRRDRKEARVEKASDVRPPAASVD
                     GANPAMADAARPRAEARDPVKVVGNMLRQDISADFTARTQLGATTDAGFRERWALFWA
                     NHFTVSATKAITGTIVGPFEEEAIRPHVFGRFEDLLGAAESHPAMLTYLDQIQSIGPD
                     SQAAQFSRRGGPRGVGAGFQPAVQRTVGLNENLAREIMELHTVGVNGGYTQADVTEFA
                     RAMTGLSIGGERDGGAYGVAVFHPQAHQPGERTVMGVRYDQRGKEQTSAILIDLAAKP
                     QTARFICTKIARHFVADDPPPALVARLEAAWTSSKGDLSQVAEALIAAPEAWTPAPQK
                     FKTPYEFIVSSYRAAGGQPSGFQQFGPILTALGQKPFSAASPKGWPEDAQSWAAPDGI
                     VKRMQFAQAFSAGAVRDRDPKVLAADALGERLTPDTAKAIARAESRAEGFALLLMSPE
                     FQRR"
BASE COUNT          645 a         1429 c         1293 g          587 t
ORIGIN      
        1 accttctcat gcgccgtcag ccgccccagg cgcaccatat gctccagccg tcgggcgtct
       61 tcctcccgct cggtggcgcg gatcgcccgc cacagcccgt ccggcgagcc gttgcgcgcc
      121 gcggcgatga aggcgtcggc gtcgacggtc tccaccgagg tcagggcgac aaaggtctgg
      181 cgggcctggc cctccaccgc cgagccatgg ccgaagcctt caccgggcag gatgaagtcg
      241 aagatctgcc ggcgtccatc gcgcagcacc cgctggctgc acgcccagcc ggagagcagg
      301 aactgagccg ccgcggggcg cccctccgcg aacagggtgg tccccggccg cgagcgcttt
      361 cgcaggctca ccagctcgcg aacctcatcg atctcgtcag ccgtcagcgg cgcgaaccgg
      421 cccagcctgc gcagtagcgg cgcggcggcg gccgggtttg ccttgccgcc gaatcgcgag
      481 acgggcccga tagtcgaatt ttggaacttc ggagcgagct caaccacgct ctggtcgggt
      541 ccagcggcgc gtgaaggccc agtgcgacaa ctcaaccatg cgccactccc tagcttcgca
      601 agagactcgc attccttcgg cgcgtctgtc cgctacccga aatagccggc ctgttgcggc
      661 aaacgcgcgc gccgcgggcc cggcagatcg gcattcgccg tgccgccggc ggcactatgt
      721 cgaatgtcaa acacactatg ttgtaaattg tcgcagggcg tgaggtttct aaaatatagt
      781 tgcgaagctc taccggtgat ttaggaattc acgattacgc ttccaattca ctgccaatac
      841 ccgcaagacg aggtagttcg gggttttgtc ctgggcagct ttggagcccg agtgaaactt
      901 ctgaacttct ttctatcgtc cctcacgtcc gacgatctgg cggctttgtc gcccggcatg
      961 accgaggtgg ttctgggtgt cagcgaggtt ctatttgatc cgggccacca gccggacgcg
     1021 atctatttcc ccggcggcgc ctgtgtttcc atcgtcacca tcctggccga cggccggacc
     1081 gtcgagaaca ccaccgtggg ccgggaaagc gccgcaggcc tgatcgaggc gatcaccgaa
     1141 cggccggcca cggccagggc cttcgcccag atcggcggcg gcgccatgcg cgttccggcc
     1201 gcgctgttcc gcacccggat gctgcagagc ccgtcgctcg cccatctcac catgctgcat
     1261 gtgcgcgcca acgccgttca ggccgaacag ggggtggcct gcaacgccgc ccacgacgta
     1321 ccggcccggc tctcgcgctg gctcctgatg actcaggacc gggtgggctc gaagaccttc
     1381 ccgctcaccc aggactacat ggccgtgatg accggggtgc agcgctcgac ggtcagcctg
     1441 gcggccagcg cgctcaagaa gcgcggcgtg atcgactatt cccgcggcct ggtcaccatc
     1501 caggaccgcc ccggcctgca gcggcaggcc tgcgaatgct acgacatcat cggcgcgcag
     1561 ttcgaagagc tgcgctcgtc gatcgacgac taggggacgc caagcccttc gaaccatcgc
     1621 cccagcatcg ccgcctcgcc gcgcaggcgg gccgtgcgtt cggccgcctc ggcgtcgatg
     1681 ccccactttt cctcctgcca ggcctcgtcg aggcgggaga ggtcgaaggc gtcctcaccg
     1741 gccagccagc cccgctgcag ggcgatcgcc agcaccgccg aaccgaacag cgccgccccg
     1801 aacgccagtc cggtcaggcc gaaatcgtcc agctccagcg cgatggcttt cacccgagcc
     1861 agggtcgcgg gcggctggac ctggtgaacg atcccggctg tgcggatgag cctcaggccc
     1921 tcgtcggcct ccgcgcgatc gaggacaggg ccccagagcc gctgctgacg ctccaggagg
     1981 ccggccgggg cggtggcgaa gtaacagagg aggtcggagg cggcgaagtc ggcgatggcc
     2041 tgggcggtgg cctcgcgggc gtgaggcacg gactcgatgg cggtattggc caggcgcgtg
     2101 gcgtgcatcg ccgccagatg caaggtgtcc ccctgcgcac gccattcccc ggcgacctga
     2161 tcggcgagcg cctcggtcgg caggatcacc tgcgcgccct tggggccacg cagcgtgcgg
     2221 ccgtcgaggg ttacggtaaa accgccgttc atctgcgcga cagatacggt ggcgtagaac
     2281 cgttttggct tgtccccggg ttcgtgaaat cctcgagcca agtgttgagt aactcccgta
     2341 acgtcccggc ccgcattgcg ccgcttttgg gtgacatgaa ggcctggagg gacaagcgca
     2401 aggagatcga cgacgtggcg cttcctgacc aggatatgag ggccgcgatc gcggtcaccc
     2461 gctttggcct gggcgccaag cctggggaaa tcgcccaggc gcgtcaggac ccgcaagggt
     2521 tcctcaggag ccagattcgc cgctccggcg ccgaccagcc cctgggccag cccgtggcca
     2581 cccagcagcg catggccgag ttccgcgaat accggcgcga ccgcaaggag gctcgcgtcg
     2641 agaaggcctc cgacgtccgc ccgcccgcgg caagcgtcga tggcgccaat cccgccatgg
     2701 ccgacgcggc gcgccccagg gccgaggccc gcgacccggt gaaggtcgtc ggcaatatgc
     2761 tccgccagga catcagcgcc gacttcaccg cgcgcaccca gctcggcgcc accaccgacg
     2821 ccggcttccg cgaacgctgg gcgctgttct gggccaacca cttcacggtc tcggcgacca
     2881 aggcgatcac cggaaccatc gtcggcccct tcgaggagga ggccatccgg ccccacgtct
     2941 tcggccgctt cgaggacctg ctgggcgcgg ccgagagcca cccggccatg ctgacctacc
     3001 tcgaccagat ccagtcgatc ggcccggaca gccaggcggc tcagttctcg cggcgcggcg
     3061 gaccgcgcgg tgtcggcgcc gggttccagc ccgccgtcca gcgcaccgtg gggctcaacg
     3121 agaacctcgc gcgcgagatc atggagctgc acaccgtcgg cgtgaacggc ggctacacgc
     3181 aggccgacgt caccgagttc gcccgcgcca tgaccggcct ctcgatcggc ggcgagcgcg
     3241 acggcggagc ctatggcgtg gccgtgttcc atccccaggc ccaccagcca ggagagcgca
     3301 cggtgatggg cgtgcgctac gatcagcgcg gcaaggagca gaccagcgcc atcctgatcg
     3361 acctggccgc caagccgcag accgcccggt tcatctgcac caagatcgcc cggcacttcg
     3421 tggccgacga cccgccgccg gcgctggtgg cgcgcctgga agccgcatgg acatcgtcca
     3481 agggcgacct cagccaggtc gccgaggcgc tgatcgccgc gccggaggcc tggaccccgg
     3541 cgccacagaa attcaagacg ccctacgagt tcattgtctc gagctatcgc gcggccggcg
     3601 gccagccgtc agggttccag cagttcggac cgatcctgac cgcgctcggc cagaagccat
     3661 tctcagcggc ctcgccgaag ggctggccgg aagacgcgca gtcctgggcc gcgcctgacg
     3721 gcatcgtcaa acgcatgcag ttcgcccagg cgttctcggc cggcgccgtc cgcgaccgcg
     3781 atcccaaggt actcgccgcc gatgcgctgg gcgagcgcct caccccagac accgccaagg
     3841 ccatagcgcg cgccgagtcg cgcgccgagg gcttcgccct cctcctgatg agcccggagt
     3901 tccaacgccg atgaacgcca tgaacccctc acgcccattt tcgccgtcaa gaag
//
LOCUS       DATAJL010000956         2580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_111500,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000956 DATAJL010000000
VERSION     DATAJL010000956.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111500"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VHN39_18055"
     CDS             <1..230
                     /locus_tag="VHN39_18055"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818302.1"
                     /translation="GFDEAEKTRLFEAFTQSDDSLTRRYGGAGVGLALAHRLATELGG
                     QLDCHSTPGEGSTFTFEVDLPAAVVDQTLAA"
     gene            complement(232..1689)
                     /locus_tag="VHN39_18060"
     CDS             complement(232..1689)
                     /locus_tag="VHN39_18060"
                     /EC_number="1.2.1.68"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010919715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050269 - coniferyl-aldehyde dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006081 - cellular aldehyde metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coniferyl aldehyde dehydrogenase"
                     /protein_id="HEX2818303.1"
                     /translation="MGVEAKIEAAGEVRRMADVLRRQKAANIRDGAPSLEVRIGRLDR
                     AIGLLIKHESAIVGALSQDFGARAPAVSGITDIGASLGPLKHAKAHLKTWMKPERRKT
                     TPALLGMLGAKAEVRFQPKGVVGIISPWNFPVNLTFAPLAGVLAAGNRAMIKPSEFTP
                     ATSDLMAKMFAEAFDEDEIAVFPGGPDVGQAFSDLAFDHLVFTGATSIARHVMKAAAA
                     NLVPVTLELGGKSPVILGRSADFATSAARIMAGKTMNAGQICLAPDYVMAPADQLATF
                     VKEATAAVTAMFPTIKDNPDYTAVIAERHFERIKGYVDDARAKGAEIIEINPAGEDFN
                     QQEHRKIPPTLILNPTEEMKVMQEEIFGPVLPVMTYKTVDEAIAYVNAHDRPLGLYYF
                     GEDTAEEAKVLAHTTSGGVTVNDVIFHVAMEDLPFGGVGPSGMGSYHGVDGFREFSHR
                     KSVYRQLKKDLGPMKALRPPYGEGVKKFLAGQLKP"
     gene            complement(1759..>2580)
                     /gene="nadC"
                     /locus_tag="VHN39_18065"
     CDS             complement(1759..>2580)
                     /gene="nadC"
                     /locus_tag="VHN39_18065"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEX2818304.1"
                     /translation="LIAPIVQAALAEDLGRAGDVTSQACVPRDARLRAVFVARKPGVI
                     AGMACARLAVAALDPSADFKGVVEDGARVGAGEKLAWVDANARALLGAERVGLNLMGH
                     LSGVATLTRAYVRAVEGTGAIIVDTRKTTPGLRALEKYAVRCGGGVNHRFGLDDAILI
                     KDNHIAACGSVGEAVRRARAAAGHLMKVEVEIDGLGQLEEALKYGPDVVMLDNFSLED
                     LAEAVRRATGRAVLEASGGVTLETARAIAETGVDVISVGALTHSANVLDIGLDAA"
BASE COUNT          382 a          888 c          882 g          428 t
ORIGIN      
        1 tcggcttcga cgaggccgag aagacgcggc tcttcgaggc attcacccag tcggacgaca
       61 gtctcacgcg gcgttacggc ggcgcgggcg ttgggctcgc cctggcgcat cggctcgcga
      121 cggagctggg cggtcagctc gactgccatt ccactccggg cgaagggtcg accttcacct
      181 tcgaggtcga tctgccggcg gctgtcgtcg accagacctt agcggcctag atcaaggctt
      241 gagctgcccg gccaggaact tcttcacgcc ctcgccatag ggcgggcgca aggccttcat
      301 cggccccagg tccttcttga gctggcgata gacggacttg cggtggctga actcgcggaa
      361 gccatcgacg ccgtgatagc tgcccatgcc ggaggggccg acgccgccga acggcaggtc
      421 ctccatggcc acgtggaaga tcacgtcatt gaccgtcacc ccgcccgagg tggtgtgagc
      481 caggaccttg gcctcctcgg ctgtgtcctc gccgaaatag tagaggccca gcggccggtc
      541 gtgggcgttc acataggcaa tggcctcgtc gacggtcttg taggtcatga ccggaaggac
      601 gggcccaaag atctcctcct gcatgacctt catctcctcg gtgggattga gaatcagggt
      661 gggcggaatc ttgcggtgct cctgctggtt gaaatcctct ccggccggat tgatctcgat
      721 gatctcggcg cccttggcac gcgcatcgtc cacatagccc ttgatccgct cgaagtgccg
      781 ctcggcgatc acggcggtgt agtcaggatt gtccttgatg gtcgggaaca tggcggtgac
      841 ggcggcggtc gcttccttca cgaaggtggc gagctggtcc gcgggcgcca tgacgtagtc
      901 gggggccagg cagatctggc cggcgttcat ggtcttgccg gccatgatgc gggcggccga
      961 ggtggcgaag tccgcggatc tgccgaggat caccgggctc ttgccgccga gctccagggt
     1021 gacgggcacc aggttcgcgg cggccgcctt catcacgtgg cgggcgatgg aggtcgcgcc
     1081 ggtgaacacc aggtggtcga aggccagatc cgagaacgcc tggcccacgt cgggcccgcc
     1141 ggggaagacc gcgatctcgt cttcgtcgaa ggcctcggcg aacatcttcg ccatcaggtc
     1201 ggaggtggcg ggcgtgaact cggacggctt gatcatcgcc cggttgccgg ccgccagcac
     1261 gccggccagc ggcgcgaagg tcaggttcac cggaaagttc caggggctga tgatgcccac
     1321 cacgcccttg ggctgaaagc gcacctcggc cttggccccc agcatgccca ggagcgccgg
     1381 cgtggtcttg cgcctctcgg gcttcatcca ggtcttcaga tgcgccttgg cgtgcttcag
     1441 ggggcccagc gaagcgccga tgtcggtgat gccgctgacc gccggcgcac gggcgccgaa
     1501 gtcctgggag agcgccccca cgatggcgct ttcgtgcttg atcagcaggc cgatggcgcg
     1561 gtcgagccgg ccgatccgga cctccaggct gggcgctccg tcacggatat tggcggcctt
     1621 ctggcggcgc agcacgtcgg ccatgcgccg cacttcgccc gcggcttcga tcttcgcttc
     1681 aacgcccatg ccggtcgttc cctctggttg ccggcacggt ggaccgcagg aacgcgcacg
     1741 acaaggcgcg cccctacgtc aagctgcgtc caggccgatg tcgaggacgt tggctgagtg
     1801 ggtcagcgcg ccgacgctga tcacgtccac tcccgtctcg gcgatggcgc gcgcggtctc
     1861 cagagtgacg ccgccggagg cctccagcac ggcccggccc gtggcgcggc gcacggcctc
     1921 ggcgaggtct tccaggctga agttgtcgag catcaccacg tcgggaccat acttcagggc
     1981 ctcctccagt tggcccagtc cgtcgatttc cacctccacc ttcatcaggt gccccgcggc
     2041 ggccctggcg cggcgcacgg cctcgccgac cgagccgcag gcggcaatgt ggttgtcctt
     2101 gatcaggatc gcgtcatcca ggccaaagcg gtggtttacc ccgccgccgc agcgcaccgc
     2161 atacttctcc agcgccctga ggccaggcgt ggtcttacgg gtgtcgacga tgatcgcgcc
     2221 cgtgccctcc accgcccgca cgtaggcccg cgtcagggtg gccacccccg acaggtgacc
     2281 catcaggttc aggcccaccc gctcggcgcc caacagagcc cgggcgttgg cgtccaccca
     2341 ggcgagcttc tcgccggcgc cgacccgggc gccatcctcg accacgccct tgaagtcggc
     2401 ggacggatca agcgcggcga ccgccaggcg ggcgcacgcc atcccggcga tcacgccagg
     2461 cttgcgggcg acaaagacgg cgcgcagccg ggcgtctctc ggcacgcagg cctgggaggt
     2521 gacgtcgccg gcccgcccca ggtcctccgc gagcgcggcc tggacgatgg gggcgatcag
//
LOCUS       DATAJL010000957         2193 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_125003,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000957 DATAJL010000000
VERSION     DATAJL010000957.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125003"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..685
                     /locus_tag="VHN39_18070"
     CDS             <1..685
                     /locus_tag="VHN39_18070"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HEX2818305.1"
                     /translation="NQVLAKDNFMSGTINGPLGQRGPDYDFGSSPELVTLPGGKSLLI
                     TGNKSAIIYAMDPDTGKTVWQSAKLGSGGAGGGVEWGSATDGKILYAPLADNPARGRP
                     GIAALSVDDGKVLWQMDAPKDLPCNVPSGRCLPGYSQAATAIPGAIFTGGLDGRLRAY
                     AAADGKLIWSYDTTTPVDTVNGLQAALGGSLDMGGPAVAGGMVFIHSGYGGSAGANNL
                     LLAFSPDGR"
     gene            774..1283
                     /locus_tag="VHN39_18075"
     CDS             774..1283
                     /locus_tag="VHN39_18075"
                     /inference="COORDINATES: protein motif:HMM:TIGR02937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEX2818306.1"
                     /translation="MLDEERLADLLRAMAGGDRAAAPELYKLIGGRLYGVAQRILRDP
                     GLAEDAVQEGFLKIWKNARRFDAAKGAASTWMAVIVRRAAIDKRPRVTMQILPELEAP
                     TVDLDYVHPRLRACLSDLPELHRKALVLTYVYGLSHTELAQAMGAPLGTVKSWVRRAT
                     VALKEKLER"
     gene            1280..1738
                     /locus_tag="VHN39_18080"
     CDS             1280..1738
                     /locus_tag="VHN39_18080"
                     /inference="COORDINATES: protein motif:HMM:NF024375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2818307.1"
                     /translation="MSRKAATKAVETWVDASPTELALASLDMAMPPVEPPAGLWARIE
                     RSLAANDMISTAGLALEHYEAGAWRNLAPGVRMKKLWGKRTLLIECQPGAVVPAHRHR
                     AFEHSLILSGDVTSDEGDYRAGDYHGMPAGSEHGAWTTRAGCRVLIQYDA"
     gene            1876..>2193
                     /locus_tag="VHN39_18085"
     CDS             1876..>2193
                     /locus_tag="VHN39_18085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818308.1"
                     /translation="MGIDYRMAAMACVACLSAGVRWTGHRGIPVFEIVFFRNAFAFVP
                     LGLYIWRTTGWTVLKTRRPLGHLHRSAVGLLGMVCSFTALQHLALTEATAFTFAAPLF
                     MTAL"
BASE COUNT          337 a          793 c          725 g          338 t
ORIGIN      
        1 gaaccaggtg ctggccaagg acaacttcat gtccgggacg atcaacggac cgctggggca
       61 gcgcgggccc gactacgatt tcggatcgtc gcccgagctg gtgacgcttc ccggcggcaa
      121 gtcgctgctg atcaccggca acaagtccgc gatcatctat gccatggatc ccgacaccgg
      181 aaagaccgtc tggcagtccg ccaagctggg cagcggcggg gccggcggcg gcgtcgaatg
      241 gggctcggcc acggacggca agatcctcta cgcgccgctg gccgacaatc cagcccgcgg
      301 gcggcccggc atcgccgccc tgagcgtcga cgacggcaag gtcctctggc agatggacgc
      361 gcccaaggac ctgccctgca acgtgccctc gggccgctgc ctgcccggct attcccaggc
      421 ggccaccgcc attcccggcg cgatcttcac gggcggcctc gatgggcgcc tgcgcgccta
      481 cgccgccgcc gacggcaagc tcatctggag ctatgacacc accactccgg tcgacaccgt
      541 caacgggctg caggccgcgc tggggggcag cctcgacatg ggcggcccag ccgtcgccgg
      601 cgggatggtc ttcatccact ccggctatgg cggcagcgcg ggcgcgaaca acctgttgct
      661 ggccttctcg ccagacggcc gataacgccg gccgataacg ccggtctctg gcgctagccg
      721 tccccaatcg catccgatta caccccctcg ccgtaaagcc cttgagggaa tggatgctcg
      781 acgaggagcg acttgccgat ctgctccgcg ccatggcggg cggggaccgc gccgcggccc
      841 cggagctcta caagctgatc ggtgggcggc tctacggcgt cgcccagagg attctgcgcg
      901 acccgggcct ggcggaggac gccgtgcagg aaggcttcct gaagatctgg aaaaacgccc
      961 ggcggttcga cgcggccaag ggcgcggcct ccacctggat ggcggtgatt gtccgccgcg
     1021 cggccatcga caagcgtccg cgggtgacga tgcaaatcct gccggaactc gaggccccca
     1081 ctgtcgattt ggactacgtg caccctcgat taagggcgtg cctgtctgat ctgcccgagt
     1141 tgcatcggaa agccctagtc ctgacgtatg tctatggtct gagccacacc gaactcgccc
     1201 aggccatggg tgcgcccctg ggcaccgtga agagttgggt ccgccgcgcc actgtggcgc
     1261 tgaaagagaa gttggagcga tgagccgcaa ggccgcgacc aaggccgtgg agacctgggt
     1321 ggacgcttcc cccacggagc tggcgctcgc cagcctcgac atggccatgc cgcctgtcga
     1381 gccgccggcc ggcctgtggg cgcgtatcga acgcagcctg gccgccaacg acatgatctc
     1441 caccgcgggt ctcgcgcttg agcactatga ggccggcgcc tggcgcaacc tcgcccccgg
     1501 cgttcgcatg aagaagctgt ggggcaagcg caccctgctc atcgaatgcc agcccggcgc
     1561 ggtggtcccc gcccatcgtc accgcgcctt cgaacactcc ctgatcctct ccggcgacgt
     1621 caccagcgac gagggcgact accgggccgg cgactaccac ggcatgccgg cgggctccga
     1681 gcatggggcc tggaccacgc gcgccggctg ccgcgtgctg atccagtacg acgcctaggg
     1741 cctgccgcgc gggcctgcgc ctgtcatcga ttgtagcaag gcatgcgcgg ggcggcggtt
     1801 gaccgcgggc gcccgcgccc gcaaaccggc gccgtgacgc ccgccgcctc ccatcattcg
     1861 caccaccata acggcttggg gatcgactac cggatggcgg ccatggcctg cgtcgcctgc
     1921 ctgtccgcgg gcgtgaggtg gacgggccat cgcggcattc cagtgttcga gattgtcttc
     1981 tttcgcaacg ccttcgcctt cgtgccgctc ggcctctaca tctggcggac cacgggctgg
     2041 acggtgctca agacgcggcg gccgctcggc cacctgcacc gctcggcggt gggcctgctt
     2101 ggcatggtct gcagcttcac cgccctgcag cacctggccc tgaccgaggc caccgccttc
     2161 accttcgccg cgcccttgtt catgaccgcg ctg
//
LOCUS       DATAJL010000958         3330 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_111548,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000958 DATAJL010000000
VERSION     DATAJL010000958.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3330
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111548"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VHN39_18090"
     CDS             complement(<1..474)
                     /locus_tag="VHN39_18090"
                     /inference="COORDINATES: protein motif:HMM:NF013646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0071949 - FAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HEX2818309.1"
                     /translation="MRILIVGAGIGGLTAALSLHAAGFQPVVFEAVAKPAPLGVGINL
                     LPHATRELTALGLLDDLQRLGVDMRALVYLTRHGREIWREPRGSAAGYAWPQIAVHRG
                     RLQMLLLEKVLERLGPDAVRFDHALTDFELQDAGVTAHFVSRDGHARGSETADILI"
     gene            complement(552..1724)
                     /locus_tag="VHN39_18095"
     CDS             complement(552..1724)
                     /locus_tag="VHN39_18095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818310.1"
                     /translation="MAIRTERNLRVGIERRHPKRLVVLCLGTALCALGAMAAIAAPSP
                     KAAASVDPNVQQPNWRPPKNAWGQPDLSGTWTNVTLTPLTRDLHITDKPTLSAAEAHA
                     KEKFFTEALAARDAEADPNSLPGNADDKAKDAKLIAARADFAQSGGDVGGYNTFWLDP
                     GTHMSDINGAFRTSILTTPNGQFPPRKSSQGGGSGPAPGGGFREVYDSYESRPLAERC
                     ISFARNAPPPMLPNGYYNNNYQIVQTGDSVAIQVEHIHDVRIVRLNDHHRTDGLRPWL
                     GDSVGRYEGNALVVETTNVPQANNFMGSWKNLKVTERFTRISPTRVNYQFQVEDPDTW
                     DKPWGGEYNFSPLHGIVYEYACHEGNYALPAILAGARREEQEATQAPQAKGKPGAD"
     gene            complement(1797..2408)
                     /locus_tag="VHN39_18100"
     CDS             complement(1797..2408)
                     /locus_tag="VHN39_18100"
                     /inference="COORDINATES: protein motif:HMM:NF012655.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2818311.1"
                     /translation="MATAALGRREQNKLDKRGRIIAAARDLFTRKGFEATTSQEIADG
                     AGVAGGTVFTYARTKDDLLILVFHDEMLDVVERAYVAARGADALLDQALAFFGTMVAY
                     HERDLRLARALMRQLGYVGVTEQRTLVRELMRSLLGRLALLVDAAKANGAVATDTPLL
                     PSARSLFAIYYFHLGGLLSGYLDRPQFDRALRSDLGLLMRGLD"
     gene            complement(2815..>3330)
                     /locus_tag="VHN39_18105"
     CDS             complement(2815..>3330)
                     /locus_tag="VHN39_18105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818312.1"
                     /translation="AIFAGALAALALSLALLGLAAGFGLKLASPWPGARPSLAEFTPI
                     LGAWMIVVQVLASALGGYLAGRLRTRWLNVHSHEVHFRDTAHGLLVWALSTVAGVVLA
                     ATVLAPPAEHAAALAMMATERDTNVAAQFSLFLGVGLLLGAFIACVAAALGGLRRDEM
                     STKFRPDPARA"
BASE COUNT          531 a         1079 c         1155 g          565 t
ORIGIN      
        1 aatcaggatg tcggcggtct cgctgcctcg cgcgtggccg tcgcggctga cgaagtgggc
       61 ggtcaccccg gcatcttgga gttcgaaatc ggtcagggcg tggtcgaacc tgacggcgtc
      121 gggcccaagg cgctccagaa ccttttcgag caggagcatc tgaaggcgcc cgcgatgcac
      181 agcgatctgc ggccaggcgt aaccggcggc cgacccgcgt ggctcccgcc agatctcgcg
      241 gccatgccgg gtgaggtaga ccagcgcgcg catatccacg cccaaacgtt gcaggtcgtc
      301 gagcagtccg agcgccgtca actcacgggt cgcgtgcggc aggaggttga tgcccacgcc
      361 gagtggggcc ggcttcgcga cggcctcgaa gacgaccggc tggaaccccg cggcgtgcag
      421 gctgagcgcc gcggtcagtc cgccgatccc ggcgccaacg atcaggatcc gcatgatctc
      481 acctcagtcg cgccgccttc agcgcctcca gatccgcgcc gcagaacagg atcggcctgg
      541 tcatgtgaag atcagtccgc cccaggctta cccttggcct gcggcgcctg ggttgcctcc
      601 tgctcttccc tgcgcgcccc ggccaggatc gcgggaagag cgtagttgcc ctcgtggcag
      661 gcgtattcgt agacgatgcc gtgcaggggc gagaagttgt attcgccgcc ccagggcttg
      721 tcccacgtgt ccgggtcttc cacctggaac tggtagttga cccgcgtcgg cgagatacgg
      781 gtgaaccgct ccgtcacctt caggttcttc caggagccca tgaagttgtt cgcttgcggc
      841 acgttcgtgg tctccacaac aagggcgttc ccctcgtagc ggcccacgga gtcgccaagc
      901 cacggccgca ggccatcagt ccggtggtgg tcgttcaggc gcacgatcct gacgtcgtgg
      961 atgtgctcta cctggatcgc caccgagtcc cccgtctgca cgatctgata gttgttgttg
     1021 tagtagccat tgggcagcat cggcggaggt gcgttgcgcg cgaagctgat gcagcgctcg
     1081 gcgagcggac ggctctcgta gctgtcgtag acctcgcgga acccgccgcc gggcgccggg
     1141 ccgctaccgc ccccttggct ggacttgcgc ggcgggaact ggccgttcgg cgtggtcagg
     1201 atggaggtcc tgaacgcgcc attgatgtcc gacatgtggg tgccgggatc tagccagaag
     1261 gtgttgtagc cgccgacgtc tccaccggat tgggcgaagt cggcgcgcgc ggcgatcagc
     1321 ttggcgtcct tggccttgtc gtcggcgttg cccggcaggg agttggggtc cgcttccgcg
     1381 tcacgcgcgg cgagcgcctc ggtgaagaac ttctccttcg catgcgcctc ggccgccgac
     1441 agggtgggct tgtcggtgat gtgcagatcg cgggttagcg gcgtcagggt gacgttggtc
     1501 cacgtccccg aaaggtcagg ctgaccccat gcgttcttcg gcgggcgcca gttgggttgc
     1561 tggacgttgg gatcgaccga ggcggcggct ttgggcgacg gcgcggcgat ggccgccatc
     1621 gcccccaagg cgcacagggc ggttcccagg caaaggacga cgaggcgctt ggggtgtcta
     1681 cgctcgatgc cgacacgcag gtttcgctcg gttcgtatgg ccatgcggca gtcctccggg
     1741 cggctcggag ccgctctgtt tggtcttgat ggtgtggttc gctcaagcgc ggatcgttag
     1801 tccaagcctc gcatcaacag tccgaggtcg gatcgaaggg cgcggtcgaa ctgcggcctg
     1861 tcgagatatc cgctgagcag accgcccagg tggaagtagt agatcgcgaa caggctgcgg
     1921 gcggagggca agagcggtgt gtcggtcgcg acggcgccgt tcgccttggc ggcgtccacg
     1981 agcagcgcca ggcgtcccag caggctcctc atgagttcgc ggacgagggt gcgctgttcg
     2041 gtgacgccga cataaccgag ctgccgcata agcgccctcg ccaggcgcag gtctcgttcg
     2101 tgataggcga ccatcgtccc gaagaaggcg agggcctgat ccaggagcgc gtcggcgccg
     2161 cgcgcggcga cataagcgcg ctcgacgacg tcaagcatct cgtcatgaaa caccagaatg
     2221 aggaggtcgt ccttggtcct cgcgtaggtg aagaccgtac cgccggcgac gccggccccg
     2281 tcggcgattt cctgcgaggt cgtggcttcg aatcccttgc gggtgaacag gtctcgagcc
     2341 gccgcgataa tgcgcccgcg cttgtcgagt ttgttctgtt cgcggcgtcc taaagcggcg
     2401 gtggccaacg gatcctccgg acgggggttg tcttgctgat ggacagcatc ctcccatctg
     2461 acatttccgt caataaaaat gagtggactc atttttagga tgtcacggga agctgagggc
     2521 caaatggccc cggtgagtca gaaacggacc ttctgaccca tgtcggcccg tctccgtcag
     2581 ggctcgaaaa cagacgttcg ggtcttggcc ggatctggcc gcggctcggg ccgcctggag
     2641 cccgctccag cccgcaagcg gcgctatggg tcatgtccgg ttcaggttgc cgggcgcatc
     2701 tggccgtcgc agcgacggtc ttttcacgag cctatcgacc gccactaccc ctttccccga
     2761 ggaggcggtg gccgtcgcag cacaaattct ctcgccgcca agctctgcgg agcgtcaggc
     2821 ccgcgccgga tcaggccgga acttcgtgga catctcgtcg cgccgcaggc cgcccagggc
     2881 cgcggcgacg caggcgatga acgcgcccag caacaggccg acccccagga acagcgaaaa
     2941 ctgcgcggcg acattggtgt cgcgctcggt ggccatcatc gccagcgccg ccgcatgctc
     3001 ggcgggcgga gccagcacgg tcgcggccag aaccacgccg gccacggtgc tcagagccca
     3061 gaccagcagg ccgtgggctg tatcgcggaa atggacctca tggctgtgga cgttgagcca
     3121 cctggtccgc aaccggccgg ccagatagcc gcccagcgcg ctcgccagca cctgcaccac
     3181 gatcatccag gcgcccagga tcggggtgaa ctcggcgagc gacgggcgcg cgccgggcca
     3241 gggcgaggcg agcttcaggc caaagccggc cgccagaccc aggagggcga gggacagggc
     3301 cagcgccgcc aaggcgccgg cgaagatggc
//
LOCUS       DATAJL010000959         2540 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_76937,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000959 DATAJL010000000
VERSION     DATAJL010000959.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2540)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2540)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2540
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76937"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..841)
                     /locus_tag="VHN39_18110"
     CDS             complement(<1..841)
                     /locus_tag="VHN39_18110"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEX2818313.1"
                     /translation="MRDGEQSPGASMSHDEKLELAKILEEMKVDVIEAGFPIASNGDF
                     EAVREVSRIVTESTVAGLCRANAMDIDRCAEAIRPAKRGRIHIVIATSELHMKHKLQM
                     EPEVVLEAITRSVGHARNLCDDIEWSAEDATRSEPAFLRRAIEAAIRAGAKTINLPDT
                     VGYTYPSEYAALFQDMISTVEGADGVVFSTHCHNDLGLAVANSLAGVQGGARQVECAI
                     NGLGERAGNAALEEIVMALKVRGDRLPYFTGVETQHITRASRYVSAITGFPVQFNKAI
                     VGKN"
     gene            complement(1153..1773)
                     /locus_tag="VHN39_18115"
     CDS             complement(1153..1773)
                     /locus_tag="VHN39_18115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008263124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2818314.1"
                     /translation="MLKLFHAWGSCSLASAIVLEEAGADYKLVQMDTKAGDQRTPEYL
                     AVNPKGRVPALVTDRGVLTETPAILAFIAQSYPEAKLAPLDDPYAFARAQAFNSYLCS
                     TVHVAHAHKHRGYRWTDDPVAQAAMTAAVPRNEIACFQLIEDEMLAGPFVLGEAYSIC
                     DAYLFTLTGWLAGDGVDRRQFPRVNALYDRVAARPAARKVLAQQPA"
     gene            complement(1773..2480)
                     /locus_tag="VHN39_18120"
     CDS             complement(1773..2480)
                     /locus_tag="VHN39_18120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012285540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEX2818315.1"
                     /translation="MRRLFQVLSNMDAQAWRTLLITFVLFGGVGLVFVFGAPMLGLNG
                     EATVQEWMRAVPGPWSLPVAVLAFAVLAFVGVPQIMLIAAAVVAFGPVTGFAYSWVGT
                     MVSSLVGFYLGRAAGAATLERFSGEGVRRFMELVGRNGFFASFIVRLVPSAPFIVVNM
                     AAGVTPMRVVDFTLGTAIGIVPKIVLTAFAGNSIVRLMKGEIGKDALWLVAIAVAWVA
                     IGLVARAWLRSREKETI"
BASE COUNT          449 a          846 c          844 g          401 t
ORIGIN      
        1 cgttcttgcc gacgatggcc ttgttgaact gcaccggaaa gccggtgatg gccgagacgt
       61 agcggctggc gcgggtgatg tgctgggtct cgactccggt gaaatagggc aagcggtcgc
      121 cacgcacctt caaagccatg acgatttctt ccaacgcggc gttgccggcc cgctcgccca
      181 gtccgttgat cgcgcattcc acctggcgcg ctccgccctg cacgccggcc aggctgttgg
      241 cgaccgccag ccccaggtcg ttgtggcagt gggtggaaaa caccacgccg tccgcgccct
      301 ccacggtcga gatcatgtcc tggaaaaggg ccgcgtattc cgagggatag gtgtagccca
      361 cggtgtcggg caggttgatg gtcttggcgc cggcgcgaat ggccgcctcg atcgcccggc
      421 gcaggaaagc cggctcgctg cgggtcgcgt cctcggctga ccattcgatg tcgtcgcaca
      481 gatttcgggc atggccgacg gagcgggtga tcgcctccag cacgacctcg ggctccattt
      541 gcagcttatg cttcatgtgc agttcgctgg tcgcgatgac gatgtggatc cgcccgcgct
      601 tagcagggcg gatagcctcg gcgcagcgat cgatgtccat ggcgttggcg cgacagaggc
      661 cggccaccgt gctttccgtc acgatcctcg aaacctcgcg cacagcctcg aagtcgccgt
      721 tggaggcgat ggggaaaccg gcctcgatga catcgacctt catttcctcg aggattttgg
      781 cgagttccag cttctcgtca tgtgacatcg aggcgccggg cgactgctcg ccatcgcgca
      841 tggtggtgtc gaacacgatg acccgatctt gcgcggcgcc ttgggcgcgc tccgggcgcg
      901 gggctgcgga tgcatctgcg gattctgggg cggaggtcgt catggtcttg gtctcttcgc
      961 ggaagttgct ggggtcaggc ggctttggaa aacccctgaa cgcccggccg cgaagacgcg
     1021 cagcctagag aggcgcccag gggcggctaa gccccagcga aagaagaagc aggctggcag
     1081 tgcgcgtgcg catggccaca gcgtctaccg aatgggggtt aatggcgcaa ccatcttgcg
     1141 tcgaatggcc actcaggccg gttgttgagc aagaaccttg cgcgcggccg gtcgggccgc
     1201 cacccgatcg tagagcgcat tgaccctggg gaattgccga cggtccacgc cgtcgccagc
     1261 cagccagccg gtgagcgtga agagataggc gtcgcagatc gaataggcct cgcccagaac
     1321 gaaggggcca gccagcatct cgtcctcgat cagctggaaa caggcgatct cgttccttgg
     1381 cacggcggcg gtcatggccg cctgggccac cgggtcgtcc gtccaacgat aaccgcgatg
     1441 cttgtgggca tgcgcaacat gcaccgtgga gcagaggtag ctgttgaacg cctgggcccg
     1501 agcgaaggcg tagggatcgt ccagcggcgc cagcttcgcc tcaggatagc tttgggcgat
     1561 gaaggccagg atcgccgggg tctccgtgag cacgccccgg tcggttacca gcgccggcac
     1621 ccggcccttc gggttgacgg ccaggtattc gggcgtccgc tggtcgccgg ccttggtgtc
     1681 catctggacg agcttgtagt cggcgccggc ctcctccaga acgatcgccg aggccaggga
     1741 gcaggacccc caggcgtgga acagcttcag catcagatcg tctccttctc ccggctcctc
     1801 agccaggccc gcgccaccag gccgatcgcc acccaggcca cggcgatcgc tacgagccag
     1861 agcgcgtcct tgccgatctc gcccttcatc agccgcacga tcgaattgcc ggcgaaggcg
     1921 gtcagcacga tcttgggcac gatgccgatc gcggtcccga gcgtgaagtc cacgacccgc
     1981 atgggtgtca cccctgccgc catattgacc acaatgaagg gcgccgaggg caccaggcgg
     2041 acgatgaagc tcgcgaagaa gccgttgcgg ccgaccagtt ccatgaaccg ccgcacgccc
     2101 tccccggaga agcgctccag ggtcgcagcg cccgccgcgc ggcccaggta gaaacccacc
     2161 agcgacgaaa ccatggtgcc gacccagctg taggcgaacc cggtgaccgg cccgaaagcc
     2221 accaccgcgg cggcgatcag catgatctgc ggcacgccca cgaaggccag gaccgcgaag
     2281 gccagcaccg ccaccggcag cgaccagggc ccgggaaccg cccgcatcca ttcctggacc
     2341 gtcgcctcgc cgttcagccc cagcatcggc gcgccgaaca caaagaccag gcccacgccg
     2401 ccgaacagga caaaggtgat caacagcgtc cgccacgcct gggcgtccat gttcgacagg
     2461 acctggaaga ggcgacgcat gtggcccctg aggtcgccga tcaggcggag ggggtcaagc
     2521 tgcgccgcaa cacgccgggt
//
LOCUS       DATAJL010000960         1865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_76997,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000960 DATAJL010000000
VERSION     DATAJL010000960.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1865
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76997"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..171
                     /locus_tag="VHN39_18125"
     CDS             16..171
                     /locus_tag="VHN39_18125"
                     /inference="COORDINATES: protein motif:HMM:NF013413.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818316.1"
                     /translation="MARRGWSDQALAKLAGGNVLRVMRQAQEVGKALRATTPASASTL
                     ADLDGPT"
     gene            183..>1865
                     /locus_tag="VHN39_18130"
     CDS             183..>1865
                     /locus_tag="VHN39_18130"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2818317.1"
                     /translation="MGDGKCSPIGHMKQRVISMNRLALRLAVIVALLSLPTALLAQVR
                     PASDTPGRTPSGVAFTQPKDWSVTVQGAATVFASPEDNLSIAVIDAGNAPTAQAAAAK
                     AWSLYKPNATRPIRLVTSGTRGDGWDERVTIAYETSPSERATASALAMRSGTSWTVLI
                     VDGAEATMNKRAAAASIIERSLRPAGYVRETFAGKTAHRLTPERIRTLRDFVAESART
                     LEVPGVGIALIDQGKVVWQGGVGVRALGSAAPVDAHTKFMIASNTKGMSTLLLSVLAD
                     EGKLRWDQKVTDLYPSFRLGSDATTKATLVRNLVCACTGLPRKDYAFILADSGAPASD
                     TFRQLSETQPTSRFGELFQYNNLMAAAAGYLGGSLAYPNLELGAAYDKAMQTRIFGPL
                     GMHDTTFDFKVGESGDWARPHGFDVDGRMVVMSNDFNHLIAPHRPAGGAWSSAADMAR
                     YAQLELSKGLTSDGKRLVSEANLLERRKRGVPTGEDAWYGMGLFDEVVSGVPVVTHGG
                     TLQGYHSNFWVLPEAGIGAVILTNSDSGPAILGPFLRRLLEVVYDGKPEAAQE"
BASE COUNT          307 a          604 c          627 g          327 t
ORIGIN      
        1 gcgttgctgg ccgagttggc gcgccggggc tggagtgacc aagccctggc caagctggcc
       61 ggtggcaatg tcctgagggt catgcgccag gctcaagagg tcgggaaggc gcttcgggcg
      121 accacccctg catcggcgtc caccttggcc gacctggacg gtcctaccta gctcggcctc
      181 acatgggcga cggaaaatgc tctcctatag gccatatgaa acaaagggtt atatcgatga
      241 ataggttagc cctgaggctt gcggtcatcg tcgccttgct gagccttccg accgcgttgc
      301 tggctcaggt tcgccccgcg tccgacacgc cggggcggac cccatccggc gtcgccttca
      361 cgcagcccaa ggactggtcg gtgacggtcc agggtgcggc gacggtcttt gcgtcgcccg
      421 aagacaatct gagcatcgcc gtcatcgatg cgggaaacgc tccgacggcc caggcggctg
      481 cggcgaaggc ctggtcgctc tacaagccca acgccacgcg gcccatacgg ctggtcacct
      541 ctggcacgag gggtgatggc tgggacgaac gcgtgaccat cgcctatgag acctcgccta
      601 gcgaacgggc caccgcgtcg gcccttgcca tgcgaagtgg gacctcctgg accgtcctga
      661 tcgtcgacgg cgcggaagcg accatgaaca agcgcgccgc ggcggcgtcg atcattgagc
      721 ggagccttcg gcccgccggg tacgtgcgcg agaccttcgc cggcaagacg gcgcatcggc
      781 tcacgcctga gcgcatacgg accttgcgcg atttcgttgc ggagtccgcg cggactcttg
      841 aagttccggg ggtcgggatc gccttgatcg atcagggcaa ggtggtctgg cagggtggcg
      901 tcggcgtgcg cgcgctgggg tccgccgcgc cggtcgacgc ccacaccaag ttcatgatcg
      961 cctccaacac caaggggatg tcgacgcttc tgctgtcggt gctcgccgat gagggcaagc
     1021 tgcgctggga ccaaaaggtc accgatctct acccgtcgtt ccggctgggc agcgacgcca
     1081 cgacgaaggc gaccctcgtt cggaacctcg tctgcgcttg caccggcctg ccgcggaagg
     1141 actatgcgtt catccttgcc gacagcgggg cgccggcgtc cgacaccttc cggcaactct
     1201 cagaaactca gcccaccagc cgctttggcg aactgttcca gtacaacaac ctgatggcgg
     1261 cggcggccgg ctatttgggc ggctcgctcg cctatccgaa tctcgagctc ggcgccgcct
     1321 acgacaaggc catgcagacc cggatcttcg ggccgcttgg gatgcatgac acgacctttg
     1381 atttcaaggt tggcgagagt ggcgactggg cgcggccgca cggtttcgat gtcgacggcc
     1441 ggatggtcgt gatgtcgaac gacttcaatc acttgatcgc tcctcatcgc cctgccggcg
     1501 gggcctggtc gagcgccgcc gatatggcgc gatacgcgca gctcgaattg tcgaaggggc
     1561 taacctccga cggcaagcgg ctggtgagcg aggccaacct gctggagcgc cgcaagcgtg
     1621 gcgtgcccac gggagaggat gcctggtatg gaatgggcct cttcgatgag gtcgtctcgg
     1681 gcgtgccggt cgtcacccac ggcgggaccc tgcagggcta tcacagcaac ttctgggttc
     1741 tgcctgaggc gggaatcggt gcggtgatac tgaccaactc tgactccggt cccgccattc
     1801 tgggtccgtt cctccgccgc ctcctggagg tcgtgtacga cggcaagccc gaggcggcgc
     1861 aggag
//
LOCUS       DATAJL010000961         5220 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_77136,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000961 DATAJL010000000
VERSION     DATAJL010000961.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5220)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5220)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5220
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77136"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..605)
                     /locus_tag="VHN39_18135"
     CDS             complement(<1..605)
                     /locus_tag="VHN39_18135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818318.1"
                     /translation="MRLSAIDAGRDGERISGFLTAGGDERIVLDPQTGLNRYGCAASP
                     RGDLAAFGSSTASVISWSARDAVAHSLRRLSARTTYAQEVRGVRERLAQLCGLPDAAA
                     GDLILAASGTDLHLIAAALASDGESPLTVLLADPAETGRGVPDAVRCRRFATLTPHGA
                     PGEAGQPLAGAVGGETVGIPVREPTGGLRPTDAVDADFERA"
     gene            complement(738..875)
                     /locus_tag="VHN39_18140"
     CDS             complement(738..875)
                     /locus_tag="VHN39_18140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009636 - response to toxic substance
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HEX2818319.1"
                     /translation="MRKLIVLAAAMSALLVASCNTVAGVGKDVQAAGQAVTKTADDVK
                     K"
     gene            1097..1825
                     /locus_tag="VHN39_18145"
     CDS             1097..1825
                     /locus_tag="VHN39_18145"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2818320.1"
                     /translation="MPTDNGHFDSPADAALAPFRCYAAFLAWTQEGALAVSQAAAETT
                     ANLMTLGSQRTRIRLDWTQAVGRALADLASTALDAQAAEHGGLESGNHTKEVAMRVSD
                     CMTREVQIVDPNDTIAGAAKTMAKLDAGILPVGEDDRLVGMITDRDIAIRAVAAGMGP
                     QAKVGDVMNSEVKYCFEDQEVDEVLRNMGELQVRRLPVLNRDKRLVGIVSLSDMAGNG
                     EARRAADALSHISRPGGLHSQTAH"
     gene            1897..2274
                     /locus_tag="VHN39_18150"
     CDS             1897..2274
                     /locus_tag="VHN39_18150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2784 domain-containing protein"
                     /protein_id="HEX2818321.1"
                     /translation="MNLAVSQAVLAIHLVVIAFNVAGLVAIPVGAALRWRWVRIRWWR
                     ALHLASWAAVAVQAAFGRACFLTLLQDELTGSGDRPPLIERWVERLIYWPLPIWVFAA
                     IYIVLFAAVVALWWGVPTRRMTA"
     gene            2318..3463
                     /locus_tag="VHN39_18155"
     CDS             2318..3463
                     /locus_tag="VHN39_18155"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2818322.1"
                     /translation="MADGSVQGFTQDRYAAVRAAFEANLASGADVGASFCATLEGETV
                     VDLWGGFADPGKTRAWAKDTIVNVYSTTKTMTALTALLIADRGELDFDAPVARYWPEF
                     AANGKADIKVSHLMAHSAGLSGWRERVTTEDLYDWDKVCALLAAQAPLWEPGTAPGYH
                     AITQGYLVGEVVRRITGKSLGTVFREEIAEPLGADFHIGLPASEDARVAELIPPPAGQ
                     AASDGEQTEIQKISFNNPTVDVSATKTRGWRGAEIPAAGGTGNARAVAEIHTILANGG
                     VAKGKRFMSEAGCRKALDLQIEGPDLVLGMPSRFGMGFGLAGGIVPLPNPEDSMYWGG
                     YGGSIIMIDMKARTTLSYAMNKMAGTTTGDMRAFGLAMAMWTALGAI"
     gene            3468..3791
                     /locus_tag="VHN39_18160"
     CDS             3468..3791
                     /locus_tag="VHN39_18160"
                     /inference="COORDINATES: protein motif:HMM:NF017320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CHY zinc finger protein"
                     /protein_id="HEX2818323.1"
                     /translation="MRAPVHGLDLDRETRCTHWNSPLDIIALKMACCGTYYACRDCHD
                     ALADHPAQAWPQAEWGESAVLCGACGTELSVREYLGCESQCPACGAGFNPGCHKHLNL
                     YFETD"
     gene            complement(3804..4961)
                     /locus_tag="VHN39_18165"
     CDS             complement(3804..4961)
                     /locus_tag="VHN39_18165"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2818324.1"
                     /translation="MAEGFVLEIPEQVGLAVATARKPQAGAQVWPAGTRIVSADSHML
                     EPDLWIERFPEHLRDQAPRMIFHDGGWDLSVGGKPMTPEPVAAALCNALECYPGLTDL
                     DARMADLDIEGVEKELIFPQRLFGLMMFGEIEHKAHVFGAYNEHIGEVCARSNGRCYP
                     VMVPSYWEPEAATDSVARCVELGARCLMVPIKPGKFADGRTIQYNHGRMDPLWAAIEA
                     SGLPLAFHIGEAIPTAEPGAVGVSVLTQMQGFRQNWAQLTFGGVFDRFPSLKVVFVEA
                     GLSWIPGMLHDADMIYNSFPTMVAPKLAHPPSWYWRAHCYATFMTDPVGLEMLHRIGA
                     DRVMWSSDYPHQESTFGYTRSAIEAVFKATSVEDAQKILGKTALELFRMED"
BASE COUNT          832 a         1753 c         1827 g          808 t
ORIGIN      
        1 caggcgcgtt cgaagtcggc gtcgacggcg tcagtcggcc gaaggccgcc ggttggctcg
       61 cgaaccggga tgccgacggt ttcgccgccc actgcgccgg ccaggggctg acccgcttcg
      121 cccggcgcgc catgcggcgt cagcgtggcg aaccgtcggc agcgcaccgc atcgggcacg
      181 ccgcgcccgg tttccgcggg atcggcgagg aggacggtga gcggggattc gccgtctgag
      241 gcgagcgccg cggcgatcag gtgcaggtcg gtgccggacg ccgcgaggat caggtcgccg
      301 gccgcggcgt cgggcaggcc gcacagctga gccaggcgct cgcgaacgcc gcgcacttcc
      361 tgggcgtagg tcgtcctggc cgagaggcga cgcagggaat gcgcgaccgc gtcgcgggcg
      421 gaccaggaga tcaccgaggc ggtggacgag ccgaacgcgg ccagatcgcc cctagggctc
      481 gccgcgcaac cgtagcggtt caggccggtc tgtggatcca ggacgatgcg ctcgtcgccc
      541 ccggcggtga ggaaaccgga gattcgctcg ccgtcgcgac ccgcgtcgat cgcggaaagc
      601 ctcaaggctg cagttgacga catgcacgcg tccggaccgg tttgctcgcc cttggatagg
      661 cgcgccagag tcgcgtgaaa tgatgttgtg cgcgttaagg atttcgcacc gcgcgctatt
      721 ggcgcgcccg ccgcccgcta cttcttgacg tcgtccgcgg tcttggtgac ggcctggccc
      781 gccgcctgga cgtccttgcc cacgcccgcc acggtgttgc agctggccac cagcagggcg
      841 gacatggccg ccgcgagcac gatcagtttg cgcatcgaag atcccccgga acttggcagg
      901 ggatttccac gatggcgtgc ctacagtcaa gctcgccgcg ttcatcggga gcgccgtggc
      961 ggccgttcgg agcttaacgg atgtcggcgc tttttcgctt gtcaggcgaa ctttgcgagt
     1021 ccgccgccgg ttgaaggggc ggatcgggga ggcgtctccg gtccgaaacc tgaaaatcca
     1081 tcaaggagac cggcggatgc ctaccgacaa cggccatttc gactcgccag cggacgcggc
     1141 ccttgcgccg ttccgttgct atgcggcctt cctcgcctgg acccaggagg gagcgctggc
     1201 ggtaagccag gccgctgcgg agaccacggc gaacctgatg accctcggct cccaacggac
     1261 ccggatccgg ctcgactgga cgcaggccgt gggtcgcgcg ctggcggatc tggcgagcac
     1321 agccctggat gcgcaggccg ccgaacacgg aggtcttgag tcgggaaacc acaccaagga
     1381 ggtagcgatg agagtgagcg attgcatgac ccgcgaggtt cagatcgtgg accctaacga
     1441 caccatcgcc ggcgcggcga agaccatggc gaaactcgac gccggcatat tgcccgtcgg
     1501 cgaggacgac cggctggtcg gcatgatcac cgaccgcgac atcgccatcc gcgcggtggc
     1561 ggccggaatg ggaccgcagg ccaaggtcgg cgacgtgatg aactccgagg tcaaatactg
     1621 cttcgaagat caggaggtcg atgaggtcct gcgcaacatg ggtgagctgc aggtgcgcag
     1681 gctgccggtg ctgaaccgcg acaagcgcct cgtggggatc gtgtcgctca gcgacatggc
     1741 gggcaatggc gaggccaggc gcgccgccga cgcgctcagc cacatctcca ggccgggcgg
     1801 cctgcactcc cagaccgccc actgacgagg gtccccggct gaggcgtttg cccgctgtcc
     1861 cttctccctt tgcgggagaa gggacacagt cggccaatga atctggccgt cagccaagcc
     1921 gtcctggcca tccaccttgt cgtcatcgcc ttcaatgtcg cgggtctggt cgccattccg
     1981 gtaggcgcgg cgctgcgctg gcggtgggtg cgcattcgct ggtggcgagc cctgcacctg
     2041 gcgtcctggg cggcggtggc ggtgcaggcc gcgttcggcc gggcgtgttt cctgacgctg
     2101 ttgcaagatg agctgacggg atcgggcgat cggccgcccc tgatcgagcg ctgggtcgag
     2161 cgcctcatct actggccgct gccgatctgg gtgttcgcgg cgatctacat cgtgctgttc
     2221 gccgcggtag tcgcgctatg gtggggcgtt ccgacccgcc ggatgacggc ctaggcgcgc
     2281 tcctgtaagg gggaaagcaa caccagggga gagcgcgatg gccgacggtt cagttcaggg
     2341 gttcacgcag gaccgctacg ccgccgtccg ggcggccttc gaggccaatc tggccagcgg
     2401 cgccgacgtg ggcgcctcct tctgcgccac gctggagggc gagacggtgg tcgacctctg
     2461 gggcggcttt gccgacccgg gcaagacacg ggcctgggcg aaggacacca tcgtcaacgt
     2521 ctattcgacc accaagacca tgacggcgct taccgcgctg ctgatcgccg accgcggcga
     2581 gctcgacttc gatgcgcctg tcgcgcgcta ctggccggag ttcgccgcca acgggaaggc
     2641 cgacatcaag gtcagccacc tgatggcgca ctcggccggc ctttccggct ggagagagcg
     2701 cgtcaccacc gaggaccttt acgactggga caaggtctgc gccctgctgg ccgcccaggc
     2761 gccgctctgg gagccaggga ccgcgcccgg ctaccacgcc atcacacagg gctatttggt
     2821 gggggaggtg gtgcgccgga tcactggcaa gtcgcttggg acagtgttcc gcgaggagat
     2881 cgccgagccc ctgggcgccg acttccacat cggcctgccg gcctcggaag acgcccgcgt
     2941 cgccgagctg atcccaccgc ccgcgggcca ggcggccagc gacggcgagc agaccgagat
     3001 ccagaagatc agcttcaaca accccaccgt cgatgtctcc gccaccaaga cgcgcggctg
     3061 gcgcggcgcg gaaatccccg ccgccggcgg cacgggcaat gcgcgggcgg tggccgagat
     3121 ccacaccatc ctggccaacg gcggcgtggc caagggcaag cgcttcatgt ccgaggccgg
     3181 ctgccgcaag gcgctggatc tgcagatcga ggggccggac ctggtcctgg gcatgccgtc
     3241 ccgcttcggc atggggttcg gcctggccgg cgggatcgtg cccctgccga accctgagga
     3301 cagcatgtac tggggcggct acggcggctc gatcatcatg atcgacatga aggcccgcac
     3361 gacgctgtcc tacgccatga acaagatggc cgggacgacg accggcgata tgcgcgcctt
     3421 cggcctggcc atggccatgt ggaccgcgct gggggcgatt taggtctttg cgtgcacccg
     3481 tccacggcct cgatctcgac cgcgagaccc gttgcaccca ttggaatagc ccgctcgaca
     3541 tcatcgcgct caagatggcc tgctgcggga cctactacgc ttgccgcgac tgccacgacg
     3601 cgctcgccga ccacccggcg caggcgtggc cgcaggccga gtggggcgag tccgcggtcc
     3661 tgtgcggcgc ctgcggaacc gagctcagcg tgcgggagta cctcggctgc gaaagccaat
     3721 gcccggcctg cggcgcgggg ttcaatccgg gctgccacaa acacctgaac ctgtattttg
     3781 agacggacta ggcgcgagcg gccctagtct tccatcctga aaagctcgag ggcggtcttg
     3841 cccaggatct tctgggcgtc ctcgaccgac gtggccttga acaccgcctc gatggcgctg
     3901 cgcgtatagc cgaaggtgct ttcctggtgc gggtagtccg aggaccacat cacccggtcg
     3961 gcgccgatcc tatgcagcat ctccagcccc acgggatcgg tcatgaaggt cgcgtagcag
     4021 tgcgcccgcc agtaccagct gggcggatgg gcgagcttcg gggcgaccat ggtggggaag
     4081 gaattgtaga tcatgtcggc gtcgtggagc atgccgggga tccacgacag gcccgcctcc
     4141 acgaacacca ccttcaggct ggggaaccgg tcgaagactc cgccgaaggt gagctgggcc
     4201 cagttctggc ggaagccctg catctgggtc agcaccgaga cgcccaccgc gcccggctcg
     4261 gccgtcggga tcgcctcgcc gatgtggaag gccagcggca ggccggacgc ctcgatggcc
     4321 gcccacagcg gatccatgcg cccgtggttg tactggatgg tgcggccgtc ggcgaacttg
     4381 ccgggcttga tcggaaccat caggcagcgc gcgccgagct cgacgcaacg ggccacgctg
     4441 tccgtcgccg cttccggctc ccagtagctc ggcaccatca ccggatagca gcggccgttc
     4501 gatcgagcgc agacctcgcc aatatgttcg ttgtaggcgc cgaacacgtg ggccttgtgc
     4561 tcgatctcgc cgaacatcat caggccgaac aggcgctgcg ggaagatcag ctccttctcc
     4621 accccctcaa tgtcgaggtc ggccatccgg gcgtcgaggt cggtcagccc cggatagcat
     4681 tccagcgcgt tgcagagcgc ggcggcgacc ggctcaggcg tcatcggctt gccgccgacg
     4741 gagaggtccc agccgccgtc atggaagatc atccgcggag cctggtcgcg caggtgttcc
     4801 gggaagcgct caatccagag gtcgggctcc agcatgtggc tgtcggccga gacgatgcgc
     4861 gtgccggccg gccagacctg cgcgccagcc tgcggcttgc gcgccgtggc gacggccagc
     4921 ccaacctgtt cggggatttc gaggacgaac ccttcggcca cggcggcctc ccgcgtctgc
     4981 tcggcggaag gctatcgcgc gtggcaggct gggtccaatg gagtcatagt gcgcgcacgg
     5041 cgagcaccgc cgagcatgga gggggccagg ccatggcgtc ttcgaaaagc cagttccgcg
     5101 cacgcctcgc ggccgtcagc gttcttgccg cggcccttct ggccggcgca gcggcggcag
     5161 agacctacaa ggttccgcac aacgcctatg gccagcccga cttctccggc gtctggacca
//
LOCUS       DATAJL010000962         3261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_125186,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000962 DATAJL010000000
VERSION     DATAJL010000962.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125186"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1130)
                     /gene="aroA"
                     /locus_tag="VHN39_18170"
     CDS             complement(<1..1130)
                     /gene="aroA"
                     /locus_tag="VHN39_18170"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEX2818325.1"
                     /translation="MTAAQMTARRAGPLKGTLRAPGDKSISHRALILGALARGRTEVE
                     GLLEGDDVKRTAAAMAPFGARVERTGPSPGGGGRWLIDGHGGFSEPSEVVDCGNAGTG
                     VRLIMGAAAGFDLAATFTGDASLRGRPMNRVLKPLGEMGAGWICRAGGRLPLTLRGGN
                     LKHIAYRLPEPSAQVKSAVLLAGLNAAGGAEVIEPEATRDHTERMLRAFGAEVIVTEE
                     GVSGRRIVLPGGQALTGTRVVVPGDPSSAAFPLVAALITPGSVVTVEGMLLNPLRIGL
                     LDTLGDMGADLSVTNVREEGGETVADVTARHSELVGVVVPPERAPSMIDEYPILAVAA
                     AFADGPTVMQGIGEMRVKESDRIALMAAGLSACGVSVEEGPD"
     gene            1261..1749
                     /locus_tag="VHN39_18175"
     CDS             1261..1749
                     /locus_tag="VHN39_18175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02300 family protein"
                     /protein_id="HEX2818326.1"
                     /translation="MANPELGSKQVCPNCQAKFYDLTKRPAHCPKCDTEFDPDEAIRS
                     RRTRARSAAPEPEAEVEAEADEGAEDQVLDPAEAEDEDEEDEVVTPELDEVIDDPVLA
                     ADDDDEAEPAPAVSEDLGEFTDEEEVEDDADVPFLEDEDEDEFDETEIEGLPDEGDAD
                     DR"
     gene            1878..1953
                     /locus_tag="VHN39_18180"
     tRNA            1878..1953
                     /locus_tag="VHN39_18180"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1911..1913,aa:Ala,seq:ggc)
     gene            complement(2123..2380)
                     /locus_tag="VHN39_18185"
     CDS             complement(2123..2380)
                     /locus_tag="VHN39_18185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818327.1"
                     /translation="MMLIAHTVDWVPLDHAAGEPVMIGDLVSAGVDRLPVYRVMAVDE
                     ACAWVATHPGAPQRMMSLAAMRWRGVVRLDCASNSRPASHS"
     gene            complement(2432..2743)
                     /locus_tag="VHN39_18190"
     CDS             complement(2432..2743)
                     /locus_tag="VHN39_18190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003168778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEX2818328.1"
                     /translation="MTDTLDLFVGKRVRWRRRLLELSQSDLADLIGVRFQQIQKYEAA
                     VNRLSAARLWTLACALGVDVQYFFEGWVDERRDAPQEASLLREQPGREDQGHEQQSQA
                     A"
     gene            2898..>3261
                     /locus_tag="VHN39_18195"
     CDS             2898..>3261
                     /locus_tag="VHN39_18195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818329.1"
                     /translation="MTGAPEQFTLSLLGPFRLIAPGGERIEVASRKGKALIAMLAMAN
                     EGERARRWLQEKLWGARQQAQAASSLRRELSDLRGLLNLGAGPLLITGNDRARLDLAR
                     LQVDAHTAGPDEIVSHEFL"
BASE COUNT          548 a         1145 c         1105 g          463 t
ORIGIN      
        1 ctgtcggggc cttcctcgac actcacgcca caggcagaaa ggcccgccgc catcagcgcg
       61 atccggtcgc tttccttgac ccgcatctcg ccgatgccct gcatcacggt gggcccatcg
      121 gcgaaggcgg cggcgacggc caggatcgga tattcgtcga tcatcgaagg cgcgcgttcc
      181 ggcggcacga ccacgcctac cagctcggaa tgccgcgcgg tgacgtcggc gacggtctcg
      241 ccgccctcct cgcggacgtt ggtcaccgac aggtccgcgc ccatgtcgcc gagggtgtcc
      301 agcaggccga tgcgcagcgg attcaacagc atcccctcca cggtcaccac cgagcccggg
      361 gtgatcaggg ccgccaccag ggggaaggcc gccgaggacg ggtcgcccgg aacgacgacc
      421 ctggtcccgg tcagcgcctg gccgccgggg agcacgatgc ggcggccgct cacaccctcc
      481 tcggtcacga tcacctccgc cccgaaggcc cgcagcatgc gctcggtgtg gtcgcgggtg
      541 gcctcgggct cgatcacctc ggcgccgccg gcggcgttca gcccggccag cagcaccgcc
      601 gacttcacct gggccgaggg ctccggcagg cggtaggcga tgtgtttcag gttcccgccc
      661 cgcagcgtca gcggcaggcg cccgccggcg cggcagatcc agcccgcgcc catctcgccc
      721 agcggcttca gcacccggtt catcggccgg ccgcgcaggg aggcgtcgcc ggtgaaggtg
      781 gcggccaggt caaagcccgc cgcggcgccc atgatcagcc gcaccccggt gccggcgttg
      841 ccgcagtcca ccacctcgga cggctcggaa aagccgccat ggccgtcgat cagccagcgg
      901 ccgcccccac caggacttgg cccggtccgc tcgacgcggg cgccgaaggg cgccatggcg
      961 gcggcggtgc gcttgacgtc gtcgccttcc agcaggccct cgacctcggt gcgcccacgg
     1021 gccagcgcgc ccaggatgag cgcgcggtgc gaaatggatt tgtcccccgg ggcccgcaaa
     1081 gtccccttca aggggcctgc gcgcctggcg gtcatctgag ccgccgtcat tggataagaa
     1141 cgcgcctccg cgagctggcg gttttgatga gggggattgc ttttgacagc cgccccctcg
     1201 cgtggcaagg gagcccgctt cgcgaccgcg ccccccacat atcttcaagg accatcgcct
     1261 ttggccaatc ccgagctggg ctccaagcaa gtctgcccca actgccaagc gaaattctac
     1321 gacctgacca agcgtccggc gcactgcccc aagtgcgaca ccgagttcga tccggacgag
     1381 gccatccgca gccgccgcac ccgcgcccgc tccgccgcgc ccgagcccga agccgaggtt
     1441 gaagccgagg ccgacgaggg cgccgaagat caggtgctcg atcccgccga ggccgaagac
     1501 gaggatgagg aggacgaagt cgtcaccccc gaactcgacg aggtgatcga cgatcccgtc
     1561 ctggccgccg acgatgacga cgaggccgaa ccggcccccg ccgtctccga ggacctcggc
     1621 gaattcaccg acgaggaaga ggtcgaggac gacgccgacg tgccgttcct ggaggacgag
     1681 gacgaggacg agttcgacga aaccgagatc gaaggcctgc ccgacgaggg cgacgccgac
     1741 gaccgctagg ggcgggccgc gacgaaaaac cctaaaatga cgggttgatc gcgcagggct
     1801 gtttgaatag gttccgcgcc ttcctaggcg gccggtgggt cgaccaggga gacccgagac
     1861 cctccttcgg gaggtttggg gctttagctc agctggtaga gcgattgcat ggcatgcaat
     1921 aggtcagcgg ttcgactccg ctaagctcca ccatgaaggc ccgcagcgaa agctgcgggc
     1981 cttcgccgtt tggggggtgg ggccgagtct ggttctgact catccgagac actgaggacg
     2041 tccgcttctg gcaatgagcc ggcggtccgg cggaacggca aggtttggcg caaggctggc
     2101 tttcaaagga gcgccagggc tttcagctat gtgaggccgg ccgggaattc gacgcacagt
     2161 ccagccgcac cacgcctcgc cagcgcatcg ccgccagcga catcatccgc tgcggcgcgc
     2221 cggggtgggt ggcaacccag gcgcaggctt cgtccacggc catgacgcgg tagaccggca
     2281 ggcggtcgac gccagcggag accaggtcgc cgatcatcac cggctcgccg gcggcatggt
     2341 ccaggggaac ccagtcgacg gtgtgcgcga tcagcatcat ctcagcctcg acccaggccg
     2401 aagacggcgg agttgtcggc tggacgccac gtcaggccgc ctggctctgt tgctcgtggc
     2461 cctggtcctc gcggcccggt tgctcgcgca ggaggctggc ctcctgaggg gcgtcgcggc
     2521 gctcgtcgac ccagccttca aagaaatatt ggacgtcgac gcccagggcg caggcgaggg
     2581 tccagagcct cgcagccgac agccggttta cggcggcctc atacttctga atctgctgga
     2641 accggacgcc gatcaggtcg gcgaggtcag actgcgacag ttcgaggagc ctacgccgcc
     2701 accgcacgcg cttgccgacg aataggtcca aggtatcggt catggccggc tccaggcggg
     2761 tgtgcgcaag caatgaacgg atcatcgcct gcgccaattc gcgcaacgtg aggtaagcgt
     2821 tcgcgcaacg tgaaattgcc gtgataaatg ccgcccaaat cgatattcag ggggcagtat
     2881 ccctagcggc ggacggtatg acgggcgcgc cagagcagtt cactctcagc cttctggggc
     2941 cctttcggct gatcgcgccg gggggcgaac ggatcgaggt cgccagccgc aagggcaagg
     3001 cgctgatcgc catgctggcc atggccaacg agggcgagcg cgcgcgccgc tggctgcagg
     3061 aaaagctctg gggcgcccgc cagcaggccc aggccgccag cagccttcgc cgcgaactct
     3121 ccgacctgcg cggcctcctc aatctggggg ccgggccgct gctgatcacc ggcaacgatc
     3181 gggcgcggct cgatcttgcc cgcctccagg tcgacgccca caccgcgggc cctgacgaga
     3241 tcgtctccca cgagttcctc g
//
LOCUS       DATAJL010000963         3898 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_125411,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000963 DATAJL010000000
VERSION     DATAJL010000963.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3898)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3898)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3898
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125411"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            76..1884
                     /locus_tag="VHN39_18200"
     CDS             76..1884
                     /locus_tag="VHN39_18200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818330.1"
                     /translation="MSEPANSEASGASASRQRLSQGMRLYGASARNLWPRVVASTAVA
                     TVAVQSMPPLWVAAWIATIWIGLIVGIRLIGQLERGPGAGAQKRLTRLVSLNTMASTL
                     LQAGILVAIWATGDEIGRAFAIVAAFVGATYVLLQYYSDLGRFRLLLSPYVGTFLYIA
                     FDLSRGAGWRITAIITCVATAVSMINFLFLSRRLLDRSRSSLRQARQRAQEGELAAES
                     ANSAKSTFLATMSHEIRTPLNGVLGMAQAMAGDELSDRQRDRLSVIHRSGEALLAILN
                     DVLDLSKIEAGKLELEQLEFELAEVARGAYSAFTALANKKGLSFALDIEDARGRYLGD
                     PTRLRQILYNLISNALKFTEQGEIRVTARRDGEMLEISVKDTGVGIPAESLSRLFAKF
                     DQLDSSTTRRFGGTGLGLAICRELAQLMTGEISVTSELGLGSIFTLRVPLAWLGEERA
                     VYTVAETMSERPEIALRVLAAEDNAVNQLVLKTLLHQMGVDPTVVENGRLAVEAWEGG
                     DWDVILMDIQMPVMDGLTATARIRNLEADTGRARTPIVALTANAMSHQVEQYISAGMD
                     GHVAKPIQATELFAALTRAAVPEQAKPGGGAAAEVA"
     gene            complement(1881..3428)
                     /locus_tag="VHN39_18205"
     CDS             complement(1881..3428)
                     /locus_tag="VHN39_18205"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HEX2818331.1"
                     /translation="MSRSAALAALILAGSFASLGATGGAQAAPPRSLGIADPDTKAWW
                     QIAETLSSDAMEGRDIGSAGHHRAAVIVAARFREAGLKPAGDNGTWFQTFAVHESRVE
                     KAGTSFQVTTPGAPPRPLAFLHQISVRPTDNLPADLDAPLTFRGYCGRSDLSGAKSKV
                     VVCFNTKRAGLPTAAQRTQAAEAAGAAGLIEVDDPYFTIEPPRWPAAYARSVVIAGSP
                     APAASSLPVMTLSAEAFTTLAAGSGQDADAILKAGGAKQPLPAFDLAGRLKAHFHLSK
                     RDFPAENVIGVMPGADPKLAAEHLVLSAHLDGYGYGEPVNGDGLYNGTLDDAAYVGTL
                     IRFADKHKGQPLRRSVVLAAFTGEEKGLLGAHWFVDHPSVAKAAIVADINLDQLRPLF
                     PLDILTELAVDDSTLGRTAREVAATMAIRIQKDPEPERGLLQRADHWPFMQAGIPGTG
                     FIFGYVPGTEAERRYREWYQVRYHRPQDDLTQPMDFEAAGKFNRFFYKLAETVADADE
                     KPAWTKP"
     gene            complement(3425..>3898)
                     /locus_tag="VHN39_18210"
     CDS             complement(3425..>3898)
                     /locus_tag="VHN39_18210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2818332.1"
                     /translation="AAIAKGSVDPNHLYVTGGSGGGALTAWIVGKTARFRAAAAQKPV
                     INWTSEVLTTDGYNFMATSWFGKMPWEDPEGYWKRSPLSLVGNVKTPTLVIVGTDDHR
                     TPPSEAEQFFDALQLRQVPTAMIQVPGASHGGLAERPSQSGAKARAILAWFDRFK"
BASE COUNT          591 a         1329 c         1343 g          635 t
ORIGIN      
        1 agtgtgcgaa cgacgttttc gtaaggttaa cttgcgtcag ccacgatgct cccaacgacg
       61 aatgggaggg ggctgttgag cgaaccagcc aacagcgaag cgtcaggtgc gtctgcgagc
      121 cgtcagcggc tttcgcaggg catgcgcctc tatggcgcct ccgcccgcaa cttgtggccc
      181 cgtgtggtcg cctcgaccgc cgtcgccacg gtcgcggtgc agtcgatgcc gccgctctgg
      241 gtcgcggcct ggatcgccac gatctggatc ggcctgatcg tcggcatacg gctgatcggt
      301 cagctggagc gcggcccggg ggcgggagcc cagaagcgcc tgacgcgcct tgtcagcctc
      361 aacaccatgg cctcgaccct gctgcaggcg ggcatccttg tggcgatctg ggccacgggc
      421 gatgagatcg gcagggcctt cgcgatcgtc gcggcgttcg tgggcgcgac ctatgtgctg
      481 ctgcagtact attccgacct gggccgtttc cggctcctgc tgtcgcccta cgtcgggacc
      541 ttcctctaca tcgccttcga cctgagccgc ggtgcgggct ggcgcataac ggcgatcatc
      601 acctgtgttg ccaccgcggt cagcatgatc aacttcttat tcctctcgcg ccgcctgctc
      661 gaccgctcgc gctcctccct gcgccaggcc cgccagcgcg cgcaggaggg cgaactggcc
      721 gccgagtccg ccaattccgc caagtcgacc ttcctggcca ccatgagcca cgagatccgc
      781 acgcccttga acggcgtcct gggcatggcc caggcgatgg ctggcgacga gctctccgac
      841 cgtcagcgcg accggctctc ggtcatccac cgctctggcg aagccctgct ggcgatcctc
      901 aatgacgtgc tggacctctc caagatcgag gccggcaagc tcgaactcga acagctggaa
      961 tttgagctgg cggaggtggc gcgcggcgcc tattcggcct ttacggcgct ggccaacaaa
     1021 aagggcctct ccttcgcgct ggacatcgag gacgcccgtg gccgctacct cggcgacccg
     1081 actcgtctgc gccagatcct ctacaacctg atctccaacg cgctcaagtt caccgagcag
     1141 ggcgaaatcc gcgtcaccgc caggcgcgac ggcgagatgc tggagatctc ggtcaaggac
     1201 accggcgtcg gcatcccggc cgagagcctg tcgaggctgt tcgccaagtt cgaccagctg
     1261 gattcgtcca ccacccgccg cttcggcggc accggcctgg gcctggccat ctgccgcgaa
     1321 ctcgcccagc tgatgaccgg cgagatcagc gtgacgagcg aactgggcct cggatccata
     1381 ttcaccctgc gcgtcccact ggcctggctc ggcgaggaga gggccgtcta cacggtggcc
     1441 gagaccatga gcgagcggcc ggagatcgcg ctgcgcgtgc tggccgccga ggacaacgcc
     1501 gtcaaccagc tggtcctgaa gacccttctg catcagatgg gcgtcgatcc caccgtggtc
     1561 gagaacggtc ggctggcggt cgaggcctgg gagggcggcg attgggacgt catcctgatg
     1621 gacatccaga tgccagtgat ggacggcctg accgccaccg cccggatccg caacctcgag
     1681 gctgacaccg gccgcgccag gaccccaatc gtggccctca ccgccaacgc catgtcccac
     1741 caggtggagc agtacatctc cgccggcatg gatggacatg tggccaagcc gatccaggcc
     1801 accgaactct tcgcggctct gacccgggcc gctgtccccg agcaggccaa gcccggcggc
     1861 ggggctgcgg ccgaggtcgc ctagggcttc gtccaggcgg gcttttcgtc ggcgtccgcc
     1921 accgtctccg ccagcttgta gaagaagcgg ttgaacttgc ccgcggcctc gaaatccatc
     1981 ggttgcgtca ggtcgtcctg cgggcggtgg tagcggacct gataccactc gcgatagcgc
     2041 cgctcggctt cggtcccggg cacatagccg aagatgaacc ccgtccccgg aatgccggcc
     2101 tgcatgaacg gccagtggtc ggcgcgctgc aaaaggccgc gctccggttc cgggtccttc
     2161 tggatgcgga tggccatggt cgcggccacc tcgcgcgctg tgcggcccag cgtggagtcg
     2221 tcgaccgcca gctccgtcag gatgtcgagc gggaacagcg ggcgcagctg gtccagattg
     2281 atgtcggcga cgatggcggc cttggccacg ctcggatggt ccacgaacca gtgggcgccg
     2341 agcaggccct tctcctcgcc ggtgaaggcc gccagcacga cgctgcggcg aagcggctgg
     2401 cccttatgct tgtcggcgaa gcggatcagg gtccccacat aggccgcgtc atcgagcgtg
     2461 ccgttgtaga gtccgtcgcc gttcaccggc tcaccatagc catagccgtc gaggtgggcg
     2521 gacagcacca gatgttctgc cgcgagcttc gggtcggcgc ctggcatcac tccgatcacg
     2581 ttctcggccg ggaagtcgcg cttgctgagg tgaaagtggg ccttaaggcg gccggccagg
     2641 tcgaacgcgg gcaggggctg tttggcgccg cccgccttga ggatggcgtc cgcgtcctgg
     2701 ccagagcccg cggccagggt cgtgaaggcc tccgcgctca gggtcatcac cggcaggctt
     2761 gacgcggcag gcgccggcga gccggcaatg accacgctgc gcgcataggc ggccggccag
     2821 cggggcggtt cgatggtgaa atagggatcg tcgacctcga tcaggccggc ggcgccggcg
     2881 gcctccgcgg cctgggtgcg ctgcgccgcg gtgggcaggc ccgcgcgctt ggtgttgaag
     2941 cagaccacca ccttgctctt ggctcccgac aggtcgctgc ggccgcaata gccgcggaac
     3001 gtcaggggag cgtccaggtc ggccggcaga ttatcggtgg gccgcacgct gatctgatgc
     3061 aggaaagcca gcggcctggg tggtgcgccc ggcgtcgtca cctggaacga ggtgcccgct
     3121 ttctcgaccc ggctctcatg gaccgcgaag gtctggaacc aggtcccgtt gtcgccggcc
     3181 ggcttcagcc ccgcctcccg gaagcgcgcc gcgacgatca ctgcggcgcg gtggtggccc
     3241 gccgagccga tgtcgcggcc ctccatggcg tccgacgaca gggtctcggc gatctgccac
     3301 caggccttgg tgtccgggtc ggcgatgccg agggacctgg gcggggcggc ctgggccccg
     3361 ccggtagccc caagacttgc aaaggagccg gcaaggatca gggcggcgag ggcggcgctt
     3421 cggctcattt gaagcggtcg aaccaggcga ggatcgcccg ggccttggcg cccgactgcg
     3481 agggccgttc cgccaggccg ccatgcgagg cgccgggcac ctggatcatg gcggtgggga
     3541 cctggcgcag ttgcagggcg tcgaagaact gctcggcctc cgacggcggg gtgcggtggt
     3601 cgtcggtgcc gacgatcacc agggtgggcg tcttcacatt gcccaccaac gagagcggcg
     3661 agcgcttcca gtagccctcg gggtcctccc acggcatctt tccgaaccag gacgtggcca
     3721 tgaagttgta gccgtccgta gtgagcacct cgctcgtcca gttgatcacc ggcttctggg
     3781 ccgcagcggc ccggaagcgg gcggtcttgc cgacgatcca ggcggtcagc gcgccgccgc
     3841 ctgacccgcc agtgacgtag aggtggttgg gatcgaccga acccttggcg atggctgc
//
LOCUS       DATAJL010000964         2843 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_125569,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000964 DATAJL010000000
VERSION     DATAJL010000964.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125569"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..975)
                     /gene="istB"
                     /locus_tag="VHN39_18215"
     CDS             complement(100..975)
                     /gene="istB"
                     /locus_tag="VHN39_18215"
                     /inference="COORDINATES: protein motif:HMM:NF013828.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
                     /protein_id="HEX2818333.1"
                     /translation="MTSTTTATTTTTSATMEHPKSTGRQPSEQAIDAAIDAATRLLRL
                     PTLRDRYGEFADAAGREQLSYRAFLSELLLAECDDREERRAARRVHEAGFPRPKTLAD
                     FDFAANTTINPATINTLAGCGWVSKGQSLCLIGDSGTGKSHLLIGLGTAAAQAGHKVR
                     YVLAAKLVNELVEAADERQLSRTIARYGRVELLCLDELGYMELDKRGAELLFQVLTER
                     EEKTAVAIASNDSFSGWTKTFTDPRLCAAIVDRLTFGGNIIETGTSSYRLAHARSQRQ
                     QGGATSSRHPGAKSS"
     gene            complement(972..2579)
                     /gene="istA"
                     /locus_tag="VHN39_18220"
     CDS             complement(972..2579)
                     /gene="istA"
                     /locus_tag="VHN39_18220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_041767552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HEX2818334.1"
                     /translation="MARSRVELFEAIRRDDRVEQLSVRALSDKYGVHRRTVRQALANA
                     VPPERKIPVRVAPKLDPAKGLIDAMLTLDLTAPRKQRHTARRILARLIDEHELTDLTY
                     SAVRDYVAKRRPEIWAAAGKGLEDAFVPQTHEPGAEGEVDFADLWIDLAGVRMKVFLF
                     TMRLSFSGKAVHRAYATQGQEAFLEGHQAAFEVFGGTPVFHIRYDNLKAAVSRVLFGR
                     TRTESTRWVAFRSHHGFEAFYCHPGVEGAHEKGGVEGEGGRFRRNHLVPVPKVDTMVE
                     LNALLIGYDVADDARRIGNRTLSVGQHFVFEASLLRPLPAELFETGLTLTPRVDRYSR
                     VTVRQCFYSVPTRLIGHQIRGVLHASELVLFSGRAEVARHERATVRGSEVLVLDHYLE
                     VLGRKPGALRGATALVQARAAGTFTNAHEAFWAAARKAHGDGGGTRALVEVLLLHRHH
                     AHADVVAGITAALLVGAVSPDVVALETRKHQQQQANPALPAVDDPVVVSLAERRLAEL
                     TDQLPTDRRPPPSVAAYDSLLTGTRDA"
BASE COUNT          429 a          933 c         1001 g          480 t
ORIGIN      
        1 ctgcgattgg aggtcggctg ggatggcgaa cagcccccgg caatcagtga gtacatccat
       61 atcgcgacgg gcgtccactt ccgccaaggc ctggccgtgt caactcgact tggccccagg
      121 atgacggctt gaagtggccc caccttgctg tcgttggctt cgggcgtggg cgagtcggta
      181 gctgctggtg ccggtctcga tgatgttccc gccgaaggtg aggcggtcga ctatggcagc
      241 gcagagccgc gggtcggtaa aggtcttcgt ccagccgctg aagctgtcgt tgctggcgat
      301 cgcgacggcg gtcttctcct cgcgttcggt gaggacctgg aacagcagct cggcgccgcg
      361 cttgtcgagt tccatgtagc ccagctcgtc aaggcaaagg agttcgaccc ggccgtagcg
      421 ggcgatggtg cgggatagct gacgttcgtc ggcggcttcg acgagttcgt tgacgagctt
      481 ggcggcgagg acgtaacgga ccttgtggcc ggcttgcgcg gcggcggtcc cgaggccgat
      541 gagcaggtga ctcttgccgg tgccgctgtc accgatcaag cacagtgact ggcctttgct
      601 gacccacccg cagccggcca gggtgttgat ggtcgcgggg ttgatcgtgg tgttcgcggc
      661 gaagtcgaag tccgcgaggg tcttgggtcg tgggaagccc gcttcgtgaa cgcgccgggc
      721 ggcgcggcgt tcctcccggt cgtcgcactc ggccagcagc agctcggaca ggaacgcccg
      781 gtaagacagc tgctcgcggc cggcggcgtc ggcgaactcg ccgtagcggt cccgcaacgt
      841 cgggagccgc aggagtcggg tggcggcatc gatcgccgcg tcgatggcct gctcgctggg
      901 ttgtctgccg gtgcttttcg gatgttccat cgtcgcgctg gtcgtggtcg tcgtggcggt
      961 ggtggtgctg gtcatgcgtc cctcgttccg gtgagcaggc tgtcgtaggc agcgaccgac
     1021 ggcggcggcc gacggtcggt cgggagttgg tcggtgagtt cagcgagccg acgttccgcc
     1081 aggctcacca cgacgggatc gtcgaccgct ggcagagccg gattggcctg ctgctgttgg
     1141 tgtttgcggg tctcgagggc aacgacgtcg gggctgaccg cgccgaccag cagtgcggcg
     1201 gtgatgccgg cgacgacgtc ggcgtgggcg tggtggcggt gcagcagcag cacctcgacc
     1261 agggcgcggg tgccaccgcc gtcgccgtgg gccttgcggg ccgcagccca gaacgcctca
     1321 tgcgcgttgg tgaaggtgcc ggcagcccga gcctggacca gggcggtggc gccgcgcagc
     1381 gcgccgggct tacgtcccag cacttccagg tagtgatcca gcaccaagac ctcgctgcct
     1441 cgcacggtcg cccgttcatg gcgggcgacc tcggcgcggc cgctgaacag caccagctcg
     1501 gaggcatgca gaacaccccg gatctgatgg ccgatcagtc gggtcgggac cgagtagaag
     1561 cattggcgga ccgtgacccg ggagtaccgg tcgacccgcg gggtcaaggt caggccggtc
     1621 tcgaacagct cggccggcag cggccgcagc aggctggcct cgaacacgaa gtgctgcccg
     1681 acactcaagg tgcggttgcc gatccgacgg gcatcatcgg cgacgtcgta gccgatcagc
     1741 agcgcgttga gctcgaccat tgtgtcaacc ttcgggaccg ggaccagatg gttgcggcgg
     1801 aacctgccgc cctcaccctc cacgccgccc ttctcatgcg cgccctcgac accggggtgg
     1861 cagtagaacg cctcgaaacc atggtgggaa cggaacgcca cccagcgggt cgactcggtg
     1921 cgcgtgcgac cgaacagcac ccgcgaaacc gccgccttga ggttgtcgta gcggatgtgg
     1981 aacaccggcg tccccccgaa cacctcgaag gccgcctggt gaccttccag gaacgcctcc
     2041 tggccctgag tggcatatgc gcggtggaca gccttgcccg agaacgacag ccgcatggtg
     2101 aacaagaaga ccttcatgcg gacccccgcc agatcgatcc acagatccgc gaagtcgacc
     2161 tcgccctccg cgccgggctc gtgggtctgc ggcacgaacg cgtcctccag acccttgccg
     2221 gccgcggccc agatctccgg ccggcgcttc gcgacgtagt cccgcaccgc cgagtaggtc
     2281 aggtcggtca gctcgtgctc atcgatgagc cgggccagga tccgccgggc ggtgtggcgc
     2341 tgcttgcgcg gcgcggtcag gtccaacgtc aacatcgcgt cgatcaggcc cttcgccggg
     2401 tccaacttcg gcgccacccg gaccgggatc ttccgctccg gcgggaccgc gttcgccagc
     2461 gcctgccgga ccgtccgccg atgcaccccg tacttgtcag aaagggcccg gaccgacaac
     2521 tgctcaaccc ggtcatcccg acgtatcgcc tcgaacaact ccaccctcga cctcgccact
     2581 tctgcccctc ccgatcacgc cgccagcaac acgacgagcc ttcggggtgg ggccagatca
     2641 gaccgtcata acagacgccc ggcgtgtcgg aggtggggcc aaatcaggcc gtcacggtgg
     2701 ggccagatca gactgacagg gccacgtcgg aggtactttc gcctttgtga gggttctggt
     2761 ggtgtcgacg cctggtgctg gacatgtgcg tccgctgctg ccgttggctg gcgcgttcgt
     2821 ctcaggcggc gatgaggtgc tgc
//
LOCUS       DATAJL010000965         2623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_125660,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000965 DATAJL010000000
VERSION     DATAJL010000965.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125660"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..371
                     /locus_tag="VHN39_18225"
     CDS             105..371
                     /locus_tag="VHN39_18225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818335.1"
                     /translation="MAEDKPDTAARANTAAPIEILAVSLYESDCRERAGDMARRTTLS
                     RIRAHYSFPAWTNLPPRERGAWRAKARKMIDEAGAWLAEEADWD"
     gene            422..1363
                     /locus_tag="VHN39_18230"
     CDS             422..1363
                     /locus_tag="VHN39_18230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018083374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2818336.1"
                     /translation="MLKRALLTASLLAAACLLAGAAPANAQARRWDIPAPKAPPGAIA
                     LKAPAAPASAPPETWSMSSSDNVPVVQNVSMPTLTPFLPPPGKATGAAVIIAPGGAFY
                     LLAMKHEGWDVARYLQAHGVAAFVLKYRVHPTEPKAAGLDKGLAALSAMAPAQRLAAL
                     DEGANVATQDAQEAMRVVKARAHEWHVDPARIGFMGFSAGAITTMSLAYADDPATRPA
                     FIAPLYGGLGAPTRPVPKNPPPMWAAMAADDPLFGKTDFALIPAWEAKGGAVELHLYE
                     KGGHGFGYPGRPGTTTLGWPDELLAWMHARGLLTVKK"
     gene            1402..1860
                     /locus_tag="VHN39_18235"
     CDS             1402..1860
                     /locus_tag="VHN39_18235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818337.1"
                     /translation="MLTSWTAAAQQVPIPGAGAWKMVQHAPPLADPPCFARIEGPDLN
                     TSLLLTRAGAPVISLGKGNEWSFEVQSAAITASVDGGPPIQLKATLGINLVMIPPSPD
                     LMQQLLHAQTIDWTLPLGHFRGQVAGYDAALAAVRQCVAARDGASAKPQV"
     gene            1946..>2623
                     /locus_tag="VHN39_18240"
     CDS             1946..>2623
                     /locus_tag="VHN39_18240"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2818338.1"
                     /translation="MRRIAVVAGFLALAAVTPARAAPAAPDATRPANLRDADIARLIR
                     FRVDQQHRATSVVVGVLRRSGASIVAYGPTGRARKTGGDTVFEIASLSKIFTDLLLAD
                     AVVRGDARLDDPLSAYVPPGVKVPGFQDRAITLTDLATHTSALPLRPNNLNAAPDTPN
                     KYASYTIGQLYGGLPDYRLTRPPGSKFEYSNLGVALLGQGLALHAHTTYASLLSARIT
                     GPLGLKDT"
BASE COUNT          403 a          984 c          866 g          370 t
ORIGIN      
        1 aataagaaca tacagggtag ccgcgagtca agtttttatc ggctcagtcc ccaattccgc
       61 tcatccccgc tttcacgggg atgagcgggg gttaggctgg cggaatggcc gaagacaaac
      121 ccgacaccgc cgcgcgcgcc aacactgcgg cgccgatcga gatcctcgcc gtctctctct
      181 acgagagcga ctgccgcgag cgggcgggcg acatggcgcg gcgcacgacg ctgtcgcgga
      241 tcagggccca ctacagcttc cccgcctgga caaacctgcc gccgcgggag cgcggcgcgt
      301 ggcgggcgaa ggcccggaag atgatcgacg aggcgggcgc atggctcgct gaagaggccg
      361 actgggattg aaagccggcc gccggtcccg ctaggtgggt cggagacctt gggggacgca
      421 catgctgaag cgcgcgttgt tgacggcgag cctgttggcc gcggcctgcc tcctggcggg
      481 agccgcgccc gccaacgccc aggcccggcg gtgggacatc ccggcgccca aggcgccgcc
      541 cggcgcgatc gcgctgaaag cccctgcggc tccagcctcc gcgccgccgg aaacctggtc
      601 catgtcgagc tccgacaatg tgcccgtcgt gcagaacgtc tccatgccca ccctgacacc
      661 gttcctgccg ccgcccggaa aggccaccgg ggcggcggtg atcatcgcgc cgggcggagc
      721 cttctacctg ctcgccatga agcacgaggg ctgggacgtc gcccgatacc tccaggccca
      781 cggcgtggcc gcgttcgttc tcaaataccg ggtccatccc acggagccga aggccgccgg
      841 actcgacaag gggctcgccg cgctgtcggc catggcgccg gcccagcgcc tggccgccct
      901 ggacgagggc gcgaacgtgg ccacgcagga cgcccaggaa gccatgcgcg tggtcaaggc
      961 gcgcgctcat gaatggcatg tcgacccggc ccggatcggt ttcatgggct tctcggccgg
     1021 cgccatcacc accatgagcc tggcctacgc cgacgacccg gcgacccgcc cggcgttcat
     1081 cgcgcccctc tacggcggcc tcggcgcgcc cacccgtccc gtgcccaaga acccgccgcc
     1141 catgtgggcc gccatggccg ccgacgaccc cctgttcggc aagaccgact tcgcgctgat
     1201 cccggcctgg gaggccaagg gcggcgccgt cgaactccac ctctacgaaa agggcggcca
     1261 cggcttcggc tacccgggcc gccccggcac gacgacgctc ggctggccgg atgagctgct
     1321 ggcctggatg cacgcgcggg gcctgctgac ggtgaagaag tgacccgcct ccgagcgctt
     1381 cccctggctt tggccgcggt catgctgacg tcgtggacgg cagccgccca gcaggtcccg
     1441 atcccgggcg cgggcgcctg gaaaatggtg cagcacgccc cgccattggc ggatccgccg
     1501 tgcttcgcgc ggatcgaggg gccggacctg aacacgtcgc tactgctgac ccgagccggc
     1561 gcgccggtca tttcgctggg caaaggaaat gagtggtcat tcgaggtcca gtcggcggcg
     1621 atcacagcct ccgtggacgg cggtccgccg attcagctga aggccacgct cgggatcaac
     1681 ctggtgatga tcccgcccag cccggacctg atgcagcaat tgctccacgc tcaaacgatc
     1741 gactggacac tcccgctcgg ccatttccgc gggcaagtcg cgggctacga cgccgcgctc
     1801 gcggccgtca ggcagtgcgt ggcggcgcgc gacggagcct cggcgaaacc acaggtctag
     1861 cggggtgcgt tcggcgtcct tgacttgccg acaccggcag gctcgcatcc accgtgagat
     1921 ttgaggaccg gcggcaggag ctcgcatgag acggatcgct gtcgtggccg gcttcctggc
     1981 gctggcggcc gtcacgcccg cccgcgccgc gccagcggcg cctgacgcca cccgtcctgc
     2041 gaaccttcgc gacgccgaca tcgctcggct gatccgcttt cgtgtggacc agcagcaccg
     2101 cgcgacctcc gtcgtcgttg gcgtcctgcg gcgctcgggc gccagcatcg tcgcctacgg
     2161 cccgaccggc cgcgcgcgca agaccggcgg cgacacggtc ttcgagatcg cttctctgtc
     2221 caagatcttc accgacctcc tgctcgccga cgccgtcgtg cgcggggacg cccggctgga
     2281 cgatccgctc tcggcctatg tgccgccggg ggtgaaggtc cccgggttcc aggaccgggc
     2341 catcacgctc accgacctgg ccacccacac ctccgccctg ccccttcggc ccaacaacct
     2401 gaacgccgcg cccgacacgc cgaacaagta cgccagctat acgatcggcc agctctacgg
     2461 cggcctgccc gactaccggc tgacccggcc gcccggatcg aagttcgaat attccaacct
     2521 gggcgtcgcc cttctgggcc agggcctcgc gctgcacgcc cacaccacct acgccagcct
     2581 gctgagcgcc cggatcaccg ggccgctggg cctgaaagac acc
//
LOCUS       DATAJL010000966         2584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_111971,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000966 DATAJL010000000
VERSION     DATAJL010000966.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111971"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..753
                     /gene="gatB"
                     /locus_tag="VHN39_18245"
     CDS             <1..753
                     /gene="gatB"
                     /locus_tag="VHN39_18245"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920294.1"
                     /note="allows the formation of correctly charged
                     Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation
                     of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms
                     which lack either or both of asparaginyl-tRNA or
                     glutaminyl-tRNA synthetases; reaction takes place in the
                     presence of glutamine and ATP through an activated
                     phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit B"
                     /protein_id="HEX2818339.1"
                     /translation="AIEYEARRQIEILEDGGKIDQETRLYDPTKNETRFMRSKEDAHD
                     YRYFPDPDLLPLDLDPAWVKAIEATLPELPDAKKARMQSQYGLTAYDAQVLITEQARA
                     DFYEAAAKGRDAKLTANWVTNDLAARLTAGSLDIADSPIKPDGIAELVQLIEEGVISS
                     KIAKDVFERMWAGEGRAREVVEKQGLQQVSDTGALDAIIDKLIADNPGQAAQVKEKPQ
                     AIGWFVGQVMKETGGKANPGVINQMLKAKLGG"
     gene            complement(754..1260)
                     /locus_tag="VHN39_18250"
     CDS             complement(754..1260)
                     /locus_tag="VHN39_18250"
                     /inference="COORDINATES: protein motif:HMM:NF023204.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RcnB family protein"
                     /protein_id="HEX2818340.1"
                     /translation="MRRLISALAAVVLVAAPLATAGGAMAKDHRDERREQPAARGGGA
                     RQQQAQPYRGGAQEPRGGERIERADPRNDPRSDPRNDPRYDPRNGYQAERVDPRYDPR
                     YSQPPSGYQNAPRRGGYLPQGGPVIQDPGRYRLRPPPRGYDWVRTPGGMALVQQGTGR
                     VYDVVPNE"
     gene            1520..1792
                     /locus_tag="VHN39_18255"
     CDS             1520..1792
                     /locus_tag="VHN39_18255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEX2818341.1"
                     /translation="MLAQLQVANEGLPLPSAEATGDELFRLGLLYSTGQGGAPLDYVS
                     AHMLFNLAAMRGSVEAKVYRKELSEEMASDQVAEAQRQAREWLAHG"
     gene            1962..>2584
                     /locus_tag="VHN39_18260"
     CDS             1962..>2584
                     /locus_tag="VHN39_18260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818342.1"
                     /translation="MNLKTGLLAAVALVSLAGVGAAQAGTLTPIPSYVDPAGGTTSVL
                     GINNAGWMTGNIFEPDGTSLGFVRDAAGVYTTFSVNGLPSTFGRAIDNSNNVIGYATD
                     ASNGFPTDTEFKRSTGGVVTVLQNPTTLANLHGIAQGVNASGAIVGDYESGAGATPPL
                     LGYILDGASFTSLTAPGSTRTSARGIEDDGTVAGWAVIGGIENGFIY"
BASE COUNT          460 a          879 c          844 g          401 t
ORIGIN      
        1 gccatcgaat atgaggcgcg ccgtcagatc gagatcctcg aggacggcgg caagatcgat
       61 caggaaaccc gcctctacga cccgacgaag aacgagacgc gcttcatgcg ctccaaggaa
      121 gacgcgcacg actaccgcta cttcccggac cccgacctgc tgcccctcga cctggacccg
      181 gcgtgggtga aggccatcga ggcgaccctg ccggagctgc cggacgccaa gaaggcgcgg
      241 atgcagtcac agtacgggct caccgcctac gacgcccagg tgctgatcac cgagcaggcg
      301 agggcggact tctacgaagc cgcggccaag gggcgcgacg ccaagctgac cgccaactgg
      361 gtgaccaacg acctggccgc gcgcctcacc gccggcagtc tcgacatcgc cgacagcccc
      421 atcaagcctg acggcatcgc cgagctggtc cagctgatcg aggagggggt tatctcctcc
      481 aagatcgcca aggacgtctt cgaacgcatg tgggccggcg agggcagggc ccgcgaggtg
      541 gtcgaaaagc agggcctgca gcaggtctcg gacaccggcg cgctggacgc catcatcgac
      601 aagctgatcg ccgacaatcc cggccaggcc gcccaggtga aggaaaagcc gcaggccatc
      661 ggctggttcg tgggccaggt gatgaaggag accggcggca aggccaatcc gggcgtcatc
      721 aaccagatgc tgaaggccaa gctcggcggc tagctactcg ttgggcacca cgtcgtagac
      781 gcggcccgtg ccctgctgga ccaaagccat gccaccgggc gtgcgcaccc agtcatagcc
      841 gcgcggcggc gggcgcaggc ggtagcggcc ggggtcctga atcaccgggc cgccctgcgg
      901 gaggtagccg ccacgcctgg gcgcattctg gtagccgctc ggcggctggc tgtagcgtgg
      961 gtcgtagcgg ggatcgacgc gctcggcctg atagccgttc cgcggatcgt atctggggtc
     1021 gttcctcgga tcgcttcggg gatcgttgcg cggatcggcg cgctcaatgc gctccccgcc
     1081 gcggggctcc tgcgcgccgc cgcgataggg ctgggcctgc tgctggcgcg cgcctccccc
     1141 acgagcagcc ggctgctcgc gccgctcgtc gcggtggtcc ttcgccatgg cgccgccggc
     1201 cgtagccaag ggggcggcta cgagcacgac agcggccagg gcggagatca ggcgtcgcat
     1261 ttcgccaatc atcctcaaaa acctgtcttc ggtcgacgct tacaatgtca cgcacgcctg
     1321 aactgcgcct gaacaagccc aaacaatcgc ggcctcgcaa ggcccagcct gcgaccggac
     1381 gacgcgcccc cgaagatgaa gcccggacaa cggcggtctt aaccatgtgt tcagcgcgga
     1441 cctgtttctc tggcctcgat aagagccgga cgaggtgttc cagaatggag ctccgccggc
     1501 cgtaacaggg acaaaggtca tgcttgcgca actgcaagtc gccaacgagg gtctcccgct
     1561 gccgagtgca gaagcgactg gcgacgaact tttccgtctt gggctactct attcgaccgg
     1621 ccagggcggc gcgcccctgg attatgtctc ggcccacatg ctgttcaatc tggccgccat
     1681 gcgcggttcg gtcgaagcca aggtctaccg caaggagctt tcggaagaga tggcttccga
     1741 tcaggtcgcc gaagcccagc gccaggcccg cgaatggctc gcccacggct gatgtcgggg
     1801 gcctgaagcg aggcgaactg gacgctcctc gcgccgcagt cgccccacct gagaggtttt
     1861 caacctgcgg gtgagcaggc ttgcaaaccc tgttacgtga gcgcgatctt cgccctcttg
     1921 gggctgtcgc ttgaggctgg cccccaaatg ggctggcgaa gatgaacctg aaaactggac
     1981 tattggccgc tgtggcgctt gtctccctgg ctggagtcgg cgccgctcag gccgggacgc
     2041 tgacgccaat cccgtcctac gttgacccgg cgggcggaac cacctccgtc ctcggcatca
     2101 acaacgccgg ttggatgacc gggaacatct ttgagcctga cggcacgagc ctgggctttg
     2161 tgcgcgacgc ggccggcgtc tacaccacct tttcggtgaa tggccttccc tcgacctttg
     2221 gccgtgcgat cgacaattcc aacaatgtca tcggctacgc gaccgacgcc tcgaacggct
     2281 ttccgaccga cacggaattc aagcgctcga ccggcggcgt ggtcaccgtg ctgcaaaatc
     2341 ccacgaccct ggccaacctg cacggcatcg cccagggcgt gaacgcctcc ggcgcgatcg
     2401 tcggcgacta tgagtccggc gccggcgcca cgccgccgct gctcggctac atcctcgatg
     2461 gcgcaagctt cacgtcgctc accgcgcccg gctcgacgcg aacctccgcg cgcgggatcg
     2521 aggacgacgg caccgtggcc ggctgggcgg tgatcggcgg aatcgagaac ggtttcatct
     2581 acag
//
LOCUS       DATAJL010000967         3363 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_125880,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000967 DATAJL010000000
VERSION     DATAJL010000967.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3363
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_125880"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1644
                     /locus_tag="VHN39_18265"
     CDS             <1..1644
                     /locus_tag="VHN39_18265"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEX2818343.1"
                     /translation="GAACPNPAFLREAQSAIADYDRADMFSGAVLVAANGKPVLRRGV
                     GLADRELGVAATPDMKFRIGSITKQFTATAILQLQEGGKLSIDDPISKYYPDAPAAWA
                     KVTLRHLLTHSSGIPTYTALPGFFGREARLPHTPEELVKLTRDKPLEFEPGSKFAYDN
                     SGYILLGYVVEKVSGQPYADYLRQHVFGPLRMTGSGYDQAGPIIPGRASGYERGPDGS
                     WRNAPFLDMSVPFAAGSLYSTVDNLLAWDQALYAARPLKPDSLKAMFSDYGHHYGFGF
                     VIDKKWDQDRIWHNGGVNGFTASFQRYPKSRITAVALANEETPSTDKLASDLAGLCLG
                     AKVYPRQVPEAPKVLAKYVGFYEVSPFAVAKVDVRGSGLVSHIAGQPDLPLYPEGGGK
                     FFARTADIELTFQAGADGQVSGVVIKQGGQQPLAKRIDAAEAERLAKAKAARMAAGVA
                     SPGTEEALRRVISGLQSGAPDYSRMSPALAEATRRQADGIKDALAQLGPLKSVTFQSV
                     GPGGADIYLVAFEKGSLEWRIMLGDNGQIVGLVFRRLAA"
     gene            1806..2666
                     /locus_tag="VHN39_18270"
     CDS             1806..2666
                     /locus_tag="VHN39_18270"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR00099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX2818344.1"
                     /translation="MPSPAGPPERTQPPRTAGLQLLISDIDGTLVTPDKILTAAAQAA
                     VQRLDEAGIGFSIISARPPRGMQALATALGVRLPFAAFNGGSLVGPDFQTISARWLPA
                     TVARSALALLAARQVDAWVFADDAWRLLNPNGAKVERERLALGFGPNVVSGFEDVVAR
                     IDKIVGVSDDHNHLAAVELEMQTKLGESANVSRSQPYYLDITPPGADKGHGVRAICER
                     AGVPLANTAVIGDMRNDVAMFRIAGLAIAMGQAPPDVQAAAQLTTAGNTEEGFAKAVN
                     RFILPMAKNG"
     gene            complement(2663..2785)
                     /locus_tag="VHN39_18275"
     CDS             complement(2663..2785)
                     /locus_tag="VHN39_18275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818345.1"
                     /translation="MAERLHGGDADVVFQRVDETPSVPARGIAQQTVLQDDERT"
     gene            complement(2867..>3363)
                     /locus_tag="VHN39_18280"
     CDS             complement(2867..>3363)
                     /locus_tag="VHN39_18280"
                     /inference="COORDINATES: protein motif:HMM:NF019225.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PEP-CTERM sorting domain-containing protein"
                     /protein_id="HEX2818346.1"
                     /translation="KYSFEVVGGHVGDIVPLLIATTISTISSAGGSATVQIGILTSQG
                     GVGRTFCASVLCSAANFSGTLAILAASGSVGTLGLNADVGGGIGPLASSADADPFIFV
                     DPSFANAGLYSIVVSEGVGNALPTTSPVPEPSSWLLLIGGFTGVAALRRGVRRRSRLV
                     STAA"
BASE COUNT          590 a         1121 c         1089 g          563 t
ORIGIN      
        1 ggagcggcct gccccaatcc ggcgttcctg cgcgaggctc agtccgccat cgcggactac
       61 gaccgggctg acatgttctc gggagccgtg ctggtggcgg cgaatggaaa gcctgtcctg
      121 cgtcgggggg tcggtctggc cgaccgtgaa ctcggcgtgg ccgcgacgcc ggacatgaag
      181 ttccgtatcg gctcgatcac caagcagttc accgccaccg cgatcctgca attgcaggag
      241 ggcggcaaac tgtcgatcga cgacccgatc tccaaatact atcccgacgc gcccgccgcc
      301 tgggccaaag tcactctgcg ccatcttctt acccacagct caggcattcc cacctacacg
      361 gccctgcccg ggtttttcgg ccgagaggcg cggctgcctc acacgcctga ggagctggtt
      421 aaactcactc gcgacaagcc gctcgaattc gagccgggca gcaagttcgc ctacgataat
      481 tccggctaca tcctgctggg ctatgtggtc gaaaaggtct ccggccagcc ctacgccgac
      541 tatctgaggc aacacgtctt cgggccgctc cgcatgacgg ggtcaggcta tgatcaggca
      601 gggccgatca tcccgggtcg tgcgtccggc tatgagcgtg gcccggacgg gagctggcgc
      661 aacgcaccct tcctcgacat gagcgtgccc ttcgccgctg ggtccctcta ctcaacggtg
      721 gacaacctcc tggcctggga ccaggcgctc tatgcggcgc gtccgctgaa gccggactcg
      781 ctgaaggcca tgttcagcga ctatggccac cactacggtt tcggcttcgt gatcgacaag
      841 aaatgggacc aggatcgcat ctggcacaat ggcggcgtca acggcttcac ggcttctttc
      901 cagcgctatc cgaagtcacg catcacggcc gtagcgctcg ccaacgagga gacgccgagc
      961 accgacaaac tggcctccga tctcgcgggt ctttgcctcg gcgcgaaggt ctatccgcga
     1021 caagttccgg aggcgccgaa agttctcgcg aagtacgtcg gtttctacga agtctcgccc
     1081 ttcgcggtgg ccaaggtgga cgtccgcggg tccggcctgg tctcgcacat cgccggccag
     1141 ccggacctgc cgctctatcc cgaaggcggc ggcaaatttt tcgccaggac cgccgatatt
     1201 gagttgacct tccaagccgg cgcggacggc caggtcagcg gcgtcgtcat caagcaaggc
     1261 ggtcagcaac cgctcgccaa gcgaattgac gcggctgagg ccgagcggct ggccaaggcc
     1321 aaggccgctc gcatggcggc aggcgtcgcc tcgcccggca cggaggaggc tttgcgccgc
     1381 gtcataagcg gattgcagag cggcgcaccc gactacagcc ggatgagccc ggccctggcc
     1441 gaggccacgc gccggcaagc cgacgggatc aaggacgccc tggcccagct tggcccgctg
     1501 aagtcggtga ccttccagtc ggtcggcccg ggcggagcgg acatctatct tgtggccttt
     1561 gaaaaaggct cgctcgagtg gcggataatg ctcggcgaca acggccagat cgttggcctc
     1621 gtgttcagac ggctagccgc ctagccttgg tccgctttcg acccaaagcg ggcatgcggg
     1681 gggtccgttt tcgggcgcga aggctgatcg gccggctcga ttgagcaccc gcgagccgca
     1741 agtcggcgtg accttggtcg gcgccgcgcg ttccgggtct gcagccctgt cgaggtccat
     1801 cccatatgcc gagtcccgca gggcctcctg aacgcaccca gccgccgcgg accgcgggcc
     1861 tccagctgct gatctcggac atcgacggga cattggtcac gccggacaag atcctgacgg
     1921 cggcggcgca ggcggcggtt cagcgtctcg acgaggcggg tatcggcttt tcgatcatct
     1981 ccgcccggcc gccacgcggc atgcaggcgc tcgccaccgc gctaggagtc cgcctgccgt
     2041 tcgcggcgtt caacggcggc agtcttgtag ggcctgactt tcaaacgatc tcggcgcgct
     2101 ggctgccggc caccgtggcg cgaagcgctc ttgcgctgct tgcggcgcga caggtcgacg
     2161 cctgggtctt cgcggacgac gcctggcgcc tgctgaatcc aaacggcgcg aaggtcgaac
     2221 gtgagcggct tgcgttgggg ttcggcccta acgtcgtcag cggcttcgag gacgtggtcg
     2281 cgcgcatcga taagatcgtt ggggtctccg acgaccataa ccatctggcg gcggtcgaac
     2341 tcgaaatgca gacgaagctc ggcgaaagcg ccaacgtgtc acgctcccag ccctactacc
     2401 tcgacatcac cccacccggc gccgacaagg gccatggcgt tcgcgccatc tgcgagcgcg
     2461 ccggcgtgcc tctcgccaac accgccgtga tcggcgacat gcgcaacgac gtggcgatgt
     2521 tccggatcgc gggcctcgcc atcgccatgg gccaggcgcc gcccgacgtg caggccgccg
     2581 cccaactgac gaccgccggc aacacggagg aagggttcgc caaggccgtg aaccgcttca
     2641 tcctgccgat ggcgaagaac ggttaggtcc gctcgtcgtc ctgcagcacg gtctgttggg
     2701 cgatgccgcg agctggaacc gatggggttt cgtcgacgcg ctgaaagaca acgtctgcgt
     2761 cgccgccgtg gagtctctcg gccatggacg gagcgacaag cccctcatcg catcacgata
     2821 cggccaggtg gcgagatcac gtgacctcat cgcggtgatc gacagtctag gcagccgttg
     2881 agacgagccg tgaccggcgc ctcacgccgc ggcgcaacgc tgcaacgcct gtgaaacccc
     2941 cgatgagcag cagccagctc gagggttcag gtacggggct tgtggttgga agggcattcc
     3001 cgacgccctc actcaccacg atgctataca ggcctgcatt ggcgaagctg gggtcgacga
     3061 agatgaaggg gtcggcgtct gctgatgacg ccaaggggcc aattccaccc cctacgtcgg
     3121 cgttcaaccc tagtgttccg accgacccgg aggctgcgag gatggcgagc gtcccggaga
     3181 aattcgcggc gctgcaaagg acgctggcgc aaaatgtgcg gccgacgcct ccctgagacg
     3241 tgaggatgcc gatttggaca gtcgccgatc caccggctga ggatatcgtc gagatcgtgg
     3301 tcgcaatcag cagcggcacg atgtcaccga catgtccgcc gacgacctcg aaggaatatt
     3361 tca
//
LOCUS       DATAJL010000968         4052 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_126034,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000968 DATAJL010000000
VERSION     DATAJL010000968.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126034"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VHN39_18285"
     CDS             complement(<1..396)
                     /locus_tag="VHN39_18285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818347.1"
                     /translation="MPDEFGLSLLAADVRDDLSRFHLLHYADRVDGFLISGHNSGTHW
                     LRFMLSTAIAHRLELPRPAYSSGPQSDVYIGHARHRRPFPQAPRIGSSHHMPSRLVAL
                     LGAVGLVRLPPVVLLVRHIPDSLISYFFKW"
     gene            complement(534..1196)
                     /locus_tag="VHN39_18290"
     CDS             complement(534..1196)
                     /locus_tag="VHN39_18290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016657 - obsolete oxidoreductase
                     activity, acting on NAD(P)H, nitrogenous group as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HEX2818348.1"
                     /translation="MDVSEAVARRISIRAFRPDPVPGAVVADILVRAAQAPSGGNLQP
                     WRVYGLAGAPLAEFKALAAANPFGEAPEYEVYPPNLWEPFRTRRFQNGEDLYATIGLP
                     REDKPARLRQLARNGDFFGAPVGLFFCLDRKLGPPQWADLGMFMQTVMLLAVERGLDT
                     CPQEYWARYPKTVAGFLGLPDDHMLFAGMALGYRDAEHPINRLQAARDGFEVWGELRG
                     FD"
     gene            1316..1999
                     /gene="mtgA"
                     /locus_tag="VHN39_18295"
     CDS             1316..1999
                     /gene="mtgA"
                     /locus_tag="VHN39_18295"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009274 - peptidoglycan-based cell wall
                     [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HEX2818349.1"
                     /translation="MIGRLFRWAVIAVLVFGFAGPILVVAIYRFVPPPMTWLMVQRMF
                     EGHGFDRRWVPLRRISPQLVRSVIGAEDAKFCQHHGFDFNAIQKAMAHNEDRPGKIRG
                     GSTISQQTAKNVFLWPHRDWARKGLETWFTVLIEGIWGKPRIMEVYLNSIEWGPGVYG
                     AEAAAQANFHMSAAQLSPAQAARLAAIIPKPLAWKAARPGPYIQKRGGHIAAAAGTVR
                     RDGLADCVL"
     gene            complement(2385..3041)
                     /locus_tag="VHN39_18300"
     CDS             complement(2385..3041)
                     /locus_tag="VHN39_18300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase family protein"
                     /protein_id="HEX2818350.1"
                     /translation="MVAGAPAARLVLAAAVVAGVSYLAADHLALSPAVSLAWKGAGVG
                     LLAVYAALSARRADGWLICAVMAAGAAGDVLLGAAGFVVGGAAFLVGHLVAIVLYQRN
                     RRPGLGWPAWFGAAGLIAGTVAAAFLLPADRSGAPGAAVYAAGLSCMAASAGLSRFPR
                     GVAAGALMFLASDLLIFARAGPLAGVAWVGFAVWSLYFAGQALVCTGVVRTLAREPAQ
                     "
     gene            3187..>4052
                     /locus_tag="VHN39_18305"
     CDS             3187..>4052
                     /locus_tag="VHN39_18305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEX2818351.1"
                     /translation="MRVGVPREIKPDEYRVGLTPTAVREYVSHGHEVIVETTAGQGAG
                     YSDEAYQKAGAKIAPDAAAVFVGAELIVKVKEPQPVEWARLTDKHILFTYLHLAPDPA
                     QADGLLASGCAAIAYETVTDAQGGLPLLAPMSEVAGRLAVFSAGETLLKHNGGMGLLL
                     SGVPGVPPARIVVLGGGVVGMNAARMAAGLGAEVVIVERSIPRMRELDNMFQGRILTR
                     YSTQAAVEEEILKADVVVGAVLTAGASAPKMITRADLKKMKPGSVLVDVSIDQGGCFE
                     TSRPTTHADPTYT"
BASE COUNT          688 a         1470 c         1334 g          560 t
ORIGIN      
        1 ccacttgaag aaataggaga tcagagaatc agggatgtgc cgcaccagca gcaccaccgg
       61 cggcagccgc acgaggccca cggcgcccag caaggccacc aggcgcgagg gcatgtggtg
      121 ggagctgccg atcctgggcg cctggggaaa cggccgccgg tgtcgggcgt ggccgatgta
      181 gacgtcgctc tgcgggccgc tggaataggc cgggcgcggc aactcaaggc ggtgggcgat
      241 cgccgtgctc agcatgaacc tgagccagtg ggtgccggag ttgtgcccgc tgatcaggaa
      301 cccgtcgacg cggtcggcgt agtgcaggag gtgaaagcgg gaaagatcgt cacggacgtc
      361 ggcagccagc agcgaaagac cgaactcgtc tggcatcgca acccaagccc caacttgacc
      421 acagtcagac ttgaactgat ttttatgccg cccttataac gaattcatat cttcgcatct
      481 ctgagttgta accaaacctg tgccagtttg tcgcaactga aacagaagcc gcctcagtcg
      541 aacccgcgca gctcgcccca gacctcgaac ccgtcgcggg cggcctgcag gcggttgatc
      601 gggtgctcgg cgtcgcggta gccgagcgcc atgccggcga acagcatgtg gtcgtcgggc
      661 aaccccagga agccggccac ggtcttcggg tagcgcgccc agtattcctg cgggcatgtg
      721 tccagcccgc gctcgacggc cagcagcatc accgtttgca tgaacatgcc caggtccgcc
      781 cactgcggcg ggccgagctt gcggtccagg cagaagaaga ggccgaccgg cgcgccaaag
      841 aagtcaccgt tcctggcgag ctggcgcagg cgcgcgggct tgtcctcccg cggcaggccg
      901 atcgtggcgt agaggtcctc gccgttctgg aagcgccgcg tgcggaacgg ctcccacagg
      961 ttcggcggat agacctcgta ctccggcgct tccccgaacg gattggccgc cgccagcgcc
     1021 ttgaactcgg ccagcggcgc gccggctagg ccatagaccc gccagggctg cagattcccg
     1081 cccgaaggcg cctgggccgc gcgaaccagg atgtcggcca ccaccgcgcc cggcacggga
     1141 tcgggccgga aggcgcggat cgagatgcgc cgcgcgacgg cttcagagac atccatcgga
     1201 cgagcgctcc ggcttgacgc gcccgcgcgg cgcagcccag ctatccacca cgccctaagg
     1261 tcaaggcaag gacggccgcg tggccaacag accgagagct ccaaagcgcc gtggcctgat
     1321 cggacgcctg ttccgctggg cggtgatcgc ggtgctggtg ttcgggttcg cggggcccat
     1381 cctggtggtg gcgatctacc gcttcgtgcc gccgccgatg acctggctga tggtccagcg
     1441 gatgttcgag ggtcacggct tcgaccgccg ctgggtcccg ctgcgccgca tctcgcctca
     1501 gctggtccgc agcgtcatcg gcgccgagga cgccaagttc tgccagcacc acggcttcga
     1561 cttcaacgcc atccagaagg ccatggccca caacgaagac aggcccggca agatccgcgg
     1621 cggctcgacg atcagccagc agaccgccaa gaacgtcttc ctgtggccgc accgcgactg
     1681 ggcccgcaag ggcctggaga cctggttcac cgtcctgatc gaggggatct ggggcaaacc
     1741 ccggatcatg gaggtctatc tgaactccat cgagtggggc ccgggcgtct atggggccga
     1801 ggccgccgcc caggccaatt tccacatgag cgccgcccag ctcagtcccg cccaggccgc
     1861 gcgcctggcc gcgatcatcc ccaagccgct ggcctggaag gccgccaggc ccggccccta
     1921 catccagaag cgcggcggcc acatcgccgc cgccgccggg accgtccgcc gcgacggcct
     1981 ggccgactgc gtgctctagc gacgcccgac ctgccctagt gtcccgattc cgaagttcgc
     2041 atgcgctggc ggccagcgcc ggacgaactt cggaatcgat caggacactc ggaagtctat
     2101 gttttcctag tgtgcttctt ggatttgaag ttcgctcggc gtctggtcct gaatgaggcg
     2161 aacttcaaat ccagcacact agacagccga tctcccacca gtgggctggc gccgtcagtg
     2221 catcggctcc cccgcagggc gagcccctgt ccgagactgg cacgatcggc cgacgtacag
     2281 ccgtcgccgc gaccgcctga agtctagtac cgagctctcc aggctcacta gcgtaccagc
     2341 gccgtcgggt ccccgcccgg cggcgttgtc tttttttggg ccgcctattg ggccggttcg
     2401 cgcgccagag tccgcaccac accggtgcag accagcgcct gcccggcgaa gtagaggctc
     2461 cagaccgcga acccgaccca ggcgacgccc gccagcggcc cggcgcgggc gaagatcaag
     2521 aggtccgagg ccaggaacat cagcgcgccg gccgccacgc cgcggggaaa ccggctgagc
     2581 ccggcgctgg ccgccatgca ggagagtccc gccgcataga ccgccgcccc cggcgctccg
     2641 gaccggtcgg cgggcagcag aaaggccgcg gcgacagtcc cggcgatcag gcccgccgcg
     2701 ccaaaccagg ccggccagcc caggcctggg cggcgattgc gttgatagag gacgatggcg
     2761 accaggtgcc ccaccaggaa cgccgccccg ccgaccacga agccggccgc gcccagcagc
     2821 acgtcgccgg ccgcgcccgc cgccatgacg gcgcagatca gccagccgtc ggcgcgcctc
     2881 gccgacagcg ccgcatagac ggccaacagg ccgacgcccg cgcccttcca ggccaggctc
     2941 accgctggcg acagcgccag atggtcggcc gccagatagc tcacgcccgc gacgaccgcc
     3001 gccgccagga ccagccttgc cgctggcgcg cccgccacca tcgcttcgcc tcccgattcc
     3061 ctctggtcag cctagggcgg cgaaggcccg cgcgccacgc gctggccgca gtctccggtt
     3121 gacgaaagaa cctcctgccc tcaaaccctc gcccacctgc aaaaaccacc cctgacggag
     3181 gctttcatgc gcgttggcgt gccccgcgag atcaagcccg acgaataccg tgtcggcctc
     3241 acccccaccg ccgtgcgcga gtacgtcagc cacggccacg aggtgatcgt cgagacgacc
     3301 gccggccagg gcgcgggcta ttcggacgag gcctatcaaa aggccggcgc gaagatcgcg
     3361 cccgacgccg cggcggtgtt cgtcggcgcc gagctgatcg tgaaggtcaa ggagccgcag
     3421 cccgtcgaat gggcccggct cactgacaag cacatcctct tcacctacct gcacctggcc
     3481 cccgacccgg cccaggccga cggcctcctg gcctccggtt gcgcggccat cgcctatgag
     3541 acggtgaccg acgcccaggg cgggctccct cttctggctc caatgtccga ggtcgcgggc
     3601 cgcctcgccg tcttctcggc gggcgagacg ctgctgaagc acaacggcgg catgggcctg
     3661 ctgctctccg gcgtgcccgg cgtgccgccg gcgcggatcg tcgtgctggg cggcggcgtg
     3721 gtcgggatga acgccgcgcg catggccgcc ggcctcggcg ccgaggtggt gatcgtcgag
     3781 cgctcgatcc cgcggatgcg tgagctcgac aacatgttcc agggccgcat cctgacccgc
     3841 tattcgaccc aggccgccgt cgaagaagaa atcctcaagg ccgacgtggt ggtgggcgcg
     3901 gtgctgacag ccggcgcctc ggcgcccaag atgatcacgc gcgcggacct caagaaaatg
     3961 aagcccggct cggtgctggt ggacgtctcc atcgaccagg gtggttgctt cgagacgagc
     4021 cgacccacga cccacgccga cccgacctac ac
//
LOCUS       DATAJL010000969         2133 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112110,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000969 DATAJL010000000
VERSION     DATAJL010000969.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112110"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /locus_tag="VHN39_18310"
     CDS             <1..693
                     /locus_tag="VHN39_18310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818352.1"
                     /translation="AASAATLAHAGMRADGPPLRAPAKLDCPADTGDLTRTAQSPDGQ
                     WCDYAGRGGETVRLRLAPLNGQTPSEALAPTRAQLHALAPVYREAIPVGYGDGPGDSA
                     DVNVPFVRVHADGDRADVRLFGIFHIVGHDHEADVDRDHGRKHTVVHAGLRGAEVIAD
                     EVGRSNASLVYVLAGSHRYASGYRAVGYIAKGPVTGPLVVAEFRSPVNSHRDNDGGHD
                     DIDRLIDHNLDR"
     gene            753..>2133
                     /locus_tag="VHN39_18315"
     CDS             753..>2133
                     /locus_tag="VHN39_18315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010920483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEX2818353.1"
                     /translation="MRAPILALKDVRLADGPLMLFDGVDLALDARVRACLVGRNGAGK
                     STLLRILAGQIEPDGGERNLATGTRIAFVPQEPEIVGATLLDYATAGGAQDYQAQATL
                     TDFGLDPEKSAQGLSGGEIRRAALARAFAEDADVILLDEPTNHLDILAIETLEEELAA
                     SRSAALIVSHDRAFLERVTKRCFWLEYRLVKRLDEGFAGFEDWAEKITAQELEEARRL
                     DRFIQREQHWMARGVTARRARNEGRKRRLESLRQDKADRLKDTRKELNMGLASSGVSG
                     KRVVEAKGVCKAFGDRVLLKNFSTRILRGDRVAVVGPNGAGKTTLVKLLLGEIPADAG
                     EVKLGTNLQISYIDQARATLAPEMTLRDVLLPKGGDQILVRGEPRHIVSYAKDFLFSE
                     AQLRQPVRSLSGGERNRLLLAKALAAPSNMLVLDEPTNDLDIETLDLLQELLADYAGT
                     IVLVSHDRDF"
BASE COUNT          331 a          777 c          729 g          296 t
ORIGIN      
        1 gcggcgtccg ccgcgacgct cgcccacgcc ggcatgcgcg ccgacggccc gccgctgcgc
       61 gcgccggcga agctggattg tcccgccgat acaggcgacc tcacccggac cgcacaatcg
      121 cccgacggcc agtggtgcga ctacgccggc cgcggcggcg agaccgtgcg gttgcggctg
      181 gcgcccctga acggccagac gccgtcggag gctttggcgc cgacccgggc ccaactgcac
      241 gccctggcgc cggtctaccg cgaggcgatc ccggtcggct acggcgacgg gccgggcgac
      301 agcgccgacg tcaacgtgcc gttcgtccgc gtccacgcgg acggcgaccg ggccgacgtg
      361 cggctgttcg gcattttcca tatcgtcggc cacgaccacg aggccgacgt cgacagggat
      421 cacgggcgca agcacacggt ggtgcacgcg ggcctgcgcg gcgccgaggt gatcgccgac
      481 gaggtcgggc gcagcaacgc ctcgctggtc tatgtgctgg ccggcagtca tcggtacgcg
      541 tcgggctatc gggccgtcgg ctacatcgcc aagggcccgg taaccggccc gctggtggtg
      601 gccgagttcc gcagcccggt gaacagccac cgggacaatg acggcggtca cgacgacatc
      661 gaccgcctga tcgaccacaa cctggatcgc taaggcttcc gaagccggcc cgcccttgcg
      721 ctcttcgccc ggcgctatat gtccggcccc cgatgcgcgc gcccatcctc gccctgaagg
      781 acgtccgcct ggcggacggt ccgctgatgc tgttcgacgg cgtcgacctg gcgctcgacg
      841 cccgggtccg cgcctgcttg gtcggccgca atggggcggg caagtcgacg ctgctgcgaa
      901 tcctcgccgg tcagatcgag ccggacggcg gcgagcgcaa cctcgccacc gggacccgca
      961 tcgccttcgt gccgcaggag ccggagatcg tgggcgcgac cctgctggac tatgccaccg
     1021 ccggcggcgc gcaggactat caggcccagg ccacgctcac cgacttcggc ctcgatccgg
     1081 aaaagtccgc ccagggcctc tccggcggcg agattcgccg cgcggcgttg gcccgggcct
     1141 tcgccgagga cgccgacgtc atcctgctgg acgagcccac caaccacctg gacatcctgg
     1201 ccatcgagac gctcgaggag gaactggccg cctcccggtc cgccgccctg atcgtcagcc
     1261 atgaccgcgc cttcctggag cgggtcacca agcgctgctt ctggctggag taccgcctgg
     1321 tcaaacgcct cgacgaaggc ttcgccggct tcgaggactg ggctgagaag atcaccgccc
     1381 aggagctgga ggaggcccgg cgcctcgacc gcttcatcca gcgcgagcag cactggatgg
     1441 cccgaggcgt cacggcgcga cgggcccgca acgaaggccg caagcgccgc ctggagagcc
     1501 tgcgccagga caaggccgac cggctgaagg acacccgcaa ggagctcaac atggggctcg
     1561 ccagctccgg ggtttccggc aagcgggtgg tcgaggccaa gggggtctgc aaggcgttcg
     1621 gcgaccgcgt cctgctgaag aacttctcca cccgcatcct gcgcggcgac cgggtggcgg
     1681 tggtgggacc caatggcgcg ggcaagacga cgctggtgaa gctgctgctg ggcgagatcc
     1741 ccgccgacgc cggcgaggtg aagctcggga ccaacctgca gatcagctac atcgatcagg
     1801 cccgcgccac cctggcgccg gagatgacgc tccgcgacgt cctgctgccc aagggcggcg
     1861 atcagatcct ggtccgcggc gaaccccgcc acatcgtctc ctacgctaag gatttcctgt
     1921 tcagcgaggc gcagctgcgc cagcctgtcc gcagcctgtc gggcggcgag cgcaaccgcc
     1981 tgctgctggc caaggcgctg gccgcgccct ccaacatgct ggtgctcgac gagccgacca
     2041 acgatctcga catcgagacg ctcgatctgt tgcaggaatt gcttgccgat tatgccggca
     2101 cgatcgtgct cgtcagtcac gaccgcgatt ttc
//
LOCUS       DATAJL010000970         1672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_126285,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000970 DATAJL010000000
VERSION     DATAJL010000970.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126285"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            16..864
                     /locus_tag="VHN39_18320"
     CDS             16..864
                     /locus_tag="VHN39_18320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003169219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2818354.1"
                     /translation="MQTVTANGAEIPAIGFGTYGMSGGELILTLSAALSAGVRHIDTA
                     QIYRNEAEVGAAVADSYTAREDVFLTTKVWVANYAPGAFEASLDESLRKLRTDYVDLL
                     LLHWPSSAAPLEAQIAGLNAAVASGKARHIGVSNFNRELLARAVRLSETPIATNQVEY
                     HPYLNQALLLAECRRLGVSLTAYCGMAVGRVFDDPVLKTLAVRHGVSVAQIVLRWLIQ
                     QPGVAALSRTSQPARIPANLDVFGFVLDREEMAAIHRLAAADSRIVNPAGLAPAWDPT
                     PALTAA"
     gene            1049..>1672
                     /locus_tag="VHN39_18325"
     CDS             1049..>1672
                     /locus_tag="VHN39_18325"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2818355.1"
                     /translation="MQTTAAERGTPDVVTTHPLDPEDAAITAAMRTMLSAVKGKSGGP
                     VGAARGQFDGLMEGVQPREDVTSEAGVLGGVPGVWVNPANAQPDLAILHLHGGWFNFG
                     SAKPYRHLVGHIAARAGAKAFIPDYRLAPEHPFPAAVDDALACYRDLAGSGVRRLALT
                     GDSAGGALALGLALHVTRDTASSGAALVGVAVLSPVTDLTLSGETYQS"
BASE COUNT          247 a          637 c          539 g          249 t
ORIGIN      
        1 ctgtgagacc ctcccatgca gactgtcacc gccaacggcg ccgagattcc cgcgatcggc
       61 ttcggcacct acggcatgag cggcggcgag ttgatcctca cgctgagcgc agccctgagc
      121 gccggtgtcc ggcacatcga caccgcccag atttatcgta acgaggccga ggttggcgcg
      181 gccgtggcag actcctacac ggcgcgcgaa gacgtcttcc tgaccaccaa ggtctgggtc
      241 gccaactatg cgcccggcgc cttcgaggcc tctctcgacg agagcctgcg gaagctgcgc
      301 accgactacg tcgacctgct tctgctgcac tggccctcgt cggcggctcc gctggaagcc
      361 cagatcgccg gcctgaacgc cgccgtggcc tcgggcaagg cgcgccacat cggggtcagc
      421 aacttcaacc gcgagctcct ggcccgggcg gtccgcctct ccgagacgcc gatcgccacc
      481 aaccaggtcg agtaccaccc ctacctgaac caggccctgc tcctcgcgga atgccgccgc
      541 cttggggtgt cgctgaccgc ctactgcggc atggccgtcg gccgcgtgtt cgacgacccg
      601 gtgctgaaga ccctggccgt ccgtcacggc gtatccgtgg cccagatcgt cctgcgctgg
      661 ctgatccaac agccgggcgt ggcggccctg tcccgcacca gccaaccggc gcggatcccg
      721 gccaacctcg acgtcttcgg cttcgtgctt gaccgggagg agatggctgc gatccaccgc
      781 ctcgcggccg ccgacagccg gatcgtcaac cccgcgggcc tggcgcccgc ctgggacccg
      841 acgcccgccc tgacggccgc ttagccgccg gcatttgcgt ctgaatccga cccggttcgc
      901 cgcattcgta ccagaggcgg cccgtggaaa cgtcgaggat caggaggttc tggttcccgc
      961 gcgccgaggg acccgcacct ggcgggcgca ggacggttcc ggccgcctca agcgcctcgc
     1021 ctcggagatc aagaggaagg accacgccat gcaaaccacg gccgcggaac gcgggacgcc
     1081 cgatgtcgtc acgacccatc cgctcgatcc cgaggatgcg gcgatcaccg ccgccatgcg
     1141 aaccatgctc agcgctgtga agggcaagtc cggcggtccc gtcggcgcgg cccgcggaca
     1201 gttcgatgga ctcatggaag gcgttcagcc gcgcgaggac gtgacctccg aagcgggcgt
     1261 cctcggcggt gtccccggcg tctgggtgaa tcccgccaac gcccagccgg acctggcgat
     1321 cctccatctg cacggcggct ggttcaactt cggatccgcc aagccctacc gccatctcgt
     1381 cgggcacatc gccgcgcgag cgggcgccaa ggcgttcatc ccggactacc ggcttgcccc
     1441 ggagcacccc ttcccggccg ccgtggacga tgcgctggcc tgctatcgcg acctggccgg
     1501 gagcggcgtc cgacggttgg ccctgacggg cgattccgcc ggtggcgccc tggccctcgg
     1561 actcgcattg cacgtcaccc gggacacggc gtccagcgga gccgccctgg tcggcgtcgc
     1621 cgtgctgtcg ccggtgaccg acctgaccct ctccggcgag acctaccagt cc
//
LOCUS       DATAJL010000971         1853 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112203,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000971 DATAJL010000000
VERSION     DATAJL010000971.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112203"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /gene="rpsR"
                     /locus_tag="VHN39_18330"
     CDS             complement(<1..279)
                     /gene="rpsR"
                     /locus_tag="VHN39_18330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEX2818356.1"
                     /translation="MTDATIIDDAPAAGGAAGGARRPFFRRRKVCPFSGAGAPKIDYK
                     DVKLLQRYVSERGKIVPSRITAVSAKKQRELAKAIKRARFLALLPYVVK"
     gene            complement(279..653)
                     /gene="rpsF"
                     /locus_tag="VHN39_18335"
     CDS             complement(279..653)
                     /gene="rpsF"
                     /locus_tag="VHN39_18335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEX2818357.1"
                     /translation="MALYEHVVISRQDISPQQAEALNDTMKSLIEAGGGTVAKIEYWG
                     LRNLTYRIKKNRKGHYSLLAIDSPSDAVKEMERQLSINEDVLRYLTVRVDELELELSP
                     ILARRDRDRERRDDFPAKEGAF"
     gene            complement(868..1425)
                     /locus_tag="VHN39_18340"
     CDS             complement(868..1425)
                     /locus_tag="VHN39_18340"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEX2818358.1"
                     /translation="MKTLITTAAAIAVGGATLAAALATSAFAELKAGAKAPDFTAPAF
                     LAGQPFTYKLADALKKGPVVVYFFPAAHTSGCNLEAHLFSDAIDQFKAAHATVIGVTA
                     GKVDELAAFSTETEHCGGKFPVAADPGAKIAKQYDSILAAKPDWSSRTSYVIAQNGDI
                     VHVYSNLNPNDHVTETLNAVKAMQK"
     gene            complement(1500..>1853)
                     /locus_tag="VHN39_18345"
     CDS             complement(1500..>1853)
                     /locus_tag="VHN39_18345"
                     /inference="COORDINATES: protein motif:HMM:NF025710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4402 domain-containing protein"
                     /protein_id="HEX2818359.1"
                     /translation="VKPLAGNGTVTIDPTSGARTFNGAQGLDTPTPTRASFNVTGEGG
                     QTFSVTVPATFDMTGPQTMTVTTSSSVAGTAMLSSTLGSSGSLTIGVGGSAPINASTL
                     NGDYSGSFIVTVAYN"
BASE COUNT          294 a          532 c          668 g          359 t
ORIGIN      
        1 cttcacaacg taggggagaa gggccaggaa gcgcgcgcgc ttgatcgcct tggcgagctc
       61 acgttgcttc ttggccgaca ccgcggtgat ccgcgacggc acgatcttgc cgcgctcgga
      121 gacgtagcgc tgcaggagct tgacgtcctt gtagtcgatc ttcggcgcgc cggcgcccga
      181 gaacgggcag accttgcggc ggcggaagaa gggacggcgg gcgccgcctg cggcgccgcc
      241 agcggcgggg gcgtcgtcga tgatggtggc gtcggtcatc agaaggctcc ttccttggcc
      301 gggaagtcat cgcggcgttc gcggtcgcga tcgcggcggg cgaggatcgg ggagagctcc
      361 agctccagtt cgtcgacgcg cacggtcaga taccgcagga cgtcttcgtt gatggacagc
      421 tgacgttcca tctccttcac cgcgtcggag gggctgtcga tggccagcag ggagtagtga
      481 cccttgcggt tcttcttgat gcggtaggtc aggttgcgaa gaccccagta ctcgatcttg
      541 gcgacggttc caccgccggc ctcgatgagc gatttcatgg tgtcgttgag ggcttcagcc
      601 tgttgcggcg agatatcctg ccgcgaaatg acgacgtgct cgtagagcgc catagtttcc
      661 ttcttccatt taagagggcg gcgcgtccgg cggcggaagg cccgctggac gtgatggatc
      721 tctggcgcgg cggtcgggat ggtcccgacc cattggtgtt ccgcgagaga ccgctctccg
      781 tgaagaggcg ggctgataag tgaaaaaggc cgcggaagca agcgattgca ggcttccgca
      841 gccctttagg cctttgtctg gctcagccta cttctgcatc gccttcacgg cgttcagcgt
      901 ctcggtgacg tgatcgttgg ggttcaggtt cgagtagacg tgaacgatgt cgccattctg
      961 ggcgatcacg taggaggtgc ggctggacca gtcgggcttg gcggccagga tcgagtcata
     1021 ctgcttggcg atcttggcgc cggggtccgc ggccaccggg aacttgccgc cgcaatgttc
     1081 ggtctccgtc gagaaagccg ccagttcatc gaccttgccg gcggtgacgc cgatgaccgt
     1141 cgcatgcgcg gccttgaact ggtcaatggc gtcggagaac aggtgggctt ccagattgca
     1201 gcctgaggtg tgggcggcgg ggaagaaata gaccaccacc gggcccttct tcagcgcgtc
     1261 ggcgagcttg taggtgaagg gctgcccggc gaggaatgcc ggcgcggtga aatcgggagc
     1321 cttggcgccg gccttgagct cggcgaaggc cgatgtggcc agggcggcgg cgagcgtggc
     1381 ccccccaacg gcgattgcgg cggcggtggt gatcagcgtc ttcatattgg ttctcccctc
     1441 ggaatttcgg gcgttctaca ccggcgctga cagattgtcg cggcctaggt tacctagggt
     1501 cagttatagg cgacggtgac gatgaagctg ccgctatagt cgccattgag cgtcgaggcg
     1561 ttgattggcg ctgagccgcc cacgccaatg gtgaggctgc ctgacgaccc aagggtcgaa
     1621 ctgagcatcg cggtgccggc gactgagctc gaagtggtga cagtcatcgt ctgcggtccg
     1681 gtcatgtcaa acgtcgccgg cacggtcacg gaaaaggtct gaccgccctc gccggtgacg
     1741 ttgaaactgg cgcgcgtcgg ggtgggcgtg tccaggccct gggcgccgtt gaacgtgcgc
     1801 gcgcccgagg tcggatcgat ggtcaccgtg ccgttgccgg ccaggggctt gac
//
LOCUS       DATAJL010000972         6075 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112242,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000972 DATAJL010000000
VERSION     DATAJL010000972.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6075
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112242"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1638)
                     /locus_tag="VHN39_18350"
     CDS             complement(<1..1638)
                     /locus_tag="VHN39_18350"
                     /inference="COORDINATES: protein motif:HMM:TIGR00229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818360.1"
                     /translation="MEDPPLLKLLDHRFDSLAVETHVNLGPRAAVAVGAGCVSLMLLP
                     WRVCLVWTVIGLSVEAWSWSASRRQFLGRPITRTLQVNYLATLVALIGNWFILALMLW
                     RTGGLEGSLCALVIWLSVMGFAQTFASRSPIGFTVCGVFPTFGMLAVVQLAPNDGGVG
                     RWSILGFMMLAIAFAIAGARQTFAAGRKFDESQEQLHDSEFQYRVLADNISDIVGRTA
                     LSGEWRYISPSIEVALGYTADEFRKFEHFSYVHPEDRPKVEARLEKLLADGGDCTFEY
                     RLFRKDGALSWLETSFTLINDPRTGEPVELVSMSRDINHRKALEQDLVEALKHAEAAV
                     VAKSDFLANITHELRTPLNAIVGFSGLLRTSAALSEKDSRQAKLINEASSTLLVVVNS
                     VLDFSKLESGAFALDPQPFDPAQVVNSVASLVEDQARQRGLAMTVVIAGELHRLEGDA
                     PRLQQVVLNLLSNALKFTREGGVEVRVEDKPGAEAGRRLCVSVSDTGVGVADDQLAAI
                     FERFNQADPSVSRTFGGTGLGLAISKQIVELMGGEIGV"
     gene            1829..3595
                     /locus_tag="VHN39_18355"
     CDS             1829..3595
                     /locus_tag="VHN39_18355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate-forming enzyme family protein"
                     /protein_id="HEX2818361.1"
                     /translation="MSDASTSSPAWPVMSVAEAHARLTAPGERFEIAEMPIRGIMTRV
                     WKNAPPTLRDVFLNSRAFPDREFLVYDADRATYEGFARATLTLAKQLQADGVRKGDRV
                     AVIMRNLPEWPVAFFAGILAGAIVTPLNAWWTGPELEYGLADSGSKIAIVDDERLGRV
                     EDYLDTLGDLKRVYVSRMTEASSHPKIARLEDVIGPVNGWDALPDLPLPDVEMGPEDD
                     ATILYTSGTTGKPKGALGTHRNMTSNIGAGGISATRNFLRAGQPLPESDPHKLPQRVT
                     LLVVPFFHATGLSATLAPTMNAGGRIVLMRRWDAEPAMRLIEREKVSSTGGVPTIAWQ
                     LIEHPARTKYDLSSLVAVTYGGAPSAPELVRRIGETFPGSQPGNGWGMTETTATFTSH
                     LGKDYENRPDSAGPAAPVGEMQIRDPADGVTILPAGVVGELWCKGPQVVKGYWNKPQA
                     TAETFVDGWLRTGDLARIDEEGFLFIIDRAKDMLIRGGENIYCVEVENVLYEHPAVMD
                     AAIVGIPHKTLGEEPGAVVTLKPGAVATEGELRNFVRERLAGFKVPVKVVFWPEMLPR
                     NANGKIVKTELKKVFAPETESA"
     gene            3592..4158
                     /locus_tag="VHN39_18360"
     CDS             3592..4158
                     /locus_tag="VHN39_18360"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008752 - FMN reductase (NAD(P)H) activity
                     [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0052873 - FMN reductase (NADPH) activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HEX2818362.1"
                     /translation="MSEPFIVGVGGTPRPGSTTERALALALRHAETAGARTKLFGGEF
                     LERLPHFNPGPAGPSPEQAELAAAVRDADGIILATPGYHGSLSGVVKNALDTLELTRG
                     HERPYFDGKAVGIIITADGAQAGGTTLMAVRGIIHAMRGWPTPFGAALNASNLFDETG
                     ECREAKDAAQLAMVAEQVMEFARMRAAR"
     gene            4155..5315
                     /gene="ribB"
                     /locus_tag="VHN39_18365"
     CDS             4155..5315
                     /gene="ribB"
                     /locus_tag="VHN39_18365"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEX2818363.1"
                     /translation="MKRPYLVPPAKTFGAGPASDPDAFTSAISPIEDILEDARNGRPY
                     ILVDAEDRENEGDVIIPAQFATPEQINFMAKHARGLICLSITAERARALRLPPMSSDN
                     QSGHGTAFTVSIEAREGVTTGISAHDRAHTVAVAIDPTKGMDEIVSPGHVFPLVAKDG
                     GVLVRAGHTEAAVDISRMAGLNPAGVICEIMKDDGSMARLPDLVAFAQLHGLKIGAIA
                     DLIAYRRRTERQIERVLETPFDSAYGGRFRMVIYRNILDGTEHVVLTKGKIDPDKPTL
                     VRMHRVDMAADMLGHTEARADYVPKALKAIAAYDGAGAAVFIRDSNPAWLSERYGQPD
                     VSQTENVLRDYGVGAQILIDLGVRDMNLLTSSKTVLPGSGGYGLRILGRVPL"
     gene            complement(5380..5907)
                     /locus_tag="VHN39_18370"
     CDS             complement(5380..5907)
                     /locus_tag="VHN39_18370"
                     /inference="COORDINATES: protein motif:HMM:TIGR02595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PEPxxWA-CTERM sorting domain-containing protein"
                     /protein_id="HEX2818364.1"
                     /translation="MKKFSAYFAGAAFAAGVLSAGVAAAATPVFVGSWEVDQGPDWPS
                     QPPAYTGQEAAALLFGGVASDYVISTVDNLATDINSEAWYSIWGRGGGTMFAQNYSDT
                     AAGGVYADNGAGFGNINNAASAYVRDNAEGSGFTNYAFRVGGAVPEPAAWALMVVGFG
                     GAGAALRRRRTLAHA"
BASE COUNT         1067 a         2130 c         1941 g          937 t
ORIGIN      
        1 caccccgatt tcgccgccca tcagctcgac gatctgtttg gagatggcca gccccagacc
       61 cgtcccgccg aaggtccgcg agactgacgg gtcagcctgg ttgaagcgct cgaaaatggc
      121 ggcgagctgg tcgtcggcga caccgacgcc ggtatcgctc accgagacgc agaggcggcg
      181 gccagcctcg gcgccgggct tgtcctcaac ccgcacctca acgccgcctt cgcgggtaaa
      241 cttcagggcg ttgctgagaa ggttcagcac cacctgctgc agtctcggtg cgtccccctc
      301 gagccggtga agctcgccgg cgatcacgac cgtcatggcc agaccgcgct gcctggcctg
      361 gtcctcgacc aggctggcga cggaattgac gacctgggcc ggatcgaagg gttgtgggtc
      421 gagtgcgaag gctccggatt cgagcttgga aaagtccaga acgctgttga ccacgaccag
      481 gagcgtcgag ctggcctcgt tgatcagttt ggcctggcgg gagtccttct ccgacagggc
      541 ggccgaggtc ctcagcaatc ctgaaaagcc aacgatggcg ttcagtggcg tccgcagttc
      601 gtgcgtgatg ttggcgagga agtcggactt cgccaccacc gcggcttcgg cgtgcttcaa
      661 ggcctccacc aggtcctgct ccaacgcctt gcggtggttg atgtctcgcg acatcgacac
      721 cagctccacc ggctcgccgg ttctcgggtc gttgatcagc gtgaagctgg tctccagcca
      781 ggacaaggcg ccgtccttgc ggaacagccg gtattcgaag gtgcagtcgc caccgtcggc
      841 gagcagcttt tcgagccgcg cctccacctt cggtcggtcc tcgggatgga cgtaggagaa
      901 atgctcgaat ttgcggaatt catcggcggt gtatcccagg gcgacctcga tcgacggcga
      961 gatgtagcgc cattctccgg agagcgcggt gcggcccacg atgtcgctga tgttgtccgc
     1021 cagcacccgg tactggaact cgctgtcgtg cagttgctcc tgggattcgt cgaacttccg
     1081 gcccgccgcg aaggtctgac gcgcgccggc gatggcgaac gcgatggcca gcatcatgaa
     1141 gcccaggatc gaccagcgac cgacgccgcc gtcgttcggc gcgagctgca ccaccgcaag
     1201 catcccaaat gtcgggaaga cgccgcagac ggtgaacccg atcggcgacc gggaggcgaa
     1261 ggtctgggca aagcccatca cgctcagcca gatgaccagc gcgcacaggc tgccttcgag
     1321 gccgccggtt cgccaaagca tcaaagccag gatgaaccag ttgccgatca gggccacgag
     1381 ggtggccaga tagttcacct gcagggtccg ggtgatcggg cgcccaagga actggcgtcg
     1441 gctcgcagac cagctccagg cctccacgct caggccgatg acggtccaga ccaggcaaac
     1501 ccgccacggc aacagcatca gcgacacgca gccggcccca accgcgaccg ctgctcgagg
     1561 tccgaggttc acgtgcgtct cgaccgcgag gctgtcgaag cgatgatcga gcagtttgag
     1621 cagcggcggg tcctccaccg gtaaccctag ccccggacga ctaaataccg cgttacctga
     1681 attcccgcgc gttcggctgg ctgaacaggg ccgcaagggt tagctattgc ctatcgtttc
     1741 tgcggccagc aggagacttg gagtccgcca ccgtctccgg tcaggccccg cttcggattt
     1801 gacgccattc acaggttccg agttctcgat gtctgacgct tcgacctcct ctccggcgtg
     1861 gccggtcatg tccgtcgccg aagcccatgc gcggctcacg gcgcccggcg agcggttcga
     1921 gatcgccgag atgccgatcc gcggcatcat gacccgggtc tggaagaacg ccccgccgac
     1981 gctgcgcgac gtcttcctca acagccgcgc gttccccgac cgcgagttcc tggtctacga
     2041 cgccgaccgc gccacctatg agggcttcgc ccgcgccacg ctcaccctcg ccaaacagct
     2101 ccaggccgac ggggtcagga agggcgaccg ggtcgcggtg atcatgcgca acctgccgga
     2161 atggccggtg gcgttcttcg cgggcatcct ggccggcgcc atcgtcaccc cgctgaacgc
     2221 ctggtggacg gggcctgagc tggagtatgg cctggccgat tccgggagca agatcgccat
     2281 tgtcgacgac gagcggctgg gccgggtcga ggattatctg gacaccctgg gcgacctgaa
     2341 gcgcgtctat gtttcgagga tgaccgaagc gtcttcgcat cccaagatcg cccgcctgga
     2401 agacgtcatc ggcccggtga acggctggga cgcgctcccc gacctgccgc tccccgacgt
     2461 ggagatgggc ccagaggacg acgccaccat cctctacacc tccggcacca cgggaaagcc
     2521 caagggcgcg ctcggcaccc accgcaacat gacctccaac atcggggccg gcggcatctc
     2581 ggcgacgcgc aacttcctgc gcgccggcca gcccctgccg gagagcgatc cgcacaagct
     2641 gccgcagcgc gtgacgctcc tggtcgtgcc cttcttccac gccaccggcc tgtcggcgac
     2701 gctggcgccg accatgaacg ccggcggcag gatcgtgctc atgcgccgct gggacgccga
     2761 gcccgccatg cggctgatcg agcgggagaa ggtctcctcc accggcggcg tgccgaccat
     2821 cgcctggcag ctcatcgagc atccggcgcg gaccaagtat gacctttcgt cactggtcgc
     2881 ggtgacctat ggcggcgcgc cctcggcccc ggagctggtc cgcaggatcg gcgagacctt
     2941 cccgggctcc cagcccggca acggctgggg catgaccgag accaccgcca ccttcacctc
     3001 gcacctgggc aaggactacg agaaccgccc cgacagcgcc ggccccgcgg ccccggtcgg
     3061 cgagatgcag attcgcgatc cagccgatgg cgtcacgatc ctgcccgccg gtgtcgtggg
     3121 cgaactctgg tgcaagggtc cgcaggtggt gaagggctac tggaacaagc cccaggctac
     3181 ggcggagacc ttcgtcgacg ggtggctgcg caccggcgat ctggcgcgga tcgacgagga
     3241 gggcttcctg ttcatcatcg accgggccaa ggacatgctg atccgcggcg gcgagaacat
     3301 ctactgcgtt gaggtcgaaa acgtcctcta cgaacacccc gcggtgatgg acgccgccat
     3361 cgtcggcatc ccgcacaaga cgttgggcga agaacccggc gcggtggtga ccctgaagcc
     3421 cggcgccgtc gccaccgagg gcgaactgcg taacttcgtc cgcgaacggc tggcgggttt
     3481 caaggtcccg gtgaaggtgg tcttctggcc agagatgctg ccccgcaacg ccaacggcaa
     3541 gatcgtcaag accgagctca agaaggtgtt cgcgcccgaa acggaaagcg catgagcgag
     3601 cccttcatcg ttggcgtcgg cggtacgccc cgcccgggct cgaccaccga gcgggcgctg
     3661 gcgctcgccc tgcgtcacgc cgagacggcc ggcgccagga ccaagctctt tggcggcgaa
     3721 ttcctcgagc gcctgccgca cttcaaccca ggtcccgcgg gtcccagccc agaacaggcc
     3781 gaactcgccg ccgcggtccg cgacgccgac gggatcatcc tggcgacgcc cggctaccac
     3841 ggctcgctct caggcgtggt caagaacgcg ctcgacaccc tggagctgac ccgaggccac
     3901 gagcggccct atttcgacgg caaggccgtg ggcatcatca tcaccgccga cggcgcccag
     3961 gccggcggca cgaccttgat ggcggtccgc ggcatcatac atgccatgcg gggctggccg
     4021 acgccgttcg gcgcggccct caacgcgtcg aacctcttcg acgagacggg cgagtgccgg
     4081 gaggcgaagg acgccgccca gctcgccatg gtcgccgaac aggtgatgga gttcgccaga
     4141 atgagggccg cccgatgaaa cgcccctacc tcgtgccccc cgccaagact ttcggggccg
     4201 gtcccgcgtc cgatcccgac gccttcacct cggccatctc gcccatcgag gacatcctcg
     4261 aggacgcccg caacggacgg ccctacattc tggtggacgc cgaggaccgg gagaacgagg
     4321 gcgacgtcat catcccggcc cagttcgcga cgccggaaca gatcaacttc atggccaagc
     4381 acgcccgcgg cctgatctgc ctctcgatca ccgccgagcg ggcccgcgcg ctgcgcctgc
     4441 cacccatgtc cagcgacaac cagtctggcc atggcaccgc cttcacggtc tcgatcgagg
     4501 cccgtgaggg ggtcaccacc ggtatctccg cccacgaccg cgcccacacc gtcgcggtcg
     4561 ccatcgaccc gaccaagggc atggacgaga tcgtctcccc cggccacgtc ttcccgctgg
     4621 tggccaagga cggcggcgtc ctggtccgcg ccggccacac cgaggccgcc gtcgatatct
     4681 cgcgcatggc ggggctgaat ccggcgggcg tgatctgcga gatcatgaag gacgacgggt
     4741 ccatggcccg tcttccagac ttggtcgcct ttgcacagct tcatggcctg aagatcggcg
     4801 ccatcgccga cctgatcgcc taccgcaggc gcaccgaacg ccagatcgag cgggtgctgg
     4861 agacgccgtt cgacagcgcc tacggcggcc gcttccggat ggtgatctac cgcaacatcc
     4921 tggacggcac cgaacatgtg gtcctgacca agggcaagat cgatccggac aagccgacgc
     4981 tggtgcgcat gcaccgcgtg gacatggccg ccgacatgct gggccacacc gaggcgcggg
     5041 ccgactatgt gcccaaggcg ctgaaggcca tcgcggccta tgacggtgcg ggcgcggcgg
     5101 tgttcatccg cgactcaaat cccgcctggc tttccgaacg ctacggccag cccgacgtta
     5161 gccagaccga gaatgtgctg cgcgactatg gcgtcggcgc ccagatcctc atcgacctcg
     5221 gcgtgcgcga catgaacctc ttgacctcgt ccaagaccgt cctgcccggc tccggcggtt
     5281 acggcctgcg aatcctgggc cgcgttccgc tctaggcggc ggcacgaaaa acgcccccgg
     5341 ccggagccga gggcgtcttg tcgaacctaa gagctcggat caggcgtgag cgagcgtccg
     5401 acgacggcgc agggccgcgc cggcgccgcc gaagccgacg accatcagag cccaggcggc
     5461 cggttccgga acggcgccgc cgacgcggaa cgcgtagttt gtgaatcccg agccttcagc
     5521 gttgtctctc acataggccg aagctgcatt gttaatattg ccaaagcccg cgccgttgtc
     5581 tgcgtagacg ccacccgccg ccgtatccga gtagttctgc gcaaacattg tgccgccgcc
     5641 acggccccag attgagtacc acgcctcgga gttgatatcc gtggcgaggt tgtcgaccgt
     5701 cgagatcaca tagtcggacg ccacgccgcc gaacagcaga gccgcagctt cctgaccggt
     5761 gtaggccggc ggttggctcg gccagtcggg accctggtcg acttcccagc tgcccacgaa
     5821 aaccggcgtg gccgcggcgg cgacgcctgc gctgaggacc ccggcggcga aggccgcgcc
     5881 ggcaaaatac gcactgaact tcttcatcga actcaaatcc ccaatgtatc cgcagcgcga
     5941 ccgaactcgt ccgactgcat cgatttacgc cgtctactaa cggtgatgcg taagcctccg
     6001 caacgcactt cccctagagg gcgagttaca agcataacga ccgcgcgaac cgccttcacg
     6061 cgtgcggcaa gttcg
//
LOCUS       DATAJL010000973         2305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112281,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000973 DATAJL010000000
VERSION     DATAJL010000973.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112281"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VHN39_18375"
     CDS             complement(<1..386)
                     /locus_tag="VHN39_18375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX2818365.1"
                     /translation="MGSLAQRVAQAADLVTVALDELLPRADGPESQLTEAMRYAALGP
                     GKRLRTFFALETGKMFDVPERSVLRAACALECIQAYSLIHDDLPCMDDDDMRRGRPTT
                     HRAYDEATAVLAGDALQTVAFEIMAHP"
     gene            complement(422..664)
                     /locus_tag="VHN39_18380"
     CDS             complement(422..664)
                     /locus_tag="VHN39_18380"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEX2818366.1"
                     /translation="MSEPADIATLSFEQALAELEQIVGRLESGQAPLEASIAMYERGA
                     ALKAHCEARLEAARLRVEKIVVSAGGAPGVEPAEFN"
     gene            complement(686..1297)
                     /locus_tag="VHN39_18385"
     CDS             complement(686..1297)
                     /locus_tag="VHN39_18385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX2818367.1"
                     /translation="MTAESPPAPRAPRRKTGVITLARHGEPALSRKVKLSSKEYRAFW
                     ARYELMGLLPGQAPPEHLVGFVKDCDVLISSTRLRAVESAQTVGKGKAFTQDEVLIEA
                     PLPPPNWPWIRLSPRIWGFMARSHWWFFNHHQGEENRRQAEARADRAAAKLEAIAEGG
                     QDVVVLAHGFFNVLIDRALRKRGWRRTFREGYKYWSTRRFERF"
     gene            complement(1512..>2305)
                     /locus_tag="VHN39_18390"
     CDS             complement(1512..>2305)
                     /locus_tag="VHN39_18390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007662346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="histone deacetylase family protein"
                     /protein_id="HEX2818368.1"
                     /translation="DAPLAEEADLARVHGQTYLDAIFAAKPGAGTLRLDPDTFMSAGS
                     LNAARRAAGAVVAAVRDVAAGEANRAFCAVRPPGHHAEPGLPMGFCIFSNVAIAARAA
                     QAAGLGKVAVVDFDIHHGNGTQAAFDGREGLFLASIQQWPMWPGTGHPDEPVSANIAN
                     AVAPEGGSREVWRKAFESLMPKVDAFAPDLIIISAGFDAHVRDPLGGGGQSLEAEDFA
                     WATRAIASVANRHAKGRVVSSLEGGYDLEALGSSALAHVRALSEG"
BASE COUNT          349 a          802 c          802 g          352 t
ORIGIN      
        1 ggatgggcca tgatctcgaa cgcaacggtc tgcaacgcat cgcccgccag cacggcggta
       61 gcctcgtcat aggcgcggtg ggtcgtcggg cggccgcggc gcatgtcgtc gtcgtccatg
      121 cacggcaggt cgtcgtggat caggctgtag gcctggatgc attccagcgc gcaggcggcc
      181 ctgagcaccg agcgctccgg cacgtcgaac atcttgccgg tttccagcgc gaagaaggtg
      241 cgcagacgct tgccgggccc gagcgccgcg tagcgcatgg cttcggtgag ctgcgattcc
      301 ggcccatcgg cgcgcggcag cagttcgtcc agcgccacgg tcaccaggtc ggcggcctgc
      361 gccacgcgtt gggccaaaga gcccaccgga ccctgtggcc cgcctggatc gttggcgggc
      421 atcagttgaa ctcggcaggc tcgactccgg gcgcgccgcc cgcgctcacc acgattttct
      481 ccacgcgcag ccgcgcggcc tcgagccggg cctcgcagtg ggccttcagc gccgcgccgc
      541 gctcatacat ggcgatcgag gcttccagcg gcgcctggcc ggattccagc cggcccacga
      601 tctgctcaag ctcggcgagg gcctgctcga agctcagggt ggcgatgtcg gccggttcgg
      661 acatgtaggc tcctgggggt ccttcctaga accgctcgaa gcgccgcgtc gaccagtatt
      721 tgtagccctc gcggaacgtc cggcgccaac cgcgcttgcg tagcgcccgg tcgatgagaa
      781 cgttgaagaa gccgtgggcc agcaccacga cgtcttggcc gccttcggcg atggcctcca
      841 gcttggcggc ggcccgatcc gcgcgggcct cggcctggcg gcggttctcc tcgccctggt
      901 ggtggttgaa gaaccaccaa tgggagcggg ccatgaaccc ccagattcgc ggcgacagcc
      961 tgatccatgg ccagttgggt ggcggcagcg gcgcctcgat cagcacttcg tcctgagtga
     1021 aggccttgcc cttgcccacg gtctgggcgc tctcgacggc gcgcaggcgg gtggacgaga
     1081 tcagcacgtc gcagtctttg acaaagccca cgagatgctc cggcggcgcc tggccgggca
     1141 gcagacccat cagctcgtac cgcgcccaga acgcgcggta ttccttcgac gacagcttga
     1201 ccttgcgcga gagcgccggc tcgccgtgac gggccagggt gatgacgccg gtctttcgtc
     1261 taggggcgcg gggcgcaggg ggagactcag cggtcaaggc gctcgccggt ccatccgaac
     1321 ggctggcgtc ccggttccga agttcgcata cgcttgcggc cggcgccgga cgaacttcgg
     1381 aaccgacaag gacgccagca agcatatgtt ttcttgtgtg cttccttgga tctcaagttc
     1441 gctcagagcc tggtcctcca ataggcgaac ttcagatcca gcacacaagc gtgcaacccc
     1501 tcactcgcgt cttacccctc cgagagggcc cgtacgtgcg caagcgccga cgagcccaga
     1561 gcctcaaggt cgtaaccgcc ctcaagcgag gacacaaccc ggcccttggc gtggcggttg
     1621 gccaccgagg cgatggcgcg ggtggcccag gcgaagtcct cggcctccag cgactggccg
     1681 ccaccgccca ggggatcgcg cacgtgggcg tcgaagcccg ccgagatgat gatcaggtcc
     1741 ggcgcgaagg cgtccacctt cggcatcagg ctctcgaagg ccttgcgcca gacctcgcgg
     1801 ctgccgccct ccggcgccac ggcgttggcg atgttggccg acacaggctc gtcggggtgg
     1861 ccggtgccgg gccacatggg ccactgctgg atcgaggcca ggaacagccc ctcccgcccg
     1921 tcgaacgccg cctgggtgcc gttgccgtgg tggatatcga agtcgacgac ggcgaccttg
     1981 cctagaccgg cggcctgggc ggcgcgggcg gcgatggcca cgttggagaa gatgcaaaag
     2041 cccatgggca ggcccggctc ggcgtgatgg cccggcggcc tgaccgcgca gaacgcccgg
     2101 ttcgcctcgc ccgccgccac gtcgcgcacg gcggccacca ccgcgcccgc ggcccggcgc
     2161 gcggcattga ggctgccggc cgacatgaag gtgtccgggt cgagcctgag cgtgcccgcg
     2221 cccggcttgg cggcaaagat ggcgtcgaga taagtctggc catgcacgcg ggcgaggtca
     2281 gcctcctcgg cgagcggcgc gtcac
//
LOCUS       DATAJL010000974         4967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_126902,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000974 DATAJL010000000
VERSION     DATAJL010000974.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4967
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126902"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VHN39_18395"
     CDS             complement(<1..438)
                     /locus_tag="VHN39_18395"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002518057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2818369.1"
                     /translation="MSLVSTTLQAFEGAPLPDPVRKAAIQFLVSGARKNAAAAGPNAD
                     AAFARQMSERPIAEHTDAANEQHYEVPAAFFQACLGPNLKYSSCLYAPGETLGQAEDR
                     ALGETALHADLKDGQTILELGCGWGSLSLWMARAMPKSKITSVS"
     gene            complement(461..1258)
                     /locus_tag="VHN39_18400"
     CDS             complement(461..1258)
                     /locus_tag="VHN39_18400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HEX2818370.1"
                     /translation="MVLILSAAVLAAMTAVMIGAWAYGLARKNGGWTDVFWTFGSGAI
                     LAAAALFPLTSSAMPQPRQWLVAGLVALWALRLGSYIGGRVSKHPEDPRYAKFRTDWG
                     KDYARNMLFVTLPQAPATALLALSVLIAARAPGHELALRDVLGVAILMLAIGGEGLAD
                     AQMKLFKSDPANKGKVADVGLWGWSRHPNYFFEWLGWLAYPVIGLDPAHPFTWLSFSA
                     PLVMFLLLTRVSGIPPLEEAQVISKGDAYRAYQARVSAFFPFPPKAS"
     gene            1394..2743
                     /locus_tag="VHN39_18405"
     CDS             1394..2743
                     /locus_tag="VHN39_18405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2818371.1"
                     /translation="MFIPDERRLRVAVVGGGIAGLSAAWLLSSRHDVTLFEADDRLGG
                     HANTTEAPNQAGGTTPVDTGFIVYNAPNYPNFTALLDHLGVVSIPADMALSVSLDEGA
                     FEYSSFGMSGMFAQKRNIFSARFWAMLRDVSRFYRHGPKDLAALEAPLTSLDDYLAQK
                     GYCQAFRDDHLLPQAAAIWSTPLAAIGAYPAAALIRFFQNHGMMSIFGRGLWRTVEGG
                     SRSYVRKLTQAFTGEVRTGVRVTGVRRVASGAEVRDVTGHVERFDEVVIAAHGDAALA
                     LLDDPTPEERRLLGAFTYSRNLTVLHTDPSAMPKRKAAWTSWNHVGRRDAPEEGCVTY
                     WMNRLQSLKTDTDLFVTLKPTRPIAPETVIKTEVYEHPLFDAGAIAAQREIWSLQGVK
                     NTWFCGSYFGHGFHEDALQAGLAVAEQLGGVRRPWTVADESGRIHLSEAPERVEAAA"
     gene            2740..3528
                     /locus_tag="VHN39_18410"
     CDS             2740..3528
                     /locus_tag="VHN39_18410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1365 domain-containing protein"
                     /protein_id="HEX2818372.1"
                     /translation="MTPVTREGASGLYTGLVSHARVKPRKHKLAYKIFMLLIDLDELP
                     DLKLKTLGIGRFNLFGFDPKRFGDSSGRPLKAQIEATLAAADIPHGGPIRMLAMPQIL
                     GRAFNPLTVYFCHAPNQALTAILYEVNNTFGERHSYLIPAPNAALVKQGCAKEFYVSP
                     FMDMDLTYAFRILRPEERVLVAVDTSDAEGLILTASFSGERRPLTDGALLKAWLTHPW
                     MSVGVVAAIHFEALKIWLKGEKVRVRPPAPERAVTVSPAAKLAA"
     gene            3595..4122
                     /locus_tag="VHN39_18415"
     CDS             3595..4122
                     /locus_tag="VHN39_18415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818373.1"
                     /translation="MRAFLIFAAVSALGFPAKAEALGPLGPAAMGKVQCYQPNEVAKT
                     CRSIGAYSFSPNGEIENIATMMIMTGPVVIMTTRAPAHIKGDRDCGTLRPEHIDRSTF
                     IFDGRPANAAQTAALRAEMKASLAATFGHETCSAYVPNGQTLLATSTLDGVPQPAADQ
                     KMIWVAPADGWRVAP"
     gene            complement(4164..4709)
                     /locus_tag="VHN39_18420"
     CDS             complement(4164..4709)
                     /locus_tag="VHN39_18420"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2818374.1"
                     /translation="MKGSWTASLLAPVAVSILLALGTSRPAFAGPDEDELAKIEHDFA
                     AMQITKDAATIERVAAIMDESFRFTDPTRRDSGASKEQMLRTIRSEKLVIASTDFRPF
                     SIRVFGSTAIVEGVNTSTQTFDGKDFSGVFAWVDVFEKRGGRWIWLFSQSGQVGDKLS
                     DKDPCGGPSCATTHPGFSLKK"
BASE COUNT          826 a         1662 c         1696 g          783 t
ORIGIN      
        1 ggagaccgac gtaattttcg acttcggcat cgcgcgcgcc atccagagcg acagcgaacc
       61 ccagccgcag ccgagctcca ggatcgtctg gccgtccttc aggtctgcgt ggagcgcggt
      121 ctcgcccagc gcccggtcct cggcctggcc gagggtttcg cccggggcgt agaggcagga
      181 ggagtacttc aggttcgggc ccaggcaggc ctggaagaag gcggcgggga cctcgtagtg
      241 ctgctcgttg gccgcgtcgg tgtgctcggc gatcggccgt tcggacatct ggcgggcgaa
      301 ggcggcgtcg gcgttcgggc cggcggcggc ggcgttcttg cgggcgccgg agaccaggaa
      361 ctggatcgcg gccttgcgca ccggatcggg aagcggcgcg ccttcaaagg cctgcagggt
      421 ggtggaaacg agactcatac gggggtcctt ctgggggtct tcaggaagct ttgggcggga
      481 acgggaagaa ggctgagacc cgggcctggt aggcgcggta agcgtcgccc ttggaaatga
      541 cctgggcctc ctccaacggc gggatgccgg agacccgggt cagaagcagg aacatcacca
      601 gcggcgccga gaagctgagc caggtgaacg ggtgcgcggg gtcgagaccg atcaccggat
      661 aggccagcca gcccagccac tcgaagaaat agttgggatg ccgcgaccag ccccagagac
      721 cgacgtcggc caccttgccc ttgttggcgg ggtcggactt gaagagcttc atctgggcgt
      781 cggccaggcc ctcgccgccg atggccagca tcagaatggc gacgcccagc acgtcgcgaa
      841 gcgccagctc gtggccgggc gcgcgcgccg cgatcaggac cgagagcgcc agcagcgctg
      901 tcgccggcgc ctgcggaagc gtcacgaaga gcatgttgcg cgcatagtcc ttgccccagt
      961 cggtgcggaa cttggcgtag cgcggatcct cgggatgctt gctcacccgg ccgccgatgt
     1021 agctccccag gcgcagcgcc cagagcgcca ccaagcccgc caccagccac tggcgcggct
     1081 gcggcatggc gctcgatgtg aggggaaaaa gcgcggccgc ggccaggatg gccccgctgc
     1141 cgaaggtcca gaagacgtcg gtccagccgc cgttctttcg ggccagacca taggcccagg
     1201 cgccgatcat caccgctgtc atcgcggcga gcacggcggc gctcaagatc aagaccatgt
     1261 cgggacccac tttccaccca gccgatacgg ggccatacct tggcccggat gcatccgctg
     1321 ggggaagcct cccgtagctc aaagaggtgg cggcgccccg gcgacgcgct gttgtttggc
     1381 gaagaggtta cgcgtgttca taccggatga gcgtcgtctg cgggtggccg ttgtaggcgg
     1441 cgggatcgcg ggcctgtcgg cggcctggct gttgtcgagc cgtcacgacg tgacgctgtt
     1501 cgaggccgac gaccggctgg gcgggcacgc caacaccacc gaggcgccga atcaggcggg
     1561 cgggacgacc ccggtggaca ccggcttcat cgtctacaac gcgcccaact atccgaattt
     1621 caccgccctg ctcgatcacc tgggcgtggt gtcgattccg gccgacatgg cgctcagcgt
     1681 cagcctggac gagggcgcct tcgaatattc cagcttcggg atgagcggca tgttcgccca
     1741 gaagcggaac atcttctccg cgcggttctg ggccatgctg cgcgacgtga gccggttcta
     1801 ccgccacggg ccgaaggatc tggccgcgct ggaagcgcca ttgacctcgc tcgacgacta
     1861 cctggcccag aagggctact gccaggcgtt ccgcgacgac cacctcctgc cccaggccgc
     1921 ggccatctgg tcgacgccgc tggcggcgat cggcgcctat ccggccgcgg cgctgatccg
     1981 cttcttccag aaccacggga tgatgagcat cttcggccgg ggcctgtggc gcacggtcga
     2041 ggggggcagc cggtcctatg tccgcaagct gacgcaggcc ttcaccggcg aggtccgcac
     2101 gggcgtgcgg gtaaccggcg tcaggcgcgt ggccagcggg gccgaggtcc gcgacgtcac
     2161 gggccatgtt gagcggttcg acgaggtggt gatcgccgcc cacggcgatg cggcgctcgc
     2221 cctgctggac gatccgacgc cggaggaacg gcgcctgctg ggcgcgttca cgtacagccg
     2281 caacctcacg gttctgcaca ccgaccccag cgccatgccc aagcgcaagg ctgcctggac
     2341 cagctggaac cacgtgggcc gccgcgatgc gccggaggag ggctgcgtca cctactggat
     2401 gaaccggctg cagagcctga agaccgacac ggaccttttc gtgacgctga agccgacgcg
     2461 gccgatcgcg ccggagacgg tgatcaagac cgaggtctac gagcacccgc tattcgacgc
     2521 cggcgccatc gccgcccagc gggagatctg gagcctgcag ggggtgaaga acacctggtt
     2581 ctgcggctcc tacttcggcc acggcttcca cgaggatgcg ctgcaagcgg gcctggcggt
     2641 ggccgagcaa ctgggcggcg tgcgccggcc ctggaccgtc gcggacgaaa gcggccgcat
     2701 ccatctctcc gaagcgccgg agcgcgtgga ggccgcggcg tgacccccgt gactcgcgag
     2761 ggcgcgtctg gcctctacac gggcctggtc agccatgcgc gggtgaagcc ccgcaagcac
     2821 aagctcgcct acaagatctt catgctcttg atcgatctgg acgagcttcc ggacctgaag
     2881 ctgaagacgc tcggcattgg acgtttcaac ctcttcggct tcgatcccaa gcggttcggc
     2941 gacagctccg gacgtccgct caaggcccag atcgaggcga ctctggcggc cgcggacatt
     3001 ccgcacggcg ggccgatccg catgctggcc atgccgcaga tcctcggccg ggcgttcaat
     3061 ccgctgacgg tctatttctg ccacgcaccg aaccaggcgc tcaccgccat cctctacgag
     3121 gtgaacaaca ccttcggcga acggcacagc tatctgatcc cggcgcccaa cgcggccctg
     3181 gtcaagcagg gctgcgccaa ggaattctac gtctcgccgt tcatggacat ggacctgacc
     3241 tacgccttcc ggatcctgcg tccggaggag cgggtgctgg tggccgtgga caccagcgac
     3301 gccgagggtc tgatcctgac cgccagcttc tccggtgagc gccggccgct caccgatggc
     3361 gcgctgttga aggcctggct cacccatccc tggatgagcg tgggcgtcgt cgcggcgatc
     3421 cacttcgagg cattgaagat ctggctgaag ggcgagaagg tgcgcgtccg cccgccggcg
     3481 ccggaacggg cggtgacggt gtcgccggcg gccaagctcg cggcctaggg ccaggacccc
     3541 ctccaaaccg ttccaccgcc tgcgtgtccg gagccatcca gggagaggtc catcatgcgc
     3601 gcgttcctga ttttcgcggc cgtctcggcg ctcggattcc cggcgaaggc cgaggcgctg
     3661 ggccccttgg ggcccgccgc aatgggcaag gtccagtgct accagccgaa cgaggtcgct
     3721 aagacctgcc gctcgatcgg cgcctacagt ttcagcccca acggcgagat cgagaacatc
     3781 gccaccatga tgatcatgac gggtccggtg gtgatcatga ccacccgcgc tccagcccac
     3841 atcaaggggg accgggactg cgggaccctg cggcctgagc acatcgatcg gtccaccttc
     3901 atcttcgacg gccggccggc caacgcggcg cagaccgccg ccctgcgcgc tgagatgaaa
     3961 gcgtccctgg ccgcgacctt cggccacgag acctgcagcg cctacgtccc caacggccag
     4021 acgctgctcg ccacctcgac ccttgacggc gtcccgcagc ccgcggcgga ccagaagatg
     4081 atctgggtgg cgcccgcgga cggctggcgc gtggcgccct aaggccggca aggtctgcca
     4141 gtgcgcggcg ccaggcgcgg acctcacttc ttcagcgaaa accccggatg ggttgtcgcg
     4201 cacgatggcc cgccgcacgg atccttgtcg gacaatttgt ccccgacctg cccgctctgg
     4261 ctgaacagcc agatccagcg gccgccccgc ttctcgaaca cgtcgaccca ggcgaagacg
     4321 ccgctgaaat ccttgccgtc aaaggtctgg gtggaggtgt tcacaccctc gacaatggcc
     4381 gtcgagccga acacccggat ggagaagggc cggaaatcgg ttgaagcgat caccagcttt
     4441 tcggacctga tcgtccgcag catctgctct ttcgaggcgc ccgaatcgcg tcgggtgggg
     4501 tcggtgaagc ggaagctctc atccatgatc gccgcgacgc gctcaatcgt cgccgcatcc
     4561 ttggtgatct gcatggcggc gaagtcgtgc tcgatcttcg cgagttcatc ctcgtcgggc
     4621 ccggcgaaag cggggcgtga ggtcccgagg gcaaggagga tcgagacggc gacgggcgcc
     4681 aggagcgagg cggtccagga ccctttcatc gcgcgtttcc tctgcggtcc ggaccagagc
     4741 tctcgttcgt aggcttgaat attacgaatg taaataatct ctccagactt taacgagcgt
     4801 cgccgcctga tcgcctctac agttcacgtc gcgcaagcgg agacggcgat gagcgatcag
     4861 ggcgacgggg tctggtttcg gcgtagcgcc cggggattgg gctacaattt cgtgccggtc
     4921 agctggcagg gctgggcgtt gatcctggcg ctgacgcccg tccttct
//
LOCUS       DATAJL010000975         1784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_126997,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000975 DATAJL010000000
VERSION     DATAJL010000975.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_126997"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..903)
                     /gene="secF"
                     /locus_tag="VHN39_18425"
     CDS             complement(<1..903)
                     /gene="secF"
                     /locus_tag="VHN39_18425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEX2818375.1"
                     /translation="MKFWPLIKVLPVRTHFRFVRWSRLFASLSILAIAGSLFLTLYPF
                     KPPCGGLACGIDFKGGTVMEISTAPKAIDNAQIHAALQGMNLHETVVAVGAPGSALIK
                     FEAPPGADISATVTHAQANLTKTLGAVKFVSTDVVGPTVSGELLTSGLLGLGAAILAM
                     LLYIWFRFELQFGLGAVAALFHDVFLTFGMIAILRIEFDLRSVAAILTIIGYSMNDTV
                     VVFDRFRENLRKYKRMPLGEVIDMSINEMLTRTIITSMTAVLALVALAVFGGPSLYGL
                     SIIMLFGIGIGTYSSIYIAAPVIIL"
     gene            complement(917..>1784)
                     /gene="secD"
                     /locus_tag="VHN39_18430"
     CDS             complement(917..>1784)
                     /gene="secD"
                     /locus_tag="VHN39_18430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008259662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEX2818376.1"
                     /translation="SYVVKKRQSITGEMLTDAQPGFDQNGGGSEVRFRMNGIGSRRFA
                     DITRQNIGKRFAIVLDKKIISAPVIQGVIPAGSGSITGRFTPESANELSVLLRAGALP
                     APMKVEEQRTVGAELGADAVKAGAISAIVGLVATMIFMLLIYGGLFGGISLIALAVNA
                     VMIVGVMSFTQAVLTLPGIAGLILTLAVAVDANVLIYERMRDELRAGRKLIDAMEAGF
                     ARAWGTIFDANMTHIFSALIMFNLGSGPVKGFAWTLSVGVFTTVFSAVLVTQVLLAWW
                     FKAARPKTLPIA"
BASE COUNT          345 a          574 c          597 g          268 t
ORIGIN      
        1 gagtatgatc accggggcag cgatgtagat cgacgaatag gtgccgatcc cgatgccgaa
       61 cagcatgatg atcgacagcc cgtagagcga cggcccgccg aacacagcga gcgccaccag
      121 cgccaggacg gcggtcatgg aggtgatgat ggtccgcgtc agcatctcgt tgatcgacat
      181 gtcgatcact tcgcccagcg gcatgcgctt gtacttgcgc agattctccc ggaaccggtc
      241 gaacaccacc accgtgtcgt tcatggaata gccgatgatc gtcaggatag cggcaacgga
      301 cctgaggtcg aactcgatcc gcaggatcgc gatcatgcca aaggtcagga agacgtcgtg
      361 gaacagggcc gccaccgcgc ccaggccgaa ctgcagctcg aagcggaacc agatgtagag
      421 cagcatcgcc aggatcgcgg cgccgaggcc cagcaggccc gaggtcagaa gctcgcccga
      481 gacggtgggc ccgaccacat cggtcgagac gaacttcacg gcccccagcg tcttggtgag
      541 gttggcctgg gcgtgggtga cggtcgcgct gatgtcggcc cccggcggcg cctcgaactt
      601 gatcagcgcc gagcccggcg cgcccaccgc caccaccgtc tcgtgcaggt tcatgccctg
      661 cagggcggcg tggatctggg cgttgtcgat cgccttcggc gcggtggaga tttccatcac
      721 cgtgccgccc ttgaagtcga tgccgcaggc gagcccgccg cagggcggct tgaacggata
      781 gagggtcagg aacagcgacc cggcgatcgc caggatcgag aggctggcga acagccgcga
      841 ccagcgcacg aaccgaaagt gcgtccggac cggcaggacc ttgatcaggg gccagaattt
      901 caaagcttgg gctccctcag gcgatcggca gcgtcttcgg ccgggcggct ttgaaccacc
      961 aggccagaag cacttgggtg acgaggacgg ccgagaacac cgtggtgaac acgccgaccg
     1021 acagggtcca ggcaaagccc ttcacgggac cggagcccag gttgaacatg atcagggccg
     1081 agaagatgtg ggtcatgttg gcgtcgaaga tggtgcccca ggcccgggcg aagccggctt
     1141 ccatggcgtc gatcagcttg cggccggcgc gcagctcatc gcgcatccgc tcatagatca
     1201 ggacgttggc gtcgacggcc acggcgaggg tcaagatcag gccggcgatg cccggcaggg
     1261 tcagcaccgc ctgggtgaag ctcatcaccc ccacgatcat caccgcattg accgccaacg
     1321 cgatcagcga gatgccgcca aagaggccgc catagatcag cagcatgaag atcatcgtgg
     1381 ccacgaggcc gacgatggcc gagatggcgc cggccttgac ggcgtcggcg cccagctcgg
     1441 cgcccacggt ccgctgttcc tcgaccttca tcggcgccgg aagcgcgccg gcccgaagca
     1501 ggaccgagag ctcgttggcg ctttccggcg tgaaccgacc ggtgatgctg ccggacccgg
     1561 ccgggataac cccctggatg accggggccg agatgatctt cttgtccagc acgatggcga
     1621 agcgcttgcc gatgttctga cgcgtgatgt cggcgaaacg ccgcgagccg atcccgttca
     1681 tgcggaaccg cacctccgag ccgccgccgt tctggtcgaa gccaggttgg gcgtcggtca
     1741 gcatctcgcc ggtgatcgac tggcgcttct tgaccacgta gctc
//
LOCUS       DATAJL010000976         2481 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127001,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000976 DATAJL010000000
VERSION     DATAJL010000976.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2481
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127001"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1168
                     /locus_tag="VHN39_18435"
     CDS             <1..1168
                     /locus_tag="VHN39_18435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-CoA acetyltransferase"
                     /protein_id="HEX2818377.1"
                     /translation="EFLGSAVKRLTKGLPFDDWRAAEDEDLPEPDRIGDPRSGVTPYE
                     ARHGLNRPINIYPMFENALRARDHRSIADHQARLGRLFAPFTKVAAGNPEAWFPTERT
                     AEELVEVSERNRMVGFPYPKLLNAIMEVDQSAGVIIASERKARELGVPEDKWVYLHGC
                     ADAADLWFPLDRQNFHSSPAMRLTGQRALEMAGVGLADIDFIDLYSCFPVAVEIGAEE
                     LGLALDDPRGLTVTGGLPYAGGPGNNYAMHSIATMAGKLRAKPGSYGLVTANGWYLTK
                     QSTGIYSTKRPDTPFERQDPGVLQRQIDGLAHPAVTETPQGAARIETYTVVHRREGPF
                     MGIVIGRDDANRRFVAHTSNDAVTLAGLEQGEQVGRAGRVGPGPDGLTNLFTPD"
     gene            1177..1746
                     /locus_tag="VHN39_18440"
     CDS             1177..1746
                     /locus_tag="VHN39_18440"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX2818378.1"
                     /translation="MARLYLIRHGKPSATWGGDDDDPGLDATGQAQARAARDWLLALP
                     AAQRPTKVVSSPLRRCRETAEPAAQALGVEVEVDARVGEIPTPAALSLEERGPWLRKS
                     FAGTWTEIEGDLDYDAWRREIVASLVSRGNTAVFSHYVATNAVVSQLLGVAQVLAFRP
                     DHASITVLETDGQALSLVETGREATTGVL"
     gene            1770..>2481
                     /locus_tag="VHN39_18445"
     CDS             1770..>2481
                     /locus_tag="VHN39_18445"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HEX2818379.1"
                     /translation="MRQILSVAEMGRADAAAIAAGTPGLTLMERAGTAVADVVCARFA
                     RQAALVLCGPGNNGGDGYVAARVLKDRGWPVEVRSFGEPATQDAQAASARWANVAEEG
                     ATRPLNGALEPGVWIDALFGAGLSRPLEGAAAAAALRMAEAPEQVVAVDVPSGVPGDT
                     GKPIGPAACAALTVTFHAKKPAHVLEPGRSRCGEVIVADIGLAANDSRTVENGPELWL
                     PRFPWPTAASHKHARGRLV"
BASE COUNT          384 a          816 c          912 g          369 t
ORIGIN      
        1 cgaattcctg ggttcagcgg ttaagcggct caccaagggc ttgccgttcg acgactggcg
       61 tgcggcggaa gacgaggacc tgccggagcc ggatcggatc ggcgatccgc gctcgggcgt
      121 cacgccctat gaggcgcgac acggtctgaa ccggcccatc aacatctacc cgatgttcga
      181 gaatgcgttg cgggcgcggg atcatcgctc catcgccgac catcaggcgc ggctggggcg
      241 gctgttcgcg cccttcacca aagtggccgc gggcaacccc gaggcctggt tcccgaccga
      301 gcggacggcc gaggaactgg tcgaggtctc cgagaggaac cggatggtgg gctttcccta
      361 tccgaagctc ctgaacgcca tcatggaggt ggaccagtcg gccggcgtga tcatcgccag
      421 cgagcgcaag gcccgcgagc tgggcgtgcc tgaggacaag tgggtctatc tgcacggctg
      481 tgcggacgcc gcagacctgt ggtttccgct ggatcgccag aatttccatt ccagcccggc
      541 catgcggctg actggccagc gggcgctgga gatggcgggc gtgggcctgg ccgacatcga
      601 tttcatcgat ctctattcct gcttcccggt ggcggtggag atcggggccg aggaactggg
      661 ccttgcactg gacgatccgc gcgggctgac ggtgaccggc gggctaccct atgcgggcgg
      721 acccgggaac aactacgcca tgcactccat cgccacgatg gcgggcaagc tgcgggcgaa
      781 accgggaagc tacgggctgg tgaccgccaa cggctggtac ctgaccaagc agtcgacggg
      841 aatctactcc acgaagcgcc cagacacgcc gttcgagcgg caagaccctg gcgtcctgca
      901 gcgccagatc gacggcctgg cccatcccgc cgtcaccgaa acgccgcaag gcgcggcgag
      961 gatcgagacc tacaccgtcg tccaccgccg cgaggggccg ttcatgggga tcgtcatcgg
     1021 ccgcgacgac gccaaccgca ggttcgtggc ccatacgtcg aacgacgctg tgacattggc
     1081 cggattggag cagggcgagc aggtcgggcg cgccggccgg gtcggcccgg gccccgatgg
     1141 tctgaccaac ctcttcactc cggactgaga ccgcgcatgg cccgactcta cctgatccgc
     1201 catggcaaac cgtccgcgac ctggggaggg gatgatgacg atcctggcct cgacgcaacc
     1261 ggccaggcgc aggccagggc cgcgcgggac tggctactgg cgctgccggc ggcccaacgg
     1321 ccgacgaagg tggtgagctc gcctctgagg cgctgccgcg agaccgctga acccgccgcc
     1381 caggcgctgg gcgtggaggt cgaggtcgat gcgcgggtgg gggagatccc gacgcccgcg
     1441 gccttgtcgc tggaggagcg cgggccgtgg ctgcgcaaat ccttcgccgg aacctggact
     1501 gagatcgagg gggacctcga ctacgacgcc tggcgccgcg agatcgtcgc ctcgctggtg
     1561 tcgcgcggga acaccgcggt cttctcgcac tatgtggcga caaatgcggt ggtctcccag
     1621 ctgctgggcg tcgcacaagt gctggcgttc cgtccggacc acgcctcgat caccgtgctg
     1681 gagactgacg gccaggccct gagcctggtg gagacgggcc gtgaagcgac cacgggcgtg
     1741 ctttagggtg gggcactaag gctttgaacg tgcgtcaaat cctttctgtc gccgagatgg
     1801 gtcgcgctga cgctgcggcg atcgccgccg gcacgccggg gctcactttg atggagcgtg
     1861 cggggaccgc cgtggccgac gtggtctgcg cgcgtttcgc gcggcaggcg gcgctggtcc
     1921 tctgcgggcc ggggaacaac ggcggcgacg gctatgtggc cgcccgggtg ctgaaggatc
     1981 gcggctggcc ggtggaggtg cgaagcttcg gagagcccgc cacccaggac gcccaggccg
     2041 ccagcgcccg ctgggccaat gttgcggaag agggcgcgac caggccgctg aacggtgcgc
     2101 tggagcccgg cgtctggatc gacgccctgt ttggcgctgg gctctcgcgc ccgctggaag
     2161 gagcggcggc cgcggcggcg ctgcgcatgg ccgaggcgcc ggaacaggtg gtggcggtgg
     2221 acgtcccgag cggcgtcccc ggcgataccg gcaagccgat cggcccggcg gcctgcgcag
     2281 ccctgactgt gaccttccac gccaagaagc cggcccatgt tctggagccg ggtcgtagcc
     2341 gctgtggcga ggtcatcgtg gctgacatcg ggctcgccgc caacgatagc cggaccgtcg
     2401 agaatgggcc ggagctctgg ctcccgcgct tcccctggcc gacggcggcc tcgcacaagc
     2461 atgcgcgcgg acggctggtg g
//
LOCUS       DATAJL010000977         2401 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127060,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000977 DATAJL010000000
VERSION     DATAJL010000977.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2401)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2401)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127060"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..1543)
                     /locus_tag="VHN39_18450"
     CDS             complement(56..1543)
                     /locus_tag="VHN39_18450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HEX2818380.1"
                     /translation="MKMPLPDPALMARKGEIVRALQRLVPGEGVIGDPAGLVPFQSDG
                     LSAYRQTPLAVVLPETVKQVSAVLAWCQAHGVKVVPRGAGTSLSGGALPLQDGVVLGM
                     AKFNRILEVDYANRCAVVQPGVTNLAITGAVEADGFYYAPDPSSQIACTIGGNVAENS
                     GGVHCLKYGLTTNNLLGCEIVLMSGEIVRLGGKGFDTAGYDLLGIVTGSEGLLGVVTE
                     VTVRLLTKPQTARAMLLGFGSVEAAGACVGDIIAAGVIPAGLEMMDKPAIQAAEAFVG
                     AGYPLDAEALLIVELDGPEAECAELSAHVAELAKARGATTIRTSGSDAERMVFWAGRK
                     AAFPAVGRISPDYYCMDGTIPRGRLPEVLTRITEMSGRYGLRVANVFHAGDGNLHPLI
                     LYDADQPGELEAAEAFGADILKLCVAVGGVLTGEHGVGVEKRDLMGEMFNETDLACQQ
                     RVKCAFDPDLLLNPGKVFPRLHRCAELGRVHVHRGAVAFPELPRF"
     gene            complement(1749..>2401)
                     /locus_tag="VHN39_18455"
     CDS             complement(1749..>2401)
                     /locus_tag="VHN39_18455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818381.1"
                     /translation="GGLAVRLVGTTTTRTAHNVIGRRARPGKHLVVSTPKSGWLHCAG
                     ERGSGIAIWLGLARWLAASSDHNVTVVAASGHEFDGYGGDQFTEHLAPKPADTRLWVA
                     IGANVAAYDFALTDGRIVRQAGPQATRTLGCSEPLLPAAAKAFAGQRGYATPIDLDTQ
                     TAPGELAHFRALGYRPLVGLVAGHPLHHTRRDVADVTDGTVLEPVARGLAAIIAAA"
BASE COUNT          360 a          867 c          813 g          361 t
ORIGIN      
        1 ccaccacctc cgctgcggtc ttcggcgtct cggtgcgcag gccaaggtcc agcatctaaa
       61 acctcggcaa ctcggggaag gccaccgcgc cgcgatgcac atgcacccgg ccgagctcgg
      121 cgcagcggtg caggcgcggg aacaccttgc ccgggttgag caagaggtcg ggatcgaagg
      181 cgcacttcac ccgctgctgg caggcgaggt cggtctcgtt gaacatctcc cccatcaggt
      241 cgcgcttttc gacgcccacc ccgtgctccc cggtgagcac gccgcccacc gccacgcaga
      301 gcttgaggat gtcggcgccg aaggcctcgg ccgcctccag ttctcccggc tggtcggcgt
      361 catagaggat cagggggtgc aggttgccgt cgccggcgtg gaagacgttg gcgacccgga
      421 ggccatagcg gccgctcatc tcggtgatcc tggtcagcac ctccggcagc cggccccgcg
      481 ggatggtgcc gtccatgcag tagtagtccg gcgagatgcg ccccaccgcc gggaaggccg
      541 ccttgcgccc ggcccagaac accatgcgtt ccgcgtcact ccccgaggtg cggatggtcg
      601 tggccccgcg cgccttcgcc agctccgcca cgtgggccga cagctccgcg cactccgcct
      661 ccggcccgtc cagctcgacg atcagcaggg cctcggcgtc gaggggatag ccggcgccca
      721 cgaaagcctc ggccgcctgg atcgccggct tgtccatcat ctccagcccc gctgggatca
      781 cgcccgcggc gatgatgtcg cccacgcagg cgccggcggc ctccaccgag ccgaacccca
      841 gcagcatggc ccgcgccgtc tgcggcttcg tcagtaggcg gacggtcacc tcggtgacga
      901 caccgagcag gccctccgag ccggtcacaa tgcccagcag gtcgtagccg gcggtgtcga
      961 accccttgcc gccgaggcgc acgatctcgc cgctcatcag cacgatctcg cagcccagca
     1021 gattgttggt ggtcaggccg tatttcaggc agtgcacccc gccggaattc tccgccacat
     1081 tgccgccgat ggtgcaggcg atctggctcg acgggtcggg cgcgtagtag aagccgtccg
     1141 cctcgacggc gccggtgatg gcgagattgg tcacgccggg ctgcaccacg gcgcagcggt
     1201 tggcgtagtc cacctccagg atgcggttga acttggccat gccgagcacg acgccgtcct
     1261 gcagcggcag cgccccgccg gagagcgacg tgccggcgcc gcgcggcacc accttcacgc
     1321 catgggcctg gcaccaggcc agcacggcgg agacctgctt gaccgtctcc ggcagcacca
     1381 ccgccagcgg cgtctggcga taggcggaaa gtccgtccga ctggaacggg accaacccgg
     1441 caggatcgcc gatcactccc tcgccgggaa ccagccgctg cagcgcgcgc acgatctcgc
     1501 ccttgcgggc catcagcgcg gggtcgggga gcggcatctt catcctagtg tcccgattcc
     1561 gaagttcgct tgagcttgcg gccggcgtcg gacgaacttc ggaatcgatg aggacactag
     1621 caagtctggg tttcctagtg tgcttcttgg atctgaagtt cgctcagtgc ttggtcctga
     1681 ctgcggcgaa cttcagatcc agcacactag gcgaccacga accaaagttc gctggccggg
     1741 tccagcggtt aggccgccgc gatgatcgcc gccaggccgc gcgccacagg ttccagcacg
     1801 gtcccgtccg tcacgtccgc cacgtcgcgc cgggtgtggt gcagcgggtg gccggcgacc
     1861 aggcccacca acggccggta tcccagcgcc cggaaatggg cgagctcgcc gggcgcggtc
     1921 tgggtgtcga ggtcgatggg cgtcgcatag ccccgctggc cggcgaaggc cttggcggcg
     1981 gccggcagca ggggttctga gcagcccagg gtccgcgtcg cctgcggccc cgcctggcgt
     2041 acgatcctgc cgtcggtcag ggcgaagtcg taggccgcga cattggctcc gatggcgacc
     2101 cacagcctgg tgtcggcggg cttgggcgcc agatgctctg tgaactggtc gccgccatag
     2161 ccgtcgaact catggcccga ggccgccacg accgtgacgt tgtgatcgct cgaggccgcc
     2221 agccagcgcg ccagtcccag ccagatggcg atccccgagc cgcgttcgcc cgcgcaatgc
     2281 agccagccgc tcttgggcgt cgagaccacc agatgcttcc ccgggcgggc gcggcggccg
     2341 atgacgttat gcgccgtgcg ggtcgtggtg gttccgacca gccggacggc gagaccgcca
     2401 c
//
LOCUS       DATAJL010000978         3034 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112470,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000978 DATAJL010000000
VERSION     DATAJL010000978.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112470"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..686)
                     /locus_tag="VHN39_18460"
     CDS             complement(<1..686)
                     /locus_tag="VHN39_18460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818382.1"
                     /translation="MKMFLSVLGRLLARPAGHGRMSAWGLALLLAVMLAVGGGGRASA
                     ASFVDAGLPDVPADKRVVIAHPQPVQLLFQFHTKGAPNLQATKLVKQPVVDAVKASGL
                     FSAVSEDPAPNGAVLNVIIDNIVDPDDLRAAEANGVKTGATLFIAGSTVRDHYVATLD
                     YIGGPTAPKITRTASHSLLVQMGLINSAPANAVKVDGGIKGALFTMARQIVSNPLNAL
                     ASDPGFAPAA"
     gene            complement(775..1005)
                     /locus_tag="VHN39_18465"
     CDS             complement(775..1005)
                     /locus_tag="VHN39_18465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818383.1"
                     /translation="MKRIDLDDLPPRLAALLAGAEPGEDVLLVRSGVVVGRLTGGAAE
                     AATGAQVESELPSEENAKEIFEQFRSMMEDEF"
     gene            1065..2591
                     /locus_tag="VHN39_18470"
     CDS             1065..2591
                     /locus_tag="VHN39_18470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HEX2818384.1"
                     /translation="MAYKSMREFMGKLEAAGELVRVTEPVSTVLEMTEIHRRLLATGG
                     PAVLFENVIRADGERSPMPCLINLFGTVKRVAMGVTLEGRERATAADLREVGELLAFL
                     RAPEPPRGLKDAWDMLPLAKTVMSMRPAIVKKAPVQQVVWTGDKIDLNKLPIQTCWPG
                     EPAPLITWPLVVTKGPSETREDDYNLGIYRMQVLGPDRTVMRWLAHRGGAQHHRRWKA
                     EGKREPLPACAVIGADPGTILAAVTPVPDTLSEYQFAGLLRGAKVELVPAKTVPLMVP
                     ANAEIVIEGHVLLDDYADEGPYGDHTGFYNSVEKFPIFQVSAITMRKDPIYLTTFTGR
                     PPDEPSVLGEALNEVFIPLLRQQFPEIVDFWLPPEGCSYRIAVVSMKKAYAGHAKRVM
                     MGVWSYLRQFMYTKWVIVVDDDIDARNWKDVMWAISTRMDPARDITVIENTPIDYLDF
                     ASPESGLGSKIGLDATDKWPPETHREWGRKLGMDNATVEAVTQMWSRLGLPGDGKPVA
                     "
     gene            complement(2588..>3034)
                     /locus_tag="VHN39_18475"
     CDS             complement(2588..>3034)
                     /locus_tag="VHN39_18475"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2818385.1"
                     /translation="PETVREILAHHMALIPTLTLFEVEAKKFGESASDEANDMAAAEQ
                     QLGAYHAAGGEILFGTDVGYTDAVDTAEEYRLMAKAGLNYRAILASLTTAPARRFGYA
                     KHRGRVAPGLAGDLVVLSGDPAQDPTVFARVAATIRDGKVIFRAGP"
BASE COUNT          499 a         1033 c         1029 g          473 t
ORIGIN      
        1 tcggcggcgg gcgcgaatcc cgggtcagag gccagcgcgt tcagcgggtt ggagacgatc
       61 tggcgggcca tggtgaagag cgcgcccttg atgccgccat cgaccttcac cgcgttggcc
      121 ggcgcgctgt tgatcaggcc catctgcacg agcagcgagt gcgaggctgt gcgggtgatc
      181 ttgggcgccg tcggcccgcc gatatagtcc agcgtggcga cataatgatc gcgcacggtg
      241 ctgccggcga tgaacagcgt cgcgccggtc ttgacgccgt tggcctcggc cgccctcagg
      301 tcgtcggggt ccacgatatt gtcgatgatc acattgagca ccgcgccgtt gggggcgggg
      361 tcttcgctga cggcggagaa aaggccgctg gccttcaccg cgtcgaccac cggctgcttc
      421 accagtttgg tcgcctgcag gttgggcgcg cccttggtgt ggaattggaa gagcagctgc
      481 accggctgcg ggtgggcgat caccacccgc ttgtcggccg gtacgtccgg aaggcccgcg
      541 tcaacgaagg aggcggccga ggcgcggcct ccgccgccga ccgccagcat cacggccagc
      601 agcagcgcca gcccccaggc cgacatacgc ccatgacccg ccggcctcgc caacaggcgt
      661 cccaatacgc ttagaaacat cttcaagccc ccgctcgaaa cccctgaatc tgctgcaact
      721 agagcgcgaa gcttgactgt aggcaagagc cccggatgag tgatcgttga tgacttagaa
      781 ttcgtcttcc atcatcgagc ggaattgttc gaagatttcc ttggcgttct cttccgacgg
      841 cagttcggac tcgacctgtg cgcccgtggc ggcctctgcg gccccgcccg tcaggcggcc
      901 gaccaccacg ccgctgcgca ccagcagcac gtcttcgccc ggttcggcgc ccgccagcag
      961 ggcggcgagt ctgggcggca gatcgtcgag atcgatgcgc ttcatggggc ccatcctagc
     1021 gccctcaagc gtgacagggg agccccggga ccctagggag aggcatggcc tacaagtcga
     1081 tgcgcgagtt catgggcaag ctggaggcgg cgggcgagct ggtccgcgtc accgagcctg
     1141 tctccaccgt gcttgagatg accgaaatcc accggcggct gctggcgacc ggcgggccgg
     1201 cggtgctgtt cgagaacgtc atccgcgccg acggcgaacg ctcgccgatg ccctgcctca
     1261 tcaacctgtt cggcaccgtc aagcgcgtgg ccatgggcgt gacgctggag ggtcgcgaac
     1321 gggccacggc ggcggacctg cgcgaggtgg gcgaactgct ggccttcctg cgcgcgccgg
     1381 agccgccgcg cggcctgaag gacgcctggg acatgcttcc gctcgccaag acggtgatgt
     1441 ccatgcgccc ggccatcgtg aagaaggcgc cggtgcagca agtggtctgg acgggcgaca
     1501 agatcgacct gaacaagctg ccgatccaga cctgctggcc gggggagccc gcgccgctga
     1561 tcacctggcc gctggtagtg acaaagggcc cgtcggagac ccgcgaggac gactacaacc
     1621 tcggcatcta ccgcatgcag gttctggggc cggaccgcac ggtcatgcgc tggctcgccc
     1681 accgcggcgg cgcccagcac caccgccgct ggaaggccga aggcaagcgc gagcccctgc
     1741 ccgcctgcgc ggtgatcggc gccgatcccg gcacgatcct ggccgccgtg accccggttc
     1801 cggatacgct ctcggaatac cagttcgcgg gcctgctgcg cggcgccaag gtcgagctgg
     1861 tcccggccaa gaccgtgccc cttatggtcc cggccaacgc cgagatcgtc attgagggtc
     1921 acgtcctgct cgacgactac gccgatgaag ggccctacgg cgaccacacc ggcttctata
     1981 attccgtcga gaagttcccg atcttccagg tcagcgccat caccatgcgc aaggacccga
     2041 tctatctgac caccttcacc ggccgcccgc cggacgagcc cagcgtgctc ggcgaggcgt
     2101 tgaacgaggt gttcatcccg ctcctgcgcc agcagttccc ggagatcgtc gacttctggc
     2161 tgccgcccga gggctgctcc taccggatcg cggtagtgtc gatgaagaag gcctacgccg
     2221 gccacgccaa gcgggtgatg atgggcgtct ggagctacct cagacagttc atgtacacca
     2281 agtgggtgat cgtcgtggac gacgacatcg acgcccggaa ctggaaggac gtcatgtggg
     2341 cgatctccac ccgcatggac ccggcccgcg acatcacggt catcgaaaac acccccatcg
     2401 actatctgga ctttgcctcg ccggagagcg gcctgggctc gaagatcggc ctcgacgcca
     2461 ccgacaaatg gccgccggag acccaccgcg aatggggccg caaactcggc atggataacg
     2521 ccaccgtcga ggcggtcacg cagatgtggt cgcgcctggg cctgccgggg gacggcaagc
     2581 cggtcgccta gggaccggcg cggaagatca ccttgccgtc gcggatcgtc gcggcgaccc
     2641 gggcgaagac ggtcgggtcc tgcgccggat cgccgctcag caccacgaga tcgccggcaa
     2701 gccccggcgc gacgcggccg cgatgcttcg cgtagccgaa gcggcgggcg ggggcggtgg
     2761 tgaggctggc caggatggcg cggtagttga ggccggcctt ggccatcagc cggtactcct
     2821 cggccgtatc gacggcgtcg gtgtagccga cgtcggtgcc gaacaggatc tcgccgccgg
     2881 ccgcgtgata ggcgccaagc tgctgctccg cggcggccat gtcgttggcc tcgtcgctgg
     2941 ccgactcccc gaacttcttg gcctccacct cgaagagggt cagcgtcggg ataagcgcca
     3001 tatggtgcgc caggatctcg cgcaccgtct ccgg
//
LOCUS       DATAJL010000979         3707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127155,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000979 DATAJL010000000
VERSION     DATAJL010000979.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127155"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..503)
                     /locus_tag="VHN39_18480"
     CDS             complement(30..503)
                     /locus_tag="VHN39_18480"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008175 - tRNA methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEX2818386.1"
                     /translation="MRLALFQPDIPQNLGAALRLGACLGVPVDVIEPCGFPLSDAGVR
                     RAAMDYGALAEMKRHASWADFLKAPEREQGRLLLFTTKGAAPLHGFEFRAGDTLLFGR
                     ESSGAPDEVHAAAGARLFIPLAPGARSLNLTVSAAIALSEALRQTNGFPSAAPRG"
     gene            705..1235
                     /gene="petA"
                     /locus_tag="VHN39_18485"
     CDS             705..1235
                     /gene="petA"
                     /locus_tag="VHN39_18485"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEX2818387.1"
                     /translation="MADPHDPDKDPNRRDFIHIAAGVAAVGLVGGLAWPFIDQMNPAG
                     DTLALSSIEYDISKIDVGGHVTIKWRGKPLFIRNRTPAEIAAAIKDDHADLRDPATDE
                     SRHKPGKAQWLILIGVCTHLGCVPTFNGGEYGGWFCPCHGSVYDTSGRIRKGPAPLNL
                     TVPDYVFLTDTKVKVG"
     gene            1240..2559
                     /locus_tag="VHN39_18490"
     CDS             1240..2559
                     /locus_tag="VHN39_18490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEX2818388.1"
                     /translation="MSGHSTYEPKSGLERWLDTRLPLIRFANDTVVTFPTPKNLNYWW
                     TFGGVLSLMLGLQIVTGIILAMHYVPHVDMAFASVQRIKRDVNYGWLIQGMHANGASM
                     FFLAAYIHMFRNLYYGSYKAPREVLWILGCVIYLLMMATAFFGYVLPWGQMSFHGAVV
                     ITNLIGAIPIVGPSITTWLWGGFAVDDPTLNRFFSLHYLVPFMIAGVVGLHIWALHVP
                     GNNNPTGVNVTSEADTVPFHPYYTVKDGFAISVFLIMYAVFVFYLPDALGDAANYVQA
                     NPLVTPAHIVPEWYLLPFYAILRAVPNKLAGVIAMGAAIGTMFVLPWLDTSKVRSMRY
                     RPTARMYYFIFVFTCIVLGFCGAHAPDDPVIPGVSGPQFLDSNLNSFVWLSRVSALFY
                     FAYFWAVTPLLGLFETPLPVPESISSPVLSHPAATPAGAVATPEKRG"
     gene            2565..3407
                     /locus_tag="VHN39_18495"
     CDS             2565..3407
                     /locus_tag="VHN39_18495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HEX2818389.1"
                     /translation="MLRKGFAFAALGLALMAGPALAATTQVEPKDIHWSYEGPFGKFD
                     KAQLQRGFKVYREVCSSCHSMDLMYFRNLGQKGGPFYDPKYPNPNNNPYVKSLAHDIQ
                     IKDIDQDTGDPINRPGMPPDRFAAPFPNEPAARASNSGALPPDLSVMAKAREGGPAYV
                     YSILTGYVPPPKGMTVPADKYYNPYMPGDMSSFMAKGAKVPEGGFISMPPPLVDGKVT
                     FDDGTKSTVQNEARDVSAFLAWAAEPKMEERKAFGLGAMIYLLIFSVLLYFSYKKIWK
                     NVAH"
     gene            3525..3704
                     /locus_tag="VHN39_18500"
     CDS             3525..3704
                     /locus_tag="VHN39_18500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818390.1"
                     /translation="MLGKATRRGLLSAGVAALVAPSAMAQPAKSRLILLGTGGGPTPK
                     PNRSAPAQLSQIRAP"
BASE COUNT          619 a         1259 c         1193 g          636 t
ORIGIN      
        1 gtggacgggg cgttggacat ggacgcttgc tagcccctgg gggcggcgct tggaaagcca
       61 ttggtctgcc tgagcgcctc ggaaagcgcg atcgccgcgc taaccgtgag gttcagcgac
      121 cgggcgccgg gcgccagggg aatgaacagg cgggcgccgg cggccgcatg gacctcatcg
      181 ggggcgccgg agctctcgcg gccaaacagc agggtgtcgc cggcgcggaa ttcgaatccg
      241 tgcaggggcg ccgcgccctt ggtggtgaag agcagcaggc ggccctgctc gcgctcgggg
      301 gccttaagga aatcggccca gctggcgtgg cgtttcatct cggcgagcgc cccataatcc
      361 atggccgcgc ggcgcacgcc ggcgtcggaa agcgggaagc cgcagggctc gatcacgtcc
      421 actgggacgc ccagacaggc ccccagacgc agggcggcgc cgaggttttg cggaatgtcc
      481 ggttgaaaaa gggccaaacg cattctaagc gatccgcgac gggttaggcc gggctgagaa
      541 acgaatcacg gaagatgtct cgcaaagcgc agcgggggct tccggtcggt gaggtctgtg
      601 cgagcccgtt gtgacgatta agcccttacc agagcctctg gttgggtcca aagacgtagg
      661 ctcccgcaca cagcggcgga cctcgaaacg aagggtagct ttaggtggcc gatccgcacg
      721 acccggacaa ggacccgaac cggcgcgact tcattcacat cgccgccggc gtcgccgccg
      781 tgggcctggt gggcgggctc gcctggccgt tcatcgacca gatgaacccg gccggcgaca
      841 cgctggcgct ctcctccatc gaatacgaca tctcaaagat cgatgtgggc gggcacgtga
      901 ccatcaaatg gcgcggcaag ccgctgttca tccgcaaccg cacgcccgcc gagatcgctg
      961 cggcgatcaa ggatgaccac gccgacctgc gcgatccggc caccgacgag agccgccaca
     1021 agcccggcaa ggcccagtgg ctgatcctga tcggcgtctg cacccatctg ggctgcgtgc
     1081 caaccttcaa cggcggcgaa tatggcggct ggttctgccc ctgccacggc tcggtctacg
     1141 acacctccgg gcggatccgc aaagggcccg cgccgctgaa cctgacggtg ccggactacg
     1201 tcttcctcac ggacaccaag gtcaaggttg gctgatcaga tgagcggaca ttcaacctac
     1261 gagccgaaat cgggccttga gcgctggctg gacacgcggc tgccgctgat ccggttcgcc
     1321 aacgacaccg tcgtgacgtt cccgacgccg aagaacctga attactggtg gaccttcggc
     1381 ggcgtgcttt cgctgatgct ggggctgcag atcgtcaccg gcatcatcct ggcgatgcac
     1441 tacgtgccgc atgtggacat ggccttcgcc tcggtccagc ggatcaagcg cgacgtcaac
     1501 tacggctggc tgatccaggg catgcacgcc aacggcgcct cgatgttctt cctggccgcc
     1561 tacatccaca tgttccgcaa cctctactac gggtcctaca aggcgccgcg ggaggtgctg
     1621 tggatcctgg gctgcgtgat ctacctcctg atgatggcca ccgccttctt cggctacgtc
     1681 ctgccctggg gccagatgag cttccacggc gcggtggtga tcaccaacct gatcggcgcc
     1741 atccccatcg tgggcccgtc gatcaccacc tggctgtggg gcggcttcgc ggtcgatgac
     1801 ccgacgctga accgcttctt ctcgctgcac tacctggtgc cgttcatgat cgccggcgtc
     1861 gtgggcctgc acatctgggc gctgcacgtg ccggggaaca acaacccgac cggcgtgaac
     1921 gtgacgtccg aggccgacac cgtgcccttc cacccgtact acacggtgaa ggacgggttc
     1981 gcgatttcgg tcttcctgat catgtacgcg gtgttcgtct tctacctgcc cgacgccctg
     2041 ggcgacgcgg ccaactacgt tcaggccaac cccttggtga ccccggccca cattgtgccg
     2101 gagtggtacc tgttgccgtt ctacgcgatc ctgcgggcgg tcccgaacaa gctcgctggg
     2161 gtcatcgcca tgggcgcggc gatcgggacg atgttcgtcc tgccctggct ggacacctcg
     2221 aaggtgcgct ccatgcgcta ccggccgacg gcgcggatgt actacttcat cttcgtcttc
     2281 acctgcatcg tgctgggctt ctgcggggcg catgcgccgg acgatccggt gatcccgggc
     2341 gtctcaggtc cgcagttcct cgactccaac ctcaacagct tcgtgtggct gagccgcgtc
     2401 tcggcgctgt tctacttcgc ctacttctgg gcggtcacgc cgctgctggg gctgttcgag
     2461 acgcccctgc cggtgccgga atcgatctcc tcgcctgtcc tgtcccaccc cgccgccacg
     2521 cccgccggcg cggtcgcgac gcctgaaaag aggggttgag cctgatgctg cgcaaaggtt
     2581 tcgcgttcgc ggcgctcggg ctggccctga tggcggggcc cgctttggcc gccaccaccc
     2641 aggtcgagcc caaggacatc cactggtcct acgagggtcc gttcggcaag ttcgacaagg
     2701 cccaactcca gcggggcttc aaggtctatc gggaggtctg ctcgtcctgc cactccatgg
     2761 acctgatgta cttccgcaac ctcggtcaga agggcgggcc gttctacgac ccgaagtacc
     2821 cgaacccgaa caacaacccc tatgtgaagt ccctggccca cgacatccag atcaaggata
     2881 tcgatcagga tacgggggac ccgatcaacc gtccgggcat gccgcccgac aggttcgccg
     2941 cgcccttccc gaacgagccg gcggcccggg cgtccaacag cggcgccctg ccgcctgacc
     3001 tttcggtcat ggccaaggcg cgcgagggcg gaccggccta cgtctattcg atcctgaccg
     3061 gctacgtccc gccgccgaag ggcatgaccg tgcccgccga caagtactac aacccctata
     3121 tgccgggcga catgagctcg ttcatggcca agggcgccaa ggttccggag ggcggcttca
     3181 tctccatgcc gccgccgctg gtcgacggta aggtcacctt cgacgacggc accaagtcga
     3241 cggtgcagaa cgaggcccgc gacgtctcag ccttcctggc ctgggccgcc gagcccaaga
     3301 tggaagagcg caaggccttt ggcctgggcg cgatgatcta tctgctgatc ttctcggtcc
     3361 tgctctattt cagctacaag aagatctgga agaacgtcgc ccactagggc cgacggacag
     3421 ccacgagacc caagggcctc ggcatcagcc ggggcccttt ttcgtgcagc ttgttcgggt
     3481 ccgcgccgtc tgacctactg agccctcggc gggggagcgt acacatgctg ggaaaagcga
     3541 cgcggcgggg cctcctgagc gccggcgtcg cggcgcttgt cgcgccgtcg gcgatggccc
     3601 aacccgcgaa gtcgcggctg attctgctgg gcaccggcgg gggcccgacg ccgaagccca
     3661 accgttcggc gccggcccag ctcagccaga tcagggcgcc gtagtcg
//
LOCUS       DATAJL010000980         3508 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127169,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000980 DATAJL010000000
VERSION     DATAJL010000980.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3508
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127169"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VHN39_18505"
     CDS             complement(<1..239)
                     /locus_tag="VHN39_18505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818391.1"
                     /translation="MPQDVSPNVARGGLLSSDPLIALLERAHVTRSSLIRVTGPSGLS
                     AMLWLCRHGYEQVGYLKPGAGPHEQPEALIVAHTC"
     gene            654..2366
                     /gene="kdpA"
                     /locus_tag="VHN39_18510"
     CDS             654..2366
                     /gene="kdpA"
                     /locus_tag="VHN39_18510"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013078983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEX2818392.1"
                     /translation="MDPRGWAEIALTLAVTVALAWPLGIYMARVWQGEKTWLDPILKP
                     VERLVYAGCGVKPEKGQGWIAYAMSFLAFSVASFIVLYLILRFQNLLPLNPQGFAGCS
                     PDLAFNTAISFITNTNWQSYVPETTLSTFSQMAGLTSHNFLSAAAGISVAAALARAFA
                     ANRAENLGDFWVDLTRISLYILLPFSIVIALVFVALGEPQTLLAHATAHTVEGAKQTI
                     ALFPVASQEAIKQFGTNGGGLFNANSAHPFENPNAITNFIEIVIMNVLSYACAIAFGR
                     IVLARRDARALVAVMAIFVFVAAGVVYAAETQPAPALVAAHADASVNMEGKEVRFGAP
                     STAIWTAATTGASDGGVNAMHDSYMPLAGGMAMFMIQLGEIVPGGVGSGLYGMIVLAL
                     ISVFVAGLMVGRTPEYLGKKVEAREVKYAMLAVLILTVSILGFAGVAAVVPVALKGLE
                     NSGPHGLSEILYAYSSATGNNGSAFAGLSANVPYWNATLGVAMLLGRFAYAIPVLAIA
                     GSMAAKPKLGATAGTFPTDGPLFIGLLIGVIVIMGGLQYFPALALGPIVEHFQVLHAV
                     AAAR"
     gene            2398..>3508
                     /locus_tag="VHN39_18515"
     CDS             2398..>3508
                     /locus_tag="VHN39_18515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004615358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
                     /protein_id="HEX2818393.1"
                     /translation="MTTATAPLGEGRRKATTLVGSFSGAILGRATRDSFIKLDPRKLT
                     GNPVIFATWIVAVLATMSTVLAIKDGTGWGFALQIALWLWATVLFANFAESVAEGRGK
                     AAADSLRATRVTTKAKLLNAAGAVVLTSANELKVGHIVLVEAGDVVPSDGEIVEGIAS
                     VNEAAITGESAPVIRESGGDRSAVTGGTTVVSDWLKVRITSEAGSTFLDRMIAMVEGA
                     DRRKTPNEIALAVLLAGLTLIFLIAVVTLLGLGTYSGVKIDPMVLGALFICLIPTTIG
                     GLLSAVGIAGMDRLLKFNVLATSGRAVEAAGDVDTLLLDKTGTITFGNRMATELIAAP
                     GVRPEMMLRATLLASLGDETPEGRSIVELARNQGLT"
BASE COUNT          541 a         1214 c         1121 g          632 t
ORIGIN      
        1 tcacaggtgt gcgcgacgat cagggcttcg ggctgctcgt gcgggccggc gcccggcttg
       61 aggtagccga cctgctcgta gccatgccgg cagagccaga gcatggccga aaggccgctc
      121 ggaccggtga cccggatcag gctcgacctg gtgacgtgcg cacgctccag caaggctatg
      181 agcgggtcgc tgctgagcaa gccaccgcgg gcgacattgg gcgaaacgtc ttggggcatt
      241 gaaacgcgag actccatttg cggagccgca tgcagcgact ccttggacgt ctgtagtttc
      301 gcgcgactgc ccgtaagcgt tcgatacgta agtcgagctt gtggataagt gaaacgtcaa
      361 ggtcggggac ctcggcgcag acctcatcct tatgtttcct tgatgtccca ggatgggttc
      421 cgaatggagc ccttatgctg aaggctcgta gggtccagtt ctggtttgag gactggagct
      481 tcgaatgctc gatatcatct acattctcgg cggcgtggcg atctttgtcg tcttcgccgc
      541 ctacgcctac agcctgaggc gcatctgatg cttgccaaca tcatctgggg cgtcggcgcc
      601 ctcatcatcg gcggctacat gatcgtcgcc ctccttaagc cggagaagtt ctgatggatc
      661 cgcggggctg ggcggagatc gccctcacac tcgccgtgac ggtcgcgctg gcgtggccgc
      721 tcggcatcta catggcccgc gtctggcagg gcgaaaagac ctggctggat ccgatcctga
      781 agccggtcga acggctggtc tacgccggct gcggcgtgaa gcccgagaag ggccagggct
      841 ggatcgccta tgcgatgagc ttcctggcct tctcggtcgc cagcttcatc gtcctctacc
      901 tgatcctgcg gttccagaac ctgctgccgc tcaacccgca ggggttcgcc ggctgctcgc
      961 cggacctggc cttcaacacc gcgatcagct tcatcaccaa cactaactgg cagtcctacg
     1021 tgccggagac gacgctctcg accttctcgc agatggccgg cctgacctcg cacaacttcc
     1081 tctcggccgc cgccggtatc tcggtcgccg cggccctggc gcgcgccttc gcggccaacc
     1141 gggccgagaa cctcggcgac ttctgggtcg acctgacccg gatcagtctc tacatcctgc
     1201 tgccgttctc gatcgtcatc gcgttggtct tcgtggcgct gggcgaaccg cagaccctgc
     1261 tggcccatgc caccgcccac acggtggagg gcgccaagca aaccatcgcg ctcttcccgg
     1321 tcgccagcca ggaggcgatc aagcagttcg gcaccaacgg cggcgggctc ttcaacgcca
     1381 actcggccca cccgttcgag aaccccaacg cgatcacgaa cttcatcgag atcgtgatca
     1441 tgaatgtgct gagctacgcc tgcgcgatcg cctttggccg catcgtgctg gccaggcgcg
     1501 acgcccgcgc cctggtggcg gtgatggcga tcttcgtgtt cgtggcagcc ggcgtcgtct
     1561 acgccgccga gacccagccg gcgccggcgc tggtcgccgc ccatgccgac gcttcggtca
     1621 acatggaagg caaggaggtc cgcttcggcg cgccgtccac cgccatctgg accgcggcca
     1681 ccaccggcgc ctccgacggc ggcgtcaacg ccatgcacga cagttacatg ccgctcgccg
     1741 gcggcatggc gatgttcatg atccagctgg gcgagatcgt gcccggcggc gtcggatccg
     1801 gcctctacgg catgatcgtg ctggcgctga tctcggtgtt cgtggccggc ctgatggtcg
     1861 ggcgcacacc ggagtacctg ggcaagaagg tggaggcccg cgaggtcaag tacgccatgc
     1921 tggcggtgct gatcctgacg gtctcgatcc tgggcttcgc cggtgtcgcc gctgtcgtac
     1981 cggtcgccct gaaggggctg gagaattctg ggccgcacgg cctgtcggag attctctacg
     2041 cctactcgtc ggccaccggg aacaacggct cggccttcgc aggcctttcg gccaacgtgc
     2101 cttactggaa cgccaccctc ggcgtcgcca tgctgctcgg ccgcttcgcc tacgccatcc
     2161 cggtgctggc aatcgccggc tccatggcgg ccaagccgaa gctcggcgcc accgccggca
     2221 ccttccccac cgacggcccg ctgttcatcg gcctgctgat cggggtgatc gtgatcatgg
     2281 gcggcctgca gtacttcccc gccctcgccc tcggcccgat cgtggagcac ttccaggtgc
     2341 tgcacgccgt ggccgcggcc cgctgaaacc cctgttgaaa gcttcgggga tcctgacatg
     2401 acaaccgcaa ccgcacctct cggggaaggc cgccgcaagg ccaccaccct cgttggcagc
     2461 ttctccggcg cgatcctggg ccgcgccacc cgagactcct tcatcaagct cgatccgcgc
     2521 aagctgaccg gcaatccggt gattttcgcc acctggatcg tcgcggtgct ggccacgatg
     2581 tcgactgtgc tcgccatcaa ggacggcacg ggctggggct ttgccctgca gatcgcgctc
     2641 tggctctggg cgacggtgct tttcgccaac ttcgccgaga gcgtggccga gggccgaggt
     2701 aaggccgccg ccgatagcct gcgggccacg cgggtgacca ccaaggccaa gctgctcaac
     2761 gcggcgggcg cggtggtcct cacctcggcc aacgagctga aggtcggcca tatcgtcctc
     2821 gtggaggccg gcgacgtcgt gccttcggac ggcgagatcg tcgagggcat cgcctcggtc
     2881 aacgaggccg ccatcaccgg cgagagcgca ccggtcatcc gcgagagcgg cggcgaccgt
     2941 tccgccgtca ccggcggcac cacggtggtc tccgactggc tgaaggtgcg catcacgtcg
     3001 gaagccggtt cgaccttcct cgaccggatg atcgccatgg tcgaaggcgc cgaccgccgg
     3061 aagactccaa acgagattgc gcttgcggtg ctcctagcgg gcctgactct gatcttcttg
     3121 atcgccgtgg tgaccctgct gggtctcggc acctactccg gcgtcaagat cgacccgatg
     3181 gtgctgggcg ccctattcat ctgcctgatc cccacgacca tcgggggcct gctctcggcg
     3241 gtcggcatcg ccggcatgga ccgcctcttg aagttcaacg tcctggccac ctccggccgg
     3301 gctgtggagg cggccggcga cgtcgacacc ctgctgctcg acaagaccgg caccatcacc
     3361 ttcggtaacc gcatggccac cgagctgatc gccgcgccgg gcgtgcggcc cgagatgatg
     3421 ctgcgcgcga ccctgctggc gtccctgggc gacgagacgc cggaaggtcg ctccatcgtc
     3481 gaactggccc gcaaccaggg cctgacac
//
LOCUS       DATAJL010000981         4464 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127173,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000981 DATAJL010000000
VERSION     DATAJL010000981.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4464
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127173"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..621)
                     /locus_tag="VHN39_18520"
     CDS             complement(<1..621)
                     /locus_tag="VHN39_18520"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2818394.1"
                     /translation="MLRRALIFVAVLAVVAAVAVWFLIAPRMLPASEVAAGYHPDLAN
                     GQAMFIAGNCSACHATPGQDDRTQLAGGLKLKSPFGTFVTPNISPDAKFGIGGWSELQ
                     FVNAMKRGVDDDGRHLYPAFPYSAYSLMKTSDVRDLFAYLKTLPAVARATAPHELKFP
                     FNLRPAVGFWKLLYFKPHEFVADPKQSAAWNRGAYLAEGPAHCAVWH"
     gene            complement(653..1108)
                     /locus_tag="VHN39_18525"
     CDS             complement(653..1108)
                     /locus_tag="VHN39_18525"
                     /inference="COORDINATES: protein motif:HMM:NF013487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEX2818395.1"
                     /translation="MKRASTVLWAAAGGACLALSLGFAAVSAGNPMDERQATMKAVGQ
                     SMKEGAGLNSAATFDAAKTKTAMESVAAAAKKLKGLYPPGSGADPKSAADPKIWENKA
                     DFEKKLAEMGAAATAASKTTTADTFKPAYAALGATCKSCHDVYRKKKTT"
     gene            complement(1230..1604)
                     /locus_tag="VHN39_18530"
     CDS             complement(1230..1604)
                     /locus_tag="VHN39_18530"
                     /inference="COORDINATES: protein motif:HMM:NF012264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEX2818396.1"
                     /translation="MQTRFLAAASLLAATLSATDALAQAPATPPPLFAVCQACHESTA
                     KAGPSVGPNLFGVGGRKAGSAADYDYSDAMKASATVWSADTLTTFLTDPAKTVPGNKM
                     DYPGNDEATSKALADYLMTLKP"
     gene            complement(1665..4010)
                     /locus_tag="VHN39_18535"
     CDS             complement(1665..4010)
                     /locus_tag="VHN39_18535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013077251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEX2818397.1"
                     /translation="MAGKSASGAANKADMIRWLFENSRDLMQVIGADGRFKLVNGAWK
                     PLLGWDEHELVGERALDFFHPDDIAGVRDGIRALAPGEVTENPMRVRRRDGDWGCFAS
                     RTQKMPDGELIVSMRDATEERARAEELEETRRTRRLLSEAAGIGAWVYEPEGNRIEWS
                     RDLLSLTGYASDQISNPDQFYAIVHPADRKHTEDLMGVAVITGEGATLEHRLKVGGRW
                     TSWRATFRTEPRPGGVFALRGISENITELAKARDAARRGELKMQKAQREATASAQRLA
                     VALEAATAGVYEIDHVGKSFWASPEFVKITGQGDASYQQATELRFPGFHPDDLDFVRE
                     SFRSLHTGGGQAGAFDARIVRPDGETRWIRVSHHLKVGSNGRWLKAVGLIQDFDERKR
                     QEIALQEAQQAAEAAGEAKSAFLANMSHEIRTPMNGVMGVLHLLKAEKLTEDGRHMLE
                     EALNCGQMLAELLNDVIDFSKIEAGMLELADEPLDPRGVLEGVVRLLRPQADSKGLLL
                     RLDCDPNLGWVRSDPVRMRQALFNLVGNAVKFTERGSITVRCTAPRPGFLRYDVIDTG
                     VGIPAEAQDRIFQRFDQGDASTTRKFGGSGLGLAITKKLAEMMSGAVGFTSEEGLGSN
                     FWLEVKAKPAEAVAATNETLEPVLDGLRVLVVEDNPTNRMIATKLLESLGCHVTTAAD
                     GYLGVEAASIGDFHLILMDVQMPGIDGMEAARRIRALGGAAAETPIVALTANVLAHQR
                     RAYLDAGMDGVVGKPISPGVLLREIARLSAPAQEAEETEAA"
     gene            complement(4098..>4464)
                     /locus_tag="VHN39_18540"
     CDS             complement(4098..>4464)
                     /locus_tag="VHN39_18540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005170900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818398.1"
                     /translation="DYTMTRKVFGKPLAARQLVQKKLADMQTEIALGFEGALALGRLI
                     DEGAWVPEAISLMKRNNCGKALAIAREARDIHGGNGISGEYHVMRHAANLETVNTYEG
                     AHDVHALILGRAITGENAF"
BASE COUNT          664 a         1467 c         1570 g          763 t
ORIGIN      
        1 gtgccacacg gcgcagtggg ccggcccttc ggccagatag gcgccgcggt tccaggcggc
       61 ggactgcttg gggtcggcca cgaactcatg cggcttgaaa tagagcagct tccagaaccc
      121 gacggcgggc cggaggttga aggggaactt gagctcgtgt ggggccgtcg ccctggccac
      181 cgccggcagg gtcttcagat aggcgaagag gtcgcgcaca tccgacgtct tcatcaggct
      241 gtaggccgag taggggaagg ccggatagag atgccgtcca tcgtcgtcga cgccgcgctt
      301 catggcgttg acgaactgta gctcgctcca gccgccgatg ccgaacttgg cgtcgggcga
      361 gatgttgggc gtgacgaagg tcccgaaggg cgacttcagc ttcaggccgc cggccagctg
      421 ggtgcggtcg tcctggccgg gcgtggcgtg gcaggccgag cagttgccgg cgatgaacat
      481 cgcctggccg ttggcgaggt cggggtgata acccgccgcg acctccgagg ccggcagcat
      541 cctgggcgcg atcaggaacc agacggcgac cgccgccacg acggccagga cggccacaaa
      601 gatcagtgcg cgcctgagca taccggaaac ccccgacccc gaccttgaag gctcaggtcg
      661 tcttcttctt gcgatagacg tcgtggcagg acttgcaggt ggcgccgagc gccgcatagg
      721 ccggcttgaa ggtgtccgcc gtggtggtct tgctggcggc ggtggccgcc gcccccatct
      781 cggccagctt cttttcgaag tcggccttgt tctcccagat cttcggatcg gccgccgact
      841 tcgggtccgc gccgctgccg ggcgggtaga ggcccttcag cttcttggcg gcggccgcga
      901 ccgactccat cgcggtcttg gtcttggccg cgtcgaaggt ggccgccgaa ttgagccccg
      961 cgccttcctt catggactgg ccgacggcct tcatggtcgc ctggcgctcg tccatcggat
     1021 tgccggctga gaccgccgcg aagccgaggc tcagcgccag gcaggcgccg ccggccgcgg
     1081 cccatagaac agtcgaagcg cgcttcatcc aaagctccca gcagcacgat gttattgcgt
     1141 atctcagcgg actaccgcgc ccgcgcggat gcgacaaggg tcaacgcccg gccgaacgga
     1201 acgtaccgaa gtttcgaaaa actgccttgt tagggcttca gcgtcatcag gtagtcggcg
     1261 agcgccttgg aggtcgcctc gtcattgccg gggtagtcca tcttgttgcc ggggacggtc
     1321 ttggcgggat cggtgaggaa ggtggtgagc gtgtcggcgc tccagacggt ggccgacgcc
     1381 ttcatggcgt cggagtagtc gtagtccgcc gcgctgccgg ccttgcggcc gccgactccg
     1441 aacaggttcg gaccgacaga gggccccgcc ttcgccgtgc tctcgtgaca ggcctgacag
     1501 accgcgaaca gcggcggcgg cgtcgccgga gcctgggcga gcgcgtcggt ggccgaaagg
     1561 gtggcggcga gcaggctggc ggcggcaagg aaacgggtct gcatgggcgc tcctgaaggg
     1621 ttcggagcaa agcactagca ttcgttcgcg agcggttgga agcctcaggc ggcctcggtt
     1681 tcctcggcct cttgcgccgg cgcgctgagg cgggcgattt cgcgcagcag gacgccgggc
     1741 gagatgggct ttccgaccac cccgtccatg ccggcgtcaa gataggcgcg gcgctggtgg
     1801 gccagcacat tggcggtgag ggccacgatc ggggtctcgg ccgcggcgcc gcccagggcg
     1861 cggatgcggc gggccgcctc catgccatcg atgccgggca tctggacgtc cataaggatc
     1921 aggtggaaat cgccgatgga ggccgcctcg acacccagat aaccgtcggc ggcggtggtg
     1981 acatggcagc cgaggctctc caggagcttg gtggcgatca tccggttggt ggggttgtcc
     2041 tcaacaacca gcacgcgcag gccgtcgagc accggctcca gggtctcgtt ggtcgcggcg
     2101 accgcctcgg ccggcttggc cttgacctcc agccagaagt tcgaacccag accctcctcg
     2161 gaggtgaagc ccacggcgcc ggacatcatc tcggccagct tcttggtgat ggcgaggccc
     2221 aggcccgagc cgccgaactt gcgggtggtg gacgcatcgc cctggtcgaa acgctggaag
     2281 attcggtcct gcgcctcggc cgggatgccg acgccggtgt cgatgacgtc gtagcgcagg
     2341 aagccggggc gcggggcggt gcagcgcact gtgatcgagc cgcgctcggt gaacttcacc
     2401 gcattgccca ccaggttgaa cagcgcctgg cgcatgcgca ccgggtcgga gcgcacccag
     2461 cccaggttcg ggtcgcagtc gagccgcagc aacaggccct tgctgtcggc ctgcggcctg
     2521 agcaggcgca ccacgccctc cagcacgccg cgcgggtcca gaggctcgtc ggcaagctcg
     2581 agcatgccgg cttcgatctt cgagaagtcg atgacgtcgt tgagcagttc ggccagcatc
     2641 tgcccgcagt tcagggcctc ttcgagcatg tgccggccgt cctcggtcag cttctcggcc
     2701 ttcagaaggt gcagcacgcc catgacgcca ttcatcggcg tgcggatctc atggctcata
     2761 ttggccagga aggctgactt ggcctcgccc gcggcctcgg cggcctgctg ggcctcctgc
     2821 agggcgattt cctggcgctt gcgctcgtcg aagtcctgga tcaggccgac ggccttcagc
     2881 cagcggccgt tgctgcccac tttcaggtgg tgcgagacgc gaatccagcg ggtctcgccg
     2941 tcgggccgga cgatccgcgc atcgaaggct ccggcctgac ccccgccggt gtgcagcgag
     3001 cggaacgact cccgcacgaa gtccagatcg tcgggatgga agcccgggaa gcgcagttcg
     3061 gtggcctgct ggtagctggc gtcgccctga ccggtgatct tcacgaactc cggcgaggcc
     3121 cagaaggact tgcccacgtg gtcgatctcg tagaccccgg cggtggcggc ttcgagcgcc
     3181 acggccaggc gctgggcgct cgcggtcgcc tcgcgctggg ccttctgcat cttcagctcg
     3241 ccgcgccggg ccgcgtcgcg ggccttggcg agctcggtga tgttctcgga aatgccgcgc
     3301 agggcgaaca cgccgccggg gcgtggctcg gtgcggaagg tggcgcgcca ggaggtccag
     3361 cggccgccca ctttcaggcg atgctccagc gtggcgccct cgccggtgat caccgcgacg
     3421 cccatcaggt cctcggtgtg cttgcgatcg gcggggtgga cgatggcgta gaactggtcg
     3481 ggattgctga tctgatcgga ggcgtagccg gtcagcgaca gcagatcccg cgaccactcg
     3541 atgcggttgc cctccggttc gtagacccag gcgccgatgc cggccgcctc gctcagcagt
     3601 cggcgggtgc ggcgggtttc ttccagctcc tcggcgcggg cgcgctcttc ggtggcgtcg
     3661 cgcatgctca cgatgagctc gccgtccggc attttctggg tgcgcgaggc gaagcagccc
     3721 caatcgccgt cgcggcgcct cacgcgcatc gggttttcgg tgacctcgcc gggggcgagc
     3781 gcgcgaatgc cgtcacggac accggcgata tcgtcgggat ggaagaaatc cagtgcgcgc
     3841 tcgccgacca actcgtgctc gtcccagccc agcagcggct tccaggctcc attgacgagc
     3901 ttgaagcggc catcggcgcc gatgacctgc atgagatcgc ggctgttctc gaacagccag
     3961 cggatcatgt cagccttgtt ggccgcgccc gacgcgcttt ttccggccat ggacgttgtg
     4021 cccccacaga tcgcgagaga gcataatctc cagacgtaaa cgtaacgttg gtcgccggct
     4081 gggcccgtta tcgcgcccta gaacgcgttt tccccagtga tggcccggcc caggataagc
     4141 gcgtggacgt cgtgcgcgcc ctcgtaagtg ttcacggttt ccaggttcgc ggcgtggcgc
     4201 atcacatggt actcgccgga aatgccgttg ccgccgtgga tgtcgcgggc ctcgcgggcg
     4261 atggccagcg ccttgccgca attgttgcgc ttcatcaggc tgatggcctc gggaacccag
     4321 gcgccctcgt cgatcagccg gcccagcgcc agcgcgccct cgaagcccag ggcgatctcg
     4381 gtctgcatgt cggcgagctt cttctgcaca agctggcgcg cggcgagggg ctttccgaac
     4441 accttgcggg tcatggtgta gtcc
//
LOCUS       DATAJL010000982         1644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127226,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000982 DATAJL010000000
VERSION     DATAJL010000982.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127226"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1494
                     /locus_tag="VHN39_18545"
     CDS             <1..1494
                     /locus_tag="VHN39_18545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818399.1"
                     /translation="TQRFFDQGVNLLFGFNHAEAIRSFREAARLDPDCAICWWGVAVA
                     LGPNINLPMPDDAVAPAWQALGRARALEVKASPEERDWIEALAARYRSNPKADRKALD
                     EAYARAMSKLWRAYPDDLDAGVFWAEAMMDTQPWDYWEADGKTPKGHGAEIVATLESV
                     IRREPDHPGALHLYIHAVEASTTPERAEAAADRLLPLMPDAGHIVHMPSHIYYRVGRY
                     GDAVRVNERAAAVDEAYIAACKTQGFYPAGYYGHNIHFLWTSSEMEGRYHAALDASRR
                     LVKAVDAVEFAKAMPFGELFVFTPVATLLRFGQWRAILAEPPPPDGLELDLAVWLYAR
                     GFAHANLGDQAAARNDRDRLAKLIFADYSRYDPVGIPATRMVDLSLALLDGEIDRTSG
                     RLSDAVAHFRNAAVLERGLPYTEPPYWHQPVSHILGAALIQDRRPAEAEAVYRESLKT
                     YRADGWALFGLAQALQAEGRRDEATKTRRAFGQAWALADVKLTASRF"
BASE COUNT          257 a          554 c          561 g          272 t
ORIGIN      
        1 acacagaggt tcttcgatca gggcgtcaac ctgctgttcg ggttcaacca cgccgaggcg
       61 atccgctcgt tccgcgaagc ggccaggttg gatcccgact gcgccatctg ctggtggggc
      121 gtggccgtcg ccctcggccc caacatcaat cttccgatgc cggacgacgc ggtggcgccg
      181 gcctggcagg cgctcggccg cgcgcgcgcc ttggaggtca aggcgtcgcc ggaagagcgc
      241 gactggatcg aggcgctggc cgcgcgctac cgctccaacc ctaaggccga tcgaaaggcg
      301 ttggacgaag cctacgcccg agccatgtcg aagctctggc gcgcgtatcc cgacgacctg
      361 gacgccggcg tgttctgggc cgaggccatg atggacaccc agccgtggga ctattgggag
      421 gccgacggca agacgccaaa gggtcatggc gcggagatcg tggcgactct ggagagcgtg
      481 atccgccgcg agcccgatca tcccggcgcg ctgcatctct atatccatgc ggtggaggcc
      541 tccaccacgc cggagcgtgc cgaggccgcc gccgaccgcc tgcttcccct gatgccggac
      601 gccggccaca tcgtgcacat gccttcgcac atctactatc gggtcggacg ctacggcgac
      661 gcggtgcgcg tcaatgaacg cgccgccgcc gtcgacgagg cctatatcgc cgcctgcaag
      721 acccagggct tctatccggc cggttactac ggtcacaata tccacttcct gtggacctct
      781 tcggagatgg agggccgcta tcacgccgcg ctcgacgcct cacgccggct ggtcaaggcg
      841 gtggatgcgg tagagttcgc caaggcgatg ccgttcgggg agctttttgt cttcaccccc
      901 gtggccaccc tgctgcgctt cggccaatgg cgcgccatcc tggccgagcc gccgcccccc
      961 gatgggctcg agctggacct tgccgtgtgg ctctatgcgc gcggtttcgc ccacgccaat
     1021 ctgggcgatc aggcggcggc gcggaacgat cgcgatcgct tggcgaagtt gattttcgcc
     1081 gactacagcc gctatgaccc ggtcggcatc cccgcaactc ggatggtcga tctgtcgctc
     1141 gccttgctgg acggcgagat cgaccgcacg tccgggcgcc tgagcgatgc cgtggcccat
     1201 ttcaggaacg cggcggtgct ggaacggggc cttccctata ccgagccgcc ctattggcac
     1261 caaccggtca gccacatcct gggcgccgcc ctgatccagg atcgccggcc ggcggaagcc
     1321 gaggcggtgt atcgcgaaag cctgaaaacc taccgagccg acggctgggc cctgttcggc
     1381 ctggctcagg cgcttcaggc cgagggccga cgcgacgagg cgaccaagac acggcgggcg
     1441 tttggccagg cttgggcgtt ggcggacgtg aaactgaccg cgtcgcggtt ttgagggcac
     1501 gaccaaaccg cgaagcggcg gatcattcca tggcgtctgg gcggttcacc tgatccgcgc
     1561 cgaggcgcgg tgaaggctac ggcgcggcgt cgagaccgcc gccgagggcg gtgtagaggg
     1621 tgaccaggtt ggtggcttcg gtct
//
LOCUS       DATAJL010000983         3927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112605,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000983 DATAJL010000000
VERSION     DATAJL010000983.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3927
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112605"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VHN39_18550"
     CDS             <1..207
                     /locus_tag="VHN39_18550"
                     /inference="COORDINATES: protein motif:HMM:NF012422.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="HEX2818400.1"
                     /translation="PAAATVRLTQRQTDVLKLIATGESNKQIARELDLSPATIKAHIA
                     AAIAALGAANRTEAVVKAREMSLI"
     gene            complement(204..1421)
                     /gene="nhaA"
                     /locus_tag="VHN39_18555"
     CDS             complement(204..1421)
                     /gene="nhaA"
                     /locus_tag="VHN39_18555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003163898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEX2818401.1"
                     /translation="MLTGAMAKRITLDFLKTEAASGVILAAAALAAIALANSPWAGAY
                     FGFIHAPFTVQLGAFTESLPVLDWVKEGLMAIFFFVVGLEIKYEIVRGELANPRRLAL
                     PVIAALGGMVGPALIYLAINMGPPFGFEGGAPRGWPTPVATDIAFAIAALAVAGPKLP
                     PNLRVFLLTLAIVDDLGAVGLIGLLFTDHFRVMELLGALLALTGMGLLGRWRKAPYLF
                     YLVGFVIVWGFTLKSGISTSLAGVAAAATIPLNPRKPGRPGVLEDFMEGLHPYVAFLI
                     LPLFAFCAAGFSIRGLGLSDLFGPIALGVAAGLFIGKQLGVFGATALVIGLKLARRPT
                     GAKWIELYGLSLLCGIGFTMSLFIGQLAFPLSDAAAEAQIRIGVVAGSLASTLAGMAV
                     LAWSQARRGREAD"
     gene            1486..2049
                     /locus_tag="VHN39_18560"
     CDS             1486..2049
                     /locus_tag="VHN39_18560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051920 - peroxiredoxin activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEX2818402.1"
                     /translation="MRLTKPRFAPLTDAELTPEQAEALEPMRPGPVLNIFRTLAHAPK
                     ALARFNQWGGYVLSRRNDLAPREREIVILRTGFLCKSGYEWTQHKRIGLASGLTEDEI
                     GRIKAGADAGWGPADAALIRASDELHADQFIGEATWAELGKHFSDKQRMDVVFTTGQY
                     TQVSMILNTFGVQLDAGQTLDPDLKGF"
     gene            2052..2855
                     /locus_tag="VHN39_18565"
     CDS             2052..2855
                     /locus_tag="VHN39_18565"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2818403.1"
                     /translation="MGGRLDGKIAVVIGAGQTPGETVGNGRAMAMLFAREGASVLCVD
                     RVVERADETVAMIVEEGGVASSLAADIVKGADCARIVEETKARYGGRLDILINNVGIG
                     GGDAPAHRLEEAAFDRIMTVNLKGMWLTIKAALPTMREQGGGAIVNISSLAARAGGIQ
                     FAYEVSKAGVNRLTTSVAQSNARYGVRCNAIMMGYMDTPMAVVGIASATGRPTSEVRA
                     ERDARVPLGGKMGDGWDTAYAALFLASDEAKFISGAILPVDGGMGIRIG"
     gene            2967..>3927
                     /locus_tag="VHN39_18570"
     CDS             2967..>3927
                     /locus_tag="VHN39_18570"
                     /inference="COORDINATES: protein motif:HMM:NF021553.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2278 family protein"
                     /protein_id="HEX2818404.1"
                     /translation="MPLSAYGLLVGKITGSRPTNPGHAHWLLMVQPDTPGHPPYRVAV
                     NLEAVGRADLESQVIEVEASGSAGLKDLVAQLRDQGATPSFLTGPGLPTLDFVRGELI
                     DPAAFPTAPAGETPETAFQVALGEAIDSDDALLAVFGTGYPVKAGSKGSPSTGFTGVE
                     NVHMNQGTLNKTGSAAPYRENGPDQDGGLIFLLKDRAVAFFVKFKSQSVANDKNGNPL
                     TTGIDEIDKAVPQVKALLAAHPAVTEALAAAKAVAATPFAGETPAGFVFSDPGPDDIA
                     GQFMVDDDGGASQTSFVMTYAKGHTRGPVPNPRSYPTLKLTDIM"
BASE COUNT          698 a         1357 c         1368 g          504 t
ORIGIN      
        1 ccggcggccg ccacggtgcg gctgacccag cggcagaccg atgtgctgaa gctgatcgcc
       61 acgggggagt ccaacaagca gatcgcccgc gagctcgacc tgtcgccggc caccatcaag
      121 gcgcacatcg ccgccgccat cgccgccctc ggcgccgcca accgcaccga ggcggtggtc
      181 aaggctcgcg agatgagcct gatctaatcg gcctcgcgcc cgcgccgcgc ctgcgaccag
      241 gcgagcaccg ccatgccggc gagcgtcgaa gccagcgagc cggccaccac cccgatgcgg
      301 atctgagcct cggccgccgc gtcgctgagc gggaaggcga gctggccgat gaacaggctc
      361 atggtgaagc caatgccgca gagcagcgac aggccgtaaa gctcgatcca tttggcgccc
      421 gtcggccggc gcgccagctt caggccgatg accagcgccg tggccccgaa gacgcccagc
      481 tgcttgccga tgaagaggcc cgcggcgacg ccgagcgcga tcggcccgaa gaggtcggag
      541 aggcccaggc cgcggatcga gaacccggcg gcgcagaagg cgaacagcgg caggatcagg
      601 aaggccacgt aagggtgcag cccctccatg aagtcctcca gcacgccggg tcggccgggc
      661 ttcctgggat tgagcgggat tgtcgccgcg gccgcgacgc cggccagcga ggtggagatc
      721 cccgacttca gggtgaagcc ccagacgatg acgaagccca cgaggtagaa gaggtagggc
      781 gccttacgcc agcggccgag cagacccatc ccggtaagcg ccaggagcgc gcccaggagc
      841 tccatcaccc ggaagtggtc ggtgaagagc aggccgatca ggccaacggc gcccaggtcg
      901 tcgacgatgg ccagcgtcag gaggaagacc cgcaggttgg gcggcagctt tggcccggcg
      961 acggccaggg ccgcgatggc gaaggcgatg tcggtggcga cgggcgtggg ccagccgcgc
     1021 ggggcgccgc cctcaaaccc gaagggcggg cccatgttga tggcgaggta gatcagcgcc
     1081 ggcccgacca tgccgccgag ggccgcgatc accggcagag ccaggcgccg cggattggcc
     1141 agttcgcccc ggacgatctc gtatttgatc tccaggccca cgacgaagaa gaagatcgcc
     1201 atcagccctt ccttgaccca gtcgaggacg ggaagggact cggtgaaggc gcccagctgc
     1261 accgtgaacg gggcgtggat gaacccgaaa taggcgccgg cccagggcga gttggcgagc
     1321 gcgatggcgg cgagcgccgc ggccgccagg atcacgcccg acgcagcttc ggtcttcagg
     1381 aaatccagcg tgatccgctt ggccatggct ccggttagca tggtcacgcg cccgtcgcta
     1441 aggtatccga acagcctcag cctgagatcg gcgacggagg gacccatgcg actgacgaag
     1501 cctcgatttg caccgctcac cgacgccgaa ctgacccccg aacaggccga ggcgctcgag
     1561 cccatgcggc cgggtccggt gctgaacatt ttccgcacgc tcgcccacgc gcccaaggcg
     1621 ctggcgcggt tcaaccagtg gggcggctat gtgctgtcgc gccgcaacga cctggcgccg
     1681 cgcgagcggg agatcgtcat cctgcgcacc gggttcctct gcaagtccgg ctacgaatgg
     1741 acccagcaca aacggatcgg cctggcctcc ggcctcaccg aggacgagat cggccgcatc
     1801 aaggccggag ccgacgcggg ctggggcccg gccgacgccg ccctgatccg cgccagcgac
     1861 gagctgcatg cggaccagtt catcggcgag gcgacctggg ccgaactcgg caagcatttc
     1921 agcgacaagc agcgcatgga cgtggttttc accaccggcc agtacaccca ggtctcgatg
     1981 atcctgaaca ccttcggggt gcagctcgac gccgggcaga ccctcgatcc cgacctgaag
     2041 ggcttttgac aatgggcggc agactggacg gcaagatcgc ggttgtcatc ggagccggcc
     2101 agacgcccgg cgagacggtc ggcaatgggc gggccatggc catgctgttc gcccgcgagg
     2161 gcgccagcgt gctctgcgtc gaccgggtcg tagaacgggc cgacgaaacc gtggcgatga
     2221 tcgtcgagga gggcggcgtc gcctcctcgc tggccgccga catcgtcaag ggcgcggact
     2281 gcgccaggat cgtcgaggag accaaggcgc gctatggcgg gcgcctcgac atcctgatca
     2341 acaacgtcgg catcggcggc ggcgatgcgc cggctcaccg cctggaggag gcggccttcg
     2401 accgcatcat gacggtcaac ctgaagggca tgtggctgac catcaaggcg gcgctgccga
     2461 ccatgcgcga gcagggcggc ggggccatcg tcaatatctc gtccctggcc gcgcgggccg
     2521 gcggcatcca gttcgcctac gaggtctcca aggccggagt gaaccggctg accaccagcg
     2581 tggcgcagtc caacgcccgc tacggcgtgc gctgcaacgc catcatgatg ggctacatgg
     2641 acacccccat ggcggtcgtc ggcatcgcca gcgccaccgg ccggccaacc tcggaggtcc
     2701 gcgccgaacg tgacgcccgg gtcccgctgg gcggcaagat gggcgacggc tgggacaccg
     2761 cctacgcggc cctgttcctg gcctcggacg aagccaagtt catctccggc gcgatcctgc
     2821 cggtggacgg cggcatgggg atccggatcg gttgaaccgg acgcctcgga ctgcatctgg
     2881 acgaaacgca actcagggcg attaatttgc aggggcgtcg cggggcccgc gcccggttcc
     2941 atccgaagcc ttgaaggagc gcgcccgtgc cgctttccgc ctacggcctg ctggtcggca
     3001 agatcaccgg ctcgcgcccg acgaacccgg ggcacgccca ctggcttctg atggtgcagc
     3061 cggacacgcc cggccacccg ccctaccgcg tggcggtcaa tctggaggcg gtcggccggg
     3121 cggatctgga aagccaggtc atcgaggtgg aggcgagcgg ttcggcaggg ctcaaggacc
     3181 tggtggcgca gctgcgcgat caaggcgcga ccccgagctt cctcaccggt cccggcctgc
     3241 caaccctgga cttcgtccgc ggcgagctga tcgacccggc ggccttcccg accgcgccgg
     3301 ccggcgaaac ccccgagacc gccttccagg tggctctggg ggaggcgatc gacagcgacg
     3361 acgcgctgct cgcggtcttc ggaaccggct atccggtcaa ggccggatcg aagggctcgc
     3421 ccagcaccgg cttcaccggc gtcgaaaacg tccacatgaa ccagggcacg ctcaacaaga
     3481 ccgggtcggc ggcgccctat cgggagaacg gccccgacca ggacggcggg ctgatcttcc
     3541 tgctgaagga ccgggcggtg gccttcttcg tcaagttcaa gagccagtcg gtggcgaacg
     3601 acaagaacgg caacccgctg accaccggca tagacgagat cgacaaggcc gtgccgcagg
     3661 tcaaggcgct gctggcggcc catccggccg tgaccgaggc gctggcggcg gccaaggcgg
     3721 tggcggccac gccgttcgcc ggcgagaccc cagccggctt tgtcttctcc gaccctggcc
     3781 ccgatgacat cgccggccag ttcatggtcg acgacgacgg cggcgccagc caaacgagct
     3841 tcgtgatgac ctacgccaag ggccatacgc gcgggccggt gcccaatccg cggagctatc
     3901 cgaccctgaa gctcaccgac atcatgg
//
LOCUS       DATAJL010000984         2273 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112624,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000984 DATAJL010000000
VERSION     DATAJL010000984.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112624"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..424)
                     /locus_tag="VHN39_18575"
     CDS             complement(<1..424)
                     /locus_tag="VHN39_18575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heparan-alpha-glucosaminide N-acetyltransferase
                     domain-containing protein"
                     /protein_id="HEX2818405.1"
                     /translation="MEKPAARFLSLDVFRGLAVCLMIVVNTPGPGAHPYPWLVHAKWF
                     GFTAADAVFPSFLFAVGCSMAFAFSQRPPAGAFAVKVLRRAALIFLLGFLMYWYPFVH
                     RVDGAWTLTPFADTRVMGVLQRIALCYALAAFAVRYLSP"
     gene            complement(434..>2273)
                     /locus_tag="VHN39_18580"
     CDS             complement(434..>2273)
                     /locus_tag="VHN39_18580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-N-acetylglucosaminidase"
                     /protein_id="HEX2818406.1"
                     /translation="IDWMAVHGIDMPLALEGQEFVWRALWREAGLTEAELAGYFSGPA
                     FTPWQRMGNIEGYRAPLPAAWIDKKRDLQRRILGAMRGLGMSPILPAFGGYVPKAFAL
                     KHSSARIYRMPAGGGFHETYWLDPRDPLFARLSARFLALYTDTYGPGTYYLADSFNEM
                     RPPVADDGTGGGNAGFGDGGASKAAAALQIDPALKAQRLAAYGKAIHAAFHLARPDAV
                     WVMQGWLFGSDPQFWDEAAIAAYFSQVPDGGVMVLDIGNDRYPDVWRRAKAFGGKPWV
                     FGYVHNYGASNPVYGDLDGYRRDLAALVADPQAGRLAGFGMFPEGLDNNSIVYEEAYD
                     LAWGAGGASLAAWLSAYATSRYGRTTPELDAALRRLVKAAYSTRYWTPRWWNGRAGAY
                     LFCKRPTATITGFAGDPGDRVELAAAVGELARLAPAFAGEPLFVHDLIDAAGHLVSEE
                     IDLLLQTAVAAYRRGDLAAGDEARRKVEDLALALDALLGAQPDTLGAWIDAARGYADT
                     ASDARAYVANAKAQVTVWGGDGGLADYASKVWQGLYRDFYLPRWSQFLDALRAAGAGP
                     FDEAAVVRGIAAWEQAWVERDVAYVRQRPADPVGATRALLARLERP"
BASE COUNT          386 a          788 c          814 g          285 t
ORIGIN      
        1 gtggcgacag atagcgcacg gcgaaggcgg ccagcgcata gcagagcgcg atccgctgca
       61 gcacgcccat cacccgggtg tccgcgaagg gcgtcagcgt ccaggcgcca tcgacgcgat
      121 ggacgaaggg ataccagtac atcagaaacc cgagcaggaa gatcagcgcc gcccgccgca
      181 ggaccttgac cgcgaaggcg ccggctggcg ggcgctgcga gaaggcaaag gccattgaac
      241 agcccacggc gaacaggaac gacgggaaga ccgcgtccgc ggcggtaaag ccgaaccact
      301 tggcatggac cagccaggga tagggatgcg ctcccgggcc gggcgtgttg acgacgatca
      361 tcaggcagac ggcgagcccg cggaatacgt ccagcgacag gaagcgcgcg gcaggctttt
      421 ccatggccaa gctttacggc cgctcgaggc gcgcgagaag ggcccgcgtg gcgcccacgg
      481 gatcggcggg gcgctggcgg acgtaggcga catcgcgttc cacccatgcc tgctcccagg
      541 ccgcgatgcc gcgcaccacc gccgcctcat cgaagggccc ggcgccggcc gcgcgcaatg
      601 cgtccaggaa ctgcgaccac cggggcaggt agaagtcgcg atagagaccc tgccagacct
      661 tcgacgcgta gtcggccagg cccccgtcgc cgccccagac cgtcacctgg gccttcgcgt
      721 tggcgacgta ggcgcgcgcg tcggaggcgg tgtcggcata gccgcgggcg gcgtcgatcc
      781 aagcgccgag ggtgtccggc tgggcgccca ggagcgcatc gagggccaga gcgaggtctt
      841 ccaccttgcg ccgcgcctcg tcgccggccg ccaggtcgcc gcggcgatag gcggcgacgg
      901 ctgtctgcag caggaggtcg atctcctcgc tgaccaaatg gcccgcggcg tcaatcaggt
      961 catggacgaa gagcggttcg cccgcgaagg caggggccag ccgcgccagc tcgccgaccg
     1021 cggccgccag ctcaacccgg tcgccgggat cgcccgcgaa cccggtgatg gtcgccgtcg
     1081 gccgtttgca gaagaggtag gcgccggccc ggccattcca ccagcgcggc gtccagtagc
     1141 gcgtcgaata ggcggccttg accagtcgcc gaagcgccgc atcgagctcc ggtgtcgtgc
     1201 gcccgtagcg cgacgtcgca taggctgaga gccaggccgc cagcgaggcg ccgcccgcgc
     1261 cccaggccag atcataggcc tcctcataga cgatggaatt gttgtcgagc ccctcgggga
     1321 acatgccgaa gccggccagc cgcccggcct gcggatcggc cacaagggcc gccaggtcgc
     1381 ggcggtagcc gtcgagatcg ccataaacgg gattgctggc gccgtagttg tgcacgtagc
     1441 cgaagaccca cggcttgccg ccgaaggctt tggcccgccg ccagacgtcc ggatagcggt
     1501 cgttgccgat gtcgagcacc atcacgccgc cgtccgggac ctggctgaag taggcggcga
     1561 tggccgcctc gtcccagaac tgcgggtcgg acccgaagag ccagccctgc atcacccaga
     1621 ccgcgtcagg ccgggccagg tggaaggccg cgtggatcgc ctttccatag gcggcgaggc
     1681 gttgcgcctt cagcgccgga tcgatctgga gcgccgccgc ggccttactg gcgccaccgt
     1741 ccccgaagcc ggcattgccg ccacccgtcc catcgtcggc gacgggcggg cgcatctcgt
     1801 tgaaggagtc ggcgaggtag taggtccccg gcccgtaggt gtcagtgtag agcgcgagga
     1861 accgcgcgga gagcctggcg aacagcggat cgcgcggatc gagccagtag gtctcgtgga
     1921 agccgccgcc ggccggcatg cggtagatgc gggcgctcga atgcttcagg gcgaaggcct
     1981 tcggcacata gccgccgaac gccggcagga tcgggctcat gccgagcccg cgcatggcgc
     2041 cgaggatccg ccgctggagg tcgcgcttct tgtcgatcca cgccgccggg agcggggcgc
     2101 gatagccctc gatgttgccc atccgctgcc agggcgtgaa ggcggggccg gagaaatagc
     2161 cggcgagctc ggcctcggtg agccccgcct cgcgccacag ggcccgccag acgaactcct
     2221 ggccttcgag cgccagcggc atgtcgatcc catggaccgc catccagtcg atc
//
LOCUS       DATAJL010000985         5036 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127457,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000985 DATAJL010000000
VERSION     DATAJL010000985.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5036
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127457"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..462)
                     /locus_tag="VHN39_18585"
     CDS             complement(<1..462)
                     /locus_tag="VHN39_18585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003168349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEX2818407.1"
                     /translation="MAKPPPSGPALNDRAGEPRPGRSPFQAFIYWTLVVSVWALIFVV
                     AFFAVFSVDLPDTSKLYDVKRQPSISYLDRSGGLVAVRGSQYAPPVDLDKLPPYVPKA
                     FVAIEDRWFYWHFGFNPWGIARSQFYDWTHKGGGPLRGGSTITQQLARNLFL"
     gene            699..1301
                     /locus_tag="VHN39_18590"
     CDS             699..1301
                     /locus_tag="VHN39_18590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004620729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEX2818408.1"
                     /translation="MRVALLVALTVFGAAACAKVGGGGALPDDMDMGNAQAKVTVVEY
                     ASVGCPVCAKWQREVYPAFKAKYIDTNKIHYVFREMLVGGGPEIAVAASGFLVARCAG
                     KDKYFSVNDAIFRDQEQAFEAPRETLLNVAKSVGMTEDSFNKCINDEKAIQALNDRVE
                     RHSRNDHVNSTPTFVINGKALEPGYHSLDEIDAAIKAAGG"
     gene            1553..1897
                     /locus_tag="VHN39_18595"
     CDS             1553..1897
                     /locus_tag="VHN39_18595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818409.1"
                     /translation="MKLLTLAAACAAVFTLTAAPAFADDPIVAKLAQPVPQAIKFIDG
                     EAVFVCKDDPCVAASPQSATFATSTCKIIAGKFGQVTSFGGLKAMDDTRLSACNAVAV
                     ARAASGTQLAKH"
     gene            2148..2771
                     /locus_tag="VHN39_18600"
     CDS             2148..2771
                     /locus_tag="VHN39_18600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEX2818410.1"
                     /translation="MPGFLLAVVLIEITPGPNMGYLTLVGTRWGRRAGLTTVAGITCG
                     LAFYMLLAVAGVGEAILRAPLLYVALRWAGVGYLLWLAVDTWRGDRETSPGHALAAPD
                     PGRLFTRGLVANLLNPKAAVFYIALLPGFTNPDRGNPALQALILGAIHIAISVMVHAS
                     IVMAAGSARPAIEAWTAGSGRRWLERGFALALATIALWLAWETSRTA"
     gene            3010..3564
                     /locus_tag="VHN39_18605"
     CDS             3010..3564
                     /locus_tag="VHN39_18605"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEX2818411.1"
                     /translation="MADDSKLSNVGSRYAQALFDLASETKQVAAVEADLKSLKTALKD
                     SHDLRVLVGSPAFGAEDKGKGLVAIAVKAKFNMTTVKFLGLLATNGRASSLASVITGY
                     EALSAKARGAVSAQVTTAVELSPAQSKGVAAALRQALGKDPEIETRVDPAILGGIKVQ
                     VGSRLFDASLKSKLDSLKFALKRA"
     gene            3570..>5036
                     /gene="atpA"
                     /locus_tag="VHN39_18610"
     CDS             3570..>5036
                     /gene="atpA"
                     /locus_tag="VHN39_18610"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEX2818412.1"
                     /translation="MDIRAAEISAILKSQIANFGEEADVSDVGKVLSVGDGIARVFGL
                     DSVQAGEMVEFPKAGVKGMALNLERDNVGVVIFGEDRAISEGDEVRRLGEIVDVPVGR
                     GLLGRVVNPLGEPIDGKGPLTNVAERRRVDVKAPGIIPRKSVHEPVQTGLKAIDTLIP
                     IGRGQRELIIGDRQTGKTAVAIDTILNQRAINAGTDESAKLYCIYVAIGQKRSTVAQI
                     VKTLEERGALDYTIVVSATASEPAPLQFLAPFAGCAMGEWFRDNGMHAVIIYDDLSKQ
                     AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNEDNGSGSLTALPLIETQAN
                     DVSAYIPTNVISITDGQIFLETDLFFQGIRPAVNVGLSVSRVGSSAQTKAMKKVAGKI
                     KGELAQYREMAAFAQFGSDLDASTQRLLARGSRLTELLKQPQFSPLKMEEQVVVIYAG
                     VNGYLDPLPLDRIKPFEDGLLALLRSSHPDILEAIRASS"
BASE COUNT          877 a         1691 c         1638 g          830 t
ORIGIN      
        1 caggaagagg ttccgcgcca gctgctgggt gatcgtcgag ccgccgcgca agggtccgcc
       61 gcccttgtgg gtccagtcgt agaactggct gcgcgcgatg ccccaggggt tgaagccgaa
      121 gtgccagtag aaccaacgat cctcgatggc cacgaaggcc ttgggcacat agggcggcag
      181 cttgtcgagg tcgaccggcg gggcgtactg gctgccgcgc accgccacca ggccgccgga
      241 tcggtcgagg taggagatcg agggctggcg cttgacgtcg tagagcttgg aggtgtcggg
      301 caggtccacc gagaagaccg cgaaaaaggc gacgacgaag atcagcgccc agacgctcac
      361 caccagcgtc cagtagatga acgcctggaa cggggaacgg cccgggcggg gctcgccggc
      421 ccgatcgttc aaagcagggc cgctcggcgg cggtttggcc atctgctggt cgtcctacgg
      481 tcgtgcgagg ccgccccgac ccgggccgac ccataaccca gccccgacaa gcacgcgaca
      541 agattgacga gatatgaacg gcgggcttcg agagcccccg cggacgcctt tcattgcggc
      601 caagcttgcg tcacattccg cccccaggtt ctaagtgggc cgaggttcta agaggatcgg
      661 gccgtcgcgc cctggaggga ttgttcaaga tgttgcggat gagggttgcg ctgctggtgg
      721 cgctcacggt gttcggcgcg gccgcctgtg cgaaggtcgg cggcggcggc gcgctgcccg
      781 acgacatgga catgggcaac gcccaggcca aggtcacggt ggtggaatac gcctcggtgg
      841 gctgcccggt ctgcgccaag tggcagcgcg aggtctatcc ggccttcaag gccaaataca
      901 tcgacaccaa caagatccac tacgtgttcc gcgagatgct ggtgggcggc ggcccggaga
      961 tcgcggtcgc cgcctccggc ttcctcgtcg cccgctgcgc cggcaaggac aagtacttct
     1021 cggtcaacga cgcgatcttc agggatcagg aacaggcctt cgaagcgccg cgcgagaccc
     1081 tgctcaacgt cgccaagtcg gtgggcatga ccgaggacag cttcaacaag tgcatcaatg
     1141 acgagaaggc gatccaggcg ctgaacgacc gcgtcgagcg ccacagccgc aatgaccatg
     1201 tcaattccac gccgaccttc gtgatcaacg gcaaggcgct ggagcccggc taccactcgc
     1261 tcgacgagat cgacgcggcg atcaaggcgg ccggcggctg aggattccgc ctgtttaata
     1321 gggcgccggt gatcgagatc gatcattggc gcccaagggg tgtgctcaac gccagcgcat
     1381 agctgcactg caaaaaaagc agttgccccc gatcttaaca ctgttatctt agcgatgctc
     1441 agttcgtggc gcgccgaggg tggggatacc tgaagcgatc ccacgcgacg gaccgggccg
     1501 gcgccttgag caggggcgcc gccactcccc gaactgattt ggagggctca tcatgaagct
     1561 ccttaccctt gcggccgcct gcgccgctgt tttcaccctg accgccgccc ccgccttcgc
     1621 cgacgatccg atcgtggcca agctggcgca accggttccc caagccatca agttcatcga
     1681 cggggaagcg gtgttcgtct gcaaggatga cccctgcgtg gccgcctcgc cgcagtcggc
     1741 gaccttcgcg acctcaacct gcaagatcat cgccggcaag ttcggtcagg tgacctcgtt
     1801 cggcggtctg aaggcgatgg acgacacccg cctgagcgcc tgcaacgcgg tcgccgtggc
     1861 gcgcgccgcc tccggaaccc agctggccaa gcactaggcc ggaccttttt acgctctccc
     1921 agcagctctt ttgtcgagct tctgaactat gggcgccggc cttcgggtcg gcgccctttt
     1981 ttctttgccc ggcggccggt gcgagcgcca tgctagggtg ccggatctga agttcgcctc
     2041 aatcaaggcc gcgcgccgag cgaacttcaa atccggcaca ccagggtgaa ccgacagccc
     2101 gagaacgcca ggaggccgcc attcgcctgc cgttcgatcc ggagctgatg ccgggattcc
     2161 ttctggcggt cgtgctgatc gagatcacgc ccgggccgaa catgggctac ctcaccctgg
     2221 taggaacccg ctggggccgc agagcaggtc tgacgaccgt cgccgggatc acctgcggcc
     2281 tggcgttcta catgctcctg gccgtggccg gcgtcggcga ggccattctg cgcgcgccat
     2341 tgctgtacgt ggccctgcga tgggccggcg tcggctatct gctgtggctg gcggtcgaca
     2401 catggcgagg cgaccgggaa acctcgccgg gccatgcgct tgcggcgccg gacccagggc
     2461 ggctgttcac ccgcgggctg gtcgccaacc tgctcaaccc gaaagccgca gtcttctaca
     2521 tcgcgctcct gcccggcttc accaatccgg accggggcaa ccccgccctg caagccctca
     2581 tcctcggggc catccacatc gcgatcagcg tgatggtgca cgcctcgatc gtcatggcgg
     2641 cggggagcgc gcggcccgcc atcgaagcct ggactgcggg ctccggccgg cgatggttag
     2701 agcgtggatt cgccctggcc ctggcgacca tcgcgctgtg gctggcctgg gaaacctccc
     2761 ggaccgccta ggcgccggca ggtcgccgcg ggacggcctt aagcgcatag cctccgtgac
     2821 tattcatcgc gccgcccggg cccactcgtg ttgcggcgcg ggaggtcgcg tgctatcagg
     2881 cgcgcggctt tgggacaggg gtctatgaga cctttcggac cgatgtgctt tttccaagcg
     2941 ctttcaagcc tttaaggctg ctgcggaatc cccgccgcgg ctctctagac gcaccgggcg
     3001 gacacttaag tggcggacga ctccaagcta tcgaatgtgg gctccaggta cgcgcaggcc
     3061 ctgttcgatc tggcgagcga aaccaagcag gtcgcggcgg tcgaagccga cctgaaatcc
     3121 ttgaagaccg cgctgaagga cagccatgat cttagggtcc tggtgggctc gccggcgttc
     3181 ggcgccgagg acaagggcaa gggcctcgtc gccatcgccg tgaaggcgaa gttcaacatg
     3241 accacggtca agttcctggg cctgctcgcc accaatggcc gcgcctcgtc gctggcctcg
     3301 gtgatcaccg gctacgaggc gctgtcggcc aaggcccgcg gcgcggtctc cgcccaggtc
     3361 accacggccg tcgaactcag ccccgcccag tccaaaggcg tggccgccgc gctgcgccag
     3421 gccctgggca aggaccccga aatcgagacc cgcgtagacc ccgccatcct cggcgggatc
     3481 aaggtgcagg tcggctcccg tctgttcgac gcttcgctca agtcgaagct cgactccctc
     3541 aaattcgccc tcaagagagc gtaagattca tggatatccg cgccgccgaa atctcggcca
     3601 ttctcaagtc gcagatcgcc aatttcggcg aagaagctga cgtttccgac gtcggcaagg
     3661 tgctgtcggt cggcgacggc atcgcccgcg tgttcggcct cgacagcgtc caggccggcg
     3721 aaatggtcga gttccccaag gccggggtga agggcatggc cctcaacctc gagcgcgaca
     3781 acgtcggcgt ggtgatcttc ggcgaagacc gcgccatctc cgagggcgac gaagtccgcc
     3841 gcctgggcga gatcgtggac gtgccggtgg gcaggggcct gctgggccgc gtggtcaatc
     3901 cgctgggcga gcccatcgac ggcaagggtc cgctgaccaa cgtggccgaa cgccgccggg
     3961 tggacgtgaa ggcgccgggc atcatcccgc gcaagtcggt gcacgagccg gtgcagaccg
     4021 gcctcaaggc catcgacacc ctgatcccga ttggccgcgg ccagcgcgag ctgatcattg
     4081 gcgaccgcca gaccggcaag accgcggtcg ccatcgatac gatccttaac caacgcgcga
     4141 tcaacgccgg gaccgacgag agcgccaagc tctactgcat ctacgtcgcc atcggccaga
     4201 agcgctccac cgtcgcccag atcgtcaaga cgctcgagga gcgcggcgcg ctggactaca
     4261 ccatcgtggt ctccgcgacg gcgtcggaac cggccccgct gcagttcctg gcgcccttcg
     4321 ccggctgcgc catgggcgag tggttccgcg acaacggcat gcacgccgtg atcatctatg
     4381 acgacctttc caagcaggcc gtcgcctatc gccagatgag cctcttgcta cgccgcccgc
     4441 cgggccgcga agcctatccg ggcgacgtct tctatctgca cagccgcctc ctggaacgcg
     4501 ccgccaagct caacgaagac aatggctccg gctcgctgac ggcgctgccg ctgatcgaga
     4561 cccaggccaa cgacgtctcg gcctatatcc cgaccaatgt gatctcgatc accgacggcc
     4621 agatcttcct ggaaaccgac ctgttcttcc agggcatccg tccggcggtc aacgtcggtc
     4681 tgtcggtgtc gcgcgtcgga tcgtcggcgc agaccaaggc gatgaaaaag gtcgccggca
     4741 agatcaaggg cgaactggcg cagtaccgcg aaatggctgc gttcgcgcag ttcggctcgg
     4801 atctggacgc ctcgacgcag cgcttgctgg cgcgcggttc gcgcctgacc gaacttctga
     4861 agcagccgca attctcaccg ctgaaaatgg aagagcaggt cgtggtgatt tacgccggcg
     4921 tcaacggcta tctcgatccg ctgccgctcg atcggatcaa gccgttcgag gacggattgc
     4981 tggcgctgct gcgcagctcg caccctgata ttctggaagc gatccgcgcc tcgtcg
//
LOCUS       DATAJL010000986         2199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127459,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000986 DATAJL010000000
VERSION     DATAJL010000986.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127459"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VHN39_18615"
     CDS             <1..413
                     /locus_tag="VHN39_18615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818413.1"
                     /translation="VDSKVTSSLVTNDPFGVATNINGEAFPNSPKSHLTGDVQYTAAL
                     VEGWRWFAGAGAQYRSATTAAFAGGPLFDVRGYTLLDLRGGVESENGRWRVTAWGNNV
                     TDQFYVTNVSHVVDAVARVTGMPATYGVTLGYRY"
     gene            434..1480
                     /locus_tag="VHN39_18620"
     CDS             434..1480
                     /locus_tag="VHN39_18620"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2818414.1"
                     /translation="MSAKILTSALARDADRRQLLAAATGLAALAATAGRAKAAPSTLG
                     KIDTHQHFFPKVYVDAVGLDTLAAQMPNKKAPEWSPDLAIEVMDQNGIAEGIISVSSG
                     PPIPNAPRLLRACNDAAADLRAKRPGRFGSFASLPLPDVDASLKEAAHALDDLKADGV
                     IIFASYDGKYLGDPLYNPLWEELNRRHAVVFIHPNQPPYAVPPIAPASVLEFPFETTR
                     TATSLIIAGAHHTYPNIKFILSHAGGTLPYLVPRLSLSFSMMPGVAERVGDPKAAFAK
                     FYYDTALSAGPSTLAALAEVAPPEHVLFGTDFPMAPRPAISAFNVELDHVEPVQRRRI
                     HRTNAAKLLSRRVA"
     gene            complement(1477..>2199)
                     /gene="mmsB"
                     /locus_tag="VHN39_18625"
     CDS             complement(1477..>2199)
                     /gene="mmsB"
                     /locus_tag="VHN39_18625"
                     /EC_number="1.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008442 - 3-hydroxyisobutyrate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006574 - valine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyisobutyrate dehydrogenase"
                     /protein_id="HEX2818415.1"
                     /translation="ELVVTMLPAGPHVRGAYLDPKGILAHAKPGALLIDCSTIDVESA
                     RAVAAQAKSAGFRFADAPVSGGQAGAEAGTLAFMVGCDEADFAAIESIIGPMSRITIR
                     AGDHGAGQAAKICNNMVLGATMIATCEAFALAEKLGLEPERFFEIASKSSGQCWSLTS
                     YCPWPGPVPTAPSNRNYEGGFATAMMLKDLKLAQEAAAKAGAATPLGAQAEGLYALFD
                     RLGGGGKDFSAILELFRGNAPA"
BASE COUNT          348 a          810 c          715 g          326 t
ORIGIN      
        1 atgtagactc gaaggtcacc tcgtccctgg tgaccaacga cccgttcggc gtggcgacga
       61 acatcaacgg ggaggccttc ccgaacagcc cgaagtcgca cctgaccggc gacgtgcagt
      121 acaccgccgc gctcgtcgag ggctggcgct ggttcgccgg cgccggggcg cagtaccgca
      181 gcgcgacgac cgcggccttc gccggcggac cgctcttcga cgtcaggggc tacaccctgc
      241 tcgacctgcg cggtggggtg gaatcggaga acggccgctg gcgcgtcacc gcctggggaa
      301 acaacgtcac cgaccagttc tacgtcacca acgtctcgca cgtggtggac gcggtcgcac
      361 gggtgaccgg catgccggcc acctatggcg tgaccctcgg ctaccgttac tgaccccgaa
      421 aggaacgcgc gccatgtctg cgaagatcct gacgtccgcg ctcgcccgtg acgccgatcg
      481 ccgacagctg ctcgccgcag ccaccggcct cgccgccctg gcggccacgg ccggccgcgc
      541 caaggctgcg ccttcgaccc tgggcaagat cgatacgcac cagcacttct tcccgaaggt
      601 ctatgtggat gcggtcgggc tcgacaccct ggcggcccag atgccgaaca agaaggcccc
      661 ggagtggtcg ccggacctgg caatcgaagt gatggaccag aacggcatcg cagagggcat
      721 catctcggtg tcctccggac cgccgatccc gaacgcgccg cgcctgcttc gcgcctgcaa
      781 cgacgctgca gccgacctgc gggcgaaacg gccgggccgc ttcggctcct tcgccagcct
      841 gccgctgccg gacgtggacg ccagcctgaa ggaggccgcc cacgccctgg acgacctgaa
      901 ggccgacggg gtgatcatct tcgccagcta cgacggtaag tacctgggcg atccgctcta
      961 caatccgctc tgggaagagc tgaaccgccg ccacgcggtc gtgttcatcc accccaacca
     1021 accgccctac gccgtgccgc ccatcgcgcc cgcctcggtg ctcgagttcc ccttcgagac
     1081 cacgcggacg gccaccagcc tgatcatcgc cggcgcgcac cacacctacc ccaacatcaa
     1141 gttcatcctc tcacacgccg gtgggacgct gccctacctc gtgccgcgcc tcagcctgtc
     1201 gttttcgatg atgccagggg tggccgagcg ggtcggcgac cccaaggcgg ccttcgccaa
     1261 gttctactac gacaccgcgc tctcggccgg accgtcgacc ctggccgcct tggcggaagt
     1321 cgctccgccc gaacacgtct tgttcgggac cgacttcccc atggcgccgc gaccggcgat
     1381 ctccgccttc aatgtggagc tcgaccatgt tgagccggtc cagcgccggc ggatccaccg
     1441 cacgaacgcc gccaagctgc tgtcgcgccg ggtcgcctag gcgggcgcat tcccccggaa
     1501 cagctccagg atcgccgaga agtcttttcc cccgccgccg aggcggtcga acagggcgta
     1561 aaggccctcc gcctgggcgc ccagcggggt cgcggcgccg gccttggcgg cggcttcctg
     1621 ggcgagcttt aggtccttca gcatcatcgc cgtagcgaaa ccgccctcgt agttgcggtt
     1681 ggagggcgcg gtgggcaccg ggcccggcca ggggcaatag ctggtcaggc tccagcactg
     1741 gcccgaagac ttcgacgcga tctcgaagaa ccgctccggc tccaggccga gcttctcggc
     1801 gagcgcgaag gcctcgcagg tcgcgatcat cgtcgcaccc agcaccatgt tgttgcagat
     1861 cttggccgcc tggcccgccc catggtcacc ggcgcggatg gtgatccgcg acatcgggcc
     1921 gatgatgctc tcgatcgccg cgaagtcggc ctcgtcgcag ccgaccatga aggcgagcgt
     1981 gccggcctcg gcgccggcct gcccgccgga gacgggcgca tcggcgaacc ggaatcccgc
     2041 ggatttggcc tgggcggcca cggcgcgggc gctctccacg tcgatcgtgg agcagtcgat
     2101 cagcagcgcg ccgggcttgg catgggcgag gatgcccttc ggatcgagat aggcgccgcg
     2161 cacatgcggg ccggccggca gcatggtgac gacgagctc
//
LOCUS       DATAJL010000987         2035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112630,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000987 DATAJL010000000
VERSION     DATAJL010000987.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112630"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..861)
                     /locus_tag="VHN39_18630"
     CDS             complement(<1..861)
                     /locus_tag="VHN39_18630"
                     /inference="COORDINATES: protein motif:HMM:NF020068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="POTRA domain-containing protein"
                     /protein_id="HEX2818416.1"
                     /translation="MSGSAFAQTAPGGAPATPPVAGVSAPELNPATRVTPPTAARDAD
                     IFTPEPPGPCPLADSTVEITLASVNFRGSTALKAEDFSRTYRDFVGKPQKVGVICEIR
                     DRAAAALFDRGILARVEIPEQRIASGALILDVIEAHVVNVRVRGDIGPAQAAVERYVE
                     KLRGMKPFDMRKAQRYILLASDIPGVRVRAAVKPSISPERGAVDIDVSVTRAEFTVVG
                     NAQNLGSKTVGRWGGLVRADARSFTPLGEDTALVAFHTLDSNEQWVVQLLEAARIGGD
                     GWIGRLSAVYG"
     gene            1133..>2035
                     /locus_tag="VHN39_18635"
     CDS             1133..>2035
                     /locus_tag="VHN39_18635"
                     /inference="COORDINATES: protein motif:HMM:NF024827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiheme c-type cytochrome"
                     /protein_id="HEX2818417.1"
                     /translation="MGRGGVFGLTGLVCAALAAAAAVGLTAAAWADPETSAAGRVGTH
                     EGVASCAGSTCHSRPVASGLVVRQNELITWQDQHSDAGAHSRAWRVLTQPRAQAIVQR
                     MGLTGPAQSAPVCLGCHADPAPAGQRGARFQISDGVGCEACHGGSGGWIASHYAVGAT
                     HAANISRGLVALDDPKARAARCLDCHFGGSGPNQFVTHQIMAAGHPRIAFELDLFTSL
                     QKHHDIDADYLARHKESPGGVKTWAVGQAMALDRTLTLYGPKNPPGAFPEFVFFDCQS
                     CHRTISEDPKVKLTVEANPARPIPL"
BASE COUNT          323 a          707 c          692 g          313 t
ORIGIN      
        1 gccatagacc gctgagaggc gaccgatcca gccgtcgccg ccgatccgag cggcctccag
       61 gagctgaacc acccattgct cgttggagtc cagggtgtgg aaggccacca acgcggtgtc
      121 ttcgcccagc ggcgtgaaac tgcgggcgtc tgcgcggacc agaccgcccc agcggccgac
      181 ggtcttcgaa ccgaggttct gcgcgttgcc gaccacggtg aactcggcgc gggtcaccga
      241 aacgtcgatg tcgacagcgc cgcgctcggg gctgatggag ggcttgaccg cggcgcgcac
      301 gcgcacgccc gggatatcgg aggccagcag gatgtagcgc tgggccttgc gcatatcgaa
      361 cggcttcatg ccacgcagct tctcgacgta gcgctcgacg gcggcctggg ccgggccgat
      421 gtcgccgcgc acgcggacat tgaccacatg agcctcgatg acgtcgagga tgagcgcgcc
      481 gctcgcaatc cgttgctcag ggatttcgac gcgggccagg atgccgcggt cgaagagagc
      541 ggccgccgca cggtcgcgga tctcacagat cacgcccacc ttctgcggtt tgccgacgaa
      601 gtcgcggtag gtgcgcgaga aatcctcggc cttcagcgcc gtcgagccgc ggaaattgac
      661 cgaggccagc gtgatttcga cggtggagtc cgccagcggg cacgggccgg gcggctcagg
      721 cgtgaagatg tcggcgtcgc gcgccgccgt tggcggggtg acacgcgtag caggattcag
      781 ttctggtgcg gaaaccccgg cgaccggagg cgtggctggc gcaccgcccg gcgcagtctg
      841 tgcaaatgct gaccctgaca cggtcagcgc ggtcgtcgcg attgccagaa gcgcgcgagc
      901 cttagggcct acgcgaggcg cctccatgcg tagcctcccc caactcaacc aatttcaatg
      961 cttgggatga cggtgttttg caatggtttt gttgggttaa cagcaacatc gcgcctcgtt
     1021 tgaaagctaa cttacgctgt ccactcgggc cttcatgacg cgcgccaata ctgctaccta
     1081 agcttgggac gggggtctaa gattcccgtt tgagtgcatc gttggagcgg cgatggggcg
     1141 gggaggcgtt ttcggtctga cgggcctggt gtgcgccgcg ctggcggctg cggccgccgt
     1201 gggcctgacg gcggcggcct gggccgatcc cgaaacctcc gccgccggcc gcgtgggaac
     1261 ccacgagggg gtcgcctcct gcgccggctc gacctgccac agccgtccgg tggcgagcgg
     1321 cctggtggtg cgccagaacg agctgatcac ctggcaggac cagcacagcg acgccggcgc
     1381 ccacagccga gcctggcggg tcctgaccca gcctcgcgct caggccatcg tccagcgcat
     1441 ggggctcacc ggccccgccc agagcgcgcc ggtctgtctg ggctgccatg ccgacccggc
     1501 gcccgccggt cagcgcggcg cccggttcca gatctcagac ggcgtcggct gcgaggcctg
     1561 ccacggcggg tccggcggct ggatcgccag ccactacgcc gtgggcgcga cccacgcggc
     1621 caatatctcg cgcggactgg tggcgctgga cgatcccaag gcccgcgccg cccgctgcct
     1681 cgactgccac ttcgggggtt ccggacccaa ccagttcgtg acccaccaga tcatggccgc
     1741 cggccacccg aggatcgcct tcgaactcga cctcttcacc agcctgcaga agcaccacga
     1801 catcgacgcc gactatctgg cccgccacaa ggagagcccc gggggcgtga agacctgggc
     1861 ggttggccag gccatggcgc tcgaccgcac cctgacgctt tacggcccca agaacccgcc
     1921 cggcgccttc ccggagttcg tcttcttcga ttgccagagc tgccaccgca ccatctcgga
     1981 ggacccaaag gtcaagctga cggtggaggc caatcccgcc cggccgatcc cgctg
//
LOCUS       DATAJL010000988         1998 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112661,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000988 DATAJL010000000
VERSION     DATAJL010000988.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112661"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            109..966
                     /locus_tag="VHN39_18640"
     CDS             109..966
                     /locus_tag="VHN39_18640"
                     /inference="COORDINATES: protein motif:HMM:NF039614.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase-related protein"
                     /protein_id="HEX2818418.1"
                     /translation="MDATTCVCFRCCQGSLKPASSMSRPMYRFNQTIVRSPAQSVCRG
                     LRAHDGVDPTYEGIEAEHSAYVTALRDAGAEVTILPPLEDFPDSIFVEDPALVFSEGA
                     IVLRPGARSRRGETETIAPTLRGIFDRVLDLPGEAFADGGDVLTTPSSVMIGLSARTD
                     RAGAKALRERLDMLGRKSEIVATPDGVLHFKSDCSLTDDETILTTRRLAASGVFQGKF
                     RELLVPEGEEAAANALRINDVLLVGADFPQTIDLLTDAGYRVVPLSTREIGKIDAGLS
                     CMSLRWFAP"
     gene            complement(1115..>1998)
                     /locus_tag="VHN39_18645"
     CDS             complement(1115..>1998)
                     /locus_tag="VHN39_18645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="AAA-associated domain-containing protein"
                     /protein_id="HEX2818419.1"
                     /translation="GGMRQRVGLARALVVDPTILLMDEPFSALDVLTAETLRTDLLDL
                     WCEGRMGIQSILMVTHNIEEAVLMCDRILVFSSNPGRIVAEIKVDMPQPRNRQNPAFR
                     RLVDSIYARMTQRGAADERQNDGLFPGMGIGMVLPRVSTNTMAGLMEAVSAQPFNGKA
                     DLPDLAEALHFEADELFAVAETLQLLRFAELEGGDIRLTADARHYADADVDGRKQLFA
                     QHLITYVPLAGHIRRVLDERTSHQAPGRRFRDELEDLMSEEDADQTLKGVINWARYAE
                     AFAYDEGADLFTLDDPS"
BASE COUNT          336 a          641 c          666 g          355 t
ORIGIN      
        1 ccatgctttt agcatggcgc agatgaccaa ccgcaccaac tcatcgccat catgtctcaa
       61 ggaccaatgt gcgactgcgg aggttagccg ccgccaagaa gccgacgagt ggacgcaact
      121 acctgtgtgt gcttccgctg ctgccaaggt tccctcaagc ctgcgagcag catgtcccgc
      181 cccatgtacc gtttcaacca gaccatcgtc cgcagcccgg cccagtcggt ctgcagggga
      241 ttgcgggcgc acgatggggt cgatccgacc tatgagggga tcgaagcgga gcacagcgcc
      301 tacgtgaccg ccctgcgcga tgccggcgcc gaggtgacga tcctgccgcc gctcgaggat
      361 tttccagact caatctttgt tgaggatccc gccctggttt tcagcgaggg cgcgatcgtg
      421 cttcgacctg gcgcccgcag ccgccgcggc gagacggaga cgatcgcgcc gaccctgcgg
      481 ggcatctttg atcgggttct cgaccttccg ggagaggcct tcgcagacgg cggcgacgtg
      541 ctgactacgc ctagctcggt gatgatcggc ctttcggctc gaaccgaccg cgctggcgcg
      601 aaggccctta gggagcgtct cgacatgctg ggtcgcaaga gtgagatcgt cgccacgccg
      661 gacggtgtct tgcacttcaa gtccgactgt tccctgaccg atgatgagac catcctgacg
      721 acgcgccgcc tggccgcctc cggggtgttc caaggcaagt tccgcgaact cctcgtcccc
      781 gaaggcgaag aggcggcggc caatgcgctg aggatcaatg acgtcctgtt ggtcggcgcg
      841 gactttccgc aaacaatcga cctgttgacc gacgccggat accgggtcgt tccgctctcc
      901 acccgcgaaa tcggcaagat agatgccggc ctgtcctgca tgtccctgcg gtggttcgcc
      961 ccatagggtt ccatcgggcg aggatatcag tttggcgccc gaaagcggac tctccgaacg
     1021 tccgctttgg ggggaaagcg gaccttcacg cctcgcccga aaccggacct tccatcgtca
     1081 agctgagggc aacgccccag cgtcggatca agcctcagct tggatcgtct agcgtaaaaa
     1141 ggtcagcgcc ttcgtcgtaa gcgaaggctt cggcgtagcg ggcccagttg atcacgcctt
     1201 tgagcgtctg gtcggcgtcc tcctccgaca tcaggtcctc cagctcatcg cggaatctgc
     1261 gccccggcgc ctggtgtgat gtccgctcgt ccaacacccg gcggatgtgg ccggccagcg
     1321 gcacataggt gatcaggtgc tgggcgaaga gctgcttgcg gccatcgacg tcggcgtcgg
     1381 cgtagtgccg cgcatcggcg gtcaggcgaa tatcgccgcc ttccagttcg gcgaaccgca
     1441 ggagctgcag ggtctcggcg acggcgaaca gttcgtcggc ctcgaagtgg agcgcctccg
     1501 cgagatcggg gagatcggcc ttgccgttga acggctgggc gctgaccgct tccatcaggc
     1561 cggccatggt gttggtggag accctgggga ggaccatgcc gatgcccatg ccggggaaga
     1621 ggccgtcgtt ctgccgctcg tccgccgcgc cgcgctgggt catgcgcgcg tagatgctgt
     1681 ccaccagccg gcggaaggcg gggttctggc ggttgcgggg ctgcggcatg tcgaccttga
     1741 tctcggcgac gatgcggccg gggttggacg agaagaccag gatgcggtcg cacatcaaca
     1801 ccgcctcctc gatattgtgg gtgaccatca ggatcgactg gatgcccatc cggccctcgc
     1861 accagaggtc cagcaggtcg gtgcgaaggg tctcggcggt gagcacgtcc agggccgaga
     1921 agggctcgtc catgagcagg atggtgggat cgaccaccag ggcgcgggcc aggccgacgc
     1981 gctggcgcat gccgccgg
//
LOCUS       DATAJL010000989         3374 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127697,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000989 DATAJL010000000
VERSION     DATAJL010000989.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3374)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3374)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127697"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VHN39_18650"
     CDS             complement(<1..294)
                     /locus_tag="VHN39_18650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818420.1"
                     /translation="MTDQNAIRDDIAFMRALAEEGRQGPLVGGSILLASGLCFGTASL
                     AIWANQTFDLVTSSWSFAGTWMISLAVFLGFLFFSKATRGPRAGASRAIGVAWS"
     gene            complement(397..2184)
                     /locus_tag="VHN39_18655"
     CDS             complement(397..2184)
                     /locus_tag="VHN39_18655"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-acyl-CoA synthetase"
                     /protein_id="HEX2818421.1"
                     /translation="MPLKANLQREWRFLRGLNRTLKRVKSIAPDSPNLICDDLQAAVD
                     QWRDRTAMTFEGRTVSYGELDAIANRFAHWGKGLNLRRGQTVALFMPNRLEYFAIWYG
                     LSKIGVVTALINSQLSGLALAHCLNISQASCIIVDAETSPTFETARSLLDKPLAQWIF
                     GPAHGDQRDLVQALKSCSQLPPDKIVREDIRGRDTALLIFTSGTTGLPKAARITHVRA
                     QLYMRGFAGSTGARASDRIYVALPLYHATGGLCALGAALLNGGSVFLRRKFSATHFWG
                     EAVDEQCTMFVYIGELCRYLVNQPPSDNETRHKIRMAFGNGLRPDIWPVMKQRFRIPE
                     ILEFYGSTEGNVSMFNFDGREGAIGRAPKWLRKRFNVRLVRFDLETEEAVRGTNGLCL
                     EAGAGQIGECVGQIGGDARSEYTGYVDKAASEKKILHDVFEKGDRWFATGDLMTTDAD
                     GYFYFVDRIGDTYRWKGENVSTGEVSERLLGSPGVKEANVYGVAVTGAEGRAGMAGLV
                     VGPEFDMKQFGDEVARELPPYAQPLFVRILPELETTGTFKTRKMDLIADGFDPGKIKG
                     PLYFHDARKGYVKVTKGLFEKISAGAVKL"
     gene            complement(2543..2650)
                     /locus_tag="VHN39_18660"
                     /pseudo
     CDS             complement(2543..2650)
                     /locus_tag="VHN39_18660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517412.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ClpX C4-type zinc finger protein"
     gene            2935..>3374
                     /locus_tag="VHN39_18665"
     CDS             2935..>3374
                     /locus_tag="VHN39_18665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818422.1"
                     /translation="MSNDFSPINTPETETPMFAGTPSWERGKKRRSFGSRGSRVAAEP
                     RSFAPEYAAEPGDPIPTRPVTLSEDARAYEARMDTVDPTDTTFASGATFADRTARKGN
                     GAAPIMVAAGIILVGGLAAGGWYALQPHNTGVAELTPGSPATTTT"
BASE COUNT          560 a         1087 c         1151 g          576 t
ORIGIN      
        1 ggaccaggcg acgccgatgg cgcgcgaggc gcccgcgcgc ggccctcggg tggccttgct
       61 gaagaacagg aaacccagga agaccgccag gctgatcatc catgtcccgg cgaaactcca
      121 actggaggtc accagatcga aggtctgatt ggcccagatc gccaggctgg cggtcccgaa
      181 gcagaggccc gaggccaaaa ggatcgaacc gccgaccagc ggcccctgcc ggccctcctc
      241 ggccagggcg cgcatgaagg cgatgtcgtc gcggatggcg ttctggtcgg tcatgggtcc
      301 agccttgttc aggtcgatgg ctgggttata gatgaagtac tttgcgatgt aaagtacttt
      361 ttcatcctcc ttgaaccact catgcggcgg tgcggatcag agcttcacgg cgccggcgga
      421 gatcttttcg aagaggccct tggtgacctt cacgtagccc ttcctggcgt cgtggaagta
      481 gagggggcct ttgatcttgc cgggatcgaa gccgtcggcg atcaggtcca tcttgcgggt
      541 cttgaaggtg ccggtggtct cgagttccgg caggatgcgc acgaacagcg gctgagcgta
      601 gggcggcaac tcgcgggcca cttcgtcgcc gaattgcttc atgtcgaact cggggcccac
      661 cactaggccc gccatgccgg cgcgcccctc ggcgccggtc accgcgacgc cgtagacgtt
      721 ggcctccttg acgcccggag agcccagcag gcgctcggac acctcgccag tggagacgtt
      781 ctcgcccttc cagcggtagg tgtcgccgat ccggtcgacg aaataaaagt agccgtcggc
      841 gtcggtcgtc atcaggtcgc cggtggcgaa ccagcgatcg cctttttcga agacgtcgtg
      901 caggatcttc ttctcagacg cggccttgtc gacgtagccg gtatattcgc ttcgggcgtc
      961 gccgccgatc tggccgacgc attcgccgat ctggccggcc ccggcctcga ggcagagacc
     1021 gttggtcccg cgcacggcct cctcggtctc gaggtcgaac cgcaccaggc ggacgttgaa
     1081 acgcttgcgc agccacttgg gcgcccgccc gatggcgcct tcgcggccgt cgaagttgaa
     1141 catcgacaca ttgccctcgg tggacccgta gaactccagg atctccggga tgcggaagcg
     1201 ctgcttcatc accggccaga tgtcggggcg caggccgttg ccgaaggcca tgcggatctt
     1261 gtggcgagtc tcgttgtcgc tgggcggctg gttgaccagg tagcggcaga gctcgccgat
     1321 atagacgaac atcgtgcact gctcatcgac ggcctcgccc cagaagtggg tcgcggagaa
     1381 cttgcggcgc aggaagaccg agccgccgtt caggagcgcg gcgcccagcg cacagagccc
     1441 gccggtggcg tggtagagcg gcagcgccac atagatgcgg tctgaggccc tggcgccggt
     1501 cgagcccgcg aaacctcgca tgtagagctg ggcccggacg tgggtgatgc gggcggcctt
     1561 gggcaggccc gtggtgccgg aggtgaagat caggagcgcg gtgtcgcggc cgcggatgtc
     1621 ttcgcgcacg atcttgtcgg gcggcagttg gctgcagctt ttcagggcct ggaccaggtc
     1681 gcgctggtcg ccgtgggcgg gaccgaagat ccactgcgcc aggggcttgt cgagcaggct
     1741 cctggcggtc tcgaaggtgg gcgaggtctc ggcgtcgacg atgatgcagc tggcctggga
     1801 gatattcagg cagtgggcga gcgccaggcc cgagagctgg ctgttgatca gggcggtgac
     1861 cacgccgatc ttcgacaggc cgtaccagat cgcgaaatat tccagccggt tgggcatgaa
     1921 gagcgcgacc gtctggccac gcctgaggtt caggcccttg ccccagtggg cgaagcggtt
     1981 ggcgatggcg tcgagttcgc cgtagctcac cgtccttccc tcgaaggtca tggcggtgcg
     2041 gtcgcgccac tgatcgaccg cggcctgcag atcgtcgcag atcaggttgg ggctatccgg
     2101 cgcgatcgac ttcacgcgct tcagcgtccg gttcagcccg cgcaggaaac gccactcgcg
     2161 ctgcagattg gcctttagcg gcatagatgg ctccggtgag gccgccagct tgcggatgcc
     2221 gcggacgccg ggtcaagttt ttgagcggtc ggggtcggcc acggcgcgcg gcgggccggg
     2281 accgcggcgc cggagacaca aatagttaag ggcggttaag accttaggag aaccgctccc
     2341 aggccgactg gcgggaaacc cccagatgcg cgccgatgtc ggcccagctc acctcgcggc
     2401 tgcgcagggt gtcgacgacc tgttgcagga agtcgcggct ggcgtcggcg gcgaagttca
     2461 ccgagcccat cagcaagagc agctggtcgg tggaacgctc caggggcttc ttgtagccct
     2521 tgtcggtgag ggggcggcca tcgatgatct cgacgcacat tcccacgcac tcgtcgcaga
     2581 tgaagacgaa ggggccggcg atcagcttgg ccacgtcatg ctgcgacttg ccgcagaacg
     2641 agcagtgcaa ggcgtccgga agcttgcgtt tggtggcgcg ctcgagcttg cgccgcgcct
     2701 tgatctcttc gcgggtgcgc tgggctttgg gttcacccat ggcgacctcc atgtcaggac
     2761 attcctgact gtcaggccta tcctgacaag gggcgctctg tcaagactcc cctgacgcac
     2821 gcgaaaggtc catcggagaa taaggtcatt tggcgccggg gccgcgcgat ccggaacccc
     2881 cacaggactc tgccgtttgg gtgaccgagc attttccctt ggagggatca catcatgtcc
     2941 aacgatttca gtccgatcaa cacgcccgaa accgaaaccc cgatgttcgc cggcaccccg
     3001 tcgtgggagc gcggcaagaa gcgtcgcagc ttcggcagcc gtggcagccg cgtggcggcc
     3061 gagccccgca gcttcgcgcc tgagtacgcc gccgagcctg gcgaccccat tccgacgcgt
     3121 cccgtcaccc tttccgaaga cgcccgggcc tatgaggcgc gcatggatac ggtcgacccg
     3181 accgacacca ccttcgcctc cggcgcgacc ttcgccgacc gcaccgcccg caagggcaat
     3241 ggcgcggcgc cgatcatggt cgcagccggc atcatcctgg tcggcggcct ggccgccggc
     3301 ggctggtatg ccctgcaacc gcacaacacc ggcgtcgccg aactgacgcc ggggtcgccc
     3361 gccaccacga ccac
//
LOCUS       DATAJL010000990         2866 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_127953,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000990 DATAJL010000000
VERSION     DATAJL010000990.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127953"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VHN39_18670"
     CDS             complement(<1..648)
                     /locus_tag="VHN39_18670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519206.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2818423.1"
                     /translation="MAEDYQMPKGELMRGKRGVVTGVANHQSIAWGIASQLAAQGAEM
                     AFLHLPGMERRVEPLAESIGVKVLAPVDVTDDAAMDTAFGVVEKAFGQIDFFVHAIAS
                     ASREELKGSFVDNTTRDGFLRAMNISAFSFVDCARRAAALMPETGGSILTLTYMGSER
                     AIPNYNTMGVAKAALEASVRYAARDLGPRGIRVNALSPGAMKTLSLAGISGGRGML"
     gene            complement(727..1938)
                     /gene="fabB"
                     /locus_tag="VHN39_18675"
     CDS             complement(727..1938)
                     /gene="fabB"
                     /locus_tag="VHN39_18675"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HEX2818424.1"
                     /translation="MRRVVVTGMGIVSSIGNNANEVLASLREAKSGVVAAPEYAELGF
                     RCQVHAPPQIDWESMVDRRAARFLAQGTAFGHLAMEQAIADSGLEEAEVSNERTGLIV
                     GSGGPSTRAIVEAAEITRTKGPKRVGPFAVPKAMSSGASAVLATWFKIKGLNFSISSA
                     CATSAHCIGVGYEQILMGKQDVVFAGGVEELDWTLSVMFDAMGAMSSNFNATPAVASR
                     AYDKDRDGFVIAGGGGIVVLEEYEHAKARGAKIYGEIIGYAANSDGFDMVAPSGEGAV
                     RCMKLAMSTIGGRTIDYLNPHGTSTPVGDSREMEAVRGVFGAKPPLISSTKSLTGHSL
                     GAAGAQEAIYCLLMLNNGFAAESANIETLDPEFADLPILLKRADGPLETVMSNSFGFG
                     GTNGCLVMAKV"
     gene            complement(1963..2478)
                     /gene="fabA"
                     /locus_tag="VHN39_18680"
     CDS             complement(1963..2478)
                     /gene="fabA"
                     /locus_tag="VHN39_18680"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006271487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019171 -
                     (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-[acyl-carrier-protein] dehydratase
                     FabA"
                     /protein_id="HEX2818425.1"
                     /translation="MTDAKAQDHYSFEELMTCARGEMYGPGNAQLPAPPMLLFNRITK
                     ISDDGGQHGKGYIEAEFDIDPSLWFFGCHFIGDPVMPGSLGLDALWQLVGFYLGWIGG
                     KGRGRALGCGEVKFGGEVTPNIKTVTYKIEMKRVINRRLVMGIGDGVLEADGVPIYWA
                     ADLRVGLYQRP"
     gene            complement(2600..>2866)
                     /locus_tag="VHN39_18685"
     CDS             complement(2600..>2866)
                     /locus_tag="VHN39_18685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEX2818426.1"
                     /translation="EGTLAWVHKRVTDGRRTTMNTTALPIGLLKRPKDGFRVAAYLNS
                     RSLATLDHCDKGWCKVKADHASGWVREGVLWGTTDTAQCHGVSH"
BASE COUNT          442 a          969 c          953 g          502 t
ORIGIN      
        1 cagcatgccg cgcccgccgg agatgccggc caacgacagg gtcttcatgg cgccgggcga
       61 gagcgcgttc acccggatgc ccctgggccc caggtcgcgg gcggcatagc ggaccgaggc
      121 ctccagcgcc gccttggcga cgcccatggt gttgtagttc gggatcgccc gctccgagcc
      181 catgtaggtc agtgtcagga tcgagccgcc ggtctccggc atcagggccg cggcgcggcg
      241 cgcgcagtcg acgaagctga aggccgagat gttcatcgcc cgcaggaagc cgtcccgcgt
      301 ggtgttgtcg acgaaggagc ccttcagttc ctcccggctg gcggacgcga tggcgtggac
      361 gaagaagtcg atctggccga acgccttctc gaccaccccg aaggccgtat ccatggccgc
      421 gtcgtcagtg acgtcgacgg gcgccaggac cttgaccccg atgctctcag cgagcggctc
      481 gacccggcgc tccatgcccg gcaggtgcag gaaggccatc tccgcgccct gggcggccag
      541 ctggctggcg atgccccagg cgatggactg gtgattggcg accccggtga cgaccccgcg
      601 cttgccgcgc atgagctcgc ccttgggcat ctgatagtcc tcggccacgt ggcgtctccc
      661 gtcgctcggt tgttgggtcg gtttgtggac gatccatctc cgggtgtcat cggagatgtt
      721 ggggcgtcag accttggcca tcaccaggca gccattggtc ccgccgaagc cgaagctgtt
      781 ggacatcacc gtttccagcg gcccgtcggc gcgtttcagc aggatcggca ggtcggcgaa
      841 ttcggggtcg agggtctcga tgttggcgct ctcagcggcg aatccgttgt tgagcatcag
      901 gaggcagtag atcgcctcct gcgccccggc cgcgcccagg ctgtggccgg tcagggactt
      961 ggtggacgag atcagcggcg gcttcgcgcc aaacacgccc ctcacagcct ccatttcccg
     1021 gctgtcgccc accggcgtcg aagtgccgtg cgggttcaga tagtcgatgg tccggccgcc
     1081 gatggtcgac atggcgagct tcatgcagcg caccgcgccc tcgccggacg gggcgaccat
     1141 gtcgaagccg tcggagttgg cggcgtagcc gatgatctcg ccatagatct tcgcgccgcg
     1201 ggccttggcg tgctcgtact cctccagcac cacgatcccg ccgccgccgg cgatgacgaa
     1261 gccgtcgcgg tccttgtcgt aggcgcggct agccaccgcc ggggtcgcgt tgaagttcga
     1321 gctcatggcg cccatggcgt cgaacatgac gctcaaggtc cagtcgagct cctcgacgcc
     1381 gcccgcgaac accacgtcct gcttgcccat taggatttgc tcatagccga ccccgatgca
     1441 gtgggccgag gtggcgcagg ccgacgagat ggagaagttc aggcccttga tcttgaacca
     1501 ggtggcgagc acggcgctcg cgcccgagct catcgccttg ggcaccgcga aagggccgac
     1561 ccgcttgggg cccttggtgc gggtgatctc ggcggcctcg acgatggccc gggtcgaggg
     1621 gccgccggag ccgacgatca ggccggtgcg ctcgttggag acctcggcct cttccaggcc
     1681 gctatcggcg atcgcctgct ccatggccag gtgcccgaag gccgtgccct gggccaggaa
     1741 ccgcgcggcg cggcggtcga ccatggattc ccagtcgatc tgcggcgggg cgtgcacctg
     1801 gcagcggaag ccgagctcgg catattccgg cgcggccacc acgccggact tcgcctcccg
     1861 caaggaagcg agcacttcat tggcgttgtt cccgatggac gagacgatgc ccattccggt
     1921 gacgacgacg cggcgcatgg ttccttccgg tttcctcggc ccttaggggc gctgatagag
     1981 gccgacgcgt aagtcagccg cccaatagat gggaactccg tcggcctcca acaccccgtc
     2041 gccgatcccc atgaccagac ggcggttgat gacccgcttc atttcgatct tgtaggtgac
     2101 ggttttgatg ttgggggtga cctcgccgcc gaatttcacc tcgccgcagc cgagcgcgcg
     2161 gccacgcccc ttgccgccga tccagcccag gtagaagccg accagttgcc agagcgcgtc
     2221 aagaccgagg cttccgggca tcaccgggtc gccgatgaag tggcagccga agaaccagag
     2281 gctgggatcg atgtcgaact cggcctcgat gtagcccttg ccgtgctggc ccccgtcgtc
     2341 gctgatcttg gtgatgcggt tgaacagcag catcggcggc gccggcagct gggcgttgcc
     2401 cggcccgtac atctcgccgc gggcgcacgt catcagctcc tcgaagctgt agtggtcctg
     2461 ggccttggcg tccgtcatct agcgttccgt ccccgagcct tcttacaaaa ggctccattc
     2521 aggcaataga ccatgacggc tgtcatggtc ggtgggggat tggccgtagc agagcataac
     2581 cttgcgctca atggcgcgct caatggctca ccccatgaca ttgggccgtg tccgtcgtgc
     2641 cccagagcac cccttcacga acccagccgg aggcgtgatc ggccttcacc ttgcaccagc
     2701 ccttgtcgca atggtccaac gtcgccaacg aacgggagtt caaataggcc gccacgcgga
     2761 acccgtcctt gggccgcttc aacagcccga tcggtagagc ggtggtgttc atggtggtgc
     2821 gccggccgtc ggtcacgcgc ttgtgcaccc aggcgagcgt cccctc
//
LOCUS       DATAJL010000991         1772 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_112931,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000991 DATAJL010000000
VERSION     DATAJL010000991.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112931"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            372..1001
                     /locus_tag="VHN39_18690"
     CDS             372..1001
                     /locus_tag="VHN39_18690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2818427.1"
                     /translation="MRESQAAEARPYHHGDLRRALIDAASRVLEAEGPSALSLRAVAR
                     EAGVSPAAPYHHFKDKTELLEAVAHEGWTLLDQALAAAKAKAPSAQDAMNELGVAYVC
                     FARDNPALYRVMYDTARDREDLPDQMQGDKDSAYCKVRDTLVEAGADPGDTLDIELAT
                     TAAWCSAHGLAEMAGFKQFQHLKDACGGERAFFKAIFQHMGLVPKHLAD"
     gene            1012..>1772
                     /gene="gluQRS"
                     /locus_tag="VHN39_18695"
     CDS             1012..>1772
                     /gene="gluQRS"
                     /locus_tag="VHN39_18695"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012640436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HEX2818428.1"
                     /translation="MSGPPFVTRFAPSPTGYLHRGHAFSALTAFDAAQTAGGRFVLRL
                     EDIDHIRCRPDYEAAIYVDLAWLGITWDEPVRRQSEHMADYSAALDRLTERGLTYRCF
                     RTRREIAEAIGGAPHGAMEVFHGAPLPPDEEAARVEAGEPYAWRLSLAAAERALGGFG
                     ALTFVEEGAGAGGEHGVIRANPALGGDVLLTRKDIGVAYHLAVVVDDALQGVNHIIRG
                     QDLFEAAHVQRLLQALLALPTPTYRHHRLLTGPDG"
BASE COUNT          308 a          611 c          578 g          275 t
ORIGIN      
        1 gcatagatgc gaatttgtgc agtgcggcca ttcatttttg catgcatccg ggatggctcc
       61 cggcggcgac gacgaaaaag ggcccgcgag gggcccttgt ccggtcggcg aagatcggga
      121 gcctagttgc tgatggccag cgagaacgcc gcggcgagcg agccgcccat gcccaggatc
      181 agggccggag cgatcttgtc gaaaaacctt gcgagaaaca tgacacacac ctttgagttg
      241 gaaccccctc cttcccttgg aacacaaggg ggagagaagt atttgttatc tgaacagcgc
      301 taagataaca ttgatctgaa cggcgtcaag atatctttac ggcgcccaga tagagattta
      361 gagtgagggc gatgagagaa tctcaagctg cggaagcccg cccctatcac cacggcgatc
      421 tgcgtcgcgc gttgatcgac gccgcaagcc gagtcctgga ggccgaaggg cccagcgcgc
      481 tctcgctccg cgccgtggcc cgcgaggccg gggtcagtcc cgcagcgccc taccaccact
      541 tcaaggacaa gaccgagctc ctggaagccg tcgcccacga gggctggacc ctgctggacc
      601 aggccctggc agccgccaag gccaaggcgc cgtccgccca ggacgccatg aacgagctgg
      661 gcgtggccta tgtctgtttc gcccgcgaca acccggccct ctaccgggtg atgtacgaca
      721 cggcacgcga ccgcgaagac ctgcccgacc agatgcaggg cgacaaggac agcgcctact
      781 gcaaggtccg cgacaccctg gtcgaggccg gcgccgaccc cggcgacacc ctcgacatcg
      841 aactcgccac caccgcggcc tggtgttcgg cccatggcct ggccgagatg gccggcttca
      901 agcagttcca gcatctgaag gacgcctgcg gcggggaacg ggccttcttc aaggcgatct
      961 tccagcacat gggtctggtt cccaagcact tggcggacta gacgctggcg ggtgtctgga
     1021 ccgcccttcg tcacccgttt cgcgccttcg cccaccggct acctgcaccg ggggcacgct
     1081 ttttcagccc tgaccgcgtt cgacgccgcg caaaccgctg gcggccgctt tgtcctgcgc
     1141 cttgaggaca tcgaccacat ccgctgccgt ccggactatg aggcggcgat ctatgtggac
     1201 ctggcctggc tgggcatcac ctgggacgag ccggtgcgtc gacagtccga gcacatggcc
     1261 gactacagcg ccgccctgga ccgcctcacc gagcgcggcc tgacctaccg ctgcttccgc
     1321 acccggcgcg agatcgccga agctatcggg ggggcgccgc acggcgccat ggaggtcttc
     1381 cacggcgcac cccttccgcc ggacgaggag gccgcgcgcg tcgaggccgg cgagccctac
     1441 gcttggcgcc tgtcgctggc ggccgccgag cgggccttgg gcgggttcgg cgcgctcact
     1501 ttcgtcgaag agggggcggg cgccggcggc gagcacggcg tgatccgagc caaccccgct
     1561 ctgggcggcg acgtgctcct gacccgcaag gatataggag tcgcctatca cctggcggtg
     1621 gtcgtggacg acgccctgca gggggtgaac cacatcatcc gcggccagga cctcttcgag
     1681 gcggcccatg ttcagcggct gctgcaggcc ctgctcgccc tgccgacgcc cacgtaccgc
     1741 catcaccgcc tgctgaccgg gccggatgga ag
//
LOCUS       DATAJL010000992         2091 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_128322,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000992 DATAJL010000000
VERSION     DATAJL010000992.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128322"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VHN39_18700"
     CDS             <1..210
                     /locus_tag="VHN39_18700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818429.1"
                     /translation="LLLDRDVGVTTAISTSLRAVAANAGVMTLWGAIVAGALVLGSAP
                     ALVGLIFVVPVLGHATWHLYRKLVA"
     gene            complement(288..1391)
                     /gene="rsgA"
                     /locus_tag="VHN39_18705"
     CDS             complement(288..1391)
                     /gene="rsgA"
                     /locus_tag="VHN39_18705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007675736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEX2818430.1"
                     /translation="MTQKETLTLLSQYGWSQTLQHDFEPYAAQGLVPARVIVQQRNLY
                     RLVAETGEIEGRISGLFRHEAAEGGYPVTGDWVAVELKGDAAVIAHILPRATAFTRMA
                     AGTAKDMQVVAANVDMALLSASLNADLNLRRLERYLATAYESGAAPVILLTKADACDD
                     PEPLIESVREIAFGVPVLAVSVRTGQGLEALSALLAPGKTAVLLGSSGVGKSTLVNAL
                     AGVEKMATKEIREADAHGRHTTTHRELILLPSGALILDTPGMRELALWDSEAGVAAAF
                     AETTAQVEDIARGCRFRDCAHDKEPGCAVQAALADGTLDGERWRSFQKLQRELAHGVR
                     KEDPLAAAAERKRWAAVNKAGRQRTRDKRQIDD"
     gene            1602..2009
                     /locus_tag="VHN39_18710"
     CDS             1602..2009
                     /locus_tag="VHN39_18710"
                     /inference="COORDINATES: protein motif:HMM:NF045421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818431.1"
                     /translation="MASGGGVKDDPWTLTTPSGGSEYQAWRDESLDPPALVIQVGKTQ
                     LRYALAAIDDLHAMLKAAGDWAPLGGCDEQKPAAEGTVEAWGRSATNPVGGWYGLKKG
                     LRGRFGVYVPPVLEALDLAEVEKLPRNNRMRAL"
BASE COUNT          282 a          719 c          754 g          336 t
ORIGIN      
        1 ctgctgctcg accgcgacgt gggcgtgacc acggcgatct ccacctccct gcgcgccgtc
       61 gccgccaacg ccggggtgat gacgctctgg ggcgcgatcg tcgccggcgc gctggtcctg
      121 gggtcggccc cggcgctggt cgggctgatc ttcgtggtgc cggtgctggg tcacgccacc
      181 tggcacctct accgcaagct ggtggcctag ctccgccgcc tagtgtccca attcggaagt
      241 tcgctcggcg tatggccttg aaggaggcga acttcaaatc cagcgcacta gtcgtcgatc
      301 tggcgcttgt cgcgggtgcg ctggcgcccg gccttgttga cggccgccca gcgtttgcgc
      361 tcggccgccg cggccagcgg gtcttccttg cgcaccccat gcgccagctc gcgctgcagc
      421 ttctggaagc tgcgccagcg ttcgccgtcc agcgtcccgt ccgccagcgc cgcctgcacc
      481 gcgcagccgg gttccttgtc gtgggcgcag tcgcggaacc ggcagccccg ggcgatgtcc
      541 tccacctggg ccgtggtttc cgcgaaggcg gcggcgacgc cggcttccga gtcccacagc
      601 gccagctcgc gcatccccgg cgtatcgagg atcagcgcgc cggacggcag caggatcagc
      661 tcccggtgcg tggtggtgtg ccggccgtgg gcgtcggcct cgcggatctc cttggtggcc
      721 atcttctcga ccccggcgag cgcgttgacc agggtcgact tgcccacgcc cgacgagccc
      781 agcagcaccg cggtcttgcc gggcgcgagc agggcggaga gcgcctccag cccctgaccc
      841 gtacgcaccg agaccgccag gaccggcacg ccgaaggcga tttcccggac gctctcgatc
      901 agcggctcgg ggtcgtcgca ggcgtcggcc ttggtgagca ggatcacggg cgcagccccg
      961 ctctcgtagg ccgtggccag gtagcgctcc aggcgcctca ggttcaggtc ggcgttcagc
     1021 gaggcggaga gcagggccat gtcgacgttg gcggccacca cctgcatgtc cttggcggtg
     1081 ccggccgcca tgcgggtgaa ggccgtggcg cggggcagga tgtgggcgat caccgcggcg
     1141 tcgcccttca gctccaccgc cacccagtcg ccggtgaccg gatagccgcc ttccgccgcc
     1201 tcgtggcgga acaggccgga gatgcgcccc tcgatctcgc cggtctcggc gacgaggcgg
     1261 tagaggttac gctgctggac gatgacgcgg gccgggacga gcccttgcgc cgcatagggt
     1321 tcaaagtcgt gctggagcgt ctggctccag ccgtattggc tgagcaatgt cagggtttcc
     1381 ttttgggtca tgagccgttc aggcgtcgac cgcggaaatc ccgtcttttc gagagaggat
     1441 cggctgcttt acgcaacccg cacggcgacg cggcgaaggg cggcggcaat gggtttcatc
     1501 acgaaggctc ctcctcaggg gttggcgtcg gtgcgtggcg gaccttggcg gcaagcccat
     1561 cgcgcgtcaa ggatggcgct ggtcagtctt gggggtctgc gatggcgagc ggcggcggcg
     1621 tgaaggacga tccctggacc ctgaccaccc cctcgggcgg atcggagtac caggcctggc
     1681 gcgatgagag cctcgatccg ccggccctgg tgatccaggt cggcaagacc cagctgcgct
     1741 atgcgctcgc cgccatcgac gacctgcacg ccatgctgaa ggcggccggc gactgggcgc
     1801 ccctgggcgg ctgcgatgaa cagaagccgg ccgccgaggg cacggtcgag gcctggggcc
     1861 gttccgcgac caaccccgtc ggcggctggt acgggctgaa aaaaggcctg cgcggccgct
     1921 tcggggtcta tgtgccgccg gtgctggagg ccctggacct ggcggaggtg gagaagctgc
     1981 cgcgcaacaa ccgcatgcgg gcgctctgac cgtggccgag accccggacg tcgtgatgaa
     2041 tgaggcgacc caccgcttcg aggcctacct cggtgacgag acggccttca g
//
LOCUS       DATAJL010000993         7706 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_128348,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000993 DATAJL010000000
VERSION     DATAJL010000993.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 7706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7706
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128348"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..381
                     /locus_tag="VHN39_18715"
     CDS             <1..381
                     /locus_tag="VHN39_18715"
                     /inference="COORDINATES: protein motif:HMM:NF025595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4337 family protein"
                     /protein_id="HEX2818432.1"
                     /translation="VLSQDKATDVWGEYQADSLKKHIYGIAADAGGPKAAKYQDTAKE
                     QVTKQAEVKKQALEDEAERDKLLAVSRMHEHRHHWLTAAATLLEIGIAICTVAIITRR
                     RAFWLGSLGLGLVGLALFGAAYLL"
     gene            complement(382..972)
                     /locus_tag="VHN39_18720"
     CDS             complement(382..972)
                     /locus_tag="VHN39_18720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818433.1"
                     /translation="MTKFSAALATALILSAGLSACVSPTPYQPLVRGGASSGGYSESR
                     IEPNRWRVTFAGNTMTKRETVEGYLLFRAAELTLQNGDDWFAMVDRQTDAKSRSYLQP
                     DPFYNPWYGPGFGYWRPSWRYRGRGVAWRTWDPWFGDPFFADQGNVQTIQNFEASAEI
                     VTHKGAKPADDPRAFDAHAVVENLKPKIQYPTAKAS"
     gene            complement(1069..1473)
                     /locus_tag="VHN39_18725"
     CDS             complement(1069..1473)
                     /locus_tag="VHN39_18725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007668259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAPEG family protein"
                     /protein_id="HEX2818434.1"
                     /translation="MHPHSWVALVTLLSLLTYFWMSIRVPVARNKAGIQAPAMTGDPL
                     LERTIRAHYNTLEWLPIYLVSLWLFAIYWNDTVAAAMGVVWIVGRIAYAIGYAADAAK
                     RGPGFLIQSVATAVLLFGSLGRIIYILATVGA"
     gene            complement(1561..2793)
                     /locus_tag="VHN39_18730"
     CDS             complement(1561..2793)
                     /locus_tag="VHN39_18730"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018080740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEX2818435.1"
                     /translation="MAAKPIKKVVLAYSGGLDTSIILKWLQTEYGAEVITFTADLGQG
                     EEIEPARAKALAAGVKPENIFIEDVREEFVRDFVFPMFRANTVYEGQYLLGTSIARPL
                     IAKRQIEIARMLGADAVSHGSTGKGNDQVRYEVAYYALEPDIQVIAPWREWDFKSREA
                     LLEFAEKHQIQITKDKRGEAPFSVDANLLHSSSEGKVLEDPAVEAPEFVHMRTISPED
                     APDKATVFTLDFERGDPVAIDGVKMSPATLLTKLNELGHDNGVGRLDLVENRYVGMKS
                     RGVYETPGGTILLAAHRGVESITLDRGSAHLKDELMPRYAELIYNGFWFTPEREMLQA
                     AIDHSQAMVTGQVRVKLYKGNVSIIGRTSPYSLYDQDLVTFEEGKVAYDHRDATGFIK
                     LNALRLRVLAKRDKRVKS"
     gene            complement(2881..3192)
                     /locus_tag="VHN39_18735"
     CDS             complement(2881..3192)
                     /locus_tag="VHN39_18735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818436.1"
                     /translation="MPVLSYAGDALWVIALTIMFSASRAAWGETAGRDKLPFLGAQAP
                     RAIALWLLPAATFAVSLWLVLRAREAAGDMAVIVFGVRATLAALLALLHLRWLARSLR
                     P"
     gene            complement(3196..5109)
                     /locus_tag="VHN39_18740"
     CDS             complement(3196..5109)
                     /locus_tag="VHN39_18740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter Kup"
                     /protein_id="HEX2818437.1"
                     /translation="MADTAGDAPEASEESHHSHKQGLWALALGSLGVVFGDIGTSPLY
                     AMGAALSHIRGGVSQAGVLGIVSLIFWALIIVVTIKYVVFVMRADNKGEGGTLALMAL
                     AQRALGRRSTFVFLLGICGAALFYGDGLITPAVSVLSAVELLRDAPSVGHFFRPIVLP
                     LAGAILIGLFMVQSRGTASVGRFFGPIMVVWFLVLAVLGLVHIVQAPVILKALNPYFG
                     VHLLFSNGLLGFIILGSVFLAVTGAEALYADMGHFGKQPIRLAWLTMALPCLALQYFG
                     QGALVLTDPAAAKDPFFSIIPHFAYWPVLVLSIGATVIASQAVITGAYSVTQQAVQLG
                     LLPRIDIRRTSETVAGQIYVPSVNRMLMIGVLVLLVLFQTSANMASAYGIAVTGTMVI
                     TVLLEFIVARRLWKWSLAGALAFAIPLLLIDLSFLGANLVKVLDGGWFPLSFGAAIVL
                     MMWTWTRGAQILTDKTRRDSIPLLELSEILASRSMHRVPGAAIFLTSDASMAPVALMH
                     NLKHNKVLHEKNIVITIETAETPRVSDDKRVRIEPVNDDFKKVIVTYGFMESPNLPKA
                     LGLCRKLGLKFDIMATSFFLGRRSVVPSAQSGMPLWQDKLFIFLMKNAANPTDFYKIP
                     PGRVVELGTQVTI"
     gene            5320..6120
                     /locus_tag="VHN39_18745"
     CDS             5320..6120
                     /locus_tag="VHN39_18745"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2818438.1"
                     /translation="MDRRLALVTGASAGIGAAFARILASHGYDVALTARRADRLDKLA
                     EEISLRYGVEALTVTADLSEPEAPGQILDVLTAHGRTVDALVNNAGYGLPGAYADTRW
                     EDQRAVIQVMVTAPAELAHRVLPGMIHRRFGRIVNVASLAGLVPGAAGHTLYGAVKAF
                     GVRFSQSLHLETEAQGVHVSALCPGFTYSEFHDVAGTRAQITQSTPPWLWLGADEVAA
                     AGYEAVEANRPICVPGAPNKAIAAVVKLIPDDWALALMASQSSRFRKL"
     gene            complement(6121..6807)
                     /locus_tag="VHN39_18750"
     CDS             complement(6121..6807)
                     /locus_tag="VHN39_18750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEX2818439.1"
                     /translation="MIHWDFAVNFFVALFALLDPIGNVPVFAASTVGASGRERAQIAF
                     VISLFVMGFLTFFYFSGLSLLTFFGISLPAFRIAGGVILFVLGLKMIGDDFTAGFADA
                     AEATADDKRTYVRRRVEQMIVPFAMPLLIGPGAISTVIIYASQAKEYGLPGAALGIGA
                     IAAVSVATLASFLATPLIGRLLGKIGLSIIVRVLGLILCAMAVQFLLAGVADSTHGLI
                     RPEAAWPYAK"
     gene            6927..7619
                     /gene="pyrF"
                     /locus_tag="VHN39_18755"
     CDS             6927..7619
                     /gene="pyrF"
                     /locus_tag="VHN39_18755"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007673485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEX2818440.1"
                     /translation="MKADKRLIVPLDFPTADEARAVVAGLGDAVSFYKVGLELFATDG
                     MALARELKAQGKQVFLDWKLHDIPTTVQRAAAAISTAGCDFITVHAEPQVMAAAVRGR
                     GSSSLKILGVTVLTSLTDEDLKEMGYAEKARALVERRIHQAIAAGCDGVVASPHEAAL
                     ARALGGRDFLVVTPGVRPDWSAKNDQARAATPLDALKAGASHIVCGRPITAANDPRAA
                     ALRVAAEMSQAG"
     gene            complement(7629..>7706)
                     /locus_tag="VHN39_18760"
     CDS             complement(7629..>7706)
                     /locus_tag="VHN39_18760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012524050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1674 domain-containing protein"
                     /protein_id="HEX2818441.1"
                     /translation="EQGGPKGLEPTRFGDWERKGIAVDF"
BASE COUNT         1361 a         2509 c         2636 g         1200 t
ORIGIN      
        1 gtgctgagcc aggacaaggc caccgacgtc tggggcgaat accaggccga cagcctcaag
       61 aagcacatct acgggatcgc cgccgacgct ggcgggccga aggcggcgaa gtaccaggac
      121 accgccaagg agcaggtcac caagcaggcc gaggtcaaga agcaggcgct ggaggacgaa
      181 gccgaacgcg acaagctgct cgccgtcagc cggatgcacg agcatcgcca ccattggctg
      241 accgccgcgg ccaccctgct ggaaatcggc atcgccatct gcacggtggc gatcatcacc
      301 cggcgcaggg cgttctggct tgggtcgctc ggcctgggcc ttgtaggctt ggcgctgttc
      361 ggcgcggcct acctgctcta gctaggacgc tttcgccgtc gggtactgga tcttcggctt
      421 caggttttcc accaccgcat gggcgtcgaa ggcgcgcggg tcgtcggcgg gcttggcgcc
      481 cttgtgggtg acgatctcgg cggaggcctc gaaattctgg atggtctgga cgttcccctg
      541 atcggcgaag aaggggtcgc cgaaccaggg gtcccaggtg cgccaggcga cgccgcggcc
      601 ccgatagcgc caggacggcc gccagtagcc gaagcccggg ccgtaccagg gattgtagaa
      661 ggggtcgggc tgcaggtagc tgcgcgactt ggcgtcggtc tggcggtcga ccatcgcgaa
      721 ccagtcatcg ccgttctgca gggtcaactc cgccgccctg aagagcagat agccctccac
      781 ggtctcgcgc ttggtcatgg tgttgccggc gaacgtgacc cgccagcgat tgggctcgat
      841 gcggctttcc gaatagccgc cggaactggc gccgcctctg accaggggct gataaggcgt
      901 cggcgagacg caggcgctga gccccgccga caggatcaat gcggtggcca gggctgcgga
      961 gaacttggtc atcttgaagt tccgaagcga tagggtccct cgacgggcat gcccgaaaac
     1021 acttggccgc aattgtggtt gcccgatttc aggactgtgc gggtccggtt acgcgcccac
     1081 tgtcgccagg atgtagatga tgcgtcccag cgacccgaac agcaggacgg cggtcgccac
     1141 cgactggata aggaagcccg gcccgcgttt ggccgcatcg gcggcgtagc cgatggcgta
     1201 ggcgatgcgg ccgacgatcc agaccacgcc catggcggcg gccaccgtgt cgttccagta
     1261 gatggcgaag agccacagcg agaccaggta gatcggcagc cattcgagtg tgttgtagtg
     1321 cgcgcggatg gtccgctcga gcagaggatc gcctgtcatg gccggcgcct ggatgccggc
     1381 cttgttgcgg gccaccggca cgcggatgct catccagaaa taggtcagga gcgaaaggag
     1441 ggtgacgagc gccacccagc tgtgcggatg catgtggttt ccccgaaagc gtggcgaacg
     1501 aagcttcgca ttggcgggga gcttcgcacg tatcggggtt cggcgggaac cggctaagcg
     1561 ctaggacttc acccgcttgt cgcgcttggc caggacccgc aggcgcaggg cgttgagttt
     1621 gatgaagccc gtcgcgtcgc ggtggtcgta tgccaccttg ccctcttcga aggtcaccag
     1681 gtcctggtcg tagagcgaat aggggctggt gcgaccgatg atcgagacat ttcccttgta
     1741 gagcttcacc cgcacctggc cggtgaccat ggcctggctg tggtcgatgg ccgcctgcag
     1801 catctcccgc tcaggcgtga accagaagcc gttgtagatg agctcagcat agcgcggcat
     1861 cagctcgtcc ttcaggtggg cggacccacg gtcgagcgtg atcgactcga cgccccggtg
     1921 cgcggccagc aggatcgtgc cgccgggggt ctcgtagacc ccacgggact tcatgccgac
     1981 gtagcggttc tccaccaggt ccaggcggcc gacgccattg tcgtggccca gttcgttgag
     2041 cttggtcagc agggtcgccg gcgacatctt cacgccatcg attgcgaccg gatcgcccct
     2101 ctcgaagtcg agggtgaaga cggtggcctt gtccggcgcg tcctcgggcg agatcgtgcg
     2161 catgtggacg aattccggcg cctcgacggc cgggtcctcc aggaccttcc cctctgacga
     2221 tgagtgcagg aggttggcgt cgacgctgaa cggcgcctcg ccacgcttgt ctttggtgat
     2281 ctggatctgg tgcttctcgg cgaactccag cagggcctcg cgggacttga agtcccattc
     2341 ccgccagggc gcgatcacct ggatatcggg ctccagggcg taataggcca cctcatagcg
     2401 cacttggtcg ttgcccttgc ctgtcgagcc gtggctgacc gcgtcggcgc ccagcatccg
     2461 ggcgatctcg atctggcgct tggcgatcag cggccgcgcg atggaggtgc cgagcaggta
     2521 ctggccctca tagacggtgt tggcgcggaa catcgggaag acgaagtcac ggacgaactc
     2581 ctcgcggacg tcctcgatga agatgttctc gggcttcacc ccggcggcca gcgccttggc
     2641 gcgcgccggc tcgatctcct cgccctggcc gaggtcggcg gtgaaggtga tcacctccgc
     2701 gccatattcg gtctgcagcc atttcaggat gatcgacgtg tcgaggccgc cggaataggc
     2761 gagcacgact ttcttgatgg gcttggcagc catagggagc ggcgtcctga cgagagaagg
     2821 aagttaaggg tcgcgcgcct ttaagggcga acgcggctca cattcaaggc ctaagcgccc
     2881 tcacggccta agtgatcggg cgagccatcg caggtgcagg agcgccagca aggcggcgag
     2941 cgtcgcccgc accccgaaca cgatcacggc catgtcgccc gccgcctcgc gagcccgcag
     3001 gacgagccac aggctgaccg cgaaggtggc tgccggcagc agccatagcg cgatggcgcg
     3061 cggcgcctgg gcgccgagga agggaagctt gtcgcggccg gccgtctcgc cccacgcggc
     3121 gcgggaggcc gagaacatga tggtgagcgc gatgacccag agcgcgtcgc cggcgtagct
     3181 caggaccggc atggcctaaa tcgtcacctg ggttccgagc tccacgacgc ggcccggcgg
     3241 gatcttgtag aaatcggtgg ggttggcggc gttcttcatc aggaagatga agagtttgtc
     3301 ctgccagagc ggcatgcccg attgcgccga cgggaccacc gagcggcggc cgaggaagaa
     3361 gctggtcgcc atgatgtcga acttcaggcc gagcttgcgg caaagaccca gcgccttggg
     3421 caggttcggg ctttccatga agccgtaggt cacgatcacc ttcttgaaat cgtcgttcac
     3481 cggctcgatg cgcacgcgtt tgtcgtcgga gacccggggt gtctcggcgg tctcgatggt
     3541 gatgacgata ttcttctcat gtagcacctt gttgtgcttg aggttgtgca tcagggcgac
     3601 gggggccatc gaggcgtccg aggtcaggaa aatcgccgcg cccgggaccc ggtgcatcga
     3661 ccggctcgcc aggatttcgg agagctcaag cagggggatg ctgtcccggc gggtcttatc
     3721 ggtcagaatc tgggcgccgc gggtccaggt ccacatcatc agcacgattg ccgcgccgaa
     3781 cgacagcgga aaccagccgc catccagcac cttcaccaga ttggcgccca ggaagctgag
     3841 gtcgatcagg agaagcggga tcgcgaaggc gagcgcgccg gccaggctcc atttccagag
     3901 gcggcgcgcg acgatgaact ccaggaggac cgtgatcacc atggtgccgg tcaccgcgat
     3961 gccataggcc gacgccatgt tggcggaggt ctggaacagg accagcagga ccaggacgcc
     4021 gatcatcagc atccggttga ccgacggaac gtagatttgt cccgcgacgg tctcgctggt
     4081 gcggcggata tcgattcgcg gcagcagacc caactgcacc gcctgctgtg tcaccgaata
     4141 ggcgccggtg atcacggcct ggctcgcgat gaccgtcgcc ccgatcgata gaaccagaac
     4201 gggccagtag gcgaagtgcg gaatgatcga aaagaagggg tctttcgccg ccgccgggtc
     4261 ggtcaggacg agcgcgccct ggccgaaata ctgcagggcc aggcagggaa gggccatggt
     4321 cagccaagcc aggcggatcg gctgcttccc gaagtgcccc atgtcggcgt agagcgcctc
     4381 ggcgccggtc acggccagga acacgcttcc gaggatgatg aacccgagca ggccgttgct
     4441 gaacagcaga tggaccccga agtaggggtt cagggccttc aggatgacgg gcgcctgcac
     4501 gatgtgcacc aggccgagca ccgccagcac gagaaaccac accaccatga tcggtccaaa
     4561 gaagcggcct acgctggcgg tccctcgcga ctggaccatg aagaggccga tcaggatcgc
     4621 gccggccagc gggagcacga tgggcctgaa gaaatgcccg acggagggcg cgtcccgcag
     4681 caactcgacc gccgacagga ccgacaccgc gggcgtgatc agaccatcgc cgtagaacag
     4741 ggccgcgccg caaatcccca gcagaaacac gaaggtcgag cgtcggccca acgcgcgctg
     4801 ggccagggcc atcagcgcca gggtgccccc ctcgcccttg ttgtctgccc gcatcacgaa
     4861 gacgacgtat ttgatcgtca ccacgatgat gagcgcccag aaaatgagcg aaacgatccc
     4921 cagcacgccg gcctggctca cgccgccacg gatgtgactg agcgccgcgc ccatcgcata
     4981 gagcgggctc gtgccgatat cgccgaacac gacacccagg gagcctaggg cgagcgccca
     5041 gagtccttgc ttgtgggagt gatgcgactc ctcggacgcc tccggggcgt cgccggccgt
     5101 atcagccatc caatatctcc gggaacggag acggcgttcc cttggtcggc ccgatgccgt
     5161 cttgcggcgg gcgcgataca cccattccag accccgttca atggcgcgcc gccccagagg
     5221 cgactcgggg cgcgactcga gggttctgct ccggtcacgc ttttccttga atgaccgcgc
     5281 gccagcccta ggttcccgcc tacggagtcg gagacggaca tggatcgcag actggcgttg
     5341 gtgaccggcg cctcggctgg catcggggcg gccttcgccc gcatcctggc gagccatggc
     5401 tatgacgtgg cgttgaccgc ccggcgcgcc gaccggctgg acaagctcgc cgaggagatc
     5461 tccctgcgct acggggtcga ggcgctgaca gtcaccgccg acctctccga gcccgaggcg
     5521 ccgggccaga ttctcgacgt cctgaccgcc cacggccgca ccgtcgacgc cctggtcaac
     5581 aacgccggct acggcctgcc cggcgcctat gccgacaccc gctgggagga ccagcgcgcg
     5641 gtgatccagg tgatggtgac cgccccggcc gaactggccc accgggtgct gcccggcatg
     5701 atccaccgca ggttcgggcg catcgtcaat gtcgcgtcgc tcgcgggcct ggtcccgggc
     5761 gcggcaggcc acacgctcta tggggcggtg aaggccttcg gcgtgcggtt ctcccagagc
     5821 ctgcacctgg agaccgaggc gcaaggggtg catgtgagcg cgctctgccc cggcttcacc
     5881 tattcggaat tccacgacgt ggcgggcacg cgcgcccaga tcacccagtc gaccccaccg
     5941 tggctgtggc tgggcgccga cgaggtggcc gccgctggct acgaggccgt ggaagccaac
     6001 cgcccgatct gcgtccccgg cgcgcccaac aaggccattg ccgcggtggt caagcttatc
     6061 cccgacgact gggcgctggc gctgatggcc tcgcagagct cgcggttccg gaagctctag
     6121 ctatttagcg tacggccacg ccgcctcggg gcggatgagg ccgtgggtgg aatcggcgac
     6181 gcccgccagc aggaactgca cggccatggc gcagaggatc aggcccagca cgcgcacgat
     6241 gatcgacagc ccgatcttgc ccagcaacct gccgatcagc ggcgtggcca ggaatgaggc
     6301 caaggtggcc accgacaccg ccgcgatggc gccgatcccc agggccgcac cgggcaggcc
     6361 gtattccttc gcctggctcg cgtagatgat caccgtcgag atcgcgccgg gcccgatcag
     6421 cagcggcatg gcgaagggca cgatcatctg ctcgacgcgg cggcgaacgt aggtgcgctt
     6481 gtcgtcggcg gtcgcctcgg cggcgtcggc gaagcctgcg gtgaagtcgt cgccgatcat
     6541 cttcagaccc agcacgaaca ggatcacccc gccggcgatg cggaaggccg gcagcgagat
     6601 gccgaagaag gtcagcaggc tgaggcccga gaaatagaaa aaggtcagga aacccatgac
     6661 gaacagcgag atcacgaagg cgatctgcgc acgttcgcgg ccgctggcgc ctaccgtcga
     6721 ggcggcgaat accggcacgt tcccgatcgg gtcgagcagg gcgaacagcg ccacgaagaa
     6781 gttgaccgcg aagtcccaat ggatcatcca ccggtcttag cccaaatcgc tgcgccagcc
     6841 gaacccccgg cttgcgcggt ctcctgcccg gagccttcgt catggccgaa gccgcgccaa
     6901 ttcttgcaga aagagggcag cccaccatca aggcggataa acgcctgatc gtgccgctgg
     6961 acttccctac tgccgacgag gcgcgcgcgg tggtcgccgg cctcggcgat gcggttagtt
     7021 tctacaaggt ggggcttgag ctcttcgcca ccgacggcat ggccctggcg cgcgagctca
     7081 aggcccaggg caagcaggtg ttcctcgact ggaagctgca cgacatcccc accacggtgc
     7141 agcgggcggc cgcagcgatc tccaccgcgg gctgtgactt catcaccgtc catgccgagc
     7201 cgcaggtgat ggccgccgcc gtacgcggac gcggatcgtc ttcgctgaag atcctgggcg
     7261 tcaccgtgct caccagcctc accgacgagg acctgaaaga gatgggctat gcggaaaaag
     7321 cccgcgcgct ggtcgagcgg cgcatccacc aggccatcgc cgccggctgc gacggggtgg
     7381 tggcgagccc gcacgaggcg gcgcttgccc gcgcgctcgg cggccgtgac ttcctggtgg
     7441 tgacgccggg ggttcggccg gactggtcgg ccaagaacga tcaggcccgc gcggcgaccc
     7501 cgctcgacgc gctcaaggcc ggcgcctcgc acatcgtctg cggccgtccg atcaccgcgg
     7561 ccaacgaccc gcgcgcggcg gcgctacgtg tcgcggcgga gatgtcccaa gctggatgag
     7621 gcgccgggct agaagtcgac ggcgatgccc ttgcgttccc agtcgccgaa gcgggtgggt
     7681 tccagaccct tgggaccgcc ctgctc
//
LOCUS       DATAJL010000994         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_128458,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000994 DATAJL010000000
VERSION     DATAJL010000994.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128458"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..993
                     /locus_tag="VHN39_18765"
     CDS             <1..993
                     /locus_tag="VHN39_18765"
                     /inference="COORDINATES: protein motif:HMM:NF014066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraB/GumN family protein"
                     /protein_id="HEX2818442.1"
                     /translation="LRMSLRRTPGILGLALLAAAVVLPAPALAQNPLTPSRPDPNDPD
                     AVLVEELVVTGRLPGPAWWTVSNATTTVYVLGSPSLAPKHMAWDRAIFDRRLTGANVV
                     ILPVQDIRVTFTGAFGAAFNYMRLRSGGPYEETLDPATRARFIAARTGMGQPAKHYPT
                     RNPIAAGLILDADYHQKFGLTTADPTKLIKLLAQRAKVPVAQRSYNIGPLMGAMLRTP
                     ESNGRGCFNEVLQLVESGPGGTQAAARAWAVGDVRGALANERTYERCIALVPGAVTFD
                     SQMKSDLVTDLQNALKKPGHAVAVVPLRTLLAQGGVMDQLRSKGFKVTTPGEEE"
     gene            complement(998..1402)
                     /locus_tag="VHN39_18770"
     CDS             complement(998..1402)
                     /locus_tag="VHN39_18770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818443.1"
                     /translation="MKHHHLGGLAAGLCLAVLSLAGAAQAQHPAAPPTTAHMQGNGEQ
                     AWINDPHMHAFYETTKAAFAGGPAKVNVDAYEQKSFAIFRDFAPAMHMTPEGMVDHLK
                     LIPRQVVQIVKEDPHVLDNYRNFVDATFGPQG"
BASE COUNT          240 a          499 c          529 g          250 t
ORIGIN      
        1 ctgcggatga gcttgcgacg cacccccggg atattgggtc tggccctgtt ggcggcggcc
       61 gtggttctgc cggccccggc gctggcgcag aatcccctga cgccatcccg gcccgacccc
      121 aacgacccgg acgcggtgct ggtcgaggag cttgtggtca cgggccgcct gccgggcccg
      181 gcctggtgga ccgtctccaa cgcaacgacc accgtctacg tcctgggctc gccgtcgctg
      241 gcgcccaagc atatggcctg ggaccgcgcg atcttcgatc ggcggcttac cggggccaac
      301 gtggtgatcc tgccggtgca ggacatccgg gtgaccttca ccggcgcctt tggcgcggcg
      361 ttcaactaca tgcggctgag gtctggcggg ccgtacgagg agacgctgga tccggcgacc
      421 cgcgcgcggt ttatcgcggc ccgcacgggg atggggcagc cggccaagca ttacccgacc
      481 cgcaacccga tcgccgccgg tctcatcctg gacgccgact atcaccagaa gttcggcctc
      541 acgacggccg accccaccaa gctgatcaag ctgctggccc aacgcgcgaa ggtcccggtg
      601 gctcagcgga gctacaacat cggcccgctg atgggggcca tgctgcgcac gccggagagc
      661 aacggccgcg gctgcttcaa cgaggtgctg caactcgtgg aaagcgggcc cggcgggacc
      721 caggccgcgg cgcgggcctg ggcggtcggc gacgtccgcg gcgcgctcgc caacgagcgg
      781 acctatgaac gttgcatcgc gctggtcccg ggcgccgtga ccttcgactc ccagatgaaa
      841 tcggaccttg tcaccgacct ccagaacgcc ctgaagaaac ccggccacgc cgtcgccgtc
      901 gtgccccttc gcaccctgtt ggcccagggt ggcgtgatgg atcagctgcg gtccaagggc
      961 ttcaaggtga ccacgccggg cgaggaagag taggcgccta gccttgcggc ccgaaggtcg
     1021 cgtcgacgaa attccggtag ttgtcgagga cgtggggatc ttccttcacg atctggacga
     1081 cttggcgcgg gatcagcttt aggtggtcga ccatcccttc gggcgtcatg tgcatcgcag
     1141 gcgcgaagtc gcggaagatg gcgaaggact tctgctcgta ggcgtccacg ttgaccttgg
     1201 ccgggccacc ggcgaaggcg gccttggtgg tctcgtagaa ggcgtgcatg tgcgggtcgt
     1261 tgatccaagc ctgctcgcca ttgccctgca tgtgggcggt ggtcggcggg gcggcggggt
     1321 gctgcgcctg ggcggcgccc gccagcgaca ggacggcgag gcagaggccg gcggccaagc
     1381 cgccgagatg atgatgtttc acgaaaacgc tccttcagga tttcggcatg ccgtctccgg
     1441 tcccggaggc ggttggcgcc gcgatccggg gctgatatct catgccaaga atgcctgaca
     1501 tgatgtaaaa gatatcat
//
LOCUS       DATAJL010000995         1515 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_128509,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000995 DATAJL010000000
VERSION     DATAJL010000995.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128509"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..378)
                     /locus_tag="VHN39_18775"
     CDS             complement(<1..378)
                     /locus_tag="VHN39_18775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C13"
                     /protein_id="HEX2818444.1"
                     /translation="MRLAWLLIACLWLAATPAAAGPAFSDWSAVVVAGDWHAHSGGPS
                     EAFDNARRDVTQAFELAGFAPANLRQFSVRPERYPGVALTKSEPQAIYDALADLTGKA
                     TGGCLIYFSSHGAPQGVVVDQRFL"
     gene            complement(394..864)
                     /locus_tag="VHN39_18780"
     CDS             complement(394..864)
                     /locus_tag="VHN39_18780"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEX2818445.1"
                     /translation="MEDVASAEPLVLTDEAILERFRRTKNQPTGSQTLGFHMLSVNQA
                     EKTVEIEFEARAELLLNPMKQIQGGYLCAMLDECMSVACMVASGMTSVAPTLEMKTSF
                     FRPGLPGKLRGVGRVAKWGRQVAFTEGEIYGADGKLLAKATGTAIPTPFQNYKT"
     gene            complement(876..1367)
                     /locus_tag="VHN39_18785"
     CDS             complement(876..1367)
                     /locus_tag="VHN39_18785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SspB family protein"
                     /protein_id="HEX2818446.1"
                     /translation="MAQDPPAQDLMRYEAMAQDALRGVVKTALKRAAAPEGLPGAHHF
                     YITFKTEAPGVSGPADLLGKYPDEMTIVLQHQYWDLAPGETFFSVTLQFGGQPKRLSV
                     PYAAVTRFYDPSVQFLLQFEPPPAAEGQANESEAKTAATDPETPPPDGEAKIVSLDQF
                     RKK"
BASE COUNT          238 a          490 c          543 g          244 t
ORIGIN      
        1 caggaaccgc tgatcgacca ccaccccctg cggcgccccg tggctgctga aatagatcag
       61 gcagccgccg gtggccttgc cggtgaggtc ggccagcgcg tcataaatcg cctgcggttc
      121 ggacttggtg agcgccacgc ctgggtaacg ctccggccgc acagagaact ggcgcaggtt
      181 ggctggcgcg aagcccgcca gctcgaaggc ttgcgtcacg tcgcgccggg cgttgtcgaa
      241 ggcttcggac gggccgccgg agtgggcgtg ccagtcgccg gccaccacca ccgcgctcca
      301 gtcgctgaac gccgggcccg ccgcggccgg cgtcgccgcc agccagaggc aggcgatcag
      361 cagccaggcg aggcgcacaa gccgctccac ggctcaggtc ttgtagttct ggaacggcgt
      421 ggggatggcc gtgccggtgg ccttggccaa cagcttgccg tcggcgccgt agatctcacc
      481 ctcggtgaac gccacctggc ggccccactt ggcgacgcgg cccacgccgc gcagcttccc
      541 gggcaggccg ggccgaaaga agctggtctt catctccagg gtcggggcca ccgacgtcat
      601 gccggaggcc accatgcagg cgacgctcat gcattcgtcg agcatggcgc agagatagcc
      661 gccctggatc tgcttcatcg ggttgagcag gagctcggcc ctggcctcga actcgatctc
      721 gacggtcttt tcggcctggt tgaccgagag catgtgaaag ccgagcgtct gggagccggt
      781 gggctggttc ttggtccgcc ggaaacgctc caggatcgcc tcgtcagtca gcacaagcgg
      841 ctcggcggac gcgacgtctt ccatggggct ttggctcact tcttccggaa ctggtcgagg
      901 gagacgatct tggcttcgcc gtcgggcggc ggggtctccg gatcggtggc cgcggtcttg
      961 gcttcggact cgttggcctg gccctcggcg gcgggcggcg gctcgaactg cagcaggaac
     1021 tggacgctcg ggtcgtagaa gcgggtgacc gcggcgtagg gcacggaaag ccgcttgggc
     1081 tggccgccga actgcagggt caccgagaag aaggtctcgc ccggcgccag gtcccagtac
     1141 tggtgctgca ggacgatggt catctcgtcg gggtatttgc cgagcaggtc ggcggggccg
     1201 gagacgcccg gcgcctcggt cttgaaggtg atgtagaaat ggtgcgcgcc cggcaggccc
     1261 tcgggcgcag cggcccgctt cagcgcagtt ttcacgacgc cccgaagcgc atcctgggcc
     1321 atggcctcat agcgcatcaa atcctgggcg ggcgggtcct gagccatcgg gtctccaacg
     1381 aacgagcgcg aacctaacgc ctaggtggca aggcgcaaag ccgcttcata cggagcgatt
     1441 gcataaggcg cgcgcttgcc gtcaggcagg cgcccacagg cttgagaaag gtgggaggct
     1501 tctgttggca ggcac
//
LOCUS       DATAJL010000996         5565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113082,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000996 DATAJL010000000
VERSION     DATAJL010000996.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5565
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113082"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..396
                     /locus_tag="VHN39_18790"
     CDS             <1..396
                     /locus_tag="VHN39_18790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEX2818447.1"
                     /translation="YHNHNIEFAPKGETNGLEILLKYTDPALVPFEMDVGWVVAAGHD
                     PFALLKAHPGRFRQMHVKDVKASTKANFAFQQDPADIGSGIIDWKRLLPAAYAHGVRD
                     FFVEQEAPFDKPRLESVRIDFDYLNALVA"
     gene            407..958
                     /locus_tag="VHN39_18795"
     CDS             407..958
                     /locus_tag="VHN39_18795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818448.1"
                     /translation="MKRIWCVAVACVAVCGCALGTPPIANPNGLPADALTLEYVLERG
                     CLPYMLGHMTEQQAMRGVGLNHIQPIVPLLVPGGNAPFWARGNALQVTARVGRDICHV
                     HIKGRNFAAYGEATKAALRRTFGAEAASDGGSGYRAWVPGQITGCRQGVRYTYYQEPK
                     SNGFSVENYRVADCAHDPLRMPG"
     regulatory      1117..1340
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            1527..3503
                     /locus_tag="VHN39_18800"
     CDS             1527..3503
                     /locus_tag="VHN39_18800"
                     /inference="COORDINATES: protein motif:HMM:NF012801.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEX2818449.1"
                     /translation="MPRHLIGASLLALIAASPLSAFAEEAKPATVPTTVDDLVVTGTR
                     DIEGVPADKIGGSLTVITAQDFEDRQVRVVSDVLRDVPGVAVSRTGAVGSFTQVRIRG
                     TEGNHVLTLIDGIKADDPFIGEFDYATLLADDVARVEVLRGQQSAIYGSDAIGGVINY
                     ITPTGQQSPGVRVRAEGGSMGTYGGAARVAGYANGLDYVVSGGYQKTDGFVVAPGGSR
                     DIGSELGSLAAKVAYEVTPHLKLRAVVRYTDTNADSNGQDFNPPGFATDSPGSSTKAV
                     SKYGFAAADYDMLDGRWTHSVSVQGVDSTRDNEANFINTGGDKGTRLKASYATTFRID
                     AGELTHRFTAAYDYERETYQNTNPPGAFAADTTKRAVRNDGFVGQYDLTVADVAGVGG
                     AIRYDENDFFQNATTYRVQGFWKVADGVRLRAAAGSGIKSPSQTELFGFNATAFPFVG
                     NPNLKPERSEGWEAGADIAAVEGRVRVGATWFDSTLHDEIFSIFDAPLALCTRPGFPA
                     PFSCSTTGNETTLSTQKGVELFANARLSDAFTLDAAYTHLTARQDHVQEIRRPPNLGS
                     VNLTWRAPGDRGSITATVRYNGDMTDTDFSAFPARTVALKAYTLVNLAGALKLNETLE
                     LFGRIENLTNDRYEEVYGFNTPGRAAYAGVRARF"
     gene            3602..4363
                     /locus_tag="VHN39_18805"
     CDS             3602..4363
                     /locus_tag="VHN39_18805"
                     /inference="COORDINATES: protein motif:HMM:NF013648.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX2818450.1"
                     /translation="MSLNVCTDLLLLQIAPRARIASVTFMAPEGAAVLFPGRAAGIAL
                     NHGRAEDVINAKPDLILDSGLGAPLTRTMAKRVGARVVEVKDANSFSDIRDIVRQVGD
                     AVGEPERAATLVREMDATLAELAAHPPRRQLRVVAWSGGSAVPGKGSLTDAIITAAGA
                     TNIAAQPGHAESSFGVEELLVAKPDALLYGGAALGQPSLISDEGQHRAVRQLYAGRRI
                     RYNDITHTCGVPQSADSARDLRRALDTLPQARAGR"
     gene            4360..5370
                     /locus_tag="VHN39_18810"
     CDS             4360..5370
                     /locus_tag="VHN39_18810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007661677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEX2818451.1"
                     /translation="MKTTAPRFVAPPYVLPGAALLLLVAAAVGSLFLGRVNISPAELW
                     AGIVSPHASLAGLVVTELRLPRAVLAILVGASLGLSGAVLQGLLRNPLAEPGLLGVSN
                     GAALGAVFSIYFGLEHHFGLATPLLGMAGAIGAGALTFVFGRGSTLTLILAGAAVCSL
                     MSAFLALALNFAPSPYAAYEMSVWMLGSLAERSWDHVALAAPFIFAGLAILATMGRAV
                     DALTLGEIQARSLGIHLDRTRMLALLGVGLAVGAATSVTGAVGFIGLVAPHLVRPFVG
                     HQPSRTLLPSALLGAVLLLLADIGTRVIHTNTELRLGAITSLVGAPFFFWLVVRLRKL
                     AP"
     gene            5367..>5565
                     /locus_tag="VHN39_18815"
     CDS             5367..>5565
                     /locus_tag="VHN39_18815"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2818452.1"
                     /translation="MSRIGAQHIAVRRGGRSILDDVSFDLEDGGFVAVVGANGAGKST
                     LLSVLAGLLKTDAGEVTLDGAP"
BASE COUNT          841 a         1885 c         1947 g          892 t
ORIGIN      
        1 taccacaacc acaacatcga gttcgcgccc aagggcgaga ccaacggcct ggagatcctg
       61 ctcaaatata ccgacccggc gctggtcccg ttcgagatgg atgtgggctg ggtggtggcg
      121 gctggccacg acccgttcgc gctgctgaag gcgcaccccg ggcggttccg ccagatgcac
      181 gtcaaggacg tcaaggcctc gaccaaggcc aacttcgctt tccagcagga cccggccgac
      241 atcggctcgg gcatcatcga ctggaagcgg ctcttgccgg ccgcctatgc gcacggcgtc
      301 cgcgacttct tcgtcgagca ggaggcgccg ttcgacaagc cgcgcctcga gagcgtgcgg
      361 atcgacttcg actatctgaa cgccctggtg gcttaggcgc gcgcgcatga agcggatttg
      421 gtgcgtggcc gttgcctgcg tcgcggtctg cggatgtgcg ctcggcacgc caccaatcgc
      481 caacccaaat ggactccccg ctgatgcgct gacgttggaa tatgtgctgg agcgggggtg
      541 cctgccctac atgctgggcc acatgaccga gcaacaggcg atgcgtggtg ttgggctcaa
      601 tcacatccag ccgattgtcc ccctcctggt ccccggcggc aacgcgccct tctgggcccg
      661 cggcaatgct ttgcaggtca ccgcccgggt gggtcgagat atctgccacg ttcatatcaa
      721 aggccgcaac ttcgccgcct acggtgaggc cacgaaggct gcgctccgcc ggacgttcgg
      781 ggcagaagcg gcctcggacg gagggtccgg ctacagggcc tgggttcccg gccaaatcac
      841 cggctgtcgt cagggcgttc gatacaccta ctaccaagaa ccaaagtcga acggcttctc
      901 cgtggaaaat taccgcgtgg ccgattgcgc tcatgatccc cttcggatgc ccggctgatc
      961 tgatcgcgga cgccccatcg ccttccttca ttgaggagga agggtgttct tgaaagaacc
     1021 cgccaagtct tggcgtggac aagcgctgag aagcgggtca aaacgcgcgc gtcacggtca
     1081 agtttgggcc gggatcgtcc gcggcccatc cgcgggcggg tacccatgcg caccgatgcc
     1141 ttcgggctta atcgggaacg cagtaggggg cgtttcttcc ccgatctgcg gctgtccctg
     1201 caactgtaag cggcgagcgc atacgcgatt ggggtgaggc ctgaagcctc gttccagcca
     1261 ctgggcgaaa gcccgggaag gtccgcgtat gtggctatga cccgcgagcc aggaaaccgg
     1321 tcggtgcgtg tcgctcgagc tttcggatca gagtgaatcc ggggcgcgga actccgtctg
     1381 agcgacgagc agaagcggtg gagagccgtt tcgaccggtc cggccgggcg cgtttccgcg
     1441 tcagcgcctg ccggtccgtc ggcctggggc gcgcccaagg aggctctccg cttgtcgttc
     1501 aggacgcaag caacggaggg gctctcatgc ccagacacct tatcggcgcc agcctgttgg
     1561 cgctcatcgc ggccagtccg ctttccgcct tcgctgagga ggccaaaccc gccacggtcc
     1621 ccacaaccgt tgacgacctg gtggtcacgg gcacccggga catcgaaggg gtcccggccg
     1681 acaagatcgg cgggtcgctc accgtcatca ccgcccagga cttcgaggac cggcaggtcc
     1741 gcgtggtctc cgacgtgctg cgcgatgtgc ccggcgtcgc ggtcagccgc accggcgcgg
     1801 tgggcagctt cacccaggtc cgcatccgcg ggaccgaggg caatcacgtg ctgaccctga
     1861 tcgacgggat caaggccgac gacccgttca tcggcgagtt cgactacgcg accctgctgg
     1921 ccgacgacgt ggcgcgcgtg gaggtcctgc ggggccagca gagcgcgatc tatggctccg
     1981 acgctatcgg cggggtgatc aactacatca cgcccacggg ccagcagtcg ccgggcgtgc
     2041 gcgtccgcgc ggaaggcggc tcgatgggga cctatggtgg cgcggccagg gtggccggct
     2101 atgccaacgg cctcgattac gtggtgagcg gcggctacca gaagacggac ggctttgtcg
     2161 tcgcccccgg cggcagccgc gatatcggct cggagctggg ctcgctggcg gccaaggtcg
     2221 cctatgaggt gacgccgcac ctcaagctgc gcgcggtggt gcgctacacc gacaccaacg
     2281 cggactccaa cgggcaggac ttcaacccac caggctttgc gaccgacagc cccggcagct
     2341 ccaccaaggc ggtcagcaag tacgggttcg ccgccgccga ctacgacatg ctggacgggc
     2401 gttggaccca cagcgtctcg gtgcaggggg tcgattccac ccgcgacaac gaggcgaatt
     2461 tcatcaacac gggtggcgac aaggggaccc ggctcaaggc ctcctacgcc accaccttcc
     2521 gcatcgacgc cggcgagctg acgcacaggt tcacggcggc ctacgactac gagcgggaga
     2581 cctatcagaa caccaatccg ccgggcgcct tcgcggccga caccaccaag cgggcggtgc
     2641 gcaacgatgg cttcgtgggc cagtacgacc tgacggtggc cgatgtggcc ggggtcggcg
     2701 gcgccatccg ctacgacgag aacgatttct tccagaacgc cacgacctat cgcgtgcagg
     2761 gcttctggaa ggtggccgac ggggtccggc tgcgggccgc ggcggggtcg gggatcaaga
     2821 gcccgagcca gaccgaactc ttcggcttca acgccaccgc ctttcccttc gtcggcaatc
     2881 ccaacctgaa acccgagcgg tcggagggct gggaagccgg cgccgatatc gcggcggtcg
     2941 agggcagggt gcgtgtggga gcgacctggt tcgactccac cctgcacgac gagatcttca
     3001 gcatcttcga cgcgccgctg gcgctctgca cccggccggg gttcccggcg ccgttcagtt
     3061 gcagcaccac gggcaacgag acgacgttgt cgacgcagaa gggcgtggag ctgttcgcca
     3121 acgcccggct ttcggacgcc ttcaccctgg acgcggccta cacccacctg accgcgcggc
     3181 aggaccacgt gcaggagatc cgccggccgc cgaacctggg cagcgtcaac ctgacctggc
     3241 gcgcgccggg cgatcggggc agcatcaccg ccaccgtccg ctacaatggc gacatgaccg
     3301 acaccgactt ctcggcgttc ccggcgcgga ccgtggcctt gaaggcctac accctggtca
     3361 atctggccgg ggcgttgaag ctcaacgaga cgctggagct cttcgggcgg atcgagaacc
     3421 tgacgaacga tcgctacgag gaggtctacg gcttcaacac acctgggcgg gccgcctacg
     3481 ccggcgtgcg cgcgcggttc tgaagatggg accggcctta cgctcattcg cgataggcct
     3541 agccgccgcg gcgcagctgg gatctccagc cgccgcggcg gcgcccaagc ctcagcggat
     3601 catgtcgctg aacgtctgca ccgatctcct gctgctgcag atcgcgccca gggccaggat
     3661 cgcgtctgta accttcatgg cgccggaggg cgcggcggtg ctgtttccgg ggcgtgcggc
     3721 ggggatcgcg ctcaaccacg gtcgggccga ggacgtgatc aacgccaagc ccgacctgat
     3781 cctcgacagc ggcctgggcg cgccgctcac ccgcaccatg gccaaacggg tcggggcccg
     3841 cgtggtcgag gtgaaggacg ccaacagctt ctccgacatc cgcgacatcg tccgccaggt
     3901 gggcgacgcc gtgggcgagc cggagcgcgc ggcgaccctg gtccgggaga tggacgccac
     3961 cctggcggag ctcgcggctc atccgccgcg gcgccagttg cgggtcgtcg cctggagcgg
     4021 cggctcggcg gtccccggca agggcagcct gaccgatgcc atcatcaccg cggccggggc
     4081 gaccaatatc gccgcccagc cggggcacgc ggaatcgagc ttcggggtgg aggagctgct
     4141 ggtggcgaag ccggacgcgc tgctctacgg cggcgcggcg ctggggcaac cctcgctgat
     4201 cagcgacgag ggccagcacc gggcggtgcg ccagctctat gctggccgcc gcatccgcta
     4261 caacgacatc acccacacct gtggcgtgcc gcagtctgcg gactccgccc gcgacctgcg
     4321 ccgcgccctc gacaccctgc cgcaggcgag ggcgggccga tgaagacgac cgcgccgcgc
     4381 ttcgtcgcgc ccccctacgt cttgccgggg gcggccctcc tgttgctggt cgccgcggcc
     4441 gtgggctcgc tgttcctggg ccgcgtcaat atcagcccgg cggaactctg ggccggcatc
     4501 gtctcgccgc acgctagcct ggcgggcctg gtggtgaccg agcttcgtct gccgcgcgcg
     4561 gtgctggcga tcctggtggg ggcgtcactc gggctttccg gcgcggtgct gcagggcctg
     4621 ttgcgcaatc ccctggccga gcccgggctg ctgggcgtct cgaacggggc ggcgctgggg
     4681 gcggtgttct cgatctactt cggcctggag caccatttcg gcctggcgac gccgctcctg
     4741 ggcatggccg gcgcgatcgg ggccggggcg ctcaccttcg tgttcgggcg gggctcgacg
     4801 ctgaccttga tcctggcggg tgcggcggtc tgcagcctga tgagcgcctt cctggcgctg
     4861 gcgctgaact tcgcgcccag cccctatgcg gcctatgaga tgagcgtctg gatgctgggc
     4921 tcgctggccg agcgcagctg ggaccatgtg gcgctggccg cgccgttcat cttcgcgggc
     4981 ctggcgatcc tggccaccat gggccgggcg gtggacgcgc tcacgctggg tgagatccag
     5041 gcccgcagcc tgggcatcca cctggatcgg acccgcatgc tggctctgct gggcgtcggg
     5101 ctggcggtgg gggcggcgac ctcggtgacc ggggccgtgg gctttatcgg cctggtggcg
     5161 ccgcacctgg tgcggccgtt cgtgggccat cagccgagcc ggacgctgct gccttcggcg
     5221 ctgctgggcg cggtgctgct gctgctggcc gacatcggga cgcgggtgat ccacaccaac
     5281 accgaactgc ggctcggggc gatcaccagc ctggtaggcg cgccgttctt cttctggctg
     5341 gtggtgcgcc tgcggaagct cgccccatga gccggatcgg cgcccagcac atcgccgttc
     5401 ggcgcggcgg ccgctcgatc ctcgatgacg tctccttcga tctggaggat ggcggctttg
     5461 tcgcggtggt gggggcgaac ggggcgggca agtcgactct gttgtccgtg ctggctgggc
     5521 tgctgaagac cgatgcgggc gaggtcacgc ttgatggcgc gccgc
//
LOCUS       DATAJL010000997         2534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113092,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000997 DATAJL010000000
VERSION     DATAJL010000997.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113092"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VHN39_18820"
     CDS             <1..328
                     /locus_tag="VHN39_18820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818453.1"
                     /translation="FNGKTDIAPPVPELTEQGFPLVGGRLDYIDGHVAPAIVYSHRLH
                     TVNLFVWQAGGRLLNETRAVRRDGYSLVEWTQGGLRFAAVSDIDPVDLQQFRAAYIAH
                     SPDTPH"
     gene            381..845
                     /locus_tag="VHN39_18825"
     CDS             381..845
                     /locus_tag="VHN39_18825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818454.1"
                     /translation="MANSKRARANPALRRAFIRQCHVYISVFVAPSLLFFAFTGALQT
                     FRIPDDRATPQLIQKLARVHKDDVFALKPMRPKRPDAARRAPVKKAPQAEPREALSTT
                     ALKWFFTAISIGVGLTTLFGLWMALTHSRRKAIVWLVLAAGAAAPVLILNLP"
     gene            complement(842..1633)
                     /locus_tag="VHN39_18830"
     CDS             complement(842..1633)
                     /locus_tag="VHN39_18830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX2818455.1"
                     /translation="MGYEAALRDYQKFEFTDGPYTRPVWRRGTGPAVIIIHEIPGLHP
                     LVVRFADHVAAAGMTVFCPSLFGTPGKPISRTYAMASMFNAICIRREFSVWSTEKSSP
                     IVDWLRALARVVHAECGGKGVGAVGMCFTGGFALAMMTEPSVVAPVLSQPSMPAVAGS
                     KKRAAGFDASPAEIACAKARFEAEDLTMIGLRYKSDVLVPDARFESYRREFGERFEAI
                     ELEDKDAAPAQIPPHSVLTLHLLPDGPSKAAEDRVIQFFKDRTGA"
     gene            complement(1669..2166)
                     /locus_tag="VHN39_18835"
     CDS             complement(1669..2166)
                     /locus_tag="VHN39_18835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818456.1"
                     /translation="MRKLLVALLTLALSACATAQRLGAANDVRALLVSIRDNDHAAFD
                     AHVDHEALKADLQSKIEQQLSTNKKMKGLAALLGPSTLDLADQLLVQPKTFRMVAEQY
                     GYRADTQIPGPIAISQALKTLPDGRVCATKKKDGPCLLVFTREGGVWKLTGFEGDSSM
                     LRLKL"
     gene            complement(2237..>2534)
                     /locus_tag="VHN39_18840"
     CDS             complement(2237..>2534)
                     /locus_tag="VHN39_18840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818457.1"
                     /translation="TIEVVGMASHWGILLIAAAIFVLTSLKFPVLRQRAWITGPLFGI
                     CIYIVMHYVIVPLSMVHRVNNPAQLDQFIEEFAGHMFIIGLPIALWARAILGKD"
BASE COUNT          415 a          825 c          892 g          402 t
ORIGIN      
        1 gttcaacggc aagaccgaca tcgccccacc ggtgccggag ctcaccgagc agggcttccc
       61 gctggtcggc ggacggctcg actacatcga cggccatgta gcgccggcga tcgtctacag
      121 ccaccgactg cacacggtga acctcttcgt ctggcaggcg ggggggcgac tgctgaacga
      181 gacgcgcgct gtgcggcgcg acggctatag cctggtggag tggacgcaag ggggcctgcg
      241 attcgccgcg gtgtcggaca tcgatccggt cgatctgcag cagttcaggg ccgcctacat
      301 cgcccactcg ccggacaccc cgcactaggc taactgggcg cagcggccga gccgcgcgtg
      361 acctgcggct ggagagcgtc ttggcgaatt cgaagagggc gcgggccaac cccgcgctgc
      421 ggcgggcgtt catccggcaa tgccacgtct acatcagcgt cttcgtggcc ccgagcctcc
      481 tgttcttcgc cttcaccgga gccttgcaga ccttccggat tcctgacgac agggcgacgc
      541 cgcagctgat ccagaagctc gcccgggtgc acaaggacga cgtcttcgcg ctgaagccga
      601 tgcggccgaa acggccagac gcggcgaggc gcgcgccggt gaaaaaggcc ccgcaggccg
      661 agccgcgcga ggcgctttcg accacggcgc tgaagtggtt cttcacggcg atctcgatcg
      721 gcgtcgggct gaccacgctg ttcggcctgt ggatggcgct gacgcatagc cggcgcaagg
      781 cgatcgtctg gctggtgctg gccgctggcg ccgccgcgcc ggtgctgatc ctcaacctgc
      841 cttaggcgcc tgtccggtcc ttgaagaact gaatgacccg atcctcggcg gccttcgacg
      901 gaccgtcggg cagaaggtgc aaggtcagca ccgagtgggg cggaatctgc gcgggcgcgg
      961 cgtccttgtc ctcgagctcg atggcctcga agcgctcgcc gaactcgcgg cggtagctct
     1021 cgaaccgggc gtcggggacc aggacatcgc tcttgtagcg caggccgatc atggtcaggt
     1081 cctcggcttc gaaccgggcc ttggcgcagg cgatctcggc gggcgaggcg tcgaagccgg
     1141 cggcgcgctt cttcgacccg gcgacagccg gcatcgaggg ctgcgacaac accggagcca
     1201 caacgctggg ctcggtcatc atggccagcg caaagccgcc ggtgaagcac atgccgaccg
     1261 cccccacgcc cttgccgccg cactcggcgt ggacgacgcg ggcgagcgcg cgcagccagt
     1321 cgacgatggg gctcgatttc tccgtcgacc agacgctgaa ctcgcggcgg atacagatgg
     1381 cgttgaacat cgaggccatg gcgtaggtgc ggctgatcgg cttgccgggc gtgccgaaca
     1441 ggctcgggca aaagaccgtc atgccggccg ccgccacatg gtcggcgaag cgcaccacca
     1501 gcgggtgcag gccggggatc tcgtggatga tgatcaccgc ggggccggtc ccgcggcgcc
     1561 agaccgggcg cgtatagggc ccgtcggtga attcgaattt ctgataatcc ctgagcgccg
     1621 cttcgtagcc catgctcacc cctgtccgtt gaggtcgagc ttaggcaatc agagcttcag
     1681 gcgcagcatc gaactgtcgc cctcgaagcc ggtcagcttc cagacgcccc cttccctggt
     1741 gaagaccagc aggcaggggc cgtccttttt cttcgtcgcg cagacccggc cgtccggcag
     1801 ggtcttcagg gcctgtgaga tggcgatggg gccggggatc tgggtgtcgg cgcggtagcc
     1861 atactgctcg gccaccatgc ggaaggtctt gggctgcacc agcagctggt cggcgaggtc
     1921 cagggtcgag gggccgagca gggcggccag gcccttcatc tttttgttgg tgctgagctg
     1981 ctgctcgatc ttggactgca ggtcggcctt cagcgcctcg tggtccacgt gggcgtcgaa
     2041 ggcggcgtgg tcgttgtcgc ggatcgagac cagcagggcg cggacgtcat tggccgcgcc
     2101 cagcctctgc gcggtcgcgc aggcgctgag cgccagcgtc aacagcgcca cgagaagctt
     2161 gcgcatgggg cgtcctccta tcggccgcca gtctagcgcg aaaggcggcg acttcgcgac
     2221 aggaggcggg aggccatcag tccttgccga ggatcgcccg ggcccagagc gcgatcggca
     2281 ggccgatgat gaacatgtgg ccggcgaact cctcgatgaa ctggtcgagc tgggccgggt
     2341 tgttcacccg gtgaaccatc gacagcggca cgatgacgta gtgcatcacg atgtagatgc
     2401 agatgccgaa cagcgggccg gtgatccagg cccgctggcg caggaccggg aacttcagcg
     2461 aggtgagcac gaagatcgcc gcggcgatca agaggatgcc ccagtgcgag gccatgccga
     2521 cgacctcgat ggtc
//
LOCUS       DATAJL010000998         1738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_128688,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000998 DATAJL010000000
VERSION     DATAJL010000998.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1738
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128688"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..759
                     /locus_tag="VHN39_18845"
     CDS             <1..759
                     /locus_tag="VHN39_18845"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX2818458.1"
                     /translation="KLDGFAVGDLVTNRMGFREYFTSGAKGLTKLTPDPDLPLTVHMH
                     ALGGTGFTAYGGLLHIGQLKDGEQVFVSTAGGAVGSVAAQIAKLKGCYVVGSTGSDEK
                     AAWLRDTVGLDAVINYKTHPIRQALEEATPKGLDVYFDNVGGDHLEAALRRMNTLGRV
                     PVCGFISGYNSGHSNVSNLSNIIYARVMLRGFVAPDFMHLYPDFQRDMALWLKDGRVK
                     YQETIVDGIAAAPGALIGLMAGQNAGKMLVRLAS"
     gene            850..>1738
                     /locus_tag="VHN39_18850"
     CDS             850..>1738
                     /locus_tag="VHN39_18850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin family protein"
                     /protein_id="HEX2818459.1"
                     /translation="MPRTILGVLAVTFSLALAAPAPAASPPAAKASVVPPIVYKERTL
                     ANGLQVYTSLDRTTPNVTVQVWYGVGSKDDPQGRSGFAHLFEHMMFKATKDLPAESFD
                     RLTEDVGGLNNASTFDDFTNYYEVVPANHLERLIWAEGERMGSLVIDDANFKSERDVV
                     KEELRQRVLASPYGRLFSLYLPQATYSTHPYHRPGIGSIEELDAATIDDVRAFHEAYY
                     RPDNAALIVVGNFNETQLAAWIDKYLAGLKNPSQPIKRVTAVEPRRTHPGVYEGYGPN
                     VPLPAVAITWLGAKASDPDA"
BASE COUNT          299 a          612 c          553 g          274 t
ORIGIN      
        1 aagctggatg gcttcgccgt gggcgatctg gtgaccaacc gcatgggctt tcgcgagtat
       61 ttcacctccg gggccaaggg cctgacgaag ctgacgcccg acccggacct gccgctgacg
      121 gtccacatgc atgccctggg cggcaccggc ttcacggcct acggcggcct cctgcacatc
      181 ggccagctca aggacggcga gcaggtgttc gtctccaccg ccggcggagc ggtgggctcg
      241 gtcgcggccc agatcgccaa gctgaagggc tgctacgtcg tcggctccac cggctctgac
      301 gagaaggccg cctggctgcg cgacacggtc ggcctggacg cggtgatcaa ctacaagacc
      361 catcccatcc gacaggcgct ggaagaggcc acgcccaagg gcctcgatgt ctatttcgac
      421 aatgtcggcg gcgaccatct ggaggcggcg ctcaggcgca tgaacacgct gggccgcgtg
      481 ccggtgtgcg gcttcatctc cggctacaac tccggccact ccaacgtctc gaacctctcc
      541 aacatcatct atgcgcgggt gatgctgcgg ggcttcgtgg cgccggactt catgcatctc
      601 tacccggact tccagcgcga catggcgctc tggctgaagg atgggcgggt caagtaccag
      661 gagaccatcg tcgatggcat cgccgccgcg cccggggcgc tgatcgggct gatggcgggc
      721 cagaacgccg gcaagatgct ggtccgcctg gcgagctgac caacgcctcg aaacagatga
      781 ccaagccgta agcttcctcc gccgcacgcc ggtgctaagg atgtcggctg cgcatttccg
      841 gagccgccca tgccccgcac gatcctcggc gtcctcgccg tcaccttctc cctggcgctc
      901 gccgcgcccg ctccggcggc gagcccgccg gccgccaagg ccagcgtggt cccacctatc
      961 gtctacaagg agcggacgct ggccaacggg ctgcaggtct acacctcgct ggaccgcacc
     1021 acgcccaatg tgaccgtgca ggtctggtac ggcgtgggtt cgaaggacga tccgcagggg
     1081 cgaagcggct tcgcccacct cttcgaacat atgatgttca aggccaccaa ggacctgccg
     1141 gccgagagct tcgaccgcct gaccgaggac gtggggggcc tcaacaacgc gtccactttc
     1201 gacgacttca ccaactacta cgaggtggtg ccggccaacc atctggagcg gctgatctgg
     1261 gccgagggcg agcggatggg ttcgctggtc atcgacgacg ccaacttcaa atccgagcgc
     1321 gacgtggtga aggaggagct gcgccagcgc gtgctggcct cgccctatgg gcggctgttc
     1381 agcctctacc tgccgcaggc gacctattcg acccacccct atcatcggcc agggatcggc
     1441 tcgatcgagg agctggacgc cgccaccatc gacgacgtgc gcgccttcca cgaggcctac
     1501 taccgccccg acaacgccgc cctgatcgtg gtcggcaact tcaacgagac ccagctcgcg
     1561 gcctggatcg acaagtacct ggccggcctg aagaacccgt cccagccgat caagcgggtg
     1621 accgcggtcg agcccaggcg cacgcatccc ggcgtctatg agggctatgg ccccaacgtg
     1681 cccctgccgg cggtggcaat cacatggctg ggcgccaagg cgtctgaccc cgacgctc
//
LOCUS       DATAJL010000999         2410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113307,
            whole genome shotgun sequence.
ACCESSION   DATAJL010000999 DATAJL010000000
VERSION     DATAJL010000999.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113307"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            86..1906
                     /locus_tag="VHN39_18855"
     CDS             86..1906
                     /locus_tag="VHN39_18855"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartyl protease family protein"
                     /protein_id="HEX2818460.1"
                     /translation="MTPRVLASAAALSVLAFARAGPASAACQFQKIAEVPVTMEGLRP
                     TIMAKINGQDAKFLVDTGAFFGGVTADTAAKYGMKRSIAPFGMMVQGVGGVKRDVQAV
                     AAQSFTFAGVGFHDTDFLLLGRIGGGGVAGNIGENLMGPFDVEYDFANGLIRYFKATG
                     CAYDSNLAYWSAGLAVSRVSIIDPSSILLKVITNAKVDGHTIRVTFDSGSSLSVMSRP
                     AASRAGIQVNSEGVVNGGISYGIYGKGLDSFLAPFGSFKIGDEEIKNTRLRVADIDLP
                     ASDMLLGADFFLSHRILISNSQKKVYFTYNGGPVFRLDQQQPARAVAAAAPTSPAESA
                     EAATPGDGPKTAAEFARRASASAARRDFQPAIADYTRAIELEPDNARHYRDRALARLS
                     ARQPVLAMADLDAALKREPNDVETLMRRGELFLATRAPEKAREDFEAATRLAPDNSEL
                     PERIGTAFGRAGQFEPAIQQLNLWITAHPKSEDLPRVLSSRCFARAAWGKELDAALAD
                     CDAALRKNKVSEVMGNRGLVLLRMGKLDEAIAQYNAAVGLQPRYAPALYGRGLAELKK
                     GDKAKGEADIAAAKAIAPGLAQQYQRYGLAPDAAPAASTS"
     gene            1953..>2410
                     /locus_tag="VHN39_18860"
     CDS             1953..>2410
                     /locus_tag="VHN39_18860"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: protein motif:HMM:NF025341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="retropepsin-like aspartic protease"
                     /protein_id="HEX2818461.1"
                     /translation="MTKGLMVAACAALAVMGAAFSAGAAAAVGACQMAKVADLPVTMV
                     GTQPLVTAKINGKDGLFLIDTGSFYSVLAQGAVETYGLKTYPAPSTFAIVGVAGVRST
                     ASISKVAEFTYAGIPIRQISFLVSGGGYGPGVVGVIGQNLLGAVDVEYDLA"
BASE COUNT          385 a          817 c          831 g          377 t
ORIGIN      
        1 atggacgaga gactgggcgg ctaggcttcc ttatgccgcg ctgatggacc ttccccccac
       61 ttcgctttgc cccctagagt tgcgcatgac tcccagagtt ctcgcttccg ccgccgccct
      121 gtccgtcctg gccttcgcca gagcggggcc ggcgtcggcc gcctgccagt tccagaagat
      181 cgccgaggtg ccggtgacga tggaggggct caggcccacc atcatggcca agatcaacgg
      241 ccaggacgcc aagttcctgg tggatacggg cgccttcttc ggcggggtga ccgccgacac
      301 cgcggccaag tacggcatga agcgctcgat tgcgccgttc ggcatgatgg tgcagggggt
      361 gggcggcgtg aagcgcgacg ttcaggcggt ggccgcgcag tccttcacct tcgccggcgt
      421 cggcttccac gacaccgatt tcctgctgct cggccgcatc ggcggcggcg gcgtcgccgg
      481 caacatcggc gagaacctga tgggtccgtt cgacgtggag tacgacttcg ccaacggcct
      541 catccgctat ttcaaggcga cgggctgcgc ctacgactcc aatctcgcat actggtcggc
      601 gggccttgcg gtgtcgcggg tgtcgatcat cgacccgagc agcatcctgc tgaaggtgat
      661 caccaatgcg aaggtggacg gccacaccat ccgcgtgacc ttcgattccg gctcgtccct
      721 gtcggtgatg agccgccccg ccgcgtcgcg ggccggtatc caggtgaact ccgagggcgt
      781 ggtcaacggc gggatcagct acggcatcta cggaaagggc ctggacagtt tcctggcccc
      841 cttcggcagc ttcaagatcg gcgacgagga gatcaagaac acccggctgc gggtcgccga
      901 catcgacctg cctgccagcg acatgctgct gggggcggac ttcttcttgt cgcaccgcat
      961 cctgatctca aacagccaga agaaggtcta ttttacctac aacggcgggc cggtgttccg
     1021 gctcgaccag cagcagccgg cgcgggccgt ggcggccgcg gcgccaacct cgccggccga
     1081 aagcgccgag gccgcgacgc cgggcgacgg accgaagacg gccgcagagt tcgcccggcg
     1141 ggcctcggct tccgccgcgc gccgcgactt ccagccggcc atcgccgact acacacgcgc
     1201 catcgagctg gagccggaca acgcccgcca ctatcgcgac cgcgcgctgg cgcggctgtc
     1261 ggcgcgccag ccggtgctgg cgatggctga cctggacgcc gccctgaagc gcgagccgaa
     1321 cgatgtcgag accctgatgc gccgcggtga actcttcctg gcgacccgcg cgccggagaa
     1381 ggccagggaa gacttcgagg cggcgacgcg gctcgcgccg gacaattccg aactgcccga
     1441 gcggatcggc acggcctttg gccgcgcggg ccagttcgag ccggccatcc agcagctcaa
     1501 cctgtggatc accgcccatc ccaagagcga ggacctgccc cgggtgctga gctcacgctg
     1561 cttcgcccgc gcggcctggg gcaaggagct cgatgcggcg ctggccgact gcgacgcggc
     1621 gctgcgcaag aacaaggtct ccgaggtgat gggcaaccgc ggcctggtgc tgctgcgcat
     1681 gggcaagctg gacgaggcga tcgcgcagta caacgccgcc gtcggcctgc agccgcgata
     1741 cgccccggcg ctttacgggc gcggattggc agaactgaag aagggcgaca aggccaaggg
     1801 tgaggccgac atcgccgcgg ccaaggcgat cgcgccgggc ctggcccagc agtatcagcg
     1861 ctacggcctg gcgccggacg ccgccccggc ggcctcgaca tcatgagata tatggcgctt
     1921 gcctaggtga gctttccggg gggccgggct cgatgaccaa aggattgatg gtggcggcgt
     1981 gcgcggccct ggccgtgatg ggcgcggcct tttccgccgg ggcggcggct gcggtcggcg
     2041 cgtgtcagat ggcgaaggtc gccgacctgc cggtgaccat ggtcggaacc caaccgctgg
     2101 tcaccgccaa gatcaacggc aaggacggcc tgttcctgat cgatacgggc agcttctatt
     2161 cggtgctggc ccagggagcg gtggagacct acgggctcaa gacatatccc gcgccgtcga
     2221 ccttcgcgat tgtcggcgtc gccggcgtgc gctccaccgc atcgatcagc aaggtcgccg
     2281 aattcaccta tgccggcatc ccgatccgcc agatcagctt cctggtgagc ggcggcggct
     2341 atggccctgg cgtggtcggc gtgatcggcc agaacctgct gggcgccgtc gatgtggaat
     2401 acgacctggc
//
LOCUS       DATAJL010001000         1875 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113325,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001000 DATAJL010000000
VERSION     DATAJL010001000.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1875)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1875)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113325"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..262)
                     /locus_tag="VHN39_18865"
     CDS             complement(38..262)
                     /locus_tag="VHN39_18865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818462.1"
                     /translation="MIFDVRLPIGLLFLAIGLLVAAVGLTGDPKVFEAHSAGLNIDLV
                     WGLVMAGFGAVMLVLAAVHRRHTPPSADEG"
     gene            complement(272..>1875)
                     /locus_tag="VHN39_18870"
     CDS             complement(272..>1875)
                     /locus_tag="VHN39_18870"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818463.1"
                     /translation="GAKYGIVTSHFYWIGAIPAMCFVGIFMMPFYYGSKARSVPEYLR
                     LRFDEKTRALNATIFALMTILNSGISMYALAKLIQTLHVFDIPFERMGLPQAWIFHAA
                     IGASALVVLAYIYMGGLRGAIYNEVLQFFLIVAGFAPLVWLGLKQVGGWHGLETTLGP
                     SYTQAWHGMAHATTNRLGVDWFGLSMGLGFVLSFGYWCTDFLVVQRAMAANSMSAARR
                     TPLIAAGVKMFIPFIVILPGLIAIALTSAPDKTGALNHPVAVAGAVQQHDPGVIPIKI
                     DSASGKPMLDARGRPQLDYDLATPNLLLRYFPTGMLGVGLTALLASFMSGMAGNVTAF
                     NTVFTYDIYQAYIRRKAPDGHYVLVGRLATFFGIAASVAAAYLASQFNNINDFLQLIM
                     AFVNAPVFATFLLGMFWKRTTGHGAFTGLAAGTLTAAIHHGLTLPLDDIVGLKGGWMA
                     VLHTYPSEMAQNFWTAIWAWSACFITTIVVSLVTRRQPEEALAGLTYSLTPKIEGEQG
                     PWYTRPVVLGVIMITAVIILDVIFR"
BASE COUNT          348 a          589 c          663 g          275 t
ORIGIN      
        1 cgactggatc gcccgcaagg cctgacgagc gccgcgccta gccttcgtcg gcggagggcg
       61 gcgtgtgccg gcggtgaacc gcggccagca ccagcatcac cgcgccgaag ccggccatca
      121 ccaggcccca gaccaggtcg atgttcaggc cagcggaatg agcctcgaac accttcggat
      181 cgccggtgag accaaccgcg gccaccagca gcccgatggc caggaagagc aggccgatcg
      241 gcagacgcac gtcgaagatc atggcgggct cctaacggaa gatgacgtct aggatgatga
      301 cggcggtgat catgatcacc cccaggacga caggccgcgt gtaccaaggg ccctgctcgc
      361 cctcgatctt gggcgtcagg gaataggtca ggcccgcgag cgcttcttcg ggctggcggc
      421 gggtcaccag gctgacgaca atggtggtga tgaagcaggc gctccaggcc cagatcgcgg
      481 tccagaagtt ctgcgccatt tcgctgggat aggtgtgcaa caccgccatc cagccgccct
      541 tcagcccgac gatgtcgtcg agcggcagcg tcaggccgtg atggatcgcg gctgtcaggg
      601 tgccggccgc caggcccgtg aaggcgccat ggccggtggt ccgcttccag aacatgccga
      661 gcaggaaggt cgcgaacacc ggggcgttca cgaaggccat gatcagttgc aggaagtcgt
      721 tgatgttgtt gaactggctc gccagatagg ccgccgccac cgaggccgcg atgccgaaga
      781 acgtcgctag gcgccccacc aggacgtagt gcccgtcggg agccttccgt cggatgtagg
      841 cctggtagat gtcgtaggtg aagaccgtgt tgaaggcggt gacgttgccc gccattcccg
      901 acatgaagct ggccagcagc gcggtcaggc cgacccccaa catgccggtc ggaaagtagc
      961 gcagcaagag gttcggcgtc gccaggtcgt agtccagctg cggccggccg cgggcgtcga
     1021 gcatcggctt gccggaggcg ctgtcgatct tgatcgggat gacgcccggg tcgtgctgct
     1081 ggaccgcgcc ggccaccgcc accgggtggt tgagcgcgcc ggtcttgtcc ggcgccgagg
     1141 tcagcgcgat ggcgatcagg ccgggcagga tgacgatgaa ggggatgaac atcttcacgc
     1201 ccgcggcgat cagcggcgtg cgccgggccg ccgacatgga gttggccgcc atggcccgct
     1261 ggaccaccag gaagtcggtg caccagtagc cgaacgacag gacgaacccg aggcccatgg
     1321 aaagcccgaa ccagtcgacg ccgagccgat ttgtggtggc gtgcgccatg ccgtgccagg
     1381 cctgggtgta gctgggaccc agcgtggtct ccaggccgtg ccagccgccg acctgcttca
     1441 ggcccagcca gacgagtggc gcgaagcccg ccacgatcag gaagaactgc aggacctcgt
     1501 tgtagatcgc ccccctgagg ccgcccatgt agatgtaggc cagcaccacg agcgccgagg
     1561 cgccgatggc ggcgtggaag atccaggcct ggggcaggcc catccgctcg aaggggatgt
     1621 cgaagacgtg cagcgtctgg atcagcttgg ccagggcgta catcgagatc ccggagttca
     1681 ggatcgtcat cagggcgaag atcgtggcgt tcagcgcccg ggtcttctcg tcgaaccgca
     1741 ggcgcaggta ctccggcacc gagcgcgcct tggagccgta gtagaacggc atcatgaaga
     1801 tgccgacgaa gcacatggcc gggatggcgc cgatccagta gaagtggctg gtgacgatgc
     1861 cgtacttggc gccgg
//
LOCUS       DATAJL010001001         2049 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113436,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001001 DATAJL010000000
VERSION     DATAJL010001001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113436"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..596)
                     /locus_tag="VHN39_18875"
     CDS             complement(<1..596)
                     /locus_tag="VHN39_18875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX2818464.1"
                     /translation="MLLKGLKVVEFASYIAAPGAACMLGDWGADVIKVERPGGDSMRH
                     VFADVKSELNGNPTFDLDNRGKRAVVLDVGKPEGREALARLAATADVFITNVRPAALK
                     RAGLDEATLRAANPRLVYTIVTGYGLEGPDAHKPGFDVTAFWARAGVANMTAPKGQDP
                     FILRSGFGDHITTLATVSATLAALYEREQTGQGRLVATS"
     gene            complement(688..1062)
                     /locus_tag="VHN39_18880"
     CDS             complement(688..1062)
                     /locus_tag="VHN39_18880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2818465.1"
                     /translation="MREMKILFVEDDVVLNLATSVALEDEGVDMKCVYSGPAAIEAIT
                     SLEYLDALLTDIDLGKGPDGFDVARYARKLYPHLPVVFVSGTMGLHHAANGVEGSVFV
                     AKPFHPAQLMRALDQAIHREAA"
     gene            1351..>2049
                     /locus_tag="VHN39_18885"
     CDS             1351..>2049
                     /locus_tag="VHN39_18885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2336 domain-containing protein"
                     /protein_id="HEX2818466.1"
                     /translation="MATTRSALTEEDIRTLVKGVTAEERAAAAYKLCRSIDTGQLSDE
                     DREAASEILRVMAADAAELVRRALVVTLKDSPLVPRDVALKLARDVENISLPMLNCSP
                     VFLDSDLAEIVRLGGPVRQLAIARRPMLSRTVTDAIAEHGGERAVAAACANDNADFAE
                     GALQQVMARFEQHEKVLAAVAYRAVLPLSVSEKLVTLVGDEVRDHLIAHHAMGPETAL
                     AIAVGAAERATVDLV"
BASE COUNT          336 a          678 c          689 g          346 t
ORIGIN      
        1 gaggtcgcca ccagacggcc ctggccggtc tgttcgcgct cgtagagggc cgcgagcgtc
       61 gccgagacgg tggcgagtgt cgtaatgtgg tcgccgaagc ccgagcgcag gatgaagggg
      121 tcctggccct tgggcgcggt catgttcgcg acgccggcgc gcgcccaaaa tgccgtgacg
      181 tcaaagccgg gcttgtgggc gtcgggtccc tcgaggccgt agccggtgac gattgtgtag
      241 acgagccgcg gattggccgc gcggagggtc gcctcgtcga ggcccgcgcg cttcagggcc
      301 gcgggccgca cattggtgat gaagacgtcg gcggtggcgg cgagcctggc cagcgcctcc
      361 cggccctcag gcttgccgac atccagcacc accgcgcgct tgccgcggtt gtcgaggtcg
      421 aaggtggggt tgccgttgag ctcgcttttc acgtcggcga agacgtggcg catcgagtcg
      481 ccgcccggcc gctcgacctt gatcacgtcg gcgccccagt cgcccagcat gcaggcggcc
      541 cctggggcgg cgatgtagga ggcgaattcg acgaccttca ggcccttgag cagcacgcgg
      601 cgtctccccg ttttgcccca tgctagagca tcacggcctc ccgaggtcta gccccgcgcc
      661 tgcgtcgcga tccgccacag ccgcagatca ggcggcctca cggtggatcg cctggtctag
      721 cgccctcatg agctgggccg ggtggaaggg cttggcgacg aacaccgagc cttcgacccc
      781 gttcgcggcg tggtgaagcc ccatggtccc tgagacgaac accactggca ggtgcggata
      841 gagtttgcgg gcgtaacggg cgacgtcgaa tccgtccggg cccttgccca ggtcgatgtc
      901 ggtcagaagc gcgtccaggt attcaagact tgttattgcc tcaattgccg caggtcctga
      961 atatacacat ttcatgtcga cgccttcgtc ctccagcgcc acgctagtcg ccaagtttag
     1021 gacaacgtca tcttcaacga acaggatttt catttcacgc ataacactgt tcctttggat
     1081 tatatcaacc ccgggggacg gcttatgttt ccattcaacg taaaatatat ttcagaaccg
     1141 acattggagt cctacggtcg gatcgacacc atgccccaca cgagccatcc tagggcgatc
     1201 gcggccgccg cgaacctcgg gggaaatccc taggcccaca gattcgagtc ctaacccccc
     1261 gttaagcatg acgggggaca gtcagactcg tgggagttcg gatccggggg tgggttcgca
     1321 ggagcccgcg gcgaggaatt caggcaggcc atggcgacca ctcgatcagc gctgacggaa
     1381 gaggatatcc gtacgctggt gaagggcgtg accgccgagg agcgcgccgc cgccgcctac
     1441 aagctctgcc gttccatcga caccggccag ctcagcgacg aggaccgcga ggcggcgtcc
     1501 gagatcctgc gggtcatggc cgccgacgcc gccgaactgg tgcgccgggc cctcgtcgtc
     1561 acgctcaagg attcgccgct ggtgccgcgc gacgtggcgc tgaagctcgc ccgcgatgtg
     1621 gaaaacatct ccctgccgat gctcaactgc tcgccggtgt tcctggactc cgacctggcc
     1681 gagatcgtgc ggctgggcgg accggtccgg caactggcca tcgcgcgccg gccaatgctg
     1741 tcgcgcaccg tcaccgacgc catcgccgag cacggcgggg agcgcgcggt ggccgcggcc
     1801 tgcgccaacg acaacgcgga cttcgccgag ggcgccctgc agcaggtgat ggcccgcttc
     1861 gagcagcacg agaaggtgct ggccgcggtc gcctatcgcg ctgtcttgcc gctgtcggtc
     1921 agcgagaagc tggtgaccct ggtgggcgac gaggttcgcg accatctgat cgcccatcat
     1981 gccatgggcc cggagaccgc gctcgccatc gccgtcgggg ccgccgagcg ggcgaccgtc
     2041 gacctggtc
//
LOCUS       DATAJL010001002         2146 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113545,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001002 DATAJL010000000
VERSION     DATAJL010001002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2146)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2146)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2146
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113545"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..864
                     /locus_tag="VHN39_18890"
     CDS             <1..864
                     /locus_tag="VHN39_18890"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2818467.1"
                     /translation="PREIAVVGCGALGLTSAILAQEAGAKVTIYAKDLLPDARSARAT
                     GSWTPDSRIALAQAAGPAFGELWEEMARISFKRYRRYLGLPGTPVEWRDRYVLIDDQP
                     APAAPVAPGAPAPLDFAEYGDRISDITPRGERMPAGSTPFPMQRVRRASQLQFNVADY
                     SHTLMADFLAAGGRVERREFHSLSELATLPEKVVINCPGYGARALCRDESVTPVRGQI
                     AWLIPQPEVDYGLYYRGVGMLSRRDGIVVQALWGGDMFGYGDDHEVIDRAESERAVNI
                     LAELYGRMTGG"
     gene            872..1441
                     /locus_tag="VHN39_18895"
     CDS             872..1441
                     /locus_tag="VHN39_18895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818468.1"
                     /translation="MGPFEYLLLFAAIILGLAVCDLATSLHRLLGAGARVRWDWLAPL
                     AAVVAFLKIVTQWWTWFGVERIARGLTFEMFLGVLIGAVLLFLMAAAALPDEIHEGPV
                     DLRVYYAGVSRRFWILFTLHWVLTTGISIWAQMQIEGARLSLASPVYLMIPLAISLAV
                     IRNRWWHTICLTGLIVLYVGQFFGHALAG"
     gene            complement(1430..1810)
                     /locus_tag="VHN39_18900"
     CDS             complement(1430..1810)
                     /locus_tag="VHN39_18900"
                     /inference="COORDINATES: protein motif:HMM:NF025607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4345 family protein"
                     /protein_id="HEX2818469.1"
                     /translation="MNAALERRLLQAVIAIAGFVPVGAGLWGALGRMGTIGSASASEA
                     RYLSGLLLGIGLVFWACIPTIERRGAVVRALAAIVAIGGLARVLGALQTGFPSAVVLP
                     LVMELGVTPAIALWRERVERRLAR"
     gene            complement(1807..>2146)
                     /locus_tag="VHN39_18905"
     CDS             complement(1807..>2146)
                     /locus_tag="VHN39_18905"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012520681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEX2818470.1"
                     /translation="DIARVPEFNARVYEIARAIPPGETLTYGEIAVKLGDRLLARDVG
                     AALGQNPWPIVVPCHRVTAAGGKLGGFSARGGVNTKVKLLAIEGAAVLQPPPPKPPKA
                     QPAAQPSLFD"
BASE COUNT          299 a          766 c          752 g          329 t
ORIGIN      
        1 cccagggaga tcgccgtcgt cggctgcggg gcgctgggct tgacctcggc gatcctggcg
       61 caggaggccg gcgccaaggt caccatctac gccaaggacc tgctgcccga cgcccgatcg
      121 gcccgcgcca cggggagctg gacgccggac agccgcatcg cgctcgccca ggccgcgggc
      181 cccgccttcg gcgagctctg ggaggagatg gcgcggattt ccttcaagcg ctatcgccgc
      241 tacctcggcc tgccggggac gccggtggaa tggcgcgacc gctacgtcct gatcgacgac
      301 cagccggctc cggccgcccc cgtggccccg ggcgcgcccg cgccgctcga tttcgccgaa
      361 tatggcgacc gcatcagcga catcacccca cgcggcgaac ggatgccggc ggggtccacg
      421 ccctttccga tgcagcgggt gcggcgcgcc tcgcagctgc agttcaatgt cgccgactac
      481 agccacaccc tgatggccga tttcctggcg gccggcgggc gcgttgagcg gcgggaattc
      541 cacagccttt ccgagctggc gacgctcccc gagaaggtgg tcatcaactg cccgggctat
      601 ggggcgcggg ctctgtgccg cgacgagtcc gtcacgccgg tgcgcggcca gatcgcctgg
      661 ctgatcccgc agcctgaggt ggactacggc ctctactacc gcggtgtcgg catgctctcg
      721 cgccgcgacg gcatcgtggt ccaggcgctg tggggcggcg acatgttcgg ttatggcgac
      781 gaccacgagg tgatcgaccg cgccgagtcc gagcgggcgg tgaacatcct ggccgagctt
      841 tacggacgca tgaccggggg ctgagggcgc gatggggccg ttcgaatatc tgctgctgtt
      901 cgcggccatc atcctgggcc tggcggtgtg cgacctggcg accagcctgc accggttgct
      961 gggggctggt gcgcgggtca ggtgggactg gctggcgccg ctggccgccg tcgtcgcctt
     1021 cctgaagatc gtcacccagt ggtggacctg gttcggggtg gagcggatcg cccgcggtct
     1081 gaccttcgag atgttcctcg gcgtcctcat cggcgcggtc ctgctgttcc tgatggccgc
     1141 ggccgccctg cccgacgaga tccatgaggg gccggtcgat ctgcgcgtct actacgcagg
     1201 ggtctcgcgg cgcttctgga tcctgttcac cctccactgg gtgctgacga ccggcatcag
     1261 catctgggcg cagatgcaga tcgagggcgc gcggctcagc ctcgcgtctc cggtctatct
     1321 gatgatcccg ctggcgatct cgctggcggt catccgcaac aggtggtggc acaccatctg
     1381 tctgacgggc ctcatcgtgc tctacgtcgg ccagttcttc ggccacgccc tagcgggcta
     1441 ggcgccgctc cacccgctcg cgccagagcg cgatggccgg cgtgacgcca agctccatga
     1501 ccaggggcag gacgaccgcg ctgggaaatc cggtttgcag ggcgcccagc acccgcgcca
     1561 agccaccgat cgcgacgatg gccgccagcg cgcgcacgac cgcgccccgc cgctcaatgg
     1621 tggggataca tgcccagaag accaggccga tgcccagcag caggccggac aggtaacgcg
     1681 cctcgctggc cgaagccgac ccgatcgtcc ccatgcggcc gagcgcgccc cacaggccgg
     1741 cccccaccgg cacgaacccc gcgatggcga tgaccgcctg cagcagccgg cgttcgagcg
     1801 ccgcgttcaa tcgaacagcg aaggttgggc cgccggctgc gctttcggcg gcttgggcgg
     1861 cggaggctgc agcaccgccg cgccttcgat agccagcagc ttgaccttgg tgttgacccc
     1921 gccgcgggcc gaaaaaccgc cgagcttgcc gccggccgcg gtcacccggt ggcagggcac
     1981 cacgatgggc caggggttct ggccgagcgc cgcgcccacg tcgcgggcga gcagcctgtc
     2041 gcccaacttc acggcgatct cgccataggt cagggtctcg cccggcggga tggcgcgggc
     2101 gatctcatac acccgggcgt tgaactccgg gacccgggcg atatcg
//
LOCUS       DATAJL010001003         9577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113571,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001003 DATAJL010000000
VERSION     DATAJL010001003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 9577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9577
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113571"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..242)
                     /locus_tag="VHN39_18910"
     CDS             complement(<1..242)
                     /locus_tag="VHN39_18910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HEX2818471.1"
                     /translation="MVQIKSVGVIGAGQMGTGIAHVVALGGYDVLLHDVSAERLEAGM
                     GLIHRNLTRQVTRGIVTQDQMDAALAHISPAPELQT"
     gene            complement(391..1293)
                     /locus_tag="VHN39_18915"
     CDS             complement(391..1293)
                     /locus_tag="VHN39_18915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR substrate-binding domain-containing
                     protein"
                     /protein_id="HEX2818472.1"
                     /translation="MRRLPPYFALRALEAAARRRSYSRAAEELAVTHGAVSQQIRRLE
                     VELGARLFRRQGNGMIPTPEAQRLADRIAAAQTILGDAVREFTSSASCDALVVSIDPQ
                     LGVRWLPQRLARLLADPAGANLDLRFEERLADFVTDGVDVGLRYGHGQTEGVESVLLF
                     REQLFPVCSPSLAGHQAIRTPEDLLTATLLRHTHRPWRLWFSCFDLPEPAPSGPEFDD
                     SLMIAEAAAQGMGVALARSSLVQQDLETGRLIRLLPEAVENDFAFYVAWRADNPKLSR
                     IHALRDWLVAEIGPESGADGTSDF"
     gene            1419..1805
                     /locus_tag="VHN39_18920"
     CDS             1419..1805
                     /locus_tag="VHN39_18920"
                     /inference="COORDINATES: protein motif:HMM:NF024503.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HEX2818473.1"
                     /translation="MKTQILALSAAALLLAASAAAAAPSESQQYAAFVDAKAESLLRA
                     TGIDPQGQPVSVRATVSPDGHLTGLKVLRSSGSPDTDRAVAAVLQKVLVAHAPVGLLD
                     GAVTLSVGQGVGLQAQAQAEAQSQAR"
     gene            complement(1928..2872)
                     /locus_tag="VHN39_18925"
     CDS             complement(1928..2872)
                     /locus_tag="VHN39_18925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEX2818474.1"
                     /translation="MAVLVIADHDNAHLRDTTEKTVTAALKLSSDVDILVAGKGAKGV
                     ADAAAKITGVRKVLLAESTELGEGLAESMEALVVPLMANYDAVLTPATSQGKNFSPRI
                     AAKLDVAQISEIVDVIDANTFVRPIYAGNALETVQSSDGKKVITVRPTVFKAAADGGS
                     AKIESIPAPAKPAKTHFVDQKLVKSARPELSGAKIVVSGGRAMGSAEEFQKVIEPLAD
                     KLGAAVGASRAAVDAGYAPNDYQVGQTGKVVAPELYIAIGISGAIQHLAGMKDSKVIV
                     AINKDADAPIFQVADYGLVADYKTAVPELMAALTAAGK"
     gene            complement(2872..3621)
                     /locus_tag="VHN39_18930"
     CDS             complement(2872..3621)
                     /locus_tag="VHN39_18930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HEX2818475.1"
                     /translation="MKVLVPVKRVIDYNVKARVKPDQTGVDLANVKMSMNPFCEIAVE
                     EAVRLKEKGVATEVVAVSIGPAQASETLRTALAMGADRAILVQTTEDLEPLAVAKVLK
                     ALVAKESPDLVIMGKQAIDGDNNAVGQMLATLLDWPQATFASAIEVSGKKAKVTREVD
                     GGLQTLEVDLPAVITADLRLNEPRYASLPNIMKAKKKELAIEELVSLGVDTAPRLKVM
                     KVTEPPKRAGGIKVETAADLVSKLKTEAGVL"
     gene            3788..4066
                     /locus_tag="VHN39_18935"
     CDS             3788..4066
                     /locus_tag="VHN39_18935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818476.1"
                     /translation="MNPTIERLKLIFLGIFAVANAAILVWTLGWAMPEQKCMEAHKWW
                     DGQARICAQPILTSDITGRMIVNQQARDDALKAIGRAPAAATPTAPKP"
     gene            complement(4063..4638)
                     /locus_tag="VHN39_18940"
     CDS             complement(4063..4638)
                     /locus_tag="VHN39_18940"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013080728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEX2818477.1"
                     /translation="MVTLNRIYTRTGDAGSTRLASGATVSKADLRVETYGAVDETNAC
                     LGLARAHTAGAGEFDAILARLQNELFDLGADLATPAKADEPEGSKLRILDSQVARLEG
                     EIDALNAELPPLASFVLPGGTAAAAALHLARTVCRRAEREAVRLVEAGEPVSGPALRY
                     LNRLSDLLFVAARYANDKGASEVFWSSGATR"
     gene            complement(4646..4843)
                     /locus_tag="VHN39_18945"
     CDS             complement(4646..4843)
                     /locus_tag="VHN39_18945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013267452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin transmembrane helix small protein"
                     /protein_id="HEX2818478.1"
                     /translation="MDIFTFLIPAALIAVASVLAVGIYSLFRGGDFGRSYSNKLMRLR
                     VVMQALAIAILMGALWWRTKH"
     gene            5200..5805
                     /locus_tag="VHN39_18950"
     CDS             5200..5805
                     /locus_tag="VHN39_18950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2818479.1"
                     /translation="MKAPTRRALAKQQTRVKVLAAARRLFSEEGYEGATIRDIAAAAG
                     MSTGAVFANFSDKSDLFREIMVADMAALADAMREAAGHGAGIEHTLLRMFAAGYEFYK
                     TQLPLARAAFSVGWSPQDGPALRSAAPVQVLNGLIVEQLTKAVERGELGPEDLALRAQ
                     MLFEAYLSNYPQAIFEGWTLDALQDRSRDQIRILLAAARRS"
     gene            5830..6519
                     /locus_tag="VHN39_18955"
     CDS             5830..6519
                     /locus_tag="VHN39_18955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010918619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2818480.1"
                     /translation="MASPRDLSQTDVLGGAPAAPSSASGADGPSGVRQTQKEATRNRV
                     IAAARELFDTQGYHGTTIREIASLAGVSVGSVFTTFSSKDDVLSQVMQDRLDGLYAEL
                     DRVMPHLRGDTLDRLRTMFAIHFAFEVRHTRLFLAHIAAAYDWTLAPAARPMGKNTRL
                     IGIMCDVLTKGVTDGDVDPGIDYQDTCDLLMAAYAWVYRLAAWDDADATAMTAVMDRQ
                     LALIVSGLRRR"
     gene            complement(6605..8251)
                     /locus_tag="VHN39_18960"
     CDS             complement(6605..8251)
                     /locus_tag="VHN39_18960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818481.1"
                     /translation="MSLILPDLPELLDRAGREAEVLVAELQDAVGERVRPGGKLDRAA
                     LDADQHVAHGLAWAAAYAETLRQTAAWAERLIAEEKFGEAEALPAQLLAHEYLSQLAG
                     GLPMNQGEMFRPADLEVSAHRLAPLIARLAPGASQAVKTRIVELLDHARGRASLEASG
                     LDETLEAVSGQFQAFAAAKIAPFAHGWHLRDELIPLELIEEMGRLGVFGLTAPEAWGG
                     SGFGKVAMCVVTEALSRGYIGTGSLGTRSEIAAELLLTHGTDDQKARFLPGIVSGAII
                     PTAVFTEPEAGSDLGSLRTRAARHGDAWRVTGAKTWITHAARADLMTLLVRTDPASKD
                     HRGLSMFLAEKPRGTVAESFPAPGMTGGEIAVIGYRGMKEYEIAFDGFEVTHENLLGG
                     HPGQGFAQLMATFESARIQTAARAIGVAQNALDLALDYALTRRQFGEPLAAFPRVANK
                     LAMMAAEILGARRLAWFAAGAKDQGRRCDLEAGMAKLAAARIAWAAADNAVQIHGGTG
                     FAVEQPVSRVLADARILNIFEGAGEIQAQVIARRLLEGAN"
     gene            8333..8962
                     /locus_tag="VHN39_18965"
     CDS             8333..8962
                     /locus_tag="VHN39_18965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007671262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HEX2818482.1"
                     /translation="MLVVHHLNDSRSQRILWLLEELGAPYEIKPYARDATTRLAPPEL
                     KQVHPLGKSPVITDGDVTINESGAIVDYIVRKYGAGKLAPPVGTAAHEKYLEWLHYAE
                     GSAMLPLMLNMYVGRLGEAGAPLHPRIQSEMANHLSYVEGALAGQDWLLGDFTAADVQ
                     MSFVGEVARAMGQMDKYPNMKAWVERFQARPAYKRSLEKGGAYNLGPAK"
     gene            complement(8967..>9577)
                     /locus_tag="VHN39_18970"
     CDS             complement(8967..>9577)
                     /locus_tag="VHN39_18970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818483.1"
                     /translation="GEWIGSLGGSLRLAFHIARTAEGEYRVTADSPDSGAFDLAATLT
                     VRGETLAIDMPAFGIRYEANWRAADAQWDGRFTQNGASTPLVLRRGTLPPLETVDALD
                     GTWDGLGPGAGGPALLLRFRTRAGHGTSGTLDLPDFNSRNSYLTHIHRAGDRVAMAVE
                     TLGGTLEGRLSADGRTIEARFTAFGVTTPVTLRRRPESPPPS"
BASE COUNT         1511 a         3251 c         3272 g         1543 t
ORIGIN      
        1 atggtctgca gctcgggggc cggggagatg tgggcgagcg ccgcatccat ctggtcctgg
       61 gtgacgatgc cgcgggtgac ctggcgggtc aggttgcggt ggatcaggcc catgccggcc
      121 tccaaccgct cggcgctgac gtcatgcaac aggacgtcgt agccgcccag cgccaccaca
      181 tgggcgatac cggtgcccat ctggcctgcg ccgatgacgc cgaccgactt aatctgaacc
      241 attcaataga gcctcgatga gcgggcgcgc cccaatcgcc tcaaaggaaa tccggcgcgg
      301 ccttcttaat tatgtcgact ttctaacatg gcggcgccgt accgccgcaa ggcttttgct
      361 gcgccgcagc gtggccgtgg ttccgcgtgc tcagaagtcg ctggtcccgt cagcgcctga
      421 ctccggcccg atttcggcga ccagccagtc gcgaagcgca tgaatgcggg agagtttcgg
      481 gttgtcggcc cgccaggcga catagaaggc gaagtcattc tccaccgcct ccggcaggag
      541 ccggatgagg cgaccggtct caaggtcctg ctgcaccagg ctggaccgcg cgagcgcgac
      601 gcccatgccc tgggcggcgg cctcggcgat catcagggag tcatcgaact cggggccgga
      661 gggcgccggc tcgggcaggt cgaaacagga gaaccacagc cgccacggcc ggtgggtgtg
      721 gcgcaacagg gtggcggtga gcaggtcctc aggcgtgcgg atcgcctgat gcccggccag
      781 cgacgggctg cacaccggga acagctgctc gcgaaacagg aggacgctct cgacgccctc
      841 ggtctgcccg tggccgtagc gtaggcccac gtcgacgcca tcggtgacga agtccgccag
      901 ccgctcctcg aaacgcaggt cgagattggc ccccgcgggg tcggccagca gccgggccag
      961 ccgctgcggt agccagcgca cgcccagttg cggatcgatg ctcaccacca gggcgtcgca
     1021 cgaggcggaa ctggtgaatt ctctgacggc gtcgcccaga atcgtctgcg ccgcggcgat
     1081 ccggtccgcc aggcgctgag cctccggcgt cgggatcatg ccgttgccct ggcggcggaa
     1141 cagccgcgcg cccagctcga cctccagcct gcggatctgc tggctgacgg cgccgtgggt
     1201 gacggccagc tcttcggccg cgcggctgta actgcggcgc cgcgcggcgg cctcgagggc
     1261 gcgcagggcg aagtagggcg gcaggcgtct catgggcagg gttgttagct gaagtaacaa
     1321 ctccgagcaa aatctatcgt tcgtaaccca aggatggcgt tcccacatcc tggtcagcgg
     1381 cgctgctgat ttcacgaaca aaaccaagga tgaagaccat gaaaacccaa attctggcgc
     1441 tgagcgcggc tgccctcctg ctcgccgcct ctgccgctgc cgcggcgccc tcggagtcgc
     1501 agcaatacgc cgccttcgtg gacgccaagg cggaaagcct gctgcgcgcc accgggatcg
     1561 atccgcaagg ccagcccgtc tcggtgcgcg ccacggtcag cccggacgga catctgacgg
     1621 gcctcaaggt cctgcgctcg tccggctctc ccgacaccga ccgcgccgtg gcggccgtgc
     1681 tgcagaaggt tctcgtcgcc catgcgccgg tcgggcttct cgacggggcc gtcaccctga
     1741 gcgtgggcca gggcgtcggc ctgcaggcgc aggcccaggc tgaagcccag tctcaggcgc
     1801 gttagcggct ggcgccgagt gcgcgggcca agaaaaaggg gcggtccctg gctgggccgc
     1861 ccctttcgtt tgcctgtcgc ggcccggcga cttgccggcg gccgtctcga cttgcccgcg
     1921 gccgacgcta tttgcctgcg gccgtcaggg cggccatcag ctccggcacg gcggtcttgt
     1981 agtcggccac caggccgtag tcggccacct ggaagatcgg cgcgtcggcg tccttgttga
     2041 tcgcgacgat caccttggaa tccttcatgc cggccaggtg ctggatggcg ccggagatgc
     2101 cgatggcgat gtagagctcg ggggcgacca ccttgccggt ctgaccgacc tgatagtcgt
     2161 tgggggcgta gccggcgtcg accgccgcgc gactggcgcc gacggcggcg ccgagcttgt
     2221 cggcgagcgg ctcgatgacc ttctggaact cttcggccga acccatggcg cggccgccgg
     2281 agaccacgat cttggcgccg gagagctccg gacgcgccga cttcaccagc ttctggtcga
     2341 cgaagtgggt cttggcgggc ttggccgggg ccggaataga ttcgattttg gccgagccgc
     2401 cgtccgccgc cgccttgaag acggtgggac gcacggtgat caccttcttg ccgtcggagg
     2461 actgcaccgt ctcaagcgcg ttgccggcgt agatcggccg gacaaaggtg ttggcgtcga
     2521 tgacgtcgac gatctcggag atctgggcca cgtccagctt ggccgcgatg cgcgggctga
     2581 agttcttgcc ctggctcgtc gccggcgtca gcaccgcgtc gtaattggcc atgagcggga
     2641 ccacgagggc ctccatgctc tcggccaggc cttcgcccag ctcggtgctt tcggccagca
     2701 ggaccttgcg cacgccggta atcttggcgg cggcgtcggc cacgcccttg gcgcccttgc
     2761 cggccaccag gatgtcgacg tcgctggaga gcttcagcgc cgcggtcacc gtcttttcgg
     2821 tggtgtcccg caggtgggcg ttgtcgtggt cggcgatgac gagaacggcc atcagagcac
     2881 ccccgcttca gtcttgagtt tcgagacgag gtcggcggcc gtctccacct tgatgccgcc
     2941 ggcgcgcttc ggcggctcgg tgaccttcat gaccttcagg cgcggcgccg tgtcgacgcc
     3001 cagagagaca agctcttcga tggcgagctc cttcttcttg gccttcatga tgttgggcag
     3061 gctcgcgtac cgcggctcgt tgaggcgcag gtcggcggtg atcacggcgg gcaggtcgac
     3121 ctcgagggtc tgcaggccgc catcgacctc gcgggtcacc ttggccttct tgcccgaaac
     3181 ctcgatcgcc gaggcgaagg tcgcctgagg ccagtcgagc aaggtcgcca gcatctggcc
     3241 gacggcgttg ttgtcgccgt cgatggcctg cttgcccatg atcaccagat cggggctttc
     3301 cttggcgacc agggccttca gcaccttggc gacggccagg ggttccaggt cctcggtggt
     3361 ctgcaccagg atcgcgcggt cggcgcccat ggcgagcgcc gtgcgcagcg tctcgctggc
     3421 ctgggccggg ccgatggaga cggcgacgac ctcggtggcg acgccctttt ccttgagacg
     3481 cacggcctct tcgaccgcga tttcgcagaa gggattcatc gacatcttca cattggcgag
     3541 gtcgacaccc gtctggtcgg gcttcacccg cgccttgacg ttgtaatcga tcacccgctt
     3601 gaccgggacc aacaccttca tgggcgcgct ctcaaatttc ttagggaaaa acggctcgtg
     3661 cttgggccat agcgtttccg gcgcagtttg caaaccgcgc ggcccgtatg cggcatccac
     3721 gaagacccgg acctggacgc cgtcgagcgg ctagccagcg ccggctttca tcccttaaga
     3781 agaacccatg aacccgacga tcgagcgcct gaaactgatc ttcctcggca tcttcgccgt
     3841 ggccaacgcc gccatcctgg tctggaccct gggttgggcc atgcccgagc agaaatgcat
     3901 ggaggcccac aaatggtggg acgggcaggc gcggatctgc gcccagccga tcctgacgtc
     3961 ggacatcacc gggcggatga tcgtcaacca gcaggcccgg gacgacgcgc tcaaggctat
     4021 cggccgcgcg ccggcggcgg ctactccgac ggcgcccaaa ccctagcgcg tcgcgccgga
     4081 actccagaac acctcgctgg cgcccttgtc gttggcgtag cgcgcggcga cgaacagcag
     4141 gtccgacagt cggttgagat agcgcagggc cggtccgctg accggttcgc cggcttcgac
     4201 cagccgcacg gcctcgcgtt cggcccgccg acagaccgtg cgcgccagat gcagggccgc
     4261 ggcggccgcg gttccgcccg gcaggacgaa ggaggcgagc ggcggcagtt cggcgttgag
     4321 cgcgtcgatc tcgccctcca gtcgtgcgac ctggctgtcg aggatgcgta gcttggagcc
     4381 ttccggctcg tccgccttgg ccggggtcgc cagatccgct cccaggtcga agagttcgtt
     4441 ctgcaggcgg gccaggatgg cgtcgaactc gcccgcgccg gcggtgtggg cgcgagccag
     4501 gcccaggcag gcattggtct cgtcgaccgc gccataggtc tcgacccgca ggtcggcttt
     4561 cgagaccgtg gccccactgg ccaagcgcgt cgatccggcg tcgccggtgc gggtgtagat
     4621 gcgattcagg gtgaccatga tgagctcaat gcttggtccg ccaccataac gcgcccataa
     4681 gaattgcgat ggcgagggct tgcatgacca cccgaagccg catcagtttg ttggagtagg
     4741 accgtccgaa gtcgccgccg cggaacaggg agtagatgcc gaccgccagc accgaggcga
     4801 ccgcgatcag ggcggcgggg atcaagaagg tgaatatgtc cattgggata tcttaatgta
     4861 ccgcggggtt gcgaactaca gtcaaggagg gtatgcggcc attccccaac ctgttggtga
     4921 gcgtgttcag cgagcccaat tcgctgaaac ggtcgaattt cggccccact cggagcgcat
     4981 acgggaagcc tacgtccgcc tgcagcgctc agccagcctc aagttaccca gcacgcgcca
     5041 agaaattgcg tccatgggct ccggtaactt gatccatgaa catgttcacc gaaccgtgtc
     5101 tggacgcacg gatcgggccg aacaaagcta gagaggacgg ctcagccgtc attgcccatg
     5161 atgcattcca ccaaaatcca ggctgcggaa gatccctcga tgaaggcgcc gactcgccgc
     5221 gccctcgcca agcagcagac ccgcgtcaag gtgctcgccg ccgcgcgccg cctgttcagc
     5281 gaagagggtt atgaaggcgc cacgatccgc gacatcgccg cagccgctgg catgtccacg
     5341 ggcgcggtgt tcgccaactt ctccgacaag tccgatctct tccgggagat catggtcgcc
     5401 gacatggccg ccctggccga cgccatgcgc gaggccgccg gccacggcgc cggcatcgag
     5461 cacacgctgc ttcgaatgtt cgcggcgggc tatgaattct acaaaacgca gttgcctctc
     5521 gcccgcgcgg ccttcagcgt cggctggtcg ccgcaggacg gcccggcgct gcgcagcgcc
     5581 gccccggttc aggtgctgaa cggcctgatc gtcgagcagc tgaccaaggc cgtcgaacgc
     5641 ggggagctcg gtcccgagga tctggcgctg cgcgcccaga tgctgttcga ggcctatctg
     5701 tccaactacc cgcaagcgat cttcgagggt tggacgctcg atgcgctgca ggaccggtcc
     5761 cgcgaccaga tccgcattct tctggcggcc gccaggagga gctaaggctt cggcgccgtc
     5821 tgacaggtca tggcctcgcc tcgcgacctt tcccagaccg acgtgctggg cggcgctccc
     5881 gcagcgccgt cctccgcgtc gggcgccgac ggtccctccg gcgtgcgcca gacgcagaag
     5941 gaagccaccc gtaaccgggt gatcgccgcg gcgcgggagc tgttcgacac ccaaggctac
     6001 catggcacca cgatccgcga gatcgcgagc ctggccgggg tgtcggtggg cagcgtcttc
     6061 accaccttct cctccaagga cgatgtcctc agccaggtca tgcaggaccg gttggatggg
     6121 ctctacgccg aactcgaccg ggtgatgccg catctgcgcg gcgacacgct ggaccgcctg
     6181 cggaccatgt tcgccatcca cttcgctttc gaggtccggc atacccgcct gttcctggcg
     6241 cacatcgcag cggcctatga ctggacgctc gcgccggcgg cccggccgat gggcaagaac
     6301 acgcggctga tcggcatcat gtgcgacgtc ctgaccaagg gcgtgaccga cggcgacgtc
     6361 gatcccggga ttgactatca ggacacctgc gacctgttga tggccgccta cgcctgggtc
     6421 taccggctgg ccgcgtggga cgacgcggac gccacggcca tgaccgcggt catggatcgc
     6481 cagctcgccc tgatcgtcag cggcctgcgc cggcgctgac gaaagatgga tccccgccct
     6541 cgcggggatg agtcggcgct gcgcgcccgc tcaattggcg ccttcaagca ggcgatgctc
     6601 ttgcctaatt ggcgccttca agcaggcgcc gggcgatcac ctgggcctgg atctcgccgg
     6661 ccccttcgaa aatgttgagg atgcgcgcgt cggccagcac gcggctgacc ggctgctcga
     6721 ccgcaaagcc ggttccgcca tggatctgca ccgcgttgtc ggccgcggcc caggcgatgc
     6781 gcgcggcggc aagcttggcc atgccggcct ccaggtcgca gcggcggccc tggtccttgg
     6841 cgccggcggc gaaccaggcg aggcgccgcg cacccaggat ctcggcggcc atcatggcga
     6901 gcttgttggc cacacggggg aaggccgcca acggctcgcc gaactggcgg cgcgtcagcg
     6961 cgtagtccag cgccaggtcc agcgcgttct gcgccacgcc gatggcgcgc gcggcggtct
     7021 ggatccgggc ggactcgaag gtcgccatca gctgggcgaa cccctggccc ggatgtccgc
     7081 ccagcaagtt ttcatgagtg acttcgaacc cgtcgaaggc gatctcgtat tccttcatgc
     7141 cgcgatagcc gatcaccgcg atctccccgc cggtcatgcc gggcgccggg aaggactcgg
     7201 ccacggtccc gcgcggcttt tcggccagga acatcgacag gccccgatgg tccttcgacg
     7261 ccggatcggt gcgcaccagc agcgtcatca ggtcggcgcg cgcggcatgg gtgatccagg
     7321 tcttggcgcc ggtcacccgc caggcgtcac cgtggcgtgc tgcgcgggta cgaagactgc
     7381 cgaggtcgga gcccgcttcg ggctcggtga agacggccgt ggggatgatc gcaccggaca
     7441 cgatgccggg caggaagcgg gccttctggt cgtcggtccc gtgggtcagc agcagctccg
     7501 cggcgatctc cgagcgggtg cccagcgaac cggtcccgat atagcctcgc gacagggcct
     7561 cggtgaccac gcacatggcc accttgccga atccggagcc tccccaggct tcgggcgcgg
     7621 tcaggccgaa gacgcctaag cgccccatct cctcgatcag ctccagcggg atcagttcgt
     7681 cgcgcaggtg ccagccgtgg gcgaaggggg cgatcttcgc cgcggcgaag gcctggaact
     7741 gaccgctgac cgcctccagc gtctcgtcga ggccgctggc ttccagcgag gcccgaccgc
     7801 gggcgtgatc gagcagctcg acaatccggg tcttcaccgc ctgcgatgcg cccggcgcca
     7861 gacgggcgat gagcggcgcg agccgatggg cggagacctc gaggtcggcg gggcggaaca
     7921 tctcgccctg gttcatcggc aggccgccgg cgagctggga cagatattcg tgcgccagga
     7981 gctgggccgg cagggcttcg gcctcgccga atttctcctc cgcgatcagc cgttccgccc
     8041 aggccgcggt ctggcgcagg gtctcggcat aagccgccgc ccaggccagg ccatgggcca
     8101 catgctggtc ggcgtcgagc gccgcgcggt ccagcttgcc gcccgggcgg acgcgctcac
     8161 ccaccgcgtc ctgcagctcg gcgaccagca cctcggcctc gcgtccggcg cggtcgagca
     8221 actcaggcag gtcgggaagg atcaggctca tgggcgacga ctatagcctg ggcttgcttt
     8281 gcgtggcgtc agacggtttt gctgccggcc acataacgaa aaggtcccgc tcatgctcgt
     8341 cgtccaccac ctcaacgact cgcgctcgca gcgcatcctg tggctgctcg aagagctggg
     8401 cgcgccctac gagatcaagc cctacgcccg cgacgcgacc acgcggctcg cgccgccgga
     8461 attgaagcag gtccatcctt tgggcaagtc tccggtgatc accgacggcg acgtcaccat
     8521 caacgagtcc ggcgcgatcg tggactacat cgtgcgcaag tacggggccg gaaaactggc
     8581 gccgccggtc ggaacggccg cacatgagaa atatctggaa tggctgcact acgccgaggg
     8641 ctcggccatg ctgcccctaa tgctgaacat gtatgtgggc cgcctgggag aggccggcgc
     8701 gccgctgcac ccgcgcatcc agagcgagat ggccaaccac ctgagctacg tggagggcgc
     8761 gcttgcgggc caggactggc tcttgggcga cttcaccgcc gccgacgtcc agatgagctt
     8821 cgtgggcgaa gtggcccgcg ccatgggcca gatggacaag tacccaaaca tgaaggcctg
     8881 ggtggagcgg ttccaggcgc ggccggccta taagcgctct ctggaaaaag gcggggcgta
     8941 caatctgggg ccggcgaagt agggcgctag ctcggcggcg gagactccgg ccggcgtctc
     9001 agggtcaccg gcgtcgtcac gccgaacgcc gtgaagcggg cctcaatcgt tctgccgtca
     9061 gcgctgagcc ggccctccaa tgtcccgccc agggtctcca cggccatcgc gacgcgatcg
     9121 cccgcgcggt ggatgtgggt caggtagctg ttgcgggaat tgaagtccgg caggtcgagc
     9181 gttccggagg tgccgtggcc ggcgcgagtc cggaagcgca gcagcagggc cggcccgcct
     9241 gcgcccggac ccaggccatc ccaggtcccg tccagcgcat ccaccgtctc gagaggcggg
     9301 agtgtcccgc gacggaggac cagcggcgtc gaggcgccgt tctgggtgaa tcggccgtcc
     9361 cattgggcgt cggcggcgcg ccagttggcc tcgtacctga tcccgaacgc cggcatgtcg
     9421 atggcgagcg tctcgccgcg aaccgtcagg gtcgccgcaa ggtcgaaggc tccggagtcg
     9481 gggctgtcgg cggtgacccg gtattcgccc tccgcagtcc tggcgatgtg gaaggcgagc
     9541 cgcagggacc cgcccagcga cccgatccac tcgccgg
//
LOCUS       DATAJL010001004         2550 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113589,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001004 DATAJL010000000
VERSION     DATAJL010001004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2550)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2550)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2550
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113589"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..219)
                     /locus_tag="VHN39_18975"
     CDS             complement(<1..219)
                     /locus_tag="VHN39_18975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEX2818484.1"
                     /translation="MDSLPDALVALLGRDHVSLDAAALDCAYSPWTRLGAPRAVLRPN
                     STEQVAAVMRLAHAARAPVVAWGGRTGLV"
     gene            358..1647
                     /locus_tag="VHN39_18980"
     CDS             358..1647
                     /locus_tag="VHN39_18980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818485.1"
                     /translation="MDFGLSERETQWRDRVRAFMTAYVYPAVATYQTQMAVEGAARWQ
                     VVPIVEELKARAYAEGLWNLFLTPSEHDEIEDRGPGLTNLEYALCAEEMGRVGFASEV
                     FNCSAPDTGNMEVLRQYGSAFQKSQWLRPLLAGEIRSAFLMTEPDVASSDATNIQTSI
                     RRDGDSYVINGRKWWSSGVGDPRCKVAILMGKTDPDGARHSQQSQILVPTDAPGFEVV
                     RMLPVFGYDDAPHGHAEVVLRDVRVPVENLILGEGRGFEIAQGRLGPGRIHHCMRAIG
                     ATEVALEKMVDRLLSRVAFGKRLADQSVWEQRIGEARLDIEMTRLLCLKAADMMDKVG
                     NKAAQLEIAMIKVAAPRTALKVLDDAMQAHGGGGMSEDFGLARAYAGMRSLRIADGPD
                     EVHLRAIARLEFGRHGARVRAWRDGETLETARAPARG"
     gene            1931..>2550
                     /locus_tag="VHN39_18985"
     CDS             1931..>2550
                     /locus_tag="VHN39_18985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818486.1"
                     /translation="MTPLTRTQFILPAIAAVAGLSVSSSLHAAEIPPAMMQYVERPEH
                     IQAVMDHARAFIAKDPACRAETARTTAIAIFKPVTFGPDGAPTSGMWKETVRVQGCSR
                     SGIYNVATGVDASGGVHVFAMLPGTSIADSQLERDAVDQALIEARTKAPPNCTVNVVD
                     TAFESYASAANPGVEPGREARTWHEKWTVQGCAASIIVAMTFVPHT"
BASE COUNT          456 a          830 c          865 g          399 t
ORIGIN      
        1 caccaggcca gtccggccgc cccaggccac gacgggcgct ctcgcggcgt gcgcgagccg
       61 catcaccgcg gcgacctgtt cggtggagtt cgggcgaagc accgcccgcg gcgccccgag
      121 ccgcgtccag gggctgtagg cgcaatcgag ggccgcggcg tcgagcgaca cgtgatcgcg
      181 gcccagcaac gcgacgaggg catcggggag gctgtccatc accgcagcgt cgcgcgcgcc
      241 ttgatcgcgg tcaacgccgg ggatcggccc ggccgcgttc tcgccgcttg acgcccgtca
      301 aggcgtcgtg gccacgccgc gcctacgctc cccccgaaac taataaggag acttgtcatg
      361 gatttcggcc tctccgaacg cgagacccag tggcgtgacc gcgtccgcgc cttcatgacc
      421 gcctacgtct acccggcggt ggcgacctac cagacgcaga tggcggtcga gggcgccgcc
      481 cgctggcagg tcgtgccgat cgtcgaggag ctgaaggcgc gcgcctacgc tgaaggcctt
      541 tggaacctgt tcctgacgcc gtccgaacac gacgaaattg aagaccgcgg accgggcctg
      601 accaacctcg aatacgccct gtgcgcggag gagatgggcc gggtcggctt cgcctcggaa
      661 gtgttcaact gctccgcgcc cgacaccggc aacatggaag ttctgcggca atacggctcg
      721 gcgttccaga agtcgcagtg gttgcggccg ctgctggccg gcgagatccg ctcggccttc
      781 ctgatgacgg aacccgatgt ggcctcgtcc gacgccacca acatccagac ctcgatccgc
      841 cgcgacggcg acagctatgt gatcaacggc cgcaaatggt ggtcgtcagg cgtcggcgat
      901 ccgcgctgca aggtcgcgat cctgatgggc aagaccgacc cggacggcgc acggcattcc
      961 cagcagtcgc agatcctggt gcccaccgac gcgcccggct tcgaggtggt gcggatgctg
     1021 ccggtgttcg gctacgacga cgccccgcac ggccatgccg aagttgtgct gcgtgacgtc
     1081 cgggtgccgg tcgaaaacct gatcctcggt gagggccggg gcttcgagat cgcccagggc
     1141 cggttggggc cgggccgtat ccaccactgc atgcgcgcga tcggcgccac cgaggttgcg
     1201 ctggagaaga tggtcgaccg gctattgtcg cgcgtggcct tcggcaagcg gctggcggac
     1261 cagtcggtct gggaacagcg gatcggcgag gcgcgcctgg acatcgagat gacccggctg
     1321 ctgtgcctga aggcggccga catgatggac aaggtcggca acaaggccgc ccagctcgag
     1381 attgcgatga tcaaggtcgc ggccccgcgc acggccctca aggtcctgga cgacgcgatg
     1441 caggctcatg gcggcggcgg catgtcggaa gacttcggcc tggcccgcgc ctacgccggc
     1501 atgcggtcgc tcaggatcgc cgacggcccc gacgaagtgc atctgcgcgc gatcgcgcgg
     1561 cttgagtttg gccgacacgg cgcaagggtg cgcgcctggc gggacggcga aaccctggag
     1621 acggcgaggg cgcctgcgcg tggctagccg ttgatcgtag ggtgcgcctc ggaccggcag
     1681 ttttgggacg cccaccgaag gtccgctttc ggcccaaagc ggactccgcg cgccgagtct
     1741 gaaattcgcc tcattcaaga ccgggcgtga gcgaatttca tacctaagag acaccctaga
     1801 aacagggaac ttgatagcgt cgtcagcgat ttgaagttcg ccaaagccag ccgcagcact
     1861 tgcgaacttc gggatcgggg cgccaaggcc ggtcgtggaa caccgagcta gagtcgtacc
     1921 gcttgggagc atgacgccgt tgacccggac gcaatttatc ctccctgcaa ttgcagcggt
     1981 ggcaggcctg tcggtctcat cgagcctgca cgcggccgaa atcccaccag cgatgatgca
     2041 gtatgtggag cggcccgagc atatccaagc tgtgatggat cacgcgcgag cgttcatcgc
     2101 caaagacccg gcttgcaggg ctgagaccgc tcgaacgacc gcaatcgcca tattcaagcc
     2161 ggtgacgttc ggtcccgacg gcgcgccaac ttccgggatg tggaaggaga ccgtgcgtgt
     2221 ccagggttgc tccaggtcgg ggatttacaa cgtggcgacc ggcgtcgacg caagcggcgg
     2281 cgtccacgta ttcgcaatgc ttccaggcac ttcgatagcg gattcccagc ttgaacgtga
     2341 cgccgtggac caagctctga tcgaggcgag gacgaaggcg ccgccgaatt gcacggtcaa
     2401 tgtcgttgac accgccttcg agagttacgc gagcgctgcc aatcccggcg tagagccggg
     2461 ccgcgaagcg aggacatggc atgagaaatg gacagtccaa ggctgtgcag cgtccatcat
     2521 cgtcgcgatg accttcgtgc cgcacaccaa
//
LOCUS       DATAJL010001005         1800 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113834,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001005 DATAJL010000000
VERSION     DATAJL010001005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113834"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1521)
                     /locus_tag="VHN39_18990"
     CDS             complement(<1..1521)
                     /locus_tag="VHN39_18990"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEX2818487.1"
                     /translation="MTSDAVVKTRWVYAFGGGTADGDASMKDLLGGKGANLAEMSSLG
                     LPVPPGFTITTEACTYYYANAQAYPPNLKDQVAVGLATVEKQTGKAFGDAANPLLVSV
                     RSGARASMPGMMDTVLNLGLNDQTVEGLAKLAGDRRFAFDSYRRFIQMYSNVVLDLDH
                     HMFEEILDEHKERLDVTVDTALSADDWESVVADYKKAVESELGEPFPQDPQAQLWGAV
                     GAVFASWMNDRAKFYRRMHDIPESWGTAVNVQSMVFGNMGETSATGVAFTRNPSTGDN
                     TLYGEFLINAQGEDVVAGIRTPQKIEELGKVLPVAYKQLLEIRKKLEKHYKDMQDIEF
                     TVENGKLYMLQCRNGKRTGFAGVRIAVEMVEEKLIPKEEALRRVDPEALNQLLRPVFL
                     PSAKKAAVEEGRLLAKGLPAGPGAATGKVVFFADEAEALAAKGETNLILCRHETSPED
                     IRGMNASLGFMTAFGGMTSHAALVARQMGKVCIVGCDALSFDYQARVMRVTTPKGLV"
     gene            complement(1538..>1800)
                     /locus_tag="VHN39_18995"
     CDS             complement(1538..>1800)
                     /locus_tag="VHN39_18995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008260445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HEX2818488.1"
                     /translation="SGIVAPESELFFRLGAIEPVLEEALLRDDFSAAMQALAALRGPV
                     DAFFDKVLVNSDVPAERDNRLRLLAKVRDAMGRVADFGQVTG"
BASE COUNT          294 a          607 c          573 g          326 t
ORIGIN      
        1 caccagcccc ttgggcgtgg tcaccctcat cacgcgcgct tggtagtcga acgacagcgc
       61 gtcgcagccg acgatgcaga ccttccccat ctgccgcgcg acgagcgccg cgtggctggt
      121 catgccgccg aacgcggtca tgaagcccag cgaggcgttc atcccacgaa tgtcctccgg
      181 gctggtctcg tggcggcaga ggatgaggtt cgtctcgccc ttggcggcca gcgcctccgc
      241 ctcgtcggcg aagaacacca ccttgccggt ggcggcaccg gggccggccg gcaggccctt
      301 ggccagcagg cggccctcct cgacggcggc cttcttggcc gacggcagga acaccggccg
      361 cagcagctgg ttgagcgcct cgggatcgac ccggcgcagc gcctcttcct tggggatgag
      421 cttctcctcc accatctcga cggcgatgcg cacgccggcg aacccggtgc gcttgccgtt
      481 gcgacactgc agcatgtaga gcttgccgtt ctcgacggtg aactcgatgt cctgcatgtc
      541 cttgtagtgc ttctcgagct tcttgcggat ctcgagcagc tgcttgtagg cgacggggag
      601 gaccttgccc agctcctcga tcttctgcgg cgtgcggatg ccggccacca cgtcctcgcc
      661 ctgggcgttg atcaggaact cgccataaag cgtgttgtcg ccggtggagg gattgcgggt
      721 gaaggccacc cccgtggccg aagtctcgcc catgttaccg aacaccatgg actggacatt
      781 gaccgcggtg ccccagcttt ccgggatgtc gtgcatgcgg cgatagaact tcgcccggtc
      841 gttcatccaa ctcgcgaaga cggcgcccac ggcgccccag agctgggcct gcgggtcctg
      901 cggaaagggc tcgccgagct cgctctcaac ggccttcttg tagtcggcga ccacggattc
      961 ccagtcgtcg gccgacagcg ctgtgtcgac ggtgacgtcg agcctttcct tatgttcatc
     1021 aaggatttcc tcgaacatgt gatgatccag gtcgaggacc acgttcgagt acatctggat
     1081 gaaacggcgg tagctgtcga aggcgaagcg ccggtcgccg gcgagcttgg ccaggccttc
     1141 caccgtctgg tcgttgaggc cgaggttgag caccgtgtcc atcatgcccg gcatcgacgc
     1201 ccgggcgccg gagcgcaccg acaccagcag tggattggcc gcgtcgccga acgccttgcc
     1261 ggtctgtttc tcgacggtcg ccaggcccac ggcgacctgg tccttcaggt tcggcggata
     1321 ggcctgggcg ttggcgtagt agtaggtgca ggcctcagtg gtgatggtga agcccggggg
     1381 caccggcagg cccagcgacg acatctcggc caggttggcg cccttgccgc ccagcaaatc
     1441 cttcatcgag gcgtcgccgt ccgcggtccc gccaccaaag gcgtagaccc agcgcgtctt
     1501 caccaccgcg tcggacgtca tcgatatccc tcgtatctta cccggtaacc tggccgaaat
     1561 cggcgacgcg ccccatggcg tcgcggacct tggccagcaa tcgcaacctg ttgtcccgct
     1621 ccgcaggtac atcggagttc actaagacct tgtcaaagaa ggcgtccacg gggccgcgca
     1681 gagcggctaa cgcctgcatg gcggccgaga aatcgtcccg caagagagct tcttccagaa
     1741 ccggctcgat cgcgcctagc ctaaagaaga gctcgctctc aggggcgaca atccctgaag
//
LOCUS       DATAJL010001006         6344 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_113857,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001006 DATAJL010000000
VERSION     DATAJL010001006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 6344)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6344)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6344
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113857"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..476
                     /locus_tag="VHN39_19000"
     CDS             141..476
                     /locus_tag="VHN39_19000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HEX2818489.1"
                     /translation="MTNALAFAALADPTRREVFERLARGPLAVGDLAQGMPVSRPAVS
                     QHLKVLKEAGLVTDRPDGTRRVYQIDPQGLGQIRAWLDRFWDVALDAFKAEVERAANE
                     TADKGEGQP"
     gene            473..946
                     /locus_tag="VHN39_19005"
     CDS             473..946
                     /locus_tag="VHN39_19005"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2818490.1"
                     /translation="MSQTITPAAIKKTLTVPATPEKAFEIFTDGCGRWWPSTHSIGDA
                     PFKTATIEPRVGGRWYSLTEDGVEHEWGDVLTWEPPARLVLAWRLNGEFTYDPTLLTE
                     VEVRFAALTDGQTRVDFEHRGLERLGAGAAADQIRTGMDGGWATILDSFKAVVGG"
     gene            985..1644
                     /locus_tag="VHN39_19010"
     CDS             985..1644
                     /locus_tag="VHN39_19010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007666822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006749 - glutathione metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HEX2818491.1"
                     /translation="MSEPIVIHGIPGSPYVRKPLLVCEEKGAPYRLAAMAFGTGANKA
                     PEYLARNPFGRIPTIEHGDFVLYEAQAIARYIDQVFDGPSLTPADPRAQARMNQVMNI
                     VDWYVMPSISAGIGFNRVVKPKFGMPADEEAVEKALPMARTCVAALEEILGGKSYFAG
                     DAVSLADLFAYGHFEFLGQTPEGADMLAGSPLLGWMERMAARPSVQNTTWERLAEMAA
                     A"
     gene            1771..2529
                     /gene="dapB"
                     /locus_tag="VHN39_19015"
     CDS             1771..2529
                     /gene="dapB"
                     /locus_tag="VHN39_19015"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEX2818492.1"
                     /translation="MAGALGRMGRFVSDAVEAEAGLTLAARFGRPGGLTGEVLMGQEA
                     ALDAADVVIDFTTPAVSAALAGACAARGGPAVVIGSTGFDDAQLTAIEAASAKVAIVR
                     AANFSLGVNLLMGFVEQAARQLGPEAYDVEIFEAHHRRKVDAPSGTALMLGEAAAAGR
                     GVDLSKVARRARDGITGARPQGEIGFSVMRGGGIVGEHSVTFAGDDEILTLSHSARGR
                     GLFAKGAVVAARWVAGRPPGLYDMRDVLGFSGKG"
     gene            2532..3974
                     /locus_tag="VHN39_19020"
     CDS             2532..3974
                     /locus_tag="VHN39_19020"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase family protein"
                     /protein_id="HEX2818493.1"
                     /translation="MEDLLKRDATEQLAALNAKRVSAVELLKGELAWREQTHGALNAV
                     VAVSLERALEHAAAIDDLRARGEPLGLLAGLPMTVKDTLDVVGLPASSGLRRLKARQA
                     EDASAVKAAKHAGVVIWGKTNTPVMAGDWQTFNALYGTTNNPWDLDRTTGGSSGGAAA
                     ALAAGVTALEIGSDIGGSLRVPASFCGVYSHKPTWGLVDQHGHVPPSPGSWSERDLNV
                     IGPMARSARDLRLLMSVLEDGMLTPKAPPAELKEARIGLWLDEPSFPLDREVRAAIES
                     FAAELSAAGVEVTPIASPLHMPTLMGAYRTLLGAIIGEDMPDKAIRALTRMRGLARWQ
                     VDRGAEAASNAAMTLAYTATHREWMAADAVRARLRHEIGEVFNRFDAILAPIAPVAAF
                     PHDHRPFTRRKLTASDGRTMPYGSMLNWISLATALHLPATAIPAGPTVSGLPVGVQLI
                     GPLHGDARMLALAQAIEENVRGFIPPEMAR"
     gene            complement(3971..4516)
                     /locus_tag="VHN39_19025"
     CDS             complement(3971..4516)
                     /locus_tag="VHN39_19025"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family protein"
                     /protein_id="HEX2818494.1"
                     /translation="MSDPRFADVSLATANYVFSPLASGDGADLLAHLSDPRTVEHMDI
                     AALTDLAGAEAIIAWATGLATSGDGVRWAIRDRTGAFVGTAGFNSLVRERGSRGEIAY
                     DVVRPRWRQGVMAEVLPAVLAYGFGTLGLRRIEAMVTPGNAASAALLERHGFVREAVL
                     RDYAIWKGRYWDQWLYARLAP"
     gene            complement(4513..5145)
                     /locus_tag="VHN39_19030"
     CDS             complement(4513..5145)
                     /locus_tag="VHN39_19030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019848353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818495.1"
                     /translation="MSEKPRKRLPIRWLSLAELVGIAALVIAGLGYWDTHRERTLTEK
                     ERAAEAQEKRAEAKAGALKLAFLMTGSPEGGGDRLRLASVHPEQVIQTQSVSFPSEVS
                     GDAAETTGNPRIEAGWIEGGLSRAEHARGAKKAHGRLPVGVVTVFIEDGQTRTDRSIY
                     LLGYSAHSRMLRADKIELEGLSLLQRSVGENLQAAVDGVWTRQNPPPAKP"
     gene            complement(5150..5602)
                     /gene="dut"
                     /locus_tag="VHN39_19035"
     CDS             complement(5150..5602)
                     /gene="dut"
                     /locus_tag="VHN39_19035"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004170 - dUTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006226 - dUMP biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0046081 - dUTP catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEX2818496.1"
                     /translation="MNPTVPITRLPHGEGLPLPAYETAQAAGMDLRAAVPDDEPLTLR
                     PGSRFPVPTGLAFALPPGFEGQVRPRSGLAFKHGVTCLNSPGTVDADYRGEVKVILIN
                     HGEEDFVIRRGDRIGQLVIAPVVQAAWAEVDSLDETQRGAGGFGSTGR"
     gene            complement(5613..>6344)
                     /gene="coaBC"
                     /locus_tag="VHN39_19040"
     CDS             complement(5613..>6344)
                     /gene="coaBC"
                     /locus_tag="VHN39_19040"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEX2818497.1"
                     /translation="MACGEYGPGRMAEPAAIFEAVMSALGSGLRPLAGKRALVTAGPT
                     VEAIDPVRMLTNRSSGKQGYAIAGALAALGAEVTLISGPTALATPAGAVRVDVESARE
                     MLAACEAALPADIAVCVAAVADWRPAEIGTRKIKKDGSAAAPIALVENPDILASLSKG
                     KRRPRLVIGFAAETDDLEAHAQAKLARKGCDWIVANDVSVAGTMGGDDNAVALVSQGG
                     IERWERMAKGEVARKLAARIAAEFA"
BASE COUNT          946 a         2273 c         2199 g          926 t
ORIGIN      
        1 gccaggcgga actgaagaag atgctacccg ccaagaagta gcggaccagc gtgcggacgg
       61 cgcggagctt gctcaggccc gtccgcacgc tggtcaaaaa ccggcttgac tcatgcgtta
      121 gtctagactt acggtaagtc atgactaacg ctctagcctt tgcagccctg gccgacccga
      181 cccgacgcga ggtgttcgaa cgccttgcgc gcgggccttt ggccgttggc gatctggcgc
      241 agggcatgcc ggtcagccgg ccggcggttt cgcaacacct gaaagtcttg aaggaggccg
      301 gcctggtgac cgatcggccg gacgggacgc gccgcgtcta tcagatcgac ccccagggtc
      361 ttggccagat ccgcgcctgg ctcgatcgct tctgggatgt cgccctcgac gccttcaagg
      421 ccgaggtcga gcgcgcggcc aacgaaacag ccgacaaagg agagggacag ccgtgagcca
      481 gaccatcacc cctgccgcga tcaagaagac cctgaccgtc cctgcgacgc cggaaaaggc
      541 gttcgagatt ttcaccgacg gctgtggccg gtggtggccg agcacccact ccatcggtga
      601 cgccccgttc aagaccgcga ccatcgaacc gcgcgtcggc gggcgctggt acagcctgac
      661 cgaggacggg gtggagcacg aatggggcga cgtcctgacc tgggagccgc cggcgcgcct
      721 ggtgctggcc tggcggctca acggcgaatt cacctacgat cccaccctcc tgaccgaagt
      781 ggaagtccgc ttcgccgccc tgacggacgg ccagacccgc gtggatttcg agcaccgcgg
      841 gctcgagcgg ctgggcgccg gcgccgcggc cgaccagatc cgcaccggca tggacggcgg
      901 ctgggccacg atcctcgata gcttcaaggc cgtggtcggc ggctgaaacc cgacccgcac
      961 atccaagaga agggagactt cgctatgtcc gaacccatcg tcattcacgg cattccgggc
     1021 agcccctatg tccgcaagcc cctgctggtc tgcgaggaga agggcgcgcc ctatcgcctc
     1081 gccgccatgg ccttcgggac cggcgccaac aaggcgcccg agtacctcgc gcgaaatccg
     1141 ttcggccgca tcccgacgat cgagcatggc gacttcgtcc tttacgaggc ccaggcgatc
     1201 gcccgctaca tcgatcaggt gttcgacggg cccagcctga cgcccgcaga cccgcgcgct
     1261 caggcgcgca tgaaccaggt gatgaacatc gtcgactggt acgtcatgcc ttcgatcagc
     1321 gccggcatcg gcttcaaccg ggtggtcaaa ccgaagttcg gcatgccggc ggacgaggag
     1381 gcggtggaaa aggccctgcc catggcccgc acctgcgtcg cggccctgga ggaaatcctc
     1441 ggcgggaagt cctacttcgc cggcgacgcg gtctcgctgg ccgacctctt cgcctatggc
     1501 cacttcgagt tcctgggcca gacaccggag ggcgccgaca tgctggcggg atctcccctg
     1561 ctgggctgga tggagcggat ggccgcacgt ccaagcgtcc agaacaccac ctgggagcgc
     1621 ctggccgaaa tggcggccgc ctaagcccgg ccaagctttg tcgttgaccc ggcaggcgtg
     1681 cgcgcgagat tagagtctcg cctcgcgcga cctgccggag gaacgccgct gcccagcacc
     1741 acgacaaatg gcgccctgat caagatcgcc gtggccggcg cgctcggacg gatgggccgg
     1801 ttcgtgtccg acgccgtcga ggccgaggcc gggcttacgc tggcggcgcg cttcggccgt
     1861 cccggcggcc tgaccggcga ggtgctgatg ggccaggagg cggcgctgga cgccgccgac
     1921 gtggtcatcg acttcaccac ccctgcggtc tcggcggcgc tggccggcgc ctgcgcggcg
     1981 cgcggcgggc cggccgtggt gatcggctcc accgggttcg acgacgccca gctgacggcc
     2041 atcgaagcgg cgtcggccaa ggttgcgatc gtgcgggccg ccaacttctc tctcggcgtc
     2101 aacctgctga tgggcttcgt tgagcaggcg gcccgccagc tcggccccga ggcctatgac
     2161 gtcgagatct tcgaggcgca ccatcggcgc aaggtggacg ccccctccgg cacagccctg
     2221 atgctgggcg aggcggccgc cgccgggcgc ggcgtcgacc tttccaaggt cgccaggcgg
     2281 gcccgcgatg ggatcaccgg cgcccggcct cagggcgaga tcggcttttc ggtaatgcgc
     2341 ggcggcggga tcgtcggcga gcacagcgtc accttcgccg gtgatgacga aatcctgacc
     2401 ctgtcgcact cggcccgagg ccgaggcctc ttcgcaaagg gcgccgtggt cgccgcgcga
     2461 tgggtcgccg gccggccacc gggcctctac gacatgcgcg acgtcctggg cttctccggc
     2521 aagggctgag gatggaagac ctcctcaagc gcgacgccac cgaacagctc gccgcgctga
     2581 acgccaaacg ggtgtcggcg gtggagctct tgaagggcga gctggcctgg cgcgagcaga
     2641 cccatggcgc cctcaacgcc gtggtcgccg tgagcctgga gcgggcgctg gagcacgccg
     2701 ccgccatcga cgacctgcgg gcccgcgggg agcccctggg ccttctggcc ggcctgccga
     2761 tgacggtgaa ggacaccctc gacgtagtgg gcctgcccgc ctcgtcgggc ctcaggcgcc
     2821 tgaaggcgcg ccaggccgag gacgcctcgg cggtgaaggc cgccaagcac gcgggcgtcg
     2881 tcatctgggg taagaccaac accccggtga tggccggcga ctggcagacc ttcaacgccc
     2941 tctacgggac caccaacaac ccgtgggacc tcgaccggac caccggcggc tcctccggag
     3001 gggcggccgc ggcgctggcg gccggcgtca cggcgctgga gatcggctcg gacatcggcg
     3061 gatccctgcg cgttccggcc agcttttgcg gcgtctacag ccacaagccc acctggggcc
     3121 tggtcgacca gcatggccat gtgccgccgt cccccggatc ctggagcgag cgcgacctga
     3181 acgtgatcgg ccccatggcc cgttcggcgc gggacctgcg cctgctgatg tccgtgctgg
     3241 aggacgggat gctgacgccc aaggcgccgc cggccgagct caaggaggcc aggatcgggc
     3301 tctggctgga cgagccgagc ttcccgctcg accgggaggt ccgcgccgcc atcgagagct
     3361 tcgccgccga actgagcgcc gcgggcgtcg aggtcacccc gatcgcctcg ccgctgcaca
     3421 tgccgaccct gatgggcgcc taccgcaccc tccttggcgc catcatcggc gaggacatgc
     3481 ccgacaaggc gatccgcgca ctgacccgca tgcgcggcct cgcccgctgg caagtggacc
     3541 gcggcgccga ggcggcctcc aacgcggcca tgaccctggc ctataccgcc actcaccgcg
     3601 agtggatggc cgccgacgct gtccgggccc gcctgcgcca cgagatcggc gaggtcttca
     3661 accgtttcga cgcgatcctc gcgcccatcg ccccggtcgc ggccttcccg cacgatcacc
     3721 ggccgttcac gcgccgcaag ctcaccgcct ccgacggccg gaccatgcct tacggctcga
     3781 tgctcaactg gatttcgctg gccaccgccc tgcacctgcc cgcgaccgcg atccccgccg
     3841 ggcccacggt ctctggcctg cccgtcggcg tgcaactgat cgggcccctg catggggacg
     3901 cccgcatgct ggcgctggcg caggccatcg aggaaaacgt ccgcggattc atccccccgg
     3961 agatggcgcg ctagggcgca agcctggcgt agagccactg gtcccagtag cggcccttcc
     4021 agatggcgta gtcccgcagc accgcctcgc gcacgaaccc gtgccgctcc aacagggcgg
     4081 cggaggccgc attgccgggc gtgaccatcg cctcgatacg gcggaggccg agcgtcccga
     4141 agccgtaggc gaggaccgcc ggcagcacct cggccatcac gccctgtcgc cagcgcggcc
     4201 ggacgacgtc ataggcgatc tcgccgcgcg atccgcgctc gcggaccagg ctgttgaagc
     4261 cggccgtacc cacgaaggcg ccggtccggt cgcggatcgc ccagcggacg ccgtcgcccg
     4321 acgtggccag gccggtcgcc caggcgatga tggcttcggc gcccgcaaga tcggtgaggg
     4381 ccgcgatatc catatgttcg acggtgcgcg ggtcggagag atgggccagc aggtcggcgc
     4441 cgtcgccaga cgccagcggc gaaaagacat agttggccgt ggcgaggctc acgtcggcga
     4501 agcgtggatc gctcacggtt tggcgggcgg tgggttctgg cgggtccaga caccgtcgac
     4561 ggcggcctgc aggttttctc cgacgctgcg ctggagcagg gacaggccct cgagctcgat
     4621 cttgtcggcc cgcagcatcc gggaatgggc gctgtagccc agcagataga tcgaccggtc
     4681 ggtcctggtc tgaccgtcct cgatgaacac cgtgacgacg cccaccggaa gccgcccgtg
     4741 cgccttcttc gcgccccggg cgtgttcggc tctggagaga cctccctcga tccagccggc
     4801 ttcgatgcga ggattaccgg tggtctccgc ggcgtcgccg ctcacctcac tcgggaagct
     4861 caccgactgg gtctggatca cctgctcggg gtggacgctc gccagccgca gccggtcgcc
     4921 gccgccctcc ggcgagccgg tcatcaggaa ggcgagcttc agagccccgg ccttggcttc
     4981 ggccctcttc tcctgcgcct cggcggcgcg ttccttctcg gtgagggtgc gttcgcggtg
     5041 cgtgtcccag tagccgaggc ccgcgatcac cagggccgcg atgcccacca gctcggccaa
     5101 cgacagccag cggatcggca ggcgtttcct gggtttctcg ctcatcgcat caacgcccgg
     5161 tggacccgaa gccgccggcg ccgcgctggg tttcgtcgag gctgtcgacc tccgcccagg
     5221 cggcctgaac cacaggggcg atcaccagct ggccgatgcg gtcgccccgg cggatcacga
     5281 agtcttcctc gccatggttg atcaggatca ccttcacctc gccgcgatag tcggcgtcga
     5341 cggtgcctgg cgaattgagg caggtcaccc cgtgcttgaa ggcgagtccc gagcgcggcc
     5401 gcacctggcc ctcgaacccc ggcggcagag cgaaggcgag gcccgtcggc acgggaaacc
     5461 gcgagccggg ccggagcgtc aggggctcgt cgtccggcac ggcggcgcgc aggtccatgc
     5521 cggcggcctg ggcggtctca taggccggca gcggcagccc ctcgccgtgc ggcaggcggg
     5581 tgatcgggac ggttgggttc acgtcaggtc cctcaagcga attcggcggc gatacgcgca
     5641 gcgagcttac gggcgacctc gcccttggcc atccgctccc atcgctcgat tccgccctgg
     5701 ctgacgaggg ccacggcgtt gtcgtcgccg cccatggttc cggccacgct gacatcgttg
     5761 gcgacgatcc agtcgcaacc cttccgggcc agcttggcct gggcgtgggc ctccaggtcg
     5821 tcggtctcgg ctgcgaagcc tatgacgagg cgcgggcggc gtttaccctt cgacaggctc
     5881 gcaagtatgt cggggttttc gacgagggcg atgggcgccg cggcgctccc gtccttcttg
     5941 atcttccggg tcccgatctc ggccggccgc cagtcggcca cggcggcgac gcaaacggcg
     6001 atgtcggccg gaagcgccgc ctcgcaggcc gccagcatct cgcgcgcgct ttccacatcc
     6061 acccggacgg cgccggcggg cgtggcgagc gccgtggggc cgctgatcag ggtcacctct
     6121 gcgccgaggg ccgcgagcgc gccggcgatg gcgtagccct gcttgccgga ggagcggttg
     6181 gtcagcatcc gcaccggatc gatggcctcg accgtggggc cggcggtgac cagggcgcgc
     6241 ttgccggcca gcgggcggag gccggaaccg agggccgaca tgaccgcctc gaaaatcgcc
     6301 gcgggctcgg ccatgcggcc cgggccatat tcgccgcagg ccat
//
LOCUS       DATAJL010001007         3249 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_114119,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001007 DATAJL010000000
VERSION     DATAJL010001007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114119"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..97)
                     /locus_tag="VHN39_19045"
     CDS             complement(<1..97)
                     /locus_tag="VHN39_19045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002515903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEX2818498.1"
                     /translation="MDRAQKQEAIETLKGVFDGAGAVVVTHYMGLT"
     gene            507..1598
                     /locus_tag="VHN39_19050"
     CDS             507..1598
                     /locus_tag="VHN39_19050"
                     /inference="COORDINATES: protein motif:HMM:NF023015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX2818499.1"
                     /translation="MGKLSDRYPFPAPEGSQWPVPQDFDVVFNWDYPDGRETMMGLYR
                     KGVEMQWDAETRIDWTQELDEENPEQLPEEMLPISGMAEYERMSAKEKGTVRRHFQGW
                     QISQFMQGEQGALICAAKIVTQVPDMDSKFYASTQVIDEARHVESYKRLLEKFGVAYP
                     MTPPLQELIDQVLRDSRWDMTYLGMQVVIEGLALAAFQQIRDHAQNPLAAAVNAYVMQ
                     DESRHVAFGRLALRDFYPQLTQAERNEREEFLLEACYLMRDRFDAVEVWRTLGLDPAR
                     CAEHMYDSGFMEMFRSSLFTRIVPIVKDIGLWGDTIRNGYEKMGIIGFAQTDVQALQD
                     ADDTIAKEHDARRDYVTSVIQRAQALESA"
     gene            complement(1612..2121)
                     /locus_tag="VHN39_19055"
     CDS             complement(1612..2121)
                     /locus_tag="VHN39_19055"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004624675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2818500.1"
                     /translation="MVDVTLEPVGRGKRETLENLFQLYTHDFSDFWAGREDGELQEDG
                     RFPQYIYLDSYWTDADRTPLLVRADGHVAGFALINTFSHSGLPIDFAVAEFFVARKHR
                     RAGVGFTAATEIIRARPGQWEMAVARLNTAALPFWRRVAAAIAGPAVEEIDRDDDLWN
                     GPIVRVRAG"
     gene            2243..>3249
                     /locus_tag="VHN39_19060"
     CDS             2243..>3249
                     /locus_tag="VHN39_19060"
                     /inference="COORDINATES: protein motif:HMM:NF014790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818501.1"
                     /translation="MRVDWSADELAFRDEVRAFLDAELTPQMRQVTRRMTSVYAPHDL
                     SMAWQAILHARGWAAPAWPIEHGGCGWTSAQRYIFASELAAADAPPLSPMGIGMCAPV
                     LIGHGTDEQKAHYLPRILTGEHFWCQGYSEPGSGSDLASLQMSAVEDGDDFVCNGHKL
                     WTTHANLANWMFCLVRTSQEAIRQQGITFLLIDMTSPGVEVRPILMLSGEHIQNDVFF
                     TDVRVPRANAVGRVGEGWTVAKYLMEFERGGGVIAPGLKARLARIRAMAAAEGLMEAR
                     GYVARVAAIGIEIEALEAVELQILANLSQGDAPGARSSMMKTVGTEISQRLTELALEA
                     AG"
BASE COUNT          567 a         1062 c         1125 g          495 t
ORIGIN      
        1 cagtcagacc catgtagtgg gtcacgacca cggcgccggc gccgtcgaac acgcccttga
       61 gcgtctcgat ggcttcctgc ttttgagcgc ggtccattgc ggtctccata ctcaggttcg
      121 acgcgcgcga atgtgcgcac gccgcttact cacctgtccg aaaggaaagc cgaaaggatc
      181 gcgcccatcg cagggcgatg gccggaaacc tcatcttccc gtctccctgc ggctgaaggc
      241 gggcccgcct tcacgttccg gccccgggtg acccccggga ctacgcagtt cttggacagg
      301 atggagcgcg gtcgtctgcg ccccgtccat cgcagcccga aggcggcgaa aactctaaga
      361 gcgcggggct ttacaggaag accgggcgaa actcaaccgc cgggtcggtg acaacggcat
      421 ttgtctaccg ccgccttttg ccgtcagatg gcaaggcgca cacgaggcca gcattcagac
      481 cggccgggcg caagggagtt tgcgccatgg gtaagctgag cgaccgctat ccgttccccg
      541 cgcctgaggg cagccagtgg ccggtgccgc aggatttcga cgtggtcttc aactgggact
      601 accccgacgg ccgcgagacc atgatgggcc tctaccgcaa gggcgtggag atgcagtggg
      661 acgcggagac gcggatcgac tggacccagg agctggacga ggagaacccc gagcaattgc
      721 ccgaggagat gctgccgatc tccggaatgg cggaatacga gaggatgtcg gccaaggaga
      781 agggcactgt gcgccgccac ttccagggct ggcagatcag ccagtttatg cagggcgaac
      841 agggcgcgct gatctgcgcc gccaagatcg tcacccaggt gccggacatg gactccaagt
      901 tctacgcctc gacccaggtg atcgacgagg cgcgccacgt ggagagctac aagcggctgc
      961 ttgagaagtt cggcgtcgcc tatccgatga ccccgccgct gcaggagctg atcgaccagg
     1021 tgctgcgcga cagccgctgg gacatgacct acctgggcat gcaggtggtc atcgagggcc
     1081 tggccctggc cgctttccag cagatccgcg accacgccca gaacccgctg gccgccgccg
     1141 tcaatgccta tgtcatgcag gacgaaagcc gccacgtggc gttcgggcgt ctggcgctgc
     1201 gcgacttcta tccgcagctg acccaggccg agcgcaacga gcgcgaggag ttcctgctgg
     1261 aggcctgtta cctcatgcgc gaccggttcg acgcggtgga ggtctggagg accctgggcc
     1321 tcgatcccgc ccgctgcgcc gagcacatgt atgactcggg cttcatggag atgttccgct
     1381 cctcgctgtt cacccgcatc gtgccgatcg tgaaggatat cggcctgtgg ggcgacacga
     1441 tccgcaacgg ctacgagaag atgggcatca tcggcttcgc ccagaccgac gtgcaggccc
     1501 tgcaggacgc cgacgacacc atcgccaagg agcacgacgc gcggcgcgac tacgtcacga
     1561 gcgtcatcca gcgggcccag gcgctggaga gcgcctgacc cccgggcggc gtcagccggc
     1621 ccgtacgcgc acgatagggc cgttccacag gtcgtcgtcg cggtcgatct cctcaaccgc
     1681 cgggccggcg atggcggcgg ccacgcggcg ccagaacggc agagcggcgg tgttaaggcg
     1741 cgcgacggcc atctcccact gtcccggccg cgcacgaatg atctctgtcg ccgcggtaaa
     1801 gccgacgccc gcgcggcgat gcttgcgggc cacgaagaac tccgcgacag cgaagtcgat
     1861 cggcaggcct gaatgggaga aggtgttgat caacgcgaaa ccggcgacgt ggccgtcggc
     1921 gcggaccagg agcggggtgc ggtccgcgtc ggtccagtag ctgtcgaggt agatgtactg
     1981 cgggaaacgc ccgtcctcct gcaactcgcc gtcctcgcgg ccggcccaga aatcagagaa
     2041 gtcgtgggtg tagagctgga aaagattctc cagggtctcg cgcttgccgc ggccaacggg
     2101 ttcgagggtg acatcgacca tggcgggcct ccgggcgatc gcgtggcgtc gctttgaccg
     2161 caaaccgagc cctggagtcc agaggacgcg cgtcgcatca ccgcctatag acgtcatcgc
     2221 ggcgcaattc ggaggctggc ggatgcgggt ggactggagc gcggacgaac tggccttccg
     2281 cgacgaggtg cgggcgtttc tggatgccga gctgacgccc cagatgcgcc aggtgacgcg
     2341 gcgcatgacc agcgtctacg cgccccacga cctcagcatg gcctggcagg cgatcctgca
     2401 cgcccgcggc tgggcggcgc cggcctggcc catcgagcat ggcggctgcg gctggacctc
     2461 ggcccagcgc tacatcttcg ccagcgagct cgccgccgcc gatgcgccgc cgctgtcgcc
     2521 catggggatc ggcatgtgcg ccccggtgct gatcgggcac gggacggacg agcagaaggc
     2581 ccattacctg ccgcgcatcc tcacaggcga gcatttctgg tgccaaggct actcggagcc
     2641 ggggtcgggc tccgacctcg cctcgctgca gatgagcgcc gtcgaggacg gggacgactt
     2701 cgtctgcaac ggccacaagc tgtggaccac ccacgccaac ctcgccaact ggatgttctg
     2761 cctggtccgg acctctcaag aggcgatccg acagcagggc atcaccttcc tgctgatcga
     2821 catgacaagc ccgggcgtcg aggttcggcc gatcctgatg ctgtcgggcg agcacatcca
     2881 gaacgacgtc ttcttcaccg atgtgcgcgt gcccagggcc aatgcggtgg gtcgcgtcgg
     2941 cgagggctgg acggtcgcca agtacctgat ggagttcgag cgcggcggcg gggtgatcgc
     3001 gcccgggctg aaggcgcggc tggcgcgcat ccgcgccatg gcggcggcgg aaggcctgat
     3061 ggaagcacgg ggctatgtgg cgcgcgtggc cgccatcggg atagagatcg aggccctgga
     3121 ggctgtggag ctgcagatcc tggccaacct cagccagggt gatgcgcccg gcgcccgctc
     3181 gtcgatgatg aagacggtcg gcaccgagat cagccagcgg ctgacggaac tggcgctgga
     3241 ggcggccgg
//
LOCUS       DATAJL010001008         5747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_114121,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001008 DATAJL010000000
VERSION     DATAJL010001008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 5747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5747
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114121"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1216)
                     /locus_tag="VHN39_19065"
     CDS             complement(<1..1216)
                     /locus_tag="VHN39_19065"
                     /inference="COORDINATES: protein motif:HMM:TIGR00976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEX2818502.1"
                     /translation="MRTSLLALALLAWPLAGLRAQPPAPQPPAITAEDERLYEVHRDV
                     TVRTPDGATICALVIRPRTTARVPTILEFTIYADARSMASEARQAAAHGYAGVVGMTR
                     GKGCSPDAPVPYEHDGADADTLIDWIAVQPWSDGKVGMYGGSYSAFTAWAAAKHKPKA
                     LKAIMVGAPEGPTIDTPGENGVVWNFIYPWPFYTTDNKALDDATYGNSARWTRLSHDW
                     YVSGRAYRDLDKVDGTPNPFWDRWISHETFDAYWRAMTPSGADFAQIDIPVLQTAGYF
                     LGGPAASTRYFQQHYRYNPKAEDYLLVGPWDHFQAQRGARAGQDTVVGYKMDPAAVMD
                     LVALRFQWFDYAMKGGARPAILKDRVNYQVTGANVWKHAPSLEAMATGKLRLYLSAER
                     KGATWGLSRTPGA"
     gene            1317..2456
                     /locus_tag="VHN39_19070"
     CDS             1317..2456
                     /locus_tag="VHN39_19070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isobutyryl-CoA dehydrogenase"
                     /protein_id="HEX2818503.1"
                     /translation="MDFNLTENQRAIEEAARAFAAAELAPHSARWDAESHFPVDVLRK
                     AAELGFAGLYVQEDVGGSALSRLDASIVFEQLSYGDVSTAAFISIHNMASWMIDRFGS
                     DELRGKYLPRLTTMELIASYCLTEPGSGSDAAALSTTAKQDGDHYVLNGSKAFISGAG
                     TSDIYVVMVRTGGPGAKGVSAVVVEKGTPGLSFGAQEKKMGWKSQPTAQVNFDDCRVP
                     VENRIGAAGDGFRFAMAGLDGGRINIASCSLGGAGLALDTARTHLETRKQFGNPLKDF
                     QGLQWRLADMATDLDAARLMVRRAAHALDNRDPKATQYCAMAKRLATDTGFEVANQAL
                     QLHGGYGYLQDFPLERIVRDLRVHQILEGTNEIMRVITARELFRQ"
     gene            2453..3505
                     /locus_tag="VHN39_19075"
     CDS             2453..3505
                     /locus_tag="VHN39_19075"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HEX2818504.1"
                     /translation="MSDEAEVLTRVEGKVGRITLNRPQALHALTTNMCRLMIEALLAW
                     IDNPAVRLVLIDHAGERGFCAGGDIRMLAESGAGDGRLAREFFFTEYRLNTLLHDYPK
                     PLVAIMDGITMGGGVGLSRPCRYRVATERTTFAMPETGIGLFPDVGGGWYLSRMSDHI
                     GLWLALTGARIRAADCELTGLATDYVESAQLPALKAAILAEPVAIETILTEFEGDAGR
                     PALAAHQDEIARLFAGDSVEAIVAALQATDSDWARDQLTTLRTKSPQTMKVAFQQLRL
                     GGTMTRFSDNMAMEYRIGARVVQRHDFLEGVRAVIVDKDNVPKWNPPTLETVTEALIE
                     GIFAPLPSVEEWTPLP"
     gene            3569..4324
                     /locus_tag="VHN39_19080"
     CDS             3569..4324
                     /locus_tag="VHN39_19080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2818505.1"
                     /translation="MKSKLFLAAALAVIVTAGGAYAKPDANQMAAVADKARPEADSKR
                     DADRKPAEMLEFAGVKQGQTVVDLIPGGGYFTRIFSKAVGAKGTVYAVGGPPRPADPS
                     KPAPPPPAQDTIAADANYSNVKSIHAPLAGGLSIPTKADLVWTAQNYHDVKNVAGIDM
                     LAFDKAIFDSLKPGGVFVVLDHAAAPGAMVTNTLHRIDPAVVKKEVEAAGFKFEGESK
                     VLASAADDHTKAVFDPSLRGHTDQFIYKFRKPK"
     gene            4347..5246
                     /gene="mmsB"
                     /locus_tag="VHN39_19085"
     CDS             4347..5246
                     /gene="mmsB"
                     /locus_tag="VHN39_19085"
                     /EC_number="1.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012522231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008442 - 3-hydroxyisobutyrate
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0006574 - valine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyisobutyrate dehydrogenase"
                     /protein_id="HEX2818506.1"
                     /translation="MTRIAFIGLGNMGGGMAANQAKAGHDVHAFDLSATALEKAVAAG
                     CQAAGSAAAAVKDAEAVITMLPAGQHVRAIYGGEILSNAKPGALLIDCSTIDVESARA
                     VAAQAKGAGFRFADAPVSGGQAGAEAGTLAFMVGCDEADFAAVEGVIGPMSRITIRAG
                     DHGAGQAAKICNNMVLGATMIATCEAFALAEKLGLEPERFFEIASKSSGQSWSLTSYC
                     PWPGPVPTAPSNRNYEGGFATAMMLKDLKLAQEAAAKAGAATPLGAQAEGLYALFDRL
                     GGGGKDFSAILELFRGHAPGQDA"
     gene            5593..>5747
                     /locus_tag="VHN39_19090"
     CDS             5593..>5747
                     /locus_tag="VHN39_19090"
                     /EC_number="2.3.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287076.1"
                     /note="catalyzes the formation of 5-aminolevulinate from
                     succinyl-CoA and glycine; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-aminolevulinate synthase"
                     /protein_id="HEX2818507.1"
                     /translation="MDYRSAFETALEKVRSEGRYRVFADLKRHRGAFPRATWTRGDGS
                     ESDVVVW"
BASE COUNT          961 a         1939 c         1949 g          898 t
ORIGIN      
        1 gagcgccggg ggtccggctc aggccccagg tcgcaccctt gcgctcggcg ctgaggtaga
       61 gccgcagctt cccggtcgcc atggcttcca gcgacggcgc gtgcttccag acgttggcgc
      121 cggtgacctg gtagttcacg cggtccttga ggatcgccgg cctggcgccg cccttcatgg
      181 cgtagtcgaa ccactggaag cgcagggcga cgaggtccat cacggccgcc ggatccatct
      241 tgtaaccaac gaccgtgtct tgcccggcgc gagcgccgcg ctgggcctgg aaatggtccc
      301 agggccccac gagcagatag tcctcggcct tggggttgta gcgatagtgt tgctggaaat
      361 accgcgtgct ggccgcgggg ccgccgagga agtagccggc ggtctgcagc acagggatgt
      421 cgatctgggc gaagtccgcg ccgctagggg tcatggcgcg ccagtaggcg tcgaaggtct
      481 cgtgcgaaat ccagcggtcc cagaaggggt tcggcgtccc atcgaccttg tccaggtcgc
      541 gataagcccg gccgctgacg taccaatcgt ggctgagccg cgtccagcgg gcgctgttcc
      601 cgtaggtcgc gtcatcaagg gctttgttgt cggtggtgta gaacggccaa gggtagatga
      661 aattccacac cacgccgttc tcgccgggcg tgtcgatggt tggcccttcc ggcgcgccga
      721 ccatgatcgc tttcaaggcc ttgggcttgt gcttggccgc ggcccaggcc gtgaaggcgc
      781 tgtagctgcc gccatacata ccgaccttgc cgtcgctcca gggctggacc gcgatccagt
      841 cgatcaaggt gtcggcgtcg gcgccgtcgt gctcataggg gaccggcgca tccggactgc
      901 agcccttgcc gcgggtcatg ccaaccaccc cggcatagcc atgcgccgcc gcctggcggg
      961 cctcggacgc catcgagcgc gcgtcggcgt agatggtgaa ctccaggatc gtcgggacgc
     1021 gggccgtcgt ccgaggccgg atcaccaggg cgcagatcgt cgcgccgtcc ggcgtgcgga
     1081 ccgtgacgtc gcgatggact tcatagaggc gctcgtcctc agcggtgatc gcgggtggct
     1141 ggggcgcggg cggctgggcg cgaaggccgg ccagcggcca tgccaggagc gcgagggcaa
     1201 ggagcgaggt tcgcatgggc gcgaccttca gcggccacgc cagttgacgc aacggaattc
     1261 cgtccgcacc cacgcggcga ttgacagcgc tggcgaccgg cgcgagtcac cagcccatgg
     1321 atttcaacct caccgaaaac cagcgggcca tcgaggaggc cgcgcgcgcc ttcgccgccg
     1381 ccgagttggc gccccattcc gcccgctggg acgccgagag ccatttcccc gtcgatgtgc
     1441 tgaggaaggc cgccgagctg gggttcgccg gcctctatgt gcaggaggac gtgggcggct
     1501 cggcgctcag ccggctcgac gcttccattg tttttgagca gctcagctac ggcgacgtct
     1561 ccaccgcagc cttcatctcg atccacaaca tggcgagttg gatgattgac cggttcgggt
     1621 cggacgagct gcgcggcaag tatctgccgc gcctgaccac catggagctg atcgcctcct
     1681 actgcctgac cgaaccgggc tccggctccg acgccgcggc gctatcgacc accgcgaagc
     1741 aggacggcga tcactatgtc ctgaacggct ccaaggcctt catctccggc gcggggacct
     1801 cggacatcta cgtcgtcatg gtccgcaccg gcgggccggg ggccaagggg gtctcggccg
     1861 tggtggtgga gaaggggacg ccagggctca gtttcggcgc ccaggagaag aagatgggct
     1921 ggaagtcgca gcccacggcc caggtcaact tcgacgactg tcgtgtgccg gtggaaaacc
     1981 gcatcggggc ggcaggcgac gggttccgct tcgccatggc ggggctcgac ggcgggcgga
     2041 tcaacatcgc ctcctgctcg ctgggcgggg cgggcctggc gctcgacacc gcccggacgc
     2101 acctggagac ccgcaagcag ttcggtaatc cgctgaagga cttccagggc ctgcagtggc
     2161 gcctggcgga catggcgacc gacctggacg cggcgcggct gatggttcgc cgcgcggccc
     2221 atgcgctgga caatcgcgac cccaaggcca cccagtactg cgccatggcc aagcggctcg
     2281 ccaccgacac cggcttcgag gtcgccaacc aggcgctgca actgcatggc ggctatggtt
     2341 atctgcagga cttcccgctg gagcgcatcg tccgcgacct gcgcgtccac cagatcctgg
     2401 agggcaccaa cgagatcatg cgggtgatca cggccaggga gttgttccgg caatgagtga
     2461 cgaggctgaa gtcctgaccc gcgtcgaggg caaggtcgga cggatcacgc tcaatcggcc
     2521 ccaggcgctg catgccctga ccaccaacat gtgccggctg atgatcgagg cgctgctggc
     2581 ctggatcgac aatccggccg tgcggctggt gttgatcgac cacgccgggg agcgcggctt
     2641 ctgcgccggc ggcgacatcc gcatgctggc cgagagcggg gccggcgatg ggcggctggc
     2701 gcgggagttc ttcttcaccg agtaccggct gaacaccctg ctgcacgatt accccaagcc
     2761 cctcgtcgcc atcatggacg ggatcaccat gggcggcggc gtgggcctct cgcggccctg
     2821 ccgttaccgg gtggccaccg agcgcaccac cttcgccatg ccggagaccg ggatcgggct
     2881 gttccccgac gtcggcggcg gctggtacct ttcgcggatg agcgaccaca tcgggctttg
     2941 gctggcgctc accggggcgc ggatcagggc ggcggactgc gaactcaccg gcctggccac
     3001 cgactatgtg gagagcgccc agcttccggc gctgaaggcg gccatcctgg ccgaaccggt
     3061 cgccatcgag accatcctga ccgagttcga gggcgatgcc ggccggccgg cgctggccgc
     3121 ccaccaggac gagatcgcgc ggctcttcgc tggcgacagc gtcgaggcga tcgtcgcggc
     3181 ccttcaggcc accgacagcg actgggcgcg cgaccagctg acgacgctca ggaccaagtc
     3241 gccgcagacc atgaaggtcg ccttccaaca gctccgtctg ggcgggacca tgacccgctt
     3301 ttccgacaac atggccatgg agtaccggat cggcgcgcgg gtggtgcagc ggcacgactt
     3361 cctggagggc gtccgcgcgg tgatcgtcga caaggacaac gtaccgaaat ggaatccgcc
     3421 gaccctggaa acggtcaccg aagcgctcat cgaaggcatt ttcgcgcccc tgccttccgt
     3481 tgaggagtgg acgcccttac cttgaccgcg ggcggccccc ttctttcagt tgaaggaatg
     3541 gaacggaccg ccatcgggag gacgacgaat gaaatccaag ctgttcctgg cggccgcgct
     3601 ggccgtgatc gtgaccgcgg gcggggccta cgccaagccc gacgcgaacc agatggccgc
     3661 ggtggccgac aaggcccgcc cggaagccga tagcaagcgc gacgccgacc gcaagcccgc
     3721 ggaaatgctt gagttcgccg gcgtgaagca aggccagacc gtggtcgatc tgatccccgg
     3781 cggtggctat ttcacccgca tcttctccaa ggccgtgggc gccaagggca cggtctacgc
     3841 cgtcggcggc ccgccgcgcc cggccgatcc gtccaagccc gcgccgccgc cgcccgccca
     3901 ggacaccatc gcggccgacg ccaactattc caacgtgaag tcgatccacg cgccgctggc
     3961 cggcggcctg tcgatcccca ccaaggccga cctggtctgg acggcgcaga actatcacga
     4021 cgtgaagaac gtcgcgggca tcgacatgct ggccttcgac aaggcgatct tcgactcgct
     4081 gaagcccggc ggcgtgttcg tcgtgctgga ccacgccgcg gcgcccgggg cgatggtgac
     4141 caataccctg caccgcatcg atccggcggt ggtgaagaag gaagtggaag ccgccggctt
     4201 caagttcgaa ggcgagagca aggtcctggc cagcgccgcc gacgatcaca ccaaggcggt
     4261 cttcgatccg tccctgagag gccataccga ccagttcatc tataagttcc gcaagcccaa
     4321 gtaagattct gatctaaagg actttcatga cccgtatcgc cttcatcggc cttggcaaca
     4381 tgggcggcgg catggccgcc aatcaagcca aggcgggtca tgatgtccac gccttcgacc
     4441 tgtcggccac cgccctcgag aaggcggtgg ccgcgggctg ccaggcggcc ggatcggccg
     4501 ccgcggcggt gaaggacgcc gaggccgtca tcaccatgtt gccggccggc cagcacgtcc
     4561 gcgccatcta cgggggtgaa atcctgtcca acgccaagcc cggcgccctg ctgatcgact
     4621 gctcgacgat cgacgtggag agcgcccgcg ccgtcgccgc ccaggccaag ggcgcgggct
     4681 tccggttcgc cgacgcgccc gtctccggcg gccaggccgg cgcagaggcc ggcacgctcg
     4741 ccttcatggt cggctgtgac gaagccgatt tcgctgcggt tgagggcgtc attggcccga
     4801 tgtcgcggat caccatccgc gccggcgacc acggcgcggg ccaggcggcc aagatctgca
     4861 acaacatggt gctgggcgcg acgatgatcg cgacctgcga ggctttcgcg ctcgccgaaa
     4921 agctcggcct ggaaccggag cggttcttcg agatcgcgtc caagtcctcc ggccagagct
     4981 ggagcctgac cagctactgc ccctggcccg gcccggtgcc gaccgcgccc tccaatcgca
     5041 actatgaagg cggcttcgcc acggcgatga tgctgaagga cctcaagctc gcgcaggaag
     5101 ccgccgccaa ggccggcgcc gcgaccccgc tgggcgccca ggcggagggg ctctacgcgc
     5161 tgttcgaccg actgggcggt ggaggcaagg atttctcggc gatcctggag ttgttccggg
     5221 gccatgcgcc gggccaagac gcctagtgtg ctggatctga agttcgccgc actcagggcc
     5281 acgcgcggag cgaacttcag atccaaagaa gcacactagg agaacgtagg cttcctagtg
     5341 tcctcatcga ttccgaagtt cgtcccgcgc ctgccgcaaa cgcatgcgaa cttcggaatc
     5401 gggacactag acggactcag cctaggtaac cgccgatcac aaattttccg cggtctgtta
     5461 cgaaaggtca tgtatcgcga ccttccgagt tatggacaac cccgcccatc ggcgccaaaa
     5521 ccgaggccgc atcacaggga accggccgcc cgcgcgagca acttcgacgc gggacccggc
     5581 tagaagacgt cgatggatta ccgttccgcc tttgagaccg cccttgagaa ggtccgttcc
     5641 gagggccgtt accgggtgtt cgccgacctg aagcgccatc gcggcgcgtt tccgcgcgcc
     5701 acctggacgc gcggcgacgg ctcggaatcc gatgtggtgg tctggtg
//
LOCUS       DATAJL010001009         1677 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_114359,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001009 DATAJL010000000
VERSION     DATAJL010001009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114359"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..586
                     /locus_tag="VHN39_19095"
     CDS             <1..586
                     /locus_tag="VHN39_19095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2818508.1"
                     /translation="DLKHQAAGGKMGSPPSGFAGLTSRFNLTKPLIAAVNGVAMGGGF
                     EIALACDIIIASEAAVFALPEPRVGLAALAGGLHRLPRAIGTKRAMSMILTARRVSAA
                     EGKDLGFVAEVTAPADLMRVAGEWAKGICELGPMSIRASKEAVYRGLDEPSLEAAIKG
                     QNQYPAVAALYRSEDFVEGPLAFSQKRAPQWKGR"
     gene            complement(588..1400)
                     /locus_tag="VHN39_19100"
     CDS             complement(588..1400)
                     /locus_tag="VHN39_19100"
                     /inference="COORDINATES: protein motif:HMM:NF013882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEX2818509.1"
                     /translation="MKSAVFINLPAAEDRRRSIEASFDAAQTDGWSLHRFEALGPDDV
                     ADVPGALSPAEKACFASHRTALGQHLDGDDHVLIVEDDAVFAPQAFGVLDALLAQRGG
                     WDVIYGDTVFDFNMMVAMAGRRDAMVSRDEYQAVDLAGRPYFAAAAYLVRGSAKRRLH
                     AALSAQAALERAYDVVLRDLCHSGQFKMAVAFPFVTTISSLADGSQIQRREGGVFDPT
                     LNAFRRLMYAARDLDQCRADIDRLRAVADSDTARLTGDIFSIMVSPAFSAER"
     gene            1500..>1677
                     /locus_tag="VHN39_19105"
     CDS             1500..>1677
                     /locus_tag="VHN39_19105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012521670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEX2818510.1"
                     /translation="MDRYDYIIIGAGSAGCVLASRLSEDAGKTVLLLEAGGKDGSLMI
                     KMPAGVGGLIGKAGP"
BASE COUNT          275 a          521 c          633 g          248 t
ORIGIN      
        1 tgacctgaag caccaggcgg ccggcggcaa gatgggcagc ccgccgtcgg ggttcgcggg
       61 gctcacgtcg cggttcaacc tgaccaagcc gttgatcgcg gcggtgaacg gggtggccat
      121 gggcggcggg ttcgagatcg ctctggcctg cgacatcatc atcgcctcgg aggcggcggt
      181 gttcgcgctg ccggagccga gggttggcct ggcggcgctg gccggcggcc tgcaccggct
      241 gccgcgggcc atcgggacca agcgggcgat gagcatgatc ctcaccgcgc ggcgggtctc
      301 ggcggcggag ggcaaggacc tgggcttcgt ggctgaggtg accgcgcccg cggacttgat
      361 gcgtgtggcc ggtgagtggg ccaagggcat ctgcgagctc ggccccatgt cgatccgcgc
      421 ctcgaaggag gcggtctatc gaggtctgga cgagcccagc ctggaggccg cgatcaaggg
      481 gcagaaccag tatccggccg tggccgcgct ctatcgcagc gaggacttcg tggaggggcc
      541 gctggcgttc tcgcagaagc gtgcgccgca gtggaagggg cgctagctca gcgctccgcc
      601 gagaaggccg gcgagaccat gatgctgaag atgtcgccgg tcaggcgcgc ggtgtcgctg
      661 tcggcgacgg cccgcaggcg gtctatgtcg gcgcgacact gatccaggtc gcgggcggcg
      721 tacatcaggc gccgaaaggc gttgagggtc ggatcgaaga cgccgccctc ccggcgctga
      781 atctgggaac cgtcggcgag gctggaaatc gtggtcacga aagggaaggc caccgccatc
      841 ttgaactggc ccgagtggca gaggtcgcgc aggacgacgt cataggcccg ctcgagggcg
      901 gcctgcgccg acagagctgc atgcagccgc cgctttgccg acccgcgcac cagataggcc
      961 gccgctgcga aataggggcg gcccgccagg tcgacggcct gatactcgtc acgtgaaacc
     1021 atggcgtccc tgcggccggc catggcgacc atcatgttga aatcgaagac cgtgtcgccg
     1081 tagatcacat cccagccgcc ccgttgggcg agcagggcgt ccagcacacc gaaagcctgg
     1141 ggcgcgaaga ccgcatcgtc ctcgacgatc aggacgtgat catcgccgtc gaggtgctgg
     1201 ccgagggctg tccggtggct ggcgaaacag gccttctcgg cgggactaag cgcgccgggc
     1261 acatcggcga catcgtccgg ccccagggct tcaaagcggt gcaacgacca gccatccgtc
     1321 tgggcggcgt cgaacgaggc ctcgatgctg cgccggcgat cttcggcggc agggaggttg
     1381 atgaacaccg cagacttcat ggcgcaacgt ctagcacggg ttcgggcctt gccagaacgt
     1441 gacgccggcg tcaggttcgc ggctgagtaa tcatcgttca gggacagcgc gcgtactcca
     1501 tggatcgcta cgactacatc atcatcggcg ccggctcggc cggctgcgtg ctggccagtc
     1561 ggttgagcga ggacgcgggc aagacggtcc tgctgctgga ggcgggtggc aaggacgggt
     1621 cgctgatgat caagatgccg gccggggtcg gcgggctgat cggcaaggcg gggccgc
//
LOCUS       DATAJL010001010         3021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_114473,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001010 DATAJL010000000
VERSION     DATAJL010001010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3021
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114473"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..705)
                     /locus_tag="VHN39_19110"
     CDS             complement(<1..705)
                     /locus_tag="VHN39_19110"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HEX2818511.1"
                     /translation="MPHSHDNGACARQPTPYADLNAVLAHLVEGARALLGDNFVGAYL
                     QGSFAVGDATEFSDCDFIIVTARDLTPEELPAFQALHAGIHDLPYAYWRTGLEGSYVP
                     AAILPRWSTEPRDPPGEPRGPDWGDPGMPGSPAKAYPFWYLDHGSKALVRSEHDNSQV
                     VRWCLREKGVVLAGPPPKALIDPVPPAALRAEVRQTMDLVIKLELRPMELVAWQAFWV
                     GLFCRMLHTLATGAVWS"
     gene            complement(898..1242)
                     /locus_tag="VHN39_19115"
     CDS             complement(898..1242)
                     /locus_tag="VHN39_19115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517087.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HEX2818512.1"
                     /translation="MTTIYGIKACDTMQKARAWLADHGVAYGFHDYNTLGIDRARLEG
                     WARQVGWEVLLNRSGTTFRKLPDADRADLTEAKAIALMLTQPSMIKRPVLEAGSGLLV
                     GFKPEIYAARFG"
     gene            complement(1255..1743)
                     /locus_tag="VHN39_19120"
     CDS             complement(1255..1743)
                     /locus_tag="VHN39_19120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818513.1"
                     /translation="MILGLSVGAYTTLHVIISIVAILSGLVVLLAMDGNRRLPALTAL
                     FLATTVLTSVGGFFFHSKMIGPPHIVGVISLVDLAIALAALYLGKLAGAWRPVYVITA
                     TIALYLNFFVLVVQAFAKVPALNALAPKGTEPPFVAAQGATLVVFVILGYLALRKYRP
                     TS"
     gene            complement(1822..2178)
                     /locus_tag="VHN39_19125"
     CDS             complement(1822..2178)
                     /locus_tag="VHN39_19125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818514.1"
                     /translation="MEKAKALADKVALAPFTVTLNHVESWKGDPHPLVLLGDEGVIGV
                     ELLHTAIHKALVAGTMAPRREPQIWPHVSLLWDKALVPKEFVEPIGWMATEFVLLDSV
                     FGEGRHEVLGRWPLLK"
     gene            2463..>3021
                     /locus_tag="VHN39_19130"
     CDS             2463..>3021
                     /locus_tag="VHN39_19130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818515.1"
                     /translation="MNCRLLPLALLATVLAVSTALPAAAQTSPASVARGYKAPRNAFG
                     QPDMSGVWSNATITRLERDPKYGERLLLTPDEAKTIEGASDQRNARLRANTDTSNKDP
                     DKLPECQSGATGAACGYNAFWTDPGTRLVRIGGEARTSILTAPANGRLPGRPAAPAAS
                     GPARARPQLGGNFDNPENRALGERCI"
BASE COUNT          519 a         1066 c         1003 g          433 t
ORIGIN      
        1 cgaccagacc gcgccggtcg ccagcgtgtg cagcatgcgg cagaagagcc cgacccagaa
       61 tgcctgccag gccaccagct ccatcggccg cagctcgagc ttaatcacca agtccatggt
      121 ctggcgcacc tcggcccgca gcgccgccgg cggcacggga tcgatcaacg ccttgggcgg
      181 tgggcccgcc agcaccacgc ccttctcgcg cagacaccac cggaccacct ggctgttgtc
      241 gtgctccgag cgcaccaggg ccttcgaccc gtggtccagg taccagaacg gataggcctt
      301 ggcgggactg ccgggcatgc cgggatcgcc ccagtccggc cctcgcggct cgcccggcgg
      361 gtcgcgtggc tccgtcgacc aacgcggcag gatcgccgcc gggacgtaag agccctcgag
      421 cccggtccgc caataggcat agggcagatc gtggatgccg gcgtgcagag cctggaaggc
      481 tggcagctcc tccggcgtca ggtcgcgggc cgtgacgatt atgaagtcgc agtcgctgaa
      541 ttcggtggcg tcccccaccg cgaaggagcc ctgcagatag gctccgacga aattgtcgcc
      601 gagcagcgcg cgcgcgccct ccaccagatg ggcgaggacg gcgttcaggt cagcgtaggg
      661 cgtgggttgg cgcgcgcagg cgccgttgtc gtgggaatgg ggcatgagag catccgttgg
      721 aatgagtggt cgccgcctcg cgccccatat ctcggtaaga gggcgcggac ggacggtgag
      781 caggcttcgg cgggcgtgac gcccggcctg cctacggcct cacgcggcgg atgctgatca
      841 tgggccggcg gcctccaacg aagcggcgaa aatagcgatg gcgccggcgg cgcgcaacta
      901 gccgaaccgt gcggcgtaga tctccggctt gaaccccacc agtaaaccgc tcccggcctc
      961 cagcaccggc cgcttgatca tcgagggctg ggtcagcatc agggcaatgg ccttggcctc
     1021 ggtcaggtcg gccctgtcgg cgtccggtag cttgcggaag gtcgtgcccg agcggttgag
     1081 cagcacctcc cagcccacct gccgcgccca gccttcaagc cgggcccggt cgatccccaa
     1141 ggtgttgtag tcgtgaaacc cgtaggccac gccgtgatcg gccagccagg cgcgggcctt
     1201 ctgcatcgtg tcgcaggcct tgatgccgta gatcgtcgtc atgcttgtcc ggtgtcagga
     1261 ggtcggccgg tactttcgca gggccaggta gcccaggatc acgaatacca cgagcgtcgc
     1321 cccctgggcg gcgacgaagg gcggctccgt gcccttcggc gccagcgcat tcaaggccgg
     1381 aaccttggcg aaggcctgca ccaccaggac gaagaaattc aggtagagcg cgatcgtcgc
     1441 ggtgatcaca tagaccggcc gccaggcgcc tgcgagcttg cccaggtaga gcgccgcaag
     1501 cgctatcgcc aggtcgacca gagagatcac gccgacgatg tgcggcggcc cgatcatctt
     1561 ggaatggaaa aagaagccgc caacgctggt cagaacggtg gtggccagga agagcgccgt
     1621 cagcgccggt aggcgacggt tgccgtccat ggccagaagc acaacgaggc cggacagaat
     1681 ggcgacgatg ctgatgatga catggagcgt cgtgtacgcc ccgaccgaca gtcccagaat
     1741 catgtcccgc tcccgcgttt ccccgccttc taagaggcag ggcggaccct aacagcggcc
     1801 gggccgggct cacagtcacg cttacttcaa gagcggccag cgccccagga cctcgtggcg
     1861 gccctcgccg aagacgctgt ccagcaggac gaactccgtc gccatccagc cgatcggctc
     1921 gacgaattcc ttgggaacca gcgccttgtc ccagagcagg ctcacgtgcg gccagatctg
     1981 cggctcgcgc cgcggggcca tggttcccgc caccagcgcc ttgtgaatcg cggtgtgcag
     2041 cagctcgacg ccgatcacgc cctcgtcgcc cagcaggacc agcggatgcg ggtcgccctt
     2101 ccagctctcg acgtggttca gcgtcaccgt gaagggcgcg agcgcgacct tgtcggccag
     2161 cgccttggcc ttctccatca ccgcccacgt cggcggcccg cggaaggtcc cgacgaagtt
     2221 cagcgacagg tgcaggcgcg ctggcggcgt cagaacgccc ttcagtccat ggcgccggcg
     2281 caggtcctgg cccgacctga cgatccgctc ggccgcctcg gcgtccggct gcagcgcgaa
     2341 gaaaacccga tggtccggcg aagcagcgca ctcccgttca ggcttgactg agcccggtca
     2401 gcgtcttcct gctaggcggc gcacgtcacg tcaagaatga cggcctggga ggatggatcg
     2461 agatgaactg ccgccttttg cccctcgcgc tgttggcgac cgtcctcgcg gtttcaacag
     2521 ctctccccgc cgccgcccag accagccctg cgtcggtcgc caggggctac aaggcgccgc
     2581 gcaatgcctt cggccagccg gacatgtccg gtgtctggag caacgccacc atcacgcggc
     2641 tggagcgcga cccgaaatac ggcgaacgtc tcctgctgac tccggacgaa gccaaaacga
     2701 tcgagggcgc cagcgatcag cgcaacgcgc gtctgcgcgc caacaccgac acctcgaaca
     2761 aggaccccga caagctgccc gagtgccaga gcggagccac cggtgcggcc tgcggctaca
     2821 acgccttctg gaccgatccc ggcacccggc tggtgcgcat cggcggcgag gcccgcacct
     2881 cgatcctgac cgcgccggcc aacggccgcc tgccgggccg cccagctgcc ccggccgcgt
     2941 ccggccctgc gcgagcccgt ccgcagctcg gcggaaactt tgacaatccg gaaaaccggg
     3001 cactcggcga gcgctgcatc g
//
LOCUS       DATAJL010001011         1785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_114787,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001011 DATAJL010000000
VERSION     DATAJL010001011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114787"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            320..1378
                     /locus_tag="VHN39_19135"
     CDS             320..1378
                     /locus_tag="VHN39_19135"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEX2818516.1"
                     /translation="MHRQGLARILSRRRLYFTLGTSVLLGLLLSPLGKPGALLAVTRA
                     VMLGLLAMLVFGLFERWPARLPAWVARWGLQIVGVALAIPLGVFAISLLSTDAGAPPF
                     WHRHRVEGFGYLTFLGLLVAPWLAMAALLRQINGEALRQALAFELERSEFERQALGAR
                     LRLVQAQVEPHFLFNTLANVRELVETGSPRAPVVLGSLITYLRAAVPRLHEPAPTMGQ
                     ELELVRAYLEVMQMRMPDRMQFMLHVDAEALALSCPPMTLLTLVENAVRHGIDPSEEG
                     GRIDVRVDVREGRCRAEVVDSGVGLEHAGGGLGTGLSNLQERLRAAFGGDAQLQLLAI
                     EPHGVRAELVFPALRSAR"
     gene            1375..>1785
                     /locus_tag="VHN39_19140"
     CDS             1375..>1785
                     /locus_tag="VHN39_19140"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2818517.1"
                     /translation="MTGRRPTALIADDEPLLREALARLLSQAWPELEVVVQVRSGREA
                     VESFEAQRPDICFLDVHMPGLSGVEAARAIGARAHLVFVTAYDQYAVQAFHQGALDYL
                     VKPVELARLADTVARLKARLRAAQPLPDAEALLEQ"
BASE COUNT          243 a          591 c          651 g          300 t
ORIGIN      
        1 accaggaaga gcgtcccgaa gaggttcatg aacccgccgg gcgccatccc gcggaggatg
       61 tcgtcggtca ggtgaaacgt cagcagcagc atcgtgagca gggacgcgat gggcaacatc
      121 acgttgtgct tcatattggt atcccctcca ggtttcgagt gtagcggggc gcggtccgcg
      181 ttcggccggc ttgagacgga cgaccgattc tcggggatga gccacggcag gcgccgatgg
      241 gccgctgccc tgtgcaccgg cgctccggct gctgcttcaa atggtatctt tccaggcgat
      301 gccctccgca gcctctccaa tgcaccggca aggcctcgcc cggatcctga gccggaggcg
      361 gctctacttc acgttgggca cctcggttct gctcgggttg ctgctcagtc cgctcgggaa
      421 gccgggcgca ctgctggcgg tgacgcgcgc agtgatgctc gggctgctgg caatgctggt
      481 gttcgggctc ttcgagcgat ggccggcgcg cctgccggcc tgggtcgcgc gctgggggct
      541 tcagatcgtg ggcgtggcgc tggccattcc actgggcgtg ttcgcgatct ccctgctctc
      601 gacagacgcc ggcgcgccgc cgttctggca ccgccaccgg gtggaaggct tcgggtacct
      661 gaccttcctg ggcctgctcg tggcgccgtg gctggcgatg gcggcgctcc tgcgccagat
      721 caacggcgag gcgctacgcc aggccctggc cttcgagctg gagcgcagcg aattcgagcg
      781 ccaggcgctg ggcgcccgtc tccggttggt gcaggcgcag gtcgagccgc atttcctctt
      841 caacacactg gcgaacgtgc gcgagctggt ggagacgggc tcgccgcgcg ccccggtcgt
      901 gctgggcagc ctgatcacct atctgcgcgc cgcggtgccc cgcctccacg agcccgcccc
      961 cacgatgggg caggagctcg agctggtgcg cgcatatctg gaggtgatgc agatgcgcat
     1021 gcccgaccgg atgcagttca tgctccatgt cgatgccgaa gcgctggcgc tgtcgtgccc
     1081 gccgatgacc ctgctcaccc tggtcgagaa tgccgtgcgc cacggaatcg acccgagcga
     1141 ggaaggaggc cggatcgacg ttcgggtgga cgtgcgggaa gggcgctgcc gcgccgaggt
     1201 cgtcgattcg ggggtgggcc tcgaacatgc cggcggcggg ctgggcaccg gactctcaaa
     1261 cctgcaggag cgcttgcggg cggccttcgg cggcgatgcg cagctgcaac tgctggcgat
     1321 cgaaccgcac ggcgtgcgcg ccgagctggt ctttccggcc ttgcggagcg cgaggtgacg
     1381 ggccggcgtc cgacggcgct gatcgcggac gacgaacccc tgctgcgcga ggcgttggcg
     1441 cggctccttt cgcaggcatg gccagagctg gaggtcgtgg tccaggtgcg cagcggccgc
     1501 gaggcggtcg agtcgttcga ggcgcagcgg ccggacatct gtttcctcga cgtgcacatg
     1561 ccgggactgt cgggcgtcga agcggcacgc gccatcgggg ctcgcgcgca cctcgtgttc
     1621 gtcaccgcct acgaccagta cgcggttcaa gcctttcacc agggggcgct cgactacctg
     1681 gtgaagccgg tcgagctggc gcgcctggcc gacaccgtcg cgcgcctgaa ggcgaggctg
     1741 cgcgccgcgc agcctctgcc tgacgccgaa gccctgctgg aacag
//
LOCUS       DATAJL010001012         2020 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_114851,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001012 DATAJL010000000
VERSION     DATAJL010001012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114851"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..774
                     /locus_tag="VHN39_19145"
     CDS             <1..774
                     /locus_tag="VHN39_19145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818518.1"
                     /translation="HMTAAMRQPVLAAALALTCALVPVTDARAAHRAAHAPAPNRAKV
                     GYTRPAERILTQARTASGGEGWSMLRGWHETGREGASPYEAWFDPLRYGLRVETREAA
                     GKRVHGYNGQGDWQILPDGTTLADDDPAGVAATRTEAFFAAAGYFHRARFDARGELVG
                     VRSDDGRTFEAVLVKPWGGNARELWFDRRTHLLARMIDRNGPRPVTQQFSDYRRVGPV
                     MVAFQITVDTAGGPVQRRRDAVVFAPSDRALFSLPRTEP"
     gene            854..1420
                     /locus_tag="VHN39_19150"
     CDS             854..1420
                     /locus_tag="VHN39_19150"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX2818519.1"
                     /translation="MGSIVHLTPHQERPGDPALARVLYPAHRELRFAPTPVSRDALEQ
                     LHALMSVGPSMVDASPTQVLFLTSGRAKDRLAPHLGPAFHGEVLAAPAIAVVGYDVDF
                     AEQLVEFLPHVAGAPSCFDRPEVVRQTAVRNGGLQGAYLILAARTLGLEGVEICDVDA
                     AGVSLEFFRGARIRAIFLCALGYPAVGD"
     gene            1497..>2020
                     /locus_tag="VHN39_19155"
     CDS             1497..>2020
                     /locus_tag="VHN39_19155"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2818520.1"
                     /translation="MPKRPPPAHDRPSTIAEALERAALAIREQRLAEAERLAADVVRS
                     SRGNVPAAQLLGQALLLQGRPQEAIDPLQRAARRSHDPAIETLLARALAETGRGEAAL
                     DQLRQATARRPPYPLAFLELGDQLGKLGRFDEALAVFESGLALNPDAAVLRVGLGYLH
                     LHRNDRASARALFLA"
BASE COUNT          281 a          782 c          658 g          299 t
ORIGIN      
        1 cacatgacag cggccatgcg tcagcctgtc ctcgccgcgg ccctcgccct gacttgcgcc
       61 ctggtccccg tcaccgacgc gcgcgcggcc caccgtgcgg cccatgcgcc cgcccccaac
      121 cgcgcaaagg tgggttacac ccgcccggcc gaacggattc tcacccaggc ccgcacggcc
      181 tccggcggcg agggctggtc catgctgcgc ggctggcacg agacgggccg cgagggcgcc
      241 tcgccctacg aggcctggtt cgatcccctg cgctacggtc tgcgcgtcga gacccgcgag
      301 gccgccggca agcgggtgca cggctacaat ggccagggcg actggcagat cctccccgac
      361 gggacgaccc tggccgacga cgacccggcc ggcgtcgcgg ccacccgcac cgaggccttc
      421 ttcgccgccg ccggctactt ccaccgcgcc cgcttcgacg cccgcggcga actggtgggc
      481 gtgcgcagcg acgacggccg caccttcgaa gccgttctgg tcaagccctg gggcggcaat
      541 gcgcgggagc tgtggttcga ccggcgcacc catctcctgg cccgcatgat cgaccgcaat
      601 ggccccaggc cggtgacgca gcagttctcg gactaccggc gcgtcggccc ggtcatggtc
      661 gccttccaga tcaccgtcga caccgcaggc ggccccgtcc agcgccgccg cgacgccgtg
      721 gtcttcgccc cctccgaccg cgccctcttc agcctgccac gcaccgagcc ctagccgcgg
      781 gacaagcgct tgctaacaac ggatcgagag aatctacatt gtaatcccta ctagatcagt
      841 aggtgatgag ctgatgggat cgatcgtaca cctcacgccc caccaagagc gtcccggaga
      901 cccggcgctc gcccgggtcc tctaccccgc gcaccgtgag ctgaggttcg ccccgacgcc
      961 tgtttctcgc gacgccctgg aacagctgca cgccctgatg agcgtcggcc ccagcatggt
     1021 cgacgcctct ccgacccagg tgctgttcct gacaagcggc cgggccaagg accggcttgc
     1081 cccgcatctt gggccggcct tccacggcga agtcctggcc gccccggcca tcgccgtcgt
     1141 cggctatgac gtcgacttcg ccgagcagct ggtcgaattc ctgccgcatg tcgccggcgc
     1201 gccatcctgt ttcgataggc cggaggtcgt gcgccagacc gccgtgcgca acggcggcct
     1261 gcagggcgcc tatctcatcc tcgcggcccg aacgctcggc ctggagggcg tcgagatctg
     1321 cgacgtcgac gccgccggcg tatcgttgga gttcttccgc ggcgccagga tcagggcgat
     1381 cttcctgtgc gccctggggt atccggcggt gggggactga tctttcgaac ctgttatagg
     1441 gacgtcagcg gccgtcgccg tcccgcccgc gccacgctgc gttgttgtcg agagtgatgc
     1501 cgaagcgccc acctccagcc cacgaccggc cgagcaccat cgccgaggcg cttgagagag
     1561 cggcgctggc gatccgggaa cagcgcctcg ccgaggccga gcgcctggcg gccgacgtcg
     1621 tgaggtcgag ccggggcaat gttcccgccg cccagcttct cggtcaggcg ctcctgctgc
     1681 agggccggcc ccaggaggcc atcgatcctt tgcagcgcgc cgcgcgccgt agccacgatc
     1741 ccgcgatcga gaccctgctg gcccgagccc tggccgagac cgggcgaggc gaggcggcgc
     1801 tggatcagct gcgccaggcc acggcccgca ggccgcccta cccgctagcc ttcctcgaac
     1861 tcggcgacca gctcggcaag cttggacgct tcgacgaagc cctcgccgtc ttcgagagcg
     1921 ggcttgcgct caacccggac gccgccgtcc tgcgcgtggg gctgggctat ctgcatctgc
     1981 accgcaacga ccgcgcgagc gcgcgcgccc tgttcctggc
//
LOCUS       DATAJL010001013         3806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115048,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001013 DATAJL010000000
VERSION     DATAJL010001013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115048"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..505)
                     /locus_tag="VHN39_19160"
     CDS             complement(<1..505)
                     /locus_tag="VHN39_19160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004617310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015232 - heme transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HEX2818521.1"
                     /translation="MSRLGALLARETALAWGRGGGPMVAVGFYAGVATLLPLAIGPEP
                     TRLAAIAPGAAWVALALASLLSLDRLFERDFEDGALDHLALSPVPLELTCAAKCFGQW
                     LATGAPLALAAPIAAIGLGAPLTVAPLTLACALIGGLAFAFTGGIGAALTRGARRGGL
                     LTAMIVLP"
     gene            complement(502..1119)
                     /gene="ccmA"
                     /locus_tag="VHN39_19165"
     CDS             complement(502..1119)
                     /gene="ccmA"
                     /locus_tag="VHN39_19165"
                     /EC_number="7.6.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015439 - ABC-type heme transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015886 - heme transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC exporter ATP-binding protein CcmA"
                     /protein_id="HEX2818522.1"
                     /translation="MITGLELRGVSVRRGGRKLFSDLSLRLAAGEACALTGANGAGKT
                     SLLRAVAGLVPLEAGEVTFGGTDAAEARGGGLHLVGHQDGLKPARTVREELTFWSVWS
                     GGTTASVDEAAAELDLTPLLNLEVRRLSAGQRRRLALAKLIAAPRPLWLLDEPLSPLD
                     AGWRTRFGAIMQSHLAGGGLILAAVHDPLPIAAKVLEIASLETGG"
     gene            1307..>3806
                     /gene="acnA"
                     /locus_tag="VHN39_19170"
     CDS             1307..>3806
                     /gene="acnA"
                     /locus_tag="VHN39_19170"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002519154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEX2818523.1"
                     /translation="MASADSLKTRRELVVGDKTYAYYSLRAAEEAGLSGVSRLPISMK
                     VLLENLLRNEDGDSVGRDDLQAVAAWVENKGSVEHEISFRPARVLMQDFTGVPAVVDL
                     AAMRDAMTHLGANPEKINPLNPVDLVIDHSVMVDYFGTAKAFGENVEREYERNMERYR
                     FLRWGSSAFNNFRVVPPGTGICHQVNLEYLAQTVWVNEDGGHAVAYPDTVVGTDSHTT
                     MVNGLSVLGWGVGGIEAEAAMLGQPIPMLIPEVIGFKLEGAMPEGATATDLVLTVTQM
                     LRKKGVVGKFVEFYGPGLAKMTIEDQATIANMAPEYGATCGFFPVTRSTIDYLTATGR
                     DPHRVELVEAYAKEQGIWREPSDPDPVFTDTLELDLGSVLPSLAGPKRPQDRVVLTNA
                     AVEFKAALAGDFGKAEDMATRVKVEGANFDVGHGDVVIAAITSCTNTSNPSVLIAAGL
                     VAKKAVEKGLKVKPWVKTSLAPGSQVVTDYLKAAGLTKGLDALGFNLVGYGCTTCIGN
                     SGPLSEPISEAVQKGDLVAVSVLSGNRNFEGRVNPDVRANYLASPPLVVAYALAGSMS
                     IDITTESLGDGKDGKPVYLKDIWPTSEEVAVMQRKFVTQKMFATRYADVFKGDKAWQG
                     IKIEGGQTYGWDMGSTYVQNPPYFQNMSMEPTPVTDLVEARVLAVFGDSITTDHISPA
                     GSIKATSPAGVYLRDRQVPTMDFNSYGARRGNHEIMMRGTFANIRIRNRITPEIEGGM
                     TKHFPSGDVMSIYDAAMRYQSEGRHLVVFAGKEYGTGSSRDWAAKGTKLLGVRAVVAE
                     SFERIHRSNLVGMGVLPLQFLQEGWTKLGLTGEEI"
BASE COUNT          651 a         1355 c         1256 g          544 t
ORIGIN      
        1 gcggcagcac gatcatcgcg gtcaggaggc cgccgcgccg cgcgccccgc gtcagcgccg
       61 ccccgatccc gccggtgaaa gcgaaggcca ggccgccgat cagggcgcag gctaaggtca
      121 gcggcgccac ggtcagcggc gcgcccaggc cgatggcggc gatcggcgcg gccagagcca
      181 ggggcgcgcc agtggccagc cactggccga agcacttggc cgcgcaggtg agctccagcg
      241 ggaccggcga gagcgccagg tgatccagcg ctccgtcctc gaagtcgcgc tcgaagaggc
      301 gatccagcga aagcaggctc gccagcgcca gggccaccca agccgcgccg ggggctatgg
      361 ccgccagtcg cgtgggctcc ggcccgatgg ccagtggcag cagggtggcg acgccggcat
      421 agaagccgac ggcgaccatc ggcccgccgc cgcggcccca ggcgagcgcc gtttcgcggg
      481 ccaggagcgc gccaagccgg ctcacccccc agtctccaaa gaggcgatct ccagcacctt
      541 cgctgctatc ggcaggggat cgtggacggc ggcgaggatc agtccgcccc cggccagatg
      601 gctctgcatg atcgccccga accgcgtgcg ccagccggcg tcgagcgggc tcagaggctc
      661 gtccagcagc catagcggtc tgggcgccgc gatcagcttg gccagcgcga ggcgccgccg
      721 ctggccggcc gaaagccggc gcacctcaag gttcagcagg ggggtcaggt cgagctcggc
      781 cgccgcctcg tcgacggacg ccgtggtccc gccgctccac acgctccaga acgtcagctc
      841 ctcgcgtacg gtccgcgccg gcttcagccc gtcctgatga cccaccagat gcaggccgcc
      901 gccccgcgcc tcggccgcat cggtcccgcc gaacgtcacc tcgcccgctt cgagcggcac
      961 aaggcccgcc accgcgcgca acaggctggt cttgcccgcg ccattggctc cggtgagcgc
     1021 gcaggcctcg ccggcggcga gtctcagcga caggtcggag aacaactttc ggccccctcg
     1081 gcgcacgctc acgccacgca gttccagacc ggtgatcatc gaaggcccaa gctagactgt
     1141 ggcggtgcat ggacgcgtaa cacacgtggg tctatgaaac ccgcggccgc cgtcgccttg
     1201 ggggaccctc gccgcgctgg accggacgct gtgtgtccgc ttctgaaagc gcgcgatcct
     1261 cggggtgggc gtggtgtggc cgggaacaga gagaggatct ccccaaatgg cgtctgctga
     1321 cagcctgaaa acccgccgcg aactcgtggt gggtgacaag acctacgctt actacagcct
     1381 tcgcgccgcc gaggaagccg gactttccgg cgtttcgcgc ctgccgatct cgatgaaggt
     1441 gctgctcgag aacctgctgc gcaacgaaga cggcgactcg gtcggccgcg acgacctgca
     1501 agcggtcgcc gcctgggtcg agaacaaggg ctccgtcgag cacgagatca gcttccgtcc
     1561 ggcccgggtc ctgatgcagg atttcaccgg ggttccggcg gtcgtcgacc tggccgccat
     1621 gcgcgacgcc atgacccatc tcggcgccaa tcccgagaag atcaatccgc tgaaccccgt
     1681 cgacctggtg atcgaccact cggtgatggt cgactacttc ggcaccgcca aggccttcgg
     1741 cgagaatgtg gagcgcgaat atgagcgcaa catggagcgc taccgcttcc tgcgctgggg
     1801 ctcgtcggcc ttcaacaact tccgcgtggt gccgcccggc accggaatct gccaccaggt
     1861 gaacctggaa tacctcgccc agaccgtctg ggtgaacgag gacggcggcc atgcggtcgc
     1921 ctatccggac accgtggtcg gcaccgacag ccacaccacc atggtcaatg gcctgtcggt
     1981 cctgggctgg ggcgttggcg gcatcgaggc cgaggccgcc atgctcggcc agccgatccc
     2041 gatgctgatt cccgaggtca tcggcttcaa gctggagggc gccatgcccg agggcgcgac
     2101 cgccaccgac ctggtgctga ccgtcaccca gatgctccgc aagaagggcg tggtcggcaa
     2161 gttcgtcgaa ttctacggcc ccggcctcgc caagatgacc atcgaggatc aggcgaccat
     2221 cgccaacatg gccccggaat atggcgcgac ctgcggcttc ttcccggtca cccgctcgac
     2281 catcgactac ctgaccgcca ccggccgcga cccgcaccgg gttgagctgg tggaagccta
     2341 cgccaaggaa cagggcatct ggcgcgagcc cagcgatccc gatccggtgt tcaccgacac
     2401 gctcgagctc gaccttggca gtgtcctgcc ctcgctggcc ggcccgaagc gtcctcagga
     2461 ccgcgtggtg ctgaccaacg ccgccgtcga gttcaaggcc gcgctggccg gcgacttcgg
     2521 caaggccgag gacatggcca cccgcgtgaa ggtggaaggc gccaacttcg acgtcggcca
     2581 cggcgacgtg gtgatcgccg ccatcacctc gtgcaccaac acgtccaacc cctcggtgtt
     2641 gatcgccgcg ggcctggtgg ccaagaaggc cgtcgaaaag ggcttgaagg tgaagccgtg
     2701 ggtgaagacc tcgctggcgc cgggaagcca ggtggtcacc gactatctga aggccgcggg
     2761 cctcaccaaa ggcctcgacg ctctgggctt caacctggtg ggctacggct gcaccacctg
     2821 catcggcaac tccggcccgc tctccgagcc gatctccgaa gccgtgcaga agggcgacct
     2881 ggtcgccgtc tcggtgctct ccggcaaccg caatttcgag ggccgcgtaa accccgacgt
     2941 gcgcgccaac tacctggcct cgccgccgct ggtggtggcc tatgcgctgg ccgggtccat
     3001 gtcgatcgac atcaccaccg agtcgctggg tgacggcaag gacggcaagc cggtctatct
     3061 gaaggacatc tggccgacct ccgaagaggt ggctgtcatg cagcgcaagt tcgtgaccca
     3121 gaagatgttc gccacccgct acgccgacgt cttcaagggc gacaaggcct ggcagggcat
     3181 caagatcgag ggcggccaga cctacggctg ggacatgggc tcgacctacg tccagaaccc
     3241 gccctacttc cagaacatgt ccatggagcc gaccccggtc accgacctgg tcgaggcccg
     3301 cgtgctggcg gtgttcggcg actcgatcac caccgaccac atctccccgg ccggttcgat
     3361 caaggcgacg tcgcccgccg gcgtctacct gcgcgaccgc caggtgccga ccatggactt
     3421 caactcctat ggcgcgcgcc gcggcaacca cgagatcatg atgcgcggca ccttcgccaa
     3481 catccggatc aggaaccgca tcacccccga aatcgaaggg ggcatgacca agcacttccc
     3541 ctccggcgac gtgatgtcga tctatgacgc ggccatgcgc taccagtccg agggccgcca
     3601 cctggtggtg ttcgcgggca aggaatatgg caccggctcg tcccgcgact gggcggccaa
     3661 gggcaccaag ctgctgggcg tccgcgccgt ggtggccgaa agcttcgagc gcatccaccg
     3721 ctcgaacctg gtgggcatgg gcgtcctgcc gctgcagttc ctgcaggagg gctggaccaa
     3781 gctcggcctg accggcgagg agatcg
//
LOCUS       DATAJL010001014         2744 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115094,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001014 DATAJL010000000
VERSION     DATAJL010001014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115094"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..608)
                     /locus_tag="VHN39_19175"
     CDS             complement(<1..608)
                     /locus_tag="VHN39_19175"
                     /inference="COORDINATES: protein motif:HMM:NF014476.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2818524.1"
                     /translation="MEPRFIGREEIRRVLTFEACAPLMREAMIAVSSGGINQPPRQIL
                     PLVSGRGVFGIMPGVIGDDRFGAKLISAFNHPQGSPLPAHQGVVVLFDPETGSPVCIL
                     DAGEITRIRTAAASSMATDVLARPDAGDLLVLGTGEQAEAHIRAIAALRPLRRIMLWG
                     RNPDHSRRLAEVLAAEAGMAVEVARDLQAAAAEAAAGRRSPG"
     gene            complement(617..2473)
                     /locus_tag="VHN39_19180"
     CDS             complement(617..2473)
                     /locus_tag="VHN39_19180"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2818525.1"
                     /translation="MTGHALTAEDAAAYFDGLLPDAISRADIAGAVIVIVKDGQPLLE
                     RGYGVSDVKTRRPVDPETTLFRPGSISKTFMWTAVMQQVEAGKIDLDADVNQYLDFKI
                     PPYDGKPITMRNLMTHTSGFSDAAKDLIFSDPKRLKSLGATLRDSAPARIYPPGTTPA
                     YSNYGAALAGYIVERVSGEPFADYIAHHILVPLGMTHSTFVQPLPDGWSVNMSKGYSV
                     ASKPPEKYEIVGPSPAGSMATTGSDMARFMIAHLQDGEYQGQRILAAKTAETMHSPQF
                     IPVPSLPGMAFGFYQEPGNGRRVIGHAGDTSYFHSDMHLYLDDHVGLFISFNSAGGAG
                     AAHTIRATVFKGFTNRYFPAAPALAAPTWKDAKADGRTLSGRYIDSRRSDTGWLRIGG
                     FLLGQTKVTADPSGVVTVSSYRGVNNQPKHWREVGPFQYQEVGGDSRMAAVAEGGKVT
                     RIMTDDQPPVLSIEPVSPAMSAIWNVPMFFVTLGILVIAAGTWPAAAIIRKRYRHSFE
                     LTGRAALLYRLTRAVCVVDLAFAGLWFWFLSHSGSDWFNSSNDWIIRLIQLVGLVGVV
                     GAVAPLVYVGVVFADPARSWWAKVSSVSIALACLACIWFAFSLHLITAQIAY"
BASE COUNT          485 a          879 c          938 g          442 t
ORIGIN      
        1 catccgggcg atcgccgccc tgcggccgct tcggcggcgg cggcctgcag gtccctggcg
       61 acctcgaccg ccatccccgc ctccgcggcc agcacctcgg ccaaccgccg cgagtggtcc
      121 ggattgcggc cccaaagcat gatccgccga agcggccgca gggcggcgat cgcccggatg
      181 tgggcctccg cctgctcccc cgttcccagg acgagcagat cgccggcgtc cgggcgggcc
      241 aggacatccg tcgccatcga gctcgccgcg gcggtccgga tccgggtgat ctccccggcg
      301 tcgaggatgc agacgggaga tccggtttca ggatcgaaca gcacgaccac accctgatgc
      361 gccggcagcg gtgagccctg cgggtggttg aaggcgctga tcagcttggc gccgaaccgg
      421 tcgtcgccga tcacgccggg catgatcccg aacacgcctc ggccgctgac cagcggcaag
      481 atctggcgcg gcggctggtt gatgccgccg ctcgacaccg cgatcatggc ctcgcgcatc
      541 agcggcgcgc aggcctcgaa ggtcaggacc cggcgaatct cctcgcggcc gatgaacctg
      601 ggttccatgt ccagcctcaa taggcgatct gcgcggtgat caggtgcagg ctgaaggcga
      661 accagatgca ggccaggcac gcgagcgcga tggaaacgct cgagaccttg gcccaccagc
      721 ttcgtgcggg gtcggcgaag accacgccga cgtagaccag gggcgcgacc gcgcccacga
      781 cgccgactag gccgacgagc tggatcagtc gaatgatcca gtcattgctg ctgttgaacc
      841 agtcgctgcc gctgtgggac aggaaccaga accacagccc tgcgaaggcc aggtccacga
      901 cgcagacggc tcgggtcagt cggtagagca gcgccgcgcg gccggtcagc tcgaaactgt
      961 ggcgatagcg cttgcggatg atcgcggcgg ccggccaggt ccccgcggcg atcaccagga
     1021 tccctagggt cacgaagaac atcggcacgt tccaaatcgc cgacatggcc ggcgagaccg
     1081 gctcgatcga caggaccgga ggttggtcgt ccgtcatgat gcgcgtcacc ttgccgccct
     1141 cggcgaccgc ggccatccgg ctgtcgccgc cgacttcctg gtactggaac ggtccgactt
     1201 cgcgccaatg cttgggttgg ttgttcacgc cgcggtagct cgacaccgtc accacgccac
     1261 tcggatcggc ggtgaccttc gtctggccca ggaggaatcc gccaattctc aaccagccgg
     1321 tgtcggaccg gcgactatcg atgtagcggc cagagagcgt ccgcccgtcg gccttggcgt
     1381 ccttccaggt cggcgccgcc agcgccggcg cggccgggaa atagcggttg gtgaaaccct
     1441 tgaagaccgt cgcgcggatc gtgtgcgcgg cgcccgcgcc tccggcgctg ttgaaggaga
     1501 tgaacaggcc gacgtggtcg tcgagataga ggtgcatgtc gctgtggaag tagctggtat
     1561 caccggcgtg accgatcaca cggcgtccgt ttccgggctc ctgatagaag ccaaacgcca
     1621 tgccaggaag cgaggggacc ggtatgaact gcgggctgtg catcgtttcg gccgtcttgg
     1681 ccgccaggat gcgctggcct tggtattccc cgtcttgcag atgggcgatc atgaagcggg
     1741 ccatgtccga cccggtcgtc gccatcgagc ctgcgggaga cggcccgaca atctcgtatt
     1801 tttcgggcgg cttcgaggcc acggaatagc ccttggacat gttcaccgac caaccgtccg
     1861 ggagcggctg gacgaaggtg gaatgggtca tgccgagcgg gacgagaatg tggtgcgcga
     1921 tgtagtccgc gaacggctcg ccggacacgc gttccacgat atagccggca agggcggcgc
     1981 cgtaattcga gtaggcgggc gtggtccccg gcggatagat gcgcgccggc gcggaatccc
     2041 tgagcgtcgc gccgagactc ttcaagcgct tcgggtcgct gaagatgaga tccttggccg
     2101 cgtcggagaa ccccgacgta tgggtcatca ggttgcgcat ggtgatcggc ttgccgtcgt
     2161 agggcgggat cttgaagtcc aggtactggt tgacgtcggc gtcgaggtcg atcttgcccg
     2221 cctcgacctg ctgcatgacc gcggtccaca tgaacgtctt cgaaatggag ccaggccgga
     2281 agagcgtcgt ttcgggatcg accggccgcc tcgtcttaac gtccgaaacg ccgtagccgc
     2341 gctcaagcag aggttgcccg tccttcacga tgacgatgac cgcgccggcg atatccgcgc
     2401 ggcttatcgc gtcgggcagc aatccgtcga aataggcggc ggcgtcttca gcggtgagcg
     2461 cgtgtccggt catcggcggc gggacggcgg agccgtctgc cgtatgcgaa ccaggtgtgg
     2521 gaaccgaaac gacagggctg ggcgccaggg acgtgggcga tgggttcacc ggcgaagggg
     2581 cgaaaccact aagggcgacg aacatcgcgc caagcgcagc gaaccttgat agcgatttca
     2641 tcctttaagc cccttggaac agcgcgaaat ccgaaacgtc catctcaaga ccgggcgtgt
     2701 gtgaactgga gcctctaggc gacataagag caaagccgct atat
//
LOCUS       DATAJL010001015         3727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115208,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001015 DATAJL010000000
VERSION     DATAJL010001015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 3727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3727
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115208"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VHN39_19185"
     CDS             <1..328
                     /locus_tag="VHN39_19185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818526.1"
                     /translation="ITLNKMNFQALRQTIGRTAAESRAANGPSAATSIIKYAAAEFAK
                     ERGELMVEAMGAQGLGWQGEGFSAPEIATVHGWLRAKANSIEGGTSEVNLNVVSKRVL
                     GLPDPK"
     gene            397..1623
                     /locus_tag="VHN39_19190"
     CDS             397..1623
                     /locus_tag="VHN39_19190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002517501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818527.1"
                     /translation="MADSGADFGGDVEAFRAEVRTWLDANFPEAFKREPSRQAAMAAG
                     LADDESADAKAWRKAMGAKGWGTPTWPAEHGGGGLSRAEARVLQEEMAKIGARNPIGG
                     MGVMMFGPTLIEYGTPELKAQHLPGIIKGEVRWCQGYSEPGAGSDLAGLQTRAEDKGD
                     HWLVNGSKIWTSGANFADQCFCLVRTDTTKKHEGISFLLIDMKGPGVETRPILLINGT
                     SPFCETFFTDVKVAKDQLFGPLNGGWTVAKRLLQFERDNISAGLGGGNIGQATPLPTV
                     VEAAKDYVGLDETGRIADRDLRRRITDHLMEARSFQLTVRRAADEAKSNQGPSAATSI
                     MKYAGAKIAQDRNELLVEAMGHQGLGWEGEAYSPPEITAFRTMLRSKANSIEGGTSEI
                     NLNVVSKRVLGLPDPK"
     gene            1708..2901
                     /locus_tag="VHN39_19195"
     CDS             1708..2901
                     /locus_tag="VHN39_19195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818528.1"
                     /translation="MADFGGSELDAFRAEAREWLEANFPKSLADQQTAMIPGGEALTD
                     DGKLWKQRMADKGWGAPTWPTEYGGGGLSGAEARVLLQEMNRIGAENPVAGMGTSMFG
                     PTLLEYGTEAQKKRHIPPIVRGELRWCQGYSEPGAGSDLASLQTKCVDAGDHWQIDGQ
                     KIWTSGAQYADWCFCLVRTDTSKKHEGISFVLIDMHQDGVETRPIKLIAGTSPFCETF
                     FTAARAEKDDMVGPLNGGWTVGKRLLQHERSGQGGGRMMAGQDVVSLAKKYVGVDDKG
                     RIADSDLRTRIAKHLIDAKAHSLTLARAAAEAKGNVNPSATTSVMKNSGTWIGQEKAE
                     LTLEIMGAQGLGWSGDEFSKDERDAVRTWLSGKATTIFGGSQEIQSNIVSKRILGLPD
                     TTQNG"
     gene            2917..>3727
                     /locus_tag="VHN39_19200"
     CDS             2917..>3727
                     /locus_tag="VHN39_19200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2818529.1"
                     /translation="MADFGGAELDAFRQETRDWLEANFPASLRRDASAVVNAEATGAE
                     LDGDAALWKQRMAQAGLGTPTWPKAYGGAGLGRAEAKVLAEEMARIGAPNPIGGMGVI
                     MFGPTLLEYGNEAQLRTHIPPIVKGELRWCQGFSEPGAGSDLAGLQTKAVDMGDHYLV
                     SGSKIWTSGAHLADWCFCLVRTDATKKHEGISFLLIDMRSPGVEARPILLINGTTPFC
                     ETFFTDVKVPKENLMGPLNGGWTIAKRLLQHERQGISGAGQLTPGAQAGAVP"
BASE COUNT          708 a         1143 c         1323 g          553 t
ORIGIN      
        1 gatcacgctc aacaagatga acttccaggc cttgcggcaa accatcgggc gcacggcagc
       61 cgagtcacgc gcggcgaacg ggccaagcgc cgcgacctcg atcatcaaat atgcggcggc
      121 cgagttcgcc aaggagcgcg gcgaactgat ggtcgaggcc atgggcgcgc agggtctggg
      181 ttggcagggc gagggcttca gcgccccgga gatcgccacg gtccacggct ggctgcgcgc
      241 caaggccaat tcgatcgagg gcggcacctc ggaggtcaat ctgaacgtgg tctccaagcg
      301 ggtgctgggc cttcctgatc ccaagtagag ttctctgagc gccgttctat tttgagcggg
      361 gccgacggtt cgatttttcc aggacgcaat ttcccaatgg ccgattctgg ggcggatttt
      421 ggcggcgacg tggaggcctt ccgggccgag gtccggacgt ggctggacgc gaactttccc
      481 gaggctttca agcgcgagcc gtcgcggcag gcggccatgg cggcgggtct ggcggacgac
      541 gagagcgccg acgccaaggc ctggcgcaag gccatgggcg cgaagggctg gggcacgccc
      601 acctggcccg ccgaacacgg cggcggcggc ctgagccggg ccgaggcgcg cgtcctgcag
      661 gaggagatgg cgaagatcgg cgcccgcaac ccgatcggcg gcatgggcgt gatgatgttc
      721 ggcccgacgc tgatcgaata cggcacgccg gagctgaaag cccagcacct gcccgggatc
      781 atcaagggcg aggtgcgctg gtgccaaggc tattcggaac cgggcgcagg gtctgactta
      841 gcaggtctac agacgcgcgc cgaagacaaa ggcgaccact ggctggtgaa cggaagtaag
      901 atctggacca gcggcgcgaa tttcgctgac caatgcttct gtcttgtccg tacagatacc
      961 acgaagaagc atgagggcat aagttttcta ctcatcgaca tgaaaggtcc gggggtggag
     1021 acgcggccga tcctgttgat caacgggacc tcgcccttct gcgagacgtt tttcacggat
     1081 gtgaaggtgg cgaaggacca gctgttcggg ccgctgaacg gcggctggac ggtggccaag
     1141 cggctgctgc agttcgagcg ggacaacatc tccgcgggcc tgggcggcgg caacatcggc
     1201 caggccacgc cgctgccgac ggtggtcgag gcggccaagg actatgtggg cctcgacgag
     1261 accgggcgga tcgcggatcg ggacctgcgc cggcgcatca ccgaccacct gatggaagcc
     1321 cggagcttcc agctgacagt gcggcgcgcg gccgatgagg cgaagtcgaa ccaggggccc
     1381 tcggcggcca cctcgatcat gaaatacgcc ggcgccaaga tcgcccagga ccgcaacgaa
     1441 ctgctggtcg aggccatggg gcatcagggc cttggctggg agggcgaggc ctattcgccg
     1501 ccggagatca ccgcgttccg gaccatgctc cgatccaagg ccaactccat cgaaggcggc
     1561 acctcggaga tcaatctgaa cgtggtttcg aagcgggtcc tgggcttgcc tgatcccaag
     1621 tagactgacg tgactccaaa ctgtccgatt tccgtgctag catttaccta agatattgaa
     1681 aaattaagat attagggaga tttcgagatg gccgactttg gcggttccga gctggacgcc
     1741 ttccgcgccg aggcgcgcga gtggctcgag gccaatttcc ccaagtcgct ggccgaccag
     1801 cagaccgcga tgatcccggg cggcgaggcg ctgaccgacg acggcaagct gtggaaacag
     1861 cggatggccg acaagggctg gggcgcgccg acctggccga cggaatacgg cggcggcggg
     1921 ctttcgggcg ccgaggcccg cgtgctgctg caggaaatga accgcatcgg ggcggagaac
     1981 ccggtggccg gcatggggac gtcgatgttc ggcccgacgc tgctggaata cggcaccgag
     2041 gcccagaaga agcggcacat cccgcccatc gtcaggggcg agctgcgctg gtgccagggc
     2101 tactccgaac cgggcgccgg atcggatctc gcgagcctgc agaccaagtg cgtagacgcc
     2161 ggagatcatt ggcaaatcga cggccaaaaa atatggacga gcggcgccca atacgccgac
     2221 tggtgcttct gcctggtgcg caccgacacc tcgaaaaagc acgagggcat ctccttcgtg
     2281 ctgatcgaca tgcatcagga cggcgtcgag acgcggccga tcaagctgat cgccggcacc
     2341 tcgccgttct gcgagacctt cttcaccgcc gcgcgggccg agaaggacga catggtcggc
     2401 ccgctgaacg gcggctggac ggtgggcaag cggctgctgc agcacgagcg gtcgggccag
     2461 ggcggcgggc ggatgatggc cggccaggac gtggtctcgc tggccaagaa atatgtcggc
     2521 gtcgacgaca agggccggat cgccgacagc gatctgcgca cgcggatcgc caagcacctg
     2581 atcgacgcca aggcccacag cctgacgctc gcgcgggcgg ccgcggaagc caagggcaat
     2641 gtgaacccct cggcgaccac ctcggtgatg aagaactccg gcacctggat cggtcaggag
     2701 aaggccgagc tgacgctgga gatcatgggc gcccagggcc tgggctggag cggcgacgag
     2761 ttctccaagg atgagcgcga cgcggtgcgc acctggctct cgggcaaggc cacgacgatc
     2821 ttcggcggca gccaggagat ccagtcgaac atcgtgtcca agcggattct cggtctgccg
     2881 gacacgacgc agaacggcta ggcgggagga cgcacgatgg cggatttcgg cggcgctgag
     2941 ctggacgctt tccggcagga aacccgtgat tggctggagg ccaatttccc ggcgtcgctg
     3001 cggcgtgacg ccagcgcggt ggtcaatgcg gaagccaccg gggccgagct cgacggcgac
     3061 gcggcgctct ggaaacagcg gatggcgcag gccggtctcg gcacgcccac ctggcccaag
     3121 gcctatggcg gcgcgggact cggccgggcg gaggccaagg tgctggccga ggagatggcc
     3181 cgcatcggcg cgcccaatcc gatcggcggc atgggcgtga tcatgttcgg cccgacgctg
     3241 ctggaatacg gcaacgaggc gcagcttcgc acccacatcc cgcccatcgt caaaggcgag
     3301 ctgcgctggt gccaggggtt ctccgaaccg ggcgccggat cggacctggc gggcctgcag
     3361 accaaggccg tcgacatggg cgaccactat ctcgtaagtg gttcaaaaat atggacttct
     3421 ggcgctcatc ttgccgattg gtgcttctgc ctggtgcgca cggacgccac gaaaaagcat
     3481 gaggggatca gcttcctgtt gatcgacatg aggagcccgg gcgtcgaggc caggccgatc
     3541 ctgctgatca acgggaccac gcccttctgc gagaccttct tcaccgacgt gaaggtgcct
     3601 aaggaaaacc tgatggggcc gctgaacggc ggctggacca tcgccaagcg gctcttgcag
     3661 cacgagcggc agggcatctc cggcgccggg caactgaccc cgggcgcgca ggcgggcgcc
     3721 gtgccgg
//
LOCUS       DATAJL010001016         1892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115221,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001016 DATAJL010000000
VERSION     DATAJL010001016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1892
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115221"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..266
                     /locus_tag="VHN39_19205"
     CDS             <1..266
                     /locus_tag="VHN39_19205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HEX2818530.1"
                     /translation="MAVGEAARVTIDTFPGRVLRGHVVAFSPGSGSQFALLPPDNATG
                     NFTKVVQRIGVKIALDDADGLTDRLRAGMSVVARIDARDGARP"
     gene            263..1876
                     /locus_tag="VHN39_19210"
     CDS             263..1876
                     /locus_tag="VHN39_19210"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2818531.1"
                     /translation="MTAEAHPAPAAAAPASERRWASAWGLAAVLLGTFLSTLNGRLST
                     FGLNDIRGAIHAGFDEGAWITTAQTAAQMLVVPVTIWLGGVYGTRRVLMYSALAFAMV
                     SLAKPFSPNLDILLALQFAGGMASGTFIPLTLGFILRTMPPRLWPYGVAIYALNLELS
                     LNISASIEGFYGDHLSWVWIFWQSVPLALAMALCLHLAGGPEAKNPDAKPHDVYGLAT
                     GGVGLALIYAALDQGNRLDWLNSGLIWGLLIAGAVSLVAFLVNELRTEHPFMDLKVLA
                     RPPFLSVAVLIGILRLTILSTAYLIPTFLGGVRGFRSLEMGRTLIWIAAPQFLVCAFA
                     GLTLRRIDARASAALGFICIATACLLVAHGLTPVWGSDQFWPSQLLQAVGQSFALTGI
                     VFYAVQHITPASALTLGAFSQVARLMGGEIGQAFMVTFVRIRSQTADNLIGLHVQAGD
                     PAIIQRIGLYGAVTARLGDAAAAAPRGSALLASQVRSAATTQAVIDGFVTIAAFAALG
                     MLLLAAQKAAPPGPAAPRPLFGVREGASG"
BASE COUNT          237 a          658 c          638 g          359 t
ORIGIN      
        1 atatggcggt gggcgaggcg gcgcgggtca ccatcgacac cttcccaggc cgtgtgctgc
       61 gcggccatgt ggtcgccttc tcgccggggt ccgggtcgca gttcgccctg ctgccgccgg
      121 ataacgccac cggcaatttc acaaaggtgg tgcaacggat cggggtgaag atcgcgctcg
      181 acgatgcgga cggtctgacg gaccgtctgc gggcgggcat gtcggtcgtg gcccgcattg
      241 acgcccgcga cggcgctcgg ccatgacggc cgaggcgcat ccggcgcctg cggcggcggc
      301 tccggcgtcc gagaggcgct gggcctcggc ctgggggctt gcggcggtgt tgctgggcac
      361 cttcctgtcg accctgaacg gccggctctc gaccttcggt ctcaacgaca tccgcggcgc
      421 gatccatgcc ggcttcgacg aaggcgcatg gatcaccacc gcccagacag ccgcccagat
      481 gctggtggtg ccggtcacca tctggctcgg cggggtctat ggcacccgca gagtgctgat
      541 gtattcagcg ctcgccttcg ccatggtgtc cctggccaag ccgttctcgc ccaacctcga
      601 tattctcctg gccctgcaat tcgcgggggg gatggcctcg ggcaccttca tcccactcac
      661 cctgggcttc atcctgcgga ccatgccgcc ccgtctttgg ccctatggcg tggcgatcta
      721 cgcgctcaac ctggagctct cgctcaacat ctccgcctcg atcgagggtt tctacggcga
      781 ccatctgagc tgggtgtgga tcttctggca gagcgtgccg ctggcgctcg ccatggcgct
      841 ttgcctgcat ctggccggag ggccggaggc caagaacccc gacgccaagc cgcatgacgt
      901 ctatggcctg gcgaccggcg gggtgggcct ggcgctgatc tatgcggcgc tcgaccaggg
      961 caaccgcctg gactggctga attccggcct gatctggggg ctactgatcg ccggcgctgt
     1021 cagtctcgtg gccttcctcg tgaacgagct gcgcaccgag catcctttca tggacctgaa
     1081 ggtcctcgcc cggcccccgt tcctgagtgt cgcagtgctg atcgggatct tgcgcctgac
     1141 gatcctctcc accgcctacc tgatccccac cttcctgggc ggggtgcgcg ggttccgctc
     1201 gctggagatg ggccgcaccc tgatctggat cgccgcgccg cagttcctgg tctgcgcgtt
     1261 cgcgggcctg acactccgac ggatcgacgc gcgcgcgtct gcggcgctgg gcttcatttg
     1321 cattgcgacg gcctgcctgc tggtcgccca cggcctgacg ccggtctggg gctctgacca
     1381 gttctggccg tcgcagctct tgcaggcggt gggccagagc ttcgcgctca ccggcatcgt
     1441 cttctacgct gtgcagcaca tcactccggc ctccgccctg acgctggggg cgttctctca
     1501 ggtcgcccgc ctgatgggcg gagagatcgg ccaggccttc atggtcacct tcgtgcgcat
     1561 ccgttcgcag acggccgaca acctgatcgg gttgcacgtc caggccggtg accctgcgat
     1621 catccagcgg atcgggctct atggagcggt gacggcgcgg ctcggggacg ccgccgccgc
     1681 cgcgccgcgc ggctcggcgc tgttggccag ccaggtgcgc agcgccgcga ccacccaggc
     1741 cgtgatcgac ggctttgtta cgatcgcggc ttttgcggca ttgggcatgt tgctgcttgc
     1801 cgcccaaaag gcggcgcccc cggggcccgc ggcgccgcga ccgctgttcg gcgtgcggga
     1861 aggagcttcg ggatgaaaca cctctggctt ct
//
LOCUS       DATAJL010001017         2519 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115267,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001017 DATAJL010000000
VERSION     DATAJL010001017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2519)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2519)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2519
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115267"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1261)
                     /gene="atpD"
                     /locus_tag="VHN39_19215"
     CDS             complement(<1..1261)
                     /gene="atpD"
                     /locus_tag="VHN39_19215"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003167473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000275 - mitochondrial
                     proton-transporting ATP synthase complex, catalytic sector
                     F(1) [Evidence IEA];
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEX2818532.1"
                     /translation="MATTTAKKPAAKKPAAPKAPAKTPAAATKRVATGRLVQIIGAVV
                     DVEFVGHLPAIQSALETTNTDQRTGEPFRLVFEVAQHLGENTVRAIAMDTTEGLTRGQ
                     PVFDTGIPITVPVGPATLGRIMNVIGDPIDEAGPIAHTHMSSIHREAPSFAEQSTSAD
                     ILVTGIKVIDLLCPYTKGGKTGLFGGAGVGKTVTMQELINNIAKAYGGYSVLAGVGER
                     TREGNDLYHEMIESNVNLPGGGEGSKCTLVYGQMNEPPGARARVALTGLAQAEYFRDV
                     EGKDVLLFIDNIFRFTQAGAEVSALLGRIPSAVGYQPTLATEMGNLQERIASTNKGSI
                     TSVQAIYVPADDPTDPAPATAFSHLDATTMLARDIAAQGIFPAIDPLDSNSRILDPLV
                     IGEEHYNVARRVQEILQHYKALKDVIAI"
     gene            complement(1284..2150)
                     /locus_tag="VHN39_19220"
     CDS             complement(1284..2150)
                     /locus_tag="VHN39_19220"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007676278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEX2818533.1"
                     /translation="MASLKEMRNRIGSVKATQKITKALQMVAAAKLRRSQDAAQNARP
                     YAERMAAVIANLAAGVSGEGAPKLLVGTGADQRHLIVVATSDRGLAGGFNSSIVRAAR
                     EKISRLLSEGKDVRILTVGRKARDQLKRLDRAVGAFEAGGNPSLEVAVEVAAKVRELF
                     EAGDVDVVTLYFSKFRSVVIQTPTGVQLIPAEVKAAAQPIDLKGAVYEYEPDEETILE
                     ELLPRNITTQIFSAMLENQAGFYAAQMTAMDNATRNAGDMISALTLKYNRSRQAQITK
                     ELIEIISGAEAL"
     gene            complement(2180..>2519)
                     /locus_tag="VHN39_19225"
     CDS             complement(2180..>2519)
                     /locus_tag="VHN39_19225"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012288731.1"
                     /note="produces ATP from ADP in the presence of a proton
                     gradient across the membrane; the alpha chain is a
                     catalytic subunit; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEX2818534.1"
                     /translation="YREMAAFAKFGSDLDVTTQRQLARGERLTELLKQPQYSPQSVEE
                     QVCVIYAGTRGYLDGIATNQVRRFESELLSHLHTKHQPMLDKIRIEKDLKTVEDDLKS
                     VLAAFASTFA"
BASE COUNT          350 a          777 c          910 g          482 t
ORIGIN      
        1 gtatggcgat gacgtccttg agcgccttgt agtgctgcag gatttcctgc acgcgccggg
       61 cgacgttgta gtgttcttcg ccgatcacca gcggatcgag gatgcgcgaa ttggagtcca
      121 gcggatcgat cgccgggaag atgccctggg cggcgatgtc gcgcgccagc atggtggtgg
      181 cgtccaggtg ggagaaggcg gtggccggcg ccgggtcggt cgggtcgtcg gccggcacgt
      241 agatggcctg cacggaggtg atcgagccct tgttggtgga tgcgatgcgt tcctgcaggt
      301 tgcccatctc ggtggccagc gtcggctgat agcccaccgc ggacgggatg cggcccagca
      361 gggccgacac ttcggcgccg gcctgggtga agcggaagat gttgtcgatg aagagcagca
      421 cgtccttgcc ctccacgtcg cggaagtatt ccgcctgggc gaggccggtc agagcgacac
      481 gggctcgcgc gcccggaggc tcgttcatct ggccatagac cagggtgcac ttggagcctt
      541 cgccgccgcc cggcaggttc acgttcgact cgatcatctc gtgatagagg tcgttgcctt
      601 cacgcgtgcg ctcgccgacg cccgccagca ccgaatagcc gccgtaggcc ttggcgatgt
      661 tgttgatcag ttcctgcatg gtcacggtct tgccgacgcc ggccccgccg aacaggccgg
      721 tcttgccgcc cttggtgtag gggcaaagca ggtcgatgac cttgatcccg gtcaccagga
      781 tatcggccga ggtggactgc tcggcgaagg acggggcctc gcggtggatc gacgacatat
      841 gggtgtgcgc gatcgggccg gcctcgtcga tcgggtcgcc gatgacgttc attatccggc
      901 cgagcgtcgc cggacccacc ggcacggtga tcgggatgcc ggtgtcgaac accggctggc
      961 cgcgggtcag gccctcggtg gtgtccatgg cgatggcgcg cacggtgttc tcgcccaggt
     1021 gctgggcgac ctcgaacacc aggcggaagg gctcgccggt ccgctggtcg gtattggtgg
     1081 tttccagcgc cgactggatc gccggcaggt ggcctacgaa ctccacgtcg accacggcgc
     1141 cgatgatctg caccaggcgg ccggtggcga cacgcttggt cgcggcagcc ggagtcttcg
     1201 caggggcctt cggggcggcc ggcttcttcg cggcgggctt tttggcggtg gtggtggcca
     1261 tgactgtctc tttcggtatt cggctagagc gcttcggcgc cggagatgat ctcgatcagc
     1321 tccttggtga tctgcgcctg gcgtgagcgg ttgtacttca gggtgagcgc cgagatcatg
     1381 tcgccggcgt tgcgggtggc gttgtccatg gcggtcatct gggcggcgta gaagccggcc
     1441 tggttttcca gcatggcgga gaagatctgg gtggtgatgt tccggggcag cagctcttcg
     1501 aggatggtct cctcgtccgg ctcgtactcg tagaccgcgc ccttcaggtc gatgggctgg
     1561 gccgcggcct tcacctcggc cgggatcagc tgcacccccg tgggcgtctg gatgaccacc
     1621 gagcggaatt tcgagaagta gagggtgacg acgtccacgt cgccggcctc gaacagctca
     1681 cgcaccttgg cggccacctc cacggcgacc tcgagcgacg gattgccgcc ggcctcgaag
     1741 gcgccgacgg cgcggtcgag acgcttcagc tggtcgcggg ctttgcggcc gacggtgagg
     1801 atgcggacgt ccttgccctc ggagagcagt cgcgaaatct tctcacgcgc ggcgcggacg
     1861 atggaggagt tgaagccgcc cgccaggccg cggtcggagg tggcgaccac gatcaggtgg
     1921 cgctggtcgg cgccggtgcc caccagcagc ttcggcgcgc cttcgccgga caccccggcg
     1981 gccaggttgg cgatcaccgc ggccatgcgc tcggcatagg gccgggcgtt ctgggcggcg
     2041 tcctggctgc ggcgtagctt cgccgccgcc accatctgca gcgctttcgt gatcttctgc
     2101 gtggctttca cgcttccgat ccgattgcgc atctccttga ggctggccat cgcctagatc
     2161 ctgatcctcc tggccagcgt taggcgaagg tcgacgcgaa ggcggccaag accgacttca
     2221 gatcgtcttc gacggtcttg aggtccttct cgatgcggat cttgtcgagc atcggctggt
     2281 gcttggtgtg caggtggctg agcagttcgc tctcgaagcg gcgcacctgg ttggtggcga
     2341 tgccgtcgag gtagccgcgg gtgccggcgt agatcacgca gacctgctcc tccaccgact
     2401 gcggcgaata ttgcggctgc ttcaagagct cggtcaggcg ctcgccgcgc gccaactggc
     2461 gttgggtcgt gacgtcgagg tcggagccga acttcgcgaa ggcggccatt tcccggtac
//
LOCUS       DATAJL010001018         1724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115281,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001018 DATAJL010000000
VERSION     DATAJL010001018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1724
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115281"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..1252
                     /locus_tag="VHN39_19230"
     CDS             224..1252
                     /locus_tag="VHN39_19230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012778812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HEX2818535.1"
                     /translation="MGEVVTIGLDIAKSVFQVHGIDAAGEVIVRRLIRRAQLLPFFAR
                     QPACVVGIEACASSHHWARELRALGHQVRLMPASYVKPYVKRQKNDAADAEAICEAVT
                     RPTMRFVEVKSPEQQSVMVLHRVRLMLMRQRIQLANAIRGHMAEFGLVAPIGREGLQT
                     LIIMIVETGDERVPEEARTCLELLASQLRLVNGQILETDRRIRTSARSTDVGRRLMEI
                     PGVGPLLASALVASVADPTAFKTGRNLAAWVGLVPKQNSSGGKERLGGITKQGDRYLR
                     QLLVVGALAVVRYAERNGTRRPWLVQLLARRTTKVATVALANKTARMAWKIMTSGERY
                     REPAALAA"
BASE COUNT          310 a          543 c          587 g          284 t
ORIGIN      
        1 ctatggcgaa tatctgctgg cgaaggtcgg caaggtcttc cctgacctaa cggcggcttc
       61 tctattggag cgctgagccg cgcgcgttaa cggtagtcca gccttcgtca tgaactgaat
      121 gtccgctttc cgcagcgaac ccaacttccg cttttgatgc tgtggacggt gctccacccc
      181 cgcgggagcg taagcttctg ctttttggag gaggagaagg tcgatgggag aggttgtcac
      241 gatcggtctg gatatcgcca agtcggtgtt ccaggtgcac gggatcgacg cggcgggcga
      301 ggtgatcgtt cgtcgactga taaggcgggc gcagctgctg ccgttcttcg ccaggcagcc
      361 ggcgtgcgtc gtcgggatcg aggcgtgcgc ctcgtctcat cactgggcgc gtgagcttcg
      421 ggcgctcggt caccaggttc ggcttatgcc ggcgagttat gtgaagccct acgttaagcg
      481 acagaagaac gacgcggcgg atgccgaggc gatctgcgag gcggtgacac ggccgaccat
      541 gcgctttgtc gaggtgaaga gcccagagca gcaaagcgtg atggtgctgc atcgggtaag
      601 actgatgttg atgcgccagc ggattcagct cgccaacgcg atccgcggtc acatggcgga
      661 gttcgggttg gtggcgccga tcggccgcga ggggttgcag acgctcatca tcatgatcgt
      721 cgagacaggc gacgagcgcg taccggaaga agcacgaacc tgcctcgagt tgctcgcctc
      781 ccagttgcgc ctggtcaacg ggcagatact cgagacggat cggcggatcc gcaccagcgc
      841 ccgctccacc gatgttggtc gtcgtctgat ggagatcccc ggcgtgggtc ctctgctcgc
      901 cagcgcgctg gtcgccagcg tcgctgatcc aacggccttc aagaccggcc gcaacctggc
      961 ggcgtgggtc gggctggtcc ccaagcagaa ctccagcggc ggcaaggaac ggctcggcgg
     1021 gatcaccaag cagggtgacc gatacctgcg gcagctcctc gtcgtcggcg ccctggccgt
     1081 ggtgcgctac gccgagcgca acggcacgcg tcggccgtgg ctcgtgcaac tcctcgcgag
     1141 gcgcacgacc aaggtcgcca ccgtcgccct ggccaacaag accgcccgca tggcgtggaa
     1201 gatcatgacc agcggcgagc gctatcgaga gccggccgct ctcgcggcat aaccatctgg
     1261 cgcaccggcg cccacgagct tgggaagggg aagaagacta acgcatccag ccggtcgata
     1321 ccgaaggtag gtaaaaccca tctgcgccag tgcgcctcgg agcgcgtgct tttggtcggg
     1381 aacccgcctc gcggaaggca ttatggccag cggtcattcg cgccgcatca acaggtcgaa
     1441 cacatggccg ctccgaccaa tggaagcgaa acgtcgaaac actcttgcca agggagcgcc
     1501 gtccacacat ggcgcaaagc cgatccagcc ccgataagcc gtaggccggc agcctacgcg
     1561 gggtcagcgc gggcgacggc gtccgcgccg gctggcaggc gcatgggaca ggtggggtcg
     1621 gtggcggcgc gccatacggc ctctgagacg tcgcgcgagt gggtgacgtc gccgcccgcc
     1681 ccgaagcggg caaacatctg cgccgccacc gaccccacct gtcc
//
LOCUS       DATAJL010001019         1511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115309,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001019 DATAJL010000000
VERSION     DATAJL010001019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115309"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VHN39_19235"
     CDS             complement(<1..684)
                     /locus_tag="VHN39_19235"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HEX2818536.1"
                     /translation="MKFVAAVFAAVLTLAGPARAASLSAADLAHIADMETRLPATGRD
                     GAPVERTLTARMAELKVPGVSVAFIENGNVKWTRAYGVAAAGGTQPITPTTLFQAASM
                     SKAFAATAVLRLVDQGKLDLDEDVNTRLKAWKVPPGPYTAEQKVTLRRILSHTAGLTV
                     GGFPGYQVGKPVPSLVQMLDGVAPANTPPIRSFEAPGGAFAYSGGGYLVAQLAIVEAG
                     GKPYPEFLDQ"
     gene            992..>1511
                     /locus_tag="VHN39_19240"
     CDS             992..>1511
                     /locus_tag="VHN39_19240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002516251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2818537.1"
                     /translation="MTQFTDFGLAAPLLKALASEGYTIPTPIQVQAIPGVMAGRDLQG
                     IAQTGTGKTAAFALPILHRLAAEKRQPERKGARVLVLSPTRELASQIGESFRTYGKHM
                     GVTVAVIFGGVKYGAQHKAMANGVDVLVATPGRLLDHLQEKTITLRGVEIFVLDEADQ
                     MLDLGFVLPIRKI"
BASE COUNT          250 a          533 c          494 g          234 t
ORIGIN      
        1 ctggtccagg aactcgggat agggcttgcc gcccgcttcg acgatcgcca gttgcgccac
       61 cagatagccg ccgccggaat aggcgaaggc gccgccgggc gcttcgaatg agcggatggg
      121 cggagtgttg gcgggggcca cgccatcgag catctgcacc aggctgggga ccggctttcc
      181 gacctggtag ccgggaaagc cgccgaccgt caggcccgcg gtatggctca agatccggcg
      241 aagcgtcacc ttctgctcgg cggtgtaggg gcccggcggg accttccacg ccttcaggcg
      301 ggtgttgacg tcctcgtcga ggtcgagctt gccctggtcc accaggcgaa gcacggcggt
      361 tgcggcgaac gccttgctca tcgaagcggc ctggaaaagg gtcgtgggcg tgatcggctg
      421 ggtcccgccg gcggccgcga cgccgtaggc cctggtccat ttcacattgc cgttctcgat
      481 gaaggcgacg ctgacgccgg gaaccttgag ttcggccatg cgggcggtca aggttcgctc
      541 caccggcgcg ccatcgcgcc ccgtcgccgg cagcctggtc tccatgtcgg cgatgtgggc
      601 caggtcggcg gccgagagcg acgcggccct ggccggcccc gccagggtca ggacggcggc
      661 gaaaacggcg gctacgaact tcatgaaggg cctcctggag cagctggaat ccagcttggc
      721 gccctgcgct gaaaaggcca cagagctgcg gcaatcccga ccgcgtgggt tgacttatcc
      781 acagcgaacg ccgatgtgca gcccgcgtca gacaactatg acgctatcgg cgctccagcc
      841 gcgtggggtc tctcttcgag gcccagcctg tcgagcaccg taagacccat agatcgccca
      901 tcacgcgggg cgcttcccca aagacccgcg acctccgcgc cctcgatagg atcgagccgg
      961 cgcgttcggc gcatatgtga gactaaacgt tttgactcaa ttcaccgatt tcggcctggc
     1021 cgccccgctg ctcaaggcgc tggcctccga aggctacacc atccccacgc cgatccaggt
     1081 gcaggcgatc cccggcgtca tggccggccg tgacctgcag ggcatcgccc agaccggcac
     1141 cggcaagacc gccgccttcg cgctccccat cctccaccgc ctggccgccg agaagcgcca
     1201 gccggaacgc aagggcgccc gcgtcctggt gctctccccc acccgtgaac tcgccagcca
     1261 gatcggcgag agcttccgca cctatggcaa gcacatgggc gtcaccgtcg cggtgatctt
     1321 cggcggcgtg aagtacggcg cccagcacaa ggccatggcc aatggcgtcg acgtgctcgt
     1381 cgccacacct ggccgcctgc tcgaccacct gcaggaaaag accatcaccc tgcgcggcgt
     1441 ggagatcttc gtcctcgacg aggccgacca gatgctcgac ctgggcttcg tgctgccgat
     1501 ccgcaagatc g
//
LOCUS       DATAJL010001020         2434 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115657,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001020 DATAJL010000000
VERSION     DATAJL010001020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115657"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1283)
                     /locus_tag="VHN39_19245"
     CDS             complement(<1..1283)
                     /locus_tag="VHN39_19245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEX2818538.1"
                     /translation="MEDLKDRVSLDDRLGAAAMSGMTMAVWADLKPDATFIHDPTGKT
                     TTFGEVNAQANRIVRLLRQHGLSTGDSVALVCSNRAEFVEVLAACQRGGWRITPVNWH
                     LTADEIAYIINDCEAKAVFCEQRVASSSAAVAQCPNVLVKVAIGGPIAGFLDYAASLA
                     PMDGTDIPDPELGNAMMYTSGTTGRPKGVYRAQPVIAPPGIYALRGYDHETSVQLCAG
                     PAYHAAPLAFDVRGAMGAGCELVLMDKWDSELALRLMAEKRVSHMHLVPIMFQRLLAL
                     PEEVKANYDLSSVIYIVHGAAPCPPEVKSAMIEWFGPVLSEYYAGSEGGAGFVISSEE
                     WLQKPGSVGKRPALLGSKILDEAGAECPTGVPGGIYHQLPPGGGFTYYKDEAKTNANR
                     VGDYFTMGDVGYFDEDGYLFLTGRNAETIISGGVN"
     gene            complement(1432..1842)
                     /locus_tag="VHN39_19250"
     CDS             complement(1432..1842)
                     /locus_tag="VHN39_19250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017504086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2177 family protein"
                     /protein_id="HEX2818539.1"
                     /translation="MLKYLITYLGAGVSIAALDAVYLTLAGQKVYRPLLDYALADKPK
                     MPAAVVFYLMYVLGVVVLAVLPNKDAGLGKTALTGALLGAFAYATYDLTNQATLKVWA
                     TRITVIDICWGTFLTATGATAGYLAWRWASKTFG"
     gene            complement(1867..>2434)
                     /locus_tag="VHN39_19255"
     CDS             complement(1867..>2434)
                     /locus_tag="VHN39_19255"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012523607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2818540.1"
                     /translation="IRGRAAAEGLTNLTVITADMNDFNPPDAGKYDRVVSVEMFEHMA
                     NWRALLSRVKTWVKPDGRLFIHIFTHKTGPYRFDVEDEADWIAQHFFAGGVMPSHNLM
                     RQFPDLFTVEEDWRWSGAHYEKTALHWLENYDRNIAVIRPVLRQVYGDKAVLWHRRWR
                     LFFLATAGLFGHRGGEEWGVSHYRLKPA"
BASE COUNT          390 a          783 c          861 g          400 t
ORIGIN      
        1 atgttcaccc cgccggagat gatcgtctcg gcgttgcggc cggtgaggaa caggtagccg
       61 tcctcgtcga agtagccgac gtcgcccatg gtgaagtagt cgccgacccg gttggcgttg
      121 gtcttggcct cgtccttgta ataggtgaag ccgccgccag gcgggagctg gtggtagatg
      181 ccgccaggca cgccggtcgg gcactcggcg cccgcctcgt cgaggatctt ggagccgagg
      241 agcgcggggc gcttgccgac actgccgggt ttctgcagcc actcctccga cgagatgacg
      301 aagccggcgc caccctccga gccggcgtaa tattcgctca gcaccgggcc gaaccactcg
      361 atcatggcgg acttcacctc cggcgggcag ggcgcggcgc cgtggacgat gtagatcacg
      421 ctggagaggt cgtagttcgc cttcacctcc tcgggcaggg ccagcaggcg ctggaacatg
      481 atcggcacca ggtgcatgtg gctgacgcgc ttttcggcca tcagccgcag cgccagctcc
      541 gaatcccact tgtccatcag caccaactcg cagcccgcgc ccatggcgcc gcgcacgtcg
      601 aaggccagcg gggcggcgtg ataggccggc cccgcgcaga gctggacgga ggtttcgtgg
      661 tcatagccgc gcagggcgta gatgccgggc ggggcgatca ccggctgggc gcggtagacg
      721 cccttgggcc gccccgtggt gccggaggtg tacatcatgg cgttgccgag ctcggggtcg
      781 ggaatgtcgg tcccgtccat cggcgccagc gacgcggcat agtcgaggaa gcccgcgatc
      841 gggccgccga tggcgacctt gaccaggacg ttggggcatt gtgcgaccgc ggcgcttgaa
      901 gaggccaccc gctgctcgca gaacaccgcc ttcgcttcgc agtcgttgat gatgtaggcg
      961 atctcgtcgg cggtcagatg ccagttgacc ggcgtgatcc gccagccgcc gcgttggcag
     1021 gcggccagca cctcgacgaa ctcggcgcgg ttggagcaga ccagcgccac ggagtccccg
     1081 gtcgacaggc catgctggcg caagaggcgc acgatgcggt tggcctgggc gttcacctcg
     1141 ccgaaggtcg tggtcttgcc ggtcggatcg tggatgaagg tcgcgtcggg tttcaggtcg
     1201 gcccagacgg ccatggtcat gccgctcatc gccgccgcgc ccagccgatc gtcgaggctc
     1261 acgcgatcct tcaggtcttc catcaaatcc tcccggcgcc cccttaagaa cggcgcgctg
     1321 actgctattg gaggctccgg aaggcgggac gaaatgatcc gcgcccgggc gacccggcgg
     1381 cctcgccgac accatcacac gacacaatgc gggcgacaat tgggaggcag atcagccgaa
     1441 ggttttcgac gcccagcgcc aggcgagata gccggcggtg gcgccggtgg cggtcaggaa
     1501 cgtcccccag cagatgtcga tgacggtgat ccgcgtcgcc cagaccttga gtgtcgcctg
     1561 gttggtgagg tcgtaggtgg cgtaggcgaa ggcgcccagg agcgcgccag tcagcgccgt
     1621 cttgccgagg cccgcgtcct tgttgggcag gaccgccagc accaccacgc ccaggacata
     1681 catcaggtag aagacgacgg ccgccggcat cttcggcttg tcggccagcg catagtccag
     1741 caacgggcga tagaccttct gcccggcgag ggtgagatag accgcgtcga gcgcggcgat
     1801 gctcacgccg gcgcccaggt aggtgatcag gtacttcagc atcgcgtgcc cccgctcgct
     1861 ctaggcctag gccggtttca gccgatagtg gctgacgccc cattcctcgc cgccacggtg
     1921 gccgaagagg ccggcggtgg ccaggaagaa cagtcgccag cgccggtgcc agagcacggc
     1981 cttgtcgccg tagacctggc gcagcaccgg gcggatgacg gcgatattgc ggtcgtagtt
     2041 ctcgagccag tggagcgcgg tcttctcgta gtgggcgccg ctccagcgcc agtcctcctc
     2101 gacggtgaag aggtccggga actggcgcat caggttgtgg ctgggcatca cgccgcccgc
     2161 gaagaagtgc tgggcgatcc agtcggcctc gtcttccacg tcgaagcggt aggggccggt
     2221 cttgtgggtg aagatgtgaa tgaagagccg cccgtccggc ttgacccagg tcttcacccg
     2281 gctgagcagc gcgcgccagt tggccatgtg ctcaaacatc tcgacggaga ccacgcggtc
     2341 gtatttcccg gcgtcgggtg ggttgaagtc gttcatgtcg gcggtgatga ccgtgaggtt
     2401 ggtcaggccc tcggcggcgg cgcggccgcg gatg
//
LOCUS       DATAJL010001021         4514 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Phenylobacterium sp. isolate SMAG_U6910 k141_115914,
            whole genome shotgun sequence.
ACCESSION   DATAJL010001021 DATAJL010000000
VERSION     DATAJL010001021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955527
            Sequence Read Archive: SRR12756247
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Phenylobacterium sp. (soil metagenome)
  ORGANISM  Phenylobacterium sp.
            Bacteria; Pseudomonadota; Alphaproteobacteria; Caulobacterales;
            Caulobacteraceae; Phenylobacterium.
REFERENCE   1  (bases 1 to 4514)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4514)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 03:23:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,854
            CDSs (total)                      :: 3,823
            Genes (coding)                    :: 3,799
            CDSs (with protein)               :: 3,799
            Genes (RNA)                       :: 31
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 27
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 3 of 24
            Pseudo Genes (incomplete)         :: 21 of 24
            Pseudo Genes (internal stop)      :: 2 of 24
            Pseudo Genes (multiple problems)  :: 1 of 24
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4514
                     /organism="Phenylobacterium sp."
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115914"
                     /isolate="SMAG_U6910"
                     /isolation_source="soil"
                     /db_xref="taxon:1871053"
                     /environmental_sample
                     /country="USA"
                     /lat_lon="68.38 N 149.43 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..830)
                     /locus_tag="VHN39_19260"
     CDS             complement(<1..830)
                     /locus_tag="VHN39_19260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012284116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEX2818541.1"
                     /translation="MADGNLANLAQAREDAYSTPLDQLNPAQPALFQADTMWPIFERL
                     RAEAPVHRTTEHEFGPYWSITKYNDIMAIDTNHQVFSSEGGITIAEPPGGEGPLPMFI
                     AMDPPKHDVQRKTVSPAVSPMNLQVMEPLIRERAAAILDSLPIGEEFDWVDKVSIELT
                     TMTLATLFDFPFEERRKLTRWSDVITAVPGHGIIDTMQQKLAEIDECFDYFTRLWNQR
                     VNAPPAGDLISMLAHGKTTRNMPPREYRGNVILLIVGGNDTTRNTITGSVVALNQNPD
                     "
     gene            934..1752
                     /locus_tag="VHN39_19265"
     CDS             934..1752
                     /locus_tag="VHN39_19265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012287577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0001510 - RNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX2818542.1"
                     /translation="MPAVIPIDDPEDPRLADYREVRERDLVGRQGSFIAEGQVVLEKL
                     ILGGRHPVRSVLVADKRVAALQPLLAGLKDDVAVYAASQAVMDAVVGFPIHRGILAAG
                     TRREPDLGALLAALPRNALVMGLVGIANHDNLGGLFRNAAAFGVDAILLDDGCCDPLY
                     RKAIRVSVGAALTLPFARAGGAGELVARLAALDFSVIALSPRGETDLADLQPAARTAV
                     LFGAEGPGLPDCVLARTGTVRIEMAGGFDSLNVATTSGIVLHQLVAARRQITTL"
     gene            1821..4247
                     /locus_tag="VHN39_19270"
     CDS             1821..4247
                     /locus_tag="VHN39_19270"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2818543.1"
                     /translation="MAGENGSNMPSGLEQSGPVFDRARRLARTLFGAVDAQVVLISDG
                     KAWRSHDPEGQLPKEAPAARIAAEEGRLLWVPDASLDPRFCDGLTVKGAPHIRLFVAA
                     PLRLEDGSIPGVLAVASNSPRPFEVDLADRLQDLADFVADEWSRIQSRLAREAARRES
                     DGAQRMVAQIIQTAPLSLLMTDREMRVAAASPRWMESRQMVGQDVVGRSLYDLFPATH
                     QKWRPIYDQCLAGGSRRADRVEFARPDGSVIWLQVELTPWRDGSGEIGGLIISSHDVT
                     SMVEALERTERSEERLRLAMEIADIHVWELDFRSHELINIGAAANFYTEETTYKQLSR
                     DIWSTIDERDLPMVKEAWRQHEEEGVPYRPEYRTRRSDGKDVWVEGAVRYLTDEDSKP
                     LRMIGALQNITDRKAAEFALVQAKEEAESATRAKSAFLATMSHEIRTPLNGVLGMAQA
                     MAMGEVTDQQRERLDVIRQSGESLLAILNDVLDLSKIEAGKLELEQAEFDIDELSRGA
                     IGAFAATAQAKGLAFELKVERSAHGVYRGDSVRVRQILYNLVSNALKFTETGGVKVVV
                     GRRTKLLSISVADTGIGIADNKLVSLFQKFEQADASTTRRYGGTGLGLAICRDLAELM
                     GGTVRAESTLGAGAIFTVELPLARIAASPAKPAPPPAERSAPIEGVALRVLAAEDNGM
                     NQLVLRTLLEQVGVTPVLVGNGREAVEAWAREPWDLILMDVQMPEMDGPTATGVIRAR
                     ERAEGRPRTPIVALTANAMAHQVTEYLQAGMDDFVAKPIEAGRLYTVVQAALDKAHET
                     QVAGGASAAA"
BASE COUNT          714 a         1492 c         1581 g          727 t
ORIGIN      
        1 tgatcggggt tctggttcag ggccaccacg ctgccggtta tggtgttgcg ggtggtgtcg
       61 ttgcccccga cgatgaggag gatgacgttg ccgcgatatt cgcgcggcgg catgttcctg
      121 gtcgtcttgc cgtgggccag catggagatg agatcgccgg ccggcggggc gttcacgcgc
      181 tggttccaca gccgggtgaa atagtcgaag cactcgtcga tctcggccag cttctgctgc
      241 atggtgtcga tgatcccgtg gcccggaacg gcggtgatca catcggacca gcgggtcagc
      301 ttgcgacgct cctcgaaggg aaaatcgaac aaggtggcca gagtcatggt ggtgagttcg
      361 atggagacct tgtccaccca gtcgaactcc tcgccgatcg gcaggctgtc gaggatcgcg
      421 gcggcccgct cgcggatcag gggctccatg acctgcaggt tcatcggcga gacggccggg
      481 ctcacggttt tgcgctgcac atcgtgcttg ggcgggtcca tggcgatgaa catgggcagc
      541 ggcccttcgc ccccgggcgg ttcggcgatg gtgatgccgc cctccgacga gaacacctgg
      601 tgattggtgt cgatcgccat gatgtcgttg tacttggtga tcgaccagta ggggccgaac
      661 tcgtgctctg tcgtgcggtg cacgggcgcc tcggcgcgca ggcgctcgaa gatcggccac
      721 atggtgtcgg cctggaagag cgccggctgg gccgggttca gctggtccag gggggtggag
      781 taagcgtctt cgcgcgcttg cgcgaggttc gccagattgc cgtccgccat ggtgcgtcct
      841 cctgatgtta gcattgtaca gatcgcaaga tgacgccagc gtcaacttcg cgaggcgctg
      901 gagacgaccc ccggagcgtg acaaaagcgg ccggtgcccg ccgtcattcc catcgacgac
      961 cccgaagacc cgcggctcgc cgattaccgc gaggtgcgcg agcgcgacct ggtgggccgc
     1021 caggggagtt tcatcgccga gggccaggtg gtgctggaaa aactgatcct cggcggccgc
     1081 catccggtcc gctcggtgct ggtcgccgac aaacgtgtgg cggccctgca gccgctgctg
     1141 gcggggctga aggatgacgt cgccgtctat gcggcgagcc aggcggtgat ggacgcggtg
     1201 gtgggctttc cgatccaccg cgggatcctg gcggccggga cgcgccgcga gcccgacctg
     1261 ggcgccctgc tggcggccct gccgcgcaac gccctggtca tgggtctggt ggggatcgcc
     1321 aatcacgaca acctgggggg tctgtttcgc aacgccgcgg ccttcggcgt cgacgccatt
     1381 ctgctcgacg acggttgttg cgacccgctc tatcgcaagg cgatccgcgt ctcggtcggc
     1441 gcggcgctga ccctgccttt cgccagagcc ggcggggcgg gcgaactagt ggcgcggctg
     1501 gcggcgctgg acttctccgt catcgccctt tcgccccgcg gagagaccga tctcgccgac
     1561 ctccaacccg ccgcacgcac ggcggtcctg ttcggcgcgg aggggccggg cctgccggac
     1621 tgcgtgctgg cgcgaacggg gaccgtgcgc atcgaaatgg ccggtggttt cgactcgctc
     1681 aacgtggcga caaccagcgg gattgtcctg caccagctgg ttgcggcgcg acgtcaaata
     1741 acgacgttat agagcccttt cttaaccccc ctcggcaagg atatcgccgt caacgagaaa
     1801 acccatccct ggggggatgc atggccggcg agaatggctc gaatatgccg agtgggctgg
     1861 agcagtccgg gccggtcttt gaccgtgcgc ggcggctcgc caggacgctg ttcggcgccg
     1921 tggacgccca ggtcgtgctg atctccgacg gcaaggcatg gcgcagccac gatcctgagg
     1981 gtcagttgcc gaaggaggcg cccgccgccc gcatcgcggc agaggaaggc cgcctgcttt
     2041 gggttcccga cgcgagcctc gatccccggt tctgcgacgg cctgacggtc aagggggcgc
     2101 cccatatccg gctcttcgtc gccgctccac tgcgccttga ggacgggtcg atccccgggg
     2161 ttctggcggt cgcctctaac agtccgcgac cgtttgaggt cgacctcgcc gatcggctgc
     2221 aggacctggc cgacttcgtg gccgacgagt ggagccgcat ccagtcgagg ctcgcccgcg
     2281 aggcggcacg gcgcgaaagc gacggggccc agcggatggt ggcccagatc atccagaccg
     2341 cgccgctctc gctcctgatg accgatcgcg agatgcgcgt cgccgccgcc agcccgcgct
     2401 ggatggagag ccgacagatg gtcggtcagg acgtggtcgg ccgttcgctc tacgatctct
     2461 tccccgccac ccatcagaag tggcgcccga tctacgatca gtgcctcgcc ggcgggtcgc
     2521 gtcgcgccga tcgcgtggag ttcgcgcggc ccgatggctc ggtcatctgg ctgcaggtgg
     2581 agctgacgcc ctggcgggat ggctcagggg agatcggcgg gctgatcatc agctcccatg
     2641 acgtcaccag catggtcgag gccctggagc gcacggagcg ctccgaggag cgcctgcggc
     2701 tggcgatgga gatcgccgac atccacgtct gggaactgga tttccgcagc catgaactga
     2761 tcaatatcgg ggccgcggcc aacttctaca ccgaggaaac cacctacaag cagctgagcc
     2821 gcgacatctg gtcgaccatc gacgagcgcg atttgccgat ggtcaaggag gcgtggcggc
     2881 agcatgagga agagggcgtc ccctatcggc ccgagtaccg gacccgccgt tccgacggca
     2941 aggatgtctg ggtggagggc gcggtgcgct acctgacgga cgaggatagc aagccgctgc
     3001 gcatgatcgg cgcgttgcag aacatcaccg accgcaaagc cgctgaattc gccctggtcc
     3061 aggccaagga ggaggccgag agcgccaccc gcgccaagag cgccttcctg gctaccatga
     3121 gccatgagat tcgcacgccg ctgaacgggg ttcttggcat ggcccaggcc atggccatgg
     3181 gcgaggtcac cgatcagcag cgcgagcggc tggacgtcat tcgccagtcc ggtgagagcc
     3241 tgctcgccat cctcaacgac gtcctggacc tttcaaagat cgaggccggc aagctggaac
     3301 tggagcaggc cgagttcgac atcgacgagc tgtcccgcgg cgccatcggc gcctttgccg
     3361 ccaccgccca ggccaagggc ctggccttcg agctgaaggt cgagcgatcg gcccacggcg
     3421 tctatcgcgg cgacagcgtc cgggtccgcc agatcctcta caacctggtc tccaacgcgc
     3481 tcaagttcac cgagaccggg ggcgtgaagg tcgtggtggg ccgccggacc aagctgctct
     3541 cgatcagcgt cgcggacacc ggcatcggca tcgccgacaa caagctggtg agtctcttcc
     3601 agaagttcga gcaggccgac gcctcgacca cccgccgcta tggcggcacc ggcctgggcc
     3661 tggccatctg ccgcgatctc gccgaactga tgggcggtac ggtcagggcc gagagcacgc
     3721 tgggcgcggg cgccatcttc acggtcgagc tgcccctggc gcgcatcgcg gcgagccccg
     3781 ccaagccggc gccgccgccc gcggaacgtt ccgccccgat cgagggcgtg gcgctccgtg
     3841 tgctggccgc cgaggacaac ggcatgaacc agctggtcct gaggacactg ctggaacagg
     3901 tcggcgtcac gccagtgctc gtcggcaacg gtcgcgaggc cgtcgaggcc tgggcgcggg
     3961 agccttggga cctgatcctg atggacgtac agatgccgga gatggacggc cccaccgcga
     4021 ccggcgtgat ccgcgcccgc gagcgcgccg aggggcgtcc gcgcacgccg atcgtggctc
     4081 tgaccgccaa cgccatggcc caccaggtca ccgaatatct gcaggccggc atggacgact
     4141 tcgtggccaa gccgatcgag gccggccgcc tctacaccgt cgtccaggct gcgctggaca
     4201 aggcccatga gacccaggtc gccggcgggg cttccgccgc cgcctgacct tcaaagcttg
     4261 ggaagaagcg cggacgccct cccgacggcg ggtgtgtgaa gcaccgccag gagaacgccc
     4321 gcccgtccgt tcagagcgcg gatcttgcga ggcctcagcc gaattcgtag ccgctgatcg
     4381 ccacgtccat ggccacgtcg cggaaggcca cgtggcccac ttcgccctcg gcggcgccgg
     4441 ccgccacgaa caggggcgcg agatgctcct cccgcggatg ggcttcgcgg gcgtaggggg
     4501 cctggtccca atgg
//
